LOCUS       DASVHM010000001         2873 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_144290, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000001 DASVHM010000000
VERSION     DASVHM010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2873
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144290"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1704
                     /locus_tag="VF308_00005"
     CDS             <1..1704
                     /locus_tag="VF308_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEX7435063.1"
                     /translation="VSSGATFDPGGVFGSDTYFDSLTMFVSFLLAGRYLALKMRNRVA
                     ATLEGALARLPAAVRRVDAEGEVSVIALHALRVGDRLRVLPGEAFAADGRLLEGCTEA
                     DEALLTGESHPVAKAPGDEVIAGSLNLRGPVLQLAERLGPDTRYEAIVALLRSALTER
                     PALLHAADRIAGPFLWTVLVLAATAGAAWSLIDPARAVWVAVSVLIVTCPCALSLAAP
                     SALLAAAGALARRGVLVRRLDALEALATLDTLCFDKTGTLTDGQVSVARVHPLPAAQR
                     AGLDESTLLQMAADLAASSTHPLSRALAAHAKPGDARFAWSGVSEEAGFGLQAEGTDG
                     QRYRLGAPGWAAGNAPAAAPIDETPPKRPQVCLAGPGGALAAFEFAEALRPDAQATVA
                     KLQRAGLAVTLLSGDATARVREVADRLGVTGAQGDAGPADKLATVAALQRQGHRVGMV
                     GDGLNDAPVMARADASFAIGEASALTRANADFILMSGHLADIARARETARHAMRVMRQ
                     NLAWAVVYNAICVPLALFGWFPPWLAGLGMATSSLVVVLNALRIDRRPRREPLFTPEA
                     A"
     gene            1701..2543
                     /locus_tag="VF308_00010"
     CDS             1701..2543
                     /locus_tag="VF308_00010"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX7435064.1"
                     /translation="MNYPTILVHLDSGPRCAARVALATQLARAQDAHLVGLAPTGMAD
                     VMLSMNTAVPDGIEYIQLSASFLREQAEAVAAAFEHQVAPAGLASYEARVVEDEPIDA
                     LARYGRCSDLVVIGQSDRATRIDNVAWDFPQQALQHLGRPVLVVPYAGTFERVGERVL
                     VAWKDTREAALAVRDALPLLRGAERVVLLSFAEEGVPGAADRLELSGVQQWLGRHRVD
                     AEIRSEPHSADVGEALLSRASEFGSDLIVMGAYGHSRMREWVTGGVTRVLLARMTVPV
                     LMSH"
     gene            2564..2713
                     /gene="ccoS"
                     /locus_tag="VF308_00015"
     CDS             2564..2713
                     /gene="ccoS"
                     /locus_tag="VF308_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009517507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HEX7435065.1"
                     /translation="MDILFLLVPVSVLLVLALIGVFAWALHAGQFDDLEREGERILGD
                     EAREA"
BASE COUNT          372 a         1045 c         1025 g          431 t
ORIGIN      
        1 gtcagctcgg gggcgacctt cgacccgggc ggcgttttcg gcagcgacac ctatttcgat
       61 tcgctgacga tgttcgtcag cttcctgctc gccggccgct atctggcgct gaagatgcgc
      121 aaccgggtcg cggcgacgct cgaaggtgcg ctggcgcgac tgcccgccgc ggtgcggcgc
      181 gtcgatgccg agggcgaggt cagcgtgatc gcactgcacg cactgcgcgt cggcgaccgg
      241 ctgcgcgtgc tcccgggcga agcgttcgca gctgacggcc ggctgctcga ggggtgcacc
      301 gaggccgacg aggcgctgct gaccggcgaa tcgcatccgg tcgcgaaggc acccggcgac
      361 gaagtcatcg ccggcagcct gaacctgcgc gggccggtgc tgcagctcgc cgaacggctc
      421 ggccccgaca cgcgctacga ggcgatcgtt gcgttgctgc gcagcgcgct gaccgaacgg
      481 ccggcactgc tgcacgccgc cgaccggatc gccggcccgt tcctgtggac cgtgctggtg
      541 ctggccgcca cggccggcgc ggcctggtcg ctgatcgacc ctgcgcgcgc ggtgtgggtg
      601 gcggtctcgg tgttgatcgt cacgtgcccg tgcgcgctct cgttggcggc accgtcggcc
      661 ctgctcgccg cggccggcgc gttggcccgg cgtggcgtgc tggtgcggcg cctcgatgcg
      721 ctcgaggcac tggccacact cgacaccctg tgcttcgaca agaccggaac gttgaccgac
      781 ggccaggtga gcgtggcccg ggtccacccg ctgccggccg cgcagcgtgc cggcctcgac
      841 gaatcgacgt tgctgcaaat ggccgcggat ctcgccgcat cgtccacgca tccgttgtcg
      901 agggcactcg ctgcgcacgc gaagccgggc gatgcgcggt tcgcatggag cggcgtcagc
      961 gaagaggccg gcttcggcct gcaagccgaa ggcaccgacg ggcaacgcta ccgcctcggc
     1021 gcgccgggct gggccgcagg caacgcgccc gctgcggcgc cgattgacga gacaccgccc
     1081 aagaggcccc aggtctgcct cgccggcccc ggcggcgctc tcgccgcctt cgaatttgcc
     1141 gaagcgctgc gccccgatgc gcaggccacc gtcgcgaagc tgcagcgcgc cggcctggcc
     1201 gtcacgctgc tgtccggcga tgcgacggcg cgggtgcgtg aagtcgccga ccggctcggc
     1261 gtgaccggcg cccagggcga cgccgggccc gccgacaagc tggccacggt cgcggccctg
     1321 caacgccagg gccaccgggt cggcatggtc ggcgacgggc tcaacgacgc gccggtgatg
     1381 gcgcgcgccg atgcgtcgtt cgccatcggc gaggcttcgg cgctgacgcg tgcgaacgcc
     1441 gacttcattc tgatgtcggg ccatctggcc gacatcgccc gggcccgcga gacggcgcgc
     1501 cacgcgatgc gcgtgatgcg ccagaacctg gcgtgggcgg tggtctacaa cgccatctgc
     1561 gttccgctcg cgctcttcgg ctggttcccg ccgtggctgg cggggctcgg catggcgacc
     1621 agttcgctcg tcgtggttct caacgcgctg cgcatcgatc gcaggccgcg ccgcgagccg
     1681 cttttcacac cggaggccgc atgaattacc ccaccatcct cgtccacctc gactccggcc
     1741 cgcgctgcgc ggcgcgcgtg gctctcgcga cgcagctggc gcgtgcccaa gacgcccatc
     1801 tggtcgggct cgcgccgacc gggatggccg acgtgatgct gtcgatgaac accgccgtcc
     1861 ccgacggcat cgagtacatc cagctctccg cgagcttcct gcgcgaacag gccgaagcgg
     1921 tcgccgccgc gttcgagcac caggtcgcgc cggcggggct cgcctcgtac gaggcccgcg
     1981 tcgtcgaaga cgagccgatc gatgccctgg cgcgctacgg gcgctgcagc gacctcgtcg
     2041 tcatcggcca gtccgatcgc gcgacccgca tcgacaacgt cgcctgggac tttccgcagc
     2101 aggcgcttca gcatctcggc cgcccggtgc tcgtggtgcc ctacgccggg accttcgagc
     2161 gcgtcggcga gcgcgtcctc gtcgcctgga aggacacgcg cgaagcggcg ctcgccgtgc
     2221 gcgacgcgct gccgctcctg cgcggagccg aacgcgtcgt gctgctgagc ttcgcggaag
     2281 agggcgttcc cggcgctgcc gaccggctcg agttgagcgg cgtgcagcaa tggctcggcc
     2341 gccatcgcgt cgatgcggag atccgcagcg agccgcacag cgccgatgtc ggcgaggcgc
     2401 tgctgtcgcg ggcctcggaa ttcggctccg acctgatcgt gatgggcgca tacggccact
     2461 cgcgaatgcg cgaatgggtc accggaggcg tgacgcgcgt tctgctcgcc cgcatgaccg
     2521 tgccggtgct gatgtcgcac tgagcgaagg cgcaggcccc gcgatggaca tccttttcct
     2581 gctggtcccg gtctcggtgc tcctcgtcct cgccctgatc ggcgtcttcg cctgggccct
     2641 gcacgccggc cagttcgacg atctggagcg cgagggcgag cgcatcctcg gcgacgaagc
     2701 ccgggaagct tgacgccggt caaagcccgc cgcggcccgc cctttgacac tttcccggtt
     2761 tcgggaaaag gagaagccac gatgggaaac gccgttccgg ccatggccgg gcacgaggcg
     2821 cacagcgccg ccccggtgcc cgtatacgac gacggcgcgg tgcgcatgtt cac
//
LOCUS       DASVHM010000002         2266 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_793428, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000002 DASVHM010000000
VERSION     DASVHM010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_793428"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..400
                     /locus_tag="VF308_00020"
     CDS             <1..400
                     /locus_tag="VF308_00020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435066.1"
                     /translation="LELAGSPSDGVALSLFITGGQVLDRATFLGAASAVSRAAAAATL
                     ARAFAGSTLAKLFARTPDDPVRLEVDALVHTIAALRRRSRVDPLGSAPVQLFLAQVDA
                     QSTDIRRLAWGLELGMPANALREGLVTPWA"
     gene            391..717
                     /locus_tag="VF308_00025"
     CDS             391..717
                     /locus_tag="VF308_00025"
                     /inference="COORDINATES: protein motif:HMM:NF014092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit F"
                     /protein_id="HEX7435067.1"
                     /translation="MGLSVRVVCRPEVAPGFELAGLRADTAVDGATARARLAALADDP
                     AVGIVLVEERLHRALPTDFAQRLERQPRPLVAPFPSPRFEAAEAAEQAVLEILRRAIG
                     YRVRLP"
     gene            714..>2266
                     /locus_tag="VF308_00030"
     CDS             714..>2266
                     /locus_tag="VF308_00030"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF003220.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit A"
                     /protein_id="HEX7435068.1"
                     /translation="MSDGCITRVVGALAEASGMRDARLNELVRVGAAGLQGEVLRVAG
                     DSATLQVFEDTGGLTLGEPVRRTGGPLFAELGPGLLGTVFDGIGRPLARLADRTGDFM
                     GAGVELPTLDRACRHEFRPSVAVGIEVGPGDTLGQVNERGLVHHVLVPPGRRGRLRTI
                     RAGAWRVDEPFAELDDGTALTLLQRWPVRRPRPVAARLPYNRPFITGQRIFDFLFPVA
                     EGGAVAVPGGFGTGKTVIEQSLAKFADADVVVYVGCGERGNEMADVLADFAKLVDPRR
                     GTPALDRTVLVVNTSNMPVAAREASIYLGLTIAEYYRDMGYRVAVMADSLSRWAEALR
                     EIGSRLQQMPGEEGYPTYLASRVASLHERAGRVRCAGQPERCGAVTLIGAVSPPGGDF
                     SEPVTQACMRVAGALWALDAELAHQRQFPAVDWHASYSLYVGVVEGWFAQAVDARWPA
                     LRAQMLALLQRDAELREVAAIVGPEALEDADRVTLAGAAAVRELVLGQSAFDAEDAFC
                     APAKTFALA"
BASE COUNT          285 a          804 c          825 g          352 t
ORIGIN      
        1 gctggagctc gcgggatccc cgtccgatgg cgtggcgctc tccctcttca tcaccggtgg
       61 acaggtgctc gaccgcgcca cgtttcttgg cgcagccagt gcagtctcgc gggccgctgc
      121 ggcggccacg ctggcgcgcg cgttcgcggg tagcacgctg gccaagctct tcgcccgaac
      181 gcccgacgat ccggtgcgcc tcgaagtcga tgcgctcgtc cacacgatcg ccgcactgcg
      241 ccgccgcagc cgcgtcgacc cgctgggcag cgccccggtg cagttgtttc tcgcgcaagt
      301 cgacgcgcag agcacggata tccgccgcct cgcctggggg ctcgagctgg gcatgccggc
      361 caacgcgttg cgtgaagggc tggtgacacc atgggcctga gcgtgcgcgt cgtgtgccgg
      421 cccgaggtcg cgcccggatt cgaattggcc gggttgcgcg ccgacacggc ggtcgacggc
      481 gccaccgcac gggcgcggct cgccgcgctc gccgacgatc ctgcggtcgg catcgtgctc
      541 gtggaagagc ggctgcatcg cgcgctgccg acggactttg cgcagcgtct cgagcgccag
      601 ccgcggccgc tcgtcgcccc gtttccgagt ccgcgtttcg aggccgccga agccgccgag
      661 caagccgtgc tcgaaatcct gcgtcgggcg atcggctacc gggtgcgact gccatgagcg
      721 acggatgcat cacccgcgtg gtcggcgcgc tcgccgaagc ctccggcatg cgcgacgcga
      781 ggctcaatga gctcgtgcgg gtcggcgcgg cggggctgca gggtgaagtg ctgcgcgtgg
      841 cgggcgacag cgcgaccttg caggtgttcg aggatacggg cggactgacg ctcggcgaac
      901 cggtgcgccg caccggcggg ccgctttttg ccgagctcgg acccggcctg ctcggcaccg
      961 tcttcgacgg cattggccgc ccgctggcgc gactggccga tcgcaccggc gacttcatgg
     1021 gagcaggcgt ggagctgccg acgctggatc gcgcgtgccg gcatgaattc cggccatcgg
     1081 tcgccgtggg catcgaggtc ggaccgggcg acacgctcgg tcaggtcaac gagcgtggac
     1141 tcgtgcacca cgtcctcgtt ccgccggggc ggcgcggccg gctgcgcacc attcgcgcgg
     1201 gcgcctggcg cgtcgacgaa ccgtttgcgg aactcgacga cggcaccgcg ctcacgctgc
     1261 tgcaacgctg gcccgtgcgc cgaccccgtc ccgtggcggc acgcctgccc tacaaccggc
     1321 ccttcatcac cgggcagcga atcttcgact tcctgttccc cgtggccgaa ggcggcgcgg
     1381 tcgccgtgcc cggcggcttc ggcacgggca agaccgtgat cgagcagtcg ctggccaagt
     1441 tcgccgacgc cgatgtcgtc gtttatgtgg gctgcggcga gcgcggcaac gagatggccg
     1501 acgtgctcgc cgattttgcc aagctcgtcg atccgcgccg cggcacgccc gcgctcgatc
     1561 gcacggtgct cgtcgtcaac acgtccaaca tgccggtcgc cgcccgcgag gcgtcgatct
     1621 atctcgggct gaccatcgcc gagtactacc gcgacatggg gtaccgcgtc gcagtcatgg
     1681 ccgattcgct gtcgcggtgg gccgaagcgc tgcgcgagat cggttcgcgc ctgcagcaga
     1741 tgccgggcga ggaaggctac cccacctacc tcgccagccg ggtcgcgagc ctgcacgagc
     1801 gcgcgggacg ggtccgctgc gccggacagc cggagcgctg cggcgcggtc acgttgatcg
     1861 gcgcggtttc tccgcccgga ggcgactttt ccgagccggt gacgcaggcg tgcatgcgcg
     1921 tcgccggcgc gttgtgggcc ctcgacgccg agctcgcgca ccagcggcag tttcctgcgg
     1981 tcgattggca cgcgagctac agcctgtacg tgggggtggt ggaaggttgg ttcgcgcagg
     2041 ctgtcgacgc gcgctggccg gcgttgcgcg cgcagatgct cgcgctgctg cagcgcgacg
     2101 ccgaactgcg cgaagtggcc gccatcgtcg gccccgaggc gctggaggac gccgaccgcg
     2161 tcacgctggc cggtgcggcg gcggtgcgcg aactcgttct cggccagagc gcgttcgacg
     2221 ccgaggatgc cttttgcgca cccgccaaga cgttcgcgct cgcgca
//
LOCUS       DASVHM010000003         1557 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_649334, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000003 DASVHM010000000
VERSION     DASVHM010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_649334"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..516)
                     /locus_tag="VF308_00035"
     CDS             complement(19..516)
                     /locus_tag="VF308_00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020228104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEX7435069.1"
                     /translation="MKFPVVVARSLVAMFAAVAVVAAAAHDTTVGEIAIEHPYATPSL
                     AGTTTGAAYFVALENTGAKPDKLVRASTPVAASVEMHTMSVDAQGVMRMREVDGIALA
                     PKQSVRMRPGMGDHLMLVGLKRPLKEGETFAMTLQFERAGKVEVKVVVQTPRASAAMP
                     DMHMH"
     gene            548..>1557
                     /gene="ruvB"
                     /locus_tag="VF308_00040"
     CDS             548..>1557
                     /gene="ruvB"
                     /locus_tag="VF308_00040"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEX7435070.1"
                     /translation="MSIQTDDFAPAPLGAARVVSAAPASPNEEAIERALRPKGLAEYV
                     GQTKAREQLEIFIGAAKMRSEAMDHVLLFGPPGLGKTTLSHIIANELGVKLRSTSGPV
                     LEKPKDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSI
                     KLELQPFTLIGATTRAGMLTNPLRDRFGIVTRLEFYSPEELARIIHRSAGLLKVPLDA
                     AGGYEIARRARGTPRIANRLLRRVRDFADVKGGGQITKPLADQALAMLDVDTLGLDVM
                     DRKLLEAVVHRFDGGPVGLDNVAAAIGEERDTIEDVIEPFLIQQGFLQRTPRGRVATL
                     AA"
BASE COUNT          257 a          553 c          517 g          230 t
ORIGIN      
        1 ccgaacgccc ggcgggcgtc aatgcatgtg catgtcgggc atcgctgcgg aagcacgcgg
       61 cgtctgcacg acgaccttga cctcgacctt gccggcgcgc tcgaactgca gcgtcatcgc
      121 gaacgtctcg ccttccttca agggccgctt caggccgacc agcatgaggt ggtcgcccat
      181 ccccggccgc atccggacag actgcttcgg cgcgagcgcg atgccgtcga cctcgcgcat
      241 ccgcatgacg ccttgcgcgt cgacgctcat ggtgtgcatc tcgacgctgg cggcgaccgg
      301 cgtcgatgcg cgcacgagct tgtcgggctt ggcgccggtg ttctcgagcg ccacgaaata
      361 ggccgctccg gtcgtcgtgc cggccaggct cggcgtcgcg tagggatgct cgatcgcgat
      421 ctcgccgacc gtggtgtcgt gcgctgcggc agcgacgacc gcgacggcag cgaacatggc
      481 gaccagcgag cgcgcgacga cgacgggaaa cttcatcgag ccagtctacg ctgcccataa
      541 tcgccccatg agcatccaga ccgacgactt cgcgccggca ccgcttggcg ccgcgcgcgt
      601 tgtcagcgcc gcgccggcct cgcccaacga agaggcgatc gagcgcgcgc tgcgcccgaa
      661 gggcctcgcc gaatacgtgg gccagaccaa ggcgcgcgag caactcgaga tcttcatcgg
      721 cgcggcgaag atgcgcagcg aagcgatgga ccacgtgctg ctgttcggcc cgccgggact
      781 cggcaagacg acgctcagcc acatcatcgc caacgagctc ggcgtgaagc tgcgctcgac
      841 ctccggaccg gtgctggaaa agccgaaaga cctggccgcg ctgctcacca acctcgagcg
      901 caacgacgtg ctcttcatcg acgagatcca tcgtctgagc ccggtcgtcg aggagatcct
      961 gtatccggcg ctggaggact accagatcga catcatgatc ggcgaaggcc cggccgcgcg
     1021 ctcgatcaag ctcgagctgc aaccgttcac gctgatcggt gcgacgacgc gcgccggcat
     1081 gctgaccaac ccgctgcgcg accgcttcgg catcgtcacc cgcctcgagt tctattcgcc
     1141 cgaggaactc gcgcgcatca tccaccgctc cgccggcctg ctgaaggtgc cgctcgacgc
     1201 ggccggcggc tacgagatcg cgcgccgcgc gcgcggcacg ccgcgcatcg cgaaccggct
     1261 tttgcggcgt gtgcgcgact tcgccgacgt gaagggcggc ggtcagatca ccaagccgct
     1321 cgccgatcag gcgctggcga tgctcgacgt cgacacgctc gggctcgacg tgatggacag
     1381 gaagcttctc gaagccgtgg tgcaccgctt cgacggcggg ccggtcggcc tcgacaacgt
     1441 ggccgcggcg atcggcgagg agcgcgacac gatcgaggac gtgatcgagc cgttcctgat
     1501 ccagcaaggg ttcttgcagc gcacgccgcg cggccgcgtc gccacgctgg ccgcata
//
LOCUS       DASVHM010000004         3246 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1370471, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000004 DASVHM010000000
VERSION     DASVHM010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3246
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1370471"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..793
                     /gene="nthA"
                     /locus_tag="VF308_00045"
     CDS             149..793
                     /gene="nthA"
                     /locus_tag="VF308_00045"
                     /EC_number="4.2.1.84"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018822 - nitrile hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0050898 - nitrile metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrile hydratase subunit alpha"
                     /protein_id="HEX7435071.1"
                     /translation="MDDSHGHDPAHDHDHEHEHSELGEMDLRVRALESVLTEKGYIDP
                     AALDALIDTYQTRIGPRNGARVVARAWIDPVYREWLQRDATAAIASLGYSGRQGEHMI
                     ALENTAARHNLVVCTLCSCYPWPVLGLPPTWYKSAPYRSRAVSDPRGVLADFGVTLPE
                     STAIRVWDSTAEVRYLVIPRRPPGTEDLTEDELADLVSRDSMIGTGLAKTPENR"
     gene            790..1455
                     /gene="nthB"
                     /locus_tag="VF308_00050"
     CDS             790..1455
                     /gene="nthB"
                     /locus_tag="VF308_00050"
                     /EC_number="4.2.1.84"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018822 - nitrile hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0050898 - nitrile metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrile hydratase subunit beta"
                     /protein_id="HEX7435072.1"
                     /translation="MTPPYVTHADLGGRSGFGPVTPEPEADIFHTAWEPRALALTLAM
                     GATGSWNIDMSRAARETLPDYANLGYYQIWLRGLETLLATRGLAGPEEIASGRATEAP
                     RPVARVLHAAEVAGVLAKGSATERPAGAPARFEVGDRVRARAEAVDHHTRLPGYARGR
                     TGIVERIHGVHVFADAHAHGLGEQPQWLYSVAFDEAEIWPDRPRQGSTVSIDAWEPYL
                     AAA"
     gene            1452..1820
                     /locus_tag="VF308_00055"
     CDS             1452..1820
                     /locus_tag="VF308_00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0050898 - nitrile metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrile hydratase accessory protein"
                     /protein_id="HEX7435073.1"
                     /translation="MTSAPLAPWPGLASGTDDPIFREPWEAHAFALALALHRRGVFTW
                     TEWAAALARQIEAAQAHGDADLGDTYYRHWLAALEAIVAEKGAGSTDELARYRDAWDH
                     AAERTPHGQPIELRSADFNA"
     gene            complement(1882..2589)
                     /locus_tag="VF308_00060"
     CDS             complement(1882..2589)
                     /locus_tag="VF308_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435074.1"
                     /translation="MAELLQVSGLTSGYGEAVVVQGVDLVLPQGQSLALLGRNGTGKT
                     TLMNTLIGVTRRHAGRIVLAGQDITALPPHARAAAGIGWVPQERNIFKSLTVDENLTA
                     VARPGPWMPQRAYEMFPRLAERKANMGNQLSGGEQQMLAVARALMLNPKLLLLDEPLE
                     GLAPIIALELLRSIARLVRDEGMSAIIVEQNPRMILPITERAVVLDRGAVVHEGDSAE
                     LLADQARLDHWLAVAKH"
     gene            complement(2582..>3246)
                     /locus_tag="VF308_00065"
     CDS             complement(2582..>3246)
                     /locus_tag="VF308_00065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435075.1"
                     /translation="GPNGAGKTTLINLLTGVLEPTSGSVVLDGADITHLGAHRRVRRG
                     IVRTFQINQLFNELTPLQSLALAVSVHLGLSAQWWSPLGADARVAAECETLLTRFHLA
                     EVMNQKVALLAYGKRRLLEIATALACQPRVLLLDEPVAGVPEGERQEIFDTINALPAD
                     VSVLLIEHDMDLVFNFARTVTVLVNGKVFAEGDVETISNDPKVKAVYLGEQDPVEGMA
                     NG"
BASE COUNT          505 a         1156 c         1124 g          461 t
ORIGIN      
        1 ggctcgccga gcagccgggg taccgcgggt gtggtcatcg tggaggtgaa ggagaaaccg
       61 agagactaca cgccacaggc aattcggttg cgcgcgccgc gcgatctggc gccaccgctg
      121 cacattcttt tggagctagg atgcctgcat ggacgattcc cacggccacg acccggcgca
      181 cgaccatgac cacgagcatg agcacagtga actcggcgag atggacctgc gggtgcgcgc
      241 gctcgaatcg gtgctgaccg aaaagggcta catcgatccg gccgccctcg acgccctgat
      301 cgacacctac cagacccgca tcggcccgcg caacggcgcc cgggtcgtcg cccgggcctg
      361 gatcgatccg gtctatcgcg aatggctgca gcgcgacgcg acggcggcga tcgcctcgct
      421 cggctacagt ggccgccagg gcgagcacat gatcgcgctc gaaaacaccg ccgcccggca
      481 caacctcgtc gtctgcacgc tgtgcagctg ctatccgtgg ccggtgctcg gcctgccgcc
      541 gacctggtac aagagcgcgc cgtatcgatc gcgcgccgtc agcgatccgc gcggcgtgct
      601 cgccgatttc ggcgtcaccc tgcccgagtc gaccgcgatc cgggtctggg attcgacggc
      661 cgaggtgcgc tacctcgtga tcccgcggcg cccgccgggc accgaggacc tgaccgagga
      721 cgaactcgcc gatctcgtca gccgcgactc gatgatcggc accgggctgg cgaagacgcc
      781 ggaaaaccga tgacgccacc ctatgtcacg cacgccgacc tcggcggccg cagtggcttc
      841 ggcccggtga cgcccgaacc cgaggccgac atcttccaca ccgcatggga gccgcgcgcg
      901 ctggcgctga ccctcgccat gggcgcgacc ggctcgtgga acatcgacat gagccgcgcc
      961 gcgcgcgaaa ccctgcccga ctacgcgaac ctcggctact accagatctg gctgcgaggt
     1021 ctggaaacgc tgctggcgac gcgcggcctc gccggccccg aagagatcgc gagcggccgc
     1081 gccaccgaag cgccgcgacc ggtcgcacgg gtgctccacg cggccgaggt cgcgggcgtg
     1141 ctcgcgaaag ggtcggcgac cgaacgaccg gccggcgcac ccgcgcgctt cgaggtcggc
     1201 gaccgggttc gcgcgcgcgc cgaggcggtc gaccatcaca cgcgcctgcc gggctatgcg
     1261 cgcggccgca cggggatcgt cgagcgcatc cacggcgtcc atgtgttcgc cgatgcgcac
     1321 gcgcacggct tgggcgagca gccgcagtgg ctctacagcg tcgccttcga cgaagccgag
     1381 atctggccgg accgcccgcg acagggatcg acggtgtcga tcgacgcgtg ggagccatac
     1441 ctggcagccg catgacgagc gcaccgctcg cgccgtggcc cgggttggcc tccggcacgg
     1501 acgacccgat ttttcgcgag ccgtgggagg cgcacgcgtt cgcgctggcg ctggcgctgc
     1561 atcggcgcgg cgtgttcacc tggaccgagt gggccgcggc gctcgcccgg cagatcgagg
     1621 ccgcgcaggc ccatggcgac gccgacctcg gcgacaccta ctaccggcac tggctcgccg
     1681 cgctcgaggc gatcgtcgcg gaaaaaggag ccggctcgac cgacgagctc gcgcgctatc
     1741 gcgacgcctg ggatcacgcc gccgagcgca cgccgcacgg ccagccgatc gaactgcgca
     1801 gcgccgactt caacgcctga gacgcgccgg cgcgaagcgg cttcgatcgc tccctgttgt
     1861 aatccatggc ccgcgcgcat ctcagtgctt cgcgaccgcg agccagtggt cgagccgcgc
     1921 ctggtcggcg agcagctccg cgctgtcgcc ctcgtgcacc acggcgccgc ggtcgaggac
     1981 cacggcgcgc tcggtgatcg gcaggatcat gcgcgggttc tgctcgacga tgatcgccga
     2041 catgccttcg tcgcgaacca gccgcgcaat cgagcgcaac agctccaggg cgatgatcgg
     2101 cgccagccct tcgagcggct cgtcgagcag cagcaacttc gggttgagca tgagcgcgcg
     2161 cgccaccgcc agcatctgct gctcgccgcc ggagagctgg ttgcccatgt tggccttgcg
     2221 ttcggccagg cgcggaaaca tctcgtacgc gcgctgcggc atccacgggc cgggccgtgc
     2281 aaccgcggtg aggttctcgt cgaccgtcag cgacttgaag atgttgcgct cctgcggcac
     2341 ccagccgatg ccggcggcgg cccgcgcatg cggtggcagc gcggtgatgt cctgcccggc
     2401 gaggacgatg cgcccggcat gccggcgcgt cacgccgatg agcgtgttca tcagcgtcgt
     2461 cttgccggtg ccgttgcggc cgagcagcgc gagcgactgg ccctgcggca gcacgaggtc
     2521 gacgccctgc acgacgacgg cctcgccgta acccgaggtg aggccgctga cctggagcag
     2581 ctcagccatt ggccatccct tcgaccgggt cctgctcgcc gaggtacacc gccttgacct
     2641 tcgggtcgtt cgaaatggtc tcgacgtcgc cctcggcgaa caccttgccg ttgaccagca
     2701 cggtgaccgt gcgcgcgaag ttgaacacca ggtccatgtc gtgttcgatc agcagcaccg
     2761 agacgtcggc cggcaacgcg ttgatcgtgt cgaagatctc ctggcgttcg ccttcgggaa
     2821 cgccggcaac cggctcgtcg aggagcagca cgcgcggctg gcaggccagc gcggtcgcga
     2881 tctcgaggag gcgccgcttg ccgtaggcaa gcagcgcgac cttctggttc atcacctcgg
     2941 cgaggtgaaa ccgcgtcagc agcgtttcgc attcggcggc gacgcgagca tcggcgccga
     3001 gcgggctcca ccactgggcg ctgagcccaa ggtgcaccga caccgcgagg gcgagcgact
     3061 gcagcggcgt cagctcgttg aaaagctggt tgatctggaa cgtgcggacg atgccgcgcc
     3121 gcacacgccg gtgggcgccg aggtgggtga tgtccgcgcc gtcgagcacg accgaacccg
     3181 aggtcggttc gagcacgccg gtcagcaggt tgatcagcgt cgtcttgccg gcgccgttcg
     3241 ggccga
//
LOCUS       DASVHM010000005         5796 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1370489, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000005 DASVHM010000000
VERSION     DASVHM010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5796
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1370489"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..799)
                     /locus_tag="VF308_00070"
     CDS             complement(<1..799)
                     /locus_tag="VF308_00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018442724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7435076.1"
                     /translation="MFKRELFNEDHEAFRDTVRRFVENEIAPHHAAWEAAGVVPRELW
                     RKAGAAGMLCCTVPERYGGSGVDYLFDVVVFEEMARSGFTGPGFMIHCDLVATYIATF
                     GSEAQRQQWLPKMVTGEAIGSLAMTEPHAGSDLKAIKTKAVRHGDDYLISGQKVFISN
                     GQLCDVIVLATKTDSSAGAKGVTLFLVDTSLPGFRRGKNLHKLGMKAQDTSELFFDEV
                     RVPASAMLGEEGKGFELMMTKLAQERLAQAIRSATVAETVIGWTVEYT"
     gene            1077..2303
                     /locus_tag="VF308_00075"
     CDS             1077..2303
                     /locus_tag="VF308_00075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX7435077.1"
                     /translation="MQVLHTRCAGLDVHKDTIVACVRCVSPPMHQEVRSFGATTSQLL
                     ELAEWLAEHGCTHVAMEATGVYWKPVWHVLEADFELVLANAAHIRNVPGRKTDVNDAM
                     WIADLLAHGLIRSSFVPPQAIQQLRDLTRTRKQLVREVSQHSLRIQKVLEDANLKLAS
                     VLSDVLGRSGRAMLDAIVAGQSDPVRLAELAQGTARHKSAELREALRGRITEHHRTML
                     RLHLQVIDALQRTLAELDAAVGKALAPIQQRARLLTTMPGVSDLTASVLVAEIGVDMT
                     RFPSAGHLISWAGLCPRSDESAGKRRSTRVRKSGTWIKTTLVTAAWAAVRVKTSYLRA
                     QFLRIKARRGAKKAILAVAASMLTAAYHMLRDGTEYSDLGSEHFDRHDRSKTIRRLLK
                     RLQDLGCDVPELAHAT"
     gene            complement(2310..3476)
                     /locus_tag="VF308_00080"
     CDS             complement(2310..3476)
                     /locus_tag="VF308_00080"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012205503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7435078.1"
                     /translation="MDFSVSEDQRAIRDGVSAVVRSFDDEYWLARDDDGIFPREFHRA
                     MADAGWLGITMPQEYGGAGLGVTEAVIMLHEVASHGGAMAAASTVHINLFGPHPIVVF
                     GTPDQRQRWLPNLVEGKDQCCFGFTEPDAGLNTTAIKTFAQKVPGGYKVHGQKVWTST
                     AQVANKIMLLTRTTKLEDCTRPTDGITIFYTDLDRSKIDVHRIAKMGRKAVDSNSIFI
                     DDLFIPESDRVGEEGKGFSYILHSLNPERLLVAAEAIAIGQDALRRATKYARERVVFD
                     RPIGKNQGIQHPLAERWMALEAAWAMTMKGAWLYDQHQPCGAEANAAKFLGARAGFDS
                     CLQAVLTLGGFGYAKEYHVERLLREVTITRIAPVTEQLILSFIAEKVLDLPKSY"
     gene            complement(3508..4398)
                     /locus_tag="VF308_00085"
     CDS             complement(3508..4398)
                     /locus_tag="VF308_00085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020656117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HEX7435079.1"
                     /translation="MSAAPGALRLRSMLFVPADSERKLAKSIGSPADVLILDLEDSVA
                     EAHKAGARASAAEFIGAHAAQLASRLFVRINPLDTGLAMGDLAAVVVPGLAGIMLPKT
                     HGAADVVRLGHCLDALEARAGIAPGTVRIVPVATETAQAILNMQSFADPLPRLAGITW
                     GAEDLSSAIGAVANREEDGSWSPLYALANSLCLCAAAAAGVPAIDTLHADFRDAAGLA
                     AACRASRRRGFGGRIAIHPDQVAPINEAYTPSEAERAHAQRIVDAFAAHPEAGTLSLD
                     GVMIDKPHLTQALRTLGLAG"
     gene            complement(4395..4847)
                     /locus_tag="VF308_00090"
     CDS             complement(4395..4847)
                     /locus_tag="VF308_00090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HEX7435080.1"
                     /translation="MAGLWFGEFSIGQTFEHEIRRTVTEADNMWFSNATCNPAAIPID
                     YEYCKGTEFGRPLVNSIFTLGLVIGLSVQETTLGTTVANLGMTDTRFPAPVFPGDTIR
                     SRTTVKEIRESKSRPNAGIVTFLHQGFNQRGEEVCTCTRQALMLKAPA"
     gene            4967..>5796
                     /locus_tag="VF308_00095"
     CDS             4967..>5796
                     /locus_tag="VF308_00095"
                     /inference="COORDINATES: protein motif:HMM:NF028194.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEX7435081.1"
                     /translation="MTSSVNRQVLLKSRPDGIPQAGHFEIVATPVPVPGPGQVLVRNA
                     WLSVEPAMRGWVSAVANYSEPVAVGAVMRAFAAGHVAASNDPAWPVGTPVTGLFGWQD
                     YALVDPRAIQRRVDEIDLPLSTALGVLGINGVAAHYGLQQLGQPKAGETVVVSTAAGA
                     VGSCAGQIARLRGCRTVGITGGAVKRQLCLERFRFDAAVDYKAADFAEGLAQACPEGV
                     DVYFDNTAGPISDAVMTHLKVGARVVICGTASVPAWSPPPQGPRVERHLLVKRARMQG
                     "
BASE COUNT          871 a         1939 c         2015 g          971 t
ORIGIN      
        1 cggtgtattc gaccgtccag ccgatcaccg tctcggcgac cgtcgccgaa cggatcgcct
       61 gggcgagtcg ctcctgggcg agcttggtca tcatcagctc gaagcccttg ccttcctcgc
      121 cgagcatcgc cgaggccggc acccgcacct cgtcgaagaa gagttcggac gtgtcctgcg
      181 ccttcatgcc gagcttgtgc aggttcttgc cgcgccggaa tcccggcagg ctggtatcga
      241 ccaggaacag ggtgacgccc ttcgcgccgg ccgagctgtc ggtcttggtg gcgagcacga
      301 tcacgtcgca gagctggccg ttcgagatga agaccttctg gcccgagatg aggtagtcgt
      361 cgccgtggcg caccgccttg gtcttgatcg ccttcaggtc cgagccggcg tgcggttcgg
      421 tcatggcgag cgatccgatc gcctcgcccg tcaccatctt cggcagccac tgctgcctct
      481 gcgcctcgct gccgaaggtg gcgatgtagg tcgcgaccag gtcgcagtgg atcatgaagc
      541 cggggccggt gaacccggag cgcgccatct cctcgaacac gaccacgtcg aagaggtagt
      601 cgacgccgct tccgccgtag cgttcgggca cggtgcagca gagcatcccg gcggcaccgg
      661 ccttgcgcca cagttcgcgc ggcaccacgc ccgcggcttc ccaggcggcg tggtgcggcg
      721 cgatctcgtt ctcgacgaag cgccgcaccg tgtcgcggaa cgcttcgtgg tcttcgttga
      781 acagttcacg cttgaacacg ttgacttcct cagtagttcg ccatcggacg agcccgaccc
      841 cggcgcatga agcgggggcc gcggctggcg tgcaatgacg ggtggtcgta ggatgaagcg
      901 gggcgctgct gacgaggtcg gcgtttgctt ggtgttgcga acccgttcag tagttggacc
      961 cgcagtcctg cgagcacccc ggaatgtggc agagggcggc gacgccccga agcacgccta
     1021 gtagagttcg atgacgagga ctgcctgcgg tgccccacaa ctgaaagggg gttctcatgc
     1081 aagtgcttca tacgcgctgc gcggggctgg acgtgcacaa ggacaccatc gtggcctgcg
     1141 tgcgttgcgt ctcgccaccg atgcaccagg aggtgcgcag ctttggcgcc acgacctcgc
     1201 aattgctcga actggccgag tggctcgcag agcacggctg cacgcacgtg gcgatggagg
     1261 ccaccggcgt gtactggaag ccggtgtggc acgtcctgga ggccgacttt gagctggtgc
     1321 tggccaacgc cgcgcacatc cgcaacgtgc ccgggcgcaa gaccgacgtc aacgacgcga
     1381 tgtggatcgc cgatctgctc gcgcacggcc tgatccgctc gagcttcgtt ccgccgcagg
     1441 ccatccagca gttgcgcgac ctcacgcgca cccgcaagca gctcgtgcgg gaggtctccc
     1501 agcactcgct gcgcatccag aaggtgctgg aggacgccaa cctcaagctc gccagcgtgc
     1561 tgtcggatgt gctcgggcgc agcggccgcg cgatgctcga tgcgatcgtg gccggccaga
     1621 gcgaccccgt tcgactggcc gagctcgctc agggcacggc gcgccacaag agtgccgagc
     1681 tgcgtgaggc gctgcgtgga cgcatcaccg agcatcaccg cacgatgctc agactgcacc
     1741 tgcaggtcat cgacgcgctg cagcgcacgc tcgccgagtt ggacgcggcc gtgggaaagg
     1801 cgctggcgcc gatccagcag cgcgcccgcc tgctgacgac gatgcccggg gtcagtgacc
     1861 tgacggccag cgtcttggtg gcggagatcg gcgtggacat gacgcgcttc cccagcgccg
     1921 ggcatctcat ctcctgggcc gggctgtgcc cgcgcagcga cgagagcgcc ggcaagcgcc
     1981 gatccacgcg cgtgcgcaag agcggcacct ggatcaagac caccctggtg accgccgcct
     2041 gggccgcggt gcgcgtcaag accagctacc tgcgcgccca gttcctgcga atcaaggccc
     2101 gccgcggcgc caagaaggca atcctcgccg tcgcggcctc catgctgacc gccgcttacc
     2161 acatgctgcg cgacggcacc gagtacagcg acctcggcag tgaacacttc gaccgccacg
     2221 acagatccaa gaccatccgc cgcctgctca agcggctcca agatctcggc tgcgatgttc
     2281 ctgaactggc ccatgcgacg tagagcttct tagtaggatt tcggcaggtc cagcaccttc
     2341 tcggcgatga acgacaggat cagttgctcg gtcaccggcg cgatgcgcgt gatcgtcact
     2401 tcgcgcagca agcgttcgac gtggtattcc ttggcgtagc cgaagccgcc gagcgtgagc
     2461 accgcctgca ggcacgagtc gaagccggcc cgtgcgccaa gaaacttggc cgcattggcc
     2521 tcggcgccgc acggctggtg ctggtcgtag agccaggcac ccttcatcgt catcgcccag
     2581 gcggcctcga gtgccatcca gcgttcggcg agcgggtgct ggatgccctg gttcttgccg
     2641 atcgggcggt cgaagacgac ccgttcgcgc gcgtacttgg tggcgcgccg cagcgcgtcc
     2701 tggccgatcg cgatcgcttc ggccgcgacc agcagccgct ccgggttcag gctgtggagg
     2761 atgtacgaga agcccttgcc ttcctcgccg acccggtcgc tctcggggat aaacaggtcg
     2821 tcgatgaaga tcgaattcga gtcgaccgcc ttgcgtccca tcttcgcgat gcggtgcacg
     2881 tcgatcttgc tgcggtcgag gtcggtgtag aagatcgtga tgccgtcggt cgggcgcgtg
     2941 cagtcctcga gcttggtcgt gcgcgtcagc agcatgatct tgttggccac ctgcgcggtc
     3001 gaagtccaga ccttctgacc gtgcaccttg tatccgccgg gcaccttctg ggcgaaggtc
     3061 ttgatcgcgg tcgtgttgag gccggcatcg ggctcggtga agccaaagca gcactggtcc
     3121 ttgccttcga cgagattcgg cagccagcgc tggcgctgat ccggcgtgcc gaacacgacg
     3181 atcggatgcg ggccgaacag gttgatgtgc acggtcgagg ccgccgccat ggcgccgccg
     3241 tggctcgcga cctcgtgcag catgatgacg gcctctgtca cgccgagccc cgcaccgccg
     3301 tactcctgcg gcatcgtgat gccgagccag ccggcatcgg ccatcgcgcg gtggaactcg
     3361 cgcgggaaga tgccgtcgtc gtcgcgcgcg agccagtatt cgtcgtcgaa cgagcgcacg
     3421 acggcgctga cgccgtcgcg gatcgcgcgc tggtcttcgc tgaccgaaaa gtccatgggt
     3481 cgtctccggg gtctgtcggg tcttgtctca gccggccagg ccgagcgtgc gcagggcctg
     3541 ggtgaggtgc ggcttgtcga tcatcacgcc gtcgaggctg agcgtgccgg cctcggggtg
     3601 cgccgcgaag gcgtcgacga tgcgctgcgc gtgggcgcgc tcggcctcgg acggtgtgta
     3661 ggcctcgttg atcggcgcga cctggtcggg gtggatcgcg atgcggccgc caaagccgcg
     3721 ccggcgcgag gcccggcatg cggcggcgag gccggccgcg tcgcggaagt cggcatggag
     3781 ggtgtcgatg gccggcacgc ccgccgccgc agccgcgcac aggcagagcg aattggcgag
     3841 cgcgtagagc ggcgaccagc tgccgtcctc ctcgcgattg gccaccgcgc cgatcgcgga
     3901 cgacagatcc tccgcgcccc aggtgatgcc ggccaggcgc ggcagcggat cggcgaagct
     3961 ctgcatgttg agaatcgcct gcgccgtctc ggtcgcgacc ggcacgatgc gcaccgtgcc
     4021 cggcgcgatg ccggcgcgcg cttccagcgc gtcgaggcag tggcccaggc gtacgacgtc
     4081 ggccgcgccg tgggtcttcg gcagcatgat gccggcgagc cccggcacca cgaccgcggc
     4141 gaggtcgccc atcgcgaggc ccgtgtcgag cgggttgatg cgcacgaaga ggcgcgatgc
     4201 gagttgtgcc gcatgcgcgc cgatgaattc ggcggcgctg gcgcgcgcgc cggctttgtg
     4261 cgcctcggcc accgaatcct cgaggtcgag gatcaacacg tcggccggac tgccgatcga
     4321 cttggcgagc ttgcgttcgc tgtcggccgg aacgaacagc atcgagcgca gccggagggc
     4381 tcccggggcc gcgctcatgc gggcgccttc agcatcagcg cctgccgcgt gcaggtgcag
     4441 acctcttcgc cgcgctggtt gaagccttgg tggaggaagg tcacgatgcc ggcgttcggc
     4501 cgcgacttgc tctcgcggat ctccttgacc gtcgtgcgcg agcggatcgt gtcgccgggg
     4561 aacacagggg caggaaagcg cgtgtcggtc atgccgagat tggcgacggt cgtgcccagc
     4621 gtcgtctcct ggaccgagag cccgatcacc agcccgagcg tgaagatgct gttgaccagc
     4681 gggcgcccga actcggtacc cttgcagtat tcgtagtcga tggggatcgc ggccgggttg
     4741 caggtcgcgt tgctgaacca catgttgtcc gcctcggtca cggtgcggcg gatctcgtgc
     4801 tcgaacgtct gcccgatgct gaattctccg aaccatagcc ctgccatcgg tatttcccct
     4861 cgaagattgt gttgggttca gcgtatggat atacatggta cgcatgtgta ctatagcaaa
     4921 gcgattcgtt ttgcaactcg ggttcgacca tgatggagag cgcgcgatga catcctccgt
     4981 gaaccgccag gtgctcctga agagccgtcc cgacggcatt ccgcaagccg ggcatttcga
     5041 gatcgtcgcc acgccggttc cggtgccggg accgggccag gtgctggtgc gcaacgcctg
     5101 gctctcggtc gagccggcga tgcgcggctg ggtcagcgcg gtggccaact attcggagcc
     5161 ggtggccgtg ggcgcggtga tgcgcgcctt cgccgcgggg cacgtcgcgg cctcgaacga
     5221 tccggcgtgg ccggtgggca ctcccgtcac gggccttttc ggctggcagg actacgcgct
     5281 cgtcgacccc cgggcgatcc agcgccgcgt cgacgagatc gacctgccgc tttccaccgc
     5341 cctcggggtg ctcggcatca acggcgtcgc cgcgcactac ggcctgcagc agttgggcca
     5401 gccgaaggcc ggcgagacgg tggtggtctc gaccgcggcg ggtgcggtcg gttcgtgcgc
     5461 cggacagatc gcgcgcttgc gaggctgccg cacggtgggc atcaccggcg gcgcggtcaa
     5521 gcgccagctt tgcctcgaac gcttccgttt cgatgcggcg gtcgactaca aggcggccga
     5581 cttcgccgag ggcctggcgc aggcctgccc ggagggcgtc gacgtctact tcgacaacac
     5641 cgccggcccg atcagcgacg cggtgatgac ccacctcaag gtcggcgcgc gcgtcgtgat
     5701 ctgcggcacc gcatcggtcc ccgcctggag cccgccgccg cagggcccgc gcgtcgagcg
     5761 ccacctgctc gtcaagcgcg cgcgcatgca gggctt
//
LOCUS       DASVHM010000006         3358 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_433211, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000006 DASVHM010000000
VERSION     DASVHM010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3358
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_433211"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..1206)
                     /locus_tag="VF308_00100"
     CDS             complement(28..1206)
                     /locus_tag="VF308_00100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007830630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435082.1"
                     /translation="MSKRTLIHAALGLAATAAGFGVQAQGTPFKIGFILPMTGQSAST
                     GKQIEAAVKLYMAQNGATVSGRKIEVIVKDDAGVADTTRRIAQEFVVNEKVDVLAGFG
                     LTPLALATAPIATQSKTPMVVTAAATSIITEQSPYIVRTSFTLPQVAVSIAEWAAKNK
                     IRKVVTFVADYGPGLDAEKFFKSQFKLNGGEITGEIRSPLRSPDFAPFLQKVADLKPD
                     AVFVFLPSGQGAAFMKQFGERGLDKSGIRLIATGDVTDDDQLNDIGDVALGVVNSHHY
                     SAAHPSATNKKFVQAFEAANKFRPNFMAVAGYDGMRVIYKALEATKGAGGGDALLAAM
                     KGQVFESPRGPVLIDAQTRDIVQDIYIRRVERVPSMGNQLYNVEFDVQKAVKDPAKTK
                     "
     gene            1548..2660
                     /locus_tag="VF308_00105"
     CDS             1548..2660
                     /locus_tag="VF308_00105"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006298407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003871 -
                     5-methyltetrahydropteroyltriglutamate-homocysteine
                     S-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEX7435083.1"
                     /translation="MTIRNHPPFRADHVGSFLRPKRLLEARERHQKGELSKEGLRAVE
                     DDAIADIVKFQEDVGLESITDGEFRRTYFHIDFLEQLGGVKTDVPVTIQKPDGSLELA
                     PPVMRVIDKVRHVKDIQRADFEFLKAQVSPGKTPKVTIPSPTMLHFRGGRAGISREHY
                     PDLEAFYQDVANAYGDELRSLSDAGCTYVQMDDTNLAYLCDDKMREAARSRGDDPDEL
                     PHRYASFINRVVAQKPEGMTLAVHLCRGNFKSTWAAQGGYEPVAEALLSEMGVDGYFL
                     EYDDARSGDFRPLRFLPKGKIVVLGLVTTKLSQLESKDDIKRRIEEAAKFVPLEQLCL
                     SPQCGFSSTVHGNDIAVEAQRAKLRLVVEVAQEVWG"
     gene            complement(2680..>3358)
                     /locus_tag="VF308_00110"
     CDS             complement(2680..>3358)
                     /locus_tag="VF308_00110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435084.1"
                     /translation="YRGTAYVAGQPGNRYAVQLTNRSDARVLVVLSVDGINAISGETA
                     AVGQTGYVLAPYASAEITGWRKSYTEAAAFYFTALADSYAARTDRPDNVGVIGAAVYR
                     ERVWRPEPRAFDRAPPLANKDSAPLSESAARAAPSATSPAQGAAAEAAGSLAAKSEQR
                     LGTGHGEREYSPTSQVAFERASSQPAEIVRVRYDSYRNLVAMGVIGARREPFEPEPFP
                     RFAPDPR"
BASE COUNT          560 a         1125 c         1118 g          555 t
ORIGIN      
        1 ccatagggtc aggccggtcg atgcgcctta cttcgtcttc gccggatcct tcaccgcctt
       61 ctgcacgtcg aattcgacgt tgtagagctg gttgcccatc gagggcacgc gctcgaccct
      121 gcggatgtag atgtcctgca cgatgtcgcg cgtctgtgca tcgatcagca ccggcccgcg
      181 cgggctctcg aagacctggc ccttcatcgc cgcgagcagc gcgtcgccgc cgcccgcccc
      241 cttggtcgcc tcgagcgcct tgtagatgac gcgcatgccg tcgtagccgg ccacggccat
      301 gaagttgggc cggaacttgt tcgccgcctc gaaggcctgc acgaacttct tgttggtggc
      361 cgacggatga gccgccgaat agtggtgcga gttgacgacg ccgagggcga catcgccgat
      421 gtcgttcaac tggtcgtcat cggtcacgtc gccggtggcg atcagcctga tgcccgactt
      481 gtcgagcccg cgctcgccga actgcttcat gaaggccgcg ccctggccgg agggcaggaa
      541 gacgaagacg gcgtcgggct tcagatccgc gaccttctgc aggaagggcg cgaagtcggg
      601 gctcctcagc ggcgagcgga tctcgcccgt gatctcgccg ccgttcagct tgaactggct
      661 cttgaagaac ttctcggcgt cgagccccgg gccgtagtcg gcgacgaagg tgacgacctt
      721 tctgatcttg ttcttggccg cccattcggc gatcgacacc gccacctgcg gaagcgtgaa
      781 gctcgtgcgc acgatgtagg gcgactgctc ggtgatgatc gaggtcgccg cggccgtcac
      841 gaccatcggc gtcttgctct gcgtggcgat cggcgcagtg gcgagcgcga gcggcgtcag
      901 gccgaagccg gcgagcacgt cgaccttctc gttgacgacg aactcctgag cgatgcggcg
      961 cgtcgtgtcg gcgacgccgg cgtcatcctt gacgatcacc tcgatcttgc ggccggagac
     1021 cgtcgcgccg ttctgcgcca tgtagagctt gaccgcggcc tcgatctgct tgccggtcga
     1081 ggccgactgg cccgtcatcg gcaggatgaa gccgatcttg aacggcgtgc cctgcgcctg
     1141 cacgccgaag ccggcggcgg tcgcggcaag cccgagggcg gcgtggatga gagtgcgttt
     1201 gctgatcatg gtgtctccgt ttgacgtgtt cgatcgatcg gggcgatttt ccgtttcaac
     1261 cgaatgtagc aaacaggggt aaacacgctg cgctttgaag atgcgccttg cgaagggacg
     1321 gattggcccg gactgcgttc agggaatttc ttattcactc cgtccgggcc aacccgcccc
     1381 ttcggaccca cgcgtctcga aggacgaagg caccacaatg cctgagcgca gcgaaagcgg
     1441 cgggcccgca gcgaagccct tgcgtcctca tcgaggccat gcgcgaccgc caacatatca
     1501 tcggtgacgc cgactgccat gcgtcgagcc gcttcacagg agaccccatg accatccgca
     1561 atcacccgcc ctttcgcgcc gaccacgtcg gcagtttcct gcgcccgaag cgcctgctgg
     1621 aggcgcgcga acgacaccag aagggggaac tctcgaaaga aggcctgcgc gcagtcgaag
     1681 acgacgcgat cgccgacatt gtcaagttcc aggaagacgt cggcctcgag agcatcaccg
     1741 acggcgagtt ccgccggacc tatttccaca tcgacttcct cgagcagctc ggcggcgtca
     1801 agaccgacgt gccggtcacg atccagaagc ccgacggcag cctggaactg gcgccgccgg
     1861 tgatgcgcgt gatcgacaag gtgcgccatg tgaaggacat ccagcgcgcc gatttcgagt
     1921 tcctcaaggc gcaggtttca ccgggaaaga cgccgaaggt cacgatcccg tcgccgacga
     1981 tgctgcactt ccggggcggc cgggccggca tcagccgcga gcactatccc gacctcgaag
     2041 cgttctacca ggatgtcgcc aacgcctatg gcgacgaact gcgctcgctc agcgacgccg
     2101 gctgcaccta cgtgcagatg gacgacacca acctcgccta cctgtgcgac gacaagatgc
     2161 gcgaggcggc gcgttcgcgc ggcgacgacc cggacgaact gccgcaccgc tatgcgagct
     2221 tcatcaaccg cgtcgtcgcc cagaagcccg agggcatgac gctcgccgtg cacctgtgcc
     2281 gcggcaattt caagagcacc tgggccgccc aggggggcta cgaaccggtg gccgaggcgc
     2341 tgctttccga gatgggcgtc gacggctact tcctcgagta cgacgacgcg cgcagcggcg
     2401 acttccggcc gctgcgcttc ctgccgaaag gcaagatcgt cgtgctcggg ctcgtcacca
     2461 cgaagctcag ccagctcgaa tcgaaggacg acatcaagcg ccgcatcgag gaagccgcga
     2521 agttcgttcc gctcgagcag ctgtgcctct cgccgcagtg cggcttctcg agcacggtgc
     2581 acggcaacga catcgccgtc gaagcgcagc gcgcgaagct gcgcctggtc gtggaggtgg
     2641 cgcaggaagt ctggggctga gggcactccg atttcggcgc tagcgcggat cgggcgcgaa
     2701 gcgcgggaac ggctcgggct caaacggctc gcggcgcgcg ccgatcacgc ccatcgcgac
     2761 gaggttgcga tagctgtcgt agcgcacccg cacaatctcg gcgggctgac tgctggcgcg
     2821 ttcgaaggcg acctgcgagg tcggcgagta ttcgcgttcg ccgtggccgg tgcccaggcg
     2881 ctgctccgac ttggcggcga ggctccccgc cgcttccgcc gccgcgccct gggccggcga
     2941 ggtcgccgac ggcgccgcgc gcgcggccga ttccgacaac ggggctgaat ccttgttcgc
     3001 cagcggcggt gcgcggtcga aggcgcgcgg ctcggggcgc cagacccgct cgcggtagac
     3061 cgcggcaccg atcacgccga cgttgtcggg ccgatcggtg cgggcggcat aagaatcggc
     3121 gagcgcggtg aaatagaagg ccgccgcttc ggtgtagctc ttgcgccaac cggtgatctc
     3181 ggcgctcgcg tagggcgcca gcacatagcc ggtctggccc accgccgccg tctcgccgct
     3241 gatcgcgttg atgccgtcga ccgacagcac caccagcacg cgcgcatcgc tgcggttggt
     3301 caactgcacc gcataacgat tgccgggttg gccggcgaca taagcggtgc cgcggtag
//
LOCUS       DASVHM010000007         1932 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_793751, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000007 DASVHM010000000
VERSION     DASVHM010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_793751"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..637
                     /locus_tag="VF308_00115"
     CDS             <1..637
                     /locus_tag="VF308_00115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011300098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016742 - hydroxymethyl-, formyl- and
                     related transferase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="formyltransferase"
                     /protein_id="HEX7435085.1"
                     /translation="TRGAFNMHGSLLPRYRGRAPTNWAVLHGETETGATLHEMSTKPD
                     AGAIVDQSAVPILPDDTARQVFDKVTVAAEQVLWRSLPALLAGQAPRRPNDLAHGSYF
                     SARKPEDGRIDWSRPAAQVYNLIRAVAPPYPGAFTEVAGKKLVVAAARLRPAGPRPAS
                     GPGLHVVEGHIVGVCGDAAQIDIHQLLAGPTPIDAKSLGALLDAPHPNTRP"
     gene            634..1683
                     /locus_tag="VF308_00120"
     CDS             634..1683
                     /locus_tag="VF308_00120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006160925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-4-keto-pentose/UDP-xylose
                     synthase"
                     /protein_id="HEX7435086.1"
                     /translation="MKKILILGVNGFIGHHLTQRILDTTDWEVYGMDMSSDRLGDLVA
                     HPRMHFFEGDITINKEWIEYNVRKCDVILPLVAIATPATYVREPLRVFELDFEANLPI
                     VRAAVKYRKHLVFPSTSEVYGMCPDAEFDPETSTLVYGPINKPRWIYACSKQLMDRVI
                     AAYGMEQGLNYTLFRPFNWIGSGLDSIFESKEGSSRVVTQFLGQIVRGEPIQLVDGGL
                     QKRAFADISDGLAALMCILANPKGVASGRIYNIGNPANHYSVRELAEMMLAMAAEYPE
                     YAGSASRSRIVETSSGEFYGAGYQDVQNRLPNIAATIAELGWRPTVSMETSLRRIFEA
                     YRTKVVEARALIESA"
     gene            1700..>1932
                     /locus_tag="VF308_00125"
     CDS             1700..>1932
                     /locus_tag="VF308_00125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011519036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-deoxy-4-formamido-L-arabinose-
                     phosphoundecaprenol deformylase"
                     /protein_id="HEX7435087.1"
                     /translation="MARIALKVDVDTLRGTREGVPRLLDVLERAGIAATFLFSLGPDH
                     TGWALRRVFRPGFLSKVSRTSVLTHYGLRTLLYG"
BASE COUNT          335 a          681 c          608 g          308 t
ORIGIN      
        1 cacgcggggc gccttcaaca tgcacggctc gctcctgccc cgctatcgcg gccgcgcccc
       61 gaccaactgg gccgtgctgc acggcgagac cgagaccggc gcgacgctgc acgagatgag
      121 caccaagccc gatgccggcg ctatcgtcga ccagagcgcg gtgccgatcc tgcccgacga
      181 taccgcccgc caggtgttcg acaaggtcac cgtcgcggcc gaacaggtgc tttggcgcag
      241 cctgccggcg ctcctggccg ggcaggcgcc gcgccggccc aatgacctcg cgcacggcag
      301 ctacttctcc gcacgcaagc ccgaagacgg ccgcatcgac tggtcgcggc cggccgcgca
      361 ggtctacaac ctgatccggg ccgtggcgcc gccctatcca ggcgcattta ccgaagtcgc
      421 cggcaagaag ctggtggtcg cggccgcccg actccgcccg gcgggaccac gcccggcgag
      481 cgggcctggc ctgcacgtcg tcgagggcca catcgtcggc gtctgcggag acgcggcgca
      541 aatcgacatc caccagcttc tcgcgggccc gacgccgatc gacgcgaaat cactcggcgc
      601 gctgctcgac gcgccgcacc caaacacacg tccatgaaaa aaatcctgat cctcggcgtc
      661 aacggcttca tcggccacca cctgacgcaa cgcatcctcg atacgaccga ctgggaggtc
      721 tacggcatgg acatgtcgtc cgaccggctc ggcgatctgg tcgcgcatcc gcgcatgcac
      781 ttcttcgaag gcgacatcac catcaacaag gaatggatcg aatacaacgt gcgcaagtgc
      841 gacgtgatcc tgccgctggt cgcgatcgcg acgcccgcca cgtacgtgcg cgaaccgctg
      901 cgcgtgttcg agctcgactt cgaggccaac ctgccgatcg ttcgcgcggc ggtcaagtac
      961 cgcaagcatc tggtgtttcc gtcgacgtcc gaggtctacg gcatgtgtcc cgatgccgaa
     1021 ttcgacccgg agacctcgac gctggtgtac gggcccatca acaagccgcg ctggatctat
     1081 gcctgctcca aacagctgat ggatcgcgtg atcgccgcgt acggcatgga gcaagggctc
     1141 aactacacgc tgtttcgtcc cttcaactgg atcggctcgg gtctcgattc gatcttcgaa
     1201 tcgaaggaag gctcatcgcg ggtggtcacc cagtttctcg gccagatcgt tcgcggcgag
     1261 ccgatccagc tcgtcgacgg cggcttgcag aagcgcgctt tcgccgacat ttccgacggc
     1321 ctggccgcgc tgatgtgcat cctcgccaat ccgaaggggg tggccagcgg gcgcatctac
     1381 aacatcggca atccggcgaa ccactattcg gtgcgcgagc tcgccgagat gatgctcgcc
     1441 atggccgccg aatacccgga atatgcggga tcggccagcc gcagccgcat cgtcgagacg
     1501 tcctcgggcg agttctacgg cgcgggctac caggacgtgc agaaccgcct gccgaacatt
     1561 gccgcgacga tcgccgagct cggctggcgg cccaccgtca gcatggaaac atcgctgcgg
     1621 cgcatcttcg aagcgtatcg aacgaaagtg gtcgaggctc gcgcgctgat cgaaagcgct
     1681 tgaggcccgg cgcctgttca tggcccggat cgcgctgaag gtcgacgtcg acaccttgcg
     1741 cggcacgcgc gaaggcgtgc cgcgcctgct cgacgtgcta gagcgcgcgg gcatcgccgc
     1801 gaccttcctg ttcagcctcg ggccggacca caccggatgg gcattgcgcc gggtgttccg
     1861 gccggggttc ctgtcgaagg tatcgcgcac ctcggtcctc acccactacg gcctgcgcac
     1921 gctgctgtac gg
//
LOCUS       DASVHM010000008         3204 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_865973, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000008 DASVHM010000000
VERSION     DASVHM010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3204
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_865973"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VF308_00130"
     CDS             <1..223
                     /locus_tag="VF308_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435088.1"
                     /translation="RDDARGTWQESHFSWRIRSVLWAGGLYLVTAPLWLLLLIPGWIA
                     WGIISLWFLYRIARGWLNLSSNTPMPMPA"
     gene            234..581
                     /locus_tag="VF308_00135"
     CDS             234..581
                     /locus_tag="VF308_00135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEX7435089.1"
                     /translation="MKRDPGCIFCRIVAGEIPSRKAYEDDEILVFHDIEPWAPVHVLV
                     IPKEHIATFYDVSEAHTALLGRMLALAPRLMRELGVTNGFRTLVNTGVDGRQEVQHLH
                     VHVMGGPRPWAKG"
     gene            619..861
                     /gene="tatA"
                     /locus_tag="VF308_00140"
     CDS             619..861
                     /gene="tatA"
                     /locus_tag="VF308_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HEX7435090.1"
                     /translation="MGSFSVWHWLIVLLIVVLIFGTKKLKNIGSDLGGAVKGFKDGVR
                     DGTASPADPAAPTQRVGAERTLDPGTVDVETKTTRN"
     gene            881..1360
                     /gene="tatB"
                     /locus_tag="VF308_00145"
     CDS             881..1360
                     /gene="tatB"
                     /locus_tag="VF308_00145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HEX7435091.1"
                     /translation="MIDFGFDKLALIGAVALVVIGPEKLPRVARTVGTLLGKAQRYVA
                     DVKAEVSRSIELEELKKMKTEFEDAARNVEQTVSSEVHQTTSELANAWQPPADTVAPL
                     GSDSPLATPASYRHPKKNWRLKRGAMPQWYKQKNGIRGRAQSGAARVARFRPPRTTA"
     gene            1361..2149
                     /gene="tatC"
                     /locus_tag="VF308_00150"
     CDS             1361..2149
                     /gene="tatC"
                     /locus_tag="VF308_00150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012655732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEX7435092.1"
                     /translation="MSGGVDKDPDELAGTEQPFVSHLVELRDRLIRASIAVLVCAAVL
                     FFYPGPGKLYDLLAAPLVAHLPAGGTLIATNVISPFLVPMKITLMAAFLLALPVVLYQ
                     AWAFVAPGLYSHEKKLVLPLVVSSTLLFFAGVAFCYFFVFGKVFTFIQGFAPKSVAAM
                     PDIEAYLGFVLTMFIAFGAAFEVPIVVVVLARIGMVSIERLKAFRSYFVVLAFIIAAI
                     LTPPDVVSQLALAIPMCLLYEIGIWAAQIFIRHTQAPAEEKTAP"
     gene            complement(2168..>3204)
                     /locus_tag="VF308_00155"
     CDS             complement(2168..>3204)
                     /locus_tag="VF308_00155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX7435093.1"
                     /translation="PVRSVSLIGTGTAMTSYASAAKRASPAVVSITASRVAARPRNED
                     PMFRFFFGDRARQAPEERQVGLGSGVIVSPAGYLLTNNHVIDGADDVEVMLGDGRTAH
                     AKTIGTDPESDIAVLKIDLDKLPVIDFGDVDHLQVGDVVLAIGNPFGVGQTVTSGIVS
                     ALGRNSLGINIFENFIQTDAAINPGNSGGALVDVAGNLLGINTAIYSRSGGSLGIGFA
                     IPVSTARQVMESLIKEGRVTRGWIGVEPRDLTPEIAKTLDLSVKQGVLITGVVQNGPA
                     SEGGLQPGDVVLRIAGAPVSNTPQLLNAVAALKPRETATVSVQRGANALDLKVTVGQR
                     PPLRPTNLER"
BASE COUNT          469 a         1100 c         1083 g          552 t
ORIGIN      
        1 gcgcgacgac gcacgcggca cgtggcagga atcgcatttc agctggcgca tccgcagcgt
       61 gctctgggcc ggcgggctct acctggtcac cgcgccgctc tggctgctgc tcctgatccc
      121 gggctggatc gcgtggggga tcatctcgct ctggttcctc taccgcatcg cccgcggctg
      181 gctgaacctg tcgtcgaaca cgccgatgcc gatgcccgcc tgaggacgcg acgatgaagc
      241 gagacccggg ctgcatcttc tgccgcatcg tcgccggcga gatcccgagc cgaaaggcct
      301 acgaagacga cgagatcctg gtcttccacg acatcgagcc gtgggcgccg gtgcacgtgc
      361 tcgtgatccc gaaggagcac attgccacct tctacgacgt gagcgaggcg cacaccgcgc
      421 tgctcggccg gatgctcgcg ctcgcgccgc ggctgatgcg cgagctcggc gtgacgaacg
      481 gctttcgcac cctcgtcaac accggtgtcg acgggaggca ggaagtgcag cacctccacg
      541 ttcatgtcat gggcggcccg cgtccgtggg cgaagggctg acctagaatc ttcgccaatt
      601 cctcaccgga gaaccaccat gggttcattc agcgtctggc actggctgat cgtgcttctg
      661 atcgtcgtgc tgatcttcgg caccaagaag ctgaagaaca tcggcagcga tctcggcggg
      721 gcggtcaagg gcttcaagga cggcgttcgc gacggcaccg cgtcgccggc cgatccggcg
      781 gcgccgaccc agcgcgtcgg cgccgagcgc acgctcgacc cgggcaccgt cgacgtcgag
      841 accaagacga cgcgcaactg acgctctcgc ggcccgcgcc atgatcgatt tcggcttcga
      901 caagctggcc ctgatcggcg cggtcgcgct ggtcgtgatc ggcccggaga agctgccgcg
      961 cgtcgcccgc accgtcggca cgctgctcgg caaggcgcag cgctacgtcg ccgacgtgaa
     1021 ggccgaggtc agtcgctcga tcgagcttga agagctgaag aagatgaaga ccgagttcga
     1081 agacgccgcg cgcaacgtcg agcagacggt ctcgagcgaa gtccaccaga ccacctccga
     1141 gctcgccaac gcctggcagc cgcccgccga cacggtcgct ccgctcggca gtgacagccc
     1201 cttggccacg ccggcttcgt accggcatcc gaagaagaac tggcgcctga agcgcggtgc
     1261 gatgccgcag tggtacaagc agaagaacgg catccgcggc cgggcgcagt cgggtgcggc
     1321 gagagtcgcg cgctttcgtc ctccccgcac gaccgcctag atgagcggcg gtgtcgacaa
     1381 ggatcccgac gagctggcgg ggaccgagca gccgttcgtc tcgcatctcg tcgagcttcg
     1441 cgaccggctg atccgggcgt cgatcgcggt cctggtctgc gcggcggtgc tgttcttcta
     1501 tccgggaccc gggaagctgt acgacctgct tgccgcgccc ctcgtcgccc acctgccggc
     1561 gggcggcacc ctgatcgcca ccaacgtcat ctcgccattc ctggtgccga tgaagatcac
     1621 gctgatggcg gcgttcctgc tcgcgctgcc ggtcgtcctc taccaggcct gggccttcgt
     1681 cgcgccgggc ctgtattcgc acgagaagaa gctcgtcctg ccgctcgtcg tctcgagcac
     1741 gcttctcttc ttcgccggcg tcgccttctg ctacttcttc gtcttcggca aggtgttcac
     1801 cttcatccag ggattcgcgc cgaagagcgt cgcggcgatg cccgacatcg aggcctacct
     1861 cggcttcgtg ctgacgatgt tcatcgcctt cggcgcggcc ttcgaggtgc cgatcgtcgt
     1921 cgtcgtgctg gcgcggatcg ggatggtcag catcgagcgg ctgaaggcgt ttcgctccta
     1981 ctttgttgtt ctcgccttca tcatcgctgc catcctgacg ccgcccgacg tcgtctcgca
     2041 gctggcgctg gcgattccga tgtgccttct ctacgagatc ggcatctggg cggcacagat
     2101 cttcatccgc cacacgcagg cgccggccga ggagaagacg gcgccctgag gcgcggcccc
     2161 gcccggatca gcgctcgaga ttcgtcggcc gcaacggcgg ccgctggccg acggtgacct
     2221 tgaggtcgag cgcgttcgcg ccgcgctgca cgctgacggt cgcggtctcg cgcggcttca
     2281 gcgcggcgac ggcgttgaga agctgcggcg tgttgctgac cggcgcgccg gcgatcctga
     2341 ggacgacgtc gcccggctgc aggccgcctt cgctcgccgg gccgttctgc acgacgccgg
     2401 tgatgaggac cccctgcttg accgagaggt cgagcgtctt ggcgatctcg ggcgtcaggt
     2461 cgcgcggctc gacgccgatc cagccgcgcg tgacccggcc ttccttgatc aggctttcca
     2521 tcacctggcg cgcggtgctc acgggaatcg cgaagccgat gccgaggctg ccgccgctgc
     2581 gcgagtaaat cgcggtgttg atgccgagca ggttgccggc gacgtcgacc agcgcgccac
     2641 ccgagttgcc cgggttgatc gccgcatcgg tctggatgaa gttctcgaag atgttgatgc
     2701 cgagcgagtt gcggccgagc gcgctgacga ttcccgaggt gacggtctgg ccgacgccga
     2761 acgggttgcc gatcgccagc acgacgtcgc cgacctggag gtggtcgacg tcgccgaaat
     2821 cgatcaccgg cagcttgtcg aggtcgatct tcagcaccgc gatgtcggac tcggggtcgg
     2881 tgccgatcgt cttcgcgtgc gcggtgcggc cgtcgccgag catcacctcg acgtcgtcgg
     2941 cgccgtcgat gacgtggttg ttggtgagca ggtagcccgc cggcgagacg atcacgcccg
     3001 agcccaggcc gacctggcgc tcttccggcg cctgccgggc gcggtcgccg aagaagaagc
     3061 ggaacatcgg gtcctcgttg cgcggccgcg ccgcgaccct gctggcggtg atgctgacga
     3121 ccgccggcga ggcgcgcttg gcggcgctcg catagctcgt catcgccgtt ccggtgccga
     3181 tgagggagac gctgcgcacc ggcg
//
LOCUS       DASVHM010000009         2144 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_938134, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000009 DASVHM010000000
VERSION     DASVHM010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_938134"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..556
                     /locus_tag="VF308_00160"
     CDS             <1..556
                     /locus_tag="VF308_00160"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEX7435094.1"
                     /translation="ATSYDLKTAPRGTDGCSIPTFGIPLHNLGLAFARVGTGNGLRAG
                     HARAARRLRQAAAKFPFMLAGTGRFDTRVMQRLGERVFCKVGAEGVYCAALPERGLGV
                     AIKIDDGNNARAAEVVMAAAIEALVSLSDEEAVFMRGFSDRPLSNWNGIEIGALRATR
                     SLRHALAPLARPLPVNRDATPRSD"
     gene            492..1532
                     /locus_tag="VF308_00165"
     CDS             492..1532
                     /locus_tag="VF308_00165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435095.1"
                     /translation="MRWRRSRARCRSTATQRRARIDAVPRRVQSDTDPLCFTDTRRKE
                     GTGMGDVHGFDFDFGNTTRGELLKQAAKTVSSLGGHLGEGDARPAPTPNEAAAARLFR
                     ELNTEVAEFGAFPEVVPIRAEDFAAVGLKTPDRFAELAKAHRFFWVRIPLTLKPLDNL
                     PFTRLQCGVEFNPGDDPGHLRPIAQMILPDRKFQQLLEGHTSLTLGIGENFEFEARGG
                     GEAAGAKVDAGVDVKTAAAAGLTVGPFNYTLKKAKINHSGTGSGKIFWSLDGAEFFEE
                     QEPVLVVVLRVPNELDHVSVAAALQASHEFKPLATDVGAFLGLIGERIANFFRKGAPA
                     ADTKVWDLTPRL"
     gene            1561..>2144
                     /locus_tag="VF308_00170"
     CDS             1561..>2144
                     /locus_tag="VF308_00170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435096.1"
                     /translation="MLELTVTVVDLQKVEARTSLGVERSGRVEHDPLRANTIRILDNW
                     LRKSPIVSRDELEVLGEHLFDTLFQGDVRELLSQCLNEADQGTPLRLQLSFKHEAQAL
                     ASYPWEYLYRRDGERGHFLSTHARLVLSRFMPPDKKRQTLAAKDPDLRILLAVAEPED
                     AALGPVVAGPVTEAVERVADELTAGKMSIGDGSAR"
BASE COUNT          362 a          739 c          723 g          320 t
ORIGIN      
        1 ggcgacgagc tacgacctga agaccgcgcc gcgcggcacc gacggctgct cgattccgac
       61 cttcggcatt ccgctgcaca acctcgggct cgcattcgcc cgcgtcggca ccggcaacgg
      121 gctgcgggcc ggtcatgcac gcgcggcgcg gcgcctgcgc caggcggccg cgaagttccc
      181 tttcatgctc gccggcaccg ggcgcttcga cacgcgcgtg atgcagcgcc tcggcgagcg
      241 cgtgttctgc aaggtcggcg ccgaaggcgt gtactgcgcg gcgctgcccg agcgcgggct
      301 cggcgtcgcg atcaagatcg acgacggcaa caacgcgcgc gccgccgagg tcgtgatggc
      361 cgcggcgatc gaggcgctgg tctcgctgag cgacgaggaa gccgtcttca tgcgcggctt
      421 cagcgaccgg cctctgtcga actggaacgg catcgagatc ggcgcgctgc gcgcgacgcg
      481 gtcgctgcgc catgcgctgg cgccgctcgc gcgcccgctg ccggtcaacc gcgacgcaac
      541 gccgcgctcg gattgacgca gtgccgcgcc gggtgcaatc ggataccgat cccttatgct
      601 ttactgacac gcggcgcaaa gaggggaccg gcatgggcga cgtacacgga ttcgacttcg
      661 acttcgggaa cacgacccgc ggcgagctgt tgaaacaggc ggccaagacc gtcagttccc
      721 tgggcggcca cctgggcgag ggcgatgccc gacccgcgcc caccccgaac gaagccgccg
      781 ccgcccgcct gttccgcgag ctcaataccg aggtggccga gttcggcgcc tttccggagg
      841 tcgtgccgat cagggccgag gacttcgccg ctgtcggcct gaagaccccc gaccgcttcg
      901 ccgagctggc gaaggcgcat cggttcttct gggtccggat ccccctgacc ttaaagccgc
      961 tggacaacct gccgttcacg cgcctgcaat gcggcgtcga attcaacccg ggcgacgacc
     1021 ccgggcatct gcggccgatc gcgcagatga tcctgccgga tcgaaagttc cagcagcttc
     1081 tcgagggtca caccagcctg acgctcggca tcggcgagaa cttcgagttc gaagcgcgcg
     1141 gcggcggcga ggccgccggg gccaaggtcg atgccggcgt cgacgtcaag accgcagcgg
     1201 ccgccggcct cacggtgggc cccttcaact acaccctcaa gaaggcgaag atcaaccaca
     1261 gcggcacggg ctccggaaag atcttctggt cactcgacgg cgccgagttc ttcgaagagc
     1321 aggagccggt gctggtcgtc gtcctgcgcg tcccgaacga gctcgatcat gtcagcgtcg
     1381 ccgctgcctt gcaggcctcg cacgagttca agccgctggc cacggatgtc ggtgcgttcc
     1441 tcggcctcat cggcgagcgc atcgccaact tcttccgcaa gggcgcgccg gcggcggaca
     1501 cgaaggtgtg ggatctgacc ccgcgcctct gagggcacga cgagcgaagc ggcgccaggc
     1561 atgcttgaac tgaccgtcac ggtcgtggac ctgcaaaagg tcgaggcccg gacatcgctg
     1621 ggcgtcgaga gaagtggccg cgtcgaacac gacccgctgc gggccaacac gatcagaatc
     1681 ctcgacaact ggctgcgcaa gagtccgatc gtgtcgcgcg atgaactcga agtgttgggc
     1741 gaacacctgt tcgacacgct gttccaaggc gacgtgcgcg aactcttgtc acagtgcttg
     1801 aacgaagccg atcagggcac gccgctgcgc ctgcagcttt ccttcaaaca cgaggcgcag
     1861 gcgctggcaa gttatccgtg ggagtacctg taccggcgtg acggcgagag gggacacttc
     1921 ctgtcgaccc acgcgcggct ggtgttgtcg cgcttcatgc cgcccgacaa gaaacgccag
     1981 accctggccg ccaaggatcc cgacctgcgg attctcctcg cggttgccga gcccgaagac
     2041 gcggcactgg gtccggtcgt cgcggggccc gtcaccgagg cggtcgaacg agtcgccgac
     2101 gaattgaccg ccggcaagat gtcgatcggg gacggcagcg cccg
//
LOCUS       DASVHM010000010         5386 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_145075, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000010 DASVHM010000000
VERSION     DASVHM010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5386
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145075"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            286..885
                     /locus_tag="VF308_00175"
     CDS             286..885
                     /locus_tag="VF308_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX7435097.1"
                     /translation="MSRPLIALDADGVLLDFHLGYAGAWERAFGSAPLERDPCAYWPM
                     DRWHVTRLDAEERALFRRHFDEHFWSTVPAIGGAVEACHRLHAAGFDLVCVSALDFEY
                     EAARLRNLRDHGFPIERVIATGNAEGERSPKADAIEALRPLAFVDDYLPYLRGLPDDV
                     HTALVLRAPNGSPNSGVDMRLVKSVHQDLADFAEHWLTR"
     gene            complement(914..2335)
                     /locus_tag="VF308_00180"
     CDS             complement(914..2335)
                     /locus_tag="VF308_00180"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HEX7435098.1"
                     /translation="MIRPAALPEPETRVLAGACDDARRAVIALPLALAGASLAQPAAA
                     QPAGADTASPTRLALLIGNRAYPDPFELPPTHKNVRDLTAALEKRNFKVTAALDQNPD
                     ALRSTIQAFAKIAGESPPNATILFYFTGHGMQVDAENLMLGSGISPDSREDTLLKSSL
                     HLRRDVIDQLPRRPSGLSIAVVDACRTSLRAALTATDGFNQVEAPLGCLIVFSTGAGK
                     PAIAPAVETINTFYTASLVKLLQTAADELSFSDFFRLVKLDVQQTMQNYPVQAIREFT
                     QFPFIAENTQIRFVLSPRSPAQTSPPVTSANAAEEAAAWRELQENMWPADVVRLSEAY
                     LKAYPESRLAGGAQVAREGAAEAVRVLRSNEVRLYRSAFQPRTTQPEWLAELRKAARG
                     DKDAAARIARAYLRGEGDIAPDPNRYEGWLQFAAALGNGIACYELAVYYRKQAQPEPA
                     AQYESRAKELGYTPPPTLDNVRK"
     gene            complement(2332..>5386)
                     /locus_tag="VF308_00185"
     CDS             complement(2332..>5386)
                     /locus_tag="VF308_00185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435099.1"
                     /translation="AIGGPAALGNLGASGPAQLNAGTNTTGAQTFGGALTVGANATLS
                     GASLAIGGALDIGANTVNVLADAVSAGGAATGAAGGTLRMAPRLATGTMGVAGGPGTL
                     QVSQALIITLAGVPTLKLGRTDGSGDINAANLSLPANLAIESGTGNVAFNGTVDSAAG
                     PTRNLSVNTAGTTTVGAAVGASSAVGQLSIAGASQLNGASIVSAGAQAYGGAVTIGSD
                     TTLTGPSVGFASTVDGPHALTVNAAATNFGAAVGAGSALTSLTTDAAGTTQLNGNVTT
                     TGAQAYNDALLLNSNATLSGNTLKLGGTVDGARALALNGVGGVTLSQAIGTNAALAGL
                     TVSGPLQLDAGAVTTSGTQSYANNVTLGRNTALAGSAINFGGALNGPFDLTLQSAGTS
                     TFGAAIGATAPLASLTAAGGGTVALQGASIDTVGAQSYSGPLQLGGNTRLTGAALTFG
                     GAVSGAQDLQLQTNALTVAAGLSGSGILTIASLDPTLSIGLAGGAGSLQVPQALLDGA
                     AGFAQQVIGRVDGSGALTAGPLLLRSNTTLQSNTGDVRLNGSVDGGFDLTLASGAVTR
                     IAGPVGVTTPLRSLTTDNNAAAADWNGTSGERTVFDLADASGRARVITSGAQTYADPV
                     LASVPIFFGGAAITANQAPNKFDLGVAATADTLQLRSASDVKLDDVTLANGGRIETDG
                     LLQLAGALNLNGGTLVLVSNAVPTAIDFTDPELQGRTLSFGFAPLKEASATIFQSNGS
                     TLSSAASSLLVLRSPQGGSLQLDQPGNTLLGTISAVSGTLGDTSQARFNAANITLSFV
                     RLDSSEIHVAGAPPTDANQTAQQAGIEGDVLKLTADVVSTGPTGQLRAHLPFNNVQGS
                     QTSLPGITFVLSPKALTGGGAFGTAAPDGWIQVQIGADDGGFLTVRPKGAGAKDVFVL
                     LGGRIDAKPFYDGAGKLTEVRVFYNGDSPRTPQETGALAAVTAVIEDARHARFDEAVR
                     TENVSSRLRSGVIAEVGAGRPATVGRESIRPPDICDVKPGTLRCE"
BASE COUNT          783 a         1775 c         1907 g          921 t
ORIGIN      
        1 tcttgttcca cgcgtttgac gatcactcga tcgtgcaacg gacgaagttt catagaatct
       61 cctttggtgt gagctgtgtc cgacagtcgg actgaagtgg gtgcttaccc gcttctgacc
      121 cgaaaccacc ggaatcgggg ctccgagtcg tttagcactc gactggctag agtgctagca
      181 agtcggatta tagggtgcat ctccagcgat tcaacccctg acgcaaacgc atccgcaagt
      241 cccctccgcg caatcgcttt agccctctcc cgatacagtc accagatgtc tcgtccgctc
      301 atcgccctcg acgccgacgg ggtcctgctc gactttcacc tcggctatgc cggcgcctgg
      361 gagcgcgcct tcggcagtgc accgctcgag cgagacccct gcgcgtattg gccgatggat
      421 cgttggcatg taacccgcct cgacgccgag gagcgcgccc ttttccggcg tcacttcgac
      481 gagcacttct ggtcgacggt gccggccatc ggcggcgcgg tcgaggcttg ccaccggctg
      541 catgcggccg gcttcgacct cgtctgcgta tcggcgctcg acttcgagta cgaagcggcg
      601 cgcctgcgca atctgcgcga tcacggcttt ccgatcgagc gcgtgatcgc gaccggcaac
      661 gccgaaggcg agcgcagccc gaaggccgac gcgatcgagg cgctgcggcc gctcgctttc
      721 gtcgacgact acctgccgta tctgcgcggc ctgccggacg acgtgcacac ggcgctcgtc
      781 ctgcgtgcac cgaacggcag tccgaattcg ggcgtggaca tgcgtcttgt caagtccgtg
      841 caccaggacc tggccgattt tgccgagcac tggctgacac gctgatcggc gcggtgcgcg
      901 gatcagcgcg aagctacttg cgcacattgt cgagggtcgg cggcggcgtg tagccgagtt
      961 ccttggcgcg cgattcgtat tgcgcggcgg gctccggctg cgcctgcttg cggtagtaca
     1021 ccgcgagctc gtagcaagcg atgccgttgc cgagcgctgc agcgaattgg agccagcctt
     1081 cgtaccgatt cggatcggga gcgatgtcgc cctcgccgcg caggtaggcg cgtgcgatcc
     1141 gggccgcggc atccttgtca ccccgcgcgg ccttgcgcaa ctcggccagc cattcgggtt
     1201 gggtggttct aggctggaac gcgctgcggt agaggcgcac ttcgttgctg cgcaagaccc
     1261 gcaccgcttc ggcagcgcct tcgcgcgcga cctgggctcc gccggcgagc cggctttcgg
     1321 ggtacgcctt caggtaagcc tccgacagcc ggaccacatc ggcgggccac atattctcct
     1381 gcagctcgcg ccaggccgcc gcttcttcgg ccgcgttcgc tgaagtgacg ggcggggaag
     1441 tctgagcggg gctccttggc gagagaacga agcgaatctg ggtgttctcg gcgatgaacg
     1501 gaaactgcgt gaattcgcgt atcgcctgaa ccgggtagtt ctgcatggtc tgctgcacat
     1561 cgagcttgac gagccggaag aagtccgaga acgacaactc gtcggccgcg gtctgcagca
     1621 gcttcacaag cgacgcggtg tagaacgtgt tgatcgtttc gacggccgga gcgatcgccg
     1681 gcttgccggc gccggtcgag aagacgatga ggcagccgag cggcgcctcg acctggttga
     1741 agccgtcggt ggccgtcaac gccgcccgca acgacgtgcg gcaggcgtcg acgacagcga
     1801 tggaaagtcc gcttggccgg cgcggcaact gatcgatgac atcgcgccgc aggtgcaggc
     1861 tgctcttgag cagcgtgtct tcgcgcgaat ccggcgatat gcccgagccg agcatcaggt
     1921 tctccgcgtc gacctgcatg ccgtggccgg tgaaatagaa aagaatcgtc gcattgggcg
     1981 gtgactcacc cgcgatcttc gcgaacgcct ggatcgtgct gcgcagcgca tcggggttct
     2041 ggtcgagcgc ggcggtgacc ttgaagttgc gcttttcgag ggcagccgtg aggtcgcgaa
     2101 cgttcttgtg ggtcggcggc agctcgaacg gatccgggta ggcgcgattg ccgatcagca
     2161 gcgcgagccg cgtcgggctg gccgtgtcgg cgcccgccgg ctgcgccgcc gcaggttggg
     2221 ccaagctcgc gcccgcgagc gcgagcggca gcgcgatgac ggcgcggcgc gcatcgtcgc
     2281 aagcgccggc caggacgcgg gtctccggct cgggcaaggc agccggccga atcattcgca
     2341 ccgcagcgtt cccggtttga catcgcagat gtcaggcggg cggatcgact cgcgtccgac
     2401 cgtcgccgga cgccccgcac cgacctcggc gatgacgccc gagcgcaggc gcgacgacac
     2461 gttctcagtg cgcaccgctt cgtcgaagcg ggcgtggcgt gcgtcctcga tcacggcggt
     2521 gacggcggcg agcgcaccgg tctcttgcgg cgtgcgcggt gaatcgccgt tgtagaacac
     2581 gcgcacctcg gtcagcttgc ctgccccgtc gtaaaacggc ttggcgtcga tcctgccgcc
     2641 gagcaggacg aagacatcct tggctcctgc tcccttcggg cgcacggtga ggaagccgcc
     2701 atcatcggcg ccgatctgaa cctggatcca gccatccggc gcggcggtac cgaaggctcc
     2761 gccacccgtg agcgccttcg ggctgagcac gaacgtgatg ccgggcaagg aggtctgaga
     2821 accctgcacg ttgttgaacg gcaggtgcgc gcgcagttgg ccggtcggcc cggtgctgac
     2881 gacatcggcg gtgagcttga gcacgtcgcc ctcgatgccg gcctgttgcg ccgtctggtt
     2941 ggcatcggtg ggcggggcac cggcgacgtg gatctcgctc gaatcgagcc gcacgaagct
     3001 gagcgtgatg ttggccgcat tgaagcgcgc ctggctcgtg tcgccgagcg ttccgctcac
     3061 cgccgaaatc gtgccgagca gcgtgttgcc gggctggtcg agttgcaggc tgccgccctg
     3121 cggcgagcgc aggaccaaca ggctcgaggc cgcagagctg agggtcgacc cgttgctctg
     3181 gaagatggtc gcgctcgctt ctttcaaagg cgcgaagccg aagctcagcg tgcggccctg
     3241 tagttcgggg tcggtgaaat cgattgcggt cgggaccgcg ttcgacacca ggaccagggt
     3301 gccaccattg aggttcagcg caccggcgag ttggagcagg ccgtcggttt cgatgcggcc
     3361 gccgttggca agcgtcacgt cgtcgagctt cacgtcgctg gcgctgcgca gctgcagggt
     3421 gtcggcggtc gcggcaacgc cgaggtcgaa cttgttcggc gcttggttcg ccgtgatcgc
     3481 ggcgccgccg aagaagatcg gcacgcttgc gagcactgga tcggcatagg tctgggcgcc
     3541 gctcgtgatg acgcgcgcgc ggcccgacgc atcggccagg tcgaacaccg tgcgctcgcc
     3601 gctggttccg ttccagtcgg cggccgcggc attgttgtcg gtcgtgaggc tgcgcagcgg
     3661 cgtcgtcacg ccgaccgggc cggcaatgcg ggtgacagcg ccgctggcga gcgtcaggtc
     3721 gaacccgccg tcgacgctgc cgttgaggcg gacgtcgccg gtgttgctct gcaaggtagt
     3781 gttcgaacgc agcagcaagg gcccggcggt caatgcgccg ctgccgtcga ctcgcccgat
     3841 cacctgctgc gcgaacccgg cggcgccgtc gagcagggcc tgcggcacct gcagcgagcc
     3901 ggcacctccg gcgaggccga tcgagagtgt gggatcgagc gacgcaatgg tcaggatgcc
     3961 ggacccgctg agacccgcgg ccaccgtgag cgcgttggtc tggagttgca ggtcctgtgc
     4021 cccgctgacc gcgccgccga atgtcagcgc ggcaccggtc aggcgggtgt ttccgccgag
     4081 ctggagcggg ccgctgtagc tctgagcgcc gaccgtgtcg atgctcgctc cctgcagtgc
     4141 gaccgtgccc ccgccggcag cggtcaggct cgcgagcggc gcggtcgcgc cgatcgccgc
     4201 gccgaaggtc gaggtgccgg cgctctgcag cgtcaggtcg aagggtccgt tcaaagcacc
     4261 gccgaagttg atcgccgagc cggcgagcgc tgtattgcgg ccgagcgtga cgttgttcgc
     4321 gtagctctgt gtgccgctcg tcgtcaccgc gccggcatcg agctggagcg gaccgctgac
     4381 cgtcaggccg gcgagcgccg cgttggtgcc gatggcctgg ctcagcgtga cgccgccgac
     4441 tccattcagg gcgagcgcgc gggcgccgtc gaccgtgccg ccgagcttga gggtgttgcc
     4501 cgaaagcgtc gcgttcgagt tcaatagcag cgcgtcgttg taggcttgcg cgccggtcgt
     4561 ggtgacgttg ccgttcaact gcgtggtccc ggcggcatcg gtggtgaggc tcgtcagcgc
     4621 cgagccggcc ccaacggccg cgccgaaatt cgtcgccgcc gcattgacgg tcagtgcatg
     4681 cggcccatcg acggtgctgg cgaacccgac cgacggcccc gtcagcgtcg tgtcggaccc
     4741 gatcgtgacg gcacccccat aggcctgcgc tccggccgac acgatgcttg cgccgttcaa
     4801 ttggctggcg cctgcgatcg acaattggcc gactgcgctc gaagcgccga cggcggcccc
     4861 gacggtcgtg gttccggccg tgttgacgct cagattgcgg gtcggacccg cagcgctgtc
     4921 gaccgttccg ttgaaggcga cgttgccggt gccgctctcg atcgccagat tggcgggcag
     4981 gctcaagttg gcggcattga tgtcgccgga gccatcggtg cggccgagct tgagggttgg
     5041 aacaccggcc agagtaatga tcagcgcctg cgaaacctgc agcgttccgg ggcccccggc
     5101 aacgcccatg gtgcccgtcg cgaggcgcgg cgccatgcgc agcgtgccac cggccgctcc
     5161 ggtggccgcc ccgccggcgc tcaccgcgtc ggcgagcacg ttgaccgtgt tggcaccgat
     5221 gtcgagtgcg ccgccgatcg cgaggctggc gccggacagg gtggcgttcg ccccgaccgt
     5281 gagcgcaccg ccgaacgtct gggcgccggt cgtgttcgtg ccggcgttaa gctgtgccgg
     5341 accgctggcg ccgagattgc cgagtgcggc cgggccgccg atcgcg
//
LOCUS       DASVHM010000011         2163 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_72903, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000011 DASVHM010000000
VERSION     DASVHM010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72903"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VF308_00190"
     CDS             complement(<1..331)
                     /locus_tag="VF308_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009769994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435100.1"
                     /translation="MFSKPVDIAGAAGFVALMAVLPLVFPSNYLIGVLTVSVMYGIWA
                     VTWDFMSGLTGRENFGHALFIGVGAYTAGFMNTTFGFNGWWSLPASMLMAVLFALLIG
                     LPTLRLKG"
     gene            complement(347..1201)
                     /locus_tag="VF308_00195"
     CDS             complement(347..1201)
                     /locus_tag="VF308_00195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009769993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435101.1"
                     /translation="MLEILIVGAVSSAIYAMLAVGFTLIFGVARVLNLAHGSFYALGA
                     YGAYVLTSQLKLPLLPAALLSVALVAVFGIVIERVFIRPMRKSQLGVLMITLAVALVV
                     EQALFLTFGSEYRNVPAFIDSKFTIGGVNIAGARLLALGVGIAVIGALWLFIQHTRYG
                     SAILAISQDPEAAQYMGIPSDRIFSVVMGISAALAALAGVLAGPFLTVQPTMWLLPIV
                     KAFAIVVVGGLGSIPGSILAALMLGYAETIVGYTVSTSWTEIVSVLATLLMLMFRPAG
                     IFGRRAAF"
     gene            complement(1207..>2163)
                     /locus_tag="VF308_00200"
     CDS             complement(1207..>2163)
                     /locus_tag="VF308_00200"
                     /inference="COORDINATES: protein motif:HMM:NF013275.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435102.1"
                     /translation="ADEKVDVLIGGYTSGVTLAQLPHISAAKTIYLNVGSASPATNAK
                     VKTDYDNYKYIFRVGPLNAALQARQMTGFISTFVKGELGLSKIAIVGENAKWVQDLVP
                     LLKKGATEAGADVRTVEFFDAQTSDFSPLFSKVKDSGAQYMVVILSHASSDIFAKQWH
                     DSRFPMAYGGIDVKSMDGDFCDRIGGKAVGELAANFAVRAPLTPKTVPFFDEFRKRTN
                     RSPVYTAFGANDAVYIYAEAVKRANSTNAEAVIKELEKTSYVGIPGTIEFDDTHDVKP
                     GSATYKGPALLFAQWRDGCKREVIVPKSMRTADFVYPSWIKP"
BASE COUNT          385 a          690 c          759 g          329 t
ORIGIN      
        1 ggcccttcag gcgcagcgtc ggcaggccga tcaggagcgc gaagaggacg gccatcagca
       61 tcgacgcggg caggctccac cagccgttga agccgaacgt cgtgttcatg aagccggcgg
      121 tgtaggcgcc gacgccgatg aagagcgcgt ggccgaagtt ctcgcggccg gtgaggccgg
      181 acatgaagtc ccacgtgacc gcccagatgc cgtacatgac gctgacggtg agaacgccga
      241 tcaggtagtt gctcgggaag acgagcggca gcaccgccat gagcgcgacg aacccggccg
      301 cgccggcgat gtcgacgggt ttgctgaaca tgggcggcct agggccctag aaggcggcgc
      361 gccggccgaa gatgccggcc ggccggaaca tcagcatcag aagcgtcgcg agcaccgaga
      421 cgatctcggt ccacgaggtc gagaccgtgt agccgacgat cgtctcggcg tagccgagca
      481 tcagcgccgc caggatgctg cccgggatcg agccgaggcc gccgacgacg acgatcgcga
      541 acgccttgac gatcggcagc agccacatcg tcggctgcac ggtgaggaac ggcccagcga
      601 ggactcccgc caacgccgcc agcgccgccg agatccccat cacgaccgag aagatgcggt
      661 cgctcgggat tcccatgtac tgcgccgcct ccgggtcctg cgagatggcg aggatcgccg
      721 agccgtagcg cgtgtgctgg atgaagagcc agagggcgcc gatgacggcg atgccgacgc
      781 cgagcgcgag caggcgcgcg ccggcgatgt tgacgccgcc gatcgtgaac ttgctgtcga
      841 tgaacgccgg cacgttgcgg tactcggagc cgaaggtgag gaagagcgcc tgctcgacga
      901 cgagcgcgac ggcgagcgtg atcatcagca ccccgagctg cgacttgcgc atcggccgga
      961 tgaagacgcg ctcgatgacg atgccgaaca ccgccaccag agccaccgag agcagcgccg
     1021 ccggcagcag cggcagcttc agctgcgagg tgagcacgta ggcgccgtac gcccccagcg
     1081 cgtagaacga gccgtgggcg agattgagca cccgcgcgac gccgaagatc agcgtgaagc
     1141 cgacggcgag catcgcgtag atggcgctgc tcaccgcgcc gacgatcagg atctcgagca
     1201 aggcgcttaa ggcttgatcc agctcgggta gacgaaatcg gcggttcgca tgctcttcgg
     1261 cacgatcacc tcgcgcttgc agccgtcgcg ccactgcgcg aacagcagcg ccgggccctt
     1321 gtacgtcgcg ctgccgggct tgacgtcgtg ggtgtcgtcg aactcgatcg tgccggggat
     1381 gccgacgtag ctcgtcttct cgagctcctt gatcaccgcc tcggcgttcg tgctgttggc
     1441 gcgcttgacg gcctcggcgt agatgtagac ggcgtcgttg gcaccgaacg cggtgtagac
     1501 cggcgagcgg ttggtgcgct ttctgaactc gtcgaagaac ggcaccgtct tcggcgtcag
     1561 gggcgcgcgc accgcgaagt tggcggccag ctcgccgacc gccttgccgc cgatgcgatc
     1621 gcagaagtcg ccgtccatgc tcttgacgtc gatgccgccg taggccatcg ggaagcgcga
     1681 gtcgtgccac tgcttggcga agatgtcgct cgacgcgtgc gagaggatga cgaccatgta
     1741 ctgcgcgccc gagtccttga ccttcgagaa gagcggcgag aagtcggagg tctgcgcatc
     1801 gaagaactcg accgtgcgaa cgtcggcgcc ggcctctgtg gcgcccttct tcaacagcgg
     1861 cacgagatcc tgcacccact tcgcgttctc gccgacgatc gcgatcttgg agaggccgag
     1921 ctcgcccttt acgaaggtcg agatgaagcc ggtcatctgg cgcgcctgca gcgcggcgtt
     1981 gagcgggccg acgcggaaga tgtacttgta gttgtcgtag tcggtcttga ccttggcgtt
     2041 ggtcgccggc gaggccgagc cgacgttgag gtagatcgtc ttggcggccg agatgtgcgg
     2101 cagctgcgcc agcgtgacgc cgctcgtgta gccgccgatc agcacgtcga ccttctcgtc
     2161 ggc
//
LOCUS       DASVHM010000012         1666 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_577842, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000012 DASVHM010000000
VERSION     DASVHM010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_577842"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(38..343)
                     /locus_tag="VF308_00205"
     CDS             complement(38..343)
                     /locus_tag="VF308_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018313071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1330 domain-containing protein"
                     /protein_id="HEX7435103.1"
                     /translation="MAKGYWIARVDVADAEAYKAYVAANAAPLGRFGARFVVRAGRFE
                     NPEGSSRSRNVVVEFPSYQAALDCWKSTDYQAAVQLRLPVSTVDMVIVEGYDGPQPG"
     gene            complement(413..724)
                     /locus_tag="VF308_00210"
     CDS             complement(413..724)
                     /locus_tag="VF308_00210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435104.1"
                     /translation="MNLYEMYVANDMKVGFWVKRRTWGDVCARVTFVGELERHGRWYG
                     GATVRADIFHFVSGTLKEANAVLPSPGSPKTWQQIPPPPLHAWSRSAKRLAATALDTS
                     G"
     gene            complement(832..>1666)
                     /gene="purU"
                     /locus_tag="VF308_00215"
     CDS             complement(832..>1666)
                     /gene="purU"
                     /locus_tag="VF308_00215"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEX7435105.1"
                     /translation="RDQVGVVAAVASALADSEAFITESSHYGDPETGLFFMRTVFRAV
                     GTRFTTRADFEIALAPVARRFDMSVGLHVAAQRIKALLVVSRHGHCLNHLLHQWQAGE
                     MPIDVVGVASNHDDMRRLVEWYGIAYHHLPIVGGDKQAQEAQLLDVIGESGAELTVLA
                     RYMQILSDDACRRLEGRCINIHHSFLPSFKGAKPYHQAHARGVKVIGATAHYVSADLD
                     EGPIIEQDTVRVGHSLDADDFVRLGKDVESVVLARAVHWHAEHRVLLNGRRTVVFKPG
                     S"
BASE COUNT          258 a          541 c          601 g          266 t
ORIGIN      
        1 gcgcggccgg gcgcgccgag ccggcgtcgc cgcggcgtca gcccggttgc ggcccgtcgt
       61 agccttcgac gatgaccatg tcgaccgtcg agacgggaag gcgcaactgc accgcggcct
      121 ggtagtcggt cgatttccag cagtcgagcg cggcctggta cgacggaaac tcgacgacga
      181 cgttgcgcga gcggctcgag ccctcggggt tctcgaagcg gccggcgcga acgacgaagc
      241 gggcgccgaa gcggccgagc ggtgccgcgt tggcggcgac gtaggccttg taggcctccg
      301 cgtcggcgac gtcgacgcgc gcgatccagt aacccttggc cattgcttct cttctcccgt
      361 gcggcggaag cggtacggta cacgaggctt tcgcggcgag cacgcgaggg cttcagccgc
      421 tggtgtcgag cgcagtggcg gcgaggcgct tcgccgagcg gctccaggcg tgcaagggcg
      481 gcggcgggat ctgctgccag gttttcggcg agcctggcga gggaagcacc gcgttcgcct
      541 ccttcagcgt tcccgagacg aagtggaaga tgtcggcccg aacggtggca ccgccgtacc
      601 agcggccgtg ccgctcgagc tcgccgacga aggtgacccg cgcgcacacg tcgccccagg
      661 tccggcgctt cacccagaag cccaccttca tgtcgttggc gacgtacatc tcgtagaggt
      721 tcacggcagg cgctggtcgt tcgtcggtcg aacgatcatc cggcgcagcg agccgtgctg
      781 caccccccca cctgggcgtg gcccccacgg gtgaggggtc ggaggcgaag ctcagcttcc
      841 gggcttgaac accaccgtgc gccgcccgtt cagcagaacg cggtgctcgg cgtgccaatg
      901 cacggcgcgg gcgaggacga cgctttcgac gtccttgccg agacgaacga agtcgtcggc
      961 gtcgaggctg tggccgactc gcacggtgtc ctgctcgatg atcgggccct cgtccaggtc
     1021 ggcgctgacg tagtgcgcgg tcgcgccgat gaccttgacg ccacgagcgt gcgcctggtg
     1081 gtagggcttg gcgcccttga agctgggcag gaacgagtga tgaatgttga tgcagcggcc
     1141 ttcgagcctt cggcaggcgt catcggacag gatctgcatg tagcgcgcga gcacggtcag
     1201 ctcggcaccg ctttcgccga tcacgtccag gagctgtgcc tcctgcgcct gcttgtcgcc
     1261 gccgacgatg ggcagatggt gataggcgat tccgtaccac tcgaccagtc ggcgcatgtc
     1321 gtcgtggttc gaggcgactc ccaccacgtc gatcggcatt tcgccggctt gccactggtg
     1381 caggaggtgg ttgaggcaat gaccatggcg cgagacgacc agcaacgcct tgatccgttg
     1441 cgccgcgacg tgcaggccga cgctcatgtc gaagcgtcgc gccaccggcg cgagggcgat
     1501 ctcgaaatcg gcgcgggtcg tgaagcgcgt gccgacggcg cgaaagaccg tgcgcatgaa
     1561 gaagagacct gtctcggggt cgccgtagtg cgatgactcg gtgatgaacg cctcgctgtc
     1621 ggccaacgcc gaagcgacgg cggcgacgac gccgacctga tcgcgg
//
LOCUS       DASVHM010000013         3244 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_866275, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000013 DASVHM010000000
VERSION     DASVHM010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3244
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_866275"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..333
                     /locus_tag="VF308_00220"
     CDS             <1..333
                     /locus_tag="VF308_00220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HEX7435106.1"
                     /translation="LVDAGFADPVLDQETITLRWKSAPALLAELRQLGGNTAPDRHAA
                     LRTPAWRDRLLAALGERADADGSIGLSVEVAYGHGFKPAPRLRADAPVAVSLDEMRAM
                     VRRPRPST"
     gene            445..1002
                     /locus_tag="VF308_00225"
     CDS             445..1002
                     /locus_tag="VF308_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2244 domain-containing protein"
                     /protein_id="HEX7435107.1"
                     /translation="MSALSFQAYRGPAPAASSLRFGSTAGPGDSSVQWLLRRNCSMTP
                     TQLVAFYLSLCAWSLAIAGAFWWRGAMLVLPFAGIELLAVGAALALYARHAGDRERVI
                     LTPGRLSVECTLGRHTDQVEFAPAWVRVEPAHGDRSLIELSGEGKRIAIGRFVRPELR
                     RALADELRAALRRFGAARPRDAGTA"
     gene            1038..2204
                     /gene="coxB"
                     /locus_tag="VF308_00230"
     CDS             1038..2204
                     /gene="coxB"
                     /locus_tag="VF308_00230"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HEX7435108.1"
                     /translation="MTMRASSRLAAGLLASLATTLALAAPAVRDLAGGPAVNQFDLHP
                     PMSQIAADQQWLHNFMLIVCTVIFIAVFGVMFYSIIKHRKSKGARAANFHESTTVEIA
                     WTVVPFIIVILMALPATRVVVAMKDTSAADLTIKATGIQWKWGYDYLNGEGAGIGFLS
                     TLDVAQREMSDRGKPEGDDYLLKVDNPLVVPVDRKVRIITTANDVIHAFYVPSLGVQE
                     TALPGFVRDTWFRATKVGSYYGQCSQLCGKEHSYMPIHVKVVSQLDYTAWVDGKKKEA
                     AAKADDPNKVWELPALAARGEQIYAANCQVCHQPNGKGGGPIKALDGSPTVLDADKTK
                     QIHVLLNGQNNGAMPSWKQLSDTEIAAVVTFTKNHWSNATGQVVQPTEVAAARK"
     gene            2232..>3244
                     /locus_tag="VF308_00235"
     CDS             2232..>3244
                     /locus_tag="VF308_00235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEX7435109.1"
                     /translation="MSAVIGHEGHAHPAGHDHAHDDHEHHGAPHGWRRWVYATNHKDI
                     GTMYLVFAFTMFMVGGVLALAIRAELFQPGLQFMHPQFFNQLTTMHGLIMVFGATMPA
                     FVGFANWLVPLQIGAPDMAFARMNNLSFWLLIPAAIMIVGSFFMPGGAPAAGWTLYAP
                     LTLQMGPSMDAGIFALHILGASSIMGSINIIVTILNMRAPGMTLMKMPLFCWTWLITA
                     YLLIAVMPVLAGAITMTLTDRHFGTSFFNPAGGGDPVMYQHIFWFFGHPEVYIMILPA
                     FGIISAIIPAFSRKRLFGYTSMVYATASIAILSFIVWAHHMFTQGMPVTGQLFFMYAT
                     MLIA"
BASE COUNT          517 a         1163 c         1032 g          532 t
ORIGIN      
        1 ctcgtcgacg ccggcttcgc cgacccggtg ctcgaccagg agacgatcac gctgcgctgg
       61 aagagcgccc cggcgctgct cgccgagctg cgccagctcg gcggcaacac cgcgcccgac
      121 cgtcatgcgg cgctgcgaac gccagcgtgg cgcgatcgcc tgctcgccgc cctgggcgaa
      181 cgcgccgacg ccgacggcag catcggcctc agcgtcgaag tcgcctacgg ccacggcttc
      241 aagccggcgc cgcgcctgcg cgcggacgcg ccggtcgcgg tctcgctcga cgaaatgcgg
      301 gccatggtgc ggcggccgcg tccgtcgacc tgaggcggtg cgctaaaatc tgctgttttg
      361 tcgaggcggt ccggccttcg atgaaactgc ggtcgccgtt ggccgtggca gcggcgctca
      421 gcagaccttt cagacgacag caggatgtca gctctcagct ttcaggctta ccgcgggccc
      481 gctccggcag cgtcgtcgct ccgcttcggc agcaccgccg gcccgggcga cagctcggtg
      541 cagtggctgc tgcgccgcaa ctgctcgatg acgccgaccc agctcgtcgc cttctatctc
      601 tcgctctgcg cctggtcgct ggcgatcgcc ggcgcgttct ggtggcgcgg cgcgatgctc
      661 gtcttgccgt tcgccgggat cgagctgctc gccgtcggtg ccgcgctcgc cttgtacgcg
      721 cgccacgccg gcgaccgcga gcgcgtgatc ctcacccccg gccggctcag cgtcgaatgc
      781 acgctcggcc ggcacaccga ccaggtcgag ttcgcgccgg cgtgggtccg ggtcgagccg
      841 gcccatggcg accgctcgct gatcgagctc tcgggcgagg gcaagcggat cgcgatcggc
      901 cgcttcgtgc ggcccgagct gcgccgcgcg ctcgccgacg agctgcgcgc cgcgctcagg
      961 cgcttcggcg ccgcacggcc gcgcgacgcc ggcaccgcct gaccaacgaa caacaagctc
     1021 acgtggcaac accgatgatg acgatgagag cctcttcgcg cctggccgcc ggcctgcttg
     1081 cgtccctcgc cacgacgctg gccctcgcgg caccggccgt gcgcgacctt gccggcggcc
     1141 cggcggtcaa ccagttcgac ctccacccgc cgatgtcgca gatcgcggcc gaccagcagt
     1201 ggttgcacaa cttcatgctg atcgtctgca cggtgatctt catcgccgtc ttcggcgtga
     1261 tgttctattc gatcatcaag caccgcaagt ccaagggggc gcgcgccgcc aacttccacg
     1321 agagcacgac ggtcgagatc gcctggacgg tcgtgccgtt catcatcgtc atcctgatgg
     1381 cgttgccggc gacgcgggtc gtcgtcgcga tgaaggacac gtcggcggcc gatctgacga
     1441 tcaaggccac cggcatccag tggaagtggg gctacgacta tctcaacggc gagggcgccg
     1501 gcatcggctt cctgtcgacg ctcgacgtcg cccagcgcga gatgtccgac cgcggcaagc
     1561 cggagggcga tgactacctg ctgaaggtcg acaacccgct ggtcgttccg gtcgaccgca
     1621 aggtgcgcat catcacgacc gccaacgacg tgatccacgc cttctacgtg ccctcgctcg
     1681 gcgtccagga gacggcgctg cccggcttcg ttcgcgacac ctggtttcgc gccaccaagg
     1741 tcggcagcta ctacggccaa tgctcgcagc tctgtggcaa ggagcactcg tacatgccga
     1801 tccacgtcaa ggtcgtctcg cagctcgact acaccgcctg ggtcgacggc aagaagaagg
     1861 aagcggcagc caaggccgac gatccgaaca aagtctggga gctgccggcg ctggcggcgc
     1921 gcggcgagca gatctacgcg gccaactgcc aggtctgcca ccagcccaac ggcaagggcg
     1981 gcgggccgat caaggcgctc gacggctcgc cgaccgtgct cgacgccgac aagaccaagc
     2041 agatccacgt cctgctaaac ggccagaaca acggcgcgat gccgtcgtgg aagcagctct
     2101 ccgacaccga gatcgccgcc gtggtcacgt tcaccaagaa ccactggtcg aacgccaccg
     2161 ggcaggtcgt gcagccgacc gaagtcgctg ccgcacgcaa gtagtcaaga tacgcagagg
     2221 acagcaattc catgagcgca gtcatcggcc acgaaggcca cgcccacccg gcgggccacg
     2281 atcacgccca cgacgatcac gagcaccacg gcgcgccgca cggctggcgc cgctgggtct
     2341 acgcgaccaa ccacaaggac atcggcacga tgtacctggt gttcgcgttc acgatgttca
     2401 tggtcggcgg cgtactcgcc ctggcgatcc gggccgagct gttccagccg ggcctgcagt
     2461 tcatgcatcc gcagttcttc aaccagctga cgacgatgca cggcctgatc atggtcttcg
     2521 gcgcgaccat gccggcgttc gtcggcttcg cgaactggct ggtgccgctg cagatcggcg
     2581 cccccgacat ggcgttcgcg cgcatgaaca acctaagctt ctggctgctc atcccggcgg
     2641 cgatcatgat cgtcggctcg ttcttcatgc cgggcggcgc gcccgccgcc ggctggacgc
     2701 tctacgcgcc gctgacgctg cagatgggcc cgtcgatgga cgccggcatc ttcgccctgc
     2761 acatcctggg cgcgagctcg atcatgggct cgatcaacat catcgtcacc atcctcaaca
     2821 tgcgcgcgcc ggggatgacg ctgatgaaga tgccgctctt ctgctggacc tggctgatca
     2881 ccgcctacct gctgatcgcc gtgatgccgg tgctcgccgg ggcgatcacg atgacgctca
     2941 ccgaccgtca cttcggaacg agcttcttca acccggcggg cggcggcgac ccggtgatgt
     3001 accagcacat cttctggttc ttcggccacc ccgaggtcta catcatgatc ctgccggcgt
     3061 tcgggatcat tagcgcgatc atcccggcat tctcgaggaa gcgcctgttc ggctacacct
     3121 cgatggtcta cgcgacggcg tcgatcgcga tcctctcgtt cattgtctgg gcgcaccaca
     3181 tgttcaccca gggcatgccg gtgacgggcc agctcttttt catgtacgcg accatgctga
     3241 tcgc
//
LOCUS       DASVHM010000014         3552 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_938395, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000014 DASVHM010000000
VERSION     DASVHM010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3552
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_938395"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..655
                     /locus_tag="VF308_00240"
     CDS             <1..655
                     /locus_tag="VF308_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7435110.1"
                     /translation="VVIGGGAGGVELAMAVRHRLGGAARIHLVSGGPALLAAQSAALR
                     RRALRALRLREIGVIEDSVVEIRADHVVLGSGARLACDTPVVAIGVSAPRWLRGSGLA
                     LDGAGFVATGATLQSLSHPHVFAAGDVAARADAPRPRSGVYAVRAGPPLADNLRRALA
                     GGAMAAYSPQRRSLNLLSCGDRHAIAAWGERALEGRLVWRWKDFIDRRFVAAGRPGP"
     gene            complement(652..1803)
                     /locus_tag="VF308_00245"
     CDS             complement(652..1803)
                     /locus_tag="VF308_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015015996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEX7435111.1"
                     /translation="MANLKSFASAALLLALSGLARADLSVIIVVEPTSRQDAFLLPRA
                     SLESSLGKALGQTVAVSVTEDLADAMRATRSGGYDVFVAPAQVAASALARGYELVGST
                     DKSEHFVLVGKRSLAATGALRGARIYLPQQDSIYTYMARGMLNAGGLSFKDLRNVQYE
                     RYPQAGLVAVSLGATDATVIRASDWEEYARDNPGIGRALATSGSVPGGFSVVIKKELA
                     PDLRSKAAKWFQNPGNVNGSKPAGIRAELAEYKAIAELGTFTPTSLPGAKLVTAREVQ
                     QLVAQGAVIVDTRTEKEYKTKRVAHAVFAPYHEKSLKDVAFDMTQDDFAALDKLDKSK
                     PTIFSCNGAECWKSYKASKAAGAHGFTQVYWFRGGLPEWEEAGLAVDKN"
     gene            complement(1969..2805)
                     /gene="tolA"
                     /locus_tag="VF308_00250"
     CDS             complement(1969..2805)
                     /gene="tolA"
                     /locus_tag="VF308_00250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098567 - periplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HEX7435112.1"
                     /translation="MDAATLPRLRDASMPRPPDGLGTGAVLAVLVHLLLVAALAFSVN
                     WRVHEPESVTAELWSAVPQVAAPRETRSPPEPAPALAESRGPARVPRVAPEPARPADA
                     QIAIEKARREEAQRARDARDRALAEAARRERAAQDAEERRKKELAEQARKEEAALAAQ
                     REAYLKRLQGQANATGGAESTGTAARSSGTSTGYAGRIRARIRPNIVFTDSVSGNPLA
                     TVEVRCAPDGTIVSRKLIQGSSNAAWDEAVLRAIDRTEVLPRDTDGRVPPVFEIGFRP
                     HD"
     gene            complement(2810..3238)
                     /locus_tag="VF308_00255"
     CDS             complement(2810..3238)
                     /locus_tag="VF308_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HEX7435113.1"
                     /translation="MAAVSHRGATRRRTISEINMVPFIDVMLVLLIIFMVTAPLITTG
                     MVDLPTVGKSSRQPDHVVELIVAGDAGVRLRVDGVDKGALPLAAVAARVLEAQQGVAT
                     TPVVISADRSVRYEAVVKVMDTLQRAGVQRVGLSVKNAGG"
     gene            complement(3245..>3552)
                     /locus_tag="VF308_00260"
     CDS             complement(3245..>3552)
                     /locus_tag="VF308_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008906091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEX7435114.1"
                     /translation="ASVGSVSPYVGLLGTVWGIMHSFRGLANVQQATLAAVAPGIAEA
                     LVATAIGLFAAIPAVIAYNRFARDIDRIAIQLETFIEEFSNILQRNAGALPAPAREG"
BASE COUNT          467 a         1244 c         1250 g          591 t
ORIGIN      
        1 ggtcgtcatc ggcggcggcg ccggcggcgt cgagctcgcg atggcggtgc gccaccggct
       61 cggtggcgcg gcgcgcatcc acctcgtcag cggcggaccg gcgctgcttg ccgcgcagtc
      121 cgcggcgctg cgaaggcgcg cgctgcgcgc gctgaggttg cgcgagatcg gggtgatcga
      181 agacagtgtc gtggagatcc gcgccgatca cgtcgtgctc ggctccggtg cgcggctggc
      241 gtgcgacacg ccggtcgtcg cgatcggcgt gagcgcgccg cgctggcttc ggggcagcgg
      301 cctcgcgctc gatggcgccg ggttcgtcgc caccggtgcc acgctgcaaa gcctgtcgca
      361 tccgcacgtc tttgccgcgg gcgacgtcgc cgcgcgcgcc gatgcgccgc gcccgcgcag
      421 cggcgtctac gcggtgcgcg ccggccctcc cctcgcggac aacctgcggc gcgcgcttgc
      481 gggtggcgcg atggccgcgt acagcccgca gcgccggtcc ttgaacctgc tgtcctgcgg
      541 cgaccgccat gccatcgcgg cgtggggcga gcgcgcgctc gaagggcgcc tggtgtggcg
      601 gtggaaggat ttcatcgacc ggcgcttcgt cgctgccggg cgtcccgggc cctagttctt
      661 gtccacggcg agcccggctt cttcccactc cggcaggccg ccgcggaacc agtagacctg
      721 cgtgaatccg tgcgctccgg cagccttact cgccttatac gacttccagc attcggcccc
      781 gttgcacgag aagatcgtcg gcttggactt gtcgagcttg tcgagcgcgg cgaagtcgtc
      841 ctgggtcatg tcgaaggcca cgtctttcag gctcttctcg tggtaaggcg cgaacaccgc
      901 gtgcgccacg cgcttggtct tgtattcctt ctcggtgcgg gtgtcgacga tcaccgcgcc
      961 ctgggcgacg agctgctgca cttcgcgcgc cgtgacgagc ttggctcccg gtaggctcgt
     1021 cggggtgaag gtgccgagtt cggcgatggc cttgtactcg gcgagttcgg cacggatgcc
     1081 ggccggcttg gacccgttga cattgcccgg gttctggaac catttcgccg cctttgagcg
     1141 cagatccggc gcgagctcct tcttgatcac caccgagaag ccgcccggca ccgacccgga
     1201 agtcgccagc gccctgccga ttcccggatt gtcgcgcgca tattcttccc agtcgctcgc
     1261 gcggatgacg gtcgcgtccg ttgcccccag gctcaccgcc accaagccgg cctgcgggta
     1321 gcgttcgtac tgcacgttgc gcagatcctt gaacgacagg cccccggcat tgagcatgcc
     1381 gcgcgccatg taggtgtaga tcgaatcctg ctgcggcagg tagatcctgg cgccgcgcaa
     1441 cgcaccggtc gctgcaaggc tgcgcttgcc gaccagcacg aaatgttcgg acttgtcggt
     1501 cgagccgaca agctcgtagc cgcgcgcgag cgccgatgcc gcgacctggg ccggtgcgac
     1561 gaacacgtcg tacccgccgc ttcgggtcgc gcgcatcgca tcggcgaggt cttcggtcac
     1621 ggagacggcg accgtctggc cgagggcctt gcccagactt gattccaggc tcgcgcgcgg
     1681 gagcaagaat gcatcctggc gcgaagtcgg ctcgacgacg atgatgaccg agagatctgc
     1741 acgggcgagg cccgagagcg cgaggagaag cgctgcggag gcgaacgatt tcagatttgc
     1801 catgatgggg tgtctaggtc gagaagggcg acgcacggcc tcaattattg cttccacccg
     1861 ccgctcgccg gggacacacg gcgtgccatg ttgcccatga tcgcccaggc cggcaccgag
     1921 tggggcactt cctgaggcac gtgggcacgc atttcgtatg aacagaccct agtcgtgcgg
     1981 cctgaatccg atctcgaata ccggcggcac gcgcccgtcg gtgtcgcgcg gcagcacctc
     2041 ggtcctgtcg atcgcgcgca gcaccgcttc gtcccaggcg gcgttgctgc tgccctggat
     2101 gagcttgcgg ctcacgatcg tcccgtccgg cgcgcaccga acctcgaccg tggcgagcgg
     2161 attgccgctc acgctgtcgg tgaacacgat gttgggcctg atgcgtgccc tgatgcgccc
     2221 ggcgtagccg gtcgaagtgc cgctgctgcg cgccgccgtg ccggtgctct cggccccgcc
     2281 ggtcgcgttc gcctggccct gcagccgctt cagataggcc tcgcgttgcg ctgcgagcgc
     2341 cgcttcctcc ttgcgcgcct gctcggcgag ctctttcttg cggcgctctt cggcatcttg
     2401 tgcggcgcgt tcgcgccgcg ccgcctcggc aagggccctg tcgcgcgcgt ccctcgcgcg
     2461 ttgcgcctcc tcgcgccggg ccttctcgat cgcgatctgc gcatcggccg ggcgcgcggg
     2521 ctccggcgcg acgcgcggga cccgagccgg gcctctcgat tccgcgagcg ccggggccgg
     2581 ttcgggtggc gacctcgttt cgcgcggtgc cgccacctgg ggcaccgccg accacagctc
     2641 ggccgtgacg ctttctggtt cgtggacgcg ccagttgacg ctgaaggcga gcgccgcgac
     2701 gagcagcagg tggacgagta ccgcgagcac tgccccggtg cccaggccgt cgggcgggcg
     2761 cggcatcgaa gcgtcgcgca ggcgggggag ggtcgcggcg tccatcggct cagccgccgg
     2821 cgttcttgac cgacaggccg acgcgctgca cgccggcgcg ctgcagcgtg tccatgacct
     2881 tgacgacggc ctcgtacctg accgatcgat cggccgatat cacgaccggc gtcgtcgcca
     2941 cgccctgctg cgcttcgagc acgcgcgccg cgaccgccgc aagcggcagc gcgcccttgt
     3001 cgaccccgtc gacgcgcagg cgcacgccgg catcgccggc gacgatgagt tcgaccacat
     3061 ggtcgggctg tcggctgctc ttgccgaccg tcggcaggtc gaccatgccg gtcgtgatca
     3121 gcggggcggt gaccatgaag atgatcagca gcaccagcat cacgtcgatg aacggcacca
     3181 tgttgatctc gctgatggtg cggcggcgcg tggcgccccg atggctgacg gcggccatgg
     3241 ccgttcagcc ttcgcgtgcg ggcgccggca aggcgccggc gttgcgctgc aggatgttcg
     3301 agaactcctc gatgaaggtc tcgagctgga tcgcgatgcg gtcgatgtcg cgggcgaacc
     3361 ggttgtaggc gatgaccgcg gggatcgccg cgaacaggcc gatcgcggtg gcgaccagcg
     3421 cttcggcgat ccccggggcc acggcggcga gcgtcgcctg ctgcacgttc gccaagcccc
     3481 ggaacgaatg catgatcccc cagaccgtgc ccagcaaccc cacgtagggg ctcaccgaac
     3541 cgaccgaggc ga
//
LOCUS       DASVHM010000015         1899 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1226830, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000015 DASVHM010000000
VERSION     DASVHM010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1226830"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VF308_00265"
     CDS             <1..205
                     /locus_tag="VF308_00265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435115.1"
                     /translation="VEAAAEAGGDSDASSDTSLDDLLKSLGGDDTASTGEAPAETADA
                     EPAASDDAEMDPDLAALLKSLEG"
     gene            complement(191..394)
                     /locus_tag="VF308_00270"
     CDS             complement(191..394)
                     /locus_tag="VF308_00270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019429756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HEX7435116.1"
                     /translation="MTDTPFPTRVVRCPTCGGDSLYAVTNPYRPFCSARCKNNDFGAW
                     ASEDFRVEPSEPPEDPEGPSTLE"
     gene            complement(409..1164)
                     /gene="zapD"
                     /locus_tag="VF308_00275"
     CDS             complement(409..1164)
                     /gene="zapD"
                     /locus_tag="VF308_00275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007854534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapD"
                     /protein_id="HEX7435117.1"
                     /translation="MILYEYPFNESIRTMLRLEHLFDRLGQLMVRDGAVDHHYALATI
                     FEIMDVGSRADLKSDLLKDLEKHKVQLNGYRGNPAISEAALDTIVARIDRAFGQLNEL
                     PGKVGAGLTANEWLMSIRSRISIPGGTCEFDLPAYYAWQQLPPQRRRTDLHKWVESLM
                     PLAGALQVLLGLLRDSGVPHKVTTTGGQYQQSLAQGRVYHLMRVRLDAAEELVPEISG
                     HRLMVLVRMMRQDADGRLRPAATDTSFELTLCA"
     gene            complement(1266..1880)
                     /gene="coaE"
                     /locus_tag="VF308_00280"
     CDS             complement(1266..1880)
                     /gene="coaE"
                     /locus_tag="VF308_00280"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828106.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEX7435118.1"
                     /translation="MTAATSLRIGLTGGIGSGKSTVAELLAELGAAIVDTDLIARRLS
                     GPGGAAIAAIADAFGADVIDTDGALDRSRMRAIAFADASAKLRLEAILHPLIGEESEG
                     QAVAAALPIIVFDVPLLVESGRWPARVDRIWVVDCREATQLARVFARSGWSDATIRAV
                     IDQQASRARRRAHADAVIYNDGIELAELARQVRLLWQEGMALIG"
BASE COUNT          294 a          618 c          686 g          301 t
ORIGIN      
        1 ggtcgaagcg gccgcggagg cgggaggcga ctccgatgcg tcgagcgaca cgagtcttga
       61 cgaccttctc aagagtctcg gtggcgacga caccgcgtcg accggggaag cgccggccga
      121 gacggcggat gcggaacccg ctgccagcga cgatgccgag atggaccccg acctcgccgc
      181 gctcctcaag tcactcgagg gttgagggcc cttccgggtc ttccggaggc tcggacggtt
      241 cgacccggaa atcttcgctg gcccaggccc cgaagtcgtt gttcttgcaa cgcgcactgc
      301 aaaacggacg atacgggttc gtgacggcgt agaggctgtc gccgccgcag gtcgggcagc
      361 ggacgacgcg cgtcgggaag ggcgtatcgg tcatcggggc agccgcgctc atgcgcagag
      421 ggtgagttcg aagctcgtgt cggtggccgc cggccggagg cgcccatcgg cgtcttgcct
      481 catcatccgc accagcacca tcaggcggtg gccgctgatt tccgggacga gttcttccgc
      541 ggcgtcgagg cgaacacgca tcaggtggta gacgcggccc tgcgccagac tctgctggta
      601 ctggccgccg gtcgtcgtga ccttgtgcgg cacgcccgag tcgcgcaaca ggccaagcag
      661 aacctggagt gcgccggcaa gcggcatcag cgattcgacc cacttgtgca ggtcggtgcg
      721 gcgccgctgc ggcgggagtt gctgccaggc gtagtaggcc ggcaggtcga actcgcaggt
      781 gccgcccggt atgctgatcc ggctgcggat gctcatcagc cactcgttgg cggtgagccc
      841 tgcaccgacc ttgccgggca gctcgttgag ctggccgaag gcgcggtcga tgcgggcgac
      901 gatcgtgtcg agcgccgctt cggagatcgc cggattgccg cgatagccgt tgagctggac
      961 cttgtgtttc tccaggtcct tcagcagatc ggatttgagg tcggcgcgcg agccgacatc
     1021 catgatctcg aagatcgtgg cgagcgcgta gtggtggtcg acggcgccat ctcgcaccat
     1081 cagttggccg aggcggtcga acaggtgttc gagccgcagc atcgtgcgga tgctctcgtt
     1141 gaaggggtac tcgtagagga tcaaggctcg gttcagcgat caggcggtcg ggtcggcgcg
     1201 ccgcccgcgg aaaaggtggg cgcaggcgat tgttccatag ggtggcagcg ccggatcaaa
     1261 gccggtcacc caatcagcgc catgccttcc tgccagagca ggcgcacctg gcgggccagt
     1321 tcggcgagct cgatgccatc gttgtagatg accgcgtcgg catgggcccg gcgccgcgcg
     1381 cgcgacgcct gctggtcgat gacggcgcga atcgtcgcgt cgctccagcc cgagcgggcg
     1441 aacacgcgcg ccagctgcgt ggcttcgcgg caatcgacga cccagatccg gtcgactcgc
     1501 gccggccagc gccccgattc gaccagcaga ggcacgtcga aaacgatgat cggcagcgca
     1561 gctgcgacgg cctggccctc gctttcctcc ccgatcagcg ggtgcaggat ggcttcgagc
     1621 cgcagcttcg cgctcgcgtc ggcgaaggcg atggcgcgca tgcgcgagcg gtcgagtgcg
     1681 ccgtccgtgt cgatgacgtc ggcaccgaaa gcgtccgcga tcgcagcgat cgcggccccg
     1741 ccgggcccgg acaaccggcg cgcgatcagg tcggtgtcga cgatcgcggc gccgagttcg
     1801 gcgagcagct ccgcgactgt gctcttgccg ctgccgatgc cgccggtcag cccgatgcgc
     1861 agcgacgttg ccgcggtcat ggcgcgcgcg atcaggccc
//
LOCUS       DASVHM010000016         2523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_649949, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000016 DASVHM010000000
VERSION     DASVHM010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2523
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_649949"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1004
                     /locus_tag="VF308_00285"
     CDS             <1..1004
                     /locus_tag="VF308_00285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005663211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7435119.1"
                     /translation="RVRTMAVLRIAFLSSAVLELFSALGVAMVAVYVGFHLLGTLGFG
                     SWGRQLNLGEGLFILLLAPAFFEPLRELSAVWHDRAAGEAALDSLARLAQGGVPLPGS
                     QAGAAMNGSGFANAPTVQIDGLHFAHPGEEAIFDDFDLRVGAGEHVALMGPSGAGKTA
                     LLSLIAGLVPATRGDIVMGGTLLSDRTVSTLRTRIAWMGQRPHVFADSVQANVTLGRP
                     DVRSLQVVEAMKFADLQGVAQAHPGVALGEGGTGLSGGEVVRLAVARMALDPRADLLL
                     VDEPTAHLDTDTARRVTDALIELARGKTLIVATHDRVLAARLNRVIRLDVLPMKAAA"
     gene            1001..>2523
                     /locus_tag="VF308_00290"
     CDS             1001..>2523
                     /locus_tag="VF308_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011870879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7435120.1"
                     /translation="MKAWRDLRTIAETLPGAQRRQLALGAALAAVTVLMGMGLLGLSG
                     WFITGTALAGLQALTAIGFDVFMPSAGIRLLALGRTGARYAERLVTHDATFGVLAALR
                     ERLFRGWAQPDAARQLLARPAKLLFRLTADVDALESIYLRLLVPAGAALGAALLAGVV
                     LGLVNLWMGVLLAIWLIGVGVLLTWSVARRARRPAVRRAHAIETLRARAVDLVAGQTE
                     LLMAGRLDAQRDALATADRHLAAADLALNRIEVRAGMAHGITATLTLGAVLLAVGALV
                     GEGAIGAPTAALALLVALTATEPLASLRRGALDAGRTWLAMRRLAPRVAATPQAEQGT
                     LPTGGLAVTLTDVIAVHAGSRTPTLQHLSLSLIAGEHVALVGSSGAGKSTLLGLVAGE
                     LAPQSGGVRTQPHCLLTQRPELFHDSLRDNLRLADPSASDARLWTVLQAAGLANDVRA
                     LAAGLNTVLGEGGLGLSGGQSRRLALARLLLRDVPLWLLDEPTEALDPLTAHDVLRRL
                     "
BASE COUNT          309 a          852 c          920 g          442 t
ORIGIN      
        1 tgcgcgtgcg aaccatggcg gtgttgcgca tcgcgttcct gtcgtcggcc gtgctggagc
       61 tgttctcggc actcggggtc gcgatggttg ccgtgtatgt cggattccac ttgctcggca
      121 cgctcgggtt cggttcctgg ggtcgacagt taaacctcgg cgagggcttg ttcatcctgc
      181 tgctcgcgcc tgcattcttc gaaccgctgc gggagctctc ggcggtgtgg cacgaccgcg
      241 cggccggcga ggcagcgctg gattcgctcg cccggctggc gcaaggcggt gtgccgttgc
      301 ctggttcaca ggccggtgcc gcgatgaacg gcagcggatt cgccaacgcg cccacagtgc
      361 agatcgacgg cctgcacttc gcccatcccg gcgaggaggc aatcttcgat gacttcgacc
      421 tgcgcgtcgg cgcgggcgag catgtcgcgc tgatggggcc gagcggtgcg ggcaaaacgg
      481 cgctgctgag cctgatcgca ggactcgtgc cggccacccg tggcgatatc gtgatgggcg
      541 gcacgttgct ttccgaccga acggtgtcga cgctgcgcac acgcatcgcc tggatgggcc
      601 aaaggccgca cgttttcgcc gactcggtac aggccaacgt gacgctcggg cggcccgatg
      661 tgcgcagctt gcaggtcgtc gaggccatga agttcgccga tctgcaaggc gtggcgcagg
      721 cgcatcctgg tgtcgcgctt ggcgagggcg gcacgggcct gtcgggcggc gaggtcgtga
      781 ggctcgcggt ggcccggatg gcgctggacc cgagggccga tctcttgctc gtcgacgagc
      841 ccaccgccca cctcgatacc gacacggccc gtcgcgtcac tgacgcgctg atcgagctcg
      901 cccgcggcaa gacgctgatc gtggcgacgc acgaccgcgt cctggcggcc cgattgaacc
      961 gcgtgatccg gctcgatgtg ctgccaatga aggcggccgc atgaaggcgt ggcgcgacct
     1021 gcgcacgatc gccgaaacgc tgcccggcgc gcagcgtcgc cagcttgcgc tgggtgccgc
     1081 tctcgcggct gtcaccgtgc tgatgggcat gggcctgctt ggcctgtcgg gttggttcat
     1141 cactggcacc gcgctcgcgg ggctgcaggc gttgacggcg atcggcttcg acgtgttcat
     1201 gccgtccgcc ggcattcgcc tgcttgccct gggccgcacc ggggcgcgct atgcggaacg
     1261 gctcgtgacg cacgacgcca cgttcggcgt gctggccgcg ttgcgcgagc ggctgttccg
     1321 cggctgggcc cagcccgatg cagcgcgcca gttgctggcg cggccggcaa agttgttgtt
     1381 ccgactgaca gccgatgtcg atgccctcga gtcgatctac ctgcggctgc tcgtgcctgc
     1441 cggcgcggcg ctcggcgctg cgctgctcgc cggtgtagtc ctcgggctcg tgaacctctg
     1501 gatgggcgtg ctgctggcga tctggctgat tggcgtgggt gtcttgttaa cgtggtcggt
     1561 cgcccgccgt gcgagacgcc ccgctgtgcg gcgggcgcac gcgattgaaa cgttgcgggc
     1621 tcgcgctgtc gaccttgtcg ccggccagac cgagttgctg atggccggcc ggctcgatgc
     1681 gcagcgtgac gcgctggcca cggccgaccg tcacctggcg gccgccgatc tggcgctgaa
     1741 ccgcatcgaa gtccgtgccg gcatggccca cggcatcact gccacgctca ccctcggcgc
     1801 ggtgctgctc gccgtcggtg cgctggtggg cgagggcgcg atcggtgcgc cgacggcggc
     1861 gctcgcgttg ctggtcgcgc tgacagccac cgagccgctc gcttcgctgc ggcgtggtgc
     1921 gctcgatgca ggccgcacct ggctggcgat gcgccggctc gcgccgcgcg tcgcagcaac
     1981 tccccaagcc gagcagggaa cgctgccgac gggtggactg gcagtgacac tgaccgacgt
     2041 gatcgccgtc catgccggca gtcgcacgcc gacgctgcag cacttgtcgt tgagcctgat
     2101 cgctggcgaa cacgttgcgc tggtcgggag cagcggcgct ggcaagtcga cgctcctcgg
     2161 tctggtggcg ggcgaactcg cgccgcaatc cggcggtgtg cgcacgcagc cgcattgcct
     2221 gctgacccag cgccctgaac tctttcacga cagcctgcgc gacaacctgc gcctggccga
     2281 ccctagcgcc agtgatgccc ggctgtggac cgtgcttcag gcggccggct tagcgaacga
     2341 cgtgcgagcg ctggccgccg gcctgaacac cgtgctcggc gaaggggggc tgggcctgtc
     2401 gggcgggcag tcgcgccgcc tcgcactcgc gcggttgctg ttgcgcgatg tgccgctgtg
     2461 gctgctcgac gagccgaccg aagcgctcga cccgttgacc gcgcacgatg tgctgcggcg
     2521 gct
//
LOCUS       DASVHM010000017         2049 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1227023, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000017 DASVHM010000000
VERSION     DASVHM010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1227023"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..512
                     /locus_tag="VF308_00295"
     CDS             <1..512
                     /locus_tag="VF308_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015866048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7435121.1"
                     /translation="LVVNSLLALWLFERFGLSLGQAGLFFFVTGLLSAASQLAAPTVA
                     RRIGLLNTMVFTHIPANLCLVAAAFAPTLTIVLGLLFLRSALSQMDVPTRTAFVMAVV
                     TPAERSAAASFTAVPRSLASAVSPTLAGAWMAAGWLAAPLFACGVLKIAYDLALLFAF
                     RRVRLPDAD"
     gene            617..1984
                     /locus_tag="VF308_00300"
     CDS             617..1984
                     /locus_tag="VF308_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019573076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEX7435122.1"
                     /translation="MRAASTPNLIDVQALRVGMFIHLDVGWMSHPFPLSSFKITSPQQ
                     VATIRALGLKRVRWNPQQSDPAEPDAARAALVEGRAGVAAPPGEADAGAPSSVAVETP
                     EPAPEGAPIGTAPAGTRTVDAAAARRRALGRQRVTLQLCERQFTEASRACKQVTDLVL
                     MKPQEARVQAEALTRALADKMLGEQELYIRLLTEAAGDKCSLHAINVAIVALLMGRAF
                     GFGQDDMVDIGVGALLHDIGKLEIPLRLRHRDESFTPSEQRDYEDHVAQGLAVARRMG
                     LSAGATLVIAQHHEHADGSGFPLKLNTDRMTAAARIVALINRYDNLCNPHFLAKALTP
                     HEALSVLFAQGKTKYDTAILAGFIKMMGVYPAGSTVQLTDDRYAIVVGVNSSRPLKPS
                     VLVHETGMPREEALVLDLESVQGLGIRRSIKPIQLPPAALEYLAPRQRVAYFFEPAVA
                     AEACV"
BASE COUNT          277 a          752 c          682 g          338 t
ORIGIN      
        1 ggctggtcgt gaattcgctg ctggcgctct ggcttttcga gcgcttcggc ctgtcgctgg
       61 gccaggcggg cctgttcttc ttcgtcaccg gcttgctttc ggccgcctcg cagctcgccg
      121 cccccacggt ggcgcgccgg atcggcctcc tcaacacgat ggtcttcacg cacatccccg
      181 ccaacctgtg cctcgtggcc gccgcgttcg cgccgacctt gacgatcgtc ctcggcctgc
      241 tttttctgcg cagcgcgctt tcgcagatgg acgtgccgac ccggaccgcg ttcgtgatgg
      301 ccgtcgtgac cccggccgag cgcagcgcgg ccgcgagttt caccgcggtg ccgcgcagcc
      361 tcgcgtcggc cgtgtcgccg accctcgccg gcgcctggat ggcggccggc tggctcgcag
      421 cgccgctgtt cgcctgcggc gtcctgaaga tcgcctacga cctcgccctg ctttttgcct
      481 ttcggcgcgt gcgcctgccc gacgccgatt gagggccgca tcgcctttgc gcttcggcgt
      541 tgcaccgatt caagtcggcg ccccgctgcg ccgataaccc ggtacccgcg ggcgccggtt
      601 gcccgtggcc acgggcatga gagcagccag cacccccaac ctgatcgatg tgcaagcgct
      661 acgcgtcggg atgttcatac atctcgacgt gggctggatg tcgcatccgt ttccgctcag
      721 cagcttcaag atcacctcgc cgcagcaggt cgccacgatc cgcgcgctgg gcttgaagcg
      781 ggtgcgctgg aacccgcagc aaagcgatcc cgccgagccc gacgctgcgc gcgcggcgtt
      841 ggtcgaggga cgggccggtg tcgctgcgcc gccgggcgag gcggatgccg gagcgccgtc
      901 ctctgtcgct gtcgagacgc cggaaccggc gccggagggt gcgccaatcg gcaccgcgcc
      961 tgccgggacc cggaccgtcg atgccgccgc cgcgcgtcgc cgcgcgcttg gccggcaacg
     1021 cgtcaccctg caactttgcg aacgccagtt caccgaggcg tcgcgtgcct gcaagcaggt
     1081 gaccgacctc gtcctgatga agccgcagga ggcgcgcgtc caggccgagg ccctgacgcg
     1141 cgcgctggcc gacaagatgc tcggcgagca ggaactgtac atccgcctgc tgaccgaggc
     1201 ggcgggcgac aagtgttcgc tgcatgcgat caacgtcgcc atcgtcgcgc tgttgatggg
     1261 ccgcgccttc ggattcgggc aggacgacat ggtcgatatc ggcgtcggcg cgctgctgca
     1321 cgacatcggc aagctcgaga ttcccctgcg cctgcgccac cgcgacgaga gcttcacgcc
     1381 gagcgagcag cgcgactacg aggaccacgt cgcgcagggc ctcgcggtgg cgcgccggat
     1441 gggtctttcc gccggggcca cgctggtgat cgcccagcac cacgagcatg ccgatggcag
     1501 cggctttccg ctcaagctca acaccgaccg catgaccgcg gcggcgcgca tcgtggcgct
     1561 catcaaccgc tacgacaacc tctgcaaccc ccatttcctc gccaaggcgc tgaccccgca
     1621 cgaggccctc tcggtgctgt tcgcgcaggg caagacgaaa tacgacacgg cgatcctcgc
     1681 cggcttcatc aagatgatgg gcgtgtatcc ggccggttcg acggtgcagc tcaccgacga
     1741 ccgctacgcg atcgtcgtcg gtgtcaattc ctcgcgtccg ctcaagccga gcgtgctggt
     1801 gcacgaaacc ggcatgccgc gcgaggaggc gctcgtgctc gacctcgaga gcgtccaggg
     1861 cctcggcatc cggcgcagca tcaagccgat ccagcttccc ccggccgcgc tcgaatatct
     1921 cgcgccacgc cagcgcgtgg cctatttctt cgagccggcc gtcgcggcgg aggcgtgcgt
     1981 gtgaaagcgc cctggggctt tgcggcctcg ctcgcgccca cggggacgcc ggcggcctgg
     2041 ggcccgctg
//
LOCUS       DASVHM010000018         3994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1082973, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000018 DASVHM010000000
VERSION     DASVHM010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3994
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1082973"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..349)
                     /locus_tag="VF308_00305"
     CDS             complement(<1..349)
                     /locus_tag="VF308_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HEX7435123.1"
                     /translation="MSSTFDAGRFGSGQAVHRIEDPALLAGLGRFTDDVVAEGQTYLA
                     FLRSPYAHARIVSVDVEAARATPGVLAVFTGAELVAAGVKPNPTIEMFRRADGKTTVS
                     PPRHALAHEVVRFV"
     gene            complement(470..985)
                     /locus_tag="VF308_00310"
     CDS             complement(470..985)
                     /locus_tag="VF308_00310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435124.1"
                     /translation="MNRRDTGVFLVAALIGCGAASGQSGATVEAPLLRVELADGAART
                     FTRTDLERIPAESAEARLRDGQAFTVTGVSVTTLLELAGLDLGANLGGAAVVGHALVA
                     RAADGYVAVFGLAEVDPHFGRAPLMVVWKNADGSALRPGVGPVQLINAGESRSGRWVR
                     QLEVLEVKALR"
     gene            complement(999..1811)
                     /locus_tag="VF308_00315"
     CDS             complement(999..1811)
                     /locus_tag="VF308_00315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7435125.1"
                     /translation="MAALVNMTAGIAIGAASLIAMAQPAATEISVYAAGSLRSALLDA
                     ARAFEAMHPGTRLRFTFGASGLLKDRLLAGETADVFASANMEHPEALRQAGQADAPVR
                     FARNSMCALVRPGLDVSAESLVQRMLDPAVKLGTSTPKADPSGDYAWLLFERIERSGV
                     PGAFAALAGKALQLTGGPQSPPPPADRNVYGALVMTGLADIFITYCTSATLAVREQPG
                     LGMVGVPASIAVAADYGLVVMKTAPQAAREFAAFLLGSNGRRVLAAHGFSPP"
     gene            complement(1815..2666)
                     /locus_tag="VF308_00320"
     CDS             complement(1815..2666)
                     /locus_tag="VF308_00320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEX7435126.1"
                     /translation="MVSGLIHVRRVGALLLLWSVLGLWTLGAAAQDRYITMASTTSTE
                     QSGLFPHLLPAFKRATGIDVRVVAVGTGQALDIGRRGDADVLFVHDQAAEEKFVAEGF
                     GIKRSPVMVNDFVLIGPGSDPAGVRGHDIVVALQKLGASTAAFISRGDNSGTHAAELR
                     YWKIAGIDAPDAKASGRMFDYRACGCGMGPALNIASSSDAYVLADRGTWLNFRNRGNL
                     AILVEGDTRLFNQYGVIVVNPLRHPQVKTALAQAFADWVVSPDGQAAIAAYKVGGEQL
                     FFPNAKP"
     gene            complement(2651..3373)
                     /locus_tag="VF308_00325"
     CDS             complement(2651..3373)
                     /locus_tag="VF308_00325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7435127.1"
                     /translation="MSGSVRPVLLRLTDASVHFADLPALRGVTLAVQRGDFIALVGAN
                     GSGKTTLLRLLHGLVPHSGRREVAEPEPVQAMVFQRPFMLHLSVWNNLRLALWLGGAR
                     VPRAERTRRALEALQRVGLTELRERPARVLSGGEQQRLALARAWAVRPDVLFLDEPTA
                     NLDPSAKKEVEALLAGFAAEGMTLVMSTHNLGQAKRLATRVVYVDQGEVHLDLPTGQF
                     FGPGTEGRAELFLKGELPWSLD"
     gene            complement(3370..>3994)
                     /locus_tag="VF308_00330"
     CDS             complement(3370..>3994)
                     /locus_tag="VF308_00330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7435128.1"
                     /translation="VSGTACLCAAGFGLAGGAWLAAAQFPGKRLALLLLNTLLALPSV
                     VVGLAVYLLLSRSGPLGSWGILFTPAAMVVAQTILVLPVVAALARQLVADGLRDARDP
                     LRSMGAGPMLAALLMLVHERWAVVTVLLTAFGRAIAEVGAVMIVGGNIDGVTRVMTTA
                     IALETSKGDLPLALALGLVLLGVVALLNVVIAALPRGGLAPAIVEAR"
BASE COUNT          679 a         1429 c         1367 g          519 t
ORIGIN      
        1 cgacgaagcg cacgacctcg tgggcgagcg cgtggcgcgg cggcgagacc gtggtcttgc
       61 cgtcggcgcg cctgaacatc tcgatggtcg ggttcggctt cacgcccgcc gccaccagct
      121 cggcgccggt gaagaccgcg agcacaccgg gcgttgcccg cgccgcttcg acgtcgaccg
      181 agacgatgcg cgcatgggcg tacggcgagc gcagaaaggc gaggtaggtt tgaccctcgg
      241 cgacgacgtc gtcggtgaaa cgccccaggc ccgcgaggag agccgggtcc tcgatgcggt
      301 gcaccgcctg accgctgccg aaacggccgg catcgaacgt ggagctcatc gtctgttcct
      361 tgtgaagagt gcgccgaccc gtgattctga tggcaagcac gcgcgcgcgt ctggcggcgc
      421 gcgcagcacc cgcctcgaga gctcggctcg cacgctgcga cccggcgatt cagcgcagcg
      481 ccttcacctc gagcacttcg agttgccgca cccatcggcc ggaccgcgac tcgccggcat
      541 tgatcagctg caccggcccg acccccggcc gcaacgcgct gccgtcggca ttcttccaaa
      601 ccaccatcaa cggtgcacgg ccgaaatgcg ggtcgacttc ggcgagcccg aagaccgcga
      661 catacccgtc cgccgcgcgc gcgacgagcg cgtggccgac caccgctgcg ccgccgaggt
      721 tcgcacccag atcgagcccg gccagctcga gcagcgtggt gaccgagacg ccggtgacgg
      781 tgaaggcctg gccatcgcgc agcctcgctt cggcagactc tgccggaatg cgctcgaggt
      841 ccgtgcgcgt gaaagttcgg gcagcaccgt cggcgagttc gacgcgcaag agcggcgcct
      901 ccacggtcgc gccggactga cccgaagcgg cgccgcaacc gatcaaggcg gcgacgagga
      961 agacaccggt gtcgcgacga ttcatccgat ccaggccttc acggcggaga aaagccgtgc
     1021 gccgcgagca cccgccggcc attcgaaccg agcaggaaag ccgcgaactc gcgcgccgcc
     1081 tgcggggccg tcttcatcac gaccaggcca tagtcggcag cgacggctat cgatgccgga
     1141 acgccgacca tgccgagacc cggctgctcg cgcacggcga gggtcgcgct ggtgcaatag
     1201 gtgatgaaga tgtcggcaag ccccgtcatc acgagcgcgc cgtacacgtt gcgatcggcg
     1261 ggcggcggcg gcgactgcgg gcctccggtc agctgcaggg ccttgcccgc gagcgcggcg
     1321 aaggcgcccg gcacaccact ccgttcgatc cgctcgaaca gcaaccaggc atagtcgccg
     1381 gaggggtcgg ccttcggcgt ggaagtgccg agcttcaccg cggggtcgag catccgctgc
     1441 acgagcgact cggcgctcac gtccagcccc ggccgcacca gcgcgcacat cgagttgcgc
     1501 gcgaatcgta cgggggcatc ggcttgcccg gcctggcgca aggcctcggg gtgctccatg
     1561 ttggccgaag caaacacgtc cgcggtctcg cccgccagca gccgatcctt gagcagaccc
     1621 gacgccccga aggtgaagcg cagccgggtg ccggggtgca tcgcctcgaa ggcgcgcgcg
     1681 gcgtcgagca gggccgaacg caggctgccc gccgcataga ccgaaatctc cgtcgcagcg
     1741 ggctgtgcca tggcgatcag gctcgcggca ccgatggcga tgcccgccgt catgttcaca
     1801 agcgcggcca tcggttacgg cttcgcattc gggaagaaga gctgctcgcc gccgactttg
     1861 taggcggcga ttgccgcctg cccgtcggga gagacgaccc agtccgcgaa cgcctgcgcg
     1921 agcgccgtct tcacctgcgg gtgacggagc gggttgacga cgatgacgcc gtactggttg
     1981 aaaagccggg tgtcgccttc gaccaggatc gcgagattgc cgcggttcct gaaattgagc
     2041 caggtgccgc gatcggccaa cacgtaggcg tcgctcgacg acgcgatgtt gagcgccggg
     2101 cccatgccgc agccgcaggc gcggtagtcg aacatgcggc ccgaagcctt cgcgtcgggc
     2161 gcatcgattc ccgcgatctt ccagtagcgc aactcggccg cgtgcgtgcc gctgttgtcg
     2221 ccgcgcgaga tgaaggcagc cgtcgatgcg cccagcttct ggagcgcgac gacgatgtcg
     2281 tggccgcgca ccccggccgg gtccgatccg ggcccgatga ggacgaaatc gttgaccatc
     2341 accggcgagc gcttgatacc gaagccttcg gcaacgaact tctcttcggc ggcctggtcg
     2401 tgcacgaaga gcacgtcggc atcgccgcgc cggccgatgt cgagcgcctg tccggtgccg
     2461 accgcgacca cgcgcacgtc gatcccggtc gcccgcttga aggccgggag caagtgcggg
     2521 aacaagcccg actgttcggt gctggtggtc gaagccatcg tgatgtatcg atcctgagcc
     2581 gcggcaccca gcgtccagag accgagcacc gaccagagca acagcaacgc gccgacacgg
     2641 cgcacatgga tcaatccaga gaccatggca actctccttt caggaacaat tcggcgcggc
     2701 cttcggtgcc cggtccgaag aactgtccgg tcggcagatc gagatgcacc tcgccctggt
     2761 cgacgtagac cacgcgggtc gcgagccgct tggcctggcc gaggttgtgc gtgctcatca
     2821 cgagcgtcat gccttcggcg gcgaagcctg ccagcaaggc ctcgacctcc ttcttcgccg
     2881 aaggatcgag gttggcggtc ggctcgtcga gaaagagcac gtcgggccgc accgcccagg
     2941 cccgcgccag cgcgagccgc tgctgctcgc cacccgaaag cacgcgcgcc ggacgctcgc
     3001 gcagttcggt caggccgacc cgctgcagcg cctcgagcgc acgccgggtg cgctcggcac
     3061 gcggcacgcg cgctccgccg agccagagcg cgaggcgcag gttgttccac accgacaggt
     3121 ggagcatgaa cgggcgctgg aacaccattg cctgaaccgg ctcgggttcg gcgacttcgc
     3181 gcctgccgct gtgcggcacg aggccgtgca gcaatcggag cagcgtggtc ttgccggaac
     3241 cgttggcgcc caccagcgcg atgaaatcgc cgcgctgcac cgcgagcgtc acgccgcgca
     3301 gcgccggcag atcggcgaaa tgcacggagg cgtccgtgag gcgcagcagg acggggcgga
     3361 ccgacccgct catcgcgcct cgacgatcgc gggtgcgagc ccgccgcgcg gcagcgccgc
     3421 gatgaccacg ttcagcagcg cgaccacgcc gagcaacacc aggcccagcg cgagcgccag
     3481 cggcaggtcg cccttgctcg tctcgagcgc gatggctgtc gtcatcacac gggtcacgcc
     3541 gtcgatattg ccgccgacga tcatcaccgc gcccacctcg gcgatcgccc ggccgaacgc
     3601 ggtcagcagc accgtgacga cggcccagcg ctcgtgcacg agcatcaaca gcgccgcgag
     3661 catcggcccc gcgcccatcg agcgcagcgg gtcgcgcgcg tcgcgcaggc cgtcggcgac
     3721 gagctggcgc gcgagcgcag ccaccaccgg cagcaccagg atcgtctgcg caaccaccat
     3781 cgctgccggc gtgaagagaa tcccccacga cccgagcgga ccgctgcgcg aaagcagcag
     3841 gtagaccgcg agcccgacca cgaccgaggg cagcgccagc aaggtgttga gcagcagcag
     3901 ggcgaggcgc ttacctggga attgcgccgc cgccagccag gccccgccgg caaggccgaa
     3961 gcccgccgcg cacagacacg ctgtgccgct gact
//
LOCUS       DASVHM010000019         2227 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_578530, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000019 DASVHM010000000
VERSION     DASVHM010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2227
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578530"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..278)
                     /locus_tag="VF308_00335"
     CDS             complement(<1..278)
                     /locus_tag="VF308_00335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435129.1"
                     /translation="MKRSHLLGLALALAVLLGVPPLLKSYGIYLFSYWLVYVIATMGL
                     NLTVGYAGQKSLGHAAFFGIGAYTVAILMKAGFSFWFGLPVAMLGCFV"
     gene            complement(297..1172)
                     /locus_tag="VF308_00340"
     CDS             complement(297..1172)
                     /locus_tag="VF308_00340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011801051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435130.1"
                     /translation="MTDFLQLLFSGLATGSIYALAALGFTLLWQASGTINFAQGEFVM
                     LPAFMMLAFMTVGAPLLVAFVCTCVVAVVVLGWGFKRGVADRLLKYGLMPIVVATLGL
                     SIAIRNGVRAGFSAQAHPFPSLFADKLFNVAGVTVTLADMGTLLCALALVLGTQAFLS
                     RTVTGRAMQAVAQNTESATVLGIDVPRMIFYTFAINAVLACAAALLVTPVYLAKFDMG
                     ESLGTKAFFAAIIGGFNNSRGALLGGLIVGVAENLAAAYISATYKDAVALVIFMLVIL
                     FKPQGLLGKKEERKV"
     gene            complement(1254..>2227)
                     /locus_tag="VF308_00345"
     CDS             complement(1254..>2227)
                     /locus_tag="VF308_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435131.1"
                     /translation="AAGGILGNKIETFVSDTQSNPGVAKGLAQKAVDDGVFAVIGPTF
                     SGSIMVSMAETRRAEIPNFTGGEAASITQQGNPYIFRTSFTQTTAMPKVARYIASNLK
                     AKTVAVIFVNNDFGVGGRGAFAKAAEAAGLKVVADISTDAGQVDFSAPVLKLKQSNAD
                     VAFVYTNEEESARALRELRKQGWTKPIVGETTLTGQKVIELAGEAANGAIAHVGLTVD
                     APIPAMRAFRVKFEKEYKYISDHNGIKGYTAVYMLKAGIEKVGKLDRAAVAKALHGLT
                     ISAAKEPGVLMNVTIDENGDLDRESFIVEVKNGKQEVKETLPPLGKK"
BASE COUNT          387 a          728 c          733 g          379 t
ORIGIN      
        1 atgacgaagc agcccagcat cgctaccggc aggccgaacc agaaactgaa acccgccttc
       61 atcaggatcg ccaccgtgta ggcgccgatg ccgaagaacg ccgcgtggcc gagcgacttc
      121 tggccggcgt agccgaccgt caggttcagc cccatcgtgg cgatgacgta caccagccag
      181 tagctgaaca ggtagatgcc ataactcttg aggagcggcg gcacgccgag cagcacggcg
      241 agcgcgagcg cgaggccgag gaggtgagac cgcttcatcg tcatgtcttc ccgcactcag
      301 accttgcgct cttccttctt gccgagcaga ccctgcggct tgaagaggat caccagcatg
      361 aagatgacca gcgcgaccgc atccttgtag gtcgccgaga tgtacgcggc ggccaggttt
      421 tcggcgacgc cgacgatcag gccgcccagc agggcaccgc gcgaattgtt gaagccgccg
      481 atgatggccg cgaagaaagc cttcgtgccg agcgattcgc ccatgtcgaa cttggccagg
      541 tagaccggcg tgacgagcag tgccgcggcg caggcgagca ccgcgttgat cgcgaaggtg
      601 tagaaaatca tgcgcggcac gtcgatgccg agcacggtgg cgctttcggt gttctgcgcc
      661 accgcctgca tcgcgcggcc ggtgacggtg cgcgacagga aggcctgcgt gccgaggacc
      721 agggcgagcg cgcagagcag cgtgcccatg tcggccagcg tgacggtgac gccggcgacg
      781 ttgaaaagct tgtcggcgaa caggctgggg aaggggtgcg cctgggcgct gaagccggcg
      841 cgcacgccgt tgcggatggc gatcgacagg ccgagggtcg ccaccacgat cggcatcagg
      901 ccgtacttga gcagccgatc ggccacgccg cgtttgaagc cccagccgag cacgacgacc
      961 gcgacgacgc aggtgcacac gaaggcaacc agcagcggcg cgcccaccgt catgaaggcc
     1021 agcatcatga acgccggcag catgacgaac tcgccctgcg cgaaattgat cgtccccgag
     1081 gcctgccaca acaacgtgaa gccgagggcc gccagcgcat agatgctgcc ggtggcgagc
     1141 ccggagaaca gcaactgcag aaagtcggtc atgttgggcc cgtgcaggaa gcgggtcggc
     1201 gctgtcccgg cgcgccgagc atgtgcgccg ccacggcggc gcgcctgggt accctacttc
     1261 tttcccagcg ggggcaaggt ttccttgact tcctgcttgc cgttcttgac ttcgacgatg
     1321 aagctctcgc ggtcgaggtc gccgttctcg tcgatcgtca cgttcatcag gacgcccggt
     1381 tccttcgccg cggagatcgt caggccgtgc agcgccttgg cgaccgccgc gcggtcgagc
     1441 ttgccgacct tctcgatgcc ggccttcagc atgtagaccg ccgtgtagcc cttgatgccg
     1501 ttgtggtccg agatgtactt gtattccttc tcgaacttga cgcggaacgc gcgcatcgcc
     1561 ggtatcggcg cgtcaaccgt cagccccacg tgcgcgatag cgccattggc ggcttcgccg
     1621 gcgagctcaa tcaccttctg gcccgtcagc gtggtctcgc cgacgatcgg cttggtccag
     1681 ccctgtttgc gcagttcgcg cagcgcgcgc gccgactcct cttcgttggt atagacgaag
     1741 gcgacgtcgg cattgctctg tttgagcttg agcaccggcg ccgagaagtc gacctgaccg
     1801 gcgtcggtgg agatgtcggc caccaccttc aagcccgccg cttcggccgc cttggcgaag
     1861 gcgccgcgtc cgcccacgcc gaagtcgttg ttgacgaata tcaccgcgac cgtcttcgcc
     1921 ttcaggttgc ttgcgatgta gcgcgccacc ttcggcatgg ccgtggtctg cgtgaagctg
     1981 gtgcgaaaga tgtacggatt gccctgctgc gtgatcgaag ccgcctcgcc gccagtgaag
     2041 ttggggatct cggcgcgccg ggtctcggcc atgctgacca tgatcgaacc cgaaaacgtc
     2101 ggcccgatca cggcgaacac gccgtcgtcg acggccttct gggccagacc cttggcgacg
     2161 cccgggttcg attgcgtgtc gctgacgaac gtctcgatct tgttgccgag aatgccgccg
     2221 gccgcgt
//
LOCUS       DASVHM010000020         3346 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_145794, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000020 DASVHM010000000
VERSION     DASVHM010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3346
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145794"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..843
                     /locus_tag="VF308_00350"
     CDS             <1..843
                     /locus_tag="VF308_00350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009516084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA acetyltransferase"
                     /protein_id="HEX7435132.1"
                     /translation="GYGGLPVRTRGVANDLWMPNATAPGAFAQLASAYAAKHGVQMTE
                     LKRAMAHISVKSHANAALNPKAHLRNKITEEDVLKAQTIAAPLGLYDCCGVSDGAACA
                     ILTTPEIARALRPGVEVITIKAVELSVSNGEEAGFNRWDGAHIATAREAGARAYASAG
                     VSDPRTQIHMAEVHDCFSITEAVLMEDLGFSAPGRTIHDVLDGIFDRDGVLPVQPDGG
                     LKCFGHPIGASGLRMVYEIYQQIHGRAGERQLKRVDLGLTHNLGGHPHQNVCAVSIVG
                     RHGV"
     gene            892..1653
                     /locus_tag="VF308_00355"
     CDS             892..1653
                     /locus_tag="VF308_00355"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018425530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEX7435133.1"
                     /translation="MRGLKGKTAIVTGAGSGIGRAIALRLAAEGVIVGVFDIRREGAQ
                     ETVAAIASKAYAVTCDITDYAAVQAAVAEFEAATGAGTDILVNNAGWDTPMPFLKTDE
                     AFWRKVTAINWFGPLHMTHAVAKGMAARKSGRVINIASDAGRVGSSGEVVYSGCKGAT
                     IAFGKALAREVARSNVTVNTVCPGPTDTPAMDAFVGTGEAGQKIRDAMVRGVPLGRIG
                     QPDDYPGLVAFLASDDAAFITGQTISVSGGLSMHG"
     gene            1666..2463
                     /locus_tag="VF308_00360"
     CDS             1666..2463
                     /locus_tag="VF308_00360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX7435134.1"
                     /translation="MAKDYKDILYEVRDGVVRITINRPEVYNAFRNQTLEELIDGLRR
                     ADEEKSANVMVLAGAGDKAFCTGGDQKVHLSEDGLYGPRGSIGMPIEEMQTALRDLRK
                     VSIAKVQGFAIGGGNVFATLCDLTIASEKAVFGQVGPKVGSVDPGWGTAYLARVVGEK
                     KAREIWFLCRRYSAAEAAAMGLVNKVVAHDQLDAEVDQWCKEINEMSPTALTIAKRSF
                     NADSENIRGIGFLGIQTVKHYYQSEESKEGVRAFNERRKPDFKKHAA"
     gene            2487..>3346
                     /locus_tag="VF308_00365"
     CDS             2487..>3346
                     /locus_tag="VF308_00365"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX7435135.1"
                     /translation="MDELIRTTLEPDGVLVATIDMPGRTMNVFSADLMDALDALMDRV
                     DADPSVRSCVVTSGKPTFLAGADLVMVRGFTDEAKHATQARMFELCGRLGRQFVRLEA
                     CAKPWVAAVNGIALGGGLELALACRVRLVSDEPRTQLGTPEVRWGLLPGAGGTQRLPR
                     LAGFEPALDLLLTGRSIDPATAVRLGIFARALPPDQLLDAAKATARALHGQPYDVKAK
                     FANLAQADVPAPSEAGARAAAARHGVGDDDYDRYPAYAAIVDSVLQGAHLPLAEANAV
                     EMNQFLRLMF"
BASE COUNT          574 a         1185 c         1141 g          446 t
ORIGIN      
        1 ggctacggcg gcctgccggt gcgcacgcgc ggcgtggcca acgacctgtg gatgcccaac
       61 gcgaccgccc ccggcgcgtt cgcgcagctc gcatcggcct acgccgccaa gcacggcgtg
      121 cagatgaccg agctgaagcg ggcgatggcg cacatctcgg tgaagagcca tgcgaatgcg
      181 gccctcaacc cgaaggcgca cctgcgcaac aagatcaccg aggaagacgt gctgaaggcg
      241 cagacgatcg cagcgccgct cggcctctac gactgctgcg gcgtgagcga cggcgcggcc
      301 tgcgcgatcc tgaccacgcc cgagatcgcg cgcgcgctgc ggccgggcgt cgaggtgatc
      361 acgatcaagg ccgtcgagct ctcggtcagc aacggcgagg aagccggctt caaccgctgg
      421 gacggcgccc acatcgcaac cgcgcgcgaa gccggtgccc gcgcctatgc gagcgccggc
      481 gtgagcgacc cgcgcaccca gatccacatg gccgaggtcc acgactgctt ctcgatcacc
      541 gaagccgtgc tgatggaaga cctcggcttc agcgcaccgg ggcgcaccat ccacgacgtg
      601 ctcgacggca ttttcgaccg cgacggcgtg ctgccggtgc agcccgacgg cggcctcaag
      661 tgcttcgggc atccgatcgg cgcatcgggt ctgcgcatgg tctacgagat ctaccagcag
      721 atccacgggc gcgccggcga gcgccagttg aagcgcgtcg acctcggtct cacgcacaac
      781 ctcggcggcc acccgcacca gaacgtctgc gccgtgtcca tcgtcggtcg ccacggcgtc
      841 tgaacgggca ccgccacctc tctcccactc gaatcctact caggagcaag catgcgaggt
      901 ttgaaaggaa agaccgcgat cgtgaccggc gccggcagcg gcatcggacg cgccatcgcg
      961 ctgcgcctgg ccgccgaagg cgtgatcgtc ggcgtgttcg acatccgtcg tgaaggcgcg
     1021 caggaaacgg tcgcggcgat cgccagcaag gcctacgccg tcacctgcga catcaccgac
     1081 tacgccgcgg ttcaggcggc ggtcgccgag ttcgaagcag cgaccggcgc cggcaccgac
     1141 atcctcgtga acaacgcggg ctgggacacg ccgatgccgt tcctgaagac cgacgaggcg
     1201 ttctggagga aggtcacggc gatcaactgg ttcggcccgc tgcacatgac gcacgccgtc
     1261 gccaagggca tggcggcgcg caagagcggg cgagtcatca acatcgcgtc ggacgccggc
     1321 cgggtcggct cctcgggcga ggtcgtctac tccggctgca agggcgcgac gatcgcgttc
     1381 ggcaaggcgc tcgcgcgcga ggtcgcgcgc agcaacgtca ccgtcaacac ggtctgcccc
     1441 ggcccgaccg acacgccggc gatggacgcc ttcgtcggca ccggcgaagc gggccagaag
     1501 atccgcgacg cgatggtgcg cggcgtgccg ctcggccgca tcggccagcc cgacgactat
     1561 cccggcctcg tcgccttcct cgcgagcgac gacgccgcct tcatcaccgg ccagacgatc
     1621 agcgtctcgg gcggactttc catgcacggc taaggagaaa ctcgaatggc caaggactac
     1681 aaggacatcc tctacgaagt gcgcgacggc gtcgtgcgca tcacgatcaa ccgcccggag
     1741 gtctacaacg ccttccgcaa ccagacgctg gaagagctga tcgacggcct gcgccgggcc
     1801 gacgaggaaa agagcgccaa cgtgatggtg ctggcgggcg ccggcgacaa ggccttctgc
     1861 accggtggcg accagaaggt gcacctgagt gaggacggcc tttacggccc gcgcggcagc
     1921 atcggcatgc cgatcgagga gatgcagacg gcgctgcgcg acctgcgcaa ggtctcgatc
     1981 gccaaggtgc agggcttcgc gatcggcggc ggcaacgtgt tcgcgacgct ctgcgacctg
     2041 accatcgcga gcgagaaggc cgtcttcggc caggtcggcc ccaaggtcgg ctcggtcgac
     2101 ccgggctggg gcacggcgta cctcgcccgc gtcgtcggcg agaagaaggc gcgcgagatc
     2161 tggttcctgt gccgccgcta cagcgctgcc gaggccgccg cgatgggcct cgtcaacaag
     2221 gtcgtggcgc acgaccagct cgacgccgaa gtcgaccagt ggtgcaagga gatcaacgag
     2281 atgagcccga ccgcgctcac catcgcgaag cgctcgttca acgccgacag cgagaacatc
     2341 cgcggcatcg gcttcctcgg catccagacc gtcaagcact actaccagag cgaggaatcg
     2401 aaggaaggcg tgcgcgcctt caacgagcgc cgcaagcccg acttcaagaa gcacgccgcc
     2461 tgaattcggc cgccgcagga aatgccttgg acgagctgat ccgcacgacc ctcgagcccg
     2521 acggcgtgct cgtggcgacg atcgacatgc cggggcggac gatgaacgtc ttctcggccg
     2581 atctgatgga cgcgctcgat gcgctgatgg atcgtgtcga cgccgatccg tcggtgcgga
     2641 gctgcgtcgt cacgtcgggc aagccgacgt tcctcgccgg tgccgacctc gtcatggtgc
     2701 gcggcttcac cgacgaagcg aagcacgcca cgcaggcgcg catgttcgaa ctgtgcggac
     2761 gcctcggtcg gcagttcgtg cggctcgagg cctgcgccaa gccctgggtc gcggccgtca
     2821 acggcatcgc gctcggcggc gggctcgagc tggcgctggc gtgccgcgtc cgcctcgtca
     2881 gcgacgagcc gcgcacccaa ctcggcacgc cggaggtgcg ctggggcctg ctgcccgggg
     2941 ccggcggcac gcaacggttg ccgcgcctgg ccggcttcga gccggcgctc gacctgctgc
     3001 tgacgggccg gtcgatcgac cccgccacgg ccgtgcgcct cggcatcttc gcgcgcgcgc
     3061 tgccgccgga ccagttgctc gacgcggcga aggccaccgc acgcgccctg cacggccagc
     3121 cctacgacgt gaaggccaag ttcgcgaatc ttgcgcaggc cgacgtgccc gcccccagcg
     3181 aggccggcgc gcgcgcggct gcagcccgac atggcgtcgg tgacgacgac tacgaccgct
     3241 acccggccta cgcggcgatc gtcgacagcg tgctgcaggg cgcgcacctg ccgctggccg
     3301 aggccaacgc ggtggaaatg aaccagttcc tgcgcctgat gttcag
//
LOCUS       DASVHM010000021         3438 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1011113, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000021 DASVHM010000000
VERSION     DASVHM010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3438
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1011113"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..563
                     /locus_tag="VF308_00370"
     CDS             <1..563
                     /locus_tag="VF308_00370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005793883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar basal body-associated FliL family
                     protein"
                     /protein_id="HEX7435136.1"
                     /translation="LIGAVALALLLVAGAGAAFWLKSRAAHAAAESADEEIATPEQVA
                     KTDPAHPPTFLPLDAFVVNLADRDVDRYAQIGITLEVDSALFADQMKAYMPAIRNAIL
                     MIIAHKTSRELLERAGKEQLAAEIMRETVRPMGIDIPAPEPAAPKTAEAAPEDASAEV
                     PALKKPVRRGPHNPVRHVHFSNFIIQ"
     gene            577..1584
                     /gene="fliM"
                     /locus_tag="VF308_00375"
     CDS             577..1584
                     /gene="fliM"
                     /locus_tag="VF308_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007853747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEX7435137.1"
                     /translation="MSEQILSQDEVDALLQGIAGDAETPEHEEVRSDGGVRSYDISSQ
                     EKIVRGRMPNLEIINERFARNVRIGLFNLIHKSPEISIGGIKVQKYSAFLREIVAPTN
                     FNIMSVRPLRGSGLIVCDPPLVFAVVDALFGGTGKFRTRIEGRDFSPTEQRIIQRLVD
                     VVATEYSRAWGGVYPLELEYQRSEMLPQFASIATPSEVVVSSSFAMEIGETSGSIHFC
                     IPYSTLEPIRDVLYSTVQGDGNEPDRRWLSMMKGQIQEAEVELVVELAHAPATVEQLL
                     AFKPGDFIELDLQRGVQAKVAGVPVFDCHYGTSNGKYALKVDQLLTGSQKGWIGDSHA
                     N"
     gene            1574..2014
                     /gene="fliN"
                     /locus_tag="VF308_00380"
     CDS             1574..2014
                     /gene="fliN"
                     /locus_tag="VF308_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEX7435138.1"
                     /translation="MPTDNSATAPEPQDPMAADWAAAAAGTRPETASELQGPADQVSP
                     APFTNFTPTGGSTVGNDINMILDIPVQLTVELGRTRIPIKNILQLAQGSVVELEAMAG
                     EPMDVLVNGYLIAQGEVVVVNEKFGIRLTDIVTPSERMRRLSRA"
     gene            2029..2388
                     /locus_tag="VF308_00385"
     CDS             2029..2388
                     /locus_tag="VF308_00385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliO"
                     /protein_id="HEX7435139.1"
                     /translation="MISQGFTSLLWFLAILALIPLALWLLKRTPMGGSASQGVLRSVA
                     ALPLSASQRIVTVEVGQGAARRWLVLGVTPQSITTLHMMEPQAELPGSTDPVPPQAAF
                     AQLLGRLRHAKGGSGEH"
     gene            2438..3163
                     /gene="fliP"
                     /locus_tag="VF308_00390"
     CDS             2438..3163
                     /gene="fliP"
                     /locus_tag="VF308_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548311.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HEX7435140.1"
                     /translation="MSLLSAFPEAALAQTAPNAGLPLVIGQGAGGTSYSVPIQTLLFF
                     TALSFLPAVLLLMTSFTRIVIVLSLLRQALGTQAAPPNQVVVGLSLFLTFFVMGPTID
                     KVYADAYQPYAENRIAFDEALKRGELPLRAFMMKQTRQADVMLFARLAKIDPGVKTAD
                     VPFKVLVPAFVTSELKSAFQIGFLVFLPFLIIDMIVASVLMSLGMMMLSPVLIALPFK
                     LMLFVLADGWNLLLGSLAASFAT"
     gene            3174..>3438
                     /gene="fliQ"
                     /locus_tag="VF308_00395"
     CDS             3174..>3438
                     /gene="fliQ"
                     /locus_tag="VF308_00395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011806883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEX7435141.1"
                     /translation="MDSQQVFTLGQQGLYMLLMVSAPLLLTVLAVGLIVSVFQAATQI
                     HEATLSFVPKIVAAVAVLAIAGPWMLTSLVEYLQRTLQSIPSVV"
BASE COUNT          572 a         1208 c         1089 g          569 t
ORIGIN      
        1 tcctgatcgg ggccgtggcg ctggcgctgc tgctggtggc cggcgcaggt gccgcgttct
       61 ggctgaagag ccgggcggcg cacgccgccg ccgagtcggc cgacgaggag atcgcgaccc
      121 ccgaacaggt cgccaagacc gaccccgcgc atccgcccac cttcctgccg ctcgacgcct
      181 tcgtcgtcaa cctcgccgac cgggacgtgg accgctatgc ccagatcggg atcacgctcg
      241 aagtcgacag cgcgctcttc gccgaccaga tgaaggccta catgcccgcc atccgcaacg
      301 cgatcctgat gatcatcgcc cacaagacct cgcgcgaact gctcgagcgc gccggcaagg
      361 aacagctcgc cgccgagatc atgcgcgaga cggtgcggcc catggggatc gacatccccg
      421 cgcccgagcc cgccgcgccg aagacggccg aggcggcccc cgaagatgcc agcgccgaag
      481 tgcccgccct gaagaagccg gttcggcgcg gcccgcacaa cccggtgcgt cacgtgcact
      541 tctccaactt catcatccag tgaacgagag cctcgaatga gtgaacagat cctctcgcag
      601 gacgaggtcg acgcgctgct gcagggcatc gccggcgacg ccgagacgcc cgagcacgaa
      661 gaggtgcgca gcgacggcgg cgtgcgcagc tacgacatct cgagccagga aaagatcgtc
      721 cgcgggcgca tgcccaacct ggagatcatc aacgaacgct tcgcccggaa cgtgcgcatc
      781 ggcctcttca acctgatcca caagagcccg gaaatctcga tcggcggcat caaggtgcag
      841 aagtacagcg ccttcctgcg cgagatcgtc gcgccgacca acttcaacat catgtcggtg
      901 cggccgctgc gcggcagcgg cctgatcgtc tgcgatccgc cgctcgtctt cgcggtggtg
      961 gacgcgctct tcggtggcac gggcaagttc cgcacccgca tcgaaggccg cgatttctcg
     1021 ccgaccgagc agcgcatcat ccagcgcctc gtcgacgtcg tcgcgaccga gtactcgcgg
     1081 gcctggggcg gggtctatcc gctcgagctc gaataccagc gctcggaaat gctgccgcaa
     1141 ttcgcgagca tcgccacgcc gagcgaagtg gtggtgtcga gctcgttcgc gatggagatc
     1201 ggcgagacca gcggcagcat ccacttctgc attccctatt ccacgctcga gccgatccgc
     1261 gacgtgctct attcgacggt ccagggcgac ggcaacgagc ccgaccggcg ctggctgtcg
     1321 atgatgaagg ggcagatcca ggaggccgag gtcgaactcg tggtcgaact cgcccacgcg
     1381 cccgcgacgg tcgagcaatt gctcgcgttc aagcccgggg atttcatcga actggacctg
     1441 caacgcggcg tccaggccaa ggtggccggg gttccggtgt tcgactgcca ctacggcacc
     1501 tcgaacggca agtacgcact caaggtcgat caactgttga ccggctccca gaagggctgg
     1561 atcggagact cccatgccaa ctgacaacag cgccaccgcc cccgaacccc aggacccgat
     1621 ggcggccgac tgggccgcgg ccgcagccgg aacacgcccc gagacggcct cggagctgca
     1681 gggccccgcc gaccaggtct cgcccgcgcc gttcacgaac ttcacgccga ccggcggaag
     1741 cacggtcggc aacgacatca acatgattct cgacatcccg gtgcagctca ccgtggagct
     1801 cgggcgcacg cggatcccga tcaagaacat cctgcagctc gcgcagggct cggtcgtcga
     1861 actcgaggcg atggctggcg agccgatgga cgtgctcgtg aacggctacc taatcgccca
     1921 gggcgaggtc gtcgtcgtca acgagaaatt cggcatccgc ctcaccgaca tcgtgactcc
     1981 gagcgagcgc atgcggcgcc tgagccgggc ctgattgcga caccctcgat gatttcccaa
     2041 ggcttcacgt ctctcctctg gttcctcgcg atcctcgccc tgattccgct ggcgctctgg
     2101 ctgctcaagc gcacgccgat gggcggaagt gcgtcgcagg gcgtgctgcg cagcgtcgcg
     2161 gcacttccgc tttcggcgag ccagcgcatc gtcacggtcg aagtcggcca gggcgctgcg
     2221 cgacgctggc tggtgctcgg cgtcacgccg cagagcatca cgacgctgca catgatggag
     2281 ccacaggccg agctgccggg ctccacggac ccggtgccgc cccaggccgc cttcgcgcag
     2341 ttgctcggcc ggctgcgcca cgccaaggga ggctccggtg agcactgagc cgcgccattt
     2401 cttgcgctgc gcaagcggcc tcggcgcgct cgccgccttg tcgttgttgt cggcctttcc
     2461 cgaagcggct ttagcgcaga ccgcgcccaa cgccggcttg ccgctcgtca tcggccaggg
     2521 cgcgggcggc acgagctact cggtgccgat ccagacgctg ctcttcttca ccgccctcag
     2581 cttcttgccc gcggtgctgc tcctgatgac gagcttcacg cgcatcgtca tcgtgctgag
     2641 cctgctgcgc caggccctcg gcacgcaggc cgcgccgccg aaccaggtgg tggtcggcct
     2701 gagcctcttc ctgacgttct tcgtgatggg tccgacgatc gacaaggtct acgccgacgc
     2761 ctaccagccc tatgctgaga acaggatcgc gttcgacgag gcgctcaagc gcggcgaact
     2821 gccgctgcgc gccttcatga tgaagcagac gcgccaggcc gacgtcatgc tgttcgccag
     2881 gctcgccaag atcgacccgg gcgtgaagac cgcggacgtg ccgttcaagg tgctcgtgcc
     2941 ggcgttcgtg acgagcgagc tgaagagcgc gttccagatc ggctttctcg tcttcctgcc
     3001 gttcctgatc atcgacatga tcgtcgcgag cgtgctgatg tcgctcggca tgatgatgct
     3061 ttcgccggtt ctgatcgcgc tgcccttcaa gctgatgctc ttcgtgctgg ccgacggctg
     3121 gaacctgctg ctcgggtccc tggccgcgag cttcgccacc tagcgacgac accatggatt
     3181 cacaacaggt cttcaccctg ggccagcaag gcctctacat gctgctgatg gtttcggcgc
     3241 cgctgctgct cactgtactc gccgtcggcc tgatcgtcag cgtgttccag gcggcgacgc
     3301 agatccacga ggcgactctg tcgttcgtgc cgaagatcgt cgcggcggtt gcggtgctcg
     3361 ccatcgcggg gccgtggatg ctgacctcgc tggtcgaata cctgcaacgc acgctgcaat
     3421 cgatcccgtc ggtcgtcg
//
LOCUS       DASVHM010000022         4458 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_145815, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000022 DASVHM010000000
VERSION     DASVHM010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4458
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145815"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1081
                     /locus_tag="VF308_00400"
     CDS             <1..1081
                     /locus_tag="VF308_00400"
                     /inference="COORDINATES: protein motif:HMM:NF013717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HEX7435142.1"
                     /translation="RFIAAPYRPPAEARDARHPFALNTGRLRDQWHGMSRSGTVARLF
                     GHEGSPVVRMNPHDLPRRGLKSGDLVELRSRRGGIVLPLLADDSVGRAQADVAMHWGD
                     EFVSGVSAEGVRHAGVNALTTGAYCPDSFQPELKHAAIGVTRLDLPWRLSAAAWLPAG
                     RSVEVREKLRAAMATFAYAACVPVAGPDGRTGVSFQAASATPIAPARADAIAAWLGLL
                     APTTLRYADPVRGTCRLLGLEGEGSGARLSALLLVGEAASADWLRLLWQEQLAVAPYG
                     RLLLAPQASSPQGLNARSAQVCNCLDVPESRIRSCLAGLAGQPGARVAALQAALKCGT
                     QCGSCLPDLRRLEQAVPAPIKALHQ"
     gene            1078..1869
                     /gene="cobA"
                     /locus_tag="VF308_00405"
     CDS             1078..1869
                     /gene="cobA"
                     /locus_tag="VF308_00405"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013901998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HEX7435143.1"
                     /translation="MKDDAVPDVWLVGAGPDDPDLLTVRALRVLGAADVVLCDDLVDR
                     RVLALVRPGARVLHVGKRGGRASTEQRFIHRAMVQQARRGLRVVRLKGGDPFVFGRGG
                     EECDALRAAGLRVEVVPGITAGIAAPAAIGVAVTDRRHAAGVAFVTGHCRNGGPTPNW
                     HALAQSGLTLVIYMGVARCALITGELLRGGLAPRTPAAAIAAAHTPRQRHVVCTLATL
                     AGEILRQEIESPAILVIGDVVKGAQGLPGQWPEATALAEEEFATA"
     gene            1931..3118
                     /gene="pobA"
                     /locus_tag="VF308_00410"
     CDS             1931..3118
                     /gene="pobA"
                     /locus_tag="VF308_00410"
                     /EC_number="1.14.13.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012206161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018659 - 4-hydroxybenzoate
                     3-monooxygenase activity [Evidence IEA];
                     GO_process: GO:0018874 - benzoate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate 3-monooxygenase"
                     /protein_id="HEX7435144.1"
                     /translation="MKVQVAIIGAGPSGLLLGALLHKAGIDALIIEQRSPDYVLGRIR
                     AGVLEQITVDLLEEAGVADRLHAEGLPHGGIELCFGGARHRIDLHKLTGGKRVMVYGQ
                     TEVTRDLMDARQAAGLTTVYEADQVTPHDFDGARPSVSYVKDGVTHRVDCDFIAGCDG
                     YHGVSRASVPAAALQTFERVYPFGWLGVLSETPPVSHELIYSNHERGFALCSMRSTTR
                     SRYYVQCALDDKVESWSDAAFWNELRSRLDPAAAAALVTGPSIEKSIAPLRSFVAEPM
                     RFGRLFLAGDAAHIVPPTGAKGLNLATADVGYLSRALAEHYAGKSDAGIDAYSQTCLR
                     RIWRAERFSWWFTSLMHKFPETGAFGRKMQAAELDYLVHSTAASTVLAENYVGLPLAA
                     GIQ"
     gene            3147..3788
                     /locus_tag="VF308_00415"
     CDS             3147..3788
                     /locus_tag="VF308_00415"
                     /inference="COORDINATES: protein motif:HMM:NF024809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX7435145.1"
                     /translation="MKLYSSPISSNARKVRLAASMLGIPLELVNIDLGKGAQRTPEFL
                     AINPMGRVPVLEDGDFVLTESAAIMAYLADAKPDSPLYPRDLKQRANVNRWLFWGASH
                     WGPAFAALAFEKWIKKFMQLGEPDLVQVKRQEDALRGLATVLDAHLASREWVCGPTIT
                     IADLAIAASLGAAERVQFRVADFVAMEVWFEKVKALEAWKSTEPPSLPTTATR"
     gene            complement(3848..4282)
                     /locus_tag="VF308_00420"
     CDS             complement(3848..4282)
                     /locus_tag="VF308_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435146.1"
                     /translation="MADHDHRHEHVAATAQRQGGAKDARQFVKFPEPLRIHTLANMRD
                     HLLTMAEIQGALASGAFDEASDLAERRLGMSSLEMHGAHEVAKYMPRGMQDAGTAMHH
                     TASQFAIAAKDASATADIKPVLASLAKLNQTCVACHATYRIQ"
BASE COUNT          668 a         1569 c         1530 g          691 t
ORIGIN      
        1 ccgcttcatc gccgcgccat atcgcccgcc cgccgaagca cgcgacgcgc gccatccgtt
       61 cgcactcaac accgggcgcc tgcgcgacca gtggcacggc atgagccgca gcggcacggt
      121 ggcacgcctg ttcggccacg agggcagccc ggtcgtgcgc atgaacccgc acgacctgcc
      181 gcggcgcggc ctgaaatcgg gcgacctggt cgagctgcgc tcgcggcgcg gcgggatcgt
      241 gctgccgctg ctcgccgacg attcggtcgg acgcgcccaa gcggacgtgg cgatgcactg
      301 gggcgacgaa ttcgtctcgg gcgtgtcggc cgagggcgtc cgccatgccg gcgtcaacgc
      361 cctgaccacg ggcgcgtatt gcccggactc tttccagccc gaactgaagc acgccgcgat
      421 cggcgtgacg cgcctcgacc tgccgtggcg tctcagcgcc gcggcctggt tacccgccgg
      481 acgaagcgtc gaggtgcgcg aaaagctgcg cgctgcgatg gccacgttcg cctatgccgc
      541 ctgcgtcccc gtcgccgggc ccgacggccg gacaggcgtg tcattccagg cggcgtcggc
      601 gacgccgata gcacccgcgc gcgccgacgc gatcgccgca tggctcggcc tgctcgcgcc
      661 gaccaccctg cgctatgccg acccggtgcg cggcacgtgc cgcctcctcg gcctcgaggg
      721 cgaaggcagt ggcgcgcgcc tttctgcctt gctgctcgtc ggcgaggcag cgtccgccga
      781 ctggctgcgc ctgctgtggc aggagcagtt ggccgtcgcc ccgtacggcc ggttgctgct
      841 tgcgccgcag gccagctcgc cgcagggatt gaacgcgcga agcgcgcagg tatgcaactg
      901 cctggacgtc ccggaaagcc gcattcgcag ctgcctcgcc ggcctcgccg gacagccggg
      961 cgcgcgcgtt gcggcgctgc aggcggcatt gaagtgcggc acgcagtgcg gctcgtgcct
     1021 gccggatttg cgccgcctcg agcaggcggt gccggcgccc atcaaggcgc ttcatcaatg
     1081 aaggacgacg ccgtgcccga cgtctggctg gtcggcgccg gcccggacga ccccgacctg
     1141 ctgaccgtgc gcgcgttgcg cgtgctcggc gcggccgatg tggtgctctg cgacgacctc
     1201 gtcgaccgcc gcgtgctcgc cctcgtgcgg ccgggggcgc gggtgctgca cgtcggcaag
     1261 cgcggcggac gggcctcgac cgagcagcgc ttcatccacc gcgcgatggt ccagcaagcc
     1321 cggcgcggcc tgcgcgtcgt ccgcctgaag ggcggcgatc cgttcgtctt cgggcgcggc
     1381 ggcgaggaat gcgacgcctt gcgcgcggcc ggcctgcggg tcgaggtggt cccgggcatc
     1441 accgcaggca tcgcggcacc ggcggcgatc ggggtcgcgg tgaccgaccg ccgccacgcc
     1501 gccggcgtcg ccttcgtgac cggacactgc cgcaatggag gcccgacgcc gaactggcac
     1561 gcgctcgcgc agagcggcct cacgctggtg atctacatgg gagtcgcgcg ctgcgccctg
     1621 atcaccggcg agctgctgcg cggcggcctc gcaccgcgga cgcccgccgc cgcgatcgcc
     1681 gcggcccaca cgccgcgcca acggcacgtc gtctgcacgc tggcgacgct agccggcgag
     1741 atcctgcgac aggagatcga gagtccggcc atcctcgtga tcggcgacgt ggtcaagggc
     1801 gcgcaaggcc tgcccgggca atggccggaa gccacggcgc tggccgaaga ggaattcgcg
     1861 acggcttgag ttctcgcctg ggccgcctcg acgatactgg cgcgtcccca ctcgccgcaa
     1921 aggatcgccc atgaaagtcc aggtggccat catcggcgcc ggcccgtcgg gcctgctgct
     1981 cggggcgctg ctgcacaagg ccggcatcga cgcgctcatc atcgagcagc gcagccccga
     2041 ctacgtgctc ggccgcatcc gcgccggcgt gctcgaacaa atcacggtcg atctgctcga
     2101 ggaggccggc gtggcagatc ggctccatgc cgaaggcctg ccgcacggcg gcatcgaact
     2161 gtgcttcggc ggcgctcgcc atcgcatcga cctgcacaag ctcaccggcg gcaagcgcgt
     2221 gatggtgtac ggccagaccg aggtcacccg cgacctgatg gacgcgcgcc aggccgcggg
     2281 cctcaccacc gtgtacgaag ccgaccaggt cacgccgcac gacttcgacg gtgcccggcc
     2341 gagcgtgagc tatgtgaagg acggcgtgac gcaccgcgtc gactgcgact tcatcgcggg
     2401 ctgcgacggc taccacggcg tcagccgggc aagcgtgccg gcggctgcct tgcagacctt
     2461 cgagcgcgtc tatccgttcg gctggctcgg cgtgctcagc gaaacgccgc cggtctcgca
     2521 cgagctgatc tattcgaacc acgaacgcgg cttcgccctg tgcagcatgc gctcgacgac
     2581 gcgcagccgc tactacgtgc agtgcgcgct cgacgacaag gtcgagagct ggagcgacgc
     2641 ggcgttctgg aacgaactgc ggagccgact cgaccctgcc gcggcggcgg cgctggtgac
     2701 cggcccgtcg atcgagaaga gcatcgcccc gctgcgcagc ttcgtcgccg agccgatgcg
     2761 cttcgggcgc ctctttctgg ccggcgacgc cgcccacatc gtgccgccca cgggggcgaa
     2821 gggcctgaac ctcgcgacgg ccgacgtcgg ctacctgtca cgcgcgctgg ccgagcacta
     2881 cgccgggaaa agcgacgccg gcatcgacgc ctattcgcag acctgcctgc gccgcatctg
     2941 gcgcgccgag cgcttctcgt ggtggttcac gtcgctgatg cacaagtttc cggaaaccgg
     3001 cgcgttcggc cggaagatgc aggcggccga gctcgactac ctcgtgcatt cgacggcggc
     3061 gtcgacggtc ctggcggaga actatgtggg gttgccgctg gcggcgggca tacagtagat
     3121 attcaatcgc caacaggccg caaacgatga agctctactc ctcacccatt tcgtccaatg
     3181 cgcgcaaggt tcgcttggcc gcatcgatgc tcggcatccc gctcgaactc gtcaacatcg
     3241 acctcggcaa aggcgcgcag cgcacgcccg agtttctcgc gatcaacccg atggggcgcg
     3301 tcccggtcct ggaggacggg gacttcgtcc tgacggaatc cgccgcgatc atggcctacc
     3361 tcgccgacgc caagccggac agcccgctct acccgcgcga tctgaagcaa cgggcgaacg
     3421 tgaaccgctg gctcttctgg ggcgcaagcc actggggtcc ggccttcgct gccctggctt
     3481 tcgagaagtg gatcaagaaa ttcatgcagc tcggcgagcc ggacctggtg caggtgaagc
     3541 gtcaagagga cgccttgcgc ggcctggcga ccgtgctcga tgcgcatctc gcttcgcgcg
     3601 aatgggtatg cggcccgacg atcacgatcg cggatctggc gattgcggcc tcgctcggtg
     3661 ccgccgagcg cgtgcagttc cgggtggccg acttcgtcgc catggaggtg tggttcgaga
     3721 aggtgaaggc gctcgaagcc tggaaatcca ccgagccgcc ctcgctgcct acaaccgcga
     3781 ccagatgacc tgaaacggtg ttggaaacct tcgcagcgac gcccgatgcc gggcatcgac
     3841 tcagacatca ttgaatccga taagtcgcgt gacaggcgac gcaggtttgg ttcagcttgg
     3901 ccaacgacgc cagcacgggc ttgatgtcgg cggttgccga tgcatccttg gccgcgatcg
     3961 cgaactggct ggccgtgtga tgcatcgccg tgcctgcatc ctgcatgccc ctgggcatgt
     4021 acttcgccac ttcgtgagct ccgtgcattt cgagagacga catcccgagg cgccgttcgg
     4081 caaggtcgct cgcctcgtcg aacgcgccgc tcgccagcgc cccctggatc tcagccatcg
     4141 tcaacaggtg gtctctcatg ttcgccagcg tgtggatgcg caagggctcc gggaacttca
     4201 cgaactgccg agcgtccttt gcgcccccct gccgctgcgc ggtggcagcc acgtgttcgt
     4261 gacgatggtc gtggtcagcc atttcggccg ccagagccga gctgttggcg cctgcgctca
     4321 gggcaagtgc gaagcaaaat gcaagtctgt tcatgagcgt tctggttcga tggggtggga
     4381 aactctggac gaggggcgct gtcgggtcat tggcggaggc gaaaccccgt gctgcagttt
     4441 caagaggtca cccgcctg
//
LOCUS       DASVHM010000023         5429 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_578605, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000023 DASVHM010000000
VERSION     DASVHM010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5429
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578605"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1375
                     /gene="tssC"
                     /locus_tag="VF308_00425"
     CDS             <1..1375
                     /gene="tssC"
                     /locus_tag="VF308_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033104 - type VI protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     large subunit"
                     /protein_id="HEX7435147.1"
                     /translation="EQAVLTLAQQALSQTNLIGSDVVMSIEAMIAELDKRLSTQVNAI
                     LHHEDFQKLESAWRGLHYLVNNTETDEMLKIRVMNISKLDLGKTLKRYKGTSWDQSPL
                     FKKVYEEEYGQFGGEPFGCIMGDYHFDHSPPDVELLGEMSKVSAAAHTPFIAGASPTL
                     MQMGSWQELANPRDLTKIFTTPEYAAWRSLRESEDSRYIGLAMPRFLARLPYGAKTSP
                     VEEFNFEEETHGGEHGTYSWANAAYAMAVNINRSFKMYGWCSRIRGIESGGAVEGLPT
                     HTFPTDEGGVAMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPFE
                     YDDPDATANANLSARLPYLFATCRFAHYLKCIVRDKVGSFKERDDMAKWLNKWIMNYV
                     DGDPANSSEVTKSQKPLAAAEVVVDEIPGNPGYYSSKFFLRPHYQLEGLTVSLRLVSK
                     LPSAKAA"
     gene            1446..1916
                     /locus_tag="VF308_00430"
     CDS             1446..1916
                     /locus_tag="VF308_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007830926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
                     /protein_id="HEX7435148.1"
                     /translation="MSSDASIKFDGVDGESVKPKGEIEVLSWNWGVSQPSGPAGGGSG
                     KGKAIPGDFHFTHLYDKASPVLAKKCVSGTHFKDAKLTARKAGEGQQDFLVVTLKEVF
                     ITSVMPGGSTGGDILEQVTCSYKDVEFAYKPQDDKGALGGEVKFGWDVAKTETR"
     gene            1986..2495
                     /locus_tag="VF308_00435"
     CDS             1986..2495
                     /locus_tag="VF308_00435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein"
                     /protein_id="HEX7435149.1"
                     /translation="MAFVTTFVGAVSKKGSNAFNVDFSVGPGVRGNQPADIMLVQALF
                     RIAHFEVSAPLPPPPGETGIAVDGKLGPKTIRFILNGQRLAKASGLKVRLDGIFDPFR
                     SQGEFSKIAKVRYVLELLNDACFNLCDNDGINNFVALQVRDDIPAALVADLNAPRRDV
                     ARQYEREQG"
     gene            2513..3028
                     /locus_tag="VF308_00440"
     CDS             2513..3028
                     /locus_tag="VF308_00440"
                     /inference="COORDINATES: protein motif:HMM:TIGR03344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
                     /protein_id="HEX7435150.1"
                     /translation="MGVPLPGDSTAASGADVYLSVRTKRAGDLKGEANSKGHENAILA
                     HGFQFGVSAASAIGSGQATARRQYKHLIVTKRLDSASTSLMSALATNDEVKELKLALR
                     KPGDGQDDFFTITLAGARVVGVDLDCDASGETVERVSFAFTKIDVEYRVQSADGVLGG
                     SSTFTDELLSA"
     gene            3036..3848
                     /locus_tag="VF308_00445"
     CDS             3036..3848
                     /locus_tag="VF308_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007580067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system accessory protein TagJ"
                     /protein_id="HEX7435151.1"
                     /translation="MATSASPEELIAAGHPADALKRLQGRVREKPQDAKLRTFLFQLL
                     CVLGQWDRAQAQLELCGQLDHATLAMVNTYREALKCELVREAVFAGKTTPMIFGQPQA
                     WVASLVEALQADARGEVDLATRLRADALLAAPASAGTLDGTAFEWIADADSRLGPVLE
                     AVVNGRYVWVPFSALAKISIEAPADLRDLVWAPAHLTLANGGDTVALVPTRYAGSGAE
                     ADGALQLSRKTEWLAIGADQYRGLGQRVITTSGAELGLLEVREIALQAPAEG"
     gene            3858..4379
                     /gene="tssE"
                     /locus_tag="VF308_00450"
     CDS             3858..4379
                     /gene="tssE"
                     /locus_tag="VF308_00450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007833351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssE"
                     /protein_id="HEX7435152.1"
                     /translation="MAVDVRNRLQPALLDRLTDDQPDDRQESESHRVMSKTQLRQAVL
                     RDLGALFNSVQPLGDEAEPYPLLAESVLNFGLPSLSGQLASKLDVSVLEGAIRQAILR
                     FEPRILPDTLHVTALEASNVLDTHNVIEFEIRGHLWSQPVPLEILLRTQLDLEAGQIE
                     VRDVAGVVPSQAR"
     gene            4397..>5429
                     /gene="tssF"
                     /locus_tag="VF308_00455"
     CDS             4397..>5429
                     /gene="tssF"
                     /locus_tag="VF308_00455"
                     /inference="COORDINATES: protein motif:HMM:NF017733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HEX7435153.1"
                     /translation="MDPRLLRLYSDELSHLREVGAEFAREFPKIAARLGVEGMEVTDP
                     YVERLLEGFAFLTARVQLKLEAEQPRLIAHLLEATYPNFLAPLPSMMVARFGVDPADP
                     NLVKGYAVPRGSALLSEVARGQDTHCQFTTAHEVTLWPIELASVQYFSFAPDLAAAKL
                     PQLLGTRGGLRIRLRSAGGVKFGQLGLDRLALYISAGDDVAFRLHELVLGSASGTLVR
                     GGESAGAVDLAQWRGSESVRALGFGADEALLPESLRAFSGYRLVQEVAAMPQRLLFFE
                     IGDLAERLGRVASDEVEIVVALRRGDAGLEAVVDASSLALFCTPAINLFEKRLDRIQV
                     GTGSWEYHAV"
BASE COUNT          916 a         1888 c         1783 g          842 t
ORIGIN      
        1 cgagcaggcg gtcctcacgc tcgcgcagca ggcgctgtcg cagaccaacc tgatcggcag
       61 cgacgtcgtc atgtcgatcg aggcgatgat cgccgagctc gacaagcgcc tgtcgacgca
      121 ggtcaacgcg atcctccacc acgaggactt ccagaagctc gaaagcgcct ggcgcggcct
      181 gcactatctc gtcaacaaca ccgaaaccga cgagatgctg aagatccggg tgatgaacat
      241 ctcgaagctc gacctcggca agacgctcaa gcgctacaag ggcacgtcgt gggaccagag
      301 cccgctcttc aagaaggtct acgaggagga gtacgggcag ttcggcggcg agccgttcgg
      361 ctgcatcatg ggcgactacc acttcgacca cagcccgccc gacgtcgagc tgctcggcga
      421 gatgagcaag gtctccgcgg cggcccacac gccgttcatc gccggtgcca gccccacgct
      481 gatgcagatg ggatcgtggc aggagctcgc caatccgcgc gacctgacga agatcttcac
      541 gacgccggag tacgccgcct ggcggtcgct gcgcgagtcg gaggactcgc gctacatcgg
      601 tctggcgatg ccgcgcttcc tcgcgcgact cccctacggc gccaagacga gcccggtcga
      661 ggagttcaat ttcgaggagg agacgcacgg cggcgagcac ggcacctatt cgtgggccaa
      721 cgcggcctac gcgatggccg tcaacatcaa ccgatcgttc aagatgtacg gctggtgctc
      781 gcggatccgc ggcatcgagt cgggcggcgc cgtcgagggc ctgccgacgc acaccttccc
      841 gaccgacgaa ggcggcgtgg cgatgaaatg ccccaccgag atcgcgatca gcgaccggcg
      901 cgaggccgag ctcgccaaga acggcttcat gccgctcgtg caccgcaaga actccgactt
      961 cgcggccttc atcggcgcgc agtcgctgca gaagcccttc gagtacgacg accccgacgc
     1021 gactgccaac gccaacctgt cggcccggct gccctacctg ttcgcgacct gccgcttcgc
     1081 gcactacctg aagtgcatcg tccgcgacaa ggtcggctcg ttcaaggagc gcgacgacat
     1141 ggccaagtgg ctgaacaagt ggatcatgaa ctacgtcgac ggcgacccgg caaactcgtc
     1201 cgaggtgacc aagtctcaga agccgctcgc cgccgccgaa gtcgtcgtcg acgagattcc
     1261 gggcaacccc ggctactact cgtccaagtt cttcctgagg ccgcactatc aactcgaagg
     1321 gttgacggtc tcgctacgcc tggtctcgaa gcttccgtca gcgaaggcgg cctgacggcc
     1381 atccacggcc gcctcgcttc ggcctgcgcc gaaggcggcc atttcaaacc aagaggagcg
     1441 ttctcatgag cagcgatgca agcatcaagt tcgacggtgt cgacggcgaa tcagtgaagc
     1501 ccaagggcga gatcgaggtg ctgtcctgga actggggcgt cagccagcct tccggtcccg
     1561 ccggtggcgg ctccggcaag ggcaaggcga tcccgggcga cttccacttc acgcacctgt
     1621 acgacaaggc ttctccggtg ctcgccaaga agtgcgtgtc cggcactcac ttcaaggacg
     1681 cgaagctgac ggcgcgcaag gccggcgaag gccagcagga cttcctcgtc gtgaccctga
     1741 aggaagtatt catcaccagc gtcatgcccg gtggcagcac tggcggcgac atcctcgagc
     1801 aggtgacctg cagctacaag gacgtcgagt tcgcctacaa gccgcaggac gacaagggcg
     1861 cgctcggcgg cgaagtgaag ttcggctggg atgtcgcgaa gaccgagacg cgctgagcgc
     1921 ggcgcgtcga tccgcttcgc gcgggcgatt cctctaggca gaaggctatt ccagcaggag
     1981 gcgatatggc gttcgtgacc acctttgtcg gggcagtgag caagaaggga agcaacgcct
     2041 tcaacgtcga cttctcggtc gggccgggcg tgcgcggcaa tcaaccggcc gacatcatgc
     2101 tggtccaggc gctgttccgg atcgcccact tcgaagtcag cgcgccgcta ccgccgccgc
     2161 ctggcgaaac gggaattgct gtcgacggca agctcggtcc gaagacgatc cggttcatcc
     2221 tgaacggtca gcgtttggca aaagcctccg gactcaaagt gcggctcgac ggcatcttcg
     2281 atccgttccg gtcgcaagga gagttctcga aaatcgccaa ggttcgctac gtgctggagc
     2341 tgttgaacga cgcgtgcttc aacctctgcg acaacgacgg catcaacaac ttcgtcgctt
     2401 tgcaggttcg cgatgacatt ccggccgcgc tggtcgccga cctgaacgcg ccgcggcgcg
     2461 acgtggcccg gcagtacgag cgcgagcaag gctagcgagg cggcagcagc acatgggcgt
     2521 tccgcttccc ggcgactcca ccgcagcgag cggtgccgat gtctatctga gcgttcgcac
     2581 caagcgcgcc ggcgacttga agggcgaagc caacagcaag gggcacgaga acgcgatcct
     2641 cgcccacggg tttcagttcg gcgtttcggc ggcttcggcg atcggctcgg gacaggcgac
     2701 ggcgcgaagg caatacaagc acctgatcgt cacgaagcgt ctcgacagcg cgtcgacgtc
     2761 gctgatgagc gcgctcgcca ccaacgacga ggtcaaggag ctgaagctcg cgctgcgcaa
     2821 gcccggcgac ggccaggacg acttcttcac gatcacgctc gccggcgctc gggtcgtcgg
     2881 cgtcgatctc gattgcgacg cgagcggtga aacggtcgag cgggtctcgt tcgcgttcac
     2941 caagatcgat gtcgaatacc gcgtccagag tgccgacggc gtcctgggcg ggtcgagcac
     3001 gttcacggac gagcttctgt ccgcctgagg cccgggtggc aacttccgct tcgcccgaag
     3061 agctgatcgc cgccggccat cccgccgatg cgctgaagcg gctccaggga cgcgttcgcg
     3121 agaagccgca ggacgccaag ctgcgcacct tcctgttcca gctgctgtgc gtcctcggcc
     3181 agtgggaccg cgcccaggcg cagctcgagc tctgcggcca gctcgaccac gcgacgctgg
     3241 cgatggtcaa tacctaccgc gaagccttga agtgcgagct cgtgcgcgag gcggtcttcg
     3301 ccggcaagac gacgcccatg atcttcggcc agccgcaggc ctgggtcgcg tcgctggtcg
     3361 aggcgctgca ggccgacgcg cgcggcgaag tcgacctggc gacgcggctt cgcgccgacg
     3421 cgctcctcgc cgcgccggcc agcgccggca cgctcgacgg cacggcgttc gaatggatcg
     3481 ccgacgccga ttcgcgcctc ggtccggtcc tcgaggcggt cgtcaacggc cgctacgtct
     3541 gggtgccgtt cagcgcgctc gccaagatca gcatcgaggc gccggcggat ctgcgcgacc
     3601 tcgtctgggc gcccgcccac ctcacgctcg ccaacggcgg cgacaccgtc gccctggtgc
     3661 cgacccgcta tgccggctcc ggcgccgagg ccgacggcgc gttgcagctc tcgcgcaaga
     3721 ccgagtggct cgctatcggc gccgatcagt atcgcggcct gggccagcgg gtgatcacga
     3781 cgagcggggc ggagctgggt cttctggaag tgcgcgagat cgccctgcaa gcgcccgccg
     3841 aaggctgacc gcctgccatg gccgtcgatg tgcgcaatcg cctgcagccg gcgctgctcg
     3901 accggctgac cgacgaccag cccgacgatc gccaggagtc cgagtcgcat cgcgtgatgt
     3961 cgaagacgca gctgcggcag gccgtcctgc gcgacctcgg cgcgctgttc aactcggtgc
     4021 aacccctcgg cgacgaagcc gagccttatc ccttgctcgc cgagagcgtg ctgaacttcg
     4081 gcctgccgtc gctctcgggg caactcgcct ccaagctcga cgtcagcgtt ctcgaaggcg
     4141 ccatccgcca ggcgatcctg cgcttcgagc cgcgcatcct gcccgacacg ctgcacgtca
     4201 ccgcgctcga ggcgtcgaac gtcctcgaca cgcacaacgt catcgagttc gagattcgcg
     4261 gccacctctg gtcgcagccg gtgccgctcg agatcctgtt gcgcacccag ctcgatctcg
     4321 aggcgggcca gatcgaggtt cgcgacgtcg ccggcgtggt gccctcgcag gcgcgctagc
     4381 gacaccgacg agccccatgg acccgcgcct cctgcgcctc tacagcgacg agctgtcgca
     4441 cctgcgcgag gtgggcgcgg agttcgcgcg cgaatttccg aagatcgcgg cgcgtctcgg
     4501 cgtcgagggc atggaggtca ccgacccgta cgtcgagcgc ctgctcgaag gcttcgcctt
     4561 cctgaccgcg cgcgtccagc tcaagctcga ggccgagcag ccgcgcctga tcgcgcacct
     4621 gctcgaggcg acgtatccga acttcctcgc gccgctgccg tcgatgatgg tcgcccgctt
     4681 cggcgtcgac ccggccgacc cgaacctggt caagggctat gccgtgccgc gcggcagcgc
     4741 gctgctctcc gaggtcgcgc gcggccagga cacgcactgc cagttcacca cggcgcacga
     4801 ggtgacgctc tggccgatcg agctggcgag cgtccagtac ttcagcttcg ctcccgacct
     4861 cgcggcagcg aagctgccgc agctgctcgg cacgcgcggc ggcctgcgca tccggctgcg
     4921 ctcggccggc ggcgtcaagt tcggccagct cggcctcgac cggctcgcgc tctacatcag
     4981 cgctggcgac gacgtcgcgt ttcgcctcca cgagctcgtc ctcggctcgg cgagcgggac
     5041 gctcgtgcgc ggcggcgaat ccgcgggtgc cgtcgacctg gcgcaatggc gcggcagcga
     5101 gagcgtgcgg gcgctcggct tcggcgccga cgaggcgctc ctgcccgaat cgctgcgcgc
     5161 cttctccggc tatcgcctcg tccaggaagt cgcggcgatg ccgcagcggc tgctcttctt
     5221 cgagatcggc gatctcgccg agcgcctcgg tcgcgtcgcc agcgacgagg tcgagatcgt
     5281 cgtcgcgctg cgccgcggcg acgccgggct cgaggcggtc gtcgatgcga gcagcctcgc
     5341 gctcttctgc acgccggcga tcaacctgtt cgagaagcgc ctcgaccgca tccaggtcgg
     5401 caccggatcg tgggagtacc acgccgtcc
//
LOCUS       DASVHM010000024         2458 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_578713, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000024 DASVHM010000000
VERSION     DASVHM010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578713"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..519)
                     /locus_tag="VF308_00460"
     CDS             complement(<1..519)
                     /locus_tag="VF308_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HEX7435154.1"
                     /translation="MSLDPDWLVPAWNAAGVGALMTTRQGGFSAAPYASMNLQQGGGD
                     APEAVARNRARLAAAIGATPVFLNQIHGARVVRIGAADAAIDAPTHAADASVTTEPGV
                     ACAIQVADCLPVLFAAPGGRAVGAAHAGWRGLAAGMLEATVGALCEAGDCAPDELQAW
                     LGPSIGPARFQVG"
     gene            complement(516..1154)
                     /gene="maiA"
                     /locus_tag="VF308_00465"
     CDS             complement(516..1154)
                     /gene="maiA"
                     /locus_tag="VF308_00465"
                     /EC_number="5.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010930265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016034 - maleylacetoacetate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetoacetate isomerase"
                     /protein_id="HEX7435155.1"
                     /translation="MQLYNYFRSSASYRVRIALALKGLAYDYVPVRIVRNEQFDGPFD
                     ALAPAHLVPVLKDGDDVLTQSLAIIEYLDETHPQPPLLPGDAVARARIRALALDIACE
                     IHPLNNLRVLRYLVKEMEVSEDEKNRWYRHWVETGLEVVERQIARPGGSGRFCHGDAP
                     TLADCVLVPQIFNAQRLECRTEHVPTVMRIFAECMRLDAFAKTQPSTCPDAM"
     gene            complement(1162..1869)
                     /locus_tag="VF308_00470"
     CDS             complement(1162..1869)
                     /locus_tag="VF308_00470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010458932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEX7435156.1"
                     /translation="MKHVLTPPAVATVPVAGGAAGAVFPVHRIYCVGRNYVEHAVEMG
                     FTGREPPFFFLKPADAVLPVAEGTIGRMHYPSLTKSLHHEVELVVAIGKGGRNIAAAD
                     AGQHIWGYAVGLDMTRRDLQGEAKKLGRPWDIGKAFDESAPIGPLRKAADCTVGAATA
                     IVLEVNGAVRQRSVIGKLIWSIPEIIEHLSAAWELAPGDLIFTGTPEGVAAVEVGDTL
                     KARVDGVGSLQVQIVAR"
     gene            1964..>2458
                     /locus_tag="VF308_00475"
     CDS             1964..>2458
                     /locus_tag="VF308_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012747148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX7435157.1"
                     /translation="MLIPRSIKHCKTCGGAVRYEVPADDNRERATCSACGTIHYENPL
                     NVVGTVPIWGDEVLLCRRNIEPRYGLWTLPAGFMELGETTAEGALRETVEEAGARIEL
                     QGLFTVLNVARVGQLHLYYRARLLDAEFAPGPETIEARLFGEAAIPWEELAFRTVRET
                     LRCFF"
BASE COUNT          386 a          845 c          855 g          372 t
ORIGIN      
        1 accgacctga aagcgcgccg ggccgatcga ggggccgagc cacgcctgga gctcgtcagg
       61 ggcacagtcg ccggcctcgc acagtgcgcc gaccgtcgct tcgagcatgc ccgccgccaa
      121 cccgcgccaa cctgcatgcg ccgcgccgac ggcgcggccg cccggcgccg cgaagagaac
      181 cgggaggcag tcggcgacct ggatggcgca ggccacgccc ggttcggtcg tgacgctcgc
      241 gtcggcggcg tgagtcggcg cgtcgatggc cgcatcggcc gcgccgatgc gcacgacacg
      301 cgcgccatgg atctgattca ggaacaccgg ggtcgcaccg atcgcggcgg cgagccgggc
      361 ccggttccgc gcgacggcct cgggcgcgtc gccgccccct tgctgcaggt tcatggaggc
      421 gtacggcgcg gcactgaagc cgccctggcg cgtcgtcatc agcgcgccga cgccggccgc
      481 gttccaggcg gggacgagcc agtcgggatc gaggctcaca tcgcgtcggg acaagtcgat
      541 ggctgcgtct tcgcaaatgc gtcgagccgc atgcattcgg cgaagatccg catcaccgtg
      601 ggcacgtgct cggtgcggca ttcgaggcgc tgggcgttga agatctgcgg cacgagcacg
      661 cagtccgcga gggtcggcgc gtcgccgtgg cagaaacgcc ccgacccgcc ggggcgggcg
      721 atctggcgct ccacgacttc gaggccggtt tcgacccaat gccggtacca gcggttcttc
      781 tcgtcttcgc tgacctccat ctccttgacg aggtagcgca gcacgcgcag attgttgagc
      841 ggatggatct cgcaggcgat gtcgagtgcc agcgcgcgga tgcgcgcgcg cgcgaccgca
      901 tcgccgggca acaagggcgg ctgcggatgg gtttcgtcga ggtattcgat gatcgcgagc
      961 gactgcgtca acacgtcgtc gccgtccttg agcaccggca cgagatgcgc gggggcgagg
     1021 gcatcgaacg gcccgtcgaa ctgctcgttg cggacgatcc gcaccggcac gtagtcgtag
     1081 gccaggccct ttagcgcgag tgcgatgcga acgcgatacg acgccgacga gcggaagtag
     1141 ttgtagagct gcatgggagc ctcagcgcgc gacgatctgc acttgcagcg acccgacgcc
     1201 gtcgacgcgt gccttcagcg tatcgcccac ttcgaccgcg gccacgcctt cgggcgtgcc
     1261 ggtgaagatc aggtcgccgg gcgcgagctc ccaggccgcc gacaggtgct cgatgatctc
     1321 gggaatgctc cagatcagct tgccgatcac gctgcgctgg cgcaccgcgc cgttgacctc
     1381 gagcacgatc gccgtcgccg cgccgaccgt gcaatcggcg gccttgcgca gcggcccgat
     1441 cggcgccgat tcgtcgaagg ccttgccgat gtcccacggg cggccgagct tcttcgcctc
     1501 gccctgcagg tcccgccgcg tcatgtcgag gccgaccgcg taaccccaga tgtgctgccc
     1561 tgcatcggcg gcggcgatgt tgcgcccgcc cttgccgatc gcgacgacga gttcgacctc
     1621 gtggtgcagg ctcttcgtca ggctcgggta atgcatgcgg ccgatcgtgc cctcggcgac
     1681 cggcagcacc gcgtcggccg gcttcaggaa gaagaacggc ggttcgcggc cggtgaagcc
     1741 catttcgacc gcgtgctcga catagttgcg gccgacgcaa tagatgcgat ggaccggaaa
     1801 caccgcaccg gcggcgccgc ccgcgaccgg gacggtggcg acggcgggcg gggtcaggac
     1861 gtgcttcatc gggagattcc ttaaggaggc ggtgcgtgca tgcgactggc ggaatgatgc
     1921 cacgcgcgcc gagtcggatc gatgccgcaa gtacactgcc gccatgctca ttccgcgcag
     1981 catcaagcat tgcaagacct gcggcggcgc ggtgcgttac gaggtccccg ccgacgacaa
     2041 ccgcgagcgc gccacctgca gcgcgtgcgg cacgatccac tacgagaatc cgctcaacgt
     2101 cgtcggcacc gtgccaatct ggggcgacga agtgctgctc tgccggcgca acatcgagcc
     2161 gcgctatggc ctatggacgc tgcccgccgg cttcatggaa ctcggcgaaa cgacggccga
     2221 aggcgcgctg cgcgaaaccg tcgaggaagc cggcgcgcgc atcgaattgc agggcctctt
     2281 cacggtgctc aatgtggctc gcgtcggcca actgcacctt tattaccgtg cccggcttct
     2341 cgacgccgag ttcgcgcccg ggcccgagac gatcgaagcg cggctgttcg gcgaagccgc
     2401 gatcccgtgg gaagaactgg cttttcgcac cgtgcgcgaa accctgcgct gcttcttc
//
LOCUS       DASVHM010000025         1671 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_578729, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000025 DASVHM010000000
VERSION     DASVHM010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578729"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..145
                     /locus_tag="VF308_00480"
     CDS             <1..145
                     /locus_tag="VF308_00480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012416684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein"
                     /protein_id="HEX7435158.1"
                     /translation="CAFAPRCTYATERCRREAPALEAQGIDHEVACFEVARVAATPLG
                     TTP"
     gene            142..1182
                     /locus_tag="VF308_00485"
     CDS             142..1182
                     /locus_tag="VF308_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010103951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HEX7435159.1"
                     /translation="MNGAREAMKPEGASAPRAPLLEVRDLEKHYAAPRRWFGKAHPAI
                     QAVDGVSFTLAHGETLALVGESGCGKTTTGKSVLRLIEPTAGSVRLEGEELLGLDAGA
                     MRQHRRHLQIIFQDPYASLNPRLKAGEIVAEPMRNFPAQGSRSAAERRERAAWLFSKV
                     GLRPEALERYPHEFSGGQRQRLGIARALALQPKLIVCDEPVSALDVSVQAQVINLLTD
                     LQAEFGIAYLFVAHDLAVVRHISHRVAVMYLGHIVEIADRDTLFAAPRHPYTEILLSA
                     VPVPDPRRHAQRILLAGDPPSAANPPSGCRFHTRCPLAQPICREQRPDLGNRMSTPPD
                     DGAEHLVACHFR"
     gene            1205..>1671
                     /locus_tag="VF308_00490"
     CDS             1205..>1671
                     /locus_tag="VF308_00490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010103950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX7435160.1"
                     /translation="MPDTPSEFDLLIRGGTVIDGTRAPRYVADVGIAGGRIVAIGDLA
                     GRSAKRTLDATGRIVAPGFIDSHTHDDQALLSQPDMSFKVSQGVTTVVAGNCGISIAP
                     LRADTPLPSPLDLLDASARARFASFKDYFAELERDPPSVNVAALVGHSTLRVMT"
BASE COUNT          248 a          625 c          552 g          246 t
ORIGIN      
        1 ctgcgcgttc gcgccgcgct gcacctacgc gaccgagcgc tgccggcgcg aggcgccggc
       61 gctcgaggcg cagggcatcg accatgaggt cgcctgcttc gaagtggcgc gcgtcgcggc
      121 cacgccgctc ggcacgacgc catgaacggc gcgcgcgaag cgatgaagcc cgagggcgcc
      181 agcgcgccgc gagcgccact gctcgaagtg cgcgacctcg agaagcacta cgccgcgccg
      241 cggcgctggt tcggcaaggc gcaccctgcg atccaggcgg tcgacggtgt ctcgttcact
      301 cttgcgcacg gcgagaccct ggcgctcgtc ggcgaatcgg gttgcggcaa gacgactacg
      361 ggcaaatcgg tgctgcgcct gatcgagccg acggccggtt cggtgcgcct tgaaggcgag
      421 gagctgctcg ggctcgatgc cggcgcgatg cgccagcacc ggcgccacct gcagatcata
      481 ttccaggatc cgtacgcatc gctgaatccg cgcctcaagg ccggcgagat cgtcgccgag
      541 ccgatgcgca acttccccgc gcagggctcg cgcagcgccg ccgagcggcg cgagcgcgcg
      601 gcctggctgt tttcgaaggt ggggttgcgg cccgaggcgc tcgagcgcta cccgcacgaa
      661 ttctcgggcg gccagcgcca gcggctgggc atcgcccgcg ccctcgcgtt gcagccgaag
      721 ctgatcgtct gcgacgagcc ggtctccgcg ctcgatgtct cggtgcaggc ccaggtgatc
      781 aacctgctga ccgacctgca ggccgagttc ggcatcgcat acctgttcgt cgcccacgac
      841 ctcgccgtcg tgcgccacat cagccaccgg gtcgcggtga tgtacctcgg ccatatcgtc
      901 gagatcgcgg accgcgacac gctcttcgcg gcgccgcgcc atccgtacac cgagatcctg
      961 ctgtcggccg tgccggtgcc cgacccgcgc cgccatgcgc agcggatcct gctcgccggc
     1021 gatccgccga gcgcggcgaa tccgccgagc ggctgccggt ttcacacgcg ctgcccgctg
     1081 gcgcagccga tctgccgcga acagagaccc gatctcggca accgcatgtc aaccccaccc
     1141 gatgacgggg ccgagcacct ggtcgcgtgc cacttccgct aacgcttgca ccctggagat
     1201 ggaaatgccc gacacccctt ccgaattcga tcttctgatc cgcggcggca ccgtcatcga
     1261 tggcacccgc gcaccacgct acgtcgccga cgtggggatc gccggcggcc gcatcgtcgc
     1321 gatcggcgac ctggcaggcc gtagtgcgaa gcgcacgctc gacgcgaccg gccgcatcgt
     1381 cgcgcccggc ttcatcgact cgcataccca cgacgaccag gcgctgctct cgcaacccga
     1441 catgagcttc aaggtctcgc agggcgtgac gacggtcgtt gccggcaact gcggcatcag
     1501 catcgcgccg ctgcgcgccg acacgccgct gccttcgccg ctcgacctgc tcgatgcgag
     1561 cgcgcgtgcg cgcttcgcga gcttcaagga ctacttcgcc gaactcgaac gcgacccccc
     1621 ttcggtgaac gtggccgcgc tggtcgggca ctcgaccttg cgcgtgatga c
//
LOCUS       DASVHM010000026         2936 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_145958, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000026 DASVHM010000000
VERSION     DASVHM010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145958"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VF308_00495"
     CDS             <1..218
                     /locus_tag="VF308_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015013233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEX7435161.1"
                     /translation="FLHHMVRNIMGCLVVVGSGARSPEWLAEVLGARDRSRAAPTFAA
                     DGLYFAGPYYDAGHAIPERSAAFDWLS"
     gene            226..879
                     /locus_tag="VF308_00500"
     CDS             226..879
                     /locus_tag="VF308_00500"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011517058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004640 - phosphoribosylanthranilate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEX7435162.1"
                     /translation="MARNQRTRIKICGVSREADVEAAVESGADAIGLVFYAPSPRHVT
                     LARAVELARRLPPFVTPVGLFVNAAVEEIGAALAAIPQLLPQFHGEETPAYCARFARP
                     FLKAARMAPGFDLLDFARHFCDAQALLLDAHVEAYGGGGKVFDWSLVPSDVSRPVVLS
                     GGLHAGNVVQGIQQVRPWAVDVSSGVESARGIKDGAAIRRFCEAVREADARLAAAVA"
     gene            899..2164
                     /gene="trpB"
                     /locus_tag="VF308_00505"
     CDS             899..2164
                     /gene="trpB"
                     /locus_tag="VF308_00505"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019575001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEX7435163.1"
                     /translation="MLNYQQPDARGHFGPYGGSFVAETLVHALDELKLSYAEAQRDPA
                     FMAEFHYELAHFVGRPSPIYHAARMSRELGGAQIYLKREDLNHTGAHKINNTIGQAML
                     ARRMGKPRVIAETGAGQHGVATATICARYGLECVVYMGSEDVKRQSPNVYRMNLLGAT
                     VVPVESGSKTLKDALNEALRDWVTHVENTFYIIGTVAGPHPYPTMVRDFQRVIGDECL
                     TQMPEMIGRQPDAVIACVGGGSNAMGIFYPYIGHAGTRLIGVEAAGQGLETGRHAASL
                     SAGSPGVLHGNRTYLLQDANGQILETHSISAGLDYPGVGPEHAWLKDIGRAEYVAITD
                     DEALAAFHHLCRTEGIIPALESSHAVAYAMKLAPRLRPDQHLLVNLSGRGDKDIGTVA
                     DLSGAEFFCRPSCKGQSVKGATTGMKGPR"
     gene            2161..>2936
                     /gene="trpA"
                     /locus_tag="VF308_00510"
     CDS             2161..>2936
                     /gene="trpA"
                     /locus_tag="VF308_00510"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEX7435164.1"
                     /translation="MSRIAATFAQLRERHRKALIPYVTAGDPYADATVEIMHAMAAAG
                     ADIIELGVPFSDPMADGPVIQKAGERALARGIGMAQVLDMVRAFRAGDERTPVVLMGY
                     ANPVERYGVDRFATDAAEAGVDGVLVVDYPPEECEDFARLLKSHRIDPIFLLAPTSTE
                     ARIQEVGRIATGYVYYVSLKGVTGAGHLDVAGVAEAVPRIRAHVQVPVGVGFGIRDAP
                     TARAVADVCDAVVIGSALVQLLESAPRDNAAAVAAGFIAGV"
BASE COUNT          452 a          997 c          987 g          500 t
ORIGIN      
        1 cgttcctgca tcacatggtg cgcaacatca tgggctgcct cgtcgtcgtg ggcagcggcg
       61 cgcgcagccc cgagtggctc gccgaggtcc tcggcgcgcg cgaccgcagc cgggccgcgc
      121 cgaccttcgc agccgacggc ctttatttcg ccggcccgta ctacgatgcg ggccatgcta
      181 ttccggaacg tagcgcagcc ttcgactggc tttcctgacc gctggatggc gaggaaccag
      241 cgcacgcgga tcaagatctg cggcgtcagc cgcgaggccg atgtcgaggc cgcggtggaa
      301 tcgggtgccg atgcgatcgg cctcgtcttc tacgcgccga gcccgcgcca tgtcacgctc
      361 gcgcgcgccg tcgagctcgc gcggcggctg ccgccctttg tcacgccggt ggggctcttc
      421 gtcaacgccg cggtcgagga gatcggcgcc gcgctcgcgg cgatcccgca gttgctgccg
      481 cagtttcatg gcgaggagac gccggcctat tgcgcacgct tcgcccgccc ctttctcaag
      541 gctgctcgga tggcgcccgg tttcgatttg ctagactttg cccgtcactt ctgcgacgcc
      601 caagccctgt tgctcgacgc ccatgtcgag gcctatggcg ggggcggaaa ggtcttcgat
      661 tggtcgctcg ttccttccga cgtctcccgt ccggtcgttt tgtctggtgg gttgcatgcc
      721 ggaaatgtcg tacaaggcat ccagcaggtc cggccctggg ccgttgacgt gagttccggc
      781 gtcgaatctg cgcgcggcat caaggatggc gcggcgattc gccggttctg cgaggcagtg
      841 cgcgaagccg atgcccggct cgctgcggcc gttgcctgac atccttctcc tctcagccat
      901 gttgaactat cagcaacccg atgcgcgggg gcacttcggc ccctatggcg gcagtttcgt
      961 cgccgagacc ctggtgcacg ccctcgacga actcaagctc agctacgccg aagcgcagcg
     1021 agatccggcg ttcatggccg agttccatta cgaactcgcg catttcgtag gccgtccgag
     1081 cccgatctac cacgcggcgc ggatgagccg cgaactcggt ggcgcgcaga tctacctcaa
     1141 acgcgaagac ctgaaccaca ccggcgccca caagatcaac aacaccatcg gccaggcaat
     1201 gcttgcgcgc cgcatgggaa agccgagggt catcgccgag accggggcgg gccagcacgg
     1261 cgtcgcgact gcgacgatct gcgcccgtta cggcctcgaa tgcgtggtct acatgggcag
     1321 cgaggacgtg aagcgccagt cgccgaacgt ctaccgcatg aatctgctcg gcgcgaccgt
     1381 ggtcccggtg gagagcggct cgaagacgct gaaagacgcg ctcaacgaag ccctgcgcga
     1441 ctgggtcacc catgtcgaga acacgttcta catcatcggc accgtggccg gtccgcaccc
     1501 ctatccgacg atggtgcgcg acttccagcg cgtgatcggc gacgagtgcc tcacccagat
     1561 gcccgagatg atcggccgcc agcccgatgc ggtgatcgcc tgcgtcggcg gcggcagcaa
     1621 cgcgatgggc atcttctatc cgtacatcgg gcatgccgga acgcgcctta tcggcgtcga
     1681 ggcggccggg caggggctcg agaccggccg gcatgccgcg tcgctctcgg ccggatcccc
     1741 gggtgtgctg cacggcaatc gcacttactt gctgcaggac gcgaatgggc agatcctcga
     1801 gacgcactcg atctcggcgg gcctcgacta tccgggcgtc gggcccgagc acgcatggct
     1861 gaaggacatc ggccgcgccg aatacgtcgc catcaccgac gacgaagcgc tcgcggcgtt
     1921 ccaccatctc tgccgcaccg agggcatcat tccggcgctc gaatcgagcc acgcggtcgc
     1981 ctatgcgatg aaactcgcgc cgaggctgcg ccccgatcag catctgctcg tcaacctgtc
     2041 cgggcgcggc gacaaggaca tcggcaccgt cgccgatctt tccggcgccg aattcttctg
     2101 ccggccgtcg tgcaaggggc agagcgtcaa gggcgcgacg accggcatga agggtccgag
     2161 gtgagccgca tcgccgcgac cttcgctcag ctgcgagagc ggcatcgcaa ggccctgatc
     2221 ccctacgtga cggcggggga tccgtatgcc gatgcgacgg tcgagatcat gcatgcgatg
     2281 gcggcggccg gcgccgacat catcgaactc ggtgtgccgt tttccgatcc gatggccgac
     2341 ggcccggtga tccagaaggc gggtgaacgc gccctggcgc gcggcatcgg catggcgcag
     2401 gtgctcgaca tggtgcgcgc ctttcgtgcc ggcgacgagc gcacgccggt cgtgctgatg
     2461 ggctatgcca atccggtcga aaggtacggt gtcgaccgct ttgccaccga tgcggccgag
     2521 gcgggggtcg acggggtgct ggtggtcgac tacccgccgg aggagtgcga agacttcgcg
     2581 cggctgctga agtcgcatcg aatcgatccg atcttcctgc tcgcgccgac ctccaccgaa
     2641 gcgcgcatcc aggaggtcgg tcgcatcgcc accggctatg tctactacgt gtcgctcaag
     2701 ggcgtgaccg gcgctgggca cctcgatgtc gccggcgtgg ccgaggcggt gccgcgcatc
     2761 agggcgcacg tgcaggtgcc cgtgggggtc ggcttcggca tccgcgacgc gcccaccgcg
     2821 cgtgccgtgg ccgacgtctg cgatgccgtc gtgatcggtt cggcgctggt gcaattgctc
     2881 gaatccgcgc cgcgcgacaa tgcggctgcc gtggccgccg gtttcatcgc cggcgt
//
LOCUS       DASVHM010000027         4955 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_145987, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000027 DASVHM010000000
VERSION     DASVHM010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4955
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145987"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1030)
                     /locus_tag="VF308_00515"
     CDS             complement(<1..1030)
                     /locus_tag="VF308_00515"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015013915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7435165.1"
                     /translation="MSSSLAVALPGIPDPQALRHQLARAERRRKLRAFSLTLPLLLFL
                     MLTFLVPIATLLKRAVENPEVANALPRTVAALQGWNREGTPEADAFAAIAKDLSALPD
                     SSDAGALARRLNSEVPGARSLVMNTFKALPLEGPGTPAAMKAGLLALDERWDEAKYWR
                     AIAKNGSRWTPDYLLTSVDLRRDVHGAIERVDPEQRVFARILARTFEISAIVTLWALL
                     LGYPLAYWLSTLSARQANVLMILVLVPFWTSILVRVAAWIVLLQSEGLVNHALIGLHL
                     IERPLALLFNRTGVIIAMVHILLPFMILPLYSVMKSVPPTYLRAAVSLGSAPLAGFFR
                     VYVPQTYPG"
     gene            complement(1090..2118)
                     /locus_tag="VF308_00520"
     CDS             complement(1090..2118)
                     /locus_tag="VF308_00520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010458579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435166.1"
                     /translation="MNKSILATALVAAISLPALAQQQITVVNFGGANANAQKKAYYEP
                     FEKAGTKVVSVEYNGEQAKIKAMVETKKVTWDVVEVESPDVARGCDEGLFEKLDYSKI
                     GNKADFNPAAVTECGIGVFVWSTVMAYNGDKLKDGPKTWADFWDTKKFPGKRGLRKGA
                     RYNLEFALMADGVKTGDVYKVLATKEGAERAFKKLGELKPNIQWWEAGAQPPQFLVAG
                     DVAMTTVYNGRIDAANREGKNLKISWIGGIYDLDYWVIPKGAPNKDASLKFIAFASTP
                     DAQAEYAKNIAYGPTNNKALAKLDAKVLANLPTSPANSEDALQFNLKFWADQGEDLEK
                     RFASWATN"
     gene            complement(2168..3268)
                     /locus_tag="VF308_00525"
     CDS             complement(2168..3268)
                     /locus_tag="VF308_00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007863085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435167.1"
                     /translation="MAPEEPLVRFIGVQKTYDGVQLVVRQLDLAIRRGEFLTLLGPSG
                     SGKTTTLMMLAGFESPTAGDILLDGKPITRTPPHKRNFGMVFQNYALFPHLTVGQNVA
                     YPLTVRKVPKAQASQRVARALGMVRLEGMDARLPSQLSGGQQQRVALARALVFEPQLV
                     LMDEPLGALDKQLREHMQIELKELHRQLGVTFVYVTHDQGEALTMSDRVAVFNDGAIQ
                     QVDAVDRMYEAPANRFVAGFIGDSTMLRGTVRAAQVDNDNERCGIVLTDGRVLTGLNV
                     NGARVGAQVEACIRPERIVVHTHAVNERGNVLQAQVRGVIYFGDHLRLLCAVGEGQSA
                     ATVKLPLSVPAVPQPGDAVWLELAPELTRIYA"
     gene            complement(3347..4648)
                     /gene="gabT"
                     /locus_tag="VF308_00530"
     CDS             complement(3347..4648)
                     /gene="gabT"
                     /locus_tag="VF308_00530"
                     /EC_number="2.6.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011802009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003867 - 4-aminobutyrate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009450 - gamma-aminobutyric acid catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HEX7435168.1"
                     /translation="MHREPQLTNMTNAALMARREAAVARGVGQAHEIFISRGRNAEVW
                     DVEGRRYIDFAGGIAVLNTGHCHPQIIDAVKAQLDLYTHTCFQVVAYEPYVELAERMN
                     ALAPGEFAKKTLFLSTGAEAIENAVKIARAHTRRPGIIAFNGGYHGRTLLTLGLTGKV
                     APYKTGFGPFPGEVYHAQFPNELYDISVEAALHSVELLFKNDIEAERVAAFIIEPVQG
                     EGGFYVAPNAFIAGLKTLADRHGILLIADEVQTGAGRTGTWFASERWPVAPDLIASAK
                     SLAGGFPLSAVIGRAEVMDAPAPGGLGGTYAGSPIGCAAALAVLKVFEDERLLQRCQA
                     LGERLLAGLKAIAARVPAIGDVRGLGAMLAIELFKGGERREPDADLTKRVLAEAARRG
                     LILLSCGTNGNVIRILVPLTAPDAQIDEGLQILAESFAAVS"
BASE COUNT          763 a         1630 c         1692 g          870 t
ORIGIN      
        1 tgcccgggta ggtctgcggc acgtagacgc ggaagaaccc ggccagcggc gcgctgccca
       61 gcgacacggc cgcgcgcagg taggtgggcg gcacgctctt catcacgctg tacagcggca
      121 ggatcatgaa cggcaggagg atgtgcacca tcgcgatgat cacgccggtg cggttgaaca
      181 gcagcgccag cggccgctcg atcaggtgca ggccgatcag tgcgtggttc accaggcctt
      241 cggactggag cagcacgatc cacgcggcca cacgcaccag gatcgaggtc cagaacggca
      301 ccagcaccag gatcatcagc acgttggcct ggcgcgcgga caaggtgctg agccagtacg
      361 cgagcggata accgagcagc agggcccaca gcgtgacgat ggcgctgatc tcgaaggttc
      421 gcgccaggat gcgggcgaac acgcgttgct cggggtcgac ccgttcgatc gcgccgtgca
      481 cgtcgcgccg caggtcgacc gaggtgagca gatagtcggg cgtccagcgc gagccgttct
      541 tcgcgatcgc tcgccagtac ttcgcttcgt cccagcgctc gtcgagcgcg agcagcccgg
      601 ccttcatggc ggccggggtc ccgggtcctt ccagcggcaa ggctttgaag gtattcatca
      661 cgagcgagcg cgcgccgggc acctcgctgt tgaggcggcg cgccagtgcg ccggcgtcgg
      721 aactgtcagg cagggcgctc aggtccttgg cgatggccgc gaatgcgtcg gcttccgggg
      781 tgccttcgcg gttccagcct tgcagcgccg cgacggtgcg cggcagcgcg ttggcgacct
      841 ccgggttctc gaccgcgcgc ttgagcagcg tcgcgatcgg caccaggaag gtcagcatca
      901 ggaaaagcag caagggcaag gtgagcgaaa acgcgcgcag cttgcgccgc cgctcggcgc
      961 gcgccagctg gtgtcgcagc gcctggggat cggggatgcc cggcagagcg acggcgaggc
     1021 tggaactcat ggtgtcgcgg gttgaacgag cggcggtccg tcacgcggac cgccgcttgc
     1081 gcgggcagcc tagttcgtgg cccaggaggc gaagcgcttc tcgagatcct cgccctggtc
     1141 ggcccagaac ttgaggttga actgcagcgc gtcctccgag ttggcgggcg acgtcggcag
     1201 gttggccagc accttggcgt cgagcttggc gagcgccttg ttgttggtcg ggccgtaggc
     1261 gatgttcttc gcgtactcgg cctgcgcgtc cggggtgctg gcgaaggcga tgaacttcag
     1321 cgaggcgtcc ttgttcggcg cgcccttcgg aatgacccag tagtccaggt cgtagatgcc
     1381 gccgatccag ctgatcttca ggttcttgcc ttcgcggttg gcggcgtcga ttcggccgtt
     1441 gtagacggtg gtcatcgcca cgtcgccggc gaccaggaac tgcggcggct gggcgcccgc
     1501 ttcccaccac tggatgttcg gcttcaactc gccgagtttc ttgaacgcgc gctcggcgcc
     1561 ttccttcgtc gcgagcacct tgtagacgtc gccggtcttc acgccgtcgg ccatcagcgc
     1621 gaactcgagg ttgtagcgcg cgcccttgcg taagccgcgc ttgccgggaa atttcttcgt
     1681 atcccagaag tcggcccagg tcttggggcc gtccttgagc ttgtcgccgt tgtaggccat
     1741 cacggtggac cagacgaaga cgccgatgcc gcactcggtc accgccgcgg gattgaagtc
     1801 ggccttgttg ccgatcttgc tgtagtcgag cttctcgaac agcccctcgt cgcagccgcg
     1861 cgcgacatcg ggcgattcga cctcgaccac gtcccaggtc accttcttgg tctcgaccat
     1921 ggccttgatc ttggcctgct cgccgttgta ttcgaccgaa acgaccttgg tgccggcctt
     1981 ctcgaacggc tcgtagtacg ccttcttctg cgcgttggcg ttggcgccgc cgaagttcac
     2041 gacggtgatc tgctgctggg ccagcgccgg cagcgagatc gcggcgacga gggcggtggc
     2101 caaaatgctc ttgttcatgg tgtcaacttc tcctggggtg ggtggggaaa atctctcttg
     2161 gcaagtatca ggcgtagatc cgtgtcagct cgggtgccag ctcgagccag acggcgtcac
     2221 cgggctgcgg gacggcgggc accgacagcg gcagcttgac ggtggccgcg ctctggcctt
     2281 cgccgacggc acacagcagc cgcagatggt cgccgaaata gatcacgccg cgcacctgcg
     2341 cctgcagcac gttgccgcgc tcgttgacgg cgtgggtgtg gacgacgatg cgctcgggac
     2401 ggatgcaggc ttcgacctgc gcgccgaccc tcgcgccgtt gacattgagg ccggtgagca
     2461 cgcggccgtc ggtcaggacg atgccgcaac gttcgttgtc gttgtcgacc tgcgccgcgc
     2521 gcacggtacc gcgcagcatc gtgctgtcgc cgatgaagcc cgcgacgaag cgattcgccg
     2581 gcgcttcgta catccggtcg accgcgtcga cctgctggat cgcaccgtcg ttgaacaccg
     2641 cgacgcggtc cgacatcgtc agcgcctcgc cctgatcgtg ggtcacgtag acgaaggtca
     2701 cgccgagctg gcgatgcagt tccttcagct cgatctgcat gtgttcgcgc agttgcttgt
     2761 cgagcgcgcc cagcggctcg tccatcagca ccagctgcgg ctcgaacacc aatgcgcgcg
     2821 ccaacgccac acgctgctgc tggccgcccg agagctgcga aggcaggcgc gcgtccatgc
     2881 cctcgagccg gaccattccg agcgcacgcg ccacgcgttg cgatgcttgc gccttcggca
     2941 cttttcgaac cgtcagcggg tacgcgacgt tctgccccac cgtgaggtgc ggaaacaggg
     3001 cgtagttctg gaacaccatg ccgaagttgc gcttgtgcgg cggtgtgcgg gtgatcggct
     3061 tgccatcgag caggatgtcg ccggcggtcg gcgactcgaa gccggccagc atcatcagcg
     3121 tggtagtctt gcccgagccc gaggggccga gcagggtcag gaattcaccg cgccggatgg
     3181 cgaggtcgag ctgtcgcacg acgagctgga caccatcgta ggtcttctgc acaccgatga
     3241 agcgcaccag cggttcctcg ggcgccacgt gcgctgcggg gctggaattg gcagtcgatg
     3301 cttcgggagc tttggcggtc ggcatggcgt cgggcggtgt gcagggtcac gacacggcag
     3361 caaaactctc ggccaggatt tgcaggcctt cgtcgatttg cgcatcgggc gcggtcagcg
     3421 gcacgaggat ccggatgacg ttgccgttcg tgccgcagga cagcagtatg agccctcggc
     3481 gcgctgcctc ggcgaggacg cgcttggtga ggtcggcatc gggctcgcgc cgctcgccgc
     3541 ccttgaacaa ttcgatcgcg agcatcgcgc ccagcccgcg cacgtcgccg attgccggca
     3601 ccctggcggc gatcgccttc agcccggcga gcagacgctc gcccagggcc tgacagcgct
     3661 gcagcagccg ctcatcttcg aacactttca gcaccgccag cgcggcggcg cagccgatcg
     3721 ggctgccggc ataggtgccg cccaggcccc caggtgccgg cgcgtccatc acctcggcgc
     3781 ggccgatcac ggccgacagc gggaagcccc cggccagcga cttggcactc gcgatcaggt
     3841 ccggggcgac cggccaccgt tcgctggcga accaggtgcc ggtgcggccg gcgccggtct
     3901 gcacctcgtc ggcgatcagc aggatgccgt gccggtcggc caacgtcttc aagccggcaa
     3961 tgaacgcgtt cggggccaca tagaagccgc cctcgccctg gaccggctcg atgatgaacg
     4021 cggcgacgcg ctcggcttcg atgtcgttct tgaacagcag ttcgaccgaa tgcagcgccg
     4081 cctcgacgct gatgtcgtac agctcgttcg ggaactgcgc gtggtaaacc tcgcccggga
     4141 acgggccgaa gccggtcttg tagggcgcca ccttgccggt caggcccagc gtcagcagcg
     4201 tgcgaccgtg gtagccgcca ttgaaggcaa tgatcccagg gcgccgggtg tgggcgcggg
     4261 cgatcttgac ggcgttctcg atggcctccg cgccggtcga caggaacagg gttttcttcg
     4321 cgaactcgcc gggcgccagc gcgttcatcc gctcggccaa ttcgacgtag ggttcgtagg
     4381 ccaccacctg aaagcacgtg tgggtgtaca gatcgagctg ggccttcacg gcgtcgatga
     4441 tctgcgggtg gcagtgcccg gtgttgagca cggcgatgcc gccggcaaag tcgatgtagc
     4501 gccggccctc cacatcccac acctcggcat tgcggccgcg actgatgaag atctcgtgcg
     4561 cctggcccac gccccgggcc acggcggcct cgcggcgcgc catcagcgcg gcattcgtca
     4621 tgttcgtgag ttggggttcg cggtgcatgt cgcctcccat gtggtgaaac atggacttta
     4681 gacactgtgc gaccccaata ccatgtacat ccatcgagaa tcgtgggtgc actgtgctgg
     4741 cgctgtaccc tgtacagatt agccctcgta cggtgcgcca ggattcccgc ccgtccatga
     4801 tcagcctgaa cgcagactcc cccgtgccgc tggtcggcca gatcgtcgac ggctttcggc
     4861 gcctgatcac cgatcaggcg ctgcgcccag ggaccaagtt gccgtcgatc cgcgcgctcg
     4921 cggcctcgca ctcggtcagt gtgttcacgg tcgtc
//
LOCUS       DASVHM010000028         1927 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1227442, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000028 DASVHM010000000
VERSION     DASVHM010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1227442"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..694)
                     /locus_tag="VF308_00535"
     CDS             complement(143..694)
                     /locus_tag="VF308_00535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010467099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435169.1"
                     /translation="MSIKPTLRAALFIAALVGGSTVYAASMSHDEYRAANARISAEYK
                     DSKAACAKFADNAKDVCREEAKAKEKVARAELEYNRSGKTEDATKLALTKAEATYAVA
                     KEKCDDRAGNDKDVCVKEAKAAKTKAVADAKMQRRVGEARKDAAEDKRDADYGVAKEK
                     CDALSGDAKAQCLATAKARYGKA"
     gene            complement(803..>1927)
                     /locus_tag="VF308_00540"
     CDS             complement(803..>1927)
                     /locus_tag="VF308_00540"
                     /inference="COORDINATES: protein motif:HMM:NF017021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HEX7435170.1"
                     /translation="TIGESRLTGAFTYDRGRSVPLLSGRLTGSRLLLKDLGPVLGTTP
                     PGAPAEGSPARATTSPAGKAGKVLPDRPFDLPALRAMDANVLVDIAHVDLGTPLLEPL
                     QPLRTHLRLVGGMLTLSDLEARTAQGRLSGDIGLDGRAAQALWTADLRLLGVRLERWL
                     HQTREDAAPPYITGRLDGEVKVSGKGRSTAEILASLDGGMRFHLREGSLSHLAVEVAG
                     IDVAQALGMMVKGDDALVVNCNVADLVVAKGVARPRIFVIDTRDSTVWVDGSVSLESE
                     ALDLRAVVSPKDFSPLTLRTPIHVKGTFASPSVSLEAGTLAGKVGAAALLALLNPLAA
                     LIPFVDPGSGDEGEREAAQCAALAERSNLARVAPPKALRK"
BASE COUNT          274 a          679 c          654 g          320 t
ORIGIN      
        1 gatctgcgcc gcgccgagcg cgccggcaag tcgcattcaa aaggcgaaga tcccctgctc
       61 catccagcga agaagcctgc cggtggaagg aaatgaaaag agccggcgct tgccggctcc
      121 ttgttcctga cccgactccc gctcaggcct tgccgtagcg tgccttggcc gtcgccaggc
      181 attgcgcctt ggcgtcgccg ctcagcgcgt cgcacttttc cttggccacg ccgtagtcgg
      241 catcgcgctt gtcctcggcc gcgtccttgc gcgcctcgcc gaccctgcgc tgcatcttcg
      301 cgtcggcgac cgccttggtc ttcgccgcct tggcttcctt gacgcagacg tccttgtcgt
      361 tgccggcgcg atcgtcgcac ttctccttgg ccacggcata ggtggcttcg gccttggtca
      421 gcgcgagctt ggtcgcatcc tctgtcttgc cggagcggtt gtattcgagc tcggcgcggg
      481 cgaccttttc cttagccttg gcctcttcgc gacagacatc cttggcgttg tcggcgaact
      541 tggcgcaggc cgccttggag tccttgtatt ccgccgagat gcgggcgttg gcggcgcggt
      601 actcgtcgtg cgacatcgat gccgcgtaga ccgtcgatcc gcccacgagc gctgcgatga
      661 agagagcggc gcgaagggtg ggtttgatgc tcatggaaac tcctcttgat gatcgagcgc
      721 acactatcgc gaacccgcct tcgggcggcc agcggacgcc gggccgagcc ctcgtagggt
      781 ggttcctacc cgggcgcgac actcacttcc tgagcgcctt cggcggcgcc acgcgcgcca
      841 gattgctgcg ctccgcaagc gccgcacact gggccgcctc gcgctcgcct tcgtcgccgg
      901 aaccggggtc gacgaacggg atcaacgccg cgagcgggtt gagcaacgcc aacagcgccg
      961 cggccccgac cttgccggcg agagtgccgg cctcgagcga aacgctcgga ctggcgaacg
     1021 tgcccttaac atggatcggc gtgcgcaagg tcagcgggct gaagtccttc ggcgagacga
     1081 cggcgcgcaa gtcgagcgcc tcgctctcga gcgagaccga cccgtcgacc cacaccgtcg
     1141 agtcgcgcgt gtcgatcacg aagatccggg gccgggccac gcccttggcg accaccaggt
     1201 cggcgacatt gcaattgacg acgagcgcat cgtcgccttt caccatcatg ccgagcgcct
     1261 gcgccacgtc gatgccggcc acctcgaccg cgaggtgcga gaggctgccc tcgcgcaggt
     1321 gaaagcgcat gccgccgtcg aggctggcga ggatctcggc cgtcgatcgg cccttgcccg
     1381 acaccttgac ctctccgtcg agtcggccgg tgatgtacgg cggcgccgcg tcttcgcggg
     1441 tctggtgcaa ccagcgctcg agacgcacgc cgagcaggcg caagtccgcg gtccagagag
     1501 cctgcgcggc gcgcccgtcg agtccgatgt cgccgctgag gcggccctgc gcggtgcgcg
     1561 cttcgagatc gctgagggtc agcatgccgc cgaccagccg caggtgcgtg cgcagcggct
     1621 gcagcggctc gagcagcggg gtgccgagat cgacgtgggc gatgtcgacc agcacgttcg
     1681 catccatggc gcgcagcgcc ggcagatcga aggggcgatc gggcagcacc ttgccggcct
     1741 tgcccgccgg gctcgtcgtg gctctggccg gggacccctc ggccggcgca cccggcggcg
     1801 tggtaccgag gacgggcccc aggtccttga gcagcagccg cgagcccgtg agccgccccg
     1861 aaagcaaggg caccgaccgg ccgcgatcgt aggtgaaggc gcctgtcagc cggctctcgc
     1921 cgatcgt
//
LOCUS       DASVHM010000029         2450 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_290202, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000029 DASVHM010000000
VERSION     DASVHM010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290202"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..889)
                     /locus_tag="VF308_00545"
     CDS             complement(<1..889)
                     /locus_tag="VF308_00545"
                     /inference="COORDINATES: protein motif:HMM:NF012760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016742 - hydroxymethyl-, formyl- and
                     related transferase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltransferase family protein"
                     /protein_id="HEX7435171.1"
                     /translation="MRILLLATSFNALTQRIHVELAERGHELSVELDVNDNGVTEAVR
                     LFRPDLVIAPFLRRAIPEAAWRTVRCLIVHPGPVGDRGPAALDWAILEGHATWGTTLL
                     EANATFDAGDIWATRNFDLRAAAKSSLYRDEVTEAAVACVVEAIGKIERGVTTGQPLS
                     DASPGGGSWRPAIKTEQRAIDWSCDATATVLCKLYAASGQPGISDTILGLSGRLHDPW
                     PEDVLRGPPGAVIAWRDGAICRATVDGAVWITAITPEPAPGTRRFKIPATLALAGRLD
                     GIAEQAIGLGTGEGPSTFRE"
     gene            complement(897..1955)
                     /gene="hypE"
                     /locus_tag="VF308_00550"
     CDS             complement(897..1955)
                     /gene="hypE"
                     /locus_tag="VF308_00550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009668169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEX7435172.1"
                     /translation="MNVAPRAPRLAIRRLDLAAGRVDLTHGAGGRAMQQLIEEIFRPA
                     FDNPMLARGDDQAAFEVVGGRMVMSTDSFVVSPLFFPGGDIGSLAVHGTVNDVAMSGA
                     RPLYLSAGFIIEEGFPLGDLERIARSMGEAARAAGVAVVTGDTKVVERGKADGLFINT
                     AGIGVVPPGLEISGDRARAGDAILISGTMGDHGVAIMAHRAGLEFETTIVSDSTALNG
                     LVADMVAAVPSIRVLRDPTRGGLAATLNEICHQSAVGMRLDEAAIPFRPEVLGACELL
                     GLDPLNVANEGKLIAIAPAEDAGRLLAVLRRHPLARDAMVIGEVIADPARFVRMTTRI
                     GGERMIDWLAGEQLPRIC"
     gene            complement(1952..>2450)
                     /gene="hypD"
                     /locus_tag="VF308_00555"
     CDS             complement(1952..>2450)
                     /gene="hypD"
                     /locus_tag="VF308_00555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEX7435173.1"
                     /translation="PYEFFAEEYRKPVAISGFEPIDILQSILMLVRQLNEGRAEVENQ
                     YIRAVTRDGNPRAKQVVSRIFELRRDFEWRGLGHIPYSALRLKDAYAAFDAERRFDEP
                     YIPSEGNKACACPAILRGAKKPTDCRLFGRACTPETPLGSCMVSSEGACAAYYSYGRM
                     RERTQ"
BASE COUNT          411 a          806 c          856 g          377 t
ORIGIN      
        1 cctcgcgaaa ggtgctcggg ccttctccgg ttccgagccc gatcgcctgc tcggctatgc
       61 catcgaggcg gccggccaat gccagcgtcg cggggatctt gaaccggcgg gtgccggggg
      121 cgggttctgg cgtgatggca gtgatccaca ccgccccgtc gacggttgct cggcagatcg
      181 cgccgtcgcg ccaggcgatg actgctcccg gtggcccccg caagacatct tctggccagg
      241 gatcgtgcag ccgcccggac agcccaagta tagtatcgga aatgccgggc tggccggacg
      301 cggcataaag cttgcacagc acggtcgcgg tcgcgtcgca cgaccagtcg atcgcccgct
      361 gctcggtctt gatggccggg cgccagctgc cgccgcccgg gcttgcgtcc gacaaaggct
      421 ggccggtggt gacgccgcgt tcgatcttgc cgatcgcctc gaccacgcaa gcaaccgcgg
      481 cctcggtgac ttcgtcgcga tagaggctcg atttcgcggc cgcgcgcagg tcgaaattgc
      541 gggttgccca gatgtcgccg gcgtcgaacg tggcattcgc ctcgagcaat gtggtgcccc
      601 aggtcgcgtg accttcgagg atcgcccagt cgagcgcggc tgggccgcgg tcgccgacgg
      661 ggccgggatg gacaatcagg cagcggaccg tgcgccaggc tgcctccgga atagcgcggc
      721 gcaggaacgg tgcgatcacg agatccggcc gaaacaagcg cacggcttcg gtcacgccgt
      781 tgtcgttgac gtcgagctcg accgagagct cgtggccgcg ctcggcgagc tcgacgtgga
      841 tgcgctgggt cagcgcgttg aagctggtgg cgagcaacag gatgcgcatc gtgccctcag
      901 cagatgcgcg gcaactgctc gccggcgagc cagtcgatca tgcgctcgcc gccgatccgg
      961 gtcgtcatgc gcacgaagcg cgccgggtcg gcgatcactt cgccgatcac catggcatcg
     1021 cgagcgagtg gatggcggcg aagcacagca agcagacgcc cggcgtcttc ggcgggcgcg
     1081 atcgcaataa gtttgccctc gttggcgacg ttcagggggt cgagaccgag cagctcgcac
     1141 gccccgagga cttcaggcct gaacggaata gcggcttcgt caagccgcat tcccacggcc
     1201 gactggtggc agatctcgtt gagcgtcgcc gccaggccgc cgcgggtggg atcgcgcaac
     1261 acgcggatgc tcggcacggc ggccaccatg tcggcgacca gtccgttcag cgccgtggaa
     1321 tccgaaacga tggtcgtctc aaattcgagg ccggcccggt gcgccatgat ggcgacgccg
     1381 tgatcgccca tggtccctga gatcaggatc gcatcgccag cgcgcgcgcg gtcgcccgaa
     1441 atctcgagcc cgggcggcac gacgccgatg ccggcggtgt tgatgaaaag gccgtcggcc
     1501 ttgccgcgct cgaccacctt ggtgtcaccg gtgacgaccg cgacgccggc ggcgcgcgcg
     1561 gcctcgccca tcgagcgggc gattcgctct agatcgccga gcggaaagcc ctcttcgatg
     1621 atgaagccgg ccgagagata gagcgggcgc gcgccgctca tcgcgacgtc gttgacggtg
     1681 ccgtgcacgg cgagcgaacc gatatcgccg ccggggaaga acagcggaga gaccacgaag
     1741 gagtcggtcg acatcaccat gcgtccgccc acaacctcga aggcggcctg gtcgtcgccg
     1801 cgcgccagca tcgggttgtc gaaggccggg cggaaaatct cctcgatgag ctgctgcatg
     1861 gcgcggccgc ccgccccgtg cgtgagatcg acacggccgg ccgcaaggtc aagccggcgt
     1921 atggccaaac gcggcgcacg gggggcgacg ttcattgcgt ccgctcccgc atccggccgt
     1981 aactgtaata ggcggcgcag gcgccctccg aggacaccat gcaagagccg agcggtgttt
     2041 ccggggtaca ggcgcgacca aacagtcggc agtcggtcgg ttttttggcg ccgcgcagga
     2101 tcgccgggca ggcgcaggcc ttatttccct cgctcgggat atagggctcg tcgaagcggc
     2161 gctcggcatc gaaggccgcg taagcatcct tgaggcggag agccgaatac gggatgtggc
     2221 cgaggccgcg ccattcgaag tcgcgccgca actcgaagat gcgcgaaacc acctgcttgg
     2281 cgcgcggatt gccgtcacgg gtgaccgcac ggatatactg gttctccacc tcggcgcggc
     2341 cctcgttgag ctgccgcacc agcatcagaa tcgattgaag gatatcgatc ggctcgaagc
     2401 cggagatcgc gaccggcttg cggtactcct cggcgaagaa ctcatacggt
//
LOCUS       DASVHM010000030         1542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_578935, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000030 DASVHM010000000
VERSION     DASVHM010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578935"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1428
                     /locus_tag="VF308_00560"
     CDS             <1..1428
                     /locus_tag="VF308_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012203004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEX7435174.1"
                     /translation="ADLCDPGTFIEYGALAIAAQRSRRTLDDLIRNTPADGMVTGIGG
                     VNGAAHGTEASRCVVMAYDATVLAGTQGMRNHQKTDRMLGIALDQRLPVVLFAEGGGG
                     RPGDTDAAVVAGLHVGTFASYARLSGRVPVLGIVSGRCFAGNAALVGCSDVIIATRNS
                     NIGMGGPAMVEGGGLGLYAPEQIGPSAVQSANGVIDVLVEDEGHAVAAAKRYLSFFQG
                     RLTEWRGADAALLRSVLPENRVRVYDMRAVLRLVVDDDSMLELRAGFGAGIFTVLARI
                     EGRPIGLMASNPAHLGGAIDADAADKAARFMQLCNAHGLALVSLVDTPGFMVGPDIET
                     RAQVRHVSRMFVVAAHLRVPFFAVVLRKGYGLGAMAMTGGGFHATVATVAWPSGEFGA
                     MGLEGAVRLGYRKELAAAAEGAERDALYETLVSQQYANGKAINMAATLEIDAVIDPAE
                     TRNWLARGLTSARVGPKPDGYVDCW"
BASE COUNT          225 a          521 c          555 g          241 t
ORIGIN      
        1 gccgacctct gcgatcctgg caccttcatc gaatacggcg cgctcgccat cgccgcccag
       61 cgcagccggc gcacgctcga cgacctgatc cgcaacacgc cggccgacgg catggtgacc
      121 ggcatcggcg gcgtcaacgg cgccgcgcat ggcaccgagg catcgcgctg cgtggtgatg
      181 gcctatgacg ccaccgtgct ggcgggaacg cagggcatgc gcaaccatca gaagaccgac
      241 cgcatgctcg gcatcgcgct cgaccagcgc ctgcccgtgg tgctcttcgc cgaaggcggc
      301 ggcgggcgcc ctggcgacac cgatgcggcc gtggtcgcgg gcctgcatgt cggcacgttc
      361 gcgagctacg cgcgcctgag cggccgcgtg ccggtgctcg gcatcgtgtc gggacgctgc
      421 tttgccggca acgccgcgct ggtcggctgc agcgacgtga tcatcgccac gcgcaacagc
      481 aacatcggca tgggcggccc ggccatggtc gagggcggcg gcctcggcct ctatgcgccg
      541 gagcagatcg ggccgagcgc ggtgcagtcc gcaaacggcg tcatcgatgt gctggtcgag
      601 gatgaaggcc acgcggtggc cgcggcgaag cgctatctct cgttcttcca gggccgcctg
      661 accgaatggc gtggcgccga cgccgcgttg ctgcgaagcg tgctgccgga gaatcgggtg
      721 cgcgtttacg acatgcgggc ggtgctgcgg ctcgtcgtcg acgacgattc gatgctcgag
      781 ttgcgcgccg gcttcggcgc cggcatcttc acggtgctgg cgcgcatcga gggtcggccg
      841 atcggcctga tggccagcaa tccggcccac ctcggcggcg cgatcgatgc ggacgcggcc
      901 gacaaggcgg cgcgcttcat gcagctctgc aacgcccacg gcctggccct ggtctcgctc
      961 gtcgacacac ccggcttcat ggtcggcccc gacatcgaga cccgcgccca ggtgcgccac
     1021 gtgagccgga tgttcgtcgt cgccgcgcac ctgcgcgtgc cgttcttcgc ggtcgtgctg
     1081 cgcaagggct acggcctcgg cgcgatggcg atgaccgggg gcggttttca tgcgacggtc
     1141 gcgaccgtcg cgtggcccag tggcgagttc ggcgcgatgg ggctggaagg cgcggtgcgc
     1201 ctgggctatc gcaaggagct cgccgcggca gccgagggag ccgagcgcga cgcgctgtac
     1261 gagacgctcg tgagccagca gtatgcgaac ggcaaggcga tcaacatggc ggcgacgctc
     1321 gagatcgacg ccgtgatcga cccggccgag acgcgcaact ggctcgcacg cggccttacg
     1381 tcagccaggg tcgggccgaa gcccgacggc tatgtcgatt gctggtgact cgccgcgtgg
     1441 cgcaggcccg atctctcgcc cgaacgtggg gtaggacgcc tagattcctt gaccagattg
     1501 aatccgcgtc gattgagtca agtttttcta cgcggtaatg ta
//
LOCUS       DASVHM010000031         1671 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1155485, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000031 DASVHM010000000
VERSION     DASVHM010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1155485"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /locus_tag="VF308_00565"
     CDS             complement(<1..806)
                     /locus_tag="VF308_00565"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7435175.1"
                     /translation="MNDQTVTADATITAEELAEFVAVARSFAKEVPGKLWLDLDIGSA
                     DAIDKSWAGLCEIGFDRCLVSEQAGGTGLPASALPALAEEIATGDGGVAMLLLLSNIA
                     LSLLPAERLAELGETERFAFIPAVGAREPGVSLPELAGGKLTGEIAFAVGGFAVDGLV
                     VACRAGDGFALAAVECDAKGVTIERVEDQMALGAARVAKIEFAGAKAAKIGGGAELDH
                     ANAVLNSGIAAIARGISRRARAMAQEYAENRYQGGGPIIIHGAVRDMLAR"
     gene            complement(806..>1671)
                     /locus_tag="VF308_00570"
     CDS             complement(806..>1671)
                     /locus_tag="VF308_00570"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7435176.1"
                     /translation="PKRPYETSLGFLVDAESPGYSVTKVEHKMGQRSSPAAELTFDEV
                     FVPDEHVLGRPGDGIAMTAGVLAGSRPVVGGIGTGIARGAYERLIDWLQNDPAAAGLL
                     DKQQVQLALARMWEDIHLSRQAYLDAATEFDLISLGKIFAMPIVKLFGRMPEAVRTNA
                     LTKKQLNSTMTRRLMMQLMDRVVGDRTLTRTLGLSSMAKAHGADTAMKVTGMALAIAG
                     LDCGALRPELEKCMRDAKLCQIYEGTNQLNRLEVYEGLVAGHSMEVLADSSGLHHQHA
                     NGRPAGSEVMH"
BASE COUNT          244 a          586 c          557 g          284 t
ORIGIN      
        1 atgcgcgcga gcatgtcgcg cacggcgccg tggatgatga tcggaccacc gccctgatag
       61 cggttctcgg cgtactcctg agccatcgcg cgggcacgcc gcgagatccc tcgggcgatc
      121 gccgcgatgc ccgagttgag cacggcgttg gcgtgatcga gctccgcgcc gccgccgatc
      181 ttcgcggcct tcgcgccggc gaactcgatc ttcgcgacgc gcgcggcgcc gagcgccatc
      241 tggtcctcga cgcgttcgat cgtgacgccc ttggcgtcgc attccacggc ggcgagcgcg
      301 aatccgtcgc cggcgcggca ggcgacgact aaaccgtcga cggcgaatcc gccgaccgcg
      361 aacgcgatct cgccggtcaa cttgccgccg gccagctcgg gcagcgaaac accgggctcg
      421 cgcgcaccga cggccggtat gaacgcgaat cgctccgtct cgccaagctc ggccagccgt
      481 tcggccggca gcagcgacag cgcgatgttc gagagcagca gcaacatcgc cacgccgccg
      541 tcgccggtgg cgatctcttc ggcgagcgcc ggcagcgcgc tcgccggcag accggtgccg
      601 ccggcctgct cgctcacgag gcagcggtcg aagccgattt cgcagagacc cgcccagctc
      661 ttgtcgatcg cgtcggcact gccgatgtcg aggtctagcc agagtttgcc cggcacttcc
      721 ttggcgaaac tgcgcgccac cgctacgaac tcagcgagct cctcggccgt gatcgtggca
      781 tccgcggtca ccgtttggtc gttcatcagt gcattacctc cgagccggcg ggccggccgt
      841 tcgcgtgttg atggtgcaga ccgctgctgt cggccagcac ctccatcgag tgcccggcga
      901 ccaagccttc gtagacctcc aggcggttga gctggttggt tccctcgtag atctggcaaa
      961 gcttcgcgtc gcgcatgcac ttctcgagtt ccgggcgcag cgcgccgcag tcgagcccgg
     1021 ctattgctag tgccatgccg gtgaccttca tcgcggtgtc ggcgccgtgc gccttcgcca
     1081 tcgacgacag gccgagcgtg cgcgtcagcg tgcggtcgcc gaccacgcgg tccatcagct
     1141 gcatcatcag ccggcgcgtc atcgtcgagt tcagttgctt cttggtcagc gcgttcgtgc
     1201 gcaccgcctc gggcatgcgg ccgaacagct tgacgatcgg catcgcgaag atcttgccca
     1261 gcgagatcaa atcgaactcg gtggcggcgt ccaggtaggc ctggcgcgag agatggatgt
     1321 cttcccacat ccgcgccaat gcgagctgta cctgctgttt gtcgagcagg cccgcggcgg
     1381 ccgggtcgtt ttgcagccag tcgatcagtc gctcgtaggc gccgcgcgcg atgccggtgc
     1441 cgatgccgcc gacgaccggt cgcgatcccg cgagcacgcc ggcggtcatc gcgatgccgt
     1501 cgccggggcg accgagcacg tgctcgtcgg gcacgaagac ctcgtcgaac gtcagctcgg
     1561 cggccggcga cgagcgctgg cccatcttgt gctcgacctt ggtgacgctg taacccgggc
     1621 tttcggcgtc gaccagaaaa ccgagcgacg tctcataggg gcgcttgggg t
//
LOCUS       DASVHM010000032         3077 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_362786, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000032 DASVHM010000000
VERSION     DASVHM010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3077
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362786"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1297)
                     /locus_tag="VF308_00575"
     CDS             complement(<1..1297)
                     /locus_tag="VF308_00575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435177.1"
                     /translation="MSYEYGSETRLLELPNPYQLQNRLLWLCAALLVVAGVTSLVWAR
                     NAMQERALRLAGAPLLAGVLLLAAGLACAASAARRLRFFFGRGRPASLAPEIPVGATG
                     GSPAADHIKEILRQGGLTYPEPQGAIEGLLYHWAPTLITAPREVQFLARRYMFNLAAI
                     AATLVSFVFSWLVFGNEATRPWIGILYFAFGVFFLLQPVLTQHKARLTTASLVGLIAA
                     AILGPVVLGLAGSKLPSLGTFSLNVQTFTMLGTALVACGLAMAAVLAQVDSAPQTRAS
                     VEQNRLSMNAPPATLMDELDRTMQASWTERIPNRRYARIDPVTPAATPSGTFAGELFE
                     ESQPLPVAGTKAPTFGAALAERRHQALLLIDLYATVLVLAATAMTLYFVRHFDVSVPW
                     SENRYSLVGTSAILAFVAAFCFQASARLWGRFNFESVLTW"
     gene            1426..1911
                     /locus_tag="VF308_00580"
     CDS             1426..1911
                     /locus_tag="VF308_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008906907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3237 domain-containing protein"
                     /protein_id="HEX7435178.1"
                     /translation="MEAGQVADPLRAPALQRFADLTVEVGLPIEVGAVGHGTRRVIPI
                     LGGSCVGRDWSARVLPGGADFQLIVNERMARLEARYVLETDGGDRIYVRNDALRTAAP
                     EVMARLVRGEPVDPAAVYFRCVPSFETSAPALAWIMERLFIGTGVRRPHDVVMRFFEV
                     L"
     gene            complement(1954..>3077)
                     /gene="pcaF"
                     /locus_tag="VF308_00585"
     CDS             complement(1954..>3077)
                     /gene="pcaF"
                     /locus_tag="VF308_00585"
                     /EC_number="2.3.1.174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0019619 - 3,4-dihydroxybenzoate catabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3-oxoadipyl-CoA thiolase"
                     /protein_id="HEX7435179.1"
                     /translation="DLGAIPIKALMARSPEVDWHAVTDVIYGCANQAGEDNRNVARMA
                     ALLAGLPVEVSGVTINRLCGSSLDAVGTAARAIKSGEAQLVIAGGVESMSRAPFVMPK
                     AESAFSRAAAVYDTTIGWRFVNKLMKERYGVDSMPETAENVAADFRIEREAQDRMALA
                     SQQKAVAAQKSGFFDAELTPVTIVQKKGEPIVVAKDEHPRETSLEALAKLKGIVRPDG
                     SVTAGNASGVNDGACALLIATEAAAVRHGLTARARILGMATAGVAPRIMGFGPAPATR
                     KVLDLTGLSLAQMDVIELNEAFAAQGLAVLRDLGVADGDPRVNPNGGAIALGHPLGAS
                     GARLVTTAMYQLMKTGGRYALCTMCIGVGQGIALVIERI"
BASE COUNT          461 a         1037 c         1105 g          474 t
ORIGIN      
        1 cccaggtcag caccgattcg aaattgaagc gaccccagag ccgcgctgaa gcctggaagc
       61 aaaacgcggc gacgaaggcg aggatggccg acgtgccgac cagcgaatag cggttttccg
      121 accaaggcac ggatacgtcg aaatggcgca cgaagtagag cgtcatcgcg gtcgcggcga
      181 gcaccagcac ggtcgcgtag agatcgatga gcagcagcgc ctggtggcgg cgctcggcga
      241 gcgcggcgcc gaaggtcggc gccttcgtgc cggcgaccgg cagcggctgg ctttcctcga
      301 acagttcgcc ggcgaaggtg ccgctcggcg tcgcggccgg cgtcaccggg tcgatgcgcg
      361 catagcgccg gttcgggatg cgctcggtcc acgatgcctg catcgtccga tcgagttcgt
      421 ccatcagcgt cgccggcggc gcgttcatcg agagccggtt ctgctcgacg ctggcacgcg
      481 tctgcggcgc gctgtcgacc tgggcgagga ccgcggccat cgccagaccg caggcgacga
      541 gcgcggtgcc gagcatcgtg aaggtctgga cgttgagcga gaacgtgccg agcgagggca
      601 gtttcgagcc cgcgaggccg agcacgaccg gaccgaggat ggccgcggca atcaggccga
      661 cgagcgatgc ggtcgtgagc cgcgccttgt gctgcgtcag caccggctgg agcaggaaga
      721 acacgccgaa ggcgaagtag aggatgccga tccacggtcg tgtcgcttcg ttgccgaaga
      781 cgagccacga gaacacgaag ctcaccagcg tcgccgcgat cgcggcgagg ttgaacatgt
      841 agcgccgcgc caggaactgc acctcgcgcg gcgcggtgat gagcgtcggc gcccagtggt
      901 agagcaggcc ctcgatcgcg ccctgcggct cgggataggt gagcccgccc tggcgcagga
      961 tttccttgat gtggtccgcg gccggggaac cgccggtcgc gccgaccggg atctccgggg
     1021 cgagcgacgc gggccggccg cggccgaaga agaagcgcag gcgccgcgcc gcgctcgccg
     1081 cgcaggccag gcccgcggcc agcagcagga cgccggccag gagcggggcc ccggcgagcc
     1141 gcagcgcgcg ctcctgcatc gcgttcctgg cccagacgag gctcgtcacg cccgccacga
     1201 ccagcagcgc ggcgcacagc cagagcaggc gattctgcaa ctggtatgga ttgggcagtt
     1261 cgagcagccg ggtctcggag ccgtattcgt aggacatcga tgcttccctg ttgtcggcga
     1321 cgacttcagt gtaggggcgg acccggccgc gcagaacgac cgcaagccgc gcgcagtgtt
     1381 ttcccgcttg tgacgctgtc gaccttcggg tgtcatcgac gggcgatgga agctggtcaa
     1441 gtagcggacc cgctgcgcgc cccggcgctg cagcgctttg ccgacctcac ggtcgaagtc
     1501 ggcctgccga tcgaagtcgg cgcggtcggc cacggcacgc gccgcgtgat tccaatcttg
     1561 ggtggctcgt gcgtcgggcg cgactggtcg gcgcgtgtgc tgccgggcgg ggccgatttt
     1621 cagctcatcg tcaacgagcg catggcgcgg ctcgaagcgc gctacgtgct cgaaaccgac
     1681 ggcggcgacc gcatctacgt caggaacgac gcgctgcgca ccgcggcgcc cgaagtgatg
     1741 gcgaggctcg tgcgcggcga gccggtcgac ccggcggcgg tctactttcg ctgcgtaccg
     1801 agcttcgaaa ccagcgcgcc ggcgctcgcc tggatcatgg agcgtctgtt cataggcacc
     1861 ggggtgcgcc ggccgcacga tgtcgtgatg cgcttcttcg aggtgctgta ggttcgttga
     1921 tcgcccatcg accgatgggg aaaagtcgag cctctagatc cgttcgatca ccagcgcaat
     1981 gccctgcccg acaccgatgc acatcgtgca cagcgcgtag cggccgccgg tcttcatcaa
     2041 ctggtacatc gccgtcgtga ccaggcgggc gccgctcgcg ccgagcgggt ggccgagggc
     2101 gatcgcgccg ccgttcgggt tgacgcgcgg gtcgccgtcg gcgacgccga ggtcgcgcag
     2161 cacggcgagg ccctgtgccg caaacgcctc gttgagttcg atcacgtcca tctgggcgag
     2221 gctcaggccc gtcaggtcga gcaccttgcg ggtcgccggc gcggggccga agcccatgat
     2281 gcgcggcgcg actccggccg tcgccatgcc gaggatgcga gcgcgcgccg tgagtccgtg
     2341 ccggaccgcg gcggcttctg tcgcgatcag cagcgcgcag gcgccgtcgt tgacgcccga
     2401 ggcgttgccc gccgtgacgc tgccgtcggg ccgcacgatg cctttcagct tggcgagcgc
     2461 ttcgaggctg gtttcgcgcg ggtgctcgtc cttcgcgacg acgatcggtt cgcccttctt
     2521 ctgcacgatc gtgaccggcg tcagctcggc gtcgaagaag ccggacttct gcgccgcgac
     2581 ggctttctgc tggctcgcca gcgccatgcg gtcctgcgcc tcgcgctcga tcctgaaatc
     2641 cgcagcgacg ttttcggccg tctcgggcat cgagtcgacg ccgtagcgtt ccttcatcag
     2701 cttgttgacg aagcgccagc cgatcgtcgt gtcgtagacg gcggcggcgc ggctgaaggc
     2761 gctctcggcc ttcggcatca cgaacggcgc ccggctcatg ctctcgacgc cgcccgcgat
     2821 caccagctgc gcctcgccgc tcttgattgc gcgcgccgcc gtgccgaccg catcgaggct
     2881 cgagccgcag agccggttga tcgtcacgcc cgacacctcg acgggcagcc cggcgagcag
     2941 cgcagccatg cgcgcgacgt tgcggttgtc ctcgccggcc tggttggcgc agccgtagat
     3001 cacgtcggtg acggcatgcc agtcgacctc agggctgcgc gccatcaagg ctttgatcgg
     3061 gattgcgccg aggtcgt
//
LOCUS       DASVHM010000033         2117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_362881, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000033 DASVHM010000000
VERSION     DASVHM010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362881"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(222..1721)
                     /locus_tag="VF308_00590"
     CDS             complement(222..1721)
                     /locus_tag="VF308_00590"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011808938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008714 - AMP nucleosidase activity
                     [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0044209 - AMP salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
                     /protein_id="HEX7435180.1"
                     /translation="MTLVPNYVAPARFDDPAAALDQVRAIYDGSVNHLRGALQAFVGG
                     EQLGGRVRATYPFVRVHTDTVARADSRLSYGFVSGPGTYETTLTRPDLFGNYYLEQFR
                     LLLQNHGVALEIGAGTQPMPVPFSFAEHDHIEGHLDAERRLLMRDMFDLPDLGAMDDG
                     IANGTFEPAPGEPRPLSLFTAPRVDYSLHRLRHYTGTGPEHFQNFVLFTNYQFYIDEF
                     VRLGHESMAGASETGAYTAFIEPGNVITRRSGLAARAGDDLGAAPPRLPQMPAYHLVR
                     EDGSGITMVNIGVGPANAKTITDHIAVLRPHAWVMLGHCAGLRNTQQLGDYVLAHGYV
                     REDHVLDEDLPLWVPIPPLAEVQLALEAAVAAITQLKGYELKRIMRTGTVASTDNRNW
                     ELLPSRNAGSTPQRRFSQSRAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGEIK
                     LPGMANHFYRERVDQHLRIGMRAIELLREQGVDQLHSRKLRSFAEVAFQ"
     gene            complement(1787..2062)
                     /locus_tag="VF308_00595"
     CDS             complement(1787..2062)
                     /locus_tag="VF308_00595"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HEX7435181.1"
                     /translation="MARIVVKPESAEPAREILRELVAASRREPGCVSYELFQRPDARH
                     VFQTCEAWRDQAAVDGHMKAPHVGAAIAAAGPLFSAAPEIVSFEKLM"
BASE COUNT          326 a          678 c          753 g          360 t
ORIGIN      
        1 cgcccaacag cgccggcagc agcaccgctt gcgcacaacg aagcgcttca agatcgctcg
       61 cctcgattgc agcggcttga gcttgggcca ccagctccat atcaactcga cgtggtcttg
      121 ccatgaacat agctcccagg agcgtacgca cctgcgagca tgtcacaatt aggctcatct
      181 tgaaagctac ttagactagc aaagtcggcc ggcgccgggc gctactggaa cgcgacttcc
      241 gcgaagctgc gcagcttgcg gctgtggagc tggtcgactc cttgctcgcg cagcagttcg
      301 atcgcgcgca tgccgatgcg caggtgctgg tcgacgcgct cgcggtagaa gtgattcgcc
      361 atgcccggca gcttgatctc gccgtgcagc ggcttgtcgc tgacgcagag cagcgtgccg
      421 tagggcaccc ggaagcgaaa gccattggcg gcgatcgtcg cgctctccat gtcgagggcg
      481 atcgcccggc tctggctgaa gcgccgctgc ggcgtgctgc cggcattgcg cgacggcagc
      541 aattcccagt tgcggttgtc ggtgctggcg acggtgccgg tgcgcatgat gcgcttgagc
      601 tcatagccct tgagctgcgt gatggcggcg accgccgctt cgagcgcgag ctggacctcg
      661 gcgagcggcg ggatcggcac ccacagcggc aggtcttcgt cgagcacgtg gtcttcgcgc
      721 acgtagccgt gggcgagcac gtagtcgccg agctgctggg tgttgcgcag gcccgcgcag
      781 tgaccgagca tgacccaggc gtgcgggcgc agcacggcga tgtggtcggt gatcgtcttg
      841 gcgttggccg gtcccacgcc gatgttgacc atcgtgatgc cgctgccgtc ttcgcgcacc
      901 aggtgatagg ccggcatctg cggcaggcgc ggcggcgcgg cgccgaggtc gtcgccggcg
      961 cgcgccgcca ggccgctgcg gcgcgtgatc acgttgccgg gctcgatgaa ggccgtgtag
     1021 gcgcctgtct ccgacgcacc ggccatgctc tcgtggccca ggcgcacgaa ctcgtcgatg
     1081 tagaactggt agttggtgaa gagcacgaaa ttctggaaat gctcgggccc cgtgcccgtg
     1141 tagtggcgca ggcggtgcag cgaatagtcg acccgcggcg ccgtgaacag cgacagcggc
     1201 cggggttcgc ccggcgcggg ttcgaacgtg ccgttggcga tgccgtcgtc catcgcgccg
     1261 aggtcgggca ggtcgaacat atcgcgcatc aggaggcgcc gctcggcgtc caggtggcct
     1321 tcgatgtggt cgtgctcggc gaacgagaag ggcaccggca tcggctgcgt gccggcgccg
     1381 atctcgagtg cgacgccatg gttctgcagc agcaggcgaa actgttcgag gtagtagttg
     1441 ccgaacaggt cgggccgggt caaggtcgtc tcgtaggtgc cggggcccga cacgaagccg
     1501 tagctcaggc gcgaatcggc gcgcgccacg gtgtccgtgt ggacgcgcac gaagggatag
     1561 gttgcgcgca cccgcccccc cagttgctcg ccgccgacga aagcctgcaa ggcgccgcgc
     1621 aggtgattca cgctgccgtc gtagatcgcc cgaacctggt cgagcgcggc ggcgggatcg
     1681 tcgaagcgcg ccggtgcgac gtagttcgga accagggtca tggggtcttt cttggccatg
     1741 gccctattct cgccgccgtc gctcgtacgc aagcgcgcgg cggcacctac atcagctttt
     1801 cgaacgacac gatctctggc gcggcgctga acagggggcc ggccgcggcg atcgctgcgc
     1861 cgacgtgcgg ggccttcatg tgcccgtcga ccgcagcctg gtcgcgccag gcctcgcagg
     1921 tctggaacac gtgtcgcgcg tcgggacgct ggaacagctc gtaggagacg cagccgggct
     1981 cccggcgcga cgcggccacc agttcgcgaa ggatttcgcg tgccggctcg gccgactcgg
     2041 gtttgacgac gatgcgggcc atgacatgaa tcatccttgc ctccatgaat tgcattttgg
     2101 acccgcgcgg gcatggc
//
LOCUS       DASVHM010000034         2513 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1228039, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000034 DASVHM010000000
VERSION     DASVHM010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1228039"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..366
                     /locus_tag="VF308_00600"
     CDS             <1..366
                     /locus_tag="VF308_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA/Hda family protein"
                     /protein_id="HEX7435182.1"
                     /translation="QQQAAFALFVEATTRGIPIVAAGSVPPVDLPLREDLRSRLGWGH
                     VFALQPLAEPEVRAALRREADRRGVFLSDEVMDYLLTRFARDLKHLMGQLDRLDAFAL
                     ANKRAITVPLLRQMLADEQ"
     gene            369..1079
                     /locus_tag="VF308_00605"
     CDS             369..1079
                     /locus_tag="VF308_00605"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX7435183.1"
                     /translation="MSTPAASGAPGAAPRNLCLFDLDDTLLPIDSDHAWGEFVIRLGW
                     VDEAEFRRTNDAFYAAYKLGRLDIHAYIAFATAPLRARSAEVISAAHGRFMREVILPA
                     VRPQALALVREHQARGDWIALVTATNDFVTGPIAQAFGIADLIAVRLEREAGATITGR
                     IVGTPSYRDGKVARVEEWLVEGGCSWGDFERISVYSDSMNDLPLLERGTDPVATNPSP
                     ALEAIARERGWRILKLFE"
     gene            1076..>2513
                     /gene="pcnB"
                     /locus_tag="VF308_00610"
     CDS             1076..>2513
                     /gene="pcnB"
                     /locus_tag="VF308_00610"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019701132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:1990817 - poly(A) RNA polymerase activity
                     [Evidence IEA];
                     GO_process: GO:0006378 - mRNA polyadenylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HEX7435184.1"
                     /translation="MIKKFIEKLLGKPGPAGVPKIPRGKRVEVPKSEHGIDPSLVDAH
                     AVKVVSTLAGAGFEAYIVGGAVRDLLLGLRPKDFDIATNATPEEVKGLFRRAFIIGRR
                     FRIVHVVFGRGRQDRGLSEVIEVSTFRASVDAAASEQVEGNEKTSKTAMAGKSHVVDA
                     SGRVLRDNVWGPQIEDAARRDFTINAMYYDPVREIVVDYHGGIKDAKKKLLRMIGDPA
                     TRYREDPVRIIRVVRFAAKLGFEIEPKTRAPIKEMAALLDNVPQSRTFDEMIKLLQTG
                     HALASIVELKKQGLHRGVFPVLDAALDEAERHDGREKFVQLALADTDRRVAEGKPVAP
                     SFMLASMLWHEVQGRWQHLTAGGEPAYSALQQAIDAVFDARIGDISGRGRLALDMREI
                     WMMQPRLERRVGNAALNLPEQPRFRAGLDFLRLRAESGEVDPELARWWEAFSLADAEA
                     RREMLAGARERDGARRVAAPAAPGGAARE"
BASE COUNT          390 a          864 c          871 g          388 t
ORIGIN      
        1 cagcagcagg cggcgttcgc gctcttcgtc gaagcgacga cgcgcggcat cccgatcgtc
       61 gccgccggaa gcgtcccgcc ggtcgacctg ccgctgcgcg aagatctgcg cagccgcctc
      121 ggttggggtc atgtgttcgc actgcagccg ctcgccgagc ccgaggttcg cgccgccctg
      181 cgtcgcgagg ccgaccggcg cggcgtgttc ctctccgatg aggtgatgga ctacctgctc
      241 acccgcttcg cgcgcgacct caagcacctg atggggcagc tcgaccggct cgatgcgttc
      301 gcgctggcga acaagcgcgc gatcacggtg ccgctgctca ggcagatgct ggccgacgag
      361 caatgaacat gagcacgccc gctgcaagtg gcgcgcccgg cgctgcgccg cgcaaccttt
      421 gcctcttcga cctcgacgac accctgctgc cgatcgattc cgaccacgcc tggggcgagt
      481 tcgtgattcg cctcggctgg gtcgacgagg ccgagttcag gcgcacgaac gacgcctttt
      541 atgccgccta caagcttggc cgcctcgaca ttcacgccta cattgccttc gccaccgcgc
      601 cgctgcgcgc gcgcagcgcc gaggtgatca gcgccgcgca tggccgtttc atgcgcgagg
      661 tcatcctgcc cgcggtgcgc ccgcaggcgc tggcgctggt gcgcgaacac caggcgcgcg
      721 gcgactggat cgcccttgtc accgcgacca acgatttcgt caccggcccg atcgcgcagg
      781 ccttcgggat cgccgatctg atcgcggtgc ggctcgagcg cgaggcaggc gctaccatca
      841 cgggccggat cgtcggcacg ccgagctacc gcgacggcaa ggtcgcgcgg gtggaagagt
      901 ggctggtcga gggcggctgc agctggggcg atttcgagcg catcagcgtc tattccgact
      961 cgatgaacga cctgccgctg ctcgagcgcg gcactgatcc ggtggcgaca aatccctctc
     1021 ctgcgctcga ggccatcgcg cgcgaacgcg gctggcgaat tctgaagttg ttcgaatgat
     1081 caagaaattc atcgagaagc tccttggcaa gccgggtccg gcgggcgtgc cgaaaatccc
     1141 gcgcggcaag cgcgtcgagg ttcccaagag cgagcacggc atcgacccct ccctcgtcga
     1201 cgcgcacgcc gtcaaggtcg tcagcaccct ggccggcgcc gggttcgagg cctacatcgt
     1261 cggcggcgcg gtgcgcgatc tgctgctcgg cctgcgcccc aaggatttcg acatcgccac
     1321 caacgcgacg cccgaggagg tgaaggggct gttccggcgc gccttcatca tcggccggcg
     1381 cttccggatc gtgcacgtgg tcttcggccg cgggcgtcag gaccggggct tgagcgaagt
     1441 gatcgaagtc tccacgtttc gcgcctctgt cgatgccgcg gcgtccgagc aggtcgaagg
     1501 caacgagaag acctccaaga cggcgatggc cggcaagagc catgtcgtcg acgcgagcgg
     1561 gcgggtgctg cgcgacaacg tctggggccc gcagatcgag gacgcggcgc gccgcgattt
     1621 cacgatcaac gcgatgtact acgacccggt gcgcgagatc gtggtcgact accacggcgg
     1681 catcaaggac gcgaagaaga agctcctgcg catgatcggc gacccggcga cgcgctatcg
     1741 cgaagacccg gtgcgcatca tccgggtggt ccgcttcgcg gccaagctcg gcttcgagat
     1801 cgagcccaag acccgcgccc cgatcaagga aatggcggcg ctgctcgaca acgtgccgca
     1861 gtcgcgcacc ttcgacgaga tgatcaagct gctgcagacc gggcacgcgc tcgcgagcat
     1921 cgtcgagctg aagaagcagg gcttgcaccg cggtgtcttc ccggtgctcg acgccgcgct
     1981 cgacgaagcc gagcgccacg acgggcgcga gaagttcgtc cagctcgcgc tcgccgacac
     2041 cgaccggcgc gtcgccgaag gcaagccggt cgcgccgagc ttcatgttgg cttcgatgct
     2101 gtggcacgag gtgcagggcc gctggcaaca cctgacggcg ggcggcgagc ccgcctactc
     2161 ggcgctgcag caggcgatcg acgccgtatt cgatgcccgc atcggcgata tctcagggcg
     2221 tgggcggctc gccctcgaca tgcgcgagat ctggatgatg cagccgcgcc ttgaacgccg
     2281 cgtcggcaat gcggcgttga atctgcccga gcagccgcgt tttcgcgcgg gtctcgattt
     2341 cctgcgcctg cgcgccgagt cgggcgaggt cgatccggaa ctggcgcgct ggtgggaagc
     2401 cttctcgctg gccgatgccg aggcgcgccg tgagatgctt gccggcgcgc gcgagcgcga
     2461 cggtgcccgg cgtgtcgccg cgccggcggc gccgggcggt gcggcgcgcg aag
//
LOCUS       DASVHM010000035         3030 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1012138, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000035 DASVHM010000000
VERSION     DASVHM010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3030
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1012138"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..1035
                     /locus_tag="VF308_00615"
     CDS             151..1035
                     /locus_tag="VF308_00615"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEX7435185.1"
                     /translation="MDRDASFLRAWTEAACPPAHDLAPDPGRGELRFRSVWISDVHLG
                     TPGCQAVALLDFLKQVECRTLFLVGDIVDGWQLRRNWFWPQAHNDVVQKLLRKARKGT
                     RVIFVPGNHDEFARRYVGHNFGGIEVVEDWIHETADGRRLWVTHGDLFDGVIQCAKWL
                     AHFGDHLYEFTLRLNRHLNSLRARMGLPYWSLSRYLKLKVKRAVSYVGDFETAVAREA
                     RKRGVQGVVCGHIHHAELREIDGITYANDGDWVESLTALVEHADGRLEVIDWALHPAA
                     RGHAAPARIRSVAEAVNA"
     gene            1032..2075
                     /locus_tag="VF308_00620"
     CDS             1032..2075
                     /locus_tag="VF308_00620"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEX7435186.1"
                     /translation="MKIVIVTDAWSPQVNGVVTILVDLRERLTAAGHEVAVIEPSGFQ
                     RVRCPGYPEIGLAWGAGREVARRLDSARPEAIHVATEGPLGLAARAYCRRRNLPFTTA
                     FHTRFPEFLAAAFRFPASWGYAALRRFHAASAGVMVPSSGTAEILGRHGFRNLRRWSH
                     GIDLELFQPAPGASLGLPRPVFLFVGRIAAEKNLEAFLRLDLPGSKVVCGGGPLLERY
                     RREHPAVHWYGPVARHRLPGIYAAADSFVYPSRTDTFGLVMLEALACATPVAAYPVAG
                     PLDVVGTSDGGVLDLDLRSAALRSLSIPREQARARALEFDWDRVCRQFVGHLAPIRRW
                     KPDPGFPAIARFA"
     gene            complement(2088..>3030)
                     /locus_tag="VF308_00625"
     CDS             complement(2088..>3030)
                     /locus_tag="VF308_00625"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HEX7435187.1"
                     /translation="HGFWLSTLSKAARGDRLARGEEHAVAVKAQAPRLDRAMQGPAIL
                     QTVMAACLDQVVANAGEIADGNRDDEMIHQLRVGLRRMRTAARELDSLCAGFEREWEA
                     PVVAAFEALGEYRDRDTVAQSIEAQLSAAGSPEPTLPPLHAAAPDPVGVVRDKDFQCA
                     LLDALRFTLDPARSDPGAGPALAPRAALRRIRSRLAKLHTLLKPSAKEFEQLDEAAQH
                     RVRKRLKRLRYLAELVGPLHETAKVERYLDKLRPAQDALGAHIDLLVGLKMAGEAANH
                     GDAQAWFNVGWLTAQLSASARRCSRSLARASAARRFW"
BASE COUNT          412 a         1053 c         1054 g          511 t
ORIGIN      
        1 agacgcccgc gcgcaggtca atttcggccg ccacggcatg aagtggctcg cgctctcgat
       61 cgccaagctg acgccggtcg actgagggtt cacgcaaggg tcacggcggc gacaccgtgc
      121 ggtcatcgac ggcggtgacg atgcaggtcc atggatcgcg atgcctcttt cctgcgcgca
      181 tggaccgaag cggcttgccc gcccgcccac gaccttgccc ccgatcccgg gcgcggcgag
      241 ctgcgctttc gcagcgtctg gatctcggat gtgcatctcg gcacccccgg ttgccaggcc
      301 gtcgcgctgc tcgacttcct gaagcaggtc gaatgccgga ccctctttct ggtcggcgac
      361 atcgtcgacg gctggcagct gcggcgcaac tggttctggc cgcaggccca caacgatgtc
      421 gtgcagaagc tgttgcgcaa ggcgaggaag ggaacgcgcg tgattttcgt gcccggcaac
      481 cacgacgagt tcgcgcggcg ctatgtcggc cacaacttcg gcggcatcga agtggtcgaa
      541 gactggatcc acgagaccgc cgacgggcgc cggctctggg tgacgcatgg cgacctgttc
      601 gatggcgtga tccagtgtgc gaaatggctc gcccacttcg gcgaccacct gtacgagttc
      661 acactgcgcc tgaatcgcca cctcaattcg ctgcgcgcgc gcatgggcct gccctattgg
      721 tcgctgtcgc gctacctgaa gttgaaggtc aagcgggcgg tcagctacgt cggcgacttc
      781 gagaccgccg tcgcgcgcga ggccaggaag cgcggcgtgc agggcgtggt gtgcggccat
      841 atccaccatg ccgagttgcg cgagatcgac ggcatcacct acgccaacga tggcgactgg
      901 gtcgagagcc tcaccgcgct ggtcgagcac gccgacggcc ggctcgaagt gatcgactgg
      961 gcgctccacc cggcggcgcg cggacacgcc gcgccggcgc gaatccggtc cgtggcggaa
     1021 gcggtcaacg catgaagatc gtgatcgtca ccgatgcctg gtcgccgcag gtcaacggcg
     1081 tcgtgacgat cctggtcgat ctgcgcgagc gcctgacggc cgcaggccac gaggtcgcgg
     1141 tgatcgagcc ttctgggttt caacgcgttc gctgccccgg ctatccggaa atcgggctgg
     1201 cctggggcgc gggccgcgag gtcgctcgcc gcctcgattc ggcgcggccg gaggcgatcc
     1261 acgtcgcgac cgaggggccc ctcggccttg cggctcgcgc ctactgccgg cgccgaaacc
     1321 tgccgttcac caccgcattc cacacgcgct ttcccgagtt tctcgcggcc gcgttccgct
     1381 tccctgcgag ttggggctat gcggccctgc gccgctttca cgcggcctcg gccggcgtga
     1441 tggtgccgtc atcggggacc gccgagatcc tcggccggca cggctttcgc aacctgcggc
     1501 gctggtcgca cggcatcgac ctcgaactgt tccagccggc gccgggcgcg agcctggggt
     1561 tgccgcggcc ggtgttcctg ttcgtcggcc gcatcgcggc ggagaagaat ctggaggcct
     1621 tcctcaggct cgacctgccg ggatcgaagg tcgtctgcgg tggtggcccc ttgctcgaac
     1681 gctatcgtcg cgagcatccg gccgtgcact ggtacggtcc ggtggcgcgc caccgactcc
     1741 ccggcatcta tgccgcggcc gattccttcg tgtacccgag ccgcaccgat accttcgggc
     1801 tggtgatgct cgaggccctg gcctgcgcca cgccggtggc ggcgtacccc gtggccggcc
     1861 cgctcgatgt cgtcggaacg tccgacggcg gcgtgctcga cctcgacttg cgcagcgccg
     1921 cgctgcgttc cttgagcatc ccgcgcgaac aggctcgcgc ccgtgcgctc gagttcgatt
     1981 gggaccgcgt ctgccgccag ttcgtcggcc acctcgcgcc gatccggcgt tggaagcccg
     2041 atccgggatt ccccgcgatc gcgcgcttcg cgtgacgcgc ccggggccta ccagaagcgg
     2101 cgtgccgcgg acgcgcgcgc cagggacctg ctgcagcgcc ttgcgctcgc ggacaattgc
     2161 gcggtgagcc agccgacgtt gaaccacgcc tgcgcatcgc cgtgatttgc ggcctcgccc
     2221 gccatcttca ggccgacgag cagatcgatg tgcgcgccga gcgcatcctg cgccggccgc
     2281 agcttgtcga ggtagcgctc gaccttggcc gtctcgtgga gcgggccgac gagttcggcc
     2341 agatagcgca gccgcttcag gcgcttgcgc acgcggtgct gcgcagcttc atcgagttgt
     2401 tcgaattcct ttgcgctcgg cttgagaagg gtgtggagct tggccaagcg tgaacggatt
     2461 cggcgcagcg cagcgcgtgg agcgagggcg gggccggcac cggggtcgct gcgcgccgga
     2521 tcgagcgtga atcgcagggc atcgagcagc gcgcattgga agtctttgtc gcggaccacg
     2581 cccaccggat cgggggccgc cgcgtgcagc ggcggcaagg tgggttcggg cgatcccgcg
     2641 gccgagagtt gcgcctcgat cgattgcgcc acggtgtctc ggtcgcgata ttcgccgagg
     2701 gcctcgaacg cggcgacgac gggagcctcc cattcgcgct cgaagcctgc acacaggctg
     2761 tcgagctcgc gcgccgccgt tctcatgcgc cgcaggccca cgcgcagctg gtggatcatc
     2821 tcgtcgtcgc ggttcccgtc ggcgatttcg ccggcatttg cgacgacctg gtcgaggcag
     2881 gccgccatca ccgtctgcag gatcgccggg ccctgcatcg cgcggtcgag gcggggcgct
     2941 tgcgccttca ccgcgactgc gtgctcctcg ccgcgcgcga gacgatcgcc gcgcgccgcc
     3001 ttcgacaggg tgctcagcca gaagccgtgt
//
LOCUS       DASVHM010000036         8127 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_290708, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000036 DASVHM010000000
VERSION     DASVHM010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 8127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8127
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290708"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..161)
                     /locus_tag="VF308_00630"
     CDS             complement(<1..161)
                     /locus_tag="VF308_00630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEX7435188.1"
                     /translation="MKKLNKVASLLATAALATSMSGAFAQTVDNWVSGTGLPWKNGTN
                     ELCWRDGYWT"
     gene            428..3076
                     /gene="gyrA"
                     /locus_tag="VF308_00635"
     CDS             428..3076
                     /gene="gyrA"
                     /locus_tag="VF308_00635"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013518702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEX7435189.1"
                     /translation="MTQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPV
                     HRRALFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHML
                     VDGQGNFGSVDGDNPAAMRYTEIRLAKIAHEMLADLDKETVDFGPNYDGSEKEPLVLP
                     SRLPNLLVNGSGGIAVGMATNIPPHNLNEVVDACQHLLRNPAATIDELMEIIPAPDFP
                     TAGIIHGLAGVRDGYRTGRGRVVMRAKCHFEDIDRGQRQAIIVDEIPYQVNKKNLLER
                     MAELVHEKKLEGISHIQDESDKSGMRVVIELKRGEVPEVVLNNLYKQTQLQDTFGINM
                     VALIDGQPKLCNLKNLIDIFLEHRREVVTRRTVFELRKARERGHVLEGLAVALANIDE
                     FIETIKASPTPPVAKAALMSKSWDSSMVREMLSRVGTDTPGGRDAYRPEGLPARYGIQ
                     PDGLYRLSDEQAGEILQMRLQRLTGLEQDKILGEYKEVMEQIADLLGILATPARVTTI
                     ISEELDAIKQEFGQTKVGARRSVIEHHALDLGTEDLITPTDMVVTLSHTGYIKSQALS
                     EYRAQRRGGRGKQATQTKEDDWVEQLFVANTHDYILCFTNRGRVYWLKVWEVPTGARA
                     SRGRPIVNMFPLQPGEKVNVVLPLTDGFRSFPPDHHVFMATAQGVVKKTALDEFSNPR
                     KAGIIAVDLDEGDFLIGAALTDGHHDVMLFSDGGKAVRFDEEDVRSLGRNARGVRGMS
                     LEEGQSVIALLVAEDETQSVLTATENGFGKRTSIIEYTRHLRGGKGMIAIVQSERNGK
                     VVAATLVRADDEIMLITDRGVLVRTRVAEIRELGRATQGVTLIALDNASKLIGLQRIV
                     ENDATVDATLEPTGSAGEEPPAEENL"
     gene            3076..3678
                     /locus_tag="VF308_00640"
     CDS             3076..3678
                     /locus_tag="VF308_00640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2059 domain-containing protein"
                     /protein_id="HEX7435190.1"
                     /translation="MKRLMMAALLAGAALANAQTATKKELVQKLLVLQQPGIEQVARG
                     LVERPALQMMQEAGLVLQRQVAPDKREAMGKQVEAEVKKYIDESVPLMRERAIKLAPT
                     TIGPVLEEKFSEEELKQLIAWFESPFNKKYQQLGPEMQNAFIQKLIVEARPVVDPKIQ
                     ALDGRLRTLFGAPPAAAASSAPSAPISTRAPASAPKAAAK"
     gene            3694..4800
                     /gene="pheA"
                     /locus_tag="VF308_00645"
     CDS             3694..4800
                     /gene="pheA"
                     /locus_tag="VF308_00645"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEX7435191.1"
                     /translation="MPESPRPSDPGLAGLRDRIDAVDRELLGLLNRRAGLAQQVGELK
                     KRDGSVAFRPEREAEVIDGLKRANCGPLQTESVAPIWREIMSACRALETPTRVAYLGP
                     SATFSEEAAIGFFGSSIVKVPCANFDEVFHATSAGSADFGVVPVENSSEGVVTRSLDL
                     FLTTPLIIIGETSLYVRHNLLRRSNSLEGIVAVCAHPQALAQCHGWLSHHLPNVERRP
                     VSSNAEGARLASADATLAGIAGQRAASEFGLHVVAPAIQDDAHNRTRFAILAHPHQHP
                     QPKASGHDCTSLVVSVANRPGAVHDMLVPLKKHGVSMTRFESRPARSGQWEYYFYIDL
                     QGHPDQPEVAAALAELSSVCAFFKLLGAYPIDVH"
     gene            4820..5704
                     /locus_tag="VF308_00650"
     CDS             4820..5704
                     /locus_tag="VF308_00650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019577671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase/arogenate dehydrogenase
                     family protein"
                     /protein_id="HEX7435192.1"
                     /translation="MFNQLGVIGCGLMGGSFALALKRAGLVRRVVGYSKSPSTTEAAR
                     RLGIIDTVAESALLAVSGSDIVLIAVPVAATEATFKAIRHLVEPGVLIMDVGSTKRDV
                     VDAARRVLKDRVASFVPAHPIAGKEVSGIEHADAALYTGRQVILTPIAKTAPELVQKA
                     TDTWAAIGAQVLRMTPENHDAAFAAVSHLPHVLAFAFFNAVSGQPSGRDYLSLGGPGF
                     RDFTRIAASNPAVWRDILMSNREEILKQTQRFRHALDAMEHVINTANTEALEALIRSA
                     SEARSGWQMNASTPHTAR"
     gene            5734..7746
                     /locus_tag="VF308_00655"
     CDS             5734..7746
                     /locus_tag="VF308_00655"
                     /EC_number="2.5.1.19"
                     /EC_number="2.7.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-phosphoshikimate
                     1-carboxyvinyltransferase/cytidylate kinase"
                     /protein_id="HEX7435193.1"
                     /translation="MYTTRFLDLPPLRRAAGTVHLPGSKSISNRVLLLAAISSGTTVV
                     EELLDSDDICVMQAALRQLGCVVEPHGVDLHITGLGGRLKTREAALFLGNAGTAMRPL
                     TATLAVLAATQGGRFELSGVARMHERPIGDLVDALRQLGCTIDYLGANGFPPLRLSAS
                     SAPLDAGAPIRVRGDVSSQFLTALLLALPLVQSRADAVIQVEGELISKPYVEITLNLM
                     ARFGIDVRREGWLRFSIPAGTAYRSPGRIRVEGDASSASYFIAAGAIAATAEPVRIVG
                     VGLDSIQGDIRFVDAARAMGAQVVGGPGWLEVRRGRFPLDAITLDCSDIPDAAMTLAA
                     MALFAGGTTLLTHIASWRVKETDRIAAMAAELRKCGASVVEGPDFLEVSAPAAWRAPV
                     IETYDDHRIAMCLSLAAFNGAIPGAAPLPVRIADPRCVAKTFPDYFETLFQLAEAAPD
                     AIPVITVDGPTASGKGTLAGAVAAALGYHFLDSGALYRATALAALQAGVAAEDEPALA
                     VLAARLDLRFDGERIALAGADVTEALRREAVGALASRVSAWPQVREALRHWQLAFRRL
                     PGLVADGRDMGTVIFPDAQMKVYLTASAAHRAERRWKQLSSKGISANIDSLRADLELR
                     DARDQNRSVAPLKPAADALLLDNSALSIEASVEVVLTAWERRRPFA"
     gene            7885..>8127
                     /locus_tag="VF308_00660"
     CDS             7885..>8127
                     /locus_tag="VF308_00660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEX7435194.1"
                     /translation="MTQTQVATTPGVESFAAMFEESLTRSEMRSGEVITAEVIRVEHS
                     FVVVNAGLKSEAYVPIDEFKNDQGELEVQPGDFVSVA"
BASE COUNT         1415 a         2825 c         2648 g         1239 t
ORIGIN      
        1 gtccagtaac cgtcacgcca gcacagttcg ttggtgccgt tcttccacgg cagaccggtg
       61 ccactgaccc agttgtctac cgtctgcgcg aacgcgccag acatggaagt tgcgagggca
      121 gcggttgcca agagcgacgc caccttgttc agtttcttca tgattctcct ctcgagggat
      181 agcacagtag tgttttgcaa aacgtccgaa ccggaatcgg aaagtactgg taacccccga
      241 cagaacgggc gcaaccaccg accgagttat tgtgccatag ggctttgagt cggccgggtt
      301 ttggccgtag gacgaacgct cgtgcgaggc aatgttgctt cggtgctaca gcccggcgca
      361 cttagaatgc cggccacgcc gaacgctcgt tcgcgccctc ctttcccggg ccagcccgca
      421 cactccgatg acccagttcg ccaaggaaac gctgcccatc agcctcgagg aggagatgcg
      481 gcggtcgtac ctcgactacg cgatgagcgt gatcgtgggc agggccctgc ccgacgcgcg
      541 agacggcctg aagccggtcc accggcgcgc gctcttcgcg atgcacgagc tcaacaacga
      601 ctggaaccgg ccgtacaaga agtcggcccg catcgtcggc gacgtgatcg gcaaatatca
      661 tccgcacggc gaccagtcgg tctatgacac gatcgtgcgc atggcgcagg atttctcgat
      721 gcgccacatg ctcgtcgatg gccagggcaa cttcggctcg gtcgacggcg acaacccggc
      781 ggcgatgcgc tacaccgaga tccgcctcgc caagatcgcg cacgagatgc tcgccgatct
      841 cgacaaggag acggtcgact tcggtcccaa ctacgacggc agcgagaagg agccgctggt
      901 gctgccgtcg cggctgccga acctgctcgt caacggctcg ggcggcatcg cggtcggcat
      961 ggcgacgaac attccgccgc acaacctgaa cgaagtggtg gatgcctgcc agcacctgct
     1021 gaggaacccc gcagcgacga tcgacgaatt gatggaaatc atcccggcgc cggattttcc
     1081 gacggccggc atcatccacg gcctggccgg ggtgcgcgac ggctaccgca ccggccgcgg
     1141 ccgcgtggtc atgcgcgcca agtgccactt cgaagacatc gatcgcggcc agcgtcaggc
     1201 gatcatcgtc gacgagatcc cgtaccaggt gaacaagaag aacctgctcg aacgcatggc
     1261 cgagctggtg cacgagaaga aactcgaagg catcagccac atccaggacg agtccgacaa
     1321 gtcgggcatg cgcgtcgtca tcgaactcaa gcgcggcgag gtgcccgagg tcgtgctcaa
     1381 caacctctac aagcagacgc agctgcagga caccttcggc atcaacatgg tcgcgctgat
     1441 cgacggccag ccgaagctct gcaacctgaa gaacctgatc gacatcttcc tcgaacatcg
     1501 tcgcgaagtc gttacgcggc gcacggtgtt cgagctgcgc aaggcgcgcg aacgcggcca
     1561 cgtgctcgaa ggcctggccg tcgcgctcgc caacatcgac gagttcatcg agacgatcaa
     1621 ggcctcgccg acgccgccgg tcgcgaaagc ggcgctgatg agcaagagct gggattcgtc
     1681 gatggtgcgc gagatgctgt cgcgcgtcgg caccgacacg ccgggcggcc gcgacgcgta
     1741 tcgcccggaa ggcctgccgg cgcgctacgg gatccagccc gacgggctct accggctctc
     1801 ggacgagcag gccggcgaga tcctgcagat gcgcctgcaa cgcctgaccg ggctcgagca
     1861 ggacaagatc ctgggcgagt acaaggaggt gatggagcag atcgccgatc tgctcggcat
     1921 cctcgcgacg ccggcccggg tcacgaccat catttccgaa gaactcgacg caatcaagca
     1981 ggagttcggg cagaccaagg tcggcgcgcg ccgcagcgtg atcgagcacc acgcgctcga
     2041 cctcggcacc gaagacctga tcacgccgac cgacatggtc gtgacgctct cgcacaccgg
     2101 ctacatcaag agccaggcgt tgtcggaata ccgcgcgcaa cggcgcggcg ggcgcggcaa
     2161 gcaggcgacg cagaccaagg aagacgactg ggtcgaacag ctcttcgtcg ccaacacgca
     2221 cgactacatc ctctgcttca cgaaccgcgg ccgggtctac tggctcaagg tgtgggaagt
     2281 gccgacgggc gcacgcgcct cgcgcggccg cccgatcgtc aacatgttcc cgctccagcc
     2341 gggcgagaag gtcaacgtgg tgctgccgct caccgacggc ttccgcagct ttccgcccga
     2401 tcaccacgtg ttcatggcga cggcccaggg cgtcgtcaag aagaccgcgc tcgacgaatt
     2461 cagcaacccg cgcaaggccg gcatcatcgc ggtcgacctc gacgagggcg acttcctgat
     2521 cggtgcggcg ctcaccgacg gccaccacga cgtgatgctg ttcagcgatg gcggcaaggc
     2581 ggtgcgcttc gacgaggagg acgtgcgctc gctcggacgc aatgcccgcg gggtgcgcgg
     2641 catgtcgctc gaagagggcc agagcgtcat cgccctgctc gtcgccgaag acgagaccca
     2701 gagcgtgctc accgccaccg agaacggctt tggcaagcga acctcgatca tcgaatacac
     2761 ccgtcacctg cgcggcggca agggcatgat cgcgatcgtc caaagcgagc gcaacggcaa
     2821 ggtggtcgcg gccacgctgg tgcgcgcgga cgacgagatc atgctgatca ccgaccgcgg
     2881 cgtgctggtc cgtacgcgcg tggccgagat ccgcgagctc ggccgcgcga cccagggcgt
     2941 gaccctgatc gcgctcgaca acgccagcaa gctgatcggc ctgcaacgca tcgtcgagaa
     3001 cgacgccacc gtcgatgcga ccctcgaacc caccggcagc gcgggcgaag agccgccagc
     3061 cgaggagaac ctctgatgaa gcgattgatg atggcggcgc tgctggcggg cgccgcgctt
     3121 gcgaatgcgc agacggcgac caagaaggaa ctggtccaga agttgctcgt gctgcagcag
     3181 cctggcatcg agcaggtcgc gcgcggcctg gtcgagcgcc cggcgctgca gatgatgcag
     3241 gaggccggcc tggtgttgca gcgccaggtc gcgccggaca agcgcgaagc catgggcaag
     3301 caggtcgagg ccgaggtgaa gaagtacatc gacgaatcgg tgccgctgat gcgcgagcgc
     3361 gcgatcaagc tcgcgccgac gacgatcggg ccggtcctcg aggagaaatt cagcgaagag
     3421 gaattgaagc agctgatcgc ctggttcgaa tcgccgttca acaagaaata ccagcagctc
     3481 gggcccgaga tgcagaacgc gttcatccag aagctgatcg tcgaagcgcg cccggtcgtc
     3541 gacccgaaga tccaggcgct cgatggccgg ctgcgcacgc tcttcggagc gccgcccgcc
     3601 gcggccgcat cgtcggcgcc ctcggcgccg atttcgacac gggcgccggc ctcggcgccg
     3661 aaggcggcgg cgaagtgaag gacggcgttc gccatgcctg agtcgccgcg gccgtccgac
     3721 cccggcctcg ccgggttgcg cgaccggatc gacgccgtcg atcgcgagtt gctcgggttg
     3781 ctgaaccgcc gcgccggatt ggcgcagcag gtcggcgaat tgaagaagcg cgacggttcg
     3841 gtcgcctttc gtcccgagcg cgaagccgag gtcatcgacg gcctgaaacg cgccaactgc
     3901 ggcccactgc agaccgagag cgtcgcgccg atctggcgcg agatcatgtc agcgtgccgc
     3961 gcactcgaga cgcccacccg ggtggcctac ctcggccctt cggccacgtt cagcgaggaa
     4021 gccgccatcg ggttcttcgg ctcctccatc gtcaaggtgc cgtgcgccaa tttcgacgag
     4081 gtcttccacg ccaccagcgc cggctcggcc gatttcggcg tggtgccggt cgagaattcg
     4141 agcgagggtg tggtgacgcg ctcgctcgat ctcttcctga ccaccccgct catcatcatc
     4201 ggcgagacca gcctgtacgt gcgccacaac ctgctgcggc gcagcaattc gctcgagggc
     4261 atcgtcgcgg tctgcgccca cccccaggcc ctagcccagt gccacggctg gctcagccac
     4321 cacctgccca acgtcgagcg gcgcccggtc tcgagcaatg ccgaaggcgc gcggctggcg
     4381 agcgccgatg ccacgctcgc gggcatcgcc ggccagcgcg cggccagcga gttcggcctg
     4441 cacgtcgtcg cgcccgccat ccaggacgac gcgcacaacc ggacacgctt cgcgatcctc
     4501 gcgcacccgc accagcatcc gcagcccaag gccagcgggc acgattgcac gagcctggtg
     4561 gtgtcggtgg ccaaccgccc cggagcggta cacgacatgc tcgtgccgct gaagaaacac
     4621 ggcgtgtcga tgacacgctt cgagtcgcga ccggcgcgct cgggtcagtg ggagtactac
     4681 ttctacatcg acctgcaggg gcatcccgat cagcccgaag tggccgccgc acttgcagaa
     4741 ctgagctctg tttgcgcctt cttcaagctg ctcggcgcct atccgatcga cgtccattga
     4801 ccgaaagcgc cgtcttccca tgttcaatca gctcggtgtg atcggttgcg gcctgatggg
     4861 cggctcgttc gcgctggcgc tcaagcgcgc cggcctggtc cggcgcgtcg tcggctacag
     4921 caagtcgccc tcgacgaccg aggcggcgcg ccggctcggc atcatcgaca cggtggccga
     4981 atcggcgctg ctcgcggtgt ccgggtccga catcgtgctg atcgcggtcc ccgtcgccgc
     5041 gaccgaggcc accttcaagg cgatccgcca cctggtcgag ccgggcgtcc tgatcatgga
     5101 tgtcggatcg acgaagcgcg acgtggtcga cgccgcgcgg cgcgtgctca aggatcgcgt
     5161 cgcgtcgttc gtcccggcgc acccgatcgc gggcaaggaa gtctcgggca tcgaacatgc
     5221 cgacgcggcg ctctacaccg gccgtcaggt catcctgacg ccgatcgcga agaccgcgcc
     5281 cgaactggtc cagaaggcga ccgacacctg ggccgcgatc ggcgcgcagg tgctgcgcat
     5341 gacacccgaa aaccacgacg cggctttcgc cgcggtgagc cacctgccgc acgtgctcgc
     5401 gttcgccttt ttcaatgcgg tgtcgggcca gccgtcgggc cgcgactacc tgtctctcgg
     5461 cggccccggg tttcgcgact tcacccgcat cgccgccagc aacccggccg tatggcgcga
     5521 catcctgatg tccaatcgcg aagagatcct gaagcagacg cagcgcttcc gccacgcgct
     5581 cgatgcgatg gagcatgtca tcaacaccgc gaacaccgag gcgctcgagg cactgatccg
     5641 cagcgcctcc gaggctcgca gcggctggca gatgaacgcg tcgacgccgc acacggcccg
     5701 ctgagccccg tccggtacgc gcgtcgccgt cgcatgtaca cgacccgctt tctcgatctg
     5761 ccgccgctgc ggcgcgccgc cggcacggtg cacctgcccg gctcgaaaag catctcgaac
     5821 cgggtgctgc tgctcgcggc catcagctcg ggcacgacgg tcgtcgagga gctgctcgac
     5881 tccgacgaca tctgtgtgat gcaggccgcg ctgcgccagc tcggctgcgt ggtcgagccg
     5941 cacggagtcg acctgcacat caccggcctc ggcggccgcc tcaagacccg cgaggcggcg
     6001 ctctttctcg gcaacgccgg gaccgcgatg cgaccgctca ccgcgaccct cgcagtgctc
     6061 gccgcgacgc agggcggccg cttcgagctg agcggcgtcg cgcgcatgca cgaacgcccg
     6121 atcggggacc tggtcgatgc gctgcgccaa ctcggttgca cgatcgacta cctcggcgca
     6181 aacggcttcc cacccctgcg cctcagcgcg agcagtgcgc cgctcgatgc cggcgcgccg
     6241 atccgcgtgc gcggcgacgt ctcgagccag ttcctcaccg cgctcctgct cgccttgccg
     6301 ctggtgcaaa gccgtgccga tgccgtgatc caggtcgaag gcgaactgat ctcgaaaccc
     6361 tacgtcgaga tcacgctgaa cctgatggca cgcttcggca tcgacgtgcg gcgcgaaggc
     6421 tggctgcgat tttcgatccc ggccggcact gcctatcgat cgcccggccg catccgggtc
     6481 gagggcgacg cgtcgtcggc gtcctatttc atcgccgccg gcgcgatcgc cgccactgcc
     6541 gagccggtgc gcatcgtcgg tgtcgggctc gactcgatcc agggcgacat ccgcttcgtc
     6601 gatgcggcgc gtgccatggg cgcgcaggtg gtcggcgggc cgggctggct cgaagtgcgg
     6661 cgcggccgct ttccgctcga tgccatcacg ctggactgca gcgatattcc cgacgccgcg
     6721 atgaccctcg cggccatggc gctcttcgcc ggcgggacga cgcttctcac ccacatcgcc
     6781 agctggcgcg tcaaggaaac cgatcgcatc gcggcgatgg cggccgaact gcgcaagtgc
     6841 ggggcgagcg tcgtcgaagg ccccgacttc ctcgaagtga gcgcgccggc cgcgtggcgc
     6901 gcgcccgtca tcgaaaccta cgatgaccat cgcatcgcga tgtgcctgtc gctggctgca
     6961 ttcaacggcg ccatccccgg ggcggcgcca ctgccggtgc gcatcgccga cccgcgctgc
     7021 gttgccaaga cctttccgga ctatttcgaa accctgttcc aactggccga agccgcgccg
     7081 gacgcgatcc cggtcatcac ggtcgacggg cccaccgcat ccggcaaggg aaccctcgcc
     7141 ggcgccgtcg ccgcggcgct cggctatcac ttcctcgact cgggcgcgct ctatcgcgcg
     7201 accgcgctgg cggcgctgca agcgggcgtc gccgccgaag acgaacccgc cttggccgtg
     7261 ctcgccgccc ggctcgacct gcgcttcgac ggcgagcgga tcgcgctcgc aggcgccgac
     7321 gtgaccgagg cgctgcgccg cgaggcggtc ggcgcgctcg cgtcgcgcgt ctcggcctgg
     7381 ccgcaggtgc gcgaagcgct gcgccactgg cagctggcgt ttcgccgcct gcccgggctg
     7441 gtcgccgacg gccgcgacat gggcaccgtg atctttccgg acgcgcaaat gaaggtctat
     7501 ctcaccgcga gcgccgcaca ccgggccgag cggcgctgga agcagttgag ttcgaagggg
     7561 atttccgcta atattgatag tcttcgcgcc gacttggagc ttcgcgacgc ccgggatcag
     7621 aaccgcagcg tcgccccctt gaagccggct gcggatgcgc tgctcctgga caactcggcc
     7681 ctttccatcg aagcctcggt agaggtggtg ctgacagcct gggaacggcg caggcctttc
     7741 gcgtgataac ccggtcgcgg ggttcactcg aagggctgca agggcccgac gctttccctc
     7801 ctgtgccgct tcattccgaa ggcacgccag agcgccggat cgacaatcaa cccgcagccg
     7861 ccgtgctgca acggaaaaat ctgcatgact caaactcaag ttgccaccac ccctggcgtg
     7921 gaatcgttcg ccgccatgtt cgaggaatcg ctgacgcgct ccgaaatgcg cagcggcgaa
     7981 gtcatcaccg ccgaggtgat ccgggtcgaa cacagtttcg tggtggtcaa cgcaggcctc
     8041 aagtccgagg cctatgttcc gatcgatgaa ttcaagaacg accagggcga gctcgaagtc
     8101 cagcccggcg atttcgtctc ggtggcg
//
LOCUS       DASVHM010000037         6733 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1300620, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000037 DASVHM010000000
VERSION     DASVHM010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6733
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1300620"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..947
                     /locus_tag="VF308_00665"
     CDS             <1..947
                     /locus_tag="VF308_00665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013955262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEX7435195.1"
                     /translation="GASVHARISGVADHEALDDEHALAIGRQIVASLAWKKPDQPWDR
                     LPVRPPAVATPDPDEDATDDPFGIYGAVSPDLRRGYDVHEVIARIVDGSEFHEFKQGY
                     GETLVCGFAHLDGYPVGILANNGVLFSESAQKGAHFIELCCQRKVPLVFLQNVTGFMV
                     GRKYEAEGIAKHGAKMVTAVSTAQVPKFTIIIGGSFGAGNYGMCGRAYSPRFLWMWPN
                     ARIGVMGGEQAASVLATVRRDGIEAKGGAWSAAEEAAFKKPILDQFEVQAHPYFASAR
                     LWDDGIIDPASTRRVLALGLSASLNAPIGEPKFGIFRM"
     gene            955..2088
                     /locus_tag="VF308_00670"
     CDS             955..2088
                     /locus_tag="VF308_00670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007867468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7435196.1"
                     /translation="MESIYLTPEHELLREQVARFIAREVEPHALAWEEAGCTPREVLR
                     KMGDAGLLGLMYASEHGGAEADALTNLVFAEALSQSTFGGFIITVLVHTDMASPHLHH
                     AGTPQQKAKYMPGVTAGRTITAVGITEPGAGSDVAGIRTSARRDGAEWVLNGTKLFIT
                     NGVHADLYFIAAKTTSARHDMSMFIVEKGTPGFSVGRSLKKSGWLSSDTAELVFENCR
                     IPAANLLGEENKGFYSVMKNFQTERIALSAMAVGHSTRALAMTLEYVRDRQAFGASLF
                     DKQAIRQRLAMLDAKTRAARSFMYHCAWRVTQAHDVVQEVSMLKALTGELVNEVVQTC
                     QQFHGGMGYMRDTAIERLWRDARVLAIGGGATEVMLDEVAKRY"
     gene            2093..2632
                     /locus_tag="VF308_00675"
     CDS             2093..2632
                     /locus_tag="VF308_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019426702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEX7435197.1"
                     /translation="MEASNSHRPDAPSWNTHFAALARYDVWALTRLYEHIDRLPEDEY
                     RRDAGLFFKSVHGTLNHLLVAEHQVWFPRFAEGVSNRIALNTELEPDRDALRERLLAA
                     TARWAPLIAAWPAARFDGRLEYTTTRGVAQSLPFALTLAHVFNHGTHHRGQITAAITA
                     MGHAGPEIDLVWMLQAESP"
     gene            2640..3257
                     /locus_tag="VF308_00680"
     CDS             2640..3257
                     /locus_tag="VF308_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4126 domain-containing protein"
                     /protein_id="HEX7435198.1"
                     /translation="MNLDTTHLLALAAALGWASGLRLYAVLFLTGMAGTLGWVDLPEG
                     LRLLQSPLMLGASGFMLFIEFFADKIPGVDTLWDMVHTLVRIPAGAALAAAVFGADQA
                     TWAILAALLGGTLAATSHVAKATTRAAVNTSPEPFSNLALSLLGDAAVPGALWLAFAH
                     PVLALVAVAVATLSMLALIALLMRFLRGLWSRLRGRERSNVGQTV"
     gene            3274..3951
                     /locus_tag="VF308_00685"
     CDS             3274..3951
                     /locus_tag="VF308_00685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435199.1"
                     /translation="MFVGHYSASLVAKRVAPRLPLWALLLAAQAVDVAWAVFILIGVE
                     NVRIVPGHTATNPLDLYHMPYTHSLPAAVLWSVAAALLTWVWARRSEPPARARRLAWV
                     LGAVVFSHWWLDLIVHVPDLPLWDDRIKVGMGLWNYVVPATALELALLIGAAFWLRAD
                     RVTWRQAGGRALGIFVAVLVIFHAVNLFGPPPPSVAAVGIAGLAVYLLVAAGGGWLER
                     RATRHDH"
     gene            3970..6012
                     /locus_tag="VF308_00690"
     CDS             3970..6012
                     /locus_tag="VF308_00690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019576415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl/propionyl/methylcrotonyl-CoA carboxylase
                     subunit alpha"
                     /protein_id="HEX7435200.1"
                     /translation="MFKKILIANRGEIACRVAATARRMGVRTVAVYSDADAGAKHVLA
                     CDEAVRIGPAAPKESYLRGDRILEAAQATGAEAIHPGYGFLSENEQFAEACAAAGLVF
                     IGPPASAIKAMGLKAEAKRLMGRAGVPLVPGYHGADQNPELLQREADRIGYPVLIKAS
                     AGGGGKGMRTVAAAEAFAAALASCRREAMGSFGDDAVLIERYVTKPRHIEIQVFGDMH
                     GNFVHLFERDCSVQRRHQKVLEEAPAPGMSEARRREMGEAAVAAARAVGYVGAGTVEF
                     IAEPAPASAGKTGAGMAHGDLRFFFMEMNTRLQVEHPVTEAITGLDLVEWQLRVASGE
                     ALPLSQAQLRIHGHAIEARICAENPDAGFLPATGRLEVYRMPPALEFECGVDAPVRVD
                     GGVREGDSITPHYDPMIAKLIVWGRDREQALARLDAALALTHIVGVQTNVAFLRRVVQ
                     SPSFAQADLDTALIERERARLFKQPGLPLEVAAAGLVAHALAAERLQEDADPWSRRDG
                     WRLHGSALRRFDIEVDGTHHVFRLERARGGLQVLVGNAERWGFRASARGSDTHDVVLG
                     KRRYALTVYVTGQRVSIFAPDGSAVVDGFDPIAHAGDHAAEAGRLTAPMPGKVIAFLA
                     QPGQKVVAGQALAVMEAMKMEHTIASPRDGTIEELLYLVGDQVDEGGELLRLVAES"
     gene            6039..>6733
                     /locus_tag="VF308_00695"
     CDS             6039..>6733
                     /locus_tag="VF308_00695"
                     /EC_number="4.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004419 - hydroxymethylglutaryl-CoA lyase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA lyase"
                     /protein_id="HEX7435201.1"
                     /translation="MLPARVTLVEVGPRDGLQNERQPVTTAQKVELVRRLQAAGLCDI
                     EVTSFVSPKWVPQMADNAAVMAALERKPGVRYSVLTPNLKGFEAALASRPDEIVVFGA
                     ASEAFSRRNINCSIEESIERFAPVVAAAHAAGIKVRSAVSVALGCPYQGEVSADEVER
                     VVVLLKEIGVEHCGIADTIGVGTPRRVQAVMERALKHYPLAEVSGHFHDTYGQAIGAD
                     HCGIADTIGVGTPA"
BASE COUNT          998 a         2357 c         2372 g         1006 t
ORIGIN      
        1 gcggcgcgtc cgttcacgcg cggatctctg gcgtcgccga ccacgaggcg ctggatgacg
       61 agcacgcgct ggctatcggg cgccagatcg tcgccagcct ggcgtggaag aagcccgacc
      121 aaccctggga ccgactgccc gtgcggccgc ccgccgtcgc cacgccggac ccagatgagg
      181 acgcgaccga cgaccctttc gggatctacg gcgcggtcag ccccgatctg cgccgcggct
      241 acgacgtcca cgaggtgatc gcgcggatcg tcgacggctc cgagttccac gagttcaagc
      301 agggctacgg cgagacgctc gtgtgcggct tcgcgcacct cgacggctac ccggtcggca
      361 tcctcgccaa caacggcgtg ctgttctccg aatcggcgca gaagggcgcg catttcatcg
      421 agctgtgctg ccagcgcaag gtgccgctgg tcttcctgca gaacgtcacc ggcttcatgg
      481 tcggtcgcaa gtacgaggcc gagggcatcg ccaagcacgg cgcgaagatg gtcaccgcgg
      541 tctcgaccgc gcaggtgccg aagttcacga tcatcatcgg cggcagcttc ggcgccggca
      601 actacggcat gtgcgggcgc gcctattcgc cgcgctttct gtggatgtgg ccgaacgcgc
      661 gcatcggcgt gatgggcggc gagcaggcgg ccagcgtgct cgccacggtg cgccgcgacg
      721 gcatcgaggc caaggggggc gcctggagcg cggccgagga ggcggcgttc aagaaaccga
      781 tcctcgacca gttcgaggtc caggcgcatc cctatttcgc cagcgcgcgc ctttgggacg
      841 acggcatcat cgacccggcc tcgacccggc gcgtgctcgc gctcggcctt tcggcgagcc
      901 tcaacgcacc gatcggcgag ccgaagttcg gcatcttcag gatgtagggg cttcgtggaa
      961 agcatctacc tcacccccga acacgagctg ctgcgcgagc aggtcgcgcg cttcatcgcg
     1021 cgcgaagtcg agccgcatgc gcttgcctgg gaagaggcgg gctgcacgcc gcgcgaggtg
     1081 ctgcgcaaga tgggcgacgc cggtctgctc ggcctcatgt acgcgagcga acacggcggc
     1141 gccgaggccg atgcgctcac caacctcgtc ttcgccgaag cgctgtcgca gtcgaccttc
     1201 ggcggcttca tcatcacggt gctggtgcac accgacatgg cgagcccgca cctgcatcac
     1261 gccggcacgc cgcaacaaaa ggcgaagtac atgccgggcg tgaccgcggg gcgcacgatc
     1321 accgcggtcg gcatcaccga gccgggcgcc ggttccgacg tcgccgggat ccgcacgagc
     1381 gcgcggcgcg acggcgccga gtgggtgctg aacggcacca agctcttcat caccaacggc
     1441 gtccacgccg acctctattt catcgccgcg aagaccacga gcgcgcgcca cgacatgtcg
     1501 atgttcatcg tcgagaaggg cacgcccggg ttcagcgtcg ggcgctcgtt gaagaagtcg
     1561 gggtggctct cgtccgacac cgcggagctg gtgttcgaga actgccgcat cccggccgcg
     1621 aacctgctcg gcgaggagaa caagggcttc tactcggtga tgaagaactt ccagaccgag
     1681 cggatcgcgc tttccgcgat ggcggtcggg cactcgacgc gtgcgctcgc gatgacgctc
     1741 gagtacgtgc gcgaccgcca ggccttcggg gccagcctgt tcgacaagca agccatccgg
     1801 cagcgcctcg cgatgctcga cgcgaagacg cgcgcggcgc gctcgttcat gtaccactgc
     1861 gcatggcgcg tgacgcaggc gcacgacgtg gtgcaggagg tctcgatgct gaaggcgctg
     1921 accggcgaac tcgtcaacga ggtcgtgcag acctgccagc agttccacgg cggcatgggc
     1981 tacatgcgcg acaccgcgat cgagcggctc tggcgcgacg cgcgggtcct cgcgatcggc
     2041 ggcggcgcga ccgaggtcat gctcgacgag gtcgcgaagc ggtactgacg acatggaagc
     2101 gagcaattcc caccggcccg acgcgccgtc ctggaacacg catttcgccg cgctggcgcg
     2161 ctacgacgtc tgggccctga cgcgcctcta cgagcacatc gaccggctgc ccgaagacga
     2221 gtaccgccgc gatgccggcc tcttcttcaa gagcgtgcac ggtacgctga accacctgct
     2281 ggtggccgag caccaggtct ggttcccgcg ttttgccgag ggcgtgtcga atcgcattgc
     2341 actgaacacc gagctcgagc ccgaccgcga cgccttgcgc gagcgcctgc tcgctgccac
     2401 cgcgcgctgg gcgccgctga tcgcggcgtg gcccgcggcg cgcttcgacg gccggctcga
     2461 gtacacgacg acgcgcggcg ttgcgcagtc gctgccgttc gcgctcaccc tcgcccacgt
     2521 cttcaaccac ggcacccacc accgcggcca gatcaccgcg gcgatcacgg cgatgggcca
     2581 cgcgggcccg gagatcgacc tggtgtggat gctgcaggcc gaaagcccct gagccggcga
     2641 tgaacctcga caccacgcac ctgctcgcac tcgccgccgc tctcggctgg gccagcggcc
     2701 tgcgcctcta tgcggtgctg ttcctgaccg gcatggcggg caccctcggc tgggtcgacc
     2761 tgccggaggg actgcggctg ctgcagagcc cgctgatgct cggcgcgagc ggcttcatgc
     2821 tcttcatcga gttcttcgcc gacaagattc ccggtgtcga cacgctctgg gacatggtcc
     2881 acacgctggt gcgcattccg gccggtgccg cgctcgcggc cgcggtgttc ggcgccgatc
     2941 aggcgacgtg ggcgatcctt gcggcgctgc tcggcggcac gctcgccgcg acgagccacg
     3001 tcgcgaaggc gacgacgcgg gccgccgtca acacctcgcc cgaacccttc tcgaacctcg
     3061 cgctgtcgct gctcggcgac gcggccgtgc cgggcgcact ctggctcgcg ttcgcccatc
     3121 cggtgctggc gctcgtcgcc gtcgcggtcg cgacgctgtc gatgctcgcg ctcatcgccc
     3181 tgctgatgag gttcctgcgc gggctctggt cgcgcctgcg cggccgcgag cgcagcaacg
     3241 tcggccagac ggtctagggc ccggggagac gcgatgttcg tcggtcacta cagcgcaagc
     3301 ctggtcgcca agcgcgtcgc gccgcggctg ccgctgtggg cgctcctgct ggccgcgcag
     3361 gcggtggacg tggcgtgggc ggttttcatc ctgatcggcg tcgagaacgt ccgaatcgtc
     3421 cccggccata ccgcgacgaa tccgctcgac ctgtaccaca tgccgtacac gcacagcctg
     3481 cccgccgccg tgctctggtc cgtcgccgcg gcgctgctga cctgggtctg ggccaggcgt
     3541 tcggagccgc ccgcgcgagc gcggcggctg gcctgggtgc tgggcgcggt ggtgttctcg
     3601 cactggtggc tcgatctgat cgtgcacgtg cccgacctgc cgctctggga cgaccgcatc
     3661 aaggtcggca tgggactgtg gaactacgtc gtgcccgcga ccgcgctcga actcgcgctg
     3721 ctgatcggcg ctgcgttctg gctgcgcgcc gatcgcgtca cttggcggca ggccggaggc
     3781 cgggcgctcg gcatcttcgt ggcggtgctc gtcatcttcc acgccgtcaa cctgttcggt
     3841 ccgccgccgc cgtcggttgc cgccgtcggc attgcgggcc ttgccgtcta cctgctcgtc
     3901 gccgccggcg gcggctggct cgagcggcgc gcgacgcggc acgatcacta acgtctcccg
     3961 gaaacacgca tgttcaagaa gatcctgatt gccaaccgcg gcgagatcgc ctgccgggtc
     4021 gctgcgacgg cgcggcggat gggcgtccgc acggtcgcgg tgtattccga cgccgatgcc
     4081 ggcgcgaagc acgtgctcgc ctgcgacgag gcggtgcgga tcgggcctgc cgcgccgaag
     4141 gagagctatc tgcgcggcga ccgcatactt gaagcggccc aggccaccgg cgccgaggcg
     4201 atccaccccg gctacggctt tctgagcgag aacgagcagt tcgccgaagc gtgcgcagcg
     4261 gccggcctcg tcttcatcgg cccgccggcc tcggcgatca aggcgatggg tctcaaggcc
     4321 gaggccaagc gcctgatggg cagggccggg gtgccgctgg tgccgggcta tcacggcgcc
     4381 gaccagaacc ccgaattgct gcaacgcgag gccgatcgca tcggctatcc ggtgctgatc
     4441 aaggccagcg cgggcggcgg cggcaagggc atgcgcacgg ttgcggccgc cgaggccttc
     4501 gcggccgcgc tcgcgtcgtg caggcgcgag gcgatgggga gcttcggcga cgacgcggtg
     4561 ctgatcgagc gctacgtcac caagccgcgc cacatcgaga tccaggtgtt cggcgacatg
     4621 cacggcaact tcgtccacct gttcgagcgc gattgctcgg tgcagcggcg tcaccaaaag
     4681 gtgctcgagg aagcgcccgc gcccggcatg agcgaagcgc gccggcgcga gatgggcgag
     4741 gcggcggtgg ccgccgcgcg ggcggtcggc tacgtcggcg cgggcacggt cgaattcatc
     4801 gccgagccgg cgccggcaag cgcgggcaag accggcgccg gcatggcgca tggcgacctg
     4861 cgcttcttct tcatggagat gaacacgcgg ctccaggtcg agcacccggt gaccgaggcg
     4921 atcacggggc tcgacctcgt cgaatggcaa cttcgcgtcg cgtcgggcga agcgttgccg
     4981 ctttcgcagg cccagctgcg catccacggc catgcgatcg aagcgcgcat ctgcgccgag
     5041 aacccggacg ccggcttcct cccggcgacc ggccggctcg aggtctaccg gatgccgccg
     5101 gcgctcgagt tcgagtgcgg ggtcgacgcg ccggtgcggg tcgacggcgg tgtgcgcgag
     5161 ggcgattcga tcacgcccca ctacgacccg atgatcgcca agctgatcgt ctggggccgc
     5221 gaccgcgagc aggcgctggc gcggctcgac gcggcgctcg cgctgacgca catcgtcggg
     5281 gtccagacca acgtcgcatt cctgcgccgc gtggtgcaga gtccgtcgtt cgcgcaggcc
     5341 gatctcgaca ccgcgttgat cgagcgcgag cgcgcgcggc tcttcaagca gcccggcctg
     5401 ccgctcgaag tggccgcggc cggcctggtc gcgcatgcgc tcgccgccga acggcttcag
     5461 gaagacgccg acccgtggtc gcgtcgcgac ggctggcgcc tgcacggcag cgcgctgcgc
     5521 cgcttcgaca tcgaggtgga cggcacgcat catgtcttca gactcgagcg cgcccgcggc
     5581 gggcttcagg tgctggtggg caacgccgag cgctggggtt ttcgggcgag cgcgcgcggc
     5641 tcggacaccc acgacgtggt gctcggcaaa cggcgctatg ccctcaccgt gtacgtcacc
     5701 ggccagcgcg tcagcatctt cgccccggac ggctcggcgg tcgtggacgg gttcgatccg
     5761 atcgcgcatg ccggcgacca cgccgccgaa gccgggcgac tcaccgcgcc gatgcccggc
     5821 aaggtcatcg ccttcctggc gcaaccgggg cagaaggtcg tggccggtca ggcccttgcg
     5881 gtgatggagg cgatgaagat ggagcacacg atcgcgtcgc cgcgcgacgg caccatcgaa
     5941 gaactcctct acctcgtcgg cgaccaggtc gacgagggcg gtgaactgct ccgactcgtg
     6001 gcagagtcct gatgccaccc cacgaaccga ggcccaccat gctgcctgca agagtcacgc
     6061 tcgtcgaagt cggtccgcgc gacgggctgc agaacgaaag gcagccggtc acgacggcgc
     6121 agaaggtcga actcgtgcgg cgcctgcagg ccgcgggcct ctgcgatatc gaggtcacga
     6181 gcttcgtcag tccgaagtgg gtgccgcaga tggccgacaa cgccgcggtg atggcggcgc
     6241 tcgagcgcaa gccgggcgtg cgctattcgg tgctgacgcc gaacctgaag ggcttcgagg
     6301 cggcgctcgc cagccggccc gacgagatcg tcgtcttcgg cgcggcgagc gaggcgttca
     6361 gccggcgcaa catcaactgc tcgatcgagg agtcgatcga gcgtttcgcc ccggtcgtcg
     6421 ccgcggcgca cgcggccggc atcaaggtgc gttcggcggt gtcggtcgcg ctcggctgcc
     6481 cgtaccaggg cgaggtctcg gccgacgagg tcgagcgcgt cgtcgtgctc ctgaaggaga
     6541 tcggcgtcga gcattgcggc atcgccgaca cgatcggcgt cggcacgccc cgacgggtgc
     6601 aggcggtcat ggaacgcgcc ctgaagcact acccgctcgc cgaggtgagc ggccatttcc
     6661 acgacaccta cggccaggcg atcggcgccg accactgcgg catcgccgac acgatcggcg
     6721 tcggcacgcc ggc
//
LOCUS       DASVHM010000038         2315 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_940432, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000038 DASVHM010000000
VERSION     DASVHM010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2315
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_940432"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..521)
                     /locus_tag="VF308_00700"
     CDS             complement(<1..521)
                     /locus_tag="VF308_00700"
                     /inference="COORDINATES: protein motif:HMM:NF024923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HEX7435202.1"
                     /translation="MALLALLPLQGCRWPWESEGANALVLSGTVDAHEVDLGFQIGGR
                     IARLLSDEGRAVQVGQVIAELDPTDLRLAAERARAQAESAGKSLAALKAGARAQELRA
                     AQAAVAQAQADKSLADQQVVRTQQLVDQNFVSPDQMDRARSAAAAAAARVDQASANLS
                     LLRAGARKEDIERA"
     gene            834..1061
                     /locus_tag="VF308_00705"
     CDS             834..1061
                     /locus_tag="VF308_00705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435203.1"
                     /translation="MNPLKPVSASLPALALFGCAAVEPVDANHREVRETMTGSNIPRR
                     DPQSMPDAKILGKDAIEDLIHSNGPRGKWGN"
     gene            1066..1290
                     /locus_tag="VF308_00710"
     CDS             1066..1290
                     /locus_tag="VF308_00710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435204.1"
                     /translation="MRVVLGALSLLLVLVIVGALAKRQLQALNEGTATRSSSAASQAR
                     VEVPAIQQQIRDDVTRALQQGADRSAHAEP"
     gene            1295..1852
                     /gene="tadA"
                     /locus_tag="VF308_00715"
     CDS             1295..1852
                     /gene="tadA"
                     /locus_tag="VF308_00715"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HEX7435205.1"
                     /translation="MSADEGAMRLALDQAQNALLVGEVPVGAVIMRETPAGRQVVATG
                     YNRPVTEHDPTAHAEIVALRHAATLLGNYRLPDCELYVTLEPCAMCAMALLHARVKRV
                     VFGAFDPKTGAAGSILNLFEERRLNHHTALVGGVLAEASGRLLQDFFAERRRHFRERR
                     DAALDAGGAEIPAGEATELEPPLPR"
     gene            1855..>2315
                     /locus_tag="VF308_00720"
     CDS             1855..>2315
                     /locus_tag="VF308_00720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HEX7435206.1"
                     /translation="MTTLCLYSPSGVLVRAAPLRRAARRLAALGFEVGIDAAALLKYQ
                     RFAGDDAARLDAIHRVAAGAPGIAMATRGGYGLTRLLDAIDWKLIGRSIERGTRWVGH
                     SDMTALQLGLLAHAQGITWAGPLACDDFGRGAEAGAVDDVTEACFLEAMSGA"
BASE COUNT          357 a          791 c          806 g          361 t
ORIGIN      
        1 gcccgctcga tatcttcctt gcgggcgccg gcgcgcagca gcgacaggtt cgcgctggcc
       61 tggtccacgc gggccgccgc cgcggcggcg gcgctgcgcg cgcggtccat ctgatcgggc
      121 gagacgaagt tctggtccac caactgctgc gtacgcacga cctgctggtc ggccaggctc
      181 ttatcggcct gcgcctgcgc gaccgcggcc tgcgcggcgc gcagttcctg cgctcgtgcc
      241 cccgccttca gcgcggccag cgacttgcct gccgactcgg cttgggcgcg ggcacgttcg
      301 gcggccagcc gcaggtcggt gggatcgagt tcggcgatga cctggccgac ctgcaccgca
      361 cggccttcgt cgctgagcag acgcgcgatg cggccaccga tctggaagcc cagatcgacc
      421 tcgtgcgcat ccacggtccc agagagcacg agtgcgttgg cgccttcgga ttcccatggc
      481 caccggcagc cctgcaaggg cagcagggcg agcagcgcca ctgcaaggag acgaacgcgg
      541 agcatgatgc gacgtggacc ccggcgggat gtatctcgga cctgcctcgc catttcccgc
      601 tttggtcggc gtgcgagacg tctccgctcg cttctgctgc cgagaggagc gctggtatct
      661 agagcaccat gatggagcac ttcttcggcg cgagaattgc ctcagatcaa tccaagcgaa
      721 agcgaggcgc gcgcaaagcg gtattggccc atccgcagca gagggggtag aaatgatcga
      781 atgggagtga cctcccttat cattcgcaga caagtccgaa aggaagagac atgatgaatc
      841 ctctcaagcc cgtttcggcg tctcttccgg cacttgcact cttcggctgc gcggccgtcg
      901 agcccgtcga cgcgaatcac cgcgaggtcc gcgaaaccat gacgggcagc aacattccga
      961 ggcgcgatcc ccaatcgatg cccgacgcga agattctcgg caaggacgcg atcgaggacc
     1021 tgatccactc gaacgggccg cgcggcaagt ggggcaattg agcgaatgag ggtcgtcctg
     1081 ggcgcactct cgctgctgct ggtgctcgtc atcgtcggcg cgcttgcgaa gaggcagctc
     1141 caggcgctga acgaggggac cgcgacgcgt tcgagcagcg cggcgagcca ggctcgggtc
     1201 gaggtgccgg ccattcagca gcaaatccgg gacgacgtga cccgcgccct gcagcagggg
     1261 gccgaccgca gcgcccacgc cgagccatga ttcgatgagc gccgacgagg gcgcgatgcg
     1321 cctcgcgctc gaccaggcgc agaacgccct gctcgtgggc gaggtgccgg tcggtgccgt
     1381 gatcatgcgc gagacgccgg ccggtcgtca ggtcgtggcg accggctaca accgccccgt
     1441 gaccgagcac gatcccacgg cgcacgcgga gatcgtggcc ttgcgtcatg cggccacgct
     1501 gctcggcaac taccggctgc ccgactgcga gctctacgtc acgctcgagc cttgcgcgat
     1561 gtgcgcgatg gccttgctgc acgcccgtgt caagcgcgtc gtcttcggtg ccttcgatcc
     1621 gaagaccggc gctgccggct cgatcctcaa cctgttcgag gagcgccgcc tgaaccatca
     1681 cacggctctc gtgggtggcg ttctcgccga ggcgagcggc cggctgttgc aggatttctt
     1741 cgccgagcgg cgccgccatt tccgcgagcg ccgcgacgcg gcgctcgatg cgggcggcgc
     1801 cgaaatcccg gcgggcgaag cgaccgagct cgagccgccg ctgccgcgct gaagatgacg
     1861 acgctctgcc tctattcgcc aagcggcgtg ctggtgcggg cggcaccgtt gcggcgcgcc
     1921 gcacggcgcc tcgcggcgct cggattcgag gtcgggatcg acgcggccgc gctgctgaaa
     1981 taccagcgtt tcgccggcga tgatgccgct cggctcgatg cgatccatcg cgtggcggcg
     2041 ggtgcccccg gcatcgcgat ggccacgcgc ggcggctatg ggctgacgcg cctgctcgac
     2101 gcgatcgact ggaagctcat cgggcgcagc atcgagcgcg gcacgcgctg ggtcggccac
     2161 agcgatatga ccgcgctgca actcggtttg ctcgcgcatg cgcaaggcat cacgtgggcc
     2221 ggcccgctgg cctgcgacga cttcggccgc ggcgccgagg ccggcgctgt cgacgacgtc
     2281 accgaggcgt gtttccttga agcgatgagc ggggc
//
LOCUS       DASVHM010000039         1915 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_868616, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000039 DASVHM010000000
VERSION     DASVHM010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_868616"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VF308_00725"
     CDS             complement(<1..191)
                     /locus_tag="VF308_00725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbiX/SirB N-terminal domain-containing protein"
                     /protein_id="HEX7435207.1"
                     /translation="MRPGLLLFAHGARDPRWSAPFEDVADRIRSAAPALPVELAFLEF
                     MAPTLTEAGAGLVASGCDTV"
     gene            complement(188..1297)
                     /gene="lptG"
                     /locus_tag="VF308_00730"
     CDS             complement(188..1297)
                     /gene="lptG"
                     /locus_tag="VF308_00730"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HEX7435208.1"
                     /translation="MRTVRRLFYADIVSAVAFVALAFLSLFFFIDFVDEIGNIGARGT
                     TILNAAAYSLLLLPAHFYELIPIAVLIGAIFALARLAQTSQYTILRTGGLGPWRALWL
                     LISLGLLFALLTYVVGDYVAPRSERYASELQAARKGGIKLGQSGAWLKDHANTPEGER
                     GYSVSIGSAEGGALLHDVRIFEFDADGRLLRRIVAARAHVGSDSAWTLRDVRITRWIE
                     GGAAAPRAPEQEFAEVVWPSTLSAAVVAAAVLPASTMSTVDLYRYIGHLANNEQAAQS
                     QQIQFWKRAFYPFACLVMMGLALPFAYLSARTGGVSLKVFGGIMLGISFVLLNNVAGH
                     LGLLRNWTPWIVALAPSALYMLLSFAAFSWLVRYR"
     gene            complement(1305..>1915)
                     /locus_tag="VF308_00735"
     CDS             complement(1305..>1915)
                     /locus_tag="VF308_00735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEX7435209.1"
                     /translation="DGRTGRNVFILSTQGTSEAVTTARSGRIEVEGDDRFLVLGRGQR
                     NEENGATGEKGLSRFESYRVLAGERILSSAANLPPKARATLDLLLTPTAPNQGELVWR
                     LGLLLGGANLVLLGIGLSASNPRRASNWNLLFALLGFVVYYNVINLSQAWVAGAKVGM
                     GTALVAVHGGAFVLALSLLWWREHANSRIGWPARAAAMPAGG"
BASE COUNT          323 a          638 c          693 g          261 t
ORIGIN      
        1 accgtgtcgc atccgctcgc caccaggccc gcaccggcct cggtcagggt cggcgccatg
       61 aattccagga acgcgagttc gaccggcaat gccggtgcgg cgctgcggat gcgatcggcc
      121 acgtcctcga acggcgccga ccagcgcggg tcgcgggccc cgtgggcaaa aagcaggagc
      181 ccgggcctca tcggtagcgc accagccagc tgaaggcggc gaacgacagc agcatataga
      241 gcgcgctcgg cgccaaagcg acgatccacg gcgtccagtt gcgcaacagg cccaggtggc
      301 cggcgacgtt gttgagcagg acgaagctga tgcccagcat gatgccgccg aagactttca
      361 ggctcacgcc gccggtgcgc gcgctgaggt aggcgaaggg cagggcgagg cccatcatga
      421 cgaggcaggc gaaggggtag aacgcccgct tccagaactg gatctgctgg ctttgcgcgg
      481 cctgctcgtt gttggccaga tggccgatgt agcggtacag atcgacggtc gacatcgtgc
      541 tcgccggaag aaccgccgcg gcgacgaccg ctgccgacag ggtgctcggc cagaccactt
      601 cggcgaactc ctgctcgggg gcgcgcggtg cggcggcgcc accctcgatc cagcgcgtga
      661 tgcgcacatc gcgcagggtc caggccgagt cgctgccgac atgcgcgcgg gccgcgacga
      721 tgcggcgcag gaggcggccg tcggcatcga attcgaagat gcgcacgtcg tgcaggagcg
      781 cgccgccctc ggccgagccg atgctcaccg aatagccgcg ctcgccctcg ggcgtgttcg
      841 cgtgatcctt cagccatgcc cccgactggc cgagcttgat gccgcccttg cgggccgcct
      901 ggagctcgct cgcgtagcgc tcgctgcgcg gcgccacgta gtcgccgacg acataggtca
      961 gcagcgcgaa cagcaggccc aggctgatga gcagccacag cgcccgccac ggcccgaggc
     1021 cgccggtgcg aaggatcgtg tattgcgatg tctgggccag gcgcgccagc gcaaagatgg
     1081 cgccgatcag caccgcgatc gggatcagct cgtagaagtg cgccggcagc agcagcagcg
     1141 aataggccgc cgcattcagg atggtggtgc cgcgcgcgcc gatgttgccg atttcgtcga
     1201 cgaagtcgat gaagaagaag agcgacagga acgccagggc gacgaaggcg accgccgaca
     1261 cgatgtcggc gtagaagagt cggcgcacgg tgcgcatgcg tgcgctaccc gcccgccggc
     1321 atcgcggcgg cgcgtgccgg ccagccgatg cggctgttcg catgctcgcg ccaccacagc
     1381 agcgagagcg cgagcacgaa cgcgccgccg tgcaccgcga cgagcgcggt gcccatcccg
     1441 accttggcgc cggcgaccca ggcctgcgac aggttgatga cgttgtagta gacgacgaag
     1501 ccgagcaatg cgaagagcag gttccagttg ctcgcgcggc gcgggttcga cgccgaaagc
     1561 ccgatgccga gcaatacgag gttcgcgccg ccgagcagca ggccgaggcg ccagacgagt
     1621 tcgccctggt tcggcgcggt cggggtgagc agtaggtcga gcgtggcgcg cgccttcggc
     1681 ggcaggttgg cggcgctcga gaggatgcgt tcgccggcca gcacgcgata gctctcgaag
     1741 cgcgagaggc ccttttcgcc ggtcgccccg ttctcttcgt tgcgctggcc gcggccgagc
     1801 acgaggaagc ggtcgtcgcc ttcgacttcg atgcgtccgc tgcgcgcggt cgtgaccgct
     1861 tccgaggtgc cctgggtcga gagaatgaag acgttgcgcc cggtgcgccc gtcct
//
LOCUS       DASVHM010000040         2123 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1012823, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000040 DASVHM010000000
VERSION     DASVHM010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1012823"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..549)
                     /gene="truA"
                     /locus_tag="VF308_00740"
     CDS             complement(<1..549)
                     /gene="truA"
                     /locus_tag="VF308_00740"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEX7435210.1"
                     /translation="MRIALGLSYRGSAYRGWQSQPGGDTVQDHLEAALASFVDRPVRV
                     VCAGRTDAGVHALNQVVHLDTEVERVPVSWVRGTNRYLSRDIAVQWAQPVAETFNARF
                     SALGRRYVYRLLESPVRPGLESASVGWTFRRLDGAAMEAAAGVLIGEHDFSALRSSEC
                     QAVTAVRTLRTIAITRRGAYWRF"
     gene            complement(594..>2123)
                     /locus_tag="VF308_00745"
     CDS             complement(594..>2123)
                     /locus_tag="VF308_00745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FimV/HubP family polar landmark protein"
                     /protein_id="HEX7435211.1"
                     /translation="DARAAELAKNVDQLKKLSGAASAAAAAGVAPAASAMVAQPSTTV
                     VVPPPVVVAQAPAPAPVPVVPAPAVVATVPVTAQPARPASAALPVVESASALAVSPPV
                     VRPPASAMAAAKPASRLVPGAKPAAEEPGLIGSLMADNPLLLGVGALVVALLAGFGIY
                     RLAKRGKKDSGETSFLESRLQPDSFFGASGGQRIDTRDAAGSSSSMTYSLSQLDAIGD
                     VDPVAEADVYLAYGRDLQAEEILKEAMRSSPERLAIRTKLLEVYAKRRDTKGFELLAT
                     QLFALTRGEGEDWAKAQQLGAEIDPDNPMFQPGGVPVEPVRGGEVAELLGASTLPQTL
                     VPVPSQYGDSLPAPATVDSAFGELDLDLDNPEIGHPTTPGALDSTQAFPPDSDLGHDR
                     FVSTTHKMPLVPNEPQPDKRDEPLSFDMSGFSIDLDKPAAAPAPAPAAAAAVAVADAD
                     LPSIEGDGTHDPMVRKLELAEEFRQIGDKDGARDLLREVLAKASGTTRSKAQGMLDDL
                     G"
BASE COUNT          337 a          731 c          754 g          301 t
ORIGIN      
        1 gaagcgccaa taggcgccac ggcgcgtgat cgcgatcgtt cgcagggttc gcaccgccgt
       61 cacggcctgg cactcggacg agcgcagcgc gctgaaatcg tgctcgccga tcagcacccc
      121 cgcggccgcc tccatcgccg caccgtcgag ccgacggaag gtccagccga cgctggcgga
      181 ctcgagcccg ggccgcaccg gcgactcgag cagccgatag acgtagcgtc ggcccagcgc
      241 gctgaagcgc gcattgaaag tctcggcgac cggctgcgcc cattgcacgg cgatgtcgcg
      301 cgacaggtat cgattggtgc cgcgcaccca cgagacgggg acgcgctcga cctcggtatc
      361 gaggtgcacc acctgattga gggcgtgcac gccggcatcg gtgcgacccg cgcagaccac
      421 ccggaccggc cggtcgacga agctcgcgag tgccgcttcg aggtgatcct gcacggtatc
      481 gccgccgggc tggctctgcc agccgcgata ggcggaaccc cggtaagaca ggccgagcgc
      541 gatcctcacg acgggccccg gtcagtgtcg gcccgggccg gggcctgccc cgctcagccg
      601 aggtcgtcca gcatgccctg ggctttgctg cgcgtcgtgc ccgaggcctt ggccagcact
      661 tcgcgcaaca gatcgcgcgc gccatccttg tcgccgatct gacggaactc ctcggccagt
      721 tcgagcttac gcaccatcgg gtcgtgggtg ccgtcgcctt cgatggaagg gaggtcggcg
      781 tccgcaaccg caaccgcagc cgcagctgcg ggcgcaggag caggcgcagc ggcaggcttg
      841 tcgagatcga tcgagaagcc ggacatgtcg aaggacagcg gctcgtcgcg cttgtcgggc
      901 tgtggctcgt tcggcacgag cggcatcttg tgcgttgtcg aaacgaaacg atcgtggccc
      961 aagtccgaat cgggtgggaa cgcctgggtc gaatcgagcg cgcccggggt cgtgggatgg
     1021 ccgatctcgg gattgtcgag gtccaggtcg agctcgccga aagcgctgtc gacggtggcc
     1081 ggagccggca acgaatcgcc atattgcgac ggaaccggaa ccaaggtttg gggcagcgtg
     1141 ctcgccccca gcagctcggc aacctcgccg ccgcgaaccg gttcgaccgg caccccgccc
     1201 ggctgaaaca tcggattgtc gggatcgatt tcggcgccga gctgctgcgc cttggcccaa
     1261 tcctcgccct ccccgcgggt cagtgcgaag agctgcgtcg cgagcaattc gaagcccttg
     1321 gtgtcgcgcc gcttcgcata gacctcgagc agcttggtgc ggatcgcgag gcgctccgga
     1381 ctgctgcgca tcgcctcctt gaggatttcc tcggcctgca ggtcacgccc gtaagcgagg
     1441 tagacgtcgg cctcagcgac cggatcgaca tcgccgatcg catcgagctg gctcagcgaa
     1501 tacgtcatcg acgacgaact gccggcggcg tcacgcgtgt cgatgcgctg gccgccgctc
     1561 gcgccgaaga aggagtcggg ctggagccgg ctttccagga aagaggtctc gccgctgtcc
     1621 ttcttgccgc gcttggcgag gcggtagatc ccgaatccgg cgagcagcgc gaccacgagc
     1681 gcgccgacac cgagcaggag cgggttgtcg gccatcagcg agccgatcag gccgggctcc
     1741 tcggctgcgg gtttcgcgcc gggcaccagc cgcgatgccg gcttcgcagc ggccatcgcg
     1801 ctggccggcg gccgcacgac cggcggagaa acggccagcg ccgaagcgct ctccacaacc
     1861 ggcagcgcgg cgctggccgg gcgggccggt tgcgcggtca cgggaacggt agccacgacg
     1921 gccggggcgg gcacgacggg aacaggtgca ggtgccggcg cctgtgccac gaccaccggg
     1981 ggcggcacga cgacagtcgt cgagggctgc gcgaccatcg ccgacgcggc cggcgcgacg
     2041 ccggcagcag cagcggcaga cgcagcaccc gacagcttct tcagctggtc gacgtttttc
     2101 gccagttcgg cggcgcgggc atc
//
LOCUS       DASVHM010000041         4112 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_724214, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000041 DASVHM010000000
VERSION     DASVHM010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4112
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724214"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..343
                     /locus_tag="VF308_00750"
     CDS             <1..343
                     /locus_tag="VF308_00750"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEX7435212.1"
                     /translation="FGTVKVSANPLSWIGFLLLSMANVAMQLVEFVSKTVSHGMRLFG
                     NMYAGELIFLLIALLGGAFTLSVGGFVLALLHIAAGTVWAIFHILIITLQAFVFMMLT
                     LVYIGQAHDSH"
     gene            405..668
                     /gene="atpE"
                     /locus_tag="VF308_00755"
     CDS             405..668
                     /gene="atpE"
                     /locus_tag="VF308_00755"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEX7435213.1"
                     /translation="MELIGLVAIAAGLIIGLGALGACVGVGIMGSKYLESAARQPELM
                     GVLQTKVFLLLGLIDASFIIGTGIALWFTTANPFLAQIANLPK"
     gene            745..1215
                     /locus_tag="VF308_00760"
     CDS             745..1215
                     /locus_tag="VF308_00760"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEX7435214.1"
                     /translation="MSITFTFIIQLIVFLILAWFTMKFIWPPITVALDERANKIREGL
                     SAADTAKAELATANKRVEEQLSAARTDATQRLADAERLAQSMIEEAKGRASDEGAKII
                     AAAKAEAQQESLKAREALREQVAALAVKGAEQILRREVDAGVHADLLGRLKVEL"
     gene            1219..1764
                     /locus_tag="VF308_00765"
     CDS             1219..1764
                     /locus_tag="VF308_00765"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003065404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEX7435215.1"
                     /translation="MAELATIARPYAEALFKADGVADAGALAAELQGLADVADDPQLR
                     QYADNPKASAEQVFDLVTSVAQRPGSAALSAPAKNLLRIVIDNGRLAALPDIAAQFHA
                     LVNARSGTSDALVQSAFPIEPRQLDDVVAALERRFGRKLNASVVIDPELIGGIRVVVG
                     DEVLDTSIKAKLEQMKAALAA"
     gene            1834..3387
                     /gene="atpA"
                     /locus_tag="VF308_00770"
     CDS             1834..3387
                     /gene="atpA"
                     /locus_tag="VF308_00770"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019657638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEX7435216.1"
                     /translation="MQLNPAEISELIKSRIEGLAVSADIRNQGTVVSVTDGICRVHGL
                     SEAMQGEMLEFPAAPDGSATYGLALNLERDSVGTVILGEYEHISEGDTVKCTGRILEV
                     PIGPELKGRVVNALGAPIDGKGPINAKLSAPIEKIAPGVIARQSVSQPMATGLKSIDS
                     MVPIGRGQRELIIGDRQTGKSAVAIDAIINQKGQNMTCIYVAIGQKASSVKNVVRALE
                     AHGAMEYTIVVAATAAESAAMQYVSAYSGCTMGEYFRDRGEDALIVYDDLSKQAVAYR
                     QVSLLLRRPPGREAYPGDVFYLHSRLLERAARVNAEYVEKFTEGAVKGRTGSLTALPI
                     IETQAGDVSAFVPTNVISITDGQIFLETSLFNAGIRPAINAGISVSRVGGAAQTKVIK
                     GLSGGIRTDLAQYRELAAFAQFASDLDEATRKQLDRGARVTELLKQAQYSPLPISLMA
                     ATLFAVNKGYVDDIDVKKALAFEHGLHTHLKTSHAALLAKIEDTKVLDKDAEAELASA
                     TTAFKKSFA"
     gene            3423..>4112
                     /gene="atpG"
                     /locus_tag="VF308_00775"
     CDS             3423..>4112
                     /gene="atpG"
                     /locus_tag="VF308_00775"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012081464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit gamma"
                     /protein_id="HEX7435217.1"
                     /translation="MAAGKEIRGKIKSVENTKKITKAMEMVAASKMRKAQERMRAARP
                     YSEKIRDLASNLSTATPEYKHPFMLKHEAAKAAGVIVVTTDKGLCGGLNTNVLRAVTV
                     KLKELEGQGIKTEAVAIGNKGLGFLNRIGAKVVSHAVQLGDRPVLDKLIGPVKVLLDA
                     YAAGRLSAVYLCYTRFINTMKQEPVVQQLLPLSADAMRADTAKAGGRYGWDYIYEPDA
                     QAVIDELLVRYV"
BASE COUNT          748 a         1401 c         1315 g          648 t
ORIGIN      
        1 gttcggcacc gtcaaggtca gcgccaatcc gctcagctgg atcggcttcc tgctgctgtc
       61 tatggccaac gtcgcgatgc agctggtcga attcgtctcc aagaccgtct cgcacggcat
      121 gcggctgttc ggcaacatgt acgcgggtga actgatcttc ctgctgatcg cgttgctcgg
      181 cggtgccttc acgctttcgg tgggcggctt cgtgctcgcc cttctgcaca tcgcggccgg
      241 cacggtgtgg gcgatcttcc atatcctgat catcaccctg caggcgttcg tgttcatgat
      301 gctgacgctg gtctacatcg gccaggcgca cgactcgcac tgagccgcgc accagcgtcg
      361 ctttctcttt ccccctttca ctctttcatc actctggagt caacatggaa ctcatcggtc
      421 tcgtcgcgat tgctgccggt ctcatcattg gtctgggagc gctcggcgcc tgcgtcggtg
      481 tcggcatcat gggcagcaag tacctcgaat cggccgcgcg ccagcccgaa ctgatgggcg
      541 tattgcagac gaaggtgttc ctgctcctcg gcctgatcga cgcctcgttc atcatcggga
      601 ccggtatcgc gctgtggttc accaccgcga acccgttcct cgcccagatc gcgaacctgc
      661 cgaagtaatc gttcgttcga gggacgtgcg gcagtcgcct cgcccgggcc tcccgccagc
      721 gccacctttg attgaggcac tcacgtgagc atcaccttca ccttcatcat tcagttgatc
      781 gtcttcctga tcctggcctg gttcacgatg aagttcatct ggccgccgat cacggtcgcg
      841 ctcgacgagc gcgcgaacaa gattcgcgaa ggcctgtcgg ccgccgacac cgcgaaggcc
      901 gagctggcga cggccaacaa gcgggtcgag gagcagctct cggccgcccg caccgatgcc
      961 acgcagcgcc tggccgacgc cgagcgcctg gcgcagtcga tgatcgagga agccaagggg
     1021 cgcgccagcg acgaaggcgc caagatcatc gccgcggcca aggccgaagc gcagcaggag
     1081 tcgctgaagg cgcgcgaggc gctgcgcgag caggtcgccg cgctggcggt caagggcgcg
     1141 gagcagattc tccggcgcga agtcgacgcc ggggtgcacg ccgacctgct cgggcgcctc
     1201 aaggtcgagc tctgagccat ggctgagctg gcaaccatcg cccgcccgta cgccgaggcc
     1261 ctgttcaagg ccgatggcgt ggccgacgca ggcgcgctcg ccgcggaatt gcagggtctc
     1321 gccgatgtgg ccgacgaccc gcagttgcgc cagtacgccg acaacccgaa ggcgagcgcg
     1381 gagcaggtgt tcgacctggt cacgtcggtc gcccagcgcc ccggctcggc cgcgctcagc
     1441 gcccccgcga agaacctctt gcgcatcgtg atcgacaacg gacgcctggc cgcgctgccc
     1501 gacatcgcgg cccagtttca cgccctcgtc aatgcgcgct ccggaacttc cgatgcgctg
     1561 gttcaaagcg catttccgat cgagccccgg caactcgacg acgtcgtcgc cgcgctcgaa
     1621 aggcgcttcg gccgcaagct caacgcgagc gtcgtgatcg atccggaatt gatcggcggc
     1681 atccgcgtcg tcgtcggtga cgaggtgctc gacacctcga tcaaggcgaa gctcgaacag
     1741 atgaaggccg cgctggccgc ctgagcggcg gcgcgtcttc ctgaaacgtc cactcgaaac
     1801 tgccagcctc gtcggcagac cggagaaccc agcatgcaac tcaaccccgc agaaatttcc
     1861 gaactgatca agagccgcat cgaagggctc gcggtctcgg ccgacatccg caaccagggc
     1921 accgtggtct cggtgaccga cggcatctgc cgcgtccacg gcctttcgga ggcgatgcag
     1981 ggcgagatgc tcgaattccc ggccgcgccc gacggctcgg cgacctacgg tctggccctc
     2041 aacctcgagc gcgactcggt cggcacggtc atcctgggcg aatacgagca catctccgaa
     2101 ggcgacacgg tcaagtgcac cgggcgcatc ctcgaagtgc cgatcggccc tgaactgaag
     2161 ggccgcgtcg tcaatgcgct gggggcgccg atcgacggca agggcccgat caacgccaag
     2221 ctgtcggcgc cgatcgagaa gatcgcgccg ggcgtgattg cgcgccagag cgtgagccag
     2281 ccgatggcga ccggcctgaa gtcgatcgac tcgatggtgc cgatcgggcg cggccagcgc
     2341 gagctgatca tcggcgaccg ccagaccggc aagagcgcgg tcgcgatcga cgcgatcatc
     2401 aatcagaagg gtcagaacat gacctgcatc tacgtcgcga tcggccagaa ggcgtcgtcg
     2461 gtcaagaacg tggtgcgcgc gctcgaagcg cacggcgcca tggaatacac catcgtcgtg
     2521 gcggccaccg cagccgaatc ggccgccatg cagtacgtgt cggcctattc cggctgcacc
     2581 atgggcgaat acttccgcga ccgcggcgag gacgcgctga tcgtctacga cgacctgtcc
     2641 aagcaggccg tcgcctatcg ccaggtctcg ctgctgctgc gccgcccgcc gggccgcgaa
     2701 gcctacccgg gcgacgtgtt ctacctgcac tcgcgcctgc tcgagcgcgc cgcgcgcgtc
     2761 aacgccgaat acgtcgagaa gttcaccgag ggcgccgtca agggcaggac cgggtcgctc
     2821 actgcgctgc cgatcatcga gacccaggcc ggcgacgtct cggcgttcgt gccgaccaac
     2881 gtgatctcga tcaccgacgg ccaaatcttt ctcgagacct cgctcttcaa cgccggcatc
     2941 cggcccgcca tcaacgccgg catttcggtc tcgcgcgtcg gcggcgcggc ccagaccaag
     3001 gtcatcaagg gcctgtcggg cggcatccgg accgacctgg cgcagtaccg cgaactcgcc
     3061 gcgttcgcgc agttcgcctc cgacctcgac gaagccaccc gcaagcagct cgaccgcggc
     3121 gcgcgcgtga ccgagctgct gaagcaggcc cagtactccc cattgccgat ttcactgatg
     3181 gcggcgaccc tcttcgcggt caacaagggc tacgtggacg acatcgacgt gaagaaggcg
     3241 ctcgcgttcg aacacgggct gcacacgcat ctcaagacca gtcacgccgc gctgctcgcg
     3301 aagatcgagg acacgaaggt gctcgacaag gacgccgagg ccgagctcgc gagcgccacc
     3361 acggcgttca agaagtcgtt cgcctgagca tctgacccga accggggcac gaggaaaccg
     3421 ccatggcagc aggcaaggaa atacgcggca agatcaagag cgtcgagaac acgaagaaga
     3481 tcaccaaggc gatggaaatg gtcgccgcgt cgaagatgag gaaggcccag gagcgcatgc
     3541 gcgcggcgcg cccgtacagc gagaagatcc gcgacctggc ttcgaacctc tcgaccgcga
     3601 cgcccgaata caagcacccg ttcatgctca agcacgaggc cgcgaaggcg gccggcgtca
     3661 tcgtcgtcac gaccgacaag ggcctgtgcg gcggcctcaa caccaacgtg ctgcgcgccg
     3721 tgacggtgaa gctgaaggag ctcgaaggcc agggcatcaa gaccgaggcg gtggccatcg
     3781 gcaacaaggg tctgggtttc ttgaaccgga tcggcgccaa ggtggtttcg cacgcggtcc
     3841 agctcggcga caggccggtg ctcgacaagc tgatcggccc ggtcaaggtg ctgctcgacg
     3901 cctacgcggc cggccggctc agcgcggtct atctttgcta cacgcgcttc atcaacacga
     3961 tgaagcagga gccggtcgtg cagcagctgc tgccgctctc ggccgatgcg atgcgcgccg
     4021 acaccgccaa ggcgggcggc aggtacggct gggactacat ctacgaaccg gacgcgcagg
     4081 cggtgatcga cgaactgctg gtgcgttacg tc
//
LOCUS       DASVHM010000042         1653 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_941099, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000042 DASVHM010000000
VERSION     DASVHM010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_941099"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..184
                     /locus_tag="VF308_00780"
     CDS             <1..184
                     /locus_tag="VF308_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018441060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cobaltochelatase subunit CobS"
                     /protein_id="HEX7435218.1"
                     /translation="SPRTVITWAENAEIFTDIGFAFRVTFLNKCDELERPLVAEFYQR
                     CFNVELAESSVNVAMS"
     gene            338..>1653
                     /locus_tag="VF308_00785"
     CDS             338..>1653
                     /locus_tag="VF308_00785"
                     /inference="COORDINATES: protein motif:HMM:NF017973.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435219.1"
                     /translation="MTTSNTKFRTGSKEAPTEPFKRAVTACLRAIAKTPELEVTFAAE
                     RPGLAPGKARLPEPARKMTRRDAAIVRGHADSIALKLACHDPKVHRKLMPGNPQARGV
                     FEAVEQARVEALGSRRMAGVAKNLTAMLDDHFHRGKFDEITDRADAPLSDALAMLVRE
                     RLTGLAPPAAARKMVDLWRPLLEDKIGARLDRLDRFAEDQAKFGDAVHDLLSALELGD
                     DRNADADEDENQDENRDGENDQSGAEGSPDSDAAQEMSADQAQASTDEMSESAMESAQ
                     ASTSDTFDDGELGDDETPGEATRPNSRHANEPRGPEYHAFAPKFDEVIAAEDLCDHDE
                     LERLRSYLDKQLAHLQGIVARLANRLQRRLMAQQNRAWEFDLEEGVLDPARLSRVVTD
                     PYHPLSFMSEKEATFRDTVVTLLLDNSGSMRGRPITVAATCADILAR"
BASE COUNT          305 a          526 c          576 g          246 t
ORIGIN      
        1 gagcccgcgc accgtgatca cctgggccga gaatgccgag attttcaccg atatcggctt
       61 tgcgttccgc gtcaccttcc tcaacaagtg cgacgaactg gaacggccgc tggtcgctga
      121 attctatcag cgctgcttca acgtcgagct ggcggagtct tcggtgaacg tggcgatgag
      181 ctagcgtcgt cccggcgaac gccgggaccc atacgccggg aagtttcagt aggatgatgg
      241 tgctggatct cgggagagca atgaccgccg gtggttatgg gtccccgctt tcgcggggac
      301 gacccgaggt gcggggacga cccgcggtga ggccacgatg acgacgtcga acaccaaatt
      361 ccgtaccgga tcgaaggaag cgccgaccga gccgttcaag cgcgcggtga cggcctgtct
      421 gcgcgcgatc gcgaagacgc cggagctcga agtgacgttc gccgccgagc ggccgggtct
      481 ggcgccgggc aaggcgcggc tgccggagcc tgcgcgcaag atgacccggc gcgacgccgc
      541 catcgtccgt ggccatgcag actccatcgc gctaaaactc gcctgccacg atccgaaagt
      601 gcaccgcaag ctgatgccgg gaaatccgca ggcgcgcggg gtgttcgaag cggtggagca
      661 ggcgcgggtc gaggcgctcg gctcgcggcg gatggcgggg gttgcgaaaa acctcaccgc
      721 gatgctcgac gatcacttcc accgcggcaa gttcgacgag atcaccgacc gcgccgacgc
      781 gcctttgtcg gacgcgctgg cgatgctggt gcgtgagcgc ctgaccggcc tggcgccgcc
      841 ggccgccgcc cgcaagatgg tcgacctgtg gcgtccgctg ctcgaagaca agatcggcgc
      901 gcggctcgac cggctcgatc gcttcgccga ggatcaggcg aaattcggcg acgcggtgca
      961 tgatctgttg agcgcgctcg aacttggcga cgaccgcaac gccgatgccg acgaggacga
     1021 gaaccaggac gaaaaccgcg acggcgagaa cgaccagtcc ggcgccgagg gctcgccaga
     1081 ctctgacgcg gcgcaggaaa tgagcgccga tcaggcgcag gcctccaccg acgagatgtc
     1141 ggagagcgcg atggaaagcg cgcaggcctc cacgtcagac acttttgacg acggcgaact
     1201 cggcgacgac gaaaccccgg gcgaggcgac gcggccgaat tcgcgccacg ccaacgagcc
     1261 gcgcgggccg gaatatcacg ctttcgcgcc gaaattcgac gaggtgatcg cggccgagga
     1321 tctttgcgac cacgacgagc tggaacggtt gcgcagctat ctcgacaagc agctcgcgca
     1381 tctgcagggc atcgtggcgc ggctcgccaa ccgcctgcag cgccggctga tggcgcagca
     1441 gaaccgcgcc tgggagttcg atcttgagga gggtgtgctg gatccggcgc ggctgtcgcg
     1501 cgtggtgacc gacccgtatc atcccttgtc gttcatgagc gaaaaggaag cgaccttccg
     1561 cgacaccgtg gtgacgctgc tgttggacaa ttccggctcg atgcgcggcc gacccattac
     1621 ggtggcggcg acctgcgcgg atattctggc gcg
//
LOCUS       DASVHM010000043         4192 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_652319, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000043 DASVHM010000000
VERSION     DASVHM010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4192
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_652319"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..972)
                     /locus_tag="VF308_00790"
     CDS             complement(64..972)
                     /locus_tag="VF308_00790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008903770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEX7435220.1"
                     /translation="MKKSFLSGIAIVAAAFAVAGTAHAEDTLKKIKDSGAITEGVRES
                     SGALAFTLGDGKYTGFHYDVCARIIADIQKQLGLAKLETKYQPVTSQNRIPLVQNGTV
                     DLECGSTTNNATRQKDVAFAPTLYVEEVRIATKKSSGIKNIADLNGKTVATTTGTTSV
                     QLLRKNKRAAGMDFKELNGKDHSDSFLLLESGRADAFVMDGQILAGLISKSKSPNDYA
                     IVGEVLSVEPIAIMYRKDDPAFKKAVDDSVRAMAKSGEAAKLYDKWFMKPIPPSNTIV
                     GLPASDATKAAWANPSDKPLEEYAQP"
     gene            complement(1126..2955)
                     /locus_tag="VF308_00795"
     CDS             complement(1126..2955)
                     /locus_tag="VF308_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HEX7435221.1"
                     /translation="MRHAALSSPPPAAAAAREDRPRSDWRTLAKLVPYVWAWRWRVLV
                     ALACLIAAKLANIGVPLVLKSLVDALALKPGDPRSALVVPVAILLAYGALRVSITLFT
                     EMREFLFYPVAARIARRVSLEAFEHLLALSLRFHLERQTGGVSRDIERGSRSIQSLLN
                     YTIYNILPTLVEITMVIVLLSAKFDGWFAAITFGALVIYIAFTVSVTEWRTAFRRAMN
                     EQDSKANTKALDALLNYETVKYFSNEPFEQARYDENLQRLEKASIKSQTSLSLLNLGQ
                     SLIIATAVTLLVWRATAGVVAGTMTLGDLVLVNALMIQLYIPLNFLGVIYREIKQSMI
                     DMEKMFALLGQNREIADAPDAQPLVARGGAVRFADVRFGYDADREILHGVSFEIPAGK
                     TVAVVGPSGSGKSTLARLMFRFYDVDSGRISIDGQDIRSVTQKSLRESIGIVPQDTVL
                     FNDTVEYNIAYGRTGADRAAVEGAARSAHIHSFIASTPKGYDTIVGERGLKLSGGEKQ
                     RVAIARTLLKNPPIMIFDEATSALDSANERAIQAELQSAARNRTALVIAHRLSTVVDA
                     HQILVMEEGRIVERGTHAELVARGDRYAEMWQLQQSSAEALEA"
     gene            3104..3454
                     /locus_tag="VF308_00800"
     CDS             3104..3454
                     /locus_tag="VF308_00800"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEX7435222.1"
                     /translation="MRTMPMPADANGNGDIFGGWIMAQVDIAGAVLPARIAKGRIATV
                     AVNQFVFKQPVSMGDLLSFYVRVERIGRTSVTVNVEVFAERNPADLHVVKVTEANLTY
                     VAIDMNGRPRPIPK"
     gene            3503..>4192
                     /locus_tag="VF308_00805"
     CDS             3503..>4192
                     /locus_tag="VF308_00805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012760923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEX7435223.1"
                     /translation="MSDARAGADALFILLGAIMVLAMHGGFAFLELGTVRAKNQVNAL
                     VKIMVDFAVSTVAYFFVGYAVAYGTHFFTGADALSAKNGYELVKFFFLLTFAAAIPAI
                     VSGGIAERSRFGPQLVATAVLVGLVYPLFEGVAWNGNFGIQAWIKSVAGAEFHDFAGS
                     VVVHAVGGAHPPSSIPFLALGAWMLTVGWFGFNVMSAQTLDKISGLVAMNSLMAMAGG
                     TIAGLVVGRNDP"
BASE COUNT          627 a         1379 c         1449 g          737 t
ORIGIN      
        1 gcaagcttcg cgccgcgcgg cgctagggct tacctcaggc ggccggcagc cggccgccga
       61 ggttcagggc tgggcgtact cttcgagcgg cttgtcgctc gggttggccc aggccgcctt
      121 ggtggcgtcg ctcgccggca ggccgacgat ggtgttggac ggcgggatcg gcttcatgaa
      181 ccacttgtcg tagagcttgg cggcttcgcc gctcttggcc atcgcccgga cgctgtcgtc
      241 gaccgccttc ttgaacgccg ggtcgtcctt gcggtacatg atcgcgatcg gctcgaccga
      301 cagcacctcg ccgacgatcg cgtagtcgtt cgggctcttc gacttcgaga tcaggccggc
      361 caggatctgg ccgtccatga cgaacgcgtc ggcgcggccc gactcgagca gcagaaagct
      421 gtcggagtgg tccttgccgt tgagctcctt gaagtccatg ccggcggcgc gcttgttctt
      481 gcgcagcagc tgcaccgagg tcgtcccggt cgtcgtcgcg acggtcttgc cgttcaggtc
      541 ggcgatgttc ttgatgcccg agctcttctt ggtggcgatg cgcacttcct cgacgtaaag
      601 cgtcggcgcg aaggcgacgt ccttctggcg cgtcgcgttg ttcgtcgtcg agccgcactc
      661 gaggtcgacg gtgccgttct gcaccagcgg gatgcggttc tgcgaagtga ccggctggta
      721 cttggtctcg agcttggcga ggccgagctg cttctggatg tcggcgatga tgcgggcgca
      781 gacgtcgtag tggaagcccg tgtacttgcc atcgccgagc gtgaacgcga gcgcgcccga
      841 cgactcgcgg acgccttcgg tgatggcgcc gctgtccttg atcttcttca acgtgtcttc
      901 ggcatgcgcg gtgccggcga cggcgaacgc cgccgcgacg atcgcgatgc cgctcagaaa
      961 cgatttcttc atgggtactc ctgatggttg gaagctcgag gctggcctcg ccgactacaa
     1021 cgaaattcta ggcacgaccg ccgaccgctc gcgccgggtt tgcgccggac cgagggtttt
     1081 gccggaggaa gtcgatcgca acctccgtgc caccggggca ccggatcagg cttcgagcgc
     1141 ttcggcgctg ctctgctgca gctgccacat ctcggcgtag cggtcgccgc gcgcgaccag
     1201 ctccgcgtgc gtgccacgct cgacgatccg gccctcctcc atgaccagga tctggtgcgc
     1261 gtcgacgacc gtcgacaggc gatgcgcgat gacgagcgcc gtgcggttcc tcgccgcgct
     1321 ctgcagctcg gcctggatcg cccgctcgtt ggccgagtcg agcgccgagg tcgcctcgtc
     1381 gaagatcatg atcggcgggt tcttgagcag ggtgcgggcg atcgcgacgc gctgcttctc
     1441 gccgcccgag agcttcaggc cgcgctcgcc gacgatcgtg tcgtagccct tcggcgtcga
     1501 ggcgatgaac gaatggatgt gcgccgagcg cgccgccccc tcgacggccg cacggtcggc
     1561 gccggtgcgg ccgtaggcga tgttgtattc gaccgtgtcg ttgaagagca cggtgtcctg
     1621 cgggacgatg ccgatcgatt cgcgcaggct cttctgggtg acgctgcgga tgtcctggcc
     1681 gtcgatcgag atgcggcccg agtcgacgtc gtagaagcgg aacatcaggc gcgccagcgt
     1741 gctcttgccc gagcccgagg gtccgaccac cgcgaccgtc ttgccggccg ggatctcgaa
     1801 gctcacgccg tgcaggatct cgcggtcggc gtcgtagccg aagcggacgt ccgcgaagcg
     1861 caccgcgccg ccgcgcgcga ccagcggctg ggcatccggc gcgtcggcga tctcgcggtt
     1921 ctggccgagc agcgcgaaca tcttctccat gtcgatcatc gactgcttga tctcgcggta
     1981 gatgacgccg aggaagttga gcgggatgta gagctggatc atcagcgcgt tgacgagcac
     2041 caggtcgccg agcgtcatcg tcccggcgac gacaccggcg gtcgcgcgcc agaccagcag
     2101 cgtcaccgcc gtcgcgatga tcaggctctg gccgaggttg agcagcgaca gcgacgtctg
     2161 cgacttgatc gacgccttct cgagccgctg caggttctcg tcgtagcgcg cctgctcgaa
     2221 cggctcgttc gagaagtact tgacggtctc gtagttgagg agcgcgtcga gcgccttggt
     2281 gttggccttc gagtcctgct cgttcatcgc gcggcggaac gcggtgcgcc attcggtgac
     2341 gctgaccgtg aaggcaatgt agatcaccag cgcgccgaac gtgatcgccg cgaaccagcc
     2401 gtcgaacttg gccgagagca ggacgatcac catcgtgatc tcgaccagcg tcggcaggat
     2461 gttgtagatc gtgtagttga ggagcgactg gatcgagcgc gagccgcgct cgatgtcgcg
     2521 cgacacgccg ccggtctggc gctcgaggtg aaagcgcagg ctgagcgcga gcaggtgctc
     2581 gaacgcctcg agcgagactc gccgcgcgat ccgcgccgcg accggataga agaggaactc
     2641 tcgcatctcg gtgaagagcg tgatcgagac gcggagcgcg ccgtaggcga gcaggatcgc
     2701 gaccggcacg acgagcgcgc tgcgcgggtc gccgggcttg agcgcgagcg cgtcgaccag
     2761 gctcttcagg accagcggca cgccgatgtt ggcgagcttg gccgcgatca ggcaggcgag
     2821 cgcgacgagc acgcgccagc gccaggccca gacgtagggg acgagcttgg cgagcgtccg
     2881 ccagtcggac cgaggccgat cctcgcgtgc ggcggccgcg gcgggcggtg gcgaggaaag
     2941 ggcggcgtgt cgcatcggca agcggtcggc ggagtgattg atggaagaat cggccggtcg
     3001 ccgcttcgag tggagcaata tgcccgagtt ttcaggcgag gacgccctcg ccgtcgtgtc
     3061 cggcatcgcg ccgctgcagc tgccgagcga tcgccatctg gcgatgcgga cgatgccgat
     3121 gcccgccgac gcgaacggca acggcgacat cttcggcggc tggatcatgg cccaggtcga
     3181 catcgccggc gccgtccttc cggccaggat cgcgaaaggg cggatcgcca ccgtcgccgt
     3241 caaccagttc gtcttcaagc agccggtctc gatgggcgac ctgctcagct tctacgttcg
     3301 cgtcgagcgg atcggccgga cctcggtgac ggtcaacgtc gaggtcttcg ccgagcgcaa
     3361 tccggccgac ctgcacgtcg tcaaggtgac cgaggccaac ctcacctacg tcgcgatcga
     3421 catgaacggc cggccgcggc cgatcccgaa atgacctgag cgaccgatcc ggacgccaac
     3481 aagaagactc gaggagacga cgatgagcga tgcccgcgcc ggcgccgacg ccctgttcat
     3541 cctgctcggc gcgatcatgg tgctggcgat gcacggcggc ttcgcgttcc tcgagctcgg
     3601 cacggtgcgg gcgaagaacc aggtcaacgc gctggtcaag atcatggtcg acttcgccgt
     3661 ctcgaccgtc gcctatttct tcgtcggcta cgccgtcgcc tacggcaccc acttcttcac
     3721 cggcgccgat gcgctctcgg cgaagaacgg ctacgagctg gtgaagttct tcttcctcct
     3781 caccttcgcg gcggcgatcc cggcgatcgt ctcgggcggc atcgccgagc gctcgcgctt
     3841 cgggccgcag ctggtcgcca cggcggtgct cgtcggcctg gtctacccgc tcttcgaagg
     3901 cgtcgcctgg aacggcaact tcggcatcca ggcctggatc aagtccgtcg ccggcgccga
     3961 gttccacgat ttcgccggca gcgtcgtcgt tcacgcggtc ggcggcgcgc atccgccgtc
     4021 gagcattccc ttcctcgccc tcggcgcctg gatgctcacc gtcggctggt tcggcttcaa
     4081 cgtgatgagc gcgcagaccc tcgacaagat ctcgggcctg gtcgcgatga attcgctcat
     4141 ggcgatggcg ggcggcacga tcgcgggcct cgtcgtcggg cgcaacgacc cg
//
LOCUS       DASVHM010000044         7182 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_941361, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000044 DASVHM010000000
VERSION     DASVHM010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7182
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_941361"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..204)
                     /locus_tag="VF308_00810"
     CDS             complement(<1..204)
                     /locus_tag="VF308_00810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX7435224.1"
                     /translation="MTNPVPADFYSADGYCANDSVGYLMRRVLLALTQDTDKRLDPHG
                     LTHAQWGPLFLIRKSGSSTVAELA"
     gene            320..2125
                     /locus_tag="VF308_00815"
     CDS             320..2125
                     /locus_tag="VF308_00815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEX7435225.1"
                     /translation="MPTAPSPQIRAAAPPGAPRDVRSLSGLVPFLRPYRTRIALAGLF
                     LVLAALSTLVFPVALKSLIDQGFVATDPGARVMALREHFFALFGVGVALGVFSALRFY
                     MVSWLGERVTADIRNAVYAHVVRQSPEFFETTQTGEVLSRLTTDTTLVQTVVGSSLSM
                     GLRNTVMGIGAMAMLIITNPYVMTQVLGILVIVVLPSLYFGRRVRKLSRASQDRVADS
                     SAIAAEVLNAIPVVQSYTQERRESDRFARSTENAFGTAIRRTRMRSMLVAFIISATFG
                     ALLWGLYQGTQAVVHGDITAGHLGQTVVYVIILVSSVAVLSEVYGDLLRAAGATERLM
                     ELLEMRSPIASPARPVALAPALGGSAVSLRDVTFRYPSRPQHPTLAHFSLEVRPGETV
                     ALVGPSGAGKSTVFQLLLRFYDVAAGAVLIDGVSVAALALDELRGRVGIVPQDSVIFS
                     ADAMENIRYGRPAASDAEVEAAARAAFAHDFITALPDGYKTFLGERGVRLSGGQRQRI
                     SIARAMLKNPPLLLLDEATSALDAESERMVQAALESAMKDRTTLVIAHRLATVQRADR
                     IVVMEAGQIVETGTHLELTASGGLYARLAALQFDQ"
     gene            2202..3041
                     /locus_tag="VF308_00820"
     CDS             2202..3041
                     /locus_tag="VF308_00820"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEX7435226.1"
                     /translation="MTDTARPIRSQYEDFMRHVAAHGVRKADRTGTGTKSIFGHQMRF
                     DLAEGFPLVTTKKVHLKSIILELLWFLRGESNARWLQERGVTIWNEWAGPDGELGPVY
                     GVQWRSWPTPDGGHIDQIAEVIKQLRNNPDSRRIIVSAWNVAALPKMALMPCHALFQF
                     YVAPPQGPGARGKLSCQLYQRSADIFLGVPFNIASYALLTHMLAQQCDLDVGDFIWTG
                     GDCHLYNNHMEQVAEQLSRLPYPYPTLTIRRRPASIFDYAYEDFEVVDYAHHAPIKAP
                     VAV"
     gene            3064..4341
                     /gene="otnK"
                     /locus_tag="VF308_00825"
     CDS             3064..4341
                     /gene="otnK"
                     /locus_tag="VF308_00825"
                     /EC_number="2.7.1.217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013903145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxo-tetronate kinase"
                     /protein_id="HEX7435227.1"
                     /translation="MSGAPALGCIADDFTGATDLANNLVRAGMRVVQTIGTPEGPLDA
                     EADAVVVALKSRTIPAVDAVAQSLVALEWLRRQGARQIYFKICSTFDSTPAGNIGPVT
                     EALMDALGCDFTIVTPAFPDTGRTVFKGHLFVGDVLLSDSGMRHHPLTPMTDPNLVRV
                     LAAQSRRPVGLIEHRVVAQGEQAVRDRMEELRRQGVGLAIVDVVDNDDLMLLGRAFKS
                     LAVLTAGSGLAIGLPQNGGFAPGLAAAAAMPPKSGSRAVISGSCSQATAAQVEAFVDA
                     GLPAFSVDPARLAHGENVVAETIAWAAPLLPHGPVLVYSTASPGDVLAAQEAFGVART
                     GALVEQALAAIACALVEAGVRQLVVAGGETSGACVQALRVRQLRIGSQIDPGVPWCHA
                     RSPLAPEAGLHLTLKSGNFGGPDFFTRAFAVLP"
     gene            4338..5000
                     /locus_tag="VF308_00830"
     CDS             4338..5000
                     /locus_tag="VF308_00830"
                     /EC_number="4.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007829142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HEX7435228.1"
                     /translation="MNEHPLREEICRVGRSLHDRGYVHGTAGNISVRLEAGAGFLVTP
                     SEACLGRLDPAELAHVLPSGEQVGGLRASKSQLLHRAIYAADPEAGCVIHTHSTHLVA
                     LTLADGCPADDILPPITPYFVMKVGHVPLIAYHRPGDPAVAELVVTRILAGQARGTPI
                     RAVMLERLGPNVWHRTPAEASAVLEELEETARLWLLCSPRPQALGAEQIAELRRTFGA
                     RW"
     gene            complement(5039..5398)
                     /locus_tag="VF308_00835"
     CDS             complement(5039..5398)
                     /locus_tag="VF308_00835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435229.1"
                     /translation="MNAAVLGGQFQAGDGQPHSFGHPQRGAGVGCSLALYRPVTRVAR
                     ISAPLLVCACDNDVVTPPRPAALAAERAQPGVLKRYPVGHYDNIYSGVWFERAVADQI
                     AFLTEALRLGPRPAVST"
     gene            5345..5527
                     /locus_tag="VF308_00840"
     CDS             5345..5527
                     /locus_tag="VF308_00840"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF013180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEX7435230.1"
                     /translation="MRLAVASLELAAEDGRVHLSCSIGVATLSPSSRSSWMVLLGQAD
                     AAAYLAKQQGRNRVVA"
     gene            complement(5619..6980)
                     /locus_tag="VF308_00845"
     CDS             complement(5619..6980)
                     /locus_tag="VF308_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011902473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HEX7435231.1"
                     /translation="MSMLWLGLLFGAATLLLMFSGTPIAFALGSVAILFMVAFMPASA
                     LDTVTQNVYEEMASITLLSIPLFILNGAAIGKSRAGQDLYAALHVWMNKVPGGLGIAN
                     VFACALFAAMAGSSPATCSAIGSAGIPEMRKRGYSPGFAAGIIAAGGTLGILLPPSIT
                     MILYAVAAEQSLARLFLAGIGPGVLLVALFAVYAVFNYKREFERAKKAHAFDGAHSAL
                     LDREHFSLRQKIEMLPRVVPFVVLLIGVMVALYGGFATPSETAGLGALLALVLIAVVY
                     GVWRPKDVRPILSATLQESTMLMFIIGMSLLFSYVMSYLHISQETAQWIVGLNLSKWL
                     LLATLLVLVIVLGFFLPPVSIILMMAPIILPPLKAAGFDLVWFGVLMTIVMETGLIHP
                     PVGLNIFVIKNIAPDIPLPDIIWGVMPFVGLMLFSVVLICVFPAIATQLPDLVMGPVG
                     IGK"
     gene            complement(6980..>7182)
                     /locus_tag="VF308_00850"
     CDS             complement(6980..>7182)
                     /locus_tag="VF308_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014005692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TRAP transporter small permease subunit"
                     /protein_id="HEX7435232.1"
                     /translation="CVFFAWKSWTLLREAVVDGQTTSSSWAPPLWIPYGLMALGMSLL
                     SLQLLVQCVAGFNRLLEAARAR"
BASE COUNT         1180 a         2511 c         2389 g         1102 t
ORIGIN      
        1 agcaagttcg gcgaccgttg acgagccgct ctttctgatc aggaagagcg gcccccattg
       61 cgcgtgcgtc aggccatgcg gatcgaggcg cttgtcggtg tcctgcgtca gcgcgagcaa
      121 cacccggcgc atcaaatagc cgacgctgtc gttggcgcaa tagccatcgg cgctgtagaa
      181 gtcggcgggg accgggttgg tcatggcagg tggacagggc aatcgaaata tcgaaatcga
      241 actgtacatg cctaggcaaa gattgtcaag gctgtttttg acccggcttc cacctgccgg
      301 gctcgcctaa actcgccgga tgccgaccgc tcccagcccg cagatccgcg ccgcagcgcc
      361 ccccggcgcc ccacgcgatg tgcgatcgct gagcggcctc gtgcctttcc tgcgcccgta
      421 ccgcacgcgg atcgccctgg cggggctgtt tctcgtgctc gccgccctca gcaccctggt
      481 cttcccggtc gcgctcaagt cgctgatcga ccagggcttc gtcgccaccg atccgggcgc
      541 acgcgtgatg gcgctgcgcg agcacttctt cgcgctcttc ggcgtcggcg tggcgctcgg
      601 cgtgttctcg gcgctgcgct tctacatggt gagctggctc ggcgagcgcg tgacggcgga
      661 catccgcaac gcggtctatg cgcacgtcgt caggcagagc cccgagttct tcgagacgac
      721 gcagaccggc gaagtgctgt cgcgcctgac gaccgacacc acgctggtcc agaccgtggt
      781 cggatcgagc ctgtcgatgg gcctgcgcaa cacggtgatg ggcatcggcg cgatggcgat
      841 gctcatcatc accaacccgt acgtgatgac gcaggtcctc ggcatcctcg tcatcgtcgt
      901 gctgccgtcg ctctatttcg gccgccgcgt gcgcaagctc tcgcgcgcga gccaggaccg
      961 ggtcgccgat tcgagcgcca tcgcggccga ggtgctcaac gcaatcccgg tggtgcagag
     1021 ctacacccag gaacggcgcg agtcggaccg tttcgcgcgc tcgaccgaga acgccttcgg
     1081 caccgcgatc cggcgcaccc gcatgcgctc gatgctcgtc gccttcatca tcagcgcgac
     1141 cttcggcgcc ttgctgtggg gcctgtacca gggcacgcag gcggtggtcc acggcgacat
     1201 cacggccggc cacctcggcc agaccgtcgt ctacgtgatc atcctcgtca gcagcgtcgc
     1261 cgtgctgtcg gaggtgtacg gcgacctgct gcgcgccgcg ggcgccaccg aacggctgat
     1321 ggagctcctc gagatgcgct cgccgatcgc ctcgcctgca cggccggtcg cgctcgcccc
     1381 cgccctcggc ggctcggcgg tgagcctgcg cgacgtgacc tttcgctacc cctcgcggcc
     1441 gcagcacccg acgctcgccc acttcagcct cgaggtgcgc cccggcgaga ccgttgccct
     1501 ggtcggcccg agcggagccg gcaagagcac cgtgttccag ctgctgctgc gcttctacga
     1561 tgtcgccgcc ggcgcggtac tgatcgacgg cgtctcggtc gccgccctcg cgctcgacga
     1621 actgcgcggg cgcgtcggca tcgtgccgca ggacagcgtg atcttctcgg ccgacgcgat
     1681 ggagaacatc cgctacggcc ggcccgcggc gagcgacgcc gaggtcgaag ccgccgcgag
     1741 ggccgccttc gcgcacgact tcatcacggc gctcccggac ggctacaaga cctttctggg
     1801 cgagcgcggt gtgcgcctct ctggcgggca gcgccagcgc atcagcatcg cgcgcgcgat
     1861 gctgaagaac ccgccgctgc tcctgctcga cgaagccacg agcgcgctcg acgcggagag
     1921 cgaacgcatg gtccaggccg cgctcgaatc ggcgatgaaa gaccgcacca ccctcgtcat
     1981 cgcgcaccgg ctcgcgacgg tgcagcgcgc cgaccgcatc gtcgtgatgg aagcggggca
     2041 gatcgtcgag accggcacgc acctcgagct caccgcgtcg gggggtcttt atgcgcgact
     2101 ggcggcgctc cagttcgacc agtgacgggc ccgggcggcg cccggaccgc gaacgcggca
     2161 cgtggcggcg cggataatcg gcacgaaacg caaggtgccg catgaccgat accgcccgcc
     2221 cgatccgctc gcaatacgag gatttcatgc gccacgtcgc ggcgcacggc gtgcgcaagg
     2281 cggaccgcac cgggaccggc acgaagagca tcttcggcca tcagatgcgc ttcgacctcg
     2341 ccgaaggctt cccgctggtg acgaccaaga aggtccacct gaaatccatc atcctcgagc
     2401 tgctctggtt cctgcgcggc gagagcaatg cgcgctggct gcaggaacgc ggcgtgacga
     2461 tctggaacga atgggcgggc cccgatggcg agctcgggcc ggtctacggc gtgcagtggc
     2521 gttcctggcc gacccccgac ggcgggcaca tcgaccagat cgccgaggtc atcaagcaac
     2581 tgcgcaacaa ccccgattcg cgccgcatca tcgtgagcgc ctggaacgtc gccgcgctgc
     2641 cgaagatggc gttgatgcca tgccatgcgt tgttccagtt ctacgtcgca ccgccgcagg
     2701 gcccgggcgc acggggcaag ctgagctgcc agctctacca gcgcagcgcc gacatctttc
     2761 tcggcgtgcc cttcaacatc gcgagctatg cactgctgac ccacatgctc gcgcagcagt
     2821 gcgatctcga cgtcggcgat ttcatctgga ccggcggcga ttgccacctc tacaacaacc
     2881 acatggaaca ggtcgccgag cagctgtcgc gcttgcccta cccctatccg acgctcacga
     2941 tccggcgccg ccccgcctcg atcttcgact acgcctacga agacttcgag gtcgtcgact
     3001 acgcccatca cgcgcccatc aaggctccgg tcgcggtgtg aggcggcccc gacggacgcg
     3061 agcatgagcg gagcgcctgc cctcggttgc atcgccgacg atttcaccgg cgccacggac
     3121 ctcgccaaca acctcgtgcg cgccggcatg cgcgtggtcc agacgatcgg cacacccgag
     3181 ggtccgctcg acgccgaggc cgacgccgtc gtggtggcgc tgaaatcgcg aacgatcccg
     3241 gccgtcgacg ccgtcgccca atcgctcgtc gcgctcgagt ggctgcgccg gcagggcgca
     3301 cggcagatct acttcaagat ctgctcgacc ttcgattcga cgccggccgg caacatcggc
     3361 cccgtgaccg aagcgctgat ggacgccctc ggctgcgatt tcacgatcgt cacaccggcg
     3421 ttccccgata ccggacgcac cgttttcaag ggtcacttgt tcgtcggcga cgtgctgctg
     3481 tcggacagtg gcatgcgcca ccatccgttg acgccgatga ccgatccgaa cctcgtgcgg
     3541 gtcctggccg cgcaatcgcg gcgcccggtc ggcctgatcg agcaccgcgt ggtcgcacag
     3601 ggggaacagg ccgtgcgcga ccgaatggag gaactgcgcc ggcagggtgt cgggctggcc
     3661 atcgtggatg tcgtcgacaa cgacgatctc atgctgctgg gccgcgcatt caagagcttg
     3721 gcggtgctga ccgcgggctc gggcctcgcc atcggactgc cgcagaacgg gggcttcgcg
     3781 cccggcctcg cggctgctgc cgcgatgccg cccaagtccg gctcgcgggc ggtaatctcg
     3841 gggagctgct cgcaggcgac cgccgcacag gtcgaggctt tcgtcgatgc ggggctgccc
     3901 gccttcagcg tcgacccggc acgactcgcg catggcgaga acgtggtcgc ggaaaccatc
     3961 gcgtgggccg cgcccttgct gccgcacgga ccggtgctcg tgtactcgac ggcgtcgccg
     4021 ggcgacgtgc tggccgcgca ggaagcgttc ggggtcgcac gcaccggcgc gctcgtcgag
     4081 caggcgctgg cggccatcgc ctgcgcgctc gtcgaggcag gcgtgcgtca actggtcgtc
     4141 gccggcggtg agacttcggg cgcctgcgtc caggccctgc gggtccgcca actgcggatc
     4201 ggatcgcaga tcgatccggg cgtgccctgg tgccatgcgc gctcgcccct cgcgcccgag
     4261 gccggcttgc acctgacgtt gaagtccggc aacttcggcg gccccgattt cttcacccga
     4321 gcattcgccg tgctgccatg aacgagcacc cgctgcgcga agagatctgc cgggtcggcc
     4381 ggtcgctgca tgaccgcggc tatgtgcatg gcactgccgg caacatcagc gttcgcctcg
     4441 aagccggcgc cggctttctc gtcacgccgt ccgaggcctg cctcggacgg ctcgatccgg
     4501 ccgagcttgc gcacgtgctg ccgtcgggcg agcaagtcgg cggcttgcgt gccagcaagt
     4561 cccagctgct tcatcgcgcc atctatgcgg ccgatccgga ggccggttgc gtcattcaca
     4621 cccacagcac gcatctcgtc gcgctcacct tggccgacgg ttgcccggcc gacgacatcc
     4681 tgccgcccat cacgccgtac ttcgtgatga aggtcggcca tgtgccactc atcgcctatc
     4741 accggcccgg cgacccggca gtcgctgagc tcgtcgtcac caggattctt gccggccagg
     4801 cccgcggcac gccgattcgc gcggtcatgc tcgagcgcct cggtccgaac gtgtggcacc
     4861 gcacgcccgc ggaggcgagc gccgtcctcg aggaactgga agagacggcg cgtctctggc
     4921 tcttgtgctc gccgcgcccg caagcgctgg gtgccgagca gatcgcggaa ttgaggcgga
     4981 ccttcggcgc gcgctggtag cgtgcagtcg cagccgctcc gcgcgaagtc cagtcccgtc
     5041 aggtgctcac cgccggccgc gggccgagcc gaagggcttc ggtcaggaac gcgatctgat
     5101 ccgcgaccgc acgctcgaac cagactccgg agtagatgtt gtcgtagtgc ccgaccgggt
     5161 accgcttcag cacgccgggt tgcgcgcgct cggcggccag ggcggcaggc cgcggcggcg
     5221 tgaccacgtc gttgtcgcag gcgcagacga gcagaggcgc cgaaatcctg gccacccgcg
     5281 tcacgggccg gtagagcgcg aggctgcaac cgacgccagc gccgcgctga ggatggccga
     5341 aagaatgcgg ctggccgtcg ccagcttgga actggccgcc gaggacggcc gcgttcatct
     5401 gtcgtgcagc atcggcgtgg cgacgttgtc gccctcctcc cgatcgagct ggatggtgct
     5461 gctcggccag gccgatgccg cggcatacct cgccaagcaa caggggcgca accgggtggt
     5521 ggcgtaaggc gcgacggacg aggctgctgg tgcggccgtt agggtcggcg gcatgttggg
     5581 ttgaccgcaa gatggcccgg tctgcgcacc tcccgccctc actttccaat tccgaccggc
     5641 cccatcacca ggtccggcaa ctgcgtcgcg atcgccggga acacacagat cagcaccacc
     5701 gaaaaaagca tcaggccgac gaagggcatg acgccccaga tgatgtcggg gagcgggatg
     5761 tcgggcgcga tgttcttgat cacgaagatg ttcagaccca ccggcgggtg gatgaggccg
     5821 gtctccatca cgatcgtcat cagcacgccg aaccagacga gatcgaagcc ggccgccttc
     5881 agcggcggca ggatgatcgg cgccatcatc aggatgatgc tgaccggcgg caggaagaaa
     5941 ccgagcacga tcaccagcac gagcaaggtc gcgagcagca gccacttcga cagattcagg
     6001 ccgacgatcc actgcgccgt ctcctggctg atgtgcaggt agctcatcac gtacgagaac
     6061 agcagcgaca tgccgatgat gaacatcaac atcgtcgatt cctgcagcgt ggcgctcagg
     6121 atcggcctga cgtccttcgg gcgccagacg ccgtagacca cggcgatcag cacgagcgcg
     6181 agcagggcgc cgaggccggc cgtttcggat ggcgtcgcga agcccccgta cagggcgacc
     6241 atcacgccga tcagcaacac gacgaagggg acgacccgcg gcagcatctc gatcttttgg
     6301 cgcaggctga agtgctcgcg gtcgagcagc gccgagtgcg ctccatcgaa cgcgtgggcc
     6361 ttcttcgcgc gttcgaactc gcgcttgtag ttgaataccg cgtacacggc gaacagcgcg
     6421 accagcaaca cgccggggcc gatgccggcg aggaacaacc gggcgagcga ctgctccgcc
     6481 gccacggcgt agaggatcat cgtgatcgag ggcggcagca ggatgcccag cgtgccgccg
     6541 gcggcgatga tgccggccgc gaagcccggc gaatagccgc gcttgcgcat ttccggaatg
     6601 cccgccgagc cgatcgccga gcacgtcgcc ggactggaac cggccatcgc ggcgaagagt
     6661 gcgcaggcga agacgttggc gatgcccagt ccgcccggga ccttgttcat ccacacatgc
     6721 agcgccgcat acaggtcctg accggcgcgc gacttgccga tcgccgcgcc attcaggatg
     6781 aacagcggaa tcgagagcag cgtgatgctg gccatttcct cgtagacatt ctgggtcacg
     6841 gtgtcgagcg ccgaagccgg catgaacgcc accatgaaca gtatcgccac gctgccgagc
     6901 gcaaacgcga tcggggtgcc ggagaacatc aacagaaggg tggcggcccc gaagagcagg
     6961 ccgagccaga gcatcgacat cagcgggctc gggcggcctc gagaaggcgg ttgaagccgg
     7021 caacgcactg caccagcagc tgcaggctga gcaggctcat gccgagcgcc atcagcccgt
     7081 acggaatcca cagcggtggc gcccacgacg acgaggtggt ctggccgtcg accacggcct
     7141 cgcggagcag cgtccacgat ttccacgcga agaacacgca ga
//
LOCUS       DASVHM010000045         3199 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1085046, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000045 DASVHM010000000
VERSION     DASVHM010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3199
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1085046"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..1493
                     /locus_tag="VF308_00855"
     CDS             99..1493
                     /locus_tag="VF308_00855"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007855874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX7435233.1"
                     /translation="MSELHALSAAELLDLYRRKAASPVEVVRAVLRHIQAWEPHLHAT
                     YALDADAALTQAEASQARWAKGAPIGALDGVPAMIKENIATKGVPVPLGTAATDLVPA
                     ERDAPPAARLREAGAVILGKTTMPDYGMLSSGLSSFHALTRNPWDLSRGPGGSSSGAG
                     AGAAAGYGPLHVGTDIGGSVRLPAGWCGIFTLKPSLGRIPIYPPYAGRAAGPMTRTVE
                     DSALMMAVLSQPDERDSMSLPAQTLAWNDLDRDMRGLKIGLLMDAGWGAPVEPEVAAA
                     VTAAARALEAAGAIIEPLKPFMTRAMADGMDDFWRTRSWIDISALSEAKRAKVLPFIV
                     EWARGGAGLSGERVFAGYSQMGAMREAAVAACRPFDVVLSPTSPMPAFSAELPCPTND
                     PKRPFEHIAFTLPYNMSEQPAASINCGYTSSGLPIGLQIAGHRHDDLTVMQVARAWER
                     MRPAQRPWPKPPGR"
     gene            1561..2901
                     /locus_tag="VF308_00860"
     CDS             1561..2901
                     /locus_tag="VF308_00860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7435234.1"
                     /translation="MEDRRGNPVSTTSGAALDLAEHALWRLMTFYGTPLDDLDAAIAA
                     APAWLLPHLMKAGFLLGLSEAGFARDGAAVLDQAEPLLAAANERERAHHHALRTLQSG
                     DWHGACRAWEALLLAHPRDALALQWAHLFDFYRGDATNLRQRVARVLPEWDEADPLHP
                     HVLGLHAFGLEESNLYAQAEETGRRALAADPKAPWAVHAVAHVMEMQGRHDEGTQWLL
                     RWRPEWSAGNGFSVHLGWHQALFALERLDTKAALALLDEHMAAAKTQVTLERLDTASL
                     LWRLRLLGVDVGPRWRELVAVWNPEPASAGHYAFNDLHALLALIGAEDYTRAGEWVRA
                     VSARAEGAEGTNREMARNVGLPLIGGMLAFAEGRHGEAVGLMYPVRALAHRFGGSHAQ
                     RDLIDQTLLAASALGGDKRVGRALLNERVLMKASTPLTAQWAERLGLAGRTPPS"
BASE COUNT          463 a         1126 c         1161 g          449 t
ORIGIN      
        1 agaagctgaa gggcctgtgg agcagttccc cgatcttcgc gaacgatctc ggcgcggtga
       61 actggcagtg acgccggcgc gctgacccgc acttcgggat gtccgaactc cacgcgcttt
      121 ctgccgccga gctgctcgac ctgtaccggc gcaaggccgc gtcgcccgtc gaggtcgtgc
      181 gcgcggtgct gcgccacatc caagcgtggg agccgcatct gcatgcgacc tatgcgctcg
      241 acgccgacgc tgcgctgacg caggccgagg cgtcgcaggc gcgctgggcc aagggcgcgc
      301 cgatcggcgc gctcgacggc gtgccggcga tgatcaagga gaacatcgcg accaagggcg
      361 tgccggtgcc gctcggcacc gccgcgaccg acctcgttcc cgccgagcgc gacgcaccgc
      421 cggccgcgcg cctgcgggaa gccggtgcgg tgatcctcgg caagacgacg atgcccgact
      481 acgggatgct ctcgtcgggc ctctcgagct ttcatgcgct gacgcgcaac ccgtgggacc
      541 tgagccgcgg ccccggcggc agcagctcgg gcgcgggcgc cggcgccgcg gccggctacg
      601 gcccgctgca cgtgggcacc gacatcggag gatcggtgcg cctgccggcg ggctggtgcg
      661 gcatcttcac gctgaagccc agcctcggcc ggatcccgat ctacccgccg tacgccggcc
      721 gcgcggccgg gccgatgacg cgcacggtcg aagactctgc gctgatgatg gcggtgctga
      781 gccagcccga cgagcgcgac tcgatgagcc tgccggcgca aacgctcgcg tggaacgacc
      841 tcgaccgcga catgcgcggc ttgaagatcg ggctgctgat ggatgccggc tggggcgcac
      901 cggtcgagcc cgaggtggcc gcggccgtca cggcggcggc gcgtgcgctc gaagcggccg
      961 gcgcgatcat cgagccgctc aagccgttca tgacccgcgc gatggccgac ggcatggacg
     1021 acttctggcg cacgcgctcg tggatcgaca tctcggcgct gagcgaagcg aagcgcgcga
     1081 aggtgctgcc gttcatcgtc gaatgggcgc gcggcggcgc cgggctttcg ggcgagcgcg
     1141 tgttcgccgg ctacagtcag atgggcgcga tgcgcgaggc cgccgtcgcg gcctgccggc
     1201 cgttcgacgt cgtgctctcg ccgacctcgc cgatgccggc cttctcggcc gagctgccgt
     1261 gccccaccaa cgacccgaag cggcccttcg agcacattgc cttcacgctg ccgtacaaca
     1321 tgagcgagca gccggccgcg agcatcaact gcggctacac gtcgtcgggc ctgccgatcg
     1381 ggctgcagat cgcgggccac cggcacgacg acctgacggt gatgcaggtc gcgcgcgcgt
     1441 gggagcggat gcggccggcg cagcggccct ggccgaagcc gccgggccgc tgaagacacc
     1501 gcagccgaga cggatcgagc gcccgcgcga cggatagccc gcactgcacc gatacctctg
     1561 atggaagacc gccgcggcaa cccggtgagc acgacctccg gggctgcgct cgatctcgcc
     1621 gagcacgcgc tctggcgcct gatgacgttc tacggcacgc cgctcgacga cctcgatgcc
     1681 gcgatcgccg ccgccccggc gtggctgctc ccgcatctga tgaaggccgg cttcctgctc
     1741 ggcctgagcg aagccggctt cgcacgcgac ggcgcggccg tgctcgacca ggccgagccg
     1801 ctgctcgccg ccgcgaacga gcgcgagcgc gcgcaccatc acgcgctgcg cacattgcag
     1861 tccggcgact ggcacggcgc ctgccgcgcc tgggaagcgc tgctgctcgc gcacccgcgc
     1921 gacgcgctgg cgctgcagtg ggcgcacctg ttcgacttct accgcggcga cgcgaccaat
     1981 ctgcgccagc gcgtcgcgcg tgtgctgccc gaatgggacg aggccgatcc actgcacccg
     2041 cacgtgctcg ggctgcatgc cttcggcctc gaggaatcga acctctacgc acaggccgag
     2101 gagaccggcc gccgcgcgct cgccgccgac ccgaaagcgc cgtgggccgt gcacgcggtc
     2161 gcgcacgtga tggagatgca gggccgccac gacgagggca cgcagtggct gctgcgctgg
     2221 cggcccgagt ggtcggccgg caacggcttc tcggtgcacc tgggctggca ccaggcgctg
     2281 ttcgcgctcg aacggctcga cacgaaggcg gcgctggcgc tgctcgacga gcacatggcc
     2341 gcggcgaaga cgcaggtgac gctcgaacgc ctggacaccg cgtctctgct gtggcgcttg
     2401 cgcctgctcg gcgttgatgt cgggccgcgc tggcgcgagc tggtcgcggt gtggaatccg
     2461 gagccagcgt cggcgggcca ctacgcgttc aacgacctgc acgcgctgct ggcgttgatc
     2521 ggggccgaag actacacgcg agccggcgag tgggtgcgcg cagtgagcgc gcgcgcggaa
     2581 ggggccgagg gcacgaaccg cgagatggcg cgcaacgtcg gcctgccgtt gataggcggg
     2641 atgttggcgt tcgcggaggg gcgtcacggc gaagcggtcg ggctgatgta tccggtgcgc
     2701 gcgctcgcgc atcggttcgg cggcagccac gcgcagcgcg atctgatcga ccagacgcta
     2761 ctcgcggcat cggcgctcgg cggcgacaag cgcgtcggac gggcactgct gaacgagcgc
     2821 gtgttgatga aggcgagcac gccgctgacc gcacaatggg cggagcggct cggactcgcc
     2881 ggccgtacgc cgccaagcta gtcgcgactc tcgcgcggac tacccgccgt ccgaggtggg
     2941 tcacgcgttt gcacgggttt ggtcgtctta ccccaagcct agaaaaccgc cattcgtgtc
     3001 cgactcgatg gcagcagctt tgcactgggc gcccctcgca cagatcccag cgtgcgcgat
     3061 ctacgcactg ggctccgacc tcgggtattt gacggcggac agccggtccg gccacggatg
     3121 aaggattcgg gttggtggca gccccggatt cagtcttttg ctgacgttga actcgggagc
     3181 cttgaccggc agcttctgg
//
LOCUS       DASVHM010000046         3488 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1013458, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000046 DASVHM010000000
VERSION     DASVHM010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3488
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1013458"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..433
                     /locus_tag="VF308_00865"
     CDS             <1..433
                     /locus_tag="VF308_00865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SAF domain-containing protein"
                     /protein_id="HEX7435235.1"
                     /translation="CFEEYNAHTDPSGRYFTLYKRWHLIGLEVGVSVASVALRGEATG
                     VAQCWNADVVATAKRDLKPGDLLDGEGGYTVWGKLLPAETSLRTGGLPLGLAHEVKIT
                     RPVKKGESLGWADVAVDTSTDAYKLRREMERLFAVPMLKSA"
     gene            complement(443..1861)
                     /locus_tag="VF308_00870"
     CDS             complement(443..1861)
                     /locus_tag="VF308_00870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HEX7435236.1"
                     /translation="MWLRLLERNWLTLHGLVVAIGLIVYVLASRALYQRRHPSAAIAW
                     VVMLALLPYVALPLYFMFGSRKVSGQQVPALAESTVVRSSGRDDLAAWSRRLAGAMGL
                     DNGSGYDDLRIHQDGTEALAALRELIQGARRSIDLCTFLLARDALGREIAERLMERAR
                     AGVRVRVLLDGFGVWLGGHIDLKALRAAGVEVVKFVPALRSAVRGLNLRNHRKMLLVD
                     GARFWTGGRNLAAEYFVGEAGNPRAPWHDLSFDLSGPLGRRAQQRFDMDWNYAAHLPP
                     PSRQVAPAVANEGDDADDAPLAQLIPSGPDQIDDTVQALLVSSAFMARERILAVTPYF
                     VPDATLLMALSLAARRGVAVDLVLPARSNHRLADVARNRPLRDLARAGGRVWQTAHMV
                     HAKAVVVDDALALVGSANLDARSLFLNYELMVAFYRPSDVRRFAAWIDAEKRSATPYR
                     AKPPGFVRDLAEGLVLWLAFQL"
     gene            complement(1925..2341)
                     /locus_tag="VF308_00875"
     CDS             complement(1925..2341)
                     /locus_tag="VF308_00875"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEX7435237.1"
                     /translation="MATLQVDVVSAEGSIFSGQAQFVALPGESGELGILPRHTPLITR
                     IKPGAVRIKRADNGEEEFVFVAGGILEVQPGSVTVLADTAIRGKDLDEAKATEAKRLA
                     EEAMKNAKSDIDFAKAQGEFATMAAQIAALRKFRKK"
     gene            complement(2384..>3488)
                     /gene="atpD"
                     /locus_tag="VF308_00880"
     CDS             complement(2384..>3488)
                     /gene="atpD"
                     /locus_tag="VF308_00880"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011462440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEX7435238.1"
                     /translation="IGAEKVASIHRMAPKYDELSPSQELLETGIKVIDLVCPFAKGGK
                     VGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGERTREGNDFYHEMMDSGVVNSE
                     NLGESKVAMVYGQMNEPPGNRLRVGLTGLTIAESFRDEGKDVLFFVDNIYRYTLAGTE
                     VSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITSIQAVYVPADDLTDPSPATT
                     FAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPNVVGQDHYDTARAVQGILQRYKE
                     LRDIIAILGMDELAPEDKLAVARARKIQRFLSQPFFVAQVFTGSEGKYVTLKETIRGF
                     KMIANGECDSLPEQAFYMVGTIDEAIEKAKKVQ"
BASE COUNT          556 a         1160 c         1214 g          558 t
ORIGIN      
        1 ctgcttcgag gaatacaacg cccacaccga cccgagcggc cgctacttca cgctctataa
       61 gcgctggcac ctgatcggcc tggaggtcgg cgtgtcggtg gccagcgtcg cgctgcgcgg
      121 cgaagcgacc ggcgtggcgc agtgctggaa cgccgacgtc gtggccacgg cgaagcgcga
      181 tctgaagccg ggcgacctgc tcgacggcga aggcggatac accgtctggg gcaagctgct
      241 gccggccgag acatccctgc gcaccggcgg gctgccgctg ggcctcgccc acgaggtgaa
      301 gatcacgcgg ccggtgaaga aaggcgagag cctcggctgg gccgacgtgg cggtcgacac
      361 ctcgaccgac gcctacaagc tgcgccgaga gatggagcgg ctcttcgcgg tcccgatgct
      421 gaaatcggcc tgatccacgc cctcacagct gaaacgcgag ccagagcaca agcccttcgg
      481 ccaggtcgcg cacgaaaccc ggcggcttcg cgcgatacgg ggtcgcgctg cgtttctcgg
      541 cgtcgatcca cgcggcgaag cggcgcacgt cgctcgggcg atagaacgcc accatcaact
      601 cgtagttgag gaagagactg cgcgcgtcga ggttggccga gccgacgagc gcgagcgcgt
      661 cgtcgaccac gaccgccttc gcgtgcacca tgtgggcggt ttgccagacc cggcctccgg
      721 ccctcgcgag gtcgcgcagc gggcgattgc gtgccacgtc cgcgaggcgg tggttcgagc
      781 gcgccggcag caccaggtcg accgcgacgc cgcgacgcgc cgcgaggctg agcgccatca
      841 gcagcgtcgc atcgggcacg aagtaaggcg tgaccgcgag gatgcgctcg cgcgccatga
      901 atgcgctgga aacgagcagc gcctgcacgg tgtcgtcgat ctggtccgga ccgctcggga
      961 tgagctgggc cagcggcgcg tcgtctgcgt cgtcgccttc gttcgcgacg gcgggcgcga
     1021 cttggcgcga cggcggcggc aagtgcgcgg catagttcca gtccatgtcg aagcgctgct
     1081 gcgcccgccg cccgagcggc ccgctcaggt cgaagctgag gtcgtgccac ggcgcacgcg
     1141 ggttgccagc ctcgcccacg aagtactccg ccgcgagatt gcggccgccg gtccagaagc
     1201 gcgcgccgtc gacgagcaac atcttgcggt ggttgcgcag gttcaggccg cgcaccgccg
     1261 atcgaagcgc cggcacgaac ttcacgacct ccacgccggc cgcgcgcagc gctttcagat
     1321 cgatgtgacc gccgagccag acgccgaaac cgtcgagcag cacgcgcacc cggacgcccg
     1381 cgcgggcgcg ctccatcagc cgctcggcga tctcccggcc gagcgcatcc cgcgccagca
     1441 ggaaggtgca caggtcgatg ctgcgcctgg caccctggat cagttcgcgc agcgcggcga
     1501 gcgcctcggt gccgtcctgg tgaatgcgca gatcgtcgta cccgcttccg ttgtccagac
     1561 ccatggcgcc ggcgagccgg cgcgaccatg cggcgaggtc gtcgcggccg ctcgatcgca
     1621 ccaccgtcga ctcggcgagc gccggcacct gctggccgga gaccttgcgg ctgccgaaca
     1681 tgaagtagag cggcagcgcg acataaggca gcagcgcgag catcacgacc caggcgatcg
     1741 ccgccgaggg atgccggcgc tggtagagcg cacgcgacgc cagcacgtag acgatcaggc
     1801 cgatggccac gacgaggcca tgcagggtca gccagttgcg ctcgagcagg cggagccaca
     1861 tggccggatc aaaacaaaac ccgccgggcc tgcgccgggc gggttgctgc gggaaacgcc
     1921 gcgttcactt cttgcggaac ttgcgcaacg ccgcgatctg cgccgccatc gtggcgaatt
     1981 cgccctgggc cttggcgaaa tcgatatcgc ttttcgcgtt cttcatcgcc tcttcggcga
     2041 gacgcttggc ctcggtggcc ttggcttcat cgagatcctt gccgcggatc gcggtgtcgg
     2101 ccagcaccgt gacgctgccg ggctggactt cgaggatgcc gccggccacg aacacgaatt
     2161 cttcctcgcc gttgtcggca cgcttgatcc gcaccgcacc cggcttgatg cgggtgatca
     2221 gcggcgtgtg acgcggcagg atgccgagct cgccgctttc gcccggcagc gcgacgaact
     2281 gcgcctgacc ggaaaaaatg ctgccttcgg ccgaaacgac gtctacctgc agggtggcca
     2341 tgggggctct ctcgtgtgag gtgtgtgggg atgacccgtt cgcttactgg accttcttcg
     2401 ccttctcgat cgcctcgtcg atggtcccga ccatgtagaa cgcctgctcg ggcagcgaat
     2461 cgcactcgcc gttggcgatc atcttgaagc cgcggatggt ttccttcagc gtcacgtact
     2521 tgccttcgct gccggtgaac acctgggcga cgaagaacgg ctggctcagg aagcgctgga
     2581 tcttgcgggc acgcgcgacc gcgagcttgt cttcgggcgc gagttcgtcc atgccgagga
     2641 tcgcgatgat gtcgcgcaat tccttgtagc gctgcaggat gccctgcacc gcacgcgcgg
     2701 tgtcgtagtg atcctggccg acgacgttcg ggtcgagctg gcggctggtc gaatcgagcg
     2761 ggtcgaccgc cgggtagatg ccgagcgagg cgatgtcgcg cgacagcacg acggtggagt
     2821 cgaggtgggc gaaggtggtc gccggcgacg gatcggtcag gtcgtcggcc ggcacgtaga
     2881 cggcctggat cgaggtgatc gagccgacct tggtcgaggt gatgcgctcc tgcaggcgcc
     2941 ccatttcctc ggcgagcgtc ggctggtagc ccactgccga gggcatccgg ccgagcagcg
     3001 ccgagacctc ggtgccggcg agcgtgtagc ggtagatgtt gtcgacgaag aagagcacgt
     3061 ccttgccttc gtcacggaac gactcggcga tcgtcaggcc ggtgaggccg acgcgcagcc
     3121 ggttgcccgg cggctcgttc atctggccgt agaccatcgc gaccttcgac tcgccgaggt
     3181 tctcgctgtt gacgacgccc gaatccatca tctcgtgata gaagtcgttg ccctcgcggg
     3241 tgcgctcgcc gacgccggcg aatacggaaa ggcccgagtg cgccttggcg atgttgttga
     3301 tcagctccat catgttgacg gtcttgccga cgccggcgcc gccgaagagg ccgaccttgc
     3361 cgcccttggc gaaggggcat acgagatcga tcaccttgat gccggtctca agcagttcct
     3421 ggctggggga cagttcgtcg tacttgggcg ccatgcggtg gatcgaggcg actttctcgg
     3481 cgccgatc
//
LOCUS       DASVHM010000047         2347 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_3059, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000047 DASVHM010000000
VERSION     DASVHM010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3059"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..617
                     /locus_tag="VF308_00885"
     CDS             <1..617
                     /locus_tag="VF308_00885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="squalene/phytoene synthase family protein"
                     /protein_id="HEX7435239.1"
                     /translation="PSHPAMKALMPHTAAYSIAAEHLFAVIEGCEMDLQQSRVLDYAG
                     LERYCHLVAGVVGEVASNIFGRTEASTIGYAHTLGVAMQLTNIIRDVGDDARRGRIYI
                     PVSELREFDVKAQEILNRSYSERFTRLMQFQAARAHHAYDDAYAQLGDADRRAQKPGL
                     MMGNIYRTLLREIEADNFQVLHQRVALTPLRKLWIAMRTNWRGH"
     gene            617..1894
                     /gene="hpnE"
                     /locus_tag="VF308_00890"
     CDS             617..1894
                     /gene="hpnE"
                     /locus_tag="VF308_00890"
                     /EC_number="1.17.8.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxysqualene dehydroxylase HpnE"
                     /protein_id="HEX7435240.1"
                     /translation="MPAGRAVAVIGGGWAGLAAAIEATRRGDRVTLFEMAPQLGGRAR
                     EVVVEGLALDNGQHICIGAYRETLGLLREIGIAEADVFMRTPLRLMGADGAGLALRGG
                     PPMLAFAAAVLRHPTWRWREKIALLGAAGGWLTSGFRCDPLLTVARLTIDLPPVVRAE
                     LIEPLCVAALNTAADAASARVFLRVLGDALFGGRGSADLLLPRVSLSETLPAPAARWL
                     DGAHAAIRLRHRVDSLAADGDAWRVDGERFEAAVLAAAPPESARLARPIAPAWADATM
                     ELQYEPIVTVYMRSPATVLPEPMLALRGDAANPAQFVFDRGQLGGPAGLLAFVASGAG
                     AWVEAGAASTLAATRRQAESALGRWLRAPLEAVQVVTERRATFRCTPDLHRPGLNIAR
                     RLCAAGDHVDGPYPSTLEGAVRSGLAAARALWQ"
     gene            1930..>2347
                     /locus_tag="VF308_00895"
     CDS             1930..>2347
                     /locus_tag="VF308_00895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX7435241.1"
                     /translation="MAKNESRAVTIQVLERMFKLLDLLAAHQDPVSLKSISEQTGLHP
                     STAHRILNDLTIGRYVDRPEAGSYRLGMRMLEMGNLVKARLDVRDAALSPMRELHKLT
                     HQPVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRA"
BASE COUNT          354 a          821 c          812 g          360 t
ORIGIN      
        1 atccgagcca cccggccatg aaggcgctaa tgccgcacac cgccgcctat tcgattgcag
       61 ccgagcacct tttcgcggtc atcgagggct gcgaaatgga tctgcagcag tcgcgagtcc
      121 tcgactacgc gggcctcgag cgctactgcc atctggtcgc gggcgtggtc ggcgaggtcg
      181 cctcgaacat cttcgggcgt accgaggcca gcaccatcgg ctacgcgcac acgctcggtg
      241 tggccatgca actgaccaac atcatccgcg atgtcggcga cgatgcgcgc cgcgggcgca
      301 tctacatccc ggtctcggaa ctgcgcgaat tcgacgtcaa ggcgcaggaa atcctgaatc
      361 gcagctacag cgagcgcttc acccgattga tgcagtttca ggccgcccgt gcccaccatg
      421 cgtacgacga cgcctatgcg cagctgggcg atgcggatcg acgcgcccag aagccgggcc
      481 tgatgatggg caacatctac cgcaccctgt tgcgcgagat cgaggccgac aatttccagg
      541 tcctgcacca gcgggtcgcg ttgacgccgc tgcgaaagct ctggatcgcg atgcgcacca
      601 actggcgcgg gcactgatgc cggcaggtcg cgcggtcgcc gtgatcggcg gcggctgggc
      661 cggtctcgcc gcggcgatcg aagcaacgcg ccgtggcgac cgggtcacgc tcttcgagat
      721 ggcgccgcag ctcggcgggc gcgcgcgcga agtcgtggtc gaggggctcg ccctcgacaa
      781 cggccagcac atctgcatcg gcgcctaccg cgagacgctc gggctcctgc gcgagatcgg
      841 catcgccgaa gccgatgtct tcatgcgcac gccgctgcgg ctgatgggcg ccgacggggc
      901 cggtctcgcg ttgcgcggcg gccccccgat gcttgccttc gccgcagcag tccttcgcca
      961 cccgacttgg cgctggcgcg aaaagatcgc gttgttgggt gcggcggggg gctggctgac
     1021 gtcgggattt cgctgcgatc cgcttctgac ggtcgcccgc ctgaccatcg atctgccgcc
     1081 ggtcgtgcgc gccgagctga tcgagccgct ctgcgtcgcg gcattgaaca cggcggccga
     1141 tgcggccagt gcgcgggtct tcctgcgcgt gctcggcgac gcgctgtttg gcgggcgcgg
     1201 ctcggccgac ctgctgctgc cccgggtgag cctgagtgaa acgctgcccg caccggcggc
     1261 gcgctggctc gacggggcgc acgccgcgat ccggctgagg caccgcgtcg acagcctcgc
     1321 ggcggacggc gacgcctggc gcgtcgacgg agaacgcttc gaggccgcgg tgctcgccgc
     1381 cgcgccgccg gaatcggccc gcctggctcg gccgattgcg ccggcttggg ccgacgcgac
     1441 catggagctg caatacgagc cgatcgtcac cgtgtacatg aggagccccg caacggtgct
     1501 gcccgagccg atgctggcat tgcgcggcga cgcggcgaat ccggcgcagt tcgtcttcga
     1561 tcggggccag ctcggcggcc ccgcggggct gctcgccttc gtggccagcg gcgccggcgc
     1621 ctgggtcgaa gccggcgccg cgtcgacact cgccgcgacc cggcgccagg ccgagtcggc
     1681 gctcggtcga tggctgcgcg cgccgctcga agcggtgcag gtcgtgaccg aacggcgcgc
     1741 cacatttcgc tgcacgcccg acctgcaccg gcccggattg aacatcgcga gacgactttg
     1801 cgccgccggc gaccacgtcg acggacccta cccttcgacg ctggaaggtg cggtgcgctc
     1861 gggcctggcg gcggcacgcg cgctttggca atgaggccga ccaggccgat aggtgcgtca
     1921 gaatcgggta tggccaagaa cgagtcgaga gcggtcacga tccaggtgct cgagcgcatg
     1981 ttcaaattgc tcgacctgct cgccgcgcat caggatccgg tgtcgctgaa atcgatcagc
     2041 gaacagaccg gcttgcaccc gtcgaccgcc catcgcatcc tcaacgacct gacgatcggc
     2101 cgctatgtcg atcggccgga agcgggcagc taccgcctcg gcatgcgcat gctggagatg
     2161 ggcaacctcg tcaaggcgcg cctcgacgtg cgcgacgcgg ccctgtcacc gatgcgcgaa
     2221 ctccacaagc tcacccatca gccggtgaac ctctcggtgc gccagggcga cgagatcgtc
     2281 tacatcgagc gtgcctacag cgagcgctcg ggcatgcagg tcgtgcgcgc aatcggcggt
     2341 cgcgctc
//
LOCUS       DASVHM010000048         1700 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_219879, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000048 DASVHM010000000
VERSION     DASVHM010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219879"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..>1700
                     /locus_tag="VF308_00900"
     CDS             162..>1700
                     /locus_tag="VF308_00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013722884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HEX7435242.1"
                     /translation="MITWLREDGVIGADDAERTIRRFAGTNSTQHPLIRLASAGLVRL
                     PGTKVLDVENLTEWLARRCGIAYLRIDPLKVDVGRVAEVMSITYAERRHALPLQVGAT
                     EVTIATCEPLDIGWVAEIEGHTRKAVKLVLVSPPEIARYTTEFYSLSRSVRAAIKMGE
                     TSAIANFEQLVELGKSNKQLDANDSGVIQVVDWLWQYAFDQRASDIHLEPRRERSVIR
                     FRIDGVMHTVYQLPPGVMSAMVARVKLLGRMDVIERRRPLDGRIKTRNPAGDEVEMRL
                     STIPTAFGEKMVMRIFDPDTTVKTLDNLGFGSHDGKRWEALVAKPHGIILVTGPTGSG
                     KTTTLYSTLRRLATDEVNVCTIEDPIEMIQPAFNQTQVQSVLELNFAEGLRALMRQDP
                     DIIMVGEIRDLPTADMAIQASLTGHLVFSTLHTNDSASAITRLNDLGVAPYLIGSTLI
                     GVLAQRLVRTLCNACKQPDEAVTRETLPDKVYQAKAKGCDKCHGRGYHGRVGVFELLT
                     ISEEL"
BASE COUNT          309 a          605 c          536 g          250 t
ORIGIN      
        1 gacccgaagt cctcacgccg ctgcccgact cggtcggtcg ctcgtcgccg cgcgaggcga
       61 gccacgaaga gcagaagggg gcaacgccgc cgccggcgaa gaacacggtc agcctcgcca
      121 cggcgcgcag cagccacggc aacaagctcg actggcgctc gctgatcacc tggctgcgcg
      181 aagacggcgt gatcggcgcc gacgacgccg agcggacgat ccggcgtttc gccggcacca
      241 acagcacgca gcacccgcta attcgcctgg cgagcgcggg cctcgtgcgc ctgcccggaa
      301 ccaaggtgct cgatgtcgag aacctcaccg aatggctggc ccggcgctgc ggcatcgcct
      361 acctgcgcat cgatccgttg aaggtcgacg tcggccgcgt cgccgaggtc atgtcgatca
      421 cctatgccga gcgccgtcat gccctgccgc tgcaggtggg tgcgaccgag gtgacgatcg
      481 cgacctgcga gccgctcgac atcggctggg tcgccgagat cgagggccat acccgcaagg
      541 cggtgaagct ggtcctggtg agcccgcccg agattgcgcg ctataccacc gagttctact
      601 cgctctcgcg ttcggtccgc gccgccatca agatgggcga gacctcggcc atcgccaact
      661 tcgaacagct cgtcgagctc ggcaagagca acaagcagct cgacgccaac gactccggcg
      721 tgatccaggt cgtcgattgg ctctggcaat acgccttcga ccagcgcgcc tccgacatcc
      781 acctcgagcc gcgccgcgaa cgcagcgtga tccgctttcg catcgacggc gtgatgcaca
      841 cggtctacca gttgccgccg ggcgtgatga gcgcgatggt ggcgcgcgtc aagctgctcg
      901 gtcggatgga cgtgatcgag cggcgccgtc cgctcgacgg ccgcatcaag acacgcaacc
      961 cggccggcga cgaggtcgag atgcgcctgt cgacgatccc gaccgcgttc ggcgagaaga
     1021 tggtcatgcg catcttcgat cccgacacca ccgtcaagac gctcgacaac ctcggcttcg
     1081 gcagccacga cggcaagcgc tgggaagcgc tcgtcgccaa gccgcacggc atcatcctcg
     1141 tcaccggtcc gaccggttcg ggcaagacga cgacgctcta ctcgaccctg cgccgcctcg
     1201 cgaccgacga ggtcaacgtc tgcacgatcg aagacccgat cgaaatgatc cagcccgcgt
     1261 tcaaccagac gcaggtgcag tcggtcctcg aactcaactt tgccgagggc ctgcgcgcct
     1321 tgatgcgcca ggatccggac atcatcatgg tgggcgagat ccgcgacctg ccgaccgccg
     1381 acatggcgat ccaggcctcg ctcacgggcc accttgtctt ctcgacgctg cacaccaacg
     1441 actccgcgtc ggcgatcacg cgcctcaacg acctcggcgt cgccccgtac ctgatcggct
     1501 cgacgctgat cggcgtgctc gcgcagcggc tcgtgcgaac gctctgcaac gcgtgcaagc
     1561 agcccgacga ggcggtgacg cgcgagacgc tgcccgataa agtctatcag gccaaagcca
     1621 agggctgcga caaatgccac gggcggggct atcacgggcg cgtcggcgtt tttgagctcc
     1681 tgaccatcag cgaggaactg
//
LOCUS       DASVHM010000049         4208 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1229386, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000049 DASVHM010000000
VERSION     DASVHM010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4208
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1229386"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..583)
                     /locus_tag="VF308_00905"
     CDS             complement(<1..583)
                     /locus_tag="VF308_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018058034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEX7435243.1"
                     /translation="MTYLAKPRLHHPTLPANKLGLTRRDYEGKISTLCAGCGHDSISA
                     ALVQACWELDIEPHRVAKLSGIGCSSKTPDYFLGDSHGFNTVHGRMPSVLTGANLANR
                     ELLYLGVSGDGDSASIGLGQFAHAMRRGVNMTYIVENNGVYGLTKGQFSATADQGSKS
                     KKGVVNTDTAIDLVALALQLGASYVGRSFSGDKE"
     gene            complement(580..2451)
                     /locus_tag="VF308_00910"
     CDS             complement(580..2451)
                     /locus_tag="VF308_00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018058033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HEX7435244.1"
                     /translation="MTSNVRAGTAPRIEAVNDFVIKFANVNGSGSASANELFARSLLR
                     MGVPVSPRNIFPSNIQGLPTWYEVRVNEHGYLARRGGVDLMVAMNPQTWESDIAEIEP
                     GGYLLYDSSKPLPPARFRDDIYVLGVPLTDLCATRYTDPRERQLLKNIVYVGVLAAML
                     GVEPEVIATLLGEQYQGKTKLLQPNLDAFMMGLHHGNEYFDDALGLKIERRDAVGKRI
                     FIEGNAAAALGCVYGGATVCAWYPITPSSSLAEAFQKYCSRLRVDKASGKNKFAIVQA
                     EDEIASIGIVVGAGWNGARAFTTTSGPGVSLMTEFIGLAYFAEIPVTIINVQRGGPST
                     GMPTRTQQADLLSCAYASHGDTKHVLLFPEDPRECFDFAAQSLDLADRLQTPVFLMSD
                     LDIGMNHRLCEPLAWDDSRTYDRGKVMSAEELEAGKDFGRYLDVDGDGIPYRTLPGTH
                     PSKGAYFTRGTTRDAYANYSEAGPDYLYNVTRLQKKFETAKELVPQPVLRKAARETRF
                     GAIYYGSTSPAMAEAFDALQARGVHIDALRVRAFPFGAAVDRFIAEHETVFVIEQNRD
                     AQLRMMLVNEQEVNPAQLEPILHYDGTPITARFIIDAIARRMRADNVEPITRKGKAA"
     gene            complement(2448..>4208)
                     /locus_tag="VF308_00915"
     CDS             complement(2448..>4208)
                     /locus_tag="VF308_00915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018058032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7435245.1"
                     /translation="AHTPVPEYIRLIAAGRYTDAYLVNWESNVFPGILGRTCDRPCEP
                     ACRRGRVEEAQAAKPEPVAICRLKRVAADFKDDITEHLPRIAARNGKRIACVGAGPAS
                     LTVARDLAPLGYEVVVFDGDAQAGGMIRSQIPRFRLPEEVIDEETGYVLKLGVDFRGG
                     TRIDSMRALLTENWDAVFVGSGAPRGRDLDIPGRKEAAARIHIGIDWLSSVSFGHVTS
                     IGKRVIVLGGGNTAMDCCRSSKRLGGSEVKVIVRSPFEEMKASPWEKEDAIHEGIPIL
                     DCLVPKAFIHSDGKLTGMSFDKVRAVRDAKGKRQLVSTGEPEQVFQCDDVLVAVGQEN
                     AFPWIERDTGVAFDEWGMPVLDPTTLQSSLPRVFFGGDAALGPKNIIWAVAQGHAAAI
                     SIDKFLHGEDVQKRPAPGVTLVSQKMGIHEWSYDNDITPELRHKVPWRDVNQSLRNIK
                     VEVELGFDVATAWKEAQRCLNCDVQTVFATSQCIECDACVDICPTDCITFTANGDEAD
                     LRTRLRAPARHADQALYVSDALKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQKFTVS
                     QTRAGSGCRSAAPKKVLALT"
BASE COUNT          621 a         1367 c         1483 g          737 t
ORIGIN      
        1 gttccttgtc gcccgaaaaa ctccggccga cgtaactcgc gccgagctgc agcgccagcg
       61 cgacgagatc gatcgcggta tcggtgttga caacaccctt cttgctcttg ctgccctggt
      121 cggcggtggc agagaactgg cccttggtga ggccgtagac gccgttgttc tcgacgatgt
      181 aggtcatgtt gacgccgcgc cgcatcgcgt gcgcgaactg gccgaggccg atcgaggccg
      241 agtcgccgtc gccgctcacg cccaggtaca gcagctcgcg attcgcgagg ttggcgccgg
      301 tcagcaccga gggcatgcgg ccgtgcacgg tgttgaagcc gtgcgagtcg ccgagaaaat
      361 agtcgggcgt cttcgacgag cagccgatgc cggagagctt ggccacgcgg tgcggctcga
      421 tgtcgagttc ccagcacgcc tgcaccagcg ccgccgagat cgaatcgtgg ccgcagccgg
      481 cgcacagcgt cgagatcttg ccttcgtagt cgcgccgcgt gaggccgagc ttgttggccg
      541 gcagggtcgg gtggtgcagc ctgggcttgg cgagataggt catgccgcct tccccttcct
      601 ggtgatcggc tcgacgttgt cggcgcgcat gcgcctggcg atggcgtcga tgatgaagcg
      661 cgccgtgatc ggcgtgccgt cgtagtgcag gatcggttcc agctgcgccg ggttcacctc
      721 ctgctcgttg accagcatca tgcgcagctg cgcatcgcgg ttctgctcga tcacgaacac
      781 cgtctcgtgc tcggcgatga agcggtcgac cgcggcgccg aacggaaatg cgcgcacgcg
      841 cagcgcatcg atgtgcacgc ctcgtgcctg cagggcatcg aaggcctcgg ccatcgccgg
      901 gctggtcgag ccgtagtaga tcgcgccgaa gcgcgtctcg cgcgccgcct tgcgcaagac
      961 aggctggggc accagttcct tcgcggtctc gaacttcttc tgcagccgcg tcacgttgta
     1021 caggtagtcg ggcccggcct ccgaatagtt cgcataggcg tcgcgcgtcg tgccgcgggt
     1081 gaagtaggcg cccttgctcg ggtgcgtgcc gggcagtgtg cggtagggaa tgccgtcgcc
     1141 gtcgacatcg aggtagcggc cgaaatcctt gccggcctcg agctcttcgg cgctcatcac
     1201 cttgccgcgg tcgtaggtgc gcgagtcgtc ccacgcgagc ggctcgcaca ggcggtggtt
     1261 catgccgatg tcgaggtcgc tcatcaggaa caccggcgtc tgcaggcggt cggcgaggtc
     1321 gagcgactgc gccgcgaagt cgaagcattc gcgcgggtct tcggggaaaa gcagcacgtg
     1381 cttggtgtcg ccgtgcgagg cgtaggcgca actcagcagg tcggcctgtt gcgtcctcgt
     1441 cggcatgccg gtcgaggggc cgccgcgctg cacgttgatg atggtcaccg ggatctcggc
     1501 gaagtaggcc aggccgatga actcggtcat cagcgaaacg cccgggcccg aggtggtggt
     1561 gaaggcgcgc gcgccgttcc agcccgcgcc gacgacgatg ccgatcgaag cgatctcgtc
     1621 ctcggcctgc acgatcgcga acttgttctt gccgctggcc ttgtcgacgc gcaacctgga
     1681 gcagtacttc tggaacgcct cggcgagcga cgaactcggc gtgatcggat accaggcgca
     1741 caccgtggcg ccgccgtaca cgcagccgag cgcggccgcg gcgttgcctt cgatgaagat
     1801 gcgcttgccg accgcgtcgc gccgttcgat cttcaggccg agcgcatcgt cgaaatactc
     1861 gttgccgtgg tgcaggccca tcatgaaggc gtcgaggttg ggctggagca gcttggtctt
     1921 gccctggtac tgctcgccga gcagcgtcgc gatgacctcg ggctcgacgc ccagcatcgc
     1981 cgccagcacg ccgacgtaga cgatgttctt cagcagctgg cgctcgcgcg ggtcggtgta
     2041 gcgcgtcgcg cagaggtcgg tgagaggcac gccgaggacg tagatgtcgt cgcggaaacg
     2101 cgccggcggc agcggcttgg agctgtcgta gagaaggtag ccgccgggct cgatctcggc
     2161 aatgtcgctt tcccaggtct gcgggttcat cgccaccatc aggtcgacgc cgccgcgccg
     2221 cgccaggtag ccatgctcgt tgacgcgcac ctcgtaccag gtcggcagcc cctggatgtt
     2281 cgacgggaag atgttgcgcg ggctgaccgg cactcccatg cgcaacaggc tgcgcgcgaa
     2341 caactcgttc gccgacgccg agcccgagcc gttgacgttg gcgaacttga tgacgaaatc
     2401 gttgacggct tcgatccggg gcgccgtgcc cgccctcacg ttgctcgtca tgtcagcgcg
     2461 aggaccttct tgggtgcggc gctgcggcag ccactgcccg cgcgcgtctg ggagacggtg
     2521 aacttctgca tgtcccaggc gccggtcggg cagcgctcgg cgcacaggcc gcagtgcagg
     2581 cagacgtctt catccttgac catcacccgg ccggtcttca gcgcgtcgga gacgtagagc
     2641 gcctggtcgg cgtggcgcgc cggcgcgcgc aggcgggtgc gcaggtcggc ctcgtcgccg
     2701 ttggcggtga aggtgatgca gtcggtcggg cagatgtcga cgcaggcgtc gcactcgatg
     2761 cactggctgg tcgcgaagac ggtctgcacg tcgcagttga ggcagcgctg cgcttccttc
     2821 caggcggtcg cgacgtcgaa gccgagctcg acctcgacct tgatgttgcg cagcgactgg
     2881 ttgacgtcgc gccagggcac cttgtggcgc agctcgggcg tgatgtcgtt gtcgtagctc
     2941 cactcgtgga tgcccatctt ctgcgagacg agggtcacgc ccggggcggg gcgcttctgg
     3001 acatcttcgc cgtggaggaa cttgtcgatc gagatcgccg ccgcgtgccc ttgcgcgacc
     3061 gcccagatga tgttcttcgg gccgagggcg gcgtcgccgc cgaagaagac gcgcggcagg
     3121 ctcgactgca gcgtcgtcgg gtcgaggacc ggcattcccc attcgtcgaa ggcgacaccc
     3181 gtgtcgcgct cgatccaggg gaacgcgttc tcctggccga ccgcgacgag aacgtcgtcg
     3241 cactggaaga cctgctcggg ttcgccggtc gagacgagct ggcgcttgcc cttggcgtcg
     3301 cgcaccgcgc gcaccttgtc gaaactcatg ccggtgagct tgccgtcgct gtggatgaag
     3361 gccttcggca cgaggcagtc gaggatcggg atgccttcgt ggatcgcgtc ttccttttcc
     3421 cacggcgacg ccttcatctc ctcgaacggc gagcgcacga tcaccttgac ttcgctgccg
     3481 ccgagccgtt tcgagctgcg gcagcagtcc atcgccgtgt tgccgccacc gaggacgatg
     3541 acgcgcttgc cgatcgacgt cacgtggccg aacgagaccg acgacagcca gtcgatgccg
     3601 atgtggatgc gcgccgccgc ctccttgcgc cccggaatgt cgagatcgcg gccgcgcggc
     3661 gcgcccgagc cgacgaagac ggcgtcccag ttctcggtga ggagggcgcg catcgaatcg
     3721 attcgcgttc cgccgcgaaa gtcgacgccg agcttcagca cgtagccggt ctcctcgtcg
     3781 atcacttcct cgggcaggcg aaaccgcggg atctgcgagc ggatcatgcc gccagcctgg
     3841 gcgtcgccgt cgaagacgac gacctcgtag ccgagcggcg cgagatcgcg tgcgaccgtc
     3901 agcgacgccg ggccggcgcc gacgcaggcg attcgcttgc cgttgcgcgc ggcgatgcgc
     3961 ggcaggtgtt cggtgatgtc gtccttgaag tcggcggcga cgcgcttcag ccggcagatc
     4021 gccaccggct cgggcttggc cgcctgcgct tcctcgaccc ggccgcgccg gcacgccggc
     4081 tcgcagggac ggtcacaggt acggcccagg attccgggaa agacgttcga ttcccagttg
     4141 acgaggtacg cgtcggtgta gcggccggcc gcgatgaggc ggatgtattc ggggaccggg
     4201 gtgtgggc
//
LOCUS       DASVHM010000050         1650 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1013684, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000050 DASVHM010000000
VERSION     DASVHM010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1013684"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..369
                     /locus_tag="VF308_00920"
     CDS             106..369
                     /locus_tag="VF308_00920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009769531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2164 domain-containing protein"
                     /protein_id="HEX7435246.1"
                     /translation="MSIEINKDARAEAIRSIERYFEVNFEERIGNIQAAALLNFFLEE
                     IGPSVYNTAVAAAQERMQMRAQELDIECHEDEFRYWHKFDRKR"
     gene            383..1255
                     /locus_tag="VF308_00925"
     CDS             383..1255
                     /locus_tag="VF308_00925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435247.1"
                     /translation="MTEFDTFLEAAWADHADRADAVADRLGASLHFVQTAEQVARYAA
                     LVTHVFGEHLGNGARGIALLESLGALRAAADSSDATRALARNIAALRHAAGDPVESAA
                     LPHEDRVSALAMAASICAARSEFAKGLDAYAEALRQADAGLLEGTSALRALAVAGNNL
                     AAALEEKKDRDPRETARMVDAAREVLKHWKLAGTWLEEERAQYRLARSLLQAGAAEAA
                     ADSARRCVEVCERHDAPAFERFFGHAVLALAQRGAGDPVAFEASRAQARDWFEQVSNE
                     ERPWCDAELKELAG"
     gene            1308..>1650
                     /locus_tag="VF308_00930"
     CDS             1308..>1650
                     /locus_tag="VF308_00930"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020749996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HEX7435248.1"
                     /translation="MKLIGMLDSPYVRRVAISFQLLGLPFAHRSVSVFRAFEEFQRIN
                     PVVKAPTLVCDDGEVLMDSTLILDYAEALAAPRKSLMPSGVSARQHALRRIGLALAAC
                     EKSVQIVYERNL"
BASE COUNT          286 a          569 c          559 g          236 t
ORIGIN      
        1 cgaaggcgtc ggccgtggcg gctgcggctc gccaccgaac gagaacggca tgaaaatgcg
       61 caccgggtag acgcccggcc gaggccgatc gacaacgacg acagcatgag catcgaaatc
      121 aacaaggacg cgcgcgccga ggcgatccgc tcgatcgagc gctatttcga agtcaacttc
      181 gaagagcgca tcggcaacat ccaggccgcc gcgctgctca acttctttct cgaggaaatc
      241 ggtccgagcg tgtacaacac cgccgtcgcg gccgcgcagg agcgcatgca gatgcgcgcc
      301 caggagctcg acatcgaatg ccatgaagac gagttccgct actggcacaa gttcgatcgc
      361 aagcgctgag gagccgcatc cggtgaccga attcgacact ttcctcgagg ccgcctgggc
      421 cgatcacgcc gaccgggccg acgccgttgc cgaccggctc ggcgcctcgc tgcacttcgt
      481 ccagacggcg gagcaggtcg cacgctatgc ggcgctcgtc acccacgtgt tcggcgaaca
      541 tctcggcaac ggagcgcgcg gtatcgcgct gctcgaatcg ctgggtgccc tgcgcgccgc
      601 cgccgacagc agcgacgcca cgcgggcgct ggcccgcaac atcgcggcgc tgcgccacgc
      661 cgcgggcgat ccggtcgagt ctgcggcgct cccgcatgaa gaccgggtgt ccgcgctcgc
      721 catggcagct tcgatctgcg cggcccgcag cgaattcgcc aaaggcctcg atgcctacgc
      781 agaagccttg cgccaagccg atgccgggct gctggaaggt acttccgcgt tgcgcgcgct
      841 cgcggtcgcg ggcaacaacc tcgccgcggc gctggaggaa aaaaaggatc gtgacccgcg
      901 cgagacggcc cgcatggtcg acgccgcccg agaggtgctg aagcactgga agctcgccgg
      961 cacctggctc gaagaagaac gggcccagta ccgcttggcg cgcagcctgc tgcaggccgg
     1021 agcggcggaa gcggcggccg acagcgcacg gcgctgcgtc gaggtctgcg agcgccacga
     1081 cgcgccggcg ttcgagcggt tcttcggcca cgcggtgctc gccctcgcgc agcgcggcgc
     1141 cggagacccg gtcgccttcg aagcgtcgcg cgcgcaagcc cgggactggt tcgagcaggt
     1201 ctcgaacgaa gagcggccct ggtgcgacgc ggagctcaag gaactcgcgg gttgatcgct
     1261 cgccatcgcc ccgcaaccac cgaccgattc gaccaacagg agacgctgtg aaattgatcg
     1321 gcatgctcga ttcgccctac gtgcggcgtg tcgcgatttc cttccagctc ctgggcctgc
     1381 cgttcgcgca ccgatcggtg tcggtgttca gggccttcga ggaattccag cgcatcaacc
     1441 cggtcgtgaa ggcgccgacg ctcgtctgcg acgacggcga ggtgctgatg gattcgaccc
     1501 tgatcctcga ctacgccgag gcgctcgcgg caccgcgcaa gagcctgatg ccttcgggcg
     1561 tgagcgcgcg ccagcatgcg ctgcgccgca tcgggctcgc gctggcggcg tgcgagaaga
     1621 gcgtgcagat cgtctacgag cgcaatctgc
//
LOCUS       DASVHM010000051         3219 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_220085, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000051 DASVHM010000000
VERSION     DASVHM010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3219
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220085"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(368..1471)
                     /locus_tag="VF308_00935"
                     /pseudo
     CDS             complement(368..1471)
                     /locus_tag="VF308_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005668095.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
     gene            complement(1623..2027)
                     /locus_tag="VF308_00940"
     CDS             complement(1623..2027)
                     /locus_tag="VF308_00940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX7435249.1"
                     /translation="MPATSRGSCLCGAVSFVATLPSKWVAHCHCTRCRRAHGAPFVTW
                     AGFAADAVTVGDEQAHLRWHIAAEGGARGFCGHCGSPMFFKSDRWPGELHIARALFVE
                     PIDRAPQAHVFYETHVEWAAVGDDLPKKSSSP"
     gene            complement(2040..2171)
                     /locus_tag="VF308_00945"
     CDS             complement(2040..2171)
                     /locus_tag="VF308_00945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435250.1"
                     /translation="MRGEKHPNEVADLPSLDRRMVKLDGKVTIYRLSEGKRFDEVGA"
     gene            complement(2182..2598)
                     /locus_tag="VF308_00950"
     CDS             complement(2182..2598)
                     /locus_tag="VF308_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019922385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016846 - carbon-sulfur lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX7435251.1"
                     /translation="MPRKTYHGSCHCGNVRYAAAVDLSLGTAKCNCSICMKMRIWHVI
                     FKAKHFSLLSNPELMGEYQWLPAGREKSRMHYFFCKTCGVPLFAWGDFPDGRYYAIQV
                     TTLDDVDADELAAAPGKYEDGRHDRFDRVPTDIRLL"
     gene            complement(2638..3027)
                     /locus_tag="VF308_00955"
     CDS             complement(2638..3027)
                     /locus_tag="VF308_00955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX7435252.1"
                     /translation="MTEHPLETWHRLVRTQDASGLNALLADDAVFYSPVVRAPQRGRK
                     LAARYLAAAFQVFFNPTFRYVREIAGASDAMLEFETDIDGVQVNGVDLIKWNGAGQIV
                     EFKVMLRPLKAINVIHQRMAAMLQADQ"
     gene            complement(3024..>3219)
                     /locus_tag="VF308_00960"
     CDS             complement(3024..>3219)
                     /locus_tag="VF308_00960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007859237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435253.1"
                     /translation="YLLALGVLLAGVGRLVSIAQVGLPAPPALWLGYLVPELVLPFVI
                     ATSHWASARGTETKPRETHA"
BASE COUNT          537 a         1033 c         1098 g          551 t
ORIGIN      
        1 cagttcctcg ccgggttgag ccatgcagac cggcgccgcc gcgaagacga ccgacaacca
       61 cactcggccc attcgaaccg ccccatagtg gcaagtcgcg ccgagcatca ggcgggcacc
      121 ttttcgcgca ccgcggaatg ctagcgccat ggcgccgtcg gcggcgagcc cgacggcgcg
      181 gcgctcacga cgtcttcgcc gccgcttcgg cgaggcgctt cttctcgcgc agcgccgcga
      241 gctgggcctc ctcgcgctga cggcgctcgt cctgcgcctt cgtcttctgc tggaaatcgc
      301 gctcctcgag atcggcgggc tgcgtcatcg gattgagcgc caggccgccg aagtcggtcg
      361 cctgcggctc gccgcgcttg ctcttcagct tgatgttcat gcgcagctcg ttggtcgagt
      421 cggcattgcg cagcgcctcg tcgaagccga tcaggccggc gtcgtagagg tcgaagagcg
      481 ccgcgtcgaa ggtgcacatg ccgagctcgc gcgagcgcgc catgatcgtc ttgatctcgt
      541 ggaactcgcc ctggaagatt cgctcggcga tggtcggcgt gttgagcagg atctcgatcg
      601 ccgccgagcg gcccttcccg tcctcgcgcc ggaccagccg ctgcgagacg atcgcgcgca
      661 ggttggccga gaggtccatc agcagttgct tcctccggtc ttccgagaag aagttgatga
      721 tccgctcgat cgtttggctg gcgctgttgg cgtgcagcgt cgccaggcag aggtggccgg
      781 tctcggcgaa ggcgatggcg tgctccatcg tctcggcgtc gcggatctcg ccgaccagga
      841 tcacgtcggg cgcctggcgc agcgtgttct tcagcgcgtg gtgccacgag tgcgtgtcga
      901 tgccgacctc gcggtgcgtc accagcgaaa gctgcgacgg atgcacgtac tcgaccggat
      961 cctcgacggt gatgatgtgc cccggcgagg tgcggttgcg atggtcgatc atcgccgcca
     1021 gcgtcgtcga cttgcccgag ccggtggcgc cgacgacgag gacgaggccg cgcttggtca
     1081 tcaccacgtc cttgagcacc ggcggcagct tcagcttctc gaagctcggg atctcggagg
     1141 cgatggtgcg gatcaccatg ccgacgaagc gctgctgcaa gaagacgttg acgcgaaagc
     1201 gcgagacgcc cgggatcgag atcgcgaagt tgcactccat ctccttcgcg aactcggcac
     1261 gctgggtctc gttcatgagg gactgggcga gcatccgcgt cacctcggcg cccagctttt
     1321 gcgtcgtcag cggcttcatc gcgccctgcg acttcatgct cggcggaaag tcggcggcga
     1381 tgaacaggtc ggagccgccg gcctggctca tggtggccag caacttgtgc atgtaggcgc
     1441 gggcttgatc ttcggtgaag gctgcagaca tggtgctccg tgacaaagag aaagcgtcgg
     1501 tccggactgc gaacgcgacg ccgttttggg tgagcacaga gcttgccagc aaaggcccgg
     1561 gcacgtcgat gaggcgccgg gcaaaaaacc acgcttgggg cgggatcaag ggccgagcgt
     1621 gtctaaggcg agctcgactt cttcggcagg tcgtcgccga ccgccgccca ctcgacatgc
     1681 gtctcgtaga agacatgggc ctgcggcgcc cgatcgatcg gctcgacgaa gagcgcgcgg
     1741 gcgatgtgca gctcgcccgg ccagcgatcg gacttgaaga acatggggct gccgcagtgg
     1801 ccgcagaagc cgcgcgcgcc gccttcggcg gcgatgtgcc agcgaaggtg cgcttgctcg
     1861 tctcccaccg tcacggcgtc ggccgcaaag ccggcccacg tcacgaacgg cgcgccgtgc
     1921 gcccgccggc agcgagtgca gtgacagtga gcgacccatt tcgacggcag cgtggcgacg
     1981 aagctcaccg caccgcaaag gcagctgccg cgcgacgtcg ctggcatggc gcgcgtcggc
     2041 taggcgccga cctcgtcgaa gcgcttgcct tcggacaggc ggtagatcgt gaccttgccg
     2101 tcgagcttga ccatgcggcg gtccagcgac gggaggtccg cgacctcgtt cggatgcttc
     2161 tcgcccctca tcagatagac gtcacaggag gcggatgtcg gtggggactc gatcgaagcg
     2221 atcgtgtcgc ccgtcttcgt acttcccggg ggcggcggcg agctcgtcgg cgtcgacgtc
     2281 gtcgagcgtc gtgacctgga tggcgtagta ccggccatcg gggaagtcac cccaggcgaa
     2341 caacggaacg ccacaagtct tgcaaaagaa gtagtgcatt cgcgatttct cgcgacccgc
     2401 gggcagccac tggtactcgc ccatgagctc cggattcgag agcaacgaga agtgcttcgc
     2461 cttgaagatc acgtgccaga tgcgcatctt catgcagatc gagcagttgc actttgccgt
     2521 tcccaggctc aggtcgaccg ccgctgcgta gcgcacgttg ccgcaatggc agctgccgtg
     2581 ataggtcttg cggggcacgg tgttctcctc ggtgagcaag gcgaaaggtc tgcatgctca
     2641 ttgatcggct tgaagcatcg ccgccatccg ctgatggatg acgttgatcg ccttcagcgg
     2701 cctgagcatg accttgaact cgacgatctg acccgcgccg ttccacttga tcagatcgac
     2761 gccgttgacc tgaacgccgt cgatgtcggt ctcgaattcc agcatggcat ccgaagcgcc
     2821 cgcgatctcc cggacatagc ggaaagtggg attgaagaac acctggaacg ccgcggccag
     2881 gtacctggcc gcgagcttcc tgccgcgttg cggcgcgcgg acgacgggcg agtagaacac
     2941 cgcatcgtcc gcgagcagcg cattcaggcc ggaggcgtcc tgggtgcgaa cgaggcggtg
     3001 ccaggtctcg agagggtgtt cggtcatgcg tgcgtctccc tgggtttcgt ctcggtgccc
     3061 cgggcactcg cccagtgaga ggtggcgatg acgaagggca gcaccagctc gggaaccaga
     3121 tagccgagcc acagcgctgg cggcgcgggc aggccgacct gggcgatcga cacgagcctg
     3181 ccgaccccgg cgagcaggac gcccaaagcg agaaggtag
//
LOCUS       DASVHM010000052         2264 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_508705, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000052 DASVHM010000000
VERSION     DASVHM010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508705"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..707
                     /locus_tag="VF308_00965"
     CDS             <1..707
                     /locus_tag="VF308_00965"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006462787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEX7435254.1"
                     /translation="AVTANGQTVGANIESAENFNTEVIKPFDAPFKARAGIAVLRGNL
                     APRGAVIKPSAATPALMVHKGRAVVFESIDDFHARIDDDALDIDENCVMVLKNCGPRG
                     YPGMAEVGNMPLPPKVLKKGITDMVRISDARMSGTAYGTVVLHTAPEAAAGGPLAIVR
                     DGDIIELDVPARRIQLHISDEELARRLADWKAPAPRLASGYWKLYVDHVLQADQGADL
                     DFLVGRRGAFVPRDNH"
     gene            797..1687
                     /locus_tag="VF308_00970"
     CDS             797..1687
                     /locus_tag="VF308_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007868451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxygalactonokinase"
                     /protein_id="HEX7435255.1"
                     /translation="MKRLLAIDWGSSALRGALLDARGSVLEQRSVARGMLTIEPGGFA
                     AVFESNFGDWMDVPDAQCLMAGMVGSKQGWVEAAYCPCPAGLDEVAAALTRIPGQARA
                     IAIVPGVSCEHDGVPDVMRGEEIKIFGALDLLGIDAAVLVLPGTHSKWATVVGGRIDG
                     FSTVMSGEFYGLLRRHSILSRSLAEDDGQLDADAFDQGVARALEGSSLMQTAFSVRTL
                     ALFGRMAAAALPSYLSGLVIGEELRCRPLDGVEQVIVIGAPALAQRFKRALRQRGVGV
                     RLLGEEAGWRGLWAVHQRAL"
     gene            1702..>2264
                     /locus_tag="VF308_00975"
     CDS             1702..>2264
                     /locus_tag="VF308_00975"
                     /EC_number="4.1.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-6-phosphogalactonate aldolase"
                     /protein_id="HEX7435256.1"
                     /translation="MNAPAPIGEKFSTAICRLPLVAILRGLRPVEAVEVGRALVDAGW
                     SLIEVPLNSPEPLESIEALVQAFPEALVGAGTVLTPAAVRDVHAAGGRMVVAPNFNPD
                     VVGESVRLGMACLPGVLSASEAFAALDAGAAALKLFPAEMIPPAAVKALRAVLGPRTL
                     VLPVGGIGLDNIAAYRSAGADGFGIGS"
BASE COUNT          324 a          781 c          822 g          337 t
ORIGIN      
        1 acgcggtcac cgccaacggc cagaccgtcg gcgcgaacat cgagagcgcg gagaacttca
       61 acacggaggt gatcaagccc ttcgacgcgc cgttcaaggc cagggccggg atcgccgtgc
      121 tgcgcggcaa cctggcgccg cgcggcgcgg tcatcaagcc gagcgcggcg acgccggcgc
      181 tgatggtgca caaggggcgc gcggtggtgt tcgagagcat cgacgacttc cacgcccgca
      241 tcgacgacga cgcgctcgac atcgacgaga actgcgtgat ggtgctgaag aattgcggcc
      301 cgcgcggcta ccccggcatg gccgaggtcg gcaacatgcc gctgccgccc aaggtgctga
      361 agaagggcat caccgacatg gtccggatca gcgacgcgcg catgagcggc accgcgtacg
      421 gcacggtcgt gctgcacacg gcgcccgagg ccgccgcggg cggcccgctg gcgatcgtgc
      481 gcgacggcga catcatcgag ctcgacgtac cggcgcgccg catccagctc cacatcagcg
      541 acgaggaact ggcgcgacgc ctggccgact ggaaggcgcc ggcgccccgg ctcgcgagcg
      601 gctactggaa gctctatgtc gaccatgtgc tgcaggccga tcagggcgcc gacctcgact
      661 ttctggtcgg ccggcgcggc gccttcgtgc cgcgcgacaa ccactgagcg tggacgcgag
      721 gcgcgcctgc gcgcggcctt gcgcctcgcg aaggaccggg cgccctgcag gcgcgcccag
      781 gcatgaaggc gggcacatga agcgcttgct ggcgatcgac tggggcagct ccgcgttgcg
      841 cggtgcgctg ctcgacgcgc gcggttcggt gctcgagcag cgttcggtgg cgcgcggcat
      901 gttgaccatc gagcccggcg ggttcgccgc ggtgttcgag tcgaacttcg gtgactggat
      961 ggacgtaccc gacgcgcaat gcctgatggc cggcatggtc ggcagcaagc agggctgggt
     1021 cgaggcggct tattgcccct gcccggcagg gctcgacgag gtcgccgcgg cgctgacccg
     1081 gatcccgggc caggcgcgcg ccatcgcgat cgtccccggc gtctcgtgcg aacatgatgg
     1141 cgtgcccgat gtcatgcgcg gcgaagagat caagatcttc ggcgcgctcg acctgctcgg
     1201 catcgatgct gccgtgctcg tgctgccggg cacgcacagc aaatgggcga cggtcgtcgg
     1261 aggccgcatc gacggctttt cgaccgtcat gagcggcgag ttctacggct tgctgcgccg
     1321 gcattcgatc ctttcgcgca gccttgccga agacgacggc cagctcgacg cggacgcctt
     1381 cgaccagggc gtcgcccgcg cgctcgaagg atcgagcctg atgcagaccg cgttcagcgt
     1441 gcgcacgctg gccctcttcg gccgcatggc cgcggcggcg ctgccgagct atctctccgg
     1501 actcgtgatc ggcgaggagt tgcgctgccg gccgctggac ggcgtggagc aggtgatcgt
     1561 catcggcgcg ccggcactgg cgcagcgctt caaacgcgca ctgcgccagc gcggcgtcgg
     1621 cgtgcggctg ctcggcgaag aggcgggctg gcgcggcctg tgggccgttc accagcgcgc
     1681 gctgtgaggc agggcgaagc catgaacgcg cctgcaccca tcggcgagaa attttcgacc
     1741 gcgatctgcc gcctgccgct cgtcgccatc ctgcgtggcc tcaggcccgt cgaggcggtc
     1801 gaggtcgggc gcgcgctggt cgatgccggc tggagcctga tcgaggtgcc gctcaattcg
     1861 cccgagccac tcgagagcat cgaggccctc gtacaggcgt ttcccgaagc cctggtcggc
     1921 gccggcaccg tgctcacgcc ggccgcggtc cgcgatgtcc acgccgccgg tggccgcatg
     1981 gtcgttgcgc cgaacttcaa tcccgacgtc gtgggcgaat cggtgcgact cggcatggcc
     2041 tgcctgcccg gcgtgctgag cgcgagcgaa gccttcgcgg cgctcgatgc cggcgccgcg
     2101 gccttgaagc tgttcccggc cgaaatgatt cctccggcgg ccgtgaaggc gctcagggcg
     2161 gtgctcggtc ctcgcaccct cgtgctgccc gtcggcggca tcggactcga caacatcgcg
     2221 gcctaccgga gcgcgggcgc cgatggcttc ggcatcggtt cgag
//
LOCUS       DASVHM010000053         3577 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1085365, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000053 DASVHM010000000
VERSION     DASVHM010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3577
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1085365"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            42..512
                     /gene="sucA"
                     /locus_tag="VF308_00980"
                     /pseudo
     CDS             42..512
                     /gene="sucA"
                     /locus_tag="VF308_00980"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="SucA; E1 component of the oxoglutarate
                     dehydrogenase complex which catalyzes the formation of
                     succinyl-CoA from 2-oxoglutarate; SucA catalyzes the
                     reaction of 2-oxoglutarate with dihydrolipoamide
                     succinyltransferase-lipoate to form dihydrolipoamide
                     succinyltransferase-succinyldihydrolipoate and carbon
                     dioxide; incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
     gene            complement(636..2390)
                     /locus_tag="VF308_00985"
                     /pseudo
     CDS             complement(636..2390)
                     /locus_tag="VF308_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776554.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
     gene            complement(2554..3525)
                     /locus_tag="VF308_00990"
     CDS             complement(2554..3525)
                     /locus_tag="VF308_00990"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase family protein"
                     /protein_id="HEX7435257.1"
                     /translation="MPLPAVLRNLPLPIFGAPLFIVSNPKLVIAQCTAGIVGSMPALN
                     ARPAEQLDEWLAEITETLAAHDRAHPERPAAPFAINQIVHKSNDRLEHDLAVCARYKV
                     PIVITSLGARTDVNDAVHGWGGIVMHDVINNAFARKAVEKGADGLVAVAAGAGGHAGV
                     KSPFALVAEIREWFDGPLALAGAIATGGAVLAAQAMGADFAYVGSAFIATDEARVVDA
                     YKQMIVASTSDDIVYSSLFTGVLGNYLKGSIRNSGLDPDALPDSDPTKMSFAGDATKA
                     WKDIWGCGQGIGAIKAVVPAAELVARLASEYEAARAKFGSRRPTLAA"
BASE COUNT          525 a         1175 c         1256 g          621 t
ORIGIN      
        1 agcacctcgc cttcgcttcg ctggtggcga gcggctacgc ggtgcgcctg tcgggcgagg
       61 actcggcgcg cggcaccttc acgcaccgcc acgccgtcct gcacgaccag aaccgcgagc
      121 gctgggacga gggcacgtac acgccgctgc agcacgtcgc cgacggccag gcagcgttcg
      181 tcgtcatcga ctcgctgctt tccgaggagg cggtgctcgg cttcgagtac ggctacgcca
      241 gcgccgagcc gaacacgctc gtcatctggg aggcgcagtt cggcgacttc gtcaacggcg
      301 cgcaggtcgt catcgaccag ttcatcgcct cgggcgaggt gaagtggggc cgcgccaacg
      361 ggctgacgtt gatgctgccg cacggctacg aaggccaagg cccggagcac tcgtcggcgc
      421 ggctcgagcg cttcatgcag ctttcggccg acaacaacat gcaggtcgtc caaccgacgt
      481 cggcgagcca gatcttccac gtcctgcgcc ggcagatggt gcgcatgttc aggaagcccc
      541 tgatcatcat gacgcccaag tcgctgctgc gcgcgaagga cgcgggctcg ccgctcaccg
      601 acttcaccaa gggagagttc aagaccgtca tcggcgagca ccttgtcgac cagcggatgg
      661 accttgaagt tggccgggac ggtcgtgatc cgctcggcga gccgcttcag ctcggcgagc
      721 ggcaaggcgg tgtcggcggc atcggtccac ttcctgccga ggaacggcgt ccagtcgacc
      781 gcgtacttgc tcttgtagtt ggtgagcacc gggtcgtagc tgctcttgcc ggcgtcgagc
      841 gcggcgcgcg tcgccttgac catggagtcg gggccgtcgg ccggcagcac gctctgggcg
      901 acgagcttgt cgccgtagag cttgcgcgtt cccgggtgcg ccgcgatctt cttgtacatc
      961 agcggctgcg tcatcgccgg cgtgtcctgc tcgttgtggc cgagctttct gaagcagacg
     1021 atgtcgacga cgacgtcctt gttgaactcc tggcggtagt cgagcgcgag ctggctgcac
     1081 aggaccacgg cctcgggatc gtcgccgttc acgtgcagca ccggcgcctc gatcatcttg
     1141 acgacgtcgg tgcaatagag cgtcgagcgc gagtcgcggg ggtccgacgt cgtgaagccg
     1201 atctggttgt tgatgacgat gtggaccgtg ccgccggtgt agtagccgcg cgtctgcgcc
     1261 agcgccagcg tctccatgac gaccccctgg ccggcgaagg cagcgtcgcc gtggacgagc
     1321 accggcagga cggtatcgcc ttcggaatcg ccgcggcggt cgaggcgcgc cttcaccgat
     1381 ccctcgacga ccgggttgac gatctcgagg tgcgacgggt tgaacgacag gctcaggtgg
     1441 accgggccgc ctcccgtggt gatgtcgctc gagaagccct ggtggtactt gacgtcgccc
     1501 gagggcaggt tctcgggcgc ggtgtggtcg aactcggcga acaggtcctt cggcatcttg
     1561 ccgagcgtgt tgacgaggac gttgaggcgg ccccggtggg ccatgccgat gacgatttcc
     1621 tggacgccct tgccgccggc gcgctggacg aactcgtcca tcgaggcgat gaagctctcg
     1681 ctgccctcga gcgagaagcg cttctggccg acgtacttgg tgtgcaggta gcgctcgagc
     1741 ccctcggccg cggtcagccg ctccaggatg tggatctttt catcggccgg gaacgtcggc
     1801 ttagagcgga tcgactcgag ccgctgctgc caccagcgct tctcggtcgg ctcggtgcag
     1861 tgcatgtatt ccgcgccgat cgtgccgcag taggtctcgc gcagcgcctg aacgatctga
     1921 cgcagcgtca tctgctcgtc ggtcgtgaag taggtgttcg tggcgctgaa caccatgtcc
     1981 atgtcggcct cgctgaggtc gtagaacgcg ggctcgagct cgggaatcct ggggcgctcc
     2041 tgacgcttca acgggtcgag gtcggcccag cgcgcgccga gcgagcggta ggcggcgatc
     2101 agcgactgga cgtagacctg cttcctcgcg atcgcgaggt cctcgctcga ggcgcggttg
     2161 ccgaaggcgt tggccttggc tcgcagcgcg aacgactcga ccaccggcgc gtgcgccatg
     2221 tcgcgcgcgc ttgtgccgtc ggcagcgggg acgttctgca gcgcgtcgaa gtacgcgcgc
     2281 cacttgtcgg ggactgagcc ggggttgtcg agataggcct cgtacaactc ctcgacgtac
     2341 ggcgcgttgc cgccgaacag gtacgagttc gccctgcttt cctgcatcat cttcgctcac
     2401 ctttcgcacc ggtttccggt gctgcagtgg gttcaacaac cttccgcgct acggcttcgc
     2461 cggctcacgg actagcgacc cggaccgcgc cttgcagcgg cgggcgggaa ggactctcaa
     2521 gtcacgaagg actgtagcac tcgccgacga gtctcatgcc gccagggtgg gccggcgcga
     2581 cccgaacttc gcacgcgccg cctcgtattc gctggccagg cgcgcgacca gctcggccgc
     2641 cggaacgacc gccttgatcg cgccgatgcc ctggccgcag ccccagatgt ccttccacgc
     2701 cttcgtcgcg tcgccggcga agctcatctt ggtcgggtcg ctgtcgggga gcgcgtcggg
     2761 gtcgaggccg gagttcctga tcgagccctt gaggtagttg ccgaggacgc cggtgaacag
     2821 gctcgagtag acgatgtcgt cgctcgtcga ggcgacgatc atctgcttgt aggcgtcgac
     2881 cacgcgcgcc tcgtcggtgg cgatgaacgc cgagccgacg taggcgaagt cggcacccat
     2941 cgcctgcgcg gcgaggaccg cgccgccggt ggcgatcgcg ccggcgagcg cgagcggtcc
     3001 gtcgaaccac tcgcggatct cggcgacgag cgcgaacggg ctcttcacgc cggcatggcc
     3061 gcccgccccc gcggcgaccg cgaccaggcc atcggcgccc ttctcgaccg ctttccgcgc
     3121 gaaggcgttg ttgatgacgt cgtgcatcac gatgccgccc cagccgtgca ccgcgtcgtt
     3181 gacgtcggtg cgcgcgccga gcgaagtgat gacgatcggc accttgtacc gggcgcagac
     3241 ggcgaggtcg tgctcgagcc ggtcgttgct cttgtggacg atctggttga tcgcgaacgg
     3301 cgccgccggc cgctccggat gagcccgatc gtgcgccgcg agcgtctcgg tgatctcggc
     3361 cagccattcg tcgagctgct cggccgggcg cgcgttgagc gccggcatcg agccgacgat
     3421 gccggcggtg cactgggcga tcacgagctt ggggttgctg acgatgaaga gcggcgcgcc
     3481 gaagatcggc aggggcaggt tgcggagaac ggcgggcagc ggcatcgggt tcctcgattc
     3541 ggagggaagc gtcagaacgc gtcgagcgcc atcgccg
//
LOCUS       DASVHM010000054         4403 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1013877, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000054 DASVHM010000000
VERSION     DASVHM010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4403
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1013877"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..348
                     /locus_tag="VF308_00995"
     CDS             <1..348
                     /locus_tag="VF308_00995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003459923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX7435258.1"
                     /translation="PVPEPRPKKDEHGNQVEQDKHQPKPDDSEALASWRRRMASPEAK
                     EIYKQRAATAECVNAQARNPGLLRMPVRGLAKVRSVVGLFVLAHNLMRMAVLAPRLIG
                     WRTSPSAMAAQAA"
     gene            660..1712
                     /locus_tag="VF308_01000"
     CDS             660..1712
                     /locus_tag="VF308_01000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019427355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HEX7435259.1"
                     /translation="MNFPAYTRGARLPEILKARIVVLDGAMGTMIQRHKLVEEDYRGE
                     RFKDHPKGLKGNFELLQFSRPDLIRGIHEAYLAAGADIVETNTFGATRVAQEDYGLAA
                     HAREMNVAAARLAREACDKFTSAEKPRFVAGVLGPTPRTASISPDVNDPAARNVTFDE
                     LRAAYREQAEGLLEGGCDLFLVETVFDTLNAKAAIFALDELMEDSGERLPVIISGTVT
                     DASGRILSGQTVSAFWHSVRHARPLAIGLNCALGAALMRPYIAELARVAGDTFVSCYP
                     NAGLPNPMSETGFDETPEITAGLLEEFARAGFLNIAGGCCGTTPEHIAQIAARVGRYA
                     PRCGRRGALFGELEAA"
     regulatory      1746..1857
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01057"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="S-adenosyl-L-homocysteine riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="S-adenosyl-L-homocysteine"
                     /db_xref="RFAM:RF01057"
     gene            1906..>4403
                     /gene="metH"
                     /locus_tag="VF308_01005"
     CDS             1906..>4403
                     /gene="metH"
                     /locus_tag="VF308_01005"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007860411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HEX7435260.1"
                     /translation="MAALPVPPLKLSGLEPVLIGADALFVNIGERTNVTGSKAFARLI
                     LNGKFEEALGVARQQVENGAQVIDINMDEAMLDSKAAMVRFLNLIAGEPEIARVPIMI
                     DSSKWEVIEAGLKCIQGKGIVNSISLKEGVDAFKRQARLVRRYGAAAVVMAFDEKGQA
                     DTCQRKIEICSRAYRILVNEVGFPPEDIIFDPNIFAIATGIEEHNNYAVDFIEATRWI
                     KANLPGAKVSGGVSNVSFSFRGNDPVREAIHTVFLYHAIRAGMDMGIVNAGMVGVYDD
                     LDPELRERVEDVVLNRRADAGERLVEIAENAKGQTKDESVRLAWRAKPVEERLSHALV
                     HGINDFIVDDTEQVWRAIEATGGRPLHVIEGPLMAGMNIVGDLFGQGKMFLPQVVKSA
                     RVMKQAVAHLLPYIEAEKKALVDGGGEAKAKGKIVIATVKGDVHDIGKNIVTVVLQCN
                     NFEVVNMGVMVACQDILARAKAEGADIIGLSGLITPSLEEMQHVAAEMQRDDHFRVRK
                     TPLLIGGATTSRVHTAVKIAPHYEGPVVYVPDASRSVSVCSELLSDDRAAAYIAELNA
                     DYVRVRELHANKKVAPLLTLVEARANKTPIEWSDTTTPAPKFIGRRVFRNQDLAEIAA
                     LIDWAPFFQTWDLAGPYPQILSDEVVGESARRVYGDAQRMLKRVIEGRWLSANGVIGL
                     YPANTVNDDDIEIYTDASRSEVLMTWRGLRMQSVRPVVDGVRRPNRCLADFIAPKASG
                     VADHIGLFAVTSGIGTEKKEAEFLADHDDYSAIMLKALADRLAEAFAERLHQRVRTEF
                     WGYAPDEVLSTAELIAERYRGIRPAPGYPACPDHT"
BASE COUNT          800 a         1497 c         1458 g          648 t
ORIGIN      
        1 ccggtacccg agccccggcc gaagaaggac gagcacggca accaggtcga gcaggacaag
       61 caccagccca agcctgatga ctctgaggcg ctggcgagtt ggcgccggcg catggccagt
      121 cccgaggcca aggagatcta caagcagcgc gcggcaacgg ccgaatgcgt caacgcacaa
      181 gcccgcaacc caggcctgtt gcgaatgccc gtgcgcggct tggccaaagt ccgctcggtg
      241 gtgggcctgt tcgtgctggc acataacctg atgcgaatgg ccgtgctcgc gccgcgactc
      301 atcggttggc ggacaagtcc gtccgcaatg gccgcgcagg ccgcctgaga gggcaagaca
      361 tgaccgaaaa cgccaaaaat ggccctgcca gaaaggcctc agcgccgatc acccgcatta
      421 ccggtccggc atgtccgcac gccgaccaag ttaccccgcg cgtcgactcg tacgatgcct
      481 acgccggtgg ccgaaaaact ctcgggctct gaggccggac gcaaaggcgt gcctgcgcac
      541 ggtttcgcgc ctgccgaagg acgccgcgcc tgcaagcgcg gcggcatgag gcgtggacgc
      601 aagggctcgc ctgcgcgcgg ccctgaacgg cttctcgaca tgtttcctac aatgcatgaa
      661 tgaacttccc ggcctacacg cggggcgcgc gcctgcccga gatcctcaag gcgcgcatcg
      721 tcgtactcga cggtgcgatg ggcacgatga tccagcgcca taagctggtc gaggaagact
      781 accgcggcga gcgattcaag gatcatccga agggcttgaa gggcaacttc gagttgctgc
      841 aattcagccg ccccgatctg atccgcggca tccatgaagc ctatctggcc gcgggcgccg
      901 acatcgtcga gaccaatacg ttcggcgcca cccgggtcgc gcaggaagac tacggcctgg
      961 ccgcgcatgc gcgcgaaatg aacgtcgccg cggcccgcct cgcacgcgag gcttgcgaca
     1021 agttcacgag tgccgaaaaa ccccgcttcg tggccggcgt gctcgggccg acgccgcgca
     1081 cggcgagcat cagccccgac gtcaacgatc cggcggcgcg caacgtgacg ttcgacgagc
     1141 tcagggccgc gtatcgggag caggccgagg gactgctcga gggcggctgc gacctgttcc
     1201 tggtcgagac cgtgttcgac acgctcaatg cgaaggccgc gatctttgcc ctcgacgagt
     1261 tgatggaaga cagcggcgag cgcctgccgg tgatcatttc cggcacggtg accgatgcct
     1321 cggggcgcat tctttccggg cagaccgtca gcgccttctg gcacagcgtg cgccatgcgc
     1381 ggccgctcgc gatcggcctc aattgcgcgc tcggcgcggc gctgatgcgg ccctacatcg
     1441 ccgagctggc gcgcgtggcc ggcgacacct tcgtgagctg ctatccgaac gcgggcctgc
     1501 ccaacccgat gagcgagacc ggcttcgacg agacgcccga aatcaccgcc gggctgctcg
     1561 aggaattcgc gcgcgcgggt ttcctgaaca tcgccggggg gtgctgcggc acgacgcccg
     1621 agcacatcgc gcagatcgcc gcacgggtcg gccgttacgc gccgcgctgc ggccgtcgcg
     1681 gcgcgctctt cggcgagctc gaagcggcct gacatccacg ctgccgcgcg accgtacaat
     1741 tcggtctgcc caaggagcgt tgcgacagcc ccggacgaga gtgtccgaac cggctgccag
     1801 gcttgggcac ggcgccatcc ccggtgatcg cgccgccggc aacggcgctc acccgaccat
     1861 gaactgggcc gcggtgggtt gcacggcccg cacttcgatc gcgcgatggc tgcccttccc
     1921 gttccacccc tgaagctttc cggcctcgag ccggtcctga tcggcgccga tgcgctcttc
     1981 gtcaacatcg gcgagcgcac caatgtcacg ggttcgaagg ccttcgcgcg cctgatcctg
     2041 aacggcaagt tcgaggaagc gctcggcgtc gcgcgccagc aggtcgagaa cggcgcgcag
     2101 gtgatcgaca tcaacatgga cgaggccatg ctcgacagca aggccgcgat ggtgcgcttc
     2161 ctgaacctga tcgccggcga gcccgagatc gcgcgcgtgc cgatcatgat cgacagctcg
     2221 aagtgggagg taatcgaggc cgggctcaag tgcatccagg gcaagggcat cgtcaactcg
     2281 atctcgctga aggagggcgt cgacgcgttc aagcgccaag cccggctcgt gcgtcgctac
     2341 ggcgccgccg cggtcgtgat ggcgttcgac gaaaagggcc aggccgacac ctgccagcgc
     2401 aagatcgaga tctgctcacg cgcctaccgc atcctggtca atgaggtcgg ctttccgccc
     2461 gaagacatca tcttcgatcc gaacatcttc gcgatcgcga caggcatcga ggagcacaac
     2521 aactacgcgg tcgatttcat cgaggcgacg cgctggatca aggcgaacct gcccggcgcg
     2581 aaggtgagcg gcggcgtcag caacgtgagc ttctcgtttc gcggcaacga cccggtgcgc
     2641 gaagcgatcc acaccgtgtt cctgtaccac gcgatcaggg ccggcatgga catgggcatc
     2701 gttaacgccg gcatggtcgg cgtctacgac gacctcgacc ccgagctgcg cgagcgggtc
     2761 gaggacgtcg tgctgaaccg ccgcgccgat gccggcgagc gcctggtcga gatcgccgag
     2821 aacgccaagg gtcagaccaa ggacgagagt gttcgcctcg cctggcgcgc caagccggtc
     2881 gaggagcggc tgagccatgc gctggtgcac ggcatcaacg acttcatcgt cgacgacacc
     2941 gagcaggtct ggcgcgccat cgaggccacc ggcgggcgtc cgctgcacgt gatcgaaggg
     3001 ccgctgatgg ccggcatgaa catcgtcggc gacctcttcg gccagggcaa gatgttcctc
     3061 ccgcaggtgg tgaagtcggc ccgcgtgatg aagcaggccg tcgcgcattt gctgccctac
     3121 atcgaggccg agaagaaggc actcgtcgat ggcggcggcg aagccaaggc gaagggcaag
     3181 atcgtgatcg cgaccgtgaa gggcgatgtg cacgacatcg gcaagaacat cgtcacggtc
     3241 gtgctccagt gcaacaactt cgaagtcgtc aacatggggg tgatggtcgc gtgccaggac
     3301 atcctcgcca gggcgaaggc ggagggcgcc gacatcatcg gcctgtcggg cctcatcacg
     3361 ccgagcctcg aggagatgca gcacgtcgcc gcggagatgc agcgcgacga ccactttcgg
     3421 gtgcgcaaga ccccgctgct gatcggcggg gcgacgacga gccgcgtcca caccgccgtg
     3481 aagatcgcgc cgcactacga gggcccggtg gtttacgtgc ccgatgcgag ccgctcggtc
     3541 agcgtctgca gcgagctcct gagcgacgac cgcgccgccg cctacatcgc cgagctcaac
     3601 gcagactatg ttcgcgtgcg cgagctgcac gccaacaaga aggtggcacc gctcctcacg
     3661 ctggtcgagg cgcgcgccaa caagaccccg atcgaatggt ccgacaccac gacgccggcg
     3721 ccgaagttca tcggccgccg ggtctttcgc aaccaggatc tggccgagat cgcagccctc
     3781 atcgactggg cccctttctt ccagacctgg gacctggccg ggccctatcc gcagatcctc
     3841 agcgacgagg tcgtcggcga gtcggcgcgc cgcgtctacg gcgatgcgca gcgcatgctc
     3901 aagcgcgtga tcgagggccg ctggctgagc gccaatggcg tcatcggcct ctatccggcg
     3961 aacacggtga acgatgacga catcgagatc tacaccgacg cgtcgcgatc cgaagtgctg
     4021 atgacctggc gtggcttgcg catgcagtcc gtgcggccgg tggtcgacgg cgtccggcgc
     4081 ccgaaccgct gcctcgccga cttcatcgca ccgaaggcat cgggcgtcgc cgatcacatc
     4141 gggcttttcg ccgtgaccag cggcatcggc acggagaaga aggaggcaga gttcctcgcc
     4201 gaccacgacg actacagcgc gatcatgctg aaggccctcg ccgatcgcct cgccgaggcc
     4261 ttcgcggagc gcctgcacca gcgcgtgcga accgagttct ggggctatgc gcccgacgag
     4321 gtgctcagca ccgccgagct gatcgccgaa cgctaccgcg gcatccgccc cgcgcccggc
     4381 tacccggcct gcccggatca cac
//
LOCUS       DASVHM010000055         1936 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1157459, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000055 DASVHM010000000
VERSION     DASVHM010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1157459"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..403
                     /locus_tag="VF308_01010"
     CDS             <1..403
                     /locus_tag="VF308_01010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HEX7435261.1"
                     /translation="GVTYCIEPLGRGETALINTLAEAAELVEAIDHPNLRTMIDCSAA
                     GSTEAVSVPELIDQWLPTGLVAHIQFNDPNRRAPGQGEMRFGPILTALDRNDYRGVVS
                     IEPFDYVPDGPGSAAFAIAYLRGVREALYAR"
     gene            418..1569
                     /locus_tag="VF308_01015"
     CDS             418..1569
                     /locus_tag="VF308_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX7435262.1"
                     /translation="MATRTLGLVMHGVTGRMGMNQHLIRSIVAIRQQGGVALSNGDRV
                     MPDPILIGRNAEKIESLAKAHGIARWGTNLDAALANPADSIFFDAGTTQMRPTLLARA
                     IRAGKHVYCEKPIATNLNEALEVCRLAQSSGLKHGAVQDKLFLPGLRKLDMLRRAGFF
                     GRILSVRIEFGYWVFEGDLQPIQRPSWNYRSEDGGGIILDMVCHWRYVLDNLFGAVQS
                     VSCLGTTHIPTRWDESGKPYPATADDAAYATFQLEGGVVAQVNSSWTTRVRRDDLVTF
                     HVDGTNGSAVAGLTDCRTQSRVNTPRPIWNPDAKQTMPFFEQWQEVPDTQVYDNGFKV
                     QWEHFIRHVVEDEPYRYTLPEGAKGVQLVEAALQSSRERRWVDVPTLKI"
     gene            1591..1803
                     /locus_tag="VF308_01020"
                     /pseudo
     CDS             1591..1803
                     /locus_tag="VF308_01020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746994.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF993 family protein"
     gene            1793..1936
                     /locus_tag="VF308_01025"
                     /pseudo
     CDS             1793..1936
                     /locus_tag="VF308_01025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746995.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gfo/Idh/MocA family oxidoreductase"
BASE COUNT          332 a          684 c          637 g          283 t
ORIGIN      
        1 cggtgtgacc tactgcatcg agcccttggg ccgcggcgaa acggcgctga tcaacacgct
       61 ggccgaggcc gccgagctgg tcgaggcgat cgaccatccg aacctgcgca cgatgatcga
      121 ttgcagcgcc gccggctcga ccgaagcggt gtcggtgccg gagctgatcg accagtggct
      181 gccgaccggc ctggtcgccc acattcagtt caacgacccg aaccggcgcg cgccgggcca
      241 gggcgagatg cgcttcggac cgatcctcac cgcgctcgat cgcaatgact accgaggcgt
      301 cgtcagcatc gaaccgttcg actacgtgcc ggacgggccg gggtcggcgg ccttcgcgat
      361 cgcctacctg cgcggcgtgc gcgaagcgct ctacgcgcgc tgaaggaaag acccacgatg
      421 gcaacccgaa cactcggctt ggtcatgcac ggcgtcaccg ggcgcatggg catgaaccag
      481 cacctgatcc gctcgatcgt cgcgatccgc cagcaaggcg gcgtggcgct ttcgaacggc
      541 gaccgcgtga tgcccgaccc gatcctgatc gggcgcaacg ccgagaagat cgagagcctc
      601 gcgaaggcgc acggcatcgc gcgctggggt acgaaccttg acgcggcgct cgccaatccg
      661 gccgattcga tcttcttcga cgccggcacg acgcagatgc gaccgacgct gctggcccgg
      721 gcgatccgcg ccggcaagca cgtctactgt gaaaagccga tcgcgaccaa cctcaacgag
      781 gcgctcgaag tgtgccggct cgcgcagagc tccggcctca agcacggcgc agtgcaggac
      841 aagctcttcc ttccgggcct gcgcaagctc gacatgctgc gccgcgccgg cttcttcggc
      901 aggatcctgt cggtgcggat cgagttcggc tactgggtct tcgaaggcga cctgcagccg
      961 atccagcgtc cctcgtggaa ctaccgcagc gaagacggcg ggggcatcat cctcgacatg
     1021 gtctgccact ggcgctacgt gctcgacaac ctgttcggcg cggttcagtc ggtgtcgtgc
     1081 ctcggcacga cccatatccc gacgcgctgg gacgagagcg gcaagccgta tcccgcgacc
     1141 gcggacgacg cggcctacgc gaccttccag ctcgaaggcg gcgtggtcgc gcaggtcaac
     1201 agctcctgga cgacccgggt ccggcgcgac gacctcgtca ccttccacgt cgacggcacg
     1261 aacggctcgg cggtggccgg actcaccgac tgccgcacgc agtcgcgcgt caacacgccg
     1321 cgcccgatct ggaatccgga tgcgaagcag acgatgccgt tcttcgagca atggcaggaa
     1381 gtgcccgaca cgcaggtcta cgacaacggc ttcaaggtgc aatgggagca cttcatccgc
     1441 cacgtggtcg aggacgagcc gtaccgctac acgctgcccg aaggggcgaa aggcgtgcag
     1501 ctggtcgaag cggcattgca gtcgtcgcgc gaacggcgtt gggtcgatgt gccgacgctg
     1561 aagatctgaa tcgccgcaca gggccgagtc atgaacctca cgattcccct gccgcaacgc
     1621 gatggttcga tcgtggacta cacgtcgagc ggccggccac cctgggccgc gcccgcgcgg
     1681 ccggccttca atcgcatcgc ctactcggcc gcgcacgtcg tcgccgaccc gctcgccgcc
     1741 gccgacccct ggctcgatgc cgccattgac tgggacgcga cgatcgccta tcgacgccgc
     1801 ctacgcgacc tgcgagctcg agggccacca gggcgagcgc gtcgtcgcgc agctgacgat
     1861 gtcgtgggcg acgcgggtgc ggcgcgacga cctcgtcacc ttcagcgtcg acggcaccga
     1921 cggctcggcc gtcgcc
//
LOCUS       DASVHM010000056         5533 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_581002, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000056 DASVHM010000000
VERSION     DASVHM010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5533
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_581002"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(357..1205)
                     /locus_tag="VF308_01030"
     CDS             complement(357..1205)
                     /locus_tag="VF308_01030"
                     /inference="COORDINATES: protein motif:HMM:NF022694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3047 domain-containing protein"
                     /protein_id="HEX7435263.1"
                     /translation="MPPTEDHASFPARPQPLSDTQSLVHREVGARLGRRRFVLLGAAV
                     VGLAGCRTVRVPPPERGCNVLARFSTQQNLGGVPTCWRPQVMRHDLPTTRYEVAERDG
                     RTVLHSVSDGATSGLRCDVDIDPNDTPWLHWAWRVDSVDLRATVAFDELDDSPTRVIV
                     AFDGDNSLLKPRDRLFHEMVETVTGYAAPFATLMYVWDGRAPTESIFQYLRTSRIRYL
                     VVESGAANTGRWLDYSRNVVEDYRRVFGAEPGRIRAVAVLTDSDDLKTHSEAWYGDVA
                     FSRAQG"
     gene            complement(1380..1593)
                     /locus_tag="VF308_01035"
                     /pseudo
     CDS             complement(1380..1593)
                     /locus_tag="VF308_01035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020204390.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminobenzoate-CoA ligase"
     gene            complement(1615..3240)
                     /locus_tag="VF308_01040"
     CDS             complement(1615..3240)
                     /locus_tag="VF308_01040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435264.1"
                     /translation="MKIGFPLAALVIAVAAHGPACAQAAAEHDHQAHVHGQDGKPPEQ
                     LGRVSFDNSCGAAVQPQLERAVALLHSFWFREADKAFRQVLEGDPGCAIATWGIATVL
                     IGNTFATGPTPAQAQQAKDAIERGRAIGAKTERERLFIEAVAAYYALYPDRPHRARMQ
                     ALSTAFESLAARFPADDETQIFSALYLASTQDPSEQTFAATLKAAAILEDQYRKHLDH
                     PGVAHYLIHSYDYPPIADKGLAAARRYAAIAPSAPHALHMPSHIFTRVGAWADSAESN
                     LHSANVAKAEKEFNNQLHAMDYMVYAYLQMGRDADARRLVDEAPGVRGDDQILSTPYA
                     LSAIPARYAVERGAWSEAARLQPQTTRFALTTAITHFARALGAARSGDAAAADADVEQ
                     LARIADALKATKDNYWATEVEVQRLGAAAWVDYAKGNRPVALELMQAAAALEDKSEKA
                     AVSPGRLVPAHELLGDMLMESGRPADALAEYERVQVRDPNRFRSLYGAGLAASAAGQR
                     DKARLYWSRLSEMAGTGELRPETRKAREWLAKG"
     gene            complement(3323..4963)
                     /locus_tag="VF308_01045"
     CDS             complement(3323..4963)
                     /locus_tag="VF308_01045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009240250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7435265.1"
                     /translation="MPTTAHVDTFARDHLPASGAQPEFRFDLPELQFPERLNCATELL
                     DRHVKEGRGDRRCVSAPGGPSWSYAELQQQADRIAHVLVAECGLVPGNRVLLRAANKP
                     MLVACWFAVMKAGGIAVATMPQLRAKELAQIIGKARTTIALCDAALRAELDAAAATRA
                     PSAPGLARIVCFGDASAADGLEARMALHDASFTNVDTAADDTCLFAFTSGTTGQPKAT
                     MHFHRDVMASCVCFPKHVLRAAPDDVFIGSPPLAFTFGLGGLTVFPMHIGASTVLLEK
                     AGPPDLLEAIVTQRATVLVTAPTSYRAMAAAAREKKIGTRDGGSLRKCVAAGEWLPAA
                     TRTLWREATGIEIIDGIGATEMFHIFIAADEAHARPGATGLAVPGYRARVVDDEGNEV
                     PAGTIGRLAVQGPTGCRYLSDPRQADYVKDGWNYTGDAYLQDADGYFFYQSRTDDMII
                     SAGYNIAAVEVEDVLLRHEAVAECAVIGAPDEERGQIVKAFVVLRESHRGDEAMVKAL
                     QDFVKATVAPYKYPRAVEFRESLPRTETGKLQRFRLRT"
     gene            complement(4996..>5533)
                     /locus_tag="VF308_01050"
     CDS             complement(4996..>5533)
                     /locus_tag="VF308_01050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7435266.1"
                     /translation="RASITGEVVMDEVFCPEENAFPEVRGLKGPFTCLNSARYGIAWG
                     ALGAAEDCFHRARQYTLDRKQFGKPLAANQLVQKKLADMLTEIAIGLQGCLRLGRMKD
                     EGTASTDLTSIMKRNSCGKALDIARAARDMLGGNGISDEFGVARHLVNLEVVNTYEGT
                     HDVHALILGRAITGIAAF"
BASE COUNT          813 a         1894 c         1929 g          897 t
ORIGIN      
        1 actgtttcgc tggcgatgac ggtgttcgcg caaaccaact cgatagggac ttcgcggccg
       61 ggcaactggc cgtcgatggt cagcgagccg tagaaggccg cagcggaagc gccgaaaggc
      121 gcgacaagga tgatcaaggc cgccaccgtt cgcttcatcg ccgctcccga gctaggtaga
      181 cggtagtctg aactatcacc cgtctcacac gcaacgccta ttgcacgccg gttcgcgcgt
      241 ttcaccagcc ctgcgctcgg agcgaaaagg acctaccccc gcaaccgaaa tctttgcaac
      301 ttccccgtct cagtcctcgg cagcgcctcc cgaaactcca ccgcccgcgg ataccttcag
      361 ccctgcgcgc ggctgaacgc cacgtcgccg taccaggctt cggagtgcgt cttgaggtcg
      421 tcgctgtcag tcaggacggc cacggcgcga atgcggcccg gctcggcacc gaagactcgc
      481 cggtagtctt cgaccacgtt gcgcgaatag tcgagccacc gcccggtgtt ggccgcaccg
      541 ctttcgacca ccaggtagcg gatgcgactc gtgcggaggt actggaagat gctctcggtc
      601 ggcgccctgc cgtcccacac gtacatcagg gtcgcaaacg gcgcggcgta tcccgtgacc
      661 gtctccacca tctcatggaa caggcgatcg cggggcttca gaagggagtt gtcgccgtcg
      721 aaggccacga tcacgcgcgt cggggagtcg tcgagttcgt cgaaggccac ggtcgctcga
      781 agatcgacgc tgtcgactcg ccaggcccaa tgcagccacg gcgtgtcgtt ggggtcgatg
      841 tcgacatcgc agcgcaggcc cgacgtcgcg ccgtcggaga ccgaatgcag caccgtccgg
      901 ccgtcgcgct cggccacttc gtagcgggtg gtgggcaggt cgtgccgcat gacctgcggt
      961 cgccagcacg tgggcacgcc gccgaggttc tgctgggtag agaaccgggc gagaacgttg
     1021 cagccgcgct ccggcggagg tacgcgtacc gtgcggcaac ccgccaggcc aacgaccgcg
     1081 gcgcccagga ggacgaagcg acgccgcccg aggcgggcac cgacttcacg gtggaccaga
     1141 gattgcgtat ccgacaatgg ctgcgggcga gcggggaagc ttgcgtgatc ctcggtcggc
     1201 ggcatgtgcg ccgagaacct cggaacctag ctcctgcagg acccccttct tcttgccatc
     1261 ttcatcgcgt ccgggcttgg tcggttgatc tgactcaatc gaccgtcgtg acgactcccg
     1321 caccacaagg taccagcagc gtcgcggaag gcgtccatgc gggattttcg aggcgaccac
     1381 tacccccgca accgaaacct ctgcaacttc cccgtctccg tcctcggcaa ggcctcccga
     1441 aactccgctg cccgcggata cttgtacggt gccactgacg gcgcattcgg cgacggcctc
     1501 atgccgcagc agcacgtcct ccaccgtcgc gatgttgtag ccggccgaga tgatcatgtc
     1561 gtcggtgcgc gactggtaga agaagtagcc ctcggcgtgg tgccggcggg tacgtcaacc
     1621 cttcgccagc cactcccgcg ccttccgggt ctcgggccga agctcgcccg tgccggccat
     1681 ctccgagagc ctcgaccagt acagacgggc cttgtcgcgc tggcccgcgg cggaagcggc
     1741 gaggccggcg ccgtacaggc tgcgaaaccg gttcgggtcg cgcacctgga cgcgttcgta
     1801 ctccgccagc gcgtcggccg gtctgccgct ttccatgagc atgtcgccga gcagctcgtg
     1861 cgccggcacc aggcggccgg ggctcaccgc cgccttctcg ctcttgtcct cgagcgcggc
     1921 cgcggcctgc atgagctcca gagccaccgg gcggttgccc ttcgcgtagt ccacccatgc
     1981 cgccgcgccc aggcgctgca cctccacttc ggtcgcccag tagttgtcct tggtggcctt
     2041 cagcgcatcg gcgatgcggg cgagctgctc gacatcggca tcggccgcgg cggcatcgcc
     2101 gctccgggcc gcacccaggg cgcgcgcgaa atgggtgatg gccgtcgtca gtgcgaagcg
     2161 cgtcgtctgc ggctgcagcc gcgccgcttc gctccaggcg ccacgctcga ccgcataccg
     2221 cgccgggatc gccgaaagcg cgtacggcgt gctcaggatc tggtcgtcgc cgcgcacgcc
     2281 gggcgcctcg tcgacgaggc gccgcgcgtc ggcatcgcgc cccatctgca ggtaggcgta
     2341 gaccatgtag tccatggcgt gcagctggtt gttgaactcc ttctcggcct tggcgacgtt
     2401 ggccgaatgg aggttgctct cggccgaatc cgcccacgcg ccgacccgcg tgaatatgtg
     2461 cgagggcatg tgcagggcgt gcggcgcgga aggcgcgatg gcggcgtagc ggcgggccgc
     2521 ggccagcccc ttgtcggcga tcggcgggta gtcgtagctg tggatcagat agtgggccac
     2581 gccgggatgg tcgaggtgct tgcggtactg atcttcgagg atggccgcgg ctttcagcgt
     2641 ggccgcgaac gtctgctcgc tcgggtcctg cgtcgaggcg aggtagagcg ccgagaagat
     2701 ctgcgtctcg tcgtcggccg gaaaacgcgc cgcgaggctc tcgaacgccg tggacagggc
     2761 ctgcatgcgg gcgcggtgtg gccggtcggg gtagagcgcg tagtacgcgg ccaccgcttc
     2821 gatgaagagg cgttcgcgct cggtcttcgc gccgatcgcc cggccgcgtt cgatggcgtc
     2881 cttggcctgc tgcgcctggg ccggcgtggg gcccgtggcg aaggtgttgc cgatcaggac
     2941 ggtggcgatg ccccaggtgg cgatggcgca cccgggatcg ccttcgagca cttggcgaaa
     3001 cgccttgtcc gcctcgcgga accagaatga atgcaacaac gccacggcgc gctccaactg
     3061 cggctgcacc gccgcgccgc aggagttgtc gaagctcacc cggccgagct gctcgggtgg
     3121 cttgccgtcc tggccatgga cgtgcgcctg atggtcgtgt tcggccgctg cttgagcgca
     3181 ggccggcccg tgggcggcca ccgcgatgac gagagccgcc agaggaaaac cgatcttcat
     3241 gagcactcct cgcttcatgc cgatgcatcg atcggcgtac cgacgatcca aactccaggg
     3301 tcgagacagg ccgatcgctc acctaagtac gtaagcggaa tctctgcagc tttcccgtct
     3361 ccgttcgcgg taaagattcg cgaaactcca ccgcccgcgg atacttgtac ggcgccaccg
     3421 tcgccttcac gaaatcctgc agcgccttca ccatcgcctc gtcgccgcga tgcgactcgc
     3481 gcagcacgac gaacgccttg acgatctgcc cgcgctcctc gtccggcgcg ccgatgaccg
     3541 cgcactcggc gacggcctcg tgccgcagca gcacgtcttc cacctccacc gcggcgatgt
     3601 tgtagccggc cgagatgatc atgtcgtcgg tgcgcgactg gtagaagaag tagccgtcgg
     3661 cgtcctgcag gtaggcgtct ccggtgtagt tccagccgtc cttcacgtag tcggcctggc
     3721 gcgggtcgct caggtagcgg cagcccgtgg ggccctgcac cgcgaggcgc ccgatcgtgc
     3781 cggcgggcac ttcgttgccc tcgtcgtcga cgacgcgcgc ccggtagccg ggcacggcga
     3841 ggccggtggc gccgggccgc gcgtgcgcct cgtcggcggc gatgaagatg tggaacatct
     3901 cggtcgcgcc gatgccgtcg atgatctcga tgccggtggc ctcgcgccag agcgtgcgcg
     3961 tggcggccgg gagccactcg ccggcggcga cgcacttgcg cagcgacccg ccgtcgcgcg
     4021 tgccgatctt cttctcgcgc gcagcggcgg ccatcgcgcg gtacgaggtc ggcgccgtga
     4081 cgagcacggt cgcgcgctgg gtgacgatcg cttcgagcag gtcgggcggg ccggccttct
     4141 cgagcagcac cgtcgaagcg ccgatgtgca tcgggaacac cgtcaggccg ccgagcccga
     4201 aggtgaacgc gagcggcggg ctgccgatga agacgtcgtc gggcgcggcg cgaagcacgt
     4261 gcttcgggaa gcacacgcag ctcgccatca cgtcgcggtg gaagtgcatc gtcgccttcg
     4321 gctggccggt ggttcccgac gtgaaggcga aaaggcacgt gtcgtcggcg gcggtgtcga
     4381 cgttggtgaa cgacgcgtcg tggagcgcca tgcgcgcctc caggccgtcg gccgccgagg
     4441 cgtcgccgaa gcagacgatt cgcgcgagcc ccggcgccga cggcgccctc gtggccgcgg
     4501 ccgcgtcgag ctcggcgcgc agcgccgcgt cgcagagggc gatcgtcgtc cgcgccttgc
     4561 cgatgatctg cgccagctcc ttggcgcgca gctgcggcat cgtcgcgacg gctatgccgc
     4621 ccgccttcat caccgcgaac cagcaggcga cgagcatcgg cttgttggcg gcgcgcagca
     4681 gcacgcggtt gccgggaacg aggccgcact cggcgacgag gacgtgggcg atgcggtcgg
     4741 cctgctgctg cagctcggcg tagctccacg acgggccgcc gggcgcgctg acgcagcgcc
     4801 ggtcgccgcg gccttccttc acgtggcggt cgagcagctc ggtggcgcag ttcaggcgct
     4861 cggggaactg cagctcgggc aggtcgaagc ggaactcggg ctgcgccccg gacgcaggca
     4921 ggtgatcgcg cgcgaaggtg tcgacgtggg cggtggtcgg catgtcgctc gcgtgccggc
     4981 gatgcgtgct cgctctcaga acgcggcgat cccggtaatc gcgcggccga ggatcagcgc
     5041 gtgcacgtcg tgcgtgccct cgtaggtgtt gacgacctcg aggttgacga gatggcgggc
     5101 gacgccgaac tcgtcgctga tgccgttgcc gccgagcatg tcgcgcgccg cgcgggcgat
     5161 gtcgagcgcc ttgccgcacg agttgcgctt catgatcgac gtcaggtcgg tcgacgccgt
     5221 gccttcgtcc ttcatgcggc cgaggcgcag gcacccctgc aggccgatcg cgatctcggt
     5281 cagcatgtcg gcgagcttct tctgcaccag ctggttggcg gcgaggggct tgccgaactg
     5341 cttgcggtcg agcgtgtact ggcgggcgcg atggaagcag tcttctgccg caccgagcgc
     5401 gccccaggcg atgccgtagc gcgccgagtt gaggcaggtg aacgggcctt tcaggccgcg
     5461 cacctcgggg aaggcgttct cttccgggca gaacacctcg tccatgacga cctcgccggt
     5521 gatcgacgcg cgc
//
LOCUS       DASVHM010000057         4668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_436557, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000057 DASVHM010000000
VERSION     DASVHM010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4668
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436557"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1075
                     /locus_tag="VF308_01055"
     CDS             <1..1075
                     /locus_tag="VF308_01055"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7435267.1"
                     /translation="ERLDREATFPYELYRQLGDLGIPALPFAEEYGGMGLGTFDMALA
                     IEQIAKRDQTLAVTMMVSVSAGLIIQRFGTAEQKARYLPDIVKGRALGALAGTEPDAG
                     SDTAGFKTRGVRKGDDWVINGSKAYITNAGTDISTVALTLAATTPPEAEKKEFSLFAV
                     ARGTPGYEQGEPYRKMGWRSGDTRPLYFQDCAVPHSAMMGGEGQGRLLLHRGYQQARV
                     FLSACSLGLADGALDLSVKYANERQAFGKTIGGHQLVQEMCAQMAVKVEAARLLTYRA
                     AWLADKGAASVKDLAFAKYFACEIGTEVANMAVQIHGGWGFMDDCAVSRYLRDNRICT
                     IGDGSSQIQLQLIARGLGLDVQF"
     gene            1084..1668
                     /locus_tag="VF308_01060"
     CDS             1084..1668
                     /locus_tag="VF308_01060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435268.1"
                     /translation="MSFGNALRNLVGEHAGRVPEIAARLARAGIDTSALPDDAALAML
                     PLLHKSALRELQSAAPPWGGMLADGFTPTALFMSSGGVVEPLVPRMVERLAELLRTAG
                     FGPSHTVLNGFNYHVTPAGLLFHEALVRAGCTVLPARPQNTATVVDYAQALGANAFVG
                     IASHLKILFEQQPALAGRRQLHHRRPPQVVTRHA"
     gene            1727..2482
                     /locus_tag="VF308_01065"
     CDS             1727..2482
                     /locus_tag="VF308_01065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013544058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435269.1"
                     /translation="MLEALDLHLSFGSIKALVGVDFYVSAGELVSIIGPNGAGKSSLL
                     NCLSGFYKPSTGSIRFEGAEIGHIAPPRRAAMGIARTFQGIQTYESMTVRENILCGCH
                     CRMRTGLIAGALWWGPGRREMVRFIDEAETIIEFLELEELRHARVGDLGYGLRKRVDL
                     GRALAIDPKVLILDEPMAGMNADEKADLARYILDINEARDVPVVLVEHDMEVVMDISD
                     RVMVLEWGRTIADGTPAEVRADQKVIQAYLGQE"
     gene            2482..4401
                     /locus_tag="VF308_01070"
     CDS             2482..4401
                     /locus_tag="VF308_01070"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7435270.1"
                     /translation="MDLQGSYGDDAREPNGETLPRLLRRRAAEHGTRDFLRAKRHGVW
                     AATSWSATLGRVEALARAMIARGVKRGDVIAVIGENVPEAYLVQYAALCAGAAATHLY
                     PDASAAELGFVLKNSGAALLFAEDQEQVDKFLQSGDAQAAVLGVVYLDERGLWDYTNP
                     RLLSFDRFVASAPGDAAARAELDARIAAGTDADLAALCYTSGTTGSPKGVRLTHRHLL
                     DNAYRLIASFGIAPHIDYFSYISPAWAAEQFTGVGLSLLAPAVVHFAEKPETVPTDMR
                     EISPEFLLFTPRQWEMIASQVEAQMLDAKPMRRRLYQWAITAPPRMRWLADALVLRAI
                     RDNTGLARAKFPISAGSGLSAEIFRRFHALGIPLRNLYGSTEAGLVSAHWGAEAEPST
                     LGRPLKIARSVGTPLELRIAADGELLVRGGAGFAGYHGDAEATRKVLDAEGWFHTGDA
                     MHVSESGELVFLDRVKDMRWLSTGSRFPPQTIENHLRASPFLRDAIVLGDETRGFIAA
                     LINVDSGIFGRYLESRNIGWGTFAELSQLDAVLERVGLEVERVNAMLPASSRIGRFAT
                     LPKELDADDAELTRSRKLKRDVIANRYAALIESVYAGDESCQLTVSVIYQDGTVGTVH
                     AGVRILSTDAASVAA"
     gene            4406..>4668
                     /locus_tag="VF308_01075"
     CDS             4406..>4668
                     /locus_tag="VF308_01075"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435271.1"
                     /translation="MDLLQITIEGILTGLVYGLVALAFVVIFRASRIVNLAQGQLVLV
                     GAYVMGSLLTSLPLPAAIVLALGASLLIGVAIERFVFRPLIGQP"
BASE COUNT          729 a         1597 c         1549 g          793 t
ORIGIN      
        1 cgagcggctc gaccgcgaag ctacgttccc gtacgagctg taccgccagc tcggcgatct
       61 cggcatcccg gcattgccgt ttgccgagga atacggcggc atgggcctgg gcaccttcga
      121 catggccctt gcgatcgagc agatcgccaa gcgagaccag acgctggccg tgacgatgat
      181 ggtcagcgtt tcggccggcc tgatcatcca gcgcttcggc accgccgagc aaaaggcgcg
      241 atatcttccc gacatcgtca aggggcgtgc gctcggcgcg ctggccggca ccgagccgga
      301 cgctggctcc gacacggcgg gcttcaagac ccgcggcgtg cgaaaggggg acgactgggt
      361 catcaacggc agcaaggctt acatcaccaa cgccggtacc gacatctcca ccgtcgcgct
      421 cacgctggcc gcgaccacgc cgcccgaggc ggagaaaaag gagttctcgc tgttcgcggt
      481 ggcgcgcggc acgcccggat acgagcaagg cgagccttac cgcaagatgg gttggcgttc
      541 gggcgacacc cgcccgctct acttccagga ctgcgcggtg ccgcacagcg cgatgatggg
      601 cggcgagggc caggggcgtt tgctgctgca ccgcggctac cagcaggcac gcgtgttcct
      661 gtcggcctgc tcgctcggcc tcgcagatgg cgcgctcgat ctctcggtca agtacgcgaa
      721 cgagcgccaa gccttcggca agaccatcgg cggccaccag ttggttcagg agatgtgcgc
      781 gcagatggcg gtcaaggtcg aggctgcgcg cctgctgaca taccgtgccg cctggctcgc
      841 cgacaaaggc gccgcttcgg tgaaggacct ggcgttcgcc aagtacttcg cctgcgagat
      901 cggcacggag gtcgccaaca tggccgtgca gatccacggt ggctggggct tcatggacga
      961 ctgcgcggtc tcgcgctacc tgcgcgacaa ccgcatctgc acgatcggcg acggcagcag
     1021 ccagattcag ctgcagctga tcgcgcgcgg cctcgggctc gacgttcaat tctgaagccg
     1081 ggcatgtcct tcggcaacgc gctgcgtaac ctcgtcggcg agcatgccgg ccgtgtaccc
     1141 gagatcgcgg cgcggctcgc gcgcgccggt atcgacacca gcgccttgcc cgatgacgcc
     1201 gcgctcgcca tgctgcccct gctgcacaag tcggcgctgc gcgaattgca atcggcagcg
     1261 ccaccctggg gcggcatgct cgccgacggc ttcacaccca cggcattgtt catgtcgtcc
     1321 ggcggcgttg tcgagccgct ggtgcctcgc atggtcgagc ggctcgccga gttgctgcgt
     1381 acggccggtt tcgggccctc gcacacggtg ctgaacggct tcaactatca cgtcacgccg
     1441 gccgggctcc tttttcacga ggccctcgtg cgtgccggat gcacggttct gccggcccga
     1501 ccgcagaaca ccgccacggt ggtcgactat gcgcaggcgc tcggcgccaa cgccttcgtc
     1561 ggcatcgcga gccacttgaa gatcttgttc gagcagcaac cagcgctcgc gggccgccga
     1621 cagctgcatc atcgacgacc tccgcaagtc gtgacacgcc atgcctgagc cgcacgtttc
     1681 caccgatgcc gtcaggtcgc ccccggttcg acccgtgccg acacgcgtgc ttgaagcgct
     1741 cgacctgcac ctgtcgttcg gctcgatcaa ggcgctcgtc ggcgtagact tttacgtctc
     1801 ggccggcgag ctggtctcga tcatcggccc caacggcgcc ggcaagagca gcctcttgaa
     1861 ctgcctgtcg ggtttctaca agccgagcac cggcagcatc cgtttcgaag gggccgagat
     1921 cggccacatc gcgccgccgc gccgcgccgc gatgggcatc gcgcgtactt tccagggcat
     1981 ccagacctac gagtcgatga cggtgcgcga gaacatcctc tgcgggtgcc attgccgcat
     2041 gcgcaccggc ctcatcgccg gcgcgctgtg gtgggggccg gggcggcgcg agatggtgcg
     2101 cttcatcgac gaggccgaga ccatcatcga gtttctcgag ctcgaggaat tgcgacacgc
     2161 gcgcgtcggc gacctcggct acggcctgcg caagcgcgtc gacctgggcc gcgcgctcgc
     2221 catcgatccg aaggtgctga tcctcgacga gcccatggcc ggcatgaacg ccgacgagaa
     2281 ggccgacctc gctcgctaca tcctcgacat caacgaagcg cgcgatgtgc cggtcgtgct
     2341 ggtcgagcac gacatggaag tggtgatgga catctccgac cgcgtgatgg tgctcgaatg
     2401 gggccgaacc atcgccgacg gcacgccggc cgaagtgcgc gccgatcaga aggtcattca
     2461 ggcttacctc gggcaggaat gatggacctg caaggcagct atggcgacga cgcgcgcgag
     2521 ccgaacggcg agaccttgcc gcgcctcttg cgccgccgcg ccgccgagca tggcacgcgc
     2581 gatttcctgc gcgcgaagcg ccacggcgtc tgggccgcga cctcgtggag cgcgacgctc
     2641 ggccgggtcg aggcgctggc gcgggcgatg atcgcgcgcg gcgtgaagcg cggcgacgtg
     2701 atcgccgtga tcggcgagaa cgtgccggag gcctacctgg tccagtacgc cgcgctctgc
     2761 gccggcgccg cagccacgca cctctatccg gacgcgtcgg ccgcggagct cggcttcgtg
     2821 ctcaagaaca gcggcgctgc actgctgttc gctgaagacc aggagcaggt cgacaaattc
     2881 ctgcagtcgg gcgatgcgca ggccgcggtg cttggagtcg tgtacctcga cgaacgcggt
     2941 ctttgggact acacgaaccc gcggctgctg tcgttcgatc gcttcgtcgc gagcgcgccg
     3001 ggtgacgccg cggcccgcgc cgagctcgat gcgcgcatcg cggccggcac cgacgccgat
     3061 ctcgctgcgc tctgctacac ctcgggcacg accggaagcc cgaaaggcgt gcgtctgacg
     3121 catcggcatt tgctcgacaa cgcttatcgg ttgatcgcga gcttcggcat cgcgccgcac
     3181 atcgactatt tctcgtacat ctcgccggcc tgggctgccg agcagttcac cggtgtcggc
     3241 ttaagcttgc tcgcgccggc cgtcgtgcac tttgccgaga aacccgagac ggtgccgacc
     3301 gatatgcgcg agatcagccc cgagttcctg ctcttcacgc cgcgccagtg ggaaatgatc
     3361 gcgtcgcagg tcgaagcgca gatgctcgac gctaagccga tgcgccggcg cctctatcaa
     3421 tgggccatca ccgcgccgcc gcggatgcgc tggctcgctg atgcgctggt cctgcgcgcg
     3481 atccgcgaca ataccggcct cgctcgcgcc aagtttccga ttagcgctgg ctccggcttg
     3541 tcggccgaga ttttccgccg cttccatgcg ctcggcatcc cgctgcgcaa cctgtacggc
     3601 tcgaccgagg ccggcctcgt ctcggcgcat tggggggccg aggccgagcc gtcgacgctc
     3661 ggccggccgt tgaagatcgc gcgctcggtc ggcacaccgc tcgaactgcg tatcgccgcc
     3721 gacggcgagc tcctcgtgcg cggtggcgcc ggcttcgccg gttaccacgg cgatgccgaa
     3781 gccacgcgca aggtgcttga tgccgagggc tggttccaca ccggcgatgc gatgcacgta
     3841 tccgagtcgg gcgaactggt cttcctcgat cgagtgaaag atatgcgctg gctctccacc
     3901 ggcagccgct tcccgccgca aacgatcgag aaccatctgc gtgcctcgcc gttcctgcgc
     3961 gatgcgatcg tgctcggcga cgagacgcgc ggcttcatcg cggcgctgat caatgtcgat
     4021 tcgggcatct tcggccgcta cctcgagagt cgcaacatcg gatggggcac tttcgccgag
     4081 ctgagccagc tcgacgccgt gctcgagcgg gtcgggctcg aagtggaaag ggtcaacgcg
     4141 atgctgccgg cctcgtcgcg catcggccgc ttcgcaaccc tgccgaaaga gctcgacgcc
     4201 gacgatgccg agctgacgcg ttcgcgcaag ctcaaacgcg acgtcatcgc caatcgttat
     4261 gcagcgctga tcgagagtgt gtacgccggc gacgagagct gccagctcac cgtcagcgtg
     4321 atctatcagg acggcaccgt cggcactgtg cacgccggcg tgcgcatctt gtcgaccgat
     4381 gccgcgtccg tggcggcctg acgcgatgga cctgctgcag atcacgatcg aaggcattct
     4441 cactggactg gtgtacgggt tggtcgcgct cgctttcgtt gtcatcttcc gcgcttcgcg
     4501 catcgtcaac ctggcgcagg gtcagctggt gctggtcggc gcctatgtga tgggttcgct
     4561 gctgacgagc ctgccgctgc cggccgcgat cgtgctggcg ctgggcgcga gcctcttgat
     4621 cggcgtggca atcgagcgct tcgtgttccg gccgctgatt ggccagcc
//
LOCUS       DASVHM010000058         3464 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1085634, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000058 DASVHM010000000
VERSION     DASVHM010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3464
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1085634"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VF308_01080"
     CDS             complement(<1..269)
                     /locus_tag="VF308_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010458167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HEX7435272.1"
                     /translation="MPATPTLDFATCDLCDVHKNDTSGAFRVLPPVLRDYGGVPKFAG
                     PVSTVKCFEDNSLVKTALDGPGDGRVLVVDGGGSLRRALVGGNIGA"
     gene            complement(310..2037)
                     /locus_tag="VF308_01085"
     CDS             complement(310..2037)
                     /locus_tag="VF308_01085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018902981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HEX7435273.1"
                     /translation="MNPPATPRLAGHVLVEALIAQGIDTAFGVPGESFLAALDGFYEH
                     RDRIRFIACRQEGGATFMAEAQGKLTGRPGVCFVTRGPGASNAAVGLHTAFQDSTPLV
                     LFIGQVAREQRDREAFQEVDYRQMFGPGTLGFAKWVAEIEDADRLPEYVARAFRTAMQ
                     GRPGPVVLALPEDMLSAVTAAPVLPRVEAVAAWPAPGALRDLRALLMGAEKPFVIVGG
                     SGWDASSCEALQRFAEGWNLPIGCAFRFQDLFDNRHPLYAGDVGIGINPKLARRVQDA
                     DLVLAIGARLGEMTTGGYTLLQAPRPRQKLVHVHAGAEELGRVYAADLMLQCSMAAAG
                     KALETLAPPTRLAWDDWTAQAHADYEGNLTAEPVRPLDMAEVVKTIQRLAPVDSVLAN
                     GAGNFSGWLHRYYRYPGLQHAGRTQLAPTSGAMGYGVPAAIAAALLYPDRTVINLAGD
                     GDFLMTGQELATATGYGAGKGRGRLISIVVDNGSYGTIRMHQEREYPGRVSGSDLFNP
                     DFVALARAYGWRAERVEATAQFEAAFRAALATPQPTLLHLPLPAEVITSRTTLSAIRA
                     AANARKAGT"
     gene            2157..2807
                     /locus_tag="VF308_01090"
     CDS             2157..2807
                     /locus_tag="VF308_01090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015865962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX7435274.1"
                     /translation="MPAASAHVVELRTRDADRTQQAILRAAMAEFADKGLGGARIDAI
                     AERAGINKRLIYYYFDGKDRLFLAVLEQTYADIRSAEQALHLESADPVDAVRLLVAFT
                     WNHYVEHPEFLNLLNSENLHRARHLKQSKRIREMNSPLIQTLGDVLERGRREGVFRGG
                     VDPVQLYISIAGLAYFYLSNNPTLSTIFGRDLMSAKARAERLSHITELVMGYVLRD"
     gene            2869..>3464
                     /locus_tag="VF308_01095"
     CDS             2869..>3464
                     /locus_tag="VF308_01095"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX7435275.1"
                     /translation="MDLAFYRHQGHLTVNGVFAADEMDAITRDIEQWGESFLSELPED
                     QRGWFIDGGVKARTVLRKLDNPHVHREAVRTLARDPRLVDLVERVLGPGVSVYFSQIF
                     FKAPEGGGPKPAHQDNFYFGPTDIEGIVTAWIALDDATLENGCLYFGDGTNQGPVYAH
                     FAPEDEPFNLQLPAAVLDRQPMAPAPVRKGGVSFHHGNT"
BASE COUNT          550 a         1203 c         1178 g          533 t
ORIGIN      
        1 gcgccgatgt tgccgccgac cagcgcgcgc cgcagcgacc cgccgccgtc gaccacgagc
       61 acccggccgt cgcccggccc atcgagcgcg gtcttgacga gcgagttgtc ctcgaagcac
      121 ttgacggtgc tgaccggtcc ggcgaacttc ggcacgccgc catagtcgcg caacaccggc
      181 ggcagcacgc gaaacgcgcc gctcgtgtcg ttcttgtgca cgtcgcagag gtcgcaggtc
      241 gcgaaatcga gggtcggcgt ggcgggcatg gttgtcgctc tttcgatggg ttgctgcgtc
      301 ggcgcgctct caggtcccgg ccttgcgggc gttcgccgcc gcacggatcg cggagagcgt
      361 cgtgcggctg gtgatcacct cggcgggaag cggcaggtgc agcaaggtcg gctgcggggt
      421 cgcgagcgcg gcgcgaaacg cggcctcgaa ttgcgcggtc gcctcgacgc gctccgcgcg
      481 ccagccgtag gcgcgggcca gcgcgacgaa atcgggattg aacaggtcgc tgccgctcac
      541 gcggcccgga tattcgcgct cctggtgcat ccggatcgtg ccgtagctgc cgttgtcgac
      601 gacaatgctg atcagccggc ctctgccctt gccggcaccg tagccggtcg cggtggcgag
      661 ctcctggccg gtcatcagga agtcgccgtc gccggcgaga ttaatcaccg tgcggtccgg
      721 gtagagcaag gccgcggcga tggccgccgg gaccccgtag cccatggccc ccgaagtcgg
      781 cgcgagctgg gtgcgccccg catgctgcag cccgggatag cggtagtagc ggtgcagcca
      841 gccgctgaag ttgccggcgc cgttggccag cacgctgtcg accggggcga ggcgctggat
      901 cgtcttcacg acctcggcca tgtcgagcgg tcgcaccggt tcggcggtga ggttgccttc
      961 gtagtcggca tgcgcctgcg cggtccagtc gtcccacgcc agccgggtgg gcggtgcgag
     1021 ggtctcgagg gccttgcccg cggcggccat cgagcattgc agcatcaggt cggccgcata
     1081 gacgcgcccg agttcctcgg cgccggcatg cacgtggacg agcttctggc gcggccgcgg
     1141 cgcctgcagc agggtatagc cgccggtcgt catttcaccg aggcgtgcgc cgatcgcgag
     1201 cacgaggtcg gcgtcctgga cgcgccgcgc gagtttcgga ttgataccga tgccgacgtc
     1261 gccggcgtag aggggatggc ggttgtcgaa caggtcctgg aaccggaacg cgcagccgat
     1321 cggcagattc cagccctcgg cgaagcgctg cagggcctcg caggaactcg cgtcccagcc
     1381 gctgccgccg acgatgacga agggcttctc ggctcccatc agcagcgccc tcaggtcgcg
     1441 caacgcgccc ggcgcgggcc aggccgcgac cgcctcgact cgcggcaaga ccggcgccgc
     1501 ggtgaccgcg ctaagcatgt cttcgggcag cgccagcacg accgggccgg gccggccctg
     1561 catggcggtg cggaaggccc gcgcgacgta ctcgggcaag cgatccgcat cctcgatctc
     1621 ggccacccac ttcgcgaagc cgagcgtgcc gggcccgaac atctgccggt agtcgacctc
     1681 ctggaaggcc tcgcgatcgc gctgctcgcg cgcgacctga ccgatgaaga ggaccagcgg
     1741 cgtgctgtcc tggaaggccg tgtgcaggcc gaccgcggca ttgctcgcgc ccggcccgcg
     1801 ggtcacgaag cagacgcccg gacggcccgt cagcttgccc tgcgcttcgg ccatgaacgt
     1861 cgcgccgccc tcctgccggc aggcgatgaa gcggatgcga tccctgtgtt catagaagcc
     1921 atcgagcgcg gccaggaaac tttcacccgg cacaccgaac gccgtgtcga tgccctgggc
     1981 gatcaaggct tcgacgagca cgtgaccggc aaggcgcggc gtggcaggcg ggttcatggg
     2041 tgcgtgcgcg tgactgaaga aagggagtgt gccttcatcc gtgagcgggg cccggacgct
     2101 tccgcctagg gttgatccgg atggccgcaa ttcactaaac ggtgcattat ttgagcatgc
     2161 cggcagccag cgcccacgtc gtcgaactgc gcacgcgcga tgccgatcgc acgcagcagg
     2221 cgatcctgcg cgcggcgatg gccgagttcg cggacaaagg gctcggcggc gcccgcatcg
     2281 atgcgattgc cgagcgcgcc ggcatcaaca agcgcctgat ctactactat ttcgacggca
     2341 aggaccggct cttcctcgcc gtgctcgagc agacctatgc cgacatccgc agcgccgagc
     2401 aggccctgca cctcgagtcg gcggatccgg tcgacgcggt gcgcctgctc gtcgcattca
     2461 cctggaacca ctacgtcgag cacccggagt tcctgaacct gctcaacagc gagaatctgc
     2521 atcgggcccg ccacctgaag cagtccaagc gcatccgcga gatgaattcg ccgctgatcc
     2581 agaccctcgg cgacgtgctc gagcgcggcc gccgcgaggg cgtcttccgc ggcggcgtcg
     2641 atccggttca gctctacatc tcgatcgcgg ggctcgccta tttctacctc tccaacaacc
     2701 cgacgctgtc gacgatcttc ggccgcgacc tgatgtcggc gaaagccagg gccgaacgcc
     2761 tgtcccacat caccgaattg gtgatgggct atgtgctgcg cgactgactc cgtcctaatt
     2821 caccatccgg ttcggctcac gatgccacgc aagcccctca tggacgccat ggacctggcc
     2881 ttttaccggc accaggggca cctgacggtc aacggcgtgt tcgccgcgga cgagatggac
     2941 gcgatcacgc gcgacatcga gcaatggggc gagagcttcc tgagcgagct gcccgaagac
     3001 cagcgcggct ggttcatcga tggcggcgtg aaggcgcgga ccgtgctgcg caagctcgac
     3061 aacccgcacg tccatcgcga ggcggtcagg acgctcgcgc gcgaccctcg cctcgtcgac
     3121 ctggtcgagc gcgtcctcgg ccccggcgtc tcggtctact tcagccagat cttcttcaag
     3181 gcgcccgagg gcggcggtcc gaagccggcg caccaggaca atttctactt cggcccgaca
     3241 gacatcgagg gcatcgtcac cgcatggatc gcactcgacg atgcgacgct cgaaaacggc
     3301 tgcctctatt ttggcgacgg caccaaccag gggccggtct acgcgcactt cgcgcccgag
     3361 gacgaaccct tcaacctgca gctgcccgcc gcggtgctcg acaggcagcc gatggcgccg
     3421 gccccggtga gaaaaggcgg ggtcagcttt caccacggca acac
//
LOCUS       DASVHM010000059         3024 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1014099, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000059 DASVHM010000000
VERSION     DASVHM010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3024
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1014099"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..681
                     /locus_tag="VF308_01100"
     CDS             <1..681
                     /locus_tag="VF308_01100"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7435276.1"
                     /translation="YLCVYYAERHVASGLVAVGYSASPLITGLGARALFGTSVGWRFV
                     LGGVLGLIGVALIFWPEFGKAQEGAHVALGAVFTVGSVFLSAVGSLAASRNRACGLPF
                     WPALGFGMLYGAATCLAIGAARGQSFALPGAASWWVALLYLTLAGSVLTFACFLTLQD
                     RIGPGPTGSIGVMTPLLALLVSMALESFRPDAYTALGAALAVIGNAMMLRRSSPLPVQ
                     RAGVATAQ"
     gene            756..1850
                     /gene="ychF"
                     /locus_tag="VF308_01105"
     CDS             756..1850
                     /gene="ychF"
                     /locus_tag="VF308_01105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006477050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEX7435277.1"
                     /translation="MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVV
                     ELPDPRLQALAAIVRPEKVVAAIVEFVDIAGLVAGASKGEGLGNQFLAHIRETDAIVN
                     VVRCFDDDNVIHVANKIDPVADIEVIQTELCLADMATVEKSLQRYSKAAKSGNDKEAQ
                     RLVDVLTKCMSALDQARPVRSVGFTKEEQALLKPFCLITAKPAMFVANVAEDGFVHNP
                     YLDQLRAFAERQHAPVVAICAKTEAELADMDDADRQMFLEAMGQSEPGLNRLIRAAFG
                     LLGLQTYFTAGVKEVRAWTIHVGDSAPQAAGVIHTDFERGFIRAQTIAFDDFIAFKGE
                     HGAKEAGKMRAEGKDYIVKDGDVLNFLFNV"
     gene            1975..>3024
                     /locus_tag="VF308_01110"
     CDS             1975..>3024
                     /locus_tag="VF308_01110"
                     /inference="COORDINATES: protein motif:HMM:NF017081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MASE1 domain-containing protein"
                     /protein_id="HEX7435278.1"
                     /translation="MGDVSGTGMALDSPGSEPARRRLPEHWIVAFAGTALAYALAGWA
                     GSLFAIAPGYASPLYPAAGIALASVLVYGRRMLPAVALGSLCADLASMLHGHPATGAA
                     FALAATFAIGAALQALLGATLVQRALREPLTLAEPADIGLFFGAGMVASCVSASLATI
                     VLSLSGAVPEAALPMTGATWWLGDLLGVLVAAPATLTLIGRPRDAWVPRRLSVGLTLV
                     LVTAFLAAGIGQAVRWNAERTRTAFERDAAGASLALAARLQEPLYALEALRGVLTVSR
                     DPTRAEIQVATKSWLDAGGLQAMGWSERVQGIDVASYEARNRAEGSTGYRVFDRDDAP
                     RPDAPAHTEERPPGLP"
BASE COUNT          416 a         1089 c         1018 g          501 t
ORIGIN      
        1 tacctctgcg tctactatgc ggagcgccat gtcgcctcgg gtttggtcgc ggtcggctac
       61 tcggcttcgc cactgatcac cgggctgggc gcgcgcgcgc tgttcggtac ttcagtggga
      121 tggcgcttcg tcctcggcgg cgtgctcggc ttgatcggcg tcgcgttgat cttctggccc
      181 gagttcggca aggcccaaga aggcgcccac gtcgcgctcg gcgccgtctt cacggtcggc
      241 tcggtgttcc tgtcggcggt cggcagcctg gcggcgagcc gcaaccgcgc ctgcggcctg
      301 ccgttctggc cggccctcgg cttcggcatg ttgtacggcg ccgccacatg cctcgcgatc
      361 ggcgcggcgc gcggccagag ctttgcgttg ccgggcgccg cctcgtggtg ggtcgcgttg
      421 ctctacctca cgcttgccgg gtcggtgctg accttcgcct gcttcctgac cctgcaggac
      481 cgcatcggcc cgggcccgac gggatcgatc ggcgtgatga cgccgctgct cgccctcctc
      541 gtctcgatgg cgctcgagag cttccggccc gatgcgtata ccgccctcgg cgcggcgctc
      601 gccgtcatcg gcaatgcgat gatgctgcgg cgaagctcgc cgctgccggt ccagcgcgcc
      661 ggcgtggcca ccgcgcagtg agggcattcc cgggagtggt gccctagaat ccgcgctcca
      721 cgcccagcgc cgaacctttt ccgagcatcg tttccatgag cctcaaatgc ggcatcgtcg
      781 gcctgcccaa cgtcggcaag tcgaccctgt tcaacgcgct gacgaaggcc ggcatcgcgg
      841 ccgagaacta tccgttctgc accatcgagc cgaacgtggg cgtggtcgaa ctgccggacc
      901 cgcgcttgca agcgctcgcg gcgatcgtcc ggcccgaaaa ggtggttgcg gccatcgtcg
      961 agttcgtcga catcgccggg ctggtggccg gcgcgtcgaa gggcgagggc cttggcaacc
     1021 agttcctcgc gcacatccgc gagaccgacg cgatcgtcaa cgtggtgcgc tgcttcgacg
     1081 acgacaacgt gatccacgtg gccaacaaaa tcgaccccgt cgccgacatc gaagtcatcc
     1141 agaccgagct ctgtctcgcc gacatggcga ccgtcgagaa gagcctgcag cgctattcga
     1201 aggccgccaa atccggcaac gacaaggagg cgcagcgcct cgtcgacgtg ctcaccaagt
     1261 gcatgagcgc cctcgaccag gcccgaccgg tgcgctcggt cgggttcaca aaagaggagc
     1321 aggcgctcct gaagcccttc tgcctgatca ccgccaagcc ggcgatgttc gtcgccaacg
     1381 tcgcggagga cggcttcgtg cacaacccct acctcgatca gctgcgcgcg tttgcggagc
     1441 gccaacacgc gccggtggtg gcgatctgcg ccaagaccga ggccgagctc gccgacatgg
     1501 acgatgccga ccgccagatg ttcctcgagg caatgggcca gagcgagccc ggcctaaacc
     1561 ggctgattcg cgccgccttc ggcctcctcg gcctgcagac ctacttcacc gccggtgtga
     1621 aggaagtgcg cgcctggacc atccatgtcg gcgacagcgc gccgcaggcg gccggcgtga
     1681 tccacaccga tttcgaacgc ggcttcatcc gcgcccagac catcgccttc gacgacttca
     1741 tcgccttcaa gggcgagcac ggcgcgaagg aggcgggcaa gatgcgcgcc gagggcaagg
     1801 actacatcgt caaggacggc gatgtgctga atttcctgtt caacgtctga atcggctggc
     1861 ggctcctgca cggcgccttg ccggcgcgta aattgcaagg tttgggtggt aggctgccgg
     1921 cctcacacgc ggccccttga cgccgcttcg gctgccacat cgcatggcgt tgcggtgggc
     1981 gacgtttcag ggactggaat ggcgctcgat tccccagggt cggaaccagc acgccggagg
     2041 cttccggagc actggatcgt cgcgttcgcc ggcaccgcgc tggcctacgc gctggcggga
     2101 tgggccggat cactcttcgc gattgcgccg ggttatgcct cgccgctata cccggccgcc
     2161 ggcatcgcgc tcgcgagtgt gctcgtctat gggcgccgca tgctcccggc cgtcgccctc
     2221 ggatcgctgt gcgccgacct ggcgtcgatg ctgcacggcc accccgccac cggcgcggcg
     2281 ttcgctctcg cggccacatt cgcgatcggc gcggccctgc aggcgctgct gggcgcgacc
     2341 ctggtgcagc gcgccttgcg cgagccgctc acgctcgccg agccggcgga tatcggcctt
     2401 ttcttcggcg ccggcatggt ggcgagctgc gtcagcgcga gtctcgcgac gattgtcctc
     2461 agcctctccg gcgccgtgcc ggaggcggcg ctgccgatga ccggcgcgac ctggtggctg
     2521 ggcgacctgc tcggcgtgct ggtcgcggcg cccgccaccc tgaccctgat cggccgaccg
     2581 cgcgacgcct gggttccgcg ccgcctctcg gtgggattga cgctggtgct ggtcactgcc
     2641 ttcctggccg ccggcatcgg ccaggcggtg cgctggaacg ccgagcgcac ccgcaccgcc
     2701 ttcgagcgcg acgccgccgg cgcctcgctc gcgctcgccg cgcggctcca ggaaccgctc
     2761 tacgcgctcg aggccctgcg cggcgtgctc accgtctcgc gcgatccgac gcgggccgag
     2821 atccaggtcg cgacgaagag ctggctcgat gccggcggcc tgcaagccat gggctggagc
     2881 gagcgggtac agggcatcga tgtggcctcc tacgaggctc gcaaccgcgc cgagggatcg
     2941 accggctacc gcgtcttcga ccgcgacgac gcgccgcggc cggacgcccc cgcgcatacc
     3001 gaagaacggc cgccaggcct tccc
//
LOCUS       DASVHM010000060         1596 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1373965, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000060 DASVHM010000000
VERSION     DASVHM010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1373965"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            240..>1596
                     /locus_tag="VF308_01115"
     CDS             240..>1596
                     /locus_tag="VF308_01115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009517602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7435279.1"
                     /translation="MPSSAAVGYAEFHRRSLVERDAFWAEQARLIDWERPFETVCDYS
                     RAPFTSWFGGGRTNLCHNAVDRHLRERGEQSALIYVSTETDEERTYSFRELHAEVQRM
                     AACLLALGARQGERVLIYMPMIPQAVFAMLACARIGAIHSVVFGGFASGSLASRIDDA
                     EPTLVVSADAGSRSGKVVAYKPLLDEAIRLARHKPAKVLLVDRGLAPMGRTAGRDEDY
                     AALRERHLDAVVPCTWLESTEPSYTLYTSGTTGSPKGVQRDVGGYAVALAASMKHIFL
                     GEPGETYFSTSDIGWVVGHSYIVYGPLLAGMATIMYEGLPIRPDAGIWWSLVEKYKVS
                     AMFSAPTAVRVLKKQDPAFLKKYDLSSLKALFLAGEPLDEPTARWISDGLGVPIIDNY
                     WQTESGWPILALANGVEKRASKFGRPGVPMYGFDVKLVHESTGEELTRPNEKGVVVIE
                     GP"
BASE COUNT          275 a          531 c          543 g          247 t
ORIGIN      
        1 catcagccgc gtctgcggat cgatgatcag taacgtggat tcgtcggcat ggcacagcgt
       61 ggtcatcggc ggttcctttc gtctcggggt cggacgagcg acgccattct gcgcgcagca
      121 gcgagttcat agaatggctc ggtcgacgcg gcccgcaaag accgggaatg cttgacctgc
      181 cgcaaaccgc gccgcggcgc cgcgacgacc attcctgaat ccaccgccgg gagtcccgaa
      241 tgccatcgtc cgccgctgtc ggctacgccg aattccaccg ccgttcgctc gtcgagcgcg
      301 acgccttctg ggccgaacag gcccgactca tcgactggga gcgtccgttc gagaccgtct
      361 gcgactacag ccgggccccc ttcacgagct ggttcggcgg cggccgaacc aacctgtgcc
      421 acaacgccgt cgaccggcat ctgcgcgagc gcggcgagca gagcgcgctg atctatgtct
      481 cgaccgagac cgacgaagag cgcacctaca gcttccggga acttcacgcc gaagtgcagc
      541 gcatggcggc atgcctgctc gcgctcggcg cccggcaggg cgagcgcgtg ctgatctaca
      601 tgccgatgat tccgcaggcc gtgttcgcga tgctggcctg cgcgcgcatc ggcgcgattc
      661 attcggtggt gttcggcggc ttcgcgagcg gcagcctggc gagccgcatc gacgatgccg
      721 aaccgacgct ggtcgtcagc gccgacgcgg gcagccgctc cggcaaggtc gtggcctaca
      781 agccgctgct cgacgaagcg atccggctcg cgcgtcacaa gcctgccaag gtgctgctcg
      841 tcgaccgcgg cctcgcgccg atggggcgca cggccggccg cgacgaagac tacgccgccc
      901 tgcgcgagcg ccacctcgac gcggtggtgc cgtgcacttg gctcgagtcg accgagccga
      961 gctacacgct ctacaccagc ggcacgaccg ggtcgcccaa gggcgtgcag cgcgacgtcg
     1021 gcggttatgc cgtggcgctg gccgccagca tgaagcacat cttcctgggt gagccgggcg
     1081 aaacctattt ctccaccagc gacatcggct gggtggtggg ccatagctac atcgtctacg
     1141 ggccgctgct ggccgggatg gcgaccatca tgtacgaggg cctgccgatc cgccccgatg
     1201 ccgggatctg gtggagcctg gtggaaaagt acaaggtcag cgcgatgttc agcgcgccga
     1261 cagcggtgcg tgtgctcaaa aagcaggacc cggcgttcct caagaaatac gacctgtcca
     1321 gcctgaaggc attgttcctg gctggcgagc cgctggacga gccgaccgcg cggtggatca
     1381 gcgacggcct gggcgttccg atcatcgaca actattggca gaccgaaagc ggctggccga
     1441 tcctggcgct ggccaacggc gtcgaaaagc gggccagcaa gttcggccgc ccgggcgtgc
     1501 cgatgtacgg attcgacgtg aagctggtgc acgagagcac cggcgaggaa ctgacccggc
     1561 ccaacgagaa gggcgtggtg gtgatcgaag ggccga
//
LOCUS       DASVHM010000061         3334 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1085811, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000061 DASVHM010000000
VERSION     DASVHM010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3334
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1085811"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..1621)
                     /locus_tag="VF308_01120"
     CDS             complement(179..1621)
                     /locus_tag="VF308_01120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012247306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M81 family metallopeptidase"
                     /protein_id="HEX7435280.1"
                     /translation="MRVFSGGLATETNTFAPMPTGLSSFRDRGYYPAGKHPDQMSFFA
                     GPLWAARQRGKALGWDLVEGMVAAAQPSGTTTRVAYETLRDELLADLRAALPVDMVVL
                     GLHGAMVADGYDDCEGDLLARVRQLVGPKVVVGAELDPHNHLTPAMLANADLLIAFKE
                     YPHTDILDRAYELVDLCAAQVEGRIHPVASCVDCEMIVTMHTSREPARGFVDRIKALE
                     GKDGILSISVSHGFAWGDTAHMGTQVLVYSDGDAARGKKLARQLADELVGLREKLKVD
                     YPDIDRSLDEALAFEGGPVVLADGADNPGGGAAGDSTFILRRMLERGVRNACIGPLWD
                     PIAARIAFDAGVGATLMMRIGGKISALSGDPVDALCTVKALLSEMKMTGLAGTPLAMG
                     DSALVETAGIEIVLITLRNQAMGTDLFTQLGCDLAAKKIIVVKSSQHFFASFSKVAKH
                     VIYVGAPGAVTLDLNTLPYRKVRRPKWPLL"
     gene            complement(1661..2812)
                     /locus_tag="VF308_01125"
     CDS             complement(1661..2812)
                     /locus_tag="VF308_01125"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011519492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX7435281.1"
                     /translation="MQGDSTTDFLVIGAGIAAASVGYALASRGSVVLLERESQPGYHS
                     TGRSAALFMESYGTPQVRALTLASRPFLEHPPEGFTEVPILSPRGALMVATAQQLPLL
                     EEQWDVLRSITDQARRLDGPEACAMVPVLRRELVAGGVYEPDASDIDVHTLLQGYLRG
                     LRRRGGRVVGDAEVRALARRDGIWHVEAGGRTWQAPVVVNAAGAWCDVVGRLAGAAPI
                     GLVPKRRSAFVFAPPPGLATRHWPMFIGIDETWYVKPDAGLLLGSPANADPVEPHDVQ
                     PEELDIALAIDRIETMTTLQVVRPQRTWAGLRSFVADGDLVGGFDPEVPGFFWIAAQG
                     GYGIQTSAAMGEACAALAAGEPIPDSIAGFGLTEAMLSPARLRSSPAAA"
     gene            complement(2866..>3334)
                     /locus_tag="VF308_01130"
     CDS             complement(2866..>3334)
                     /locus_tag="VF308_01130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7435282.1"
                     /translation="LLARDHPQLVRRLVVSGANLTAGLPPEELKRRSQWSPQQLAEKV
                     RQFEEKLPPNFRADYQAVAPDGAGQWEKFLLKSYPLWLTPVVVETTDLKTIRTPVLVI
                     AGDKDFTSIEETVVIYRALPRGELLIVPGTGHMTFSERAELTNLAISEFLGRP"
BASE COUNT          525 a         1112 c         1192 g          505 t
ORIGIN      
        1 ggcacctcga ccaagtctcg ccgctgcgcg gcctcatgtt ctttgacccc gaataccgct
       61 tgcccgaagc gctcatgtga aagcaacgtg aatttgggcc tgcaaatgaa agtgactcgg
      121 cagccggccg agaccggcgg gctctcccgc ccggtgggct gctgcaggcg aaaggaactc
      181 aaaggagcgg ccacttcggc cgtcgcacct tccggtaagg cagcgtgttg aggtcgagcg
      241 tcaccgcgcc cggcgcgccg acgtagatca cgtgcttcgc gaccttcgag aacgacgcga
      301 agaagtgctg cgacgacttg acgacgatga tcttcttggc cgccaggtcg cagccgagct
      361 gcgtgaagag gtcggtgccc atcgcctggt tgcgcagcgt gatcagcacg atctcgatgc
      421 ccgcggtctc gaccagcgcc gaatcgccca tcgccaacgg cgtgcctgcc agccccgtca
      481 tcttcatctc cgacaggagc gccttgacgg tgcagagcgc atcgaccggg tcgcccgaga
      541 gcgcgctaat cttgccgccg atgcgcatca tcaaggtcgc gccgacgccg gcgtcgaatg
      601 cgatccgcgc cgcgatcgga tcccagagcg ggccgatgca agcgttgcga acgccgcgct
      661 cgagcatgcg ccgcaggatg aaggtcgagt cgccggccgc accgccgccc gggttgtcgg
      721 cgccgtcggc gagcaccacc gggccaccct cgaaggcgag cgcctcgtcg agcgagcggt
      781 cgatgtccgg gtagtcgacc ttcaatttct cgcgcaggcc gaccagttcg tcggcgagct
      841 ggcgcgcgag cttcttgccc ctggcggcgt cgccgtcgct gtagaccagc acctgcgtgc
      901 ccatgtgcgc cgtgtcgccc caggcgaagc cgtgcgagac cgagatcgag aggattccgt
      961 ctttgccttc gagggccttg atgcggtcga cgaagccgcg cgccggctcg cgcgaggtgt
     1021 gcatcgtgac gatcatctcg cagtcgacgc acgacgcgac cggatggatc cggccttcga
     1081 cctgggccgc gcacaggtcg acgagctcgt aagcgcggtc gaggatgtcg gtgtgcggat
     1141 attccttgaa ggcgatgagc aggtcggcgt tcgccagcat cgccggcgtg aggtggttgt
     1201 gcggatcgag ctccgcgccg accacgacct tcggtccgac cagttggcgc acccgcgcga
     1261 gcaggtcgcc ttcgcaatcg tcgtagccgt cggcgaccat cgcgccgtgc agcccgagca
     1321 ccaccatgtc cactggcagc gcggcgcgca ggtcggcgag cagctcgtcg cgcagcgtct
     1381 cgtaggcgac gcgcgtcgtc gtgccgctcg gctgcgccgc ggcgaccatc ccttcgacga
     1441 gatcccagcc gagcgccttg ccgcgctggc gcgcggccca gagcgggccg gcgaagaagc
     1501 tcatctggtc ggggtgtttg ccggccgggt agtagccgcg gtcgcggaac gagctgaggc
     1561 cggtgggcat cggggcgaag gtgttggttt cggtagcgag gccgccgctg aagacgcgca
     1621 tggggtgggc tttcgtgggc agaggggaag gcgcgttcgg tcaggccgcc gcaggggacg
     1681 agcgcaggcg cgccggcgag agcatcgcct cggtgagccc gaagcctgcg atggaatcgg
     1741 ggatcggctc gcccgcggcc agtgccgcgc aggcctcgcc catcgcggcc gaagtctgga
     1801 tgccgtagcc gccttgcgcg gcgatccaga agaatccagg cacctccggg tcgaagccgc
     1861 cgacgaggtc gccgtcggcg acgaaggagc gcaggccggc ccaggtgcgc tgcgggcgca
     1921 caacctgcag cgtggtcatc gtctcgatgc ggtcgatcgc gagtgcgatg tcgagctcct
     1981 cgggctgcac gtcgtgcggc tcgaccgggt cggcattcgc cggcgagccg agcaagaggc
     2041 ccgcatcggg cttcacgtac caggtctcgt cgatgccgat gaacatcggc cagtgccggg
     2101 tcgcgaggcc gggcggcggc gcgaacacga aggccgagcg gcgcttcggc acaagcccga
     2161 tcggcgcggc cccggcaagg cgcccgacga cgtcgcacca cgcgcccgcg gcgttcacta
     2221 ccaccggcgc ctgccaggtg cggccgccgg cctcgacatg ccagatgccg tcgcggcgcg
     2281 cgagcgcgcg cacctcggcg tcgccgacca cgcgcccgcc gcggcgacgc aggcctctca
     2341 gatagccctg gagcagcgtg tgcacgtcga tgtcggaggc gtcgggctcg tagacgccgc
     2401 cggcgacgag ttcgcggcgc agcaccggca ccattgcgca ggcttcgggg ccgtcgaggc
     2461 ggcgcgcctg gtcggtgatc gagcgcagca cgtcccactg ctcctcgagg agcggcagct
     2521 gctgcgcggt cgcgaccatc agcgcgccgc gcggcgagag gatgggcacc tcggtaaagc
     2581 cctcgggcgg atgctcgagg aaggggcggc tcgccagcgt cagggcgcgc acctgcggcg
     2641 tgccgtagct ctccatgaag agcgcggccg agcggccggt ggagtggtag ccgggctggg
     2701 attcgcgttc gaggagcacg accgagccgc gtgaggcgag agcgtagccg acggaggcgg
     2761 cggcaatgcc cgcgccgatg acgaggaagt cagtggtgga gtcgccctgc atgggggcat
     2821 tctcggggat gccaggcccg cacgtccctc ccgcctgaat ccagcctatg gtcgacccag
     2881 gaattcagag atcgccagat tcgtcagctc ggcccgttcg gaaaacgtca tgtggcccgt
     2941 gccgggcacg atcagcaact cgccgcgtgg tagcgcgcga tagatcacga ccgtctcctc
     3001 gatcgacgtg aaatccttgt cgcccgcgat cacgagcact ggcgtcctga tcgttttcag
     3061 atcggtggtc tcgacgacaa cgggagtgag ccaaagcgga taggacttca acaggaactt
     3121 ctcccactgc ccggcgccgt cgggtgcgac ggcttgatag tcggcacgaa agttcggcgg
     3181 aagtttctct tcgaattggc gtaccttttc ggccaactgc tgtggcgacc attgactgcg
     3241 tcgtttcagt tcctccggcg gcagccccgc cgtgagattg gctccggaga cgacgagacg
     3301 gcgcaccagt tgcgggtggt cgcgcgcaag gagg
//
LOCUS       DASVHM010000062         2668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1014220, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000062 DASVHM010000000
VERSION     DASVHM010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1014220"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..92
                     /locus_tag="VF308_01135"
     CDS             <1..92
                     /locus_tag="VF308_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019654394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEX7435283.1"
                     /translation="LINTGADGRQEVQHVHMHVMGGPRPWAKG"
     gene            129..374
                     /gene="tatA"
                     /locus_tag="VF308_01140"
     CDS             129..374
                     /gene="tatA"
                     /locus_tag="VF308_01140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011804230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HEX7435284.1"
                     /translation="MGSFSVWHWLIVLLIVVLVFGTKKLKNIGSDLGGAVKGFKDGVR
                     DGGAAAAADPVVPAPQVGTHKTAADPNTVDVEAKTRS"
     gene            394..876
                     /gene="tatB"
                     /locus_tag="VF308_01145"
     CDS             394..876
                     /gene="tatB"
                     /locus_tag="VF308_01145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HEX7435285.1"
                     /translation="MIDFGFDKIALIGAVALIVIGPEKLPRVARTVGHLIGKAQRYVA
                     DVKAEVNRSIELEELKKMKTEFEDAARDVEQTVSNEIHQTSADFDKSWQEATASLPTG
                     SGQHDGPVPPPEYRHPKKNWRLKRGAMPQWYKQRNGIRARAQSGAARVARFRPPRASA
                     "
     gene            888..1673
                     /gene="tatC"
                     /locus_tag="VF308_01150"
     CDS             888..1673
                     /gene="tatC"
                     /locus_tag="VF308_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEX7435286.1"
                     /translation="MSTGGKDPDELAGTEQPFVSHLVELRDRLIRASIAIGICFALLT
                     FWPGPSGLYDLLAAPLVAHLPKGSTMIATSVISPFLVPLKITLMAAFLLALPVVLYQV
                     WAFVAPGLYTHEKRLVMPLVISSTILFFVGVAFCYFFVFGQVFKFIQGFAPKSITAAP
                     DIEAYLSFVLTMFIAFGATFEVPVIVVVLARMGLVSIDKLKSFRSYFIVLAFIVAAVI
                     TPPDIVSQLALAIPMVLLYEVGIWAAQVFIKHTQAPSEEKTAP"
     gene            complement(1687..>2668)
                     /locus_tag="VF308_01155"
     CDS             complement(1687..>2668)
                     /locus_tag="VF308_01155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015012697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX7435287.1"
                     /translation="GAAKRAAPAVVSITTSRASARPPGTDDPMFRFFFGDRARQLQDE
                     RQFGLGSGVIVSANGYLLTNNHVVEGADDIEVALSDGRSAKARVVGTDPDSDVAVLKI
                     ELDRLPAVSFGSIDSAEVGDVVLAIGNPFGVGQTVTAGIISALGRSQLGINTFENFIQ
                     TDAAINPGNSGGALVDANGNLLGINTAIYSRSGGSLGIGFAIPVSTARQVMESLIKEG
                     RVTRGWIGVEPRDLTPEIAQTLNLPIKQGVLITGVLQNGPASAGGMRPGDVVVKIAGM
                     PIANTSQLLNAVAALKPQVNATIGVQRGDKALDLNVTVAQRPPAKPQPER"
BASE COUNT          412 a          905 c          893 g          458 t
ORIGIN      
        1 ccctgatcaa caccggggcc gacgggcgcc aggaagtgca gcacgtccac atgcacgtca
       61 tgggcgggcc gcggccctgg gcgaagggct gacctagaat tcagccattc ctttccggga
      121 gaagaaacat gggttcattc agcgtttggc actggttgat cgtgcttttg atcgtggttc
      181 tggtgttcgg cacgaagaag ctgaagaaca tcggctccga tctcggcggt gcggtgaagg
      241 gcttcaagga cggcgtgcgc gacggcgggg ccgccgctgc ggccgatccg gtcgtgccgg
      301 cgccgcaggt cggcacgcac aagaccgcgg ccgacccgaa cacggtcgac gtggaagcca
      361 agacccggtc ctgatccgcg ccgcgttgcc cgcatgatcg acttcggctt cgacaagatc
      421 gcgctgatcg gcgcggtcgc gctcatcgtc atcgggcccg agaagctgcc gcgcgtcgcg
      481 cgcaccgtcg gccatctgat cggcaaggcg cagcgctacg tcgcggacgt gaaggccgag
      541 gtgaaccgct cgatcgaact cgaagaactg aagaagatga agaccgagtt cgaagacgcg
      601 gcccgcgacg tcgagcagac ggtctccaac gagatccacc agaccagcgc cgatttcgac
      661 aagtcgtggc aggaagccac ggcgtcgctg ccgaccggca gcggacagca cgatggcccg
      721 gtgccgccgc ccgagtaccg gcatccgaag aagaactggc gtctgaagcg cggcgcgatg
      781 ccgcagtggt acaagcagcg caacgggatc cgcgccaggg cgcagtcggg cgcggcgcgc
      841 gtggcgcgct tccggccgcc gcgcgcttcg gcgtaggcgc ggccgcgatg agcaccggcg
      901 gcaaggaccc ggacgaactt gccggcaccg aacagccctt cgtctcgcac ctggtcgaac
      961 tgcgcgaccg cctgatccga gcctccatcg cgatcggcat ctgcttcgcg ctgctgacct
     1021 tctggcccgg cccgagcggg ctctacgacc tgctcgccgc gccactcgtc gcgcacctgc
     1081 ccaagggcag cacgatgatc gcgaccagcg tcatctcgcc gttcctcgtg ccgctcaaga
     1141 tcacgctgat ggcggctttc ctgctcgcac tgccggtcgt cctgtatcag gtctgggcct
     1201 ttgtcgcgcc gggtctgtac acgcacgaga agcgcctcgt catgccgctc gtcatctcga
     1261 gcaccatcct ctttttcgtc ggcgtcgcgt tctgttattt cttcgtcttc ggccaggtgt
     1321 tcaagttcat ccagggcttc gcgccgaaga gcatcaccgc tgcgccggac atcgaggcct
     1381 acctcagctt cgtgctgacc atgttcatcg ccttcggcgc gacgttcgag gtgccggtga
     1441 tcgtcgtcgt gctcgcccga atgggcctgg tcagcatcga caagctgaag agcttccgca
     1501 gctacttcat cgtgctcgcg ttcatcgtcg ccgcggtgat cacgccgccc gacatcgtct
     1561 cgcagctcgc gctcgcgatc ccgatggtgc tgctctacga ggtcggcatc tgggcggcgc
     1621 aggtcttcat caagcacacc caggcaccgt cggaggaaaa gaccgcaccg tagcctgcgt
     1681 gccggctcaa cgctcgggct gtggcttggc cggcgggcgc tgcgccacgg tcacgttcag
     1741 gtcgagcgcc ttgtcgccgc gctgcacgcc gatcgtcgca ttcacctggg gcttgagcgc
     1801 ggccacggca ttgagcagct gcgacgtgtt cgcgatcggc atgccggcga tcttcacgac
     1861 gacgtcgccc gggcgcatgc cgccggcgct ggccggaccg ttctgcagta cgccagtgat
     1921 gagcacgccc tgcttgatcg gcaggttgag ggtctgcgcg atctcggggg tcaggtcgcg
     1981 cggttcgacg ccgatccagc cgcgcgtgac ccgcccttcc ttgatgaggc tttccatcac
     2041 ctgccgcgcg gtgctgaccg ggatcgcgaa gccgatgccc aggctgccgc cgctgcgcga
     2101 atagatcgcg gtgttgatgc cgagcaggtt gccgttcgca tcgacgaggg cgccgcccga
     2161 gttgccgggg ttgatcgcgg cgtcggtctg gatgaaattc tcgaacgtgt tgatgccgag
     2221 ctggctgcgc ccgagcgcgc tgatgatgcc ggccgtcacc gtctgcccga cgccgaacgg
     2281 attgccgatc gcgagcacga cgtcgccgac ctcggcgctg tcgatcgagc cgaagctgac
     2341 ggccgggaga cggtcgagct cgatcttcag caccgcgacg tccgagtccg ggtcggtgcc
     2401 gacgacccgc gctttcgcgc tgcggccgtc gctcagcgcc acttcgatgt cgtcggcgcc
     2461 ttcgaccaca tggttgttgg tgagcaggta gccgttggcc gagacgatca cgcccgagcc
     2521 cagtccgaac tggcgctcgt cctgcaactg gcgcgcccgg tcgccgaaga agaagcgaaa
     2581 catcgggtcg tcggtgccgg gcgggcgcgc cgaggcccgg ctcgtcgtga tgctcacgac
     2641 cgccggcgcg gcacgcttgg cggcgccg
//
LOCUS       DASVHM010000063         2022 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1374221, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000063 DASVHM010000000
VERSION     DASVHM010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1374221"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..397
                     /locus_tag="VF308_01160"
     CDS             <1..397
                     /locus_tag="VF308_01160"
                     /inference="COORDINATES: protein motif:HMM:NF017828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-hydroxyacyl-CoA dehydratase family protein"
                     /protein_id="HEX7435288.1"
                     /translation="GLYDRGFRHDPDHPLETLADYCLGCYTNLGLPTRVDLLEGYIRD
                     YSANGFLINSVKSCNSFSVGQLMMLRQLETRTGVPGLFIENDLVDPRYFSGANVKNRL
                     ESYFQMVKQKRTASAGAGGPAFIPIVAAH"
     gene            411..1751
                     /gene="bcrA"
                     /locus_tag="VF308_01165"
     CDS             411..1751
                     /gene="bcrA"
                     /locus_tag="VF308_01165"
                     /EC_number="1.3.7.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR02259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018522 - benzoyl-CoA reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA reductase subunit A"
                     /protein_id="HEX7435289.1"
                     /translation="MRCFIGIDLGSTTTKAVVMDENQNILGRGITNSRSNYDTAAAIA
                     KQEALVNSRFHLFREALGSTNALNGSLDAFLGQLERDFRSEQYLEQLGDLAETCQRSL
                     ATAKFGAGSEGVGATLVEVFRRITAEAPTLFAPGANRKSDFFRDIAGSQYLATGEIVA
                     KESGTRYDHLLNVFDRSIIEVENRVYGDSIRRHLLAALERSFLALPETASRREQVEAP
                     IKGILDTELEETYTVGTGYGRARLPFSKEHVRSEILCHGLGAHVMYPRTATVLDIGGQ
                     DTKAIQVDPNGIVESFQMNDRCAAGCGRYLGYIADEMNMGLHELGPMAMKSTKSIRIN
                     STCTVFAGAELRDRLALGDKREDIMAGLHRAIILRAMSILARSGGVRDEFTFTGGVAK
                     NQAAVKALNDLVKENYGELKLNIDPDSIYTGALGGATFAWRAVVEDGKTAEARA"
     gene            1768..>2022
                     /locus_tag="VF308_01170"
     CDS             1768..>2022
                     /locus_tag="VF308_01170"
                     /inference="COORDINATES: protein motif:HMM:NF013986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BadF/BadG/BcrA/BcrD ATPase family protein"
                     /protein_id="HEX7435290.1"
                     /translation="MTVTIGIDIGSGAVKSTLFRVDGGEPQWLAKRCERIRRRDPMTL
                     AQEGRDGVLAEAGLGLDDVDYVATTGEGENVKFATGHFYSM"
BASE COUNT          370 a          717 c          642 g          293 t
ORIGIN      
        1 cggcctctac gaccgcgggt tccgccacga tcccgaccat cccctggaaa cgctcgccga
       61 ctattgcctc ggctgctaca cgaacctcgg tctgcccacg cgcgtcgatc tgctggaggg
      121 ctacatccgc gactacagcg ccaacggatt cctgatcaac agcgtgaaga gctgcaactc
      181 cttcagcgtc gggcaactga tgatgctgcg gcaactggaa acgcgaacag gcgtcccggg
      241 cctcttcatc gagaacgacc tcgtcgatcc gcgctatttc tccggagcga acgtgaagaa
      301 ccgcctcgag agctacttcc agatggtcaa gcagaagcgc acggcctcgg cgggcgccgg
      361 gggtccggcg ttcattccga tcgttgcggc gcactgaggc ggagatcacc atgcgctgct
      421 tcatcggcat cgacctcggc tcgacgacga ccaaggccgt cgtcatggac gagaaccaga
      481 acatcctcgg ccgcggcatc accaattcgc gctcgaacta cgacacggcc gcggcgatcg
      541 ccaagcagga ggctctcgtc aacagccgct tccacctgtt tcgggaggcg ctcggcagca
      601 ccaacgcgct gaacggatcg ctcgatgcct tcctcggcca gctcgagcgc gacttccgct
      661 ccgagcagta cctcgagcag ctcggcgacc tggccgaaac gtgccagcgc agcctggcga
      721 cggcgaagtt cggcgcgggc agcgaagggg tcggcgcgac cctcgtcgag gtgttccggc
      781 gcatcaccgc ggaggcgccg acgctgttcg cgcccggcgc gaaccgcaag tcggacttct
      841 tccgcgacat cgccggcagc cagtacctcg ccaccggcga gatcgtcgcc aaggaatccg
      901 gcacgcgcta cgaccacctc ctgaacgtct tcgaccgctc gatcatcgag gtcgagaacc
      961 gcgtctacgg cgattcgatc cggcgccacc tgctcgccgc gctcgagcgc agcttcctgg
     1021 cgctgccgga gacggcatcg cggcgcgagc aggtcgaggc gccgatcaag ggaatcctcg
     1081 acaccgagct ggaggagacc tacacggtcg gcaccggcta cggccgggcg cgcctgccgt
     1141 tctcgaagga gcacgtgcgc tcggagatcc tgtgccacgg gctcggcgcg cacgtgatgt
     1201 atccgcgcac cgccaccgtg ctggacatcg gcggccagga cacgaaggcg atccaggtcg
     1261 acccgaacgg catcgtcgag agcttccaga tgaacgaccg ctgcgccgca ggctgcgggc
     1321 gctacctcgg ctacatcgcc gacgagatga acatgggcct gcacgagctc gggccgatgg
     1381 cgatgaagtc gaccaagtcg atccgcatca actcgacctg cacggtgttc gccggcgccg
     1441 agctgcgcga ccggctcgcc ctcggcgaca agcgcgagga catcatggcc ggcctgcacc
     1501 gcgcgatcat cctgcgcgcg atgtcgatcc tggcgcgctc gggcggcgtc cgcgacgagt
     1561 tcaccttcac cggcggcgtg gccaagaacc aggccgcggt caaggcgctc aacgatctcg
     1621 tcaaggaaaa ctacggcgag ctcaagctca acatcgatcc ggattcgatc tacaccggag
     1681 ccctcggcgg cgcgaccttc gcctggcgcg ccgtcgtcga ggacggcaag accgccgaag
     1741 cgcgggcata ggccccaagg agttcacatg accgtcacga tcggcatcga catcggctcc
     1801 ggagccgtca agagcacgct gttccgcgtc gacggcggcg agcctcaatg gctcgcgaag
     1861 cgctgcgaac ggatccgccg gcgcgatccg atgaccctgg cgcaggaggg ccgcgacggc
     1921 gtcctcgccg aggccggcct cggcctcgac gacgtcgact acgtcgccac caccggcgag
     1981 ggcgagaacg tcaagttcgc caccggccac ttctattcga tg
//
LOCUS       DASVHM010000064         4738 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1230139, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000064 DASVHM010000000
VERSION     DASVHM010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4738
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1230139"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..885
                     /locus_tag="VF308_01175"
     CDS             <1..885
                     /locus_tag="VF308_01175"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7435291.1"
                     /translation="ARDVAFLGLGVMGFPMAGHLASAGHRVSVYNRSAAKAARWVAEY
                     GAASAATPRLAASGADIVCACVGNDDDLRSVVLGEDGAYAGMRSGAIFVDHTTASAEV
                     ARELGARARERGLAFIDAPVSGGNLGAVNGTLTVMCGGGATAFEAARPIVAAYAKAVT
                     LLGENGAGQLAKMVNQVAIAGLLQGLAEAIVFGERAGLDMKAVLGVIGKGAAQSWQMD
                     NRGPTMIDGRFDFGFAVDWMRKDLGLVLDEARRNGAQLPVTALVDQFYAELQAEGGNR
                     ADTSSLIKRLKRKAPTGR"
     gene            complement(896..1528)
                     /locus_tag="VF308_01180"
     CDS             complement(896..1528)
                     /locus_tag="VF308_01180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HEX7435292.1"
                     /translation="MNRNIRRAWRATALSLVAGAALSACAPLLIGGALVGGSMVATDR
                     RTSGAQVEDEVIELKAGKRIRETLGERGQVSVTSYNRIVLITGIVTDAADKTAVEEAI
                     GRIENVQSVVNEVAVGIPRSITGRSSDALITTKVKASLIDAKDLFSNAIKVVTSQDVV
                     YLMGRVTEREATRAAEVARGVGGVQKVVRVFELISEAELANTQPKAPPKP"
     gene            complement(1525..2121)
                     /locus_tag="VF308_01185"
     CDS             complement(1525..2121)
                     /locus_tag="VF308_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007867672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008968 - D-sedoheptulose 7-phosphate
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoheptose isomerase"
                     /protein_id="HEX7435293.1"
                     /translation="MLEQRIQQQFFDSADLKYAAAEILSKPIADAVSALVGCITGGGK
                     VLACGNGGSASDAQHFAAEFVGRFERERPGLAAIALTTDTSVLTAIGNDYSFEVIFAK
                     QVQALGAPGDVLLAMSTSGNSANVLAAMAAARAKDMTVIALTGNTGGKVREQLTETDV
                     HICVPHERTARIQEVHLLVLHCLCDAVDLQLLGEQENT"
     gene            complement(2183..2525)
                     /locus_tag="VF308_01190"
                     /pseudo
     CDS             complement(2183..2525)
                     /locus_tag="VF308_01190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013899806.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
     gene            2527..3426
                     /gene="rsmI"
                     /locus_tag="VF308_01195"
     CDS             2527..3426
                     /gene="rsmI"
                     /locus_tag="VF308_01195"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011803874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEX7435294.1"
                     /translation="MNASLLLQAAADAAGAQHYPTGALYVVATPIGNRADFTLRAIHV
                     LALVDAIACEDTRHSSPLLREFGIDKPLLALHQHNEHEAAAAVLARLARGERVAYVSD
                     AGTPALSDPGAALVAAAQAAGYRTLPVPGPSSAIAALSVAGDAASSGFSFVGFLPTRG
                     GERAGALERLTANPGTVVLFEAPHRMVALAQELAERCAARKVTLCRELTKQFETVATM
                     AAAELPVWLGADPNRLRGEFVVVVHAAPAPLAPPEAEHDAMLRTLLAVLPLKQAVLVA
                     AELTGAPRNALYARALALKREVQ"
     gene            complement(3487..3828)
                     /locus_tag="VF308_01200"
     CDS             complement(3487..3828)
                     /locus_tag="VF308_01200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435295.1"
                     /translation="MSNFKTLIAGSALALATIGAFAQATSAPTMPRVDQREARQQARI
                     DQGVASGQLTARETNRLDKQQARIAGAESNAKADGVVTAKERRHLNRMQDRASKNIYH
                     QKHDAQVAAKP"
     gene            4022..>4738
                     /locus_tag="VF308_01205"
     CDS             4022..>4738
                     /locus_tag="VF308_01205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase modulator"
                     /protein_id="HEX7435296.1"
                     /translation="MISREPTIERLAVARALLLEPFGLTDRSLAKALQAIATHRIDDA
                     DLYFQYTRSEGWSLEEGIVKSGSFGIDQGVGVRAVAGEKTAFAYSDDISEAALMDAAQ
                     TVRTIAAAGQSRTVRMTSTPTIAGSRVLYAPMDPIATLDSTQKVALLEKVEKLARAGD
                     PRIVQVMAGLAGEYDVVLIARADGTMAADVRPLVRLSVTVIAEQKVEGVVRRESGNGG
                     GGGRFGFAYFADAMIESYVDA"
BASE COUNT          709 a         1629 c         1639 g          761 t
ORIGIN      
        1 gctcgtgatg tcgcattcct cggtctcggg gtgatgggct tcccgatggc cggacacctc
       61 gcctcggccg ggcaccgcgt cagcgtctac aaccggagcg cggcgaaggc ggcacggtgg
      121 gtcgcagaat acggcgccgc cagcgcggcc acgccgcggc tcgcggcgtc cggcgccgac
      181 atcgtctgcg cctgcgtcgg caacgacgac gacctgcgct cggtcgtgct cggcgaagac
      241 ggcgcctacg ccggcatgcg cagcggcgcg atcttcgtcg accacacgac cgcctcggcc
      301 gaggtcgcgc gcgagctggg tgcgcgggcc cgcgagcgcg gcctcgcgtt catcgacgcg
      361 ccggtctcgg gcggcaatct cggcgccgtc aacggcacct tgacggtgat gtgcggcggc
      421 ggcgcgacgg cgttcgaggc cgcgcgcccg atcgtcgcgg cgtacgcgaa agcggtgacg
      481 ctgctcggcg agaacggcgc cgggcagctt gccaagatgg tcaaccaggt cgcgatcgcc
      541 ggcctgttgc aaggcctggc cgaagcgatc gtgttcggcg agcgcgccgg gctcgacatg
      601 aaagccgtgc tcggcgtgat cggcaagggc gcggcacaga gctggcagat ggacaaccgc
      661 gggccgacga tgatcgacgg ccgcttcgac ttcggcttcg cggtcgactg gatgcgcaag
      721 gacctcggcc tcgtgctcga cgaagcacgc aggaacggcg cgcaactccc cgtcaccgcg
      781 ctcgtcgatc agttctatgc cgagctccag gccgaaggcg gcaatcgcgc cgacacgtcg
      841 agcctgatca agcgcctcaa acgcaaggcc ccaaccgggc gttgaacccc cgccgtcaag
      901 gcttcggcgg cgctttcggc tgtgtattgg ccagttcggc ttcgctgatg agctcaaaca
      961 cccgaaccac tttctgaacc ccgccgacgc cgcgcgccac ctcggcagcg cgcgtggcct
     1021 cgcgctcggt gacgcgtccc atcaggtaca cgacgtcttg cgacgtcacg actttgatcg
     1081 cgttcgaaaa cagatccttc gcgtcgatca ggctggcctt caccttggtc gtgatgagcg
     1141 catcgctgga acggccagtg atcgaacgcg ggatgccgac cgcgacttcg ttgacgaccg
     1201 actgcacgtt ctcgattcgc ccgatcgctt cttcgaccgc cgtcttgtcg gccgcatcgg
     1261 tcacgatgcc ggtgatcagg acgatccggt tgtagctcgt cacgctgacc tggccgcgct
     1321 cgccgagcgt ctcgcggatg cgcttgcccg ccttcaactc gatgacttcg tcttcgacct
     1381 gcgcgcccga agtgcgccga tcggtcgcga ccatcgagcc gccgacgagc gcgccgccga
     1441 tcagcagcgg cgcgcaggcg ctcagggcgg cgccggcgac gaggctgagt gccgtggcgc
     1501 gccaggcgcg ccggatgttt cggttcatgt gttttcctgt tcgcccagaa gttgcaggtc
     1561 gaccgcatcg cacaggcaat gcagcaccag caggtggact tcctggatgc gcgccgtgcg
     1621 ctcgtgcggc acgcagatgt ggacatcggt ttcggtcagc tgttcgcgga ccttgccacc
     1681 ggtattgccg gtgagtgcga tcacggtcat gtctttcgcg cgcgcggcgg ccatggcggc
     1741 gagcacgttg gccgagttgc cgctggtgct catcgcgagc agcacgtcgc cgggcgcgcc
     1801 gagcgcctgc acctgcttcg cgaagatcac ctcgaagctg tagtcgttgc cgatcgcggt
     1861 gaggaccgaa gtgtcggtgg tgagcgcgat cgccgcgaga ccgggccgct cgcgctcgaa
     1921 gcggccgacg aactcggcgg cgaaatgctg cgcgtcgctc gccgatccgc cattgccgca
     1981 ggccagcacc ttgccgccgc cggtgatgca gccgaccagc gcgctgaccg catcggcgat
     2041 cggcttgctg aggatttcgg cggcggcgta cttgagatcg gcgctgtcga agaattgctg
     2101 ctggatgcgt tgttcgagca tgatcacgga tgataagaca cgggctcgcg gccctggctc
     2161 cctcagcgat tgcccggtgc catcacgacg cgtcgaatgc cgcgcgcagc cattcgatgc
     2221 gctcgccctc gatggcgacc aagtcgaagc ggcagggcgg cggcgctttc aagccgagca
     2281 ggaaatgctg cgcggcgaaa acgaggctgc gtcgcttggc cggcccgacg cccgcacctc
     2341 gacgaacaag agcgtgccgt cgcgttcgcg caggatcagg tcgacctcgc cgccgcgcgc
     2401 accgggaccc cgcgcgcccc gataattgcg ccgcaccagc tgagcccgga ccccgccagg
     2461 tgggcgaggg cgcgggcctc ggcggcatcc cccacacctt ttgtcgtcag acccttcgtg
     2521 accacgctga acgcttcgtt gttgctgcag gccgcggcgg atgccgccgg cgcccagcac
     2581 taccccaccg gcgcactgta cgtggtggcc acgccgatcg gcaatcgcgc cgacttcacc
     2641 ctgcgcgcga tccatgtgct cgcgctcgtc gacgcgatcg cctgcgaaga cacgcgccac
     2701 agctcgccgt tgctgcgcga gttcggcatc gacaagcccc tgctcgcgct gcaccagcac
     2761 aacgagcacg aggcggccgc ggcggtcctg gcgcgcctcg cgcggggcga gcgagtggcc
     2821 tacgtcagcg acgccggcac gccggccctc agcgacccgg gcgcggcgtt ggtcgctgcg
     2881 gcccaggcag cagggtatcg aacgctgccc gtgccgggcc cgagcagcgc gatcgccgca
     2941 ctcagcgtcg ccggagacgc ggcgagcagc ggcttctcct tcgtcggctt cctgccgacc
     3001 cgcggcggcg agcgtgcggg ggcgctcgaa cggttgacag cgaatccggg cacggtggtg
     3061 ctgttcgaag cgccgcatcg catggtcgcg ctcgcgcagg aactggccga gcgatgcgcc
     3121 gcgcgaaagg tcacgctgtg ccgtgagttg accaagcagt tcgagacggt cgccacgatg
     3181 gcggcggcgg agctgcccgt ctggctcggt gccgatccga accggctgcg cggcgaattc
     3241 gtcgtcgtcg tgcatgccgc cccggcgccg ctcgcaccgc ctgaggccga gcacgatgcc
     3301 atgctgcgca cgctcctcgc ggtgctgccg ctcaagcagg ccgtgctggt cgccgccgag
     3361 ctgaccggcg cgccgcgcaa tgcgctctac gcgagagcgc tggcgctcaa gcgtgaagtc
     3421 caatagtgca aagccgagca agcaaacccc gcgaatccgt cgcggggttg cgagcgcgaa
     3481 gcgcgcttac ggcttggccg cgacttgcgc gtcgtgcttc tggtggtaga tgttcttgct
     3541 ggcgcggtcc tgcatgcgat tcaggtggcg ccgctccttg gcggtgacga cgccgtcggc
     3601 cttggcgttc gactcggcgc cggcgatgcg cgcctgctgc ttgtcgagcc gattggtttc
     3661 acgtgcggtc agctggcccg aggccacgcc ctggtcgatg cgcgcctgct gcctggcttc
     3721 gcgctggtcg actcggggca tcgtgggcgc gctggtggcc tgcgcgaacg cgccgatggt
     3781 tgcgagggcc agcgcggagc cggcgatgag ggtcttgaag ttcgacatgt tcctacctcg
     3841 gatgggttgt gttgatcgac tgagccggat tgcgggtccc gccccaccac aacgaggctt
     3901 cattgcccgg ggaagacgcc gggacgagta aagaactgtg gtggatttgt gagcaattcg
     3961 ccctgatcgc gcctgtgcgg cgccccactt ctacaatcgt cgcgcaccct caggacgaac
     4021 catgatttcc cgcgaaccga cgatcgagcg cttggccgtg gcccgcgctt tgctgctcga
     4081 gcctttcggt ctcaccgacc ggtcgctcgc caaggccctc caggccatcg cgacgcaccg
     4141 catcgacgac gccgacctgt atttccaata tacgcgcagc gaaggctgga gcctcgagga
     4201 aggcatcgtc aagagcggca gcttcggcat cgaccagggt gtgggcgtgc gcgccgtcgc
     4261 cggcgagaag accgccttcg cctattccga cgacatttcc gaggccgcgc tgatggatgc
     4321 ggcccagacc gtgcgcacga tcgccgcggc cgggcagagc cgcaccgtgc gcatgacgag
     4381 cacgccgacg atagccggca gccgcgtgct ctacgcgccg atggatccga tcgcgacgct
     4441 cgacagcacc cagaaggtcg cgctgctcga gaaagtcgag aagctcgcgc gggccgggga
     4501 tccgcgcatc gtccaggtga tggcgggcct ggccggcgaa tacgacgtgg tgctgatcgc
     4561 gcgcgccgac ggcacgatgg cggccgacgt caggccgctg gtgcgccttt ccgtcaccgt
     4621 cattgccgaa caaaaggtcg aaggggtggt gcgtcgcgaa tcgggcaatg gcggcggcgg
     4681 cgggcgcttc ggcttcgcct acttcgccga cgcgatgatc gaaagctatg tcgacgcc
//
LOCUS       DASVHM010000065         1628 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1230285, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000065 DASVHM010000000
VERSION     DASVHM010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1230285"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..1214
                     /locus_tag="VF308_01210"
     CDS             3..1214
                     /locus_tag="VF308_01210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018314261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006835 - dicarboxylic acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HEX7435297.1"
                     /translation="MIAPIIFCTVVVGIAGMEDMKKVGKTGGLALLYFEIVSSIALIV
                     GLVIINIVQPGAGMNVDPNALDTKSVAAYTGPGKMQGTVEFLLNIIPNTVVDAFAKGE
                     ILQVLLFSVLFGFALHKFGGRGTLVFDVIEKTSHVLFSIVGIIMKLAPIGAFGAMAFT
                     IGKYGVGSLLSLGKLMGTFYATCLFFIFIVLGLIARIHGFAIWKFVRYIKEELLIVLG
                     TSSSESVLPRMMAKMENLGAKKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNTQ
                     MTIGQQVTLLAVLLLTSKGAAGVTGSGFIVLAATLSAVGHVPVAGLALILGIDRFMSE
                     ARALTNLIGNGVATVVVAKWTGDLDTERMRRVLDGETAEESEEPEAVLDRRPVHIAAS
                     GTSPVPAAAAR"
     gene            1249..>1628
                     /locus_tag="VF308_01215"
     CDS             1249..>1628
                     /locus_tag="VF308_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013958638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7435298.1"
                     /translation="MRSPETAHRIVIVGGGAGGLELATRLGDTLGKRGRADVTLIDKN
                     RTHVWKPKLHEIASGSMDLSAHEVDYLAQAHWHHFRYRVGEMTALDRDRREVRVAPHV
                     DDEGKEVTPERTFGYDTLVLAIGSL"
BASE COUNT          272 a          565 c          512 g          279 t
ORIGIN      
        1 tgatcatcgc gccgatcatc ttctgcaccg tcgtcgtcgg catcgccggc atggaggaca
       61 tgaagaaggt cggcaagacc ggcggcctgg cgctgctcta cttcgagatc gtcagctcga
      121 tcgcgctgat cgtcggcctg gtgatcatca atatcgtcca gcccggcgcc ggcatgaacg
      181 tcgacccgaa cgcgctcgac accaagagcg tcgccgccta caccggcccc ggcaagatgc
      241 agggcaccgt cgaattcctg ctcaacatca tccccaacac cgtcgtcgac gcgttcgcca
      301 agggcgagat cctgcaggtg ctgctgttct cggtgctgtt cggctttgcc ctgcacaagt
      361 tcggcggccg cggcacgctc gtcttcgacg tgatcgaaaa gacctcgcac gtgctgttct
      421 cgatcgtcgg catcatcatg aagctggcgc cgatcggcgc cttcggcgcg atggcgttca
      481 cgatcggcaa gtacggcgtc ggctcgctgc tctcgctcgg caagctcatg ggaacgttct
      541 acgcgacgtg cctcttcttc attttcatcg tcctcggcct gatcgcccgc atccatggct
      601 tcgcgatctg gaagttcgtc aggtacatca aggaagagct gctgatcgtc ctcggcacgt
      661 cgagctcgga gtcggtgctg ccgcggatga tggccaagat ggaaaacctc ggcgccaaga
      721 agtcggtggt cggcctggtg atcccgaccg gctactcgtt caacctcgac ggcacctcta
      781 tctacctgac gatggccgcc gtcttcatcg cccaggcgac caacacgcag atgacgatcg
      841 gccagcaggt cacgctgctc gcggtgctgc tgctgacgtc caagggcgcc gccggcgtca
      901 ccggcagcgg cttcatcgtc ctcgcggcga ccctctcggc ggtcggccac gtgccggtcg
      961 ccgggctggc gctgatcctc ggcatcgacc gcttcatgtc ggaggcgcgc gcgctcacca
     1021 acctgatcgg caacggcgtc gcgacggtcg tcgtcgccaa gtggaccggc gacctcgaca
     1081 ccgagcgcat gcgtcgggtc ctcgacggcg agactgccga ggagtccgag gagccggaag
     1141 cggtgctcga ccgccggccg gtgcacatcg ccgcctcggg cacgtcaccg gtcccggcgg
     1201 cagcagcacg ctgattccgc gtcgatccga gcgttttcga tccgcaccat gcgcagcccc
     1261 gaaaccgccc accgcatcgt catcgtcggc ggcggcgcgg gcggtctcga gctggcgacg
     1321 cgtctgggtg acacactcgg caagcgcggc cgggccgacg tcacgctgat cgacaagaac
     1381 cgcacccacg tctggaagcc gaagctgcac gagatcgcct ccggcagcat ggacctgagc
     1441 gcgcatgagg tcgactacct ggcacaggcg cactggcacc acttccgata tcgggttggc
     1501 gaaatgaccg cgctcgaccg cgatcgccgc gaggtgcgcg tcgccccgca cgtcgacgac
     1561 gagggcaagg aggtgactcc cgagcgcacc ttcggctacg acacgctggt gctagcaatc
     1621 ggcagcct
//
LOCUS       DASVHM010000066         2300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_149146, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000066 DASVHM010000000
VERSION     DASVHM010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2300
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149146"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2300
                     /gene="rpoB"
                     /locus_tag="VF308_01220"
     CDS             <1..>2300
                     /gene="rpoB"
                     /locus_tag="VF308_01220"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEX7435299.1"
                     /translation="EKDKRITARHVRTIEQSETTFISVPEDYLLGRMLARNVVDAETG
                     EILAKANDELTDTLLKKLRLAGVKEIPALYTNELDEGAYISQTLAADETADQLAARVA
                     IYRMMRPGEPPTEDAVEALFHRLFYSADTYDLSRVGRMKFNARVGRDTPEGSMTLSNE
                     DILDVVKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGLARIEKAVKERLGQ
                     AETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALGPGGLT
                     RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETPYRRVADG
                     KVTNQIDYLSAIEEGKYVIAQASATLDAEGKLIDELVSARDNGESVLTSAERIQYMDV
                     APTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPTLRPEKALVGTGVERVAAKDSG
                     TVVAAKRGGVVDYVDTNRIVIRVNDKETVSGEVGVDIYNLIKYQRSNQNTNIHQRPIV
                     KRGDTVDAEDIIADGASTDIGELALGQNMLVGFMPWNGYNFEDSILISERVIADDRYT
                     SIHIEELVVMARDTKLGAEEITRDIPNLSEQQLGRLDESGIVYVGAEVNPGDTLVGKV
                     TPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTNGTVIDVQVFTREGIPRDKRA
                     QQIIDDELKRYRLDLNDQLRIVEADAFDRIEKLLAGKPANGGPQKIAKGTLIDKAYLD
                     SVEKYHWFDIRPADEDLANQLESIKN"
BASE COUNT          477 a          798 c          719 g          306 t
ORIGIN      
        1 tcgagaagga caagcgcatc accgcgcgcc acgtgcgcac gatcgagcag tcggagacga
       61 ccttcatcag cgttcccgag gattacctcc tcggccgcat gctggccaga aacgtcgtcg
      121 atgccgagac cggcgagatc ctggccaagg ccaacgacga actgaccgac acgctgctga
      181 agaaactgcg cctggccggc gtcaaggaaa tcccggcgct ctacaccaac gagctcgacg
      241 aaggcgccta catctcgcag acgctggccg ctgacgagac cgccgaccag ctcgccgccc
      301 gagtcgcgat ctaccgcatg atgcggccgg gcgagccgcc gaccgaagac gccgtcgagg
      361 cgctcttcca ccgcctcttc tacagcgccg acacctacga cctgtcgcgc gtcggccgga
      421 tgaagttcaa cgcccgcgtc ggccgcgaca cgccggaagg ctcgatgacg ctgtcgaacg
      481 aggacatcct cgacgtcgtc aagatcctgg tcgagctgcg caacggtcgc ggcgaagtcg
      541 acgacatcga ccacctgggc aaccggcgcg tgcgctgcgt cggcgaactg gccgagaacc
      601 agtaccgttc gggcctggcc cggatcgaga aggccgtcaa ggaacgtctc ggccaggccg
      661 agaccgaggc gctgatgccg cacgacctga tcaactccaa gccgatttcc gcggcgctga
      721 aggagttctt cggggcaagc cagctcagcc agttcatgga ccagaccaat ccgctctcgg
      781 agatcacgca caagcggcgc gtctcggccc tgggcccggg cggtctgacg cgcgagcgcg
      841 ccggcttcga ggtgcgcgac gtgcacccga cgcactacgg ccgggtctgc ccgatcgaga
      901 cgccggaagg tccgaacatc ggcctgatca actcgctcgc cctctacgcg cagctcaacg
      961 aatatggctt cctcgagacg ccgtaccggc gcgtggccga cggcaaggtg acgaaccaaa
     1021 tcgactacct gtcggccatc gaggaaggca aatacgtgat cgcgcaggcg agcgcgacgc
     1081 tcgatgccga aggcaagctg atcgacgagc tcgtctcggc gcgcgacaac ggcgaatcgg
     1141 tgctgacctc ggccgagcgc atccagtaca tggacgtcgc gccgacgcag atcgtctcgg
     1201 tcgccgcctc gctcgtgccg ttcctcgagc acgacgacgc gaaccgcgcg ctgatgggcg
     1261 cgaacatgca gcgccaggcc gtgccgacgc tgcgccccga gaaggcgctc gtcggaaccg
     1321 gcgtcgaacg cgtggccgcg aaggactcgg gcaccgtcgt cgccgccaag cgcggcggcg
     1381 tggtcgacta tgtcgatacg aaccgcatcg tgatccgcgt caacgacaag gaaacggtgt
     1441 cgggcgaagt cggcgtcgac atctacaacc tgatcaagta ccagcgttcc aaccagaaca
     1501 ccaacatcca ccagcgcccg atcgtcaagc gcggcgacac ggtcgacgcc gaggacatca
     1561 tcgccgacgg cgcctcgacc gacatcggcg aactcgcgct cggccagaac atgctggtcg
     1621 gcttcatgcc ctggaacggc tacaacttcg aagactcgat cctgatcagc gagcgcgtca
     1681 tcgccgacga ccgctacacc tcgatccaca tcgaggagct ggtcgtgatg gcgcgcgaca
     1741 ccaagctcgg cgccgaggaa atcacccgcg acatcccgaa cctgtcggag cagcagcttg
     1801 ggcggctcga cgaatcgggc atcgtctacg tgggcgccga agtgaacccg ggcgacaccc
     1861 tcgtcggcaa ggtcacgccg aagggcgaga ccacgctgac gccggaagaa aagctcctgc
     1921 gcgcgatctt cggcgagaag gcttcggacg tgaaggacac gtcgctgcgc gtcgaccagg
     1981 gcaccaacgg caccgtgatc gacgtccagg tcttcacccg cgaaggcatt ccgcgcgaca
     2041 agcgggcgca gcagatcatc gacgacgagc tcaagcgcta ccgcctcgac ctgaacgacc
     2101 agttgcgcat cgtcgaggct gacgcgttcg accggatcga gaagctcctg gccggcaagc
     2161 ccgccaacgg cggtccgcag aagatcgcca agggcacgct gatcgacaag gcctacctcg
     2221 acagcgtcga gaagtaccac tggttcgaca tccgcccggc cgacgaggac ctcgccaacc
     2281 agctcgagtc gatcaagaac
//
LOCUS       DASVHM010000067         2736 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1230521, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000067 DASVHM010000000
VERSION     DASVHM010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2736
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1230521"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..627
                     /locus_tag="VF308_01225"
     CDS             <1..627
                     /locus_tag="VF308_01225"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005672195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEX7435300.1"
                     /translation="IERVMAESRIPMIKHLDGVCHVYIDDRADLDMAIRIADNAKTQR
                     YGTCNTMETLLVAEGVAAKVLPPLAKIYFDKGVELRGDEQSRKLVPAIKPASEDDWYA
                     EYLAPILAVRVVKDLDQAMEHIAKYGSAHTDAIVTEDEARAQRFLREVDSSSVMVNAS
                     TRFADGFEYGLGAEVGISTDKLHARGPVGLEGLTSQKYVVLGGGQIRT"
     gene            686..1339
                     /gene="nadD"
                     /locus_tag="VF308_01230"
     CDS             686..1339
                     /gene="nadD"
                     /locus_tag="VF308_01230"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: protein motif:HMM:NF000839.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HEX7435301.1"
                     /translation="MNAFNLNVCGILGGTFDPVHLGHVALAEAALAGLPLGEVLWLPS
                     GSPGHRAPPVASARDRLAMLRLATAGNPRYRIDDGELARSEPTYTVHALTRLRAQIGN
                     EQPLALLLGSDSFLSLPTWLRWRELFDLAHIAVASRSGHLPSDGGPAPELSAEIARRS
                     ARPEQLAASAAGRIVRFDMPPMDISASAIRAQLAAGQDTRQLLPAAILAYIEAQHLY"
     gene            1360..1746
                     /gene="rsfS"
                     /locus_tag="VF308_01235"
     CDS             1360..1746
                     /gene="rsfS"
                     /locus_tag="VF308_01235"
                     /inference="COORDINATES: protein motif:HMM:TIGR00090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEX7435302.1"
                     /translation="MDIRKMEKAVVAALEDIKARDIVVLKVAHLSPLFERMIIASADS
                     TRRVKALADNVQEKLKALGEQVLSVEGEQNGEWVLVDLGAIVVHVMQPTIRQYYNLEE
                     LWDQPEVKPKRPRARKKAAESQPAAR"
     gene            1766..2236
                     /gene="rlmH"
                     /locus_tag="VF308_01240"
     CDS             1766..2236
                     /gene="rlmH"
                     /locus_tag="VF308_01240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011352746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEX7435303.1"
                     /translation="MKLVVVAVGTRMPSWVVEGYRAYAKRMPPGTALELIEIKAEART
                     SGKTVAQMLAAEAQRIRAALPKGGRVVALDERGKDLSTTGLAVQFEAWMQERGPVVFL
                     IGGADGLDADLKKTAAMQLRLSGMTLPHGLARVLLAEQLYRALSIIGGHPYHRE"
     gene            2242..>2736
                     /locus_tag="VF308_01245"
     CDS             2242..>2736
                     /locus_tag="VF308_01245"
                     /inference="COORDINATES: protein motif:HMM:TIGR00172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase"
                     /protein_id="HEX7435304.1"
                     /translation="MAGQSYFYLASRSPRRRELLNQIGVDHQVLTQRIKAERGADVNE
                     DPLPGETPRDYVLRVCRDKAENGWMRVVQRKLPLRGVLAADTTVCIGDEILRIPADAA
                     EAADFLGRLSGREHEVLTAVAFKFGERMETELSATAVRFRALEPAEIERYVASGEPMD
                     KAGAY"
BASE COUNT          487 a          932 c          926 g          391 t
ORIGIN      
        1 atcgagcgcg tcatggccga atcgcgcatc ccgatgatca agcacctcga cggggtgtgc
       61 cacgtgtata tcgacgatcg cgcggacctg gacatggcga tacgcatcgc cgacaacgcc
      121 aagacccagc gctacggcac ctgcaacacc atggaaacgc tgctggtcgc ggaaggcgtg
      181 gcggcgaagg tgctgccgcc gctggcgaag atctatttcg acaagggcgt ggagctgcgc
      241 ggcgacgagc aatcgcgaaa actcgtgccc gcgatcaagc ccgcgagcga ggacgactgg
      301 tacgcggaat atctcgcgcc tatcctcgcg gtgcgcgtgg tgaaagacct cgaccaggcg
      361 atggagcaca tcgccaagta cggctcggcg cacaccgacg ccatcgtcac cgaggacgag
      421 gcgcgcgcgc agcgtttcct gcgcgaggtc gattcgagct cggtgatggt caacgcctcg
      481 acgcgctttg ccgacgggtt cgagtacggc ctgggcgcgg aagtgggcat ttccaccgac
      541 aagctgcacg cgcgcgggcc ggtggggctg gaaggtctca cctcgcagaa atacgtcgtg
      601 ctcggcggcg ggcaaatcag gacgtgatgc ggcgcatcgc cgatctgccc gtcggcgccg
      661 cacgcaaact ctgaacgcca gcggcttgaa cgccttcaac ttgaacgtct gcggcatcct
      721 cggcggcacc ttcgatccgg ttcacctggg ccatgtcgcg ctggccgaag cggcgctcgc
      781 gggactgccg ctcggcgaag tcctgtggct gccctcgggc agccccggac atcgcgcgcc
      841 gcccgtcgcg agcgcgcgcg accgcctggc gatgctcagg ctcgccaccg ccggcaatcc
      901 gcgctatcgc atcgacgacg gcgagctcgc ccggagcgag cccacctaca ccgtgcacgc
      961 gctcacgcgg ctgcgcgcgc agatcggcaa cgagcagccg ctcgcgctgc tgctgggcag
     1021 cgattccttc ctcagcctgc cgacctggct gcgctggcgc gagctgttcg acctcgcgca
     1081 tatcgccgtc gcgagccgct cgggccatct cccgagcgac ggcgggccgg cgcccgaact
     1141 ctcggccgag atcgcgcgcc gctcggcgcg gcccgaacag ctcgccgcga gcgcggcggg
     1201 caggatcgtg cgcttcgaca tgccgccgat ggacatctcg gcctcggcca tccgcgcaca
     1261 gcttgccgcg gggcaggaca cgcgccagtt gctccccgcc gcaattctcg cttatattga
     1321 ggcacaacat ctatactgaa aggagacgct caaaccctga tggatatccg taaaatggaa
     1381 aaagcggtgg tcgccgcact cgaagacatc aaggcccgcg acatcgtcgt gctcaaagtc
     1441 gcccatctct cgcccttgtt cgagcgcatg atcatcgcca gcgccgactc gacgcgccgg
     1501 gtcaaggcgc tcgccgacaa cgtgcaggaa aagctgaagg cgctcggcga gcaggtgctc
     1561 tcggtggaag gggagcagaa cggcgagtgg gtcctggtcg acctcggcgc gatcgtggtg
     1621 cacgtgatgc agcccaccat ccgccagtac tacaacctgg aagagctgtg ggaccagccc
     1681 gaagtgaagc cgaaacggcc gcgcgcgcgc aagaaggcgg cagaatcgca gccggccgcc
     1741 aggtgagaac gcgcccaagc ccccgatgaa gctcgtcgtg gtcgccgtcg gcacgcgcat
     1801 gccgtcctgg gtggtcgagg gctaccgcgc gtacgcgaag cgcatgccgc cgggcacggc
     1861 gctcgagttg atcgagatca aagccgaagc gcgcactagc ggaaaaaccg tggcgcaaat
     1921 gcttgccgcc gaagcccaac gcatccgcgc ggcgctgccc aagggcggcc gcgtggtcgc
     1981 gctggacgag cgcggcaagg atctgagcac gaccggcctc gcggtgcagt tcgaggcctg
     2041 gatgcaggaa cgcggaccgg tggtgtttct gatcggcggc gcggacggcc tggacgctga
     2101 cttgaaaaag accgccgcga tgcagttgcg cctgtcgggc atgaccctgc cgcacgggct
     2161 cgcgcgggtg ctgctggccg agcaactgta tcgcgcgctg agcatcatcg gcggccaccc
     2221 gtaccaccgc gagtgagcat agtggccggc caatcctact tctacctggc ctcgcgcagc
     2281 ccgcgccggc gcgaactgct gaaccagatc ggcgtcgatc accaggtgct gacccagcgc
     2341 atcaaggcgg agcgcggcgc cgacgtgaac gaagatccgc ttcccgggga aacgccgcgc
     2401 gactatgtgc tgcgcgtgtg ccgcgacaag gccgagaacg gctggatgcg cgtcgtccag
     2461 cgcaagctgc cgctgcgcgg cgtgctggcc gccgacacca ccgtgtgcat cggcgacgaa
     2521 atcctccgca tcccggcgga tgcggccgag gccgccgatt ttctcgggcg cctatcgggc
     2581 cgggagcacg aggtgctcac ggccgtcgcg ttcaaattcg gcgagcgcat ggagaccgag
     2641 ttgtcggcga ccgcagtgcg ctttcgcgcg ctcgaaccgg ccgagatcga gcgttacgta
     2701 gccagcggcg agcccatgga caaagccggc gcctac
//
LOCUS       DASVHM010000068         5669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_4381, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000068 DASVHM010000000
VERSION     DASVHM010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5669
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4381"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..711
                     /locus_tag="VF308_01250"
     CDS             <1..711
                     /locus_tag="VF308_01250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase"
                     /protein_id="HEX7435305.1"
                     /translation="AGVLDGVAGALHVTLDGNEQYEDVESVVELWSAMEAEPALHKLC
                     AATLFIEQPIKRAVALSRSIAPLARFRPVIIDESDGELDAFVRARALDYGGVSSKDCK
                     GFYKSIVNLARCRLWNAEAGGGAFFLSGEDLTTQAGLAVQQDLALVSLLGLADVERNG
                     HHFVDGFASRPQGESLAFLQAHPDVYHEADRRVRLTIEGGRIALGSLECPGFGSAVVP
                     DLSTTAPMPKADWPPPQP"
     gene            738..1475
                     /locus_tag="VF308_01255"
     CDS             738..1475
                     /locus_tag="VF308_01255"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX7435306.1"
                     /translation="MDAIDLAFYRHQGHLTINGVFGAAETDALIADIEAWGESFLAEL
                     PAAQRVWYVDGGVKARTVLRKLDNPHAHRPALQAIACDPRLVALVEQVLGTGVSVYFS
                     QVFFKAPEGGGPKPAHQDNFYFGPTDIEGVVTAWIALDDATLENGCLYFGEGTNQGPV
                     YGHIAPPDEPFNLQLPLTILEKQPMAPAPVRKGGVSFHHGNTFHQSGPNHSSRWRRAC
                     ALHYVRNGVEFATPALPYDHSLKMRVT"
     gene            complement(1806..2573)
                     /locus_tag="VF308_01260"
     CDS             complement(1806..2573)
                     /locus_tag="VF308_01260"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017523442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435307.1"
                     /translation="MPTQPFIHLAGVAKTYGKGAKAHLAISDATFDVMPGELACLVGP
                     SGCGKSTLLKILAGLHPHDAGTVKIGSDAVPFDPAKDIGMVFQQPLLLKWRTIIDNVL
                     LPAEILGLPAKESRERARDLLALVGLKGAEDKRPYELSGGMQQRAAIARALVHDPKLV
                     LMDEPFGALDALTREKMNLELLRIWKEAGKTILFVTHGISEAVFLGTRVVVFTAGPAR
                     MADDFAIDLPHPRTLDMKTQEAFGVYTRRIYKLLGMD"
     gene            complement(2581..3348)
                     /locus_tag="VF308_01265"
     CDS             complement(2581..3348)
                     /locus_tag="VF308_01265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017523446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7435308.1"
                     /translation="MPTLDDRWTRTLMAVVSHLALLLVWYLFVKFGDVPKFVMPSPVD
                     TAKTILAGNYNWWTNAAVTATEIFGGYAFALVVGVLLALAFTWSKPLEALMMPLLVSL
                     NMIPKVALGPLIIVWFKYGVVPNMMIAFSICVFPILLTTVRGLREVEPDLLDLVRTLR
                     GSRWQVFTKIQLPGALPYIFSGMKVAAILAVAGAIVGEFLGSDKGLGYLMLQVQVTLD
                     TAAMFMAVLLITLIGMLLYGAVLALERAFVVPDARVS"
     gene            3479..4477
                     /locus_tag="VF308_01270"
     CDS             3479..4477
                     /locus_tag="VF308_01270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017523449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435309.1"
                     /translation="MPLFQRLALAAGFTVASLVSAPAFAQTKIDFILNWVPGGDHAPY
                     YYAKKMGWYKDAGIDLNLEPGKGSAVAVQKVAAGANPVGLADMPNALTLRGKGADTVG
                     VFNVYANSPQGLYWLKSSGIKTVKDLAGKKIGNPAGDGARTIWPALAKANGMDANSVT
                     WVNIDANSKLAALKAKSIDATTSFYNIHHIFQRELGDDMGFVAWKDAGLNTYGNTVIV
                     NGDYLKKNKPVIAAFVKVTQRAFAACVAAPNPCVQALIDANGALQFDNELQNWKLVEV
                     LMSDKYSKGTALGILDDARMASDYDLVKTYIGLDAPYDVKTAYTNEFLDRSIKMTK"
     gene            4488..5501
                     /locus_tag="VF308_01275"
     CDS             4488..5501
                     /locus_tag="VF308_01275"
                     /inference="COORDINATES: protein motif:HMM:NF013847.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-independent methionine synthase II
                     family protein"
                     /protein_id="HEX7435310.1"
                     /translation="MSSVPRIRTTVVGSYPVPEWLVAAPSEQALIDATRVVIATQEAA
                     GVDVVCDGELYRFDINHPETNGMIEYFVRPMQGVRLQMTFDEVMAYRSLPGMRFRTRP
                     PGVVDGAISSGTLDLPLACQRAQALATKTFKFTVTGPHMLAKTLLNRHYADTPALAHA
                     IADVLAEQVKHLDADIVQLDEANLPGHPEEWEWAASALNRVLDAVKTTPAVHLCFGNY
                     GGQSVQHGTWEQLMRYLNALHADHVVLECAHRPPEELAVFKDLKPEIGFGLGVVDIKA
                     TEIESADAIARAIERAENLLGAGRVRYIHPDCGFWMLKRPIADAKIRALAQGRDLYEG
                     RAH"
BASE COUNT          963 a         1966 c         1912 g          828 t
ORIGIN      
        1 gccggcgtcc tcgacggcgt cgccggggcg ctgcacgtca ccctcgacgg caacgagcag
       61 tacgaggacg tcgagtcggt cgtcgagctg tggagcgcga tggaggccga gccggcgctg
      121 cacaagctct gcgccgcgac gctcttcatc gagcagccga tcaagcgcgc ggtcgcgctc
      181 tcgcgcagca tcgccccgct ggcacgcttt cggccggtga tcatcgacga gtccgacggc
      241 gagctcgacg ctttcgttcg cgcccgcgcg ctcgactacg gcggcgtctc gtcgaaggac
      301 tgcaagggct tctacaagtc gatcgtcaac ctggcgcgct gccgcctctg gaacgccgaa
      361 gccggcggcg gcgcgttctt cctctcgggc gaagacctga cgacgcaagc cggccttgcc
      421 gtgcagcagg acctcgccct cgtctcgctg ctcggcctgg ccgacgtcga gcgcaacggg
      481 catcacttcg tcgatggctt cgccagccgg ccgcagggcg agagcctggc gttcctgcag
      541 gcgcaccccg acgtctatca cgaggccgac cggcgcgttc ggctgaccat cgagggcggc
      601 cgcatcgcgc tcggctcgct cgagtgcccg ggcttcggca gtgcggtcgt ccccgacctg
      661 tcgacgaccg cgccgatgcc caaggcggac tggccgccgc cgcagccttg atcgcggcgc
      721 ccttccggag cttcgcgatg gacgcgatcg acctcgcctt ctaccgccat cagggccacc
      781 tcacgatcaa cggcgtgttc ggcgcggccg agaccgacgc gctcatcgcc gacatcgagg
      841 cctggggcga gagcttcctc gccgagctgc cggccgcgca gcgcgtctgg tacgtcgacg
      901 gcggcgtgaa ggcgcgcacg gtgctgcgaa agctcgacaa cccgcacgcg caccggcccg
      961 cgctgcaggc gatcgcgtgc gatccgcgcc tggtcgcgct cgtcgagcag gtcctcggca
     1021 ccggcgtctc ggtctacttc agccaggtct tcttcaaggc accggaaggc ggcggcccga
     1081 agccggcgca ccaggacaac ttctatttcg ggcccaccga catcgaaggc gtcgtcaccg
     1141 cctggatcgc gctcgacgac gcgacgctcg agaacggctg cctctacttc ggcgagggga
     1201 cgaaccaggg gccggtctac ggccacatcg cgccgccgga cgagccgttc aacctgcagt
     1261 tgcccttgac gattctcgag aagcagccga tggcgccggc gccggtgcga aagggcgggg
     1321 tgagctttca tcacggcaat acctttcatc agtcggggcc gaaccacagt agccgctggc
     1381 gccgcgcctg cgcgctgcac tacgtcagga acggcgtcga gttcgcgacg ccggcgttgc
     1441 cgtacgacca ctcgctgaag atgcgcgtca cctgaaaggc cgggtggtgc acgagggcgg
     1501 cgagcggcgg gtatgccccg acccgccttc gcccgaggcg gtgatcacgg catcgagcgg
     1561 gttcgtcgcg acacgtcgct cggcgacggc cgccgctgcg aagactctcg ggtcacaccc
     1621 accactcccc gcccccgcac cgcgcgatgc aaccaagtcg cacggcgcgc ctcgggttct
     1681 attgatgcca gagccgggac ggcgagtggt gggtgtggtt cgggcggcgt ccgggccaca
     1741 tccgccgctc accggccccg tgccactcgg cgcctgccac gaatggatca agccgcgacc
     1801 gcagctcaat ccatcccgag cagcttgtag atgcggcggg tgtagacgcc gaacgcttct
     1861 tgcgtcttca tgtcgagcgt gcgcggatgc ggcagatcga tcgcgaagtc gtcggccatg
     1921 cgagccggcc cggcggtgaa gacgacgacg cgcgtgccga ggaacaccgc ttccgagatg
     1981 ccgtgggtga cgaacaggat cgtcttgccg gcttccttcc agatgcgcag cagctcgagg
     2041 ttcatcttct cgcgcgtcag cgcgtcgagg gcgccgaacg gctcgtccat gaggacgagc
     2101 ttggggtcgt ggacgagggc gcgcgcgatc gccgcgcgct gctgcatgcc gcccgagagc
     2161 tcgtaggggc gcttgtcctc ggcgcctttg aggccgacga gcgcgagcag gtcgcgcgct
     2221 cgctcgcggc tttccttcgc cggcaggccg aggatctcgg ccggcaggag gacgttgtcg
     2281 atgatggtgc gccacttcag caggagcggc tgctggaaca ccatgccgat gtccttggcc
     2341 ggatcgaacg gcaccgcgtc ggagccgatc ttgaccgtgc cggcgtcgtg cgggtgcagg
     2401 ccggcgagga tcttgaggag cgtgctcttg ccgcagcccg acgggccgac gaggcaggcg
     2461 agctcgcccg gcatgacgtc gaaggtcgcg tcggagatcg cgaggtgcgc cttggcgccc
     2521 ttgccgtagg tcttggcgac gccggcgaga tggatgaagg gttgcgtcgg catctgcggt
     2581 tcagctcact cgcgcgtcgg gaacgacgaa ggcgcgctcg agggcgagga cggctccgta
     2641 gagcagcatg ccgatcagcg tgatcagcag cacggccatg aacatcgccg ccgtgtcgag
     2701 cgtcacctgc acctgcagca tgaggtagcc gagccctttg tcggagccga ggaattcgcc
     2761 gacgatcgcg ccggcgacgg cgaggatcgc cgccaccttc atccccgaga agatgtacgg
     2821 cagcgcgccc ggcagctgga tcttggtgaa cacctgccag cgcgaaccgc ggagcgttcg
     2881 caccaggtcg agcaggtcgg gttcgacctc gcgcaggccg cgcaccgtcg tcagcaggat
     2941 cgggaagacg cagatcgaga acgcgatcat catgttcggc acgacgccgt acttgaacca
     3001 gacgatgatc agcgggccga gcgcgacctt cgggatcatg ttgaggctca cgagcagcgg
     3061 catcatcagc gcctcgagcg gcttcgacca ggtgaaggcg agcgcgagca ggacgccgac
     3121 gacgagcgcg aacgcgtagc cgccgaagat ctcggtcgcc gtcaccgcgg cgttggtcca
     3181 ccagttgtag ttgccggcga ggatcgtctt cgcggtgtcg accggcgacg gcatgacgaa
     3241 cttcggcacg tcgccgaact tcacgaagag ataccagacg agcaacagcg ccagatgcga
     3301 gaccaccgcc atgagcgttc gcgtccagcg gtcgtcgagc gtgggcatca ggggtcgagg
     3361 tggcgtgcgt cgagcgggcc gatgataggt ccgcacctcg gggtcaatgc tctcctcggc
     3421 cgaggggccg gttgctagac tcgtcgcgac ccgcagccgg gaccctccag gagacgacat
     3481 gccgctgttc caacgcctcg cccttgccgc cggcttcact gtcgcgagcc tcgtctcggc
     3541 gccggccttc gcgcagacga agatcgattt catcctcaac tgggtgcccg gcggcgacca
     3601 cgcgccttac tactacgcca agaagatggg ctggtacaag gacgccggca tcgacctcaa
     3661 cctcgagccc ggcaagggct cggcggtcgc ggtgcaaaag gtcgcggccg gcgccaaccc
     3721 ggtcggcctc gccgacatgc cgaacgcgct caccctgcgc ggcaagggcg ccgacacggt
     3781 cggcgtgttc aacgtctacg ccaattcgcc gcaggggctc tactggctga agagctcggg
     3841 aatcaagacg gtgaaggacc tcgccggcaa gaagatcggc aaccccgccg gcgacggcgc
     3901 gcggacgatc tggccggcgc tcgccaaggc caacggcatg gatgccaact cggtgacctg
     3961 ggtcaacatc gacgccaact ccaagctcgc cgcgctgaag gcgaagtcga tcgacgcgac
     4021 gacctcgttc tacaacatcc accacatctt ccagcgcgag ctcggcgacg acatgggctt
     4081 cgtcgcctgg aaggacgcgg gcctgaacac ctacggcaac acggtgatcg tcaacggcga
     4141 ctacctgaag aagaacaagc cggtgatcgc cgccttcgtc aaggtgacac agcgcgcgtt
     4201 cgccgcctgc gtcgcggcgc ccaacccgtg cgtgcaggcg ctgatcgacg ccaacggcgc
     4261 gctccagttc gacaacgagc tgcagaactg gaagctggtc gaggtgctga tgagcgacaa
     4321 gtactcgaag ggcaccgcgc tcggcatcct cgacgatgcg cgcatggcct ctgactacga
     4381 cctcgtcaag acctacatcg gcctcgacgc gccgtacgac gtcaagactg cctacaccaa
     4441 cgaattcctc gaccgctcga tcaagatgac gaagtgaggc gggctcggtg agcagcgtgc
     4501 cgcgcatccg caccaccgtc gtcggctcgt acccggtgcc ggagtggctg gtcgcggcgc
     4561 cgtcggagca ggcgctgatc gacgcgaccc gcgtcgtcat cgcgacgcag gaagcggccg
     4621 gcgtcgacgt cgtctgcgac ggtgagctgt accgcttcga catcaatcat cccgagacca
     4681 acgggatgat cgagtacttc gtccggccga tgcagggcgt acgcttgcag atgaccttcg
     4741 acgaggtgat ggcgtaccgg tcgctgccgg gaatgcgctt tcgcacccgc ccgccagggg
     4801 tcgtcgacgg cgcgatctcg agcggcacgc tcgacctgcc gctcgcctgc cagcgcgccc
     4861 aggcgctggc gacgaagacc ttcaagttca ccgtcaccgg cccgcacatg ctcgccaaga
     4921 cgctgctcaa ccgccactac gccgacacgc ccgcgctcgc ccacgcgatc gccgacgtgc
     4981 tcgccgagca ggtgaagcac ctcgacgccg acatcgtcca gctcgacgag gccaacctgc
     5041 ccggccaccc ggaggaatgg gagtgggccg cgtcggcgct caatcgcgtc ctcgacgcgg
     5101 tgaagacgac gccggcggtg cacctctgct tcggcaacta cggcggccag agcgtccagc
     5161 acggcacctg ggagcagctc atgcgctacc tgaacgcgct ccacgccgac cacgtcgtcc
     5221 tcgagtgcgc gcaccgcccg cccgaagagc tcgcggtgtt caaggacctg aagcccgaaa
     5281 tcggcttcgg cctcggcgtc gtcgacatca aggcgaccga gatcgagtcg gccgacgcga
     5341 tcgcgcgagc gatcgagcgg gccgagaacc tgctcggcgc aggccgggtc cgctacatcc
     5401 accccgactg cggcttctgg atgctgaagc gcccgatcgc cgacgcgaag atccgcgcgc
     5461 tcgcgcaggg ccgcgacctc tacgagggcc gcgcccactg agggacgacg aggcgtcgga
     5521 cctgtccgac cggaatcggg gcggttgccg acgccaagcc cgcgtcggca ccgacgtctg
     5581 cgagggggcg ccgcggcaac aatcgacccg aagtacgccg gctcggagac gcgcatgaac
     5641 aacgccagga tctacatcgt cgaagacag
//
LOCUS       DASVHM010000069         2249 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_220988, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000069 DASVHM010000000
VERSION     DASVHM010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2249
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220988"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..463
                     /gene="grpE"
                     /locus_tag="VF308_01280"
     CDS             <1..463
                     /gene="grpE"
                     /locus_tag="VF308_01280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEX7435311.1"
                     /translation="PPSSAPSPSDLEARHAELSDAYLRAKAEAENTRRRAEEEMTKAR
                     KFAVESFAESLLPVRDSLEAAIAIPAATPEQLLEGVHATLRQLTTALERNRVVEVNPP
                     AGAKFDPHQHQAISVVPAAQDPNTVVAVLQKGYTIADRVLRPALVTVSASG"
     gene            534..>2249
                     /gene="dnaK"
                     /locus_tag="VF308_01285"
     CDS             534..>2249
                     /gene="dnaK"
                     /locus_tag="VF308_01285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012436343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEX7435312.1"
                     /translation="MAKIIGIDLGTTNSCVAIMEGDKPRVIENSEGARTTPSVVAYLE
                     SGEILVGAAAKRQAVTNPKNTIYAVKRLIGRKFTEKEVQKDIGLMPYKIVAADNSDAW
                     VEVRGDKLAPQQISAEILRKMKKTAEDYLGEKVVDAVITVPAYFNDAQRQATKDAGRI
                     AGLEVKRIINEPTAAALAFGLDKTSKGDRKIAVYDLGGGTFDISIIEIADVDGEKQFE
                     VLSTNGDTFLGGEDFDQRIIDYIIAEFKKDQGVDLSKDVLALQRLKEAAEKAKIELSS
                     SQQTEINLPYITADQSGPKHLNIKLTRAKLEALVEDLIERTIGPCRTAIKDAGVSVSQ
                     IDDVILVGGQTRMPKVQDKVKEFFAKEPRKDVNPDEAVAVGAAIQGQVLIGDRKDVLL
                     LDVTPLSLGIETLGGVMTKMIQKNTTIPTKFAQTFSTADDNQPAVTIKVYQGEREMAS
                     GNKSLGEFNLEGIAPAPRGMPQIEVTFDIDANGILHVGAKDKATGKENKIKIQANSGL
                     NEDEIKRMVQDAEAHAEEDKKAMELVTARNQCDALVHSVKKSLAEYGDKLSADEKSKI
                     EAALKE"
BASE COUNT          502 a          744 c          722 g          281 t
ORIGIN      
        1 gccgcccagc tcagcgcctt cgccgagcga cctcgaagcc cgccacgccg agctttccga
       61 cgcctacctg cgcgccaagg ccgaagccga gaacacccgg cgccgcgccg aggaagagat
      121 gaccaaggcg cgcaagttcg cggtcgagag cttcgccgaa agcctcctgc cagtgcgcga
      181 cagcctggag gcggcgatcg cgatcccggc ggcgacaccc gagcagctgc tcgagggcgt
      241 ccacgccacc ctgcgccagc tgacgacggc gctcgagaga aacagggtcg tcgaggtcaa
      301 cccgcccgcg ggcgcgaagt tcgacccgca ccagcaccag gcgatcagcg tcgtcccggc
      361 ggcgcaggac ccgaacacgg tcgtcgccgt cctgcagaag ggctacacga tcgccgaccg
      421 cgtcctgcgt ccggcgctgg tcacggtcag cgcttccggc tgagcgacac ctcgcttgaa
      481 acgtcgcggc tgatcctcac ctctgaagca actgaatttt tctggagaac aacatggcaa
      541 agatcatcgg catcgacttg gggaccacca actcgtgcgt cgcgatcatg gaaggcgaca
      601 agccgagagt gatcgagaac agcgaaggcg cgcgcacgac cccgtcggtc gtcgcctatc
      661 tggagagcgg cgagatcctg gtcggcgccg ccgccaagcg tcaggcggtg accaatccga
      721 agaacacgat ctacgcggtg aagcgcctga tcggccgcaa gttcaccgag aaggaagtgc
      781 agaaggacat cggcctgatg ccgtacaaga tcgtcgcggc cgacaacagc gacgcctggg
      841 tcgaggtgcg cggcgacaag ctcgcgccgc agcagatcag cgccgagatc ctgaggaaga
      901 tgaagaagac cgccgaggac tacctcggcg agaaggtcgt cgacgcggtg atcacggtgc
      961 cggcgtactt caacgacgcg cagcgccagg cgaccaagga cgccggccgc atcgccggcc
     1021 tcgaggtcaa gcggatcatc aacgagccga cagcggccgc gctggccttt ggcctcgaca
     1081 agacctcgaa gggcgaccgc aagatcgccg tctacgacct cggcggcggc acgttcgaca
     1141 tctcgatcat cgagatcgcg gacgtcgacg gcgagaagca gttcgaagtg ctgtcgacca
     1201 acggcgacac cttcctcggc ggcgaagact tcgaccagcg gatcatcgac tacatcatcg
     1261 ccgagttcaa gaaggaccag ggcgtcgacc tctcgaagga cgtgctcgcc ctgcagcgtc
     1321 tgaaggaagc ggcggagaag gcgaagatcg agctctcgag ctcgcagcag accgagatca
     1381 acctgccgta catcacggcg gaccagtccg gtccgaagca cctcaacatc aagctgactc
     1441 gcgccaagct cgaagcgctg gtcgaagacc tgatcgaacg gacgatcggg ccgtgccgca
     1501 ccgccatcaa ggacgccggc gtctcggtct cgcagatcga cgacgtcatc ctggtcggcg
     1561 gccagacgcg aatgcccaag gtgcaggaca aggtcaagga attcttcgcc aaggagccga
     1621 ggaaggacgt caaccccgac gaggccgtcg cagtcggcgc cgcgatccag ggccaggtcc
     1681 tgatcggcga ccgcaaggac gtgctgctcc tcgacgtcac cccgctcagc ctcggcatcg
     1741 agacgctcgg cggcgtgatg accaagatga tccagaagaa cacgaccatc ccgaccaagt
     1801 tcgcgcagac cttctcgacc gccgacgaca accagccggc ggtgacgatc aaggtctacc
     1861 agggcgagcg cgagatggcg tcgggcaaca agtcgctcgg cgagttcaac ctcgagggca
     1921 tcgctccggc gccgcgcggc atgccgcaga tcgaggtcac cttcgacatc gacgccaacg
     1981 gcatcctgca cgtcggcgcc aaggacaagg cgaccggcaa ggagaacaag atcaagatcc
     2041 aggcgaactc gggtctcaac gaggacgaga tcaagcgcat ggtgcaggac gccgaagcac
     2101 acgccgagga agacaagaag gcgatggagc tcgtcaccgc gcgcaaccag tgcgacgcgc
     2161 tggtgcactc ggtcaagaag tcgctcgcgg aatacggcga caagctcagt gccgacgaga
     2221 agtcgaagat cgaggccgcg ctcaaggaa
//
LOCUS       DASVHM010000070         3536 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_149417, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000070 DASVHM010000000
VERSION     DASVHM010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3536
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149417"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..828
                     /locus_tag="VF308_01290"
     CDS             <1..828
                     /locus_tag="VF308_01290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003060674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX7435313.1"
                     /translation="ENIIPRVRALLAASPAREVEFTLEWASVYTFACMRMERFRHDRV
                     VFAGDAAHGVSPFGARGANSGVQDAENLAWKLALVVRGEAPESLLDSYGEEREFAADE
                     NIRASTRSTDFITPKSEISRLFRDAVLGLAREHAFARRLVNSGRLSVPTTLRDSPLNT
                     PDADLFYGAMVAGAVAADAPLVRDGRATWLLHELGADFTLLVFGEAPSWSGTLPLKVT
                     SIAPTAFEDRDGLAKQRYDAMPGATYLLRPDLHVCARWREPTEAGVRAALARARGLQ"
     gene            848..1072
                     /locus_tag="VF308_01295"
     CDS             848..1072
                     /locus_tag="VF308_01295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006221681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2783 domain-containing protein"
                     /protein_id="HEX7435314.1"
                     /translation="MMLNTEPNLESADDFYEALIDAHHDLSAAQSHELNAKLVLLLAK
                     HIGTLAVLREALTAARANTLGEPASTMERP"
     gene            1069..2394
                     /gene="hmgA"
                     /locus_tag="VF308_01300"
     CDS             1069..2394
                     /gene="hmgA"
                     /locus_tag="VF308_01300"
                     /EC_number="1.13.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004411 - homogentisate 1,2-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HEX7435315.1"
                     /translation="MSDPLPPLAGFGNQHASEALPGALPVGRNSPQRVAHGLYAELLS
                     GTAFTAPRAANLRTWLYRRRPSVQSGGYTALAHPWLKTGARGGVAAPPDPMRWSPLAV
                     PEAKDEPLDFIDGLRTLVVNGDEQAQAGIAAHIVLANRSMGRRAFINADGEMLIVPQQ
                     GRLTITTELGVLEAAPGDVVLLPRGMAFKVALRDGRARAYVCENYGAPFRLPALGPIG
                     SNGLANPRDFRAPHAAPEDAAGGGYELVKKFGGALWRASASASPFNVVAWHGNFVPYV
                     YDTRHFMTIGSISHDHPDPSIFTVLTSPSDTPGTANCDFVIFPPRWLVAEDTFRPPWY
                     HRNVMSEFMGLIHGQYDAKPEGFKPGGASLHNSMVPHGPDTDAFEKASRAELVPQKLD
                     NTLAFMFESRWCFKPTAFALECGALDPDYAACWAGLADASQAGTMVAAV"
     gene            2479..2937
                     /locus_tag="VF308_01305"
     CDS             2479..2937
                     /locus_tag="VF308_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435316.1"
                     /translation="MKKLVLLALAACAAAPVLAAPSVGVSIGINQPGVYGRINIGNYP
                     EPMLVYPEPVMVAPAPIAVQRQPIYLYVPLAHQQNWRRYCGRYSACGQPVYFVQERWV
                     RERWEHEHRDERRAHADRGREGPRNEHGDRGRHRGQGDREERSDDRHPGH"
     gene            2983..>3536
                     /locus_tag="VF308_01310"
     CDS             2983..>3536
                     /locus_tag="VF308_01310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEX7435317.1"
                     /translation="MTAPYRADQVGSLLRPDGLAEARRRWKAGDLDRAELTQAEDRAI
                     VEAVRLQEALGLESITDGEFRRDWWHLDFLARLEGVTLQENPGPKFKIAGQSEQPPIP
                     TVTGRIACAEPIMVDHFAFLKSVTTKTAKMTIPSPSMLHLRGGRASIAKAVYPDLAEF
                     WADVAAAYRVAIRHLADAGCRYLQL"
BASE COUNT          554 a         1240 c         1199 g          543 t
ORIGIN      
        1 gagaacatca tcccgcgggt gcgcgcgctg ctggcggcgt cgccggcgcg cgaggtcgag
       61 ttcacgctcg aatgggccag cgtctacacg ttcgcctgca tgcggatgga gcgctttcgc
      121 cacgaccgcg tcgtgttcgc cggcgacgcg gcgcatggcg tatcgccgtt cggcgcgcgc
      181 ggcgcgaact ccggcgtgca ggacgccgag aacctggcgt ggaagctcgc gctcgtggtc
      241 cggggcgaag cgccggaatc gctgctcgat agctatggcg aggagcgtga attcgcggcc
      301 gacgaaaaca tccgcgcgag cacgcggtcg accgacttca tcacgccgaa gagcgagatc
      361 agccgtctgt tccgcgacgc cgtgctcggc ctcgcgcgcg agcatgcgtt cgcgcgccgg
      421 ctcgtcaaca gcggccggct ctcggtgccg acgacgctgc gcgactcgcc cctgaatacg
      481 cccgatgcgg atcttttcta cggcgcgatg gtggccggcg cggtcgccgc cgacgcgccg
      541 ctcgtgcgcg acggccgcgc gacctggctg ttgcacgaac tcggtgccga tttcacgctg
      601 ctggtgttcg gcgaggcgcc gtcgtggtcc gggacgctgc cgctgaaggt cacgagcatc
      661 gcgccgaccg ccttcgaaga tcgcgacggg ctggcgaagc agcgctacga cgcgatgccg
      721 ggtgccacct acctgctgcg gccggacctg catgtctgcg cccgctggcg cgagccgacc
      781 gaggccggcg tgcgtgcggc cctggcacgc gcccgtggcc tgcaatgagg ccgggcgcgg
      841 aaaggccgtg atgctgaata ccgaacccaa tctcgaatca gccgacgatt tctacgaggc
      901 gctgatcgat gcgcaccacg atctgagcgc tgcgcagagc cacgaactca acgccaagct
      961 ggtgctgctg ctggccaagc acatcggcac gctcgccgtg ctgcgcgaag cgctcaccgc
     1021 ggcgcgcgcc aacaccctcg gtgaaccggc gagcacaatg gaacgaccat gagcgacccc
     1081 cttccacccc tcgcaggttt cgggaatcag cacgcgagcg aggcccttcc gggagccttg
     1141 ccggtcgggc gcaacagccc gcaacgcgtg gcccacggcc tgtatgccga gctgctgagc
     1201 ggcactgcgt tcacggcgcc gcgcgccgcc aacctgcgca cctggctgta tcggcgccgg
     1261 ccctcggtgc agtccggcgg ctatacggcg ctcgcccatc cctggctcaa gaccggcgcg
     1321 cgcggcggcg tcgccgcacc gcccgatccg atgcgctgga gcccgctcgc cgtgcccgag
     1381 gcgaaggacg agccgctcga tttcatcgat ggcctgagga cgctggtcgt caacggcgac
     1441 gagcaggcgc aggccgggat tgctgcgcac atcgtgctgg cgaatcgctc gatggggcgg
     1501 cgcgccttca tcaacgccga cggcgaaatg ctgatcgtgc cgcagcaggg gcgcctgacc
     1561 atcacgaccg aactcggtgt gctcgaagca gcacccggcg atgtggtgct gctgccgcgc
     1621 ggcatggcct tcaaggtggc gctgcgcgac ggcagggcgc gcgcctatgt ctgcgagaac
     1681 tacggcgcgc cgttccgctt gccggcgctc gggccgatcg gctcgaacgg cctggccaat
     1741 ccgcgcgact tccgggcccc gcacgcggcc cccgaggacg ccgccggcgg cggctacgag
     1801 ctggtgaaga agttcggcgg tgcgttgtgg cgtgcgagcg cgtcggcgtc gcccttcaat
     1861 gtggtcgcgt ggcatggcaa cttcgtgcct tacgtctacg acacgcgcca tttcatgacc
     1921 atcggctcga tcagccacga ccacccggac ccttcgatct tcaccgtgct gacttcgccg
     1981 agcgacacgc ctggcaccgc gaattgcgac ttcgtgatct ttccgccgcg ctggctcgtc
     2041 gccgaagaca cgtttcgccc gccctggtac caccgcaacg tgatgagcga attcatgggc
     2101 ctgatccacg gccagtacga cgcgaagcca gaaggcttca agcccggcgg cgcgagcctg
     2161 cacaactcga tggtgccgca cgggcccgac accgatgcct tcgagaaggc ttccagggcc
     2221 gagctcgtgc cgcaaaaact cgacaacacg ctcgccttca tgttcgagag ccgctggtgc
     2281 ttcaagccga cggcgttcgc gctggaatgc ggcgcgctcg acccggatta cgcggcctgc
     2341 tgggccggac tcgccgacgc gtcgcaggcg ggcacgatgg ttgccgccgt gtaagggaat
     2401 gcacgcgacg cgtgccgtgt cctcgggatg tggccctggc gcgttgttgc ctcaggggaa
     2461 cttccccgtg gagatcacat gaagaagctc gtcctcctgg ccctcgcggc ctgtgcagcc
     2521 gctcccgtgc tcgccgcccc cagcgtcggc gtgtcgatcg gcatcaatca gccgggcgtt
     2581 tacggacgca tcaacatcgg aaactatccc gaaccgatgc tggtctatcc ggaaccggtg
     2641 atggtggccc cggcgccgat cgcggtgcag cgtcagccga tctatctcta cgtgccgctc
     2701 gcccatcagc agaactggcg tcgctactgc ggtcgctaca gcgcctgcgg gcaaccggtc
     2761 tacttcgttc aggagcgctg ggtccgcgag cgttgggagc acgaacaccg cgatgagcgg
     2821 cgcgcgcatg ccgatcgcgg gcgcgagggt ccgcgcaacg agcacgggga ccgcgggcgc
     2881 caccgtgggc aaggcgatcg cgaagaacgc agcgacgacc ggcaccccgg tcattgacat
     2941 cgggtcatgg gggatacttc ggcgccgagc gaaggtgcca ctatgaccgc cccctaccga
     3001 gccgaccagg tcggcagcct gctgcgcccc gacgggctcg ccgaggcgcg gcgccggtgg
     3061 aaggccggtg acctcgatcg cgccgaactg actcaggcgg aagaccgcgc gatcgtcgag
     3121 gccgtgcggc tccaggaggc gctgggcctc gaaagcatca ccgacggcga gttccgccgc
     3181 gactggtggc atctcgactt cctcgcccgt ctcgagggcg tcaccctgca ggaaaatccc
     3241 gggccgaaat tcaagatcgc gggccagagc gagcagccgc cgatccccac ggtgaccggc
     3301 cgcatcgcct gcgccgaacc gatcatggtc gatcacttcg cgttcctgaa gtcggtcacg
     3361 acgaagaccg cgaagatgac gatcccgtcg ccgtcgatgc tgcacctgcg cgggggtcgc
     3421 gcttcgatcg cgaaggcggt ctatcccgat ctcgccgaat tctgggccga tgtggccgcc
     3481 gcctatcgcg tcgcgatccg ccatctggcg gatgccggct gccgctatct gcagct
//
LOCUS       DASVHM010000071         3667 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_582020, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000071 DASVHM010000000
VERSION     DASVHM010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3667
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582020"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VF308_01315"
     CDS             <1..208
                     /locus_tag="VF308_01315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019654381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEX7435318.1"
                     /translation="TFRPEVGPPDLGPDWLGGFFCPCHQSKFDLAGRVFKGVPAPTNL
                     VIPPHKYLSDTRIAIGVGEDGKEA"
     gene            221..1582
                     /locus_tag="VF308_01320"
     CDS             221..1582
                     /locus_tag="VF308_01320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEX7435319.1"
                     /translation="MQKIMNWIDARFPLTALWESQWGKYVAPKNFNFWYYFGSLAAFA
                     LVLQIVTGIILTMNYKPDAARAFESVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHM
                     FRGLLYGSYRKPRELVWLFGCGIFLCMMAEGFFGYLLPWGQMSYWGAQVIVNLFSAVP
                     FIGPDLSLLIRGDFVVGDATLNRFFSFHVIAVPLVLLVLVVAHIIALHEVGSNNPDGV
                     EIKDTKDANGRPVDGIPFHPYYSVHDIYAVSVFLFIFSAVLFFAPEGGGYLLEFNNFI
                     EANPLKTPPHIAPVWYFTPYYSMLRATTDLMVNVLAIILAIGAALAILRGGFRASAKI
                     AIAVAAIVAVFLLKTFDAKFWGVVVMGGAVLILFLLPWLDRSPVKSIRYRPDWHKYVY
                     AVFVIFFLALGYLGSQPPSTAGNYVSQVGTLVYFGFFLLMPWWSRIGTFKPVPSRVTF
                     KSH"
     gene            1604..2380
                     /locus_tag="VF308_01325"
     CDS             1604..2380
                     /locus_tag="VF308_01325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016445599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HEX7435320.1"
                     /translation="MKKLLLSLLVVLGFVLPLAPASANEGYPWDPFPRTKMTDTAALQ
                     NGARIFTNYCLSCHSATYMRYNRLHDIGLSDDEIRKNLLFATDKVGDTMKTSLDPRQA
                     KDWFGAAPPDLSVIARSRAEVGKGSGADYLYTLWRTFYRDDAKPTGWNNLAFPDIAMP
                     HALWQLQGERRAKFVEVKDPHAEGRTTHRFAGFEQITPGTLDERQYDEAVGDLVAYLQ
                     WMGEPAQGTRVRIGVGVLVFLGLLVVITWRLSSAYWRNVH"
     gene            2480..3091
                     /locus_tag="VF308_01330"
     CDS             2480..3091
                     /locus_tag="VF308_01330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HEX7435321.1"
                     /translation="MMVLYSGTTDPYSHRCRFVLFEKGMDFEIRDVDLFAKPEDIALM
                     NPYNEVPILVERDLILYESHIINEYIDERFPHPQLMPGDPVARARVRLFLFNFEKELF
                     AHVNVLEGRGVKGTDKQLEKARSQIRDRLTQLAPIFLKNKYMLGDDFSMLDVAIAPLL
                     WRLDYYGIDMSKNAVPLLKYAERIFSRPAYIEALTPSEKVMRK"
     gene            3109..>3667
                     /locus_tag="VF308_01335"
     CDS             3109..>3667
                     /locus_tag="VF308_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HEX7435322.1"
                     /translation="MTSPIAPATAGTSTRPYLIRALHDWCTDNGFTPYIAVFVDEHVQ
                     VPKEYVKNNEIVLNVGFEATSALKLGNELIEFKARFGGTSREIAVPIDHVIAIYAREN
                     GQGMAFPMPSDAAGGDAADNGKPDSTGAPSRGPRLAGPAGAAARKGGTALTLSPSPGP
                     AARSNAEAPSDPTPPSEPPSPKRPSL"
BASE COUNT          611 a         1282 c         1134 g          640 t
ORIGIN      
        1 gacgtttcgc ccggaagtgg gtccccccga cctgggtccc gattggctcg gtggcttctt
       61 ctgcccatgc caccagtcca aattcgacct ggccggccgc gtcttcaagg gcgtgccggc
      121 accgacgaac ctcgtcattc cgccgcacaa gtacctgtcc gacacgcgca tcgcgatcgg
      181 cgtcggcgaa gacggcaagg aagcctgacg gagcgcattg atgcaaaaga taatgaactg
      241 gatcgatgcg cgcttcccgc tgaccgccct ctgggagagc cagtggggca agtacgtcgc
      301 gccgaagaat ttcaacttct ggtactactt cggctcgctg gcggcctttg ccctggtgtt
      361 gcagatcgtc accggcatca tcctgacgat gaactacaag ccggacgccg cgcgggcgtt
      421 cgagtcggtc gaatacatca tgcgcgacgt gccctggggc tggctcgtcc gctacatgca
      481 ctcgaccggc gcgtcggcgt tcttcatcgt cgtctacctg cacatgttcc gcggcctgct
      541 ctacggcagc tacaggaagc cgcgcgagct ggtctggctg ttcggctgcg gcatcttcct
      601 gtgcatgatg gccgagggct tctttggcta cctgctgcca tggggccaga tgagctactg
      661 gggcgcgcag gtgatcgtca acctgttctc ggccgtgccc ttcatcggcc cggacctgtc
      721 gctcctgatc cgcggcgact tcgtcgtcgg cgacgcgacc ctcaaccgct tcttcagctt
      781 ccacgtcatc gccgtgccgc tggtgctgct cgtcctggtc gtcgcgcaca tcatcgccct
      841 gcatgaggtc ggctcgaaca accccgacgg cgtcgagatc aaggacacca aggacgcgaa
      901 cggccgcccg gtcgacggca tcccgttcca cccgtactac tcggtgcacg acatctatgc
      961 ggtgagcgtg ttcctgttca tcttcagcgc ggtgctcttc ttcgcgcccg agggcggcgg
     1021 ctacttgctc gagttcaaca acttcatcga ggccaacccg ctgaagacgc cgccgcacat
     1081 cgccccggtc tggtacttca cgccgtacta ctcgatgctg cgcgcgacca ccgacctgat
     1141 ggtcaacgtg ctcgcgatca tccttgcgat cggcgcggcg ctggcgatcc tgcgcggcgg
     1201 cttccgcgcc tcggccaaga tcgcgatcgc cgtcgcggcg atcgtcgcgg tgttcctgct
     1261 caagaccttc gacgccaagt tctggggcgt ggtcgtcatg ggcggcgcgg tgctgatcct
     1321 gttcctgctg ccgtggctcg accgcagccc ggtcaagtcg atccgctacc ggcccgactg
     1381 gcacaagtac gtctacgccg tgttcgtgat cttcttcctc gccctcggct acctcggctc
     1441 gcagccgccg tcgacggcgg gcaactacgt ctcgcaggtc ggaacgctcg tctacttcgg
     1501 cttcttcctc ctgatgccgt ggtggagccg catcggcacc ttcaagccgg tgccgagccg
     1561 cgtcacgttc aagtcccact gaccgccgca gcagagccca tcgatgaaga aactcctgct
     1621 tagcctgctc gtcgtcctcg gcttcgtgct gccgctcgcg cccgcatcgg cgaacgaggg
     1681 ctacccctgg gatccgttcc cgcgcacgaa gatgaccgac acggcggcgc tgcagaacgg
     1741 cgcccgcatc ttcaccaact attgcctgag ctgtcattcg gccacgtaca tgcgctacaa
     1801 ccgcctgcac gacatcggcc tcagcgacga cgagatcagg aagaacctgc tgttcgcgac
     1861 cgacaaggtc ggcgacacga tgaagacgtc gctcgacccg cgccaggcca aggactggtt
     1921 cggcgccgcg ccgccggatc tctcggtgat cgcgcgctcg cgcgccgagg tcggcaaggg
     1981 cagcggcgcc gactacctct acacgctctg gcgcaccttc tatcgcgacg atgccaagcc
     2041 gaccggctgg aacaacctcg ccttccccga catcgccatg ccgcatgcgc tctggcagct
     2101 gcagggcgag cggcgcgcca agttcgtcga ggtcaaggat ccgcacgcgg aaggcagaac
     2161 gacgcatcgc ttcgccggct tcgagcagat cacgcccggc acgctcgacg agcgccagta
     2221 cgacgaggcg gtcggcgacc tggtcgccta cctgcaatgg atgggcgagc cggcgcaggg
     2281 aacgcgcgtg cgcatcggcg tcggcgtgct ggtgttcctc ggcctgctcg tggtgatcac
     2341 ctggcgcctc agctcggcgt actggagaaa cgtccactag accagctgcc gcctcgcgag
     2401 gcggcgcgtc cttcaggcga agccggcgac cagcccgctt cgccttccgc atttttcgca
     2461 tccctgggag ttctcgatca tgatggtgct ctattccgga accaccgacc cgtactcgca
     2521 ccgctgccgc ttcgtgctct tcgaaaaggg aatggacttc gagatccgcg acgtcgacct
     2581 gttcgccaag cccgaagaca tcgcgctgat gaacccgtac aacgaggtgc cgatattggt
     2641 cgagcgcgac ctcattctgt acgagtcgca catcatcaac gagtacatcg acgagcgctt
     2701 cccgcacccg cagctgatgc cgggcgaccc ggtggcgcgc gcgcgcgtgc gcctgttcct
     2761 cttcaacttc gagaaggagc tgttcgccca cgtcaacgtc ctcgagggcc gtggcgtcaa
     2821 gggcaccgac aagcagctcg agaaggcgcg ttcgcagatc cgcgatcggc tcacccagct
     2881 ggcgccgatc ttcctcaaga acaagtacat gctgggcgac gacttctcga tgctcgacgt
     2941 cgcgatcgcg ccgctgctct ggcggctcga ctactacggc atcgacatgt cgaagaacgc
     3001 ggtgccgctc ctgaagtacg ctgagcggat cttctcgcgg ccagcctaca tcgaggcgct
     3061 gacgccgtcc gagaaggtga tgcgcaagta aggaaggcag agacaagcat gacgtcgccg
     3121 atcgcacccg ccacggccgg cacgtcgacg cggccgtacc tgatccgggc cctgcacgac
     3181 tggtgcaccg acaacggctt cacgccgtac atcgccgtct tcgtcgacga gcacgtgcag
     3241 gtgccgaagg aatacgtcaa gaacaacgag atcgtcctca acgtcggctt cgaggcgacc
     3301 agcgcgctca agctcggcaa cgagctgatc gagttcaagg cgcgcttcgg gggcacctcg
     3361 cgcgagatcg ccgtgccgat cgatcacgtg atcgcgatct acgcgcgcga gaacggccag
     3421 ggcatggcgt tcccgatgcc gagcgacgcc gccggtggcg acgcggcgga caacggcaag
     3481 cctgacagca ccggtgcgcc gtcgcgcggg ccgcgcctgg ccggaccggc cggcgccgcg
     3541 gcgcgcaagg gcggcaccgc gctgacgctg agcccgagcc cgggtccggc ggcgcgatcg
     3601 aatgccgagg cgccgtccga cccgacgccg ccgagcgagc cgccgagccc gaagcggcct
     3661 tcgctga
//
LOCUS       DASVHM010000072         1666 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_797828, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000072 DASVHM010000000
VERSION     DASVHM010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_797828"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..282)
                     /locus_tag="VF308_01340"
     CDS             complement(133..282)
                     /locus_tag="VF308_01340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435323.1"
                     /translation="MPPVDVVHLAASLLEHFIGADVAARLRACLRFLTPLTVRVAQHA
                     DAHVA"
     gene            808..1035
                     /locus_tag="VF308_01345"
     CDS             808..1035
                     /locus_tag="VF308_01345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005795629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEX7435324.1"
                     /translation="MQAQKELDTRGLNCPLPILKAKKALADMSSGDVLKVVATDPGSV
                     RDFQAFARQTGNELVEQATNADEFIHFLRRR"
     gene            complement(1064..>1666)
                     /locus_tag="VF308_01350"
     CDS             complement(1064..>1666)
                     /locus_tag="VF308_01350"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013519639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase"
                     /protein_id="HEX7435325.1"
                     /translation="VRAVKPDDMECVFVRQAKALGLGHAVLCARHVVGDHPFAVLLPD
                     DLMIGTPPVLAQMVAQFDARRASIVAVQEVPAEHTRRYGIVAGTAAGTRLMDLSHIVE
                     KPAPEAAPSRLGVAGRYILTPRVFDEIANQPRGVGGEIQLTDGIAGLLRHEKVYAYRY
                     EGKRYDCGSKEGLLRANVELGLAHAELGAGFRAYLRSLDL"
BASE COUNT          305 a          551 c          558 g          252 t
ORIGIN      
        1 ggtgatgtcg tgactggaac tcaagtggac tcccaagagg gcgccacagg agtcgtgtcg
       61 ctcgtgaaag tgaaggctat cgagcctcgt cggcggtgac catcgccatc ctctgcgggt
      121 gtcgttcaac cctcacgcta cgtgggcgtc ggcatgctgc gcgacacgaa ccgtcagcgg
      181 ggtgagaaac cgcagacacg cgcgcaggcg ggccgccacg tcggcgccga tgaagtgctc
      241 gagcaagctg gccgccagat gcacaacgtc aaccggcggc atgaagacgc cgcacgcgcc
      301 acgccacagc ggtgtgcgaa caaacgcgcg ggcccactag gttcgccagc gctccagggt
      361 acgcagtgga atcgccagcc cggccagcat cggcgcgcct gagttcgagc cggcatgccg
      421 gctcgaactc aaaacgacca ccagcgccaa atacacgcgc cggccgagga agcgcaccga
      481 cgtcgctgta gttcgcttgc ggcatgtacc gcagcaaaaa ctgaaccgat tctcgaagct
      541 cgatctgaac tcggcaggca accgcgtgac ttgcgagggt agttcgcgca atgaagtcgc
      601 ccttcacagg cgcatcccgc ggcttgagtc tgggccgcct ggtctcggtc aatctcgagc
      661 agcagggcaa aaaactgggg tcttgcaaca gggcatggca cactggaatc gtctcttggc
      721 ttggtaacca gagttaacgg tccgccgctt cgtggcactc ggtgagcatg aacaggccct
      781 aaaatccgtc ctcgatccaa ggacattatg caagcccaga aagaactcga cacgcgcgga
      841 ctcaactgcc cgcttccgat cctgaaggcc aagaaggcgc tggccgacat gtcgagcggc
      901 gacgtgctca aggtcgttgc gaccgatccg ggctcggtgc gcgatttcca ggccttcgcg
      961 cgccagaccg gcaacgagct cgtcgaacag gcgaccaacg ccgacgagtt catccacttc
     1021 ctgcgccggc gctagcggct tgccggcgcg gcaggtcgcc gcgtcagaga tcgagcgagc
     1081 gcaggtacgc gcgaaagccg gcgccgagtt cggcgtgcgc cagccccagt tccacgttgg
     1141 cccgcaggag gccttccttg ctgccgcagt cgtagcgctt gccttcgtag cggtaggcgt
     1201 acaccttctc gtggcgcagg agcccggcga tgccgtcggt cagctggatt tcaccgccga
     1261 cgccgcgcgg ctggttcgcg atttcgtcga agacccgcgg cgtgaggatg tagcgcccgg
     1321 ccacgcccag gcgtgacggc gcggcctcgg gcgcgggctt ttcgacgatg tggctcaggt
     1381 ccatgaggcg cgtgcccgcc gcggtgccgg cgacgatgcc gtagcgccgc gtatgctcgg
     1441 ccggcacctc ctgcaccgcg acgatcgagg cgcgccgcgc atcgaactgc gcgaccatct
     1501 gggccagcac cggcggcgtg ccgatcatca ggtcgtcggg caggagcacg gcgaacggat
     1561 ggtcgccgac gacgtggcgc gcgcacagga cggcgtggcc gaggccgagc gccttggcct
     1621 ggcggacgaa gacgcactcc atgtcgtcgg gcttgacggc gcgaac
//
LOCUS       DASVHM010000073         1830 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_726460, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000073 DASVHM010000000
VERSION     DASVHM010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1830
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_726460"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..864
                     /gene="rpsB"
                     /locus_tag="VF308_01355"
     CDS             <1..864
                     /gene="rpsB"
                     /locus_tag="VF308_01355"
                     /inference="COORDINATES: protein motif:HMM:TIGR01011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEX7435326.1"
                     /translation="LSKRIKRMHELRHLSEDGSLDLLPTREAMQLRGDLRKLEQNLGG
                     VGGMERIPAAVFVVDPRKEAIVIKEARKLKIPIVALVDTNCDPDEVDYIIPGNDDAIR
                     SCSLIVRVMADAVAEGRQLLTEAEMKVEAERKAAEAVAIAEAVAAAEKAAAAEKVAAE
                     AAEAEAQKAAAAAAAEAKKAAAEPVAKAPDIKPAAASAAAKKVEPKAAAKIEKPVVRA
                     EGAEKSAAKKVEPKAEPKADKPVAKVASAEKPAAKKVEPKADKPVAKAASADKPAAKK
                     AKPKAAEKPAE"
     gene            909..1514
                     /gene="tsf"
                     /locus_tag="VF308_01360"
     CDS             909..1514
                     /gene="tsf"
                     /locus_tag="VF308_01360"
                     /inference="COORDINATES: protein motif:HMM:NF013085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HEX7435327.1"
                     /translation="MAEINAALVKELREKSGAGMMDCKKALTATDGDLEQAMDELRKQ
                     GLASAQKKSSRATKDGAVDSYVHAGGKIGVLVEVGVETDFVSRSDPFKEFTHDLAMHV
                     AAAAPRWVTRGQVPEDVIAREKAIYAEQVKGKPEHMLEKIVTGKLEKFFAETCLMEQP
                     FIRDSDRTIEQLRTDLVGVIGENVEVRRFARFQLGETGSEA"
     gene            1532..>1830
                     /locus_tag="VF308_01365"
     CDS             1532..>1830
                     /locus_tag="VF308_01365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014750612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEX7435328.1"
                     /translation="MPSSAFHRVLLKLSGQALGSQARAIDPTTTKRLAGTIKVARSLD
                     VDVAIVVGGGNIFRGMAAAAGGMDRATGDYIGMIATVQNALALQDALEEEGVDTRV"
BASE COUNT          366 a          616 c          635 g          213 t
ORIGIN      
        1 ctcagcaagc gcatcaagcg catgcacgag ctccggcatc tctccgaaga cggctcgctc
       61 gatcttctgc ccacgcgcga ggccatgcag ctgcgcggtg atctgcgcaa gctcgaacag
      121 aacctcggcg gcgtcggcgg catggagcgc atccccgccg ccgtgttcgt cgtcgacccg
      181 cgcaaagagg ccatcgtcat caaagaagca cgcaagctca agatcccgat cgtcgcgctc
      241 gtcgacacga actgcgaccc cgacgaggtc gactacatca tcccgggcaa tgacgacgcc
      301 atccgcagct gttcgctgat cgtgcgcgtg atggccgatg ccgtggccga gggccgtcag
      361 ctgctcaccg aggccgagat gaaggtcgaa gccgagcgca aggcggccga agcggtggct
      421 atcgccgaag ccgtcgccgc cgccgagaag gccgccgccg ccgagaaggt tgccgcggag
      481 gccgctgagg ccgaggccca gaaggccgca gccgcagccg ctgccgaagc caagaaggct
      541 gcggccgagc ccgtggccaa ggcgcccgac atcaagccgg cggccgcgag cgccgcggcc
      601 aagaaggtcg agcccaaggc cgcggccaag atcgagaagc cggtcgtcag ggctgagggc
      661 gccgagaagt ccgcggcaaa gaaggtcgag cccaaggccg agccgaaggc cgacaagccg
      721 gtcgccaagg tcgcgtccgc cgagaagccc gcggccaaga aggtcgagcc gaaggccgac
      781 aagccggtcg ccaaggccgc gtccgccgac aagcccgcgg cgaagaaggc taagccgaag
      841 gctgccgaga agccggccga gtaacacccg tacaacgaca accgccgacc ctgagaaagg
      901 atcgcgctgt ggctgagatc aacgctgcac tggtaaagga gcttcgcgag aagagcggag
      961 ccgggatgat ggactgcaag aaggcgctga ccgcgaccga cggcgacctc gagcaggcga
     1021 tggacgagct gcgcaagcag ggcctcgcca gcgcccagaa gaagagctcc cgggcgacca
     1081 aggacggcgc cgtggattcg tacgtccacg ccggcggcaa gatcggcgtg cttgtggagg
     1141 tcggggtgga gaccgacttc gtgtcgcgca gcgacccctt caaggagttc acgcacgacc
     1201 tcgccatgca cgtcgccgcg gccgcgccgc gctgggtcac gcgcgggcag gtgcccgagg
     1261 acgtcatcgc ccgcgagaag gccatctacg ccgagcaggt caagggcaag cccgagcaca
     1321 tgctcgagaa gatcgtcacc ggcaagctcg agaagttctt cgccgagacg tgcctgatgg
     1381 agcagccgtt catcagggac agcgaccgta ccatcgagca gctgcgcacc gacctggtcg
     1441 gcgtcatcgg cgagaacgtg gaagtgcggc gcttcgcgcg cttccagctc ggcgagacgg
     1501 gctccgaggc ctgagggctg tggacggcga tttgccaagc tccgccttcc atcgcgtcct
     1561 cctcaagctg agcgggcagg cgctgggcag ccaagcgagg gccatcgatc cgacgacgac
     1621 caagcgcctg gccggcacga tcaaagtcgc gcgcagcctc gacgtcgacg tcgccatcgt
     1681 ggtcggcggc ggcaacatct ttcgcggtat ggccgccgcc gccggcggca tggatcgcgc
     1741 caccggtgac tacatcggca tgatcgccac cgtgcagaac gccctcgcgc tgcaggacgc
     1801 cctggaggaa gagggcgtcg acacgcgggt
//
LOCUS       DASVHM010000074         1647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_221239, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000074 DASVHM010000000
VERSION     DASVHM010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221239"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..575
                     /locus_tag="VF308_01370"
     CDS             <1..575
                     /locus_tag="VF308_01370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DnaJ C-terminal domain-containing protein"
                     /protein_id="HEX7435329.1"
                     /translation="CPTCHGSGKLIPEPCPACHGQGRLKKNKTLEVKIPPGINEGMRI
                     RSSGNGEPGPNGGPNGDLYIEIRMKPHDIFERDGDDLHCTVPVAMTSAALGGAIEVPT
                     LGGKAEIELPEGTQHGKTFRLRGKGIKGVRSSYPGDLYCHVSVETPIKLTEHQRKLLR
                     ELDDAFRKAGDRHSPTAKTWSDRVKDLFKA"
     gene            614..1522
                     /locus_tag="VF308_01375"
     CDS             614..1522
                     /locus_tag="VF308_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX7435330.1"
                     /translation="MSAGADSLKSILFALGANFLIALAKTAGAVFTGSSSMLAEAIHS
                     YADCANQALLLWGLREGRRRPSRDHPLGFGKAIYFWSFIVALMLFSMGGLFSIYEGVH
                     KLQATAPIENAWVAIGILVFGIAAESVSLWGCLREVNKDRGRQSLWRWFRSSRQSELL
                     VVFAEDIAALGGLTLALAFIALAQTTGNPVWDAAGSICIGVLLVLVAVLVGIEVKALL
                     IGQSVEGRVLERMREHLAAHDEVEAVYNLLTQQMGRDVMVAVKAKMRPAPSAHALIEA
                     INRVESSFRTAFPQVQWLFFEPDVAD"
BASE COUNT          268 a          568 c          547 g          264 t
ORIGIN      
        1 cctgcccgac ctgccatggc agcggcaagc tcatccccga gccttgcccg gcctgccacg
       61 gccagggccg gctcaagaag aacaagacgc tcgaggtcaa gattccgccc ggcatcaacg
      121 agggcatgcg gatccgctcg agcggcaacg gcgagccggg gcccaacggc ggcccgaacg
      181 gtgatctcta catcgagatc cgcatgaagc cgcacgacat cttcgagcgc gacggcgacg
      241 acctgcactg caccgttccg gtggcgatga cgagcgctgc gctcggcggc gcgatcgagg
      301 tgccgacgct cggcggcaag gccgagatcg agctgcccga aggcacgcag catggcaaga
      361 ccttccgcct gcgcggcaag ggcatcaagg gcgtgcgctc gagctacccg ggcgacctgt
      421 actgccacgt cagcgtcgag acgccgatca agctcaccga gcaccagcga aagctgctgc
      481 gcgagctcga cgacgctttc cgcaaggccg gcgatcggca ttcgccgacc gcgaagacct
      541 ggagtgatcg cgtcaaggac ctgttcaagg cctgacgccg acgagcccag cgcggccgcg
      601 tgagaatgcc gccatgtccg ccggtgccga ttcgctcaag tcgatcctgt tcgcgctcgg
      661 cgcgaacttc ctgatcgccc tcgccaagac ggccggtgcc gtcttcaccg gctcgtcgtc
      721 gatgctcgcc gaggcgatcc actcctacgc cgactgcgcc aaccaggcgc tcctgctctg
      781 gggcctgcgc gaagggcggc gccggccgag ccgcgaccac ccgctcggct tcggcaaggc
      841 gatctacttc tggagcttca tcgtcgccct catgctgttc agcatgggcg gactgttctc
      901 gatctacgag ggcgttcaca agctgcaggc gaccgcgccg atcgagaacg cctgggtggc
      961 gatcggcatc ctggtcttcg gcatcgccgc cgagagcgtc tcgctctggg gttgcctgcg
     1021 cgaagtcaac aaggatcgtg gccggcagag tctgtggcgc tggtttcgca gttcgcgcca
     1081 gagcgaactg ctcgtcgtct ttgccgaaga catcgccgcg ctcggcggcc tgacgctggc
     1141 gctcgcgttc atcgccctgg cgcagacgac cggcaacccg gtgtgggacg cggccggctc
     1201 gatctgcatc ggcgtgctgc tcgttctcgt cgccgtgctc gtcggcatcg aggtgaaggc
     1261 gctcctgatc ggccagagtg tggaaggtcg cgtcctcgag cgaatgcgcg agcacctcgc
     1321 cgcgcacgac gaagtcgaag ccgtctacaa cctgctcacc caacagatgg gccgcgacgt
     1381 gatggtcgcc gtcaaggcga agatgcggcc cgcgccatcg gcgcacgcgc tgatcgaggc
     1441 gatcaaccgt gtcgagagca gctttcgcac cgcatttccg caggtgcagt ggctcttctt
     1501 cgagcccgac gtcgccgact gatagtcgcc gctacctgtc tcggccgaac aggtcgcctt
     1561 ggccgacccg gctcggcgcc aggggttttc ggaactgcgt gaggtcgagc tcgcggcgct
     1621 cgtcggcgag gccgaagcgg cgtttgg
//
LOCUS       DASVHM010000075         1770 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_293330, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000075 DASVHM010000000
VERSION     DASVHM010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293330"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..213)
                     /locus_tag="VF308_01380"
     CDS             complement(<1..213)
                     /locus_tag="VF308_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010812824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1272 domain-containing protein"
                     /protein_id="HEX7435331.1"
                     /translation="MLELRPTCEHCNRALPPHASDARICSFECTFCASCVNDVLFNVC
                     PNCGGGFEPRPIRLRRNLRGDNDLAHH"
     gene            complement(326..514)
                     /locus_tag="VF308_01385"
     CDS             complement(326..514)
                     /locus_tag="VF308_01385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435332.1"
                     /translation="MNALTEIQPASQIEDEDVYDLIVDCQYFIAEIMERRLPKSVARQ
                     GSLLLGRLNASLDWQTVH"
     gene            complement(795..1763)
                     /locus_tag="VF308_01390"
     CDS             complement(795..1763)
                     /locus_tag="VF308_01390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007833758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium and cobalt transport protein CorA"
                     /protein_id="HEX7435333.1"
                     /translation="MLINCVAYEDGNRLADCPIDDISEYLKRPRCFVWVALKDATPEE
                     LAKMQLEFGLHDLAVEDARHGHQRPKIEEYGDTLFAVLHTVEVGAADELVLGEIDVFI
                     GPNFVLSTRNRTHQGFLGVRERAEREPHLLKHGSAFVFYALLDAVVDRYFPVIDALET
                     DLESIEDQIFEPHLGRANIERLYALKRKIGIVKHAVAPLQEAVAKLISGRVPQVCSNN
                     REYFRDVFDHLTRMNASLDSLRDTIGTAIQVNLSTLTIEETEITKRLAAWAGIFAIAT
                     ALAGIWGMNFQNMPELKLAWGYPAALAIITSACAFVWWRFRRAKWL"
BASE COUNT          277 a          571 c          629 g          293 t
ORIGIN      
        1 gtggtgggca aggtcgttgt cgccgcgcag gttgcgccgc agccggatcg gccgcggctc
       61 gaagccgccg ccgcagttgg ggcagacgtt gaacagcacg tcgttcacgc agctggcgca
      121 gaaggtgcac tcgaagctgc agatcctggc gtcgctcgcg tgcggcggca aggcgcggtt
      181 gcagtgttcg caggtgggac gaagttcgag catggcgggc ggaccgagtc gaaccctgaa
      241 gtatggtggc gcgccactcg ccgcgttcag ggcggacagc cgacgcgccc gaccgcgctc
      301 ggcgtgccgt cgcagcgaac gcgacctagt ggaccgtctg ccagtcgagc gacgcgttca
      361 gccggccgag cagcagcgag ccctgccgag ccaccgactt cggaaggcgt cgctccatga
      421 tctcggcaat gaagtactgg cagtcgacga tcaggtcgta gacgtcctcg tcctcgattt
      481 gcgatgcggg ttgaatctcg gtcagcgcgt tcatctcggc ctcggtgtct cgtcgtcccc
      541 ggcccggccc ggcgcggcgg cgccttgtcc cggtcttgct gcattcctta ccactgtctt
      601 cgggtcgtgc ccggcctccg gcccggggcg gctcgacgca gaaaggcaac acgacgtcct
      661 ctcgtgcgac ggccggggcc aaagcaggat gcagaggggg tagcaagact cgaacccgga
      721 cagcgccggg ccgcgtcggg ccgggctgcg gcgccgctcg cgcgccgatc agccggggcg
      781 gctcggcgcc ttgcctagag ccacttggcg cgacggaagc gccaccacac gaaggcgcac
      841 gcgctcgtga tgatcgcgag ggcggccgga tagccccatg ccagcttcaa ctccggcatg
      901 ttctggaagt tcatccccca gatgccggcg agtgcagtcg cgatggcgaa gatgccggcc
      961 cacgccgcga gccgcttggt gatctcggtc tcctcgatcg tcagcgtcga caggttgacc
     1021 tggatcgccg tgccgatcgt gtcgcgcagc gaatcgagcg acgcgttcat ccgcgtcaga
     1081 tggtcgaaga cgtcgcggaa atattcgcgg ttgttgctgc acacctgcgg cacgcggccg
     1141 ctgatgagct tggcgaccgc ctcctgcaat ggcgcgacgg cgtgcttgac gatgccgatc
     1201 ttgcgcttga gggcgtagag gcgctcgatg ttcgcgcgcc cgaggtgcgg ctcgaagatc
     1261 tggtcctcga tcgactcgag gtcggtctcg agcgcgtcga tgaccgggaa gtagcggtcg
     1321 accacggcat cgagcagcgc gtagaagacg aaggccgagc cgtgcttgag caggtgcggc
     1381 tcgcgctcgg cgcgctcgcg cacgccgagg aagccctggt gcgtgcggtt gcgcgtggag
     1441 aggacgaagt tcgggccgat gaagacgtcg atctcgccga ggaccaactc gtcggccgca
     1501 ccgacctcga ccgtgtgcag gaccgcgaac agcgtgtcgc cgtattcctc gatcttcggc
     1561 cgctggtggc cgtggcgcgc atcctcgacg gcaagatcgt gcaggccgaa ctcgagctgc
     1621 atcttggcga gctcttcggg cgtcgcgtcc ttcagcgcca cccagacgaa gcagcgcggg
     1681 cgcttgaggt actcgctgat gtcgtcgatc ggacaatcgg cgagccggtt gccgtcttcg
     1741 taggcgacgc agttgatcag cacagggcga
//
LOCUS       DASVHM010000076         3614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_582299, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000076 DASVHM010000000
VERSION     DASVHM010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3614
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582299"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..442)
                     /locus_tag="VF308_01395"
     CDS             complement(<1..442)
                     /locus_tag="VF308_01395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018422214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEX7435334.1"
                     /translation="MKLVTWNIQWCLGVDGRVDPKRIVDDARAFADFDVLCLQEVAAN
                     FATLKGSRGEDQFALLAALLPGFTPVTGTPVDVAGPDGSRRSFGNMILSRLPVEQVLR
                     VQLPWPADPAVRSMPRMLLEAVVQAPFGPLRVMTTHLEYYSQTQR"
     gene            complement(470..1306)
                     /locus_tag="VF308_01400"
     CDS             complement(470..1306)
                     /locus_tag="VF308_01400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011806423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEX7435335.1"
                     /translation="MTRTSTIFQPAPASRALETAAAWLLGLLWILPLAYAMWTAFHPA
                     AFSTRFEIGAPLSLQNFVNAWHAAPFARYFLNTTLLVAMVLAAQLVLGTLAAYALARF
                     EFRGRDLVFGLILLQLMVMPDVLIVENYRTMNALGLRDTIVAIGLPYFASAFGIFLLR
                     QTFKTVPKELDDAARVEGASALQVLLKVYVPLARPVYLAYALVSVSYHWNNFLWPLIV
                     TNSVETRPLTVGLQVFSSTDQGVDWSIITAATLMTSAPLLVGFLLFQRQFVQSFMRAG
                     IR"
     gene            complement(1321..2193)
                     /locus_tag="VF308_01405"
     CDS             complement(1321..2193)
                     /locus_tag="VF308_01405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017454711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEX7435336.1"
                     /translation="MGFRARVTPWLLLLPALTLLVAFTHWPALATVWDSFLSTPKKGR
                     PAHFIGIDNYRGMVEDEVFWQALTNNVIYAVGTIPLSIALAIAMALWVNSRIRGRGLL
                     RLAYFTPTVLPMIAVANIWLFFYTPQYGLLEQITQALGLPSHNWLGDKHTVLGAIIVV
                     AVWKEAGFFMIFYLAALQQIPPSLAEAAALEGASRAQYFRRVLFPLLMPTTLFVLVNA
                     LINSVRMVDHLFVMTRGGPDNASALLLYYIYQVGFSFWDTGYAAALTVVVLAALGVVA
                     FFQIRFLDRRTHYQ"
     gene            complement(2234..3520)
                     /locus_tag="VF308_01410"
     CDS             complement(2234..3520)
                     /locus_tag="VF308_01410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016836442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435337.1"
                     /translation="MKRALTLAFAATAIAAAAPAAAQKVTEISFYYPVAVGGPVTKTI
                     DQMAADFSKENPDVKVNPVYSGTYQESIVKVLTATKSGKPPQVAVLLSTDMFSLIDEE
                     AIVPIDDVAKSADDRKWLDGFYKSFMMNSRTGGKTWGVPFQRSTIVLYWNKDAFKEAG
                     LDPEKGPASWDQMVEFAKKLTKTDASGNVTQWGVKIPSSGFPYWLFQGLTTPNDVLLM
                     NDAGTETYFDKPAVIEALQYWVDLSARHKVMPAGVIEWGTTPKDFFEKKAAMIWTTTG
                     NLTNIRANAGFPFGVAMLPAKKHPGSPTGGGNFYVFAKTTPAEQQASLRFIKWATAPQ
                     RAAQWSIATGYVAVTPAAWDTPEMKKYAQEVPQALVARDQLQYSVAELSTHDNQRVTT
                     ALNNGLQAALTGSKPPADAMRDAQREATRILKDFKK"
BASE COUNT          592 a         1149 c         1288 g          585 t
ORIGIN      
        1 cgcgctgcgt ctgcgagtag tactcgaggt gcgtcgtcat cacgcgcagc ggcccgaacg
       61 gcgcctgcac gaccgcttcg agcagcatcc tcggcatgct gcgcaccgcc gggtcggcgg
      121 gccacggcaa ctgcacgcgc agcacctgct cgaccggcag gcggctcagg atcatgttgc
      181 cgaagctgcg gcgcgagccg tccggcccgg cgacgtcgac aggcgtgccg gtgaccggcg
      241 tgaagccggg gagcagcgcc gccaggagcg cgaactggtc ctcgccgcgg ctgcccttca
      301 gggtcgcgaa gttggcggcg acctcctgca ggcagaggac gtcgaagtcg gcgaacgcgc
      361 gagcgtcgtc gacgatccgc ttcggatcga cgcggccgtc gacaccgagg caccactgga
      421 tgttccaggt gacgagcttc atcgcgattc ctcgagaacg attgtcgcgt cagcggatgc
      481 ctgcgcgcat gaacgactga acgaactggc gctggaacag caggaagccg accaagagcg
      541 gcgccgaggt catgagcgtc gccgccgtga tgatcgacca gtcgacgccc tggtcggtcg
      601 acgagaacac ctgcaggccg accgtcagcg gccgcgtctc gaccgagttg gtgacgatca
      661 gcggccagag gaagttgttc cagtggtagc tcaccgagac cagcgcgtag gcgaggtaga
      721 ccgggcgggc gagcggaacg tagaccttga gcagcacctg caacgcgctt gcgccctcga
      781 cgcgcgccgc gtcgtcgagc tccttcggca ccgtcttgaa ggtctggcgc agcaggaaga
      841 taccgaacgc cgacgcgaag tacggcaggc cgatggcgac gatcgtgtcg cgcaggccga
      901 gcgcgttcat ggtccggtag ttctcgacga tcagcacgtc gggcatcacc atcagctgca
      961 gcaagatcag gccgaagacg aggtcgcggc cgcggaactc gaagcgcgcc agcgcgtacg
     1021 cggcgagcgt gccgaggacg agctgcgccg ccagcaccat cgcgacgagc agtgtcgtgt
     1081 tcaggaagta gcgcgcgaac ggcgccgcgt gccaggcgtt gacgaagttc tgcaggctga
     1141 gcggcgcgcc gatctcgaag cgcgtcgaga acgccgccgg gtggaacgcc gtccacatcg
     1201 cgtaggcgag cggcaggatc cagagcaggc cgagcagcca ggccgcagcg gtctcgagcg
     1261 cgcgcgacgc tggcgcgggc tggaagatgg tggaggtccg cgtcatgtcg ctgcgtgcga
     1321 tcactggtag tgcgtgcgcc ggtcgaggaa gcggatctgg aagaacgcga ccacgccgag
     1381 cgcggcgagg acgacaacgg tgagcgccgc cgcgtagccg gtgtcccaga agctgaagcc
     1441 gacctggtag atgtagtaga ggaggagcgc gctcgcgttg tcggggccgc cgcgcgtcat
     1501 gacgaagagg tggtcgacca tccgcaccga gttgatcagc gcgttgacga ggacgaagag
     1561 cgtcgtcggc atgaggagcg gaaagaggac gcgccggaag tactgcgccc gcgacgcgcc
     1621 ttcgagcgcc gccgcttccg ccagcgacgg cgggatctgc tgcagcgcgg cgaggtagaa
     1681 gatcatgaag aagccggcct ccttccagac cgcgacgacg atgatcgcgc cgagcaccgt
     1741 gtgcttgtcg ccgagccagt tgtggctcgg caggccgagc gcctgcgtga tctgctcgag
     1801 caggccgtac tgcggcgtgt agaagaagag ccagatgttg gcgacggcga tcatcggcag
     1861 caccgtcggc gtgaagtacg cgaggcgcag gaggccgcga ccgcggatgc ggctgttgac
     1921 ccagagcgcc atcgcgatcg ccagcgcgat cgagagcggg atcgtgccga cggcgtagat
     1981 cacgttgttc gtgagcgcct gccagaagac ctcgtcctcg accatgccgc ggtagttgtc
     2041 gatgccgatg aagtgcgccg ggcggccctt cttcggcgtc gacaggaagc tgtcccacac
     2101 cgtcgccagc gccggccagt gcgtgaaggc gacgagcagc gtcagcgccg gcagcagcag
     2161 cagccacggc gtgacgcggg cgcgaaagcc catcaatcga tccggtcgct gcgttccgtt
     2221 cgggcgacga ccgctacttc ttgaagtcct tgaggatgcg agtcgcctcg cgttgggcgt
     2281 cgcgcatcgc gtcggccggc ggcttcgatc cggtgagcgc cgcctgcagc ccgttgttga
     2341 gcgccgtcgt gacgcgctgg ttgtcgtggg tcgagagctc ggcgaccgag tactgcagct
     2401 ggtcgcgagc gaccagcgcc tgcggcacct cctgcgcgta cttcttcatc tccggcgtgt
     2461 cccacgccgc cggcgtgacc gcgacgtagc cggtggcgat gctccactgc gcggcgcgct
     2521 gcggcgccgt cgcccacttg atgaagcgca gcgacgcctg ctgctcggcc ggcgtcgtct
     2581 tggcgaagac gtagaagttg ccgcctcccg tcgggctgcc gggatgcttc ttggccggca
     2641 gcatggcgac gccgaacgga aagcccgcgt tggcgcggat gttggtgagg ttgccggtcg
     2701 tcgtccagat catcgccgcc ttcttctcga agaagtcctt cggcgtcgtt ccccattcga
     2761 tcacgccggc cggcatcacc ttgtgcctgg ccgagaggtc gacccagtac tgcagcgctt
     2821 cgatcaccgc cggcttgtcg aagtaggtct cggtgccggc gtcgttcatg agcagcacgt
     2881 cgttcggcgt cgtcaggccc tggaagagcc agtacggaaa gcccgacgac ggaatcttca
     2941 cgccccactg ggtgacgttg ccgctggcgt cggtcttggt cagcttcttg gcgaactcga
     3001 ccatctggtc ccagctcgcc gggcccttct cggggtcgag gccggcttcc ttgaacgcgt
     3061 ccttgttcca gtagaggacg atcgtcgagc gctggaacgg gacgccccag gtcttgccgc
     3121 cggtgcggct gttcatcatg aagctcttgt agaagccgtc gagccacttc ctgtcgtcgg
     3181 cgctcttggc gacgtcgtcg atcggcacga tcgcctcctc gtcgataagc gagaacatgt
     3241 cggtcgagag cagcaccgcg acctgcggcg gtttgccgct cttggtcgcg gtcagcacct
     3301 tgacgatgct ctcctggtag gtgcccgagt agaccgggtt gaccttgacg tcggggttct
     3361 ccttggagaa gtcggcggcc atctggtcga tcgtcttcgt caccgggccg ccgacggcga
     3421 ccggatagta gaagctgatc tcggtgacct tctgcgccgc ggccggcgcg gcggcggcga
     3481 tcgccgtggc ggcgaaggcg agggtcaggg ctcttttcat gcgtgtctcc ttgggtcgat
     3541 cggtcaaacg ggaacgggaa cgatgtcgtc gcgacggcgg cccgtcgcgt ggtcgaagta
     3601 atggctgtcc tcgg
//
LOCUS       DASVHM010000077         3758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1303831, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000077 DASVHM010000000
VERSION     DASVHM010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1303831"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1316
                     /locus_tag="VF308_01415"
     CDS             <1..1316
                     /locus_tag="VF308_01415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006835 - dicarboxylic acid transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HEX7435338.1"
                     /translation="YQSLYLQVITAIVIGVLLGHFYPQAGEAMKPLGDGFIKLIKMII
                     APIIFCTVVVGIAGMEDMKKVGKTGGLALLYFEIVSTVSLIVGLVIINLVQPGVGMNV
                     DPATLDTKNIAAYTGPGKMQGTVGFLLDIIPNTVVDAFAKGEILQVLLFSVLFGFALH
                     RFGGRGTLVFDVIEKGSHVLFAIVGFIMRAAPIGAFGAMAFTIGKYGIGSLLSLGKLM
                     ATFYVTCLFFIFVILGLIARLHGFSIWKFIKYIKEELLIVLGTSSSESVLPRMIAKME
                     NLGARKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNTPMTLTQQITLLAVLLLT
                     SKGAAGVTGSGFIVLAATLSAVGGVPVAGLALILGVDRFMSEARALTNLVGNGVATIV
                     VAHWTGDLDSARLRSQLDHETDVAADEPEAVLDQVRETFPAAHSG"
     gene            complement(1339..1503)
                     /locus_tag="VF308_01420"
     CDS             complement(1339..1503)
                     /locus_tag="VF308_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010463174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HEX7435339.1"
                     /translation="MLHYAVVFLVIALIAAVLGFGGIAAGAAGIAKILFIVFVILAIA
                     TFLFGRSRGG"
     gene            1750..3441
                     /locus_tag="VF308_01425"
     CDS             1750..3441
                     /locus_tag="VF308_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011516372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7435340.1"
                     /translation="MPARDVVPPPTPAASRPPRPAATLVVVRASENGFEVLLSRRAER
                     GDHNSGAWVFPGGLVDPGDRDAHDCSTGLDDAAASARLGVPAGGLDYYIAAVRECFEE
                     SGLLFATDARGALVELDDPAAARLAPWRGTLHRGERRLGEFCKELGIALAVDRLIYLS
                     HWITPLGRPKRFDTRFFLAVAPPVQTAAHDGTEMVEQLWLRPADALLESAALKLLTPT
                     LKTLELLGRFASLGALFEWAGSGRQVVLTVPRVGVGSQGMRPVLPEELAWAELGRIDP
                     EGRGTQSYEINPGVAVRLSPRVIRVSANNGSVMTGPGTNTYLVGGGPENEWAVIDPGP
                     LDDRHVQAVLDAAPGPIRWIFATHTHLDHSPATLSLQKRTGARVHGLVAAHPEWQDAS
                     FAPETLLRGGERIALPGGATLRAIHTPGHASNHLCYLLEEEKMLFTGDHVMQGSTVVI
                     NPPDGEMAAYVASLRELLEEDLEWLAPGHGFLMAEPKRAISWIIDHRLKREAKVIDAL
                     RAQSSATAEALLARVYDDVPERMHPVALRSLRAHLLKLQSDGAAHEAEGRWSLRS"
     gene            complement(3447..>3758)
                     /locus_tag="VF308_01430"
     CDS             complement(3447..>3758)
                     /locus_tag="VF308_01430"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX7435341.1"
                     /translation="PGAPPGGESAEAFRARVARAFARIVALCAGLDGDLAVVTHGLVI
                     GAMLEAHARLPDGAPMPSRLGNASLTILSAAPPHLVALLDSTAHLDAAVDDDPLSLSG
                     G"
BASE COUNT          610 a         1255 c         1269 g          624 t
ORIGIN      
        1 tctaccagtc gctgtatctc caggtcatca ccgccatcgt catcggcgtg ttgctgggcc
       61 acttctatcc gcaggccggc gaggcgatga agccgctcgg cgacggcttc atcaagctga
      121 tcaagatgat catcgcgccg atcatcttct gcaccgtcgt cgtcggcatc gccggcatgg
      181 aggacatgaa gaaggtcggc aagaccggcg gcctggcgct gctctacttc gagatcgtca
      241 gcaccgtttc gctcatcgtc gggctggtga tcatcaacct ggtgcagccc ggtgtgggca
      301 tgaacgtcga tccggcgacg ctggacacga agaacattgc cgcgtacacc ggcccgggca
      361 agatgcaggg caccgtcggg ttcctgctcg acatcattcc caacaccgtg gtcgatgcct
      421 tcgccaaggg cgagatcctg caggtgctgc tgttctcggt gctgttcggg ttcgcgctgc
      481 accgcttcgg cgggcgcggc acgctggtct tcgacgtcat cgaaaagggt tcgcacgtgc
      541 tgttcgcgat cgtcggcttc atcatgaggg ccgcgccgat cggcgcgttc ggcgccatgg
      601 cgttcacgat cggcaagtac ggcatcggct cgctcctgtc gctcggcaag ctgatggcga
      661 ccttctatgt cacgtgcctt ttcttcatct tcgtgatcct gggcctcatt gccagattgc
      721 atggcttttc gatctggaag ttcatcaagt acatcaagga agaactgctg atcgtgctcg
      781 gcacctcgag cagcgaatcg gtgctgccgc gcatgattgc gaagatggag aatctgggcg
      841 cccgcaagtc cgtggtcggc ctcgtgattc cgaccggcta ctcgttcaac ctcgacggca
      901 cctcgatcta cctgacgatg gctgcggtct ttatcgccca ggcgacgaac acgccgatga
      961 ccctgacgca gcagatcacc ttgctcgcgg tgctgctgct gacatcaaag ggcgcggccg
     1021 gggtcaccgg cagcggcttc atcgttctcg cggcgacgct ctcggcggtc ggcggcgttc
     1081 cggtcgcggg cctcgccctg attctcggcg tcgatcgctt catgtcggaa gcgcgcgcgc
     1141 tgacgaacct cgtcggcaac ggggtcgcaa cgatcgtggt ggcgcactgg acgggcgacc
     1201 tcgacagcgc acgcctgcgc agccagctcg accacgaaac cgatgtcgcg gccgacgagc
     1261 ccgaggcggt gctggaccag gtccgagaga cctttcccgc ggcccactcg ggttgacgac
     1321 cgcggcgccg cggagcagtc agccgcccct gctgcggccg aataggaacg tcgcgatggc
     1381 caggatcacg aagacgatga agaggatctt ggcgatgcct gcggcgcccg cggcgatgcc
     1441 gccgaagccg agcaccgcgg cgatcagggc gatcaccaga aacacaacag cgtagtgaag
     1501 catgtcgatt ctcctgaaga gagtgccgca tcggggttgc ggaaggtcgc aactgtgccg
     1561 gcggcatggc ttgaatcatt ggccctcggc gggcaaagcg cgataggcgc tcgggctgcc
     1621 cgtctgtcgg gcggcgccgc cgagatggcg taagacggcg ctgacggctg gtgcaagacc
     1681 gcgcgactgc agaaacgggc cctgcatgcc aaacttccgc cttgcccctg cgaatccgat
     1741 cggttttcga tgccagcacg cgacgtcgtc ccccctccga ccccggcagc cagccgcccg
     1801 cctcggccgg cggccacctt ggtcgtcgtc cgcgcgtcgg aaaacggatt cgaggtgctg
     1861 ctctcgcgcc gtgccgagcg cggcgatcac aacagcggtg cgtgggtatt tcccggcggc
     1921 ctggtcgatc cgggcgatcg cgacgcgcat gactgcagca ccggcctcga cgacgcggcg
     1981 gcgagcgcac ggctcggtgt gcccgccggc gggctcgact actacatcgc tgccgtgcgc
     2041 gaatgcttcg aggaatcggg tctcctcttc gcgaccgacg cgcgcggcgc cctcgtcgaa
     2101 ctcgacgacc ccgcggcggc acggttggcg ccgtggcgcg gcaccctgca tcgtggcgag
     2161 cgccgcctcg gcgagttctg caaggagctc ggcatcgcgc tggctgtcga ccggctgatc
     2221 tatctcagcc attggatcac cccgctcggg cggccgaagc gcttcgacac gcgcttcttc
     2281 cttgccgtgg caccgcccgt gcagaccgcc gcgcacgacg gcaccgaaat ggtcgagcaa
     2341 ctgtggctgc ggccagccga cgcattgctg gaaagcgcgg ccctgaaact gctgacgccg
     2401 acgctgaaga cgctcgaatt gctgggccgg tttgcgagtc ttggcgcgct cttcgaatgg
     2461 gccggctcgg gtcgccaggt ggtgctgaca gtgccgcgcg tgggcgtcgg cagccagggc
     2521 atgcggccgg tgcttcccga ggagctggcc tgggccgagc tcggccgaat cgatcccgaa
     2581 ggccgaggca cgcagtcgta cgaaatcaac ccgggtgtgg ccgtgcgcct ctcgccgcgc
     2641 gtcatccggg tcagtgcgaa caatggcagc gtgatgaccg gtccgggcac gaacacctat
     2701 ctcgtcggcg gcgggcccga gaacgagtgg gccgtcatcg accccggacc gctcgacgac
     2761 cggcacgtgc aggcggtgct cgacgcggca cccgggccga tccgctggat ctttgcgacc
     2821 cacacgcacc tcgaccattc acccgccacg ctgtcgctac agaaacgcac cggcgcgcgg
     2881 gtgcatgggc tcgtcgccgc gcatccggag tggcaggacg cgagctttgc gcccgaaacc
     2941 ctgctgcgcg gcggcgagcg catcgcactg ccgggcggcg caacgctgcg cgcgatccac
     3001 acccccggcc acgcgtcgaa tcacctgtgc tacctgctcg aggaagagaa gatgctcttc
     3061 acgggcgacc atgtgatgca gggctcgacc gtcgtcatca acccgccaga cggcgagatg
     3121 gcggcctatg tggcctcgct gcgcgaactg ctcgaagaag acctcgagtg gcttgcgccg
     3181 ggtcacggct tcctgatggc cgagccgaag cgagccatct catggatcat cgaccatcgt
     3241 ctcaagcgcg aagcgaaggt gatcgatgcg ttgcgcgcgc aatcatccgc gacggccgag
     3301 gcgctgctcg ctcgcgtcta tgacgacgtg ccggagcgca tgcatccggt cgcgctgcgc
     3361 tcgctgaggg cacacctttt gaagctgcaa agcgacggtg cggcgcacga ggccgaaggt
     3421 cgctggtcgt tgcgatcctg atccgttcaa ccgcccgaaa ggctgagcgg gtcgtcgtcg
     3481 acggcggcgt cgaggtgcgc tgtggaatcg agcagggcga cgaggtgggg cggagccgct
     3541 gacaggatcg tcagggacgc gttgccgagc cgcgacggca tgggagcgcc gtccggcagg
     3601 cgcgcatggg cctcgagcat cgcgccgatg acgaggccgt gcgtgaccac ggcgagatcg
     3661 ccatcgaggc cggcgcacaa ggcgacgatg cgcgcgaacg cgcgcgccac cctggctcga
     3721 aacgcctcag ccgattcgcc gcctggcggc gcaccggg
//
LOCUS       DASVHM010000078         2154 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_221482, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000078 DASVHM010000000
VERSION     DASVHM010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221482"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /locus_tag="VF308_01435"
     CDS             <1..402
                     /locus_tag="VF308_01435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysM domain-containing protein"
                     /protein_id="HEX7435342.1"
                     /translation="KVGSTLLVPRTRGRLADVSLRVADNAMMELAPDAPALKKLSLKA
                     GRLDSVASVARRYHLSAAQVAQWNDMAPAATFKPGQTVLVYVAAKGHGARAIRTAQAA
                     PKQHAVGHAKVARSATAERIARKGVRVAHNN"
     gene            complement(417..1004)
                     /gene="recR"
                     /locus_tag="VF308_01440"
     CDS             complement(417..1004)
                     /gene="recR"
                     /locus_tag="VF308_01440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HEX7435343.1"
                     /translation="MAEASLDSLIEALRRLPGVGVKSAQRMAFHLLQHDREGARRIAA
                     SLQAAVANVRHCERCHTFTEAAVCGICANPARDARQLCVVETPADQAALERTASYHGL
                     YFVLMGRLSPLDGVGPDELGAQQLLDRAGDGIVEEVIIATNFTAEGEATAHVLSQALK
                     SRGVRVTRLARGVPIGSELEYVDLGTIAHALGERR"
     gene            complement(1063..1389)
                     /locus_tag="VF308_01445"
     CDS             complement(1063..1389)
                     /locus_tag="VF308_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEX7435344.1"
                     /translation="MMKGQIAGLMKQAQAMQDNMKRAQEELASIEVEGQSGAGLVKVT
                     MTCKHDVKRIHIDPSLLGDDKDMLEDLIAAAFNDGVRRAEEVSQQKMGKLTAGMALPP
                     GMKLPF"
     gene            complement(1409..1978)
                     /locus_tag="VF308_01450"
     CDS             complement(1409..1978)
                     /locus_tag="VF308_01450"
                     /inference="COORDINATES: protein motif:HMM:NF023592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau C-terminal
                     domain-containing protein"
                     /protein_id="HEX7435345.1"
                     /translation="MRTVEVSAPALRAQTATMPTRERRSGERATREPPPWVDAPAIAE
                     IVEPNVPAAPIATELGDRWAEVVQRMIAASSIVALVRELALQAQCVAIDEVAPVPVWR
                     LRVERETLRAPAQCEKLQAALSELLGRAVRIEIEAGVADDTPARRDAAERARRQAEAE
                     QTIQNDPLVQALMAQYKTARIVPGSVKSL"
BASE COUNT          305 a          777 c          736 g          336 t
ORIGIN      
        1 aaggtcggct cgaccctgct cgtgccgcgg acccgggggc gcctggccga cgtctcgctg
       61 cgcgtcgccg acaacgcgat gatggagctc gcgccggatg cgcctgcgct gaagaagctg
      121 tcgttgaagg cgggacggct cgacagcgtc gcatcggtcg cgcggcgcta ccacctcagc
      181 gccgcgcagg ttgcgcaatg gaacgatatg gcaccggccg cgaccttcaa gcccggccag
      241 acggttctgg tctacgtggc cgcgaagggc catggcgcgc gcgccatccg gaccgctcaa
      301 gccgcgccga agcagcatgc cgtgggccac gccaaggtcg cgcgcagcgc cacggccgaa
      361 cggatcgccc gcaagggcgt tcgcgtcgcc cacaacaatt gacccgcgat ccgctctcag
      421 cgccgctcgc cgagggcgtg ggcgatcgtg ccgaggtcga cgtactcgag ttcgctgccg
      481 atcggcacac cgcgtgccag tcgcgtgacg cgaacgccgc gcgacttcag ggcctgcgac
      541 agcacatgcg cggtggcctc gccctcggcg gtgaagttgg tcgcgatgat gacttcctcg
      601 acgatgccat cgccggcgcg gtcgagcagt tgttgtgcac cgagctcgtc cgggccgacg
      661 ccgtcgagcg ggctgagccg gcccatcagc acgaaataga gcccgtggta gctggcggtg
      721 cgctcgagcg cggcctggtc ggccggcgtc tcgacgacgc acaactggcg cgcgtcgcgc
      781 gccggattgg cgcagatgcc gcacaccgcc gcttcggtga aggtgtggca gcgctcgcaa
      841 tggcgcacgt tcgcgaccgc cgcctgcagc gacgcggcga tccggcgcgc gccctcgcgg
      901 tcatgctgga gcaggtggaa ggccatgcgc tgggccgact tgacgccgac tccgggcagc
      961 cgccgcaggg cctcgattag cgagtcgagc gaagcttcag ccacggttgc cttgcccttc
     1021 agccggcacg tcgattccga acgcagcgcg gcacgctgcg cgtcagaacg gcagcttcat
     1081 gccgggcggc agggccatcc ccgcggtcag cttgcccatc ttctgctggc tcacttcctc
     1141 ggcacgccga acgccgtcgt tgaacgcggc ggcgatcagg tcttcgagca tgtccttgtc
     1201 atcgccgagc aagctcgggt cgatgtggat ccgcttgacg tcgtgcttgc aggtcatcgt
     1261 gaccttgacg agtccggcgc cggactgacc ctcgacctcg atcgacgcga gctcttcctg
     1321 agcccgcttc atgttgtcct gcatcgcctg cgcctgcttc atcagccccg cgatctgacc
     1381 cttcatcatg gtgtgtgctc ctcaatgttc aaagcgactt gaccgacccg ggcacgatgc
     1441 gtgccgtctt gtactgcgcc atcagcgcct gcacgagcgg gtcgttctgg atggtttgct
     1501 cggcctcggc ctgccgccgc gcacgctcgg cggcatcccg gcgggccggc gtgtcgtcgg
     1561 cgacgccggc ctcgatctcg atgcgcacgg cgcggccgag aagttccgag agggcggcct
     1621 gcagcttctc gcattgcgcc ggcgcgcgca gcgtttcgcg ctccacccgc aagcgccaca
     1681 ccgggaccgg ggcgacctcg tcgatcgcca cgcactgcgc ctgcagcgcg agctcgcgca
     1741 ccagggcgac gatgctcgac gcggcgatca tgcgctgcac gacctcggcc cagcggtcgc
     1801 ccagttccgt cgcgatcggc gcggccggca cattcggttc gacgatctcc gcgatggcgg
     1861 gcgcatccac ccacggcggc ggctcccgcg tcgctcgttc cccgctccgt cgctcgcggg
     1921 tcggcatggt tgcggtctgt gcccggagcg caggcgcgct cacctcgacg gtgcgcacgg
     1981 gaggcttcgc agaccgcgcc ggcccaagcg cggcccgcga acccgcggca ggcggcggga
     2041 acgccagcat gcgcagcaac accatgacga gcccgctgta ctcgtcgggg gcgagcccga
     2101 gctcggcgcg cccatgcaac acgatgctgt agagcaactg gatttcatcg ggct
//
LOCUS       DASVHM010000079         5132 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1231187, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000079 DASVHM010000000
VERSION     DASVHM010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5132
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1231187"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            165..341
                     /locus_tag="VF308_01455"
     CDS             165..341
                     /locus_tag="VF308_01455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435346.1"
                     /translation="MTAATTGSAFEHREAAAGPDWATLNLVGESRAFRAVLTLLQQWA
                     KVDATVVLRGGASG"
     gene            290..631
                     /locus_tag="VF308_01460"
     CDS             290..631
                     /locus_tag="VF308_01460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435347.1"
                     /translation="MGQGRCHGRAARRRIGLIGVDFTEHHFFAKTGRHPLAGRLAQID
                     REYGALADALGRRGIEFVNLSATSRLQSPPRARLADFDEPALAPRPAAGFSSSTRATR
                     AGMATTTSRSA"
     gene            843..1793
                     /locus_tag="VF308_01465"
     CDS             843..1793
                     /locus_tag="VF308_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX7435348.1"
                     /translation="MNLTQLTYFIRVAEMGSFSKAAIVLDVAQPALSRQVRLLETDLR
                     TTLLQRTGRGVVLTDAGKRLFEHSVGILQLVARAREDLEATREEPTGRIIVGLPPSMG
                     RLLTLPLVDEFKRVLPKARLAIVEGLSTHIVEWISTGRVDLGLVHNPGANPAIDTTPV
                     LDEPLWLVSAAAKGRRATTPRVSRPLPFAELAGFPLIVPERTHAIRKLLETQAALSGM
                     KLQIAWEVSSVQSILDLVRHGHGHAVLARSAVLASDQPKAFDMRPLAEAELKSTLCLA
                     VSAHKPVTPLVKRVDRMLRELLLARVAGPVAPSKSHNNLR"
     gene            1896..3002
                     /locus_tag="VF308_01470"
     CDS             1896..3002
                     /locus_tag="VF308_01470"
                     /EC_number="5.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013801812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalomesaconate tautomerase"
                     /protein_id="HEX7435349.1"
                     /translation="MQTPIPCLFMRGGTSRGPFFKAADLPAEIATRDRVLLAVMGSPD
                     RRQIDGLGGAHPLTSKVGIVSPGSKPGVDLDFLFAQLQPDKDTIDTTPNCGNMLAAVV
                     PFALETGMVEPQGDTTTLRVLTLNTDMQCDVTVRTPGGGVEYAGDARIDGVPGSSAPI
                     TINFLDTAGSVCSGLLPTGKVRDTVTVEGVGTLDVTCIDNGMPLVMLHAADLGRTGYE
                     TVAELNADTELKTKLEALRLHCGHLMGLGDVTKKTYPKMTLIAPPRHGGSLSTRSFIP
                     HVCHDAIGVLAAVTVGTACVLEGSVTQGIAVMPGGNTKKVSVEHPTGEFSVELEIDPA
                     NPQNATRAALLRTARLIMRGEVMIPASVWNGDTK"
     gene            2999..4024
                     /locus_tag="VF308_01475"
     CDS             2999..4024
                     /locus_tag="VF308_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013541011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX7435350.1"
                     /translation="MIIDCHGHYTTAPKALENWRNQQIAGIKDPAAMPKVADLKISDD
                     ELRESIETNQLKLMRRRGSDLTIFSPRASFMAHHIGDFAVSSTWSAICNELCYRVSGL
                     FPDNFIPAAMLPQSPGVDPKTCIPELEKCVREYGNVGINLNPDPSGGHWTSPPLSDRH
                     WYPIYEKMVEHDIPAMIHVSTSCNACFHTTGAHYLNADTTAFMQCLTADLFKDFPTLR
                     FIIPHGGGAVPYHWGRFRGLAQELKKPLLKDHLLNNIYFDTCVYHQPGIDLLTKVIPV
                     KNILFASEMIGAVRGIDPETGQYYDDTKRYIEAARIDPVQRDAIYEGNARRVFPRLDA
                     ALKQKGL"
     gene            4027..4722
                     /gene="ligK"
                     /locus_tag="VF308_01480"
     CDS             4027..4722
                     /gene="ligK"
                     /locus_tag="VF308_01480"
                     /EC_number="4.1.1.112"
                     /EC_number="4.1.3.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047443 -
                     4-hydroxy-4-methyl-2-oxoglutarate aldolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-carboxy-4-hydroxy-2-oxoadipate
                     aldolase/oxaloacetate decarboxylase"
                     /protein_id="HEX7435351.1"
                     /translation="MSTPMNNLGIVKRNIVRADRAAVEKLARFGVATIHEAMGRAGLM
                     KPYMRPIYPGAQICGTAVTVLLQPGDNWMMHVAAEQLQPGDVAVAACTTDNEDGFFGD
                     LLATSFQARGAKGLIIDGGVRDVAELEKMNFPVFSRAIHAKGTIKATLGSVNIPVVCA
                     GAVVNPGDVVVADADGVVVVPAAIAGQVADAAEKRESFEGEKRAKLAAGVLGLDMYSM
                     REPLEKAGLKYID"
     gene            4740..>5132
                     /locus_tag="VF308_01485"
     CDS             4740..>5132
                     /locus_tag="VF308_01485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013801233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX7435352.1"
                     /translation="MSAATSALNWHVGLVGYGEVGRILAEDLRALGVRVSAFDLKLAG
                     PDGDAMRDHATTHGVALVATHAALAAPADLIVSAVTASQAVPVATTCAPALRRGAFFL
                     DLNSASPGAKIRAAAQVDGAGGRYIEGAV"
BASE COUNT          864 a         1828 c         1698 g          742 t
ORIGIN      
        1 gatctgcatc gccggcgtcg aagcggccgg actgattcac gcctgatcgg gaaggctcga
       61 cgcactcggg ccgctccact caactgggga ttgagcccgc cggaacggcg tcttagactc
      121 cgcttacggc gcgttcgcga agctgttgcg ccaagggggt gccagtgact gcagcgacga
      181 caggcagtgc gttcgagcat cgtgaggcgg cggcggggcc ggattgggcc acgctcaacc
      241 tcgtcggcga atcgcgcgca ttccgcgcgg tgctgacact gctgcagcaa tgggccaagg
      301 tcgatgccac ggtcgtgctg cgcggcggcg catcgggctg atcggcgtcg acttcaccga
      361 gcaccacttc ttcgcgaaga ccggcaggca tcctctggcc gggcgcctcg cgcagatcga
      421 ccgcgagtac ggcgcgctcg ccgatgccct gggcaggcgc ggcatcgaat tcgtcaacct
      481 cagtgcgacc agtcgcctgc aaagcccgcc gcgcgcccgc ctggcggact tcgacgagcc
      541 ggcgctcgca ccccggcccg cggcgggttt cagctcttcg acgcgcgcta caagagctgg
      601 tatggcgacg acgacttcgc gttccgcgta gcccaaagcg gctaccagat ccaccgcgtg
      661 atcgggctgc cgtgcgacca cctcaacgag gcgagcatgc accatcggcc cgacctgatg
      721 gcgcagcgcg aggccggtcg ccagctgttc atcgcgcagt ggggcgacgt gtaagggcca
      781 aggtctggag cggctgtcga taatccgcgc agcgccccac gactccgatc ccggcccgcg
      841 ccatgaatct cacccagctc acctacttca tccgcgtcgc cgagatgggc agcttcagca
      901 aggccgcgat cgtgctcgac gtggcccagc ccgccctgag ccgacaggtg cgcctgctcg
      961 aaaccgacct gcgcacgact ttgctgcagc gcaccggccg tggcgtggtg ctcaccgatg
     1021 ccggcaagcg cctgttcgag cacagcgtcg gcatcctcca gctggtggcg cgagcgcgcg
     1081 aagacctcga ggcgacgcgc gaggagccga ccggtcgcat catcgtgggc ctgccgccga
     1141 gcatgggccg gctgctgacg ctgccgctcg tcgacgaatt caaacgcgtg ctgccgaagg
     1201 cgcgcctggc gatcgtcgaa gggctgtcga cgcacatcgt cgaatggatc tcgaccgggc
     1261 gtgtcgacct cggtctggtg cacaacccgg gcgccaatcc ggcgatcgac acgacgccgg
     1321 tgctcgacga gccgctctgg ctggtcagcg ccgccgccaa gggccggcgc gccacgacgc
     1381 cgcgcgtgtc gaggcctctg ccgttcgccg agctggcggg cttcccgttg atcgtgcccg
     1441 agcgcacgca cgcgatccgc aagctgctcg agacccaagc cgcgctcagc ggcatgaagc
     1501 tgcagatcgc ctgggaggtg tcgagcgtgc agtccatcct cgacctggtg cgccacggcc
     1561 acggccacgc cgtgctggcg cgcagcgcgg tgctggcctc cgaccagccg aaggccttcg
     1621 acatgcggcc gctggccgaa gcggagctga agagcacgct gtgcctggcc gtctcggcgc
     1681 acaagccggt cacgccgctg gtgaagcggg tggatcggat gttgcgcgag ctgctcttgg
     1741 cgcgcgtggc gggtcccgtg gcaccctcga agagccataa caatctgcga tagctgctag
     1801 cgtcgcggct ccattgccgc ggcctggccg tttcgccaga atccaaggct cccctcccca
     1861 tgacgcgccc cgagctgcgc accgaggtgc ccacgatgca gaccccgatt ccctgcctgt
     1921 tcatgcgcgg cggcacgtcg cgcgggccgt tcttcaaggc cgccgacctg cccgccgaga
     1981 tcgcgacgcg cgaccgcgtg ctgctcgcgg tcatgggctc gcccgaccgg cgccagatcg
     2041 acggcttggg cggagcccac ccgctgacca gcaaggtcgg catcgtcagc ccgggctcga
     2101 agcccggcgt cgacctcgac ttcctgttcg cgcagctgca gcccgacaag gacacgatcg
     2161 acaccacgcc gaactgcggc aacatgctcg ccgcggtggt gcctttcgcg ctcgagaccg
     2221 gcatggtcga accgcagggc gacacgacga ccttgcgcgt gctcacgctc aacaccgaca
     2281 tgcagtgcga cgtgaccgtg cgcacgcccg gcggtggcgt cgaatacgcc ggcgacgcgc
     2341 gcatcgacgg cgtgccgggc agctcggcac cgatcacgat caacttcctc gacaccgccg
     2401 gctcggtgtg ctcgggcctg ctgccgaccg gcaaggtgcg cgacaccgtc accgtcgaag
     2461 gcgtcggcac gctcgacgtg acctgcatcg acaacggcat gccgctcgtg atgctgcacg
     2521 ccgccgacct cggccgcacc ggctacgaga cggtggccga gctgaacgcc gacaccgaac
     2581 tgaagacgaa gctcgaggcg ctgcgcctgc attgcggcca tctgatgggc ctgggcgacg
     2641 tgaccaaaaa gacctatccg aaaatgacgc tgatcgcgcc gccgcggcac ggtggcagcc
     2701 tgagcacccg cagcttcatt ccgcacgtgt gccacgacgc gatcggcgtg ctcgcggccg
     2761 tgaccgtggg cacggcctgc gtgctcgaag gttcggtcac acagggcatc gccgtgatgc
     2821 ccggcggcaa caccaagaag gtctcggtcg agcacccgac cggcgagttc agcgtggagc
     2881 tcgaaatcga tccggccaac ccgcaaaacg ccacccgcgc cgcgctgctg cgcacggcgc
     2941 ggctcatcat gcgcggagag gtgatgatcc cggcatctgt ttggaatggg gacacgaaat
     3001 gatcatcgat tgccacggcc actacaccac cgcgcccaag gcgctggaga actggcgcaa
     3061 ccagcagatt gccggcatca aggacccggc cgcgatgccg aaggtcgcag acctgaagat
     3121 cagcgacgac gagctgcgcg agtcgatcga gaccaaccag ctcaagctga tgaggcggcg
     3181 cggcagcgat ctgacgatct tctcgccgcg cgccagcttc atggcgcatc acatcggcga
     3241 cttcgccgtg tcgtcgacct ggtcggccat ctgcaacgag ctgtgctacc gcgtgagcgg
     3301 gctcttcccc gacaacttca tccccgcggc gatgctgccg cagtcgccgg gtgtcgatcc
     3361 gaaaacgtgc atccccgaac tggagaaatg cgtcagggag tacggcaacg tcggcatcaa
     3421 cctgaatccc gatccgtcgg gcgggcactg gacctcgccg ccgctgtccg accgccactg
     3481 gtacccgatc tacgagaaga tggtcgagca cgacatcccg gcgatgatcc atgtcagcac
     3541 gagctgcaac gcctgcttcc acaccaccgg cgcgcactac ctgaacgccg acaccacggc
     3601 cttcatgcag tgcctgaccg cggacctgtt caaggacttc ccgacgctgc gcttcatcat
     3661 cccgcacggc ggcggcgcgg tgccctacca ctgggggcgc ttccgcggcc tggcgcagga
     3721 gctgaagaag ccgctgctca aggaccacct gctgaacaac atctacttcg acacctgcgt
     3781 ctaccaccag ccgggcatcg acctgctgac gaaggtgatc ccggtgaaga acatcctgtt
     3841 cgccagcgaa atgatcggcg cggtgcgcgg catcgacccc gagaccggcc agtactacga
     3901 cgacacgaag cgctacatcg aggcggcgcg catcgacccc gtgcagcgcg acgcgatcta
     3961 cgaaggcaat gcgcggcgcg tgttcccgcg actggatgcc gccctgaagc aaaaaggact
     4021 ctgaacatgt cgaccccgat gaacaacctc ggcatcgtca agcgcaacat cgtgcgcgcc
     4081 gaccgcgcgg cggtcgagaa gctggcgcgc ttcggcgtgg ccaccatcca cgaggcgatg
     4141 ggccgcgccg gcctgatgaa gccctacatg cgaccgatct atccgggtgc gcagatctgc
     4201 ggcacggccg tgacggtcct gctgcagccg ggcgacaact ggatgatgca cgtcgccgcc
     4261 gagcagctgc agcccggcga cgtggcggtg gccgcctgca ccaccgacaa cgaggacggc
     4321 ttcttcggcg acctgctggc cacctcgttc caggcccgcg gcgcgaaggg cctgatcatc
     4381 gacggcggcg tgcgcgacgt ggccgagttg gagaagatga acttcccggt gttcagccgc
     4441 gcgatccacg ccaagggcac gatcaaggcg acgctgggct cggtcaacat tccggtggtc
     4501 tgcgccggcg cggtggtgaa cccgggtgac gtcgtcgtcg ccgacgccga cggcgtggtc
     4561 gtcgtgcccg ccgcgatcgc cggccaggtg gccgacgccg ccgagaagcg cgagtccttc
     4621 gagggcgaga agcgcgccaa gctcgccgcc ggcgtactcg gcctggatat gtacagcatg
     4681 cgcgagccgc tcgagaaggc cggcctgaag tacatcgact gaatcgcgtc gaggcagcga
     4741 tgagcgcagc aacctcagcc ctgaactggc atgtcggcct cgtcggctac ggcgaggtcg
     4801 ggcgcatcct ggccgaagac ctgcgcgcgc tcggcgtgcg cgtcagcgcc ttcgacctca
     4861 agctcgccgg tccggacggc gatgcgatgc gcgatcacgc cacgacgcac ggcgtcgcgc
     4921 tcgtcgcaac gcacgccgcg ctcgccgcgc cggcggacct gatcgtctcg gcggtcaccg
     4981 cgagccaggc cgtgccggtg gcgacgacct gcgccccggc gctgcgccgc ggcgccttct
     5041 tcctcgacct caactcggcc tcgcccggcg ccaagatccg cgccgcggct caggtcgatg
     5101 gcgccggcgg ccgctacatc gagggcgcgg tg
//
LOCUS       DASVHM010000080         1857 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_77804, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000080 DASVHM010000000
VERSION     DASVHM010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1857
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77804"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(57..929)
                     /locus_tag="VF308_01490"
     CDS             complement(57..929)
                     /locus_tag="VF308_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019425511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7435353.1"
                     /translation="MPYQSVFRDGIFAGQVVIVTGGGSGIGRCTSHELAALGAHVALI
                     GRTLEKLEAVKAEIVEDGGSASAHACDIRDEAAVGQTIDAVLQARGRLDGLVNNAGGQ
                     YRTAMKTISTKGFEAVVRSNLTGGFIFMREAYNRWMGEHGGTIVNIIADIWNGWPDFA
                     HSGAARGGMLTLTETAACEWAVSGVRVNTVAPGGIASSGFDTYAPEAKAKILEYPKTV
                     PLQRYGTEAEVSAAIVYLLSPAAAFITGSCIRVDGGTPNARNTWQLEASDRSRPFQGF
                     HRSKLPELLKTGGG"
     gene            complement(946..>1857)
                     /locus_tag="VF308_01495"
     CDS             complement(946..>1857)
                     /locus_tag="VF308_01495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEX7435354.1"
                     /translation="ACWGDVAMVLSMPRQGLGNAAIASVANDEQLERFDHLWAAMAIT
                     EPGFGSDSAAVQATAIPDGDDYVINGEKTSITFADRADAYLIFARTGRADEGAKGVTA
                     FFIPYTSKGISRTKFDDVGSAIIGRGSVFFDDVRVPMSHRIGDEGKGFTQVMQGFDYS
                     RALIALQCCGAAQASLDEAWAYAKEREAFGKPIGQFQGVSFPLAEGESQIAAVRQLSY
                     HALALRDAGLPHTAEAAMVKWMGPKNAFDVIHQCLLTCGHYGWSKDLPHQQRMRDVMG
                     LEIGDGTAQVMKLIIARERIGRAAVQY"
BASE COUNT          260 a          656 c          637 g          304 t
ORIGIN      
        1 cgggccggcc gtggcgcacg agcacgatct tcatcggcgc gtccctccgg ccggcctcag
       61 ccgccgcccg tcttcagcag ctcgggcagc ttggaccggt ggaagccctg gaacggccgg
      121 ctgcgatcgc tcgcctcgag ctgccaggtg ttgcgcgcat tcggcgtgcc gccgtcgacg
      181 cggatgcacg agccggtgat gaacgccgcc gccggcgaca gcagatagac gatggccgcg
      241 gacacctcgg cctcggtgcc gtagcgctgc aacggcacgg tcttcggata ttcgaggatc
      301 ttcgccttcg cttcgggtgc gtaggtgtcg aagccgctcg aggcgatgcc gcccggcgcg
      361 accgtgttga cgcgcacgcc cgagaccgcc cattcgcacg ccgccgtctc ggtcagcgtc
      421 agcatgccgc cgcgcgccgc gcccgagtgc gcgaagtcgg gccagccgtt ccagatgtcg
      481 gcgatgatgt tgacgatcgt gccgccgtgc tcgcccatcc agcggttgta cgcctcgcgc
      541 atgaagatga agccgccggt caggttgctg cgcacgaccg cctcgaagcc cttggtcgag
      601 atcgtcttca tcgccgtgcg gtactgaccg ccggcgttgt tgacgaggcc gtcgaggcgc
      661 ccgcgcgcct gcagcaccgc gtcgatcgtc tggcccaccg ccgcctcgtc gcggatgtcg
      721 caggcgtgcg cgctcgcgct gccgccgtcc tcgacgattt cggccttcac cgcctcgagc
      781 ttctcgagcg tgcgcccgat cagcgcgacg tgcgcgccga gcgcggcgag ttcgtgcgac
      841 gtgcagcggc cgatgccgct gccgccgccg gtgacgatga ccacctggcc ggcgaagatg
      901 ccgtcgcgaa acaccgattg ataaggcatt gcctcctcct ccgattcaat actgcaccgc
      961 ggcgcggccg atgcgctcgc gcgcgatgat cagcttcatc acctgcgcgg tgccgtcgcc
     1021 gatctcgaga cccatcacgt cgcgcatgcg ctgctggtgc ggcaggtcct tcgaccagcc
     1081 gtagtggccg caggtgagca ggcactggtg gatgacgtcg aaggcgttct tcggccccat
     1141 ccacttcacc atcgcggcct cggccgtgtg cggcaggccg gcgtcgcgca aggccagcgc
     1201 gtggtacgag agctggcgca ccgcggcgat ctgcgactcg ccctcggcga gcggaaagct
     1261 cacgccctgg aactggccga tcggcttgcc gaacgcctcg cgctccttcg cgtaagccca
     1321 ggcttcgtcg agcgaggcct gcgcggcgcc gcagcactgc agcgcgatca gcgcacggct
     1381 gtagtcgaag ccctgcatca cctgcgtgaa gcccttgccc tcgtcgccga tgcggtggct
     1441 catgggcacg cgcacgtcgt cgaagaagac cgagccgcgg ccgatgatgg cgctgccgac
     1501 atcgtcgaac ttggtgcgcg agatgccctt gctcgtgtac gggatgaaga aggccgtgac
     1561 gcccttcgcg ccttcgtcgg cgcggccggt gcgggcgaag atcaggtagg cgtcggcgcg
     1621 gtcggcgaaa gtgatcgagg tcttctcgcc gttgatgacg tagtcgtcac cgtcgggaat
     1681 tgcggtggcc tggaccgcgg ccgagtccga gccgaagccg ggctcggtga tcgccatcgc
     1741 ggcccacagg tggtcgaagc gctcgagctg ctcgtcgttg gccaccgacg cgatcgccgc
     1801 gttgccgagt ccctggcgcg gcatcgagag caccatcgcg acgtcgcccc agcatgc
//
LOCUS       DASVHM010000081         3985 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1087053, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000081 DASVHM010000000
VERSION     DASVHM010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3985
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1087053"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VF308_01500"
     CDS             complement(<1..331)
                     /locus_tag="VF308_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427760.1"
                     /note="catalyzes the formation of oxalozcetate and
                     L-glutamate from L-aspartate and 2-oxoglutarate; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEX7435355.1"
                     /translation="MRPIIEELPGSKIREVANAGLGRADVLAFWFGESDEPTPEFIRV
                     AAVRSLQDGETFYAHNLGLPELRDALAGYVNALHRPVTSRRIAVTSSGVSALMLATQA
                     LVGAGDEV"
     gene            491..613
                     /locus_tag="VF308_01505"
     CDS             491..613
                     /locus_tag="VF308_01505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435356.1"
                     /translation="MSLPTARRGAARYARTVALPAEVDQAASQVPTGALQISVS"
     gene            complement(618..1652)
                     /gene="tsaD"
                     /locus_tag="VF308_01510"
     CDS             complement(618..1652)
                     /gene="tsaD"
                     /locus_tag="VF308_01510"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEX7435357.1"
                     /translation="MNVLGIESSCDETGVALVRTDGSSAPPRLVAQALHSQVDMHRAY
                     GGVVPELASRDHIRRVLPLTRQVLAQAECPLGAIDIVAYTRGPGLAGALLVGAGVACS
                     LAAALERPVVGVHHLEGHLLSPFLSADPPRFPFVALLVSGGHTQLMRVADVGEYELLG
                     ETIDDAAGEAFDKSAKLLGLGYPGGPALARLADFGDADAFALPRPLLHSANLDFSFAG
                     LKTAVRTHVLKLGSNVCEQDKANLAASTQAAIVDVLVRKSITALRQTGLDRLVVAGGV
                     GANARLRGQLQRECEKRQAVVHYPELALCTDNGAMIALAAAMRLQRGKLQPQSDYGFN
                     VLPRWALAAA"
     gene            complement(1735..3882)
                     /locus_tag="VF308_01515"
     CDS             complement(1735..3882)
                     /locus_tag="VF308_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase domain-containing ABC transporter"
                     /protein_id="HEX7435358.1"
                     /translation="MTSASLLDALRLGLGGRRLPILLQTEGAECGLACLAMVASHHGL
                     QSDLPSLRRRFSLSLKGATMVDLIRMAGQLQLSPRALRAEMEHLPQLELPCILHWDLN
                     HFVVLKEIRRGKAVLHDPARGVRRLSMAEVSKHFTGIALELTPQADFRPQVARQSVTV
                     RQLLGRVSGLKRSLLQIFALAFALEGFMLLAPFYLQWVVDGVLVGADRDLLVTLGLGF
                     GLLVLIQVGAGTIRSWAVLHLSSMLNLQWLGNVFAHLMRLPVSWFEKRHTGDVMSRFG
                     AIQQIQQTLTTSFIEAVLDGLLVIVTLAMMVVYSGTLAAIALASVAIYGLLRWGFFRP
                     LRDATEEAIVFDAKRSSHFLESLRGVQSIKLFNAEEDRQARFMNLVVDAMNAHIATRK
                     LDLLFGVLHKLVFGLERVAVVWVGALLVLDQRFSVGMLFAFLAYKEQFAVRVSALIDK
                     LVEVKMLKLQGERLADIVLAEPEARVEAPPRDSGEPVGIELSNVSFGYSDAEPDVLRK
                     LSLRIEPGESVAIVGPSGCGKTTLLKLMLGIHAPQAGEIRIGSTNLRKLGLRAWRDMI
                     GTVMQDDHLFAGSIADNISFFDSQPDLAFVERCARIAAVDDEIEAMPMGYHTLIGDMN
                     ASISGGQRQRILLARALYKRPRILFLDEATSALDVDREREVNQAIRQLQLTRIIVAHR
                     PETIASASRVVVLHDGRVGQDLRSVPGGSNLAR"
BASE COUNT          697 a         1364 c         1361 g          563 t
ORIGIN      
        1 ccacctcgtc gccggccccg accagcgcct gcgtcgccag catcagggcg ctgacgccgg
       61 acgaggtgac ggcgatgcgc cgcgacgtga ccgggcgatg cagcgcgttc acgtagccgg
      121 cgagcgcgtc gcgcaactcg ggcaagccga gattgtgggc ataaaaagtc tcgccgtcct
      181 ggagcgagcg cacagccgcc acgcggatga actcgggcgt cggctcgtcg ctttcgccga
      241 accagaaagc gagcacgtcg gcgcggccga ggccggcatt ggccacttca cggatcttcg
      301 acccgggcag ctcctcgatg atcggtctca tgaacactcc agctggcggc aagcgcgacg
      361 agcccgaaat tcaaggctcg taaaaacgaa aatgccgctc caactgcggc ggcaaggttg
      421 ctgcgctgtg cggcgaccca ccgattgtag gagcccgcca tgttcgtcta tcccctgccc
      481 cgcagcgcct atgtcgctgc ccactgcgcg tcgcggcgcc gcgcgctatg cacgcaccgt
      541 ggccctgccg gcggaagtcg accaggccgc gtcgcaagtg ccgaccggcg ccctgcagat
      601 cagcgtcagc tgattcttca agccgccgcg agggcccaac gcggcagcac gttgaagccg
      661 tagtcggact gcggctgcaa cttgccgcgc tgcagtcgca tcgccgcggc cagcgcgatc
      721 atcgcgccgt tgtcggtgca aagcgccagt tccgggtaat ggacaacggc ctggcgcttt
      781 tcgcattcgc gctggagttg cccgcgcagg cgcgcattcg cgccgacgcc gccggcgacc
      841 accagccgat cgagcccggt ctgccgcagc gccgtgatcg acttgcgcac gagcacgtcg
      901 acgatcgccg cctgcgtcga ggccgccagg ttcgccttgt cttgttcgca gacattgctg
      961 cccagcttga ggacgtgggt tcgcaccgcg gtcttcaggc cggcgaacga gaagtcgaga
     1021 ttggcgctgt gcaggagcgg ccgcggcagc gcaaacgcgt ccgcgtcgcc gaaatcggcc
     1081 aggcgggcga gcgccgggcc gcccggatag ccgaggccga gcagcttggc ggacttgtcg
     1141 aaagcctcgc cggccgcgtc gtcgatggtc tcgccgagca attcgtattc gcccacgtcg
     1201 gccacgcgca tcagctgcgt gtgcccgccg gacacgagca gggcgacgaa tggaaagcgc
     1261 ggcggatcgg ccgacaggaa tggcgagagc aggtggcctt cgaggtggtg cacgccgacc
     1321 accgggcgct cgagcgcagc ggcgagggag caggcgactc cggcaccgac caacaacgcg
     1381 ccggcgagcc cggggccgcg cgtatacgcc acgatatcga tcgcgccgag tgggcactcc
     1441 gcctgcgcga ggacctggcg cgtcagcggc agcacccggc ggatgtgatc gcgcgaggcc
     1501 agttcgggca cgacgccgcc atacgcgcgg tgcatgtcga cctggctgtg cagggcctgc
     1561 gccacgaggc ggggcggcgc ggatgatccg tcagtccgga ccagggccac gccggtttca
     1621 tcgcacgatg attcgatgcc gagcacattc atcgcgccag tctagggcca gattccgccg
     1681 ggagcgggca cgcgaccaaa ccgaaatgca cagcaccggc gacccgagtt gtactcagcg
     1741 cgcgaggttg ctcccgcccg gcacgctgcg cagatcctgc ccgaccctgc cgtcgtggag
     1801 cacgaccacg cggctcgccg atgcgatcgt ctccggacgg tgcgcgacga tgatgcgggt
     1861 cagctggagc tgccggatcg cctggttcac ttcacgctcg cggtcgacat cgagcgcact
     1921 cgtcgcctcg tcgaggaaga ggatgcgcgg ccgcttatag agcgcgcgtg ccagcaggat
     1981 gcgctggcgt tggccgccgg aaatgctcgc gttcatgtcg ccgatgaggg tgtggtagcc
     2041 catcggcatc gcctcgatct cgtcgtcgac cgcggcaatc cgcgcgcacc tttcgacgaa
     2101 ggcgagatcc ggctggctgt cgaagaagct gatgttgtcg gcgatggagc cggcgaacag
     2161 gtggtcgtcc tgcatcaccg tgccgatcat gtcgcgccac gcacgcaaac cgagcttgcg
     2221 aaggttcgtg ctgccgatcc ggatctcacc ggcctgcggc gcatggatgc cgagcatcag
     2281 cttgagcagc gtggtcttgc cgcagcccga ggggccgacg atcgcgaccg attcgcccgg
     2341 ctcgatccgc agcgagagct tgcgcaagac gtcgggctcg gcgtccgaat agccgaagct
     2401 gacgttgctg agctcgatgc cgaccggctc gcccgaatcg cgcggcggcg cttcgaccct
     2461 cgcctcgggc tcggccagca cgatatcggc gaggcgctcg ccctgaagct tgagcatctt
     2521 gacttcgacc agcttgtcga tgagcgcgct cacgcgcacg gcgaactgct ccttgtaagc
     2581 cagaaacgcg aacagcatgc cgaccgagaa acgctggtcg agcacgagca gcgccccgac
     2641 ccagaccacc gcgacccgct cgagtccgaa gacgagcttg tgcagaacgc cgaagaggag
     2701 atcgagcttc ctcgtcgcga tgtgcgcatt catcgcgtcg accacgaggt tcatgaagcg
     2761 cgcctgccgg tcctcctcgg cgttgaaaag cttgatcgac tggactccgc gcaacgattc
     2821 gaggaagtgg ctcgagcgct tggcgtcgaa cacgatcgct tcctcggtcg catcgcgcag
     2881 cggccgaaag aagccccagc gcagcagccc gtagatcgcg acgctcgcca gcgcgatcgc
     2941 cgccagggtg ccgctgtaga cgaccatcat cgccagcgtg acgatgacca ggagcccgtc
     3001 gagcaccgcc tcgatgaagc tcgtggtgag ggtctgctgg atctgctgga tcgcgccgaa
     3061 gcgcgacatc acgtcgccgg tgtggcgctt ctcgaaccag gaaaccggca gccgcatcag
     3121 atgcgcgaag acgttgccga gccattgcag gttgagcatg ctcgacaggt gcagcaccgc
     3181 ccaggaacgg atcgtgcccg ccccgacctg gatcagcacg agcaggccga agcccagccc
     3241 gagcgtgacc agcaggtcgc gatcggcacc gacgagcacg ccgtcgacga cccactgcag
     3301 gtagaacggc gcgagcagca tgaacccttc gagcgcgaac gcgagggcga agatctgcag
     3361 caaggagcgc ttgagcccgc tgacgcggcc gagaagctgg cgcacggtga cgctctggcg
     3421 cgccacctgc ggccggaagt cggcctgcgg cgtgagctcg agcgcgatcc cggtgaaatg
     3481 cttcgaaacc tccgccatgg acaggcgccg cacgccccgc gccgggtcgt gcaggacggc
     3541 tttgccgcgg cggatttcct tcagcacgac gaagtggttc aggtcccagt gcaggatgca
     3601 ggggagttcg agctggggca gatgttccat ctcggcccgc agcgcgcgcg gactgagctg
     3661 cagctgcccg gccatgcgga tcaggtcgac catcgtcgcg cccttgagcg acagcgaaaa
     3721 gcgccgccgc aaggacggca ggtcgctttg caggccatgg tgcgaagcga ccatcgcgag
     3781 gcacgcgagc ccgcactcgg cgccctcggt ctgcaggagg atcggtaggc gcctgccgcc
     3841 gagcccgaga cggagcgcgt cgagcaggga cgcggaggtc acgcccgcag cccccgagcc
     3901 ggaggcgagc cgaaagccgc gcccgcgccg agcggggccc gatgagaccg aacgccgctc
     3961 acacccggcc cgcgatgccg agcac
//
LOCUS       DASVHM010000082         4825 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_293632, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000082 DASVHM010000000
VERSION     DASVHM010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4825
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293632"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..919)
                     /locus_tag="VF308_01520"
     CDS             complement(<1..919)
                     /locus_tag="VF308_01520"
                     /inference="COORDINATES: protein motif:HMM:NF024575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEX7435359.1"
                     /translation="MVGSDGTLPLPWLAEPLRRGLAQRAHALLAHGPEGVGQFELGLT
                     LAQAWLCEARDDASNARRPCGVCGSCRLVQAHSHPDLLVLLPDALRESLGWEPAAGDA
                     EEGGSEKPGKAKPSKEIKVEAIRLAVDFAQTTSARGRGKVVLLYPAERMNRIAANTLL
                     KTLEEPPGDARFLLSCAAPDVLLPTIRSRCQALPLRPPPRDEAIEWLAARGVAEPAVL
                     LAACGGQPLQALQWSQEGVDARLWQQTPALLMRGETTPFMNWPLPRLLEALQKLCHDA
                     LCVAAGGVPRYFPPGSIRPSGGVARLSAWG"
     gene            complement(913..1524)
                     /gene="tmk"
                     /locus_tag="VF308_01525"
     CDS             complement(913..1524)
                     /gene="tmk"
                     /locus_tag="VF308_01525"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011804987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEX7435360.1"
                     /translation="MDGRFITFEGIDGAGKSSHIETVAAHLGRLGAEVVCTREPGGTA
                     LAEELRKLILHAPMDAMTEALLIFAARRDHLQVVIEPALARGATVLCDRFTDATFAYQ
                     GAGRGFAGDVLAQLERWVQQGLQPDLTFWFDLDPALALRRVADARQADRFEAQDLVFF
                     ERVRAGYRARLEDDPKRFARLDAARDRAAVSAQIIATLEARGW"
     gene            complement(1533..2522)
                     /gene="mltG"
                     /locus_tag="VF308_01530"
     CDS             complement(1533..2522)
                     /gene="mltG"
                     /locus_tag="VF308_01530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEX7435361.1"
                     /translation="MKFWRVLILFLLLLASAVVATAAWWLNRPLALAADSVEVSIEFG
                     TAPRDIAQQWVQAGVQGSPTLLYEWFRWSGEARRIRAGSYEIDRGTTPIALLSKMVRG
                     DETLAVVRFNEGWTFRQMRAELARAEALKPLTAAMGDAEIMQALDALGVAPEGRFYPD
                     TYAYSKGSTDLAVLKRAYRAMQRRLEAAWAQRAVDTPLQSADEALTLASIVEKETGLP
                     SDRGRVAAVFVNRLRLGMPLQTDPSVIYGLGPSFDGNLRKRDLLADTPHNTYTRAGLP
                     PTPIAMPGKLALLAAVRPDSSRALYFVSRGDGSSEFSETLPEHNRAVNRFQRK"
     gene            2604..3515
                     /locus_tag="VF308_01535"
     CDS             2604..3515
                     /locus_tag="VF308_01535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011483436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein"
                     /protein_id="HEX7435362.1"
                     /translation="MNMQEPVSGAVLLAHLGVIRARGPEATKFLQSQLTNDFAAMGPS
                     EVRFAGFCSAKGRLQASFVAWQAAPDDVLLACSASVLPATLKRLSMFVLRAQCKLSDA
                     SAEVSLRGLVGIAAERSMPAARDWEKRDVVGAALLRLPDAAGVARCIVASTSVPEEGT
                     EPAIPLDHWRWLEVQSGIPTIEAATIDRFVPQMINFELLGGVDFRKGCYPGQEVVARS
                     EYRGTIKRRMFLFDCAAPAVAGQEIFHSADPGQPAGLVVNGAPGPTGAWSALVEVKLA
                     ALEGGTLHLGSAEGAPLRIGELPYPLS"
     gene            3520..3825
                     /locus_tag="VF308_01540"
     CDS             3520..3825
                     /locus_tag="VF308_01540"
                     /inference="COORDINATES: protein motif:HMM:NF027614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4936 family protein"
                     /protein_id="HEX7435363.1"
                     /translation="MRELFVYYRVPAAQAAAAEAEVRALQADLRAAMTGLRTRLLRRP
                     EESGVQQTWMEIYAFDAAQEPAGVSPELQAEIEAEASRRLTRIEGPRHVEVFIPLAS"
     gene            complement(3862..4719)
                     /locus_tag="VF308_01545"
     CDS             complement(3862..4719)
                     /locus_tag="VF308_01545"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbgC/FadM family acyl-CoA thioesterase"
                     /protein_id="HEX7435364.1"
                     /translation="MKRTEFRFLDRLRVRWAEIDAQKIVFNAHYLMYFDTAVAGYWRA
                     LALPYAQTMEYLGGDLYVRKATVEFEGSARYDDVLDIGMRCARIGNSSILFSGAAFRQ
                     DEALVSCELVYVFADPQTQTAKPVPQQLRDVLQAFEAGKPMVEVRTGTWEALGREAGG
                     IRTEVFVDEQKIPADMEWDDADAGAVHAVAFNRLGVALGTGRLLEHVPGVAKIGRMAV
                     RQTVRGSSVGRAVLDALLLVARQRGDREAILHAQMSAAPFYARAGFSARGPEFEEAGI
                     PHVEMVRSL"
BASE COUNT          738 a         1664 c         1693 g          730 t
ORIGIN      
        1 ggccccatgc actgagccga gcgaccccgc cgctcggccg aatcgagccg ggcggaaaat
       61 agcgcggcac gccgcccgcg gcgacgcaga gggcgtcgtg gcagagcttt tgcaaagcct
      121 cgagcaagcg cggcagcggc cagttcatga acggcgtcgt ctcgccgcgc atcagcagcg
      181 ccggcgtctg ttgccagagc ctcgcgtcga cgccctcctg cgaccattgc agcgcctgca
      241 gcggctggcc accgcaggcc gcgaggagca ccgcgggctc ggccaccccg cgcgccgcga
      301 gccattcgat cgcctcgtcg cgcgggggcg gccgcagcgg cagcgcctgg cagcggctgc
      361 ggatcgtcgg cagcaacacg tcgggcgcgg cgcaactcaa caggaagcgg gcatcgcccg
      421 gaggctcttc gagcgtcttc agcaaggtgt tggcggcgat gcggttcatc cgctcggccg
      481 ggtacagcag caccaccttg ccgcgtccgc gcgccgaggt ggtctgggcg aagtcgacgg
      541 ccaggcggat cgcctcgacc ttgatttcct tgctcggctt ggccttgcca ggcttctcgg
      601 agccaccctc ctcggcgtca ccggccgcag gctcccagcc cagcgactcg cgcagcgcat
      661 cgggcaggag cacgagcagg tcggggtgcg agtgcgcctg caccaggcgg cagctgccgc
      721 acacgccgca gggccggcgc gcgttcgatg catcgtcgcg cgcttcgcag agccaggcct
      781 gggcgagcgt gaggccgagc tcgaactgcc cgaccccctc cggtccgtgc gcgagaagcg
      841 catgcgcgcg ttgcgccagt ccccggcgca ggggctcggc gagccagggc agcggcagcg
      901 tgccgtcgct gcctaccatc cgcgagcctc gagagtggca atgatctgtg ccgagaccgc
      961 agcgcgatcc cgggccgcgt cgagccgcgc gaaacgcttc ggatcgtcct ccagccgggc
     1021 ccgatagccc gcccgcacgc gttcgaagaa gacgaggtcc tgggcttcga aacggtcggc
     1081 ctggcgcgcg tcggcgacgc gccgcaacgc gagggccggg tcgaggtcga accagaacgt
     1141 gaggtcgggc tgcaagccct gctgcaccca gcgctcgagc tgcgccagca cgtcgccggc
     1201 gaagccgcgc ccggcgccct ggtacgcgaa ggtcgcgtcg gtgaagcgat cgcagagcac
     1261 cgtcgcgccg cgcgcgagag ccggctcgat gacgacttgc agatggtcgc ggcgcgcggc
     1321 gaatatcagc agcgcctccg tcatcgcgtc catcggcgca tgcaggatga gcttgcgcag
     1381 ttcctcggcg agcgccgtgc cgccgggctc gcgcgtgcag acgacttcgg cgccgaggcg
     1441 ccccaggtgc gccgcgacag tctcgatgtg gctcgacttg ccggcgccgt cgatgccctc
     1501 gaacgtgatg aacctgccgt ccacgcctgg ccctacttgc gctggaatcg attcaccgcg
     1561 cgattatgct cgggcagcgt ttcgctgaat tcgctgctgc catcgccgcg cgagacgaag
     1621 tacagcgccc tgctcgaatc gggccgcacc gcggccagca gggcgagctt tccgggcatc
     1681 gcgatcgggg tcggcggcag tccggcccgc gtgtaggtgt tgtgcggcgt gtcggccagc
     1741 aggtcgcgct tgcgcaggtt gccgtcgaag gaagggccca ggccgtagat cacgctcggg
     1801 tcggtctgca gcggcatgcc caagcgcagc cggttgacga agactgcggc cactcggccg
     1861 cggtccgacg gaaggccggt ttccttctcg acgatcgagg cgagcgtcag ggcttcgtcg
     1921 gcgctttgca gcggcgtgtc gacggcacgc tgggcccatg cggcctcgag gcggcgttgc
     1981 atggcgcggt aggcacgctt caggacagcg aggtcggtgc tgcccttgct gtacgcgtag
     2041 gtgtccgggt agaaacgccc ttccggcgcc acgccgagcg cgtcgagcgc ctgcatgatc
     2101 tcggcatcgc ccatggcggc ggtcagcggc ttcagcgcct cggccctggc gagttcggcg
     2161 cgcatctgcc ggaacgtcca gccttcgttg aagcgcacaa cggcaagcgt ttcgtcgccg
     2221 cggaccatct tgctgagcag cgcgatcggt gtcgtgccgc ggtcgatctc gtagctgccg
     2281 gcgcggatcc tgcgcgcctc gccggaccag cgaaaccatt catagagcag ggtcggcgac
     2341 ccctgcacac ccgcctgcac ccattgctgc gcgatgtcgc gcggcgcggt tccgaattcg
     2401 atcgagactt cgacgctgtc ggcggcgagc gccaatggcc ggttcagcca ccaggcggcg
     2461 gtcgcgacga cagcactggc cagcagaagg agaaagagga tgaggacgcg ccagaacttc
     2521 attgtggcaa cgtcgcgccg cgcccgcgca ggctctgaga ccccgcaggc gaaagaatca
     2581 tgggtgctga tgataatcgg ggcatgaaca tgcaagagcc cgtctcgggc gcggtgctcc
     2641 tcgcccacct cggtgtcatc cgcgcacgcg gccccgaggc gacgaaattt ctgcagagcc
     2701 agctgacgaa cgacttcgcg gcgatgggac cttccgaggt acgcttcgct ggcttttgct
     2761 ccgccaaagg tcggctgcag gcaagcttcg tcgcctggca ggccgcgccc gacgatgtgc
     2821 tgctggcctg ctcggccagc gttctgccgg ccacgctgaa gcgcctgtcg atgttcgtct
     2881 tgcgcgccca gtgcaagctc agcgatgcga gcgccgaggt gtcgcttcgg ggccttgtgg
     2941 gcatcgccgc ggagcgctcg atgcccgcgg cgcgcgactg ggagaagcgc gatgtcgtcg
     3001 gcgctgcgct gctgcgcctg cccgacgcgg ccggggtcgc gcgctgcatc gtcgcctcga
     3061 catcagtccc ggaggaaggc acggagccgg cgatcccgct cgatcactgg cgctggctcg
     3121 aggtgcagag cggcatcccg acgatcgaag ccgcaaccat cgaccggttc gttccgcaga
     3181 tgatcaactt cgaattgctc ggcggggtcg atttcaggaa gggctgttac ccgggccagg
     3241 aggtcgtcgc gcgcagcgaa tatcgaggca cgatcaagcg ccgcatgttc ctgttcgatt
     3301 gcgcggcgcc ggccgtggcg gggcaggaga tcttccacag cgccgacccg ggccagccgg
     3361 cgggcctggt ggtcaacggg gcgccggggc cgaccggagc ctggagtgcg ctcgtcgaag
     3421 tgaagctggc cgccctcgaa ggcggtacgc tgcatctcgg ttcggccgaa ggcgccccac
     3481 tgcgcatcgg cgagttgccc taccccttga gctgagcgga tgcgcgaact cttcgtctac
     3541 taccgcgtgc cggcagcgca ggccgccgct gccgaggccg aagttcgcgc cctgcaggcc
     3601 gatcttcgcg ccgcgatgac gggtctgagg acgcgattgc tgcggcggcc ggaagaatcc
     3661 ggcgttcaac agacgtggat ggaaatctac gcgttcgatg cggcgcagga gcccgccggc
     3721 gtgagcccgg aactgcaagc cgagatcgag gccgaggcat cacgccgtct gacacggatc
     3781 gaagggccga gacacgtcga ggtgttcatc ccgctggcct catagcggac gcactcgccg
     3841 cacccgccgg ccccggcgtt ctcagaggct gcgcaccatc tcgacgtgcg gaatgccggc
     3901 ttcctcgaac tccggcccgc gcgcgctgaa tccggcgcgg gcatagaacg gcgcggcact
     3961 catctgcgcg tgcaggatcg cttcgcggtc gccgcgttgc cgggctacca gcaggagggc
     4021 gtccagcacc gcgcggccca cgctgctgcc gcgcacggtc tggcgcaccg ccatgcgccc
     4081 gatcttcgcg acgccgggca cgtgttcgag caaccgcccg gttccgagcg ccaccccgag
     4141 gcggttgaag gcgaccgcgt gcaccgcgcc ggcgtcggcg tcatcccatt ccatgtcggc
     4201 cgggatcttc tgctcgtcga cgaagacttc ggtgcgaatt ccgccggcct cgcggccgag
     4261 cgcctcccag gtgccggtgc ggacctcgac catcggcttg ccggcttcga atgcctgcag
     4321 cacgtcgcgc agctgctgcg gcaccggctt ggcggtctgc gtctgcgggt cggcaaacac
     4381 gtacacgagt tcgcacgaga ccagcgcttc atcctggcgg aaggcggctc cgctgaagag
     4441 gatcgacgag ttgccgatgc gtgcgcagcg catgccgatg tcgagcacgt cgtcgtagcg
     4501 cgccgagccc tcgaattcga ccgtcgcctt gcgcacgtag aggtcgccgc cgaggtactc
     4561 catagtctgc gcatagggca gcgccagggc gcgccagtag ccggcgacgg ccgtgtcgaa
     4621 atacatcagg taatgcgcgt tgaagacgat cttctgcgca tcgatctcgg cccagcgcac
     4681 gcgcaggcgg tcgaggaatc ggaactcggt tcgtttcatg gtggtgcgcg aagtcgcgcg
     4741 gcgagtgtgc cagactgccg gatccgaaag gcaccgtcgc aacggaacga gcatggccct
     4801 gatcaactac atcacccaga tccag
//
LOCUS       DASVHM010000083         3035 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_943565, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000083 DASVHM010000000
VERSION     DASVHM010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_943565"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VF308_01550"
     CDS             <1..180
                     /locus_tag="VF308_01550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435365.1"
                     /translation="DDFVKWFFNASPVWVDERSILKDSPNLQVPADRRAALHDRRPSA
                     EMHSATTQSTDRRSQ"
     gene            183..557
                     /locus_tag="VF308_01555"
     CDS             183..557
                     /locus_tag="VF308_01555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435366.1"
                     /translation="MRTNAMTWSAGAGSSAAPSLRRAWERAPLRTRCLGIAGVILAFG
                     LLCGFYAVVLGGVHRAQAGREQARFALEHQAVCSAFATAASRDLCAVMVAAREAPGAV
                     VHASYEQPGWAVRKPELSARLY"
     gene            626..1228
                     /locus_tag="VF308_01560"
     CDS             626..1228
                     /locus_tag="VF308_01560"
                     /inference="COORDINATES: protein motif:HMM:NF016301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HEX7435367.1"
                     /translation="MTRTQDSLVVCERCGKAHRWRLLGPGAVARCTRCEAVLGRGHRL
                     GVETVLALTVTALIVFLIASFADVIAIRLGGNIVATTLPGAVWSAWRDGEQLVAVTAA
                     VTALVAPALFILLRLYVLVPLAAGRVPPGFGFCVRALHQVSRWNMVEVLTVGGLLSLV
                     RLAALAEATPGPAMFALGLLTLLFAAIESAGLRHLWWYVR"
     gene            1225..1857
                     /locus_tag="VF308_01565"
     CDS             1225..1857
                     /locus_tag="VF308_01565"
                     /inference="COORDINATES: protein motif:HMM:NF016301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HEX7435368.1"
                     /translation="MSADLDAPLLGCESCGLVSREVALVQLPPGAVLHCPRCHHVLRH
                     EKPLSVQRTWACVLAAAVLYVPANAMPIMSTTSAFETSSHTLLGGIHELWDDGSWVLA
                     LIVFIASIAVPVLKIAALALLAWSVKKAPRWRRLERARLFRLIELVGHWSMLDVYVVV
                     LLGAAVRFGSLANARPEPGLLAFAAVVVLTLLAAHSFDARLIWRDPDRHG"
     gene            1850..>3035
                     /locus_tag="VF308_01570"
     CDS             1850..>3035
                     /locus_tag="VF308_01570"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEX7435369.1"
                     /translation="MADTPQDPGAEAAGTEPALPAPLLDLPQPEVTRPRRFGISLVWL
                     VPIVALVVAASLFVRTVILVGPRIDIEFTTADGIEPGKTDVRYKEVVVGRVEAVSLRG
                     DRKRVIVTVRLDRASAGLAVDDTLFWVVRPRIGAGGISGLGTLLSGAYIGADAGVSTK
                     PRDSFNGLEAPPFVLRGEPGAVFALRADDLGSLEVGSPVFYRRTRVGRVVGYTLDPVQ
                     DELSIRIFIEAPYEKLVTRQSRFWNASGVDLRLTASGLTLNTQTLASVLAGGLAFENP
                     SGAAKQAPAPAGSSFVLFNDRKAALAPVDGEPLPVRMVFEQSVRGLAENAPVDFLGIE
                     IGRVRTIALQYDSQRQRFPVRVVADIYPLRLGSIRSALCAGSEGDPQAEVMVLKRLVE
                     KGL"
BASE COUNT          368 a         1067 c         1079 g          521 t
ORIGIN      
        1 gacgatttcg tgaagtggtt cttcaacgcg tcaccggtgt gggtggacga gcgcagcatc
       61 ctgaaggatt ccccgaacct gcaggtcccg gcggaccggc gcgcggcgct ccacgatcgc
      121 cggcccagcg cagagatgca cagcgcaacg acccaatcga cggatcgacg gagccaataa
      181 tcatgagaac gaatgctatg acctggagcg ctggcgctgg ttcttccgct gcgccgtcgc
      241 tgcgccgagc gtgggagcgc gcgccgctgc gcacgcgctg cctcggcatc gccggggtca
      301 tcctcgcgtt cggacttctg tgcgggttct atgcggtcgt gctcggcggc gtccatcgtg
      361 cccaggccgg gcgcgagcag gcgcgcttcg ccctcgagca tcaggcggta tgcagcgcgt
      421 tcgcgacggc ggcgtcgcgc gatctctgcg cggtgatggt cgcggcgcgc gaggcgccgg
      481 gcgccgtggt gcatgcctcg tacgagcagc ccggctgggc ggtgcgcaag ccggagctca
      541 gcgcgcggct ctactgagcc tttggtaggc tagcatcggg tcgcgcgcgg cgggggctgc
      601 gcgccatgga acagggaggc tcgatgtgac ccggacgcag gactcgctgg tcgtctgcga
      661 gcgctgcggc aaggcgcacc gatggcgcct gctcggcccc ggcgcggtgg cccgctgcac
      721 gcgctgcgaa gccgtcctcg gccgtggcca ccgcctcggc gtcgagaccg ttctcgccct
      781 caccgtcacg gcgctgatcg tcttcctgat cgccagcttc gccgacgtca tcgcgatccg
      841 cctcggcggc aacatcgtcg cgacgacgct gcccggcgcg gtctggtcgg cctggcgcga
      901 cggcgaacaa ctcgtcgctg tcaccgcggc cgtgacggcg ctggtcgcgc cggcgctctt
      961 catcctcctg cgtctctatg tgctcgtgcc gctcgccgcc ggcagggtcc cgcccggctt
     1021 cggcttctgt gtgcgcgcgc tgcaccaggt ctcgcgctgg aacatggtcg aggtgctgac
     1081 cgtcggcggc ctgctctccc tggtgcgcct ggcggcgctc gccgaggcca cgcccggtcc
     1141 ggcgatgttc gcgctcggac tcctgaccct gctgttcgcg gccatcgaat cggctgggct
     1201 gcgccacctc tggtggtacg tgcgatgagc gcggatctcg acgcaccgct gctcggctgc
     1261 gagagttgcg gtctggtttc gcgcgaggtc gcactggtgc agctgccgcc cggtgcggtt
     1321 ctgcactgtc cgcgctgcca ccatgtgctg cgccacgaga agcccctgag cgtgcagcgc
     1381 acctgggcct gcgtcctcgc cgccgcggtg ctgtacgtgc ccgccaacgc aatgccgatt
     1441 atgagcacga cgtcggcgtt cgagaccagc agccacaccc tgctgggcgg catccacgaa
     1501 ctctgggacg acggctcgtg ggttctggcg ctgatcgtct tcatcgccag catcgcggtc
     1561 ccggtgctga agatcgccgc gctggccctg ctggcctgga gcgtgaagaa ggctccgcgc
     1621 tggcgccggc tggagcgggc gcggctgttc cggctgatcg agctggtcgg gcactggtcg
     1681 atgctcgacg tctatgtcgt cgtcctgctg ggcgccgcgg tccgcttcgg ttcgctcgcc
     1741 aacgcccgcc ccgaaccggg gctgctggcg ttcgccgcgg tcgtcgtgct gacgctgctc
     1801 gccgctcaca gtttcgatgc gcgcctgatc tggcgcgatc ctgaccgtca tggctgacac
     1861 gccgcaggat ccgggcgccg aggcggcggg caccgagccg gcgctgcccg cgcccttgct
     1921 ggatctgccg cagccggagg tgacccggcc gcgccggttc ggcatttcgc tcgtctggct
     1981 ggttccgatc gtcgccctcg tcgtggccgc gtcgctcttc gtgcgcacgg tgatcctggt
     2041 cgggccgcgc atcgacatcg aattcacgac cgccgacggc atcgagcccg gcaagaccga
     2101 cgtgcgctac aaggaggtgg tggtcgggcg ggtcgaggcc gtttcgctgc gcggcgaccg
     2161 caagcgcgtg atcgtgacgg tgcggctcga tcgggcttcg gccgggctcg cggtcgacga
     2221 cacgcttttc tgggtggtgc ggccgcgcat cggcgccgga ggcatcagcg gcctcggcac
     2281 cttgctgtcc ggcgcctaca tcggcgccga tgccggcgtc tcgaccaagc cgcgcgacag
     2341 tttcaatggc ctcgaggcac cgccgttcgt gctgcgcggc gaacccggcg cggtcttcgc
     2401 gttgcgcgcg gacgatctcg gctccctcga ggtcggctcg ccggtgttct accgccgcac
     2461 ccgggtcggg cgcgtcgtcg gctacacgct cgacccggtg caggacgaac tgtcgatccg
     2521 catcttcatc gaagcgccct acgagaagct ggtgacgcgg caatcgcggt tctggaatgc
     2581 gagcggcgtc gacctgcgcc tcaccgcgag cggcctgacc ctgaacacgc agaccctcgc
     2641 ctcggtgctc gccggggggc tcgcgttcga gaacccatcg ggcgcggcga agcaggcgcc
     2701 ggcgccggcc ggaagcagct tcgtcctctt caacgatcgc aaggcggcgc tcgccccggt
     2761 ggatggggag ccgttgccgg tgcggatggt cttcgagcag tcggtgcgag gcctggccga
     2821 gaatgcgccg gtcgatttcc tcggcatcga gatcggccgg gttcgcacca tcgcgctgca
     2881 atacgacagc cagcgccaac gcttcccggt ccgcgtcgtc gccgacatct acccgctgcg
     2941 gctcggctcc atccgcagcg ctctctgcgc cgggtccgaa ggcgatccgc aggcggaggt
     3001 gatggtgctg aaacgcctcg tcgagaaggg gctgc
//
LOCUS       DASVHM010000084         4365 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_582735, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000084 DASVHM010000000
VERSION     DASVHM010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4365
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582735"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VF308_01575"
     CDS             <1..212
                     /locus_tag="VF308_01575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019430868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="(2Fe-2S) ferredoxin domain-containing protein"
                     /protein_id="HEX7435370.1"
                     /translation="KEGLSGPGQLRVNKAGCMDRCSGGPVAVVYPEGVWYTYVDTSDI
                     DEIVDSHLKRGEVVTRLLLPADVGR"
     gene            228..863
                     /locus_tag="VF308_01580"
     CDS             228..863
                     /locus_tag="VF308_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007829594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX7435371.1"
                     /translation="MTPRTVREQIAGPAGRIECAIDRPARAPRGLAIACHPHPQFGGT
                     LDNKVVQTIARACLELGWASVRFNFRGVGHSEGVWDEGRGEIDDALAVVAAWRGREEF
                     AELPFLLAGFSFGGYVAAEVARQLGADPPRRIVLVGPSTEKQQVAVVPADTLVIHGES
                     DDVVPLAATLAWARPQNLPVIVFPGVGHFFHGQIALLKKVIVRELHDLVAV"
     gene            904..2091
                     /locus_tag="VF308_01585"
     CDS             904..2091
                     /locus_tag="VF308_01585"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007851142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HEX7435372.1"
                     /translation="MRLSRSSPRPFVAAFVLAFATVAAAQAPQPPEVAAKSFVVLDLT
                     TRQTLAEREADASADPASLTKLMTAYIVFQALRDKKLTLEQTLPVSKLAWSERKGGGS
                     LMFIDTTMTPKVDELLKGLIVQSGNDAAVALAEAVGGSVDVFVGMMNRQAQAWGLKNT
                     SFKNVTGLTEPGHRSTARDMGVIAAHIISDFPEYFPYYSIKEYKYNNIAQPNRNLLLR
                     RDPTVDGMKTGFTESAGYCLLATAQREFPNLGATGGAGKRRIMTVVLNTVSMEARANE
                     SQKLLNWGFQAFDTVRLFDNGKAIVTPQVWKGTANVAKLGASGALFVSVPRGEGARLQ
                     TKVERSDPLVAPLAKGQRVGRILVSTAAGTPLADVPLVVMEPVEQSGIFGRAWDAIRL
                     WVK"
     gene            2135..3025
                     /locus_tag="VF308_01590"
     CDS             2135..3025
                     /locus_tag="VF308_01590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid aminotransferase"
                     /protein_id="HEX7435373.1"
                     /translation="MHTQLPDSLCYLNGEYVPLPEAKVSVLDRGFVFGDGIYEVVPVY
                     GRKLFRFDEHMARLGRSLAKLRIANPHTRDQWLERCRKLIAAFAERGGATDQLVYIQV
                     TRGVAPRDHVMPAGIEPTVFMMVSAMKPASGEQRHHGVACISARDFRWERGDIKSISL
                     LGNVLARQMSADRDALETIMFRAGYLTEAAASNVWIVHEGALLGPPKSEHVLEGIRYD
                     LIKELCEECGIAYNLRPIPEADVASADEILLSSATKEILPVTTLDGEGVGHGALRGKP
                     GPVYARLYEAYQRAKLTQAI"
     gene            3083..3373
                     /locus_tag="VF308_01595"
     CDS             3083..3373
                     /locus_tag="VF308_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007830185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 family protein"
                     /protein_id="HEX7435374.1"
                     /translation="MDTTLMQDIPAEQSLIEYPSRFPIKVMGANVDGFVHAVTEIARR
                     FDPAFDAAAIELRPSSGSKYLGVTITVNATSREQLDELYRTLSTHPMVKVVL"
     gene            3450..4064
                     /gene="lipB"
                     /locus_tag="VF308_01600"
     CDS             3450..4064
                     /gene="lipB"
                     /locus_tag="VF308_01600"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016979 - lipoate-protein ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HEX7435375.1"
                     /translation="MRAFTAARTDQTPDEVWLCEHPPVFTQGVAGRAAHVHDVGAVPV
                     VSTDRGGQVTYHGPGQVVAYPLVDLRRLGIYVKEYVFRLEQALLKTLEAYGVSGHRVR
                     GEPGVYVRPDAPFDHAVWQPAAGADPFEGLAKIAAIGVKVSRHRTYHGVALNVAMDLR
                     PFERIDPCGHAGLRTIDLSTIGVCATWDEVASTLGAKLAAYLSP"
     gene            4064..>4365
                     /locus_tag="VF308_01605"
     CDS             4064..>4365
                     /locus_tag="VF308_01605"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008248225.1"
                     /note="catalyzes the radical-mediated insertion of two
                     sulfur atoms into an acyl carrier protein (ACP) bound to
                     an octanoyl group to produce a lipoyl group; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HEX7435376.1"
                     /translation="MTISAGYDATIKQKAEAKTSRIPIRIVPVGEALKKPDWIRVKAG
                     SPSTRFYEIKQILREHKLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDV"
BASE COUNT          706 a         1573 c         1451 g          635 t
ORIGIN      
        1 agaaggaggg cctctcgggc ccgggccagc tgcgcgtcaa caaggcaggg tgcatggatc
       61 gctgctccgg cgggccggtc gcggtcgtct atcccgaggg cgtctggtac acctacgtcg
      121 acacgagcga catcgacgag atcgtcgatt cgcacctgaa gcgcggcgag gtcgtcaccc
      181 ggctgctgct gcccgccgac gtcggccgct agcgccgccc gcccgccatg acaccgcgaa
      241 cggtgcgcga gcagatcgcc gggccggccg ggcggatcga atgcgcgatc gaccggcccg
      301 cgcgcgcgcc gcgtggcctc gcgatcgcct gccatccgca cccgcagttc ggcggcacgc
      361 tcgacaacaa ggtcgtgcag acgatcgccc gcgcctgcct cgagctcggc tgggcgagcg
      421 ttcgcttcaa cttccgcggc gtcggccact cggagggcgt ctgggacgag gggcgcggcg
      481 agatcgacga cgcgctcgcc gtcgtcgccg cctggcgcgg ccgcgaggaa ttcgccgagc
      541 tgccgttcct gctcgccggc ttctcgttcg gaggctacgt cgcggcagag gtggcgcggc
      601 agctcggcgc cgacccgccg cgccggatcg tcctcgtcgg cccgtcgacc gagaagcagc
      661 aagtggccgt cgtccctgcc gacacgctcg tcatccacgg cgagagcgac gacgtcgtcc
      721 cgctcgcggc gacgctcgcc tgggcccggc cgcagaatct gccggtcatc gtctttccgg
      781 gcgtgggcca cttcttccac ggccagatcg ccttgctgaa gaaagtcatc gtgcgtgaac
      841 tgcacgatct cgtcgcggtc tgaccgtccc ttccatctct cttcctcacc gattcccgtt
      901 cccatgcgcc tttcccgttc ctcgccgcgc cctttcgtcg ccgccttcgt gctcgccttc
      961 gccaccgtcg ccgccgccca ggcgccgcag ccgcccgagg tcgccgccaa gagcttcgtc
     1021 gtcctcgacc tgacgacccg gcagacgctc gccgagcgcg aggccgacgc ctcggccgac
     1081 ccggcgtcgc tgaccaagct gatgaccgcc tacatcgtct tccaggcgct gcgcgacaag
     1141 aagctgacgc tcgagcagac gctgccggtc tccaagctcg cctggtcgga gcgaaagggc
     1201 ggcggctcgc tgatgttcat cgacacgacg atgacgccga aggtcgacga gctgctcaag
     1261 ggcctgatcg tgcagagcgg caacgacgcg gcggtcgcgc tcgccgaggc cgtcggcggc
     1321 agcgtcgacg tgttcgtcgg catgatgaac cggcaggcgc aggcgtgggg cctcaagaac
     1381 accagcttca agaacgtcac cggcctgacc gagccggggc accgcagcac ggcgcgcgac
     1441 atgggcgtga tcgcggcgca catcatcagc gacttccccg agtacttccc ctactactcg
     1501 atcaaggaat acaagtacaa caacatcgcc cagccgaacc gcaacctgct gctgcgccgc
     1561 gacccgaccg tcgacggcat gaagaccggc ttcaccgaat cggccggcta ctgcctgctg
     1621 gcgacggcgc agcgcgagtt cccgaacctc ggtgccacgg gcggcgctgg caagcgccgg
     1681 atcatgaccg tcgtcctcaa cacggtctcg atggaagcgc gcgccaacga gagccagaag
     1741 ctcctcaact ggggcttcca ggcgttcgac accgtgcgcc tgttcgacaa cggcaaggcg
     1801 atcgtcacgc cgcaggtctg gaagggcacg gccaacgtcg ccaagctcgg cgcgtcgggg
     1861 gcactgttcg tgagcgtgcc gcgcggcgag ggtgccaggc tccagaccaa ggtcgagcgc
     1921 agcgacccgc tcgtcgcacc gcttgccaag ggccagcgcg tcggccggat cctggtgtcg
     1981 acggccgcgg gaacgccgct cgccgacgtg ccgctggtgg tcatggagcc ggtcgagcag
     2041 agcggcatct tcggccgcgc ctgggacgcg atcaggctct gggtcaagtg aaactctccc
     2101 gaggcagaca atgaccggca gcagcggagg cgccatgcac acccaacttc cagattcgct
     2161 ctgctacctg aacggcgaat acgtgccgct gcccgaggcc aaggtctcgg tgctcgaccg
     2221 cggcttcgtc ttcggcgacg gcatctacga ggtcgttccg gtctacggca ggaagctgtt
     2281 ccgcttcgac gagcacatgg cgcggctcgg ccgcagcctc gccaagcttc gcatcgccaa
     2341 cccgcacacg cgcgaccagt ggctcgagcg ctgccgcaag ctcatcgcgg ccttcgccga
     2401 gcgcggcggc gcgaccgacc agctcgttta catccaggtg acccgcggcg tcgctccgcg
     2461 cgatcacgtc atgccggccg gcatcgagcc gaccgtgttc atgatggtga gcgcgatgaa
     2521 gccggcctcg ggcgagcagc gccatcacgg cgtggcgtgc atcagcgcgc gcgacttccg
     2581 ctgggagcgt ggcgacatca agagcatctc gctgctcggc aacgtgctgg cgcggcagat
     2641 gtcggccgac cgcgacgcgc tcgagacgat catgttccgc gccggctacc tgaccgaggc
     2701 ggcggcgtcg aacgtctgga tcgtccacga aggcgcgctg ctcggcccgc cgaagagcga
     2761 gcacgtcctc gaaggcatcc gctacgacct catcaaggag ctgtgcgagg agtgcggaat
     2821 cgcctacaac ctgcgcccga tccccgaggc cgacgtggcc tcggccgacg agatcctgct
     2881 cagctcggcg accaaggaga tcctgccggt gacgacgctc gacggcgaag gcgtcggcca
     2941 cggcgcgctg cgcggcaagc cggggccggt gtacgcgcgg ctctacgagg cgtaccagcg
     3001 cgccaagctg acgcaggcga tctgatcggg aggagcgcgg ccgcgaattt gaatcggcgc
     3061 cggccgcccc caactggtca cgatggacac caccctcatg caagacatcc ccgccgagca
     3121 gtcgctgatc gagtacccgt cgcgcttccc gatcaaagtg atgggcgcca acgtcgacgg
     3181 cttcgttcac gccgtgaccg agatcgcgcg ccgcttcgac ccggcgttcg acgccgccgc
     3241 gatcgagctc aggccaagca gcggctcgaa gtacctcggc gtgacgatca ccgtcaacgc
     3301 caccagccgc gagcagctcg acgagctcta ccggacgctg tcgacgcacc cgatggtcaa
     3361 ggtcgtgctc tgagcgtcgc ttcgaaggcg caggcgcggt gatcgtcaag cggctcggcc
     3421 cggtcgccta cgacctgacg ctcgaggcga tgcgcgcctt cacggcggcg cggaccgacc
     3481 agacgcccga cgaggtctgg ctctgcgagc acccgccggt gttcacgcaa ggcgtcgccg
     3541 gcagggcggc gcacgtgcac gacgtcggcg ccgtgccggt cgtcagcacc gaccgcggcg
     3601 gccaggtcac gtaccacggg ccggggcagg tcgtcgccta cccgctcgtc gacctgcgcc
     3661 ggctcggcat ctacgtcaag gagtacgtgt tccggctcga gcaggcgctc ctgaagacgc
     3721 tcgaggcgta cggcgtcagc ggccatcgcg tgcgcggcga gccgggggtc tacgtccgcc
     3781 ccgacgcccc gttcgaccac gcggtgtggc agcccgcggc cggcgccgat ccgttcgaag
     3841 gcctcgccaa gatcgccgcg atcggcgtca aggtgagccg gcaccgcacg tatcacggtg
     3901 tcgccctcaa cgtggcgatg gacctgcggc ccttcgaacg catcgacccg tgcggtcatg
     3961 ccggcctgag aacgatcgat ctttctacaa tcggcgtttg cgccacctgg gacgaggtgg
     4021 cgagcaccct cggcgccaag ctcgccgcct acctgagccc gtgatgacga tttcggccgg
     4081 ctacgacgcg acgatcaagc agaaggccga ggccaagacc tcacgcatcc cgatccgcat
     4141 cgtgccggtc ggcgaggcgc tgaagaagcc cgactggatc cgcgtcaagg ccggctcgcc
     4201 ctcgacccgt ttctacgaga tcaagcagat cctgcgcgag cacaagctgc acacggtgtg
     4261 cgaggaagcg tcgtgcccga acatcggcga gtgcttcggc aagggcaccg cgaccttcat
     4321 gatcatgggc gacaagtgca cccggcgctg cccgttctgc gacgt
//
LOCUS       DASVHM010000085         2042 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1087339, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000085 DASVHM010000000
VERSION     DASVHM010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1087339"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(9..1145)
                     /locus_tag="VF308_01610"
     CDS             complement(9..1145)
                     /locus_tag="VF308_01610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015012302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435377.1"
                     /translation="MIKRRQLIRSAAGLGLASLGAPLLAQQGGRIVLGQSAALSGPAS
                     ALGEQFKIGAQLLFERINQRGGIIGRQIELQSLDDGYEPDRCAENTRKLIDSGVFALF
                     GYIGTPTGVVALPLATAARVPWIAPFTGAEALRTPFNRYAFHVRASYFDETAEIVKQL
                     TSVGIKRIAVFYQNDAYGKAGLEGVTRALKPLGLGPESLGTVERNTVDVDAAVKSILA
                     KKPDAIVQISAYKSCAAFIRAARKAGFSGTFYNVSFVGTQALAKELGTDARGVVIAQV
                     MPYPYAPLSLVAGEYIAAGRAALGDKFDPNYSSMEGYVAAKTVVEGLRRGGNNASSEN
                     LITGLESLRDFNLGGFFVDFNAQKHTGSKYVDLTILTSDGRVRH"
     gene            complement(1190..>2042)
                     /locus_tag="VF308_01615"
     CDS             complement(1190..>2042)
                     /locus_tag="VF308_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013542302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435378.1"
                     /translation="REDVFALFGYVGTPTCLAALPLVNAAKIPFFGPFTGAEALRDPF
                     SKVVFHLRASYYDETGLIVRQLTTLGLKKIAVFYQDDAYGKAGLEGVKRALKPMGLEP
                     VGLGTVQRNTVDVGAAVKDIVATRPEAVVQIGAYKSCAAFIRAARKAGYGGTFFNVSF
                     VGTQALAEELGKSGRGVIVSQVMPFPFSTTTPIAREYLDAVRKAGPDAQPNYSSMEGY
                     LAAKVFAEGLRRAGRSPSREALVGGLESIQNASFGGFQVDFGPRDHVASNFVDLSMLT
                     EDGKVRR"
BASE COUNT          323 a          652 c          715 g          352 t
ORIGIN      
        1 gcctcgcgct agtgccgcac ccggccatcg ctcgtcagga tcgtgaggtc gacgtatttc
       61 gaccccgtat gcttctgcgc attgaagtcg acgaagaagc cgccgaggtt gaaatcgcgc
      121 agcgattcca ggccggtgat cagattctct gaagaagcgt tgttgccgcc gcggcgcaag
      181 ccttcgacca ccgtcttggc cgcgacatag ccttccatgc tgctgtagtt gggatcgaac
      241 ttgtcgccga gcgcggcccg gccggcggcg atgtactcgc ccgccaccag gctgagcggt
      301 gcataggggt agggcatgac ctgggcgatg acgacgccgc gcgcgtcggt gccgagctcc
      361 ttggcgagcg cctgcgtgcc gacgaacgag acgttgtaga acgtaccgct gaagccggcc
      421 ttgcgcgccg cacgaatgaa ggcggcacac gatttgtagg cgctgatctg gacgatcgca
      481 tcgggctttt tcgcgaggat cgatttgact gcggcgtcga cgtcgacggt gttgcgctcg
      541 accgtgccca ggctctcggg tccgagcccg agcggtttca aggcccgtgt cacgccttcg
      601 agcccggcct tgccgtaggc atcgttctga tagaagacgg caatgcgctt gatgccgacg
      661 gaggtcagtt gcttgacgat ttcggcggtc tcgtcgaaat acgaggcgcg gacatggaag
      721 gcgtatcggt tgaagggcgt gcgcagcgct tcggcgccgg tgaagggcgc gatccacggc
      781 acccgggccg cggtggcgag cggcaaggcg acgacgccgg tcggcgtgcc gatgtagccg
      841 aacagcgcga acacgccgct gtcgatcagc ttcctggtgt tctcggcgca gcgatcgggt
      901 tcatagccgt cgtcgaggct ctgcagctcg atctgtcggc cgatgatgcc gccgcgctgg
      961 ttgatccgct cgaacagcag ctgtgcgccg atcttgaact gctcgccgag cgcactggcc
     1021 gggccggaca gggccgccga ctggccgagg acgatcctgc cgccctgctg ggcgagcagg
     1081 ggcgcgccga gcgaggccag cccgagcccc gctgccgatc gaatcagttg gcgccgcttg
     1141 atcacgatcg tctcctctgt ggctgtgcgc gggcgcacga tggtccggcc tagcgccgga
     1201 ccttcccgtc ctcggtcagc atggaaagat cgacgaaatt ggaggcgaca tggtcgcgcg
     1261 ggccgaagtc gacctgaaac ccgccgaagc tcgcgttctg gatcgattcg agcccgccga
     1321 ccagggcctc gcgcgagggc gaccgcccgg cgcgcctgag cccttcggcg aacaccttgg
     1381 cggcgaggta gccttccatg ctcgaatagt tgggctgcgc gtcggggccg gccttgcgaa
     1441 cggcgtcgag gtattcgcgc gcaattggcg tcgtggtgct gaacgggaac ggcatgacct
     1501 ggctgacgat cacaccgcgc ccgctcttgc cgagctcttc ggccagggcc tgggtgccga
     1561 cgaaggagac gttgaagaaa gtcccgccgt agccggcctt acgagccgcg cggatgaacg
     1621 cggcgcacga tttgtaggcg ccgatctgca ccacggcttc cggtcttgtg gcgacgatgt
     1681 ccttgacggc cgcgccgacg tccacggtgt tgcgctgcac ggtgccgagc cccaccggct
     1741 cgaggcccat cggcttgagc gcgcgcttca cgccttcgag cccggccttg ccgtaggcgt
     1801 cgtcctggta gaacaccgcg atcttcttca agccgagcgt cgtgagctgc ctgacgatca
     1861 ggccggtctc gtcgtagtag gaggcgcgca ggtggaacac gaccttgctg aacgggtcgc
     1921 gcagcgcctc ggcgccggtg aaggggccga agaacgggat cttcgccgcg ttgacgagcg
     1981 gcagcgccgc caggcaggtc ggcgtgccga cgtagccgaa gagcgcgaag acgtcttccc
     2041 gg
//
LOCUS       DASVHM010000086         3741 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1015737, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000086 DASVHM010000000
VERSION     DASVHM010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3741
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1015737"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VF308_01620"
     CDS             complement(<1..266)
                     /locus_tag="VF308_01620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEX7435379.1"
                     /translation="MKRIGLFGGSFDPVHNAHVALAKVALAQLKLDELRWVPAGQPWQ
                     KARALSDAVHREAMLRLAIADEPRFTLSRIELERGGASYTLDTVR"
     gene            complement(263..1195)
                     /gene="hemF"
                     /locus_tag="VF308_01625"
     CDS             complement(263..1195)
                     /gene="hemF"
                     /locus_tag="VF308_01625"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HEX7435380.1"
                     /translation="MNVQAVRDYLLGLQGRIVAALETEGGDAFITDHWSREPGGALEG
                     EGISRLVEGGVLLERGGCGFSHVKGRSLPASATQHRADLARAPFEAMGVSLVLHPRNP
                     YVPTVHMNVRMLAATPGGAVDGASVVWFGGGMDLTPYYGFEEDARHFHRVNRDALAPF
                     GSELYPKYKKWCDEYFFLKHRNEPRGIGGIFFDDVSEPGVDAAFAMMRAVGDAFLPAY
                     LPIARRRKVLPFGERERGFQAYRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSMPPL
                     AAWRYDWKPEAGTAEAQLYSDFLRPRDWAAEEPA"
     gene            complement(1195..1803)
                     /locus_tag="VF308_01630"
     CDS             complement(1195..1803)
                     /locus_tag="VF308_01630"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEX7435381.1"
                     /translation="MDRFPGALPVQLHGSAIARTLLRLAGWRVAFDGLPAKQGVAIIY
                     PHTSAWDFVIGMLAKSAIGIPVVFWGKDKLFRVPLFGTWLRWLGGVPVDRASPHGIVG
                     QMARELVAARAEGRFLWLALSPEGTRRRAGGWRSGFYHIALEADVPVALAYFDYRERV
                     VGVEHFMIMSGDTEADMAEIGRHLAHRSGRRPELAAPIRLEA"
     gene            complement(1821..3104)
                     /gene="purD"
                     /locus_tag="VF308_01635"
     CDS             complement(1821..3104)
                     /gene="purD"
                     /locus_tag="VF308_01635"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEX7435382.1"
                     /translation="MKVLVIGGGGREHALAWKLAQSPKVQKVFVAPGNAGTGADPLLQ
                     NVAIADHDVLADFAHGEKVALTVVGPEAMLAAGVVDLFRARGLRIFGPTRAAAQLESS
                     KAFAKEFMRRHRIPTAAFQAFDAAAPAHAHVEKSGAPIVVKADGLAAGKGVVVATSLA
                     EAHAAIDSMLVGASGAQIVIEEFLEGEEASFIVLCDGRNVVPLATSQDHKRLADGDLG
                     PNTGGMGAYSPAPVVTPNVHARAMHEIILPAVAGMAQDGVPFSGFLYAGLMIDAHGQP
                     RTVEFNCRLGDPEAQVLLMRLKSDLFDVLMHATAGSHEGTLDEVELQWDRRSALGVVM
                     ASAGYPAQPRSGDPIDGLPQPGTDAPGDDAMVFHAGTALRDGRVVTAGGRVLCVTALG
                     DSVKLAQQRAYQVVHGIHFDGAQYRRDIGHRAIKR"
     gene            complement(3130..>3741)
                     /locus_tag="VF308_01640"
     CDS             complement(3130..>3741)
                     /locus_tag="VF308_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011801127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEX7435383.1"
                     /translation="GGGDLGMNPRLRLAVEKAKAANMPADTVKKNIDKATGSLEGVHF
                     EEVRYEGYGIGGAAIIVDCMTDNRVRTVAEVRHAFSKYGGNLGTEGSVAFQFRHCGQF
                     VFAPGTSEDRLMEVALEAGADDVVSDADGAVEVLCGPAEFEAVKAALEGAGLVPEIAE
                     VTMRPENTIELAGEEGQRMQKLLDVIEDLDDVQALYHNAEISQ"
BASE COUNT          583 a         1313 c         1282 g          563 t
ORIGIN      
        1 cgcacggtgt cgagcgtgta gctcgcgccg ccccgttcga gttcgatgcg cgacagcgtg
       61 aagcgcggtt cgtcggcgat cgccagcctc agcatggctt cgcggtggac cgcatcggac
      121 agcgcgcgcg ccttctgcca cggctgcccg gccggaaccc agcgcaactc gtcgagcttc
      181 aactgcgcaa gcgcgacctt ggcgagcgcg acgtgggcgt tgtgcaccgg atcgaaactg
      241 ccgccgaaga ggccgatccg tttcaagcag gctcctccgc ggcccagtcg cgcgggcgca
      301 ggaagtcgct gtagagctgg gcttcggccg tgcccgcttc cggcttccag tcgtagcgcc
      361 atgccgccag cggcggcatc gacatcagga tgctttcggt gcggccgccc gattgcagcc
      421 cgaacagcgt gccgcggtcg aacaccaggt tgaattcgac gtagcggccg cgccgatagg
      481 cctggaagcc gcgctcgcgc tcgccgaaag gtagcacctt gcggcggcgg gcgatcggca
      541 gataagcggg caggaaggca tcgccgaccg cgcgcatcat cgcgaacgcg gcgtcgacgc
      601 cgggctccga gacatcgtcg aagaagatgc cgccgatgcc gcgcggctcg ttgcggtgct
      661 tgaggaagaa gtactcgtcg caccacttct tgtacttcgg gtagagctcg cttccgaacg
      721 gcgcgagcgc atcgcgattg acgcggtgga aatgacgcgc gtcctcctcg aagccgtagt
      781 acggcgtcag gtccatcccg ccgccgaacc agaccaccga cgcgccgtcc acagcgccgc
      841 cgggcgtggc cgcgagcatg cgcacgttca tgtgcacggt cggcacatac gggttgcgcg
      901 gatgcaagac cagcgaaacc cccatcgcct cgaagggcgc ccgcgcgaga tcggcgcggt
      961 gctgggtcgc cgaggccggc agcgaccggc ccttcacatg cgagaagccg cagccgccgc
     1021 gctcgagcag caccccgcct tcgaccagcc tcgagatgcc ctcgccttcg agcgcgccac
     1081 cgggctcgcg cgaccaatga tcggtgatga aggcgtcgcc gccttcggtc tcgagcgcgg
     1141 cgacgatgcg gccctgcaag ccgaggagat agtcgcggac ggcttgcacg ttcatcaggc
     1201 ctccagccgg atcggcgccg cgagctccgg ccggcggccg gaccgatgcg caaggtggcg
     1261 tccgatctcc gccatgtcgg cctccgtgtc gccgctcata atcatgaagt gttcgacgcc
     1321 gacgacgcgt tcgcggtagt cgaaataggc gagggcgacc ggcacgtcgg cttcgagcgc
     1381 gatatggtag aagcccgagc gccacccgcc ggcgcgccga cgcgtgcctt cgggggaaag
     1441 cgccagccac aggaagcgcc cttcggcgcg cgccgcgacg agttcgcggg ccatctgtcc
     1501 gacgatgccg tgcggcgaag cgcggtccac cggcacgccg ccgagccagc gcagccaggt
     1561 gccgaacagc ggcacccgaa agagcttgtc cttgccccag aacacgaccg ggatgccgat
     1621 cgccgatttc gcgagcatgc cgatcacgaa atcccaggcc gacgtgtgcg gatagatgat
     1681 cgcgacaccc tgcttggccg gcaggccgtc gaaggcgacg cgccagccgg ccagccgcag
     1741 cagggtgcgg gcaatcgcgc tgccgtgaag ctggaccggg agcgcgccag ggaacctgtc
     1801 catgaacgag gtcgcgtcgg tcaccgcttg atggcgcggt ggccaatgtc gcgccgatac
     1861 tgcgcgccgt cgaagtggat gccgtgcacg acctggtacg cgcgctgctg ggcgagcttg
     1921 accgaatcgc cgagggcggt cacgcacagc acgcggccac cggccgtcac gacccggccg
     1981 tcgcgcaacg cggtgccggc atggaacacc atcgcgtcgt cgccgggtgc gtcggtaccc
     2041 ggctgcggca ggccatcgat cgggtcgccg ctgcgcggct gcgccggata gccggcggac
     2101 gccatcacga cgccgagcgc gctgcggcga tcccactgga gctcgacttc atcgagcgtg
     2161 ccttcgtggc tgccggcggt cgcgtgcatc agcacgtcga acaggtcgct cttgagccgc
     2221 atcaacagca cctgggcttc cgggtcgccg aggcggcagt tgaactcgac ggtgcgcggc
     2281 tgcccgtgcg catcgatcat caagccggca tagagaaacc cgctgaacgg cacgccgtcc
     2341 tgcgccatgc cggccaccgc cggcaggatg atctcgtgca tcgcccgggc atggacgttc
     2401 ggcgtgacga ccggcgctgg cgagtacgcg cccatgccgc cggtgttcgg gccgaggtcg
     2461 ccgtcggcga ggcgcttgtg gtcctggctg gtcgcgagcg gcaccacgtt gcggccgtcg
     2521 cacagcacga tgaaactggc ctcctcgccc tcgagaaatt cctcgatcac gatctgcgca
     2581 ccggacgcgc cgaccagcat cgagtcgatc gcggcgtggg cctcggcgag gctggtcgcg
     2641 acgacgaccc ccttgccggc cgcgaggccg tcggccttga cgacgatcgg cgcgccgctc
     2701 ttctcgacat gcgcgtgggc cggcgcggca gcgtcgaagg cctggaacgc cgcagtcggg
     2761 atgcgatgcc gccgcatgaa ctccttcgcg aacgcctttg agctttcgag ctgcgccgcg
     2821 gcccgcgtcg gcccgaagat gcgcaagccg cgggcccgaa acaggtcgac gacgccggcg
     2881 gcgagcatcg cctcggggcc gaccacggtc aacgcgacct tctcgccgtg tgcgaagtcg
     2941 gcgagcacgt cgtgatcggc gatcgcgacg ttctgcagca acgggtcggc cccggtgccg
     3001 gcgttgcccg gcgcgacgaa gaccttctgc accttcggcg actgcgccag cttccaggcc
     3061 agcgcgtgct cgcggccgcc cccgccgatc accagaacct tcatggcgtc aggcgccggg
     3121 agcgcgcaat cactgcgaaa tctcggcgtt gtgatagagc gcctggacgt cgtccaggtc
     3181 ttcgatcacg tcgaggagct tttgcatgcg ctggccttcc tcgccggcga gttctatggt
     3241 gttttccgga cgcatcgtca cttcggcgat ctcgggcacg aggcccgcgc cttcgagcgc
     3301 cgccttgacg gcctcgaatt cggccgggcc gcacaacacc tcgacggcgc cgtcggcgtc
     3361 gctgaccaca tcgtcggcgc cggcttcgag cgcgacttcc atcagccggt cttcgctggt
     3421 gccgggcgca aacacgaact ggccgcagtg cctgaactgg aatgcgaccg aaccttcggt
     3481 gccgaggttg ccgccgtact tgctgaacgc atggcggacc tcggcgaccg tgcgaacccg
     3541 gttgtcggtc atgcagtcga cgatgatggc cgcgccgccg atgccgtagc cctcatagcg
     3601 gacctcctcg aagtgaacac cctcgaggct gccggtggcc ttgtcgatgt tcttcttgac
     3661 ggtgtcggcc ggcatgttgg cggccttcgc cttttcgacc gccaggcgca gacgcgggtt
     3721 catgccgaga tcgccgccgc c
//
LOCUS       DASVHM010000087         5107 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1159145, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000087 DASVHM010000000
VERSION     DASVHM010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5107
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1159145"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..1936
                     /locus_tag="VF308_01645"
     CDS             125..1936
                     /locus_tag="VF308_01645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435384.1"
                     /translation="MAPRLKKLNRVATGLPKASAQADADIERAAKLVQALDPAGSADL
                     QARLKALQDQKKTAWPGGSTLDEIDASVDALTNGAQTLIADAEAFKNKLALDQEIAKL
                     RARLDALKPRIDQCAQSPVPAYIEQRQKNVQGLVAVLENQLANGKKGPAETSLAALML
                     ALDDTEKFKALYAAHLVKLNAAKNGPIKAALALKLAPPDLAASRDKAMAAREREIEAK
                     TVDGVFGPADSAIDEWALEAKAWGSAKKAYDNLHTKKPDAGTLADLGDAKGGGPVLDA
                     LVADMPTDTTPPQVFITAMKARYGVEVEQFEHRKDGGKSEDPDKKTRLDPTKPDPDQE
                     KDLQGLYKVLGKVPVKDVKYVEKINRFTKDLESATYSGGIFTDTIALHCGRPGDPINT
                     DFNKPGEVVPLGESVNPDCAPLKPGDTTPWFDFTVMHEVGHAVDDARNIMSGGRDKDA
                     AWDTHGTGAVAKKIAAQVHYDADYIESMLDDKASTPPKKKPKLPQGWKQVDWDKARGD
                     AEAWVKAIRVGQKLWDNAAGSKDHAIGGRVYHEAYDDTWVSYSYAARSQGITGYQFRA
                     PAEWFAELYAAFHSGKLNPKHPAAPWLRKIKAESKTA"
     gene            1958..2659
                     /locus_tag="VF308_01650"
     CDS             1958..2659
                     /locus_tag="VF308_01650"
                     /inference="COORDINATES: protein motif:HMM:NF025711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpXC domain-containing protein"
                     /protein_id="HEX7435385.1"
                     /translation="MSLFKTTNLACPSCGKALSFETVYSVNADRRPDLRKAILAGEFQ
                     RMDCPKCAARFRLDPDFNYLDVARSQWIVAAPVAGMADWKRREDAARELFQRAYGKAA
                     PDVAQDIGAKLKPRITFGWPALREKVLAAEHGLDDVALEACKAAVMRGVKGLPVSAEF
                     DLRLADVEGDHLVMAWLRSYDSAEGDAVKLPRSLHASVVADPTGAWASLRQEFDGALF
                     VDLNRMLVAQPKAAA"
     gene            2796..4250
                     /locus_tag="VF308_01655"
     CDS             2796..4250
                     /locus_tag="VF308_01655"
                     /inference="COORDINATES: protein motif:HMM:NF024484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3943 domain-containing protein"
                     /protein_id="HEX7435386.1"
                     /translation="MTLCRCVDAFFALMMCALNVCAEPVAPIAGSSPAPGASAPVSHA
                     LPADRPQVQAEPNPRLAATEIVAFEVLLNRANHSFGSGRDDYRVTMESIRRNLRSGWG
                     TDKDPFKTNQLGHPVQGAMYQGFARSAGLDYWQSAGLSFAGSALWEIAGEQTHPSRND
                     QVASGIGGTFLGEALFRMSNLVLEQGGGMPRFWREIAATAIAPSAGFNRLAFGDRYGA
                     IFSSHDAAYFSRLQLGYSGSVKRELGTSTSDIKRNEAQVAFSIDYGLPGKPGYAYTRP
                     FDYFNFQTTASSANGIENVMTRGLLLGRSYEAGPNYRGVWGLYGSYDYIAPQTYRISS
                     TALSVGSTAQWWLGESLSLQGTAMAGVGYAAVGTTHGAVGERDYNYGVAPQALLDLRL
                     TRGDNTSLDLTLREYFVSNFASGTSGGHDNIVRADVSFTFRVSKQQAVTIKLLDNRRD
                     ASFSTLGARRQTQMTVGIFYTLLGQDRLGAVEWR"
     gene            complement(4287..4745)
                     /locus_tag="VF308_01660"
     CDS             complement(4287..4745)
                     /locus_tag="VF308_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX7435387.1"
                     /translation="MTTAFTPNAKNHANLGPRASRVVKANDMPWEPIRYPGVYVKTLM
                     LDRQSGLLTVLLKMEPGAELPDHEHALMEQTYVLEGCLVDRDGPESGLSVGPGEFVYR
                     PPGSRHSACAPEGSLMVAIFQVPNKFFESDGRVVDLIGDEWHAKWGHVTV"
     gene            complement(4805..>5107)
                     /locus_tag="VF308_01665"
     CDS             complement(4805..>5107)
                     /locus_tag="VF308_01665"
                     /inference="COORDINATES: protein motif:HMM:NF039315.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HEX7435388.1"
                     /translation="GFWPGSDATPRAAFYSYAYPTPQGFAQAKVEPVGAVWAAEMGEW
                     LLAYDTVRTAADPDAALLRFLETTYRAAADMARWDPSLECAIGIPGRPRPVHAAAG"
BASE COUNT          925 a         1751 c         1688 g          743 t
ORIGIN      
        1 acccaggcgg ccatcacgac ccttccggca gcaccgaagg ccggcctgca gcaagagctc
       61 ggcaccctga gccgacatca agcgttactc cgaggcggcg gacagcacgg cgctgcaatc
      121 gatcgtggcg ccgcgcctga agaagctgaa ccgcgtcgcg accggactgc ccaaggcgtc
      181 ggcgcaggcc gacgccgaca tcgagcgcgc tgccaaactc gtgcaggcgc tcgaccctgc
      241 cggcagcgcc gacctgcagg cccggctcaa ggcgctgcag gaccagaaga agacggcctg
      301 gcccggcggc agcacgctcg atgagatcga cgcttccgtg gatgcgctga cgaacggcgc
      361 gcagacgctg atcgccgacg ccgaggcgtt caagaacaag ctggcgctcg atcaggagat
      421 cgccaagctg cgcgcgagac tcgacgcctt gaagccgcgc atcgatcaat gcgcgcagag
      481 cccggtgccg gcgtacatcg agcagcgcca gaagaacgtg cagggcctgg tggcggtgct
      541 ggagaaccag ctggcgaacg gcaagaaggg ccccgcggaa acgtcgctcg ctgcgctgat
      601 gctcgcgctc gacgacacgg aaaagttcaa ggccttgtat gcggcgcacc tggtcaagct
      661 caacgccgcg aagaacggcc ccatcaaggc ggcgctggcg ctcaagctcg cgccgcccga
      721 cctggccgcg tcgcgcgaca aggccatggc cgcgcgcgag cgcgagatcg aagcgaagac
      781 cgtcgacggc gtgttcggcc cggccgactc ggcgatcgac gagtgggcgc tcgaagccaa
      841 ggcctggggt tcggcgaaga aggcctacga caacctgcac acgaagaagc cggacgccgg
      901 cacgctggcc gacctgggcg acgccaaggg cggcggcccg gtgctcgacg cgctggtcgc
      961 cgacatgccg accgacacca cgccgccgca ggtcttcatc accgcgatga aggcgcgcta
     1021 cggcgtcgag gtcgagcagt tcgagcaccg caaggacggc ggcaagagcg aagaccccga
     1081 caagaagacc cgcctcgacc ccacgaagcc cgaccccgat caggagaagg acctgcaggg
     1141 cctctacaag gtgctcggca aagtgccggt gaaggacgtg aagtacgtcg aaaagatcaa
     1201 ccgcttcacg aaggatctcg aaagcgccac ctacagcggc ggcatattca ccgacacgat
     1261 cgcgttgcac tgcggtcggc ccggcgatcc catcaacacc gatttcaaca agcccggcga
     1321 ggtggttccg ctcggcgaat cggtcaaccc cgactgcgcg ccgctgaagc cgggcgacac
     1381 gacgccctgg ttcgacttca cggtgatgca cgaagtcggg cacgcggtcg acgacgcgcg
     1441 caacatcatg agcggcgggc gcgacaagga cgcggcctgg gacacgcacg gcacgggcgc
     1501 ggtggccaag aagatcgccg cgcaggtgca ctacgacgcc gactacatcg aatcgatgct
     1561 ggacgacaag gcgagcacgc cgccgaagaa gaagccgaag ctgccccagg gctggaagca
     1621 ggtcgactgg gacaaggccc gcggagatgc cgaggcctgg gtgaaggcga tccgcgtcgg
     1681 ccagaaactg tgggacaacg ccgccggctc gaaggaccat gcgatcggcg ggcgcgtgta
     1741 ccacgaggcc tacgacgaca cctgggtgag ctacagctac gcggcccgtt cgcagggcat
     1801 caccggctac cagttccggg cgccggccga atggttcgcc gagctgtacg cggccttcca
     1861 cagcggcaag ctcaacccca agcacccggc cgccccgtgg ctgcgcaaga tcaaggcgga
     1921 atcgaagaca gcctgaggct gcccacagga gcgtcgaatg tccctcttca agaccaccaa
     1981 cctggcgtgc ccgtcgtgcg gcaaggccct ctcgttcgag acggtgtaca gcgtcaacgc
     2041 cgaccggcgg cccgacctgc gcaaggccat tctggccggc gagtttcagc gcatggactg
     2101 ccccaagtgc gccgcacgct tccggctcga cccggacttc aactatctcg acgtggcccg
     2161 cagccagtgg atcgtggccg cgcccgtcgc cggcatggcc gactggaagc ggcgtgagga
     2221 cgccgcgcgc gagctgtttc agcgcgccta cgggaaagca gcgccggacg ttgcgcagga
     2281 catcggcgcc aaactcaagc cacgcatcac cttcggctgg ccggccttgc gcgaaaaggt
     2341 gctggccgcc gagcatggtc tggacgacgt ggccctcgaa gcctgcaagg ctgccgtgat
     2401 gcgcggcgtc aagggcctgc cggtgtcggc cgaattcgac ctgcgcctgg ccgacgtgga
     2461 gggcgatcat ctcgtcatgg cctggctgcg cagctacgac agcgccgagg gcgacgcggt
     2521 caagttgccg cgcagcctgc acgcgtcggt cgtggccgac cccaccgggg catgggccag
     2581 cctgcgccag gaattcgacg gcgcgctctt cgtcgacctg aaccgcatgc tcgtggcgca
     2641 gccgaaggcg gcggcttagt tagattagaa cctgtccgtt cccggcttca gcgcgtttca
     2701 cttcagccga ggcgcacgtc ttcctacagg tgtcgacgcc gcgagcggcg aacatggcca
     2761 ttcgccgtca agtgccggtt gctggagaac gacgaatgac cctctgtcgc tgcgtcgatg
     2821 ccttcttcgc gctgatgatg tgcgccctga acgtctgcgc cgagccggtc gcgccgatcg
     2881 ccgggtcgag cccggcgccg ggcgcatcgg cgccggtttc gcacgctctg cctgccgatc
     2941 gcccgcaagt ccaggccgag ccgaaccctc gcttggcggc gaccgagatc gtcgccttcg
     3001 aggtcctcct caaccgcgcg aaccacagct tcggcagcgg ccgcgacgac taccgggtca
     3061 cgatggagag catccggcgc aatctgcgca gcggctgggg caccgacaag gatcctttca
     3121 agacgaatca gctcggtcac ccggtccaag gcgccatgta ccaaggcttc gcccgatcgg
     3181 cgggcctcga ctactggcag tcggccgggc tttccttcgc cggcagcgcg ctctgggaga
     3241 tcgccggcga gcaaacccac ccgtcgcgca acgatcaggt ggccagcggc atcggcggga
     3301 cctttctcgg cgaggcgctg tttcgcatgt ccaacctcgt gctcgaacag ggcggcggca
     3361 tgccgcgctt ctggcgcgag atcgcggcga cggcgatcgc gccttccgcg ggcttcaacc
     3421 ggctcgcttt cggcgaccgt tacggcgcca tcttctcgag ccacgacgcc gcctatttca
     3481 gccgccttca gctgggctac agcggcagcg tgaagcgcga actcggcacc tcgacctccg
     3541 acatcaagcg caacgaggcg caggtcgcat tctcgatcga ctacggcctt cccggcaagc
     3601 ccggctatgc atacacccgg ccgttcgact acttcaactt ccagacgacg gcctcgagcg
     3661 ccaacggcat cgagaacgtg atgacgcgcg ggctgctcct gggcaggagc tacgaagccg
     3721 gcccgaacta ccgcggcgtg tggggcctgt acggcagcta cgactacatc gcgccgcaaa
     3781 cgtatcgcat ttcgagcacc gccctttccg tcggctcgac ggcacagtgg tggctcggcg
     3841 aatcgctctc gctgcaaggc acggcgatgg cgggtgtcgg ctatgcggcg gtcggaacga
     3901 cgcacggcgc cgtgggcgag cgcgactaca actacggcgt cgcgccgcag gctttgctcg
     3961 acctgcgcct cacgcgcggc gacaacacgt cgctcgatct gacgctgcgc gagtacttcg
     4021 tcagcaactt cgcctccggc accagcgggg gccacgacaa catcgtgcgc gccgacgtgt
     4081 cgttcacctt ccgcgtcagc aagcagcagg cggtcacgat caaattgctg gacaaccgtc
     4141 gcgacgccag tttctcgact ctcggagcga ggcggcaaac gcagatgacg gtcgggatct
     4201 tctacacgct gctgggccag gaccggctcg gagcggtcga atggcgctga tcgcctcgca
     4261 tagccgcgct gcggtccacg cttcgatcag acggtgacgt gtccccactt ggcgtgccac
     4321 tcgtcgccga tgaggtcgac gacccggccg tcggattcga agaacttgtt gggcacctgg
     4381 aagatcgcaa ccatcaggct gccttccggc gcgcaggccg aatgccggct tcccggcgga
     4441 cggtagacga attcaccggg gccgaccgac aggccgctct ccggtccgtc gcggtcgacc
     4501 aggcaccctt cgaggacata ggtctgttcc atcagcgcat gctcgtgatc gggcagttcg
     4561 gcgcccggtt ccatcttgag caataccgtc agcaggccgc tttgtctgtc gagcatcagc
     4621 gtcttcacat agacacccgg atacctgatc ggctcccacg gcatgtcgtt ggccttgacc
     4681 acccgcgatg cgcgcggacc gaggttggcg tggttcttcg cgttgggtgt gaaggcggtg
     4741 gtcatcgtga atttgtctcc ggtgatgatg gatggagcgc tgcgagatgc ggcaggcaac
     4801 gcgttcagcc ggcggccgcg tgcaccggtc tcggccggcc cgggatgccg atggcgcatt
     4861 ccagactcgg atcccaccgc gccatgtccg ccgctgcacg ataggtcgtt tccaggaagc
     4921 ggagcagcgc ggcgtcagga tcggccgccg tccggaccgt gtcgtacgca agcagccatt
     4981 cgcccatctc cgcggcccag accgccccga cgggctcgac cttcgcctgc gcgaaacctt
     5041 gcggcgtcgg atacgcgtat gaatagaacg cggcgcgagg ggttgcgtca ctgcccggcc
     5101 agaagcc
//
LOCUS       DASVHM010000088         4677 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_871691, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000088 DASVHM010000000
VERSION     DASVHM010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4677
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_871691"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1229
                     /gene="glnS"
                     /locus_tag="VF308_01670"
     CDS             <1..1229
                     /gene="glnS"
                     /locus_tag="VF308_01670"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011795413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HEX7435389.1"
                     /translation="ARLRDMKAGKLADGAATLRAKIDMASPNINLRDPALYRIKRATH
                     HNTGDAWCIYPMYTYAHPIEDALEQITHSICTLEFEDQRPFYDWLLDTLCSLGLLAQP
                     RPHQYEFARLNVTHVVTSKRKLKQLVDEKFVDGWDDPRMPTIAGLRRRGYTPDAIRLM
                     CERAGTSKAGGWTDYASLDNALRDDLDGKAQRAMAVLDPVKLKLVNWAEVFGSNAHRE
                     PCHAPAHPQRPELGQREFSLGPEVWIERDDFAEAPAKGFFRLFPGNRVRLKYGVVIEC
                     SGCEKDGDNLTAVLANVVPDTRSGTPGADAVKVKGTITWVGVDDARHVEVRLYDRLFT
                     DEQPELGGRDLRSSLNPRSKKVVSAFVEPSLANAKPDAKFQIERHGYFVADRVDHTTG
                     RPVFNRIAGLRDSWAK"
     gene            1332..1613
                     /locus_tag="VF308_01675"
     CDS             1332..1613
                     /locus_tag="VF308_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEX7435390.1"
                     /translation="MIVDFADKETERIWQGTVSRRLPTNIQQKARLKLRMLNAANRLE
                     DLRVPPAKRLEALVGERKGQYSIRINDQWRICFRWNAGQAAGVQIVDYH"
     gene            1626..1916
                     /locus_tag="VF308_01680"
     CDS             1626..1916
                     /locus_tag="VF308_01680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019936373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HEX7435391.1"
                     /translation="MATLRNIHPGEVLNDEFLEPMHLSQNALARAISVPPRRINEIVL
                     GKRGITADTALRLAKAFGISAEFWMNLQASYDLEEAQKAIAPVLRTVELLAA"
     gene            complement(2145..2744)
                     /locus_tag="VF308_01685"
     CDS             complement(2145..2744)
                     /locus_tag="VF308_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013543671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435392.1"
                     /translation="MMKKLLVATLALVCTLALAQTPPPTQRLRGTVQSFDGSTLVLAE
                     RSGATLTLVLADNFSVSEVVPVAPGAIQPGSFVGTAALPAADGTLSALEVLVFPEAAR
                     GSGEGHYPWDLQPGSTMTNATVAELAAAPQGRSMKLRYKDGEKTVVVPDNVPIVTFKP
                     GDKSLLVPGAKVVVFAQSREGKPTALRALAGRDGFAPPM"
     gene            complement(2997..3521)
                     /locus_tag="VF308_01690"
     CDS             complement(2997..3521)
                     /locus_tag="VF308_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019140064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435393.1"
                     /translation="MDNNKPLVTGLFRDRDSAERAYQSVSERGYTKDDVNLAMSDETR
                     KRHFGDAAGRPTELGNKAAEGAGIGGAIGGSLGAIAAAIAAVGTTIALPGLGLVIAGP
                     LAAAIAGAGAGAATGGIVGALIGWGIPEERVKQYDKGIREGGILMAVRPRSDEDAAHI
                     ESSWRSNRGEQIYR"
     gene            complement(3702..3911)
                     /locus_tag="VF308_01695"
     CDS             complement(3702..3911)
                     /locus_tag="VF308_01695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435394.1"
                     /translation="MRKPFATVRGRPFRLYLLGLALIFAGAWAMGESGSMVPMALAAS
                     AGLMLGAPLLRQLLRRAVLRDDPPR"
     gene            4148..>4677
                     /locus_tag="VF308_01700"
     CDS             4148..>4677
                     /locus_tag="VF308_01700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006384409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbosone dehydrogenase family protein"
                     /protein_id="HEX7435395.1"
                     /translation="MFPSIRKRALVIALTAIGLTACGETARLTVDAGSGPNPQLPAPT
                     KTLFPTVHIAPAKGWSEGNAPLPATGLTVTAFAKGLDHPRWLHVLPNGDVLVAETNAP
                     PKPEDSKGLKGWVIQMVMRKAGAATPSANRITLLRDADGDGVAETRTTFIEGLNSPFG
                     MALAGNDLYVADTDAVL"
BASE COUNT          868 a         1579 c         1523 g          707 t
ORIGIN      
        1 tggctcgcct gcgcgacatg aaggccggca agctcgccga cggcgccgcg acgctgcgcg
       61 cgaagattga catggcgagc ccgaacatca acctgcgcga tccggcgctc taccgcatca
      121 agcgcgcgac ccaccacaac accggcgacg cctggtgcat ctacccgatg tacacgtatg
      181 cgcatccgat cgaggacgcg ctcgagcaga tcacccacag catctgcacg ctcgagttcg
      241 aagaccagcg tcccttctac gactggctgc tcgacacgct gtgcagcctc ggcctgctcg
      301 cccagccgcg cccgcaccag tacgagttcg cgcggctcaa cgtcacccac gtggtcacga
      361 gcaagcgcaa gctgaagcag ctcgtcgacg aaaagttcgt cgacggctgg gacgacccgc
      421 gcatgccgac gatcgcgggc ctgcgccggc gcggctacac gccggatgcg atccgcctga
      481 tgtgcgagcg cgccggcacc agcaaggccg gcggctggac cgactacgcg agcctcgaca
      541 acgcgctgcg tgacgacctc gacggcaagg cgcagcgcgc gatggcggtg ctcgacccgg
      601 tgaagctcaa gctcgtgaac tgggccgaag tcttcggcag caatgcgcac cgcgagccct
      661 gccacgcccc ggcgcatccg caacggcccg aactcggcca gcgcgagttc agcctcggcc
      721 ctgaggtctg gatcgagcgc gacgatttcg ccgaagcccc ggccaagggc ttcttccggc
      781 tctttcccgg caaccgggtg cggctcaagt acggcgtcgt gatcgagtgc agcggctgcg
      841 aaaaggacgg cgacaacctc accgcggtgc tcgcgaacgt cgttcccgac acccggagcg
      901 gcacgcccgg cgccgacgcg gtcaaggtga aaggcacgat cacctgggtc ggcgtggatg
      961 acgcgcggca cgtcgaagtg cgcctctacg accggctctt caccgacgaa caacccgagc
     1021 tcggcgggcg cgacctgagg tccagcctga acccccgcag caagaaggtc gtgagcgcct
     1081 tcgtcgaacc gtcactcgca aacgcgaagc ccgacgccaa gttccagatc gagcggcatg
     1141 gctacttcgt cgcagatcgg gtcgatcaca cgacgggaag gccggtattc aatcggattg
     1201 cagggttaag agacagctgg gcgaagtagc gttgaagaat cgaggcatga acgagccagg
     1261 cccaaggcag gcgacgtcgg agcaggccca taacgcttgg cgttatatga cgctatccgt
     1321 tatagttgtt catgattgtc gacttcgccg acaaggagac ggaacgaatc tggcaaggga
     1381 cggtgtcgcg gcgactgccg accaacatcc agcagaaggc gcgtttgaaa ttgcgcatgc
     1441 ttaacgcagc aaaccgcttg gaagaccttc gtgttccacc ggccaagcgt ctggaggcac
     1501 tggtcggcga acgcaaaggc caatacagca tacgcatcaa cgaccaatgg cgaatctgct
     1561 ttcgctggaa cgccggtcag gccgcgggcg tgcagatcgt cgactatcac tgaaggaggt
     1621 tactcatggc cacgctgcgc aacatccatc ccggcgaagt gctgaacgac gagtttctcg
     1681 agccgatgca cctgagtcag aacgccctcg cccgcgcaat cagtgtgccg ccacgacgca
     1741 tcaacgagat tgtgctcggc aagcgcggaa tcactgcgga cacggcattg cgacttgcca
     1801 aggccttcgg aatttcagcc gagttctgga tgaacctgca ggctagctat gacctggaag
     1861 aggcgcagaa agcgattgca cctgtgcttc gaaccgtcga gttgcttgca gcttagaaat
     1921 gcttgaacgt cgcgggcgta gcttgtcaag caaagtgaaa gcccgagcga ccttcgtcga
     1981 tgtacgaaga gtcgacggac ctgaagagaa acctgcaccc tgtgttcgca ttcatgagcg
     2041 acaacaaatc gtgaggtctc tactacgctg ggcgggcagc aagaggcagc tacttccaaa
     2101 gccagacgtt cttgagaact atcgtccgga gggcgctacg tcgctcacat cggcggcgcg
     2161 aacccgtccc ttcccgccag cgcccgcagc gccgtgggct tgccctcgcg cgactgcgcg
     2221 aacaccacga ccttcgcgcc cggcacgagc agcgacttgt cgcccggctt gaaagtgacg
     2281 atcggcacgt tgtcgggcac gaccacggtc ttctcgccgt ccttgtagcg cagcttcatg
     2341 ctgcggccct gcggcgccgc ggcgagttcg gcgacggtcg cgttggtcat cgtgctgccc
     2401 ggctgcagat cccagggata gtgcccttcg ccgctgccgc gcgcggcttc gggaaaaacg
     2461 agcacttcga gcgcgctcag cgtgccgtcg gcggccggca gcgccgcggt gccgacgaag
     2521 ctgccgggct ggatcgcccc cggcgcgacc ggcacgacct cgctgacgct gaaattgtcg
     2581 gcaagcacga gcgtgagagt ggcgccgctg cgctcggcga gcacgagcgt gctgccgtcg
     2641 aacgactgca cggtgccgcg caggcgctgc gtcggtggcg gtgtctgcgc cagcgcgagg
     2701 gtgcagacca gcgcgagggt ggcgacgaga agcttcttca tcatggttcg acctccgggg
     2761 tggcgacggg agtcacggtc gctgcgcgaa gcaagtcgag aaaggcgacc aatggatcag
     2821 cagttcgacg gcgtccaagc ggttctccta gcgacgggtg ggccattctc gcgaaaaacc
     2881 cgtctcatgg tgggccggcc gacgcgaacg ggccatcggt cgactgccgc agacgacaaa
     2941 cgcgcctcga gggcgcgcct gcggcgtcac gaggacgcct ttgcattcgc gtgcgcttag
     3001 cgatagattt gttcgccgcg attgctgcgc caggaactct cgatgtgcgc cgcgtcttca
     3061 tcgctgcgcg gccgcacggc catcaggatg ccgccttcgc ggatgccctt gtcgtactgc
     3121 ttgacgcgct cttcggggat gccccagccg atcagcgcgc cgacgatgcc acccgtcgcc
     3181 gcacccgcgc cggcacccgc gatcgcggcg gccaacgggc cggcgatcac gaggccgagg
     3241 cccggcaagg cgatggtcgt gccgaccgca gcgatcgccg cggcgatggc gccgaggctg
     3301 ccgccgatcg cgccgccgat gcccgcgccc tcggcggcct tgttgccgag ttcggtcggg
     3361 cgccccgccg cgtcgccgaa atggcgcttg cgtgtctcgt ccgacatcgc caggttcacg
     3421 tcgtccttgg tgtatccgcg ctccgatacg gattggtagg cgcgctccgc gctgtcgcgg
     3481 tcgcgaaaga ggccagtcac cagcggcttg ttgttgtcca tcattgctcc tgaaggttga
     3541 atgaagaaat tcgacgaacg gcctgtctgc cgtctgtctg gacgcaagga tggaggccgc
     3601 gacggcgcgg caaaaccgga atcggccgcg cgcgcaggtc atcccaacga tccggccgct
     3661 gtgagccggg tcctacagtc gtcgcggcgc ggcgccgccg atcagcgtgg cgggtcgtcg
     3721 cgaaggaccg cgcgccgcag caactggcgc agcagcggcg cgccgagcat cagcccggcc
     3781 gatgcggcaa gggccatcgg caccatcgag ccggattcgc ccatggccca ggcccccgcg
     3841 aagatcagtg caagaccgag caggtagagc cggaaggggc ggcctcgaac ggtggcgaaa
     3901 ggcttgcgca tcgtggactc catcgggaca cgccagtctg gcagcgcagg cgcgttttcg
     3961 ggcgtgaaaa agagccgcgt ttgcgacttc ggacagcgcc cgacgcgtcg ccgatcgcgc
     4021 ccgcttccga caagacgccg cgcctcgggc cgacagcccg aaggtaaacc accttcaaga
     4081 atggcgcgat cgcgcagact cgcgcgccat cgcatcgacc cttcggggtc caccacgaga
     4141 cagagccatg ttcccgtcca ttcgcaagcg cgccctcgtc atcgctctca ccgccatcgg
     4201 cctgacggcc tgcggcgaaa ccgccagact cacggtcgat gccggatcgg gtccgaaccc
     4261 gcagctgccg gcgccgacca agaccctctt cccgacggtc cacatcgcgc cggccaaggg
     4321 gtggagcgaa ggcaatgcgc cgcttcccgc gaccgggctg acggtgaccg ccttcgccaa
     4381 ggggctcgac catccgcgtt ggctccatgt gctgccgaac ggcgacgtgc tggtcgccga
     4441 aacgaacgcg ccgcccaagc ccgaggacag caagggcctc aaaggctggg tgatacagat
     4501 ggtgatgcgc aaggccggcg ctgcgacgcc gagcgcgaac cgcatcacgc tgctgcgcga
     4561 tgccgacggg gatggcgtcg ccgaaacgcg aacaaccttc atcgagggcc tcaactcgcc
     4621 cttcggcatg gccctggcgg gcaacgacct ctacgtcgcc gacaccgacg ccgtcct
//
LOCUS       DASVHM010000089         2617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1015994, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000089 DASVHM010000000
VERSION     DASVHM010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1015994"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1034)
                     /gene="purB"
                     /locus_tag="VF308_01705"
     CDS             complement(<1..1034)
                     /gene="purB"
                     /locus_tag="VF308_01705"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEX7435396.1"
                     /translation="MTSSTLSALSPLDGRYAAKVAALRPLLSEYGLMRRRVQVEVEWF
                     IALSEAGFAEFTALSPAARSLLRTLAQQFSEADAQAIKDIERTTNHDVKAVEYWLRGH
                     FDAHPELKAAAAFVHFACTSEDINNPSHALMLQAARTEVLLPALDGLVVKLVALAHEH
                     AAVPMLSRTHGQTASPTTVGKEIANVVARLVRARNGVAKVELLAKMNGAVGNYNAHLA
                     AYPDFDWEALARRVVEERLGLHLNAYTTQIEPHDCIAELFDALVRTHTVLIDFARDVW
                     GYVSLGYFTQRTVAGEIGSSTMPHKVNPIDFENAEGNFGIANALLAHMSEKLPISRFQ
                     RDLTDSTVLR"
     gene            complement(1031..2080)
                     /locus_tag="VF308_01710"
     CDS             complement(1031..2080)
                     /locus_tag="VF308_01710"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEX7435397.1"
                     /translation="MTEEASTVLEGVDYFDGLSAQAHRVTLRLTGRSLVISGADIERS
                     VPVRAVRWPERTRHGARSAHLAEGGSLHCADGAAWDRWVRAGGQHDSIVVRMQQSWRW
                     ALGSVCALAVLLAALYLWGIPLRARLAVVAIPASVDAALGDAALEAIDQRLMQPSTLP
                     EPAQARVRAAFERALGALAPEPVPAHRIVFRKSRIGPNAFAVPGGTMVMTDQLVELVD
                     GDEGVLVGVLAHELGHVRQRHAMRMVVQATAIGALASLVLGDFSSLLASAPALLSQAS
                     YSRDAEREADAESVRVLRAAGISPAVMVTFFEKIAQWRNADSASGGSAGSSGLGIGLR
                     ATVHPRIGCPPRLCR"
     gene            complement(2106..>2617)
                     /locus_tag="VF308_01715"
     CDS             complement(2106..>2617)
                     /locus_tag="VF308_01715"
                     /inference="COORDINATES: protein motif:HMM:NF017770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HEX7435398.1"
                     /translation="GPGSFYLVFLKTLGVGFLALMVMFGLGFVVGTAGVLGGARRANI
                     GIAIFVGIASFLIGLLAVQLLPRPYFSSRMQNLLWSRTGNRSMHFNSALRFPPLLGLT
                     LKNWLLVILTLGLYWPFAAVAMARIKLDAMSVTTRIDPQTLADQARAAEGDAAGDAAG
                     DLFGLDIGF"
BASE COUNT          421 a          876 c          943 g          377 t
ORIGIN      
        1 ttgcgcagca cggtgctgtc ggtgaggtcg cgctggaagc gcgagatcgg cagcttctcg
       61 ctcatgtgcg ccaggagcgc gttggcgatg ccgaagttgc cttcggcgtt ctcgaagtcg
      121 atcgggttga ccttgtgcgg catcgtgctg gaaccgatct cgccggcgac cgtgcgctgc
      181 gtgaaatagc ccaggctcac ataaccccag acgtcgcgcg cgaagtcgat caggacggtg
      241 tgggttcgca ccagcgcgtc gaacagttcg gcgatgcagt cgtgcggctc gatctgggtg
      301 gtgtaggcgt tcaagtgcag gcccaggcgc tcttccacga cgcggcgcgc gagcgcttcc
      361 cagtcgaaat cgggataggc cgcgagatgg gcgttgtagt tgccgaccgc gccgttcatc
      421 ttcgccagaa gttcgacctt ggcgacgccg ttgcgggccc ggacgaggcg ggcgacgacg
      481 ttcgcgattt ccttgccgac cgtggtcggg ctcgcggtct gcccgtgggt gcggctgagc
      541 atcggcacag cggcgtgctc gtgcgccagc gcgacgagct tgacgacgag gccgtcgagg
      601 gccggcagca acacttcggt gcgcgccgcc tgcagcatca gggcgtgact ggggttgttg
      661 atgtcttcgc tggtgcaggc gaaatggacg aaggccgcgg ccgccttcag ttccggatgc
      721 gcgtcgaagt ggccgcgcag ccagtactcg accgccttca cgtcatggtt ggtggtgcgc
      781 tcgatgtcct tgatcgcctg cgcatcggct tcggagaact gctgggcgag cgtgcgcagc
      841 agcgaacggg cggccggcga cagggcggtg aattcggcga agcccgcctc cgacagcgcg
      901 atgaaccatt cgacctcgac ctgcacccgg cgccgcatca ggccgtactc cgagagcagc
      961 gggcgcagtg ccgccacctt ggccgcgtag cggccgtcga ggggcgaaag cgccgagagc
     1021 gtggaagagg tcatcgacaa agacggggag gacagccgat tctagggtgg acggtggcgc
     1081 gcaacccgat gccgaggccg ctcgagccgg cgctgccgcc cgatgcggaa tcggcgttgc
     1141 gccactgcgc gatcttttcg aagaaagtca ccatcaccgc cggcgagatg ccggcggcgc
     1201 gcagcacgcg caccgactcg gcgtcggctt cgcgctcggc gtcgcgcgag tagctcgcct
     1261 ggctgagcag cgccggtgcg ctcgccagca gcgaactgaa gtcgcccagc acgaggctcg
     1321 cgagcgcgcc gatcgcggtc gcctgaacca ccattcgcat ggcgtggcgc tggcgcacgt
     1381 ggccgagctc atgggcgagc acgccgacga ggacgccttc gtcgccatcg acgagttcga
     1441 cgagctggtc ggtcatcacc atcgtgccgc cgggcaccgc gaaggcgttc ggcccgatgc
     1501 gactcttgcg gaacacgatg cggtgggcgg gcacgggctc gggcgcaagc gcgccgagcg
     1561 cgcgttcgaa cgcggcgcgc acgcgcgcct gcgccggctc gggaagggtg ctcggttgca
     1621 tcagccgctg gtcgatcgcc tcgagcgcgg catcgccgag cgccgcgtcg acgctggccg
     1681 ggatcgcgac caccgccagc cgcgccctca ggggaatgcc ccaaagatag agcgcggcca
     1741 gcagcaccgc gagcgcgcag acgctgccca gcgcccagcg ccagctctgc tgcatcctga
     1801 cgacgatcga gtcgtgctgc ccgccggcgc ggacccagcg atcccacgcg gcgccgtcgg
     1861 cgcagtggag cgagccgccc tcagcgaggt gcgcgctgcg cgctccgtgg cgcgtgcgct
     1921 ccggccaccg cacggcgcgc accgggacgc tgcgctcgat gtccgcgccc gaaatcacga
     1981 gactgcgacc ggtcaggcgc agcgtcaccc gatgggcctg cgcgctcagg ccgtcgaagt
     2041 agtcgacgcc ctcgagcact gttgacgctt cctcggtcac gccgcgtgaa cggcagcgcg
     2101 ccgcctcaga acccgatgtc gaggccgaag aggtcgcccg cggcatcgcc ggcggcatcg
     2161 ccttcggccg cgcgcgcctg gtcggccagc gtctgtggat cgatgcgggt cgtgacgctc
     2221 atcgcgtcga gcttgatgcg cgccatcgcg accgctgcga agggccagta gaggccgaga
     2281 gtgagtatca ccagcagcca gttcttcagc gtcaggccga gcagcggcgg gaagcgcagg
     2341 gcgctgttga agtgcatcga gcgattgccg gtgcgcgacc agaggaggtt ctgcatccgc
     2401 gagctgaagt aaggccgcgg caggagctgc accgcgagca ggccgatgag gaacgacgcg
     2461 atcccgacga atatcgcgat gccgatattt gcgcgcctgg ccccgccgag cacgcccgcc
     2521 gtgccgacca cgaagccgag gccgaacatc accatcaacg ccagaaagcc gaccccgagg
     2581 gtcttcagga agacgagata gaaggagccc gggcccg
//
LOCUS       DASVHM010000090         2426 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1087773, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000090 DASVHM010000000
VERSION     DASVHM010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2426
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1087773"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..567)
                     /locus_tag="VF308_01720"
     CDS             complement(<1..567)
                     /locus_tag="VF308_01720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018312481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEX7435399.1"
                     /translation="MEQPLSFLNPYGHGYARLAVAVPRIRVADPAFNAVESVAMLAEA
                     AGQGAVVVAFPELGLSAYTCDDLFHQRALLDACEAALGTLAEATRTIPVVAIVGLPLR
                     ADHRLFNCAAVVFGGRVLGVVPKTYLPNYGEFYEARQFNSGDTALAREVRLLGADVPF
                     GADLLFQAENLPLLKIAVEICEDVWVPIP"
     gene            687..1400
                     /locus_tag="VF308_01725"
     CDS             687..1400
                     /locus_tag="VF308_01725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007865944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX7435400.1"
                     /translation="MSAIPISPSGAAAPLAHSRQRRKEARPQELLDAALDLFVEKGFA
                     ATRSEEVAMRAGVSKGTLYLYYPSKEDLLKEVVRHNVVNQIAEGADLIRQFEGSTSEL
                     LAVVLRLWWERVGETRASGILKLMMSEARNFPEIAQFYVDEVIRPSHAMLSALVQRGI
                     DRGEFRQVIVTDVVHALVTPLLFLVMNKHSLGACSVGSMPEPKSVIEAQIDLVLHGLR
                     APVRPSRPPLARKKAGRSR"
     gene            1397..>2426
                     /locus_tag="VF308_01730"
     CDS             1397..>2426
                     /locus_tag="VF308_01730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX7435401.1"
                     /translation="MKRWLKWLLPLIAIGVVAAFVGRAIQARKAEQAQATTVQPATGL
                     DLAASDVVVARTLDLPRTLDVSGGLKAVSSAIVKAKVAAEVKQLTVREGDAVKAGQVL
                     GQLDTAELDWKLRQAEQTASSTRSQLEIAQRALVNNKALVAQGFISPTALETSISTEA
                     GAEATLGSALAAVELARKARSDAVLTAPIGGLVSQRLVQPGERVAVDAKLIEIVDLSR
                     LELEAAIAPEDVVALQVGSAATLQIDGFAAPILGRVARINPSAQAGTRSIMVYLEVAG
                     QPALRQGLFAKGTIELGRKKALALPLSAVRVDQAQPYVLQVQGGKALATPVRLGSRGV
                     VEGEAWVEI"
BASE COUNT          402 a          834 c          844 g          346 t
ORIGIN      
        1 cgggatcggc acccagacgt cttcgcagat ctcgacggcg atcttcagca gcggcaggtt
       61 ctcggcctga aacagcaggt cggcgccgaa cggcacgtcg gcaccgagca ggcggacttc
      121 gcgcgcgagc gccgtgtcgc ccgagttgaa ctggcgcgcc tcgtagaact cgccgtagtt
      181 gggcaggtag gtcttgggca cgacgccgag cacgcggccg ccgaagacga ccgcggcgca
      241 gttgaagagt cggtggtcgg cgcgcagcgg caggccgacg atggcgacga cggggatcgt
      301 gcgcgtcgct tcggccagcg tgccgagggc ggcctcgcac gcatcgagca gggcgcgctg
      361 atggaacaga tcgtcgcagg tataggccga gaggccgagc tcggggaacg cgaccaccac
      421 ggcgccctgc ccggccgcct cggccagcat cgcgaccgac tcgacggcat tgaaggccgg
      481 atcggcgaca cggatgcgcg gaaccgcgac ggcgagccgg gcatagccat ggccgtaggg
      541 gttcagaaac gatagcggct gctccaccga gacctccttg tcagcgaaac atcatggcat
      601 gggatcagcc cgcgctgctg cgccggcgcg ccttgacccg cgggacctcg aacggctata
      661 ttactgacca acgagtcagt accccgatgt ccgccattcc gatcagcccg tccggcgccg
      721 cagcgcctct cgcccacagc cggcaacggc gcaaggaggc gcgcccgcag gagctcctcg
      781 atgccgcgct cgatcttttc gtggagaagg gtttcgcggc cacccgttcc gaagaagtgg
      841 cgatgcgcgc cggcgtctcg aagggcacct tgtacctcta ctacccgagc aaggaagacc
      901 tgctcaagga agtcgtgcga cacaacgtcg tcaaccagat cgccgagggc gccgacctga
      961 tccgccagtt cgaaggcagc acctcggaat tgctcgccgt ggtgctgcgc ctctggtggg
     1021 aacgggtcgg cgagacccgg gcttcgggca tcctcaagct gatgatgtcg gaggcgcgca
     1081 acttccccga gatcgcccag ttctacgtcg acgaggtcat cagaccgtcg cacgccatgc
     1141 tctccgcact ggtccagcgc ggcatcgacc gcggcgagtt tcgccaggtc atcgtcaccg
     1201 acgtcgttca tgcgctggtg acgccgctgc tcttcctggt gatgaacaag cactcgctcg
     1261 gtgcctgctc ggtcggcagc atgccggagc cgaagtcggt gatcgaagcg cagatcgacc
     1321 tcgtgttgca tgggctgcgt gcgcccgtcc gcccgagccg gccacccctc gccaggaaga
     1381 aggcgggacg ctcgcgatga aacgctggct gaaatggctg ctgccgctga tcgcgatcgg
     1441 cgtcgtggcg gcatttgtcg gccgcgcgat ccaggcccga aaggccgagc aggcccaggc
     1501 cacgacggtg cagccggcga cggggctcga tctcgcggcg tcggatgtcg tagtcgcgcg
     1561 cacgctcgat ctgccgcgca cgctcgacgt ctcgggtggg ctgaaggcgg tcagcagcgc
     1621 aatcgtgaag gccaaggtcg cggccgaggt caagcagctc acggtgcgcg aaggcgacgc
     1681 cgtgaaggcc ggccaggttc tgggccagct cgacaccgcc gagctcgact ggaagctgcg
     1741 ccaggccgag caaactgcct cctcgacgcg ctcgcagctc gagatcgcgc agcgcgcact
     1801 cgtcaacaac aaggcgctgg tggcccaggg cttcatctcc ccgacggcgc tggagacgtc
     1861 gatctccacg gaggccggcg ccgaagccac gctcggctcg gcgctcgccg ccgtggaact
     1921 cgcccgcaag gcgcgcagcg acgcggtcct gaccgcgccg atcggcggcc tcgtgtcgca
     1981 gcgcctggtg cagccgggcg aacgcgtcgc ggtcgacgcg aagctgatcg agatcgtcga
     2041 tctgtcgcgc ctcgaactcg aagcggcgat cgcgccggaa gacgtcgtcg cactccaggt
     2101 cggcagcgcc gcgaccctgc agatcgacgg cttcgcggcc ccgatcctcg ggcgcgtggc
     2161 gcgcatcaac ccgagcgccc aggccggcac acgctcgatc atggtctacc tcgaagtcgc
     2221 cgggcagccc gcgctgcgcc agggcctttt cgccaagggc acgatcgagc tcggccgcaa
     2281 gaaggcgctc gccctgccgc tttcggcggt gcgcgtcgac caggcccagc cctacgtgct
     2341 gcaggtgcag ggcggcaagg cgctggccac gccggtgcgc ctcggatcgc gcggcgtggt
     2401 cgagggtgaa gcctgggtcg agatcg
//
LOCUS       DASVHM010000091         5274 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1376486, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000091 DASVHM010000000
VERSION     DASVHM010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5274
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1376486"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(53..862)
                     /gene="hpaI"
                     /locus_tag="VF308_01735"
     CDS             complement(53..862)
                     /gene="hpaI"
                     /locus_tag="VF308_01735"
                     /EC_number="4.1.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019719289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018802 -
                     2,4-dihydroxyhept-2-ene-1,7-dioate aldolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-2-oxoheptanedioate aldolase"
                     /protein_id="HEX7435402.1"
                     /translation="MAALENTFKQALPAGRPRIGLWLGLADPYSAELLAGAGFDWLLI
                     DCEHAPNDLRRVLAALQAIDSARGHATAAAGSPHPIVRPAVGDVALIKQLLEVGAQTL
                     LVPMVETAEQAALLAAAMRYPPRGIRGVGSAMARSSRWSSVENYLHVADEQMCLLVQA
                     ESVTAMGNLEAIAAVDGVDGVFFGPADLSASMGLLGQPEHPRVKAAIEDGIRRVRAAG
                     KAPGVLAMNPALARHYLEVGALFVAVGVDAALLVRAAKDLAAAFKGGGSAE"
     gene            1092..2534
                     /locus_tag="VF308_01740"
     CDS             1092..2534
                     /locus_tag="VF308_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEX7435403.1"
                     /translation="MGVKLKVVGWLAIGAVAGALTTMQLQATARNSVAQLPLEELQQL
                     AAVFGMVKSDYVEPGDEKKLISDAIGGMVAGLDPHSQYFDKKSFKEFREATTGRFVGI
                     GIEMGMEDGLVKVVSPIEGSPAFRAGLKSGDLITKIDDTLVKGLTVDQAVKRMRGEPN
                     TKVLLTVFRKSESRAFPITIVREEIKLQSVRAKMVEPGYGWLRVSQFQDRTVDDFAKK
                     LDELYKQDPNLKGLVLDLRNDPGGLLEGAVAISAAFLPNDAVVVTTNGQIADSKATFK
                     AAPEFYQRRGGSDPLKRLPDAVKRVPLIVLVNEGSASASEIVAGALQDHHRGTIMGAQ
                     TFGKGSVQTVRQLSPETALKITTARYYTPSGASIQAKGIVPDVMLDETAEGNLFAALR
                     VREADLEKHLQSGQGAEQKDAAREKAREDARKKLEDDAAKKAAAPKPPPEFGSAEDFQ
                     LAQALNRLKGKTVVASKTLVERKAETDTTN"
     gene            2626..3408
                     /locus_tag="VF308_01745"
     CDS             2626..3408
                     /locus_tag="VF308_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HesA/MoeB/ThiF family protein"
                     /protein_id="HEX7435404.1"
                     /translation="MNDAQLLRYSRHILLDELGVEGQMRLLGAHALVIGAGGLGSPVA
                     LFLGSAGVGTITIVDDDIVDLTNLQRQIAHNLERVGEPKAQSAARTIAAINPEVRVVA
                     LRERADAARLDALVTAADVVVDCSDNFATRQAVNAACVAHAKPLVSGAAIGFDGQISV
                     YDVRDRAGPGTNPCYACVFAPDAGFEEARCATMGVFAPLVGIIGSMQAAEALKLLAGA
                     GSSLAGRLQMLDARSMEWTEIRTSRNADCPVCGARASLHALS"
     gene            complement(3393..4568)
                     /locus_tag="VF308_01750"
     CDS             complement(3393..4568)
                     /locus_tag="VF308_01750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015866595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEX7435405.1"
                     /translation="MSAISKDTTFLGYRRENGRVGVRNHVIVLPLDDLSNAAAEAVAH
                     NTKGALAIPHPYGRLQFGADLDLHFRTLIGAGCNPNVAAVVVIGIEDSWTKKVVDGIA
                     TTGKPVVGFGIEGHGDHDTILRASKAAREYVQRASETQREPCPIAELWVSTKCGESDT
                     TSGCGANPTVGNAFDKLHPLGNTLCFGETTELTGGEQIVAARCANEAVRAKFMFMFDR
                     YQEVINRHKTSDLSDSQPTKGNIAGGLTTIEEKALGNIQKIGKTCTVDGVIDKAEVPT
                     HPGLWFMDSSSAAAEMVTLCAASGYAVHLFPTGQGNVIGNPILPVIKICANPRTVRLM
                     GEHIDVDTSGLLQREITLDQAGDRLLDCMLRTANGRLTAAEALGHREFVLTRLYESA"
     gene            complement(4584..4865)
                     /locus_tag="VF308_01755"
     CDS             complement(4584..4865)
                     /locus_tag="VF308_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008159569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEX7435406.1"
                     /translation="MIHFVLHDARDSVAVVVVEGVKAGMALTGWIMDEDQTLNLEARQ
                     DIPIGHKVALKDMQPGDTVLKYGIDMGKVTAPIKAGEHAHVHNIKTKRW"
     gene            4969..>5274
                     /locus_tag="VF308_01760"
     CDS             4969..>5274
                     /locus_tag="VF308_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013106431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEX7435407.1"
                     /translation="MEKHSELTAPNFPTAKEDAEAVTPPSRYEGPESSYRLAFTDTEF
                     LLREELRPVRMQLELLKPEMVQREQGVESTIVIFGSARILPPETAAQRLALARKGGDA
                     "
BASE COUNT          857 a         1809 c         1795 g          813 t
ORIGIN      
        1 cgccgggcgt gctggcgatg aacccggcgc tggcgcgaat gcccgttgcg gactactcgg
       61 cgctcccgcc gcccttgaac gcagcggcga gatccttcgc cgcacgcacc aggagcgccg
      121 catcgacgcc gacggcgaca aagagcgcac cgacctcgag gtagtgccgc gccagcgccg
      181 ggttcatcgc cagcacgccc ggcgccttgc cggctgcgcg aacgcggcgg atgccgtcct
      241 cgatggcggc cttcacgcgc gggtgctcgg gctggccgag cagacccatc gaggccgaca
      301 ggtcagcggg cccgaagaac acgccgtcga ccccgtcgac cgcggcgatc gcctcgagat
      361 tgcccatcgc ggtgacgctt tcggcttgga ccagcaggca catctgctcg tcagccacgt
      421 ggaggtagtt ctcgaccgaa ctccagcgcg acgagcgcgc catcgcgctg cccacgccgc
      481 ggatgccgcg cggcggatag cgcatcgccg ccgccagcag cgctgcctgc tcggccgtct
      541 cgaccatggg caccagcagc gtctgcgcgc cgacttcgag gagctgcttg atcagcgcca
      601 cgtcgccgac ggccggccgc acgatcggat gcggcgaccc ggccgcggcg gtggcatggc
      661 ctctcgcgct gtcgatggcc tgcagcgccg cgagcacgcg gcgcaggtcg ttcggcgcgt
      721 gttcgcagtc gatcagcaac cagtcgaacc cggcgccggc gagcaactcc gcgctgtagg
      781 gatcggccag gccgagccag aggccgatcc ggggacgccc ggcaggcagg gcctgcttga
      841 aggtgttttc gagagctgcc attgcgaagc cgaattgcga ttgcgaagga agatcagccg
      901 accattttgc agccaggcgc ctcggggccg gtcgtgccga gcgcctacgc ctgcaaaaca
      961 gcacgaagac actgcaactt tccaggctcc tcatccctcc aagcaggggt gagggaatat
     1021 actgacgagc aggtgtgtct ggatttcatg tagccgattc gagtctcggc cggtcgaaga
     1081 aggggtcgtt catgggtgtg aaactcaagg tcgtgggttg gctcgccatc ggtgccgtcg
     1141 ccggtgcgct cacgacgatg caattgcagg cgaccgcgcg caattcggtc gcgcaactcc
     1201 cgctcgaaga gttgcagcag ctcgccgcgg tcttcggcat ggtcaagagc gactatgtcg
     1261 agccgggcga cgagaagaag ctgatcagcg acgcgatcgg cggcatggtc gccgggctcg
     1321 atccgcactc gcagtacttc gacaagaagt cgttcaagga attccgcgag gcgaccaccg
     1381 gccgtttcgt cggcatcggc atcgagatgg gcatggaaga cggcctggtc aaggtcgtga
     1441 gtccgatcga gggttcgccg gcctttcgcg ccggcctgaa aagcggcgac ctgatcacca
     1501 agatcgacga cacgctggtc aagggcctga ccgtcgacca ggccgtcaag cgcatgcgcg
     1561 gcgagccgaa caccaaggtg ctgctgacgg tgttcaggaa gagcgagagc cgcgccttcc
     1621 cgatcacgat cgtgcgcgag gagatcaagc tccagagcgt gcgcgcgaag atggtcgagc
     1681 ccggctacgg ctggctgcgc gtgagccagt tccaggatcg cacggtcgac gatttcgcga
     1741 agaagctcga cgagctctac aagcaggatc cgaacctgaa aggcctggtg ctcgacctgc
     1801 gcaacgatcc gggcggcctg ctcgaaggcg ccgtcgcgat ctcggccgcc ttcctgccga
     1861 acgatgcggt cgtcgtcacg acgaacggcc agatcgccga ctcgaaggcc acgttcaagg
     1921 ccgcgcccga gttctatcag cgccgcggcg gctccgaccc gctgaaaagg ctgcccgacg
     1981 cggtcaagcg cgtgccgctg atcgtcctcg tcaacgaagg ttcggcctcg gccagcgaga
     2041 tcgtcgccgg cgccctgcag gaccaccacc gcggcacgat catgggcgcg cagaccttcg
     2101 gcaagggctc ggtccagacg gtgcgccagc tctcgcccga gacggcgctc aagatcacga
     2161 ccgcgcgcta ctacacgccg agcggcgcgt cgatccaggc caagggcatc gttcccgacg
     2221 tcatgctcga cgaaaccgcc gaaggcaact tgttcgcggc gctgcgcgtg cgcgaggccg
     2281 atctcgagaa gcacctgcag agcggccagg gcgccgaaca gaaagacgcg gcgcgcgaaa
     2341 aggcgcgcga ggacgcgcgc aagaagctcg aggacgacgc cgccaagaag gcagccgcgc
     2401 cgaagccccc gccggaattc ggcagcgccg aagatttcca gctcgcccag gcgctcaacc
     2461 gcctgaaggg taagaccgtg gtggccagca agacgctggt cgagcgcaag gccgagaccg
     2521 acacgaccaa ctgaccgccc ggcgcactcc ccgaccgacg cccgtgcccg ccacgggcgt
     2581 ccttgtttgt atgctcccgc gatgaacgac gccgacgacg ccggcatgaa cgatgcgcaa
     2641 ctcctgcgct attcgcgcca catcctgctc gacgagctcg gcgtcgaagg gcagatgcgg
     2701 ctgctcggcg cgcacgcact ggtgatcggc gcgggcggac tcggctcgcc ggtcgcgctc
     2761 ttcctcggca gcgccggcgt cggcacgatc acgatcgtcg acgacgacat cgtcgacctc
     2821 accaacctgc agcgccagat cgcccacaac ctggagcgtg tcggcgagcc gaaggcacag
     2881 tcggcggcgc ggacgatcgc ggcgatcaac cccgaggtgc gcgtcgtcgc cctgcgggag
     2941 cgcgccgacg cggcgcgcct cgacgcgctg gtcacggccg ccgacgtggt ggtcgactgc
     3001 agcgacaact tcgcgacccg gcaggccgtg aacgccgcct gcgtggcgca cgccaagccg
     3061 ctcgtctccg gcgcggcgat cggcttcgac ggccagatct cggtctacga cgtccgcgat
     3121 cgcgccgggc ccggcacgaa cccgtgctac gcctgcgtgt tcgcgcccga cgccggcttc
     3181 gaggaagcgc gctgcgcgac gatgggcgtc ttcgcgccgc tggtgggcat catcggcagc
     3241 atgcaggccg ccgaagcgct gaagctgctg gccggcgccg gttcgtcgct cgccgggcgc
     3301 ctgcagatgc tcgatgcgcg gagcatggaa tggaccgaga tccgcacctc gcgcaacgcc
     3361 gattgcccgg tgtgcggtgc acgggcttca cttcacgcgc tctcgtagag ccgcgtcagc
     3421 acgaactcgc ggtgccccag cgcctcggcc gcggtgagcc ggccgttggc ggtgcgcagc
     3481 atgcagtcga gcagccggtc gccggcctgg tcgagcgtga tctcgcgctg cagcagcccc
     3541 gacgtgtcga cgtcgatgtg ctcgcccatc aggcgcacgg tgcgcggatt ggcgcagatc
     3601 ttgatgaccg gcaggatcgg gttgccgatc acgttgccct gcccggtcgg gaagagatgc
     3661 accgcgtagc ccgaggccgc gcacaaggtc accatctcgg ccgccgcgct cgacgaatcc
     3721 atgaaccaca ggcccggatg cgtcggcact tcggccttgt cgatcacgcc gtcgaccgtg
     3781 caggtcttgc cgatcttctg gatgttgccg agcgccttct cctcgatcgt cgtcaggccg
     3841 ccggcgatgt ttcccttggt cggctgcgag tcggaaaggt cgctcgtctt gtggcggttg
     3901 atgacctcct ggtagcggtc gaacatgaac atgaacttcg cgcgcaccgc ctcattggcg
     3961 cagcgcgcgg cgacgatctg ctcgccgccg gtgagctcgg tggtctcgcc gaagcacagg
     4021 gtgttgccga gcgggtgcag cttgtcgaag gcgttgccga cggtcgggtt cgcgccgcag
     4081 ccactggtcg tgtccgactc gccgcatttg gtcgagaccc agagttccgc gatcgggcag
     4141 ggctcgcgct gcgtctcgct cgcccgctgc acgtattcgc gcgccgcctt cgaggcccgc
     4201 aggatcgtgt cgtggtcgcc gtggccttcg atgccgaagc cgacgacggg cttgccggtg
     4261 gtcgcgatgc cgtcgaccac cttcttcgtc cagctgtcct cgatgccgat gacgacgacc
     4321 gcggcgacgt tcggattgca gccggcgccg atcagggtgc ggaaatgcag gtcgaggtcg
     4381 gcgccgaact gaagccgccc gtacggatgc gggatcgcca gcgcgccctt ggtgttgtgg
     4441 gcaacggcct cggcggctgc gttcgacagg tcgtcgagcg gcagcacgat gacgtggttg
     4501 cgcacgccga cgcggccgtt ctcgcgccgg tagccgagga aggtggtgtc tttcgagatc
     4561 gcggacatgc ccggttcctt ggcttaccag cgcttggtct tgatgttgtg cacgtgcgcg
     4621 tgctcgcccg ccttgatcgg cgcggtgacc ttgcccatgt cgatgccgta cttgagcacg
     4681 gtgtcgcccg gctgcatgtc cttcagcgcg accttgtggc cgatcggaat gtcctgtcgg
     4741 gcctcgaggt tcagggtctg gtcttcgtcc atgatccagc cggtcagcgc catcccggcc
     4801 ttcacacctt cgaccacgac aacggcgacg ctgtcgcggg cgtcgtgcaa cacgaaatgg
     4861 atcatccggg cggctcccac cgtggctcga gaaggctgcg atcttagggc ttcggccgcg
     4921 cgccgcgcgc cgacccgggc cttgcccgtt gccttaagct gcgggtctat ggaaaagcac
     4981 agcgagctga ccgctccgaa cttcccgacc gccaaggaag acgccgaggc cgtcacgcca
     5041 ccgtcgcgct acgaaggccc cgaaagctcg taccggctcg ccttcaccga caccgagttc
     5101 ctgctgcgcg aagagctccg cccggtgcgc atgcagctcg agctgctcaa gcccgagatg
     5161 gtgcaacggg agcagggcgt cgagtcgacg atcgtgatct tcggcagcgc ccggatcctg
     5221 ccgccggaaa cggcagcgca gcggctggcg ctggcccgca agggcggcga cgcc
//
LOCUS       DASVHM010000092         2370 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1305037, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000092 DASVHM010000000
VERSION     DASVHM010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1305037"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..712
                     /locus_tag="VF308_01765"
     CDS             <1..712
                     /locus_tag="VF308_01765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEX7435408.1"
                     /translation="EFSTSLGPVFTHLLLADEINRAPAKVQSALLEVMQERQVTIAGV
                     THKVPEPFLVMATQNPIETEGTYPLPEAQVDRFMMKVVVDYPSEEEEFVIAQRVTGVM
                     ANVSAVASMGQLAELQHECRQVYVDPSLIQYAVKLVSATRRPERYDLPDIAKYLTFGA
                     SPRATIGLIEGARALAFMRGRGYALPEDMTGLVGDVMRHRLVLSYEALAEGLNADAII
                     ERVVKKIPVPDKPLATHA"
     gene            724..1713
                     /locus_tag="VF308_01770"
     CDS             724..1713
                     /locus_tag="VF308_01770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEX7435409.1"
                     /translation="MGTPTATAPGAAGAHGAEALLKRLEWTVIRRLDGILQGDYRTLW
                     RGAGLDLADLREYQHHDDVRHIDWNVTARLQQPYVRQFTEDREMSAWFLVDLSASVDF
                     GSDIMTKRSVAREFVGVLARLLTRHGNRVGALLYGTEVDTVIPARGGRLHVLHLLQRM
                     AARPAEAGPGSTHLRDLLQAGQRIVKRRSSLFVVSDFISVPGWEVALGQLAERHEVTA
                     VRLFDPLEMELPDLGLLTMRDAETGEQIVVDTHDRGFRKRFAAAADRREAGLREALAK
                     AGVDTLELATDDDLQSAILRFADLRKQRSRLANWSGKTSAMPAHISSLKASAA"
     gene            1728..>2370
                     /locus_tag="VF308_01775"
     CDS             1728..>2370
                     /locus_tag="VF308_01775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007837419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEX7435410.1"
                     /translation="MNFLWPEMLWGLVAIPILVLFYVWLLRRRKKTALRYASLSLVKE
                     ALGARSAWRRHVPPALLLVALTALLLATARPAAVVTLPTQSQTIVLAMDVSGSMRATD
                     VQPNRLVASQEAAKAFVAELPRSVRVAVVAFAGSAAVVQAPTLSREDIYASIDRFQLQ
                     RATAIGSGIVLSLATIFPEAGIDLSQITGQRNMPPAPGEKPRQPFTPVAPGSYT"
BASE COUNT          383 a          862 c          773 g          352 t
ORIGIN      
        1 cgaattcagc acctcgctcg gaccggtctt cacgcacctg ctgctggccg acgagatcaa
       61 ccgggcaccc gccaaggtgc agagtgcgtt gctcgaggtg atgcaggagc gccaggtcac
      121 gatcgcgggc gttacccaca aggtgcccga gcccttcctc gtgatggcga cgcagaaccc
      181 gatcgagacc gaaggcacct atccgctgcc cgaggcccag gtcgaccgct tcatgatgaa
      241 ggtggtggtc gactacccga gcgaggaaga ggagttcgtg atcgcgcagc gcgtgaccgg
      301 tgtgatggcg aacgtctcgg ccgtggccag catgggccag ctcgccgaac tgcagcacga
      361 atgccgccag gtctacgtcg acccgtcgct gatccagtac gcggtcaagc tggtcagcgc
      421 gacgcgccgg cccgagcgct acgacctgcc cgacatcgcg aaatacctga ccttcggcgc
      481 cagtccgcgc gccacgatcg gtctgatcga aggggcgcgg gcgctcgcct tcatgcgcgg
      541 ccgcggctat gccctgcccg aagacatgac cggcctcgtc ggcgacgtga tgcggcaccg
      601 cctggtgttg tcgtacgagg cgctcgccga agggctgaac gccgacgcga tcatcgagcg
      661 cgtggtcaag aagattccgg tcccggacaa gcctctggcg acgcacgcgt gaacgagaag
      721 tcgatcggga ccccgaccgc gacggcgccc ggcgcggcgg gtgcgcacgg cgcggaggcg
      781 ctgctcaagc gcctcgaatg gaccgtgatt cgccgcctcg acggcatcct gcaaggcgac
      841 taccgcacgc tctggcgcgg cgccggactc gatctcgccg acctgcgcga gtaccagcac
      901 catgacgacg tgcgccacat cgactggaac gtcacggcac gcctgcagca accctacgtg
      961 cgccagttca cggaagaccg cgagatgagc gcctggttcc tcgtcgacct cagcgccagt
     1021 gtcgacttcg gctccgacat catgaccaag cgcagcgtcg cgcgcgaatt cgtcggcgtg
     1081 ctcgcgcgcc ttctgacgcg gcacggcaac cgggtcggcg ccctgctcta cggcaccgag
     1141 gtcgacacgg tgattccagc gcgcggcgga cgtctccacg tgctgcacct gttgcagcgc
     1201 atggcggcgc gtccggccga ggccggcccc ggatcgaccc acctgcgcga cctgttgcag
     1261 gccggccagc gcatcgtcaa gcgccgcagc agcctcttcg tggtctcgga cttcatcagc
     1321 gtgccgggct gggaggtggc gctcggccaa ctcgccgaac gccacgaggt gacggcggtg
     1381 cgcctcttcg acccgctcga gatggaactt cccgacctcg gcctgctgac gatgcgcgac
     1441 gccgagaccg gcgaacagat cgtcgtcgac acccacgatc gtggctttcg caagcgtttt
     1501 gccgccgccg ccgaccggcg cgaagcaggt ctgcgcgaag ccctcgccaa ggccggcgtc
     1561 gacaccctcg aactcgccac cgacgacgat ctgcagagcg cgatcctgcg cttcgccgac
     1621 ctgcgcaaac aacgcagccg gctcgccaac tggagcggca agacgagcgc gatgccggcc
     1681 cacatttcat cgttgaaggc gagtgccgca tgacgcccgc gcccttcatc aacttcctct
     1741 ggcccgagat gctgtggggg ctggtcgcga tcccgatact ggtgctgttt tacgtctggc
     1801 tgctgcggcg gcgcaagaag acggcgctgc gctacgcctc gctcagcctc gtcaaggaag
     1861 cgctcggcgc gcgcagtgcc tggcgccgtc acgtgccgcc ggcgctgcta ctggtcgcgc
     1921 tgaccgcgct gctgctcgcg acggcccggc cggccgccgt cgtcaccctg ccaacgcaat
     1981 cgcagaccat cgtgctggcg atggacgtgt cgggcagcat gcgggccacc gacgtgcaac
     2041 cgaatcggct cgtcgcctcg caggaggcgg ccaaggcctt cgtcgccgaa ctgccgcgca
     2101 gcgttcgcgt cgcggtcgtc gccttcgccg gcagcgcggc ggtggtgcag gcgccgaccc
     2161 tgagccgcga agacatctac gcctcgatcg atcgtttcca gctgcagcgc gcgaccgcca
     2221 tcggcagcgg catcgtgctc tcgctcgcca ccatcttccc cgaggccggc atcgacctct
     2281 cgcagatcac cggccagcgc aacatgccgc ccgcgcccgg cgaaaagccg cgccagccgt
     2341 tcacgccggt cgcaccgggc tcgtacacct
//
LOCUS       DASVHM010000093         3473 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_944931, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000093 DASVHM010000000
VERSION     DASVHM010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3473
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_944931"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..268)
                     /locus_tag="VF308_01780"
     CDS             complement(<1..268)
                     /locus_tag="VF308_01780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003263772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7435411.1"
                     /translation="MNPTRRSFDLSGRVALVTGGGSGLGLAIAQGLAEAGAMVVLNGR
                     TAAKLEAAAAGFRSQGLRAETAVFDVADSAQVNRGVAALLARVEA"
     gene            complement(265..1233)
                     /locus_tag="VF308_01785"
     CDS             complement(265..1233)
                     /locus_tag="VF308_01785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019431091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HEX7435412.1"
                     /translation="MPPDQTPRDPAPPEVLVVAKLWPPMMESLHGAFRVHDRIHETDP
                     AAFAAAAPRIRAIAASGESKVTRKLIAQLPVLEIISVFGVGYDGIDVAAARERGVQVT
                     HTPNVLNDEVADLAIGLVLAVARRIPQADRYVREGRWRSGPAVLARKVSGSRLGIVGL
                     GRIGTAIARRAEAFGMSIAYTARSRKADVGFRYFPSAETLAAEVDFLVVITPGGAATR
                     KLIDAKVLAALGPQGYLVNVARGSVVDEAALVKALQDGTIAGAGLDVFEDEPNVPAAL
                     CALDNVVLTPHIGSATWQTRRAMADLAFGNLQAHFAGKALLSPVPQ"
     gene            1315..2076
                     /locus_tag="VF308_01790"
     CDS             1315..2076
                     /locus_tag="VF308_01790"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008111903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEX7435413.1"
                     /translation="MDDLKGKVVLITGASTGIGAAAARAFGAQGARVAVHYKASRNAA
                     ERVAEDIRKAGAESALVAGDVTKPGAAKDIVDKVVARFGRLDVLVNNAGGLVKRTPIV
                     EYTDEFVDAVLALNVKQVVAFVREGAIAMRRQGGGNIINVSSIAARHGGGPGSVIYAA
                     TKGFVSTATRGWAKELVGDGIRVNAISPGVIRTPFHERFSTPELLKSMQATIPMNRLG
                     EPDECSGAFLFLASDTMSGYVTGQIIEINGGQLMP"
     gene            complement(2098..>3473)
                     /locus_tag="VF308_01795"
     CDS             complement(2098..>3473)
                     /locus_tag="VF308_01795"
                     /EC_number="1.5.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011515934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004174 -
                     electron-transferring-flavoprotein dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HEX7435414.1"
                     /translation="KATPHFLLPDCFKNDGNYIVSLGNVVRWMAQQAEGLGVEVFPGF
                     PAAEVLYDEDGSVKGVATGNLGIGKDSKPTGNFQLGMELHAKYTIFAEGSRGSLGKHL
                     IARFKLDEGRDPQTYGIGLKELWEIDPAKHEPGLVLHTAGWPLDPAIYGGSFLYHLDN
                     HQVELGFVIGLDYANPWLSPFEEMQRWKTHPEIRKFLEGGKRVGYGARAITAGGILSL
                     PKTVFKGGALVGCEAGHLNSSRIKGSHAAIKTGMLAADAAFDAIKSGRRHDELSAYSQ
                     AFAKSWLHEELDQSRNFKQWFKKGRTVATLMTGIEQWLLPKLGFKAPPWTLHNVQPDH
                     VYLKPAAECAQIAYPKPDGRITFDRLSSVFISNTNHAEDQPAHLTLKDPSVPVQVNLA
                     RYGGPESRYCPAGVYEFVKNPDDSDRLQINAQNCVHCKTCDIKDPTQNIIWVTPEGGG
                     GPNYSGM"
BASE COUNT          549 a         1130 c         1207 g          587 t
ORIGIN      
        1 tcgcctcgac gcgcgccagt agcgccgcga cgccgcgatt cacctgggcc gaatcggcga
       61 catcgaagac cgcggtctcg gcccgcaggc cctggcttcg aaagccggcg gcagccgctt
      121 cgagcttggc cgcggtgcgg ccattcagca cgaccatggc gcccgcttcg gccagtccct
      181 gcgcgatggc gagcccgagg ccggagccgc cgcccgtcac gagcgcgacg cgaccggaga
      241 ggtcgaacga tcggcgggtc gggttcattg cggcaccggc gaaaggagcg ccttgccggc
      301 gaaatgggcc tgcaggttgc caaacgccag gtcggccatc gcgcgccgcg tctgccaagt
      361 cgcgctgccg atgtgcggtg tcagcaccac gttgtcgagg gcgcagagcg cggccggaac
      421 attcggctcg tcctcgaaga cgtcgagccc ggcgcccgcg atcgtgccgt cctgcaaggc
      481 cttgacgagt gccgcttcgt cgaccaccga tccgcgcgcg acgttgacga gatagccctg
      541 cggcccgagc gcggccagca ccttggcgtc gatgagcttg cgcgtggccg cgccgcccgg
      601 cgtgatgacg acgaggaaat cgacttcggc ggcgagtgtt tcggcgctcg gaaagtagcg
      661 gaacccgaca tccgccttgc gactgcgggc ggtgtaggcg atcgacatgc cgaaggcctc
      721 ggcgcgccgc gcgatcgctg tgccgatgcg accgagtccg acgatgccga gccgcgatcc
      781 gctgaccttg cgcgccagca cggcgggccc cgatcgccat cggccttcgc gcacgtagcg
      841 gtcggcctgc gggatgcgcc gcgcgacggc gaggacgagg ccgatcgcga ggtcggccac
      901 ttcgtcgttc agcacgttcg gcgtgtgcgt gacctggacg ccgcgttcgc gcgccgcggc
      961 cacgtcgatg ccgtcatagc cgacgccgaa gaccgagatg atctcgagca cgggcaactg
     1021 cgcgatcagc ttgcgcgtca ccttcgactc gccgctcgcc gcgatcgcgc ggatgcgggg
     1081 cgccgccgcg gcgaatgccg ccgggtcggt ctcgtggatc cggtcgtgga cgcggaacgc
     1141 cccgtgcagc gattccatca tcggcggcca cagcttggcg accacgagca cttcgggcgg
     1201 cgcggggtcg cgaggggtct gatcaggggg catggcgggc aatttgtctg gcgagtgggc
     1261 gcattgtcgc cgttcatcga tactccgaaa tccgcaaccg gaggagacga aatgatcgac
     1321 gatctaaagg gcaaggtggt cctgatcacc ggtgccagca ccggcatcgg cgccgccgcg
     1381 gcacgggcct tcggggcgca gggcgcgcgc gtggcggtgc actacaaagc gagccggaac
     1441 gccgcggaaa gggttgccga agacatccgc aaggccggcg ccgaaagcgc gctggtcgcc
     1501 ggcgacgtga cgaagccggg cgcggcgaag gacatcgtcg acaaggtcgt cgcgagattc
     1561 ggccgcctcg acgtgctcgt caacaacgcc ggcggcctgg tcaagcggac tccgatcgtc
     1621 gagtacaccg acgagttcgt cgacgccgtg ctcgcgctca acgtcaagca ggtggtcgcg
     1681 ttcgtccgcg aaggggcgat cgcgatgcgc cgccaaggtg gcggcaacat catcaacgtc
     1741 agttcgatcg cggcgcgcca tggcgggggc ccgggctcgg tgatctacgc ggcgaccaag
     1801 ggcttcgtct cgaccgcgac tcggggctgg gccaaggagc tggtcggcga cgggattcgc
     1861 gtcaatgcga tttcgccggg cgtcatcagg acgccgttcc acgaacgctt ctcgaccccc
     1921 gagctgctga aatcgatgca ggcgacgatc ccgatgaacc ggctcggcga accggacgaa
     1981 tgcagcggcg cattcctctt cctcgcttcg gacacgatga gcggctacgt caccggccag
     2041 atcatcgaaa tcaacggcgg gcagctcatg ccctgatcgc ctcggcggcg cgacgaccta
     2101 catgccgctg taattcggcc cgccgccgcc ttcgggcgtg acccagatga tgttctgggt
     2161 cgggtccttg atgtcgcagg tcttgcagtg cacgcagttc tgcgcgttga tctgcaggcg
     2221 gtcggagtcg tcggggttct tcacgaactc gtacacgccg gcagggcagt agcggctttc
     2281 cggaccgcca tagcgggcga ggttgacctg gaccggaacg ctcggatcct tcaaggtcag
     2341 gtgcgcgggc tgatcctcgg cgtggttggt gttgctgatg aagacgctgc tcaggcgatc
     2401 gaaggtgatc ctgccatccg gcttcgggta cgcgatctgc gcgcattcgg ctgcgggttt
     2461 caggtagaca tggtccggct gcacgttgtg cagcgtccac ggcggtgcct tgaagccgag
     2521 cttcggcagc agccactgtt cgatgccggt catcagcgtg gccacggtcc ggcccttctt
     2581 gaaccactgc ttgaagttgc gcgactggtc gagctcttca tgcagccagc ttttcgcgaa
     2641 cgcttgcgaa taggcgctga gctcgtcgtg ccggcggccg ctcttgatcg catcgaaggc
     2701 cgcgtcggcg gcgagcattc cggtcttgat ggccgcgtgg ctgcccttga tgcggcttga
     2761 gttcaggtgc ccggcttcgc agccgaccaa cgcgccgcct ttgaacacgg ttttcggcag
     2821 gctgaggatc ccgcctgccg tgatcgcacg cgcaccgtag ccgacgcgtt tgccgccttc
     2881 gagaaacttg cggatttccg gatgcgtctt ccagcgctgc atctcctcga acgggctgag
     2941 ccatggattc gcatagtcga ggccgatgac gaaaccgagc tccacctggt gattgtcgag
     3001 gtggtagagg aacgagccgc cgtagatggc cggatcgagc ggccagccgg cggtatggag
     3061 cacgaggccc ggctcgtgct tggccggatc gatctcccag agctccttca ggccgatgcc
     3121 gtaggtttgc ggatccctgc cttcatcgag cttgaagcgc gcgatgaggt gcttgccgag
     3181 gctgccgcgc gaaccctcgg cgaagatcgt gtacttggca tgcagctcca tgccgagctg
     3241 gaagttcccg gtcggcttgc tgtccttgcc gatcccgagg ttcccggtcg ccacgccctt
     3301 gaccgaaccg tcctcgtcgt agagcacctc ggcggccgga aaacccggaa agacttcgac
     3361 gccgagacct tcggcctgct gcgccatcca gcgcaccacg ttgccgaggc tgacgatgta
     3421 gttgccgtcg ttcttgaagc aatcggggag gaggaagtgg ggcgtggcct tgg
//
LOCUS       DASVHM010000094         1501 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_511931, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000094 DASVHM010000000
VERSION     DASVHM010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511931"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1501)
                     /locus_tag="VF308_01800"
     CDS             complement(<1..>1501)
                     /locus_tag="VF308_01800"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7435415.1"
                     /translation="VERYGFGTPFWQGRERAKYPKVVEELKTNLKDVAQYYHASAQKS
                     KKVEDYQQAAHWYRDYLSFFPDDPDSAATNYLLAETLYESQQYAEATAEYERTAYQYP
                     KNEKSGAAGYASLVAYQKQEERLAGSAKSDWHKRSIDAGVKFAESFPEHPDSGGVLTR
                     AAQDVFALKDLPRAIQLSEQVLAKQPAVEPPKQRIAWTIIGQSQYDLAVYDKAEGAYV
                     KARELVPASDPLRGDLTERIASAVYKQGEAKQKAGDGAGAVEDYLRVARVAPDSKIRA
                     TAEYDAATQLIVLKDWPRAIDVLETYRRSYPKSDFAAEVTRKLAVAYGEAGRPGDAAI
                     EFEHIAANPAEERTVRREALLQSAELYAKANNTPRAVGMLEHFVADFPAPLADAEEAR
                     QKLADIAAKSGDSTRQTYWFREIVKADAQAGQGRTDRTRYLAAKAQLALAAPARDAFR
                     AVTLGQPLKKSLIAKRKAMEAAVAGYKSAAAYEVAEVVTASTFEIAGLYR"
BASE COUNT          204 a          529 c          473 g          295 t
ORIGIN      
        1 cggtagagcc ccgcgatctc gaatgtcgag gcggtgacca cctcggccac ctcgtaagcc
       61 gccgcgctct tgtagccggc gaccgccgct tccatcgcct tcctcttcgc gatgagactc
      121 ttcttcagcg gctgcccaag cgtcaccgcg cggaacgcat cgcgcgccgg cgccgcaagc
      181 gcaagctgcg ccttcgccgc aaggtaccgt gtccggtcgg tgcgcccctg ccctgcctgc
      241 gcgtcggcct tcacaatctc ccgaaaccag tacgtctggc gagtactgtc gccgctcttc
      301 gccgcgatgt cggcaagctt ctgccgcgct tcctcggcat cggcgagcgg cgccgggaaa
      361 tcggccacga agtgctcgag catgccgacg gccctaggtg tgttgttagc cttggcatac
      421 agctccgcgg actgcagcag cgcctcgcgc cgcacggtgc gctcctcggc agggttcgcg
      481 gctatgtgtt cgaactcgat agcggcatca cccgggcgcc cagcctcccc gtaagcgacc
      541 gcgagcttgc gcgtgacttc agcggcgaag tcgctctttg gatagctgcg tcgataggtc
      601 tcaagcacgt cgatggcccg cggccagtcc ttcaggacga tgagctgcgt tgccgcatcg
      661 tactcggcgg tcgcgcggat cttagagtcc ggggcgaccc gcgcgacgcg caggtagtcc
      721 tcaacggcgc cggccccatc tcccgccttc tgcttggcct cgccctgttt gtacacggca
      781 gaggcgatgc gctcggtcag atccccgcgc agcggatcgc tcgccggcac cagttcccgc
      841 gccttcacgt aggcaccttc cgccttgtcg tacacggcga ggtcgtattg cgactggccg
      901 atgatggtcc aggcgatgcg ctgcttcggt ggctcgacgg ccggctgctt cgcgagcacc
      961 tgctctgaca gctggatcgc gcgcggcagg tccttcagcg cgaacacgtc ctgcgctgcg
     1021 cgcgtaagca ccccgccgct atcggggtgc tcggggaagg actcggcgaa cttcacgccc
     1081 gcgtcgatcg agcgcttgtg ccagtcgctc ttcgcgctgc ccgccagacg ctcctcctgc
     1141 ttttggtagg cgacgagcga ggcgtagcct gccgcgcctg acttctcgtt cttcggatac
     1201 tggtaggccg tgcgctcgta ctcggcggtc gcctccgcat actgctggct ctcgtacagc
     1261 gtctcggcca gcaggtagtt cgtcgcggcg gaatccgggt cgtcgggaaa gaagctgagg
     1321 tagtcgcgat accagtgcgc cgcctgctgg taatcctcga ccttcttgga tttctgcgcg
     1381 cttgcgtggt agtactgcgc gacgtccttc agattggtct tgagctcctc cacgaccttc
     1441 gggtacttcg cccgctcgcg gccctgccag aagggcgtcc cgaagccgta gcgctcgacg
     1501 t
//
LOCUS       DASVHM010000095        10530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_79314, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000095 DASVHM010000000
VERSION     DASVHM010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 10530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10530
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79314"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VF308_01805"
     CDS             complement(<1..185)
                     /locus_tag="VF308_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435416.1"
                     /translation="MSVDSTLASGDLATLLTGQAAKLPAGLAATKPAWLKALRAQAVE
                     RVGALKLPTSHDEAWRFT"
     gene            complement(182..964)
                     /gene="sufC"
                     /locus_tag="VF308_01810"
     CDS             complement(182..964)
                     /gene="sufC"
                     /locus_tag="VF308_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEX7435417.1"
                     /translation="MLEVRGLCASVNGTPILKGLDFSVKSGEVHAIMGPNGSGKSTFA
                     KVLAGHTAYEVTAGEVLYQGRDLLELAPEARARAGIFLAFQYPIEIPGVGNSQFLRLA
                     YNTVQAERGKEELDPLEFDDLVRERMKLLEMSPEFLGRSVNEGFSGGEKKRNEILQMA
                     LLEPTLAILDETDSGLDIDALRIVSKGVNHLAGQDNAIVLVTHYQRLLNYIVPDYVHV
                     MDGGRIVRTGGRELALELEERGYEGIEADAAAAAPATTGALP"
     gene            complement(985..2421)
                     /gene="sufB"
                     /locus_tag="VF308_01815"
     CDS             complement(985..2421)
                     /gene="sufB"
                     /locus_tag="VF308_01815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004174036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEX7435418.1"
                     /translation="MSAQLQDLVNRPYKHGFVTDIESEVAAKGLSEDTIRLISAKKNE
                     PEWLLEFRLKAFRHWLTMTPPEWANVKYPPIDFQAISYYSAPKPRPKLASMDEVDPEL
                     LRTFEKLGVPMHERAALAGVAVDVIFDSVSVTTTYKARLAEVGIVFGSISEAVQNHPE
                     LVRKYLGTVVPSGDNYYAALNSAVFTDGSFCYIPKGVKCPMDLSTYFRINTEETGQFE
                     RTLIVAEEGASVSYLEGCTAPKFDTNQLHAAVVELVALDRADIKYSTVQNWYAGDENG
                     IGGIYNFVTKRGLCKGVDSRISWTQVETGSAITWKYPSCVLVGDNSVGEFYSVAVTNH
                     HQQADTGTKMIHIGRNTRSTIVSKGISAGRSSNSYRGLVKILPTAHDARNHSQCDSML
                     VGQECSASTFPYIQVRNAGAKVEHEASTSKIGEDQLFYFAQRGIGAEDAVSMIINGFC
                     KDVFRQLPMEFAVEATKLLGLKLEGSVG"
     gene            complement(2432..2770)
                     /locus_tag="VF308_01820"
     CDS             complement(2432..2770)
                     /locus_tag="VF308_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HEX7435419.1"
                     /translation="MAITLTEAAARQVRTQLAKRGKGLGLRIGVKNVGCSGFAYTYEI
                     ADDLRDGERVFEDHGASLVVDAKSLAFVDGARLDFVSEGLKQAFQVENPNVDSTCGCG
                     ESFNLKAGVA"
     gene            complement(2781..3038)
                     /locus_tag="VF308_01825"
     CDS             complement(2781..3038)
                     /locus_tag="VF308_01825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004528365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2249 domain-containing protein"
                     /protein_id="HEX7435420.1"
                     /translation="MTPAHTHLSADSVYPFDARGVAKRFRHAAIFGALDSLTPGETMR
                     FVNDHDPLPLLGQLEARYGDSVTIEYRQREPGAIAIDFIRR"
     gene            complement(3074..3538)
                     /locus_tag="VF308_01830"
     CDS             complement(3074..3538)
                     /locus_tag="VF308_01830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEX7435421.1"
                     /translation="MRLTTMTDYSMRLLMYVGQHPGRLCTISEVAGVYGISEAHLMKI
                     THQLGLAGWLETVRGKGGGIRLAAAPADINLGAVVRSIESDFALVDCLTADNACMLTG
                     SCRLTSIVSEALQSFMAHLDRHTLADLLPAPRDGAPRLRPMTFGKRPARVPS"
     gene            complement(3570..4754)
                     /locus_tag="VF308_01835"
     CDS             complement(3570..4754)
                     /locus_tag="VF308_01835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015041567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HEX7435422.1"
                     /translation="MSSITHLKEPAAPPQAAPNLHAFLELAFRPLYLAGTAWALIAIG
                     IWVWAPQILAGPLHGIAWHAHEMLWGFIATVAVAFLMTAGANWTGINPLKDRALGVAC
                     VLWLVARMGFLAGGDAMFQVGVAAELGFFLLAAVAMMRSVYRAKNARNYAVPWLLVAL
                     GTADGLYLLAAHDGDYALLMQRFNVGLLVMALIALLIARRVIPFFAMRAVAGLQIPMQ
                     TRIGQIQLAACGVAAACLLAGQKMPAAVALGLTGALSLLQVLRWKPWAVSGQPLLWIL
                     YAGYAGLGIGLLVAACAAGGVDLPPALPVHLIAMAGFSVLIIGMVTRTALGHLGRPLA
                     ADRTIVASYALVLVAVALRLVALAPSAFSQPALQLSAAAWIAAFTLYLWRFTPLMIRP
                     RR"
     gene            5047..5445
                     /locus_tag="VF308_01840"
     CDS             5047..5445
                     /locus_tag="VF308_01840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HEX7435423.1"
                     /translation="MNIDYATVKLVHQAAVVLSLTGFVARGAASFAGAGWVGSRAART
                     LPHVIDTVLLLSALILAWMLRLTLDSAPWLIAKIAGLVVYVGLGVVALRAQRPLRVRA
                     AAWVGALLTAAWIVSVALTKSPAGFFRTLL"
     gene            5515..6912
                     /gene="hemN"
                     /locus_tag="VF308_01845"
     CDS             5515..6912
                     /gene="hemN"
                     /locus_tag="VF308_01845"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEX7435424.1"
                     /translation="MKPTPDPRAVLTEELLRKFDTPGPRYTSYPTADRFAESFGPADA
                     VRVLEARRQGSSTAPLSLYVHIPFCESLCYYCACNKIITKHHERATEYLDALETELAL
                     VVESLGTGRPVSQLHFGGGSPTFLSDAELARVMQALSTAFRLTADSEVSIEVDPRTVT
                     PTRLAHLRQLGFNRLSFGVQDFDIKVQEAVHRVQPFEMVRELMTSARELGFVSINADL
                     IYGLPKQTPETFARTVRQMGELRPDRIALYAYAHLPERFKPQRRVAATDLPSAPQRIA
                     MLGDAIAGFLSRDYCYIGMDHFALPDDSLAVAKREGRLHRNFQGYSTQPDCDLVALGV
                     SAIGRVGAAYYQNAKTLSAYYDSLGQRLLPVVRGYSLTRDDELRRDVIMALMCQGRLE
                     FEPIERAHGVTMADYFSHELESMRAMAQSGLVEMEERAIQVTAPGWFLVRAIAMVFDR
                     HLQSAKERHQFSKVV"
     gene            complement(7024..7099)
                     /locus_tag="VF308_01850"
     tRNA            complement(7024..7099)
                     /locus_tag="VF308_01850"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7064..7066),aa:Ala,seq:cgc)
     gene            7275..7697
                     /locus_tag="VF308_01855"
     CDS             7275..7697
                     /locus_tag="VF308_01855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubrerythrin family protein"
                     /protein_id="HEX7435425.1"
                     /translation="MGLKGSKTEQSLRDAFAGESQANRRYLYFANKADIEGQNDVAAL
                     FRSTAEGETGHAHGHLEFLEHGVGDPATGLPIGSSRQNLMAAVAGETHEYTDMYPGMA
                     KIARDEGFDEVADWFETLAKAERSHANRYQKALDALVD"
     gene            7758..9107
                     /locus_tag="VF308_01860"
     CDS             7758..9107
                     /locus_tag="VF308_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heterodisulfide reductase-related iron-sulfur
                     binding cluster"
                     /protein_id="HEX7435426.1"
                     /translation="MTLREGNLEAPTRHPIDWRSDDYRDEGKALAEMERVFDICHGCR
                     RCVSLCQSFPTLFDLIDASADGEVHGVDKKDYAKVVEQCYLCDLCYMTKCPYVPPHPW
                     NIDFPHLMLRAKAIRYGKGEVGMGAKLLASTDVHGQLAGIPIVVQAVNAANRTRPVRK
                     VIEAALDVHRDAWLPPLATRRFRGSVAKKGRGRVVDGERSPGKVALFATCLINYNEPG
                     IGRDLVAVLEHNEIAYEVVEKESCCGMPKLELGDLEGVARHKERNIPVLARYAREGFA
                     ILTAIPSCTLMFKQELPLMFPDDADVKAVQEAMFDPFEYLVARHRDGLLKTDFTRPLG
                     KVSYHVPCHGRVQKIGRKTEEMFKLIGKTVTVELTTVERCSGHAGMYGVKTETHPLAM
                     KIGRPVFKAMAAPAPDVISSDCALAGHHIAQGMANDGAAPTELRHPLSLLRRAYGLD"
     gene            9117..9695
                     /locus_tag="VF308_01865"
     CDS             9117..9695
                     /locus_tag="VF308_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3501 family protein"
                     /protein_id="HEX7435427.1"
                     /translation="MAITRSSLLTLEAYAKVRKANQVEVIAHRKLRTVRLGEHLSVQF
                     EDETTIRRQIQEMLHIEKIFDEAGIESEIEAYTPLVPDGTNWKATMLIEYPDPNERKR
                     ELARLIGVQDRVFVEVEGHSRVYAIADEDLDRENDEKTSAVHFLRFELAPAARGAVRA
                     GASVRLGCDHTNYPAHTDISQETLASLAGDLR"
     gene            9809..10357
                     /locus_tag="VF308_01870"
     CDS             9809..10357
                     /locus_tag="VF308_01870"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004192241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEX7435428.1"
                     /translation="MKTIGDKLEAFSVIGVKPGFNQHEENGVSAFEAITEKSFPGKWK
                     VIYFWPKDFTFVCPTEIVGFDKLASQFEERDAVLMGGSTDNEFAKLGWRRDHKDLSKL
                     GHWSFGDPKGSLVDQLGIRDKTEGVALRATFIVDPDNTIQHVSVNNLNVGRNPEEVLR
                     ILDGLQTDELCPCNRTVGGQTL"
     gene            10360..>10530
                     /locus_tag="VF308_01875"
     CDS             10360..>10530
                     /locus_tag="VF308_01875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010926957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEX7435429.1"
                     /translation="MEFLAAIKEQIPDYAKDIRLNLDGVIARSSLAPEDALGVALAAA
                     FAAKSKPLIDAFR"
BASE COUNT         1788 a         3509 c         3487 g         1746 t
ORIGIN      
        1 gtgaagcgcc aggcttcgtc gtgcgaggtc ggcaacttca gcgcgccgac ccgctcgacc
       61 gcctgcgcac gcaatgcctt cagccaggcc ggcttcgtcg ccgcgagacc cgcgggcagc
      121 ttcgccgcct ggccggtcag cagcgttgcc agatcgccgc tggccaaagt gctgtcgaca
      181 ctcacggcag cgctccggtg gtagccggcg ccgcggctgc cgcatcggct tcgatcccct
      241 cgtagccgcg ttcctcgagc tcgagcgcga gctccctgcc gccggtcctg acgatgcggc
      301 caccgtccat cacgtgcacg tagtcgggaa cgatgtagtt cagcagcctc tggtagtgcg
      361 tcaccagcac gatggcgttg tcctggccgg cgaggtggtt cacgcccttg gagacgatgc
      421 gcagcgcgtc gatgtcgagg ccggagtcgg tctcgtcgag gatcgcgagc gtcggctcta
      481 gcaatgccat ttggaggatc tcgttgcgct tcttctcgcc gcccgaaaag ccttcgttga
      541 cgctgcgacc gaggaactcg gggctcatct cgagcagctt catcctctcg cgcacgaggt
      601 cgtcgaactc gagcgggtcg agctcctcct tgccgcgctc ggcctgcacg gtgttgtagg
      661 ccaggcgcag gaactggctg ttgccgacgc cgggaatctc gatcggatac tggaacgcga
      721 gaaagatgcc ggcgcgcgcg cgcgcttcgg gggccagctc gagcaggtcg cggccttggt
      781 agagcacctc gccggcggtc acctcgtagg ccgtgtggcc ggccagaacc ttcgcgaacg
      841 tgctcttgcc cgagccgttc ggccccatga tcgcgtggac ctcgccactc ttcacgctga
      901 agtcgaggcc cttgaggatc ggcgtgccgt tgacgctggc gcacaggccg cgcacttcga
      961 gcagggtccg gctgttcggc aggatcatcc gacgctccct tcgagcttga ggccgagcag
     1021 cttggtcgcc tcgaccgcga actccatcgg cagctggcgg aaaacgtcct tgcagaagcc
     1081 gttgatgatc atcgagacgg cgtcctcggc gccgatgccg cgctgcgcga aatagaacag
     1141 ctggtcttcg ccgatcttcg acgtcgacgc ctcgtgctcg accttggcgc cggcgttgcg
     1201 cacctggatg tacgggaacg tgctggcgct gcactcctgg ccgaccagca tcgagtcgca
     1261 ctgcgaatgg ttgcgcgcgt cgtgggcggt cggcaggatc ttcaccaggc cgcgatagga
     1321 gttgctcgac ctgcccgccg agatgccctt gctgacgatc gtgctgcggg tgttcctgcc
     1381 gatatggatc atctttgtgc cggtgtcggc ctgctggtgg tgattcgtca ccgcgaccga
     1441 atagaactcg ccgaccgagt tgtcgccgac caggacgcac gacgggtact tccacgtgat
     1501 cgccgagccg gtctcgacct gggtccacga aatgcgcgag tcgacgcctt tgcacaggcc
     1561 gcgcttcgtg acgaagttgt agatgccgcc gatgccgttc tcgtcgccgg cgtaccagtt
     1621 ctgcaccgtc gaatacttga tgtcggcgcg gtcgagagcg accagctcga cgaccgcggc
     1681 gtgcagctgg ttggtgtcga acttcggcgc ggtgcagcct tcgaggtacg acaccgaggc
     1741 gccttcctcg gcgacgatca gggtgcgttc gaactggccg gtctcctcgg tgttgatgcg
     1801 gaagtacgtc gacaggtcca tcgggcactt cacgcccttc gggatgtagc agaacgagcc
     1861 gtcggtgaag accgccgaat tcagcgccgc gtagtagttg tcgccgctcg gcaccacggt
     1921 gccgaggtac tttctcacca gctccgggtg gttctgcacc gcctccgaga tcgagccgaa
     1981 gacgatgccg acctcggcca gcctggcctt gtaggtggtc gtgaccgaga cgctgtcgaa
     2041 gatcacgtcg accgcgacgc cggccagcgc ggcacgctcg tgcatcggca cgccgagctt
     2101 ttcgaaggtg cgcagcagct cggggtcgac ctcgtccatg ctggcgagct tgggcctggg
     2161 cttgggcgcc gagtagtagc tgatcgcctg gaaatcgatc ggcgggtact tgacgttggc
     2221 ccactccggc ggcgtcatcg tcagccagtg gcgaaacgcc ttcaggcgga actcgagcag
     2281 ccactcgggc tcgttcttct tcgccgagat gagccggatc gtgtcttcgc tcaggccctt
     2341 ggccgcgacc tccgactcga tgtcggtgac gaagccgtgc ttgtagggcc ggttgacgag
     2401 gtcttgcaac tgggcactca tgcgcgctcc ttcaggcgac cccggccttc aggttgaagc
     2461 tctcgccgca gccgcaggtg ctgtcgacgt tcgggttctc gacctgaaag gcctgcttca
     2521 ggccctcgct gacgaagtcg aggcgggcgc cgtcgacgaa cgcgaggctc ttcgcgtcga
     2581 ccaccaggct ggcgccgtgg tcttcgaaca cgcgctcgcc gtcgcgcagg tcgtcggcga
     2641 tctcgtaggt gtaggcaaag cccgagcagc cgacgttctt cacgccgatg cgcagcccga
     2701 gccccttgcc gcgctttgcg agctgggtgc gaacctgcct ggcggcggcc tcggtcagtg
     2761 tgatcgccat gatttgtctc ctaacgccgg atgaagtcga tcgcgatcgc ccccggctcg
     2821 cgctgccggt attcgatcgt caccgagtcg ccatagcggg cttcgagctg gccgagcaac
     2881 ggcagcggat cgtggtcgtt gacgaagcgc attgtctcgc cgggcgtgag cgaatcgagc
     2941 gcgccgaaga tggcggcgtg gcgaaagcgc ttggcgacgc cgcgcgcatc gaacggatag
     3001 acgctgtcgg cggacaggtg ggtgtgggct ggggtcatgg tcgggccttc aaaggtgggg
     3061 aacaagcggg cggtcagctc ggcacacggg ccggccgttt gccgaaggtc atcggccgca
     3121 gccgcggggc gccgtctctc ggcgccggca gcaggtcggc gagcgtatgg cgatcgaggt
     3181 gcgccatgaa actctgcagc gcttcgctga cgatgctggt cagccggcag ctgccggtca
     3241 gcatgcaggc gttgtcggcc gtcaggcagt cgacgagagc gaagtcggat tcgatgctgc
     3301 gcaccacggc gccgaggttg atgtcggcag gcgccgctgc caggcggatg ccgccgccct
     3361 tgccgcgcac cgtttccagc cagccggcca ggcccagctg gtgcgtgatc ttcatcaggt
     3421 gcgcctcgga gatcccgtag acgccggcca cttcggagat cgtgcacagg cgcccgggat
     3481 gctggcccac gtacatcagc aggcgcatcg agtagtcggt catcgtcgtc aggcgcatgc
     3541 cgtactccgg gtcaaggcgg tgcggggcgt catctgcgcg ggcgaatcat cagcggcgtg
     3601 aatcgccaca ggtacagggt gaacgcggcg atccacgcgg ccgccgagag ctgcagcgcc
     3661 ggctgactga atgccgaagg cgcgagcgcg accaggcgca gcgcgacggc cacgagcacc
     3721 agcgcgtagc tggcaacgat ggtgcggtcg gcggcgagcg ggcgtccgag gtggccgagc
     3781 gcggtgcgcg tcaccatgcc gatgatcagg accgagaagc ccgccatcgc gatcaggtgc
     3841 accggcaagg caggtggcag atcgacgccg ccagccgcgc aggcggcgac gagcaagccg
     3901 atgcccaagc cggcgtagcc ggcgtacagg atccacagca gcggctggcc gctcaccgcc
     3961 cagggcttcc aacgcagcac ctgcagcagc gagagcgccc cggtcaatcc gagcgcgacg
     4021 gcggcaggca tcttctggcc tgccagcagg caggccgcgg cgacgccgca cgcagccagc
     4081 tggatctggc cgatgcgcgt ctgcatcggg atctgcaggc cggcgaccgc gcgcatcgcg
     4141 aagaacggga tcacgcgccg ggcgatcagc agcgcgatca gcgccatcac cagcaggccg
     4201 acgttgaagc gctgcatcag cagcgcgtag tcgccgtcgt gcgccgcgag caggtacagg
     4261 ccgtcggccg tgccgagcgc gaccagcagc cacggcactg cgtagttgcg tgcgttcttc
     4321 gcacggtaga ccgaacgcat catcgcgacc gcggcgagca ggaagaaacc gagctcggcg
     4381 gcgacgccga cctggaacat cgcgtcgcct ccggccagaa agcccatgcg tgcgaccagc
     4441 cacaggacgc acgcgacgcc gagcgcccga tccttcagcg gattgattcc ggtccagttg
     4501 gcgcccgcgg tcatcaggaa ggcgaccgcg accgtagcga tgaagcccca gagcatttcg
     4561 tgggcatgcc aggcgatgcc gtgcaggggg ccggccagga tctgcggcgc ccagacccag
     4621 atgccgatcg cgatcaacgc ccacgcggtg ccggcgaggt agagcggccg aaacgcgagt
     4681 tcgaggaatg cgtgcaggtt cggcgcggcc tgcggcggcg cagccggttc cttcaggtgg
     4741 gtgatgctgc tcatggtcga tcgcggtcac cgccgagtgt cgcgataaga tttatatcag
     4801 agatatctta tgagcggcat gagaccttgt caacccatct ctgctggaag gcttcgcggc
     4861 ggcggacggc tcgccgttga ccctgtataa gacgacccgc agtgaccgtc gtccttccaa
     4921 ctcgccactt gtcggcgggt ctcggcttcg atcgcgagtt gcgtcccgtc cgtctccacg
     4981 gcacggcgtc ccctccctga tggcggcgga cacctctcgc gaacccggca taagcttcgc
     5041 gaccgcatga acatcgacta cgccacggtc aagctcgttc accaggctgc cgtggtgctc
     5101 tcgttgacag gctttgtcgc gcgcggagcg gcgagcttcg ccggggccgg ttgggtcggc
     5161 agcagggcag ccaggactct tcctcatgtc atcgatacgg tgctgcttct gtccgcgctc
     5221 atcctggcct ggatgctgcg gctgacgctg gacagcgcac cctggctgat tgcgaagatc
     5281 gccggtctgg tcgtgtatgt cgggctgggg gtggtggcgc tgcgggctca gcgcccgctc
     5341 cgggtacgcg cagccgcctg ggtgggggca ttgctcactg cagcctggat cgtctcggtc
     5401 gccctcacga agagcccggc gggtttcttc aggacgctcc tttaggtcct cttcttgaca
     5461 cgcgtcaagg catccaggcc ggggcatgcc tcaccatagg cggtgcttac gccaatgaag
     5521 ccaacgccag acccccgagc ggtgctcacc gaagagctgc tgcggaagtt cgacacgccg
     5581 ggcccgcggt atacctcgta tccgacggcc gaccgctttg ccgagagctt cggcccggcc
     5641 gatgccgtcc gggtgctcga agcgcgcagg cagggcagtt ccaccgcccc gctgtcgttg
     5701 tatgtccaca tcccgttctg cgaatcgctc tgttactact gcgcctgcaa caagatcatc
     5761 accaagcatc acgaacgggc caccgaatac ctcgacgcgc tcgagacgga actggccctg
     5821 gtggtcgagt cactcggtac gggtcggccg gtctcgcagc ttcacttcgg tggcggctcc
     5881 ccgaccttcc tgtccgacgc cgagctggct cgtgtgatgc aagcgttgag caccgccttt
     5941 cgcctcaccg ccgactccga ggtctcgatc gaagtggatc cccgcacggt cacgccgacc
     6001 cgtctcgcgc accttcgcca actcgggttc aaccgcctga gcttcggcgt ccaggatttc
     6061 gacatcaagg ttcaggaagc agtgcatcgg gtgcagccct tcgagatggt ccgggagttg
     6121 atgacgagcg ctcgcgagct gggcttcgtc tccatcaatg ccgacctgat ctacgggctt
     6181 ccgaagcaga cccccgaaac cttcgctcga acggttcggc agatgggcga gctgcgaccg
     6241 gaccggatcg cgctctacgc ctacgctcat ctgccggaac gcttcaagcc acaacgccgt
     6301 gtcgccgcca cggacctgcc gagcgctcct cagcgaattg cgatgttggg cgatgccatt
     6361 gccggcttcc tgtcccggga ctactgctat atcgggatgg accacttcgc ccttcccgac
     6421 gactcgctcg ccgtggcgaa gcgcgaaggt cgactgcatc ggaatttcca gggctacagc
     6481 acccagcccg actgtgatct ggttgcgctc ggcgtgtcgg ccatcggacg cgtcggtgcg
     6541 gcgtactacc agaacgcgaa gactctgtcg gcgtactacg actcgctggg ccaacgcttg
     6601 cttccggtcg tccgcggcta ttccctgacc cgcgacgacg agttgcgacg cgacgtgatc
     6661 atggcgctga tgtgccaggg acgcctcgaa ttcgaaccga tcgagcgcgc ccacggcgtg
     6721 accatggcgg actacttctc acacgagctc gaatcgatgc gcgccatggc gcagtcgggt
     6781 ctcgttgaga tggaggaacg ggcgatacag gtcacggctc caggctggtt tcttgttcgc
     6841 gccattgcaa tggtgttcga cagacacttg cagtctgcca aggagcggca ccagttctcg
     6901 aaggtggtct agccagccgg gctcgagcgt cccggggcgg ggcgcagctg gacaagaaaa
     6961 agccctagag cgttgattct ctagggcttt ccggacgccg ccggtcgttg ctggattgtc
     7021 gaatggtgga gaggaggagg atcgaactcc cgaccttcgc attgcgaacg cgacgctctc
     7081 ccagctgagc taccccccca ctgcaggcgc aagtctagca aacggggcgc ggggccgacc
     7141 tcgccgccgc ggagatagcc cgcgtcgatt cgtcgaattg aggcgaagta ttgctggcgc
     7201 gccgcgaacg cgctagcgtc gggtgatcgt cggtgcgctc tcgcgccggt ccgcggccaa
     7261 ccaggagatt cgagatggga ctcaagggat cgaaaaccga gcagagcctg cgcgatgcgt
     7321 tcgcgggcga atcgcaggcc aaccgtcgct acctctattt cgcgaacaag gccgacatcg
     7381 aagggcagaa cgacgtcgcg gcgctgtttc gctcgaccgc cgagggcgag accggccacg
     7441 cgcacggcca cctcgagttc ctcgagcacg gcgtcggcga tcccgcgacc ggcctgccga
     7501 tcggcagcag ccgccagaac ctgatggccg ccgtcgccgg cgagacgcac gagtacaccg
     7561 acatgtaccc gggcatggcc aagatcgcgc gcgatgaggg cttcgacgag gtcgccgact
     7621 ggttcgagac gctcgccaag gccgagcgct cgcacgccaa ccgctaccag aaggcgctcg
     7681 acgcgctcgt cgactgaggc gcgacccgag caccccgaca agggcccgcg cggcccttgt
     7741 tcgttgatgg agagacgatg acgctgcgcg aaggcaacct cgaggcgccg actcggcatc
     7801 cgatcgactg gcgcagcgac gactatcgcg acgagggcaa ggccctcgcc gagatggagc
     7861 gcgtcttcga catctgccac ggctgccgcc gctgcgtcag cctgtgccag tcgttcccga
     7921 ctctcttcga cctgatcgac gccagcgccg acggcgaggt gcacggcgtc gacaagaagg
     7981 actacgccaa ggtcgtcgaa cagtgctacc tgtgcgacct ctgctacatg accaagtgtc
     8041 cgtacgttcc gccgcatccg tggaatatcg acttcccgca cctcatgctt cgcgccaagg
     8101 cgatccgcta cggcaagggc gaagtcggca tgggcgcgaa gctgctcgcg tcgaccgacg
     8161 tgcacggcca gctcgccggc atcccgatcg tcgtgcaggc ggtcaacgcg gcgaaccgga
     8221 cgcggccggt gcgcaaggtg atcgaggcgg cgctcgacgt ccaccgcgac gcctggctgc
     8281 cgccgctggc gacgcggcgc ttccgcggct cggtggcgaa gaaagggcgc ggccgcgtcg
     8341 tcgacggcga gagaagcccc ggtaaggtcg cgctgttcgc gacctgcctg atcaactaca
     8401 acgagcccgg catcggccgc gatctcgtcg cggtgttgga gcacaacgag atcgcctacg
     8461 aggtcgtcga gaaggaaagc tgctgcggca tgcccaagct cgagctcggc gacctcgagg
     8521 gcgtcgcccg ccacaaggag aggaacatcc cggtgctcgc ccggtacgcg cgcgagggct
     8581 tcgccatcct gaccgcgatc ccgtcgtgca cgttgatgtt caagcaggag ctgccgctca
     8641 tgtttcccga cgacgccgac gtgaaggcgg tgcaggaggc gatgttcgat ccgttcgagt
     8701 acctcgtcgc gcgccatcgc gacggcctgc tcaagaccga cttcacgcgg ccgctcggca
     8761 aggtgagcta ccacgtgccg tgccacggcc gggtgcagaa gatcggccgc aagaccgagg
     8821 agatgttcaa gctgatcggc aagacggtga cggtcgagct gaccaccgtc gagcgttgct
     8881 ccgggcacgc cggcatgtac ggcgtgaaga ccgagaccca tccgctggcg atgaagatcg
     8941 gccggccggt cttcaaggcg atggcagctc cggcgcccga cgtcatcagc tccgactgcg
     9001 cgctcgccgg ccatcacatc gcgcagggca tggccaacga cggcgccgcg ccgaccgagc
     9061 tgcgccaccc cttgagcctg ctgcgccggg cgtacggact ggactaggcc ctggccatgg
     9121 ccatcacccg atcgagcctg ctcaccctcg aggcctacgc gaaggtgcgc aaggccaacc
     9181 aggtcgaggt gatcgctcac cggaagctgc gaacggttcg gctgggcgag cacctgagcg
     9241 ttcagttcga ggacgagacg acgatccgcc ggcagatcca ggagatgctg cacatcgaga
     9301 agatcttcga cgaggccggc atcgagagcg agatcgaggc ttacacaccg ctcgtccccg
     9361 acggaacgaa ctggaaggcg acgatgctga tcgagtaccc cgatccgaac gagaggaagc
     9421 gcgagctcgc acgcctgatc ggcgtccagg accgcgtctt cgtcgaggtc gaggggcact
     9481 cgcgcgtcta cgcgatcgcc gacgaggacc tcgaccgcga gaacgacgag aagacctcgg
     9541 ccgtccactt cctgcgcttc gagctcgcgc cggcggcgcg cggcgcggtt cgcgccggcg
     9601 ccagcgtccg cctcggctgc gaccacacga actatccggc ccacaccgac atctcgcagg
     9661 agacgctcgc gagcctggcc ggcgacctgc gctagagcgc cgcgtccaat cgcctcatta
     9721 ggtgttttca attggttgtt gctatccgat agcctaaact tcgttcctgt cgcgcccttc
     9781 ggcgctcaat caacggcaca ggaacctaat gaaaaccatt ggcgacaagc tcgaagcgtt
     9841 cagcgtcatc ggcgtcaagc ccggcttcaa ccagcacgag gaaaacggcg tctcggcgtt
     9901 cgaggcgatc accgagaaga gcttcccggg caagtggaag gtcatctact tctggccgaa
     9961 agacttcacc ttcgtctgcc cgaccgagat cgtcggcttc gacaagctgg cctcgcagtt
    10021 cgaggagcgc gacgcggtcc tgatgggcgg ctcgaccgac aacgagttcg ccaagctcgg
    10081 ctggcgccgc gaccacaagg acctctccaa gctcggccac tggagcttcg gcgacccgaa
    10141 aggctcgctc gtcgaccaac tcggcattcg tgacaagacg gaaggcgtgg cgctgcgcgc
    10201 gaccttcatc gtcgaccccg acaacacgat ccagcacgtg agcgtcaaca acctcaacgt
    10261 cggccgcaac cccgaggaag tgctgcgcat cctcgacggc ctgcagaccg acgagctttg
    10321 cccgtgcaac cgcacggtcg gcggccagac gctctgatga tggaattcct cgccgcgatc
    10381 aaggagcaga tccccgacta cgccaaggac atccgcctca acctcgacgg cgtgatcgcg
    10441 cgctcgagcc tggcaccgga agacgcgctc ggcgtcgccc tggcggcggc gttcgccgcc
    10501 aagagcaagc cgctgatcga cgctttccgg
//
LOCUS       DASVHM010000096         1601 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_6482, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000096 DASVHM010000000
VERSION     DASVHM010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6482"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..476)
                     /locus_tag="VF308_01880"
     CDS             complement(<1..476)
                     /locus_tag="VF308_01880"
                     /inference="COORDINATES: protein motif:HMM:NF024674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmdB family metallophosphoesterase"
                     /protein_id="HEX7435430.1"
                     /translation="MPKILFIGDVVAEPGRRALATMLPRLREEHEPDFVVVNGENAAG
                     GMGITPATADEIFTIGADVITLGNHTYRHREIYPYLDGDKPIIRAANQHPSNPGRGWT
                     IVENGSLRLGVINLIGQFGMDHEGNPWDCADRIIREIKDDCDLLMVDIHAEMTSEKV"
     gene            545..1243
                     /locus_tag="VF308_01885"
     CDS             545..1243
                     /locus_tag="VF308_01885"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435431.1"
                     /translation="MSVLEGRSLVRRYDDLVALDRVSFAVTAGETIAVAGPNGSGKTT
                     LLSVLAGVQQPDEGEVDRHGSQLGWVPQRAAVYGKLTVRENLRLFARLERVADVDAAV
                     DRMLERIALAGRADTRAEELSGGMRQRLSIGVGLISDPVVLLLDEPTAALDPLQRERL
                     WELLQALVAQGIAILFSTHAANEVERHASRVLVLDAGALLYDGPPAQLGPGDHFEAAF
                     IDFLRAKRGEAAPA"
     gene            1240..>1601
                     /locus_tag="VF308_01890"
     CDS             1240..>1601
                     /locus_tag="VF308_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435432.1"
                     /translation="MKLRFLLAKDLTLLRRTPSIAVLLALYPALVAVLIGLAVGRPPA
                     KPRVAIVNQVPVLERTLLIGGKKFNLDTLINSVYKNVDAFNVKDRATALQAVRSGDAV
                     AAIVIPHDIIDQLQSPLA"
BASE COUNT          221 a          535 c          558 g          287 t
ORIGIN      
        1 actttttcgc tggtcatctc tgcgtggatg tcgaccatca gcaggtcgca gtcgtctttg
       61 atctcgcgga tgatccggtc ggcgcagtcc caggggttgc cttcgtggtc catgccgaac
      121 tggccgatca ggttgatcac gcccagccgc aatgacccgt tctccacgat cgtccagccg
      181 cgcccggggt tgctgggatg ttggttggcc gcgcggatga tcggcttgtc gccgtcgagg
      241 tacgggtaga tctcgcggtg gcggtaggtg tggttgccga gcgtgatcac gtcggcgccg
      301 atcgtgaaga tctcgtcggc ggtcgccggc gtgatgccca tgccgccggc cgcgttctcg
      361 ccgttgacga cgacgaagtc cggctcgtgc tcttcgcgca ggcgcggcag cattgtcgcg
      421 agcgcgcggc gcccgggctc ggccacgacg tcgccgatga aaaggatctt cggcatcggg
      481 caagtctacg ggccgctgcg agttgccgcg ggtggtcgtg cggtccgtag ttatgctggc
      541 cgacatgtct gtgctcgaag gccgctcgct ggtcaggcgc tacgacgacc tcgtcgcgct
      601 cgaccgggtg tcgttcgccg tgaccgccgg cgagacgatc gccgtcgccg gacccaacgg
      661 ctccggcaag acaacgctgc tgtcggtgct cgccggcgtg cagcagccgg acgagggcga
      721 ggtcgatcgc cacggatcgc agctgggctg ggtgccacag cgcgcggccg tctacggcaa
      781 gttgaccgtg cgcgagaacc ttcggctgtt cgcgcggctc gagcgggtcg ccgacgtaga
      841 cgcggcggtc gatcgcatgc tcgagcgcat cgcgctggcc ggccgcgcgg acacgcgcgc
      901 cgaggagctc tcgggcggca tgcgccagcg cctgagcatc ggtgtcggcc tgatctccga
      961 tccggtcgtg ctgttgctcg acgagccgac ggcggcgctt gacccgctgc agcgcgagcg
     1021 tctctgggag ctgctgcagg cgctcgtagc gcagggcatc gcgatccttt tctctacaca
     1081 cgccgccaac gaagtcgagc gtcacgcttc gcgagtgctg gtgcttgacg ccggcgcgct
     1141 gctctacgac gggccgcccg cgcagctcgg cccgggcgat cacttcgagg cggcgttcat
     1201 cgactttctg cgcgccaagc gcggcgaggc ggcaccggca tgaagctgcg ctttttgctc
     1261 gccaaggatc tcacgctgct tcggcgcacg ccgtcgatcg cagtcctgct ggcgctctac
     1321 ccggcgctgg tcgcggtgct gatcggcctg gcggtcggcc ggccgccggc aaaaccacgc
     1381 gtggcgatcg tcaatcaggt gccggtgttg gagcgcacgc tgctgatcgg cggtaagaag
     1441 ttcaacctcg acacgctgat caactccgtc tacaagaacg tcgacgcctt caacgtcaag
     1501 gaccgcgcca ccgcgctgca agcggtgcga tcgggcgacg cggtcgcggc gatcgtgatc
     1561 ccgcacgaca tcatcgacca gctccagtcg ccgctcgccc a
//
LOCUS       DASVHM010000097         2482 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1088561, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000097 DASVHM010000000
VERSION     DASVHM010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1088561"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..388)
                     /locus_tag="VF308_01895"
     CDS             complement(<1..388)
                     /locus_tag="VF308_01895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013393972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX7435433.1"
                     /translation="MAAFDTETVLWVHHWNESLFTFTTTRSQSLRFESGHFVMVGLEV
                     DGKPLMRAYSIASAHYEEHLEFFSIKVPHGPLTSRLQHLQVGDKVLIGRKPTGTLVLT
                     DLLPGRNLYLFATGTGLAPFMSIIRDP"
     gene            complement(394..1086)
                     /locus_tag="VF308_01900"
     CDS             complement(394..1086)
                     /locus_tag="VF308_01900"
                     /inference="COORDINATES: protein motif:HMM:NF037007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEX7435434.1"
                     /translation="MALTRDADLTRARILKAARNEFMRHGYSGARIERISCAGRSSDR
                     MIYYYFGSKEALYIEVLEGVYTELGAAESRLALDESRPLEALRTLIAFTWNYYLAHPE
                     FVALLSNENLQRGRHITKSLTVKQLSRPVLDILARILDEGTRQGVFRAGLEVRHVYLT
                     LAALGYFYLSNRYTLSSFLGSDLMQRGQCEAWLEEMTRVMLASVRADPPAEARAARTR
                     QNAGPRSPRRKT"
     gene            1248..2087
                     /locus_tag="VF308_01905"
     CDS             1248..2087
                     /locus_tag="VF308_01905"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HEX7435435.1"
                     /translation="MSARFERPASLVEATQLLAGGGCRVLAGGTDLYPAHVGRPLTRP
                     LVDITGIEGLRGIRRNPSGWSIGAATTWTDVLRAELPPLFDALKRAAREIGGVQIQNA
                     GTVAGNLCNASPAADGTPVLIALEAEVVLRSGEGERRVGAADFVLGSRRTACAPHELV
                     VAIEVPARSARARSVFLKLGGRRYLTISVTMVAVVLDADAAGVVSRAAVAVGSCSARA
                     RRLLALEAKLVGARLSADLPAAVAAADLEPLTPIDDLRASAAYRLDATATLLRRALAE
                     LAR"
     gene            2084..>2482
                     /locus_tag="VF308_01910"
     CDS             2084..>2482
                     /locus_tag="VF308_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011299721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEX7435436.1"
                     /translation="MTARDAQPAQVVRVRINQAARELVADPTRRLSDGLRDDLGLIGT
                     KIGCHAGDCGACTVLLDDEQVCSCIVALGSCEGRSVTTVEGLANADGTPSALQQAFVA
                     HGAAQCGACTPGMLMSAEALLRANPHPTEAE"
BASE COUNT          337 a          858 c          885 g          402 t
ORIGIN      
        1 cgggatcgcg gatgatgctc atgaacggcg ccaggccggt gccggtcgcg aacaggtaga
       61 ggttgcggcc gggcagcagg tcggtgagca ccagcgtgcc ggtgggcttc ctgccgatca
      121 gcaccttgtc gccgacctgc aggtgctgca gccgcgaggt cagcgggccg tgcggcacct
      181 tgatgctgaa gaactcgaga tgctcctcgt agtgggcgct cgcgatgctg taggcgcgca
      241 tcagcggctt gccgtcgacc tcgaggccga ccatcacgaa gtgcccgctc tcgaaacgca
      301 ggctctggct gcgcgtcgtc gtgaaggtga acagcgactc gttccagtga tggacccaga
      361 ggactgtctc ggtatcgaat gcggccatgg gggtcaggtt tttcgccgtg gggatcgggg
      421 cccggcattt tgccgggtgc gggcggcgcg cgcttcggca ggcgggtcgg cgcggaccga
      481 ggcgagcatt acgcgcgtca tctcttcgag ccaggcctcg cattgcccgc gctgcatcag
      541 gtcgctgccg agaaacgacg acagcgtgta gcggttcgag aggtagaagt agcccagggc
      601 ggcgagcgtc agatagacgt ggcgcacctc gaggccagcg cgaaagacgc cctggcgcgt
      661 gccctcgtcg aggatgcgcg cgaggatgtc gagcaccggc cgcgacagct gcttgaccgt
      721 cagcgacttg gtgatgtgac gcccgcgctg cagattctcg ttgctgagca gggccacgaa
      781 ttcggggtgc gcgaggtagt agttccaggt gaacgcgatc agcgtgcgca aggcctcgag
      841 gggccggctt tcgtcgagcg cgaggcggct ttcggccgcg ccgagttcgg tgtagacgcc
      901 ttcgagcacc tcgatgtaga gcgcctcctt gctgccgaag tagtagtaga tcatccggtc
      961 gctcgaccgc ccggcgcacg agatgcgttc gatgcgcgcg ccgctgtagc cgtggcgcat
     1021 gaattcgttg cgcgccgcct tcaggatgcg cgcccgggtg agatcggcgt cgcgggtcag
     1081 ggccacgggg cggcgtcttt catgtgggcc ctcgcacttt gcaaaccggc gcggccatgt
     1141 tagattgggt tcgtaatgaa gtaaacactt cattcgcttt gcgtgctccg gcgatgcacc
     1201 cgtgcggatc gcgcggcacg cccttttctt ccgggaaggg ttcgctggtg tctgcccgtt
     1261 tcgaacgccc cgcatcgctc gtcgaggcca cccagttgct ggcgggcggc ggctgccgcg
     1321 tgctcgccgg cggcaccgat ctctacccgg cgcacgtcgg ccgcccgctc acccggccgc
     1381 tcgtcgacat caccggcatc gagggcctgc gcggcatccg tcgcaacccg tcgggctggt
     1441 cgatcggcgc cgcgaccacc tggactgacg tgctgcgtgc cgagctgccg ccgcttttcg
     1501 atgcgctgaa gcgggccgcg cgcgaaatcg gcggcgtgca gatccagaac gcaggcacgg
     1561 tcgccggcaa cctctgcaac gcctcgcccg ccgccgacgg cacgccggtg ctcatcgccc
     1621 tcgaggccga ggtcgtgctg cgcagcggcg agggcgaacg gcgcgtcggt gcggccgatt
     1681 tcgtgctcgg cagccgtcgc acggcctgcg cgccgcatga gctggtcgtc gcgatcgaag
     1741 tgccggcgcg cagcgcccgc gcgcgctcgg tcttcctgaa gctcggcggc cggcgctatc
     1801 tgacgatctc ggtgacgatg gtcgccgtcg tgctcgatgc cgacgcggcc ggcgtcgtca
     1861 gccgcgccgc ggtcgcggtc ggcagctgct cggcccgcgc ccggcgcctc ctggcgctcg
     1921 aagccaagct cgtcggcgcg cgtctttcgg ccgatctgcc ggctgccgtc gccgccgccg
     1981 atctggagcc cctgacgccg atcgacgatt tgcgcgccag cgccgcctac cggctcgacg
     2041 ccacggcgac cctgctgcgt cgcgccctcg cggagctcgc gcgatgacgg cccgggacgc
     2101 ccagccggcg caggtggtga gggtccggat caaccaggcc gcgcgcgagc tcgtcgccga
     2161 cccgacgcgc cggctctccg acgggttgcg cgacgacctc ggcctcatcg gcaccaagat
     2221 cggctgccac gccggcgatt gcggcgcctg caccgtgctg ctcgatgacg agcaggtctg
     2281 ctcctgcatc gtcgcgctcg gttcgtgcga gggccgcagc gtcaccaccg tcgaagggct
     2341 ggcgaatgcc gacggcaccc cctcggcgct gcagcaagcc ttcgtcgccc acggcgccgc
     2401 ccaatgcggc gcctgcaccc ccggcatgct gatgagcgcc gaggcgctgc tgcgcgcgaa
     2461 cccgcatccg accgaggccg ag
//
LOCUS       DASVHM010000098         2856 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_873008, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000098 DASVHM010000000
VERSION     DASVHM010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2856
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_873008"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(50..904)
                     /locus_tag="VF308_01915"
     CDS             complement(50..904)
                     /locus_tag="VF308_01915"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7435437.1"
                     /translation="MWKIVRDLLRHNRGFLAGACLLGFVLAIAALSFVSPYSPLDSYV
                     VAPDLPPGWPHLLGTTSRGQDVFWLLSFAIRNTLAFGLLVALISRLLSLAIGLASGYA
                     GGWVDRVLMSINDTFIVIPLFPILVLFYFVMRDKMSWLALAGVMACLGWAYDARLIRS
                     VAMSLRTREFTETAIFSGMSMPRILTEEHLPYVMPIVFATTMNNINWSIGLEVTLSVL
                     GFTDINTPTIGTMIYWANQHTAMVAGIWWWIAFPVLLVVMTFIGLFLLAVSMNEFIDP
                     RSRWGRGT"
     gene            complement(911..1915)
                     /locus_tag="VF308_01920"
     CDS             complement(911..1915)
                     /locus_tag="VF308_01920"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7435438.1"
                     /translation="MSSYAAYALRRVFQFVLVVFIGINISFVVTHATPIDPVEQSIAA
                     VTAFGSTSPEAIGLMRQSLRELYGLQGGLGQQYLSFWKRVAVLDFGPSLSAFPTPVST
                     LIGRALPWTAGLLLVATTLTWVLGNLLGGLAGYFRESRTLRLTGLVVMGLHPIPYYIV
                     ALLLLIVFGYLWPVLPITGGAQMNLARGWNLDFVLSVLQHSILPVLSLVMVGLGGWFM
                     GMRSLVSNIVSEDYVVYAELGGVARGRILGSYVMRNALVPQVTGLALSLGGIFNGAII
                     TEQVFGYPGMGALLIDAVHAGDYSLVLGLTSVSIVTVAFAVLLIDMLYPLLDPRVKVG
                     "
     gene            complement(1946..>2856)
                     /locus_tag="VF308_01925"
     CDS             complement(1946..>2856)
                     /locus_tag="VF308_01925"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435439.1"
                     /translation="KAVSMASYRGAATISAIGIPPTGTHAEYYHRPLEPWLKAFELDT
                     GKRKIKPYDPTIGKQIADSLRPSLGVQIPEKAEDVAKAFGMGWWKPDPQAATELLQKA
                     GFSKRGDQWFTPEGKPFSIRITVEGEGRPVMTRAGSMVAQQWRQFGIDASTVVAQGTL
                     ADRRAAGDFEALISWSVETWGGHPDLSYFLDSWHSQFVADPGKPQPARNWQRWKNPEL
                     DRIIEQIRTIGFDDPKGVELGREYVKLVAREMPSIPLMSYNVFTVMDETYWTGYPNAL
                     TAPYTDPVPNWGNTKYMMVKLKPRRQ"
BASE COUNT          524 a          920 c          990 g          422 t
ORIGIN      
        1 taggcgcgca agcccgcgac ctggaccacc ggcgctcgaa gcggggtcgt cacgtgccgc
       61 gcccccatcg actgcgcgga tcgatgaatt cgttcatcga cacggcgagc aggaacaggc
      121 cgatgaaggt catcacgacg agcaggaccg gaaacgcgat ccaccaccag atgccggcga
      181 ccatcgccgt gtgctggttg gcccagtaga tcatcgtgcc gatggtcggc gtgttgatgt
      241 cggtgaagcc gaggaccgac agggtgacct cgaggccgat cgaccagttg atgttgttca
      301 tcgtcgtcgc gaagacgatc ggcatcacgt agggcaagtg ctcctcggtc aggatgcgcg
      361 gcatgctcat gcccgagaag atggcggtct cggtgaactc gcgcgtgcgc aggctcatcg
      421 ccaccgagcg gatcaggcgc gcgtcgtagg cccagcccag acaggccatc acgccggcga
      481 gcgcgagcca cgacatcttg tcgcgcatga cgaagtagaa gaggacgagg atcggaaaca
      541 gcgggatgac gatgaaggtg tcgttgatcg acatcagcac ccggtcgacc cagccgccgg
      601 cgtagcccga cgccagcccg atcgcgagcg agagcaggcg gctgatgagc gccaccagca
      661 acccgaaggc gagcgtgttg cggatcgcga agctgagcag ccagaacacg tcctgcccgc
      721 gcgaggtcgt gccgagtagg tgcggccagc cgggcggcag gtcgggcgcg acgacgtagc
      781 tgtcgagcgg cgagtacggc gagacgaagg agagggcggc gatcgccagc acgaagccga
      841 gcaggcacgc cccggcgaga aagccgcggt tgtggcgcaa caggtcgcga acgatcttcc
      901 acatgacgcg tcagccgacc ttcacgcgcg ggtcgagcag gggatagagc atgtcgatca
      961 acagcacggc gaaagccacc gtgacgatcg agaccgaggt caggccgagc acgaggctgt
     1021 agtcgccggc gtgcacggcg tcgatcagca acgcgcccat gccgggatag ccgaagacct
     1081 gctcggtgat gatcgcgccg ttgaagatgc cgcccagcga caaggccagc cccgtgacct
     1141 gcggcaccag cgcgttcctc atcacgtacg agccgaggat gcgcccgcgc gcgacgccgc
     1201 cgagctcggc gtagaccacg tagtcctcgc tgacgatgtt cgagaccagc gaacgcatcc
     1261 ccatgaacca gccgccgagg ccgaccatga cgagcgagag caccggcagg atcgagtgct
     1321 gcagcacgct cagcacgaag tcgaggttcc agccgcgcgc caggttcatc tgcgcgccgc
     1381 cggtgatcgg cagcaccggc cagaggtagc cgaagacgat cagcaacagc aaggcgacga
     1441 tgtagtacgg gatcggatgc agccccatca cgaccagacc ggtgaggcgc agcgtgcggc
     1501 tctcgcggaa atagccggcc aggccgccga gcaggttgcc gagcacccag gtcagcgtcg
     1561 tcgcgacgag cagcagccct gcggtccacg gcagcgctcg gccgatcagc gtcgacactg
     1621 gcgttggaaa cgccgacagc gagggcccga agtcgagcac cgccacgcgc ttccagaagc
     1681 tcaggtactg ctgcccgagc ccgccctgca ggccgtagag ctcgcgcagc gactggcgca
     1741 tcaggccgat cgcttccggg ctggtactgc cgaacgccgt gacggcggcg atgctctgct
     1801 cgaccgggtc gatcggcgtc gcgtgcgtga cgacgaacga gatgttgatg ccgatgaaca
     1861 ccaccagaac gaactggaaa acgcggcgca gcgcgtacgc cgcgtagctc gacatcgccg
     1921 ggcaagccgt tgcgctgcga cggcgctact gccgtcgcgg cttgagcttg accatcatgt
     1981 acttggtgtt gccccagttc ggcaccgggt cggtgtaggg cgcggtcaag gcattgggat
     2041 agccagtcca gtaggtttcg tccatgaccg tgaagacgtt gtacgacatc agcgggatgc
     2101 tcggcatctc ccgcgccacc agcttgacgt actcgcgccc gagctcgacg cccttgggat
     2161 cgtcgaagcc gatggtgcgg atctgctcga tgatcctgtc gagctcgggg ttcttccagc
     2221 gctgccagtt tcgcgccggc tgcggcttgc cgggatcggc cacgaactgc gagtgccagc
     2281 tgtcgaggaa gtacgagagg tcggggtggc cgccccaggt ctccacgctc cagctgatga
     2341 gggcctcgaa gtcgccggcg gcgcggcggt cggcgagcgt gccctgcgcg acgacggtgc
     2401 tcgcgtcgat gccgaactgg cgccattgct gcgccaccat cgagccggcg cgggtcatga
     2461 ccggccggcc ctcgccctcg accgtgatcc tgatcgagaa cggcttgccc tcgggcgtga
     2521 accactgatc gccgcgcttg ctgaagccgg ccttctgtag cagctcggtg gcggcttgcg
     2581 gatcgggctt ccaccagccc atgccgaagg ccttggcgac gtcttcggcc ttttcgggaa
     2641 tctgcacgcc caggctcggc cgaagcgagt cggcgatctg cttgccgatc gtcgggtcgt
     2701 acggcttgat cttgcgcttg ccggtgtcga gctcgaaggc tttgagccag ggctcgagcg
     2761 ggcggtggta gtactcggcg tgcgtgccgg tgggcgggat gccgatcgcc gagatggtcg
     2821 ccgcgccgcg atacgaggcc atcgacaccg ccttga
//
LOCUS       DASVHM010000099         3711 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_151603, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000099 DASVHM010000000
VERSION     DASVHM010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3711
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151603"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            45..521
                     /gene="bfr"
                     /locus_tag="VF308_01930"
     CDS             45..521
                     /gene="bfr"
                     /locus_tag="VF308_01930"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HEX7435440.1"
                     /translation="MKSDPQVIQHLNAQLKNELTATNQYFLHYRMLKHWALDKLAKKE
                     YAESLGEMKHADKLMERIFVLEGLPNLQDLGKLLIGENVPEVLHCDLQSETGAQATIK
                     DGIAYCESVRDYVSRDLLQGILDDTEAHIDFLETQIGLLGKVGLENYLQSQIGDAS"
     gene            543..767
                     /locus_tag="VF308_01935"
     CDS             543..767
                     /locus_tag="VF308_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX7435441.1"
                     /translation="MIVCVCRRVSDQQIHEAAAEGAHSLECLQIDLGVAMQCGRCADC
                     ASRVLCDAREARAAQRHAIAFSGPMQAQMA"
     gene            862..2157
                     /gene="serS"
                     /locus_tag="VF308_01940"
     CDS             862..2157
                     /gene="serS"
                     /locus_tag="VF308_01940"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEX7435442.1"
                     /translation="MLDIALLRKDLAQVIARLERRKAPQPFLDVERFTALEAERKTLQ
                     TRTEDLQARRNALSKQIGQRKAQGQDTAETMADVGRVGDELKSSAERLETLQTELSAL
                     LMGVPNLPDASVPVGPDETANVEVRRWGTPPRFDFAPKDHVDLGTPLGLDLDTGAKLS
                     GSRFSFLRGPIARLHRALAQFMLDVQTTEHGYVECYTPYIVNREVLEGTGQLPKFKED
                     MFWVSRGGDEAQAEQYLISTSEISLTNSVREQVLAADALPLRLTAHTPCFRSEAGSAG
                     RDTRGMIRQHQFDKVEMVQIVHPERSAAALGEMVGHAEAVLQKLGLAYRVMLLSSGDM
                     GFGAAKTYDLEVWVPAQDTYREISSVSNCEAFQARRMQTRFKNAQGRNEFVHTLNGSG
                     LAVGRALVAVLENGQNADGSVTVPAALQPYMGGLAVLRA"
     gene            2154..2960
                     /locus_tag="VF308_01945"
     CDS             2154..2960
                     /locus_tag="VF308_01945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013901034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydratase"
                     /protein_id="HEX7435443.1"
                     /translation="MSRAELAAELLAAYDGATRLPLLTARPGGLNLVEAHALADEIRS
                     RRIGRGERPLGYKIGFTNRGIWSTYGVHAPIWAPVWDSTVAQIEGTEHAVSLAGLVQP
                     RLEPEIMFGLAQTPSAGMSAADLAGCIEWVAHGFEIVHTHFDDWRFEAPDTVADFALH
                     GRLMVGPRVPIARFAEPRRELAAVRLALRKNGLQVDEGEGRAVLDGPLDALRVWVDAM
                     HAQVPRWPIRPGDIVTTGTLTDAWPLAPGEGWQTVLDDARLPGLVLRIED"
     gene            3028..3118
                     /locus_tag="VF308_01950"
     tRNA            3028..3118
                     /locus_tag="VF308_01950"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3062..3064,aa:Ser,seq:cga)
     gene            3255..>3711
                     /locus_tag="VF308_01955"
     CDS             3255..>3711
                     /locus_tag="VF308_01955"
                     /inference="COORDINATES: protein motif:HMM:NF024750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Arm DNA-binding domain-containing protein"
                     /protein_id="HEX7435444.1"
                     /translation="MRENVVSQTGVGKMALHRLKVVAVHKARDGDLTDGGGLCIKVVN
                     GTARAAFRFTAPDGRRREAGLGVLNRSSLAGTGDSLVWARELAEKARRLLAEGVDPIE
                     QKKADRDSAKAETDAKRQKKKAESMTLARAARLYHERDVEPSTKLTERHK"
BASE COUNT          678 a         1219 c         1243 g          571 t
ORIGIN      
        1 cgtctgatgc cgagcgatgt ccaccaatca ggcagccgaa gtccatgaag agcgatccgc
       61 aagtcatcca gcatctgaat gcgcagctga agaacgagtt gacggcgacg aaccagtact
      121 ttctgcacta ccgcatgctc aagcactggg ccttagacaa gttggcgaag aaggaatacg
      181 cagagtcgct cggtgagatg aagcacgccg acaagctgat ggagcgaatc ttcgtgctcg
      241 agggcctgcc gaatctgcag gacctcggca agctcctgat cggcgaaaac gtgcccgagg
      301 tgctgcactg cgacctgcaa tccgagaccg gcgcgcaggc gaccatcaag gacggcatcg
      361 cctattgcga atcggtgcgc gactacgtgt cgcgcgattt gctgcaaggc attctggatg
      421 acaccgaagc gcacatcgat ttcctcgaga cccagatcgg actcctcggc aaggtcggcc
      481 tggagaacta tctgcagtcg cagatcggcg acgcgagcta gggccgcaga gagggcaagg
      541 tcatgatcgt ttgcgtgtgc cgcagggtgt ccgaccagca gattcacgag gcggcggcgg
      601 agggcgcgca cagcctcgag tgtctccaga tcgatctggg cgtggccatg caatgcggcc
      661 gttgcgccga ctgcgcttcg cgcgtgttgt gcgatgcgcg cgaggcgcgc gccgcgcaga
      721 ggcacgcgat cgcattcagc ggcccgatgc aggcgcagat ggcgtagccg ggaacgcgag
      781 ccgcccgcag cggcggcgtg acggcactgc ctacaatcca cgctccctgt ctgacgggcc
      841 gcgccgcgcg cggccagcac catgctcgac atcgctttgc tgcgcaagga tctggcgcag
      901 gtcatcgccc ggttggaaag gcgcaaggcg ccgcagccgt tcctcgacgt cgagcgtttc
      961 actgcgctcg aggccgagcg caagacgctg cagacccgca ccgaggacct gcaggcccgg
     1021 cgcaacgcgc tctcgaaaca gatcggccag cgcaaggcgc aagggcagga cacggccgag
     1081 acgatggccg acgtgggccg cgtcggcgac gaactgaagt cttcggccga gcgcctcgag
     1141 acactccaga cggagctgtc ggcgctgctc atgggcgtgc cgaatctgcc cgacgcgagc
     1201 gttccggtgg gccccgacga gaccgcgaat gtcgaggtcc ggcgctgggg cacgccgccg
     1261 cgcttcgact tcgcaccgaa agaccatgtc gatctcggca caccgctcgg cctcgacctc
     1321 gataccgggg ccaagctctc gggttcgcgc ttcagttttc tgcgcgggcc gatcgcgcga
     1381 ttgcatcggg cgctcgccca gttcatgctc gacgtgcaga ccacagagca cggctacgtc
     1441 gagtgctaca cgccctacat cgtgaaccgc gaagtgctcg agggcaccgg ccagctgccc
     1501 aagttcaagg aagacatgtt ctgggtcagc cgcggcggcg acgaggccca ggccgagcag
     1561 tatctgatct cgacttccga gatctcgctg accaactcgg tgcgcgaaca ggtgctcgcc
     1621 gccgacgcgc tgccgctgcg cctcaccgcg cacacgccct gttttcgcag cgaagccggc
     1681 agcgccggcc gcgacacgcg cggcatgatc cgccagcacc agttcgacaa ggtcgagatg
     1741 gtccagatcg ttcaccctga gcgcagcgcc gcggcactcg gggagatggt cggccacgcc
     1801 gaagcagtct tgcaaaagct cggtctcgcg tatcgcgtga tgctgctgag cagcggcgac
     1861 atgggcttcg gcgcggcgaa gacctacgac ctcgaggtgt gggtgccggc gcaggacact
     1921 tatcgcgaaa tcagctcggt gtcgaactgc gaagccttcc aggcccggcg catgcagacc
     1981 cgcttcaaga atgcccaggg ccggaacgaa ttcgtccata cgctgaacgg gtcgggcctc
     2041 gcggtcgggc gcgcactggt cgccgtgctc gagaacggcc agaacgccga tgggtcggtc
     2101 actgttccgg cggcattgca gccctacatg ggcgggctcg ccgtcctccg tgcatgagcc
     2161 gcgccgagct cgccgctgaa ctgctggcgg cctacgacgg agcgacccgg ctgccgctgc
     2221 tcaccgcgcg tcccggtggc ttgaatctcg tcgaagccca tgccctggcc gacgagatcc
     2281 gcagtcgccg catcgggcgc ggcgagcgtc cgctcggcta caagatcggc ttcacgaacc
     2341 gtggcatctg gtccacgtac ggcgtgcatg cgccgatctg ggctccggtc tgggacagca
     2401 ccgtcgccca gatcgaaggc accgaacacg ccgtctcgct ggccggactc gtccagccgc
     2461 gcctcgagcc ggagatcatg ttcggcctgg cgcagacgcc gagcgcgggc atgagcgcgg
     2521 ccgatctcgc cggctgcatc gaatgggtcg cgcacggctt cgagatcgtc cacacgcact
     2581 tcgacgactg gcgtttcgag gcgcccgaca ccgtggccga ttttgcgctg catggccggc
     2641 tcatggtcgg cccgcgcgtc ccgatcgcgc gtttcgcaga gccgcggcgc gagctcgcgg
     2701 cggtgcgcct cgcgctgcgg aagaacgggc ttcaggtcga cgaaggcgag ggtcgcgcgg
     2761 tgctcgacgg accgctcgac gcgctgcgcg tctgggtcga cgcgatgcac gcgcaagtgc
     2821 cgcgttggcc gattcggccc ggcgacatcg tcaccaccgg cacgctgacc gacgcctggc
     2881 cgctcgcacc cggcgagggc tggcagaccg tgctcgacga cgcccgcctg cccggactcg
     2941 tgctgcgcat cgaggactga acggcactct tgccgcggtt tagaattcaa ggctcggcgt
     3001 tgacccgccg accctgcaga caaggcggga gaggtggcag agtggtcgaa tgcgccggac
     3061 tcgaaatccg gttcacggtt atgccgtgac gtgggttcga atcccaccct ctccaccagt
     3121 gacactcccg catagcagtg catcgcagtg cggcctagtg cagctaagtc attgatttga
     3181 cagagttttc ccagtcccta gacttcgctg tgacgcactc ttagtgccgc gctgtggatg
     3241 cctagtgcac gcccatgcgc gaaaatgtgg tgagtcaaac gggggttgga aaaatggctt
     3301 tgcatcgact gaaggtcgtc gccgtccaca aggcgagaga tggagacttg accgacggcg
     3361 gcggcctctg catcaaggtc gtcaacggaa ccgcccgcgc agccttccgt ttcacagcgc
     3421 cggacggacg ccgccgcgag gcggggctcg gcgtgctgaa tcgaagcagc ttggccggca
     3481 cgggcgacag cctcgtgtgg gcgcgagagc tcgccgagaa ggcgcggcga ctgctcgccg
     3541 agggcgtcga tccaatcgaa cagaagaaag ccgatcgcga cagcgcgaag gccgagaccg
     3601 acgcgaagcg acagaagaag aaggccgagt caatgaccct ggcgcgcgcg gctcgcctct
     3661 atcacgagcg tgacgtagag ccgtcgacga agctaacaga gaggcacaag c
//
LOCUS       DASVHM010000100         2577 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_512238, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000100 DASVHM010000000
VERSION     DASVHM010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512238"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(394..>2577)
                     /locus_tag="VF308_01960"
     CDS             complement(394..>2577)
                     /locus_tag="VF308_01960"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX7435445.1"
                     /translation="QVAPVEPAPAPATPPVAAPAPATLDKVEITGGRPDDVQERRNST
                     AAKIIIGRDEIERFGDSTLGDVLKRLPGVTIQGRPGRGGAIRMRGLGSGYTQILLDGE
                     RIPPGFSLDSLAPEQIERIEIIRAPTAETGARAIAGTINIITRGGYTRRINDVRIGTG
                     IENGRLQPGVSWTRNDTAGPFIYNYSLSAFRQNRASDSTTTTVDQDLNGGVVTLDQRD
                     TGTVREHRQGLHASGRLQWRGEEEGHSLVLMPLLIYGNGTSHRTGVLEQAVGATPAPY
                     DHSVTDGDGSYSLVRLNAQWNRRVGEGARLEARAGIGLSRSVGRSLRVEQTASVLSRT
                     LEDSTDTHDRSLSASAKLIALIAAEHSLVAGVETEGNRRSDTHTTLQDGAPLLVDFGD
                     NVSASASRFALYAQDEWALSRNWAAHAGLRWEGIATRGSGEAGQAEASNRSSVWSPLL
                     HAVWKPDPNSRDQVRISLTRSYRSPTLGNLIARPSINTRYPVPGANTPTQPDRAGNPN
                     LRPELATGIDIAIERYLPGSGILSANLFSRQISNFMRSQTTLENVPWATQPRFVARPQ
                     NIGDAQTQGLELEAKFRLSDLVADAPKLDLRANASFFQSRVKEVPAPDNRLDQQPDYT
                     VNLGADYRFVGVPLTLGGNLNWTPGYTTRVSDVQTAQQGRKLVADAYALWTFSPTLQL
                     RVSASNLNPRDYVTGGTFDDAGVRETSTSTAPTYLNLQIRLELKL"
BASE COUNT          361 a          834 c          943 g          439 t
ORIGIN      
        1 gggatcgatg gcttcaagag gtatgtcgcg ctggccgtcg tcgcgcgcaa cgtgcaacgt
       61 ctcggcgctc tgctgcgaca acaagaggcc gagcgaatca agcgcggtcc ctacaagaag
      121 gcagcctgac tacggcgaat ccgcttcacc tgctcctgca actgcgagag cagggaacga
      181 ggccgtctga agagcaccca aaccgccgac ctcgccctgt tcaacgacgc cggcatcgaa
      241 aaggcctcca cagcttgaca gccacggggg taaaaagcat gccgactcgg ctgcagctat
      301 tccaaaacta gggtttccgg tctggcacta gctagaagca gttgggcggc acgtcaagca
      361 ctatcgctgt cgccgaccgc tgtcagaggg ctctcagagc ttgagctcga ggcggatctg
      421 caagttgagg taggtcggcg cggtgctggt cgaggtctcg cgcaccccgg cgtcgtcgaa
      481 ggtgccgcca gtgacgtagt cacgcgggtt caggttgctc gcgctgacgc gcagctgcag
      541 cgtcgggctg aaggtccaga gcgcataggc gtcggcgacg agcttcctgc cctgctgcgc
      601 cgtctgcacg tcgctcaccc gcgtcgtgta gccaggggtc cagttcaggt tgccgccgag
      661 cgtgagcggc acgccgacga agcggtagtc ggcgccgagg ttgacggtgt agtcgggctg
      721 ctggtcgagc cggttgtcgg gagcgggaac ctcctttacg cgcgactgga agaagctcgc
      781 gttcgcacgc aggtcgagct tcggcgcgtc ggcgacgagg tcactgaggc gaaacttcgc
      841 ctcgagctcg agcccctgcg tctgcgcgtc gccgatgttc tgcggccgcg ccacaaagcg
      901 cggctgggtc gcccacggca cgttttcgag cgtggtctgg ctgcgcatga aattgctgat
      961 ctggcgggaa aagaggttcg cgctgaggat gccgctgccc ggcagatagc gctcgatggc
     1021 gatgtcgatg ccggtcgcga gttcgggcct gaggttcggg ttgccggcgc ggtccggctg
     1081 ggtcggcgtg ttcgcgccgg gtaccggata gcgcgtgttg atgctcgggc gcgcgatcag
     1141 gttgccgagc gtgggcgagc ggtagctgcg cgtcaggctg atgcggacct ggtcgcggct
     1201 gttcgggtcc ggcttccaga ccgcgtgcag caacggcgac cagacgctgc tgcggttgct
     1261 ggcctcggcc tgcccggcct cgccgctacc gcgcgtggcg atgccttccc agcgcagccc
     1321 ggcgtgcgcc gcccagttcc gggaaagggc ccactcgtcc tgcgcgtaca gcgcgaagcg
     1381 gctggccgac gccgacacgt tatcgccgaa gtcgacgagc agcggcgcac cgtcctgcaa
     1441 ggtcgtgtgg gtgtcgctgc gccggttgcc ctcggtctcg acgccggcca cgaggctgtg
     1501 ctcggccgcg atcagcgcga tcagcttggc gctcgcgctc aagctgcggt cgtgcgtgtc
     1561 ggtgctgtcc tcgagcgtgc gcgagaggac gctggcagtc tgctcgacac gcaggctgcg
     1621 gccgaccgaa cgcgagaggc cgatgccggc gcgcgcctcg agccgcgcgc cctcgccgac
     1681 cctgcggttc cactgggcat tgaggcggac gagcgaatag ctgccgtcgc cgtcggtcac
     1741 gctgtggtcg tagggcgccg gcgtcgcgcc gaccgcctgc tcgagcacgc cggttcgatg
     1801 cgaggttccg ttgccgtaga tcagcaaggg catcagcacc aggctgtggc cttcctcctc
     1861 gccgcgccac tgcaggcggc cggacgcgtg caggccctgg cgatgctcgc gcacggtgcc
     1921 ggtgtcgcgc tggtcgagcg tgacgacgcc gccgttcagg tcctggtcga ccgtggtcgt
     1981 cgtgctgtcg ctcgcccggt tctgccggaa cgccgagagc gaatagttgt agatgaacgg
     2041 gcccgccgtg tcgttgcgcg tccatgacac gccgggctgc aggcgcccgt tctcgatgcc
     2101 ggtgccgatg cgcacatcgt tgatgcgtcg ggtgtagccg ccgcgcgtga tgatgttgat
     2161 cgtgccggcg atcgcgcgcg cgccggtctc ggcggtcggc gcgcggatga tctcgatgcg
     2221 ctcgatctgt tcgggcgcga gcgaatcgag cgagaagccc ggcgggatgc gttcgccgtc
     2281 gaggaggatc tgggtatagc cgctgcccag cccgcgcatc cggatcgcgc cgccgcggcc
     2341 gggccggccc tggatcgtca cgcccggcag gcgcttgagc acatcgccga gcgtgctgtc
     2401 gccgaagcgc tcgatctcgt cgcggccgat gatgatcttc gcggcggtcg agttgcggcg
     2461 ttcctggaca tcgtcgggcc gaccgccggt gatctcgacc ttgtcgagcg tggcgggcgc
     2521 gggcgcagct acgggcggcg tcgcgggagc gggcgccggc tcgacaggtg caacctg
//
LOCUS       DASVHM010000101         3716 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_945374, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000101 DASVHM010000000
VERSION     DASVHM010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3716
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_945374"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..575
                     /locus_tag="VF308_01965"
     CDS             <1..575
                     /locus_tag="VF308_01965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435446.1"
                     /translation="SGQSGIEHAKAFKYRRWFQPAGSPGDDTVEVPFAALTHLFCWDN
                     RAPVADIERLVMNSTASNEECQFLQGPGDSTFAIEYRAYVAEERFQYGHGISWIRGLN
                     HSASNGGEGVLATPLSPANVGKPPSPPVNSGSNAFSLMLARPDLVPPEVLQRCSFAVT
                     LTTYAKTTNGSNLGYSWYDQETAAFALEID"
     gene            609..1013
                     /locus_tag="VF308_01970"
     CDS             609..1013
                     /locus_tag="VF308_01970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435447.1"
                     /translation="MSADVDFWPRLVLAILVTWRVTHLLVREDGPAATLARLRATLGP
                     GAWSGMFACFYCMSLWVAAPLSLWVATRPLDAWMVWLALSGAACLCERIGQPEVVVQP
                     LPETNLGEDDGMLRTQAEPAAGRTGGGAAPGA"
     gene            1018..1212
                     /locus_tag="VF308_01975"
     CDS             1018..1212
                     /locus_tag="VF308_01975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435448.1"
                     /translation="MGHRLAEATAGGRGVTLRYRDRSRILVRGPVTGRAYEFSPRQPT
                     PSVDMRDADVLMRTGRFLRA"
     gene            complement(1414..2643)
                     /locus_tag="VF308_01980"
     CDS             complement(1414..2643)
                     /locus_tag="VF308_01980"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7435449.1"
                     /translation="MIAAQRRVGLYLAVVQFFFALTWTVYVIFLPQLAAQAGIAKAAV
                     IWILMLDQLIFVFSDYAMGVAADRSARIVGRVGNMVLLVTLLSCAAFVALPLVAPQHS
                     AGAFIVLVALWAASSSALRAPPLALVGRHASLPSQPWLVALSLFGIGLANALAPYLGV
                     TLRGVDPRLPFIVSSVALAAVTLGIVAAERALARSSASPAAPGPAAPAVSASTARLAT
                     APALAIFIVAAVLVSVAFQGHVFLNTSPLYLKFAQPADLQYLVPVFWVGFNLLLMPAG
                     ALTRRAGGWRVMAIGALVAAAAAVMTVEATSLRILVTMQFVAGGAWACVLMSAFSTAL
                     AIGRTGREGTTSGALSSVLALGALVRMAAIAAALRNDAAWQPVLTWLPAIAWIGGGAL
                     LLATWRARKGRRPTSSD"
     gene            2812..>3716
                     /locus_tag="VF308_01985"
     CDS             2812..>3716
                     /locus_tag="VF308_01985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005434087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7435450.1"
                     /translation="MSLKHLTTAALTMASLGLATTAQAGKTLDAVKARGQVVCGVNTS
                     GPGFSSADSQGKWSGLDVDFCRAVAAAVLKDADKVKYVPLNSQQRFASLQAGEIDVLS
                     RNSTWTLSRDASLGVVFTGINYFDGQGFMVPKKLKIDNINKLNGATLCVQAGTTSEKN
                     VADYFGAHSMKYKSVVFDTAEAITSAFFAGRCQVYTTDMSDLAGARTKAPKADDYVIL
                     PQVISKEPLGASVRRGDDEWFEIVRWTQFALLEAEENGLSQANVDQQKSTNKDPGVQR
                     FLGVSEDMGKLIGLDDEWAYRIVKQV"
BASE COUNT          664 a         1288 c         1258 g          506 t
ORIGIN      
        1 catccggcca gtcgggaatc gagcacgcca aggctttcaa gtaccggcgc tggttccagc
       61 ccgccggcag ccctggcgac gacaccgtcg aagtgccgtt cgccgcgctg acacacttgt
      121 tctgctggga caaccgcgcc ccggtcgccg acatcgagcg gctggtgatg aacagcacgg
      181 cgtcgaacga ggaatgccag ttcctgcaag gtccgggcga ctcgaccttc gccatcgagt
      241 accgcgccta cgtggccgag gagcgcttcc agtacggcca cggtatcagc tggatccgcg
      301 gcctgaacca ctcggccagc aacggcggcg agggcgtgct ggcgacgccg ctaagcccgg
      361 ccaacgtcgg caagccgccg tcgccgccgg tcaacagcgg cagcaacgcg ttctcgctca
      421 tgctggcccg gcccgatctc gtcccgcccg aggtgctgca gcgctgctcg ttcgcggtca
      481 cgctgacgac atacgccaag accaccaatg gctccaacct gggctactcc tggtacgacc
      541 aagagacggc ggcgttcgcg ctcgagatcg actgagatga gcggtgacaa aacggagtcg
      601 atggcgagat gagcgccgac gtcgacttct ggccgcgcct ggtcctggcg atcctcgtga
      661 cctggcgcgt cacccacctg ctcgtgcgcg aggacgggcc ggccgcgacg ctcgcccgcc
      721 tccgcgcgac gctggggccg ggcgcatgga gcgggatgtt cgcctgcttc tactgcatga
      781 gcctgtgggt ggcggcgccg ctctcgctgt gggtggcaac gcggccgctc gacgcctgga
      841 tggtctggct ggcgctctcg ggggcggcat gtctgtgcga gcgcatcggc cagccggagg
      901 tggtcgtgca accgttgccc gaaacgaacc tgggagaaga cgatgggatg ttgcggactc
      961 aggcggagcc cgctgccggc cgcactggcg gcggcgccgc gcccggcgcc tgacgccgtg
     1021 ggccatcgcc tcgcggaggc gacggccggc ggccgcggcg tgacgctgcg ataccgcgac
     1081 cggtcgcgga tcctcgtgcg cggccccgtg accggccgcg cctacgagtt ctcgccgcgg
     1141 cagccaacgc catctgtcga catgcgcgac gccgacgtgc tgatgcgaac cggccgcttc
     1201 ctgcgggcct gagcgtcgcc gaagctcaga gcaggacgaa gcggccggcg gcacgcacac
     1261 cggggccctc gtgacaactg cgcaacttcg tctgcacaga catagttcgc gcgcgtgttc
     1321 ttacggttca gaacgaggtt cgcctgcttc aagagcagcc cgacatcgcc ctggcctaga
     1381 agcccggcat cgcgcgaccg ctacgtgcac cactcaatcg ctcgatgtcg gccgccggcc
     1441 ctttctcgct cgccaagtcg ccagcagcaa cgcgccgccg ccgatccagg cgatggccgg
     1501 cagccacgtg aggaccggtt gccacgccgc gtcgttgcgc aacgcggcag cgatcgcagc
     1561 catgcggacc agcgcgccga gcgcgagcac cgacgacagc gcgccgctcg tcgtcccttc
     1621 gcggccggta cggccgatcg ccagcgcggt cgagaaggcg ctcatcagca cgcaggccca
     1681 tgcgccgccg gcgacgaact gcatcgtcac gaggatccgc aagctcgttg cttcgaccgt
     1741 catcaccgcc gctgcggcag cgaccagcgc gccgatggcc atcacgcgcc agcctccggc
     1801 gcgccgggtc agcgcgcccg ccggcatcaa cagcaggttg aagccgaccc agaacaccgg
     1861 caccaggtac tgcaggtcgg ccggttgcgc gaatttgagg tagagcggcg acgtgttcag
     1921 gaacacatgg ccctggaaag cgacgctgac gaggaccgcc gcgacgatga agatcgcgag
     1981 cgccggggcc gtggcaagcc tggcggtcga cgcagaaacc gccggcgccg ccggcccggg
     2041 ggcagccggc gatgcgctcg atcgcgcgag tgcgcgctcg gcggcgacga taccaagcgt
     2101 caccgcggcg agcgcgacgc tcgagacgat gaacggcagc cgcgggtcga caccgcgcaa
     2161 cgtaacgccg aggtaaggcg cgagcgcgtt cgcgaggccg atgccgaaca acgacagcgc
     2221 gaccagccat ggctgcgacg gcagcgacgc gtgccgcccg acaagggcga gcggcggcgc
     2281 tcgcagcgcc gacgagctcg ccgcccacag cgcgacgagc acgatgaacg cgccggccga
     2341 gtgttgcggc gcgaccagcg gcaacgcgac gaacgccgcg cacgacagca gcgtgacaag
     2401 cagcaccatg ttgccgacgc ggccgacaat tcgcgcgctg cgatcggcgg cgacgcccat
     2461 cgcgtagtcc gagaagacga agatcagctg gtcgagcatc aggatccaga tcaccgccgc
     2521 tttggcgatg ccggcctgcg ctgcgagctg cggcaggaag atcacgtaga ccgtccacgt
     2581 cagcgcgaag aaaaactgga cgaccgcgag gtagagaccg acgcggcgct gggcagcaat
     2641 cattcggtgt ccgggctgct gcaccgctgc gtacgcgcat ccggcagcat cgacgggtca
     2701 gtgatcgagg gccagcgatt gtcgcgcggg acgagcgccc cgcgctgaga cgaaccctgc
     2761 agcgcgaggg tggctaaact gacggcccta taagcagacg cggagacttc gatgtcactc
     2821 aagcacttga ccacggcggc gctcacgatg gccagcctcg ggctcgcgac gaccgctcag
     2881 gcaggcaaga cgctggacgc ggtgaaggca cgcggccagg tcgtctgcgg cgtcaacacc
     2941 tcgggcccgg gcttttcgtc ggcggacagc cagggcaagt ggtccggcct cgacgtcgac
     3001 ttctgtcgag ccgtcgccgc ggccgtgctc aaggacgccg acaaggtcaa gtacgtgccg
     3061 ctcaattcgc aacagcgttt cgcctcgctt caggccggcg agatcgacgt gctgtcgcgc
     3121 aacagcacct ggacgctgtc gcgcgatgcg tccctcggcg tggtcttcac cggcatcaac
     3181 tacttcgacg gccagggttt catggtgccg aagaagctga agatcgacaa catcaacaag
     3241 ctcaatggcg cgaccctgtg cgtgcaagcc ggcaccacca gcgagaagaa cgtggccgat
     3301 tatttcggcg ctcacagcat gaagtacaag tcggtcgtgt tcgataccgc cgaggcgatc
     3361 acgagcgcat tcttcgccgg ccgctgccaa gtctacacca ccgacatgag cgatctcgcc
     3421 ggcgcccgca cgaaggcgcc gaaggccgac gactacgtca tcctgccgca ggtgatctcc
     3481 aaggagccgc tcggcgcatc ggttcgccgc ggcgacgacg agtggttcga gatcgttcgc
     3541 tggacccagt tcgcgctact cgaggccgaa gagaacggcc tgtcgcaggc caacgtcgac
     3601 cagcagaagt cgaccaacaa ggaccccggc gtgcagcgct tcctgggcgt ctccgaagac
     3661 atgggcaagc tcatcggcct cgatgacgag tgggcctatc gcatcgtcaa gcaggt
//
LOCUS       DASVHM010000102         2818 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_799678, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000102 DASVHM010000000
VERSION     DASVHM010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2818
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_799678"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1515
                     /locus_tag="VF308_01990"
     CDS             <1..1515
                     /locus_tag="VF308_01990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013799987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016405 - CoA-ligase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoate-CoA ligase family protein"
                     /protein_id="HEX7435451.1"
                     /translation="AHLLAINAGRAGKIAYIDDSAPLTYGELDERVRRCAAGLLGLGL
                     RREDRVLMAMHDSVEFPIAFLGALYAGIVPVPVNTLLTADDYAYMLEHSRARAVLVSR
                     ALWPAVAKAVASVRRMGPALPVVTSGPGAAPPDTLLFAHLLEAPALSEPADTLADDFA
                     FWLYSSGSTGRPKGAVHTHANLFWSAALYGTPVLGLRESDVCFSAAKLFFAYGLGNAL
                     TFPLSVGATTVLMAERPTPTAVFKRWTEHGVTVFFGAPTGYAGMLAAPDLPARSQVKL
                     RLCSSAGEALPREIGERFTAHFGCEIVDGLGSTEMLHIFLSNRPGDVNYGSTGRAVPG
                     YRLRLVGESGADAAPGEIGDLLVSGPTSALMYWAQRDKSRATFQGEWTKTGDKYSIDA
                     RGCYVYAGRSDDMLKVSGVYVSPFEVEATLMQHPAVLECAVFGKIDADGLTKTKACVV
                     CKPGQSVDEPELKAFVKERLAPYKYPRFIEFIDELPKTATGKIQRFKLRERERP"
     gene            1521..2306
                     /locus_tag="VF308_01995"
     CDS             1521..2306
                     /locus_tag="VF308_01995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007860066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7435452.1"
                     /translation="MPPSGTARIDWRGRPIDLEYQWLGDAMSTRPVVVFLHEGLGSVS
                     MWRDFPARFCREHGLRGLVVSRYGYGRSTPKPADEAWPADFMHAQAREVLPALFAALG
                     IERPWLFGHSDGASIALLYASAHPVAGLVVVAPHIFVEEISVASIEKARATYASTDLR
                     DRLARHHDDPDSAFRGWNDAWLSPEFRDWNIEAALATIDCPILAIQGEDDEYGTLEQV
                     RGIARRLPGRTRVLEIAHCGHSPHREQPDLLMREAGLFIVSNS"
     gene            2309..>2818
                     /locus_tag="VF308_02000"
     CDS             2309..>2818
                     /locus_tag="VF308_02000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435453.1"
                     /translation="MTSHIPLVEDDHVIGLDGKPLAPLPVNAWSGLPFEIHPHMRQGE
                     VAHRYNPHPLLLVRVGSHGRSRIRSGHAVFDLRLEPGQVDVFSAGFRMDHGWWDCTPG
                     EVLAIDIDPERARTYLHDDAVAVDPPTRLSVRDPILERLSTCMRSEVEGGCPSGRLFA
                     DCLSLALLAR"
BASE COUNT          405 a         1042 c          925 g          446 t
ORIGIN      
        1 gcacacctgc tcgcgatcaa cgccggacgc gccggcaaga ttgcctacat cgacgactcg
       61 gcgcccctca cgtacggcga actcgacgag cgcgtgcggc gttgcgcggc tggcctgctc
      121 ggcctcggcc tgcgccgcga agaccgcgtg ctgatggcga tgcacgacag tgtcgaattc
      181 ccgatcgcgt ttctcggtgc gctctacgcg ggcatcgtgc cggtgccggt caatacgctg
      241 ctcacggccg acgactacgc ctacatgctc gagcacagcc gggcccgcgc cgtgctcgtc
      301 tcgcgcgccc tctggcctgc ggtcgccaag gcggtggcga gcgtgcggcg catgggtccg
      361 gcgctgccgg tggtgacctc gggcccgggc gccgcgcctc ccgacacgtt gctgttcgca
      421 cacctgctcg aggcgccagc gctcagcgag ccggccgaca ccctcgccga cgacttcgcc
      481 ttctggctct actcgtcggg ctcgaccggc cgcccgaaag gcgcggtcca cacgcacgcc
      541 aacctcttct ggtcggcggc gctctacggc acgccggtgc tcggcctgcg cgagagcgac
      601 gtgtgcttct cggccgcgaa gctcttcttc gcctacggcc tcggcaacgc cctgacgttc
      661 ccgctctcgg tcggcgcgac gaccgtgctg atggccgaac gcccgacccc caccgccgtg
      721 ttcaagcgct ggaccgagca cggcgtgacc gtcttcttcg gcgcgccgac cggctatgcc
      781 ggcatgctcg ccgcgcccga cctgccggcc cgctcgcagg tgaagctgcg cctgtgttcc
      841 tcggccggcg aagcgctgcc gcgcgagatc ggcgagcgct tcacggcgca cttcggctgc
      901 gagatcgtcg acggcctcgg ctcgaccgag atgctccaca tcttcctgtc gaaccgaccc
      961 ggcgacgtca attacggcag caccggccgc gcggtgcccg gttatcgcct gcgcctcgtc
     1021 ggcgagtcag gcgccgatgc ggcaccgggc gagatcggcg acctcctcgt cagcggcccg
     1081 acctcggcgt tgatgtactg ggcccagcgc gacaagtcgc gcgccacgtt ccagggcgag
     1141 tggaccaaga ccggcgacaa gtactccatc gacgcacgcg gctgctacgt ctacgccggc
     1201 cgcagcgacg acatgctgaa ggtgagcggc gtctacgtct cgccgttcga ggtcgaggcc
     1261 acgctgatgc agcaccccgc ggtgctcgaa tgcgcggtgt tcggcaagat cgacgccgac
     1321 gggctcacga agaccaaggc ctgcgtcgtc tgcaagccgg gccagagcgt cgacgagccc
     1381 gagctgaagg ccttcgtcaa ggaacgcctc gcgccgtaca agtacccgcg cttcatcgag
     1441 ttcatcgacg agttgccgaa gaccgcgacc ggcaagatcc agcgcttcaa gctgcgcgag
     1501 cgcgagcggc cttgaacgcg atgcccccat cgggcactgc gcgcatcgac tggcgcggcc
     1561 gcccgatcga cctcgaatac cagtggctcg gcgacgcgat gtcgacgcgc ccggtcgtcg
     1621 tcttcctgca cgagggcctc ggctcggtct cgatgtggcg cgacttcccg gcgcgcttct
     1681 gccgtgagca cgggctgcgc gggctcgtgg tctcgcgcta cggctacggt cgctcgacgc
     1741 ccaagccggc ggacgaagcc tggcccgccg acttcatgca cgcgcaggcg cgcgaagtgc
     1801 tgccggcgct gttcgcggcg ctcggcatcg aacggccctg gctcttcggt cacagcgacg
     1861 gcgcctcgat cgcgctgctg tacgcgagcg cgcacccggt ggccggcctg gtcgtcgtcg
     1921 cgccgcacat cttcgtcgag gagatctcgg tcgcgagcat cgagaaggcg cgcgccacgt
     1981 atgcgtcgac cgacctgcgc gaccggctcg cccgccatca cgacgacccc gattcggcgt
     2041 tccgcggctg gaacgacgcc tggctgagcc ccgaattccg cgactggaac atcgaggccg
     2101 cgctcgcgac gatcgactgc ccgatcctcg cgattcaggg cgaggacgac gaatacggaa
     2161 ccctggagca ggtgcgcggc atcgcgaggc gactacctgg gcgcactcgc gtgctcgaga
     2221 tcgcccactg cggccattca ccccaccgtg agcaacccga cctgctgatg cgcgaggcgg
     2281 gtctcttcat cgtttcgaac tcctgagcat gacctcgcac atccccctgg tcgaggacga
     2341 tcatgtcatc ggcctcgacg gcaaaccgct ggcgccgcta ccggtcaacg cctggtccgg
     2401 gctgccgttc gaaatccatc cgcacatgcg ccagggcgag gtcgcccatc gctacaaccc
     2461 gcatccactg ctgctcgtcc gcgtcggctc gcacggccgc tcgcgcattc ggtccgggca
     2521 cgcggtattc gacctgagat tggagccggg ccaggtggac gtcttctcgg ccggcttccg
     2581 gatggaccac gggtggtggg actgcacacc cggcgaggtg ctcgccatcg acatcgaccc
     2641 cgagcgcgct cggacgtacc tccacgacga tgcggtcgcg gtcgaccctc cgacccgact
     2701 gtccgtgcgc gacccgatcc tcgagcggct gtccacttgc atgcggagtg aagtcgaggg
     2761 gggctgcccg tccggaaggc tcttcgccga ctgcctttcg ctggcgctgc ttgcgcgc
//
LOCUS       DASVHM010000103         3857 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_584473, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000103 DASVHM010000000
VERSION     DASVHM010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3857
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_584473"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..288
                     /locus_tag="VF308_02005"
     CDS             <1..288
                     /locus_tag="VF308_02005"
                     /inference="COORDINATES: protein motif:HMM:NF015424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HEX7435454.1"
                     /translation="DIAVQREIQPSSASNQLTGTVLQVLDRDGPYCAIEIALRDRAPA
                     GERLWALVTRRSARGLAIEPGAAVVASFKAVAVEGRSVALHPDAGAPSARP"
     gene            329..901
                     /locus_tag="VF308_02010"
     CDS             329..901
                     /locus_tag="VF308_02010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEX7435455.1"
                     /translation="MPKTLLSLNAAPAREWIIDARTVLSGIGKRGIEGPRRVDALGIE
                     GDEQADLSVHGGLGKAVYAYPHEHYPFWETVRAQAGAAAWGEKLPFGALGENLTLSGL
                     LESEVWIGDGLRFADCVLAVSAPRFPCFKFNTAMGFMHAAKAMVAQAWCGFYLAVRAP
                     GTIRAGEAFEVVPGPREIGITELFRARMGR"
     gene            complement(927..2030)
                     /locus_tag="VF308_02015"
     CDS             complement(927..2030)
                     /locus_tag="VF308_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HEX7435456.1"
                     /translation="MPTLFDPLRFGDLVATNRIVMAPLTRDRAGPRQVPTELMATYYR
                     QRASAGLIVSEATQISAEGQGYLDTPGIYSPEQVAAWRQVTDAVHGAGGRMVVQLWHV
                     GRISHVSLLPGGQAPVSSTARRAIGKTFTSEGFVEVSEPRALRLDEMPRIVADYAHAA
                     RCAMQAGFDGVEVHGANGYLLDQFLRDSINDRSDAYGGPIEHRTRLLLEVMTAVAAEI
                     GAGRTGLRLSPVTPSNGAGQDSNAQALFDYAVERIAALKLAYLHVIEGQTGGARDVEA
                     FDYAALRERFKHLHPGGAWMVNNGYTREMAERVVASGEADLVAFGRPFISNPDLVARL
                     RDGAALAPLDQKTLFGGGAEGYTDYPALEAAQA"
     gene            2114..2956
                     /gene="rlmJ"
                     /locus_tag="VF308_02020"
     CDS             2114..2956
                     /gene="rlmJ"
                     /locus_tag="VF308_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HEX7435457.1"
                     /translation="MLAYRHAFHAGNHADVLKHIVLMLVLRHMNAKAKPYRLIDTHAG
                     AGGYSLEGRYAQKKGEYEQGILRLWDRGDLPEAVADYVDLVRRFNAGGRLEQYPGSPA
                     IASMLLRARDQLRLFELHPTDHRILASYLGTIPGAEVFDTDGFDGLKGQVPPSTRRAV
                     VLMDPSYEGNGDYARVVTSLRDAIARFAEGVYIVWYPQVTKLEAAQLPRRLEALAPKG
                     WLHARLTVQKPDAQGFGLAGSGIFVINPPYTLHEQLRVVLPYLTDVLGQYDGANYLLE
                     ERAA"
     gene            complement(2972..3532)
                     /locus_tag="VF308_02025"
     CDS             complement(2972..3532)
                     /locus_tag="VF308_02025"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEX7435458.1"
                     /translation="MRGIVLAACVAFSFGARAEERAIDKEIVVAAPIDAVWQTWTSKA
                     GIESFFAPEAEVDPRVGGAFHVHMDPLAQPGMKGADDMRFMALQRPTMLTFDWNAPPS
                     LPEARAQRTFVVVRLADIDGTSTRVTVHHTGWGSGGEWDKTYLYFDRAWGFVLGNLKK
                     RYDVGPQDWTEWMAGLRKAHEAQATK"
BASE COUNT          582 a         1341 c         1330 g          604 t
ORIGIN      
        1 gacatcgcgg tgcaacgcga gatccagccc tccagcgcga gcaaccagct gaccggcacg
       61 gtgctgcagg tgctcgatcg cgacggccct tactgcgcga tcgagatcgc actgcgcgat
      121 cgagcgcccg cgggcgagcg cctgtgggcg ctcgtgacgc ggcgctcggc gcgcggcctc
      181 gcgatcgagc ccggcgcggc ggtggtcgcg agcttcaagg cggtggcggt cgaggggcgc
      241 tccgtggcat tgcatcccga tgccggcgcg ccatcggctc gaccctgacg cgccgcgagt
      301 ccgatccgtt cgcagcccgt tcgacgccat gccgaagact ctcctgagcc tcaacgccgc
      361 gcccgcgcgc gaatggatca tcgacgcccg cacggtgctg agcggcatcg gcaagcgcgg
      421 catcgagggt ccgcgcaggg tcgacgcgct cggcatcgaa ggcgacgagc aggccgacct
      481 cagcgtgcac ggcggtctcg gcaaagcggt gtatgcctat ccgcacgagc actacccgtt
      541 ctgggagacg gtgcgcgcgc aggccggggc cgcggcctgg ggcgaaaagc ttccgttcgg
      601 cgcgctcggc gagaacctga ccctttccgg cctgctcgag tcggaagtct ggatcggcga
      661 tgggctgcgt tttgcggact gcgtcctcgc cgtcagcgcg ccgcgctttc cctgcttcaa
      721 gttcaacacg gcgatgggct tcatgcacgc ggccaaggcg atggtggcgc aggcctggtg
      781 cggcttctat ctggccgttc gcgcgccggg cacgatccgc gcgggcgaag cgttcgaggt
      841 cgttcccgga ccgcgcgaga tcggcatcac cgaactgttc cgcgcccgca tgggccgctg
      901 acgcgcaccg gaaggcgcgc cccgcgtcac gcctgcgccg cctcgagcgc cggatagtcg
      961 gtgtagccct cggcgccacc gccgaacagc gtcttctggt ccagcggcgc gagggcggcg
     1021 ccgtcgcgca ggcgcgcgac gaggtcgggg ttgctgatga aggggcgtcc gaacgcgacc
     1081 agatcggcct cgcccgaggc gacgacgcgt tccgccatct cgcgcgtata gccattgttg
     1141 accatccacg ccccgcccgg atggaggtgc ttgaagcgct cgcgcagggc ggcgtaatcg
     1201 aacgcctcga catcgcgcgc gcccccggtc tggccttcga tcacgtgcag gtaggcgagc
     1261 ttcaacgcgg cgatgcgttc gaccgcgtag tcgaagaggg cctgcgcgtt gctgtcctgc
     1321 ccggcgccgt tcgagggtgt gacaggcgag aggcgcaggc cggttcggcc cgcgccgatc
     1381 tcggcagcga ccgcggtcat cacctccagc aggaggcgcg tccggtgctc gatcgggccg
     1441 ccgtacgcgt cgctgcggtc gttgatgctg tcgcgcagga actggtcgag caggtagccg
     1501 ttggcaccgt gcacctcgac accgtcgaag ccggcctgca tcgcgcagcg cgcggcgtgc
     1561 gcatagtcgg cgacgatgcg cggcatctcg tcgagacgca gcgcgcgcgg ctcggagacc
     1621 tcgacgaatc cttcgctcgt gaaggtcttg ccgatggcgc ggcgcgcggt cgaggacacc
     1681 ggcgcctggc caccgggcag cagcgacaca tgcgagatgc gccccacatg ccaaagctgg
     1741 acgaccatcc ggccccccgc gccatgcact gcatccgtca cctggcgcca tgcggccacc
     1801 tgctcggggc tgtagatgcc cggcgtgtcg agataaccct ggccttcggc gctgatctgg
     1861 gtggcctcgg agacgatcag cccggcgctg gcgcgctgcc ggtagtaggt cgccatcaat
     1921 tcggtgggca cctggcgcgg accggcgcgg tcgcgcgtca atggcgccat cacgatgcga
     1981 ttggtggcga caaggtcgcc gaagcggagg ggatcgaaca aggtcggcat ggcgtcgggg
     2041 cgaagtgagg caaccactag gttaactggc aacgcaccgt acagtccgat ctccgactgc
     2101 tccgccaccc ttcatgctcg cctaccgcca tgcgtttcac gccggcaacc acgccgacgt
     2161 gctcaagcac atcgtgctca tgctggtgct gcgccacatg aacgccaagg cgaagccgta
     2221 tcggctgatc gacacccacg ccggcgccgg cggctattcg ctcgaaggcc gctacgcgca
     2281 gaagaagggc gaatacgagc agggcatctt gcgcctctgg gaccgcggcg acctgcccga
     2341 ggcggttgcc gattacgtcg acctggtgcg acgattcaac gccggcggac gcctcgagca
     2401 gtaccccggc tcgcccgcca tcgcctcgat gctgttgcgc gcccgcgacc agttgcgcct
     2461 cttcgaactg catccgaccg accaccgcat cctcgcctcg tatctcggca cgatccccgg
     2521 tgccgaagtc ttcgacaccg acggcttcga cggcctgaaa ggccaggtgc cgccatcgac
     2581 gcgccgcgcc gtcgtgctga tggacccgag ctacgagggc aacggcgact atgcccgcgt
     2641 cgtcacctcg ctgcgcgacg cgatcgcgcg gttcgcggag ggcgtctaca tcgtctggta
     2701 tccgcaggtg accaagctcg aagcggcgca attgccgcgc cgcctcgaag cgctcgcgcc
     2761 caaaggctgg ctgcatgcgc gcctcaccgt gcagaagccc gacgcgcaag gcttcggtct
     2821 cgccggcagc ggcatcttcg tcatcaatcc gccgtacacg ctgcacgagc agttgcgggt
     2881 cgtgctgccg tacctgaccg atgtgctcgg ccaatacgac ggcgcgaact acctgctcga
     2941 ggagcgcgcg gcctgaagcc ggcgccgaat cctacttcgt cgcctgcgcc tcgtgtgcct
     3001 tgcgcaggcc ggccatccac tcggtccagt cctgcggccc gacgtcgtag cgcttcttca
     3061 ggttgccgag cacgaagccc caggcgcggt cgaagtagag ataggtcttg tcccattcgc
     3121 cgccgctgcc ccagccggtg tggtgcaccg tgacccgggt cgacgtgccg tcgatgtcgg
     3181 ccaggcgcac gacgacgaag gtacgctggg cgcgcgcctc gggcagggac ggcggcgcgt
     3241 tccaatcgaa agtcagcatc gtcgggcgct gcagggccat gaaacgcatg tcgtccgcgc
     3301 ccttcattcc gggctgggcg agcgggtcca tgtggacgtg gaaggcaccg ccgacgcgcg
     3361 ggtcgacctc ggcttcgggc gcgaagaacg attcgatgcc ggccttgctg gtccacgtct
     3421 gccagaccgc atcgatcggc gccgcgacga cgatttcctt gtcgatggcc ctctcttcgg
     3481 cgcgtgcgcc gaagctgaat gcaacgcagg cggcaagcac gattccacgc atgtccgatc
     3541 ctccccggcg gctgaacctg aacactacca tcggcgccgc ggtcggggcg tcaggggcgg
     3601 gcaggagcag aacctgtggg gttcgttctt ctcgcgcgcc gatggcgtgg gctcttcaac
     3661 cgggtggggc tggtggtcgg cgacgccgtc ggcgccgctt cggtgacgcc ggcgcacctg
     3721 cgcgagcggg tcgggcgtct gctggcatcg cgatcggaac gcttacggtc cgaaacgcct
     3781 tcggcggtgc gctcaggatg tcgcggccga tgcgttcata ttcggaaatc acctgcgcgc
     3841 cgagcagcaa caacgtg
//
LOCUS       DASVHM010000104         5147 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_7231, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000104 DASVHM010000000
VERSION     DASVHM010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5147
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7231"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(89..2428)
                     /locus_tag="VF308_02030"
     CDS             complement(89..2428)
                     /locus_tag="VF308_02030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1631 family protein"
                     /protein_id="HEX7435459.1"
                     /translation="MPTPANPSALAQQARRFYAERLLQGLPAVVQAIDQGAKILAGAV
                     AEPMLAMRRRDAMQELLNAAPMWLGGMTTLLRGAVQSGNLSASLTGDLPGLSGRQAKL
                     TLVDDDTIEHEILSSRLALAMMDRASWEFTDLRARMNSLESRDELDAIDILRPHVLAR
                     LVTSSWLGSTLTLDAWRVLQPVLHDELSHFAEEAYHETNRWLLQRRVLPETDLRPFIR
                     RSIDSGRTTNVGPGPGAGGFGAATGMGSGLGSSLGTSYHAAEPRGSDNHGEVSDETRM
                     MTRAGGLSRGPDPAEAVINRLNRLVGRQLPEFGDTSRAPLPPSPGLSAAISQAQQSIV
                     RRLAPPSGAGVTAPSTPQLLEELQQRKIALKQAATTPIERATIEIVALLFQSILTEDT
                     IPASVRVWFARLQMPVLRVAVSEPDFFATVDHPARRLIDRMGSCVMGFDATTRAVGDV
                     LEREIKRIVQVVEAYPDTGRRVFQTVLVEFEKFLEHYFRTENEASRKGVSLAHQVEQR
                     ETMAIQYTIELRKMLNEVPVQEGVREFLFHVWADVLATTAVKSGIQGDATKAMKRAAA
                     DLIWSASAKVSRAERAEVIRRLPPLLKTLRDGMDDAGISAQKQDEHIQRLNNSLAAAF
                     TAKAAAISHERLEELMGRLETLEELLPETEDMEIDESMVLDLSGHESSELEVVGEGGS
                     MPTPAMLAWARELQVGSWYMLDYRGRNEAVQLAWQGMRRQLTLFVSPQGRGVLFQQHR
                     LAAFLQAGLLVPAQDEALTVRATRSAMAKLDGDPSRLLG"
     gene            complement(2470..3501)
                     /gene="secF"
                     /locus_tag="VF308_02035"
     CDS             complement(2470..3501)
                     /gene="secF"
                     /locus_tag="VF308_02035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016723719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEX7435460.1"
                     /translation="MEFFRIRRDIPFMRHALVFNIISLLTFLAAVFFLATRGLHFSIE
                     FTGGTVIEAAYAQAADIGKVRTALESLDLGEVQVQNFGSSRDVLIRVPVKEGVKQADL
                     VTRVFAQLCKTEGGTVAAAQASTDKGESTPRQVCSAGSAEPVKLQRSEVVGPQVGREL
                     AEDGAKALAFVVAGIMIYLAFRFEWKFSIAAVVANLHDVVIILGFFAFFQWEFSLTVL
                     AAVLAVLGYSVNESVVIFDRIRESFRRYRKMTTREVIDHAITSTISRTIITHGCTQMM
                     VLSMLVFGGQTLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDLVKAGPKETDP
                     DDPNAGAVV"
     gene            complement(3545..>5147)
                     /gene="secD"
                     /locus_tag="VF308_02040"
     CDS             complement(3545..>5147)
                     /gene="secD"
                     /locus_tag="VF308_02040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEX7435461.1"
                     /translation="TKALNPDPEDTSYIVALNLLSRSPRWLTALHALPMFLGLDLRGG
                     VYFLMQVDMKSALVKKAEALTGDIRTLLRDKNIRHTGIARDGNDVTIRFRDSDTLSAA
                     RTLLQDQLTDLQWQAGADGGDFRLTGSLKPEASRRVQSTAITQNITTLHNRVNELGVA
                     EPVIQQQGQDRVVVQLPGVQDTAKAKDIIGRTATLELRMVDDSTEGRAAAGGTGPVPF
                     GTERYVERGGAPLIVKRQVVLTGDNLTDAQPGFDSQTQEPVVHLTLDAKGARIIKDVS
                     RESVGKRMAILLFEKGKGEVVTAPVIRSELGSRIQISGRMTTAEANDNALLLRAGSLA
                     APMEIIEERTIGPSLGAENISKGFHSVIFGFAAIALFMCAYYLLFGVISTLALGFNLL
                     LLVAVLSMLQATLTLPGMAAIALTLGMAIDANVLINERVREELRAGAAPQVAINTGYE
                     RAWATILDSNVTTLIAGVALLTFGSGPVRGFAIVHTLGILTSMFSAVVFSRGLVNLWY
                     GRQKRLKGVSIGQVWKPQAAAPGKV"
BASE COUNT          802 a         1733 c         1763 g          849 t
ORIGIN      
        1 ctgtctgtga aagtggacac gcgtgtccac tttcacccgg tgtcatcctg agcgcagcga
       61 aggatctcgg cgtgcaagcg ctcggagttc agcccaggag tcggctcgga tctccgtcga
      121 gcttggccat cgcgctgcgc gtggcacgca cggtgagcgc ctcgtcctgc gccggcacca
      181 gcagcccggc ctgcaggaac gccgccaacc gatgctgctg gaacagcacg ccgcgcccct
      241 gcggagagac gaagagcgtg agctggcgcc gcataccctg ccaggcgagc tgcaccgcct
      301 cgttgcggcc gcgatagtcc agcatgtacc agctgccgac ctggagctcg cgggcccagg
      361 cgagcatggc cggggtcggc atcgagccac cctcgccgac cacctcgagc tcggagcttt
      421 catggcccga cagatcgagc accatcgact cgtcgatttc catgtcctcg gtctcgggca
      481 gcagttcctc gagcgtttcg aggcgtccca tcagctcctc gagccgctcg tgcgagatcg
      541 ccgccgcctt cgccgtgaag gccgcggcga gcgaattgtt gaggcgctgg atgtgctcgt
      601 cctgcttctg cgccgaaatt ccggcatcgt ccatgccatc gcgcagcgtc ttcagcagcg
      661 gcggcagacg ccggatcact tcggcgcgct cggcgcgcga caccttcgcg ctggccgacc
      721 agatcaggtc ggccgcggcg cgcttcatcg ccttggtcgc atcgccctga atgcccgact
      781 tgacggccgt cgtggccagc acgtcggccc agacgtggaa caggaattcg cgcacgccct
      841 cctgcaccgg cacctcgttg agcatcttgc gcagctcgat cgtgtactgg atcgccatgg
      901 tctcgcgctg ctcgacctgg tgggcgagcg acacgccctt gcgagacgct tcgttttcgg
      961 tgcggaagta gtgttcgaga aacttttcga actcgaccag caccgtctgg aacacgcgac
     1021 gcccggtgtc gggataagcc tcgacgacct ggacgatgcg cttgatctcc ctttcgagca
     1081 cgtcgccgac ggcgcgcgtg gtcgcatcga accccatcac gcacgatccc atccggtcga
     1141 tgaggcggcg cgccgggtgg tcgacggtcg cgaagaaatc gggttccgac accgcgacgc
     1201 gcagcaccgg catctgcagc cgcgcgaacc agacccgcac cgacgcggga atcgtgtctt
     1261 cggtcaggat gctctggaac agcagcgcga cgatttcgat cgtggcacgc tcgatcggcg
     1321 tcgtggcggc ttgcttgagc gcgatcttgc gctgctgcaa ttcctcgagc aactgcggcg
     1381 tgctcggggc cgtcacgccc gcgccgctcg gcggcgcgag gcgacgcacg atgctctgct
     1441 gggcctggct gatcgccgcg ctcaagcccg gcgagggcgg cagcggcgcg cgcgaggtat
     1501 cgccgaactc gggcagctgg cgcccgacca ggcggttgag gcgattgatc acggcctcgg
     1561 ccggatcggg gccgcggctg agacccccgg cgcgcgtcat catgcgcgtc tcgtcgctga
     1621 cctcgccgtg gttgtcggag ccgcgcggct cggccgcgtg atagctcgtg ccgaggctcg
     1681 agcccaggcc cgagcccatc ccagtcgccg cgccgaaacc gccggcgccc ggtcccgggc
     1741 ccacgttcgt agtccggccg gagtcgatcg agcggcgaat gaaaggccgc aggtcggtct
     1801 cgggcagcac gcgccgctgc aggagccagc ggttcgtctc gtgatacgcc tcttcggcga
     1861 agtgcgaaag ctcgtcgtgc aggaccggtt gcagcacgcg ccaggcgtcg agggtgaggg
     1921 tcgagccgag ccaggacgac gtcacgagac gggccagcac gtgcggccgc aggatgtcga
     1981 tcgcgtcgag ctcgtcgcgg ctctcgagcg aattcatgcg cgcgcgcaga tcggtgaact
     2041 cccacgacgc gcggtccatc attgccagcg ccaggcgcga actcaggatc tcgtgctcga
     2101 tcgtgtcgtc gtcgaccagg gtcagcttgg cctgccggcc tgaaagccct ggcagatcgc
     2161 cggtcaacga cgccgagagg ttcccgctct gcaccgcgcc gcgcagcaga gtcgtcatgc
     2221 cacccagcca catcggtgcg gcgttcagca gttcttgcat ggcgtcacgg cgtcgcatcg
     2281 cgagcatcgg ctcggcgacg gcaccggcga gaatcttcgc cccctggtcg atcgcctgca
     2341 ccaccgccgg caggccctga agcagccgct ctgcatagaa tcgccgcgcc tgctgagcca
     2401 atgccgaagg gttggcgggg gtcggcatgg gtgtgcgggg atgcgtcctg tggaaagtcg
     2461 cgttcgactc tacaccacgg cccccgcatt gggatcgtcg ggatcggttt ccttcggccc
     2521 cgccttgacg aggtcttcgc gcttgacgcc gagccacatc gcgatcgccg ccgcgacgaa
     2581 gaccgacgag tagatgccga acaggatgcc gatcgtcagc gccagcgcga agtagtgcag
     2641 cgtctggccg ccgaagacca gcatcgacag caccatcatc tgggtgcagc cgtgggtgat
     2701 gatggtgcgg ctgatggtgc tcgtgatcgc gtggtcaatg acctcgcgcg tcgtcatctt
     2761 gcggtagcgc cggaacgact cgcggatccg gtcgaagatg accaccgatt cgttcaccga
     2821 atagccgagt accgcgagca ccgccgccag caccgtgagc gagaactccc actggaagaa
     2881 ggcgaagaag ccgaggatga tgacgacgtc gtgcaggttg gcgacgacgg cggcgatcga
     2941 gaacttccat tcgaagcgaa acgccaggta gatcatgatg ccggcgacca cgaaggcgag
     3001 cgccttggcg ccgtcctcgg ccagttcgcg cccgacctgc ggcccgacga cctcgctgcg
     3061 ctgcagcttc accggctcgg cgctgccggc cgagcagacc tggcgcgggg tcgactcgcc
     3121 cttgtcggtg ctcgcctgcg ccgcggccac ggtgccgccc tcggtcttgc acagctgggc
     3181 gaagacgcgc gtgacgaggt cggcctgctt cacgccttcc ttcaccggca cgcggatcag
     3241 cacgtcgcgc gagctgccga agttctgcac ctggacttcg ccgaggtcga ggctctccaa
     3301 cgcggtgcgc accttgccga tgtccgcggc ctgtgcatag gccgcttcga tcaccgtgcc
     3361 gccggtgaac tcgatcgaga agtgcagccc gcgcgtggcg aggaagaaga cggcggcgag
     3421 gaaggtcagc agcgagatga tgttgaacac cagcgcgtgc cgcatgaacg ggatgtcacg
     3481 cctgatcctg aagaattcca tgcgatgcct tgttgcttgc gctgcgtgtc ggtagaccgc
     3541 cgcttcagac cttgccgggc gccgcggcct gcggcttcca gacctggccg atcgagacgc
     3601 ccttgagccg cttctgccgc ccgtaccaga ggttgacgag gccgcgcgag aagaccaccg
     3661 ccgagaacat cgaggtcagg atgccgagcg tgtgcacgat cgcgaagccg cgcaccggcc
     3721 cggagccgaa cgtcagcagc gcgacgccgg cgatcagcgt cgtgacgttg gagtcgagga
     3781 tggtcgccca agcgcgctcg taaccggtgt tgatcgcgac ctgcggcgcc gcaccggcgc
     3841 gcagctcctc gcggacgcgc tcgttgatca gcacgttggc gtcgatcgcc atgccgagcg
     3901 tgagcgcgat ggccgccatg ccgggcaagg tcagggtcgc ctgcagcatc gagagcaccg
     3961 cgaccagcag cagcaggttg aagccgagcg cgagcgtcga gatcacgccg aacagcaggt
     4021 agtaggcgca catgaacagg gcgatcgcgg caaagccgaa gatgacgctg tgaaagccct
     4081 tcgagatgtt ctcggcgccc aggctcgggc cgatcgtgcg ctcttcgatg atttccatcg
     4141 gcgcggcgag cgagccggcg cgcagcagca gcgcgttgtc gttggcctcg gcggtcgtca
     4201 tgcggccgga gatctggatc cggctgccga gttcggagcg gatcaccggc gcggtgacga
     4261 cctcgccctt gcctttttcg aacagcagga tcgccatgcg cttgccgacg ctttcgcgcg
     4321 acacgtcctt gatgatgcgg gcgcccttcg cgtcgagcgt caggtgcacg accggctcct
     4381 gcgtctggct gtcgaagccg ggctgggcat cggtgaggtt gtcacccgtc agcacgacct
     4441 ggcgcttgac gatcagtggc gcgccgccgc gttcgacgta gcgctcggtg ccgaacggca
     4501 ccgggccggt gccgccggcc gcggcgcggc cctcggtgct gtcgtcgacc atgcgcagtt
     4561 cgagtgtcgc ggtgcggccg atgatgtcct tcgccttcgc ggtgtcctgc acgccgggca
     4621 gctggaccac gacccggtcc tgcccctgct gctggatcac cggttcggcc acaccgagct
     4681 cgttgacccg gttgtgcagc gtcgtgatgt tctgtgtgat cgcggtcgac tggacccggc
     4741 gcgacgcctc gggcttgagg ctgccggtca gcctgaagtc gccgccgtcg gcgccggcct
     4801 gccactgcag gtcggtcagc tggtcctgca gcaaggtccg cgccgcgctc agcgtgtcgc
     4861 tgtcgcggaa gcggatcgtc acgtcgttgc cgtcgcgggc gatgccggtg tggcggatgt
     4921 tcttgtcgcg cagcagcgtg cggatgtcgc cggtcagcgc ctcggccttc ttcacgagcg
     4981 ccgacttcat gtcgacctgc atcaggaagt agacgccgcc gcgcaggtcc aggccgagga
     5041 acatcggcag cgcgtgcaat gccgtgagcc agcgcggcga gcgcgaaagc aggttcaggg
     5101 cgacgatgta gctggtgtcc tccggatcgg ggttgagggc cttggtg
//
LOCUS       DASVHM010000105         2781 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_584831, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000105 DASVHM010000000
VERSION     DASVHM010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2781
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_584831"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1318
                     /locus_tag="VF308_02045"
     CDS             <1..1318
                     /locus_tag="VF308_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7435462.1"
                     /translation="TLAPGMSVAENLLLAGGRTPALIDWGKERRALAEFLRSTPFTLD
                     LDATPSGLAAGEKQKLELLKQLYLKPRLLILDEPTSVLTPQEADEVLAYVRAVARRGE
                     CTVLMITHKFREVMAYADEVTVLRRGRKVHGAKVAETTPAQLAQAMIGESAAGASAAA
                     AEGHAVPRTPTVADAPIGLEVESLSAMGDRGTLAVRELSLAVRQGEILGIAGVSGNGQ
                     RELVEAIVGQRARVGGSVRVTGQPYVGRRSENRVLQLRALTEEPLRSASVGELSVANN
                     MALRDFDQAPLQGGTVPGLQWLRYGAWRERARAWIAEYGIKTRGENAPIASLSGGNVQ
                     RAVLARELAGTIKVLIAANPVFGLDFAAVTEIHSRILQVRARGGAVLLVSEDLDELLE
                     LSDRIAVMSEGRIVFETPAARADRRMIGAHMGGAADHHDEPEKAAA"
     gene            1315..1995
                     /locus_tag="VF308_02050"
     CDS             1315..1995
                     /locus_tag="VF308_02050"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HEX7435463.1"
                     /translation="MRDGYLKIRATPSIYSLSPGSTALVVIDMQRDFLQAGGFGASLG
                     NDVTLLHAAIEPIAALLKAWRARGWPILHTREAHKPDLSDCPPSKRLRGPRRKRIGDD
                     GALGRLLIAGELGAEIIPELAPLPGELVIDKPGKGMFWGTGLHEILQANVITHLVFTG
                     VTTEVCVQTSMREANDRGYECLLVEDGTESYFPEFKAATLAMIAAQGAIVGWHAPSTA
                     LLARLPPA"
     gene            complement(2058..2471)
                     /locus_tag="VF308_02055"
     CDS             complement(2058..2471)
                     /locus_tag="VF308_02055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435464.1"
                     /translation="MGERAQVEIARGQPGVARDVADAELRALRQQLGNARLPDPQARL
                     LLARGQALQALGDLARAEDDLQAALALRHLHDDEASLWLAQVQIALAGCLAASGRRDD
                     AQALLDRASHIHAKHRPLGRHLAAQLERAREALRS"
     gene            complement(2471..>2781)
                     /locus_tag="VF308_02060"
     CDS             complement(2471..>2781)
                     /locus_tag="VF308_02060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435465.1"
                     /translation="DLREYFPHSYMLAEREAELADLALVYGRYDEAQSLIDAARQRWQ
                     RYAGDHAAPARGAMFELVGARLGLARGQPDDAMVCLDGVAAAPTAALGRFHFISRRCS
                     "
BASE COUNT          436 a          987 c          981 g          377 t
ORIGIN      
        1 cacgctcgcg ccgggcatga gcgtggccga gaacctgctg ctcgccggcg gccgcacgcc
       61 ggcgctgatc gactggggca aggagcgccg ggcgctcgcc gaattcctgc gctcgacgcc
      121 cttcacgctc gacctcgacg cgacaccctc aggcctggcc gcgggcgaga agcagaagct
      181 cgaactgctc aagcagctct acctcaagcc gcgcctgcta atcctcgacg aaccgacctc
      241 ggtgctgacg ccgcaggagg ccgacgaggt gctcgcctat gtgcgtgcgg tggcgcggcg
      301 cggcgaatgc acggtgctga tgatcacgca caagtttcgc gaggtgatgg cgtatgccga
      361 cgaggtgacc gtgctgcgcc gcggccgcaa ggtgcacggc gcgaaggtgg cagaaaccac
      421 gccggcgcag ctggcacagg cgatgatcgg cgaatcggcg gccggggctt cggctgccgc
      481 ggccgagggc cacgcggtgc cgcgcacccc gacagtcgcg gatgcaccga tcgggctcga
      541 agtcgaatcc ttgagcgcga tgggcgaccg cggcacactc gcggtgcgcg agctcagcct
      601 cgcggtgcgc cagggcgaga tcctcggcat cgcgggtgtc tcgggcaacg gccagcgcga
      661 gctggtcgag gcgatcgtcg ggcagcgcgc gagggtcggc ggcagcgtgc gagtcaccgg
      721 ccagccgtat gtcggacggc gcagcgaaaa ccgcgtgctg cagttgcgcg cattgaccga
      781 ggaacccttg cgcagcgcga gcgtcggcga actcagcgtc gccaacaaca tggccttgcg
      841 cgacttcgac caggcgcccc tgcagggcgg cacggtgccc ggcctgcagt ggctgcgcta
      901 cggcgcatgg cgcgaacgcg cgcgcgcctg gatcgcggag tacggcatca agacgcgcgg
      961 cgagaacgcg ccgatcgcga gcctctcggg cggcaacgtt cagcgcgccg tgctggcgcg
     1021 cgaactcgcc gggacgatca aggtgctgat cgcggcgaac cccgtgttcg ggctcgactt
     1081 cgcggccgtg accgaaatcc actcgcgcat cctgcaggtg cgggccaggg gcggggcggt
     1141 cctgctggtc agcgaggatc tcgacgagct gctcgaactc agcgaccgca tcgccgtgat
     1201 gagcgaaggc cgcatcgtct tcgagacgcc cgccgcgagg gccgaccgcc gtatgatcgg
     1261 cgcgcacatg ggcggtgctg cggaccatca cgacgaaccc gagaaagcgg ctgcatgaga
     1321 gacggctacc tcaagattcg cgccacgccg tccatctact cgctctcgcc aggcagtacc
     1381 gcgctggtcg tgatcgacat gcagcgcgac ttcctccagg cgggcggctt cggcgcctcg
     1441 ctcggcaacg acgtgacact gctgcacgcc gcgatcgagc cgatcgccgc actgctcaag
     1501 gcctggcgcg cgcgcggctg gccgatcctg cacacgcgcg aagcgcacaa gcccgacctt
     1561 tccgactgcc cgccgtccaa gcgactgcgt ggccctcgga ggaagcgcat cggcgacgac
     1621 ggcgcgctgg ggcgcctgct gatcgccggc gagctgggcg ccgagatcat tcccgaactc
     1681 gcaccgctgc ccggtgaact cgtcatcgac aagcccggca aaggcatgtt ctgggggacc
     1741 ggcctgcacg aaatcctgca ggccaacgtg atcacgcacc tcgtcttcac aggcgtgacg
     1801 acggaggtct gcgtgcagac ctcgatgcgc gaggccaatg atcgcggcta cgagtgcctg
     1861 ctcgtcgaag acggcaccga aagctacttc cccgagttca aggccgccac gctcgcgatg
     1921 atcgcggcgc agggcgcgat cgtcggctgg cacgcgccct cgaccgcgct gctggcccga
     1981 ctgccccccg cctgaccgcg ccctgcccga cggcattcgc gaggagcctt ccaggtcagc
     2041 ggttcgagag ggcatcgtca cgatcgcagc gcctcgcggg cgcgttcgag ctgcgccgcc
     2101 agatgccgcc ccagcgggcg atgcttcgcg tggatgtgcg acgcgcgatc gagcaatgcc
     2161 tgagcatcgt cgcgtcggcc ggacgcggcc aggcatccgg ccagcgcgat ctgcacctgt
     2221 gccagccaca ggctggcctc gtcgtcgtgc aggtggcgca gcgcgagcgc ggcctgaagg
     2281 tcgtcttcgg cacgcgcgag gtcgccgagc gcctgcagcg cctgtccgcg cgcgaggagc
     2341 aggcgcgcct gcgggtcggg cagccgggcg ttgccgagct gctggcgcag cgcccgcaat
     2401 tcggcgtcgg ccacgtcccg cgccacgccg ggctggccgc gcgcgatctc cacctgggcg
     2461 cgctcgccca tcagctgcat cgtcttgaaa tgaaatgaaa gcgcccgagc gccgcggtcg
     2521 gcgccgccgc cacgccgtcc agacacacca tggcgtcgtc gggctgcccg cgcgccaggc
     2581 cgaggcgtgc gccgacgagc tcgaacatgg caccgcgcgc cggcgcggcg tggtcaccgg
     2641 catagcgttg ccagcgctgg cgtgccgcat cgatcaacga ctgggcctcg tcgtagcgtc
     2701 catacacgag cgccagatcg gccagctcgg cctcgcgttc ggccagcatg tacgagtgcg
     2761 ggaagtactc ccgaagatcc t
//
LOCUS       DASVHM010000106         4064 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1377841, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000106 DASVHM010000000
VERSION     DASVHM010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1377841"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..466)
                     /locus_tag="VF308_02065"
     CDS             complement(<1..466)
                     /locus_tag="VF308_02065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase family protein"
                     /protein_id="HEX7435466.1"
                     /translation="MIVERIWTGNSYRNFNYLIACPETGEALAIDPLDHGKCLAKAKA
                     NGWRITQILNTHEHHDHTGGNAAVVAATGAKVIAHARAAGRIDDVDRGVNAGDVIKVG
                     KRVELECLDTPGHTMCHICLRSHTDQPALFSGDTLFNAGAGNCHNGGDPNELY"
     gene            556..1281
                     /locus_tag="VF308_02070"
     CDS             556..1281
                     /locus_tag="VF308_02070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease activity regulator RraA"
                     /protein_id="HEX7435467.1"
                     /translation="MTELEVMPLGADRIEALERITTATLTTVLLKKGLRNVWMRGTRP
                     LAPGQARCVGRAFTLRFVPAREDLATPASWGAPISTRAAIEAMPEGVIAVVDAMGITD
                     AGIFGDILCARMKRRAVAALVSDGVIRDRDGVLGTGLPVWCQGAAAPASVAGLTFVNW
                     QEPIGCGGVAVFPNDVVVADGDGAVVIPAALADEVIAAAVEQERQEAWIMREVEGGAA
                     LPGLYPMNQASKARYEAWKLRRP"
     gene            complement(1304..2386)
                     /locus_tag="VF308_02075"
     CDS             complement(1304..2386)
                     /locus_tag="VF308_02075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435468.1"
                     /translation="MNPLRRLAALGIALAGLVLGSGCTTTSLLLSAVGASTDTSVTWS
                     VIKHFHEQMTEGDARPCSLLNSVQRALNARCGAFVPGSIVAADLERTGLAECALTLAA
                     RDPHLWPALPEMLDKGARVEACTESPMVALAQRLPCPDFATASAESLRALAQLAETDP
                     RAVHHDAVRMLSCPAARSVGLDGVIATWRAHGSMKPGTLGFSPLGALHPDALSSPLAR
                     DLEADGHTARAALGGYDGVLRPGFEEALRTSHWAALEWWLQRLPELARRVPPTQGNQL
                     TWLPLARVLVPNFLANPESQKDMVAFLLARGADPRQRLPSNPDQSVLAFARLLKSPML
                     PLLDPPAVVTGAERLAAAPRTTQPAE"
     gene            complement(2468..3745)
                     /locus_tag="VF308_02080"
     CDS             complement(2468..3745)
                     /locus_tag="VF308_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017449796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7435469.1"
                     /translation="MTHEPDSKYAALRLGVTLALMTIGSSGMYVVAVVLPAVQADFGV
                     DRADASLPYTLTMIGFGVGGLLMGRLADRFGVTLPLLIGAAGLGLGFAAAGLAPNIWV
                     FAIAHGVLIGLAGSSATFAPLIADTSLWFVRRRGIAVAICASGNYFGGAIWPPVVQRF
                     VEAFGWRSTYLGLALFCALGMTALALLMRPRPSVAVMAATAGASPSASARPFGLAPRV
                     AQRLLCVAGLSCCVAMSMPQVHIVAYCGDLGYGAARGAEMLSLMLACGVVSRLVSGAI
                     CDRIGGLRTLLVGSLLQGLALLLFLPFDGLLSLYVISALFGLFQGGIVPSYAIIVREH
                     FAPAEAGARVGSVLMFTMFGMALGGWMSGKVFDLTGSYHAAFVNGVAWNLLNLCIVIV
                     LLRRAGPLKAAVDRPRRDTIDTLSHNRARPNPS"
     gene            3806..>4064
                     /locus_tag="VF308_02085"
     CDS             3806..>4064
                     /locus_tag="VF308_02085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435470.1"
                     /translation="MSLRLRLILLALAVFLPALVAALWVISRAYDSERAGLERGLRDT
                     TRALALVIDGELSKRATVARVLADSPYLDSAPNLADADLRRF"
BASE COUNT          637 a         1335 c         1511 g          581 t
ORIGIN      
        1 catagagctc gttcgggtcg ccgccgttgt ggcagttgcc ggcgccggcg ttgaacagcg
       61 tgtctccgga aaagagcgcc ggctggtcgg tgtgcgagcg caggcagatg tggcacatgg
      121 tgtggcccgg cgtgtccagg cactcgagct cgacgcgctt gccgaccttg atcacgtcgc
      181 ccgcgttgac gccgcgatcg acgtcgtcga tgcggcctgc ggcgcgcgca tgggcgatca
      241 ccttcgcgcc ggtcgccgcg acgacggcgg cgttgccgcc ggtgtgatcg tggtgttcgt
      301 gcgtgttgag gatctgcgtg atgcgccagc cgttggcctt cgctttcgcc agacacttcc
      361 cgtggtcgag cggatcgatc gccagggcct cgccggtttc ggggcaggcg atcaggtagt
      421 tgaagttgcg gtaggaattg ccggtccaga ttcgctcgac gatcacgggg ggcctccgaa
      481 gcatcggtgc tgcaagggtt ccgattctag aaagcccgcg agcgcgccct atcatcgttc
      541 gaagggggaa gaagaatgac cgaactcgaa gtcatgccgc tcggcgccga tcgcatcgaa
      601 gcgctcgagc gcatcaccac cgcgacgctg acgaccgtgc tgctcaagaa gggactgcgc
      661 aacgtgtgga tgcgcggcac gcgcccgctc gcgcccggcc aggcgcgctg tgtcgggcgc
      721 gccttcacgc tgcgcttcgt gccggcccgc gaagacctgg cgacgccggc gtcgtggggc
      781 gcgccgatct cgacgcgggc ggcgatcgag gcgatgccgg aaggcgtgat cgcggtcgtc
      841 gatgcgatgg gcatcaccga tgccggcatc ttcggcgaca tcctctgcgc ccgcatgaag
      901 cggcgcgcgg tcgccgcgct cgtcagcgac ggcgtcatcc gcgaccggga cggggtgctc
      961 ggcaccggcc tgccggtgtg gtgccagggc gccgcggcgc cagcatcggt cgcggggttg
     1021 acgttcgtga actggcagga gccgatcggt tgcggcggcg tcgcggtgtt tccgaacgac
     1081 gtggtcgtgg ccgacggcga cggtgcggtc gtgataccgg ccgcgcttgc cgacgaggtg
     1141 atcgccgcgg ccgtcgagca ggagcgccag gaggcctgga tcatgcgcga ggtcgaaggc
     1201 ggcgcggcgc tgcccggcct ctatccgatg aaccaggcga gcaaggcgcg ctacgaggcg
     1261 tggaagctgc gccggccctg agcgggcttg ccggcgccgc gattcattcg gcgggttgcg
     1321 tggttctcgg cgccgcggcg agccgctccg cgccggtcac gacggcaggc ggatcgagca
     1381 gtggcagcat cggactcttc aggaggcgcg cgaaggcgag caccgattga tcggggttcg
     1441 agggcaggcg ctggcgcgga tcggcgccgc gggcgagcag gaacgcgacc atgtccttct
     1501 ggctttccgg gttggcgaga aagttcggca ccagcacgcg ggcgagcggc agccaggtga
     1561 gctggttgcc ttgcgtgggc gggacgcgcc gggcgagttc gggcagacgc tgcagccacc
     1621 actcgagggc agcccagtgg ctggtgcgca aggcttcctc gaaaccgggg cggagcactc
     1681 cgtcatagcc gccgagcgcg gcgcgcgcgg tgtggccatc ggcttcgaga tcgcgcgcga
     1741 gcggcgacga cagtgcatcg gggtggagcg cacccagcgg actgaagccg agtgtccccg
     1801 gcttcatcga cccgtgcgcg cgccaggtgg cgatcacgcc gtcgagcccg acgctgcgtg
     1861 cggccgggca gctcagcatg cgcaccgcgt catgatggac cgcgcgcgga tcggtctcgg
     1921 cgagctgcgc cagcgcgcgc agcgactcgg ccgaggcagt ggcgaagtcg gggcagggca
     1981 gacgctgcgc caaggccacc atcggcgact cggtgcaggc ttcgacgcgt gcgcccttgt
     2041 cgagcatttc cgggagcgcc ggccacaggt gcgggtcgcg cgcggccagc gtcagcgcgc
     2101 attcggcaag accggtccgt tcgaggtcgg cggcgacgat gctgcccggc acgaacgcgc
     2161 cgcagcgcgc gttcagggcg cgctgcacgc tgttgagcaa ggaacagggc cgggcgtcgc
     2221 cctcggtcat ctgttcgtgg aagtgcttga tgaccgacca ggtgacgctg gtatcggtgc
     2281 tcgcgccgac cgcgctgaga agcaggctgg tcgtcgtgca tccgctgccg agcaccaggc
     2341 ctgccaaggc gatgccgagc gcggcaagcc tgcgcaacgg gttcattcgt tccgttcctc
     2401 gtcgatcaac cttcgcgcct ggggccgggg cggccatcgt ggccttgcta tcggccgcgg
     2461 agcccgatca tgaagggttg ggacgggcgc ggttgtgact tagtgtgtcg atcgtgtcgc
     2521 gccgcggccg atcgacggct gccttgaggg gccccgcgcg ccgcagcagc actatcacga
     2581 tgcacaggtt gaggaggttc caggcgacgc cgttgacgaa ggccgcgtgg taggagccag
     2641 tcagatcgaa caccttgccc gacatccagc cgccgagcgc catgccgaac atcgtgaaca
     2701 tcagcacgga gccgacccgc gcgccggcct cggcgggggc gaagtgctcg cgcacgatga
     2761 tcgcgtacga cggcacgatg ccgccctgga acaggccgaa gagcgcggag atgacgtaca
     2821 gcgagagcag gccgtcgaac ggcaggaaga ggagcaacgc gaggccctgg agcagcgagc
     2881 cgacgagaag tgtgcgcaga ccgccgatgc ggtcgcagat cgcgccggag acgagccggc
     2941 tcacgacgcc gcacgccagc atcagcgaca gcatctcggc gccccgcgcc gcgccgtagc
     3001 cgaggtcgcc gcagtaggcg acgatgtgca cctgcggcat cgacatcgcg acgcagcagg
     3061 acagtccggc gacgcagagc agccgttgtg caacgcgggg ggcgagcccg aacgggcgtg
     3121 ccgaagcgga cggcgaggcc cctgccgtcg ccgccatgac ggcgaccgac ggacgcgggc
     3181 gcatcagcag cgcgagcgcg gtcatgccga gcgcgcagaa gagcgcgagg ccgaggtagg
     3241 tgctgcgcca gccgaaggcc tcgacaaagc gttgcacgac cggaggccag atggcgccac
     3301 cgaaatagtt tccgctcgca cagatcgcga cggcgatgcc gcgccggcgc acgaaccaga
     3361 gcgaggtgtc ggcgatcagg ggtgcgaagg tcgcggaact gccggcgagg ccgatcagca
     3421 ccccgtgcgc gatcgcgaag acccagatgt tgggcgcgag cccggcagcg gcgaatccga
     3481 ggccaaggcc tgccgcgccg atcagcagcg gcagcgtcac gccgaagcga tcggccaggc
     3541 gccccatcag cagtccgccg acgccgaagc cgatcatcgt cagcgtgtac ggcagcgagg
     3601 cgtcggcgcg gtcgacgccg aaatcggcct gcaccgcggg cagcacgacg gcgacgacat
     3661 acatgccgct gctgccgatc gtcatcagcg cgagcgtcac tcccagcctc agcgcagcgt
     3721 atttcgagtc gggttcgtgc gtcatcggtg gtgggggctt cgcgtatcct tcgcgctttc
     3781 gaaagacctg tctctaggaa tcgaattgtc gctgcgactt cggctgatcc tgctggccct
     3841 ggcggtattt ctccctgccc tcgtcgcggc actgtgggtc atcagtcgcg catacgacag
     3901 cgaacgggcc ggcctcgagc gcggcctgcg cgacacgacg cgggcgctcg cgctcgtcat
     3961 cgacggggaa ctgagcaagc gcgcgaccgt cgcgcgcgtc ctcgccgact cgccctatct
     4021 cgacagcgcg ccgaaccttg ccgacgcgga tctgcgccgc ttcg
//
LOCUS       DASVHM010000107         3679 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_656916, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000107 DASVHM010000000
VERSION     DASVHM010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3679
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_656916"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..393)
                     /locus_tag="VF308_02090"
     CDS             complement(<1..393)
                     /locus_tag="VF308_02090"
                     /inference="COORDINATES: protein motif:HMM:NF018513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HEX7435471.1"
                     /translation="MSASAVLILMTVLFLVFGYMGVPVSFSLIAGVLVATAFTPISMQ
                     SMVGQLFHGIDSETLLAVPFFLLVGELMASSDVAHRMIRLSQTLVGHLRGGLAQVVTL
                     FSMFFAGISGSSTADVAVLSRTIARDMDK"
     gene            complement(390..941)
                     /locus_tag="VF308_02095"
     CDS             complement(390..941)
                     /locus_tag="VF308_02095"
                     /inference="COORDINATES: protein motif:HMM:NF016200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HEX7435472.1"
                     /translation="MADFRALILQRHRQLKWKAFDWLEAGLMILCGVCITMVTLAVFL
                     DVLTRTIGAPWLWLQQLTTAFFAWGVFVGMAAATRRNDHFYLTEITKRMTGAPRTTIE
                     ITNRIIVLVVSVLLVWCGTQNALLDLGSYRMPSLIPLTVYTAIVPIAGVLIFLFTLEQ
                     LVCGWQNGFEGPEDRDDTREAVL"
     gene            complement(1003..2010)
                     /locus_tag="VF308_02100"
     CDS             complement(1003..2010)
                     /locus_tag="VF308_02100"
                     /inference="COORDINATES: protein motif:HMM:NF015445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HEX7435473.1"
                     /translation="MAHRTALSTLRAFAFGVLSLAASLAFGQAARQFSFAYDQPPTTA
                     YGIAANIFDAKLKELSGGKMSINQFPGAQLGQEPQMLQKMRAGDIDFVITSTANASTL
                     APQAGVFSLHFLFRDQAHLAKALADPAIAAEFRAMVKDQVQGAQVLGLMTMGLRNMYS
                     KQEVRSVDDIKGKKVRVQATKTEDTHFPAYGAQTVHMPFGDVYTSLQTGVVNIAENGI
                     NVYLANKHYEVAPVLSITEHEANNNCIWVSDKTWNSLTPEQQKWVQAAADEVARTEPA
                     LALKLEKDSETKLKSIGVKVVDNVDKSGFMKAATPVQDQLAAELGPHAVKLLKLVRDV
                     K"
     gene            2152..2835
                     /locus_tag="VF308_02105"
     CDS             2152..2835
                     /locus_tag="VF308_02105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435474.1"
                     /translation="MRMTPLSWALLAVPLAALGAPSTGTLSSSEHPQGAGTAPLPAAT
                     YGLCSGPQNADDFPSSPVPAVETQCEFTQQFHATSPNASYGGSCGGYTVAFGPKGDLK
                     RKWRYLWLKGEWGDAPLTQANCASAHVAAATWGYLCTNAACTTGAWERIAAARTAHGT
                     WNTASQVCYLSVQANTGKKDYQTVSIDIIATQGQGRSAVRKRAKASIYNVQPNGKCPS
                     ATYAPYTPP"
     gene            3011..>3679
                     /locus_tag="VF308_02110"
     CDS             3011..>3679
                     /locus_tag="VF308_02110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7435475.1"
                     /translation="MTDRHDSSRRRALAQLSAGSLATLAPWALQSALAQAKPLTVGVI
                     YVGPRDDFGYNQAQAQAAAEVKKMPGVKVVEEENVPETTAVQKTMTGMIQQDGAKVVF
                     PTSFGYFDPHVLVLAPKFPDVRFSHCGGLWTDKNPKNAGSYFGYVEECQYLNGVIAGH
                     MSKSKKLGFVAAKPIPQVLKNINAFTMGARSVDPKITTTVIFTGEWSMPVKEAEATNS
                     LADQG"
BASE COUNT          624 a         1214 c         1270 g          571 t
ORIGIN      
        1 cttgtccatg tcgcgtgcga tcgtccggct cagcaccgcg acgtcagcgg tcgacgagcc
       61 cgagatgccg gcgaagaaca tggaaaagag cgtcaccacc tgcgccagtc cgccgcgcag
      121 gtggccgacg agcgtctgcg agagccggat catccggtgc gcgacatcgg acgacgccat
      181 cagctcgccg acgaggagga agaacggcac cgcgagcagc gtctcggaat cgatgccgtg
      241 gaacagctgg ccgaccatcg actgcatgct gatcggcgtg aacgcggtcg cgacgagcac
      301 gccggcgatg agcgagaaag agaccggcac gcccatgtag ccgaagacga ggaacagcac
      361 cgtcatcagg atcagcaccg ccgaggcgct cacagcaccg cctcgcgcgt gtcgtcgcga
      421 tcctcgggcc cctcgaagcc gttttgccag ccacagacga gctgctcgag cgtgaagagg
      481 aagatgagca cgccggcgat cggcacgatc gcggtgtaga cggtcagcgg gatcagcgac
      541 ggcatgcggt agctgcccag gtcgagcagc gcgttctgcg tgccgcacca gaccagcagc
      601 accgagacga cgagaacgat gattcggttg gtgatctcga tcgtcgtgcg cggcgcgccg
      661 gtcatccgct tggtgatctc ggtgaggtag aagtggtcgt tgcggcgcgt cgccgcggcc
      721 atgccgacga agacgcccca ggcgaagaac gcggtcgtca actgctgcag ccagagccag
      781 ggcgcgccga tcgttcgggt gaggacgtcg aggaagaccg ccagcgtgac catcgtgatg
      841 cagacgccgc agaggatcat cagtccggcc tcgagccagt cgaaggcctt ccacttgagc
      901 tggcgatggc gttgcaggat cagggcgcgg aagtcggcca tccgtgagtc tcgtcgtcga
      961 tgaagggagc ccgcggccgt gcgcgccgcg ggcggtggcg ggctacttca cgtcgcggac
     1021 cagcttgagc agcttcaccg cgtgcgggcc gagctcggcg gcgagctggt cctggacggg
     1081 ggtggccgct ttcatgaagc cgctcttgtc gacgttgtcg acgaccttga cgccgatcga
     1141 cttcagcttg gtctccgagt ccttctcgag cttgagcgcc agcgccggct cggtcctggc
     1201 gacctcgtcg gctgcggcct gcacccattt ctgctgctcg ggggtgaggc tgttccaggt
     1261 cttgtcgctg acccagatgc agttgttgtt cgcctcgtgc tcggtgatcg acaggaccgg
     1321 cgccacctcg tagtgcttgt tggcgaggta gacgttgatg ccgttctcgg cgatgttgac
     1381 gacgcccgtc tgcagcgatg tgtagacgtc gccgaacggc atgtgcacgg tctgcgcgcc
     1441 gtaggccgga aagtgggtgt cctcggtctt ggttgcctgg acgcgcacct tcttgccctt
     1501 gatgtcgtcg accgacctca cctcctgctt gctgtacatg ttgcgcaggc ccatcgtcat
     1561 gaggccgagc acctgcgcgc cctggacctg gtccttcacc atcgcgcgga actcggcggc
     1621 gatggccggg tcggcgagtg ccttggccag gtgcgcctgg tcgcgaaaga gaaagtggag
     1681 agagaagacg ccggcctgcg gcgccagcgt cgacgcgttc gcggtcgacg tgatgacgaa
     1741 gtcgatgtcg ccggctcgca tcttctgcag catctgcggc tcctggccga gctgggcgcc
     1801 gggaaactgg ttgatgctca tcttgccgcc ggagagctcc ttcagtttgg cgtcgaagat
     1861 gttggcggcg atgccgtagg cggtggtcgg cggctggtcg taggcgaagc tgaactggcg
     1921 ggccgcctgg ccgaaggcca gcgacgcggc gagcgacagc acgccgaacg cgaacgctcg
     1981 caaggtgctc aaggcggtgc gatgtgccat ggtgtctcct ccgatttggt gcaggccaca
     2041 cgtgtactgg caacgcgggc ccggcgcaat tgccggatgc ccggcgttgt ccggacaacc
     2101 ggccgaggga cgagtagcat cggcgcgccg ttccccacgg gagaagacac catgcggatg
     2161 acccccttgt cgtgggccct gctcgccgtc cctcttgccg ccctcggcgc accgtcgacg
     2221 ggcacgctgt cgtcgtcgga acacccgcag ggcgcgggca ccgcgccgct gccggcggcc
     2281 acctacggct tgtgctcggg cccgcagaac gccgatgact tcccgtcgag cccggtgccg
     2341 gcggtcgaga cgcagtgcga gttcacgcag cagttccatg cgacgtcgcc gaacgcgagc
     2401 tacggcggct cgtgcggcgg ctacacggtc gccttcgggc cgaagggcga cctcaagcgc
     2461 aagtggcgct acctctggct gaagggcgag tggggcgacg cgccgctgac gcaggccaac
     2521 tgcgcgagcg cgcacgtcgc ggcggcaacc tggggctacc tgtgcacgaa cgccgcgtgc
     2581 acgaccggtg cgtgggagcg catcgctgcg gcgcgcaccg cgcacggcac ctggaacacg
     2641 gcgagccagg tctgctacct gtcggtgcag gcgaacaccg gcaagaagga ctaccagacc
     2701 gtctcgatcg acatcatcgc gacgcagggg cagggtcggt cggcggtgcg caagcgcgcc
     2761 aaggcgtcga tctacaacgt gcagccgaac ggcaagtgcc cgtcggcgac ctacgcgccg
     2821 tatacaccgc cctaggccga cggcgggtct cctcccttcg cggccttgaa cccggccgcg
     2881 gctcgcgccc cgtcgccgcc tcggcggcgg catcgtccgt ggcacacgtc ttgcagaacg
     2941 tggctggtat accgacgcgt gcaccagagt caggccggca cgcgacacca cccaccacga
     3001 agggaacgcc atgaccgatc gccacgactc cagccgccgc cgtgccctcg cacaactttc
     3061 cgccggatcg ctggcgacgc tcgcgccttg ggcgctgcag tcggcgctgg cgcaggccaa
     3121 gccgctcacc gtcggcgtga tctacgtcgg cccgcgcgac gacttcggct acaaccaggc
     3181 gcaggcgcag gccgccgccg aagtgaagaa gatgcccggc gtcaaggtcg tcgaggaaga
     3241 gaacgtcccc gagacgacgg cggtgcagaa gacgatgacc ggcatgatcc agcaggacgg
     3301 cgccaaggtc gtgttcccga cctcgttcgg ctacttcgac ccgcacgtgc tcgtcctcgc
     3361 gccgaagttt cccgacgtgc gcttctcgca ctgcgggggc ctctggaccg acaagaaccc
     3421 gaagaacgcg ggcagctact tcggctatgt cgaggagtgc cagtacctga acggcgtgat
     3481 cgccggccac atgtcgaaat cgaagaagct cggcttcgtc gccgccaagc cgatcccgca
     3541 ggtgctgaag aacatcaacg ccttcacgat gggcgcgcgc tcggtcgacc cgaagatcac
     3601 gacgacggtg atcttcaccg gcgagtggtc gatgcccgtg aaggaagccg aggcgacgaa
     3661 cagcctcgcc gaccagggc
//
LOCUS       DASVHM010000108         1572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1307008, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000108 DASVHM010000000
VERSION     DASVHM010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1307008"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..196)
                     /locus_tag="VF308_02115"
     CDS             complement(<1..196)
                     /locus_tag="VF308_02115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435476.1"
                     /translation="MGARLWLFALLLVVAGSARAQADYSFYGVLDLSYGRFENSGAIR
                     EHRFNSNSLSASFVGANAKYG"
     gene            complement(244..588)
                     /gene="mrtJ"
                     /locus_tag="VF308_02120"
     CDS             complement(244..588)
                     /gene="mrtJ"
                     /locus_tag="VF308_02120"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070007 - glutamic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="JDVT-CTERM system glutamic-type intramembrane
                     protease"
                     /protein_id="HEX7435477.1"
                     /translation="MLSATTAAIATAGPSVQHAWVLVVLAPLFEEVLFRAGVQDWLSR
                     ATIGRWPAIVGTAVLFAALHVAVSGDPRRMAVALPALVIGGVYARTRRVRDCVVLHAA
                     MNALWLGGLAAI"
     gene            complement(657..>1572)
                     /locus_tag="VF308_02125"
     CDS             complement(657..>1572)
                     /locus_tag="VF308_02125"
                     /inference="COORDINATES: protein motif:HMM:NF012200.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="choice-of-anchor D domain-containing protein"
                     /protein_id="HEX7435478.1"
                     /translation="GVGTFTGALQITSNVAGPPQVVALRGTGLAAAVPVLTWSPAVSS
                     LDFGMVSAGSVSATQSAFLTNQGPGGAKIAFVNAIGPDGPMFAVDAGTCPLDTPLLEG
                     ATCRIDIRFAPGSAGTKTANVQIASTGTFPPALVLSGVGLAGPSPSLTLSATTLAFGA
                     TRVGAQSLPSEIRLSSNGSGAVSITAIEVTGAYAVQSTTCPSMPFTLPVGTDCTVALS
                     FRPTAEGPSTGTLHLTSDASPAASDVSLNGSGEAGPDVGGGGCTIARGASVLDPTLWL
                     LALLAIVTLARRRRRRQAPPHARDGDRP"
BASE COUNT          257 a          540 c          569 g          206 t
ORIGIN      
        1 agccgtactt cgcgttggcg ccgacgaagc tcgccgagag cgaattgctg ttgaagcgat
       61 gctcgcgaat ggcgccgctg ttctcgaatc tgccgtacga caggtcgaga acaccgtaga
      121 acgagtagtc ggcctgcgcg cgcgccgacc cggcgacgac gagcagcagg gcgaacagcc
      181 agagacgtgc tcccaatttg atcgctccct ttctttgtat gtcgacgcgc ttctcgcggc
      241 gcgtcagatc gctgccagcc cgccgagcca gagcgcgttc atggcggcgt ggagaaccac
      301 gcagtcgcgg acccggcgcg tgcgcgcgta gacgccgccg atcaccagcg ccggcaacgc
      361 gacggccatg cgcctcgggt cgccgctgac ggcgacgtgc agggcggcga acaataccgc
      421 ggttcccacg atcgcaggcc accggccgat cgtcgcccgc gacagccagt cctgcacgcc
      481 cgcgcgaaac aagacttcct cgaacaacgg cgcgagcacg accagcaccc aggcgtgctg
      541 cacggagggg ccggccgttg cgatcgccgc cgtcgtcgcc gacagcaacg cggacgagcc
      601 gatccacacc gcgcgctgcg gttctcgcag ccaccctgcg cgaagtgcgg tgagcctcat
      661 gggcgatcgc catcacgcgc atgcggcggc gcctggcgtc gccggcggcg ccgggccagc
      721 gtgacgatgg cgagcagcgc cagcagccac agcgtcggat cgagcaccga tgcgccccgt
      781 gcgatggtgc agccgccgcc gccgacatcc ggcccggcct cgccgctgcc gttgagcgac
      841 acgtcgctgg ccgcgggcga agcgtcgctc gtgaggtgaa gcgttcccgt gctcgggcct
      901 tccgccgtcg gacggaagct gagcgcgacg gtgcagtcgg tgccgaccgg caaggtgaac
      961 ggcatggacg ggcaggtcgt gctctggacg gcataggcgc cggtgacctc gatcgccgtg
     1021 atgctcacgg cgcccgagcc gttgctgctg aggcggattt ccgaaggcag cgattgcgcg
     1081 ccgacgcgcg tggcgccgaa ggccagtgtc gtggccgaga gcgtgagact cgggctcggg
     1141 ccggccaggc ccacgccgga aagcacaagg gcgggcggaa aggttccggt cgatgcgatc
     1201 tgcacgttgg ccgtcttcgt gcctgcggaa cccggcgcga agcggatgtc gatgcgacag
     1261 gtggccccct cgagcagagg cgtgtcgagc gggcaggttc cggcatcgac ggcgaacatc
     1321 ggaccgtccg gcccgatggc gttcacgaag gcgatcttgg cgccgccggg gccctggttc
     1381 gtcaggaatg ccgactgtgt ggccgacacc gaaccggccg agaccatgcc gaagtcaagc
     1441 gacgagaccg cgggcgacca cgtcagcacg gggacagccg ccgccaggcc ggtgccgcga
     1501 agcgccacga cttgcggcgg gccggcgacg ttgctcgtga tctgcagggc accggtgaag
     1561 gtgccgacgc cg
//
LOCUS       DASVHM010000109         4998 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1307057, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000109 DASVHM010000000
VERSION     DASVHM010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4998
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1307057"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..909)
                     /locus_tag="VF308_02130"
     CDS             complement(<1..909)
                     /locus_tag="VF308_02130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP cone domain-containing protein"
                     /protein_id="HEX7435479.1"
                     /translation="MQAVTVPLAAAAAPRLVSSQGSVASAYQGYQILRRNGAVVAFEP
                     NKIAVALMKAFLAVHGTQGAASASVRETVDSLTETVVRALLRSRPGGGTFHIEDVQDH
                     VELGLMRGGHHEVARAYVLYRERRAQERAKQGRPVAVVEPALTVTDRGQRVPLDLQRL
                     QTIIESACAGLGADVQAAPILAETKRNLYDGVPIGEVHKAAILAARTLIEKDPGYTRA
                     TARLLLHTIRREILGEEVLQADMHARYAEYFPLFVKKGVQAELLDEKLLQFDLVKLGN
                     ALKADRDLQFDYLGLQTLYDRYFLHIE"
     gene            complement(1187..1771)
                     /gene="ampD"
                     /locus_tag="VF308_02135"
     CDS             complement(1187..1771)
                     /gene="ampD"
                     /locus_tag="VF308_02135"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006298518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HEX7435480.1"
                     /translation="MKSDWVGGWFGAARRCPSPNCAARPPGSAVSLALVHSISLPPGS
                     YGGDGIERLFTNRLDWDAHPYYEEIRGIEVSAHFLIRRDGELVQFVSCDERAWHAGRS
                     EWRGRTQCNDFSVGIELEGLEGETFEPVQYAVLVELLRALAERYPIDAVAGHEHVAPG
                     RKRDPGPGFDWGRLASDLRWPREHLREVLATPRP"
     gene            complement(1793..3349)
                     /locus_tag="VF308_02140"
     CDS             complement(1793..3349)
                     /locus_tag="VF308_02140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEX7435481.1"
                     /translation="MTTASHFSLLVVDDEPDLRTLYELTLLREGYDMDTAGTVQDALL
                     HLKDRTYSAVITDMRLPDGSGLDVLRFLEEGGRREKAIVITAYGSAENAVDALKAGAY
                     DYLTKPVDLKQFRAVVASALGRGGAPVPTIVPASLPSEQRVPAVARPPRPAPVPSPVA
                     VTSPALARMAGVSAAMQQVRHLIEKVARSMAPVLVSGESGTGKELVARAIHEVSVRGS
                     QPFIPVNCSAIPEQLLEAEFFGYRKGAFTGAADDREGFFQAANGGTLFLDEIGDLPLS
                     MQSKLLRAIQERSVRPVGAVSELPVDVRLLSATHKDLAAEVQAGQFRQDLFYRLNVIE
                     IRVPPLRERLEDLAVVSDRVLDRLAREAGVWPAPQLTREALIHLERYPFPGNVRELEN
                     LLHRAVALSGGELIDVYDLGLPDTVFTDSAAQEIDLLRGNGKAVAPASGAAPEQAPLL
                     PVPEPLPTDLAEYLDEVERDILVRALEHHRYNRTAAGISLGLSLRQIRYRMARLGVNV
                     GTDLTGSDRD"
     gene            complement(3349..>4998)
                     /locus_tag="VF308_02145"
     CDS             complement(3349..>4998)
                     /locus_tag="VF308_02145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX7435482.1"
                     /translation="ERIYRAFIAARAALGVALVVTLGVAGLFGLRPTQLIALVSVAYA
                     ALAISMWLLPRFRRPAAPQALAGLRSRQWIATIGADIVCFTALHLLAVGSSLNYQALL
                     VLPVLMAGILTPRLLALATAAGVTLILLGSAWLGLPSGGDPTLLMTQAGLAGSGFFVV
                     TVLAGELARRLAREEMSARGSLEIARQQAQLNRLVIEEMQDGVLVVDRRGRVRAANPA
                     ARRLLAPAGMSRTAPFQLRGVPAWEALVATVERAFSEAAWPAAGRDVVLQFDAQTHRT
                     LRVRIRFTRRREPQASEEFCVLFLEDVRNMEARSRQEKLAAMGRVSAGIAHEIRNPLA
                     AISQANALLSEDATDPAQRQLMRLVTDNVERLKRIVDDVMEVAPGQVQAVGAIDATAQ
                     VAAACSDWARANGIQLNEQSVLKVELPAEHVGVAFDADHLRRVLVNLLDNAHRHASQA
                     PGAILLRLDAADESRVFLSVQSDGPPIPAEVEPYLFEPFFSTRSRGTGLGLYICRELC
                     ERYGASIDYRLRPYGISPRNGFLVDMRRAALSPAKTSLHLT"
BASE COUNT          834 a         1688 c         1722 g          754 t
ORIGIN      
        1 ttcgatatgc aggaaatagc ggtcgtagag ggtttgcagg ccgaggtagt cgaactgcag
       61 gtcgcgatcg gccttgagcg cgttgccgag cttgaccagg tcgaactgga ggagcttttc
      121 gtcgagcaac tcggcctgca cgcccttctt gacgaagagc ggaaagtact cggcgtagcg
      181 cgcatgcatg tccgcctgca gcacctcttc gccgaggatc tcgcggcgga tcgtgtgcag
      241 cagcaagcgc gcggtggccc gcgtgtagcc cgggtctttt tcgatcagcg ttcgcgcggc
      301 gaggatcgcg gccttgtgga cttcgccgat cggcacgccg tcatacaggt tgcgcttggt
      361 ctcggccagg atcggcgcgg cctgcacgtc ggcgccgaga ccggcacagg ccgattcgat
      421 gatggtttgc agccgttgca ggtcgagcgg cacccgctgg ccccgatcgg tgaccgtcag
      481 tgccggctcg acgaccgcga ccggtcgacc ctgctttgca cgctcctgcg cgcgacgttc
      541 gcggtacagc acataggcgc gtgccacttc gtggtggccg ccgcgcatca gaccgagttc
      601 gacatgatcc tggacgtctt cgatgtggaa ggtgccgccg cccggacgcg agcgcagcag
      661 cgcacgcacg accgtctcgg tcaggctgtc gacggtttcg cgcacgcttg ccgaagccgc
      721 gccctgggtc ccgtggacgg ccaggaacgc cttcatcaat gcgaccgcga tcttgttcgg
      781 ctcgaacgcg acgaccgcgc cgttgcggcg aagaatctga tagccctggt acgccgaggc
      841 cacggagccc tggctggaga ccaggcgcgg cgcggcggcc gcggccagcg gaacggtgac
      901 tgcttgcatt gaattccttg ttgggttcag ggtcgatcga ctcgcgatca tgaagttctg
      961 gcgcgcctcg cgatcaacgg cggccaggct ctcggcgtct cgggacgcac cattcgtggt
     1021 gccgcgcggc cggctgtgga aggcttgcga cggacatggg atgaaaatca ggatagcacg
     1081 atggagacac tatatctggg ggcaagcgag ccttcaagca ctagatatag cgtatgaacc
     1141 ctatacgtgc gtgaactatg cacagcttcg aacgcgaccg acgcactcag ggtcgagggg
     1201 tcgcgaggac ctcgcgcaaa tgctcgcgag gccacctcag atcggacgcg aggcgccccc
     1261 agtcgaagcc cgggccgggg tcgcgcttcc tgcccggcgc gacatgctcg tggccggcga
     1321 ccgcgtcgat cggatagcgt tcggcgagcg cgcgcagcag ctcgaccagc acggcgtact
     1381 ggaccggctc gaaggtctcg ccctcgaggc cttcgagctc gattccgacc gagaaatcgt
     1441 tgcactgcgt gcgcccgcgc cactcggatc ggcctgcatg ccaggcgcgc tcgtcgcagg
     1501 agacgaactg cacgagttca ccgtcgcggc ggatcaggaa atgggccgat acctcgatgc
     1561 cgcgaatctc ctcgtagtac ggatgcgcgt cccagtcgag ccggttcgtg aagaggcgtt
     1621 cgattccatc cccgccgtac gagccgggcg gcaggctgat cgaatggacg agggcaaggc
     1681 tgaccgcgct gccgggcgga cgcgccgcgc agttcggcga gggacagcgt cgcgcagcgc
     1741 cgaaccagcc accgacccag tcgctcttca tcgcgcgtcc ggcagatgaa tctcagtcgc
     1801 gatcggaacc cgtcaggtcg gtgcccacgt tgacgccgag ccgtgccatg cggtagcgga
     1861 tctggcgcag cgacaggccg aggctgatcc cggcagcggt gcggttgtag cgatgatgtt
     1921 cgagggcccg cacgagaatg tcgcgctcga cctcgtcgag gtactcggcg agatcggtcg
     1981 gcaggggctc ggggacgggc aagagcggcg cctgctcggg cgccgcgccc gacgcgggcg
     2041 ccacggcctt gccattgcca cgaaggaggt cgatctcctg ggctgcgcta tccgtgaaca
     2101 cggtgtcggg caggccgagg tcgtaaacgt cgatcagctc gccgcccgac agcgccaccg
     2161 cgcgatggag caggttctcg agctcgcgca cattgcccgg aaacggatag cgctcgaggt
     2221 ggatcaatgc ctcgcgcgtg agttgcggcg ccggccacac gccggcttcg cgggcgaggc
     2281 gatcgagcac gcggtcgctc accacggcga ggtcctcgag ccgctcgcgc aatggcggca
     2341 cgcggatctc gatgacgttg aggcgataga aaaggtcctg gcggaactga cccgcctgca
     2401 cctcggccgc gagatccttg tgggtcgcgc tcagcagccg cacatcgacc ggcaactcgc
     2461 tcaccgcacc caccggccgc accgagcgct cctggatcgc gcgcagcagc ttcgattgca
     2521 tcgacagcgg caggtcgccg atctcgtcga ggaacagcgt gccgccgttg gcagcctgga
     2581 agaaaccctc ccggtcgtcg gcggcgccgg tgaacgcgcc cttgcgataa ccgaagaact
     2641 cggcttcgag caactgctcg ggaattgcgc tgcagttgac cgggatgaaa ggttgcgacc
     2701 cgcgaacgct cacctcgtgg atcgcgcgtg cgacgagctc cttgccggtg ccggattcac
     2761 cgctgaccag gaccggcgcc atgctgcgcg ccaccttctc gatcaggtgg cgcacctgct
     2821 gcatcgccgc ggacacgccc gccatgcgcg cgagcgccgg gctcgtcact gccaccggag
     2881 aaggcaccgg ggccggacgc ggcggacgcg caaccgccgg cacgcgctgc tccgacggca
     2941 ggctcgccgg cacgatcgtc gggaccggcg cgccgccgcg gccgagcgcc gaggcgacga
     3001 cggcgcggaa ctgcttcagg tcgaccggct tggtgaggta gtcgtaggcc ccggccttga
     3061 gcgcgtctac cgcgttctcg gccgacccgt aggccgtgat gacgatggcc ttctcgcgtc
     3121 ggccgccctc ttcgagaaag cgcaggacat cgaggccgct gccgtcgggt agccgcatgt
     3181 cggtgatcac ggcactgtag gtccggtcct tcaggtgcag cagggcgtcc tggaccgtgc
     3241 ccgccgtgtc catgtcgtaa ccctcgcgca gcaaggtgag ctcgtaaagg gtgcgcaggt
     3301 ccggctcgtc gtcgacgacc agaaggctga aatgcgaagc tgttgtcatc aagtcaggtg
     3361 caggctcgtc ttcgcggggc tgagcgccgc gcgccgcatg tcgacgagga acccgttgcg
     3421 cggcgaaatg ccatacggac gcaaacggta atcgatgctt gcaccgtaac gttcgcagag
     3481 ctcgcgacaa atgtacaggc ccaacccggt gccgcgactg cgggtcgaga aaaatggctc
     3541 gaacaaatac ggttcgacct ccgccgggat cggcggaccg tcgctctgca cgctgagaaa
     3601 gacccgggat tcatccgcgg cgtccagacg aagcaggatc gcaccgggcg cctggctggc
     3661 gtggcggtgg gcgttgtcga gcagattgac gaggacgcgg cgcaaatgat ccgcgtcgaa
     3721 ggccacgccc acatgctcgg cgggcagctc gaccttgagc acgctctgct cgttcagctg
     3781 gatcccgttg gcacgcgccc agtcgctgca cgccgcggcg acctgcgcgg tcgcatcgat
     3841 cgccccgacg gcttgcacct gtcccggcgc gacctccatc acatcgtcga cgatgcgctt
     3901 caggcgttcg acgttgtcgg tgaccaggcg catcaactga cgctgcgccg gatcggtcgc
     3961 gtcttcggaa agcagggcgt tcgcctgcga gatcgccgcc aggggattgc ggatctcgtg
     4021 ggcgatgccc gccgagaccc gccccatcgc ggccagcttc tcctgacggc tgcgcgcctc
     4081 catgttgcgg acgtcttcga gaaacagcac gcaaaactcc tcgctcgcct gcggctcgcg
     4141 ccgccgcgtg aaccggatcc gcacgcgcag cgtgcgatgc gtctgcgcgt cgaactgcag
     4201 caccacgtcg cgtccggcag cgggccatgc ggcttcgctg aaggcgcgct ccaccgtcgc
     4261 gacgagcgct tcccaggccg gcacgccgcg cagctgaaag ggcgcggtcc ggctcatgcc
     4321 ggcgggcgcg agaagacgcc gcgcggccgg gttcgccgcg cgcacgcggc cgcggcggtc
     4381 aacgacgaga acgccgtcct gcatctcctc gatcaccagc cggttcaact gggcctgctg
     4441 gcgcgcgatc tcgagactgc cgcgcgcgct catctcttcg cgggcgaggc gccgcgccaa
     4501 ctcgccggcg agcacggtga cgacgaaaaa gccgctcccg gccaagcctg cctgcgtcat
     4561 caacagagtc gggtcacccc cggacggcag acccagccat gcgctgccca acaggatcaa
     4621 cgtcacgccg gccgccgtcg cgagcgccag caggcgcggc gtcaggatcc cggccatcag
     4681 caccggcagc accagcaggg cctggtagtt gaggctcgag ccgaccgcca gcagatgcag
     4741 cgcagtgaag cagacgatgt cggcgccgat ggtcgcgatc cattgccggc tgcgcaggcc
     4801 ggcgagcgcc tggggcgcgg ccggacggcg gaatcgcggc agcaaccaca tgctgatcgc
     4861 aagcgccgcg taggccacgc tgaccagcgc gatgagttgc gtcgggcgca ggccgaaaag
     4921 ccccgccacg ccgagcgtga cgacgagcgc gaccccgagc gcggcgcggg cggcgatgaa
     4981 ggcccgatag atgcgctc
//
LOCUS       DASVHM010000110         9776 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1234198, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000110 DASVHM010000000
VERSION     DASVHM010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 9776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9776
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1234198"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..644)
                     /locus_tag="VF308_02150"
     CDS             complement(<1..644)
                     /locus_tag="VF308_02150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEX7435483.1"
                     /translation="MIRVRGARTHNLKNIDLDIPRNRLVVITGLSGSGKSSLAFDTLY
                     AEGQRRYVESLSAYARQFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEI
                     HDYLRLLFARAGTPYCPLHDLPLQAQSVSQMVDATLALPAETRLMVLAPVVRDRKGEF
                     AELFQDMQAQGYVRFRVDGRTVEAADVPKLKKSEKHDIDVVIDRVRVQPGIEQRL"
     gene            complement(847..2100)
                     /locus_tag="VF308_02155"
     CDS             complement(847..2100)
                     /locus_tag="VF308_02155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435484.1"
                     /translation="MTQASERDGERDAYLREALRHAPDAALGPPAALSNAILRQARSA
                     TTAPAARAAGAQRPGHRSRRRVLDDLWSWLARPVVAAGFASVIAATLVGMMWWDRPMD
                     DAVPQRPDLPAAAPARRAPPVVAAPETLAPETPAAPPVATVPKRETPVASKSVAAGSV
                     TSTEALPREAHDRAKVSTAAPAPAREPEQLAKDTEATLRRAAPQPFPGSSESASEEAM
                     RQRQQAAAPSAKKERATAAAAMAERPFDQPPSNSAGAAQVDSARPVEPPAARLAGRFD
                     AQPGPSPLGALRAALAEQPQRWTWAREDGSAQPLDAALQAWLARLDDATVSPGPQGNA
                     KPGAADEARGNLQAARRDAEGTDASAAPQVLRLLRDGRLHTTLRLRSQAVQVDTIDAP
                     APRWQAPLAPSAGAVLKASMPGPPR"
     gene            complement(2097..2732)
                     /locus_tag="VF308_02160"
     CDS             complement(2097..2732)
                     /locus_tag="VF308_02160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX7435485.1"
                     /translation="MPAEPEPTDDALMTAYARGDTAAFERLYARHQGGLYRFVRRLLG
                     SALAAQTDEVFQDTWLRVVQARARWEPRGATFRTWLFTLAHHRVIDLLRRSGREVALD
                     AFEGEDEEPWEPDATAWQHWPPPPSAAAQSEDLTFWRRAGEKLLQCLDQLPLPQRSAF
                     LLHHDDGLALDEVALALEVGFETAKTRLRYAMSKLRACMGAYLAPLQGPAQ"
     gene            complement(2788..4674)
                     /gene="recQ"
                     /locus_tag="VF308_02165"
     CDS             complement(2788..4674)
                     /gene="recQ"
                     /locus_tag="VF308_02165"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HEX7435486.1"
                     /translation="MPAATASNHADPAHILHEVFGYSAFRGAQAEIVAHVVAGGDALV
                     LMPTGGGKSLCYQVPAIARHGAGRGVAVVVSPLIALMHDQVGALDEAGVHAAFLNSSL
                     EADEARSIEREMMAGRLVLLYAAPERITTPRFLAQLDSLHERGLLSLFAIDEAHCVSQ
                     WGHDFREDYLGLNVLHERYPSVPRIALTATADDLTRADIIERLQLQDARVFISSFDRP
                     NIRYAVVEKDNARAQLLRFIRDEHEGEAGIVYCQSRKKVEETADWLRQEGIAALPYHA
                     GLDADVRKRNQDRFLREEGMVMVATIAFGMGIDKPDVRFVAHLDLPKNIESYYQETGR
                     AGRDGLPADAWMAYGLADVVNQRRMIDESLAGEEFKRGQRGKLDALLALAETHTCRRV
                     RLLAYFGESSQPCSAAQNACDNCLAPPATWDASEAARKALSCIYRFQQNRGQRFGAGH
                     LIDVLRGKPTDKVAQHGHETLSTFGIGADIAETQWRGVLRQLIALGYLRTEGEYNTLE
                     LDASARDVLRGEVQLLLRVPSETARRAKGAKARGGGRAGTKAPPIPLDEPGLARFAAL
                     KAWRAEVARAHNLPAYVVFHDATLAEMARLRPQSLDELAQISGVGAKKLEAYGAEIMQ
                     VLRD"
     gene            4817..5305
                     /gene="ssb"
                     /locus_tag="VF308_02170"
     CDS             4817..5305
                     /gene="ssb"
                     /locus_tag="VF308_02170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEX7435487.1"
                     /translation="MASVNKVIIIGNLGRDPEVRYTPNGAAVCNVSVATTRTWKNKDS
                     GDKVEETEWHRVVFYDRLAEIAGEYLKKGRSVYVEGRLKTRKWQDKDGAEKYSTEIIA
                     EEMKMLGGREGMGGGAEEGGGASSYGERQAPASRPAGAAAAKPAAKSSTGFDNMDDDI
                     PF"
     gene            complement(5333..6628)
                     /locus_tag="VF308_02175"
     CDS             complement(5333..6628)
                     /locus_tag="VF308_02175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX7435488.1"
                     /translation="MKVWQRLFALALLALLALAGLVIALNLRDEGDGTEAAAAGGATD
                     VAAELIARGQYLTRAGDCLGCHTVRGGAPYAGGRGIETPFGTVYTPNLTPDPQTGLGD
                     WTAADFWRALHNGRSRDGRLLYPAFPYPNYTKVARADADAMYAYLRSLPPVPRPNQAH
                     GLAFPFNLQASLAIWRALYFDPGVYKPDPARPPEWNRGAYLVEGLGHCNACHSRRNAL
                     GAPAGPLDFAGGLIPVQNWYAPSLTSADEASVADWDARHVVDLLKTGVSARGMVMGPM
                     TEVVQNGTQYLSDADLAAMTHFLTALPVTRSARPNDAVMAPGEPEQTRGAKLYETHCA
                     QCHGEKGAGVPGAYPALAGSRAVTMASSANLVHVVLQGGFPPGTAGNPRPFGMSPFAT
                     TFSNDDVADLLTYIRSAWGNKGGPVSALEASRFRADVRP"
     gene            complement(6625..7329)
                     /locus_tag="VF308_02180"
     CDS             complement(6625..7329)
                     /locus_tag="VF308_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011801482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEX7435489.1"
                     /translation="MALLLGWLCAFSVPAGAAPKFEDSIAQRVQACTGCHGPQGRAAP
                     DGYYPRIAGKPPVYLYNQLLNFREGRRHYALMTGLVAPLGDAYLREIAGHFASLDVAY
                     PAPQAPQEAPAVVEQGRLLVMQGAPARRIPACVQCHGAAMMGVAPSIPGLLGMPRDYL
                     NAQLGAWKGGSRRAQAPDCMAQIASALSPQDISAVSAWLAAQPALGKPATGLPAPMPL
                     RCGGVSAGNGAEGTPR"
     gene            complement(7383..8027)
                     /locus_tag="VF308_02185"
     CDS             complement(7383..8027)
                     /locus_tag="VF308_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019140537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding negative transcriptional regulator"
                     /protein_id="HEX7435490.1"
                     /translation="MYLPSHFEETRLDVLHQFVLSHPFGLLVTQGGSGIDANGIPFLL
                     DPDGAGGFGTLRAHVARANPVWREARTDTDTLVVFQGPHAYISPAWNASKAEHGKAVP
                     TWNYCMVQARGPLRVMDDAGWVRSLVTRLTERHEAPRSAPWSVDDAPDDYIEMMLRAI
                     VGIEIPLVSLTGKWKVTQNRPLADREGVVRGLGAQGGDAAQALARQVARPGEPS"
     gene            complement(8104..9213)
                     /gene="mnmA"
                     /locus_tag="VF308_02190"
     CDS             complement(8104..9213)
                     /gene="mnmA"
                     /locus_tag="VF308_02190"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008902986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEX7435491.1"
                     /translation="MKSRRIVVGLSGGVDSAVSAHLLKQEGHEVVGVFMKNWEDDDDS
                     GYCSSNADFVDAAAVADVLGIEIEHVNFAADYKDRVFAEFLREYRAGRTPNPDVLCNA
                     EIKFKAFLDHAVERGAEQIATGHYARVRQSDGQFQLLKGLDPLKDQSYFLHRLTQAQL
                     AKTLFPIGELAKTEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYLANEPGPI
                     EDDRGRTIGAHVGLSFYTLGQRKGIGIGGLKERAGARGGSVHEPWFVARKDIATNTLF
                     VVQGHDHPWLLSRSLIADDLSWVAGRAPQSGAFSAKSRYRQADAACTLGREGGETASI
                     ELTFAQPQWAVTPGQSAVLYAGDVCLGGGVIVGSR"
     gene            9345..9509
                     /locus_tag="VF308_02195"
                     /pseudo
     CDS             9345..9509
                     /locus_tag="VF308_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013436212.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
     gene            complement(9510..>9776)
                     /locus_tag="VF308_02200"
     CDS             complement(9510..>9776)
                     /locus_tag="VF308_02200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX7435492.1"
                     /translation="FARPAAGEDVTYLRLAFGGSVGEADPARALDDGIVRTLWLTLPE
                     LRATRHRHRSALVLQCIEDCIAGRRFPLDLVHCDPSLFAPEVKR"
BASE COUNT         1373 a         3287 c         3599 g         1517 t
ORIGIN      
        1 aggcgctgct cgatgcccgg ctgcacgcga acgcggtcga tgacgacgtc gatgtcgtgc
       61 ttttccgatt tcttcagctt cggcacgtcg gccgcctcga cggtgcggcc gtcgacgcga
      121 aagcgcacgt agccttgcgc ctgcatgtcc tggaacagtt cggcgaactc gcccttcctg
      181 tcgcgcacga ccggcgcgag caccatcagg cgcgtttcgg ccggcagggc gagggtcgcg
      241 tcgaccatct ggctgacgct ctgggcctgc agcggaaggt cgtgcagcgg gcaatagggc
      301 gtgccggcgc gcgcgaacag caggcgcagg tagtcgtgga tttcggtgac ggtgccgacg
      361 gtcgagcgcg ggttgtgcga ggtcgccttc tgctcgatcg agatcgcggg cgagaggccc
      421 tcgatcacgt cgacatcggg cttgtccatg agttgcagga actggcgcgc ataggccgag
      481 aggctctcga cgtagcggcg ctggccttcc gcgtacagcg tgtcgaaggc caggctcgac
      541 ttgccggaac ccgagagccc ggtgatcacg acgaggcgat tcctcgggat gtcgagatcg
      601 atgttcttca ggttgtgggt gcgcgcgccg cgaacccgga tcatcggggt cggctgcgga
      661 tcgccggctg cgggggctcc ccgacgcgcg ccgcgcgccc cggcgtcagg ggctgcggcg
      721 ggttcggagg cgtcgggtcg ggcaggcatc gaggcggggc aaaccgaaca tcataacgat
      781 cgctgcccgc gcatgcgcat cgtccctgtc gggggatgac tcgcggtgct gccggcgaac
      841 cgcgcgtcag cgcggcggcc ccggcatgct ggccttcagc acggcgcctg ccgatggcgc
      901 gagtggcgct tgccagcgcg gcgcgggggc gtcgatcgtg tcgacctgga ccgcctggct
      961 gcgcaggcgc agcgtcgtgt gcagtcggcc atcgcgcagc agccgaagga cctgaggcgc
     1021 ggcgctcgca tcggtgcctt cggcgtcgcg ccgggccgcc tggaggttgc cgcgcgcctc
     1081 gtcggcggcg cccggcttcg cgttgccttg gggcccgggc gagaccgtcg cgtcgtcgag
     1141 gcgggcgagc caggcttgca gcgccgcgtc cagcggttgc gcgctgccgt cttcacgcgc
     1201 ccaggtccag cgttgcggct gctcggcgag cgcggcgcgc aaggcaccga gcggcgacgg
     1261 cccaggctgc gcatcgaagc gaccggccag gcgcgcggcg gggggctcga cgggccgggc
     1321 cgaatcgact tgcgccgccc cggctgagtt cgacggcggc tggtcgaaag gccgctcggc
     1381 catcgcggcc gcagctgtgg cacgctcctt cttcgcactc ggcgcggccg cttgctgccg
     1441 ttgtcgcatc gcctcctcgg aggcgctttc ggacgacccg ggaaacggct gcggcgcggc
     1501 acgacgcaga gtcgcttcgg tgtccttggc gagttgttcc ggctctcgag cgggcgcggg
     1561 cgcggccgtc gacaccttgg cacggtcatg cgcctctcgc ggcagggctt cggtcgaagt
     1621 caccgagccg gcggcaacgg acttcgaggc gacgggcgtt tcgcgtttcg gcacggtggc
     1681 gacggggggc gccgcaggtg tctccggcgc cagtgtttca ggcgccgcga ccactggcgg
     1741 cgcgcgcctt gccggcgctg cggcggggag gtccggccgc tgcggcacgg cgtcatccat
     1801 cggccggtcc caccacatca tgccgacgag ggtggctgcg atcacgctgg caaacccggc
     1861 ggccaccaca ggacgtgcca gccatgacca caggtcgtcc agaactcgac gtcgcgaacg
     1921 atgccctggg cgctgcgctc ctgcggcgcg cgctgcggga gccgtcgtcg ccgatcgtgc
     1981 ctggcgcagg atcgcgttgc tgagcgctgc gggcggcccg agcgccgcat ccggcgcatg
     2041 gcgcaacgct tcgcgcaggt aggcgtcgcg ctcgccgtcg cgctccgacg cctgcgtcat
     2101 tgcgcgggcc cctggagcgg cgcgaggtag gcgcccatgc acgcgcgcag cttcgacatc
     2161 gcatagcgca accgggtctt cgcggtttcg aagccgacct cgagggccag cgcgacttca
     2221 tcgagcgcga gcccgtcgtc gtgatgcagc aggaacgcgc tgcgttgcgg cagcggcagt
     2281 tgatcgaggc actggaggag cttttcgccg gcgcggcgcc agaacgtcag gtcttcgctt
     2341 tgcgccgccg cgctcggcgg tggcggccag tgctgccacg ccgtggcgtc gggttcccag
     2401 ggctcttcgt cttcgccttc gaaggcgtcg agcgcgacct cgcggcccga gcggcgcagc
     2461 aggtcgatga cgcggtgatg ggcgagcgtg aagagccagg tgcgaaaggt cgcgccgcgc
     2521 ggctcccagc gcgctcgcgc ctggaccacg cgcagccatg tgtcctggaa cacctcatcg
     2581 gtttgcgcgg cgagcgcgct gccgagcagg cgccgcacga agcggtacag acccccctgg
     2641 tggcgcgcat agagtcgctc gaacgcggcg gtgtcgccgc gggcataggc cgtcatgagc
     2701 gcgtcgtcgg tgggttcggg ttcggctggc acgagggaag tctgcctgat tcgagactga
     2761 tacggccgag gcgccgcaat ggggtcgtca gtcgcgcagc acctgcatga tctccgcacc
     2821 gtaggcctcg agctttttcg cgcccacgcc gctgatctgc gcgagttcgt cgagcgattg
     2881 cggccgcagg cgcgccatct cggccagggt cgcgtcgtgg aacacgacat aggccggcag
     2941 gttgtgcgcg cgtgcgacct cggcgcgcca ggccttgagg gccgcgaagc gggcgagacc
     3001 gggttcgtcg agaggaatcg gcggcgcttt cgtgccggca cgaccgccgc cgcgcgcctt
     3061 ggcgcccttg gcgcgccgcg ccgtctcgct cggcacgcgc agcaacagct gcacctcgcc
     3121 gcgcagcacg tcgcgcgcgc tggcgtcgag ttcgagcgtg ttgtactcgc cttcggtgcg
     3181 caggtagccg agcgcgatca actggcgcag cacgccgcgc cactgggtct cggcgatgtc
     3241 agcgccgatg ccgaaggtgc tgagcgtctc gtgcccgtgc tgcgcgacct tgtcggtggg
     3301 cttgccgcgc aacacgtcga tcaggtgtcc ggcaccgaag cgctggccgc ggttctgctg
     3361 gaaccggtag atgcagctca gcgccttgcg cgccgcttcg ctcgcgtccc aggtggcggg
     3421 cggggcgagg cagttgtcgc aggcgttctg ggcggcgctg cacggctggc tcgactcgcc
     3481 gaaataggcg agcaggcgca cgcgccggca ggtgtgcgtc tcggcgaggg cgagcagcgc
     3541 atcgagcttg ccgcgctggc cgcgcttgaa ctcttcgccg gccaggctct cgtcgatcat
     3601 gcggcgctgg ttgacgacgt cggccaggcc atacgccatc caggcatccg ccggcaggcc
     3661 atcgcggccg gcgcggccgg tttcctggta gtagctctcg atgttcttcg gcagatcgag
     3721 gtgcgcgacg aagcgcacgt cgggcttgtc gatgcccatg ccgaaggcga tcgtcgcgac
     3781 catcaccatg ccctcttcgc gcaggaagcg gtcctggttg cgcttgcgga catcggcgtc
     3841 gagcccggcg tggtacggca gcgcggcgat gccttcctgg cgcagccagt cggcggtctc
     3901 ctcgaccttc ttgcgcgact ggcagtagac gatgccggcc tcgccttcgt gctcgtcgcg
     3961 gatgaagcgc agcaactggg cccgcgcatt gtccttctcg accaccgcat agcggatgtt
     4021 gggccggtcg aagctgctga tgaagacgcg tgcatcctgc agttgcaggc gctcgatgat
     4081 gtcggcgcgc gtgagatcat cggcggtcgc ggtgagcgcg atgcgcggca cgctgggata
     4141 gcgctcgtgc agcacgttga gaccgagata atcctcgcgg aaatcgtggc cccactgact
     4201 cacgcaatgg gcctcgtcga tcgcgaagag actcagcagc ccgcgctcgt gcagcgaatc
     4261 gagctgggcc aggaagcgcg gcgtggtgat gcgctccggc gccgcgtaga gcagcaccag
     4321 gcgcccggcc atcatttcgc gctcgatcga tcgggcctcg tcggcctcga gcgaggagtt
     4381 gaggaacgcg gcatggacgc cggcttcgtc gagggcgccg acctggtcgt gcatcagcgc
     4441 gatcagcggg ctcacgacga ccgccacgcc ccgcccggcc ccatgccgcg cgattgcggg
     4501 cacctggtag cacaggctct tgccgcctcc ggtgggcatc agcacgaggg cgtcgccgcc
     4561 ggcgaccacg tgcgcgacga tctcggcctg cgcacctcgg aatgcgctgt agccgaagac
     4621 ttcgtggagg atgtgcgcgg ggtcggcgtg gtttgaagcg gtggcggcgg gcatggcggg
     4681 gggtgtcggg gcccggcatg ttacggcaca gtcgcgggcc ggtccccgcc ttcggggtta
     4741 gcgccttcag ggcaacggcg ccgccgggcg cggtcgcata atccgtgcaa cccgttttac
     4801 ggttcaggag cgcgtcatgg cctcggtcaa caaagtcatc atcatcggca acctcggtcg
     4861 cgatcccgag gtgcgttaca cgccgaacgg cgccgcggtc tgcaacgtca gcgtcgcgac
     4921 gacgcggacc tggaagaaca aggattccgg cgacaaggtc gaggagaccg aatggcaccg
     4981 cgtcgttttc tacgaccgcc tcgccgagat cgccggcgaa tacctcaaga agggccgctc
     5041 ggtctacgtc gaggggcgcc tgaagacgcg caagtggcag gacaaggacg gcgccgagaa
     5101 gtacagcacc gagatcatcg ccgaggagat gaagatgctc ggcggccgcg aaggcatggg
     5161 cggcggagcc gaggaaggtg gcggcgcttc gagctatggc gaacggcagg cgcctgcgtc
     5221 gcgtccggcc ggcgcagcgg ccgcgaaacc ggcggccaag tcgtcgaccg gcttcgacaa
     5281 tatggacgac gacattccct tctagaatgc tggccgcggg cgcgggtgcc tctcaaggcc
     5341 gcacgtcggc ccgaaagcgg ctcgcctcga gggccgaaac tggcccgccc ttgttgcccc
     5401 aggcgctgcg gatgtaggtc agcaggtcgg cgacatcgtc gttgctgaac gtcgtcgcga
     5461 atggcgacat tccgaacgga cgcggattgc cggcggtgcc gggcggaaag ccgccctgaa
     5521 gcaccacgtg aacgaggttc gccgacgaag ccatcgtcac cgcgcggctg ccggccagcg
     5581 ccgggtatgc accgggcacc cctgcgcctt tctcgccgtg gcattgcgcg cagtgggtct
     5641 cgtagagctt cgcaccgcgc gtctgctcag gctcgccggg cgccatgacg gcgtcgttcg
     5701 gccgtgcgga gcgcgtcacc ggcaaggccg tcaggaaatg cgtcatcgcg gcgagatcgg
     5761 cgtcggacag gtattgggtg ccgttctgca ccacttccgt catcgggccc atcaccatcc
     5821 cgcgcgccga cacgccggtc ttgaggaggt cgacgacgtg gcgcgcgtcc cagtcggcca
     5881 cgctcgcctc gtcggccgag gtgagcgacg gcgcatacca gttctgcacc gggatcagtc
     5941 cgccggcgaa gtcgagcggg cccgcagggg cgccgagggc gttgcggcgc gaatggcagg
     6001 cgttgcagtg gccgagccct tcgaccaggt acgcgccgcg attccactcc ggcggccgtg
     6061 ccgggtcggg cttgtagacg ccggggtcga agtagagcgc gcgccagatc gcgagcgagg
     6121 cctgcaggtt gaaggggaag gcgagcccgt gcgcctggtt cggccgtggc accggcggca
     6181 ggctgcgcag gtaggcatac atcgcgtcgg cgtcggcgcg cgcgaccttc gtgtagttgg
     6241 ggtacgggaa tgccgggtag agcaagcggc cgtcgcgcga gcgcccgttg tgcagggcgc
     6301 gccagaagtc ggcggcggtc cagtcgccga ggccggtctg cgggtcgggg gtcaggttgg
     6361 gcgtatagac ggtgccgaac ggcgtttcga tgccgcggcc gccggcgtag ggcgcgccgc
     6421 cgcgcacggt gtgacagccg aggcagtccc cggctcgggt caggtattgg ccgcgggcga
     6481 tcagctcggc cgcaacgtcg gtcgcgccgc cggccgccgc agcctcggtg ccgtcgcctt
     6541 cgtcgcgcag gttgagcgcg atgaccagcc cggcgagcgc gagcagcgcc agcagggcga
     6601 gtgcgaatag acgctgccac accttcatcg gggtgtgccc tcggccccat tgccggcgct
     6661 cacgccgccg cagcgcagcg gcatcggcgc gggcagcccg gtcgccggct tgcccagcgc
     6721 cggttgggcc gcgagccagg cggacacggc actgatgtcc tgcgggctca gggcgctcgc
     6781 gatctgcgcc atgcagtccg gcgcctgggc gcgccggctg ccgcctttcc atgcgccgag
     6841 ctgggcattg aggtagtcgc gcggcatgcc gagcaagccc gggatcgagg gcgccacacc
     6901 catcatcgct gcgccatggc actgcacgca ggcggggatg cgacgcgcgg gagcgccctg
     6961 catcacgagc aggcgcccct gttcgaccac cgccggcgcc tcctgcggcg cctggggcgc
     7021 ggggtaggcc acatcgaggc tcgcgaagtg gccggcgatc tcgcgcaggt aggcgtcgcc
     7081 cagcggggcg accagtccgg tcatcagcgc gtagtgacgc cggccttcgc gaaagttgag
     7141 cagctggttg tagaggtaga ccggcggctt gccggcgatg cgcgggtagt agccgtcggg
     7201 ggcggcgcgg ccttgcgggc cgtggcagcc ggtgcaggcc tggacgcgct gcgcgatcga
     7261 atcctcgaac ttcggcgccg cgccggccgg cactgaaaag gcgcaaagcc agcccagcaa
     7321 cagcgccatg cgaatgcccg cgcggcgggc ccgggtggcg gcggcaagcg ccgtgccggc
     7381 tgtcaactcg gctcgccggg ccgagccact tgccgggcca gcgcctgcgc agcgtctcca
     7441 ccctgcgcgc cgaggccgcg aaccacgccc tcgcgatccg cgagcggccg gttctgggtc
     7501 accttccatt tgccggtgag cgagacgagc ggaatctcga tgccgacgat cgcccgcagc
     7561 atcatctcga tgtagtcgtc gggagcgtcg tcgacggacc acggcgccga gcgcggcgct
     7621 tcgtggcgtt cggtcagccg cgtcaccaga ctgcggaccc agcccgcatc gtccatcacg
     7681 cgcagcggcc cgcgcgcctg caccatgcag tagttccagg tcgggaccgc cttgccatgc
     7741 tcggccttgc tcgcgttcca ggccggcgag atgtatgcgt gcggaccctg gaacacgacg
     7801 agtgtgtcgg tgtcggtccg cgcctcgcgc cagaccggat tggcacgggc gacatgggcg
     7861 cgcagcgtgc cgaagccgcc ggcgccgtcc ggatcgagca ggaacgggat gccgttcgca
     7921 tcgatacccg agccgccttg cgtcacgagg agtccgaacg gatggctcag cacgaactgg
     7981 tgcaacacgt cgaggcgtgt ttcttcgaag tgcgagggca ggtacatcgg tcttccggtc
     8041 aggggtgcgg gattcttctt cgttcttctt cgcgcgatcg caccttcgag tatgccgcgc
     8101 gcgctatcgc gagccgacga tgacgccgcc gccgagacac acgtcgccgg cgtagagcac
     8161 cgcggactgg cccggcgtca ccgcccattg gggctgggcg aacgtcagct cgatcgatgc
     8221 cgtttcaccc ccttcgcgcc cgagggtgca ggccgcatcg gcttgccgat agcggctctt
     8281 ggccgagaac gccccggatt gcggcgcgcg ccctgcgacc cagctcaaat cgtcggcaat
     8341 gagcgatcgc gacaacagcc aagggtggtc gtggccctgc acgacgaaga gcgtgttcgt
     8401 cgcgatgtcc ttgcgcgcga cgaaccaggg ctcgtggacg ctgccgccgc gcgcccctgc
     8461 ccgctccttc aggccgccga tgccgatgcc cttgcgctgg ccgagcgtgt agaagctcag
     8521 tcccacgtgc gcgccgatgg tccggccgcg gtcgtcctcg atcgggcccg gctcgttggc
     8581 caggtagcgg ttcaggaatt cgcggaacgg ccgttcgccg atgaagcaga tgccggtcga
     8641 gtccttcttc ttcgcattcg gaagaccgat ctccgccgcg atccggcgca cttcggtctt
     8701 cgccagttcg ccgatcggaa agagcgtctt tgcgagctgg gcctgggtca ggcggtgcag
     8761 gaaatagctc tggtccttga gcgggtcgag gcccttgagc aactggaact ggccgtccga
     8821 ttggcggacc cgggcgtagt ggccggtcgc gatctgctcg gcgccgcgtt cgacggcgtg
     8881 gtcgaggaaa gccttgaatt tgatctcggc gttgcagagc acgtcggggt tcggtgtgcg
     8941 gccggcccgg tattcgcgca ggaactcggc gaagacgcgg tccttgtagt cggcggcgaa
     9001 gttgacatgc tcgatctcga tgccgaggac atcggccacc gcggcggcat cgacgaaatc
     9061 ggcgttcgag gagcagtacc ccgaatcgtc gtcgtcctcc cagttcttca tgaagacgcc
     9121 gacgacctcg tggccctcct gcttgagcag gtgcgcgctg accgcggaat cgacaccgcc
     9181 ggacaggccg accacgatgc gccgggattt catcgggctc aattttaggc ggcgccttgc
     9241 gccgcagcgc cgcggggtgt catctgcgcg acttcggtcg gcgcgggtcc tcgcctacca
     9301 ttgcgctgcc ggtatccgca tttgtgcggg ccggcacacg ccctgaaggc gtgagcaccg
     9361 gcgtcagcgc ggccgatcgc gtgacaacgc cgcgatcgcc gacgcggcag tgccggccga
     9421 cctcgtcagc cccggccacg tgtttccgct gcgcgcgggc cgcggtgccg tgcaaattga
     9481 tgaaccctga cgggacgatg gcgcgcggtc tacctcttga cttcgggcgc gaacaggctc
     9541 gggtcgcagt gcacgaggtc gagcgggaag cgccggccgg cgatgcagtc ctcgatgcat
     9601 tgcagcacga gtgcgctgcg atgccggtgg cgcgtcgcac ggagctcggg cagggtcagc
     9661 cacagcgtgc gcacgatgcc gtcgtcgagc gcgcgcgccg gatcggcctc gcccacgctg
     9721 ccgccgaagg cgaggcgcag gtaggtcacg tcttcgccgg cggccggccg cgcgaa
//
LOCUS       DASVHM010000111         1680 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1162207, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000111 DASVHM010000000
VERSION     DASVHM010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1162207"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..748
                     /locus_tag="VF308_02205"
     CDS             2..748
                     /locus_tag="VF308_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018315124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7435493.1"
                     /translation="MTMKDKIAVVTGAASGIGRATAQALAEAGATVVVADIDPDKGEA
                     AAAAIRQKGDKAEFMPVDMTDAASIGAFAAALQTKFGPVDILVNGAGWGRTAPFWEGT
                     PEFWSKLVALNLVGPMMLAKALLPAMMERGGGKIVNIASDAGRVGSLGETVYSGAKGG
                     LIAFTKSLARETARYMINVNCVCPGPTDTPLMAAVPDKVKEALTKAVPFRRLGKPEEV
                     ADAVVFFASDRASYITGQVLSVSGGLTMAG"
     gene            777..1595
                     /locus_tag="VF308_02210"
     CDS             777..1595
                     /locus_tag="VF308_02210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase family protein"
                     /protein_id="HEX7435494.1"
                     /translation="MKRIQLAGYRATHFGYAVSGKVATITLNRPDRKNPLTFDSYGEL
                     RDLFREMVYATDVKAVVFAGEGGNFCSGGDVHEIIGPLVAMKMPELLEFTRMTGDMVK
                     AMRECPQPIVAAIDGVCTGAGAMIACASDLRCATARSKLAFLFVRVGLAGADMGACTL
                     LPRLIGLSRAADLLYSGRVVGGEEAERFGFYNRLIAPESLLGEATAMAQSLADGPTFG
                     HAMTKKMLWQEWSSGLGESIEAEAQAQAICMQTQDFERAYHAFVAKGKPVFEGN"
BASE COUNT          294 a          546 c          584 g          256 t
ORIGIN      
        1 catgaccatg aaggacaaga tcgccgtcgt cacaggggcc gcctcgggca tcggccgcgc
       61 cacggcgcag gcgctggccg aggccggagc gacggttgtc gtcgccgaca tcgaccccga
      121 caagggcgag gccgcggccg cggcgatccg gcagaaaggc gacaaggccg aattcatgcc
      181 ggtcgacatg acagacgcgg catcgatcgg cgcattcgcc gcggcgctgc agacgaagtt
      241 cggcccggtc gatatcctcg tcaacggcgc cggctggggc cgcacggcac ccttctggga
      301 gggcacgccc gagttctgga gcaagctggt cgcgctcaac ctggtcggcc cgatgatgct
      361 tgccaaggcg ctgctgccgg cgatgatgga gcgcggcggc ggcaagatcg tcaacatcgc
      421 cagcgacgcc gggcgcgtgg gcagcctcgg cgagacggtg tattcgggtg ccaagggcgg
      481 cctcatcgcc ttcaccaaat cgctggcgcg cgagactgcg cgctacatga tcaacgtcaa
      541 ttgcgtctgc cccggcccca ccgacacgcc gctgatggcg gcggtgcccg acaaggtcaa
      601 ggaagccctc accaaggccg ttccattccg ccgcctcggc aagcccgagg aagtggcgga
      661 cgccgtcgtg ttcttcgcca gcgaccgcgc cagctacatc accgggcagg tgctcagcgt
      721 cagcggcggc ttgacgatgg caggctgatc caattgcaac caccaggaga aaatcgatga
      781 aacgcatcca gcttgccggc taccgggcca cccacttcgg ctacgcggtg tcgggcaagg
      841 tcgccacgat cacgctgaac cggccggatc gaaagaaccc gctgaccttc gactcgtacg
      901 gcgagttgcg cgacctgttc cgcgagatgg tctacgccac cgacgtcaag gcggtcgtgt
      961 tcgccggcga gggcggcaac ttctgctcgg gcggcgacgt gcacgagatc atcggtccgc
     1021 tggtcgcgat gaagatgccc gagctgctcg aattcacgcg catgacgggc gacatggtca
     1081 aggcgatgcg cgaatgcccg cagccgatcg tcgcggcgat cgacggcgtg tgcaccggcg
     1141 ccggcgcgat gatcgcctgc gcgtcggacc tgcgctgcgc gaccgcgcgc agcaagctcg
     1201 cgtttctgtt cgtgcgcgtc ggcctggccg gcgccgacat gggcgcatgc acgttgctgc
     1261 cgcggttgat cgggctctcg cgtgcggccg atctgctgta cagcggccgc gtcgtcggcg
     1321 gcgaggaggc cgagcgtttc ggcttctaca accggctgat cgcgcccgag tcgctgctcg
     1381 gcgaggcgac cgcgatggcg cagagcctgg ccgacggccc gaccttcggc catgcgatga
     1441 cgaagaagat gctgtggcag gaatggagct cgggcctcgg cgaatcgatc gaggccgagg
     1501 cgcaggcgca ggcgatctgc atgcagacgc aggacttcga gcgcgcctac cacgccttcg
     1561 tcgccaaggg caagccggtg ttcgagggca actagtctct agacagttca gttttgacag
     1621 atcgtgcgaa gacttcaatg ggtaacagcc atggcgggaa tgatgttgaa gcgcgtgagc
//
LOCUS       DASVHM010000112         1814 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_225130, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000112 DASVHM010000000
VERSION     DASVHM010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225130"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            14..1324
                     /locus_tag="VF308_02215"
     CDS             14..1324
                     /locus_tag="VF308_02215"
                     /EC_number="2.5.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008906694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase"
                     /protein_id="HEX7435495.1"
                     /translation="MPGSSDPGFDTLAVHAGAAPDPVTGARAVPIHLTTSFVFENSEH
                     AASLFNMERSGHVYSRISNPTNAVLEERVAALEGGVGAIATASGQAALHLAIATLAGA
                     GSHIVSSSALYGGSHNLLHYTLARFGISTTFVKPGDHAAWRAAIRPETRLLFGETLGN
                     PGLDVLDIPAVAAIAHESGLPLLVDSTFTTPWLMKPFDHGADLVFHSATKFLSGHGTV
                     IGGVLVDSGQFDWYAAHAKSGRFAELAEPYEGFHGMVFSEESSVGAFLLRARREGLRD
                     FGACMSPHTAWLILQGIETLPLRMARHIENTRKVVGFLAAHPMVASVAYPELDSHPDH
                     ALAQLLLPRGAGSVFSFNLRGSRPQGRAFIEALKIFSHLANVGDIRSLVIHPASTTHF
                     RMDDAALAQAGITAGTIRLSIGLEDAADLIDDLKRALGVGKKAG"
     gene            1324..1776
                     /locus_tag="VF308_02220"
     CDS             1324..1776
                     /locus_tag="VF308_02220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019141416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX7435496.1"
                     /translation="MNLIVDGAEGPQRAYAYSGGKPFERELPAVVFVHGALHDHSVWT
                     LLARWFAHHGHAVLAPDLPGHARSEGPPRASVEALAAWLLSLLDAAGVEKAALVGHSM
                     GSLVALEAAALAQAGITAGTIRLSIGLEDAADLIDDLKRALGVAKKAG"
BASE COUNT          265 a          673 c          602 g          274 t
ORIGIN      
        1 tccgaagacc cccatgcccg gctcatccga ccccggcttc gacacgctcg cggtgcacgc
       61 cggcgccgcg cccgacccgg tgaccggcgc gcgtgcggtg ccgatccacc tgaccacgtc
      121 gttcgtgttc gagaacagcg agcacgccgc atcgctgttc aacatggaac gctcggggca
      181 tgtgtacagc cggatctcga atccgaccaa tgccgtgctc gaggaaaggg ttgcggcgct
      241 cgagggcggc gtcggcgcga tcgccacggc gagcggccag gccgcgctgc acctcgcgat
      301 cgctacgctg gccggggccg gttcgcacat cgtcagttcg agcgccctgt acggcggctc
      361 gcacaacctg ctgcactaca cgctggcgcg cttcggcatc tcgaccacgt tcgtcaagcc
      421 cggcgaccac gccgcctggc gcgcggcgat ccgcccggaa acgcgcctcc tgttcggcga
      481 aacgctcggc aatcccggcc tcgacgtgct cgacatcccg gcggtcgcgg cgatcgccca
      541 cgagagcggc ctgcccctgc tggtggattc gaccttcacg acgccgtggc tgatgaagcc
      601 cttcgaccac ggcgccgacc tcgtcttcca ttcggcgacc aagttcctgt ccggccatgg
      661 caccgtgatc ggcggcgtgc tcgtcgacag cggccagttc gattggtacg ccgcccacgc
      721 gaaatcgggc cgcttcgcgg agctcgccga gccttacgaa ggcttccacg gcatggtctt
      781 cagcgaggaa agcagcgtcg gcgcgttcct gctgcgcgcg cgccgcgagg gcctgcgcga
      841 cttcggcgcc tgcatgagcc cgcacaccgc atggctcatc ctgcagggca tcgagaccct
      901 gccgctgcgc atggcgcggc acatcgagaa cacgcgcaag gtggtcggct ttctggccgc
      961 gcatccgatg gtcgcgagcg tggcctatcc ggaactcgac tcgcaccccg accacgccct
     1021 cgcccagctt ctgctcccgc gcggcgcggg gtcggtcttc agcttcaacc tgcgcggctc
     1081 ccggccgcag ggccgggcct tcatcgaagc cctgaagatc ttttcgcacc tcgccaacgt
     1141 cggcgatatc cgctcgctcg tgatccaccc ggcctcgacc acccacttcc gcatggacga
     1201 cgccgcactc gcacaggccg gcatcacggc cggcacgatc cgcctctcga tcggcctgga
     1261 agatgccgcc gacctgatcg acgacctgaa gcgggccctc ggcgtgggga agaaggccgg
     1321 ctgatgaacc tgatcgtcga cggggcggag gggccgcagc gcgcctatgc gtacagcggt
     1381 ggaaagcctt tcgagcgcga gctcccggcg gtcgtcttcg tgcacggggc gctgcacgac
     1441 cacagcgtct ggaccctgct cgcccgctgg ttcgcgcatc acggccatgc ggtgctcgcg
     1501 cccgacctgc ccggccatgc gcgcagcgag ggcccgccgc gggcgagcgt cgaagcgctc
     1561 gcggcatggc tgttgtcctt gctcgacgcg gccggcgtcg aaaaggcggc gctggtcggc
     1621 cacagcatgg gttcgctcgt cgccctcgaa gcggccgcgc tcgcacaggc cggtatcacg
     1681 gccggcacga tccgcctctc gatcggcctg gaagacgccg ccgacctgat cgacgacttg
     1741 aagcgggccc tcggcgtggc gaagaaggcc ggctgatgga cctgatcgtc gaggggccgg
     1801 aggggccgca gcgc
//
LOCUS       DASVHM010000113         5220 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_657977, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000113 DASVHM010000000
VERSION     DASVHM010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5220
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_657977"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..441)
                     /locus_tag="VF308_02225"
     CDS             complement(<1..441)
                     /locus_tag="VF308_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX7435497.1"
                     /translation="MQHIKLGRTGLDVSRLCLGCMSYGEPDRGAHTWTLGEAASRPFL
                     KKALDLGINFFDTANVYSAGSSEEIVGRALLEYARRGEVVLATKVNGRMHKGPNGAGL
                     SRKAIFAAIDASLKRLGTDFVDLYQIHRWDPAVPIEETIEALNDV"
     gene            complement(1002..3212)
                     /locus_tag="VF308_02230"
     CDS             complement(1002..3212)
                     /locus_tag="VF308_02230"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEX7435498.1"
                     /translation="MSTSTLESSITADEIIAPGTVIELAFGAPVDPQSAQAAIRVMRG
                     CEQLRAGIELAKRGRGVTVRLDEATVGACHLVVSELLGTKGERLVERHRIAFSVLPIS
                     GKVPDNLRVEHAVRLFIDDLQVVRLAPGEKRSEGHVDVVKAVHRTRGTAVELAFDERG
                     AKVDIGKRLGELEARRAARFGRLHETLFQRIEKAKDSDRIDIVVWPRIVLAAAPYEKP
                     ADRRSIEPPDGEKKVAVALRKSSAALRAALKRAKIGLAREARSDEGVPCVRATATVAQ
                     IRRLAGNKAIGAIHFDDPTAINDLGDSIAVARSDRAHLAGFTGAGIRVAVWEDGPSVT
                     TNLSFAGRFTTSPPASTHAWLTSAIVKNTESGKPHGHAPGCDLFSANSAGTDALRWAV
                     RDQHCTVVSQSFHRSTEPGGSGLQSDDLLKDWLALRWPYPTISQAAGNFWLGDDDAIS
                     PPEDEFVNHKGFNSLALGNHDDTAAAMSGDSVFRNPTSTHGDRELPELAANGTGVSAN
                     GQTKSGTSFAAPAAAGVIALLQDVDSVLCSWPEGCRAILMASAGRNVRGGTWWQDVVN
                     RVDGRDGVGAVDAQAGVAIAQQRRFRDAPATRRGWDVGTISSSVIGSDGLATFRYHVT
                     VPNLIFFPTVKVALAWDSAVTSSGDTATASTLTVDLDLLVRDSHGTQVAAAASWDNSY
                     EVVEFAAHAGESYDIVIRRWSGTDSVWYGVAWTVTGVSIFSQFDRSAVLSLASD"
     gene            3493..>5220
                     /locus_tag="VF308_02235"
     CDS             3493..>5220
                     /locus_tag="VF308_02235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435499.1"
                     /translation="MAERISDSKPEGNDRNSYKLELVGLTAASDRPNLAVQVLDAANA
                     VLHTQPVQADGSFKIPPAVLKRANRVTIGTADEKGGVQADASVSYRASEFAAQLKDGT
                     LALAEGTWSRFKFQWVCVSGKVQACWRRPWWYDSIITAATTVKGRASTQARGLSAASS
                     AALASLQERNTPSLNDLLVWPFRCATVCLGSVEVYRRTCCCWPIVYADPRIDDLIRDL
                     ENYVERLPKLPPPKRVFPPPPPPPGDPLQTPFFKGGALNELALNATQDLHALHAMPRE
                     QAAQYINSRAYLFHRLCSCSSASKVGSGTIQPDGSFNICWHEPLHLLLPNCYEQYAYV
                     VKQTIGGSTTTIYDGLAAGAWYGAGDHPTLTSYNGLAFTCNETGSGDGNAEVFLDLIG
                     DTESHELTTPASTGWDRVATPNATSGLLFPNIGPNNSHLRNLGGGIELKFVFTLGMRD
                     PAVGAHYYRVSVCEADANGNPTGSRYYYGDGLAWEKIVGADIVPESLGPVTVGSEANL
                     YRIPYSDEPWVGSVRHHALVNTMIAALNVPADTPANLALPAINHLITLEVFDAAGARL
                     RPLGTPASGQ"
BASE COUNT          825 a         1813 c         1772 g          810 t
ORIGIN      
        1 gacgtcgttc agcgcttcga tcgtctcctc gatcggcacg gccgggtccc agcgatggat
       61 ctggtacagg tcgacgaagt cggtgccgag gcgtttcagg ctggcgtcga tcgccgcgaa
      121 gatcgccttc cgcgacaggc ccgcgccgtt cggtcccttg tgcatccggc cgttgacctt
      181 ggtcgcgagc acgacctcgc cgcgccgcgc gtactcgagc agcgcccggc cgacgatctc
      241 ctcgctcgag ccggcggaat acacgttggc ggtgtcgaag aagttgatgc cgaggtcgag
      301 cgccttcttc aggaacggcc ggctcgccgc ctcgccgagg gtccaggtgt gggcgccgcg
      361 gtccggctcg ccgtagctca tgcagccgag acagaggcgc gagacgtcga ggccggtgcg
      421 gccgagcttg atgtgctgca tggcgcagtc taggcgggcg acgcctttcc cgcaggcacg
      481 cccgacccga ggaactccgt gccaagagca ggggcgatca agaagacgct gtgaacaatc
      541 gacatgggtc cgcatcgtcc gcttccggcg ccgtgcgcaa gcgatcgtaa acggcgtaca
      601 agcggcgcgc ctcttccttg tcgcgcatcc gacaagcgaa agcggcgtag ttcttccaag
      661 tggccggcag cccgatccgc ctcgactccg agtcccggaa gccttgcttc atcaaggacc
      721 aatcaaccgc cgagtttcga agactcaacc tcgtaggcgc gcgaaaggct cgctcataca
      781 gcctggcata catggtggcg cccagcagtg atgcctcgtg cgcgtctgtg aacaagacct
      841 gccttcggtc cgtgggggac gcaagtcacc gggtatgtcg gttcgagccg tcgccgaaca
      901 tggcatcgag cccagcccct ggccgaggcc gggcaccggc gtccttaggg cgatcgacgc
      961 tgccgccgtg ccggcaatac ggttcgtccg ctcttgcgcg ctcagtcgct ggccagcgag
     1021 agcaccgccg agcggtcgaa ctgcgaaaag atcgacacgc cggtgacggt ccaggcgacg
     1081 ccgtaccaga cgctgtcggt gccggaccag cggcggatga cgatgtcgta gctctcgccg
     1141 gcatgcgccg cgaactcgac cacctcgtag ctgttgtccc acgacgcggc cgcggccacc
     1201 tgcgtgccgt ggctgtcgcg cacgagcagg tcgaggtcga cggtgagcgt cgacgccgtc
     1261 gccgtgtcgc ccgacgaggt cacggcgctg tcccacgcca gcgcgacctt caccgtcggg
     1321 aagaagatca ggttcggcac cgtcacgtga tagcggaacg tcgccagccc gtcgctgccg
     1381 atgacgctcg acgagatcgt gccgacgtcc cagccgcgcc gcgtcgccgg cgcgtcgcga
     1441 aagcggcgct gctgggcgat cgcgacgccg gcctgggcat cgaccgcgcc gacgccgtcg
     1501 cggccgtcga cgcggttgac gacgtcctgc caccaggtgc cgccgcgaac gttgcggccg
     1561 gccgaggcca tcaggatcgc ccgacagcct tccggccacg agcagaggac gctgtcgacg
     1621 tcctgcagca gcgcgatgac tccggcggca gccggggccg cgaaactggt gcccgacttc
     1681 gtctggccgt tggccgagac accggtgccg ttggcggcga gctcgggcag ctcgcgatcg
     1741 ccatgggtcg aggtcgggtt gcggaagacc gagtcgcccg acatcgccgc cgccgtgtcg
     1801 tcgtgattgc cgagcgcgag cgagttgaag cccttgtggt tcacgaactc gtcttcgggc
     1861 gggctgatgg cgtcgtcgtc gccgagccag aagttgccgg ccgcctgaga gatcgtcgga
     1921 tagggccagc gcaatgccag ccagtccttc agcaggtcgt cggattgcag gcccgatccg
     1981 ccgggctcgg tgctgcggtg aaagctctgg ctcaccacgg tgcaatgctg atcgcgcacc
     2041 gcccagcgca gggcgtcggt gccggcgctg tttgccgaaa acaggtcgca gcccggcgcg
     2101 tgcccgtgcg gctttccgga ctcggtgttc ttgacgatcg ccgaggtcag ccaggcgtgg
     2161 gtgctggccg gcggcgaggt cgtgaagcgg ccggcgaagg agaggttggt cgtgacgctc
     2221 ggcccgtcct cccagactgc gacgcggatg ccggcgccgg tgaaccctgc caggtgggca
     2281 cggtccgagc gcgcgacggc gatcgaatcg ccgaggtcgt tgatcgcggt cgggtcgtcg
     2341 aagtggatcg cgccgatggc cttgttcccg gccaagcggc ggatctgcgc gaccgtcgcg
     2401 gtcgcgcgca cgcagggcac gccttcgtcg ctgcgcgctt ccctggccaa gccgatcttc
     2461 gcgcgcttca gggcggcgcg cagcgcggcc gacgacttgc gcaacgccac cgccaccttc
     2521 ttctcaccgt cgggcggctc gatcgagcga cggtcggcgg gcttctcgta aggcgcggcg
     2581 gcgagcacga tccgcggcca gacgacgatg tcgatccggt cgctgtcctt agctttctcg
     2641 attcgctgga acagcgtttc gtgcaggcga ccgaagcggg cggcgcggcg cgcttccagc
     2701 tcgccgagcc gcttgccgat gtcgaccttg gcaccgcgct cgtcgaacgc cagctcgacc
     2761 gccgtgcccc tggtgcgatg gaccgccttg acgacgtcga cgtggccctc gctccgcttc
     2821 tcgccgggcg cgaggcgaac gacctgcaga tcgtcgatga acaggcgcac cgcgtgctcg
     2881 acacgcaggt tgtcggggac cttgcccgag atcggcaaca ccgagaaggc gatgcgatga
     2941 cgctcgacca gccgttcgcc cttggtgccg agaagctcgg agacgacgag atggcaggcg
     3001 ccgacggtcg cctcgtcgag gcgaacggtg acgccgcggc cgcgcttggc gagctcgata
     3061 ccggcgcgca gctgctcgca gccgcgcatc acgcggatcg ccgcctgcgc cgattgcgga
     3121 tcgaccggcg cgccgaaggc gagctcgatg accgtgccgg gggcgatgat ttcgtcggcg
     3181 gtgatgctgg attcaagagt cgaagtgctc atccaagtct ccggatctgc ggcgtgttgc
     3241 cgctcgggat gtcggacgcg gagtctctgc ctgcaccggg tcatcgtcaa ccgcgcgggc
     3301 gccggcttcg atcgaggcga tgagctggtc gaacgcctct gccgacgctc ttgcgagagg
     3361 ccgccgacgt cgctgcgcgc ctttcatctg cattgaggaa gcagcatcgc gcccatggcc
     3421 gttctaccca gttttgggga ttgttcgcat gcctgcgagc gagttcactc gcgacttctc
     3481 aggaggtcca acatggctga acgaatttct gactcgaagc ccgagggcaa tgaccgcaac
     3541 tcgtacaagc tggagctggt cggcctcacc gctgcgagcg accggccgaa cctggcggtg
     3601 caagtactcg atgccgccaa cgccgtgctg cacacgcagc cggtccaggc cgacggcagc
     3661 ttcaagattc cacctgccgt tctcaagcgc gccaaccgcg tgacgatcgg caccgccgac
     3721 gaaaagggcg gcgtccaggc cgacgcctcg gtcagctacc gcgcgagcga gttcgcggca
     3781 cagctcaagg acgggacgct cgccctagcc gaaggcacgt ggtcgcgctt caagttccag
     3841 tgggtctgcg tcagcggcaa ggtgcaggcg tgctggcggc gcccttggtg gtacgacagc
     3901 atcatcaccg cggcgacgac ggtcaagggg cgggcgagca cgcaggcacg cggcctgtcc
     3961 gccgcttcca gcgctgcgct ggcgtcgctg caggagcgca acacgccgtc gctgaacgac
     4021 ctgctcgtct ggccgttccg ctgcgcgacg gtttgcctcg gcagcgtcga ggtctatcgc
     4081 cgcacatgct gctgctggcc gatcgtctac gcggacccgc gcatcgacga cctgatccgc
     4141 gacctcgaga actacgtcga acggctgccg aagctgccgc cgccgaagcg cgtcttcccg
     4201 ccgccgccgc cgcctccggg cgatccgctg cagacgccgt tcttcaaagg cggcgcgctc
     4261 aacgagctgg cactcaacgc gacccaggac ctgcacgcgc tgcacgccat gccccgggag
     4321 caggcggcgc agtacatcaa ttcgcgcgcc tacctgttcc atcggctgtg cagctgcagc
     4381 tcggcgagca aggtcgggag cggaacgatc cagcccgacg gaagcttcaa catctgctgg
     4441 catgagccgc tgcacctcct cctgcccaac tgctacgagc agtacgccta cgtcgtcaag
     4501 cagacgatcg gcgggagcac gacgacgatc tacgacggcc tcgccgcggg cgcgtggtac
     4561 ggagccggcg accacccgac gctcacctcg tacaacgggc tcgccttcac ctgcaacgag
     4621 accggcagcg gcgacggcaa cgccgaagtc ttcctcgacc tgatcggcga taccgagagc
     4681 cacgagctga cgacgcccgc gtcgaccggc tgggaccgcg tcgccacgcc caacgcgacc
     4741 tccggcctgc tgttccccaa catcggcccg aacaacagtc acctgcgcaa cctgggcggg
     4801 ggcatcgagc tgaagttcgt cttcacgctc ggcatgcgcg atccggcggt cggggcgcac
     4861 tactaccgcg tcagcgtctg cgaggccgat gcgaacggca acccgaccgg ctcccgctac
     4921 tactacggcg acggcctggc ctgggagaag atcgtcggcg ccgacatcgt gccggagtcg
     4981 ctcggtccgg tgacggtggg cagcgaggcc aatctctacc gcatcccgta cagcgacgaa
     5041 ccgtgggtgg gctcggtgcg ccaccacgcg ctggtcaaca cgatgatcgc cgcgctcaac
     5101 gtgcccgccg acacgccggc gaatctggcg ctgccggcca tcaaccatct gatcacgctc
     5161 gaggtgttcg atgcagccgg cgcgcgcctg cggccgctcg gcacgccggc atccggccag
//
LOCUS       DASVHM010000114         1570 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_8491, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000114 DASVHM010000000
VERSION     DASVHM010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8491"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1570
                     /locus_tag="VF308_02240"
     CDS             <1..>1570
                     /locus_tag="VF308_02240"
                     /inference="COORDINATES: protein motif:HMM:NF012731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA gyrase C-terminal beta-propeller
                     domain-containing protein"
                     /protein_id="HEX7435500.1"
                     /translation="NQLYRFTPLQSSFGVNTVALDGGRPLVMTLKDLLVAFVAFREEV
                     VSRRTKFLLTKARDRAHVLVGLAIAVANIDEVIKLIRASQDANEAREALMAREWPATT
                     AASLIELIDDPRHKVSTTGTARLSAEQAKAILDLRLQRLTALGREEIKAELDKLAAEI
                     ADYLDILRSRARIQTIIKDELSALKKEFATPRRTEIAEAIGDMEDEDLIQREDMVITV
                     SHLGYIKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYK
                     EKVWRLPLAAPQARGKALINILPLDAGENITSIMPLPEDEKSWGNLDVMFASTKGTVR
                     RNKLSDFVEVRRSGIIAMKLSEGEGIVGVQICTERDDVLLTSSGGQCIRFPVTDVRVF
                     TGRTSMGVRGIALDDDDKLISMSILRHVGATSEERVAYLKRANAVRRGGGGEEEAAAD
                     GEEAVVAIELGEQRYVELSAAEQFVLTLSERGYGKRTSSYEYRITGRGGKGIVAMDIW
                     EKAGATFKLKPKIGR"
BASE COUNT          279 a          522 c          529 g          240 t
ORIGIN      
        1 tgaaccagct ctatcgcttc acgccgctgc aatcgagctt cggcgtcaac acggtggcgc
       61 tcgacggcgg ccgcccgctg gtgatgacgc tgaaggacct gctggtcgcc ttcgtcgcct
      121 tccgcgaaga ggtggtgtcg cggcgcacca agttcctgct gaccaaggcg cgcgaccgcg
      181 cccatgtgtt ggtcggcctc gccatcgcgg tcgccaatat cgacgaagtg atcaagctga
      241 tccgcgcctc gcaggacgcc aacgaggcgc gcgaggccct gatggcgcgc gaatggccgg
      301 ccaccacggc ggcctcgctg atcgagctga tcgacgaccc gcgccacaag gtcagcacca
      361 cgggcaccgc ccggctgtcg gccgaacagg ccaaggcgat cctcgatctg cgcctgcagc
      421 ggctcacggc gttgggccgc gaggagatca aggccgagct cgacaagctg gcggccgaga
      481 tcgccgacta tctcgacatc ctgcgctcgc gcgcgcgcat ccagaccatc atcaaggacg
      541 agctgtcggc gctgaagaag gaattcgcca cgccgcgccg caccgagatc gcggaagcga
      601 tcggcgacat ggaagacgaa gacctgatcc agcgcgagga catggtcatc accgtctcgc
      661 atctcggcta catcaagcgc gtgccgctct cgacctatcg cgcgcagaag cgcggcggca
      721 agggtcgctc cggcatgcag acgcgcgagg aggatttcgt ctcgcggctg ttcgtggctt
      781 cgacccacac gccggtgctg ttcttctcgt cgcgcgggca ggtctacaag gaaaaagtct
      841 ggcggctgcc gttggcggcg ccgcaggcgc gcggcaaggc gctgatcaac atcctgccgc
      901 tcgacgcggg cgaaaacatc accagcatta tgccgctgcc cgaggacgag aagagctggg
      961 gcaatctcga cgtgatgttc gcctccacca agggcacggt gcggcgcaac aagctgtccg
     1021 acttcgtcga ggtgcgccgc tccggcatca tcgcgatgaa gctgtcggaa ggcgagggca
     1081 tcgtcggcgt gcagatttgc acggagcgcg acgacgtgct gctgacctcc tccggcggcc
     1141 agtgcatccg ctttccggtc accgatgtgc gcgtgttcac cggccgcacc tcgatgggcg
     1201 tgcgcggcat cgcgctcgac gacgatgaca agctcatctc catgtcgatc ctgcgccatg
     1261 tcggcgccac ctcggaggag cgcgtggcct atctcaagcg cgccaacgcg gtgcggcgcg
     1321 gcggcggcgg cgaagaggag gcggctgcgg acggcgagga ggccgtggtt gccatcgagc
     1381 ttggcgagca gcgctatgtc gagctttcgg cggccgagca gttcgtgctc acgctctcgg
     1441 agcgcggcta cggcaagcgc acgtcatcct acgaataccg gatcaccggc cgcggcggca
     1501 aaggcatcgt cgccatggac atctgggaga aagccggggc cacgttcaag ctcaagccga
     1561 agatcggccg
//
LOCUS       DASVHM010000115         2175 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_513719, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000115 DASVHM010000000
VERSION     DASVHM010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_513719"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..407
                     /gene="pal"
                     /locus_tag="VF308_02245"
     CDS             <1..407
                     /gene="pal"
                     /locus_tag="VF308_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HEX7435501.1"
                     /translation="AGAGGTAQSQVASVDLTKGATAAASTLPRIVYFDFDSFVVKDEY
                     RPTVDANAKALVADRKKHIVIEGHTDERGGREYNLALGQKRAEAVAKSMALLGANDSQ
                     IEAVSFGKERPAVQGSDEAAWAKNRRAEIVVR"
     gene            368..1201
                     /gene="ybgF"
                     /locus_tag="VF308_02250"
     CDS             368..1201
                     /gene="ybgF"
                     /locus_tag="VF308_02250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013901431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system protein YbgF"
                     /protein_id="HEX7435502.1"
                     /translation="MGQEPPRRDRRPVMRAAWTLLARPALGVCLAAAFAAPAAHAGLF
                     DDDEARKAILDLRQKLEQSGEQQRARQAEQMAQITEQLSQLKRSLLDLNNQLEMQRAD
                     NAKLRGQNEQLARDVAEVQRKQADIQQGVEDRIRKIEPQKVTLDDKEFLAEPDEKRQY
                     EESIGAVRKGEFDRAAISLAGLLRRWPASGYRESALFWLGNAQYGKRDYKEAINTFRS
                     LVSAVPESPRAPEALLAIANCQAELKDTRAARRTIEELVKAYPRSEAAQAGRERLVSL
                     K"
     gene            1262..>2175
                     /locus_tag="VF308_02255"
     CDS             1262..>2175
                     /locus_tag="VF308_02255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HEX7435503.1"
                     /translation="MQGIHVGALATQVLWAAFGLSVMLGAIMQRTHFCTMGAISDIVN
                     MGDWARMRMWIMAMGVAMIGFNAMVALGWVDASKSLYAGPRLIWLSALVGGAMFGFGM
                     VLASGCGSRTLVRIGGGNLKSAVVFVVLGIAAFATLKGITAVARVDTVDRVAVTLPTG
                     TDLPSLVAAATGASKALLAAALGLGIGGAGVAWALARPEGRSADNVLGGLGAGAVIAA
                     MWWVSGRLGHVAEDPSTLQEAFVATNSQRMESLSFVAPIAYTLDWLMFFSDKSKVLTI
                     GIVSVLGMVVGAALHAVLTRSFRWEGFR"
BASE COUNT          350 a          721 c          782 g          322 t
ORIGIN      
        1 gcgcgggtgc ggggggaacg gcacagagcc aggtggcttc ggtcgacctg acgaagggcg
       61 ccacggcggc cgcatcgacg ctgccgcgca tcgtctattt cgatttcgac agcttcgtcg
      121 tgaaggacga ataccggccc accgtcgacg ccaacgcgaa ggccctcgtc gcggatcgca
      181 agaagcacat cgtgatcgaa ggccacaccg acgagcgcgg cggccgcgaa tacaacctcg
      241 cgctcggcca gaagcgtgcc gaggcggtcg ccaagtcgat ggccctgctg ggcgcgaacg
      301 acagccagat cgaggccgtg agcttcggca aggaacgccc ggcagtgcag ggcagcgacg
      361 aggcggcatg ggccaagaac cgccgcgccg agatcgtcgt ccggtgatgc gcgccgcctg
      421 gactcttctc gcccgcccgg cgctcggcgt gtgcctggcc gcggcattcg ccgcgccggc
      481 cgcgcacgcc ggcctcttcg acgacgacga ggcgcgcaag gcaatcctcg atctgcgcca
      541 gaagctcgag cagagtggcg agcagcagcg cgcccgccag gccgagcaga tggcgcagat
      601 caccgagcag ctgagccagt tgaagcgcag cctcctcgac ctgaacaacc agctcgagat
      661 gcagcgcgcc gacaacgcca agctgcgcgg ccagaacgag cagctcgccc gcgacgtggc
      721 cgaagtgcag cgcaagcagg ccgacatcca gcagggcgtc gaagaccgca tccgcaagat
      781 cgagccgcag aaggtgacgc tcgacgacaa ggaattcctg gccgagcccg acgagaagcg
      841 ccagtacgaa gagtccatcg gcgcagtgcg caagggcgag ttcgaccgtg cggcgatctc
      901 gctcgcaggt ttgctgcggc gctggccggc cagcggctat cgcgagtcgg ccctgttctg
      961 gctcggcaac gcgcagtacg gcaagcgtga ctacaaggag gcgatcaaca cctttcgcag
     1021 cctggtgagc gccgtgccgg agagcccccg ggcgccggag gccttgctgg cgatcgccaa
     1081 ctgccaggcc gagttgaagg acaccagggc ggcgcgccgc acgatcgagg aactggtgaa
     1141 ggcgtatccc cgctcggagg ccgcgcaggc cggtcgcgag cggctcgtct cgctgaagta
     1201 gcgcgctcgc gacgcaatgc ccgcagctgc cggcgcacgg gcccgccggt aaaatgagca
     1261 gatgcaggga attcacgtgg gagcgcttgc gacgcaggtg ctctgggccg cgttcggcct
     1321 ttcggtgatg ctcggcgcga tcatgcagcg cacccacttc tgcacgatgg gggcgatctc
     1381 cgacatcgtc aacatgggcg attgggcgcg catgcggatg tggatcatgg cgatgggcgt
     1441 cgcgatgatc ggcttcaacg cgatggtcgc attgggctgg gtcgatgcgt cgaagagcct
     1501 ctatgccggg ccgcgcctga tctggctttc ggccctcgtc ggcggcgcga tgttcggctt
     1561 cggcatggtg ctcgcgtcgg gctgcggcag caggacgctg gtccggatcg gtggcggcaa
     1621 cctgaagtcg gcggtcgtct tcgtggtgct cggcatcgcc gcgttcgcga cgctcaaggg
     1681 catcaccgca gtggcgcgcg tcgacaccgt cgacagggtg gcggtcacgc tgccgaccgg
     1741 caccgatctg ccttccctcg tggccgcggc gaccggcgcc tcgaaggccc tgctcgccgc
     1801 ggcgctcggc ctcggcatcg gcggcgcagg ggtggcctgg gcgctggcgc gcccggaggg
     1861 tcgttcggcc gacaacgtcc tgggcggtct cggcgccggc gcggtgatcg ccgcgatgtg
     1921 gtgggtctcg ggccgtctcg gccatgtcgc cgaggatccg agcaccttgc aggaggcgtt
     1981 cgtcgcgacc aactcgcagc gcatggagtc cctcagcttc gtcgcgccga tcgcctacac
     2041 gctcgactgg ctgatgttct tcagcgacaa gtcgaaggtg ctgacgatcg gcatcgtctc
     2101 ggtgctcggc atggtcgtcg gcgccgcgct ccacgcggtg ctcacccgga gttttcgctg
     2161 ggagggcttt cgcga
//
LOCUS       DASVHM010000116         4166 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1307845, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000116 DASVHM010000000
VERSION     DASVHM010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4166
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1307845"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..637
                     /locus_tag="VF308_02260"
     CDS             <1..637
                     /locus_tag="VF308_02260"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7435504.1"
                     /translation="AVVGAGNTAMDAMRVSLRVGAEKVYCVYRRSATEAPARAEEIHH
                     AMQEGVEFHWLTSPLELIGDAGNNVRVMRCEKMELGEPDASGRRRPLPVAGSAFELET
                     DTVIFAIGTNANPILGQTSGLKLDKRGYIATDENLATSISGIYAGGDIVTGAATVIQA
                     MGAGRKAARGMKAYLGLRDSECVYGRESSEPESTLFGMPRQEHNFARVHLA"
     gene            672..2582
                     /locus_tag="VF308_02265"
     CDS             672..2582
                     /locus_tag="VF308_02265"
                     /inference="COORDINATES: protein motif:HMM:TIGR03710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HEX7435505.1"
                     /translation="MNDTLTLDPPVAKARAARIAIPEAIIEVISDSGEGAQRCGQSLG
                     AIAARMGNGIWTTEIIPAEIQPPARSVAGASGIRIRIGSERVTNGGDQTELVVAFNEQ
                     VLIGRVSAGELKPGATILLESMWASHRDPAVVASYVETVAALRRDGFDVHEVPLEERC
                     KELVADPRKGKNMFVLGILCHLYGLDPTLAREQIARIFGKKDAKVIASNVALYDAGAA
                     WGAAHLDFSYRIPAQRSSQAQIVVNGNIAIALGVIASGMDICAMYPITPATSVSHYLS
                     EVFEKVGGMVHQAEDEIAACAFAVGASYAGKCAVTVTSGPGYSLKQEVIGLAVMAEIP
                     LVVVNVQRGGPSTGQPTKVEQGDALAAIFGSHGDAPKVVMAPCSIEDCFYSVITARKI
                     AETFGMVVVVLSDTSLSTAQQPFPRPSFNTEWLAPPVDQTPVPPGAKPYDWDPVTGLS
                     RRFQPGRPGGMHTLTGLAHDRASKVAYDPAINEEGLRARSLKLAALQKTLKAPPVFGE
                     EGGEGGDMLLIGWGSTMGAIEEAVTRLRGEGLRVASMHLRFLQPMPSGIREILARFKH
                     AMTIEGNWSDKLEDELIDEDNRRYSALAMMLRSRFLVDIDCWSEARGQPIKPSDICRV
                     VRAALQRKGTAS"
     gene            2579..3568
                     /locus_tag="VF308_02270"
     CDS             2579..3568
                     /locus_tag="VF308_02270"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEX7435506.1"
                     /translation="MSSSLSHCVIKLHEEHHDLEDYQGGVPRWCNGCGDNAILAAMQR
                     LCSEEELAPENTVFVSGIGCSSRLPHYMKTYGFHGLHGRAFPVAEGIKIARPDLNVFV
                     STGDGDCCSIGAGHWIHALRYNINLTVVLHDNHVYGLTKKQASPTSPRGLKSNTTPYG
                     ALLEPMNPLTVSLGVQGASFVAQAVDWIPEVLYDIMRAAFRHRGFSFVRVLQRCPEFM
                     PKAFDPWLHDPQRTMLLTHADGLQLSPSLGSAYRNQREHDPINIDKAREIASLEDPIP
                     VGILYRNPDAPCYEDLRHAGQLRSPEYIRAGLNRELDKFTVWPEDDALATRAA"
     gene            3595..>4166
                     /locus_tag="VF308_02275"
     CDS             3595..>4166
                     /locus_tag="VF308_02275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435507.1"
                     /translation="MQSKTPPDQLIFHVAGRCQGDSLTPIDGLGLRPAMLAPYRELAA
                     LRHDFPIVLAAREGVPEFVRSLSSLVDAVLQDVAPRGIEGERLRRHALQLEEEIRRAV
                     DLGVTGTLGELWEQAAATLGAREGETLEQVLRQASGALPADGELLGCSGDMPARLVTH
                     AWRAAQRVKARRFQAELSRLVLRLSDILRAA"
BASE COUNT          708 a         1482 c         1381 g          595 t
ORIGIN      
        1 cgccgtggtc ggcgccggca acacggccat ggacgcgatg cgcgtgtcgc ttcgcgttgg
       61 cgccgaaaag gtctactgcg tctatcggcg cagcgccacc gaggcgccgg cgcgagccga
      121 ggagatccac cacgcgatgc aggaaggcgt cgagttccac tggctgacga gtccgctcga
      181 gctgatcggc gacgcgggca acaacgtgcg cgtgatgcgc tgcgagaaga tggagctcgg
      241 cgagcccgat gcctccggac gcaggcgccc gctgccggtg gccggtagtg cgttcgagct
      301 cgagaccgac acggtcatct ttgcgatcgg caccaacgcc aatccgatcc tcggccagac
      361 ctcgggtctg aagctcgaca agcgcggcta tatcgccacc gacgagaacc tcgccacctc
      421 gatctcaggc atctacgccg gcggcgacat cgtcaccggc gcggcgacgg tgatccaggc
      481 catgggcgcg ggtcgcaagg ccgcgcgcgg catgaaggcc tacctcggcc tacgcgacag
      541 cgaatgcgtc tacgggcgcg agagcagcga gccggagagc acgctcttcg gcatgccgcg
      601 acaggagcac aacttcgccc gcgttcacct cgcctgaaca ctgcctgaac gcctgccaca
      661 gcacacccac catgaacgac accctgacgc tcgatccacc cgtcgccaag gcacgagccg
      721 cgcgcattgc gatccccgaa gccatcatcg aggtcatcag cgattccggc gagggcgcgc
      781 agcgctgcgg ccagtccctg ggcgcgatcg ccgcgcgaat gggcaacggc atctggacga
      841 ccgagatcat cccggccgag atccagccgc cggcgcgcag cgtcgccggc gcgagcggga
      901 tccggatccg gatcggctcg gagcgcgtca ccaacggtgg cgaccagacc gagctggtcg
      961 tggccttcaa cgagcaggtg ctgatcggtc gcgtgagcgc cggcgagctc aagcccggcg
     1021 cgacgatcct gctcgagagc atgtgggcga gccaccgcga tccagccgtc gtggcgtcct
     1081 acgtcgagac tgtcgctgcc ctgcgccgcg atggcttcga cgtgcacgag gtcccgctcg
     1141 aagaacgctg caaggagctc gtcgccgatc cgcgcaaggg caagaacatg ttcgtgctcg
     1201 gcatcctgtg ccatctgtac gggctcgacc cgacgctggc gcgcgagcag atcgcacgga
     1261 tcttcggcaa gaaggacgcc aaggtcatcg ccagcaacgt cgcgctctac gacgccggcg
     1321 ctgcctgggg cgctgcccat ctcgacttca gctaccgcat cccggcgcag cgctcgagcc
     1381 aggcgcagat cgtcgtcaac ggcaacatcg cgatcgctct cggcgtcatc gcctccggca
     1441 tggacatctg cgcgatgtac ccgatcacgc ccgcgacctc ggtttcgcac tatctgagcg
     1501 aggtgttcga gaaggtcggc ggcatggtgc atcaggccga ggacgagatc gccgcgtgcg
     1561 cgttcgcggt cggtgcgtca tacgccggca agtgcgccgt gacggtcacc tccgggcccg
     1621 gctactcgct caagcaggaa gtcatcggcc tcgcggtgat ggcggagatt ccgctcgtgg
     1681 tcgtcaacgt ccagcgcggc ggcccgagca cgggccagcc gaccaaggtg gagcagggcg
     1741 acgcgctcgc cgcgatcttc ggcagccacg gcgacgcacc caaggtcgtg atggccccct
     1801 gcagcatcga ggactgcttc tactcggtga tcaccgcacg caagatcgcg gagaccttcg
     1861 ggatggtggt cgtcgtcctg tccgacacga gcctgtcgac ggcgcagcag ccgttcccgc
     1921 ggccgtcgtt caacaccgaa tggctcgccc cgccggtcga ccagaccccc gtgccccccg
     1981 gcgcgaagcc ttacgactgg gacccggtca cgggcctgtc gcgccgcttc cagcccggcc
     2041 gccccggcgg catgcacacc ctcaccggcc tcgcgcacga ccgcgccagc aaggtcgcct
     2101 acgacccggc gatcaacgag gaaggcctgc gcgcgcgcag cctcaagctc gccgcgctgc
     2161 agaagacgct caaggcgccg ccggtgttcg gcgaagaggg cggcgaaggc ggcgacatgc
     2221 tgctgatcgg ctggggcagc acgatgggcg cgatcgagga ggccgtgacg cgcctgcgcg
     2281 gcgagggcct gcgcgtcgcg tcgatgcatc tgcgcttcct gcagccgatg ccgtcgggaa
     2341 tccgcgagat cctggcccgc ttcaagcacg cgatgacgat cgagggcaac tggtccgaca
     2401 agctcgaaga cgagctgatc gacgaggaca accggcgcta ctcggcgctg gccatgatgc
     2461 ttcgctcgcg attcctggtc gacatcgatt gctggagcga agcgcgcggc cagccgatca
     2521 agccgagcga tatctgccgc gtcgtccgcg cggcgctgca gcgaaagggc actgcatcat
     2581 gagcagctca ctgagccact gcgtcatcaa gctgcacgag gagcaccacg acctcgagga
     2641 ctaccagggc ggcgtgccgc gctggtgcaa cggctgcggc gacaacgcca tcctggcggc
     2701 gatgcagcgc ctgtgcagcg aagaagagct ggcaccggag aacaccgtct tcgtgtcggg
     2761 gatcggctgc tcgagcaggc tgccgcacta catgaagacc tacggctttc acgggctgca
     2821 cggccgcgcc ttcccggtcg ccgaggggat caagatcgcc cggccggacc tgaacgtgtt
     2881 cgtcagcacc ggcgacggcg actgctgcag catcggcgcg gggcactgga tccatgcgct
     2941 tcgctacaac atcaacctca cggtcgtcct gcacgacaac cacgtctacg gcctgaccaa
     3001 gaagcaggcc tcgccgacgt cgccgcgcgg cctgaagagc aacacgacgc cgtacggcgc
     3061 gctgctcgag ccgatgaacc cgctgacggt gtcgctcggc gtgcagggcg catcgttcgt
     3121 cgcccaggcc gtcgactgga ttcccgaagt cctctacgac atcatgcgcg ccgccttccg
     3181 ccatcgcggc ttctcgttcg ttcgcgtgct gcagcgttgc ccagagttca tgcccaaggc
     3241 gttcgacccc tggctgcacg atccgcaacg gacgatgctg ctgacgcatg ccgacggtct
     3301 gcagctcagc ccgagcctcg gcagcgcgta ccgcaaccag cgcgagcacg atccgatcaa
     3361 catcgacaag gcgcgcgaga tcgcctcgct cgaggacccg atcccggtcg gcatcctgta
     3421 tcgaaacccg gatgccccgt gctacgagga cctgcgccac gccggccagt tgcgctcgcc
     3481 cgaatacatc cgtgccggcc tgaaccgcga gctcgacaag ttcaccgtct ggcccgagga
     3541 cgacgccctg gcaacgcgcg ccgcgtgagc gagcccgcaa gatcgagagt ggcgatgcaa
     3601 tcgaagactc ccccggacca gctgatcttt cacgtcgccg gccggtgcca gggcgacagc
     3661 ctgacaccga tcgacggcct cggcctgcgt ccggcgatgc tggcgccgta ccgcgagctc
     3721 gcggccctgc gccacgactt tccgatcgtt ctcgcagcgc gcgaaggcgt gcccgagttc
     3781 gtgcgctcgc tcagcagcct cgtcgacgcg gtactccagg acgtcgcgcc gcgcggcatc
     3841 gaaggcgagc gtctgcgccg ccatgcgctg cagctcgagg aggaaatccg tcgtgccgtc
     3901 gacctcggcg tcaccggcac gcttggcgag ctgtgggagc aggccgcggc gacgctgggc
     3961 gcgcgcgaag gcgaaacgct ggaacaggtg ctgcgccagg cgagtggcgc cttgcccgcc
     4021 gacggagaac tgctcggctg ctccggcgac atgccggccc gactcgtcac gcatgcctgg
     4081 cgcgccgcac agcgagtcaa ggcgcgccgc ttccaggccg agctgagccg tctcgtgctg
     4141 cggctctcgg acatcctgcg cgccgc
//
LOCUS       DASVHM010000117         2597 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_801740, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000117 DASVHM010000000
VERSION     DASVHM010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_801740"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..504)
                     /locus_tag="VF308_02280"
     CDS             complement(<1..504)
                     /locus_tag="VF308_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX7435508.1"
                     /translation="MAVALALAGCASGPDKPKPKPFEPLTPQNVAQPVWSQRVGALQF
                     PLTVTVAGGAFVAGASDGTVLALEIETGRELWRANVGGALGAGVGSDGRFASVVTRAG
                     ELVTLEAGQVKWRKPIGTRVATAPLVAGERVFVVGVDRTVQAFDALDGRKLWALQRPG
                     DPLTLAQS"
     gene            complement(543..1226)
                     /locus_tag="VF308_02285"
     CDS             complement(543..1226)
                     /locus_tag="VF308_02285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011801265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7435509.1"
                     /translation="MATHLDLEEQEQLDQLKAFWKQYGNLVTWALIAVLAAYAAWNGW
                     NWWQRDQSVKAGAMFDELDAAAQAGDADRAGRVFADMKSRYPRTAFTQQGGLLAAKTQ
                     FEKGQADAARASLTWVGDNAVEGEYRAVARLRLAGLLLDEKKYDEALKQLDGASAKEF
                     APLVDDRRGDILLAQGKKDEAKAAYLKALTAMDPKVDYRRLIEAKLNVLGTDAAAGQG
                     KASAGDAPK"
     gene            complement(1252..2544)
                     /gene="hisS"
                     /locus_tag="VF308_02290"
     CDS             complement(1252..2544)
                     /gene="hisS"
                     /locus_tag="VF308_02290"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019653117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEX7435510.1"
                     /translation="MAEPLRGVKGMNDILAPESARWEWFEDRVRALMRRYGYANVRTP
                     ILEPTALFVRGLGAVTDIVEKEMYSFEDALNGDMLTLRPEATAGIVRAMIEHNALYGG
                     PLRVWTAGAVFRHERPQKGRYRQFHQIDVEALGYAGPDVDAEQILMCRALWRELGLVE
                     GRDVRLELNSLGQQAERAAHRAALIAHFEQHVDALDEDAQRRLHSNPLRILDSKNPPL
                     QSIIEAAPKLMDFLGATSLAHLNAVRAVLDAAGLEYRINARLVRGLDYYNLTVFEWVT
                     DRLGSQGTVCGGGRYDGLFEQLGGKSTPAVGWGMGVERLLLLLEAVGVPVPAAVPDVY
                     AIVPSEPTLAVAMTTCEALRAAGVSVQMHAAGEGGRGSMKSQFKRADASGARYALIFG
                     DEELARGEVAFKSLRDTAAAQRTLPLADAARWAAELLA"
BASE COUNT          402 a          911 c          865 g          419 t
ORIGIN      
        1 cgactgggca agcgtcaacg gatctcccgg acgctgcaag gcccagagct tgcgcccatc
       61 gagcgcgtcg aaggcctgca cggtgcggtc gacaccgacg acgaagacgc gttcgccagc
      121 caccagcggc gcggtcgcga cccgcgtgcc gatcggcttg cgccatttga cctgaccggc
      181 ttcgagcgtg acgagttcgc cggcgcgggt gacgaccgag gcaaagcgcc cgtcgctgcc
      241 gacgcccgcg ccgagcgcac cgccgacgtt cgcgcgccag agttcacgcc cggtctcgat
      301 ttcgagagcg agcacggttc cgtcgctcgc accggcgacg aaggcgccac ccgccaccgt
      361 gaccgtgagc ggaaattgca gcgcgccgac tcgctggctc cagaccggct gcgccacgtt
      421 ttgcggggtc agcggttcga acggcttcgg cttgggcttg tccggaccgc tcgcgcaacc
      481 cgccagggcc agcgcgaccg ccaaccaggg accgcgctgt cgaacgagag aaaaggcgcg
      541 cctcatttcg gcgcgtctcc ggccgatgcc ttgccttgtc cggcggccgc atccgtgccg
      601 aggacattca gcttggcttc gatcaggcgc cggtagtcga ccttcggatc catggcggtc
      661 aaggccttca ggtaagccgc cttggcttcg tccttcttgc cctgggcgag caggatgtcg
      721 ccgcgccggt catcgacgag cggcgcgaat tccttcgcgc tcgcgccgtc gagttgcttc
      781 aaggcctcgt cgtatttctt ctcgtcgagc agtaggccgg cgaggcgcag gcgcgccacg
      841 gcccggtatt cgccttccac cgcgttgtcg ccgacccagg tcagcgaagc gcgcgccgca
      901 tcggcctggc ccttttcgaa ctgcgtcttg gccgcaagca gaccgccctg ctgcgtgaac
      961 gcggtgcgcg gatagcgcga cttcatgtcg gcgaagactc ggccggcccg gtcggcatcg
     1021 ccggcctggg cggcggcgtc gagctcgtcg aacatcgcac cggccttgac cgactggtcg
     1081 cgttgccacc agttccagcc gttccacgcc gcgtaggcgg caagcaccgc gatcagggcc
     1141 caggtgacga gattgccgta ttgcttccaa aacgccttga gctggtcgag ttgttcttgt
     1201 tcttcgaggt cgagatgcgt ggccatgaga ggaaaccgag tgaaggcgag attatgcgag
     1261 gagttccgcg gcccaccggg ctgcgtcggc gagcggcaag gtccgctgcg cggccgcggt
     1321 atcgcgcagc gacttgaagg cgacttcgcc gcgggcgagc tcctcgtcac cgaagatcag
     1381 tgcataccgg gcgccgctcg catcggcgcg tttgaattgc gacttcatgc tgccccggcc
     1441 accctcgccg gccgcatgca tctgcaccga gacgcccgcg gcacgcagcg cctcgcaggt
     1501 ggtcatcgca acggccagcg tgggctcgct cggcacgatc gcatacacgt cagggactgc
     1561 ggcgggcacc ggtacgccga ccgcttcgag cagcagcagc aaacgctcga cacccatgcc
     1621 ccaaccgacc gccggcgtcg atttgccgcc gagttgctcg aacagcccgt cgtagcggcc
     1681 gccgccgcag acggtacctt gcgagccgag tcgatcggtc acccactcga acaccgtcag
     1741 gttgtagtag tccaagccgc gcacgaggcg cgcattgatg cggtactcga gaccggccgc
     1801 gtcgagcacc gcgcgcaccg cgttcaggtg cgcaagcgag gtcgcaccga gaaaatccat
     1861 cagtttcggc gccgcctcga tgatcgattg cagcggcggg ttcttgctgt cgaggatgcg
     1921 cagcggatta ctgtgcaggc gacgctgcgc atcctcgtcg agcgcatcga catgctgctc
     1981 gaagtgcgcg atcagcgcgg cgcgatgcgc ggcgcgctcg gcctgctggc ccaggctgtt
     2041 gagttcgagc cgaacgtcgc ggccttcgac gaggccgagc tcacgccaca gcgcgcggca
     2101 catcagaatc tgctcggcgt cgacgtccgg ccccgcgtag cccagcgcct cgacgtcgat
     2161 ctggtggaac tggcggtagc ggcccttctg cggccgctca tggcgaaaca ctgcgccggc
     2221 ggtccagacg cgtagggggc cgccgtacag cgcgttgtgc tcgatcatcg cgcgcacgat
     2281 gccagcggtc gcctcggggc gcagcgtcag catgtcgccg ttcaacgcat cctcgaacga
     2341 atacatctcc ttctcgacga tgtcggtcac cgcgccgagg ccacgcacga agagcgccgt
     2401 cggctcgagg atcggggtgc gcacgttggc gtagccgtag cgccgcatca gggcgcgcac
     2461 cctgtcctcg aaccactccc agcgcgccga ttccggcgcc aggatgtcgt tcatgccctt
     2521 cacgccgcgc aggggttcag ccatgggatc ctgtctgccc ggacgcgcgg caccgcgtcg
     2581 cgatcggggg tcgcgct
//
LOCUS       DASVHM010000118         5185 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_947386, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000118 DASVHM010000000
VERSION     DASVHM010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5185
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_947386"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1252
                     /locus_tag="VF308_02295"
     CDS             <1..1252
                     /locus_tag="VF308_02295"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011614904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX7435511.1"
                     /translation="GPAILKYVRDTASAYGIDRKIRFGHRVKRASWSTGDARWAVEVE
                     RGATNEIVLLTCDFLFMCSGYYSYAEGYTPEFAGSERFAGRIVHPQKWTDDVDYAGKR
                     VVVIGSGATAVTLVPELAKKAAHVTMLQRSPTYVVARPSEDGMANWLRRHLPARLAYA
                     ITRWQRVLLGMYFFNLCRRKPARAKQLILGGVRAWLGPDYDVDTHFTPRYNPWEQRLC
                     LVPDGDLFRAIRSGRASVVTDRIESFTEGGLKLKSGTELEADLIVTATGLNLQVLGGV
                     ALTVDGEPVDLARTLNYKGMMYSGVPNLVSSFGYTNASWTLKCDLTCEYVCRLLNHMK
                     KHGLRQCTPRSTDPTVTEEPWVDFSSGYLQRSMHLFPKQGSRAPWKLYQNYPRDILML
                     RFGKVDDGVMEFSGPPAEVVALRA"
     gene            complement(1257..2576)
                     /locus_tag="VF308_02300"
     CDS             complement(1257..2576)
                     /locus_tag="VF308_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007857474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HEX7435512.1"
                     /translation="MARNTHVAADTNAPPITDTLARFVAGHASRGWSDAVEREAHRTF
                     YNWLGCAIGAAHHEAADAALAAVRMLEPASQASVLGRVERVDMASAALLNGVTPHTFD
                     FDDTHLKTIIHPAGPVASAVLALAEQRGAPGRDVIDALVLGIDVACRIGNVMYPDHYD
                     RGWHITGSTGMLGAAAGCARLLRLDALQTAMALGIAASQPVGLREQFGTMTKPFHPGA
                     AARAGLMSALLASHGYTASPRALEAPRGFVQVVSDKHAWHEVSDELGSRFEISFNTYK
                     PFACGIVIHPSIDACVQLRERGITPEEVARIELRVHPLVLELTGKKEPHDGLGAKFSV
                     YHGCAAGLVFGRAGEAEFSDAVVNRPDVVALRRKVVASADEAIEEAGADVTAVLADGQ
                     RVRVRIEHAIGSLQRPLSDAQLDLKFATLVEPVLGASKVLLIAALCR"
     gene            complement(2628..3593)
                     /locus_tag="VF308_02305"
     CDS             complement(2628..3593)
                     /locus_tag="VF308_02305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019428539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7435513.1"
                     /translation="MNRRELLQASAALVLPVAAGAQTYPTRPIRYIVPVAAGGGNDMI
                     ARVVTERWGRVLGQQFIVENQGGGGGVIACMTTARAAPDGYTLMQGYVATHGTTPATR
                     KVPYDAIKDFTPIGMIGATPNVLVVNSALPVRTLAEFIDYVRRNPGRVNYGSAGPGSL
                     THLTMELFKQQIGAFMLHIPYRGIAPAFTDLLGGQTQAMFPGLAAALPHLRSGRVRAL
                     AVTGRVRSAQLKDVPTLEESGFKGFDAMQWYGSVGPAGMPAEIVRRLNESQVAVLKDP
                     DLRERLSIEAVEPMPMTPEQFGEYIRADIQRWTALAKARNIRLDD"
     gene            3758..>5185
                     /locus_tag="VF308_02310"
     CDS             3758..>5185
                     /locus_tag="VF308_02310"
                     /inference="COORDINATES: protein motif:HMM:NF013003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEX7435514.1"
                     /translation="MESLRKFLKTDIGWIVVVGVLLLLLQVAATLITAMEVDHTSGRI
                     ASDLAKLQAITLSDEKTRQEVLNLRIQNEIRGFLSNSLLVGIGPMVTAFVALVGALLG
                     LRNYLQSREKERLDRASTELKDTMDRLVNDEPWQRAAGILGLQHFLSPDLREYHLRAV
                     SALAMAARMESNAEVIDTIRIAVEQAVRSVDPSVLRQATWQWAKLNKARFGGPRELRE
                     LDFRDAFLHDADFTDCDLSGGLFANAHLNGATLERATLVGADLSHADLAGASLVGADL
                     REATLFNAKVMQMDIAGAKMRQARLDADTMPWELIVNWRRAELDDALRARLIERYGDE
                     PSGPKVLMLMWEVPPFVAGGTWTACFHLVRNLRRRGADVTVVVPWAESLLVSQPFGSE
                     VRVVALGIVPPELVSPAGPAGFSPYGGYGGGPTYGGAPTWSPYGGTPSWSAYGAAPSW
                     SPYAATPSWSPYGNAPRSWGTYGDAG"
BASE COUNT          788 a         1773 c         1825 g          799 t
ORIGIN      
        1 agggccggcc atcctcaagt acgtgcgcga cacggcgagc gcctacggca tcgaccgcaa
       61 gatccgcttc ggccaccgcg tcaagcgcgc atcctggtcg accggggacg cgcgctgggc
      121 cgtcgaggtc gagcgcggcg cgacgaacga gatcgtgctt ctcacctgcg actttctctt
      181 catgtgcagc ggctactaca gctacgccga aggttacaca cccgagttcg ccggcagcga
      241 gcgcttcgcc ggccgcatcg tgcacccgca gaagtggacc gacgacgtcg actacgccgg
      301 caagcgcgtg gtcgtgatcg gcagcggcgc taccgcggtg acgctggtgc ccgaattggc
      361 gaagaaggcc gcgcacgtga cgatgctgca gcgctcgccg acctacgtcg tcgcaaggcc
      421 gtccgaagac ggcatggcca actggctgcg gcgccatctg ccggcgcggc tcgcctacgc
      481 catcacgcgc tggcagcggg tattgctggg catgtacttc ttcaacctgt gccggcgcaa
      541 gccggcgcgc gcgaagcaat tgattctcgg cggcgtgcgg gcctggctcg ggccggacta
      601 cgacgtcgac acccacttca cgccgcgcta caacccgtgg gagcagcgcc tgtgcctggt
      661 gccggacggc gatctcttcc gcgccatcag gtccgggcgc gcgtcggtgg tcaccgaccg
      721 catcgagagc ttcaccgagg gtggcctgaa gctgaagtcg ggcaccgaac tcgaggccga
      781 cctgatcgtc accgccacgg ggctgaacct gcaggtgctg ggcggcgtgg cgctgaccgt
      841 cgacggcgaa cccgtcgact tggccaggac gctgaactac aagggcatga tgtacagcgg
      901 cgtgcccaac ctggtgtcgt cgttcggcta cacgaatgcc tcgtggacgc tcaagtgcga
      961 cctgacctgc gagtacgtgt gccggctcct gaaccacatg aagaagcacg gcctgcgcca
     1021 atgcacgccg cgcagcaccg accccacggt caccgaggaa ccctgggtcg atttctcgtc
     1081 gggctatttg cagcgttcga tgcacctgtt tccgaagcag ggatcccggg cgccgtggaa
     1141 gctgtaccag aactacccgc gcgacatcct gatgctgcgc ttcggcaagg tggacgacgg
     1201 cgtgatggaa ttctccggcc cgccggccga agtggtggcc ttgcgggcct gacgcgtcat
     1261 cggcacagcg cagcgatcaa caggaccttc gaagcaccga gcaccggctc gaccagcgtc
     1321 gcaaacttga ggtcgagctg cgcgtcggag agcggccgct gcagcgagcc gatggcatgc
     1381 tcgatgcgca cgcgcacgcg ctgcccatcg gcgagcaccg cggtgacgtc ggcgccggcc
     1441 tcttcgatgg cctcgtccgc gctggccacc accttgcggc gcagcgcgac cacgtcgggc
     1501 cggttgacga cggcgtcgga gaactcggct tcgccggcgc gcccgaagac gagcccggcg
     1561 gcgcagccgt ggtagacgct gaacttcgcg cccaggccgt cgtgtggttc cttcttgccg
     1621 gtgagctcga gcacgagcgg gtgcacgcgc agctcgatgc gcgccacctc ctcgggcgtg
     1681 atgccgcgct cgcgcagctg cacgcaggcg tcgatgctcg ggtggatgac gatgccgcag
     1741 gcgaacggct tgtaggtgtt gaacgagatc tcgaagcggc tgccgagctc gtcgctcacc
     1801 tcgtgccagg cgtgcttgtc cgagaccacc tggacgaagc cgcgcggcgc ttcgagcgcg
     1861 cgcgggctcg ccgtgtagcc gtggctcgcc agcagcgccg acatcagccc ggcgcgcgcg
     1921 gcggcgccgg ggtggaaggg cttggtcatc gtgccgaact gttcgcgcag cccgaccggc
     1981 tgcgacgccg cgatgccgag cgccatcgcc gtctgcaaag cgtcgaggcg cagcaggcgg
     2041 gcgcagccgg ccgccgcgcc caacatcccg gtggagccgg tgatgtgcca gccacggtcg
     2101 tagtggtcgg ggtacatgac gttgccgatg cggcacgcga cgtcgatgcc gagcacgagc
     2161 gcatcgatca cgtcgcgccc cggggcgccg cgctgttcgg ccagcgccag cacggcggag
     2221 gcgaccggcc cggccgggtg gataatcgtc ttcaggtgcg tgtcgtcgaa gtcgaaggtg
     2281 tgcggggtga cgccgttgag caacgccgcg ctcgccatgt cgacccgctc gacacgcccg
     2341 agcacgctcg cctgcgaggc cggctcgagc atccgcacgg cggcgagcgc cgcgtcggcg
     2401 gcctcgtggt gagcggcgcc gatggcgcag ccgagccagt tgtagaaggt gcgatgcgcc
     2461 tcgcgctcga cggcgtcgct ccagccgcgg ctggcgtggc cggcgacgaa gcgggccagc
     2521 gtgtcggtga tcggcggtgc gttcgtgtcg gcggcgacgt gcgtgttgcg ggccacgggg
     2581 ctcctcgttg cgtcaggttg aaaaagaagc ggcgcagccg cccggcgtca atcgtcgagg
     2641 cggatgttcc gggccttcgc cagggcggtc cagcgctgga tgtcggcccg gatgtactcg
     2701 ccgaactgct cgggcgtcat cggcatgggc tccacggcct cgatcgaaag ccgctcgcgc
     2761 aggtcggggt ccttcagcac cgcgacctgc gactcgttga ggcgcctgac gatctcggcc
     2821 ggcatgccgg cggggccgac cgagccgtac cactgcatcg cgtcgaagcc cttgaagccc
     2881 gactcctcga gcgtgggcac gtccttgagt tgcgcgctgc gcacccgtcc ggtgaccgcg
     2941 agcgcacgca cgcggcccga gcgaaggtgc ggcagcgcgg cggccaggcc ggggaacatc
     3001 gcctgcgtct ggccgccgag cagatcggtg aaggccggcg cgatgccacg gtacgggatg
     3061 tgcagcatga aggcgccgat ctgctgcttg aagagttcca tcgtcaggtg cgtgagcgag
     3121 ccggggccgg ccgagccgta gttgacgcgg ccggggttcc tgcgcacgta gtcgatgaac
     3181 tcggcgagcg tcctgaccgg cagcgcgctg ttgaccacca gcacgttcgg cgtggcgccg
     3241 atcatgccga tcggcgtgaa gtccttgatc gcatcgtaag ggaccttgcg cgtggccggc
     3301 gtggtgccgt gcgtggcgac gtaaccctgc atcagggtgt agccgtcggg cgccgcgcgg
     3361 gccgtggtca tgcacgcgat cacgcctccg ccgccaccct ggttctcgac gatgaactgc
     3421 tgcccgagca cccggcccca gcgctcggtg accacccgcg cgatcatgtc gttgccgccg
     3481 ccggcggcga cggggacgat gtagcggatc ggcctggtcg gataggtctg cgcgcctgcc
     3541 gcgaccggaa gcacgagcgc agccgatgcc tgcagcaact cgcggcggtt catacctgtc
     3601 tccttctttc gtccatgcac tgctcgggag tgttgattcg aggccgccgg tgctgattat
     3661 ggcgagcgca atgcacggtt gccgctctac cattgaccaa ttccgcgatc ctcgcggctg
     3721 caatcggcgt tcatgaagcg acaaaggagc gtattgcatg gagagcctgc gcaagttcct
     3781 caagaccgac atcggctgga tcgtcgtcgt cggcgtcctg ctcctgctgc tgcaggtggc
     3841 cgcgacgctg atcaccgcca tggaggtcga ccacacgagc ggccgcatcg cgagcgacct
     3901 ggccaagctg caggccatca ccctcagcga cgagaagacg cgccaggagg tgctcaacct
     3961 gcgcatccag aacgagatac gcggcttcct gtccaacagc ctgctggtcg gcatcggccc
     4021 gatggtcacg gccttcgtgg cgctcgtggg cgccctcctg ggcttgcgca actacctgca
     4081 atcgcgcgag aaggagcggc tggaccgcgc atcgaccgag ctcaaggaca ccatggaccg
     4141 gctcgtgaac gacgagcctt ggcagcgcgc ggcgggcatc ctcgggctgc agcacttcct
     4201 gtcgccggac ctgcgcgaat accacctgcg cgcggtgtcg gcgctggcga tggccgcgcg
     4261 catggagagc aacgccgagg tgatcgacac gatccgcatc gcggtcgagc aggcggtgcg
     4321 ctctgtcgac ccatcggtgc tgcgacaagc cacctggcag tgggccaagc tcaacaaggc
     4381 ccgattcggc ggcccgcggg agctgcgcga gctcgacttc cgcgacgcct ttctgcacga
     4441 cgcagacttc accgactgcg acctttcggg cggcctgttc gccaacgcgc acctcaacgg
     4501 cgcaacgctt gaacgagcca cgctcgtcgg cgccgacctg tcgcacgcag acctcgccgg
     4561 cgccagcctc gtcggcgcgg acctgcgcga ggcgacgctg ttcaacgcga aggtgatgca
     4621 gatggacatc gccggcgcga agatgaggca ggcgcggctg gacgcggaca ccatgccatg
     4681 ggaactgatc gtgaactggc gccgcgccga actcgacgat gcgctgcgcg cgcgcctcat
     4741 cgaacgctac ggcgacgagc cgtcgggccc caaggttctg atgttgatgt gggaggtgcc
     4801 gcccttcgtg gcaggcggca cgtggaccgc gtgcttccac ctcgtgcgca acctgcgccg
     4861 ccgcggcgcc gacgtcaccg tcgtcgtccc ttgggcggaa tcgctcctcg tgtcgcagcc
     4921 gttcggttcc gaggtgcgcg tggtggcgct gggaatcgtg ccgccggagc tcgtgtcgcc
     4981 cgcagggccc gcgggcttct cgccctacgg cggctacggg ggcgggccga cgtacggcgg
     5041 cgcccctacc tggtcgccat acggcggcac gccgtcatgg tcggcgtatg gagcggcgcc
     5101 gtcgtggtcg ccctacgctg ccacgccttc gtggtcgccc tacggcaacg ccccgcgcag
     5161 ctggggtacc tacggggacg cgggc
//
LOCUS       DASVHM010000119         6172 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_801784, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000119 DASVHM010000000
VERSION     DASVHM010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6172
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_801784"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..588
                     /locus_tag="VF308_02315"
     CDS             70..588
                     /locus_tag="VF308_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase"
                     /protein_id="HEX7435515.1"
                     /translation="MWKILRQIGRAGIRSEAAPPYDDALRVEAEQIQRDLLATLGRAL
                     AIRQVDAGSCNGCELEIHALDNPYYNLEGLGIRFVASPRHADLLLVTGPVSRNMELAL
                     SRTYEATPAPKLVVAVGDCGCDGGIFGTSYATCGGVASVLPVDVAVPGCPPAPIEILR
                     GILTAVRRGQPK"
     gene            656..1327
                     /locus_tag="VF308_02320"
     CDS             656..1327
                     /locus_tag="VF308_02320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435516.1"
                     /translation="MGYLEELKRQADAALAQQTQDIGALQRNALLTDSACQSAARYFG
                     TLARQLNVLQPVSKAVWRFDNRTSFSQLRFTDFRADSRLKKLRDAEVFDHVVLSFAAK
                     TGTRVTIAKDFPPEIEKLEARLRQCGGLYDSEVIRDPENGRFVEKRFELLADFQSSVR
                     LLPDHDAGRVTFHIANLDGFETVSVVFPAFEVGTARLDELARWINGEPHAFLRDGQHL
                     RRVVA"
     gene            1394..1597
                     /locus_tag="VF308_02325"
     CDS             1394..1597
                     /locus_tag="VF308_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015866864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3460 family protein"
                     /protein_id="HEX7435517.1"
                     /translation="MPWFWKPYTSDITSFIDGLKAKKPTLEDEQRRGRAIFWDRRIDP
                     TAEGEYQDARVPQQPYVYQNRVR"
     gene            1617..2438
                     /locus_tag="VF308_02330"
     CDS             1617..2438
                     /locus_tag="VF308_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HEX7435518.1"
                     /translation="MEDLAEVAEEEVVDSIAVARLYGEPLFDLPHDLYIPPDALEVFL
                     EAFEGPLDLLLYLIRRQNFNILDIPLASVTRQYLTYVEQIRSRNLELAADYLLMAAML
                     IEIKSRMLLPPRKSADGKEPDDPRAELVRRLIEYEQMKLAAARLDALPLLGRDFLRTQ
                     VTVDESAAERLPDVDPIDLRNAWIEIVKRARLNQHHLISREHLSVREHMSIVLRALQG
                     RRFALFEDLFDAARGAPVVVVTFIALLELAREHLLEVTQAEAFAPIYVRLAYQAT"
     gene            complement(2503..3147)
                     /locus_tag="VF308_02335"
     CDS             complement(2503..3147)
                     /locus_tag="VF308_02335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011463234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEX7435519.1"
                     /translation="MKSATLALVAAAVVLSAGCSHPQRSRDLANPAVSATTMAQQVCS
                     NCHGMTGSSVSPNFPNLAGQQEAYFVAQLEGFRSHRRSDPAGFEYMWGLSRSLTDDQI
                     KGLATYYANQAPEAQPIEGDRGRFEAGKAIFSGGVADKGVPACKTCHGAEGKGDATFP
                     RLAGQHADYVMKQLLVFQRTDERPEGGVMKSVAHELTAQDIRNVAAYLQALPRL"
     gene            complement(3185..4648)
                     /locus_tag="VF308_02340"
     CDS             complement(3185..4648)
                     /locus_tag="VF308_02340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014897576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HEX7435520.1"
                     /translation="MDMFEVEGNNATARRLRALLAVSALCLTLLPNVAGAIPAFNRQT
                     GQNCMACHAGGQFPELTPYGRMFKLSGYTIGERALPISAMAVATLSKVADTSKSDDPG
                     GDFQKNNRAILATASLLLGGKVTDNVGAFAQVTYDPYATQDANGNFHGHSNADNIDIR
                     LVDRFISDKRDLIVGLSANNNPSVSDPWNTVAAWMQYVPVPSPTSSRFIDGNSPYPGF
                     AAGGNIAGLTAYAFWNRMIYAELGGYGTSRGPTSFMSAGLDNASTTKLHGVNPYWRLA
                     VNREWGPHSLMVGTSGMVARVYDDPLDTSDPASTHRFTDLMIDSQYQYLLDPHAVTAQ
                     LVYARDRHRYPAALADQPASFFDATGAATLANSNAVDTTNVLRAKVSYVYQAKYGGAL
                     GLFNLTGTTNTANQTAGFDATGTLVKTNGAASNLSGNPATRGLTLEAFWMPIQYLRVG
                     AQYTAYSRFNGASTNYDGFGRNARDNNTLFLYTWLAY"
     gene            complement(4789..>6172)
                     /locus_tag="VF308_02345"
     CDS             complement(4789..>6172)
                     /locus_tag="VF308_02345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX7435521.1"
                     /translation="LAPQFALFVVFVLLVFVPAVAAVAAQHSDLSWQLAVVMAVAMAM
                     TLLLGRNYRQSFDRIVGLKLRTEGLAVHLRAEKVVAEAARQEAEIANRAKTQFFTAAS
                     HDLRQPLHAMGLFAEALRARAHDPEVAQLVNSINESVDALEGLFSELLDITRIDSGGV
                     EVTPENFELADIFRKVRLHFEPAAFEKGLALRIRGGKHVALADPLLVERIVRNLVSNA
                     IRYTRDGSVLLSCRRRGDRLLLQVWDTGPGIRAEECARIFEEFYQVPGAPAVAVEQKK
                     GLGLGLAIVKRLCALMVAPLDLRSEEGRGSVFTVELPLGKGPRTTARSIPGKGPIGIT
                     LDGRLIVIVEDEPAVREGLEVLLRGWGAAIVSLDSVGAAGAWAQAADAAAPPSLVIAD
                     YRLDNGETGVAAIDAVRERFGRNVPAIVVTGSSMTGHDKEALEHDFHLLIKPVLPNKL
                     RAMIAFKLAR"
BASE COUNT          955 a         2146 c         2089 g          982 t
ORIGIN      
        1 agtcgttcaa cctcagctat tcggggcacg acctgtgagc tgccgtcgcg agcgcgagac
       61 ctagacgcca tgtggaagat cctccgccag atcggccgcg ccggcatccg cagcgaagcc
      121 gcgcccccgt acgacgacgc gctgcgggtc gaggccgagc agatccagcg tgacctgctc
      181 gccaccctgg gccgtgccct cgcgatccgc caggtcgacg ccggttcgtg caacggctgc
      241 gagctcgaga tccacgcgct cgacaatccc tactacaacc tcgaggggct cggcatccgg
      301 ttcgtcgcca gcccccgcca cgccgacctg ctcctggtga ccggcccggt gtcgcgcaac
      361 atggagcttg cgttgtcgcg cacctacgaa gcgacaccgg cacccaagct ggtcgtcgcg
      421 gtcggcgact gcgggtgcga cggcggcatc ttcggcacga gctacgcgac ctgcggcggg
      481 gtcgcgagcg tcctcccggt cgacgtcgcc gtgccgggct gcccgccggc gccgatcgag
      541 atcctgcgcg gcatcctgac ggcggtccgc cgcggccaac cgaaatagtc cacggatcgg
      601 cacctgccgg cgcgaaggcc gtgcgatatc ctcgtccccc aggacgaaag agccggtggg
      661 atacctcgaa gaactgaagc gccaggccga cgcggcgctc gcccagcaaa cccaggacat
      721 cggcgcgctg cagcgcaatg ccttgctcac cgactccgcc tgccagtcgg cggcgcgcta
      781 cttcggcacg ctcgcgcgcc agctcaacgt cctgcagccg gtctcgaagg cggtctggcg
      841 cttcgacaac cggacttcgt tcagccagct ccgcttcacc gactttcgcg ccgactcgcg
      901 cctcaagaag ctgcgcgatg ccgaggtctt cgaccacgtc gtcctcagct tcgccgccaa
      961 gaccggaacg cgcgtcacga tcgccaagga cttcccgccc gagatcgaga agctcgaggc
     1021 gcgcctgcgc cagtgcggcg ggctctacga cagcgaagtg atccgcgacc ccgagaacgg
     1081 ccgcttcgtc gagaagcgct tcgagctcct cgccgatttc cagagcagcg ttcgcctgct
     1141 gcccgaccac gacgccggcc gtgtcacctt ccacatcgcc aacctcgacg gcttcgagac
     1201 ggtgagcgtg gtcttcccgg cgttcgaggt cggcaccgct cggctcgacg agctggcgcg
     1261 ctggatcaac ggcgagccgc acgccttcct gcgcgacggc cagcacctgc gccgggtggt
     1321 cgcctgagac atccggcgcc cggccggcgc ccgccggccg cttagactcg ctcttttcgc
     1381 cccgtctgac gccatgccct ggttctggaa gccgtacacc tccgacatca cctcgttcat
     1441 cgacgggctg aaggcgaaga agccgaccct cgaggacgag cagcggcgcg gccgcgccat
     1501 cttctgggac cggcgcatcg accccaccgc cgagggcgaa taccaggacg cgcgcgtccc
     1561 gcagcagccc tacgtgtatc agaaccgcgt gcgctgagcg cgccgcggga ccgccgatgg
     1621 aagatctcgc cgaggtcgcg gaagaggagg tggtcgacag catcgccgtg gcgcgcctgt
     1681 acggcgagcc tttgttcgac ctgccgcacg acctctacat cccgcccgac gcgctcgagg
     1741 tctttctcga ggccttcgaa gggccgctcg acctgctgct ctacctgatc cggcgccaga
     1801 acttcaacat cctcgacatc ccgctggcga gcgtgactcg ccagtacctc acctacgtcg
     1861 agcagatccg gtcgcgcaac ctggagctcg ccgccgacta cctgctgatg gcggcgatgc
     1921 tgatcgagat caagtcgcgc atgctgctgc cgccgaggaa gagcgccgac ggcaaggagc
     1981 ccgacgatcc gcgcgccgag ctcgtgcgcc ggctgatcga gtacgagcag atgaagctcg
     2041 ccgccgcccg gctcgacgcg ctgccgctgc tcgggcgcga cttcctgcgc acccaggtca
     2101 cggtcgacga gtcggccgcc gaacgcctcc ccgacgtcga ccccatcgac ctgcgcaatg
     2161 cctggatcga gatcgtcaag cgcgccaggc tcaaccagca ccacctcatc tcgcgcgagc
     2221 acctgagcgt gcgcgagcac atgagcatcg tcctgcgcgc gctgcaggga cgccgcttcg
     2281 ccctcttcga ggacctcttc gacgcggcgc gcggcgcacc ggtcgtcgtc gtcaccttca
     2341 tcgccctgct cgagctggcg cgcgagcacc tgctcgaggt gacgcaggcc gaggccttcg
     2401 caccgatcta cgtcaggctc gcctaccagg cgacctgagc cggggcggcg ccgcgacagg
     2461 cgcccgcccg cccgcgcgcg ccggcattcg gccgtcgcct cttcagagac ggggcaaggc
     2521 ctgcagatag gccgccacgt tgcggatgtc ctgcgcggtg agttcgtgcg ccaccgactt
     2581 catgacgccg ccctcgggtc gctcgtcggt gcgctggaac accagcaact gcttcatcac
     2641 gtagtccgca tgctgacccg cgaggcgcgg aaaggtcgcg tcgcccttgc cttcggcacc
     2701 gtgacaggtc ttgcacgccg gaacgccttt gtctgccacg ccgccggaga agatggcctt
     2761 gccggcctcg aacctgccgc ggtcgccctc gatcggctgt gcttccggcg cctggttggc
     2821 gtagtaggtg gcgagcccct tgatctggtc atcggtcagg ctgcggctca ggccccacat
     2881 gtactcgaaa cccgccggat cgctgcggcg atggctccga aagccctcga gctgggccac
     2941 gaagtacgcc tcttgctgcc cagccaggtt cgggaagttg ggcgacaccg agctgcccgt
     3001 catgccgtgg cagttggaac acacctgttg cgccatcgtg gtagcggaga ccgccgggtt
     3061 cgccagatcg cgcgaacgtt gcggatggga acagccggcc gacagcacga ccgctgcggc
     3121 gacgagggcg agagtcgcgg acttcatgaa atacctccgg atgcagggac cgcgcacgac
     3181 gcgctcagta cgccagccac gtgtagagga agagcgtgtt gttgtcgcgg gcgttgcggc
     3241 cgaagccgtc gtagttcgtc gacgcgccgt tgaagcggct gtacgccgtg tactgcgcgc
     3301 cgacgcgcag gtactggatc ggcatccaga acgcctccag cgtgaggccc cgagtcgccg
     3361 ggttgccgga caggttgctg gcggcgccgt tggtcttgac gagcgtgccg gtggcgtcga
     3421 agccggcggt ctggttggcc gtgttggtgg tgccggtgag gttgaacagc cccagggcgc
     3481 cgccgtactt cgcttggtag acgtagctca ccttcgcgcg cagcacattc gtggtgtcga
     3541 cggcgttgga gttggcgagc gtggcggcgc cggtcgcatc gaagaaggac gccggctggt
     3601 cggccagtgc cgcgggatag cggtggcgat ctcgcgcgta gaccagctgc gccgtcaccg
     3661 cgtgcgggtc gagcaggtat tggtactggc tgtcgatcat gaggtcggtg aaccggtgcg
     3721 tgctcgccgg gtccgacgta tcgagcggat cgtcgtacac gcgcgcgacc attcccgagg
     3781 tgccgaccat gaggctgtgc ggcccccatt ctcgatttac cgccaggcgc cagtaagggt
     3841 tgacgccgtg cagcttggtg gtgctcgcgt tgtcgagccc ggcgctcatg aacgaggtcg
     3901 gtccgcgcga cgtgccgtag ccgccgagct cggcgtagat catccggttc cagaacgcgt
     3961 aggctgtcag cccggcgatg ttgccgcccg ccgcgaagcc cgggtacggc gaattgccgt
     4021 cgatgaagcg gctgctcgtc ggactgggca cgggcacgta ctgcatccag gcagcgaccg
     4081 tgttccatgg atccgatacc gacgggttgt tgttcgcgct gaggccaacg atcagatcgc
     4141 gcttgtcgct gatgaagcga tcgacgaggc gaatgtcgat gttgtcggcg ttactgtgac
     4201 cgtggaagtt gccgttcgca tcctgggtgg cgtaggggtc gtaggtgacc tgcgcgaacg
     4261 caccgacgtt gtcggtgacc ttgccgccga gcaggaggct ggcggtggcg aggatggcgc
     4321 ggttgttctt ctggaagtcg ccgcccggat cgtcggactt cgaggtgtcg gccaccttcg
     4381 acagggtggc cacggccatc gccgaaatcg gcagcgcgcg ctcgccgatc gtgtagccgc
     4441 tcagcttgaa catccgtccg tagggcgtga gctccggaaa ctgtccgccc gcgtggcagg
     4501 ccatgcagtt ctgcccggtc tggcggttga aggccgggat cgcgcctgca acgttgggca
     4561 gcagcgtcag gcaaagcgcc gaaaccgcaa gcaaggcgcg caatcgtcgc gcggtggcgt
     4621 tgttgccttc gacttcgaac atatccattt ccttgctccg tcagcgatgg ccgccatctg
     4681 gcgcccttgc cggcaagcca gcgttgacgc agatcaaggt cggcgtgcca cgaccgcgcc
     4741 gcggccgagg ggctcggcgc ggaagtcacg caccggctct gcccgcccct acctggccag
     4801 cttgaaagcg atcatcgccc gcagcttgtt gggcagcacc ggcttgatga ggagatggaa
     4861 gtcgtgctcg agggcttcct tgtcgtgccc ggtcatgctg ctgccggtga cgacgatcgc
     4921 cggaacgttg cggccgaagc gctcgcgcac cgcgtcgatc gcggcgacgc cggtctcgcc
     4981 gttgtcgagc cggtaatcgg cgatgacgag cgaaggcggc gccgcggcgt cggccgcctg
     5041 cgcccaggca ccggcggcgc cgacgctgtc gagcgagacg atcgccgcac cccaacccct
     5101 gagcagcacc tcgaggcctt cgcgcaccgc cggctcgtcc tcgacgatga cgatcaggcg
     5161 gccgtccagg gtgatgccga tcggcccctt gcccggaatc gatcgtgccg tcgttcgtgg
     5221 ccccttgccg agcggcagct cgaccgtgaa gaccgagcca cggccttcct cggagcgcag
     5281 gtcgagcggt gcgaccatca gcgcgcacag ccgcttgacg atcgccaggc cgaggccgag
     5341 acccttcttc tgctcgaccg cgaccgctgg cgcgcccggc acctgataga actcctcgaa
     5401 gatgcgcgcg cactcctcgg cgcgaatgcc ggggcctgtg tcccacacct ggagcagcag
     5461 ccgatcgccc cggcgccggc agctgagcag caccgaaccg tcgcgggtgt agcggatcgc
     5521 gttcgagacc aggttgcgga cgatccgctc gacgagcagc ggatcggcga gggcgacgtg
     5581 cttgccgccg cggattcgca gcgccaggcc cttctcgaac gcggccggct cgaaatgcag
     5641 ccggaccttg cgaaagatgt cggcgagctc gaagttctcg ggggtgacct cgacgccgcc
     5701 gctgtcgatg cgcgtgatgt cgagcagctc ggagaacagg ccctcgagcg cgtcgaccga
     5761 ttcgttgatg ctgttgacga gctgcgcgac ctcggggtcg tgggcgcgcg cgcgcagcgc
     5821 ctcggcgaac aggcccatcg cgtgcagcgg ctggcgcagg tcgtggctcg cggcggtgaa
     5881 gaactgggtc ttggcgcggt tggcgatctc ggcttcttgg cgcgccgcct cggccaccac
     5941 cttctcggcg cgcaggtgca ccgcgaggcc ttcggtcctg agcttgaggc cgacgatgcg
     6001 gtcgaacgac tggcggtagt tgcggccgag gagcagggtc atcgccatcg ccaccgccat
     6061 cacgaccgcc agctgccagc tcagatccga gtgctgcgcc gcgacggcgg cgaccgccgg
     6121 cacgaacacg agcaggacga agacgacgaa gagcgcgaac tgcggcgcca gg
//
LOCUS       DASVHM010000120         2733 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1307948, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000120 DASVHM010000000
VERSION     DASVHM010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2733
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1307948"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..657)
                     /gene="groEL"
                     /locus_tag="VF308_02350"
     CDS             complement(<1..657)
                     /gene="groEL"
                     /locus_tag="VF308_02350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012655678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEX7435522.1"
                     /translation="MAAKDVSFGGDARARMVEGVNILANAVKVTLGPKGRNVVLERSF
                     GGPTVTKDGVSVAKEIELKDRLQNMGAQMVKEVASKTSDIAGDGTTTATVLAQAIVRE
                     GMKYVAAGMNPMDLKRGIDKAVTALVEQLKKQSKPTTTSKEIAQVGTISANSDEEVGK
                     IIAEAMDKVGKEGVITVEDGKSLNNELDIVEGMQFDRGYLSPYFINNPDKQVALLDDA
                     L"
     gene            complement(677..967)
                     /locus_tag="VF308_02355"
     CDS             complement(677..967)
                     /locus_tag="VF308_02355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010462231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEX7435523.1"
                     /translation="MKLRPLHDRVIVKRVEQETKTASGIVIPDNAAEKPDQGEVLSVG
                     PGKRNERGDITTMNVKAGDRVLFGKYSGQTVKVDGDELLVMREEDLFAVVEK"
     gene            1169..1768
                     /locus_tag="VF308_02360"
     CDS             1169..1768
                     /locus_tag="VF308_02360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020228492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX7435524.1"
                     /translation="MARPLIALDADGVLLDFHLGYAGAWARAFGSPPVERDPLAYWPI
                     DRWQVERLDDERRAHFRRYFDERFWSSVPAIEGALDACHRLHDAGYDLVCVSALDAEH
                     EAARLRNLRDHGFPIERVIATGNAPGERSPKADAIAALSPEAFVDDYLPYLRGVPGHV
                     HTALVLRALNGSPNEGPELSLARSVHDDLPGFADFWLKR"
     gene            complement(1778..>2733)
                     /locus_tag="VF308_02365"
     CDS             complement(1778..>2733)
                     /locus_tag="VF308_02365"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HEX7435525.1"
                     /translation="SIEALDKSFGAILDISKLDAGAVEPHVQSFPIRDLFRRLQMSFA
                     GQAEEAGLQLRFRPGGKVVTSDPQLLERILANLVQNGLRYSRPGAGVLVGARRRRGGI
                     SLEVWDAGIGISEAELPKVFAEFYQVANPERDRSKGLGMGLAIVKRLSELLGHELTVR
                     SRPGAGSVFRVWVARVHAEQMDEFTVGAETLPGALDDTRAVLLLDDEEAIRTSVGELL
                     AEWGYEVIAVSTTADALAAAKRRDGMIDVIISDLRLRDGEDGLRAIEQIRQACGFDVP
                     ALLVTGDTAPDQVLRVHESGHIVLYKPVQPKELLTLLKKLA"
BASE COUNT          385 a          956 c          886 g          506 t
ORIGIN      
        1 cagcgcatca tccagcagcg cgacttgctt gtcgggattg ttgatgaagt acggtgacag
       61 gtagccgcgg tcaaactgca tgccttcaac gatgtcgagc tcgttgttga gcgacttgcc
      121 gtcctcgacg gtgatgacgc cttccttgcc gaccttgtcc atcgcctcgg cgatgatctt
      181 gccgacttcc tcgtcgctgt tcgccgagat cgttccgacc tgggcgattt ccttcgacgt
      241 cgtcgtcggc ttcgactgct tcttgagctg ctcgacgagc gccgtgacgg ccttgtcgat
      301 gccgcgcttg aggtccatcg ggttcatgcc cgcggccacg tacttcatgc cttcacggac
      361 gatggcctgc gccagcaccg tcgccgtggt cgtgccgtca ccggcgatgt ccgaggtctt
      421 ggaagcgact tccttgacca tctgggcgcc catgttctgg agcctgtcct tgagctcgat
      481 ctctttcgcg accgagacac cgtccttggt gaccgtcggg ccgccgaacg agcgctcgag
      541 caccacgttg cggcccttgg ggccgagcgt gaccttgacc gcgttggcga ggatgttcac
      601 accctcgacc attcgcgcgc gggcatcgcc gccgaatgaa acgtcttttg ctgccatttg
      661 aattctccgt tgcctcttac ttctctacga cggcgaagag atcctcttcg cgcatcacca
      721 ggagctcgtc gccgtcgacc ttgacggtct ggccgctgta cttgccgaac aggacgcggt
      781 cgccggcctt gacgttcatc gtcgtgatgt cgccgcgctc gttgcgcttg ccggggccga
      841 ccgacaggac ttcgccctgg tcgggcttct cggcggcgtt gtcgggaatg acgattcccg
      901 aggcggtctt ggtttcctgc tccacgcgct tgacgatcac gcgatcgtgc aacggacgaa
      961 gtttcatggc atctccttga tgggtcggat ccttgcggat gggtcaatga ccgcgcgcgc
     1021 cttggcgccg ccgggcactg caatgtatta gcactcatct ctttcgagtg ctagcagaag
     1081 gattatgggg gagtgcaggg cgggtttcaa gggcacccgc cgtctttgtc gcgccaacga
     1141 cgccccggca cttcgctaga gtcctcccat ggcccgcccc ctgatcgccc tcgacgccga
     1201 cggcgttctc ctcgacttcc acctcggcta cgccggggcc tgggcgcggg cgttcggcag
     1261 cccgccggtc gagcgcgacc cgctcgccta ctggccgatc gaccgctggc aggtcgagcg
     1321 cctcgacgac gagcggcgcg cccacttccg gcgctacttc gacgagcggt tctggtcgtc
     1381 ggtgccggcg atcgaaggcg ccctcgatgc ctgccaccgg ctccacgacg ccggctacga
     1441 cctggtctgc gtgtcggcgc tcgacgccga gcacgaggcg gcgcgcctgc gcaacctgcg
     1501 cgaccacggc tttccgatcg agcgggtcat cgccaccggc aacgctcccg gcgagcgcag
     1561 ccccaaggcc gacgccatcg ccgcgctgag ccccgaagcg ttcgtcgacg actacctgcc
     1621 gtacctgcgc ggcgttccgg gccacgtcca caccgccctc gtgcttcgtg cactgaacgg
     1681 cagcccgaac gagggccctg agctctcgct ggcacgctcg gtccacgacg acctgcccgg
     1741 cttcgccgac ttctggctga agcgttgacg gatcgcctca ggcgagcttc ttcagcaagg
     1801 tcagcagctc cttcggttgc accggcttgt agagcacgat gtggccgctc tcgtggacgc
     1861 gcagcacctg gtcgggcgcg gtgtcgccgg tgacgagaag cgccgggacg tcgaagccgc
     1921 aggcctggcg gatctgctcg atcgcgcgca ggccgtcctc gccgtcgcga aggcgcaggt
     1981 cggagatgat cacgtcgatc atcccgtcgc ggcgcttcgc cgcggcgagc gcgtcggcgg
     2041 tcgtcgacac ggcgatgact tcgtagcccc actcggcgag gagctcgccg acgctggtgc
     2101 ggatcgcctc ctcgtcgtcc agcaggagga cggcgcgggt gtcgtcgagc gcgcccggca
     2161 gggtctcggc gccgacggtg aactcgtcca tctgctcggc atggacgcgt gccacccaga
     2221 cccggaagac gctgccggca ccgggtcgcg aacgcacggt gagctcatgg ccgagcagct
     2281 cgctcagccg cttgacgatc gccaggccca tgccgaggcc cttgctgcga tcgcgctccg
     2341 ggttggcgac ctggtagaac tcggcgaaga ccttgggcag ctcggcctcg ctgatgccga
     2401 tcccggcgtc ccagacctcc aagctgatgc cgccgcgccg ccgccgcgcg ccgaccagca
     2461 ccccggcgcc cgggcggctg tagcgcaggc cgttctggac caggttggcg aggatccgct
     2521 cgagcaactg cgggtcgctc gtcacgacct tgccgccagg ccgaaagcgc agctgcagcc
     2581 ccgcttcctc ggcctggccg gcgaagctca tctgcaggcg ccggaacagg tcgcggatcg
     2641 gaaaggactg gacgtgcggc tcgaccgcgc cggcgtcgag cttcgagatg tcgaggatcg
     2701 cgccgaacga tttgtcgagc gcctcgatcg atc
//
LOCUS       DASVHM010000121         1538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1019142, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000121 DASVHM010000000
VERSION     DASVHM010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1019142"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1538
                     /locus_tag="VF308_02370"
     CDS             <1..>1538
                     /locus_tag="VF308_02370"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEX7435526.1"
                     /translation="DANDAAARLFGFADAADLTGFPIADLLADGEHRARAAERIAALE
                     RMPVGEGIPVSDYQTRAKNGRQISIQATAVRVDTATGPATLSILFDITVRQRVEAALR
                     RSEAMLSQLFATSPDCIALSEIESGRHTLVNAAFTRLTGYTSREAVGRSATDLGIWHD
                     LKDRDRLHALIELHGKVVDLPVDIRTKAGARVSMLLSAARFAMDSRDYLVVNARDVTE
                     AERTRLEHAAILERASIGIAFTRDRRFVQANPRFEQMFGWGFGELTGKPDSVVWAGDA
                     DYAEMGRLAGPLLSMGQQFEIEREMRRKDGSLFWCRLLAQVVDRSHPSQGGTIWIADD
                     VTERRRLDLALASARDAAEAASQAKSAFLANTSHEIRTPLNGLLGLARLALRSDIDAE
                     RRQHYLAQILDSAQGLAVILSDILDLSKIEAGKIALEEVPFVLREPLAGVVQSYRTMA
                     EGKGLELQLTVADDLPATVMGDPVRVRQILANFVTNAIKFTERGCVRIEATTEPAGAV
                     RLAV"
BASE COUNT          245 a          554 c          516 g          223 t
ORIGIN      
        1 cgacgccaac gacgcggcgg cgcgcctctt cggctttgcc gacgccgccg acctgaccgg
       61 ctttccgatc gccgacctgc tcgccgatgg cgagcaccgc gcgcgcgccg ccgagcgcat
      121 cgccgcgctc gaacgcatgc cggtcggcga gggcatcccg gtcagcgact accagacccg
      181 cgcgaagaac ggccgccaga tcagcatcca ggcgaccgcg gtgcgggtcg ataccgcgac
      241 cgggccggcc acgctctcga tcctgttcga catcaccgtg cgccagcgcg tcgaggcggc
      301 gctgcgccgt tccgaagcga tgctgtcgca actcttcgcg accagccccg actgcatcgc
      361 gctttccgag atcgagagcg gcagacacac gctggtgaac gcggccttca cgcgcctgac
      421 cggctacacc tcgcgggaag cagtcggccg cagcgccacc gatctcggga tctggcacga
      481 cctgaaagac cgtgaccggc tgcacgcgct gatcgagctg cacggcaagg tcgtcgacct
      541 gccggtcgat atccgcacca aggcgggcgc gcgggtttcg atgctgctct cggcggcccg
      601 cttcgcgatg gacagtcgcg actacctcgt cgtcaacgcc cgcgacgtga ccgaagccga
      661 gcgcacgcgg ctcgaacatg cggcgatcct ggaacgcgcg tcgatcggca tcgcgttcac
      721 gcgcgaccgc cgcttcgtcc aggcgaatcc gcgcttcgag cagatgttcg gctggggctt
      781 cggcgagctc accggcaagc ccgactcggt ggtctgggcc ggcgacgccg actatgccga
      841 gatggggcgc ctggccggcc cgctgctgtc gatggggcaa cagttcgaga tcgagcgtga
      901 aatgcggcgc aaggacggta gcctcttctg gtgtcgcctg ctggcgcagg tggtggaccg
      961 atcgcacccg agccagggcg gcacgatctg gatcgccgac gacgtgaccg agcgacgacg
     1021 tctcgacctg gctctggctt cggcgcgcga cgcggccgaa gcggcgagcc aggccaagag
     1081 cgccttcctc gccaacacca gccacgagat ccgcaccccg ctcaacggcc tgctcggcct
     1141 cgcgcgcctg gcgctacgca gcgacatcga cgccgagcgg cgccagcatt acctcgcaca
     1201 gatcctcgac agcgcgcagg gtctcgcggt gatcctgtcc gacatcctcg acctgtcgaa
     1261 gatcgaggcc ggcaagatcg ccctcgagga ggtgcccttc gttctgcgcg agcctctcgc
     1321 cggcgtggtc cagtcgtacc ggacgatggc cgaaggcaag ggcctcgagt tgcaactcac
     1381 cgttgccgac gatctgccgg cgacggtgat gggcgatccg gtgcgggtgc gccagatcct
     1441 cgccaacttc gtcaccaacg cgatcaagtt caccgagcgc ggctgcgtgc gcatcgaggc
     1501 gacgaccgag cccgccggtg cggtgcggct tgcggtga
//
LOCUS       DASVHM010000122         4676 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_586171, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000122 DASVHM010000000
VERSION     DASVHM010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4676
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_586171"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1804)
                     /locus_tag="VF308_02375"
     CDS             complement(<1..1804)
                     /locus_tag="VF308_02375"
                     /inference="COORDINATES: protein motif:HMM:NF025761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HEX7435527.1"
                     /translation="MSKLLSGYSPPADRYDELLDGQGVPRAQWQAFLASLDSRDTPQI
                     GDTLSLVEREIRENGVTYNVYADEKGADRPWEVDPLPLMLPASEWEDIEAGIAQRAEL
                     LNAVLADIYGAQALLRSGAIPPSVVFGHSGFLHQAQGIRPPGGAHLFHYAADLARSPD
                     GHWWVVSDRTQAPSGAGYALENRLIVSRVFPQLFHDLQVQHLAAFFAAQRDALARWAP
                     RGDGPPLIVLLTPGPYNETYFEHALLARYLGFALVEGSDLTVRDDCVWMKTIDGLRRV
                     HAIVRRQDDDYCDPLELRSDSALGIAGLTECARCGNVMLANALGSGVLESGALLGYLP
                     GLSRELLGEPLKLPSVATWWLGEPAALADASERLDRLIIKPLERSPREPPLFAGELSA
                     DELVLLRARIAARPHRYVAQEWVHVSQAPVLERGPPETLAARTVGLRAFAVATPSGWH
                     VMPGGLTRVALDGDSRDIAMQRGGRSKDTWVLSDAPVNSSFTLLTATVDADDLVSSNA
                     TLASRAAENLYWFGRYGERCDASVRLLRVALSHVIEDTGGNADGAEPALALAHRLGLI
                     DSAGDPAAQLRRAATHPQRAMAERLRQLSRVAFNL"
     gene            complement(1812..>4676)
                     /locus_tag="VF308_02380"
     CDS             complement(1812..>4676)
                     /locus_tag="VF308_02380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014899661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEX7435528.1"
                     /translation="MEHGVQTPELTLQNASGSCRDSAWLSVQLLRHLGLAARFVSGYL
                     IQLKSDVKSLDGPSGTEVDFTDLHAWCEVFLPGAGWIGLDPTSGLYAGEGHIPLACSP
                     EPSSAAPISGTLDPCETTFEHHMSVRRVWEAPRVTLPYSELQWGAIDELGKQVDADLR
                     RMDVRLTQGGEPTFVSVDDREGGEWTTEAMGPTKRGLSAELMERLRKHYGAGGLVHFG
                     QGKWYPGEQLPRWSLNLFWRKDGEPIWTHPEMFASEHQDYGATEVEARRFLEGVARRM
                     GVDPDNVFPAYEDTWYYLWRERKLPSNVDPFDARLADPFERERLRKVFSQGLDKIVGH
                     GLPIARSPTGLPRWRSGPWFLRDKRCYLVPGDSALGYRLPLDSQPWARPVDMPWIYPP
                     DQTQAFPRLATHRQHQLGQAMRLRQALAGSTVLHAADTVHAAAGAPQPFESAPFVTRT
                     AISTEPRAGRLYVFMPPTEALDDYLELVAAVEDTALEMKLPVVLEGYEPPKDPRLATL
                     RVTPDPGVIEVNIHPAHSWAELVDQTTHLYHAARETRLATEKFMLDGRHTGTGGGNHF
                     VLGGATVADSPFLRRRDLLASMVAYWHNHPALSYLFSGLFVGPTSQAPRIDEARNDSV
                     YEIEIAFAELRRTTAILGDACPPWLIDRLLRNLLIDVSGNTHRAEFCIDKLYSPDGPT
                     GRLGLLEMRAFEMPPHARMSLTQQLLMRSLVARFWKAPYRPERLKRWGTELHDRFMMP
                     HFVWQDLGDVIEDLRTFGYDMRAEWFAPHLEFRFPRLGDFAASGVEVELRLALEPWHV
                     LGEEGGPGGTARYVDSTLERVQVAATGLVGDRHVLTCNGRKLPMQPTGAVGEFVAAVR
                     YRAWQAPSALHPTIDPHVPLTFDLFDTWVGRSVGGCQYHVAHPGGVNYASFPVNAYEA
                     EARRLARFFRTGHTPGAMAPPRDEHNPNFPFTLDLRTPAG"
BASE COUNT          727 a         1591 c         1707 g          651 t
ORIGIN      
        1 gcaggttgaa ggcgacgcgc gagagctggc gcaggcgctc ggccatggcc cgctgcggat
       61 gcgtcgccgc gcgtcggagc tgcgccgccg ggtcgccggc gctgtcgatc aggccgaggc
      121 gatgggcaag cgccagcgcc ggctcggcgc cgtcggcatt cccgcccgtg tcctcgatca
      181 cgtggctgag cgcgacgcgc aggagccgga ccgaggcgtc gcagcgctcg ccatagcggc
      241 cgaaccagta caggttttcg gcagcgcgcg aggcgagcgt cgcgttcgac gaaaccagat
      301 cgtcggcgtc gacggtggcc gtgagcagcg tgaacgacga gttgacgggc gcgtcggaaa
      361 gcacccaggt gtccttcgac cggccgccgc gctgcatcgc gatgtcgcgc gaatccccgt
      421 cgagggcgac tcgcgtcagc ccgccgggca tgacgtgcca gccgctcggc gtcgcgaccg
      481 cgaaagcgcg caggccgacc gtgcgcgcgg ccagcgtttc cgggggtccg cgctcgagca
      541 ccggggcctg cgacacatgc acccattcct gggccacgta gcgatgcggc cgcgccgcga
      601 tgcgggcgcg cagcagcacg agctcgtcgg cagacagctc gcctgcgaag agcggcggct
      661 cgcgcggcga acgctcgagc ggcttgatga tcaggcggtc gagccgctcc gaggcatcgg
      721 cgagcgccgc cggttcgccg agccaccagg tcgcgaccga cggcagcttc agcggttcgc
      781 cgagcagctc gcggctcagc ccgggcagat agccgagcag cgcacccgac tcgagcacgc
      841 ccgagccgag cgcgttggcc agcatcacgt tgccgcaccg ggcgcactcg gtgaggccgg
      901 cgatgccgag cgccgagtcg gagcgcagct cgagcggatc gcagtagtcg tcgtcctggc
      961 gccggacaat cgcgtgcacc cttctcaagc cgtcgatcgt cttcatccag acgcaatcgt
     1021 cgcggactgt gaggtcactg ccctcgacca gcgcaaagcc gagatagcgc gccagcagcg
     1081 catgttcgaa gtaggtctcg ttgtaggggc ccggcgtgag cagcacgatc agcggtggcc
     1141 cgtcgccgcg cggcgcccag cgcgccaatg cgtcgcgttg cgccgcgaag aacgcggcca
     1201 gatgctggac ctgcaggtca tggaagagct gcggaaagac acgcgagacg atgagccggt
     1261 tctcgagcgc atagcccgcc cccgagggcg cctgcgtgcg gtcgctgacc acccaccagt
     1321 gcccgtccgg cgagcgcgcc aggtcggcgg cgtagtggaa cagatgggcg ccgccgggcg
     1381 ggcgaatgcc ctgcgcctgg tgcaggaagc cgctgtgccc gaacaccacc gagggcggga
     1441 tcgcacccga gcgcagcagc gcctgcgcgc cgtagatgtc ggccagcacc gcgttgagaa
     1501 gttcggcgcg ctgggcgatg ccggcctcga tgtcctccca ctcggaggcc ggcagcatca
     1561 ggggcagcgg gtcgacctcc cacggccggt cggcgccctt ctcgtcggca tagacgttgt
     1621 aggtgacgcc gttctcgcgg atctcgcgct cgaccagcga cagggtgtcg ccgatctgcg
     1681 gcgtgtcgcg cgagtcgagc gaggcgagga aggcttgcca ctgcgcgcgc ggcacgccct
     1741 gcccgtcgag cagttcgtcg tagcgatcgg cgggcggcga ataccccgac agcagcttgc
     1801 tcatcggcgg ctcatcccgc aggtgtgcgc aggtcgagcg tgaaggggaa gttcgggttg
     1861 tgctcgtcgc gcggcggcgc catcgccccc ggggtatggc cggtgcggaa gaagcgcgcg
     1921 aggcggcgcg cctcggcctc gtaggcgttg accggaaagc tcgcgtagtt caccccgccc
     1981 ggatgggcga cgtgatactg gcagccgccg accgagcggc cgacccaggt gtcgaacagg
     2041 tcgaacgtga gcggcacgtg cggatcgatc gtcgggtgca gcgccgaggg cgcctgccag
     2101 gcgcgatagc gcaccgccgc gacgaattcg ccgaccgcgc cggtcggctg catcgggagc
     2161 ttgcgcccat tgcaggtgag cacgtgacgg tcgccgacca ggccggtggc ggcgacctgc
     2221 acccgctcga gcgtcgaatc gacatagcgc gccgtgccgc cggggccccc ttcctcgccc
     2281 aggacatgcc acggctcgag ggcgaggcgc aattcgacct cgaccccact cgcggcgaag
     2341 tcgccgaggc gcggaaaacg aaactcgaga tgcggcgcaa accattcggc gcgcatgtcg
     2401 tagccgaacg tgcgcaagtc ctcgatcacg tcgcccaggt cctgccagac gaagtgcggc
     2461 atcatgaagc ggtcgtgcag ttcggtgccc cagcgcttca ggcgctcggg ccggtacggc
     2521 gccttccaga agcgcgcgac cagggagcgc atcagcaact gctgcgtcag gctcatgcgc
     2581 gcgtgcggcg gcatctcgaa ggcgcgcatc tcgagcaggc cgaggcgacc ggtcggcccg
     2641 tcgggcgaat acagcttgtc gatgcagaac tcggcgcggt gggtgttgcc cgagacgtcg
     2701 atcagcaggt tgcgcaagag gcgatcgatc agccacggcg ggcaggcgtc gcccaggatc
     2761 gcggtggtcc ggcgcaattc ggcgaacgcg atctcgatct cgtagaccga atcgttgcgc
     2821 gcctcgtcga tgcgcggcgc ctggctcgtc ggcccgacga acaagcccga gaacaggtag
     2881 ctcagcgccg ggtggttgtg ccagtacgcg accatgctgg cgagcaggtc gcggcggcgc
     2941 aggaacggcg aatcggcgac cgtcgcgccg ccgagcacga aatggttgcc gccgccggtg
     3001 ccggtgtggc ggccgtcgag catgaacttc tcggtcgcga gccgcgtctc gcgcgccgcg
     3061 tggtagaggt gggtcgtctg gtcgacgagc tcggcccagc tgtgggccgg gtggatgttg
     3121 acctcgatca cgcccgggtc cggcgtgacg cgcagcgtcg caaggcgcgg atccttgggc
     3181 ggctcgtagc cttcgagcac gaccggcagc ttcatctcga gcgccgtgtc ctcgaccgcg
     3241 gcgacgagtt cgaggtagtc gtcgagggcc tcggtcggcg gcatgaacac atagagccgg
     3301 ccggccctgg gctcagtgct gatcgcggtc cgcgtcacga agggcgccga ctcgaacggc
     3361 tgcggcgcgc cggcagcggc gtgaaccgtg tccgcggcat gcaagaccgt cgaacctgcc
     3421 aaggcctggc gcaggcgcat cgcctgcccg agctggtgct gcctgtgggt cgcgaggcgt
     3481 ggaaaggcct gggtctggtc gggcggatag atccagggca tgtcgactgg ccgcgcccac
     3541 ggctgcgaat cgagcggcag gcgatagccg agggccgaat cgccgggaac gagatagcag
     3601 cgcttgtcgc gcagaaacca aggaccggag cgccagcgcg gcagaccggt gggactgcgc
     3661 gcgatcggca gcccgtgtcc cacgatcttg tcgagcccct ggctgaagac cttgcgcaag
     3721 cgctcgcgct cgaacggatc ggcgaggcgc gcgtcgaagg gatcgacgtt cgacgggagc
     3781 ttgcgctcgc gccagaggta gtaccaggtg tcctcgtagg ccgggaagac attgtccgga
     3841 tcgacgccca tgcgacgcgc cacgccctcc aagaagcgcc gcgcctcgac ctcggtcgcg
     3901 ccgtagtcct ggtgttcact cgcgaacatt tccggatggg tccagatagg ctcgccgtcc
     3961 ttgcgccaga acaggttcag cgaccagcgc ggcaattgct cgcccggata ccacttgccc
     4021 tggccgaagt ggacgaggcc gcccgcgccg tagtgcttgc gcagccgctc catcaactcg
     4081 gcgctcaggc cgcgcttggt cgggcccatg gcctcggtgg tccactcgcc accctcgcgg
     4141 tcgtcgaccg agacgaaggt cggctcgccg ccctgcgtga ggcgaacgtc catgcggcgc
     4201 aggtcggcgt cgacctgctt gccaagctcg tcgatcgcgc cccactgcag ctcgctgtac
     4261 ggtagcgtca cgcgcggcgc ttcccagacg cggcgcaccg acatgtggtg ctcgaacgtc
     4321 gtttcgcacg ggtcgagcgt gccgctgatc ggcgccgccg acgacggctc gggcgagcag
     4381 gcgagcggga tgtggccctc gccggcgtaa aggcccgagg tcggatcgag gccgatccag
     4441 ccggcgcccg gcaggaagac ctcgcaccac gcatgcaggt cggtgaagtc gacctcagtg
     4501 ccgctcggcc cgtcgagcga cttgacgtcg ctcttcagct ggatgaggta gcccgagacg
     4561 aagcgcgccg ccaggccgag gtggcgcagc agctgcaccg agagccaggc gctgtcgcgg
     4621 cacgagccgc tcgcgttctg cagggtcagc tcgggcgtct gcacgccgtg ctccat
//
LOCUS       DASVHM010000123         3567 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_875304, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000123 DASVHM010000000
VERSION     DASVHM010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3567
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_875304"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2040)
                     /locus_tag="VF308_02385"
     CDS             complement(<1..2040)
                     /locus_tag="VF308_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEX7435529.1"
                     /translation="MARGRFAPDAGRAIGAWLLLGVVSYLLLPWYFLADKTVLQALPG
                     VWGSAETASGAVQAAVRGKPWLWAAPVGLALALIGWRADSWRVQGALLTAGAVVALGG
                     LLLSGFAIGAKGWAYEGLSAAFGPLPSGQAGIGLGGALTLLAALMLLGAGIARLGAFR
                     GDLFTACSVVLCTALLLLFVALPVAKALAGAFLDEAGRISPGALAERIGHERTWGLGC
                     LAGGVRCGVAWNTLFLALLTAAGTTLLGTMIALIAERGAQRLKRPLNALALLPIITPP
                     FVVGLGLILLFGRAGIVNQLLESAFGVTPTRWFYGLPGLWLAQLFAFTPIAFMIVRGV
                     VAGISPALEEAAQTLRASRRTAFFTVTLPLLKPGLANAFLVGFIESIADFGNPIVVGG
                     QFSVLSTDIFFAIVGAQYDQGRAASLSLILSAFALAVFWAQQRLLGRTNYTTMTGKGD
                     GGSPMALPAGLRRAFLCIVLPWLAFTIVVYVFAFLGGFVQTWGRDYTPTLRHFITAFD
                     LQRGNADVGAGLVFAGTAWNSLFTTLKLSAIAAPLCAALGLLIAWLLARTTFRGQHAF
                     EFGALLAFAIPGTVLGVSYILAFNVPPFELTGTGLIIVLCFVFRNLPVGVRAGSAAFR
                     QIDRSLDEASTMLRASTATTLRRVVLPLLKPALVAALVYSFVRSMTTVSAVIFLVT"
     gene            complement(2062..3015)
                     /locus_tag="VF308_02390"
     CDS             complement(2062..3015)
                     /locus_tag="VF308_02390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019447853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7435530.1"
                     /translation="MNAKAWASAVIAAMTFTGSVALAQVPADLAEKLRAIGPVINPPA
                     TTPLYAPRVIELEPYANVTVTRDLRYGPADRNLLDVFVSTEASAQPRPVLIFVHGGGF
                     VAGNRRAPGSPFYDNVMLWAVRNDMVGVNMTYRLAPQSPWPAGAEDVGLGVKWVHEQI
                     AAHGGDPKRVYILGHSAGAIHVADYLANERFQVVGGSGLAGAMLLSGLYEVTPETAVP
                     AYYGTDASRYAEQSSLNGLLRTRVPLWVGSAELDPPAFVAQAARLTEALCQASRCPAA
                     AKFAGHSHLSEAYSIHTDDRSVSGALAKFLPRSSAPRTWVP"
     gene            complement(3064..>3567)
                     /locus_tag="VF308_02395"
     CDS             complement(3064..>3567)
                     /locus_tag="VF308_02395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEX7435531.1"
                     /translation="TMVATLVQLMGEDKAFEYLKALHKNVSQYTRSGTGPIKAVARGE
                     TAVSISFVHDGPGEKLQGFPVETVTPSEGTGAEIGSMSIVKGARNLEQAKKFYEWALT
                     PQAQQFGAATKQYQLPSNKATPIDPHVPDFKKIRFIDYDYAKYGASTERRRLIAKWEK
                     DVNSLPR"
BASE COUNT          642 a         1213 c         1242 g          470 t
ORIGIN      
        1 ggtgacgaga aagatcaccg ccgacaccgt tgtcatcgag cgcacgaagc tgtagacgag
       61 cgccgcgacg agcgccggct tgagcagcgg cagcacgacc ctgcgcaagg tcgtcgcggt
      121 cgaagcgcgc agcatcgtcg acgcctcgtc gagcgacctg tcgatctgcc ggaacgcggc
      181 gctgccggcg cgcacgccga ccggaaggtt gcggaacacg aagcacagca cgatgatgag
      241 cccggtgccc gtcagctcga acggcggcac gttgaaggcg aggatgtagc tcacgccgag
      301 gaccgtaccg ggaatcgcga acgcgagcaa ggcgccgaac tcgaacgcat gctggccgcg
      361 aaacgtcgtg cgcgcgagca gccaggcgat cagcaggccg agcgcggcgc agagcggcgc
      421 ggcgatggcg gagagcttca gggtcgtgaa gagcgagttc caggcggtcc cggcgaagac
      481 caggccggcg ccaacatccg cgttgccgcg ttgcaggtcg aaggcggtga tgaagtggcg
      541 cagggtcggc gtgtagtcgc ggccccaggt ctgcacgaag ccgccgagaa aggcgaagac
      601 atacacgacg atcgtgaagg cgagccaggg cagcacgatg cagaggaacg cccggcgcag
      661 gcccgctgga agcgccatcg gcgagccgcc gtcgcccttg ccggtcatcg tcgtgtagtt
      721 cgtcctgccg agcagccgct gctgggccca gaacaccgcc agcgcgaagg cgctgaggat
      781 cagcgagagc gaggccgccc ggccctggtc gtactgggcg ccgacgatcg cgaagaagat
      841 gtcggtcgaa agcaccgaga actggccgcc gacgacgatc gggttgccga agtcggcgat
      901 gctctcgatg aagccaacca ggaacgcgtt cgccaggccg ggcttcaaga gcggcaacgt
      961 gaccgtgaag aaggcggtac ggcggctcgc gcgcagggtc tgcgccgcct cttcgagcgc
     1021 cgggctgatg ccggcgacga cgccgcgcac gatcatgaac gcgatcggcg tgaacgcgaa
     1081 cagctgggcc agccagaggc cgggaagccc gtagaaccag cgcgtcggcg tgacgccgaa
     1141 ggcgctttcg agcagctggt tgacgatccc ggcgcggccg aacagcagga tcagcccgag
     1201 cccgacgacg aacggcggcg tgatgatcgg cagcagcgcg agcgcgttga gcggccgctt
     1261 caggcgttgc gctccgcgct cggcaatgag cgcgatcatc gttccgagca gcgtcgtgcc
     1321 ggcagcggtg agcagcgcga gaaagagcgt gttccaggcg acgccgcagc gcacgcctcc
     1381 ggccaggcag ccgagtcccc aggtgcgctc gtggccgatg cgctcggcga gcgcgccggg
     1441 cgaaatgcgg ccggcttcat cgaggaaggc acctgccagc gccttcgcaa ccggcagcgc
     1501 gacgaagagc aacagcaatg cggtgcacag caccaccgag caggcggtga aaaggtcgcc
     1561 gcgaaaggcg ccgagccgcg cgatgccggc gcccagcagc atcagcgcgg ccagcagggt
     1621 cagcgcgccg ccgagaccga tgcccgcctg gcccgagggc agcggcccga acgcggcgct
     1681 gagcccctcg taggcccagc ccttggcgcc gatcgcgaaa ccgctcagca gcaacccgcc
     1741 gagcgcgacg accgcaccgg cggtcagcag cgcgccctgc acgcgccagc tgtcggcgcg
     1801 ccagccgatc agggcgaggg cgagcccgac cggcgccgcc cacagccagg gcttgccgcg
     1861 gaccgccgcc tggaccgctc cgctcgctgt ctcggcgctg ccccacacgc ccgggagcgc
     1921 ctgcaagacg gtcttgtcgg cgaggaaata ccacggcaag agcaggtacg acacgacgcc
     1981 cagcagcagc cacgcgccga tggcacgacc cgcgtcgggc gcaaaccggc ccctagccac
     2041 gcctgcacag ggtcatgggc atcagggcac ccaggtacgg ggagcggacg aacgcgggag
     2101 aaacttcgcc agcgcgccgc tcaccgaccg gtcgtccgta tggatcgagt acgcctcgga
     2161 gagatggctg tgccccgcga acttcgccgc agcgggacag cgcgaggcct gacagagcgc
     2221 ttcggtgagg cgcgcggcct gggccacgaa ggcgggcgga tcgagttccg ccgaaccgac
     2281 ccagagcggc acccgcgtcc gcagcaaacc gttcagcgac gactgctccg catacctcga
     2341 tgcatccgtg ccgtagtagg cgggcacggc cgtctcgggg gtcacttcgt agaggcccga
     2401 gagcagcatc gccccggcga gccccgaacc accgacgacc tggaaacgtt cgttcgcgag
     2461 gtagtcggcc acatggatcg cgccggccga gtgaccgagg atgtagacgc gcttcggatc
     2521 gccgccgtgc gcagcaatct gctcatgcac ccatttcacg ccgagaccga catcttcggc
     2581 gcccgccggc cacggacttt gcggcgcgag gcgatacgtc atgttcacgc cgaccatgtc
     2641 attgcgcact gcccacaaca tgacgttgtc gtagaacggg ctgccgggcg cacggcggtt
     2701 gccggcgacg aagcccccgc catgcacgaa gatcagcacc ggacgcggct gcgccgaggc
     2761 ctcggtcgaa acgaacacgt cgagcaggtt ccgatcggcg gggccgtagc gcaggtcgcg
     2821 cgtgacggtg acgttggcgt agggttccaa ctcgatgact cgcggcgcgt acagcggagt
     2881 ggtcgccggc ggattgatta ccgggccgat cgcccggagc ttctcggcca ggtcggcagg
     2941 cacttgcgcg agcgcgaccg aaccggtgaa cgtcatggcc gcgatgacgg ccgaggccca
     3001 ggctttcgcg ttcatctcca aactccttct ggcggcttgc atgatcaggc gccgcgcgga
     3061 ccgttaccgc ggcagcgaat tcacgtcctt ctcccacttc gcgatcaagc gtcgccgttc
     3121 cgtactcgcc ccgtacttgg cgtagtcgta gtcgatgaag cggatcttct tgaagtccgg
     3181 cacgtgcgga tcgatcgggg tcgccttgtt tgagggcagc tgatactgct tggtcgccgc
     3241 gccgaactgc tgggcctgcg gggtcagcgc ccattcgtag aacttcttgg cctgctcgag
     3301 gttgcgcgcg cccttgacga tcgacatcga gccgatctcg gcgccggtgc cttccgacgg
     3361 cgtcaccgtc tcgaccggaa agccctgcag cttttcgccc gggccgtcgt gcacgaagct
     3421 gatcgaaacc gcggtctcgc cgcgcgcgac cgccttgatc gggccggtac ccgaacgtgt
     3481 gtactgactc acgttcttgt gcagcgcctt caggtactcg aaggccttgt cctcgcccat
     3541 cagctgcacc agcgtcgcga ccatcgt
//
LOCUS       DASVHM010000124         2083 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_8742, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000124 DASVHM010000000
VERSION     DASVHM010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8742"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1374
                     /locus_tag="VF308_02400"
     CDS             <1..1374
                     /locus_tag="VF308_02400"
                     /EC_number="2.7.7.65"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HEX7435532.1"
                     /translation="VDSLTQLPTRLYFEDRLAAAATRADAKTSRLALLFVDLDGFKPV
                     NDTYGHSVGDMVLEQVGQRLKSLSRGKDVVARVGGDEFLLLLTNVNSEDSIAHVATRL
                     IGGLSQAYAVDGREVIISCSVGIALYPDGCSYGKLIARADAAMYAAKHSGGSTHCFYS
                     PAMDADAERQFDLLRDLRKALRNKEMELFYQPKIDVKSGKVTATEALLRWKHPSRGVI
                     LPSVFIPIAERFGLIVALGNWVIEDACRQSRAWRDKGLRMRVAINLSAHQMRQDDIVE
                     RITDALQRHRIHPSLLTCEITETAAMEDTKTTQETFRRLGELGTHLSIDDFGTGYSSL
                     SYLRKLPAEELKIDRSFIMDLEHSADARAVVDAVIKLAHALGLKVVAEGVENQRQQQI
                     LIDMACDELQGFLFAKPMSARALQLWAINDRTESAVFRPSLFDETRPSEITLERVSIG
                     QRGVSSA"
     gene            1471..1728
                     /locus_tag="VF308_02405"
     CDS             1471..1728
                     /locus_tag="VF308_02405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435533.1"
                     /translation="MTDRIFSAVLAFMVLGGGTLAIGSALFGFDRPAASMQLQSAVVE
                     LPRVEITARRANVVMAARNDLNPGLKTRVDCDVAPQQPRHI"
     gene            complement(1719..>2083)
                     /locus_tag="VF308_02410"
     CDS             complement(1719..>2083)
                     /locus_tag="VF308_02410"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEX7435534.1"
                     /translation="LKRRAGADPAGRRHLQWIKASVGTSVRLIPVEQIAFLRSDEKYT
                     LVVWEGGEALIRKTIRELADELDPESFAQIHRSVIVNLRRVSQVDRGVNETAEVSLKD
                     RKDVLAVSRSFVRVFRQM"
BASE COUNT          359 a          734 c          653 g          337 t
ORIGIN      
        1 gtcgacagcc tgacgcagtt gccgacccgc ctctatttcg aggatcgcct cgccgccgcg
       61 gcgacccggg ctgacgccaa gacctcacgc ctcgccttgc tcttcgtcga cctcgacggc
      121 ttcaagcccg tcaacgacac gtacgggcac agcgtcggcg acatggtgct cgagcaggtc
      181 gggcagcgcc tgaagtcgct gtcgcgcggc aaggacgtgg tcgcccgcgt cggcggcgac
      241 gaattcctgc tgctcctcac gaatgtcaac agcgaggatt cgatcgccca tgtcgcgacc
      301 cgcctcatcg gcgggctgag ccaggcctac gcagtggacg gccgcgaagt gatcatctcg
      361 tgctcggtcg gcatcgcgct ctatcccgat ggctgcagct acggcaagct gatcgcgcgc
      421 gccgacgcgg cgatgtacgc ggcgaagcac tcgggcggct ccacgcactg cttctattcg
      481 ccggcgatgg acgccgacgc cgagcgccag ttcgacctgc tgcgcgacct gcgcaaggcg
      541 ctgcgcaaca aggaaatgga gctgttctat cagccgaaga tcgacgtgaa gagcggcaag
      601 gtcacggcga ccgaggcact gctgcgctgg aagcacccgt cccgcggcgt catcctgccg
      661 agcgtcttca ttccgatcgc cgagcgcttc gggctgatcg tcgcgctcgg caactgggtc
      721 atcgaggacg cctgccggca gagccgggcc tggcgcgaca agggcctgcg catgcgcgtc
      781 gcgatcaacc tgtcggcgca ccagatgcgc caggacgaca tcgtggagcg catcaccgac
      841 gccctgcagc gccaccgcat ccacccgtcg ctgctgacct gcgagatcac cgagacggcg
      901 gcgatggaag acaccaagac gacccaggaa accttccgcc gcctcggcga gctcggcacg
      961 cacctgtcga tcgacgactt cggcaccggc tattcgagtc tgagctacct gcgcaagctg
     1021 ccggccgagg aactgaagat cgaccgcagt ttcatcatgg acctcgagca cagcgccgac
     1081 gcccgcgccg tcgtcgacgc cgtgatcaag ctcgcccatg cgctcggcct gaaggtcgtc
     1141 gccgagggcg tcgagaacca gcgccaacag cagattctca tcgacatggc ctgcgacgag
     1201 ttgcagggct ttctcttcgc caagccgatg tcggcgcgcg cgctgcagct gtgggcgatc
     1261 aacgaccgga ccgaatcggc ggtattccgg ccatcgctct tcgacgagac acgcccgtcg
     1321 gagatcacgc tcgagcgcgt gtccatcggt cagcgcggcg tttcatccgc gtagaacggc
     1381 gctttgtcgc aagccggttg gcacggcgcc gaccgatgcc tagagttcgc tccaacgcag
     1441 cgtgaatcgc cgcaccacag ggagcctcac atgaccgacc gcatcttctc agccgtactc
     1501 gccttcatgg tgctcggcgg cggcacgctc gcgatcggct cggcgctgtt cggattcgat
     1561 cgcccggccg cgtcgatgca gcttcagagc gccgtggtcg aactgccgcg cgtcgaaatc
     1621 acggcacggc gcgcgaacgt cgtgatggcc gcgcgcaacg acctcaatcc gggtttgaag
     1681 acccgcgtcg attgcgacgt cgcgccgcag cagccgcgtc acatctgacg gaacacgcgg
     1741 acgaagctgc ggctcaccgc cagcacgtcc ttgcgatcct tcaagctcac ctcggcagtc
     1801 tcgttcacgc cgcgatcgac ctggctcacc cgacgcaggt tgacgatcac cgagcggtgg
     1861 atctgggcga acgattccgg atcgagttca tcggcgagtt cgcgaatcgt cttccttatc
     1921 agcgcctcgc cgccctccca gacgacgagc gtgtatttct cgtcggagcg caagaacgcg
     1981 atctgttcga ccgggatcag gcgcacgctc gtgcccaccg aggccttgat ccactgcagg
     2041 tggcgccggc ccgccggatc ggcgccggcg cgccgcttca act
//
LOCUS       DASVHM010000125         3895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_225710, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000125 DASVHM010000000
VERSION     DASVHM010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3895
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225710"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /locus_tag="VF308_02415"
     CDS             complement(<1..324)
                     /locus_tag="VF308_02415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEX7435535.1"
                     /translation="MAGDSKKLQPIIIKRIRKGGHNKHGGAWKIAYADFVTAMMAFFL
                     LMWLLGSTTEGDKKGIADFFNAPLKVALMGGSGAGDSSHVVRGGGQDLTRTTGQVKDG
                     DVPAKR"
     gene            complement(340..1203)
                     /gene="motA"
                     /locus_tag="VF308_02420"
     CDS             complement(340..1203)
                     /gene="motA"
                     /locus_tag="VF308_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEX7435536.1"
                     /translation="MVVLIGYGVALGCIFGAYIIHGGNIGVILHALPTELMAILGGSL
                     GAFAVNNQPKVLKATLAAIPGVLKGSKYSKARYMELMALLYDILQKARKEGLMAIEKD
                     VEDPAGSSLFQKYAVVGSDHHVVEFITDYLRMMVSGNLNAHEIESLMDSEIETHHAEA
                     HGPVNALGRLAGALPAFGIVAAVLGVVNTMGSVGQPPAILGGMIGSALVGTFLGILLA
                     YAVVEPLGGLIEQKVDEGSKELQCIKTTLLASMQGYAPQVAVEFGRKVLYSKDRPTFA
                     ELEGHVKGKKA"
     gene            complement(1480..2016)
                     /gene="flhC"
                     /locus_tag="VF308_02425"
     CDS             complement(1480..2016)
                     /gene="flhC"
                     /locus_tag="VF308_02425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045893 - positive regulation of
                     DNA-templated transcription [Evidence IEA];
                     GO_process: GO:1902208 - regulation of bacterial-type
                     flagellum assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhC"
                     /protein_id="HEX7435537.1"
                     /translation="MRSKSILTEAKQISRAVALIGLGARLQVLESETDLSYERLLRLY
                     KEVAGKSPSKGQLPFSTDWFMTWQPNIHASLFLNIHEYLNKSSALDEIDAVIKGYQLY
                     QEETSAQGLEALLSVTRAWRLVKFVDNGMLTMTKCSKCGGQFVTHPHEIARHYQCALC
                     NPPARAGKGKAAGAIRMH"
     gene            complement(2019..2342)
                     /gene="flhD"
                     /locus_tag="VF308_02430"
     CDS             complement(2019..2342)
                     /gene="flhD"
                     /locus_tag="VF308_02430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045893 - positive regulation of
                     DNA-templated transcription [Evidence IEA];
                     GO_process: GO:1902208 - regulation of bacterial-type
                     flagellum assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhD"
                     /protein_id="HEX7435538.1"
                     /translation="MNADQILSEIREANLSYLMLAQSLIRADGEQALYRLGISEESAA
                     LIRLLTPAQMMKIAAGNTLLCRFRMDDDMVWGLLTSHGKSAANDSTNRLHASILLAGR
                     HQEAA"
     gene            2611..3852
                     /locus_tag="VF308_02435"
     CDS             2611..3852
                     /locus_tag="VF308_02435"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX7435539.1"
                     /translation="MTSSLAPQVSFCIPTYNRCRYLASLLESLVVQLAGFPYSFELVI
                     ADNGSTDQTAATIAAFADRLPIRALRHASNIGGYANWQFVLSQAAGRYVVYVADDDSI
                     LGDQVASAVAKMDADPELAVVYAPWLLFDLVAQQSQGQFFTVPHDLRIERNEHGQLLD
                     HILRHHIFPEIQIIRRDVLQATMPRVNEHAFFAFVHAADYLRQGAVLIQQDPFYVSIT
                     RYFADESREQIGNSEVEHAWDRYRGGLEYMIARTGVDITAEERFGLHARINQMIASRM
                     AVAIRLRHAGKRSAIDTYYLAMRLRGLGYEKLLPASLATLASEAMVEFVLRDGEIHRG
                     VRQLICVGTTPREERDYLVRQARVPVEFLTDLQRCEHLSDAVLFIRDDAVKAQHLDSV
                     EAAARNVRIVRERDLADKFGL"
BASE COUNT          609 a         1323 c         1273 g          690 t
ORIGIN      
        1 cctcttggcg gggacgtcgc cgtccttgac ctggccggtc gtccgcgtca ggtcctggcc
       61 accgccgcgc accacgtgcg acgagtcgcc ggcgccgctg ccgcccatca gcgcgacctt
      121 gagcggcgcg ttgaagaaat cggcgatgcc cttcttgtcg ccctcggtcg tcgagccgag
      181 cagccacatg aggaggaaga acgccatcat cgccgtcacg aagtcggcgt aggcgatctt
      241 ccaggcaccg ccgtgcttgt tgtgcccgcc cttgcggatg cgcttgatga tgatcggctg
      301 cagcttcttc gagtcgcccg ccatgtcagt ctcccggcct cacgccttct tgcctttgac
      361 gtggccttcg agctcggcga acgtcggccg gtccttcgag tacagcacct tgcggccgaa
      421 ctcgacggcg acctgcggcg cgtagccctg catgctcgcg agcagcgtcg tcttgatgca
      481 ctgcagctcc ttcgagccct cgtcgacctt ctgctcgatc aggccgccga gcggctcgac
      541 cacggcgtag gcgagcagga tgccgaggaa ggtgccgacc agcgccgagc cgatcatgcc
      601 gccgaggatc gccggcggct ggccgaccga gcccatcgtg ttgacgacgc cgagcacggc
      661 cgcgacgatg ccgaacgccg gcaacgcgcc ggcaagccgg ccgagcgcgt tgaccggccc
      721 gtgcgcctcg gcgtggtggg tctcgatctc gctgtccatc aggctttcga tctcgtgcgc
      781 gttcaggttg cccgagacca tcatgcgcag gtagtcggtg atgaactcga cgacgtggtg
      841 gtcggagccg acgacggcgt acttctggaa cagcgaggac ccggccgggt cctcgacgtc
      901 cttctcgatc gccatcaggc cttccttcct cgccttctgc aggatgtcgt agagcagcgc
      961 catcagctcc atgtagcgcg ccttcgagta cttcgatccc ttcagcacgc ccgggatcgc
     1021 cgcgagggtc gccttcagca ccttcggctg gttgttgacg gcgaaggcgc cgagcgaacc
     1081 gccgaggatc gccatcagct cggtcggcag ggcgtgcagg atcacgccga tgttgccgcc
     1141 atggatgatg taggcgccga agatgcagcc gagggcaacg ccgtaaccga tcagaacgac
     1201 catggtttta gaagaattcc gtatcggcca gatgccgacg cgccgggccc gtgcagttat
     1261 cggcggtgac cgacctctct tgagtgtgcc gcgccgggcg cgcgtcgatc gcggcaactg
     1321 gcccggaatc cgggcggaaa taaaaaagcg ggtcccgagg gacccgcatt caaagcacag
     1381 tgatgtgctg gaggagacaa gcaaggacta tgaacggaga gccctgtctt tcggctgagt
     1441 caggacagat cttgagcaga cggaggccgg tttcgcgaac tagtgcatgc gaatcgcgcc
     1501 ggccgccttg cctttgccgg cgcgcgccgg cgggttgcac agggcgcact ggtagtgtcg
     1561 ggcgatctcg tgcgggtggg tgacgaactg gccgccgcac ttcgagcact tcgtcatggt
     1621 cagcatgccg ttgtcgacga acttgaccag gcgccaggcg cgggtgaccg acagcagcgc
     1681 ctcgaggccc tgcgccgagg tctcttcctg gtacagctgg tagcccttga tcacggcgtc
     1741 gatctcgtcg agcgcggacg acttgttcag gtactcgtgg atgttgagga agagcgaggc
     1801 gtggatgttg ggctgccagg tcatgaacca gtcggtcgag aacggcagct ggcccttgct
     1861 cggcgacttg ccggcgactt ccttgtagag gcgcagcagc cgctcgtacg acaagtcggt
     1921 ctccgactcg agcacctgca ggcgcgcgcc caggccgatc agcgcgaccg cgcggctgat
     1981 ctgcttggct tcggtgagga tgctcttgct gcgcatgact acgctgcctc ttgatgacgg
     2041 ccggcgagca ggatcgaggc gtggaggcgg ttcgtgctgt cgttggcggc gctcttgccg
     2101 tggctggtga gcaggcccca gaccatgtcg tcgtccatgc ggaagcggca caggagcgtg
     2161 ttgccggcgg cgatcttcat catctgcgcc ggcgtcagca gccggatcag cgcggcgctc
     2221 tcctcgctga tgccgagcct gtagagggcc tgctcgccat cggcgcggat gaggctctgc
     2281 gccagcatca ggtaggaaag gttggcttcg cggatttcgc tgaggatctg gtctgcgttc
     2341 atgaggtgct ccgttgcttg ctgtgtgttc ccgcaaggtc ctggccttgc gatggaatga
     2401 attctgaaga gacgagaagg ccgcgaccat caggtcatct cggtcgctga agtccagctt
     2461 cttccatggc gggtgtcagg gaacttccta cagccgccgc aggctcgcgg cggcgaaaag
     2521 ggccccccga ggcggtctct tcggcgcttt cgtgccgggc gtcgcctcgg aaaatggccc
     2581 atcgacgccc ctccgcaccg cggcctcccc atgacaagct ctctcgcccc tcaggtcagc
     2641 ttctgcatcc ccacctacaa ccgctgccgc tacctggcgt cgctgctcga gagcctggtc
     2701 gtgcagctgg ccggcttccc gtattccttc gagctggtga tcgccgacaa cggctcgacc
     2761 gaccagaccg ccgcgacgat cgccgccttc gccgaccgcc tgccgatccg cgcgctccgc
     2821 cacgccagca acatcggcgg ctatgccaac tggcagttcg ttctgtcgca ggcggccggt
     2881 cgctacgtcg tctacgtcgc cgacgacgac agcatcctcg gcgatcaggt cgccagcgcg
     2941 gtcgccaaga tggacgcgga ccccgagctg gccgtcgtct acgcgccctg gctgctcttc
     3001 gacctggtcg cgcagcagtc gcagggccag ttcttcaccg tcccgcacga cctgcgcatc
     3061 gagcgcaacg agcacggcca gcttctcgac cacatcctgc gccaccacat ctttcccgag
     3121 atccagatca ttcgccgcga cgtcctgcag gcgacgatgc ctcgcgtcaa cgagcacgcg
     3181 ttcttcgcct tcgtccatgc cgccgactac ctgaggcaag gcgccgtgct gatccagcag
     3241 gatccgttct acgtctcgat cacgcgctac ttcgccgacg agtcccgcga gcagatcggc
     3301 aacagcgagg tcgagcacgc ctgggaccgc tatcgcggcg gcctcgagta catgatcgcg
     3361 cgcaccggcg tcgacatcac cgccgaggag cgcttcgggc tgcacgcgcg aatcaaccag
     3421 atgatcgcgt cgcgcatggc ggtggcgatc cggcttcgcc atgccggcaa gcgtagcgcc
     3481 atcgacacct actacctggc catgcgcctg cgcggcctcg gctacgagaa gctcctgccg
     3541 gcgtccctgg cgacgctggc ctcggaggcg atggtcgagt tcgtgctgcg cgacggcgaa
     3601 atccatcgcg gcgtccgcca gctgatctgc gtcggcacga cgccgcgcga ggagcgcgac
     3661 tacctcgtcc gccaggcgcg cgtgccggtc gagttcctca ccgacctgca gcgctgcgag
     3721 cacctgtccg acgccgtgct gttcatccgc gacgatgccg tcaaggcgca gcacctcgac
     3781 agcgtcgaag cggcggcgcg caacgtgcgc atcgttcgcg agcgcgatct ggccgacaag
     3841 ttcggcctct gaggcgggca gcgcggccgg tgccgcgcgc ggggccgccg cctca
//
LOCUS       DASVHM010000126         2643 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_225726, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000126 DASVHM010000000
VERSION     DASVHM010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2643
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225726"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..615
                     /locus_tag="VF308_02440"
     CDS             <1..615
                     /locus_tag="VF308_02440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel domain-containing
                     protein"
                     /protein_id="HEX7435540.1"
                     /translation="LLATATAVCFGACAADQSASNDQVVVPQVDRRDVKLPRFPSNDF
                     EIGAFVGTYATQNFGTSAVAGLRAGYHITEDFFVEGVLAQTKVSDEMFRQVLPGGIFP
                     DKKEKLTYYNLSAGYNVLPGEIFLGGTRAKPSQFYLIGGVGSTKFDQQRRPTFNVGFG
                     LRVYLIDRVALQVDMRDHAFSLDLLGKRQSTQNLELTGGLAVFF"
     gene            635..1153
                     /locus_tag="VF308_02445"
     CDS             635..1153
                     /locus_tag="VF308_02445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEX7435541.1"
                     /translation="MSTTLQAILLRTLRLALGAALAATAVNAVPAITPAKAAPDFTLH
                     TMGGPNLRLQEQRGRVVMVNFWATWCGPCRQEMPQLNRLYEKYRASGFVLLGVNVDDD
                     ALKAADVAAKLGVKFPVLLDTDKAVSRLYDLSTMPSTVLIDRDGKVRYVHRGYLTGYE
                     DNYEKQIRELLK"
     gene            1150..1380
                     /locus_tag="VF308_02450"
     CDS             1150..1380
                     /locus_tag="VF308_02450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4266 domain-containing protein"
                     /protein_id="HEX7435542.1"
                     /translation="MKTRRMFAAAVLLGAALLAGCAIQPWVKPYERERLADPIMKFSR
                     DTLPDKHVEHVRDVREGARGATGVQGGGCGCN"
     gene            1367..2461
                     /locus_tag="VF308_02455"
     CDS             1367..2461
                     /locus_tag="VF308_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3570 domain-containing protein"
                     /protein_id="HEX7435543.1"
                     /translation="MAATSLWRRLAALLGGVLAASGARAVDLPEDRAEAMLHSYSGGG
                     VTANGPALLVRKSVVDRVSLGATVYVDAVSNASIDVVTTASPYREVRTEYGFSADYVY
                     RDSKVTLATSSSHEPDYTANSTSLDVSQEVFGGMTTVSLGFTRGADQVGKHGAPEFSD
                     SARHWQYRLGATQILTPRWIMSANVEALADDGYLGSPYRVARVFGAAVPERNPRTRSA
                     RALKLRLIGDLGSRDAVHLDYRYFRDTWAIKAHTTEFGYSRYFGDAWLADTFVRFYSQ
                     RHALFYSDNATSETTYVSRNRQLSTFNDVGLGAKLAYTLKKVADRYDVKLNGAYEYVR
                     FRFSDFTDIRTGNPYAYNASVLQLYVSATF"
BASE COUNT          440 a          934 c          847 g          422 t
ORIGIN      
        1 ctcctggcca ctgcgacggc ggtctgcttc ggggcctgcg ctgccgacca atccgcctcg
       61 aacgaccagg tcgtggttcc gcaggtcgat cggcgcgacg tgaagctgcc gcgctttccg
      121 tccaacgatt tcgagatcgg cgccttcgtc ggcacctatg caacgcagaa cttcggcacc
      181 agcgccgtcg ccgggctgcg ggccggctat cacatcaccg aagacttctt cgtcgagggc
      241 gtgctggcgc agaccaaggt cagcgacgag atgttccgcc aggtgcttcc gggtggcatc
      301 ttccccgaca agaaagagaa gctgacctac tacaaccttt cggccggcta caacgtgctg
      361 cccggagaga tcttcctcgg cggcacacgc gccaagccct cgcagttcta cctgatcggc
      421 ggcgtcggca gcacgaagtt cgatcagcag cgccggccga ccttcaacgt cggcttcggc
      481 ctgcgcgtct acctcatcga ccgcgtcgcg ctgcaggtcg acatgcgcga ccacgccttc
      541 tcgctcgacc tgcttggcaa gcgccagagc acgcagaacc tcgagctgac cggcggcctc
      601 gcggtcttct tctgaacagg cagggcccga tctcatgagc acgacactgc aagcgatcct
      661 tctgcgcacc ctgcggctcg ccctgggcgc ggcgctcgcg gcgaccgcgg tcaacgcggt
      721 gccggcgatt accccggcaa aggcggcgcc cgacttcacc ctgcacacga tgggtggccc
      781 gaacctgcgc ctgcaggagc agcgcggccg ggtcgtgatg gtgaacttct gggccacctg
      841 gtgcggcccg tgccgccagg agatgccgca gctcaaccgg ctctacgaga agtaccgcgc
      901 ctcgggcttc gtgctgctcg gtgtcaacgt cgacgacgac gcgctgaagg ccgccgacgt
      961 ggccgccaag ctcggcgtga agttccctgt gctgctcgac accgacaagg cggtcagccg
     1021 cctctacgac ctgagcacga tgccctcgac cgtgctgatc gaccgcgacg gcaaggtccg
     1081 ctacgtgcac cgcggctacc tgaccggcta cgaggacaac tacgagaagc agatccggga
     1141 gttgctgaaa tgaagacgcg ccgtatgttc gcggccgccg tcctgctcgg cgccgcgctg
     1201 ctcgccggct gtgcgatcca gccctgggtc aagccctacg agcgcgaacg cctggccgat
     1261 ccgatcatga agttctcgcg cgacaccttg cccgacaagc acgtcgaaca cgtccgcgac
     1321 gtgcgcgagg gcgcgcgcgg cgcgaccggc gtccaagggg gtggctgtgg ctgcaactag
     1381 cctgtggcgg cgcctcgccg cccttctcgg cggcgtgctc gcggcgagcg gtgcgcgcgc
     1441 cgtcgatctg ccggaagacc gcgccgaggc gatgctgcac tcgtacagcg gcgggggcgt
     1501 gacggccaac ggcccggccc tgctggtgcg caagagcgtc gtcgaccggg tctcgcttgg
     1561 ggcgacggtc tacgtcgatg cggtcagcaa cgcctcgatc gatgtggtca cgacggcaag
     1621 tccgtaccgc gaggttcgca ccgaatacgg tttcagcgcc gactacgtct accgcgattc
     1681 gaaggtcacg ctggcgactt cgagcagcca cgagcctgac tacaccgcca acagcacgag
     1741 tctcgatgtc tcgcaggagg tcttcggcgg gatgacgacg gtgagcctcg gattcacgcg
     1801 cggcgccgat caggtcggca agcacggcgc gccggaattc tccgacagcg cgaggcactg
     1861 gcagtaccgg ctcggcgcga cccagatcct gacgccgcgc tggatcatga gcgcgaacgt
     1921 cgaggcgctc gccgacgacg gctacctcgg cagcccgtac cgcgttgcgc gcgtgttcgg
     1981 tgcggccgtg ccggagcgca acccgcgcac gcgctcggcg cgcgccctga agttgcgcct
     2041 gatcggcgac ctcggctcgc gcgacgcggt ccatctcgac taccgctact tccgcgacac
     2101 ctgggccatc aaggcgcaca ccaccgagtt cggctacagc cgttatttcg gcgacgcttg
     2161 gctggccgac accttcgtgc gcttctattc gcagcgccac gcgctcttct acagcgacaa
     2221 cgcgacgagc gagaccacct atgtctcgcg caatcgccaa ctcagcacct tcaacgacgt
     2281 cgggctcggc gccaagctgg cctatacgct gaaaaaggtc gccgaccggt acgacgtcaa
     2341 gttgaacggc gcgtacgaat acgtgcgctt ccggttcagc gacttcaccg acatccgcac
     2401 cggcaatccg tacgcctaca acgccagcgt gctccagctg tacgtgtcgg ccaccttctg
     2461 aaacgagtca cggcctatgt tcaatcgatg ctgcaagctg atcgccatcg ggctcctttt
     2521 cgaaatggtg ccggccgcgt ggagtgccga tgcggcgccg ccgggcgcgg tgaagaccgc
     2581 ggccgccgct ctggctccgg gcgcgacggc gagcacgtcc ggcaagaccg gcgccaccga
     2641 tgc
//
LOCUS       DASVHM010000127         3793 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_730758, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000127 DASVHM010000000
VERSION     DASVHM010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3793
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_730758"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3706)
                     /locus_tag="VF308_02460"
     CDS             complement(<1..3706)
                     /locus_tag="VF308_02460"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEX7435544.1"
                     /translation="MIHGIQRGAAEKLSFQAIVDRVGDKLRELFGTGDIHIVWSDRQG
                     FLQTPYAYQHGERVQIAPVRANLDGLVYKTLAAGRPVVANNAAEMAAFGLKRIAGTDQ
                     SLATAIVPFFSVERLLGVVSLQNFEREGAFGEAEVSLLQTIVTGLGVALENVRLFDET
                     EDALKRQTATAEILAVISESPTDVIPVFQAIAERARVLCRAEVGMTSRLADGNFHLLG
                     IDGASPEAERILRARFPVKLEDAPPQALRAIVERAPVQIPDVEADPTYRFKEGARQVG
                     FRSIMSVPLLLDGQAIGTIAVARSTPGLFPDAAVELLQTFARQAVIAIENVRLFNETK
                     GALERQTATAEVLQVISQSVADTAPVFEKIIQSCEKLFGVDYANVALIRDDGLMHLIQ
                     DSSVRSNDEMQDAKARIQSNFPRPVRNSIHGYAIHKGRVLHFPDVMHGPDVPKGLRAE
                     AVAEGVNYAAMFAPMFWEGQGIGTIGVHRIPPAPFSDNDIGLLKTFADQAVIAIQNAR
                     LFNETQQALEKQTATSEILRAISRSPTSTAPVFQAIAERAMGLCRAEYGFVFTFDGEW
                     IRMGCSVGISDAYLQGIASYFPMRPGGHSVTAQTIATGAVVNVADVLALAGNQLADAA
                     RTANFRAALGVPMLREGQCIGAIVVGRAAVGEFGGQEVELLTTFADQAVIAIENVRLF
                     NETKEALEQQTATAEVLEVISNSVADAQPVFDKILDSCQRLIDCSDLAVMTVDAQSMV
                     HLGSVRGDGGRQFQKFRPSPVEQTVIAEAMREQRVMSYPDTLHGDAVPEVIRRMAAKI
                     GNFSLAIAPMVWQGRGVGALFVARVGLQAFTLKELALLEMFADQAAIAIQNAALFHEA
                     QAARAAAESANDAKSSFLATMSHEIRTPMNAVIGMSGLLLDTPMNDEQRDYAATIRDS
                     GDALLTIINDILDFSKIEAGRMDIESHPFDLRDCVESALDLVSTRATEKHLDTAYVFE
                     GDVPVAISADLTRLRQILLNLLANAVKFTEAGEVVLTVTGAPAAPGRAGLTFSVRDTG
                     IGLTADGLSRLFQSFSQADSSTTRKYGGTGLGLAISRRLAELMGGRMWAESEGPGRGA
                     VFSFTIEAPIAEPPTSRRRDFVGAQPELQGRRMLIVDDNATNRRILSLQAGKWGMVAR
                     DTESPGEAIAWLSADAAAREAFDLAILDMHMPEMDGLELARRIRALDAKLPLVLFSSL
                     GRREAGDGESLFSAYLAKPLRQSQLFDTLVS"
BASE COUNT          579 a         1306 c         1292 g          616 t
ORIGIN      
        1 ggctcacgag cgtatcgaag agctgcgact ggcgcagcgg cttggccagg taggcgctga
       61 acagcgactc gccgtcgccg gcctcgcgcc ggccgagcga gctgaagagg acgagcggca
      121 gcttcgcgtc gagcgcgcgg atgcggcgcg cgagctcgag gccgtccatc tccggcatgt
      181 gcatgtcgag gatcgcgagg tcgaaggcct cgcgtgccgc agcgtccgcc gacagccagg
      241 cgatcgcctc gcccggcgac tcggtgtcgc gcgcgaccat gccccacttg ccggcctgca
      301 gcgagaggat gcgccggttg gtcgcgttgt cgtcgacgat cagcatgcgc cgaccctgca
      361 gctcgggctg ggcgccgacg aagtcgcggc ggcggctcgt cggcggctcc gcgatcggcg
      421 cctcgatcgt gaacgagaac accgcgcccc ggcccggccc ttcgctctcg gcccacatgc
      481 gcccgcccat gagctccgcg agccgccggc tgatggccag gccgaggccg gtgccgccgt
      541 acttgcgcgt cgtgctcgaa tcggcctgcg agaacgactg gaaaaggcgc gacaggccgt
      601 cggccgtgag cccgatgccg gtgtcgcgca cggaaaacgt gaggccggcg cggcccggcg
      661 cggccggcgc gccggtcacc gtcagcacga cctcgccggc ctcggtgaac ttcaccgcgt
      721 tggcgagcag gttgaggagg atctggcgca gccgcgtcag gtcggcgctg atcgcgacgg
      781 gcacgtcgcc ttcgaacacg taggccgtgt cgagatgctt ctcggtcgcc cgcgtgctga
      841 cgaggtccag cgccgactcg acacagtcgc gcagatcgaa cggatgcgac tcgatgtcca
      901 tccggccggc ctcgatcttc gagaagtcga ggatgtcgtt gatgatcgtg agcagggcat
      961 cgccggagtc gcggatggtc gcggcgtagt cgcgctgctc gtcgttcatc ggcgtgtcga
     1021 ggagcaggcc gctcatgccg atcaccgcgt tcatcggcgt cctgatctcg tgactcatgg
     1081 tggcgaggaa cgagctcttg gcgtcgttgg cggactcggc cgcggcgcgc gccgcctgcg
     1141 cttcgtggaa cagcgcggcg ttttggatcg cgatcgctgc ctggtcggcg aacatctcga
     1201 gcagagccag ctccttgagg gtgaatgcct ggaggccgac tcgggcgacg aacaaggcac
     1261 cgacgccgcg accctgccag accatcggcg cgatggcgag cgagaagttg ccgatcttgg
     1321 ccgccatgcg gcggatcacc tcgggcacag cgtcgccgtg cagcgtgtcc gggtagctca
     1381 tcacgcgctg ctcgcgcatg gcttctgcga tcaccgtctg ttcgaccggg ctgggccgga
     1441 acttctggaa ctggcgaccg ccatcgccgc gcaccgagcc gaggtggacc atcgactgtg
     1501 cgtcgaccgt catcaccgcc aggtccgagc agtcgatcag ccgctgacaa ctgtcgagga
     1561 tcttgtcgaa caccggttgc gcgtcggcca ccgaattgct gatcacctcg agcacctcgg
     1621 ccgtggcggt ctgctgctcc agcgcttcct tggtctcgtt gaacagccgc acgttctcga
     1681 tcgcgatcac ggcctggtcg gcgaaggtgg tcagcagctc cacctcctga ccgccgaact
     1741 cgcccaccgc ggcgcggccg acgacgatgg cgccgatgca ctggccttcg cgaagcatcg
     1801 gcacgcccag cgcggcgcgg aagttggccg tgcgcgcggc atctgccaac tggttgcccg
     1861 ccagcgcgag cacgtcggcc acgttgacca ccgcaccggt ggcgatggtt tgcgccgtca
     1921 ccgagtgacc gccgggccgc atcggaaaat acgacgcgat gccctgcagg taagcatcgg
     1981 aaatgccgac gctgcagccc atgcggatcc actcgccatc gaaggtgaag acaaagccgt
     2041 actcggcgcg acacagcccc atcgcgcgct cggcgatcgc ctggaacacc ggcgcggtgc
     2101 tggtgggcga gcgcgagatg gcacgcagga tctcgctggt ggcggtctgc ttctccagcg
     2161 cctgctgcgt ctcgttgaac aaccgcgcgt tctggatcgc gatcaccgcc tggtcggcga
     2221 aggttttcaa caggccgatg tcgttgtcgc tgaacggcgc gggcgggatg cggtgcaccc
     2281 cgatcgtgcc gatgccctgg ccctcccaga acatcggcgc gaacatggcg gcatagttga
     2341 cgccctccgc caccgcttcc gcgcgcagtc ccttcggcac gtcggggccg tgcatcacgt
     2401 ccgggaagtg cagcacccgg cccttgtgga tggcgtagcc gtggatcgag ttgcgtaccg
     2461 gccgtgggaa gttcgattga attcgcgcct tggcgtcctg catctcgtcg ttcgaccgaa
     2521 ccgacgaatc ctggatcagg tgcatcaacc cgtcgtcgcg gatcagcgcc acgttcgcat
     2581 agtccacgcc gaagagcttc tcgcagctct ggatgatctt ctcgaacacc ggtgccgtgt
     2641 cggccaccga ctggctgatg acctgcagca cctcggccgt ggcggtctgg cgctcgagcg
     2701 cccccttggt ctcgttgaag aggcgcacgt tctcgatcgc gatcacggcc tggcgcgcga
     2761 aggtctggag caattccacg gccgcatcgg gaaagagtcc cggcgtcgag cgagccacgg
     2821 cgatggtgcc gatcgcctga ccatcgagga gcagtggaac cgacatgatg ctgcggaatc
     2881 cgacttgcct ggcgccctcc ttgaagcgat aggtcgggtc ggcttcgaca tcgggaatct
     2941 gcaccggcgc acgctcgacg atggcccgga gcgcctgggg cggtgcgtct tccagcttca
     3001 cgggaaaccg ggcgcgcaga atccgctccg cctccggcga ggcgccgtcg atcccgagca
     3061 aatggaagtt gccgtcggcc aaccgtgacg tcattccgac ttccgcgcgg cacagcacac
     3121 gcgcgcgctc ggcgatggcc tggaataccg gtatcacgtc ggtgggcgat tcactgatca
     3181 cggccaggat ctccgccgtg gcagtctgcc gcttcagcgc gtcctcggtc tcgtcgaaca
     3241 gccgcacgtt ctcgagcgcc acgcccaggc cggtgacgat ggtctggagc aggctcacct
     3301 cggcctcgcc gaaagcgcct tcgcgctcga agttctgcag cgagacgacc ccgagcagcc
     3361 gctccacgga gaagaacggc actatggcgg tcgccaggct ctggtcggtg ccggcgatgc
     3421 gcttcaggcc gaacgccgcc atctcggccg cgttgttcgc gaccaccggg cggcctgcgg
     3481 cgagcgtctt gtagaccagc ccgtcgaggt tggcgcggac cggcgcgatc tgcacccgct
     3541 cgccgtgctg gtacgcgtac ggcgtctgca agaaaccttg ccggtcggac cagacgatgt
     3601 ggatatcgcc ggtgccgaac agctcgcgca acttgtcgcc gacccggtcg acgatggcct
     3661 ggaagctcag cttctccgcc gcaccccgct ggatgccgtg gatcaccgcg agctcgcccg
     3721 cgcgccggtc cgcctgcgcg cgggcgctgc gcgcctcggc cgtgcgctcg gccacctcgg
     3781 cttcgaggcg cgc
//
LOCUS       DASVHM010000128         4958 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_442031, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000128 DASVHM010000000
VERSION     DASVHM010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4958
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442031"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..315
                     /locus_tag="VF308_02465"
     CDS             <1..315
                     /locus_tag="VF308_02465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEX7435545.1"
                     /translation="RGGFKIYSVEVENALMAYPGVLEAAIVARPCPVLGERVHAVLHA
                     PGVAHDDESVRAHCRRLLADYKVPETLTWSDAPLPRNANGKILKRLLRGSAASIEASK
                     KS"
     gene            328..1755
                     /locus_tag="VF308_02470"
     CDS             328..1755
                     /locus_tag="VF308_02470"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019427222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX7435546.1"
                     /translation="MNETTTNPATDLADCSATLLLQLYRSKQASPVEATRAVLERIVR
                     LNPILNAFCFLAPDAALASAQASEARWLRGAPSGELDGVPVSIKDLILAKGWPTLRGS
                     RTVDPEQPWDVDAPAAARLREAGAVILGKTATPEFGCKGETNSPLTGITRNPWNPSKT
                     PGGSSGGTAVAVASGMGPLSIGTDGAGSVRIPAAFCGNFGLKPSFGRVPAHPLSPFGS
                     VAHLGPHTMSVRDAALMMNVLKKPDARDWTSLPPDPSDYTIGLEEGVRGLRIAYSPTL
                     GYASVHPEVAAAVATAVGELEALGARVERVDPGFEDPLEITTGLWFVGAYTVWSGLTP
                     AQQGLVDPDFRAEALLGERLSALDVQRLHLRRGVLGAQMRQFMQDFDLLVTPAVAVPA
                     FDARPAGHSPMDPVAMLGWTPFSYPFNLTQQPACSIPCGLTSDGLPIGLQFVGPMFGD
                     ALVLRAARAYENVKPIARPRLDGLR"
     gene            complement(1798..2913)
                     /locus_tag="VF308_02475"
     CDS             complement(1798..2913)
                     /locus_tag="VF308_02475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014724979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435547.1"
                     /translation="MIEPATPAGGAASDRSAAKLAVDDLHLSYGDNAILKGVSMQLRQ
                     GEVVSLLGPSGSGKTTLLRAVAGLEVPHRGTIRIEDRPVFDGRSKLEVAAEKRNLGLV
                     FQSYALWPHKTVFDNVAYGLRLRKVGAGEIRERVDTALKNLGLGQLGERLPHQLSGGQ
                     QQRVAIARALVYNPPVILMDEPLSNLDAKLREEARAWLRELILKMQLSALVVTHDQNE
                     AMAMSDRILLLNNGVIEQQGTPEEMYGRPETLFTADFMGSNNRIEGQVVEMKGGTVRL
                     SGDGWSLWGEAHGVAAKALKAGSPATGMVRLERVRVANGPGENHVQLPLVTSMYLGDR
                     WEHLFQLGAMRLRAYGNAPLPTGAHWLEIARDDLWVF"
     gene            complement(2906..4576)
                     /locus_tag="VF308_02480"
     CDS             complement(2906..4576)
                     /locus_tag="VF308_02480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013204997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEX7435548.1"
                     /translation="MRVSLPRAGVIGLTALAVFLPLGLIFYQSLLNAPFFTHPRTLGI
                     GAFEFIFADSDFWDSFKNSMIIAASMALIAVPLGGILAFLMVRTDLPGRQWIEPLLLI
                     PVFVSPMVLAFGYVVSAGPVGFYSVWAKQLFGGVPWNVYSLTSIAIIAGLTHVPHVYL
                     YSSSALKSLGSDVEEAARMAGSSPFQVARDVSLPMVTPSLLFSGVLVFFLGFEIFGLP
                     LVLGDPEGHLVLATYLYKLTNKLGTPSYHLMAAVAVCIVAVTFPLVMLQRFLLKNAGK
                     YITVKGKAGRQRPLPLGQWRWVAAAILVLWLFLTVVVPLSGIALRAFVSNWGEGVIIS
                     EVLTLDHFREVFSQPTLVRGILNTVLIGVIGGALAVVCYTAVGLATHRKPDGWSRFVD
                     YLVLVPRAVPGLLAGLAFLWVFLFFPPLAPLRSTIFSVWLAYTVVWLAYGMRLVSSSL
                     LQVGPELEEAARSAGATRGQVSRDVTLPLIRYGLLASWLLVFMIFERESSTGVYLLGP
                     GTEVIGSLLVSLWGTGGADMVAALSLINVVLVAIGLTVALRFGVKLHD"
     gene            complement(4594..>4958)
                     /locus_tag="VF308_02485"
     CDS             complement(4594..>4958)
                     /locus_tag="VF308_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011355369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435549.1"
                     /translation="SYAALRAKKDPSIGIVLPKDYTLVMSRVMFASKTAKNPNAAKLW
                     LDYILSRRGQAIIANQSELGSIRADVEGEMTAAGYAKTLGATAKPIPVGPELLDFLDQ
                     TKRLAFLKQWQQAIKGTK"
BASE COUNT          846 a         1698 c         1698 g          716 t
ORIGIN      
        1 cgcggcggct tcaagatcta ctcggtcgag gtcgagaatg cgctgatggc ctaccccggc
       61 gtcctcgagg cggcgatcgt cgcgcggccg tgcccggtgc tgggcgagcg cgttcacgcg
      121 gtactgcacg cgccgggcgt ggcccacgac gacgaaagcg tccgcgcgca ttgccgcagg
      181 ctcctcgccg actacaaggt gcccgagacc ctcacatggt ccgacgcgcc gctgccgcgc
      241 aatgcgaacg gcaagatcct gaagcgcctg ctgcgcgggt ccgccgcctc gatcgaggcc
      301 tcgaaaaagt cctgaggagc gacgacgatg aacgagacga cgacgaatcc cgcgaccgac
      361 ctcgccgatt gcagcgccac gctgctgctg cagctctacc gcagcaagca ggcctcgccg
      421 gtcgaagcga cccgcgcggt gctcgagcgc atcgtgcgcc tcaacccgat cctcaacgcg
      481 ttctgctttc tcgcgcccga cgcggcgctg gcctcggcgc aggcgagcga agcgcgctgg
      541 ctgcgtggcg cgccgagcgg cgaactcgac ggcgtgccgg tctcgatcaa ggacctgatc
      601 ctcgccaagg gctggccgac cttgcgcggc tcacgcaccg tcgacccgga gcagccgtgg
      661 gacgtcgacg cgccggccgc ggcgcgcctg cgcgaagcgg gcgcggtgat cctcggcaag
      721 accgcgacac cggagttcgg atgcaagggc gagaccaatt cgccgctcac cggcatcacc
      781 cgcaatccgt ggaacccttc aaaaacgcca ggcggatcct cgggcggcac ggcggtcgcg
      841 gtcgcctccg gcatggggcc actgtcgatc ggcaccgacg gcgcgggcag cgtgcgcatt
      901 ccggcggcgt tctgcggcaa cttcggcctg aagccgagct tcggccgcgt gccggcgcat
      961 cctctctcgc cgttcggcag cgtcgcccat ctcggaccgc acaccatgag cgtgcgcgat
     1021 gcggcgctga tgatgaacgt gctgaagaag cccgacgcgc gcgactggac gtcgctgccc
     1081 ccggacccga gcgactacac gatcggactc gaggagggcg tccgcggcct gcgcatcgcc
     1141 tactcgccga cgctcggcta tgccagcgtg catccggaag tcgccgcggc cgtggcgacc
     1201 gccgtcggcg agctcgaggc gctgggcgcg cgcgtcgagc gcgtcgatcc cggcttcgag
     1261 gatccgctcg agatcacgac cgggctctgg ttcgtcggcg cctacacggt gtggagcggc
     1321 ctcacgccag cacagcaggg gctggtcgac cccgactttc gcgccgaggc gctgctcggc
     1381 gaacgcctga gcgcgctcga cgtgcagcgc ctgcacctgc ggcgcggcgt gctcggtgcg
     1441 cagatgcgcc agttcatgca ggacttcgac cttctcgtca cgcccgctgt cgcggtgcct
     1501 gcgttcgacg cacggccggc cggccacagc ccgatggacc cggtcgcgat gctcggctgg
     1561 acgccgttca gctatccgtt caacctgacg cagcaaccgg cctgcagcat cccgtgcggc
     1621 ctcacgtcgg acgggctgcc gatcggactc cagttcgtcg gcccgatgtt cggcgatgcg
     1681 ctcgtcctgc gcgccgcgcg tgcctacgag aacgtcaagc cgatcgcgag gccccgcctc
     1741 gatggcctgc gctgaccggt cggggcgcgg ccgagcgcgc cgctcgacga cggtgcttca
     1801 gaacacccaa agatcgtcgc gcgcaatctc gagccagtgc gcgcccgtcg gcagcggcgc
     1861 gttgccgtag gcgcgcaggc gcatcgcgcc gagctggaac aggtgctccc agcggtcgcc
     1921 gaggtacatc gacgtgacca gcggcaactg cacgtggttc tcgcccgggc cgttcgcgac
     1981 gcggacgcgc tcgagacgga ccatgccggt ggccggagaa ccggccttca acgccttggc
     2041 ggcgacgccg tgcgcctcgc cccagagact ccagccatca ccactgaggc gcaccgtgcc
     2101 gcccttcatt tcgacgacct ggccttcgat gcggttgttg ctgcccatga agtcggcggt
     2161 gaagagcgtc tcgggccggc cgtacatctc ctcgggcgtg ccctgctgct cgatcacgcc
     2221 gttgttgagc agcaggatcc ggtccgacat cgccatcgcc tcgttctggt cgtgcgtcac
     2281 gacgagcgcc gagagctgca tcttcaggat cagctcgcgc agccaggccc gcgcttcctc
     2341 gcgcagcttc gcgtcgaggt tcgagagcgg ctcgtccatc aggatgaccg gcgggttgta
     2401 gaccagcgcg cgcgcgatcg cgacgcgctg ctgctggccg ccggaaagct gatgcggcag
     2461 gcgctcgccg agctggccca gaccgaggtt cttcaacgcg gtgtcgacgc gctcgcgaat
     2521 ctcgccggcg ccgaccttgc gcaggcgcag gccgtaggcg acgttgtcga acacggtctt
     2581 gtgcggccag agcgcatacg actggaacac gaggccgagg ttgcgctttt cggccgccac
     2641 ctcgagcttg gacctgccgt cgaagaccgg cctgtcttcg atgcggatcg tgccgcgatg
     2701 cggcacctcg aggccggcga ccgcgcgcag caaggtcgtc ttgccgctgc ccgaagggcc
     2761 gagcagcgac acgacctcgc cctgccgcaa ctgcatcgac acgcccttca ggatggcgtt
     2821 gtcgccatag gaaagatgca ggtcgtcgac cgcgagcttc gcggccgacc ggtcggaggc
     2881 ggcgccgcct gccggggtgg ccggttcaat catgaagttt cactccgaag cgcagcgcga
     2941 cggtgaggcc gatggccacc agcaccacgt tgatcagcga gagcgcggcc accatgtcgg
     3001 cgccgccggt tccccatagc gagacgagca gcgagccgat gacctcggtt cccggtccga
     3061 gcaggtagac cccggtcgag gattcgcgct cgaagatcat gaagacgagc agccagctcg
     3121 cgagcaggcc gtagcggatc agcggcaggg tcacgtcgcg gctgacctgg ccgcgcgtgg
     3181 caccggcgct gcgcgccgcc tcctcgagtt cggggccaac ctgcagcagc gagctcgaga
     3241 cgagccgcat gccgtaggcg agccagacca cggtgtaggc gagccagacg ctgaagatcg
     3301 tcgagcgcag cggcgcgagc ggcgggaaga acaggaagac ccacaggaac gccaggccgg
     3361 cgaggaggcc cggtaccgcc cggggaacga gcaccaggta atcgacgaag cgcgaccagc
     3421 cgtcgggctt gcggtgcgtc gccaggccga cggcggtgta gcagaccacc gcgagcgcgc
     3481 cgccaatcac gccgatcagc accgtgttca ggatgccgcg aaccagcgtc ggttgcgaga
     3541 acacctcgcg gaaatggtcg agcgtcagga cttcggaaat gatcacgcct tcgccccagt
     3601 tgctgacgaa ggcacgcagt gcgatgcccg agagcggcac gacgacggtg agaaagagcc
     3661 agagcacgag gatcgcggcg gcgacccagc gccattggcc gagcggcaac ggccgctgac
     3721 ggccggcctt gcctttgacg gtgatgtatt tgccggcgtt cttcagcagg aagcgttgca
     3781 gcatcacgag cgggaacgtc accgcgacga tgcacaccgc gaccgcggcc atcaggtggt
     3841 acgacggcgt gccgagcttg ttggtgagct tgtacagata ggttgcgagg acgaggtggc
     3901 cttccgggtc gccgaggacc agcggcaggc cgaagatctc gaagccgaga aagaacacca
     3961 gcacgcccga gaacagcagc gagggcgtga ccatcggcag gctcacgtcc ctggcgacct
     4021 ggaacgggct cgaacccgcc atgcgcgcag cctcctcgac gtccgaaccg agactcttca
     4081 gggccgagga cgaatacagg tagacgtgcg gcacatgggt gaggcccgcg atgatcgcga
     4141 tgctggtgag cgaatagacg ttccaaggca cgccgccgaa gagttgcttg gcccagaccg
     4201 aatagaagcc gaccggaccg gccgagacca cgtaaccgaa ggcgagcacc atcggcgaga
     4261 cgaacaccgg aatcagcagc agcggctcga tccactgccg ccccggcagg tcggtgcgca
     4321 ccatcaggaa cgcgagaatg ccgccaagcg gcaccgcgat cagcgccatc gacgcggcga
     4381 tgatcatcga gttcttgaac gaatcccaga agtcgctgtc ggcgaagatg aactcgaacg
     4441 cgccgatgcc cagcgttctc gggtgcgtga agaacggcgc gttgagcagg ctctgataga
     4501 agatcagccc gagcggcagg aacaccgcca gcgccgtcaa cccgatgacg ccggcgcgtg
     4561 gcagcgagac gcgcatttgg aacccgcgcg ttcttacttc gtacccttga tcgcctgttg
     4621 ccactgcttc aggaacgcga ggcgcttggt ctggtcgagg aagtcgagca gttccgggcc
     4681 gaccggaatc ggcttggcgg tcgcaccgag cgtcttcgcg tagccggccg ccgtcatctc
     4741 gccttcgacg tcggcgcgga tcgagccgag ttcggactgg ttggcgatga tggcctggcc
     4801 gcgcctggac aggatgtagt cgagccagag cttggccgcg ttcggattct tcgccgtctt
     4861 ggacgcgaac atcacgcgcg acatcaccag cgtgtagtcc ttcggcagca cgatgccgat
     4921 gctcgggtcc ttcttcgcgc gcagcgcggc gtaggaat
//
LOCUS       DASVHM010000129         5514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1163160, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000129 DASVHM010000000
VERSION     DASVHM010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5514
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1163160"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..769)
                     /locus_tag="VF308_02490"
     CDS             complement(<1..769)
                     /locus_tag="VF308_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019655468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HEX7435550.1"
                     /translation="MQANDLKRMKLIALGLLAVAALVYALATLLQGRHAAWGYVAAFS
                     EAAMIGAIADWFAVVALFRHPLGLPIPHTAIIPSNKDRIGKNLATFICANFLSNEQVL
                     EKLERFDAAGRLATWLAEPGHAEQVATHLGAALRYGLGVLDDERVRAFFRSTVLARLD
                     QVDVARLTGQLLDVLTADHRHQQLLDGMLQQLAHMLDDETLKAQVAEVVASEVKYLRF
                     VGLDHVAGRYATETMVAGVVHLVGEMGADAQHPLRLRF"
     gene            complement(868..1197)
                     /locus_tag="VF308_02495"
     CDS             complement(868..1197)
                     /locus_tag="VF308_02495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435551.1"
                     /translation="MFPPLTGGHAVVLQPRRACCATLAFSERPLPEIDVRETEAINLG
                     EYRAVPIAEGWGDGDWRAGVLLSGENPRGDRPAKSLYPQLFASAEAALRFARRECERQ
                     ASQINAH"
     gene            1284..1952
                     /locus_tag="VF308_02500"
     CDS             1284..1952
                     /locus_tag="VF308_02500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435552.1"
                     /translation="MLGKLNEAIFTVPLVLSSLLLRALAATQKDGARPARRKGARGAP
                     AASAQPVGVPRKRSSADVKGMRRELADVLDEHEGSREVFRYLAHFESRFAKKGLHTLE
                     EMAVKRLRRALAQFEAIVTNWSSTNLADLRSRMAVAVSLRDSGAAMWTPAQTISKAYT
                     PPAMPMVARGGVRRGPDFEGSRQVEVEDDVSISRFEAAGGEWPTSQHQALAVAEGRST
                     SPAR"
     gene            2078..2476
                     /locus_tag="VF308_02505"
     CDS             2078..2476
                     /locus_tag="VF308_02505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435553.1"
                     /translation="MLAALAPAHAAEPTPEHAAACVAALESEAEILAEQFRQGKVETE
                     PELVQRVQQGFAFIGSVYKQGLRDEEANKLLKAAEKAQEGMPPAELAARQAACRVEGA
                     HLLARANFIERAFVNGAAHRRVDKLKRARP"
     gene            2514..2861
                     /locus_tag="VF308_02510"
     CDS             2514..2861
                     /locus_tag="VF308_02510"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003277127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEX7435554.1"
                     /translation="MLAVIFEVTPREGQSQAYLQTAAALRHRLERIEGFISIERFQSL
                     AEPNRLLSLSFWRDEAAIAEWRNLEAHRQAQRAGRERIFEDYRLRIAEVVRDYGMTER
                     AQAPEDSRREHAG"
     gene            3022..3309
                     /locus_tag="VF308_02515"
     CDS             3022..3309
                     /locus_tag="VF308_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435555.1"
                     /translation="MSRSMLISALLATLSLAACDRPTVVNVPAAPVAVPASPSTTVVE
                     VPATPVAVPGPAGQTGATGGQGAPGSKGETGKSGDGTTVIVMPPAASAPTN"
     gene            complement(3364..4131)
                     /locus_tag="VF308_02520"
     CDS             complement(3364..4131)
                     /locus_tag="VF308_02520"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7435556.1"
                     /translation="MKDSKVCVVTGSSSGIGAATARLFAAKGWRVVVNFSREAAPAED
                     VAAACRALGTEALVVRCDVAQDADCRRLAARVEELWGRVDVLVNNAGTTRFVGLKDLD
                     GLSAEDFHRLYDVNVIGAYQMTRALVPLMRRHPVAGIVNMSSVASMMGLGSSIAYMAS
                     KGALNAMTVGLARALGPEVRVNAIAPGLVETPWMRDGLGAERYAATVEAYKARAALAE
                     VIAPEDVATAAWFLGVEAAKTTGEVLLLDAGLRITKG"
     gene            4210..>5514
                     /locus_tag="VF308_02525"
     CDS             4210..>5514
                     /locus_tag="VF308_02525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HEX7435557.1"
                     /translation="MTSPYPNHSPRQGLAVLTLGALGVVYGDIGTSPLYTMKVVFSPA
                     NAVALDAVNVIGVVSAIFWALMVVVTLKYVVLILRANNRGEGGIMALTALAAHAAGHT
                     PRRRTALLLIGVLGAALFYGDSVITPAISVLGAVEGLETIAPSFKPYVLPVSTAVIVG
                     LFLGQRHGTAAVGKLFGPVMILWFAVLAITGLAQVTRHPAILAALNPLRAFEFLETRG
                     WHLFFVMGSIVLALTGAEALYADMGHFGKRPIRLAWHALVLPALALNYMGQGALLLGD
                     GTALDNPFFRLFPMSWLIPAVVLATLASVIASQAVISGAYSLTKQAMQLGLLPRMKVL
                     HTSAEEAGQIYVPFVNWVVMVAVLLAMLGFESSSALASAYGIAVTVTMFITTFLTFFV
                     VRYGWGYRLPFALAATGVFLLVDGVLVASCALKVLQGGWFPLV"
BASE COUNT          842 a         1939 c         1876 g          857 t
ORIGIN      
        1 cgaaacgcag gcgcagcggg tgctgcgcgt cggcacccat ctcgccgaca aggtgcacca
       61 cgcccgcgac catcgtctcg gtggcgtagc gcccagccac atgatcgagg ccgacgaagc
      121 gcaggtattt cacctcgctc gccacgacct cggcgacctg cgccttgagg gtctcgtcgt
      181 cgagcatgtg ggcgagctgc tgcagcatgc cgtcgaggag ctgctggtgg cgatggtcgg
      241 cggtgagcac gtccagcagc tggccggtga ggcgcgccac gtcgacctgg tcgagccgcg
      301 ccagcacggt cgaacggaag aacgcgcgca cccgttcgtc gtcgagcacg cccaggccgt
      361 agcgcagcgc cgcgccgagg tgcgtcgcca cctgctcggc gtggcccggc tcggcgagcc
      421 aggtcgcgag acgcccggcc gcatcgaagc gctcgagctt ctcgaggacc tgctcgttgc
      481 tcaggaagtt ggcgcagatg aaggtcgcga ggttcttgcc gatgcggtcc ttgttgctcg
      541 ggatgatcgc ggtgtgcggg atcggcagtc cgaggggatg gcgaaacagc gccaccaccg
      601 cgaaccagtc ggcgatcgcg ccgatcatcg ccgcttccga gaacgccgcc acgtagcccc
      661 acgccgcatg tcggccctgc agaagcgtgg ccagggcata gacgagcgcg gccacggcca
      721 ggaggccgag ggcgatcagc ttcatgcgct tcaggtcgtt ggcttgcacc gggatcgggg
      781 cctcccctga cgggacgacc ccgagtatcg ccaaccgggc gccggcccgg cgatccacgg
      841 ccccgcggct cgcgggccgc ggcgcgttca atgcgcgttg atctgcgaag cctggcgctc
      901 gcactcgcgg cgcgcgaaac gcagcgccgc ttcggccgag gcaaagagct gcggataaag
      961 actcttcgcg ggccggtcgc cacgcgggtt ctcgccgctc agcagcacgc cggcgcgcca
     1021 atcgccatcg ccccaccctt cggcgatggg tacggcccgg tactcgccca gattgatggc
     1081 ttcggtctcg cgcacgtcga tctccgggag tggcctttcg ctgaacgcca gcgtcgcaca
     1141 acaggcccgc cgcggctgta ggacaacggc atgcccgcct gtgaggggcg ggaacatttg
     1201 cgaacggccg ggacggccgc cgtgtaaatc gaagtaacgc cgctggcgcc cggccacggc
     1261 gcggccgata agcggacatg ggagtgctgg ggaaactgaa cgaggcgatc ttcaccgtgc
     1321 cgctggtcct ctcctcgctg ctgctgcgcg cgctggcagc gacgcaaaag gacggcgcgc
     1381 ggcctgcgcg gcgcaagggc gcgcgcgggg cgccggccgc atcggcccaa cccgtgggcg
     1441 taccccggaa aagaagctcg gccgatgtga aggggatgcg ccgcgagctc gccgacgtgc
     1501 tcgatgagca cgaaggcagc cgcgaggtct tccgctacct cgcccatttc gaaagccgct
     1561 tcgccaagaa gggcctgcac accctcgagg agatggcggt caagcgcctg cgccgcgcct
     1621 tggcgcagtt cgaggcgatc gtcaccaact ggtcttcgac caacctcgcc gacctgcgct
     1681 cgcgcatggc ggtggcggtt tcgctgcgcg acagcggcgc cgcgatgtgg acgccggcgc
     1741 agacgatctc gaaagcctac accccgcccg cgatgccgat ggtggcgcgc ggcggcgtgc
     1801 ggcgcgggcc cgatttcgaa ggcagccggc aggtcgaggt ggaagacgac gtcagcatct
     1861 cgcgcttcga ggcggccggg ggcgaatggc cgacctcgca gcaccaggcg ctggctgtcg
     1921 ccgaaggccg gtcgacatcg ccggcgcgat gatggccctg cgggagccgg gctgacggcg
     1981 cggtgataga aagcggaacc ggcatggccg gatccgatct ccgtcattgc cgccgatgaa
     2041 acgcattcct cctcgttgcc tcttcgcagc cgcgctgatg ctcgcggctt tggcccccgc
     2101 gcatgccgcc gagccgaccc ccgagcacgc ggccgcgtgc gtggccgcgc tcgaaagcga
     2161 ggccgagatc ctggccgagc agtttcgcca gggcaaggtc gagaccgagc ccgagctggt
     2221 gcagcgcgtg cagcagggct tcgccttcat cggctccgtc tacaagcagg ggctgcgcga
     2281 cgaggaggcg aacaagctgc tcaaggcggc cgagaaggcg caggaaggga tgccgcccgc
     2341 cgagctcgcc gcgcgccagg cggcgtgccg ggtcgaaggt gcacacctgc tcgcacgtgc
     2401 caatttcatc gagcgggctt tcgtgaatgg agcggcgcac cggcgcgtcg acaagctgaa
     2461 gcgggcgagg ccctagccga agtttcgatt cgcccgattc gcagggggtg agcatgctgg
     2521 ccgtcatttt cgaagtcacg ccccgcgaag ggcagagcca agcctatctg cagacggctg
     2581 ccgcgctgcg gcaccggctc gaacggatcg aaggcttcat ctcgatcgaa cggttccaga
     2641 gcctggccga gccgaaccgg ctgctctcgc tttcgttctg gcgcgacgag gcggccatcg
     2701 ccgagtggcg caacctcgag gcgcaccgcc aggcccagcg cgcgggccgc gaacgcatct
     2761 tcgaagacta ccggctgcgc atcgccgagg tggtccggga ctacggcatg acggagcggg
     2821 cgcaggcgcc cgaagattcg cggcgcgagc acgctggctg aaggcctgat agccgacgcc
     2881 acacggcgga cctttcctac gaggctgcgc agcggcagtg cctatatttg ctgggtctct
     2941 cgggtgctgt tcgttgcgca atcggcttgc aacgagtgcc gctcggccac ttcccgcccg
     3001 accacttcca aaggatttcc catgagccgt tcaatgctga tttcggcgct gctcgcgacc
     3061 ctgagcctgg ccgcttgtga cagacccacc gtggtcaacg tcccggccgc gcccgtcgct
     3121 gtacccgcga gcccgtcgac caccgtggtc gaagtgcccg ccacgcccgt cgccgtacct
     3181 ggacctgcgg ggcagacggg cgcaaccggt ggtcagggcg ctccgggcag caagggcgag
     3241 accggcaagt ccggcgacgg caccacggtg atcgtgatgc cgcccgcggc ttcagcgcca
     3301 acgaactgaa tcggattcgg acgacacctc gcgcgaaatg cggaaggcat ccgccgaggc
     3361 gcatcagccc ttggtgatgc gcaggccggc gtcgagcagc aggacctcgc cggtggtctt
     3421 ggcggcctcg acgccgagga accaggccgc ggtcgcgacg tcctcgggcg cgatcacctc
     3481 ggccagcgcc gcgcgtgcct tgtacgcctc cacggtcgcc gcgtagcgct cggcgcccag
     3541 tccgtcgcgc atccagggcg tctcgaccag gccgggcgcg atcgcattga cgcgcacctc
     3601 gggcccgagc gcgcgcgcca agccgaccgt catcgcgttc agcgcgccct tggaggccat
     3661 gtaggcgatc gacgagccca ggcccatcat cgaggccacc gacgacatgt tgacgatgcc
     3721 ggcgaccggg tggcgccgca tcagagggac cagcgcgcgc gtcatctggt aggcgccgat
     3781 cacgttgacg tcgtagagcc gatggaaatc ctcggcggac aagccgtcga gatccttcag
     3841 gccgacgaag cgggtcgtgc cggcgttgtt caccagcacg tcgacacgtc cccagagctc
     3901 ttcgacccgg gccgcgaggc ggcggcagtc ggcgtcctgc gcgacgtcgc agcgcaccac
     3961 cagcgcctcg gtgccgagcg cccggcatgc agcggccacg tcctcggccg gcgcggcctc
     4021 gcgcgaaaaa ttgacgacca cgcgccagcc cttggcggcg aaaagccgcg cggtcgcggc
     4081 accgatgccg gaggaagaac cggtgacgac acagaccttg ctgtccttca tgcgtgcgct
     4141 ccttcaggct cgtcgcttgc ggaccgcgcc acacgcggac tggagcgata gcctataaca
     4201 gcggtctcga tgacgtcccc gtaccccaac cattcaccgc ggcaaggcct cgcggtcctc
     4261 acgctgggcg cgttgggcgt cgtctacggc gacatcggca ccagcccgct gtacacgatg
     4321 aaggtggtct tcagcccggc caatgccgtg gccctcgatg ccgtgaacgt catcggggtc
     4381 gtctcggcca tcttctgggc gctgatggtc gtggtgacgc tcaagtacgt cgtcctcatc
     4441 ctgcgcgcca acaaccgcgg cgaaggcggc atcatggccc tgaccgcgct ggccgcccat
     4501 gcggccggcc acacgcccag gcgccgcacc gcgctgctgc tcatcggcgt gctcggcgcg
     4561 gcgctgttct acggcgacag cgtcatcacg ccggcgattt cggtgctggg cgccgtcgaa
     4621 gggctggaaa cgatcgcgcc ctctttcaag ccctatgtcc tgcccgtctc gacggccgtc
     4681 atcgtcgggc tctttctcgg ccaacgccac ggcacggccg cggtgggcaa gcttttcgga
     4741 ccggtcatga ttctctggtt cgccgtgctc gccatcaccg gcctggcgca agtcacccgg
     4801 cacccggcca tcctcgcggc gctcaatccg ctgcgagcct tcgaattcct ggagacccgc
     4861 ggctggcacc tgttcttcgt catgggctcg atcgtgctcg cgctgacggg ggccgaggcg
     4921 ctctatgcgg acatggggca cttcggcaag aggccgatcc ggctggcctg gcacgccctc
     4981 gtgctgccgg cgctcgcgct caactacatg ggccagggcg ccctgctgct cggcgacggc
     5041 acggccctcg acaacccgtt cttccggctc tttccgatgt cctggctgat cccggccgtc
     5101 gtgctcgcga cgctggcctc ggtcatcgcg tcgcaggccg tgatctccgg ggcctattcg
     5161 ctgaccaagc aagccatgca actgggtctc cttccgcgca tgaaggtgct gcacacctcg
     5221 gccgaggaag ccggccagat ctacgtgcct ttcgtcaact gggtcgtcat ggtcgcggtg
     5281 ctgctggcga tgctcggctt cgaaagctcc tcggcgctcg cctccgcata cggcatcgcg
     5341 gtcacggtga ccatgttcat caccaccttc ctgaccttct tcgtcgtgcg ctacggctgg
     5401 ggctaccgac ttccgttcgc cctggcggca accggcgtct ttctgctcgt cgatggggtc
     5461 ctcgtggcct cctgcgccct gaaggtcttg cagggcggct ggtttccgct cgtc
//
LOCUS       DASVHM010000130         4316 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_948046, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000130 DASVHM010000000
VERSION     DASVHM010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4316
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_948046"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1154
                     /locus_tag="VF308_02530"
     CDS             <1..1154
                     /locus_tag="VF308_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEX7435558.1"
                     /translation="HLCVGCGACTTVCPSGALTYATPRPDEMGLRIRTLLATHAKAGG
                     THAALLIHSQGAGARAIRSLGRAARTDAGVHGLPARVLPLEVWHTASVGIDLWLAALA
                     HGASQVWVLMTDEEAPDYRTAVAAQMRVAQTLLTGLGFAGEHLRIVDAAGLAPDALAE
                     RTAGPAQAASSGAPGGRRFDPTLLRLDRALQAPTASGVKRAATFSVQADKRSTLDLAI
                     EHLMLSSANVPDAIALPAPASPFGNLIVDTAACTLCLACVGACPEAALADNPDRPQLR
                     FIEKNCVQCGLCASTCPEDAIVMEPRLLLAGAGKARKLPLVLNEAEPFCCVRCGKPFG
                     TLRAIEVMSAKLGGHAMFQGAAAERLKMCGDCRVIDIHTNPDEVKITDL"
     gene            1168..1788
                     /locus_tag="VF308_02535"
     CDS             1168..1788
                     /locus_tag="VF308_02535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015015430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0061077 - chaperone-mediated protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HEX7435559.1"
                     /translation="MHALNFSSTDDREELARAEVYGLLANLFYSAPADELYAQLRVAV
                     TEAPVRGAFLERAWGEVVAAARRLTTAEVQAEYAALFLGIGKPEVFLYGSFFLAGALN
                     GKPLVELRSDLRALGLERPETISETEDHLASLCEVMRYLIAGDDIGTSNLGAQQRFFN
                     AHLRGWVDAFCDALAAHPRADFYRAVAGFARDFFAVEAQGLDLLDA"
     gene            1983..2219
                     /locus_tag="VF308_02540"
     CDS             1983..2219
                     /locus_tag="VF308_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase"
                     /protein_id="HEX7435560.1"
                     /translation="MKIIQSQRPAPESSPARADRRGLVVGVGVAGAAAVAVHALGRGL
                     AEAPVAGAAKALPVKGDGYQLTQHVLRYYETTKA"
     gene            2255..>4316
                     /locus_tag="VF308_02545"
     CDS             2255..>4316
                     /locus_tag="VF308_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX7435561.1"
                     /translation="MLLTRKFSERGAAPTSSLVASLARGVQRAIPTMDRRAFLRRSGL
                     GVGVGLATSQLTLVRKAQAADAPAAAAKPVIRRTVCTHCSVGCAVDAVVENGVWVRQE
                     PVFDSPLNLGAHCAKGAALREHGRGEYRLKTPMKLVDGKYQRISWDQALDEISAKMLE
                     LKKQSGPDSLFVVGSSKHNNEQSYLLRKWVSLWGSNNCDHQARICHSTTVAGVANTWG
                     YGAMTNSYNDMRNSKCAMYIGSNAAEAHPVSLLHMLHAKETGTKMIVVDPRFTRTAAK
                     ADEYVRLRSGGDIPFLFGVMHHIFKNGWEDQKYIADRVYGMDKVRDEALNKWTPDKVE
                     EACGVDEATVYKVAKMMAENRPSTVVWCMGQTQHSIGNAVVRASCLLQLTLGNVGVSG
                     GGANIFRGHDNVQGATDIGPNPDSLPGYYGLSEGSWKHFAKVWGVDFEWIKKQYAPGM
                     MGKPGMTVSRWIDGVLEKNELIDQDSNLRGLVFWGHAPNSQSRGAEMKQAMDKLDLLV
                     VIDPYPSASAAMAAMPGRPGDLNTNRAVYLLPAATQFETSGSVTASNRSLQWREKVIE
                     PLFEARTDQMIMYQLAQKLGFDKELMAKTKLVPGRGGMMEPEVESILREVNQSCWSIG
                     YTGQSPERLKAHMRNMNVFDVKTLRAKGGIDKETGYKLEGEYFGLPWPCYGTPEMKHP
                     GSPNL"
BASE COUNT          722 a         1424 c         1491 g          679 t
ORIGIN      
        1 cgcatctctg cgtgggctgc ggcgcgtgca cgacggtgtg tccgagcggc gcgttgacgt
       61 atgccacgcc gcggcccgat gagatgggcc tgcgcatccg cacgctgctc gcgacccacg
      121 cgaaggccgg aggcacgcat gcggcgctgc tcatccacag ccagggggcc ggtgcccggg
      181 cgattcgcag cctcgggcgc gctgcgcgca ccgatgccgg cgtgcacggt ctgcccgcgc
      241 gcgtgctgcc gctggaggtc tggcacacag cgtcggtcgg catcgacctg tggctcgcgg
      301 cgctggccca tggcgcctcg caggtctggg tgctgatgac ggacgaagaa gcgcccgact
      361 accgcacggc agtcgccgcg cagatgcggg tcgcgcagac cctcctcacc ggcctgggct
      421 ttgccggcga gcacttgcgg atcgttgacg ccgccggcct cgcgccggat gcgctcgccg
      481 aacgcacggc gggtccggcg caggcggctt cgagcggcgc tcccggtggc cggcggttcg
      541 acccgaccct gctgcgcctc gatcgcgcgc tgcaggcacc gaccgcgtca ggcgtgaagc
      601 gcgccgcgac cttcagcgtg caggcggaca agcgcagcac gctcgacctc gcgatcgagc
      661 atctgatgct gagcagcgcg aacgttcccg atgcgatcgc gctgccggcg ccggcgagtc
      721 cgttcggcaa cctgatcgtc gataccgcag cctgcacgct gtgcctggcc tgcgtcggcg
      781 cctgtcccga ggcggcgctc gccgacaacc cggatcgccc gcaactgcgt ttcatcgaga
      841 agaactgcgt gcagtgcggg ctgtgtgcga gcacctgtcc cgaggatgca atcgtcatgg
      901 agccacgcct cctccttgcc ggcgcgggca aggcgcgcaa gctcccgctc gtgctcaacg
      961 aagccgagcc gttctgctgc gtgcgttgcg gcaagccgtt cggcacattg agggcgatcg
     1021 aagtgatgag cgccaagctc ggcggtcacg cgatgttcca gggcgcggcg gccgagcgtt
     1081 tgaagatgtg cggggattgc cgtgtgatcg acatccacac gaaccctgac gaagtgaaga
     1141 tcacggacct ttgagaccgc aacctcgatg cacgctctca acttcagcag caccgacgac
     1201 cgcgaggagc tcgcccgcgc cgaggtctac ggccttctgg ccaatctctt ctattcggca
     1261 ccggccgacg agctttacgc gcagctgcgc gttgccgtga ccgaggcacc ggtccgggga
     1321 gcctttctgg agcgggcctg gggcgaggtc gtcgcggcag cgcgccggct cacgacggcc
     1381 gaggtgcagg ctgaatacgc ggcgctcttt ctgggtatcg gcaagccgga ggtgtttctc
     1441 tacgggtctt tcttcctggc gggcgctctc aacggcaagc cgctggtcga gctcaggagc
     1501 gatctgcgcg cgctcggcct cgagcgtccc gagacgatca gcgaaaccga ggaccatctc
     1561 gcgagcctgt gcgaagtaat gcgctacctg atcgccggcg acgacatcgg gaccagcaac
     1621 ctgggcgcgc agcagcgctt cttcaacgcc catctgcgcg gctgggtcga tgcgttctgc
     1681 gatgcgctgg cggcccatcc gcgcgccgat ttctatcgcg cggtggccgg attcgcgcgc
     1741 gatttctttg ccgtcgaggc gcaagggctc gatctgctcg atgcctaggg ccgctgtgcg
     1801 gcgcttcagg aatctgtcac gaagttgacg gccgcactgc gggtttcggt gtcgggctag
     1861 ccgaaaaccc gattgacgcc cggaaacgtg ctgctagatt cgcggggacg ggcagcgcgg
     1921 tcggcgtgcg aacgcaggat ccaggtctcc gatcgttggg ccgtcgaaca ggagtcagag
     1981 cgatgaagat cattcaatcc cagcggcctg cgcccgagtc ttctccagcc agggcggatc
     2041 gacgcggcct ggtcgtgggc gtcggcgtcg caggcgccgc cgcggtcgcc gtgcacgccc
     2101 tgggccgggg tctggccgag gcgcccgtcg ccggcgcggc gaaggcgctg ccggtcaagg
     2161 gcgacggcta tcagctcacg cagcacgtgc tgcgctacta cgaaaccacg aaggcctgat
     2221 ggcgcgctcg aaccggttga cgggagaggg aatcatgttg ctcacgcgta agttttccga
     2281 gcggggcgcg gccccgactt cgtcgctggt ggccagcctc gcgcgcggcg tgcagcgcgc
     2341 catcccgacc atggaccggc gcgcgttcct gcgccgttcg gggctcggcg tcggagtcgg
     2401 tctggcgacg tcgcagttga ctctcgtgcg caaggcccag gccgccgatg cgccggccgc
     2461 tgcggcaaag ccggtgatcc ggcgcaccgt gtgcacgcat tgctcggtcg gctgcgcggt
     2521 cgatgcggtg gtcgagaacg gcgtctgggt acgccaggag ccggtgttcg attcgcccct
     2581 caacctcggc gcgcactgcg ccaagggcgc cgcgctgcgc gagcacggcc gcggcgaata
     2641 ccgcctcaag acgcctatga agctggtcga cggcaagtac cagcgcatca gctgggacca
     2701 ggccctcgac gagatcagcg ccaagatgct cgagctgaag aagcagagcg ggcccgattc
     2761 gctgttcgtc gtcggttcgt cgaagcacaa caacgagcag tcctacctgc tgcgcaagtg
     2821 ggtgagcctg tggggctcca acaactgcga ccaccaggca cgcatctgcc actccaccac
     2881 ggtcgcgggc gtcgcgaaca cctggggcta cggcgcgatg acgaattcgt acaacgacat
     2941 gcgcaattcg aagtgcgcga tgtacatcgg ctcgaacgcg gccgaggcgc atccggtgtc
     3001 gctgctgcac atgctgcacg cgaaggaaac cggcacgaag atgatcgtcg tcgatccgcg
     3061 cttcacccgc accgcggcca aggccgacga gtacgtgcgc ctgcgttcgg gcggagacat
     3121 tccgttcctg ttcggcgtga tgcaccacat cttcaagaac ggctgggaag accagaagta
     3181 catcgccgac cgcgtttacg gcatggacaa ggtccgcgac gaggcgctca acaagtggac
     3241 gccggacaag gttgaggagg cctgcggcgt cgacgaggcg acggtctaca aggtcgcgaa
     3301 gatgatggcc gagaaccggc cgagcacggt cgtctggtgc atgggccaga cccagcactc
     3361 gatcggcaac gcggtcgtgc gcgcctcgtg cctgttgcag ctcacgctcg gcaacgtcgg
     3421 cgtgagcggc ggcggcgcca acatcttccg cggtcacgac aacgtgcagg gcgcgaccga
     3481 catcggcccg aacccggatt cgctgcccgg ctactacggc ctgtccgaag gctcgtggaa
     3541 gcacttcgcg aaagtctggg gcgtcgactt cgagtggatc aagaagcagt acgcgccggg
     3601 catgatgggc aagcccggga tgacggtgtc gcgctggatc gacggtgtgc tcgagaagaa
     3661 cgagctgatc gaccaggaca gcaacctgcg cggactcgtg ttctggggcc atgcgcccaa
     3721 ctcgcaaagc cgcggcgccg agatgaagca ggcgatggac aagctcgacc tcctcgtcgt
     3781 catcgatcct tatccttcgg cgtcggcggc gatggcggcg atgcccggca ggcccggaga
     3841 cctgaacacc aaccgcgcgg tctacctgct gccggctgcg acgcagttcg agacctccgg
     3901 gtcggtcacc gcgtcgaacc gttcgctcca gtggcgcgag aaggtgatcg agccgctgtt
     3961 cgaggcgcgc accgaccaga tgatcatgta ccagctggcg caaaagctcg gcttcgacaa
     4021 ggagttgatg gccaagacca agctcgtccc cggccggggc gggatgatgg agcccgaggt
     4081 cgagtcgatc ctgcgcgaag tcaaccagag ttgctggtcg atcggctaca ccggccagtc
     4141 gccggagcgc ctgaaggcgc acatgcgcaa catgaatgtc ttcgacgtga agacgttgcg
     4201 cgccaagggc ggcatcgaca aggaaaccgg ctacaagctc gagggcgagt acttcggcct
     4261 gccctggccc tgctacggca cgccggagat gaagcaccca ggctcgccca atctgt
//
LOCUS       DASVHM010000131         1816 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1091454, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000131 DASVHM010000000
VERSION     DASVHM010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1091454"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..486
                     /locus_tag="VF308_02550"
     CDS             <1..486
                     /locus_tag="VF308_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004627186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HEX7435562.1"
                     /translation="VSFSWDAQQLVNGLPGTEFESFGGNRGMHGSFSPIDVHNTLLAS
                     GPAFRTGTTIGNPTGNVDVAPTVAYLFGLSMPQADGRVLNEALVKPASTNAASFKASV
                     VNPASAATGLVFKSPVDPTGATVDAALSSGNYSINLVVKDLTVDGRTFRYFDYAQAVR
                     N"
     gene            538..1182
                     /locus_tag="VF308_02555"
     CDS             538..1182
                     /locus_tag="VF308_02555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435563.1"
                     /translation="MSVASTALSTALASMAAHAAVRLEFDKAFTDRNEPRQAHYRATY
                     SLNGAEHRIEVWRDRSVGLRRRTDDAIETHVFKPTGEVEWKMVVLDLKRKIRTDVDRT
                     NLYRIGQFTDWFSLAHALTRPIGPYELSALREPVTNAAPIAPCRWYLLTQAERSSKVC
                     WSAAWHVPLVITDRNDKVQWRITEIDSGRLPADTFQVDDRGFVRNNANEDIKTD"
     gene            1266..>1816
                     /locus_tag="VF308_02560"
     CDS             1266..>1816
                     /locus_tag="VF308_02560"
                     /inference="COORDINATES: protein motif:HMM:NF014038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEX7435564.1"
                     /translation="MSEIELKFCVDAGRAAAVDAALRRVPGSKRAALVSHYFDTDDRR
                     LAAAGLALRLRKTGRVWEQTLKAPGESAVERHEDTVPRPGRWGAEGPALDPALHANTP
                     AGALLDKTLSRGDSAHGALRRVYSSVFTRRSVEVEAAGARVEVAFDRGELRAGANRAT
                     ILEVEIELKSGDARALAAFGRAGV"
BASE COUNT          326 a          609 c          613 g          268 t
ORIGIN      
        1 gtgagcttca gctgggatgc gcagcagctc gtcaacggct tgcccggcac cgagttcgag
       61 agcttcggcg gcaatcgcgg catgcacggc agcttcagcc cgatcgacgt gcacaacacg
      121 ctgctggcca gcggcccggc cttccgtaca ggcacgacca tcggcaatcc gaccggcaac
      181 gtcgatgtgg cgccgacggt ggcctatctc ttcggcctgt cgatgccgca ggccgatggc
      241 cgcgtcctca atgaagcgtt ggtgaagccg gccagcacca atgcggcgtc cttcaaggcg
      301 agcgtcgtca atcccgcgtc ggccgccacc ggcctcgtct tcaagtcccc ggtcgatccg
      361 accggggcga cggtggatgc ggcgctgagc tcaggcaact attcgatcaa cctcgtcgtg
      421 aaggacttga cggtcgacgg caggacattc cgctatttcg actatgcgca agcggtgcgg
      481 aactgaatcg acggtcgcgg cagcagcgga atgaaagaat gcaagcgcag gagcggcgtg
      541 tctgtcgcga gcacggccct gtcgacggcg cttgcgtcga tggcggcgca cgcagcggtc
      601 cggctcgagt tcgacaaggc gttcaccgac aggaacgaac ccaggcaggc gcactaccgc
      661 gcgacttaca gcctcaacgg cgcggagcat cgcatcgagg tgtggcgcga ccggagcgtg
      721 ggcctcaggc gacgaaccga cgacgcgatc gagacccatg tcttcaagcc aaccggcgag
      781 gtcgaatgga agatggtggt cctcgacctg aagcgcaaga ttcggaccga cgtcgatcgc
      841 accaatctct accggatcgg tcagttcacc gactggttca gcctggcgca tgcgctgacg
      901 cggccgatcg ggccgtacga actcagcgca ctgcgcgaac cggtcacgaa cgccgcgccc
      961 atcgccccgt gccgctggta ccttctgacc caggccgagc gatcgagcaa ggtctgctgg
     1021 agcgcggcgt ggcatgtgcc gctcgtgatc accgaccgca acgacaaggt tcagtggaga
     1081 atcaccgaga tcgattccgg ccggctgcct gccgacacat tccaggtcga tgaccgcggc
     1141 ttcgtccgca acaacgccaa tgaggacatc aagaccgact gaggcgaccc gagaagcttc
     1201 atcgcaaagc acctcttgca ggctgcaaga ctgacagcgc gcccgagttg gggcaagatg
     1261 gcccggtgag cgagatcgaa ctcaaattct gcgtcgacgc agggcgcgcc gctgcggtcg
     1321 atgcggcgct gcgccgagtg ccgggttcga aacgggccgc gctggtgtcg cactacttcg
     1381 acaccgacga ccggcgcctg gccgcggcag gcctcgcgtt gcgcctgcgc aagaccggcc
     1441 gcgtctggga gcagaccctc aaggcccccg gcgagagtgc cgtcgagcgg catgaggaca
     1501 cggtgccgcg tcccggacgg tggggcgccg aaggtccggc tctcgatccc gcgctccatg
     1561 cgaacacgcc cgccggcgcg ttgctggaca agaccctttc gcgcggcgat tcggcgcacg
     1621 gcgcgctgcg ccgcgtctac tccagcgtct tcacacggcg cagcgtcgag gtggaagccg
     1681 ccggagcccg ggtcgaagtc gccttcgacc ggggcgagct ccgcgccggc gcgaaccgcg
     1741 cgactatcct cgaggtcgag atcgaactga agtccggcga cgcgcgcgcg ctggcggcgt
     1801 tcgggcgcgc cggggt
//
LOCUS       DASVHM010000132         3485 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_442334, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000132 DASVHM010000000
VERSION     DASVHM010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3485
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442334"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..133)
                     /locus_tag="VF308_02565"
     CDS             complement(<1..133)
                     /locus_tag="VF308_02565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEX7435565.1"
                     /translation="MDRDDIAGWIRLLETPGVGRESARKLLAAFGSPQAIFAASTAAR
                     "
     gene            complement(159..1343)
                     /locus_tag="VF308_02570"
     CDS             complement(159..1343)
                     /locus_tag="VF308_02570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysM domain-containing protein"
                     /protein_id="HEX7435566.1"
                     /translation="MIRRIRIASHVRRAATVVSIATLLGATLSAATSVAATYPITAEQ
                     RNIAQRTAQAGVALSELLPTAPDSYTVKPRDTLWGISGLYLKSPWRWPELWGMNLEQI
                     RNPHLIYPGQLLFLDKSNGRARLRLGQAIGSESAGVMRLSPRIRSSVPGADGISSIPF
                     HLIEPFLNEAVIFETNELVNAPRIVATQEGSVLLSRGDTAYVRGELGNEREYRVFREP
                     RPLKDPTTAEILGYEAVYVGAAEYLSQGETRTGADGKTEIVPATFVLTSIRQEAGIGD
                     RLKPVPAREFTNYAPHAPQAPLAGQIVSIYGDSLTAGQNQIVALNKGARDGVERGHVL
                     ALWRDGVRTLDRTDPTKALLKLPDERVGMLFVFRVFDRMSYALILTVREPVKPGDRFT
                     QP"
     gene            1591..2103
                     /gene="def"
                     /locus_tag="VF308_02575"
     CDS             1591..2103
                     /gene="def"
                     /locus_tag="VF308_02575"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEX7435567.1"
                     /translation="MAKLKILRYPDPRLHTVARPVDEVDARTRQLVDDMLESMYAAEG
                     VGLAATQVDVHERVIVIDTSDERDDPRVLINPELLTRSEEMVFGDEGCLSVPEIYDKV
                     QRHARVAVRALNREGKTCEFEAEGLLSVCIQHEMDHLVGKMFVEYLSPLKRNRIKTKM
                     LKKSRDEARD"
     gene            2137..3132
                     /gene="fmt"
                     /locus_tag="VF308_02580"
     CDS             2137..3132
                     /gene="fmt"
                     /locus_tag="VF308_02580"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015914611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEX7435568.1"
                     /translation="MKIAFAGTPEFARVALAELHASGFEIALVLTQPDRPAGRGLKLQ
                     ASPVKAFALEHGIAVAQPRSLRTDGRFPDDACAARDALRAAQPEVLIVAAYGLILPAW
                     VLGLPPRGCINIHASLLPRWRGAAPIHRAIEAGDAQTGVTIMQMDEGLDTGAMVLAEP
                     VAIDADDTTASLQARLAALGGRLVARALGAIASGEAVLRAQPQAGVTYAHKVGKGEAV
                     IDWRLPAAVIERRLRAFDPFPGASSTLEGETIKCWRGRVSQGTGTPGEVLAAGADGIR
                     VACGAGAIDLLQLQRPGGRRVGALEFLRRTPVAPGMRFDAAPGSNGRAAAQVGGA"
     gene            3165..3470
                     /locus_tag="VF308_02585"
     CDS             3165..3470
                     /locus_tag="VF308_02585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435569.1"
                     /translation="MRRPAFVLALFATLLLAGCDMLGIESSEKTAAAREADGKAIGGA
                     CRHAGRAIEDCYAIYRKSDRAAIFAGWRDMNDYMRENKIEPVQPQLAAEVKGGTESR"
BASE COUNT          551 a         1160 c         1229 g          545 t
ORIGIN      
        1 ggcgcgccgc agtcgaggcc gcgaagatgg cctgcggcga accaaaggcg gcgagaagct
       61 tgcgggccga ttcgcggccg acgcccgggg tctcgaggag ccggatccag ccggcgatgt
      121 cgtcgcggtc gatcacgccg cgctcgactg gagagcctct acggttgcgt gaaccggtca
      181 cccggcttga ccggttccct caccgtcagg atcagcgcgt aggacattcg atcgaagacg
      241 cggaacacga agagcatgcc gacgcgctcg tcgggcagct tcaagagtgc cttggtcgga
      301 tcggtccggt caagggtgcg cacgccgtca cgccagaggg ccagcacgtg gccgcgctcg
      361 acgccgtcgc gcgcgccttt gttcagcgcg acgatctggt tctgtcctgc ggtgagggag
      421 tcgccgtaga tggacacgat ctggcccgcg agcggcgcct gcggcgcgtg gggcgcgtag
      481 ttcgtgaatt cgcgcgccgg caccggtttg agtcgatcgc cgatgccggc ttcctggcgg
      541 atgctggtca ggacgaacgt ggccgggacg atctccgttt tgccatccgc cccggtacgg
      601 gtctcgccct ggctcaggta ttccgccgcg ccgacgtaga cggcttcata gcccagtatt
      661 tccgcggtgg tcgggtcctt cagcggacgc ggctcgcgga agacccggta ttcgcgctcg
      721 ttgccgagct cgccgcgcac gtaggccgtg tcaccgcgcg acagcagcac gctgccctcc
      781 tgggtcgcaa cgatccgcgg ggcgttgacg agctcgttcg tctcgaagat cacggcttca
      841 ttgaggaacg gctcgatcag gtggaaagga atcgaggaaa tgccgtccgc acccggaacg
      901 ctggaacgaa tccgcggcga cagccgcatg acgccggcgc tttcgctacc gatcgcttga
      961 cccaggcgca ggcgcgcacg cccgttcgac ttgtcgagaa agagcagctg ccccggatag
     1021 atgaggtgcg gattgcggat ctgctccagg ttcatgcccc agagttccgg ccaacgccaa
     1081 ggactcttca ggtacagccc cgaaatgccc cagagcgtgt cgcgcggttt gacggtatag
     1141 gagtcgggcg cggtcggcag cagttcggac aaggccacgc cggcctgcgc cgtgcgctgt
     1201 gcgatgttgc gctgctcggc ggtgatcggg taggtggcgg cgacgctcgt cgcagcgctc
     1261 agcgtggcgc cgagcaatgt ggcgatcgac accacggttg cggcccggcg aacgtgtgag
     1321 gcaatgcgga tgcgtcggat catgtgggaa tatctcgatg tggcgtcaag cggtcgtcca
     1381 gcgccgtggg gttgctccgc cgcgccgcgc ccacgggccg ccgttcggcg aaaatcctca
     1441 ttctctttca cagattttgc ctctaaagca ttgataccgc aacgaaagtg agccgttgcc
     1501 ggcactgcgt gtgagacctg tcacggcgct tcgcgttgcg gcgttcccac agttgcgcgg
     1561 cgttcgccgc gcggaatcga ttcgatacaa atggccaagc tcaagatcct tcgctatccc
     1621 gacccgcgcc tgcacaccgt cgccaggccg gtcgacgaag tcgacgcgcg cacgcgtcag
     1681 ctcgtcgacg acatgctcga gagcatgtac gcggccgagg gcgtcggctt ggccgcgacc
     1741 caggtcgacg tgcacgagcg cgtgattgtc atcgacacat ccgacgagcg cgacgatccg
     1801 cgcgtgctga tcaaccccga actcctgacg cgcagcgagg agatggtctt cggcgacgag
     1861 ggttgcctgt cggtgcccga gatctacgac aaggtccagc gccacgcccg agtcgcggtg
     1921 cgcgccctga atcgcgaggg gaagacctgc gagttcgagg ccgagggcct gctctcggtg
     1981 tgcatccagc acgagatgga ccatctggtg ggcaagatgt tcgtcgagta cctgagccct
     2041 ttgaagcgca atcgcatcaa gacgaagatg ctgaagaaga gccgggatga agcccgcgac
     2101 tgagccgcgt gtcgcggcgc ggtccgaaag gggcgcatga agatcgcctt cgccggcacg
     2161 cccgagttcg cccgggtcgc gctggccgag ctgcatgcga gcggcttcga gatcgccctg
     2221 gtgctcaccc agccggaccg tcccgccggc cgtggcctga agctacaggc gtcgccggtc
     2281 aaggcgttcg cgctggagca tggcatcgcg gtcgcgcagc cgcgcagcct tcgaaccgac
     2341 ggcaggtttc ccgatgacgc ctgcgcggcg cgcgacgcgc tccgtgccgc gcagccggag
     2401 gtgctgatcg tggccgccta tggactgatc ctgccggcat gggtgctggg cttgccgccg
     2461 cgcggctgca tcaacatcca cgcgtcgctc ttgccgcgct ggcgcggcgc ggcgccgatc
     2521 catcgggcga tcgaggcggg cgacgcgcag accggggtca cgatcatgca gatggacgag
     2581 ggcctggaca ctggcgccat ggtgctcgcc gaaccggtcg cgatcgacgc ggacgacacc
     2641 accgcgagcc tgcaggcgcg cctcgcggcg ctcggcggca ggctcgtcgc ccgcgcgctc
     2701 ggcgcgatcg ccagcggcga agcggtgctg cgtgcgcagc cgcaggctgg cgtgacctat
     2761 gcgcacaagg tcggcaaggg cgaggcggtg atcgactggc gcctgccggc cgccgtgatc
     2821 gagcggcgcc tgcgtgcgtt cgatccgttt cccggcgcca gcagcacgct cgagggtgag
     2881 acgatcaaat gctggcgcgg ccgggtgagc cagggcacgg gcacccccgg cgaagtgctc
     2941 gccgccgggg ccgacgggat ccgggtcgcc tgcggcgccg gcgccatcga tctgctgcaa
     3001 ctgcagcgcc ccggcgggcg tcgcgtgggc gcgctcgaat tcctgcggcg caccccggtc
     3061 gcgccgggca tgcggttcga cgcggcaccg ggttcaaacg ggcgcgccgc cgctcaagtc
     3121 ggcggcgcct gagccgatat cgacggcagc attccacgct caccatgcgc cgtcccgcct
     3181 ttgttctcgc cctcttcgcc accctgctgc tcgccggttg cgacatgctc ggcatcgaat
     3241 cgtccgaaaa gaccgccgcc gcgcgcgaag ccgacggcaa ggccatcggc ggcgcctgtc
     3301 gtcacgcggg gcgagccatc gaggactgct acgcgatcta caggaagtcc gaccgggccg
     3361 cgatctttgc cggctggcgc gacatgaacg actacatgcg cgagaacaag atcgagccgg
     3421 tgcagccgca gctcgcggcc gaggtcaagg gcggcaccga gtcgcgctga ggcgcgcgag
     3481 gaagc
//
LOCUS       DASVHM010000133         2117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_658783, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000133 DASVHM010000000
VERSION     DASVHM010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658783"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1222)
                     /gene="der"
                     /locus_tag="VF308_02590"
     CDS             complement(<1..1222)
                     /gene="der"
                     /locus_tag="VF308_02590"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEX7435570.1"
                     /translation="MKPVLAIVGRPNVGKSTLFNRMTKSRDAIVADFAGLTRDRHYGD
                     GRLGEREFIVVDTGGFEPDSTSGIVKEMAKQTRQAVAEADAVIFVVDLRAGVSGQDHD
                     IARFLRTAGRRVVLAANKAEGMSASPLLGEFFELGLGEPHPVSAAHGEGVRSLLDAAL
                     ADFPLHPEPAEEDARPDAPIRLAVAGRPNVGKSTLINTWLGEERLVAFDQPGTTRDAI
                     SVPFEHGGQKFELIDTAGLRRRGKVFEAVEKFSVVKTLQAIAEANVVLLLLDATQGVT
                     DQDAHIAGYILESGRAVAIAVNKWDAVDAYQKETLQRSIEQRLAFLRFAPVLNISATK
                     RQGLGPVWKAIIDAHASATRKLATPVLTRVLLEAVEHQAPKRAGAFRPKLRYAHQGGS
                     NPPIIVVHGNSLEHV"
     gene            complement(1266..>2117)
                     /locus_tag="VF308_02595"
     CDS             complement(1266..>2117)
                     /locus_tag="VF308_02595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX7435571.1"
                     /translation="GAVLGAGVGSDGRFASVVTRAGELVTLEAGQVKWRKPIGTRVAT
                     APLVAGERVFVIGVDRTVQAFDALDGRKLWALQRPGDPLTLAQSGVLSAFRNTLIVGQ
                     GPRMAGVDPAAGTVRWEVPIGAPRGANEVERLADLIGPAVRVGKLLCARSFQAAVGCV
                     DADRGTLAWTKNIGGTDAVGGDRDYLFGADASDRMTAWRTDSGAVAWTSEALLYRGLS
                     APAVHGASLVYGDSEGTVHWLSRDKGEAQLRLPTDGSAVVGQPVVAGSTLLVVTRAGG
                     LFAFRSL"
BASE COUNT          324 a          736 c          751 g          306 t
ORIGIN      
        1 tcacgtgttc gagcgaattg ccgtgcacca cgatgatcgg cgggttggaa ccaccctggt
       61 gcgcatagcg cagcttgggt cgaaaggcgc cggcgcgttt cggggcctgg tgctccaccg
      121 cctcgagcag gacgcgcgtc aacaccggcg tggcgagttt tctcgtcgcc gaggcgtgcg
      181 catcgatgat cgccttccag accggcccga gcccctggcg tttcgtggcg gagatgttga
      241 gcaccggcgc gaagcgcaga aacgcgaggc gctgctcgat cgaacgctgc agcgtctcct
      301 tctggtaggc atcgaccgcg tcccacttgt tgaccgcgat cgcgacggcg cgcccgctct
      361 ccaggatgta gccggcgatg tgcgcgtcct ggtcggtcac gccctgggtc gcgtcgagaa
      421 ggaggagcac gacgttggcc tcggcgatcg cctggagcgt cttgacgacg gagaatttct
      481 cgaccgcctc gaacaccttg ccgcgccggc gcagcccagc ggtgtcgatc agctcgaact
      541 tctgcccgcc gtgctcgaac ggcacgctga tcgcatcgcg ggtcgtgccg ggctggtcga
      601 aggcgaccag gcgctcctcg ccgagccagg tgttgatcag ggtcgacttg ccgacgttgg
      661 gacgaccggc caccgcgagg cggatcggtg cgtcggggcg cgcgtcttcc tccgcaggct
      721 ccggatggag ggggaaatcg gcgagcgccg catcgagcag gctgcgcacg ccttcgccgt
      781 gggcggccga gaccgggtgc ggttcgccca ggccgagctc gaaaaactcg ccgagcagcg
      841 gcgaggccga catgccctcg gccttgttgg cggccagcac gacccggcgc ccggccgtgc
      901 gcaggaagcg cgcgatgtcg tggtcctgcc ccgagacccc ggcgcgcagg tcgacgacaa
      961 agatcaccgc gtcggcttcg gcgacggcct ggcgcgtctg cttggccatt tccttgacga
     1021 tgccgctggt gctgtcgggc tcgaagccgc cggtgtcgac gacgatgaac tcgcgctcgc
     1081 cgagacggcc gtcgccatag tgacggtcgc gcgtcaggcc ggcgaagtcg gcgacgatcg
     1141 cgtcgcgact cttcgtcatc cggttgaaga gcgtcgactt gcccacgttg gggcggccga
     1201 cgattgccag cacgggtttc atgagacgcg actcaggacg aatggacggc cgtggcggga
     1261 ccggttcaga gcgagcggaa cgcgaacagc ccgcccgcgc gcgtgacgac gagcagcgtc
     1321 gaacccgcga ccacgggctg gcccacgaca gcactgccgt cggtcggcag gcgcagctgc
     1381 gcctcgccct tgtcgcgaga aagccagtgc acggtgccct cggagtcgcc gtagaccaag
     1441 gatgcgccgt gcacggcggg cgcgctcaag ccgcgataga gcagcgcctc agaggtccac
     1501 gcgaccgctc cgctgtcggt gcgccacgcg gtcatgcggt cggaggcgtc ggctccgaag
     1561 aggtagtcgc ggtcgccgcc gacggcgtcg gtgccgccga tgttcttcgt ccacgccagc
     1621 gtcccacggt cggcatcgac acagccgacc gcggcctgga acgaccgcgc acaaagcaac
     1681 ttgccgaccc gcacggccgg gccgatgagg tcggcgaggc gctcgacttc gttggcgccg
     1741 cgcggcgcgc cgatcggcac ttcccagcgc accgtgccgg cggccgggtc gacaccggcc
     1801 atgcgcggcc cctggccgac gatcagcgtg ttccggaacg ccgaaagcac gcccgactgg
     1861 gcaagcgtca acggatctcc cggacgctgc aaggcccaga gcttgcgccc atcgagcgcg
     1921 tcgaaggcct gcacggtgcg atcgacaccg atgacgaaga cgcgttcgcc ggccaccagc
     1981 ggggcggtcg cgacccgcgt gccgatcggt ttgcgccatt tgacctgacc ggcctcgagc
     2041 gtgacgagtt cgccggcgcg cgtgacgacg gacgcaaagc gcccgtcgct gccgacgcct
     2101 gcgccgagca ccgcacc
//
LOCUS       DASVHM010000134         2099 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_586997, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000134 DASVHM010000000
VERSION     DASVHM010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_586997"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1134
                     /locus_tag="VF308_02600"
     CDS             <1..1134
                     /locus_tag="VF308_02600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003067865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsK/SpoIIIE domain-containing protein"
                     /protein_id="HEX7435572.1"
                     /translation="EVYNDAASQLTLGLGKDIVGNPVVADLAKMPHCLVAGTTGAGKS
                     VGINAMILSLLYKAEARDVRLILIDPKMLEMSVYEGIPHLLCPVVTDMKQAANALNWG
                     VGEMERRYRLMSKLGVRNLSGYNKKIAEAAERGESLPNPFSLTPEQPEPLERLPFVVI
                     VIDELADLMMVVGKKIEELIARLAQKARASGIHLILATQRPSVDVITGLIKANIPTRL
                     SFQVSSKIDSRTILDQMGAEALLGMGDMLYMPSGSGFPTRVHGAFVSDEEVHRVVSYL
                     RSQGEPNYIEGILEGGTLEGEGGDLLGGEGGAGDAESDPMYDQAVGIVLQHRRASISL
                     VQRHLRIGYNRAARLLEQMEKSGLVSSMSTNGNRDLLVPARAE"
     gene            1161..1769
                     /gene="lolA"
                     /locus_tag="VF308_02605"
     CDS             1161..1769
                     /gene="lolA"
                     /locus_tag="VF308_02605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015013090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008320 - protein transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HEX7435573.1"
                     /translation="MRRLAIGLCVAAAAFAAHADAVDTLKDFVRDVKTGRSAFTQVVS
                     SPDGAKKKASSGSFEFVRPNRFRFAYTRPFEQLIVSDGQKVWIYDADLNQASSRKLSN
                     ALGATPAALLAGGSLEKDFDLAALPAKDGLEWAKATPKIKDGPFQAVNIGFRGKDLAA
                     VEIVDSFGQHSLLQFAQFAANVPLAAESFRFTLPAGADLIEQ"
     gene            complement(1800..>2099)
                     /locus_tag="VF308_02610"
     CDS             complement(1800..>2099)
                     /locus_tag="VF308_02610"
                     /inference="COORDINATES: protein motif:HMM:NF016830.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HEX7435574.1"
                     /translation="AAFDAGVLVDRPWGDAGPSALTAGIALARIGAEQRRLQAARAEP
                     VATHETTVEVAARWKPTPALALQPLVQQVWRVAGRAGTRATIVGVRIEWALSSER"
BASE COUNT          346 a          741 c          708 g          304 t
ORIGIN      
        1 gaggtctaca acgacgcggc ctcgcagctc accctgggtc tgggcaagga catcgtcggc
       61 aacccggtcg tcgccgacct cgcgaagatg ccgcactgcc tggtcgccgg gaccaccggc
      121 gccggcaagt cagtcggcat caacgcgatg atcctgagcc tgctgtacaa ggccgaggcg
      181 cgcgacgtgc gcctgatcct gatcgatccg aagatgctcg agatgagcgt ctacgaaggc
      241 attccgcact tgctctgccc ggtcgtcacc gacatgaagc aggccgccaa tgcgctcaac
      301 tggggcgtcg gcgaaatgga gcggcgctac aggctgatga gcaagctcgg cgtgcgcaac
      361 ctctcgggct acaacaaaaa gatcgccgag gccgccgagc gcggcgagtc gctccccaat
      421 ccgttcagcc tcacccccga gcagcccgag ccgctcgagc gcctgccctt cgtcgtgatc
      481 gtgatcgacg aactcgccga cctgatgatg gtcgttggca agaagatcga ggagctgatc
      541 gcgcggctcg cccagaaggc gcgcgcctcg ggcatccacc tgatcctggc gacgcagcgg
      601 ccgagcgtcg acgtgatcac gggcctcatc aaggccaaca tcccgacgcg cctcagcttt
      661 caggtcagca gcaagatcga cagccggacc atcctcgacc agatgggcgc cgaggccctg
      721 ctcggcatgg gcgacatgct ctacatgccg tcgggcagcg gctttccgac gcgcgtgcac
      781 ggcgccttcg tcagcgacga ggaagtgcac cgcgtcgtca gctatctgag gagccagggc
      841 gagccgaact acatcgaggg catcctcgag ggcggcacgc tcgagggcga aggcggcgac
      901 ctgctcggcg gcgaaggggg cgccggcgac gccgagtccg acccgatgta cgaccaggcg
      961 gtcggcatcg tgctgcagca ccggcgcgcc tcgatctcgc tggtgcagag gcacctgcgc
     1021 atcggctaca accgcgccgc gcgcctgctg gaacaaatgg agaaatccgg actcgtatcg
     1081 agcatgtcca cgaacggcaa ccgcgacctc ctcgtgccgg cgcgcgccga atgaagcgcg
     1141 acatccgggg cgctcgggcg ttgaggcgtc tcgccatcgg cctttgcgtc gccgcggcgg
     1201 cgttcgcggc gcacgccgat gcggtcgaca cgctgaagga tttcgtgcgc gacgtgaaga
     1261 ccgggcgctc ggccttcacc caggtcgtgt cgtcgcccga cggggcgaag aagaaggcgt
     1321 cgagcggcag cttcgagttc gtgcgcccga accgctttcg cttcgcctac accaggccct
     1381 tcgagcaact gatcgtgtcc gacggccaga aggtctggat ctacgacgcc gatctgaacc
     1441 aggccagctc gcgcaagctc tcgaacgcgc tcggcgccac gcccgcggcc ctgctcgccg
     1501 ggggctcgct cgagaaggat ttcgacctcg ccgccttgcc cgcgaaggac ggcctcgagt
     1561 gggcgaaggc cacgccgaag atcaaggacg ggccgttcca ggccgtgaac atcggctttc
     1621 gcggcaagga cctcgccgcg gtcgagatcg tcgacagctt cggccagcat tcgctgttgc
     1681 agttcgccca gttcgccgcc aacgtgccgc tcgcggccga gagcttccgc ttcaccctgc
     1741 ctgcgggcgc cgacctgatc gagcaatagg gcggtctcgc gcggcccggc gggtcgctct
     1801 cagcgttcgc tcgaaagcgc ccattcgatg cgcacgccca cgatcgtcgc gcgcgtgccg
     1861 gcgcgtccgg cgacgcgcca gacctgctgc acgagcggtt gcagcgcgag cgccggcgtt
     1921 ggcttccagc gcgccgcgac ctcgaccgtg gtctcgtgcg ttgccaccgg ttcggcgcgc
     1981 gccgcctgca ggcggcgctg ctcggcgccg atgcgggcga gcgcgatgcc ggccgtcagc
     2041 gccgacgggc cggcgtcgcc ccacgggcga tcgacgagca cgccggcatc gaaggccgc
//
LOCUS       DASVHM010000135         1806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1091703, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000135 DASVHM010000000
VERSION     DASVHM010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1091703"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            317..1504
                     /locus_tag="VF308_02615"
     CDS             317..1504
                     /locus_tag="VF308_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007850443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation pathway signal
                     protein"
                     /protein_id="HEX7435575.1"
                     /translation="MNRRNFIRLVGGGVLGTAGGLLTACSADYPAGAVAAWRGPAPSE
                     DVRRWALGHAILAPNSHNRQPWLADLREPNAITLFVDRERMLPQTDPWFRQIVVSQGT
                     FLELLVIALRERGLEPEVEVFPEGDFAPRSVDDRPVARVSWTSGAPVARKDPLFTQIL
                     KRQTAKVDYDTGHPVAPAVVDALATALPPDAGFGLRFGGSVDAARLEPLRQLCWDSAR
                     VELGTPRTVMESMRLTRVGPAEIAANPDGISLNTPLLRAFDAVGLFDRTHPPAAGDAA
                     FKSMLSMFEGHSRSAMGFIWLGTATARNAAARKTRSAEVAAGRAYVRLQLKATELGLQ
                     MHPMSQAPQEFAEMKPHYDRLHQLTLGKPAEQETVQMFCRIGYCAAQQHTPRRGVDAI
                     IRA"
     gene            1501..>1806
                     /locus_tag="VF308_02620"
     CDS             1501..>1806
                     /locus_tag="VF308_02620"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX7435576.1"
                     /translation="MKSTPRSPAARPEAGIPRPSAPRERNRSETTARILGAVGEVLAR
                     DGFGALGVNAVAKHAGVDKVLIYRYFGGMPELLRAWGESGRFWPGLDELLGANREAFL
                     "
BASE COUNT          280 a          649 c          621 g          256 t
ORIGIN      
        1 gttccagcag gcagcgaacc agaccgtgag cggcgtgcgg gttcggtcga agatggttcc
       61 cgccgtcacg gacgtgcggc tgccacagtc cgtgcacatg aacctcccgt ctcccagccg
      121 ccatccacca gcgtggccgc actccgggct cttgagccag cagagaaagt cactcggcat
      181 gccgggccga gacccggcgg gctctcgcga gcagcgatcc cgtccggcgt gcgctcgcaa
      241 gccgggtgaa ccgcttgaca agtcaccaga aggtgactaa tctttgtcac tcgatggtga
      301 caaaaggagc aaaccaatga atcggaggaa cttcatccgt ctcgtcggcg gcggcgtcct
      361 cggcacggcc ggtggcctgc tcacggcctg ctcggccgac tacccggccg gagcggtggc
      421 cgcgtggcgc ggcccggcgc cttcggagga cgtgcggcgc tgggccctcg gtcatgcgat
      481 cctcgcgccg aattcgcaca accgccagcc ctggctggcc gacctgcgcg agccgaatgc
      541 gatcacgctg ttcgtcgacc gcgagcgcat gctgccgcaa accgacccgt ggtttcggca
      601 gatcgtggtc agccagggaa cgttcctgga gctcctggtg atcgcgctgc gcgagcgcgg
      661 cctcgagccg gaagtcgagg tgttcccaga aggcgacttc gcgccgcgca gcgtcgacga
      721 tcggccggtc gcgcgcgtca gctggacctc gggtgcgccc gtcgcgcgca aggacccgct
      781 cttcacgcag attctcaagc gccagaccgc gaaggtcgac tacgacaccg gccacccggt
      841 cgcgccggcg gtggtcgacg ccctggccac ggcgctgccg cccgacgccg gcttcggcct
      901 gcgcttcggc ggcagcgtcg atgccgcccg gctcgagccg ctgcgccagc tgtgctggga
      961 ctcggcccgg gtcgagctgg gcacgccgcg cacggtcatg gaaagcatgc gcctgacccg
     1021 cgtcggcccg gccgagatcg cggccaaccc cgacggcatc agcctcaaca cgccgctgct
     1081 gcgtgcgttc gatgccgtcg ggcttttcga ccgcacgcat ccgccggcgg cgggcgacgc
     1141 cgcgttcaag agcatgctgt cgatgttcga gggccacagc cgcagcgcga tgggcttcat
     1201 ctggctcggc accgcgacgg ctcgcaacgc cgcggcccga aagacccgca gtgccgaagt
     1261 cgccgccggc cgcgcctatg tgcgtttgca gttgaaggcg actgaactcg gcctgcagat
     1321 gcatccgatg agccaggcgc cgcaggagtt tgccgagatg aagccgcact acgaccgcct
     1381 gcaccagctc acgctcggca aaccggccga acaggagacg gtgcagatgt tctgccgcat
     1441 cggctactgc gcggcgcagc agcacacgcc gcggcgcggc gtcgatgcga tcatccgggc
     1501 gtgaagtcga cgccacgatc acccgcggcc cggcccgagg cgggcatacc ccgaccgagt
     1561 gcgccgcgcg agcgcaaccg ttcggagacg accgcgcgca tcctcggcgc ggtcggcgag
     1621 gtcctggcgc gcgacggctt cggcgcgctc ggcgtgaacg cggtcgccaa gcatgccggc
     1681 gtcgacaagg tcctgatcta ccgctacttc ggcggcatgc cggagctgct gcgggcctgg
     1741 ggcgaaagcg gacgcttctg gcccgggctc gacgaactcc tgggcgcgaa ccgcgaagcc
     1801 ttcctg
//
LOCUS       DASVHM010000136         2193 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1163478, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000136 DASVHM010000000
VERSION     DASVHM010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1163478"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..429)
                     /locus_tag="VF308_02625"
     CDS             complement(<1..429)
                     /locus_tag="VF308_02625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435577.1"
                     /translation="MKRVFVTEYVGLSTRLEALAMAFLISEYFGHEVCIDWHELDALN
                     VVGAHRRGRGVLGRIDSLKLRNYDAASFHRVDRHRNVVLRTHEGPRHLLDKLYLPTAR
                     RVKLRPDLIETIRETFARYAGRPLVGVHIRRGDFPLLGNEA"
     gene            complement(467..1051)
                     /locus_tag="VF308_02630"
     CDS             complement(467..1051)
                     /locus_tag="VF308_02630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008643720.1"
                     /note="This protein belongs to a clade of uncharacterized
                     proteins related to peroxidases such as the
                     alkylhydroperoxidase AhpD; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxidase-related enzyme"
                     /protein_id="HEX7435578.1"
                     /translation="MNLPISRYPVPPLLELPEDLRQRILEVQEKSGFVPNVFLAFSHR
                     PDEFRAFFAYHDALMLKPSGLTKGEKEMIVVATSGANNCLYCVVAHGAILRIYEKNPL
                     VADQVAVNYRKADIGPRQKAMLGFAMKVCTESNAIGEDDFAALREHGFDAEDAWDIAA
                     ITALFGLSNRMANFTSMRPNDEFYLLGRLPRPKP"
     gene            complement(1048..>2193)
                     /locus_tag="VF308_02635"
     CDS             complement(1048..>2193)
                     /locus_tag="VF308_02635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011804992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7435579.1"
                     /translation="LAYVVEENVLAWRMVRLHGAAAAQAARFRKVSEALRRLSIKAVV
                     AGATMTPITQVLAACALSAVIVTALWQSSSHGTSVGAFASFVAAMLMLVAPIKHLSEV
                     AGPITRGLVGLERGAALIEDTPVERGGGFDGGRARGALELRGVTMRYASDPHPALEDV
                     NLELRVGESVALVGPSGAGKSTLVNLLPRFLEPSGGKLLLDGRELSDWDVNALRRQFA
                     LVSQDVVLFNDSVAANVALGSVPDRQRVEEALRAANLLDFVRGLPNGMDTLIGHNGSQ
                     MSGGQRQRLAIARAIYKDAPILLLDEATSALDSESERLVQQALDSLLHERTSLVIAHR
                     LSTVERADRIVVLENGRVVQQGTHAELLGRGGLYAKLHALQFSEIAA"
BASE COUNT          333 a          718 c          801 g          341 t
ORIGIN      
        1 cgcttcgttg cccaagagcg gaaagtcgcc gcgccggatg tgcacgccga ccagcggccg
       61 gccggcatag cgggcgaagg tctcgcggat cgtctcgatc aggtcggggc gcagcttgac
      121 gcggcgcgcc gtcggcaggt agagcttgtc gagcaggtgg cgcggccctt cgtgggtgcg
      181 cagcacgacg ttgcggtgcc ggtcgacgcg gtggaacgac gcggcgtcgt agttgcgcag
      241 cttcaggctg tcgatgcgac ccagcacgcc gcgcccgcgg cggtgcgcgc cgacgacgtt
      301 gagcgcgtcg agctcgtgcc agtcgatgca gacttcgtga ccgaaatact ccgagatcag
      361 gaaggccatc gcgagggctt cgagccgcgt gctcaagccg acgtactcgg tgacgaagac
      421 gcgcttcatg cggctcgcgg cgcgccggcg cggcgcccgg cgtcgctcaa ggcttgggcc
      481 tgggcaggcg cccgagcagg tagaactcgt cgttgggccg catcgaggtg aagttggcca
      541 tccggttcga gagaccgaag agggcggtga tcgcggcgat gtcccaggcg tcctcggcgt
      601 cgaagccgtg ttcgcgcagc gccgcgaagt cgtcctcgcc gatcgcgttc gactcggtgc
      661 agaccttcat cgcgaaaccg agcatcgcct tctggcgcgg gccgatgtcg gccttgcgat
      721 agttcaccgc cacctggtcg gcgacgagcg ggttcttctc gtagatgcgc aggatcgccc
      781 cgtgcgcgac cacgcagtag aggcagttgt tggcgccgct cgtcgcgacg acgatcattt
      841 ccttctcgcc cttggtgagg cccgagggct tgagcatgag cgcgtcgtgg tacgcgaaga
      901 aggcgcggaa ctcgtccggg cggtgcgaaa acgcgaggaa cacgttcggc acgaagcccg
      961 atttctcctg cacttcgagg atgcgctggc gcaggtcttc gggcagttcc aggagcggcg
     1021 gaacggggta gcggctgatc gggaggttca tgcggcgatc tcgctgaatt ggagcgcgtg
     1081 aagtttggca tagaggccgc cccgaccgag cagctcggcg tgtgtgccct gttgcacgac
     1141 gcggccgttc tcgagcacga cgatgcggtc ggcgcgctcc accgtcgaga ggcggtgggc
     1201 gatgacgagg ctggtgcgct cgtgcagcag cgagtcgagg gcctgctgca cgaggcgttc
     1261 cgattccgag tcgagtgccg aggtggcttc gtcgaggagc aggatcggcg catccttgta
     1321 gatcgcccgc gcgatggcga ggcgctggcg ctggccgccc gacatctggc tgccgttgtg
     1381 cccgatgagc gtgtccatgc cgttcggcag gccgcgcacg aagtcgagca ggttggcggc
     1441 gcgcaaggcc tcttcgaccc gctggcgatc gggcacgctg ccgagcgcga cgttggcggc
     1501 cacgctgtcg ttgaacagca cgacgtcctg gctcaccagc gcgaactggc gccgcagcgc
     1561 gttgacgtcc cagtccgaca gctcccggcc gtcgagcagc agcttgccgc cgctcggttc
     1621 gagaaagcgc ggcagcaggt tcacgagggt cgacttgccg gcgcccgaag gcccgaccag
     1681 cgcgaccgat tcgcccacgc gcaactcgag gttcacgtct tcgagggccg gatgaggatc
     1741 gctggcgtag cgcatcgtca cgccgcgcag ttcgagcgcg ccgcgcgccc gtccgccgtc
     1801 gaagccgccg ccgcgttcga ccggcgtgtc ttcgatcagc gccgcaccgc gctcgagccc
     1861 gacgagaccc cgcgtgatcg gccctgcgac ctcggacagg tgcttgatcg gcgcgaccag
     1921 catcagcatc gcggcgacga aggaggcgaa ggcgccgacc gacgtgccat gcgagctgct
     1981 ctgccagagc gccgtgacga tgacggccga aagggcgcag gccgccagca cctgggtgat
     2041 cggcgtcatc gtcgcgccgg cgaccaccgc cttgatcgag aggcggcgca gcgcttcgct
     2101 gactttgcgg aagcgcgccg cctgcgccgc cgctgcgccg tgcaggcgca ccatgcgcca
     2161 ggcgaggacg ttctcctcga cgacgtaggc gag
//
LOCUS       DASVHM010000137         7161 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_587050, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000137 DASVHM010000000
VERSION     DASVHM010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7161
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_587050"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..121
                     /gene="glcE"
                     /locus_tag="VF308_02640"
     CDS             <1..121
                     /gene="glcE"
                     /locus_tag="VF308_02640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017333241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycolate oxidase subunit GlcE"
                     /protein_id="HEX7435580.1"
                     /translation="KSAGVFAPLSTPLLRIHRGLKHAFDPDGVFNPGRLVADL"
     gene            137..1375
                     /gene="glcF"
                     /locus_tag="VF308_02645"
     CDS             137..1375
                     /gene="glcF"
                     /locus_tag="VF308_02645"
                     /EC_number="1.1.99.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019562060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycolate oxidase subunit GlcF"
                     /protein_id="HEX7435581.1"
                     /translation="MQTHLSPEFEHTAEGREAEAILRKCVHCGFCTATCPTYQLLGDE
                     LDGPRGRIYLMKQMLEGADVTRSTQQHLDRCLTCRNCESTCPSGVEYGNLVEIGRRIV
                     EERVERPAGEKAVRWLLREGLTSPLFAPAMRIGQLVRPLLPEALKRKVPARANARAGT
                     WPTREHARKVLMLAGCVQPALMPNINGATARVLDAAGIQTVLAAGAGCCGALRTHLGD
                     HEGGLADMRRNVDAWWPLVAAGAVEAIVMNASGCGVTVKEYGHALAHDPVYADKAARI
                     GALTRDLSELLPGLVETLRPRLDRTRAPRLAYHPPCTLQHGQQLRGGVEAHLGALGFE
                     IEVARSESHLCCGSAGAYSVLQPKIAYELRDRKLGHLAALEPQCIVSANIGCIQHLQT
                     GTPTPVRHWVEVLDEALVPG"
     gene            1411..3942
                     /locus_tag="VF308_02650"
     CDS             1411..3942
                     /locus_tag="VF308_02650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEX7435582.1"
                     /translation="MQATRPAPSSKTTRTWPERIFGRWWRRQSAARQDRFATLGPLIS
                     VLLFLAAIISAFWYLRNEEFEREQEAVRRDTEVSQQSVRLRLIENQEQLVHLARDIIS
                     GTLDHDAFIVQASNFTREHPEITNLIWIGGDRARIASYSATSFPPETGISGDDTPASL
                     PVKGSGSAPEIAFSSARDLRQTIYSAPFTDSFGNAVFQAQIPLLNRSAFSGTLVAEYS
                     IERLVRYQVPSEVSNRHAIALLDAQDRTLASTVMTSPGARAKRPSIVYEVPVAPAGNG
                     MVLRGQGHRTSIGLISNTLFWMVVALSALTVWMLLGTWRHMARRLQMQAALVSETNFR
                     RAMENSMLTGMRAMDMEGRISYVNPAFCAMTGFGDADLIGQRQPFPYWPLDRLEENSR
                     LLLQELQGRSPPGGIEVKVMRKDGSLFDARMYVSPLVDPKGQQTGWMTSMTNITEAKR
                     IRDQLSASHERFTTVLEGLDAAVSVLSVQRAELLFANRSYRLWFGADSKGHALLAGED
                     SGIPFAATSDDAVDDLGGLPTQELTEAGSDSREVFVASLQKWFEVRARYLQWTDGRLA
                     QMLIATDISERRNAETLAASQAEKAQVTSRLVTMGEMASSVAHELNQPLTAITNYCNG
                     MVTRVRNDAIDKADLVAALQKTSRQAERAGQIIHRIRAFVKRSEPQRQLASAQNIVDD
                     AVDLAGIELRRRNVAIHTYVAQRLPPLLADPILIEQVVLNLLKNSAEAIDNAPLPQAR
                     RNIELRVVPRHTLEEGEVIEFTVIDMGPGLKDEVIARMYEAFFSTKADGLGIGLSLCR
                     SIIESHRGRIKATNLYNGETAVGCRFSFTLPLEPSRTEAPVAVTA"
     gene            3939..4562
                     /locus_tag="VF308_02655"
     CDS             3939..4562
                     /locus_tag="VF308_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX7435583.1"
                     /translation="MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVKCFDSAESFL
                     SRFDPREVACLIADIRMDGMSGLELQDRLLERRSPLPVTFITGHGDVPMAVTTMKKGA
                     EDFIEKPFKEDELVSLVEKMLERARVDFSKHQEAASRDALLSRLTTREAQVLERIVAG
                     RLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIALGAQSKV"
     gene            4621..5496
                     /locus_tag="VF308_02660"
     CDS             4621..5496
                     /locus_tag="VF308_02660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007848532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase"
                     /protein_id="HEX7435584.1"
                     /translation="MTAQLIDGVALSKQIRAGVAERAAALAARGHRPGLAVILVGDDP
                     ASQIYVRGKVRACEEAGLHSVFDKYDATLGEAELLARIDALNADPAIHGILVQMPLPR
                     HIAPQKVIERIAAAKDVDGFSVQSAGELVSGLPGFKPCTPYGCMKLIESTGNGLRGKH
                     AVVIGRSNTVGKPMALLLLQANATVTICHSATADLGQHTRLADVVVAAVGRRNTLTAD
                     MVKPGAIVIDVGMNRNDAGKLCGDADFAGVSQVASAITPVPGGVGPMTITMLLVNTLE
                     AAERAAATLFRQSAP"
     gene            5493..>7161
                     /locus_tag="VF308_02665"
     CDS             5493..>7161
                     /locus_tag="VF308_02665"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HEX7435585.1"
                     /translation="MNPLLDFSTLPRFAEIRPEHIAPAVDELVSAADAALVRATSADV
                     PADYEALSAVLDVATERLARAWSTVSHLHGVADTPELRAAYTEKLPKVVDFHTRLGAD
                     ERLYAKYKAVLADPRSAALTASRKKALANALRDFVLSGAELEGPAKARFAQVQDRLAE
                     CGQKFSEHVLDATDGYAWYATDAELAGVPADAKASMRAGAATAGRDGYKVTLHMPSYL
                     PVMQHGQNRALRERLYTAYVTRASELGPAALDNAALMRELLELRAEEARLLGYRDYAE
                     LSLVPKMADSPQQVLDFLHDLGRRARPGAERDIAELREFARTELGLATLEAWDMAFAA
                     ERLKERRYAFSEQEVRQYFTEPKVLEGLFNIVETLFEVTIRADEAPVWHPSVRFFRIE
                     RRSGPDGGRLVGQFYLDPYARPGKRPGAWMGDARDRWVRPEGNLQTPVAYLVCNFAAP
                     QDGKPALLTQDDVTTLCHEFGHGLQLMLTQVDDLGVSGISGVEWDAVELPSQFMENFC
                     WEWEVVKRLTAQVDTGEALPRVLFDRMLAARNFHSGLQTLRQVELALL"
BASE COUNT         1211 a         2570 c         2330 g         1050 t
ORIGIN      
        1 caagtcggcc ggcgtcttcg cgcccctgag cacgccgctg ctgcgcatcc accgcggcct
       61 caagcacgcc ttcgacccgg acggcgtgtt caatcccggg cgtctggtcg ccgatctctg
      121 acgcaccctc accgcgatgc aaacccatct gagtcccgag ttcgagcaca ccgcagaggg
      181 tcgggaggcc gaggcgatcc tgcgcaagtg cgtgcactgc ggcttttgca ccgcgacctg
      241 tccgacttac cagttgctgg gcgacgagct cgacggcccg cgcgggcgca tctacctgat
      301 gaagcagatg ctcgaaggcg ccgatgtcac gcgcagcacc cagcagcatc tcgaccgctg
      361 cctgacctgc cgcaattgcg aaagcacctg cccgagcggc gtcgaatacg gcaatctggt
      421 cgagatcgga cgccggatcg tcgaggaacg cgtcgagcgc cctgcgggcg aaaaggccgt
      481 gcgctggctg ctcagggaag gcctgacctc gcccctgttc gcgccggcga tgcgaatcgg
      541 tcagctggtg cggccgctcc tgcccgaggc gctgaaaagg aaggtgccgg cgcgggcgaa
      601 cgcgcgcgcc ggcacctggc cgacgcgcga acacgcgcgc aaggtgctga tgctcgccgg
      661 ctgcgtgcag ccggccctga tgcccaacat caacggcgcc accgcgcgcg tgctcgacgc
      721 cgccggcatc cagaccgtcc ttgccgccgg ggccggctgc tgcggcgcct tgcgcaccca
      781 cctcggcgac cacgagggcg gcctggccga catgcgccgc aacgtcgacg cctggtggcc
      841 gctggttgcc gccggtgcgg tcgaagccat cgtcatgaac gcctccggct gcggcgtgac
      901 ggtgaaagag tacggccatg cgctcgccca cgacccggtc tacgccgaca aggccgcgcg
      961 catcggcgcg ctgacccgcg acttgagcga gttgctgccc ggactggtcg agacgctccg
     1021 gccgcgcctg gaccgcaccc gcgcgccgcg cctcgcctac cacccgccat gcacgctgca
     1081 acacggccag cagttgcgcg gtggcgtcga ggcgcatctc ggtgcattgg gcttcgagat
     1141 cgaggtggcg cgcagcgaaa gccacctgtg ctgcggctcg gccggcgcct attcggtgct
     1201 gcagcccaag atcgcctacg aactgcgcga ccgcaagctc ggccacctcg cggcgctcga
     1261 gccgcagtgc atcgtctcgg ccaacatcgg ctgcatccag cacctgcaga caggcacgcc
     1321 gacaccggtc aggcactggg tggaggttct cgatgaggcg ctggtgcccg ggtgaccggg
     1381 acggtcaacc atcggcccga taatcacgcg atgcaagcga cccggcccgc cccgagttcg
     1441 aagaccaccc ggacctggcc cgaacgcatc ttcgggcgct ggtggcggcg ccagtcggcg
     1501 gcgcgccagg atcgcttcgc aacgctcggc ccgctgattt cggtgctgct ctttctcgcc
     1561 gcgatcatct cggcgttctg gtacctgcgc aacgaagagt tcgagcgcga gcaggaagcc
     1621 gtgcgtcgcg ataccgaggt gtcgcagcaa tcggtgcggc tgcgcctgat cgaaaaccag
     1681 gaacagctgg tgcacctcgc ccgcgacatc atcagcggca cgctcgatca cgacgcgttc
     1741 atcgtgcagg cctcgaactt cacgcgcgag caccccgaaa tcaccaacct gatctggatc
     1801 ggcggcgacc gggcgcgcat cgcgagctac tcggcgacga gctttccgcc cgaaaccgga
     1861 atcagcggcg acgacacgcc ggcgtcgctg ccggtcaaag gctcgggcag cgcccccgag
     1921 atcgcgttct cgagcgcccg cgacctgcgc cagacgatct attcggcgcc attcaccgac
     1981 agcttcggca acgcggtgtt ccaggcgcag atcccgctgc tcaaccgcag cgccttttcg
     2041 ggcacgctgg tcgccgagta ttcgatcgag cggctggtgc gctatcaggt tccttcggaa
     2101 gtctcgaacc ggcacgcgat cgcgctgctc gacgcccagg accgcacgct cgcgagcacc
     2161 gtgatgacga gccccggcgc gcgggccaag cgcccctcga tcgtctacga agtgcctgtc
     2221 gccccggccg gaaacggcat ggtgctgcgc ggccagggcc accgcacgtc gatcggtctg
     2281 atcagcaaca ccctcttctg gatggtcgtc gcgctgtcgg cgctgaccgt ctggatgctg
     2341 ctcggcacct ggcgccacat ggcgcggcgc ctgcagatgc aggccgccct ggtgtcggaa
     2401 accaactttc gccgggcgat ggaaaactcg atgctgaccg ggatgcgggc gatggacatg
     2461 gaaggccgca tcagctatgt gaacccggcc ttctgcgcga tgactggctt cggcgacgcc
     2521 gacctgatcg gccagcgcca gccgtttccc tactggccgc tcgaccgcct cgaagaaaac
     2581 agccggctcc tgctgcagga gctgcagggc cggagtccgc ccggcggcat cgaggtcaag
     2641 gtgatgcgca aggacgggtc gctcttcgat gcacgcatgt acgtctcacc gctggtcgac
     2701 ccgaaaggcc agcagaccgg ctggatgacc tcgatgacca acatcaccga agccaagcgc
     2761 atccgcgacc agctctcggc atcgcacgag cgcttcacga ccgtgctcga gggcctcgac
     2821 gcggcggtgt cggtgctgtc ggtgcagcgc gcggagctcc ttttcgcgaa ccgctcgtac
     2881 cggctctggt tcggcgccga ttcgaaaggg catgcgctgc tcgccggtga agactccggc
     2941 atcccgttcg cggcgaccag cgacgacgcc gtcgacgatc tcggcggcct gccgacccag
     3001 gagctgaccg aagccggctc cgattcgcgc gaggtcttcg tcgcctcgct gcagaaatgg
     3061 ttcgaggtcc gggcgcgcta cctgcaatgg accgacggtc ggctggcgca gatgctgatc
     3121 gcgaccgaca tctccgagcg ccgcaacgcc gagacgctcg ccgcgagcca ggccgaaaag
     3181 gcccaggtga cgagtcgcct cgtgacgatg ggcgagatgg cgtcctcggt cgcgcacgaa
     3241 ctgaaccagc cgctcaccgc aatcacgaac tactgcaacg gcatggtcac gcgggtcagg
     3301 aacgacgcca tcgacaaggc cgacctggtc gccgcgctgc agaagacctc gcgccaggcc
     3361 gagcgcgccg ggcagatcat ccaccgcatc cgcgccttcg tgaagcgcag cgagccgcaa
     3421 cgccagctcg cgagcgcgca gaacatcgtc gacgacgcgg tcgacctcgc cggcatcgaa
     3481 ctgcggcgcc gcaacgtcgc gatccacacc tacgtcgcgc aacgcctgcc gccgctgctg
     3541 gccgatccga tcctgatcga acaggtggta ttgaacctgc tgaagaattc cgccgaggcg
     3601 attgacaacg cgcccctccc gcaggcccgg cgcaacatcg agctgcgggt cgtgccgcgc
     3661 cacacgctcg aagaaggcga ggtgatcgag ttcaccgtca tcgacatggg gcccggcctg
     3721 aaggacgagg tcatcgcgcg catgtacgaa gcgttcttct cgaccaaggc cgacggcctg
     3781 ggcatcgggc tctcgctgtg ccgctcgatc atcgagagcc accggggccg gatcaaggcg
     3841 acgaacctct acaatggaga gaccgcggtg ggctgccgct tctcgttcac gctgcccctc
     3901 gaaccctccc gaaccgaagc ccccgtggct gtcaccgcat gagcctgatt ccgaagaaag
     3961 gcaccgtcta cgtcgtcgac gacgacgagg cggtgcgcga ctcgctgcaa tggttgctcg
     4021 agggcaagga ctaccgcgtc aagtgcttcg actcggccga gtcgttcctg tcgcgctttg
     4081 acccgcgcga ggtcgcctgc ctgatcgccg acatccgcat ggacggcatg agcgggctcg
     4141 aacttcagga tcgcctgctc gaacgccgct cgcccctgcc ggtcaccttc atcaccggcc
     4201 acggcgacgt gccgatggcg gtgacgacga tgaagaaggg cgccgaagac ttcatcgaga
     4261 agcccttcaa ggaagacgag ctggtctctc tggtcgaaaa gatgctcgaa cgtgcgcgcg
     4321 tcgatttttc caagcaccag gaagccgcca gccgcgacgc cctgctctcg cgcctgacca
     4381 cgcgcgaggc ccaggtgctc gagcgcatcg tcgccggccg gctcaacaag cagatcgccg
     4441 acgacctcgg catcagcatc aagacggtcg aggcgcatcg cgccaacatc atggaaaaac
     4501 tcaacgcgaa cacggttgcg gacctgctca agatcgcgct cggggcgcaa tcgaaggtgt
     4561 agttccgcgc cacgacccaa gggccgctcg acgcggccct ttgcatttcg gaagccgggt
     4621 atgactgccc aactcatcga cggtgtcgcc ctttcgaagc agatccgtgc cggcgtggcc
     4681 gagcgcgccg ccgcgctcgc cgcacgcggc caccggcccg ggctggcggt gatcctggtc
     4741 ggcgacgacc cggccagcca gatctacgtg cgcggcaagg tccgggcctg cgaagaggcc
     4801 ggtttgcact cggtcttcga caagtacgac gccacgctcg gcgaggccga gttgctggcc
     4861 cgcatcgacg cgttgaacgc cgacccggcg atccacggca tcctggtgca gatgccgctg
     4921 ccgcgccaca tcgcgccgca gaaggtgatc gagcgcatcg cggcggcgaa ggacgtcgac
     4981 ggcttctcgg tgcagagcgc cggcgaactg gtttccggcc tgcccggctt caagccgtgc
     5041 acgccctacg gctgcatgaa gctgatcgag agcaccggca acgggctgcg cggcaagcac
     5101 gccgtcgtga tcggccgcag caacacggtc ggcaagccca tggcgctgct gctcttgcag
     5161 gccaacgcca ccgtcaccat ctgccacagt gcgaccgccg acctcggcca acacacccgc
     5221 ctggccgacg tggtggtcgc ggcggtcggg cgccgcaaca cgctgaccgc cgacatggtg
     5281 aagcccggag cgatcgtgat cgacgtcggc atgaaccgca acgacgccgg caagctctgc
     5341 ggcgatgccg atttcgccgg cgtgtcgcag gtcgcctccg ccatcacccc ggttcccggc
     5401 ggggtcggac cgatgacgat cacgatgctg ctggtcaaca ctctcgaggc cgccgaacgg
     5461 gcggccgcca ccctctttcg ccaaagcgca ccatgaaccc cctgctcgac ttttcaaccc
     5521 tgccccgatt cgccgagatc cggcccgaac acatcgcgcc cgccgtcgac gaactcgtca
     5581 gcgccgccga tgccgcgctg gtccgcgcga ccagcgccga tgtgcctgcc gactacgagg
     5641 cgctctcggc ggtgctcgac gtcgccaccg agcggctcgc ccgcgcctgg agcaccgtga
     5701 gccacctgca cggggtggcc gacacgccgg agctgcgcgc tgcctacacc gagaagctgc
     5761 cgaaggtcgt cgacttccac acccggctgg gcgccgacga gcggctctac gccaaataca
     5821 aggcggtgct cgcggacccg cgctcagcgg cgctgacggc ctcgcgcaag aaggcgctgg
     5881 ccaacgcgct gcgcgatttc gtgctctccg gcgccgaact cgaaggcccg gcgaaggcgc
     5941 gtttcgccca ggtgcaggat cgcctcgccg agtgcggaca gaagttttcc gagcatgtgc
     6001 tcgatgcgac cgatggctat gcctggtacg cgacggacgc cgaactcgcc ggcgtgcccg
     6061 ccgacgcgaa agcgtcgatg cgcgctggcg cggcgaccgc aggccgcgac ggctacaagg
     6121 tgaccctgca catgccgagc tacctcccgg tcatgcagca cggccaaaac cgtgccctgc
     6181 gcgagcggct ctacacggcc tacgtcacgc gggccagcga actcggcccg gctgcgctcg
     6241 acaatgccgc gctgatgcgc gaactcctcg aactgcgcgc cgaagaggcg cgccttctcg
     6301 gctaccgcga ctatgccgag ctgtcgctgg tgccgaagat ggccgactcg ccgcaacagg
     6361 tgctcgactt cctgcacgat ctcggccggc gcgcccggcc gggcgccgag cgcgacatcg
     6421 ccgagctgcg cgagttcgcg cgcaccgagc tcgggctcgc cacgctcgag gcctgggaca
     6481 tggcgtttgc ggccgaacgc ctgaaggagc gccgctacgc cttcagcgaa caggaggtgc
     6541 gccagtattt caccgagccc aaggtgctgg aaggtctctt caacatcgtc gaaacgctgt
     6601 tcgaagtgac gatccgcgcc gacgaggcgc cggtgtggca cccgagcgtg cgcttcttcc
     6661 gcatcgaacg ccgcagcggc cccgacggcg gccggctcgt cggccagttc tacctcgatc
     6721 cctacgcccg gcccggcaag cgccccggcg cctggatggg cgacgcgcgc gaccgctggg
     6781 tccggcccga aggcaacctg cagaccccgg tcgcctatct cgtctgcaac ttcgcggcgc
     6841 cgcaggacgg caagcccgcc ctgctgacgc aagacgacgt gaccaccctg tgccacgagt
     6901 tcggccatgg cttgcagctg atgctcacgc aggtcgacga tctcggcgtc tcgggcatct
     6961 ccggggtcga atgggacgcg gtcgagctgc cgagccagtt catggagaac ttctgctggg
     7021 agtgggaagt cgtgaaacga ctcaccgccc aggtcgacac cggcgaagcg ctgccgcgcg
     7081 tgcttttcga ccgcatgctc gcggcgagga acttccacag cggcctgcag acgctgcgcc
     7141 aggtcgagct cgcgctgctc g
//
LOCUS       DASVHM010000138         2392 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1380097, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000138 DASVHM010000000
VERSION     DASVHM010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2392
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1380097"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1931)
                     /gene="acs"
                     /locus_tag="VF308_02670"
     CDS             complement(<1..1931)
                     /gene="acs"
                     /locus_tag="VF308_02670"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEX7435586.1"
                     /translation="MSSEPHVYPPPAAAVKGAWVSGMPAYQALCDEAARDYTGYWARL
                     ARELISWRTPFKKVLNADKPPFFKWFEDGTLNASYNCLDRNVENGLGDKTAIIFEADD
                     GKVTKVTYSELLAQTCRLANAMKARGIVKGDRVVIYMPMSIEGVVAMLACARVGAPHS
                     VVFGGFSAQSLRDRIADTGAVLVVTADEQLRGGKALPLKAIVDEALSGPGHAVRDVIV
                     YRRTGGKVDFVAPRDKWLHELVGNEPSTCEPEWVLAEHPLFLLYTSGSTGKPKGVQHS
                     TGGYLVQAALTTKWTFDLKPGDVFWCTADIGWVTGHTYITYGPLALGGTEVVFEGIPT
                     YPDAGRFWQTIAKHKVSVFYTAPTAIRALIKTAEGNDKVHPKSYDLSSLRILGTVGEP
                     INPAAWEWYHKNVGGGRCPIVDTWWQTETGGHMITPLPGATPLVPGSCTLPFPGIDAA
                     IVDEQGHDVPNGTGGILVIKKPWPGMIRTIWGDSERYARSYYPEEFHGKYYLAGDGAS
                     RDEKTGYFTITGRIDDVLNVSGHRMGTMEIESALVAHTALVAEAAVVGRPDETTGEAI
                     CAFVVLKRPRPTGEEAKKIAKELRDWVAKEIGPIAKPKDIRFGDNLPKTRSGKIMRRL
                     LRSVANGEAITQDTSTLENP"
     gene            2168..>2392
                     /locus_tag="VF308_02675"
     CDS             2168..>2392
                     /locus_tag="VF308_02675"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019921628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HEX7435587.1"
                     /translation="MTTIRHADFADSIAAALQYISFYHPADYIAHLARAYELEQAPAA
                     KDAIAQILTNSKMCAEGRRPICQDTGIVNVF"
BASE COUNT          344 a          818 c          808 g          422 t
ORIGIN      
        1 gggttctcga gcgtcgacgt gtcctgcgtg atcgcctcgc cattggctac cgagcgcagc
       61 aggcgccgca tgatcttgcc gctgcgcgtc ttcggcaggt tgtcgccgaa gcggatgtcc
      121 ttcggcttgg cgatcgggcc gatctccttg gcgacccagt cgcgcagctc cttggcgatc
      181 ttcttcgcct cctcgccggt cgggcgcgga cgcttgagga ccacgaaggc gcagatcgcc
      241 tcgccggtcg tctcgtcggg tcggccgacg acagcggcct cggcgacgag cgccgtgtgc
      301 gcgacaagcg ccgactcgat ctccatcgtc cccatgcggt ggccgctgac gttgaggacg
      361 tcgtcgatgc ggccggtgat cgtgaagtag ccggtcttct cgtcgcggct cgcgccgtcg
      421 ccggcgaggt agtacttgcc gtggaactct tccgggtagt agctcctggc gtagcgctcc
      481 gagtcgcccc agatcgtgcg gatcattccc ggccacggct tcttgatgac gaggatgccg
      541 cccgtgccgt tcggcacgtc gtggccctgc tcgtcgacga tcgccgcgtc gatgcccggg
      601 aacggcaagg tgcacgaacc cggaacgagc ggcgtcgcgc ccggcagcgg cgtgatcatg
      661 tggccgccgg tctcggtttg ccaccaggtg tcgacgatcg ggcagcggcc gccgccgaca
      721 ttcttgtgat accactccca ggccgcgggg ttgatcggct cgccgacggt gccgaggatg
      781 cgcaggctcg acaggtcgta gctcttgggg tggaccttgt cgttcccttc ggctgtcttg
      841 atgagcgcgc ggatcgccgt cggcgcggtg tagaagaccg agaccttgtg cttggcgatc
      901 gtctgccaga agcggcccgc atcggggtaa gtggggatgc cttcgaagac gacctcggtg
      961 ccgccgagcg cgagcggccc gtacgttatg taagtgtggc cggtgaccca gccgatgtcg
     1021 gcggtgcacc agaagacgtc gccgggcttg aggtcgaagg tccacttcgt cgtcagcgcc
     1081 gcctgcacca gatagccgcc ggtcgagtgc tgcacgccct tcggcttgcc ggtcgatccc
     1141 gacgtgtaga gaaggaagag cggatgctcg gcgagcaccc attccggctc gcacgtcgaa
     1201 ggctcgttcc cgaccagctc atgcagccac ttgtcgcgcg gcgcgacgaa gtcgaccttg
     1261 ccgccggtgc gccggtagac gatgacgtcg cgcaccgcgt ggcccggacc gctcagcgcc
     1321 tcgtcgacga tcgccttcag cggcagcgcc ttgccgccgc gcagctgctc gtcggcggtg
     1381 accaccagca cggcgccggt gtcggcgatg cggtcgcgca ggctctgcgc ggaaaagccg
     1441 ccgaagacga ccgagtgggg cgcgccaacg cgcgcgcagg cgagcatcgc gacgacgccc
     1501 tcgatcgaca tcggcatgta gatgacgacg cggtcgccct tgacgatgcc gcgcgccttc
     1561 atcgcgttgg cgaggcggca ggtttgcgcc aggagctcgc tgtacgtgac cttggtgacc
     1621 ttgccgtcgt cggcttcgaa gatgatcgcc gtcttgtcgc cgaggccgtt ctcgacgttg
     1681 cggtcgaggc agttgtacga ggcgttgagc gtgccgtcct cgaaccactt gaagaacggc
     1741 ggcttgtcgg cgttgagcac cttcttgaac ggcgtccgcc agctgatcag ctcgcgcgcc
     1801 aggcgcgccc agtagcccgt gtagtcgcgc gccgcctcgt cgcacagcgc ctggtaggcg
     1861 ggcatgccgg acacccaggc gcccttcacg gcggcagccg gcggtgggta gacgtgtggt
     1921 tctgagctca tgttcgatgt cctcctgcga tcgcgaccgc ctcttttacc tcatgtgcgg
     1981 acccgacaac ttgtgcgccc gcaaacgaag gacacgatgg ccctgctccc cgtcccgccc
     2041 cccgcggcga gcgccagcgc cacgccgccg gccgtttcgg cttcgatgaa ggtcctgatc
     2101 ctcggggtca tgtacggtcc gttcggcggg tcgtagactt gcgggctgcc tgccatcgac
     2161 accgatcatg accacgatcc gccacgccga cttcgccgac agcatcgccg ccgcgctgca
     2221 gtacatcagc ttctaccacc cggccgacta catcgcccac ctggcgcgcg cctacgagct
     2281 cgagcaggcg ccggcggcga aggacgcgat cgcccagatc ctcaccaact cgaagatgtg
     2341 cgccgaggga cggcggccga tctgccagga caccggcatc gtcaacgtgt tc
//
LOCUS       DASVHM010000139         6516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_659241, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000139 DASVHM010000000
VERSION     DASVHM010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6516
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659241"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1262
                     /locus_tag="VF308_02680"
     CDS             <1..1262
                     /locus_tag="VF308_02680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7435588.1"
                     /translation="EPGTRSAARVALGRAWLAALDTTKAVDWARRAHEADRGAEGPAL
                     LALELLPGTPEAEAIVTGYLEAKPADANMRLLFVRSLAGSQRYADATQQLEQLTRRDP
                     QLAPPWLTLGAIQLEMHHPVEATAALSNYVRLIEAGSGGGGAVGPAGPEAQGADDAAP
                     GTPDQALTQAWLLLAQAAEEQRDYAAAEGWLARIDNPQRALEVQLRRASILARQGKLA
                     EARASIRRVPEQTPADARAKLLAEAQLLRDQKAWSEAEKVLAQANKQFPDDVDLLYEQ
                     AMMAEKGDHLEEMERLLRRVIDLKPDHHHAYNALGYSLAERKLRLPEARALIQKALEL
                     SPGEPFITDSLGWVEYRLGNRDEALRLLRGAYQSRPDPEIAAHLGEVLWASGQAEEAR
                     RVWREGRSRDSSNDVLKETLARLRVEL"
     gene            1259..1813
                     /locus_tag="VF308_02685"
     CDS             1259..1813
                     /locus_tag="VF308_02685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein LolB"
                     /protein_id="HEX7435589.1"
                     /translation="MSLGGRAAAWVGAAAAAAVLAGCASIPRGGAGLAGEGFSGRLSI
                     RVEAEGAAPAHSLSAAFDLRGDPSAGRLDLSTPLGSVLAQARWSPSQVVLATPRGETN
                     FSDLDALTREVLGESLPVAALFDWLQGRPWPGAPSTPAIGESGAGFEQLGWAVSLARF
                     DEAMVSARRESPPPVTVRIKLDRP"
     gene            1974..2864
                     /gene="ispE"
                     /locus_tag="VF308_02690"
     CDS             1974..2864
                     /gene="ispE"
                     /locus_tag="VF308_02690"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEX7435590.1"
                     /translation="MALRALYDVAAPAKLNLFLHVVGRRTDGYHLLQSVFALIDWCDS
                     LHFELRDDGRLARHDLGAALPADDLCLRAARALAAASGTPLGADISIEKHVPSGSGMG
                     GGSSDAASTLLALNLLWRLRWPRERLAVLALELGADVPFFLGAGNAIVEGIGERLTPL
                     ALPPYWLAVLKPAANVATRAIFASPLLGRSTETDIVKGFIGGGSAKAREGFGEVWSYG
                     RNDLQAAAEAGYAEVAQAAALLQARFGNSRMTGSGSAVFARAGHGERPAGDMPADLPV
                     GWTGRMCRSLTAHPLAGWAD"
     gene            2933..3009
                     /locus_tag="VF308_02695"
     tRNA            2933..3009
                     /locus_tag="VF308_02695"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2967..2969,aa:Gln,seq:ttg)
     gene            3083..4045
                     /locus_tag="VF308_02700"
     CDS             3083..4045
                     /locus_tag="VF308_02700"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEX7435591.1"
                     /translation="MLFNTVLFTGNANPALAQQIAGNLGIELGKAKVGRFSDGEVDVE
                     IQQNVRARDIFVLQPTCAPTNENLMELCIMVDAIKRASARRVTAVIPYFGYARQDRRP
                     RSTRVPISAKVVANLLEAVGVERLLTMDLHADQIQGFFNIPVDNIYASPVLLSDLQSK
                     RYDDLVVVSPDVGGVVRARALAKQAGCELAIIDKRRPKANVSEVMHVIGEVESRNCVI
                     MDDMIDTAGTLVKAAEVLKERGALKVFAYCTHAVFSGPAIERIRASQIDEVVITDTIP
                     LNRDGETCAKVRQLSVAFLFAETIRRISDGESVTSLFAEQNSNF"
     gene            4147..4800
                     /locus_tag="VF308_02705"
     CDS             4147..4800
                     /locus_tag="VF308_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEX7435592.1"
                     /translation="MKFVAYERTLQGTGASRRLRNAQKVPGIVYGAGAPAMIELDHNA
                     LFFALKKETFHSSLLEMELAGKTEQVLLRDYQMHAFKPIVLHIDFQRVDATTKITKKV
                     PLHFINEENSPAVKTDACVVNHVINELNIQCLASQLPEFLTVDLGNLTKGQSLHVNDI
                     ALGEGVKVVTHGKPNPVIASATVQAAEEEVVEAAPVVVAVPAAAPTKTKKNEKQNKK"
     gene            4872..5522
                     /gene="pth"
                     /locus_tag="VF308_02710"
     CDS             4872..5522
                     /gene="pth"
                     /locus_tag="VF308_02710"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013595911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEX7435593.1"
                     /translation="MIRLLAGLGNPGPEYEATRHNAGFWFIDEAARKLGATFLPERAY
                     SGRVARINRPAGPLWLLQPMTFMNLSGKSVAALARFFKIAPEEIMIAHDELDLMPGQA
                     KLKLGGSAAGHNGLKDVEAQLGSADFWRLRLGIGHPGVKAEVVNYVLRKPAPEQREAI
                     EKSIEQSIAALDLVLAGDMDRAMMKIHAKPPRPKPVAAEAPKVSISPGNASSEGSS"
     gene            5519..5938
                     /locus_tag="VF308_02715"
     CDS             5519..5938
                     /locus_tag="VF308_02715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435594.1"
                     /translation="MKFAALGLAIAAGVGCLAGSAAAQTIYRCGNEYTRIPCPNGHPL
                     ESTDPRTAAQHAEARRLVADEKRQAADMARERRRDEAALKPTLASSLGPVPAPAAAAS
                     APKNAVQKKRHRKVQIDDERDFVAAVPGTGKKKSASR"
     gene            complement(5967..6266)
                     /locus_tag="VF308_02720"
     CDS             complement(5967..6266)
                     /locus_tag="VF308_02720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEX7435595.1"
                     /translation="MALLITDECINCDVCEPECPNQAISMGPEIYRIDPSRCTECVGH
                     FDEPQCVQVCPVNCIPVDPAHVETQASLWVRYRLLQREAGVAAAAAEGEPTSAAG"
     gene            complement(6275..>6516)
                     /locus_tag="VF308_02725"
     CDS             complement(6275..>6516)
                     /locus_tag="VF308_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013596146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEX7435596.1"
                     /translation="GKVVVRGLRAVSDFEYEFQMAGMNRQLMPEVETVFLTPSDQYQF
                     VSGTFVREIAMLGGDVSKFVSPLVLDRLRLRVKAD"
BASE COUNT         1089 a         2304 c         2155 g          968 t
ORIGIN      
        1 acgaaccggg cacccgcagc gccgcgcgcg tcgcgctcgg ccgcgcctgg ctcgccgcgc
       61 tggacacgac caaggccgtc gattgggccc ggcgtgccca cgaggcggac cgcggcgccg
      121 aagggccagc tctgctcgcg ctcgaactgc tgcccggaac gcccgaggcc gaggcgatcg
      181 tcacgggtta tctcgaagcc aagcctgccg acgcgaatat gcgcctgctc ttcgtgcgca
      241 gcctcgccgg ctcgcagcgc tatgccgacg cgacccagca actcgaacag ctgacccggc
      301 gcgatccgca actcgcgccg ccctggctca cgctcggcgc gatccagctc gaaatgcacc
      361 acccggtcga ggcgaccgcc gcgctcagca actacgtgcg gctgatcgaa gccggcagcg
      421 gcggcggcgg cgcggtcggg ccggccggcc ccgaggcgca gggcgccgac gacgccgcgc
      481 cgggcacgcc ggaccaggcg ttgacgcaag cctggctgct gctcgcccag gctgccgaag
      541 agcagcgcga ctacgccgcg gccgaaggct ggctcgcccg catcgacaat ccgcagcgcg
      601 cgctcgaggt ccagttgcgc cgagcctcga tactggcgcg ccagggcaag ctcgccgaag
      661 cgcgcgcgtc gatccgccgg gttcccgagc agaccccggc cgatgcccgc gcgaagcttc
      721 tcgccgaggc gcagctgctg cgcgaccaga aggcctggag cgaagccgag aaggtgctgg
      781 cacaggccaa caagcagttt cccgacgacg tcgacctgct ctacgaacag gccatgatgg
      841 ccgaaaaggg cgaccacctc gaggagatgg aacggctgct gcgccgcgtg atcgacttga
      901 agcccgacca ccaccacgcc tacaacgcgc tcggctattc gctcgccgag cgcaagctgc
      961 gcttgcccga ggcacgcgcc ctgatccaga aggcgctcga gctgagcccc ggcgagccct
     1021 tcatcaccga cagcctcggc tgggtcgagt accggctcgg caaccgcgac gaggccctgc
     1081 gcctgttgcg cggcgcctac cagtcgcgtc ccgacccgga gatcgcggcg cacctcggcg
     1141 aggtgctctg ggccagcggc caggccgagg aggcgcggcg cgtctggcgc gaaggccggt
     1201 cgcgggattc gagcaacgac gtgttgaagg aaaccctggc gcgcctgcgc gtcgaactgt
     1261 gagcctcggc ggccgcgccg cggcatgggt cggggcggca gccgcggccg ccgtgctcgc
     1321 cggttgcgcg tcgatcccgc gcggcggcgc gggccttgcc ggcgagggct tttcggggcg
     1381 gctttcgatc cgggtcgaag ccgaaggtgc ggcgccggcg cactcgctca gcgccgcgtt
     1441 cgacctgcgc ggcgacccga gcgccgggcg cctcgacctt tcgacgccgc tcggcagcgt
     1501 cctcgcccaa gcgcgctggt cgccttcgca agtggtgctc gcgacgccgc gcggcgagac
     1561 gaacttttcc gatctcgacg cgctgacgcg cgaggtgctg ggcgaaagcc tgccggttgc
     1621 ggcgctcttc gactggctgc agggccggcc ctggcccggc gcgcccagca caccggcgat
     1681 cggcgaatcc ggagccgggt tcgagcagct cggctgggcc gtgagcctcg cccgcttcga
     1741 cgaggcgatg gtgtcggcgc gccgcgagag cccgccgccc gtgaccgtgc ggatcaaact
     1801 cgaccggccc tgacggatga actgccgccc ccacgctcac ttcgtttgct gtccggcgcg
     1861 agacgcaccg gtccttcggg ccgtccaagc ccgcgcaaac gggcttggag ccgcggccct
     1921 cagccccccg agggggcgct cagcgccctt ggggcgcccc gccgggcgct gacatggccc
     1981 tgcgcgcgct ttacgacgtc gccgcaccgg cgaagctcaa cctcttcctg catgtggtcg
     2041 ggcggcggac cgatggctac cacctgctgc agtcggtctt cgccctgatc gactggtgcg
     2101 actcgctcca tttcgagttg cgcgacgatg gccggctcgc ccgccacgac ctgggcgccg
     2161 cgctgccggc cgatgacctc tgcctgcgtg ccgcccgggc gttggccgcc gcgagcggca
     2221 cgccgctcgg cgccgacatc tcgatcgaaa agcacgttcc atccggttcc ggaatgggcg
     2281 gcggaagctc ggacgcggcc tcgaccctgc tcgcgctgaa ccttctctgg agattgcgct
     2341 ggccgcgcga gcgcctggcc gtgctggcgc tcgaactcgg cgcggacgtg ccgttctttc
     2401 tcggcgccgg caacgccatc gtcgaaggca tcggggaacg cctgaccccg ctcgcgctgc
     2461 caccgtactg gctggccgtc ctcaagccgg ccgcgaacgt cgccacccgt gcgatctttg
     2521 ccagtccgct cctcggtcgc agcactgaaa ctgatatagt taagggtttt attggcggcg
     2581 gttcggcgaa ggctcgagaa gggttcggcg aggtctggtc gtacgggcgc aacgacctgc
     2641 aggcggcggc agaggccggc tacgccgagg tggcgcaagc cgccgcgctg ctgcaggcga
     2701 ggttcggcaa cagccgcatg acgggctcgg gcagcgcggt gttcgcacgg gccgggcacg
     2761 gcgagcggcc agccggggac atgccggcgg atcttcctgt cggctggacc ggcagaatgt
     2821 gccgcagcct cacggcccat ccgctggcgg gttgggcgga ttgagcggtc ggggcgcgca
     2881 aagggccggc gccggggttt tgcggttcga agcgcgagct tcggacctgt gtaggggagt
     2941 cgccaagttg gtcaaggcat cggattttga ttccgacatg cgagggttcg agtccttcct
     3001 cccctgccaa accgcttcgg tcccgatgca accggatgcg cgtcggggct tctgagccac
     3061 gattcgcatc agcggagacg acgtgctttt caacacagtt ctgttcacgg ggaatgccaa
     3121 tcctgcgctc gcgcagcaga ttgcgggcaa cctcggcatc gaactcggca aagccaaggt
     3181 cgggcgcttt tcggacggcg aggtcgacgt cgagatccag cagaacgtgc gcgcccgcga
     3241 catcttcgtg ctccagccga cctgcgcgcc gaccaacgaa aacctgatgg agctgtgcat
     3301 catggtcgac gcgatcaagc gcgcgtcggc gcgccgcgtc accgcggtga tcccgtattt
     3361 cggctacgcc cgccaggacc ggcggccgcg ctcgacgcgg gtgccgatca gcgccaaggt
     3421 cgtcgccaac ctgctcgagg cggtcggcgt cgagcggctg ctgacgatgg acctgcacgc
     3481 cgaccagatc cagggcttct tcaacatccc ggtcgacaac atctacgcct cgccggtgct
     3541 gctctccgac ctgcaatcca agcgctacga cgacctcgtg gtcgtctcgc ccgacgtcgg
     3601 cggcgtggtg cgggcgcgcg cgctcgccaa gcaggccggc tgcgagctgg cgatcatcga
     3661 caagcggcgt ccgaaggcca acgtttccga agtgatgcac gtcatcggcg aagtcgaaag
     3721 ccgcaactgc gtgatcatgg acgacatgat cgacaccgcc ggcacgctcg tgaaggcggc
     3781 cgaggtgctg aaggaacgcg gcgcgctgaa ggtgttcgcg tactgcaccc acgcggtctt
     3841 ctcgggcccg gcgatcgaac gcatccgcgc gtcgcagatc gacgaggtcg tcatcaccga
     3901 caccattccc ctgaaccgcg acggcgagac ctgcgccaag gtgcgccagt tgtcggtcgc
     3961 cttcctcttc gccgaaacca tccggcgcat ttccgacggc gagtcggtca cttcgctctt
     4021 cgccgagcag aacagcaatt tctagtagga aagcgggctc cttcggagcc cttgtctgtg
     4081 gcgggcttcg cccgtcattc acccgaagag cctggtcgcg ggccttcatc agtctggagt
     4141 cattcaatga aattcgtcgc ttatgagcgc acgctgcagg ggaccggagc gagccgccgc
     4201 ctgcgcaatg cgcaaaaggt tcccggcatc gtctacggtg ccggcgcgcc cgccatgatc
     4261 gaactcgatc acaacgccct cttcttcgcg ctcaagaaag agaccttcca ctcctccctc
     4321 ctcgaaatgg aactcgccgg caagaccgag caggtgctgc tgcgcgacta ccagatgcac
     4381 gcgttcaagc cgatcgtgtt gcacatcgac ttccagcgcg tcgacgcgac cacgaagatc
     4441 accaagaagg tcccgctgca cttcatcaac gaggagaact cgcccgcggt gaagaccgat
     4501 gcctgcgtgg tcaaccacgt catcaacgag ctgaacatcc agtgcctggc ctcgcagctg
     4561 cccgaattcc tgaccgtgga tctcggcaac ctgaccaagg gccagtcgct ccacgtcaac
     4621 gacatcgcgc tcggtgaagg cgtcaaggtc gtgacccacg gcaaacccaa tccggtgatc
     4681 gcctcggcga ccgtccaggc cgccgaagag gaagtggtgg aggcggcccc ggtggtggtc
     4741 gccgtgccgg cagcggcccc gacaaagacc aagaagaacg agaagcagaa caagaagtaa
     4801 tcggctcacg cccctcggag ccccacttcg gtggggcttt ttttatgggc tccgcgctcg
     4861 ataatccccg catgattcga ctcctcgccg gcttgggcaa cccgggcccc gaatacgaag
     4921 ccacgcggca caacgccggc ttctggttca tcgacgaagc ggcccgaaag ctcggcgcaa
     4981 cattcctgcc cgagcgcgcc tattcgggtc gggtcgcgcg catcaatcgc ccggccgggc
     5041 cgctgtggct tctgcagccg atgaccttca tgaacctgtc gggaaaatcg gtggcggcgc
     5101 tggcgcgctt cttcaagatc gcgccggagg aaatcatgat cgcgcacgac gagctcgacc
     5161 tgatgcccgg ccaggccaag ctcaagctcg gcggcagcgc cgccggccac aacggcctga
     5221 aagacgtcga ggcccagctc ggaagcgccg acttctggcg cctgcgcctg ggcatcggcc
     5281 atcccggcgt gaaggccgag gtcgtcaact acgtgctgcg caagcccgcg cccgagcagc
     5341 gcgaggcgat cgaaaagagc atcgagcaat cgatcgccgc gctcgatctc gtgctcgccg
     5401 gcgacatgga ccgcgcgatg atgaagatcc acgccaagcc gccccggccc aaaccggtcg
     5461 ccgccgaggc gcccaaggtt tcgatctcgc ccggcaacgc ttcttcggag ggttcgtcat
     5521 gaaattcgcc gctctcggcc tggccatcgc ggcgggtgtc ggctgcctgg cgggaagcgc
     5581 cgctgcccag accatctacc gctgcggcaa cgaatacacg cgcatcccgt gtccgaatgg
     5641 tcatccgctc gaatcgaccg atccacgcac tgccgcgcaa cacgccgagg cgaggcggct
     5701 cgtggccgat gaaaagcgcc aggccgccga catggcgcgc gaacggcgcc gcgacgaagc
     5761 cgcactcaag ccaacgctgg cctcgagcct cggtccggtg ccggcccccg cggccgcggc
     5821 ttcggcaccg aaaaatgcgg tgcaaaagaa gcgccatcgc aaggttcaga tcgacgacga
     5881 gcgcgatttc gtcgccgcgg tacccggcac cgggaagaag aaatcggcaa gccgctgatc
     5941 gccattccgc gagagcgcgt cctctctcag ccggcggccg aggtcggctc gccttcggcc
     6001 gcagcggccg cgacgccggc ctcgcgttgc aggagccggt acctcaccca gagcgacgcc
     6061 tgcgtctcca cgtgcgccgg gtcgaccgga atgcaattca cagggcacac ctgcacgcat
     6121 tgcggctcgt cgaaatggcc gacgcactcg gtgcagcggg aaggatcgat gcggtagatc
     6181 tccggcccca tcgagatcgc ctggttcggg cactcgggct cgcacacatc gcagttgatg
     6241 cattcatccg tgatgaggag cgccatgatc aggcctagtc ggccttgacg cgcaggcgca
     6301 aacggtcgag caccagcggc gacacgaact tggagacatc gcctcccaac atggcgatct
     6361 cgcgcacgaa cgtgccggag acgaactgat actggtcgct cggcgtcagg aagacggtct
     6421 cgacctcggg catcaactgc cgattcatgc ccgccatctg gaactcgtac tcgaagtcgc
     6481 tcacggcgcg caggccgcgc accacgacct tgccgc
//
LOCUS       DASVHM010000140         2991 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_659289, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000140 DASVHM010000000
VERSION     DASVHM010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2991
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659289"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /gene="eno"
                     /locus_tag="VF308_02730"
     CDS             <1..406
                     /gene="eno"
                     /locus_tag="VF308_02730"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011001079.1"
                     /note="catalyzes the formation of phosphoenolpyruvate from
                     2-phospho-D-glycerate in glycolysis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEX7435597.1"
                     /translation="DGWKHLCERLGSKVQLVGDDIFVTNTKILKVGIEMRVANSVLIK
                     INQIGTLTETFAAIEMAKRAGWTAVISHRSGETEDSTIADIAVGSNAGQIKTGSMSRS
                     DRIAKYNQLLRIEEDLGDVASYPGRAAFYSLR"
     gene            418..696
                     /gene="ftsB"
                     /locus_tag="VF308_02735"
     CDS             418..696
                     /gene="ftsB"
                     /locus_tag="VF308_02735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HEX7435598.1"
                     /translation="MRFVTLALIALLALVHAELWFGKGGVPRMTELSGKLRAQNAANE
                     AARQRNEQMAAEVRDLKEGLEMVEEKARYELGMIKPDEILVQVSTPRR"
     gene            716..1357
                     /gene="pnuC"
                     /locus_tag="VF308_02740"
     CDS             716..1357
                     /gene="pnuC"
                     /locus_tag="VF308_02740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015663 - nicotinamide mononucleotide
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015890 - nicotinamide mononucleotide
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HEX7435599.1"
                     /translation="MTDLLAGLQPLFGSVFTLWAAPVSWLELVAFVLALATVTMNIRV
                     NPMGWPLAIVSSLLYFGLFWNSRLYGDASLQIFFALVAVWGWWQWLRGTQADGRPLEV
                     RSLESHGRWLALVVLAFAWPMTGLFLRAYTDTDVPWWAAFPTAASVIGQWLLGRKYIE
                     NWPAWLIVNIVSVALFAYKGLWLTVILYAVFIVMSVAGWRAWRSRLPEAGVVA"
     gene            1354..1989
                     /locus_tag="VF308_02745"
     CDS             1354..1989
                     /locus_tag="VF308_02745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX7435600.1"
                     /translation="MTARGFVIALLGAESTGKTTLARQLHAALVAEGRDAVVVGETLR
                     EFCADRRRTPERDEQHAIAAEQTRRIDAASARHAIVVADTTALMIAVYSDQVFDDMSL
                     YVQADAAHERCQVTLLTALDLPWQADGQQRDGPHVREPVDAKIRAALVRSGVAFSVVS
                     GAGPARLAAALVSVHRALDPPRADAGTPRWQWVCEHCGDSACERHLLPRAQ"
     gene            complement(2012..2488)
                     /locus_tag="VF308_02750"
     CDS             complement(2012..2488)
                     /locus_tag="VF308_02750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011463521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HEX7435601.1"
                     /translation="MGYAILKSIHLLGIVVWVGGMFFALACLRPAAATLEPGVRVGLM
                     RDALGRFLQIVMVAAGLVLLSGAWMIATASRVSVNAGIGFNMPLDWLVMIALGVAMIA
                     IYAYIGLAVFRQLERAAAAREWPAAGAALSRIRVLVLVNLVLAVIIIVVTRLGAAG"
     gene            2659..>2991
                     /locus_tag="VF308_02755"
     CDS             2659..>2991
                     /locus_tag="VF308_02755"
                     /inference="COORDINATES: protein motif:HMM:NF024183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEX7435602.1"
                     /translation="MAKICSTCQADNRDEAQFCRACGTPFAAAAPVHDAGPSAGITCA
                     DCGFVNKPGLRYCAKCGVNLMGTVVVPRSKQQVPAAPPVPAYSAPTHAQSDYPPPFDP
                     VTVPDVPDP"
BASE COUNT          486 a         1043 c         1000 g          462 t
ORIGIN      
        1 ggacggctgg aagcacctct gcgagcggct cggttcgaag gtgcaattgg tcggcgacga
       61 catcttcgtc accaacacga agatcctcaa ggtagggatc gaaatgcgcg tcgccaattc
      121 ggtgctgatc aagatcaacc agatcggcac gttgacggag accttcgcgg cgatcgagat
      181 ggccaagcgc gccggctgga ccgcggtgat cagccaccgc tcgggcgaga ccgaagactc
      241 gacgatcgcc gacatcgcgg tcggcagcaa cgccggccag atcaagaccg gctcgatgtc
      301 gcgctcggac cgcatcgcca agtacaacca gctgctgcgc atcgaggaag acctcggcga
      361 cgtcgccagc tatccgggcc gcgcagcctt ctacagcctg cgctgagacg accggcgatg
      421 cgcttcgtca ccctcgccct gatcgcgctg ctggcgctgg tgcatgccga gctctggttc
      481 ggcaagggag gcgtgccgcg catgacggag ttgagcggca agctgcgcgc gcagaacgcg
      541 gccaacgagg ccgcgcgcca gcgcaacgag cagatggcgg ccgaggtgcg cgatctgaag
      601 gaagggctcg aaatggtcga ggagaaggcg cgctacgagc tcggcatgat caagcccgac
      661 gagatactcg tccaggtttc gacgccgcgg cgctgagccg cggccgcatt tcccgatgac
      721 cgacctgctg gccgggctgc agccactgtt cggcagcgta ttcacgctct gggccgcgcc
      781 ggtcagctgg ctcgaattgg tcgccttcgt gctggcgctg gcgacggtga cgatgaacat
      841 tcgcgtcaat ccgatgggct ggccgctcgc catcgtcagc tcgctgctct acttcggcct
      901 cttctggaac agccggctct acggcgacgc gagcctgcag atcttcttcg cgctggtggc
      961 cgtgtggggc tggtggcagt ggctgcgcgg cacgcaggcc gacggccggc ccctcgaagt
     1021 gcgcagcctc gagtcgcatg gccgctggct ggcgctggtc gtgcttgcgt tcgcgtggcc
     1081 catgacgggt ctcttcctgc gcgcttacac cgacaccgac gtgccctggt gggccgcgtt
     1141 tccgaccgcc gccagcgtca tcgggcaatg gctgctcggg cgcaagtaca tcgaaaactg
     1201 gccggcctgg ctcatcgtca acatcgtcag cgttgcgctc ttcgcctaca agggcctgtg
     1261 gctcacggtg atcctgtacg ccgtcttcat cgtcatgtcc gtggccggct ggcgcgcgtg
     1321 gcgcagccgg ttgcccgagg ccggagtcgt cgcatgacgg cgcgcggctt cgtcatcgcg
     1381 ctgctcggcg cggaaagcac cggcaagacg acactcgcgc ggcagcttca cgctgcgctc
     1441 gtcgccgagg gccgcgatgc ggtggtcgtc ggcgaaaccc tgcgcgaatt ctgcgccgac
     1501 cgccgtcgta ccccggagcg cgacgaacag cacgcgatcg cggccgagca gacccgccgc
     1561 atcgacgccg cgtcggcccg ccacgccatt gtcgtggccg acacgaccgc gttgatgatc
     1621 gcggtctaca gcgatcaggt gttcgacgac atgagcctct acgtgcaagc cgatgccgca
     1681 catgagcgct gccaagtgac gctgctcacg gcgctcgacc tgccctggca ggccgacggc
     1741 caacagcgcg acgggccgca cgtgcgcgaa cccgtcgatg cgaagattcg cgccgcgctg
     1801 gtccgttcgg gcgtggcgtt ctcggtggtg tcgggcgcgg gtccggcacg cctggccgca
     1861 gccctcgtca gcgtccatcg cgccctcgat ccacctcgcg ccgatgcggg cacgccgcgc
     1921 tggcagtggg tctgcgagca ctgcggcgat tcggcgtgcg agcgtcacct gctgccgcgt
     1981 gcgcaatgac gtgccgcggc gccgcactgc ctcagccggc agccccgagg cgcgtcacga
     2041 cgatgatgat cacggccagg acgaggttga ccagcaccag cacgcgaatg cgactcaggg
     2101 ccgcacccgc cgcgggccac tcgcgcgccg ccgccgcgcg ctcgagttgc ctgaagaccg
     2161 cgaggccgat gtaggcgtag atcgcgatca tcgcgacgcc gagcgcaatc atcacaagcc
     2221 agtcgagcgg catgttgaac ccgatgccgg cgttgaccga cacgcgcgat gcggtcgcga
     2281 tcatccacgc gccggacagc agcaccagac ccgcggcgac catcacgatc tgcaggaagc
     2341 ggccgagcgc gtcgcgcatc aggccgacgc gcacgccggg ctcgagcgtc gccgccgccg
     2401 ggcgcaggca ggcgagcgcg aagaacatgc cgccgaccca gaccacgatg ccgagcaggt
     2461 ggatcgactt caagattgca tatcccacgg tcgcgctccc ggttgagcct tcgatgctgc
     2521 gcgtgcgcgc cggctgattg tccaccggcg cgccggctcg ctcgccgtgc acaacaccgc
     2581 tgaaggatcg accgcatcgt ttgcgatccg gcacaaacca aggtatcgtc ttttggatcg
     2641 acgacgaaga gggaccggat ggcgaagatc tgctcgacct gccaggctga caaccgcgac
     2701 gaagcgcagt tttgcagggc ctgcggcact cccttcgccg ccgccgctcc ggtccacgat
     2761 gcgggcccgt cggcggggat cacctgcgcc gactgcggct tcgtcaacaa gccgggcctg
     2821 cgctattgcg ccaagtgcgg cgtcaacctg atgggcacgg tcgtcgtgcc gcgttcgaaa
     2881 caacaggtgc ccgccgcccc accggtaccc gcctattcgg cgcctaccca tgcgcagtcc
     2941 gattacccgc ccccgttcga tccggtgaca gtgccggatg tgcccgaccc t
//
LOCUS       DASVHM010000141         2598 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_948723, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000141 DASVHM010000000
VERSION     DASVHM010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2598
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_948723"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..447)
                     /locus_tag="VF308_02760"
     CDS             complement(<1..447)
                     /locus_tag="VF308_02760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEX7435603.1"
                     /translation="MEPTSWLNAGLIYLAAAVIAVPLARLLGLGSIIGYLVAGIAIGP
                     WGLKLVTDPQDMLHFAEFGVVLMLFLVGLELEPDRLWALRKPIFGWGSAQLFGSAALM
                     AALALALGVDWRLALVASFGLALSSTAIALGMLAERSLLGTTSGQSV"
     gene            complement(447..1136)
                     /locus_tag="VF308_02765"
     CDS             complement(447..1136)
                     /locus_tag="VF308_02765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013543430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEX7435604.1"
                     /translation="MAESTAAFPLVPVPASPGADVLVLVAHPQLEQSRANRRLMQAAS
                     ALQSDGGSPPRVAVRDLYALYPDYLIDVAAEQAALASARLVVWQHPIHWYGMPPLMKL
                     WVDDVLAFGWAYGPEGNALRGKDLWLVATTGGPEESYRPDSYNRYFFDAFLPPYEQTA
                     ALCGMRFLPPLMLHGAHKASAADIQAHAATYAQRLQTYPAWPEIADLPECIACEVPLG
                     TRPLKNLAESA"
     gene            1227..1868
                     /locus_tag="VF308_02770"
     CDS             1227..1868
                     /locus_tag="VF308_02770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008115777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEX7435605.1"
                     /translation="MPVIVVANPKGGVGKTTLATNLAGYFAARGEKVMLGDVDRQQSS
                     RTWLALRPAGLPRIETWEVTNDDVVRPPKGTTHVVLDTPAGIHGKRLDEVMKIADKVL
                     IPLQPSIFDIHASSDFIQQLMAHRRSERVQMAIVGMRTREGTISTDQLRNFLEGVQLP
                     LLGFLRDTQNYVHLAAHGLTLWDVASSRFERDREQWEPITNWADREIARGRAA"
     gene            1880..2332
                     /locus_tag="VF308_02775"
     CDS             1880..2332
                     /locus_tag="VF308_02775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HEX7435606.1"
                     /translation="MNSFEHLADLQALVGEEIGVSDWIIVDQKRIDQFAAATGDHQWI
                     HIDPARAAAGPFGATVAHGFLTLSLLPEMSASAFQVRDTRMGVNYGLNRVRFPAPVPS
                     GSRLRGHFKLLSYEPIEGGAQVTVEVTMEREGSSKPVCVAESVARRFV"
     gene            complement(2366..>2598)
                     /locus_tag="VF308_02780"
     CDS             complement(2366..>2598)
                     /locus_tag="VF308_02780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435607.1"
                     /translation="LDIQMPVKSGAEIAAETRAGNGPNRETRLLGMSAAEVTAQYTDG
                     SFDACLTKPIDRNALVSALRDEWPETWPSSTI"
BASE COUNT          439 a          830 c          950 g          379 t
ORIGIN      
        1 gacgctctga cccgaggtcg tgccaagcag gctgcgctcg gccagcatgc cgagcgcgat
       61 cgccgtggat gacagggcga gcccgaacga cgccacgagc gcgagtcgcc agtcgacgcc
      121 caaggcgagg gcgagggccg ccatcagtgc agcggagccg aacagctgcg cgctgcccca
      181 gccgaagatg ggcttgcgca gggcccagag ccggtcgggc tcgagttcga ggccgaccag
      241 gaacagcatc agcacgacac cgaattcggc gaagtgcaac atgtcctgcg gatcggtcac
      301 gagcttcagg ccccagggcc cgatggcgat gccggcgacg aggtagccga tgatcgatcc
      361 gaggccgagg agccgcgcga gcggcacggc gatgaccgcg gccgcgagat agatgaggcc
      421 ggcgttgagc caggaggtcg gttccatcag gcgctttcgg ccaggttttt gagaggacgc
      481 gtgccgagcg gcacctcgca ggcgatgcac tcgggcaggt cggcgatctc cggccaggcg
      541 gggtaggtct ggaggcgctg cgcgtatgtc gcggcatggg cctggatatc cgccgcgctc
      601 gccttgtggg cgccatgcag catcagcggg ggcaggaagc gcatgccgca gagcgccgcg
      661 gtctgttcgt agggcggcag gaaggcgtcg aagaaatagc ggttgtagct gtcgggccga
      721 tacgattctt cgggcccgcc ggtggtcgcg acaagccaga gatccttgcc gcgcagcgcg
      781 ttgccctcgg gaccgtaggc ccagccgaag gccagcacgt cgtcgaccca gagcttcatc
      841 agcggcggca tgccgtacca gtggatcggg tgctgccaga ccacgagccg tgcgctggcg
      901 agcgcggcct gctcggcggc gacgtcgatc aagtagtcgg ggtagagcgc atagaggtcg
      961 cggaccgcga ccctcggggg cgagcccccg tccgactgca aggccgacgc ggcctgcatc
     1021 aggcggcggt tggcccgcga ctgctcgagc tgcgggtggg cgacgaggac cagcacgtcg
     1081 gcgcccggcg aggcgggcac gggcacgagc gggaaggcag cggtcgattc ggccatgggc
     1141 aggtcgctgg ttagtctcga tggcgggcgc aaggcgggcg ccgctaacat aaccgcaaac
     1201 gccgaagggc gaaggggagg gtgcgcatgc cggtgatcgt ggtggccaat ccgaagggcg
     1261 gcgtgggcaa gaccacgctc gcgaccaacc tcgccggcta cttcgcggcg cgcggcgaaa
     1321 aggtcatgct cggcgacgtc gaccggcagc aatcgtcgcg cacctggctc gcgttgcgac
     1381 cggcgggctt gccgcgcatc gagacctggg aagtcacgaa cgacgacgtc gtgcggccgc
     1441 cgaagggcac gacccacgtc gtgctggaca cgccggccgg cattcacggc aagcgcctgg
     1501 acgaggtgat gaagatcgcc gacaaggtgc tcattccgct gcagccgagc atcttcgaca
     1561 ttcatgcgtc gagcgatttc atccagcagc tgatggcgca tcggcgcagc gagcgggtgc
     1621 agatggccat cgtcggcatg cgcacccgcg aaggcaccat ttccaccgat cagctgcgca
     1681 actttctcga aggcgtgcag ctgccgctgc tcggcttcct gcgcgacacg cagaactatg
     1741 tgcacctggc ggcccacggc ctgacgctct gggacgtggc gtcgagccgc ttcgagcgcg
     1801 accgggaaca gtgggagccg atcacgaact gggccgaccg cgaaatcgcc cgcggccggg
     1861 ccgcctgagg aatcccctca tgaatagctt cgagcatctc gccgacctgc aggccctggt
     1921 gggcgaggag atcggcgtca gcgactggat catcgtcgac cagaaacgca tcgaccagtt
     1981 cgccgccgcc accggggatc accaatggat ccacatcgac ccggcgcgag ccgccgcggg
     2041 gccattcggc gcgacggtcg cgcacggctt cctgaccctg tcgctgctgc ctgagatgag
     2101 cgcctcggcc ttccaggtac gtgacacgcg catgggcgtg aactacgggc tcaaccgggt
     2161 gcgctttccg gcgccggtgc cctcgggcag ccggctgcgc gggcacttca agctgctcag
     2221 ctacgagccg atcgaagggg gcgcgcaggt gacggtcgaa gtgacgatgg agcgcgaggg
     2281 gtcctccaag ccggtgtgcg tggcggaatc ggtggcgcgg cggtttgtgt gagagcgggc
     2341 atggtgacgc gccgctcacg ccgcttcaga tcgtgctcga cggccaggtt tcgggccatt
     2401 cgtcgcgcag cgcgctgacc agggcattgc gatcgatcgg tttcgtcagg caggcatcga
     2461 atgacccgtc ggtgtattga gcggtgactt cggcggcgct cattcccagg agtcgagtct
     2521 ctcgattcgg accgttgccg gcgcgcgtct cggcagcgat ctcggccccg ctcttgaccg
     2581 gcatctggat gtcgagca
//
LOCUS       DASVHM010000142         3618 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_659392, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000142 DASVHM010000000
VERSION     DASVHM010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3618
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659392"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..763)
                     /locus_tag="VF308_02785"
     CDS             complement(128..763)
                     /locus_tag="VF308_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX7435608.1"
                     /translation="MIKVLLCDDHALIRRGIRDTLSDAPDIEVVGEAGDYGELRTLMR
                     DKTADVLVLDINLPGRSGLDVLHVLKDEGTTMRVLVVSMYPEDQYAIRALRAGAYGYV
                     NKGGDPAQIVNAVRIVAQGRKYVTPEIAQMLVESLTAPAVENPHDKLSDREMQTLVMI
                     ASGKRLSDIAEELMLSPKTVSVYRARVLEKLGLTNNSEMTVYAIRSGLVGN"
     gene            complement(789..1928)
                     /locus_tag="VF308_02790"
     CDS             complement(789..1928)
                     /locus_tag="VF308_02790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX7435609.1"
                     /translation="MAIPLKERTLRVLHLEDSELDHELALAHLARGGLHVEALRIDSE
                     VEFLGALDQDWDAVISDYNLPGFSGLVALELLKARAHDVPFILVSGEIGEDTAVEAMR
                     NGASDYLQKAHLARLVPALLHAVDAAETRRARVIADRQLLESKQRLRELAQHLQTSVE
                     HERASIAREIHDDVGGSLTALKFDLAWIARHSSTPEVKARVSSALETVSHAVESSQRI
                     MHNLRPAILEQGLLPALHWIAMRFERRTGIESEIRLPRSVPELPAGVPLVAYRAAQEA
                     LTNITKHAQATRVQIDLSLAGGVLSLEISDNGRGLSQEDLAKTRSFGIRGLHERAGTV
                     GGWVDLSSGPHGTTLILSVPLNLPEGAVLDPEPDRSYDPSQWGDV"
     gene            complement(1994..>3618)
                     /locus_tag="VF308_02795"
     CDS             complement(1994..>3618)
                     /locus_tag="VF308_02795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007839234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX7435610.1"
                     /translation="RVLGLAQRTIALQYLIGFGLVGLLSSVAGVVLGFCVHFVFVWLL
                     AGLVNAALPAPTVWPALFGLGVGFTLLMGFGLPPVLQLARVPPLRVIRRDVGALKPAS
                     IAVLAAGALGFVALLLAVSSDLKLGLIAVGGFAAAIALFAVLSWLAVIVLRRAVPESR
                     APRWLVLATRQIAARPAFAVLQVSALSVGLLALVLLVLLRTDLIDSWRKATPKDAPNR
                     FVINVQPDQGDAFRQRLRDSGVAQFDWFPMIRGRLVAINGSAVKPEDLAEERARRLVD
                     REFNLSHSAALPPHNQVSRGRWQDNEPNALSVEEGLAQTLGLKLGDTLRFDMGGSAAE
                     GRITSLRKVDWSSMRVNFFVMFPTATMVDAPVSYIAAYRAPAQPGFDNALARDFPNIT
                     SIDVSASIAQIQGVLDQVIQAVEFLFGFTLAAGLVVLFAAVTATREARSREFAVMRAL
                     GASGKLLAQVQRAELLGVGALAGVLASLAAIAVGWALAHYVFEFTWNPSPLVPLAGGA
                     TGALLALGAGWWGLREVLRRPVVETLRQAAEV"
BASE COUNT          602 a         1244 c         1262 g          510 t
ORIGIN      
        1 gccaggctag cgaggcacag cagagcgccg gagaggaaga gacggatcga aggcatagcc
       61 gggatcttag cgagcaccgg gacgccttcc agagcgccag cgacaaagca caggtgacca
      121 accgccttca gttgccgacc agcccgctgc gaattgcgta gaccgtcatc tccgagttgt
      181 tcgtcaaccc gagcttctcg agcacgcggg cgcgatagac gctgacggtc ttcggactca
      241 gcatcagttc ctcggcgatg tcggaaaggc gcttgcccga ggcgatcatc acgagcgtct
      301 gcatctcgcg gtcggagagc ttgtcgtgcg ggttctcgac cgccggcgcg gtcaggctct
      361 cgaccagcat ctgcgcgatt tccggcgtca cgtacttgcg gccctgggcg acgatgcgca
      421 ccgcgttgac gatctgcgcc gggtcgccgc ccttgttgac gtagccgtag gcgccggccc
      481 gcagcgcgcg gatggcgtac tggtcttcgg ggtacatcga aaccacgagc acgcgcatcg
      541 tcgtgccctc gtccttgagc acatggagca cgtcgagacc gctgcggccg ggcaggttga
      601 tgtcgagcac cagcacgtcg gcggtcttgt cgcgcatcag cgtgcgcagc tcgccgtagt
      661 cgccggcctc gccgacgacc tcgatgtccg gcgcatccga gagggtgtcg cgaatgccgc
      721 gccggatcag cgcgtggtcg tcgcacagaa gaaccttgat catggctgcc ccggatgttg
      781 agcggtactc agacgtcgcc ccactggctc gggtcgtacg aacggtccgg ctcggggtcg
      841 aggaccgccc cctccggcag attcagcggc accgatagga tcagcgtcgt gccatgcggg
      901 ccgctgctca ggtcgaccca gccgccgacc gtgccggcgc gttcgtgcag gccgcgaatg
      961 ccgaaggagc gcgtcttcgc gaggtcttcc tggctcaggc cgcgcccgtt gtcgctgatc
     1021 tcgagcgaga gcacgccgcc ggccagcgac aggtcgatct gcacccgggt cgcctgggcg
     1081 tgcttggtga tgttggtcaa tgcctcctgg gccgctcggt aagcgacgag cggcacgcct
     1141 gccggcagct cgggaacgct gcgcggcaga cggatttcgg attcgatccc ggtgcgtcgc
     1201 tcgaagcgca tggcgatcca gtgcagcgcc ggcagcaggc cctgctcgag gatggccggg
     1261 cgcaggttgt gcatgatgcg ctggctcgat tcgaccgcat gcgaaacggt ctcgagggcc
     1321 gagctgacgc gcgccttgac ctcgggcgtg ctcgagtggc gggcgatcca ggccaggtcg
     1381 aacttcaacg ccgtcagcga gccgccgacg tcgtcgtgga tctcgcgcgc aatcgacgcg
     1441 cgctcgtgct cgacgctggt ctgcaggtgc tgcgcgagct cgcgcaggcg ctgcttggac
     1501 tcgagcagct ggcggtcggc gatgacccgg gcgcggcgcg tctcggccgc gtcgaccgcg
     1561 tgcagcagcg ccggcacgag ccgcgccagg tgtgccttct gcaggtagtc gctcgcgccg
     1621 ttgcgcatcg cctcgacggc agtgtcctcg ccgatctcgc ccgacaccag gatgaacggc
     1681 acatcgtggg cacgcgcctt cagcagctcg agggcgacga gacccgagaa cccgggcagg
     1741 ttgtagtcgg aaatcaccgc gtcccagtct tgatcgagcg cgccgaggaa ctcgacctcg
     1801 gaatcgatgc gcagcgcctc gacatgaagc ccgccgcgcg cgagatgggc aagcgccagt
     1861 tcatggtcga gttcggaatc ctcgaggtgc agcacccgaa gtgtccgttc tttgagcgga
     1921 atcgccatgg cccggagtat gccttcagcg cgccgcgtcg cgaccgcgga cgcgcggccc
     1981 gaatcgcggc tggctagacc tcggcggcct ggcgcagcgt ttcgacgacc gggcgccgca
     2041 gcacttcgcg cagcccccac cagccggcgc cgagcgcgag cagcgcgccg gtcgcgccgc
     2101 cggcgagcgg caccagcggc gagggattcc aggtgaactc gaatacgtag tgggcgagcg
     2161 cccagccgac cgcgatcgcg gcgagcgatg cgaggacgcc ggccaacgca ccgacgccga
     2221 gcagctcggc gcgctgcacc tgggcgagga gcttgccgct cgcaccgagc gcgcgcatca
     2281 ccgcgaattc gcgcgagcgc gcctcgcggg tcgcggtcac cgcggcgaac agcacgacga
     2341 ggccggccgc gagggtgaaa ccgaacagga actcgaccgc ctggatgacc tggtcgagca
     2401 cgccctggat ctgcgcgatc gacgccgaga cgtcgatgct cgtgatgttc ggaaagtcac
     2461 gggccagggc attgtcgaag ccgggctgtg ccggcgcacg gtacgccgcg atgtagctga
     2521 ccggcgcgtc gaccatcgtc gcggtcggaa acatgacgaa gaaattgacc cgcatcgaac
     2581 tccagtcgac cttgcgcagg ctcgtgatgc gaccctcggc ggcgctgccg cccatgtcga
     2641 agcgcaaggt gtcgccgagc ttcaggccga gggtctgcgc cagcccttcc tcgacgctca
     2701 atgcgttcgg ctcgttgtcc tgccagcgcc cgcggctcac ctggttgtgc ggcggcagcg
     2761 ccgcgctgtg gctcaggttg aactcgcggt cgacgaggcg cctggcgcgt tcctcggcca
     2821 ggtcctccgg cttgaccgcg ctgccgttga tcgcgacgag ccggccgcgg atcatcggga
     2881 accagtcgaa ctgcgcaacg ccggaatcgc gcaggcgctg ccggaacgcg tcgccctgat
     2941 ctggctgcac gttgatgacg aaacggttcg gcgcatcctt cggcgtggcc ttgcgccagc
     3001 tgtcgatcag gtcggtgcgc agcagcacca gcaacaccag cgcgagcagc ccgacgctga
     3061 gcgccgagac ctgcagcacc gcgaaggccg gtcgcgccgc gatctggcgc gtcgccagca
     3121 cgagccagcg cggcgccctt gattccggaa ctgcgcggcg caacacgatc accgcgagcc
     3181 aggacagcac cgcgaacagc gcgatcgccg cggcgaaccc gccgaccgcg atcaggccga
     3241 gcttcaggtc gctcgagacc gcgagcagca acgcgacgaa accgagcgcg cccgccgcga
     3301 gcacggcgat cgaggccggc ttcagcgcac cgacatcgcg gcggatcacg cgcagcggcg
     3361 gcacgcgcgc gagctgcagc accggcggca ggccgaaacc catcaacagc gtgaagccga
     3421 cgccgaggcc gaagagcgcc ggccagacgg tcggcgcggg cagcgccgca ttgacgaggc
     3481 cggcgagcag ccagacgaac acgaagtgca cgcaaaagcc gagtaccacg ccggcgacgc
     3541 tcgacaggag tccgaccagg ccgaatccga tcaggtactg cagcgcgatg gtccgttgcg
     3601 ccaggccgag gacgcgca
//
LOCUS       DASVHM010000143         3538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_731881, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000143 DASVHM010000000
VERSION     DASVHM010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3538
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_731881"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2081)
                     /locus_tag="VF308_02800"
     CDS             complement(<1..2081)
                     /locus_tag="VF308_02800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX7435611.1"
                     /translation="MKALDRKLLRDLRLMWSQALTIALVVASGIGGFITSLSAVDSLA
                     LARDRFYADGRFADLFAGVKRAPNSLADVLRDVPGVADVQTTLEEIVRVEIPGLPDPI
                     IGQLIGMDRRNPHRMNRVTVSGGQALDGTPGMRSDGSIEALVSEGFAQTHRLKPGSRL
                     EALINGKKRTLVVAGSALSPEFIFAGLWGMPDTRGYGIFWIDRDVLGAAYDMQGAFNR
                     VAVKLAPGASEQAAIDGISRLLARYGGREAHGRTEQTSHAMLDNEIKEQRVLGTVLPA
                     IFLGVAAFLLNVVVSRLVSTQREQIAALKALGYPNRTIAAHYLKLVLLIVALGFVLGV
                     VVGDRLGTMFTGLYAEFFHFPTFEHRIAPWLLVTSGGITVATAVVGTLNAILATVRLP
                     PAEAMRPPAPGRYRRTLLERLGIRRMAPALRMIVRNMERRPLRTGLSMGGVAAAVAIV
                     IMGNFIRDAIEVVVDTQLRLGLRGDVTVWTADPVDDGVRHEFARLPGVTMVEATRFVP
                     VTFVNGHRRERSMIRGYAARPELYRVIDVERRETLLDGRGLVLTDRLADKLGLRVGDS
                     VRIEVLEGRERTLEMRVGATVREMMGLNAYMDRRALNRALGDGDVSTGYVLAVERGGE
                     DRVLEASKALPRAAGAWSKATMLRNMEEISARNVRIMSTILTVFASVIAVGVVYNNAR
                     IALAERAWELA"
     gene            complement(2078..2800)
                     /locus_tag="VF308_02805"
     CDS             complement(2078..2800)
                     /locus_tag="VF308_02805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435612.1"
                     /translation="MDPVAATEIVFRARGLAKTYRTGEVEVHALRDVDLDITRGEFIV
                     LLGPSGSGKSTLLNILGGLDVPSAGKVVFGGQDLTAATESELTAYRRRHVGFVFQFYN
                     LIPSLTVRENVALVTDIVEQPMSVDEAIDRVGLTPRRDHFPAQLSGGEQQRVAIARAI
                     VKRPAVLLCDEPTGALDYQTGKLVLEVIARINEELGTTAVVITHNAAIAGMADRVVYL
                     GDGSIQRIETNSHKLKPSELSW"
     gene            complement(2936..3457)
                     /locus_tag="VF308_02810"
     CDS             complement(2936..3457)
                     /locus_tag="VF308_02810"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX7435613.1"
                     /translation="MSLARICQRAFVTIDASATLRDVATLMQAQQVGALVVTVEAGGR
                     RQAVGVLTDRDLVIEVLARDLDPAEVKAGQLARHPLAAMPGTAGIAEAVAVMRETGVR
                     RLLVTEPEGQIAGVVSADDLLEALAQDVGGFAVALRGGSAREGAERPSIPPPRPVFLP
                     HGTPGMQQSIAAE"
BASE COUNT          538 a         1213 c         1259 g          528 t
ORIGIN      
        1 ctggcgagtt cccaggcgcg ctcggccagg gcgatgcggg cgttgttgta gaccacgccg
       61 accgcgatga cgctcgcgaa cacggtgagg atggtgctca tgatgcgcac gttgcgcgcg
      121 ctgatctcct ccatgttgcg cagcatcgtc gccttgctcc aggcgccggc cgcgcgcggc
      181 agggccttgc tcgcctccag cacccggtct tcgccgccgc gctcgaccgc gagcacgtag
      241 ccggtggaga catcgccgtc gccgagcgcg cggttgaggg cgcgccggtc catgtaggcg
      301 ttgaggccca tcatctcgcg cacggtcgcg ccgacccgca tctcgagggt gcgttcacgg
      361 ccttcgagca cttcgatgcg cacgctgtcg ccgacgcgca ggcccagctt gtcggcgagg
      421 cgatccgtca gcaccaggcc gcggccgtcg agcagcgtct cgcgccgctc gacgtcgatc
      481 acgcggtaga gctcggggcg cgccgcatag ccgcggatca tgctgcgctc gcgccggtgg
      541 ccgttgacga acgtgaccgg cacgaagcgc gtcgcctcga ccatcgtcac gccgggaagg
      601 cgcgcgaatt cgtggcgcac gccgtcgtcg accgggtcgg ccgtccagac ggtcacgtcg
      661 ccgcgcaggc cgaggcgcaa ttgggtgtcg acgacgacct cgatcgcgtc gcgaatgaag
      721 ttgcccatga tgacgatggc gaccgcggcc gccacgccgc ccatcgacag gccggtgcgc
      781 aacggccgcc gctccatgtt gcgcacgatc atgcgcagcg ccggcgccat gcgccggatg
      841 cccaagcgct ccagcagggt gcgccggtag cgaccgggag cgggcggacg catcgcttcg
      901 gcgggcggca gccgcacggt ggcgaggatc gcattcaggg tgccgaccac ggctgtggcg
      961 accgtgatgc cgccgctcgt gaccagcagc cacggcgcga tgcggtgttc gaaggtcggg
     1021 aagtggaaga actcggcgta gaggccggtg aacatcgtgc cgagccggtc gccgacgacg
     1081 acgccgagca cgaacccgag cgcgacgatc agcagcacga gtttcaggta gtgcgcggcg
     1141 atggtgcggt tcgggtagcc gagcgctttc agggcggcga tctgctcgcg ctgcgtcgag
     1201 accagccgcg acacgaccac gttgaggagg aatgccgcca cgccgaggaa gatcgcgggc
     1261 agcaccgtgc cgagcacgcg ctgctccttg atctcgttgt cgagcatcgc gtgcgaggtc
     1321 tgctcggtgc ggccgtgcgc ctcgcgcccg ccgtagcggg cgagcaaccg cgagatgccg
     1381 tcgatcgccg cctgctccga tgcgcccggc gccagcttca ccgccacgcg gttgaaggcg
     1441 ccctgcatgt cgtaggccgc accgagcacg tcgcggtcga tccagaagat gccgtagccg
     1501 cgcgtatccg gcatgcccca gaggcccgcg aagatgaatt cgggcgagag ggcgctgccg
     1561 gcgacgacga gcgtgcgctt cttgccattg atgagcgcct cgagccgaga tcccggcttc
     1621 aaccggtgcg tctgcgcgaa gccttcggac accagcgcct cgatgctgcc gtcggagcgc
     1681 atgccgggcg ttccgtcgag cgcctggccg ccgctcaccg tcacgcggtt catgcggtgc
     1741 gggttgcgcc ggtccatgcc gatcagctgg ccgatgatcg ggtcgggcaa gccgggaatc
     1801 tcgacccgaa cgatctcttc cagcgtcgtc tgcacatcgg ccacgcccgg cacatcgcgc
     1861 aggacgtcgg cgagcgaatt cggggcgcgc ttgacgccgg cgaagaggtc ggcaaagcgg
     1921 ccgtcggcat agaagcggtc gcgtgccagg gcgagcgaat cgaccgccga caggctcgtg
     1981 atgaagccgc cgatgccgct cgcgacgacg agcgcgatcg tcagcgcctg gctccacatc
     2041 aggcgcaggt cgcgcaggag cttgcgatcg agggctttca ccaggagagc tccgatggct
     2101 tgagcttgtg cgagttcgtc tcgatgcgct ggatgcttcc gtcaccgaga tacacgacgc
     2161 ggtccgccat gcccgcgatc gccgcgttgt gggtgatgac gaccgcggtc gtgccgagct
     2221 cttcgttgat gcgggcgatg acctcgagca ccagcttgcc ggtctggtag tcgagcgcgc
     2281 cggtcggctc gtcgcacagc agcaccgccg ggcgcttgac gatcgcgcgg gcgatcgcga
     2341 cgcgttgctg ttcgccgccc gagagctgtg ccgggaaatg atcgcgccgc ggcgtcagcc
     2401 cgacgcggtc gatcgcctcg tccaccgaca tgggttgctc gacgatgtcg gtgaccaggg
     2461 cgacgttctc gcgcaccgtc aggctcggaa tgaggttgta gaactggaac acgaagccga
     2521 catggcgacg acggtaggcg gtgagttccg attcggtggc ggcagtgagg tcctgcccgc
     2581 cgaacacgac ctttccggca ctcggcacgt cgagcccgcc gaggatgttc agcaaggtcg
     2641 acttgccgct gcccgaaggc cccagcagca cgatgaattc gccccgcgtg atgtcgagat
     2701 cgacgtcgcg caaggcatgg acttcgacct cgccggtacg gtaggtcttg gcaaggccgc
     2761 gggcgcgaaa aacgatctcg gtggcggcaa cggggtccat gcgaacaaag ccctcggttc
     2821 acgacccgcc ggcggggtca gcgcttcgcg agtgcttccg tcaggatcgc accagcgctc
     2881 aatttcagcg ccggccagag cgtcctcgca gcccacgccc gcctcgcccg cctgttcatt
     2941 cagcggcgat cgactgctgc atgccgggcg tgccgtgggg caggaagacg ggccgcgggg
     3001 gcgggattga cgggcgctcg gcgccttcgc gcgcgctgcc gccgcgcagg gcgactgcga
     3061 atccgcccac atcttgggcg agcgcctcca gcagatcgtc ggccgagacg accccggcga
     3121 tctgcccctc tggttcggtg acgagcaggc gacgcacgcc ggtctcgcgc atcaccgcca
     3181 cggcctccgc aatgccggcg gtcccgggca tcgcggcgag ggggtggcgg gccagctggc
     3241 ccgccttgac ctcggccgga tcgaggtcgc gggcgaggac ttcgatcacc aggtcgcggt
     3301 cggtgagcac gcccaccgcc tgccggcgac cgccagcctc gaccgtcaca accagcgcgc
     3361 cgacctgttg cgcctgcatc aaggtggcga catcgcgcag cgtggcgctt gcgtcgatcg
     3421 tgacgaacgc acgctggcaa attcgggcaa ggctcatggc ggctccggcg ctgagcggcc
     3481 tacggggcgc gccggcgact ggcgcgatcc agcgcatgtt cgcaggccgt ctggcacg
//
LOCUS       DASVHM010000144         3288 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_443128, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000144 DASVHM010000000
VERSION     DASVHM010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3288
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443128"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1103)
                     /locus_tag="VF308_02815"
     CDS             complement(<1..1103)
                     /locus_tag="VF308_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019655078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX7435614.1"
                     /translation="MSTYERLDRWIDAHFDEEVRFLQALVQIPTDTPPGNNAPHAERT
                     AELLQGFGFDAERHPVPAAAAKAYGLESLTNLIVRRRYGPGPTIALNAHGDVVPPGEG
                     WTHDPYGGEVAEGKLYGRAAAVSKSDFATYSFAVRALESLAVPLKGAVELHFTYDEEF
                     GGELGPGWLLEQGLTRPDLLLAAGFSYQVVIAHNGCLQMEVTVLGRMAHAAIPSTGID
                     ALQGAVAILNALYRQNDLYREVTSKVEGITHPYLNVGRIEGGTNTNVVPGKVVFKLDR
                     RMIPEESPAEVEASIRTVIAAAAAEVPGVQVEIRRILRANALQPLPGNKPLVEALQRH
                     GETVFGVPIPTSGSPLYTDVRLYGEAGVPAAIYG"
     gene            complement(1116..2903)
                     /gene="uraD"
                     /locus_tag="VF308_02820"
     CDS             complement(1116..2903)
                     /gene="uraD"
                     /locus_tag="VF308_02820"
                     /EC_number="4.1.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013519913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
                     decarboxylase"
                     /protein_id="HEX7435615.1"
                     /translation="MVPTLTLDRLSAVPQDEFTALLDGTYEQSPWIAEQAWSARPFAS
                     LAQLKRALVEVVRGAGREAQIALVRAHPELAGKAMMSKSLTAESTNEQGKAGLTDCTP
                     EEFAHIEQLNAAYNAKFGWPFVLAVRGPRGLGLSRQQIIAAFERRLAHHRDFELAECL
                     RNIHRIAEIRLDDSFGVTPERGNLVWDWAERLAQHSEPGYAESGQLTVTYLTDAHRAC
                     AQRLAHWMRDDCGFDDVSIDAVGNVVGLYHGTDRGARRLLTGSHFDTVRNGGKYDGRL
                     GILAPMACVRDLSRAGRRLPFDFEVVGFAEEEGQRYKATFLGSGALVGQFDPAWLDQH
                     DADGITMRDAMQRAGLCIDDIPKIRRDPAKYLGFVELHIEQGPVLNELDLPLGVVTSI
                     NGGVRYAGSVTGMASHAGTTPMDRRRDAATAVAELALYVEERAAREPNLVGTMGMLAV
                     PNGSTNVVPGRCEFTLDIRATTDPVRDTCARDVLARLQAICERRGLSSKIEETMRAAA
                     APCAPDWQQRWARSVEVTGLPVYRMPSGAGHDAMKLHEVMPQAMLFVRGENSGISHNP
                     LESSTNDDIQLAVEAFARLLDELAENPSR"
     gene            complement(2913..>3288)
                     /locus_tag="VF308_02825"
     CDS             complement(2913..>3288)
                     /locus_tag="VF308_02825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="allantoinase"
                     /protein_id="HEX7435616.1"
                     /translation="LPFWMPVGKSDGTTLQRLIVPYTLDTNDMRFASMQGFNTGDHFL
                     AYLKDAFDVLYAEGDPGGLDRPKMLSIGMHCRILGRPARFHALQRFLDHVQCHEHVWI
                     TRRIDIARHWMQVHPASGASAA"
BASE COUNT          466 a         1094 c         1182 g          546 t
ORIGIN      
        1 ccatagatcg ccgccggcac gccggcctcg ccgtagaggc gcacgtcggt gtagagcggc
       61 gagcccgagg tcggaatcgg cacgccgaac acggtctcgc cgtggcgttg cagcgcctcg
      121 acgagcggct tgttgccggg cagcggctgc agcgcgttgg cgcgcaatat ccgccggatc
      181 tcgacctgga cgcccggcac ttcggcggcg gccgcggcga tcaccgtgcg gatcgacgcc
      241 tcgacttcgg ccgggctttc ctcggggatc atgcgccggt cgagcttgaa caccaccttg
      301 ccaggcacga cgttggtgtt ggtgccgcct tcgatgcgtc cgacgttgag gtacggatgc
      361 gtgatgccct cgactttcga agtcacctcg cggtacaggt cgttttgccg atagagcgcg
      421 ttgaggatcg cgaccgcgcc ctgcagtgcg tcgatgccgg tgctcgggat cgccgcatgc
      481 gccatccggc ccagcaccgt cacctccatc tgcaggcagc cgttgtgcgc gatgacgacc
      541 tggtagctga agccggcggc gagcagcagg tcgggccggg tcaggccttg ctcgagcagc
      601 cagcccgggc cgagctcgcc accgaattcc tcgtcgtacg tgaaatgcag ttcgaccgcg
      661 cccttgagcg gcacggcgag cgattcgagg gcgcgcacgg cgaagctgta ggtcgcgaaa
      721 tcgctcttgc tgaccgccgc cgcgcgaccg tagagcttgc cttcggccac ctcaccgccg
      781 taagggtcgt gggtccagcc ctcgccgggc ggcacgacat caccgtgcgc gttcagcgcg
      841 atcgtgggcc ccgggccgta gcgccggcgc acgatcaggt tggtgagcga ctcgaggccg
      901 tacgccttcg cagccgccgc cggtaccgga tgtctttcgg cgtcgaagcc gaagccctgc
      961 aacagttcgg cggtgcgctc ggcgtgcggc gcattgttgc cgggcggcgt gtcggtcggg
     1021 atctgcacca gggcctgcag gaagcgcacc tcttcgtcga agtgggcgtc gatccagcgg
     1081 tcgagtcgtt cgtaggtaga catgggggct tcacgctagc gcgacgggtt ctctgcaagt
     1141 tcgtcgagca ggcgcgcgaa cgcctcgacc gcgagctgga tgtcgtcgtt ggtgctcgat
     1201 tcgagcgggt tgtggctgat gccggagttc tcgccgcgca cgaagagcat cgcctggggc
     1261 atcacttcgt gcagcttcat ggcgtcgtgg ccggcaccgc tgggcatgcg gtagacgggc
     1321 aggccggtga cctcgaccga gcgcgcccag cgctgctgcc agtcgggcgc gcacggggcc
     1381 gccgcggcgc gcatcgtctc ctcgatcttg gagctcaacc cgcgccgctc gcaaatggcc
     1441 tgcagccggg ccaacacgtc ccgggcgcag gtgtcgcgca cggggtcggt ggtggcgcgg
     1501 atgtcgagcg tgaactcgca gcggccgggc acgacgttgg tcgagccgtt cggcaccgcg
     1561 agcatgccca tcgtgccgac caggttcggc tcccgcgctg cccgctcctc gacgtagagc
     1621 gcgagttctg ccactgccgt cgcggcatcg cggcgccggt ccatcggtgt cgtgccggcg
     1681 tggctcgcca tgccggtcac gctgccggcg tagcgcacgc cgccgttgat cgaggtcacg
     1741 acgccgagcg gcaggtcgag ttcgttgagc accgggccct gctctatatg cagttcgacg
     1801 aagccgaggt atttcgccgg atcgcgccgg atcttcggaa tgtcgtcgat gcacaggccc
     1861 gcgcgctgca tcgcgtcgcg catcgtgatg ccgtcggcgt cgtgctggtc gagccaggcc
     1921 gggtcgaact gcccgaccag cgcgcccgag ccgagaaagg tcgccttgta gcgctggcct
     1981 tcctcttcgg cgaagccgac cacttcgaag tcgaaaggca ggcgcctgcc ggcgcgggaa
     2041 aggtcgcgca cgcaggccat gggcgcgagg atgccgagcc ggccgtcgta ttttccgccg
     2101 ttgcgcacgg tgtcgaagtg cgagccggtg agcagccgcc tcgcgccgcg gtcggtgccg
     2161 tgatagaggc cgacgacgtt gcccaccgca tcgatgctca cgtcgtcgaa gccgcagtcg
     2221 tcgcgcatcc agtgcgccag ccgctgcgcg caggcgcggt gcgcgtcggt caggtaggta
     2281 acggtgagct ggccggactc ggcgtagccc ggctcgctgt gctgggccag ccgctcggcc
     2341 cagtcccaga cgaggttgcc gcgctcgggc gtcacgccga agctgtcgtc gaggcggatc
     2401 tcggcgatgc ggtggatgtt gcgcaggcat tcggccagct cgaagtcgcg gtggtgggcg
     2461 aggcgccgct cgaacgccgc gatgatctgc tgtcggctca agcccagccc gcgcggcccg
     2521 cgcaccgcga gcacgaaggg ccagccgaac ttcgcgttgt aggcggcgtt gagctgttcg
     2581 atgtgcgcga actcttcggg cgtgcagtcg gtgagcccgg ccttgccttg ctcgttcgtc
     2641 gactcggcgg tgaggctctt gctcatcatc gccttgccgg cgagttcggg gtgggcgcga
     2701 accagcgcga tctgcgcctc gcgtccggct ccgcgcacca cctcgaccag ggcgcgcttg
     2761 agctgcgcca ggctcgcgaa cggccgcgcg ctccaggcct gttccgcgat ccacggcgac
     2821 tgctcgtagg tgccgtccag cagcgccgtg aattcgtcct gcgggacggc gctgaggcga
     2881 tccagggtca gggtcgggac catcagcgtc tcctaggcgg ccgacgcgcc ggaggccgga
     2941 tgcacctgca tccagtggcg ggcgatgtcg atgcgccgcg tgatccagac gtgctcgtgg
     3001 cactgcacat ggtcgagaaa gcgctgcagc gcatggaaac gcgccggccg gccaaggatg
     3061 cggcaatgca tgccgatcga aagcatcttc ggccggtcga gcccgccggg atcgccctcg
     3121 gcatagagca catcgaacgc atccttcagg taggcgagga aatggtcgcc ggtgttgaag
     3181 ccctgcatcg aggcgaagcg catgtcgttg gtgtcgagcg tgtacggcac gatcaggcgc
     3241 tgcagggtcg tgccgtcgga cttgccgacc ggcatccaga acggcagg
//
LOCUS       DASVHM010000145         4755 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_515303, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000145 DASVHM010000000
VERSION     DASVHM010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4755
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515303"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..4291)
                     /locus_tag="VF308_02830"
     CDS             complement(<1..4291)
                     /locus_tag="VF308_02830"
                     /inference="COORDINATES: protein motif:HMM:NF015501.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein"
                     /protein_id="HEX7435617.1"
                     /translation="MQIGLKPGASGAVVERLHRILHAVGFGVDAEEKDKAEFGPSTAA
                     ALSSLQAQHGLPSEGEVDERTLKVLLELEAVTINIYEGAPPPPPPRRPGDGDDDDHRG
                     TVHGTLVDGDGAPVPHLRLALFAQRLRGETHLSDARADDQGRYRMAYRRPRALNLLVR
                     AYAAEETVVAESPVVFAAAADVRIDITTAADGVVRTPSAYTLLAAEVAVQLHGTPLQD
                     LTEDSQTHDLRFLASATGASFNDVARLYIAHRLGLQNQLNDATLFAIFSQGIPAPLTA
                     ALGDLPDAGIDDTFVAQVLAGVLAQASATLASALGTALAANMLPQSYAGLQAADLARL
                     DGLRVQSAGATPYIRGKTPLASLLAAGSVDSVASTTFIATYAAAGGRLGPTWKAIRAA
                     KTLTAAQIATLNTTLSVGELLGGNLPLVQDTLQRLGQGSLTSVQNLALLDQSDWEARI
                     TAVDPQATTIPPVLPNDTPAQRIARFAKALAERFASRYPTIAFVGGLTKATASSFAAK
                     ADLISVLSANPSLNLTRTNIDQYVAKNKLTLPAAALAELKTAQRLHRLSPHYATVEAL
                     NGAGYTSAQSVYFKGRGPFVAQMTPLMGSAPLANAAWVRAQIGYASSLAAFGRYHLAL
                     NGINFAVMASAVPPPDTVANLPSLQALFGSLDYCECSDCRSVTSPGAYLVDLLQFLKQ
                     RAASGGFANARDVLLARRADIQYIALGCENTDVTLPYIDIVNELLESAIAPPATPATL
                     IVTTGTSDERRALPQQVSPAAYALTAGAVYPLTLPFDLAFAQTAAFLAALGSPLAQTM
                     ALCGSGGAATCAAGQLGLNPAMQAVVNGSDAHQPWQRWGFASANPASVIDPKTRQPFA
                     PADWIAALSNVPVLLARAGLSIDQLYQLLEVLWVTQGTVTLQPGFMGVGDAQVVSCDT
                     EAMTFTGLNAAALDRASRFLRLWTATQLQMWELDWALAQAAGGLMDDAFVTVLAGAMA
                     LRDRLGLPLQELVGFWGPLQTRDVTNHLGDEDTTVPSTYSSVFRNPTMLASWGAVFVD
                     AASLAGSPIIVPADPPPTAAQLANLNAIKAALGLAADDVAAIIAATGAANALTLDTLN
                     VLLRHAHLASSLSLPVGDLLQWIALTAAQPFGGTPADTSEFLRRLVLLQGSGIALHDL
                     DYLLRNASASQSAIAFTPAQALSVLQTVRDALAKLTPAAQADAPTVQTIFVNALADAT
                     HVTADVIAPVLTRSGVLPLPPATIALLLAQTSGVDPTLFPALVAAFTQVAKAAVLFGA
                     LQPSVGEFAFLIQGAASFNWLDPSELPLATPATSPYAAFERLLQALALNRRQSARSPK
                     LFDVLGNWLAALPADVPGAIGGNGGALALALNASVPDVTALAVSLGATAPSLAAATQP
                     GSLGDMAQLSALAAGLDVALKYHISAATLVQLAAAPPTTDSAAAAFGVFQAQ"
     gene            complement(4322..>4755)
                     /locus_tag="VF308_02835"
     CDS             complement(4322..>4755)
                     /locus_tag="VF308_02835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435618.1"
                     /translation="EFDLNPALSVQRYGKDGNVMALGLVQPSLVLNAAFNDWPADNWQ
                     TNVELGATANIGAGRAVADRGKPGASGSSATGTPFSLTTTLGLGFTKAWGDYALSVEP
                     FVQHDAFTNAAAGGSSGSFWDGGWTGGLKLGFTAINVPGRK"
BASE COUNT          704 a         1588 c         1752 g          711 t
ORIGIN      
        1 actgggcttg gaagacgccg aacgccgcgg ccgccgaatc ggtggtcggc ggcgcggccg
       61 ccaactgcac cagcgtggcc gcgctgatgt ggtacttgag cgcgacgtcg agcccggcgg
      121 ccagcgccga gagctgcgcc atgtcgccga gcgagccggg ctgggtggcc gccgccaggc
      181 tcggcgcggt ggcgccgagc gaaacggcga gtgcggtgac gtcgggaacg ctggcgttca
      241 gcgccagcgc cagggcgccg ccgttgccgc cgatggcgcc tggcacatcc gccggcagcg
      301 ccgcgagcca gttgcccagc acgtcgaaca gcttgggcga gcgcgcgctc tggcgcctgt
      361 tgagcgcgag cgcctgcagc agccgctcga acgcggcgta ggggctagtg gccggcgtgg
      421 ccagcggcaa ttcgctcggg tcgagccagt tgaaagacgc ggcgccctgg atcaggaacg
      481 cgaactcgcc aacgctcggc tggagcgcac cgaacagcac cgccgccttg gccacctgag
      541 tgaacgcagc gaccagggcc gggaacagtg tcgggtcgac gcccgaggtc tgcgccagca
      601 gcagcgcgat cgtcgccggc ggcagcggca gcacgccgct gcgcgtcagt accggggcga
      661 tcacgtcggc cgtgacgtgg gtggcgtcgg ccagcgcgtt gacgaagatc gtctgcacgg
      721 tcggagcatc ggcctgcgcc gccggtgtga gcttggccag cgcgtcgcgc acggtctgga
      781 gcacgctgag cgcctgggct ggcgtgaacg caatcgcgct ttgcgaggcc gaagcgttgc
      841 gcagcaggta gtcgaggtcg tggagcgcga tcccgctgcc ttgcagcagc accagccggc
      901 gcaggaattc gctcgtatcg gccggcgtgc cgccgaaggg ctgggcagcg gtgagcgcga
      961 tccactgcag caggtcgccc accggcagcg agagcgaaga cgccagatgg gcatgacgca
     1021 gcaggacatt cagcgtgtcc agcgtcaacg cattggccgc gccggtggcg gcgatgatgg
     1081 ccgccacgtc gtcggcggcg aggccgagcg cggccttgat cgcgttcagg ttggcgagtt
     1141 gcgccgccgt cgggggtggg tcggccggca cgatgatcgg gctgcccgcc agcgatgccg
     1201 catcgacgaa caccgcgccc catgaggcca gcatcgtcgg gttgcggaac acgctgctgt
     1261 aggtcgacgg caccgtcgtg tcctcgtcgc cgaggtggtt ggtcacatcg cgcgtctgca
     1321 gcggacccca gaagccgacc agttcctgca gcggcaggcc gagccggtcg cgcagcgcca
     1381 tcgcaccggc gagcacggtg acgaacgcat cgtccatcag tccacccgcg gcctgcgcca
     1441 gcgcccagtc gagctcccac atctgcaact gcgtggccgt ccacaggcgc aggaagcggc
     1501 tggcgcggtc gagcgctgcg gcgttcagcc cggtgaaggt catcgcctcg gtgtcgcagc
     1561 tgacgacctg cgcgtcaccg acgcccatga agcccggctg cagcgtcact gtcccctgtg
     1621 tgacccacag cacttcgagc aactggtaga gctgatcgat actgagaccc gcgcgggcga
     1681 gcagcaccgg cacattcgac agcgcagcga tccagtcggc gggcgcgaac ggctgccgcg
     1741 ttttggggtc gatcacgctc gccgggttgg ccgacgcgaa gccccagcgc tgccagggtt
     1801 gatgggcatc gctgccgttg accacggcct gcatcgccgg gttcaggccg agttggccgg
     1861 cggcacacgt agcggcgccg ccgctgccgc acagtgccat cgtctgcgcg agcgggctgc
     1921 cgagcgcggc caggaaggcg gcggtctgcg cgaacgcgag gtcgaacggc agcgtgagcg
     1981 gatacaccgc gcccgccgtc agagcgtagg cggccggcga tacctgctgc gggagcgcgc
     2041 gccgttcgtc cgaagtgccg gtggtgacga tcaacgtggc cggtgtcgcc ggcggtgcga
     2101 ttgcgctttc gagcaactcg ttgacgatgt cgatgtacgg cagcgtgacg tcggtgttct
     2161 cgcagccgag cgcgatgtac tggatgtcgg cgcgccgcgc cagcagcacg tcgcgcgcgt
     2221 tcgcgaagcc gccgctggcg gcacgctgct tgaggaactg cagcagatcc accaggtagg
     2281 cgccagggct ggtgaccgag cggcagtcgc tgcactcgca gtagtcgagc gagccgaaca
     2341 acgcctgcag gctgggcagg ttggccaccg tgtccggcgg cggcactgcc gatgccatga
     2401 cggcgaagtt gatgccgttg agcgcgaggt gatagcggcc gaacgcggcc agcgaactgg
     2461 cataaccgat ctgcgcccgt acccaggccg cgttggcgag cggggcgctg cccatcagcg
     2521 gagtcatctg cgcgacgaag ggcccgcgcc ccttgaagta gacactctgc gccgacgtat
     2581 agcctgcgcc attaagggcc tcgacggtgg cgtagtgtgg cgacagccgg tgcaggcgct
     2641 gcgcggtctt caattcagcc agcgccgcgg ccggcagcgt gagcttgttc ttcgccacgt
     2701 actggtcgat gttcgtccgc gtgagattga gcgacgggtt ggccgacagc accgagatca
     2761 gatcggcctt cgccgcgaac gacgaggcgg tggccttcgt cagcccgccg acgaaggcga
     2821 tcgtcggata gcgcgacgcg aagcgttcgg ccagtgcctt ggcgaaacgg gcgatgcgtt
     2881 gcgccggcgt gtcgttgggc agcaccggcg gaatcgtcgt cgcctgcggg tcgacggccg
     2941 taattcgcgc ctcccagtcg gactggtcga gcagggccag gttctgcacg ctcgtcagcg
     3001 agccttggcc gaggcgctgc agcgtgtcct ggaccagcgg caggttaccg cccagcaatt
     3061 cgccgacgct cagcgtcgtg ttgagcgtcg cgatctgagc cgcggtcaag gtcttcgcag
     3121 cgcgaatcgc cttccaggtc ggccccagtc ggccgccggc agccgcgtag gtcgcgataa
     3181 atgtcgtgct cgcgacgctg tcgacgctgc ccgcggcgag cagcgaagca agcggcgtct
     3241 tgccgcggat gtacggcgtg gcgccggcgc tctgaacgcg cagcccgtcc agccgcgcga
     3301 gatcggccgc ctgcagcccc gcgtacgact gcggcagcat gttcgcggcc agcgctgtgc
     3361 cgagcgccga agccagcgtg gcgctcgcct gcgcgagcac gccggccagc acctgcgcga
     3421 cgaaggtgtc gtcgatgccg gcatcgggca ggtcgccgag ggcggcggtc agcggagccg
     3481 gaatgccctg gctgaagatg gcgaacaacg tggcatcgtt caactggttc tgcaggccca
     3541 ggcgatgcgc gatgtacagc cgcgccacgt cgttgaagct cgcaccagtg gcactggcga
     3601 ggaagcgcag gtcgtgggtc tggctgtctt cggtcaggtc ctgcagcggc gtgccgtgga
     3661 gctggaccgc gacctcggcg gcgagcaggg tgtaagccga cggcgttcga acgacgccgt
     3721 ccgcggccgt cgtgatgtcg atccgcacgt cggccgcggc ggcgaacacg accggcgact
     3781 cggccaccac cgtctcttcg gccgcgtagg cccggaccag caggttcagc gcccgcgggc
     3841 ggcggtatgc catgcggtag cggccctggt cgtcggcgcg cgcgtcgctg aggtgcgtct
     3901 cgccgcgcag gcgttgggcg aacagcgcca gccgcaggtg aggaaccggc gcgccatcgc
     3961 cgtcgaccag cgtgccgtgc acggtgccgc ggtggtcgtc gtcgtcaccg tcgcccggcc
     4021 ggcgcggcgg cgggggcggc ggcgcgccct cgtagatgtt tatggtgacc gcctccagtt
     4081 cgagcagcac cttcagcgtg cgctcgtcga cctcgccttc gctcggcagg ccgtgctggg
     4141 cctggagcga actcagtgcc gccgcggtcg acggtccgaa ctcagccttg tccttttctt
     4201 cagcatcgac gccgaacccg actgcgtgca gtattcggtg caggcgctcg acgacggcgc
     4261 cgctggcgcc gggcttgagt ccgatttgca tggcgtttcc cccttgatcg cgcgcggcgc
     4321 cctatttccg gccgggcacg ttgatggcgg tgaacccgag cttgaggccg ccggtccagc
     4381 cgccgtccca gaacgagcca ctgctgccgc cggcagcggc gttcgtgaac gcgtcgtgct
     4441 ggacgaaagg ttcgacgctg agcgcgtagt cgccccaggc cttggtgaac ccgaggccga
     4501 gcgtggtggt cagcgagaac ggtgttcccg ttgcactgga tccggaggcg cccggcttgc
     4561 cgcggtccgc gacggcacga cccgcgccga tgttcgcggt ggcacccagc tccacgttgg
     4621 tctgccagtt gtccgcgggc cagtcattga aggctgcgtt gaggaccaga gaaggctgga
     4681 cgagccccag tgccatgacg ttgccgtcct tgccatagcg ttgcaccgac agtgccgggt
     4741 tgaggtcgaa ttcgg
//
LOCUS       DASVHM010000146         5223 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_877134, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000146 DASVHM010000000
VERSION     DASVHM010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5223
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_877134"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..615)
                     /locus_tag="VF308_02840"
     CDS             complement(<1..615)
                     /locus_tag="VF308_02840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012836930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase molybdopterin binding
                     subunit"
                     /protein_id="HEX7435619.1"
                     /translation="MNKPIDHAVLRSSGAFADHLENSAYRIDASGEAAAAEAGARVGI
                     SRPHESAHLHVAGAAPYVDDLPELAGTLHAALGLSPVAHGRITALDLDRVRALPGVVA
                     VLSAADIPGPNDCGAIIHDDPILAEGVVRYLGQPVFAVIAETREAARRAASQAKKVLE
                     IEPLPAIFTPEAAHAAGQYVLPPMHLNRGNARAAIDAAPRKLTGR"
     gene            complement(612..2156)
                     /gene="xdhA"
                     /locus_tag="VF308_02845"
     CDS             complement(612..2156)
                     /gene="xdhA"
                     /locus_tag="VF308_02845"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007830578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004854 - xanthine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009115 - xanthine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase small subunit"
                     /protein_id="HEX7435620.1"
                     /translation="MQNRPIRFFHRGQVVEVKDALPTRTVLDWLREDARCTGTKEGCN
                     EGDCGACTTVVGELAEPGDAAAVRGLTLRTVNACIQFLPALDGKALFTVEDLKAIQAQ
                     AAADDLHPVQRAMVECHGSQCGFCTPGFVMSLWSAYERNQACGAQPTRQQLADELSGN
                     LCRCTGYRPILDAGQRMFELPAAALDTAPAVAALQALRSDAGLAYEAGGARFDAPRTL
                     DELAGLRLARPGATLLAGSTDVGLWVTKLFRDLPDLIHLGAVAELKRIERRGDALHIG
                     AGASLEDAFRALVREWPSLEDVWLRFASVPIRNAGTMGGNVANGSPIGDSAPVLMALD
                     AVVELRRGARVRSMALADFYVDYMKNRLESGEFVQGLSVPLDSAAQVRAYKMSKRFDC
                     DISAVCAGLAIELDGGLVSAVRFAFGGMAATVRRAARAEAATLGQPWTEATLRSAQRE
                     LGHDFTPLTDMRASAGYRTQVAQNLLRRFWLETRIADPLTTSQLSVWSVMPHAALPAA
                     LEGSAR"
     gene            2250..3254
                     /locus_tag="VF308_02850"
     CDS             2250..3254
                     /locus_tag="VF308_02850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX7435621.1"
                     /translation="MTLRVESDKIEVFLIRVLQTLITERSVSRAAMRLQSTQPAVSAQ
                     LKRLRALTGDPLLVRAGNGMVPTETALQLLAPATRILQDADRLFSARSRQRGFEPQTS
                     TALFRVAASDYLDPLFLPELVAQLKKLAPQVRLELLPLSGEFDYRRSLASGAVDLVIG
                     NWLEPPDELHLGRLLSDEIVCLVAEDHPAARSAATRAWTIDRYLACEHVAPTPLHANA
                     PGVIDEHLASLGKAREVMVRSAHFSLIPLMVAQSLLVLTTGRLFCSRYVDALPVRIVR
                     CPVPFPPLTYYQLWHDLTHASASVRWLREQVRDVARNLSSHGMLQRNRAGRPAAADPS
                     "
     gene            3251..4576
                     /gene="guaD"
                     /locus_tag="VF308_02855"
     CDS             3251..4576
                     /gene="guaD"
                     /locus_tag="VF308_02855"
                     /EC_number="3.5.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008892 - guanine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006147 - guanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanine deaminase"
                     /protein_id="HEX7435622.1"
                     /translation="MSVAPTTATGRVALRGDLLDFLGEPAWGDVDSDAVRFRPDHWLL
                     IENGRIAGAQADRPDASWVRHDHGGRLILPGFIDTHVHSPQIDVIASYGTELLDWLDQ
                     HTFPAEIRYADAAHAESGAALFLDALIGHGTTAAVVFPTVHKVSVDALFDAARARGMR
                     LVAGKVLMDRNAPDGLRDDVDQAERDCIDLIGRWHGTGRLAYAVTVRFAPTSSPAQLA
                     MAGHLCAADASLYLQTHLAENRAEVRWVHELFPQARSYLDVYARAGLLHAKSVFAHGI
                     WLDDADRAALRETGAQIAHSPSSNLFLGSGLFDWRAAEAAGVAVSVASDVGGGTSLSM
                     LRNLAYAYKVQALAGQRLTAWKALHTATRGAARALGLDREIGSLDPGCMADLCVWDWA
                     VGSVALRRAEVARSLHERAFAWMLLGDERNLVTAMVGGVTRYQRGREAS"
     gene            4693..>5223
                     /locus_tag="VF308_02860"
     CDS             4693..>5223
                     /locus_tag="VF308_02860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7435623.1"
                     /translation="MLRLELVNISKQYPAVKANDGVNLRVQPGEIHAVLGENGAGKST
                     MMKMIYGAVRPDEGEIRWNGAAVTIRNPQEARALGISMVFQHFSLFDTLTAAENVWLG
                     LDKALQLSEVTQRIIKVAAEYGLDVDPLRPVHTLSVGERQRVEIVRALMTAPKLLILD
                     EPTSVLTPQAVQTLFVT"
BASE COUNT          750 a         1836 c         1844 g          793 t
ORIGIN      
        1 ccggccggtg agcttgcgcg gtgccgcgtc gatggccgcg cgcgcattgc cgcggttgag
       61 gtgcatcggc ggcagcacgt attgcccggc cgcatgggcc gcttcgggcg tgaagatggc
      121 gggcagcggc tcgatctcga gcaccttctt cgcttggctt gcggcacggc gcgccgcctc
      181 gcgggtctcg gcgatcaccg cgaacaccgg ctggccgaga tagcgcacaa cgccctcggc
      241 caggatcggg tcgtcgtgga tgatcgcgcc gcaatcgttc gggccgggaa tgtccgcggc
      301 cgacagcacc gcgaccacgc cgggcagcgc gcgcacgcgg tcgaggtcca gcgccgtgat
      361 gcgtccgtgc gccaccggcg agaggccgag cgcggcgtgc agcgtgccgg ccagttcggg
      421 caggtcgtcg acgtagggcg ccgccccggc gacgtgcagg tgtgccgatt cgtgcgggcg
      481 gctgatgccc acgcgcgcgc cggcctcggc cgccgcagcc tcgccgcttg cgtcgatgcg
      541 gtaggcgctg ttctcgagat ggtcggcgaa cgccccggac gagcgcagca ccgcgtgatc
      601 gatcggcttg ttcatcgcgc actcccttcg agtgcggccg gcagggccgc gtgcggcatc
      661 acgctccaga cgctcagctg gctcgtcgtc agtggatccg cgatgcgagt ttcgagccag
      721 aagcggcgca gcaggttctg cgccacctgg gtccgatagc cagcgctcgc gcgcatgtcg
      781 gtgagcgggg tgaaatcgtg gccgagctcg cgctgcgcgg accgcaaggt cgcttcggtc
      841 cagggctggc cgagggtggc ggcctcggcg cgcgccgcgc ggcgcaccgt cgcggccatg
      901 ccgccgaagg cgaagcgcac ggccgagacc agcccgccgt cgagctcgat cgcgaggccg
      961 gcgcagaccg ccgagatgtc gcaatcgaag cgcttcgaca tcttgtaggc gcgcacctgc
     1021 gcggcgctgt cgagtggcac gctcaggccc tggacgaatt cgcccgactc gagccggttc
     1081 ttcatgtagt cgacgtagaa atcggccagc gccatcgagc gcacgcgcgc gccccggcgc
     1141 aattcgacca cggcatcgag ggccatcagc accggcgcgc tgtcgccgat cggcgagccg
     1201 ttggcgacgt tgccgcccat cgtgccggcg ttgcggatcg gcaccgacgc gaagcgcagc
     1261 cagacgtcct cgaggctcgg ccattcgcgc accagcgcgc ggaaggcgtc ctcgagcgag
     1321 gccccggcac cgatgtgcag cgcgtcgccg cgccgttcga tgcgcttgag ttcggcgacc
     1381 gcgccgagat ggatcaggtc gggcaggtcg cggaacaact tggtcaccca caggccgacg
     1441 tcggtcgagc cggcgaggag ggtggcaccg gggcgggcga gccgcaaccc ggccagttcg
     1501 tcgagcgtgc gcggcgcgtc gaagcgcgcg ccgccggctt cgtaagccag gccggcgtcg
     1561 ctgcgcagcg cctgcaacgc ggccaccgcc ggcgcggtgt cgagggctgc cgcgggcaat
     1621 tcgaacatgc gctggccggc atcgaggatg ggccggtagc cggtgcagcg gcagaggttg
     1681 cccgaaagtt cgtcggcgag ttgctggcgc gtcggctgcg cgccgcacgc ctgattgcgc
     1741 tcgtaggccg accacaacga catcacgaaa ccgggcgtgc agaagccgca ttgcgagccg
     1801 tggcactcga ccatcgcccg ctgcaccggg tgcaagtcgt cggccgcggc ttgcgcctgg
     1861 atcgccttca gatcttcgac cgtgaacagg gccttgccgt cgagcgccgg caggaactgg
     1921 atgcaggcgt tcaccgtgcg cagggtgagg ccgcgaaccg cggccgcgtc gcccggctcg
     1981 gcgagttcgc cgacgaccgt ggtgcaggcg ccgcagtcgc cctcgttgca accttccttg
     2041 gtgccggtgc agcgcgcgtc ttcgcgcagc cagtcgagca cggtgcgcgt cggcagggcg
     2101 tccttgacct cgacgacctg gccgcggtgg aagaatcgga tcggacggtt ttgcatggcg
     2161 gatcgacgct ccggatatgg ctcgtaaggt aacggctaat ggcgcgcgcc gtatctctgg
     2221 cggcgcatag tacctatcat ccagggctta tgacactgcg cgtcgagtcg gacaagatcg
     2281 aggtcttcct catccgggtg ttgcagacct tgatcaccga acgcagtgtc tcgcgggccg
     2341 ccatgcgatt gcagagcacg cagcccgccg tgagcgccca gttgaagcgc ctgcgcgcgc
     2401 tcaccggcga tccgctgctg gtgcgcgccg gcaacggcat ggtgccgacc gagacggcgc
     2461 tgcaactgct cgccccggcg acgcggatcc tgcaggacgc cgaccggctc ttcagcgcgc
     2521 gttcgcgcca gcgcggcttc gagccgcaga cgagcaccgc gctgttccgg gtcgcggcga
     2581 gcgattatct cgatccgctc ttcctgcccg aactggtggc gcagctgaaa aagctcgctc
     2641 cgcaggtgcg cctcgagctg ctgcccctgt cgggggaatt cgactaccgc cgcagcctcg
     2701 cgagcggcgc ggtcgacctc gtgatcggca actggctcga gccgccggac gaactgcacc
     2761 tcggccgcct cctctccgac gagatcgtct gcctggtcgc cgaagaccat cccgccgcgc
     2821 gcagcgccgc gacccgggcc tggaccatcg atcgctacct cgcctgcgaa cacgtggcgc
     2881 cgacgccgct gcacgcgaac gcgccgggtg tgatcgacga gcacctggcg tcgctcggca
     2941 aggcgcgcga ggtgatggtg cgcagcgccc atttcagcct gatcccgctg atggtggcgc
     3001 aaagcctgct cgtgctgacc accgggcgcc tcttctgctc gcgctatgtc gatgccctgc
     3061 cggtgcgcat cgtgcgctgc ccggtgccgt ttccgccgct cacctattac cagctgtggc
     3121 acgacctgac gcatgcgtcg gcgtcggtgc gctggctgcg cgagcaggtg cgcgatgtcg
     3181 cgcgcaacct gagctcgcac ggcatgctgc agcgcaaccg ggcgggccgc cccgcagcgg
     3241 ccgatccgtc atgagcgtgg ctccgaccac agccaccggc cgcgtcgcgt tgcgcggcga
     3301 cctgctcgac tttttgggcg agccggcctg gggcgatgtc gattcggacg ccgtgcgctt
     3361 tcgtccggac cactggctgc tcatcgagaa cggccgcatc gccggcgcgc aggcggaccg
     3421 gcccgacgcg agctgggtcc ggcatgacca cggcggccgg ctcatcctgc ccggcttcat
     3481 cgatacccat gtgcacagcc cgcagatcga cgtgatcgcg agttacggca ccgaactcct
     3541 cgactggctc gatcagcaca cttttccggc cgagatccgc tatgccgatg cggcgcatgc
     3601 cgagtcgggc gcggcgctct ttctcgacgc gctgatcggg cacggcacga ccgcagcggt
     3661 cgtgtttccg acggtccaca aggtctcggt cgacgcgttg ttcgacgcgg cgcgcgcgcg
     3721 cggcatgcgc ctcgtcgccg gcaaggtgct aatggaccgg aacgcgcccg acggcctgcg
     3781 cgacgacgtc gatcaggccg agcgcgactg catcgacctg atcgggcgct ggcatggcac
     3841 gggccggctc gcctatgcgg tgaccgtgcg cttcgcgccc accagcagcc cggcgcagct
     3901 cgcgatggcg gggcaccttt gcgccgctga cgcgagccta tacctgcaga cgcacctcgc
     3961 cgagaaccgc gccgaggtgc gctgggtgca cgagctcttc ccgcaggcgc gcagctacct
     4021 cgacgtgtac gcgcgcgccg gcctgctgca cgcgaagagc gtgttcgcgc acggcatctg
     4081 gctcgacgac gccgaccgcg ccgccctgcg cgagaccggt gcccagatcg cccacagccc
     4141 ctcgtccaac ctcttcctcg gcagcggcct cttcgactgg cgcgccgccg aggcggccgg
     4201 tgtcgccgtc agcgtcgcca gcgatgtcgg cggcggcacc agcctttcga tgttgcgcaa
     4261 cctggcgtat gcgtacaagg tgcaggcgct ggccggccag cgcctgaccg cgtggaaggc
     4321 gctgcacacg gccacgcgtg gcgccgcgcg cgccctcggg ctggaccgcg agatcggctc
     4381 gttggatccc ggctgcatgg ccgatctctg cgtctgggat tgggccgtgg gctcggttgc
     4441 gctgcggcgc gcggaggtgg cgcgcagctt gcacgaacgg gcgtttgctt ggatgctgct
     4501 cggggatgag cgcaacctcg tgaccgccat ggtgggcggg gtcacccggt atcaacgcgg
     4561 gcgtgaggcc tcatgaaata ttgcttgaca cttgcagcag cccgccggga ctcggcccgg
     4621 catgcccggc cgagaccggg cgggctcttg caggggccgc cgatttccgg cgggctctag
     4681 gagacaaacg aaatgcttcg cctcgaactc gtcaacatca gcaagcagta cccggccgtc
     4741 aaggccaacg acggcgtcaa cctgcgcgtc cagcccggcg agatccatgc ggtgctcggc
     4801 gagaacggcg cgggcaagtc gacgatgatg aagatgatct acggcgcggt gcgtcccgac
     4861 gagggcgaga tccgctggaa cggcgcggcg gtgaccatcc gcaatccgca ggaggcgagg
     4921 gcgctcggca tcagcatggt gttccagcac ttcagcctgt tcgacacgct gaccgcggcc
     4981 gagaacgtct ggctcgggct cgacaaggcg ctccagcttt ccgaagtcac ccagcgcatc
     5041 atcaaggtcg ccgccgaata cggcctcgac gtcgatccgt tgcggcccgt gcacacgctc
     5101 tcggtcggcg agcgccagcg ggtcgagatc gtgcgcgcgc tgatgaccgc gcccaagctc
     5161 ctgatcctcg acgagccgac ctcggtgctc acgccgcagg cggtgcagac gctcttcgtc
     5221 acg
//
LOCUS       DASVHM010000147         2142 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1092872, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000147 DASVHM010000000
VERSION     DASVHM010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1092872"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..357
                     /locus_tag="VF308_02865"
     CDS             <1..357
                     /locus_tag="VF308_02865"
                     /inference="COORDINATES: protein motif:HMM:NF018657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004144 - diacylglycerol O-acyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WS/DGAT domain-containing protein"
                     /protein_id="HEX7435624.1"
                     /translation="AGVPIERMMFWVPHPGKHLGMGISIMSYRGMASLAVIADARLVP
                     DPEAITDQFNREFATMLRGVKARIKKASARPPVGSKIAGRKTMSHKTAGRSVGARTVA
                     RKTIRVTPKTQRQVPS"
     gene            538..>2142
                     /locus_tag="VF308_02870"
     CDS             538..>2142
                     /locus_tag="VF308_02870"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEX7435625.1"
                     /translation="MDAATWQRLEQLFADAIARPADERAAFCDGACADDPALREELRA
                     LVDAHEADRSVLDRPAWANVGAGAAPEVLSEGTRIGVWRVGALIRRGGAGEVYFATRA
                     DGAFDQLVALKRLYRQATPDIERFHAERQILASLDHPGIARLLDGGVADDGRLYAVVE
                     YVDGESVTEHCRRRHADLAYRLALFLQVCDVVSYAHRNLIVHRDLKPGNILVTAEGRV
                     KLLDFGVAKRLDGTAPDQADATSAPFTSDYAAPEQLTGQAITTATDVYALGVLLFELL
                     TGQRPWRSDGMPIARMVQLIVHDEPPSPSRAAGASPASPVPARRLAGDLDAIVATCLR
                     KAAADRYPSVDALQRDVERHRGSEPVAARGRVRLYVLGRAIRRYRWGVAAGSLVFASL
                     AVGLATTAWQAHRAAIERDAARRAATREEAVRYHLTNLFRASIEKKGDGPITAKTMLD
                     RSAQRVLKQYRDDPQLAGKVVVTLADLYGALEDVEGQAPLLEGFLAATGPEADPESVA
                     LARQKLAHIELLRGHVPRAAELLGQAE"
BASE COUNT          338 a          734 c          749 g          321 t
ORIGIN      
        1 gccggtgtgc cgatcgagcg catgatgttc tgggtgcctc atccgggcaa acatctcggc
       61 atggggatca gcatcatgag ctatcgcggc atggcctcgt tggcggtgat tgccgatgcg
      121 cgcctggtgc ccgacccaga ggcgatcacg gaccagttca accgcgaatt cgcgaccatg
      181 ctgcgcggcg tgaaagctcg catcaagaag gcgtcggcaa gaccgccggt ggggtcgaag
      241 attgccgggc gcaagacaat gagccacaag acggctggtc ggagtgtggg cgccagaacg
      301 gtggcccgca agacgatccg ggtgacgccg aaaacgcagc ggcaagtacc ctcttagatt
      361 aggcaggtga tcaccttcgc ctcctgccac aaaggtgggc aggtggtgtg ttgcttcgcc
      421 tccgtggaac cggcgcgact tgccggccgc cgaggcacgc aatgattcgc gaacgagcgc
      481 cgtagacttc cctcgtgctt gccgaggcga gttctgtacg cgaaccgaag ggaagacatg
      541 gatgctgcga cctggcagag gctcgaacag ctcttcgccg acgcgatcgc gcggccggcg
      601 gacgagcgcg cagcgttctg cgacggggcc tgcgccgacg atccggcact gcgcgaggag
      661 ttgcgcgcgt tggtggatgc gcacgaggcc gatcggagtg tgctcgaccg gccggcgtgg
      721 gccaatgtcg gcgccggcgc tgctcccgag gtgttgagcg aaggcacgcg catcggcgtg
      781 tggcgcgtgg gcgcgctgat ccgccgaggc ggcgccggag aggtctattt cgccacacgg
      841 gccgacggcg cattcgatca gctggtggcc ctgaagcggc tttaccgcca agccacaccc
      901 gatatcgagc gattccacgc cgagcggcag atcctcgcga gcctcgacca tcccggcatc
      961 gcgcggctgc tcgatggcgg cgtcgccgac gacggcaggt tgtatgcggt ggtcgagtat
     1021 gtcgacggcg aatccgtgac cgagcattgc cggcgccggc atgccgacct cgcctaccgc
     1081 ctcgcgctgt tcctgcaggt gtgcgacgtc gtgtcctatg cgcaccgcaa cctgatcgtg
     1141 caccgcgacc taaagcccgg caacatcctc gtcaccgccg aaggccgggt caagctgctc
     1201 gacttcggcg tcgccaagcg gctcgatggc accgcgccgg atcaggccga tgcgacgagc
     1261 gcgccgttca cgtccgacta cgcggctccc gagcagctca cgggtcaggc gataacgacc
     1321 gccaccgacg tctacgcgct cggcgtgctg ctgttcgagt tgctgaccgg gcagcggccg
     1381 tggcgaagcg acggcatgcc gatcgcgcgc atggtgcagc tgatcgtgca cgacgagcct
     1441 ccctcgccga gccgcgccgc cggcgcttcg cccgcttcac cggtgccggc tcgccggctc
     1501 gccggcgacc tcgatgcgat cgtcgcgacc tgccttcgca aggccgccgc cgaccgctat
     1561 ccgagcgtcg acgcgctgca gcgcgacgtc gagcgccatc gcggcagcga gccggtcgcc
     1621 gcgcgcggcc gcgtccgcct gtacgtgctc ggccgcgcga tccggcgcta ccgctggggc
     1681 gtcgcagccg gttcgctggt cttcgcgagc ctggcggtcg ggctcgcgac cacggcgtgg
     1741 caggcgcatc gtgcggcgat cgagcgcgac gcggcgcggc gtgccgcgac ccgtgaagaa
     1801 gcggtccgtt atcacctgac caacctgttc cgcgcttcga tcgagaagaa gggcgacggc
     1861 ccgatcaccg ccaagaccat gctcgaccgc agcgcgcagc gcgtgctgaa gcagtaccgc
     1921 gacgatccgc agctcgccgg caaggtcgtc gtcacgctgg ccgatctgta cggcgcgctc
     1981 gaagacgtcg aaggccaggc gccgctgctc gaaggctttc tcgccgccac gggcccggag
     2041 gccgatccgg aatcggtcgc gctggcgcgg caaaagctcg cccatatcga actgctgcgc
     2101 ggccacgtgc cgcgcgccgc agagctgctc ggccaggccg ag
//
LOCUS       DASVHM010000148         6645 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1236713, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000148 DASVHM010000000
VERSION     DASVHM010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6645
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1236713"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..588
                     /locus_tag="VF308_02875"
     CDS             <1..588
                     /locus_tag="VF308_02875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014005710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEX7435626.1"
                     /translation="SHVWVDFRGIRDAYMRDKGSDYFENSRRATRIQQQYGIRNPLGL
                     AHVGELCWGVTASDGPGPAVKKIAGVERRFFDYLARGVPYGPDDGTLAPWAVVASLPF
                     APEIVLPTIMNFRRLSIQVANPYGFKASINPMFTGVNNDGVGWVSKFHFGINEGPTVL
                     MIENHRSGLVWALMRTCQPLVAGLRAAGFGGGWLG"
     gene            781..1452
                     /gene="rpe"
                     /locus_tag="VF308_02880"
     CDS             781..1452
                     /gene="rpe"
                     /locus_tag="VF308_02880"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008253168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEX7435627.1"
                     /translation="MKPLVVAPSILSADFGRLAEEVRAVDAAGADWIHVDVMDGRFVP
                     NISFGPVVVEAVRRATGKPLNVHLMIVEPEHYIEDFVRAGADHILIQSEPASTIHLHR
                     VLSRVRELGKKAGVVLNPASPLAFVEEVLHLCDIVLVMSVNPGFGGQSFLPEVLPKIR
                     ELRRRCVARGLDPWIEVDGGQNGENAWQAVDAGADALVAGSTVFGSRDYAAAIARLRL
                     HARPG"
     gene            1726..2751
                     /gene="gnd"
                     /locus_tag="VF308_02885"
     CDS             1726..2751
                     /gene="gnd"
                     /locus_tag="VF308_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007590035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating 6-phosphogluconate
                     dehydrogenase"
                     /protein_id="HEX7435628.1"
                     /translation="MQLGMIGLGRMGASMVRRLLKKGHECVVFDVHGPAVTASQKDGA
                     TGAASLADMVAKMSKPRAIWLMVPAAVVDQELAQLAPLLDSGDIVIDGGNSYYRDDIR
                     RAAELGAAGHHYVDVGTSGGVAGGDRGYCLMIGGEVEIVAHLTPIFAALAPGVDAAAR
                     TRGRSGDVAPAEQGFLHCGPHGAGHFVKMVHNGIEYGVMAAYAEGLNILRNANIGKLA
                     RAVDAETTPLRNPEFYQYEMNLPEIAEVWRRGSVIGSWLLDLTADALRADPKLAAYGG
                     HVSDSGEGRWTIEAAIDEGVPTHVLSAALYERFASRGGADFANQVLSAMRHEFGGHVE
                     KPAEGSP"
     gene            2748..4184
                     /gene="zwf"
                     /locus_tag="VF308_02890"
     CDS             2748..4184
                     /gene="zwf"
                     /locus_tag="VF308_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEX7435629.1"
                     /translation="MSMAANAGRGQDAPHSDALVIFGFTGDLATKQIFPALYRMVKTG
                     ALTVPVIGVASTSLSVEQVQQRVRDSIEDHGKIDDMPAFDRLLSLLRYVSGDYKQPAT
                     FEALKAALGNAQRPAHYLAIPPALFETVINTLGAVGLAKGARVIVEKPFGRDLASAIE
                     LGAVAQSVFAESSIFRIDHYLGKEAIMNILYFRFANSFLEPIWNRNHVASVQITLAEN
                     FGIGQRGSFYESAGCLRDVIQNHLFQIVALLAMEPPAYQGYAAVQSEKAAVFHGMRPV
                     TADDVVRGQYEGYRNEKDVAADSDVETFCALRLHIDSWRWAGVPWYLRSGKCLPTTAA
                     EVLVQLQPPPQALFDDSRPQGGRANYVRFKLQPMSAVALAARVKRPGKGFVGDQRELY
                     LCEEALSEGSTYERLLGDAMVGDGALFTGQDAVEAAWTVVDPVLVVHHAALPYAPGSW
                     GPAAADALIAADGGWHNPVAEDEHAPCT"
     gene            4198..4896
                     /locus_tag="VF308_02895"
                     /pseudo
     CDS             4198..4896
                     /locus_tag="VF308_02895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091697.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
     gene            4893..5987
                     /gene="tal"
                     /locus_tag="VF308_02900"
     CDS             4893..5987
                     /gene="tal"
                     /locus_tag="VF308_02900"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019936779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEX7435630.1"
                     /translation="MNPNLQKLHALGQSLWLDNITREMLGDGTMASYIAEFSVTGLTS
                     NPTIFEHAIGTGDFYDEQIAESSSRGKSGEELFFELAISDLRRAADLFRPIHDASQGV
                     DGWVSLEVSPVIVNDAAKTTEAAARLSAAAARPNLYIKIPGTAAGVEAIEASIFAGVP
                     INVTLLFSCEQYMAAAAAYLRGIERRLAAGLDPKVESVASLFVSRWDVAVKDEVPPQY
                     RNRLGIAIAKRTYKAYRDLLASPRWQKLAAAGAHPQRLLWASTGTKDPAARDTLYVEA
                     LAAPDTVDTIPDKTLKAFADHGKVEAVLAVDGGDAETVIAEYRKLGIDDAALALRLQQ
                     EGADSFQKSWDSLLAGIKGKSAQLVGAAAR"
     gene            6057..>6645
                     /locus_tag="VF308_02905"
     CDS             6057..>6645
                     /locus_tag="VF308_02905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-glucose phosphate-specific
                     phosphoglucomutase"
                     /protein_id="HEX7435631.1"
                     /translation="MATHISPLAGKPAPASSLVDIARLVTAYYSEVPEPSVAAQRVAF
                     GTSGHRGSSFAVSFNERHVLAITQAICQYRAKQGIDGPLFLGIDTHALSQPACASALE
                     VLAANGVETMLATDDEYTPTPAVSHAILVYNRGRTAGLADGIVVTPSHNPPDNGGFKY
                     NPPNGGPAGTDITGWIEAAANGFLERAMDGVKRVAF"
BASE COUNT         1116 a         2254 c         2172 g         1103 t
ORIGIN      
        1 tcgcatgtct gggtcgactt tcgcggcatt cgcgacgcct acatgcgcga caaggggagc
       61 gactacttcg agaacagccg gcgggcgacg cggatccagc agcagtacgg catccgcaat
      121 ccgctgggcc ttgcccacgt cggcgagctt tgctggggcg tgaccgcgag cgacggaccc
      181 ggcccggcgg tcaagaagat tgccggcgtc gagcgccgct tcttcgacta cctggcgagg
      241 ggcgttccgt atggccccga cgacggcacg ctcgcgccat gggcggtcgt cgcgtcgttg
      301 ccgtttgcgc ccgagatcgt gctgccgacg atcatgaact ttcgccgcct gagtatccag
      361 gtggccaatc cctacggctt caaggcgtcg atcaacccga tgttcactgg ggtcaacaac
      421 gacggcgtcg gctgggtgtc taagttccac ttcggtatca acgaaggtcc gacggtgctc
      481 atgatcgaga accatcgcag cggcctcgtc tgggcactga tgcgcacctg ccagccgctc
      541 gtcgcaggcc tgcgcgccgc cggcttcggt ggtggctggc tcggttgagc gaacgtcagg
      601 atcaggacgt ctgcaggatc gcgccgtcga cgaagacgtc gacacccgtt cttggcgtga
      661 ttgcgcgcgc gggaatcgat tctccggctg aacacggagc gtctcggtca ttttggaggc
      721 gccagctctc gagcaaccgg gttcgaatgg agggggctgg ccctcatgct acaaggtcgc
      781 atgaagccgc tcgtcgtcgc cccgtcgatt ctttccgccg acttcggtcg cctcgccgaa
      841 gaggtccgcg cggtcgacgc ggctggtgcc gactggatcc atgtcgacgt catggacggg
      901 cgtttcgtcc ccaacatcag ctttggtccc gtcgtcgtcg aggcggtgcg ccgggcgacc
      961 ggcaagccgc tgaacgtgca cctcatgatc gtcgagcccg agcactacat cgaagatttc
     1021 gtgcgcgccg gagccgacca catcctgatc cagtcggaac cggcgtcgac gatccacctg
     1081 catcgggtgc tgtcccgagt ccgcgaactc ggcaagaaag ccggggtggt cctgaacccg
     1141 gcaagcccgc tcgcgttcgt cgaggaggtg ctgcatttgt gcgacatcgt tctggtgatg
     1201 tccgtgaacc ccggcttcgg cgggcagtcg ttcctgcccg aggtcttgcc gaagattcgc
     1261 gagttgcggc gtcgttgcgt cgctcgcggg ctcgacccct ggatcgaggt cgacggcggc
     1321 cagaacggcg aaaacgcctg gcaggccgtc gacgccggcg ccgacgcgct ggtcgcgggc
     1381 tcgaccgttt tcgggtcgcg cgactatgcg gctgcgatcg cgcgcctgcg cttgcacgcg
     1441 cgcccgggtt gagcgagggt ctcgagccag cgcgattgca atcgttcggg cgtgggagac
     1501 atcctacggg ttggtcgcct cttggctgct agccgagcac cagtccaagc aatagcttga
     1561 ctagctgagc cttccaacgg cgttctaccc tactcgacgt cgcgtcgacc ttcgtcgatc
     1621 acatgcaggc cgacggtgag aagcagacag tcctagtcga tgtccggcgc gagccgcaga
     1681 ccatcgtccg cctgatcacc aacgaactct cgacggagac caacgatgca gctgggaatg
     1741 atcggtctgg ggcgcatggg cgcgagcatg gtgcgacgcc tgctcaagaa gggccatgaa
     1801 tgcgtggtct tcgacgtgca cggcccggca gtgacggcct cgcagaaaga cggcgctacc
     1861 ggtgcggcat cgcttgccga catggtcgcg aagatgagca agccacgcgc gatctggctg
     1921 atggttcccg cagcagtggt cgaccaggag ctcgcgcaac tcgcgccgct cctcgactcc
     1981 ggcgacatcg tcatcgacgg cggcaactcc tactaccgcg acgacatccg ccgggccgcc
     2041 gagctcggtg ccgcgggcca ccactatgtc gacgtcggca ccagcggcgg cgtcgccggc
     2101 ggcgatcgcg gctactgcct gatgatcggc ggcgaagtcg agatcgtcgc ccacctgacg
     2161 ccgatcttcg ccgcgctcgc gcccggcgtc gatgcggctg cgcgcacgcg tgggcgcagc
     2221 ggcgatgtcg cccctgccga gcagggcttt ctgcattgcg ggccgcacgg cgccggtcac
     2281 ttcgtcaaga tggttcacaa cggcatcgag tacggcgtca tggcggccta tgccgagggc
     2341 ctcaatatcc tgcgcaacgc caacataggt aagctggcgc gcgctgtcga cgccgagacg
     2401 acgccgctgc gcaaccctga gttctatcaa tacgagatga acttgcccga gatcgccgaa
     2461 gtctggcgcc gtggcagcgt gatcggctcg tggctgctcg acctgaccgc cgatgcgctg
     2521 cgcgccgatc cgaagctggc agcctacggc ggccacgttt ccgactcggg cgaagggcgc
     2581 tggacgatcg aggcggcgat cgacgaaggc gtgccgacgc atgtcctgag cgcagccctg
     2641 tacgagcggt tcgcgtcgcg cggcggcgcc gacttcgcca accaggtgct gtcggcaatg
     2701 cgccatgaat tcggcggcca cgtcgaaaag cccgccgagg gctcgccatg agcatggccg
     2761 ccaacgctgg acgaggccag gatgcgccgc actccgacgc gctggtcatc ttcggcttca
     2821 ccggcgacct ggcgaccaag cagatctttc cggcgctcta ccggatggtg aagacagggg
     2881 cgctgaccgt gccggtgatc ggcgtcgcct cgacgagcct gagcgtcgag caggtgcagc
     2941 agcgcgttcg cgacagcatc gaggaccacg gcaagatcga cgacatgccg gcattcgatc
     3001 ggctgctctc gctgctgcgc tacgtcagcg gcgactacaa gcaaccagcg accttcgaag
     3061 cgctgaaggc cgcgctcggc aacgcgcagc ggccggcgca ctacctcgcc attccgcccg
     3121 cgctgttcga gacggtgatc aataccctgg gcgccgtcgg cttggcgaaa ggtgcgcggg
     3181 tcatcgtcga aaagccgttc ggccgcgacc ttgcttcggc catcgagctt ggcgcggtcg
     3241 cgcagtcggt ctttgccgag tcgtcgatct tccggatcga tcactacctc ggcaaggagg
     3301 cgatcatgaa catcctctac ttccgcttcg cgaactcctt tctcgagccg atctggaatc
     3361 gcaaccacgt cgccagcgtg cagatcacgc tggccgaaaa cttcggcatc ggccagcgcg
     3421 gcagcttcta cgagagcgcg gggtgtctgc gcgacgtgat ccagaaccac ctgttccaga
     3481 tcgtcgccct gctggcgatg gagccacccg cgtaccaggg ttatgcggcc gtgcagagcg
     3541 agaaagcggc ggtctttcac ggcatgcgac cggtgaccgc agacgacgtc gtgcgcggtc
     3601 agtacgaggg ctatcgaaac gaaaaggacg tcgctgccga ttccgacgtc gagacgttct
     3661 gcgccttgcg cctgcacatc gactcctggc gttgggccgg cgtgccgtgg tatctgcgtt
     3721 ccgggaagtg cctgccgacc accgcggccg aagtgctcgt gcagctgcag ccgccgccgc
     3781 aggcgctgtt cgacgattcg cgcccccagg gcgggcgcgc caactatgtc cgcttcaagc
     3841 tgcagccgat gtctgcggtc gccctcgcgg cccgggtcaa gcggcccggc aagggctttg
     3901 tcggcgacca gcgcgagctg tacctgtgcg aagaagccct cagcgaaggg tcgacctacg
     3961 agcgcttgct cggcgacgcg atggtcggcg acggcgcgct cttcaccggc caggacgcgg
     4021 tcgaagcggc ctggactgtc gtcgatccgg tcctcgtcgt ccatcacgcc gcgctgccct
     4081 atgcgccggg cagctggggc ccggccgcag ccgacgcgct gatcgccgcc gacggcggct
     4141 ggcacaaccc cgtggccgaa gacgagcatg cgccatgcac gtaaccggcc cactccaatg
     4201 actcccgaag tcgtcgtctt tctcgatgtc gacaacacct tgctcgacaa cgaccggatc
     4261 attgccgacc tgcgtctgca cctcgagcgg gaattcggcg tcgccagctc cgaccgctat
     4321 tgggcgatct tcgagaagct tcgcaccgag ctcggctacg ccgactacct gggcgctctg
     4381 caacgctacc gggcagagat ggatcgaggc gacgccggtg acccgcgcct gctgctcatg
     4441 tcgagcttcc tggtcgacta tccgttcgcc gatcggttgt acccggatgc gctcgaggtc
     4501 gtcgcctgtc tcggcaagct cgggccgacg gtgatcctgt cggacggcga cgtcgtcttc
     4561 cagccgcgca aggtgcagcg ctcgggcctg tgggatgcgg tgggcggtcg ggtgctgatc
     4621 tacatccaca aagagaagat gctcgagcag gtgcaacgac tctacccggc ccgctgctat
     4681 gtcatggtcg acgacaagtt gcgcatcctg gcggcgatgt aagaggtcat gggggaccgc
     4741 ctcgtgacgg tctttccgcg ccagggccac tatgcccatg accccgccgc catcgccacc
     4801 tatcccgttg ccgatctcag cgtcgagcgc atcggcgacc tacttgaatt cgacaccggg
     4861 aagctgctcg gcgccgcgac gaaggagaaa tcatgaaccc caacctgcaa aagcttcacg
     4921 ccctcggcca gagtctctgg ctcgacaaca tcacccgcga gatgctgggc gacggcacga
     4981 tggcaagcta catcgccgag ttctcggtca ccgggctgac ctcgaacccg acgattttcg
     5041 agcatgccat cggcacgggc gacttctacg acgagcagat cgccgagtcg tcgagccggg
     5101 gcaagtctgg cgaagagctg tttttcgagc ttgcgatcag cgatctgagg cgagcggccg
     5161 acctgtttcg cccgatccac gacgcctcgc aaggcgtcga cggctgggtg tcgctggagg
     5221 tgtcgccggt catcgtcaac gacgccgcca agaccaccga ggccgccgcc cgactgagtg
     5281 ccgccgccgc gcggcccaac ctctacatca agatccccgg cacggcagcc ggggtcgagg
     5341 cgatcgaagc atcgatcttc gccggcgtgc cgatcaacgt cacgctgctc ttttcgtgcg
     5401 agcagtacat ggcggcggcg gctgcctacc tgcgcggcat cgagcgccgg ctcgccgccg
     5461 ggctcgatcc gaaggtcgaa tcggtggcgt cgctcttcgt gtcccgatgg gacgtcgcgg
     5521 tgaaggacga agtcccgccc caataccgca atcgtctcgg catcgcgatc gccaagcgca
     5581 cgtacaaggc gtatcgtgac ctgctcgcct cgccacgttg gcaaaagctc gccgcagccg
     5641 gcgcccaccc gcaacggctg ttgtgggcga gcacggggac gaaggatccg gccgcgcgcg
     5701 acacgctcta cgtcgaggcg ctcgccgcac ccgacaccgt cgacacgatt cccgacaaga
     5761 cgctgaaggc atttgccgat cacggcaagg tcgaagccgt gcttgccgtc gacggcggcg
     5821 atgccgaaac ggtgatcgct gagtatcgaa agctgggcat cgacgacgcc gcgctggcac
     5881 tgcgcctgca acaagaaggc gctgactcgt tccagaagtc gtgggacagc ctgctcgccg
     5941 gcatcaaggg caagagcgcg caactggtcg gagcggcagc gaggtgaatt cgccgctcga
     6001 cgcgaccgcc caacgtgcgc ttcgcgccga gctggccgtg aaatagcagc aacccgatgg
     6061 ccacccacat cagccctctg gccggcaagc ccgctccggc atcgtcgctc gttgacatcg
     6121 ccaggctggt caccgcgtac tactcggaag tcccggagcc gtcggtcgcc gcccaacgcg
     6181 tcgccttcgg cacgtcgggc catcgcggct cgtcgttcgc ggtgtcgttc aacgagcggc
     6241 acgtgctcgc gatcacgcag gcgatctgcc aataccgggc caagcagggc atcgacgggc
     6301 cgctctttct cggcatcgac acgcacgcgc tctcgcagcc cgcatgcgcc agcgccctcg
     6361 aagtgctggc cgccaacggc gtcgagacga tgctcgcgac cgacgacgag tacacgccga
     6421 cgcccgccgt ctcgcacgcg atcctggtct acaaccgcgg ccgcacggcg ggtctggccg
     6481 acggcatcgt cgtgaccccg tcgcacaacc cgcccgacaa cggcggcttc aagtacaacc
     6541 cgccgaacgg cggcccggcc ggcaccgaca tcaccggctg gatcgaggcc gcggcgaacg
     6601 gattcctcga gcgggcgatg gacggcgtca agcgggtcgc gttcg
//
LOCUS       DASVHM010000149         2567 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_298628, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000149 DASVHM010000000
VERSION     DASVHM010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298628"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VF308_02910"
     CDS             complement(<1..319)
                     /locus_tag="VF308_02910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013123899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7435632.1"
                     /translation="MAVLSLSNAHLAYGHVALLDHAAFSLDAGERLGLIGRNGVGKSA
                     LLKIIAGFEKLDDGLLQLTQGLRIRYVAQEPVFEPGHSVFEAVSEGVAEAREVRQRYE
                     EHAE"
     gene            complement(336..1295)
                     /gene="gshB"
                     /locus_tag="VF308_02915"
     CDS             complement(336..1295)
                     /gene="gshB"
                     /locus_tag="VF308_02915"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HEX7435633.1"
                     /translation="MKLLFVADPLEEFKTYKDTTYAMLREAAERGHTLFACEARELQW
                     RRGGKVAARLREITLTEDPHTWFAVRHDTGAEAPVALADLDAVVMRKDPPFDSEYFYA
                     THLLEHAEREGARVFNRPAALRDHPEKLAILEFPQFIAPTLVTRDADAIKAFHAEHRD
                     IILKPLDGMGGTGVFRVGPDGLNLGSIVETLNAGGANTVMVQRYLTEIVKGDKRVLVI
                     DGKPVPHALARIPQGSEIRGNLAVGSKGVAQPLGARDREIAEHIGPILAARGLLLVGL
                     DVIGECLTEINVTSPTGFQEITRQTGFDVAKMFLDALESALAG"
     gene            complement(1292..1819)
                     /locus_tag="VF308_02920"
     CDS             complement(1292..1819)
                     /locus_tag="VF308_02920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011797545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042925 - benzoate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0042919 - benzoate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoate/H(+) symporter BenE family transporter"
                     /protein_id="HEX7435634.1"
                     /translation="MLTLRLRDLSLSAATAGFIAVLIGFTSSVAIVFQAATSLGSTPA
                     EISSWMWALGLGMGLCTVLASLWLKKPVMIAWCTPGAALLATAGGAFALNLAAITAAI
                     CMGREAHEGPDRRHMAAVVNGLICCVIGLFGAAAAGMLGAFPRCSAFWGLVAGALALF
                     VQQWRPRTQTDAPPR"
     gene            complement(1878..>2567)
                     /locus_tag="VF308_02925"
     CDS             complement(1878..>2567)
                     /locus_tag="VF308_02925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HEX7435635.1"
                     /translation="WSLCFAATGFFFLVDFVYFSANIVKVFEGGWFPVLIGATMFMLM
                     MTWKQGRNLMSESLRADAIDLDSFLKSVFISPPTRVPGTAVFLVSDHGLTPNALLHNL
                     KHNKVLHETNLFVTVKHHEVPWIPIDRRCEMEPLGHGCWQVMLNFGFKNEPDVPKALA
                     GLREHGCVVEDMETSYFLSRDIVIPTMGGGMADWREKLFAGMHRNAAAAADFLSLPTT
                     RVVELGSKVEI"
BASE COUNT          442 a          858 c          869 g          398 t
ORIGIN      
        1 cctcggcgtg ttcctcgtag cgctggcgca cctcgcgggc ctcggcgaca ccctcgctca
       61 ccgcctcgaa cacgctgtgg ccgggctcga agaccggctc ctgcgccaca tagcggatgc
      121 gcaggccctg ggtcagctgg agcaggccgt cgtcgagctt ttcgaatccc gcgatgatct
      181 tcagcagcgc cgacttgccg acgccgttgc ggccgatcag gccgagccgc tcgcccgcat
      241 cgagcgaaaa cgcggcatgg tcgaggagcg cgacatggcc gtaggcgaga tgcgcattgg
      301 agagggacag aacagccatc gcaacgatca ggaccctagc ccgcgagcgc cgactccagc
      361 gcatcgagaa acatcttcgc cacgtcgaac cctgtctgcc gggtgatctc ctggaacccg
      421 gtcgggctgg tgacattgat ctcggtgagg cattccccga tcacgtcgag accgaccagc
      481 agcaagccgc gggccgccag gatcggaccg atgtgctcgg cgatctcgcg atcgcgcgca
      541 ccgagcggct gcgccacgcc cttgctgccg accgcgaggt tgccgcggat ctcgctgcct
      601 tgcggaatgc gcgcgagcgc gtgcggcacc ggcttgccgt cgatgacgag cacgcgctta
      661 tcgcccttga cgatctcggt caggtaacgc tgcaccatca ccgtgttggc gccgcccgcg
      721 ttcagcgtct cgacaatgct gccgaggttg agcccgtccg ggccgacgcg aaagaccccg
      781 gtgccaccca tgccgtcgag cggcttgagg atgatgtcgc ggtgctcggc gtggaacgcc
      841 ttgatcgcgt ccgcatcgcg cgtcacaagc gtcggcgcga tgaactgcgg gaactcgagg
      901 atcgcgagct tttccggatg gtcgcgcagc gccgccggcc tgttgaagac gcgtgcgcct
      961 tcgcgttcgg cgtgctcgag gaggtgcgtc gcatagaagt actcgctgtc gaacggcgga
     1021 tccttgcgca tcaccacggc gtcgaggtcg gcgagcgcga ccggcgcctc cgcgccggtg
     1081 tcgtgccgca ccgcgaacca ggtgtgcgga tcctcggtca gcgtgatctc gcgcagccgc
     1141 gccgcgacct tgccgccgcg ccgccactgc aactcgcgtg cctcgcaggc gaagagggtg
     1201 tggccgcgct cggccgcctc gcgcagcatc gcgtaggtcg tatccttgta ggtcttgaat
     1261 tcctcgagcg ggtcggcgac aaagagcagt ttcatcgggg tggcgcgtct gtctgtgtgc
     1321 ggggtcgcca ctgttgcaca aaaagcgcga gggcgccggc gacgagcccc cagaacgccg
     1381 agcaacgcgg gaacgcgccc agcatgccgg cggcggcggc gccgaacagg ccgatcacgc
     1441 agcagatcag gccgttgacc accgcggcca tgtggcgccg atccgggcct tcatgggctt
     1501 cgcgccccat gcagatcgcg gccgtgatcg ccgcgaggtt gagcgcgaac gcaccgccgg
     1561 ccgtggccag cagggcggcg ccgggcgtgc accaggcgat catcacgggc tttttcagcc
     1621 agagcgaagc cagcaccgtg cacaagccca tgccgaggcc gagcgcccac atccacgaac
     1681 tgatctcggc tggcgttgag ccgagcgaag tcgcggcctg gaacacgatc gcgaccgaac
     1741 tcgtgaagcc gatcagcacg gcgatgaagc cggccgtcgc ggcggacagg gaaagatcgc
     1801 gcaggcgcag cgtcagcatg cgcaggagga tagcgaccag ggcagggatc gaccgcgctg
     1861 gccggcgcac gggccgctca gatctcgacc ttcgagccga gctcgaccac ccgcgtcgtc
     1921 ggcaggctca ggaagtcggc ggccgcggcg gcgttgcggt gcatgccggc gaagagtttt
     1981 tcgcgccagt cggccatgcc gccgcccatg gtcgggataa cgatgtcgcg cgacaggaag
     2041 tacgaggttt ccatgtcttc gacgacgcag ccatgctcgc gcaacccggc cagcgccttc
     2101 ggcacgtcgg gttcgttctt gaagccgaaa ttgagcatca cctgccagca accgtgaccg
     2161 agcggctcca tttcgcagcg ccggtcgatc ggaatccacg gcacttcgtg gtgcttcacg
     2221 gtgacgaaca gattggtctc gtggagcacc ttgttgtgct tcaggttgtg cagcagcgca
     2281 ttcggggtca gcccatggtc gctgacgagg aagaccgcgg tgcccggcac gcgcgtcggc
     2341 gggctgatga acaccgactt caggaagctg tcgaggtcga tcgcgtcggc gcgcaggctt
     2401 tccgacatca ggttgcggcc ctgcttccag gtcatcatca gcatgaacat cgtggcgccg
     2461 atcagcaccg ggaaccaacc accctcgaag accttgacga tgttggcgct gaagtagacg
     2521 aagtcgacca ggaagaagaa gccggtcgcc gcgaagcaca gcgacca
//
LOCUS       DASVHM010000150         3400 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_588351, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000150 DASVHM010000000
VERSION     DASVHM010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3400
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588351"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            269..412
                     /locus_tag="VF308_02930"
     CDS             269..412
                     /locus_tag="VF308_02930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435636.1"
                     /translation="MQGNDGNTGATGSQGMDGSKGNKGDTGRSGDGTTVVVVRPAASA
                     PTN"
     gene            complement(471..1478)
                     /locus_tag="VF308_02935"
     CDS             complement(471..1478)
                     /locus_tag="VF308_02935"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435637.1"
                     /translation="MPFELESTMDRRRFTSMAAGGLLGLPLGARAQHTGKVWRVGFLS
                     KAARPPDGKAPESLRNALEALGYVEGKDIVYENRWAELRSERLVPLAIELVALRVDLL
                     LAMGGGPARAAQQASSTLPIVVVNAGDMVEVGLVGSLARPGGNLTGINDQSAALSAKR
                     LELLKEVVPTATRVAVLWNADDRGMTLRYQEIERAARVLHIGIDPLGVREPDDFDVAL
                     TAMDRVRPDALMMVTDALTNLNRRRVIDYVATHRIPAIYEFGGLVRGGGLMSYGGDIG
                     ENHKLAATYIARIFKGAKPGDLPIEQPNRYFLFINLKVAQSLGLRIPQSLLLRADEVI
                     E"
     gene            complement(1512..2312)
                     /locus_tag="VF308_02940"
     CDS             complement(1512..2312)
                     /locus_tag="VF308_02940"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007856928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435638.1"
                     /translation="MTALLTVRGITRSFETRQGPPTIALRATDLEVAENDFVTILGPS
                     GCGKSTLLRIVAGLDRPTAGEVLLDGRRIEAPGADRGMVFQSYTLFPWLTVLDNVCFG
                     LRERGLARAEQLEIANGFVAKVGLVGFEHHFPKQLSGGMQQRTAIARALANGPRILLM
                     DEPFGALDHQTRELMQELLLGIWEAERKTVLFVTHDIDEAVFMGSRVVVMSARPGRIK
                     LDRAVPIAHPRHYSVKTTAGFSELKAELTEQVRVEVRAAQGEMAANTG"
     gene            complement(2350..3129)
                     /locus_tag="VF308_02945"
     CDS             complement(2350..3129)
                     /locus_tag="VF308_02945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007865047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7435639.1"
                     /translation="MKPLTPVAATTRLALGIAFFIVFVAGWSLATFGGFVSKTFLADP
                     LTMVRSGWTLLATQGFGWDIAWTVWRVFGGFLIAAVLALPLGVAMGAYKPIEAFFEPF
                     ISFSRYLPATAFIPLLILWAGIGEAQKLALIFIGSFFQLVLMIAVIVGNTRRDLVEAA
                     YTLGVGDRGLIRRVLIPGAAPEIAEVLRMVLGWAWTYVIVAELIGASSGIGHMITDSQ
                     ALLATDQIIFGIIVIGLIGLASDLLFKWLNRRLFPWAQLGR"
BASE COUNT          601 a         1122 c         1133 g          544 t
ORIGIN      
        1 cctgcctaag cttcgttctc actgctcgaa gccattccaa gcgctaccca tcgacacgaa
       61 aggatttcca atgaaccgtt caatatggat tgccgcactg cttgtcccgt tgagtttggc
      121 ggcttgtgac agacccacgg tcgtaaacgc tcctcccacg gtagtcgcgg tgccgggacc
      181 tgcagtcgca gtgccgggac ccgtagtcga ggtgccggga cccgcagtcg cagtgccagg
      241 ccccgctggt ccgcaaggcg caaccggcat gcaaggcaac gatggcaata cgggtgcgac
      301 gggtagccag ggcatggacg gcagcaaagg caacaagggc gatacgggca gatcgggcga
      361 tggcacgacc gttgtggtgg tccggcccgc tgcgtcggcg ccgacgaact gagtgacgta
      421 gcccgggctg gaggcggtgg accggcgcgc ccgagcccga ccttcaacac tcattcgatc
      481 acttcgtcgg ctcgcagaag gagcgactgc ggaatccgca ggccgagcga ctgggcgacc
      541 ttcagattga taaagagaaa gtaccggttc ggctgctcga tcggcagatc gcccggcttc
      601 gcgcccttga agatcctggc gatgtaggta gccgcgagct tgtggttctc gccaatgtcg
      661 ccgccgtacg acatcaggcc gccgccccga accagaccgc cgaattcgta gatggcggga
      721 atccggtgtg tcgccacgta gtcgatgacc cgtcgccggt tcaaattggt cagtgcgtcc
      781 gtcaccatca tcagtgcatc gggccggacg cgatccatcg ccgtcagtgc gacgtcgaag
      841 tcgtccggct cgcgcacgcc gagaggatcg atgccgatgt gcagcacccg ggccgccctt
      901 tcgatctcct ggtaacgcag cgtcataccc cggtcgtctg cattccagag gacggcgacc
      961 cgagttgcag tcggcacgac ttccttcaac agctcgagcc gcttcgcgct cagcgcggcg
     1021 gattgatcgt tgatcccggt caggttgccg ccgggccgcg caagactgcc aacgagcccg
     1081 acttcgacca tgtccccagc gttgacgacg acgatcggaa gggtagaaga ggcttgctgc
     1141 gcggccctcg cgggccctcc tcccatcgcg aggagcagat cgaccctgag cgcgaccagc
     1201 tcaatggcca acggcacgag ccgttcgctc cgcagctcag cccagcggtt ttcgtagacg
     1261 atgtctttgc cctcgacata gccgagagct tccagcgcat tgcgcagtga ttcaggcgcc
     1321 ttgccgtccg gcggccgcgc agccttgctc aggaacccga cgcgccacac cttcccggtg
     1381 tgctgggctc tcgcgccaag cggcaggccg agcaagcccc ctgcggccat gctcgtgaat
     1441 cttcgtcgat ccatggtcga ctctagttca aaaggcatcg tcaagatgag ctcgtcagcc
     1501 cggcgatgag atcagcctgt gttcgcagcc atttccccct gcgccgccct cacctccacc
     1561 ctcacctgct ccgtcagctc cgccttcagc tcgctgaacc ccgccgtcgt cttcaccgag
     1621 tagtgccgcg gatgcgcgat cggcaccgcc cggtcgagct tgatccttcc cggccgcgcg
     1681 ctcatcacga cgacgcgcga gcccatgaag acggcctcgt cgatgtcgtg cgtcacgaag
     1741 agcacggtct tccgctccgc ttcccagatg ccgagcagga gctcctgcat cagctcgcgc
     1801 gtctggtggt cgagcgcgcc gaagggctcg tccatgagca ggatgcgcgg cccgttggcg
     1861 agtgcgcggg cgatcgccgt gcgctgctgc atgccgcccg agagctgctt cggaaagtgg
     1921 tgctcgaagc cgacgaggcc caccttggcg acgaagccgt tcgcgatctc gagctgctcg
     1981 gcgcgcgcca ggccgcgctc gcgcaggccg aagcagacgt tgtcgagcac cgtcagccac
     2041 gggaagaggg tgtagctctg gaacaccatg ccgcgatcag cgcccggcgc ctcgatgcgg
     2101 cggccgtcga gcagcacctc gccggcggtc ggccggtcga gcccggcgac gatgcgcagc
     2161 agcgtgctct tgccgcagcc ggaagggccg aggatggtga cgaaatcgtt ctcggcgact
     2221 tcgagatcgg tggcgcggag ggcgatggtc ggcggtccct ggcgcgtttc gaagctgcgg
     2281 gtgatgccgc ggacggtgag aagcgcggtc atgcgccgag atccttcgct tcgctcagga
     2341 tgacagctgt catcggccga gctgcgccca cgggaagagg cgccggttga gccacttgaa
     2401 tagcaggtcg ctcgccagcc cgatgaggcc gatgacgatg atgccgaaga tgatctggtc
     2461 ggtggcgagc agcgcctggc tgtcggtgat catgtggccg ataccgctcg acgcgccgat
     2521 cagctcggcg acgatcacgt aggtccaggc ccagccgagc accatgcgca gcacctcggc
     2581 gatctcgggc gccgcgcccg ggatcagcac gcgccggatc aggccgcggt cgcccacgcc
     2641 gagcgtgtac gccgcctcga ccaggtcgcg ccgcgtgttg ccgacgatca ccgcgatcat
     2701 cagcacgagc tggaagaagc tgccgatgaa gatgagcgcc agcttctgcg cctcgccgat
     2761 gccggcccag aggatgagga gcggaatgaa ggcggtcgcc ggcaggtagc gcgagaagct
     2821 gatgaagggc tcgaagaacg cctcgatcgg cttgtaggcg cccatcgcca cgccgagcgg
     2881 cagcgccagc acggcggcga tgagaaagcc gccgaagacg cgccagaccg tccaggcgat
     2941 gtcccagccg aagccctgcg tcgcgagcag cgtccagccc gagcgcacca tcgtcagcgg
     3001 gtcggcgagg aaggtcttcg agacgaagcc gccgaaggtc gcgagcgacc agccggcgac
     3061 gaagacgatg aagaaggcga tgccgagggc gaggcgcgtt gtcgcggcga caggggtaag
     3121 cggcttcacg atgtcattgc tggcttcacg cgttcctgag cggcatatcg gcctagggcg
     3181 tcgggtggcc gattgcgctc atgtcccccg aagcgctgct gcgcagcgct tctcctccta
     3241 atacttcgct ccatcggcca cccaacaccc taggccggac cgaggctctc gtcgcaaaga
     3301 cgggcggtac aggatcgggg cggtggggcg ttctgtggag cgaagtatta ggaggagaag
     3361 gcggcgacga gccgccttcg ggggacatga gcgcaacaga
//
LOCUS       DASVHM010000151         3613 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_372112, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000151 DASVHM010000000
VERSION     DASVHM010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3613
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372112"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1288
                     /locus_tag="VF308_02950"
     CDS             <1..1288
                     /locus_tag="VF308_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007874860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435640.1"
                     /translation="WSADSKTLTIKLRTDVTFHDGEKLDAAAVKFNLERHKTMAGSNR
                     SGELRPVASVDVVDPATVKLNLSAPFTPILAALADRAGMMVSPKAAKAEGANFGAHPV
                     CSGPFRFVERVAQDKISFERYPNYWNKANIHFDKVVYTPIIDPTVRLANLRSGQFDVI
                     ERVAPSDIDKLKQDKNLKIARITEIGYQGITINVGKSELAQKNPLGRDPRVREAFELS
                     LDRQGIVQVAMDNEATVGNQWVAPTNPFYAKNVPIPKRDVARARALLKEAGVTNPSVT
                     LITPTTSDAQRIALIVQAMARDAGFDVKIQATEFATSLNMADKGDFEAYVLAWSGRPD
                     PDGNLYSFDACKQPLNYAGYCVAEIDELLNKSRSARDPAERRKLYEQIAARVVAKDRP
                     IIYLYHRNWLWAYTAKLAGVRGVPDGLLRVTGLKMN"
     gene            1298..2239
                     /locus_tag="VF308_02955"
     CDS             1298..2239
                     /locus_tag="VF308_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019247679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7435641.1"
                     /translation="MFEFLIRRLAQILPTLLFVSMLIFGLQQLLPGDPAVILAGEERD
                     PNVVAYLRQKLHLDEALPVRYAYWVGGVLRGDLGESVRSQQPVLELIVQKLPVTVELA
                     LLAMAIALVIGIPAGVVSAVGRGSVWDYAANVFALWGLSTPNFWLGILVILLFSVQLG
                     WLPASGYVSPFEDLRANLAAMIMPAFVLGNAIAAVLMRHTRSAMLQVLSADYVRTARA
                     KGLSEPVVVLKHALRNALTPIITLGALELGTLLSGAVLTEQVFTIPGFGKLIVDSVFN
                     RDYAVVQGVVLVTATAYIVLNLLADLAYFAVNPRLRN"
     gene            2271..3128
                     /locus_tag="VF308_02960"
     CDS             2271..3128
                     /locus_tag="VF308_02960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007874856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7435642.1"
                     /translation="MRAPVAEAGPWRRAWRRLKRRRGAMLGLVVVLAFVVLALFAPWI
                     APQDPIETSWSAIRQTPSAVHWFGTDDIGRDVLSRVIWGTRASLLAGVVSVSISLLLG
                     VPIGLAAGFIGGATDALISRITDAFLACPFLILAIALAAFLGPSLTNAMIAIGVSATP
                     IFVRLTRAQVINVKVEDYIEAARAVGNPPLRVALRHVMPNIAAPLIVQATLAVAAAVI
                     AEASLSFLGLGQQPPAPSWGSMLNTAKNYIDNAAWMAIWPGLSIFLLVLSFNLLGDGL
                     RDALDPRQR"
     gene            3205..>3613
                     /locus_tag="VF308_02965"
     CDS             3205..>3613
                     /locus_tag="VF308_02965"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type sigma factor"
                     /protein_id="HEX7435643.1"
                     /translation="MSELTALLAAARHGDQQAAGQAFGLLYDDLRRLARSRLRQHQTM
                     TLLDTTSLVHKSYLKLVGNAALAVEDRHHFFAYASRVMRSVIVDFARARLAERRGGDA
                     DHVVLDTGLSDKLAAPENDVLRVHEALEVLAEAD"
BASE COUNT          539 a         1277 c         1201 g          596 t
ORIGIN      
        1 gtggtcggcc gacagcaaga cgctgacgat caagctgcgc accgacgtca ccttccacga
       61 cggcgagaag ctcgacgcgg cggcggtgaa gttcaacctt gagcgccaca agacgatggc
      121 cggctcgaac cgcagcggcg agctgcggcc ggtcgcgagc gtcgacgtcg tcgacccggc
      181 gacggtgaag ctcaacctct cggcgccgtt cacgccgatc ctggccgcgc tcgccgatcg
      241 cgccggcatg atggtctcgc ccaaggcggc gaaggccgag ggcgcgaact tcggcgcgca
      301 cccggtgtgc tcgggaccgt tcaggttcgt cgagcgggtc gcccaggaca agatctcgtt
      361 cgagcgctat ccgaactact ggaacaaggc caacatccac ttcgacaagg tcgtctacac
      421 gccgatcatc gacccgacgg tgcgtctggc caacctgcgc tcaggccagt tcgacgtcat
      481 cgaacgcgtc gcgccgtcgg acatcgacaa gctcaagcag gacaagaacc tcaagatcgc
      541 gcgcatcacc gagatcggct accagggcat cacgatcaac gtcggcaaga gcgagctcgc
      601 gcagaagaac ccgctcggcc gcgacccgcg cgtgcgcgag gcgttcgagc tctcgctcga
      661 ccggcagggc atcgtgcagg tggcgatgga caacgaggcg accgtcggca accagtgggt
      721 cgcgccgacg aatccgttct atgcgaagaa cgtgccgatt cccaagcgcg acgtcgcccg
      781 cgcacgggcg ctgctgaagg aggccggcgt cacgaacccg agcgtcacgc tgatcacgcc
      841 caccacctcg gacgcgcagc gcatcgcgct gatcgtgcag gcgatggcgc gcgatgccgg
      901 cttcgacgtc aagatccagg cgaccgagtt cgcgacctcg ctcaacatgg ccgacaaggg
      961 cgacttcgag gcctacgtgc tcgcctggag cggccgtccc gatcccgacg gcaacctgta
     1021 cagcttcgac gcctgcaagc agccgctcaa ctacgccggt tattgcgtgg ccgagatcga
     1081 cgagctgctc aacaagtcgc gctcggcgcg agacccggcc gagcgcagga agctctatga
     1141 acagatcgcc gcccgcgtcg tcgcgaagga ccggccgatc atctacctct accaccgcaa
     1201 ctggctctgg gcctacaccg cgaagctcgc cggcgtgcgc ggcgtgcccg acgggctgct
     1261 acgcgtgacg ggcctgaaga tgaactgacg ggcccgcatg ttcgagttcc tgatccggcg
     1321 cctcgcccag atcctgccga cgctgctgtt cgtctcgatg ctgatcttcg ggctgcagca
     1381 gctgctgccc ggggacccgg cggtgatcct cgccggcgag gagcgcgacc cgaacgtcgt
     1441 cgcctacctg cgccagaagc tccatctcga cgaggcgctg ccggtgcgct acgcctactg
     1501 ggtcggcggc gtgctgcgcg gcgatctcgg cgaatcggtg cgcagccagc agccggtgct
     1561 cgagctgatc gtgcagaagc ttccggtcac ggtcgagctc gcgttgctcg cgatggcgat
     1621 cgccctcgtg atcggcatcc cggccggtgt ggtctctgcc gtcggccgcg gcagcgtgtg
     1681 ggactacgcg gccaacgtgt tcgcgttgtg gggcctgtcg acgccgaact tctggctcgg
     1741 catcctggtg atcctgctgt tttcggtgca gctcggctgg ctgccggcgt cgggttacgt
     1801 cagccccttc gaagacctgc gcgcgaacct cgcggcgatg atcatgccgg ccttcgtgct
     1861 cggcaacgcg atcgccgcgg tgctgatgcg ccacacccgc agcgcgatgc tgcaggtgct
     1921 ctcggccgac tacgtgcgca ccgcccgcgc gaagggcctg agcgagcccg tcgtcgtgct
     1981 caagcacgcg ctgcgcaatg cgctgacgcc gatcatcacg ctcggcgcgc tcgagctcgg
     2041 cacgctgctc tcgggcgcgg tgctgaccga acaggtgttc acgatcccgg gcttcggcaa
     2101 gctgatcgtc gactcggtct tcaaccgcga ctacgcggtc gtgcagggcg tcgtgctggt
     2161 cactgcgacg gcgtacatcg tgctcaacct gctcgccgac ctggcctatt tcgcggtcaa
     2221 tccgcggctg cggaactgag gcgatggcgg ccgttctccc cgtccctgtc gtgcgcgcgc
     2281 ccgtggccga agccggcccg tggcgccgtg cgtggcggcg actgaagcgc cgccgcggcg
     2341 cgatgctcgg gctcgtcgtc gtgctcgcct tcgtcgtact cgcccttttc gcaccatgga
     2401 tcgcgccgca ggatccgatc gagacgagct ggagcgcgat ccgccagacg ccgtcggccg
     2461 tgcactggtt cggcaccgac gacatcggcc gcgacgtgct gtcgcgcgtg atctggggca
     2521 cgcgcgcctc gttgctcgcc ggcgtcgtgt cggtctcgat ctcgctgctg ctcggcgtgc
     2581 cgatcggtct ggctgcgggt ttcatcggcg gcgccaccga cgccttgatc tcgcgcatca
     2641 ccgatgcgtt tctcgcctgc cccttcctga tcctcgcgat cgcgttggcc gcgttcctcg
     2701 ggcccagcct caccaacgcg atgatcgcga tcggtgtctc ggccacgccg atcttcgtgc
     2761 gcctgacgcg cgcgcaggtc atcaacgtca aggtcgagga ctacatcgag gcggcgcgcg
     2821 cggtcggcaa cccgccgctg cgcgtcgcgc tgcgccacgt gatgccgaac atcgccgcgc
     2881 cgctgatcgt gcaggccacg ctcgccgtcg ccgctgcggt gattgccgag gccagcctgt
     2941 ccttcctcgg cctcggccag cagccgcccg cgccgagctg gggcagcatg ctcaacaccg
     3001 ccaagaacta catcgacaac gccgcctgga tggcgatctg gccggggctc tcgatcttcc
     3061 tgctggtgct gtcgttcaac ctgctcggcg acggcttgcg cgacgcgctc gatccgcgcc
     3121 agcgctgagg gcgccgggtc gggctcgccg ggtggtgcaa atcacgggta ggcggcagaa
     3181 tcggtgcgac cggatggtct tgtgatgtcg gaactcactg ctctgctggc cgcggcccgg
     3241 cacggggacc agcaggcggc cgggcaggcc ttcggtctgc tctacgacga tctgcgacgg
     3301 ctggcgcgct ccaggctgcg ccagcaccag acgatgaccc ttctggacac cacctcgctg
     3361 gttcacaagt cctacctcaa gctcgtcggc aacgcggcgc ttgcggtgga ggatcggcac
     3421 cacttcttcg cctatgcctc gcgcgtgatg cgctcggtga tcgtcgactt cgcccgcgcc
     3481 cggctggccg agcgccgcgg cggtgacgcc gaccacgtgg tgctcgacac cgggctctcg
     3541 gacaagctcg ccgctcccga aaacgacgtg ctgcgggtgc acgaagcgct cgaagtgctg
     3601 gccgaggccg acg
//
LOCUS       DASVHM010000152         7298 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_732650, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000152 DASVHM010000000
VERSION     DASVHM010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7298
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_732650"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..105)
                     /locus_tag="VF308_02970"
     CDS             complement(<1..105)
                     /locus_tag="VF308_02970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HEX7435644.1"
                     /translation="MSQALHPMLNIAIKAARSAGAIINRASLDLDLLKV"
     gene            196..954
                     /locus_tag="VF308_02975"
     CDS             196..954
                     /locus_tag="VF308_02975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEX7435645.1"
                     /translation="MPQTDPTPFILIGASHPGNVGAAARALKVMGFSELVLVAPRFAD
                     VQGREEAIAMASGATDVLAGARVVDTLAEALDGVTYACATAMTPRDFGPPTWAPRELF
                     ASLAAGAHRVGFVFGSERFGMSNDDVYKCHACLSIPTQAGYGSLNLAQALQLIAYDWR
                     QALGGFEVKPRTIDPELADAAALQGLLAHWQAALVRLGYLDPHTPRKLMFRLNQLANR
                     VELTRDELQILRGVARAIEKGEWRAGGAEKGAAR"
     gene            985..1764
                     /gene="cysE"
                     /locus_tag="VF308_02980"
     CDS             985..1764
                     /gene="cysE"
                     /locus_tag="VF308_02980"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEX7435646.1"
                     /translation="MFQRLREDIACILERDPAARSAWEVLTCYPGLHALLLHRQAHWC
                     RRQGLHWLARFISNLARFLTGIEIHPGATIGRRVFIDHGMGVVVGETAEIGDDCTIYQ
                     GVTLGGTSLAKGMKRHPTLGRGVIVGANSQVLGGFTVGDGARVGSNAVVLREVPPGAT
                     AVGNPARVLHAEVDARREDAAAKMGFSAYGVSQGDDPVSQAMKGLIDNAAGHEHQIAM
                     LWQAIEKLSSRSRELPPAECVPEGAHTTETFDADRLNRLVK"
     gene            complement(1745..2365)
                     /gene="mog"
                     /locus_tag="VF308_02985"
     CDS             complement(1745..2365)
                     /gene="mog"
                     /locus_tag="VF308_02985"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013542459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HEX7435647.1"
                     /translation="MAETVATPSAGLDPVRIGLVSVSDRASRGVYEDKGIPALQAWLQ
                     RALRNPIVWETRLVPDEEALVSAALRDLADTLRCDLVLTTGGTGPAPRDVTPEATLAV
                     ATRTMPGFGEQMRQISLKFVPTAILSRQVAVIRGQALIINLPGQPKSIAETLEGLRDA
                     VPPVPGIFAAVPYCIDLIGGPYIECDEAVCKAFRPKSAQRPTSRAG"
     gene            complement(2358..2843)
                     /gene="yjgA"
                     /locus_tag="VF308_02990"
     CDS             complement(2358..2843)
                     /gene="yjgA"
                     /locus_tag="VF308_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis factor YjgA"
                     /protein_id="HEX7435648.1"
                     /translation="MRPSKTRRKHDSHDLQALGEALIELPQDRLDALPLSETLRDAID
                     QCRHTRSHEGKRRQMQYIGKLMRRTDPEPIRQAVAEMQLGRARDSLALHEAERWRAEL
                     IAGDAAATRWIAAHPSSDVQQLRSLVRSARKDASLAPEKRSGRAYRELFQFIKQQASD
                     G"
     gene            3003..4403
                     /gene="pmbA"
                     /locus_tag="VF308_02995"
     CDS             3003..4403
                     /gene="pmbA"
                     /locus_tag="VF308_02995"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HEX7435649.1"
                     /translation="MSRSVSPPPTASRVFAYTREQFQQLVEDALAQARKLGASDAAVE
                     VSEGVGLSVSVRKGAVENVERNRDKSMGITVYAGQRRGNASTSDFSRAALEQTVRAAH
                     DIARFTAEDSAAGLPDPDDMAIGATALRDLDLFHPWAIDAEAAAEIARRCEAAAFATD
                     PRITNSEGAGVSVQQSHFHAANSRGFAGGYASSRHSISVAPIASIPASGGTDMQRDAW
                     YTSMRSPGELAEPESVGRYAAERALSRLKSRKIKTCEVPVLFESSLAAGLLGSYVQAT
                     SGGALYRKSSFLQDSLGREVLARHIDVHEDPHLPRGKGSAPFDDEGVVTRAREVVREG
                     VVQGYFLSTYSARKLGMRTTGHAGGSHNLTLTSRTTRPEDDLEAMLKKLQRGFFAIEL
                     MGQGVNPVTGDYSRGAAGFWVEGGRIAYPVHEITIAGNLRDMFKRIAAVGADAYTMGS
                     KTTGSVLIERMKIAGL"
     gene            4529..5611
                     /locus_tag="VF308_03000"
     CDS             4529..5611
                     /locus_tag="VF308_03000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007869640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HEX7435650.1"
                     /translation="MERRSFIRKTGLAGILAAGAAPAIVHAQANIRWRLASSFPRSLD
                     TLFGGAETFAKKVGEMTGGKFQISTHAAGELMPAFGVVDGVQGATIEAAHTASYYFFG
                     KDEVFALGCAIPFGLNSRQMTAWMYEGNGLKLMRDFFKGYNIVNFPGGNTGTQMGGWY
                     RKEIKSAADIKGLKFRVGGFAGKVIERMGGVPQNIPGGEIYQALEKGTIDAAEWVGPY
                     DDLKLGFNKVAPNYYYPGWWEGGPQLDILLNIKAFEGLTPEYKAIIESAAAFAHVEMQ
                     AKYDAKNPAALRQLVGSGTKLFRFPKDVMEVAFKEAMGLYSDLSAKNPNWKKIYEDYS
                     AFRREQNLWFRFAEASFDDFMQAQKL"
     gene            complement(5673..>7298)
                     /locus_tag="VF308_03005"
     CDS             complement(5673..>7298)
                     /locus_tag="VF308_03005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HEX7435651.1"
                     /translation="GIFYGLVAVQLGMIHPSFLEILPLRIHGIMQNETLLAVPFFTFM
                     GLILERSGMAEDLLDTIGQLFGPIRGGLAYAVILVGAMLAATTGVVAASVISMGLISL
                     PIMLRYGYDRRLASGVIAASGTLAQIIPPSLVLIILADQLGKSVGDLYKGAFIPGFTL
                     TALYIVYVLVISFVQPKWVPALPREARTIREDDGSPGLRSLGVVVVLSVVAAWAFAKS
                     RPATVATDEVIVTSMCVGVGVAFVFALVNRISRLHLLSRMAERVTFVLIPPLGLIFLV
                     LGTIFLGVATPTEGGAMGATGALAMAVARRRLDLKLLRQAMDSTMKLSCFVLFILIGS
                     TVFSLSFQGVDGPKWVEHLLTGLPGGQLGFLIVVNILIFVLAFFLDFFELSFIVIPLI
                     GPVADKLGIDLVWFGVLLAVNMQTSFMHPPFGFALFYLRSVAPHDDYEDKLTRAPVAK
                     VTTGQIYWGAVPFVLIQILMVGLIIAFPGLVTGGLAKAKAMDLSNIKIEIAPSSGEKI
                     EMDASKLFGPATSASAPASSADPLERAAQGVGR"
BASE COUNT         1259 a         2416 c         2504 g         1119 t
ORIGIN      
        1 gaccttcagc aggtcgagat cgagcgacgc ccgattgatg atcgcccccg cgctgcgcgc
       61 ggccttgatg gcgatgttga gcatgggatg cagggcttgc gacatggggc aatgacggtt
      121 gcgggctggc gctgagaaag agcggggggc gctgccggaa ggcagtgcgg ataatgagaa
      181 ttttacccgt cgtccatgcc tcagaccgat ccgacccctt tcatcctgat cggcgcgagc
      241 cacccgggaa acgtcggcgc ggcggcacgt gcgctgaagg tgatgggatt ttccgaactc
      301 gtgctggtcg cgccgcgctt cgccgatgtg caaggacgcg aagaggcgat cgcgatggcc
      361 agcggcgcca ccgacgtgct cgccggggca cgcgtcgtcg acacgctggc cgaggcgctc
      421 gacggcgtga cctacgcctg cgcgacggcg atgacgccgc gcgacttcgg gccgccgacg
      481 tgggcgccgc gcgagctgtt cgcatcgctc gccgccggcg cgcaccgggt cgggttcgtc
      541 ttcgggtccg agcgcttcgg catgagcaac gacgatgtct acaagtgcca cgcgtgcctc
      601 agtattccga cgcaagccgg gtacggctcg ctcaacctgg cccaggcgtt gcagctgatc
      661 gcctatgact ggcgtcaggc gctcggtggc ttcgaggtga agccgcgcac catcgatccg
      721 gaactcgccg acgccgcggc gctgcagggg ctgctcgcgc actggcaggc ggcgctggtc
      781 cggctcggct atctggatcc gcacacgccc aggaagctga tgttccgtct caaccagttg
      841 gccaatcggg tcgagttgac ccgcgacgag ttgcagatcc tgcgcggcgt ggcacgtgcg
      901 atcgaaaagg gcgagtggcg agccggcgga gcggaaaagg gcgcggcccg ctaaactggc
      961 tcgcatccca cttccgccac gctcatgttc cagcgccttc gggaagacat cgcctgcatc
     1021 ctcgaacgcg atcccgcggc gcgcagtgcc tgggaggtgc tgacctgcta cccggggctg
     1081 cacgcgctgc ttctgcatcg gcaggcgcac tggtgccggc gccagggcct gcattggctg
     1141 gcgcgcttca tttcgaacct tgcgcgcttc ctgacgggca tcgaaatcca ccccggcgcg
     1201 accatcggcc ggcgcgtgtt catcgatcac ggcatgggcg tcgtggtcgg agagaccgcc
     1261 gagattggcg acgactgcac gatctaccag ggtgtgaccc tcggcggaac gtcgctcgcc
     1321 aaaggcatga agcggcatcc gacgctcggg cggggcgtga tcgtcggcgc gaattcgcag
     1381 gtgctcggcg gtttcaccgt cggcgacggc gcgcgggtcg gctcgaacgc ggttgtgttg
     1441 cgcgaagtgc cccccggtgc cacggcggtc ggcaacccgg cgcgcgtgct gcatgccgag
     1501 gtcgacgcgc gccgcgagga cgccgccgcg aagatggggt tctcggccta cggcgtgagc
     1561 cagggcgacg acccggtctc gcaggccatg aaaggcctga tcgacaacgc cgcgggccac
     1621 gagcatcaga tcgcgatgct ctggcaggcg atcgagaagc tgtcgtcgcg gtcgcgcgaa
     1681 ctgccgccgg ccgagtgcgt gccggagggc gcgcacacca ccgagacctt cgatgccgat
     1741 cggctcaacc ggctcgtgaa gtaggccgct gcgccgactt cggccggaac gccttgcaga
     1801 cggcctcgtc gcattcgatg taagggccgc cgatcaggtc gatgcaatag ggcacggcgg
     1861 cgaagatgcc gggcaccggc ggaacggcgt cgcgcagccc ctcgagcgtt tcggcgatcg
     1921 acttcggctg cccgggcaga ttgatgatca gcgcctggcc gcggatcacc gcgacctggc
     1981 gcgagaggat cgcggtcggc acgaacttca ggctgatctg gcgcatctgt tcgccgaagc
     2041 cgggcatcgt ccgtgtcgcc accgcaagcg tcgcctcggg ggtcacgtcg cgcggggccg
     2101 ggccggtgcc gccggtcgtg aggacgaggt cgcagcgcag ggtgtcggcg aggtcgcgca
     2161 aggccgcgct gacgagcgcc tcttcgtcgg gaacgaggcg cgtctcccag acgatcggat
     2221 tgcgcagcgc gcgctgcagc catgcctgca gcgcgggaat gcccttgtct tcgtagacgc
     2281 cgcgcgaggc ccggtcgctg accgagacga ggccgatgcg gaccggatcg agcccggcac
     2341 tcggcgtggc gaccgtctca gccatcgctc gcctgctgtt tgatgaactg gaacaactcg
     2401 cggtaggccc ggccgctgcg tttctcggga gcgagcgagg cgtccttgcg cgcactgcgc
     2461 acgaggctgc gcagctgctg cacgtcgctg gacggatgcg cggcgatcca cctcgttgcg
     2521 gcagcgtcgc cggcgatgag ctcggcgcgc cagcgctcgg cctcatgcag cgcgagcgag
     2581 tcgcgcgcgc ggccgagctg catttcggcg acggcctgcc ggatcggctc cgggtcggtc
     2641 cgccgcatca gcttgccgat gtattgcatc tgccggcgct tgccttcgtg cgagcgggtg
     2701 tgcctgcatt ggtcgatcgc gtcgcgcaac gtctcggaaa gcggcagcgc gtcgagccga
     2761 tcctgcggca attcgatgag cgcctcgccg agcgcctgca aatcgtgcga atcgtgcttg
     2821 cgccgggtct tgctcggccg catcgaaggg atggggccgg ctctcggtcc gcctgcttct
     2881 gaggaactgt cggagggcat gaacgggcgg cgggcggtgc gatcgaaaca gggcgtcgtt
     2941 atcatagccg cgcacttggt ctcgccaagc gcgcgcacca cccctcacac gatccgccta
     3001 gcatgtcccg ttccgtttcg ccgccgccca ccgcatcccg cgtcttcgcg tacacccgcg
     3061 agcagtttca gcagctcgtc gaggacgccc tggcgcaggc gaggaagctc ggcgcgagcg
     3121 acgccgcggt cgaggtgtcg gagggcgtcg gcctctcggt atcggtgcgc aagggcgcgg
     3181 tcgagaacgt cgagcgcaat cgcgacaagt cgatgggcat cacggtgtat gccggccagc
     3241 gccgcggcaa cgcgagcacc tcggacttct cgcgggccgc gctcgagcag accgtgcgcg
     3301 ccgcgcacga catcgcccgc ttcaccgccg aagactcggc ggccggcctg cccgatccgg
     3361 acgacatggc gattggtgcg acggcgctgc gcgacctcga tctgttccat ccgtgggcga
     3421 tcgacgccga agccgcggcc gagatcgcgc ggcgctgcga ggccgccgcg ttcgcgacgg
     3481 acccgcgcat caccaactcc gaaggcgccg gcgtatcggt tcagcagtcg cacttccatg
     3541 ccgccaacag ccgcggcttc gccgggggat acgcgagttc gcgccactcg atctcggtgg
     3601 cgccgatcgc atcgatcccg gcaagcggcg gaaccgatat gcagcgcgac gcctggtaca
     3661 cgtcgatgcg ctcgcccggc gaactcgccg agccggagtc ggtcggacgc tatgccgccg
     3721 agcgcgcgct gtcgcgcctg aagtcgcgca agatcaagac ctgcgaagtg ccggtgctgt
     3781 tcgaatcctc gctcgcggcg gggctgcttg gctcctacgt gcaggcgacc agcggcggcg
     3841 cgctgtaccg caagtcgagc ttcctgcagg acagcctcgg ccgcgaagtg ctggcccgac
     3901 acatcgatgt tcacgaagac ccgcacctgc cgcgcggcaa gggcagcgcc cccttcgacg
     3961 acgaaggcgt ggtcacgcgg gcccgcgaag tggtgcgtga gggcgtcgtg cagggctact
     4021 tcttgtcgac ctattcggcg cgcaagctcg gcatgcgcac gaccggccat gccgggggct
     4081 cgcacaacct cacgttgacg agccggacga cccggcccga ggacgatctc gaggcgatgc
     4141 tgaagaaact gcagcgcggc ttcttcgcga tcgagctgat ggggcagggc gtgaaccccg
     4201 tgaccggcga ctattcgcgc ggtgccgcgg gcttctgggt cgagggcggt cgcatcgcct
     4261 acccggtgca cgagatcacg atcgcaggca acctgcgcga catgttcaag cgcatcgcgg
     4321 cggtcggcgc cgacgcctac acgatgggca gcaagacgac cggctcggtg ctgatcgagc
     4381 gcatgaagat cgcgggcctt tgacgcgggc acgcgcgaac tcgttcgcgc ctcatgccgt
     4441 aacgggtaaa cacgggcgga tccacgatcg gcaactccta gaatccgccg aaaatccgtc
     4501 accccgattt ctcaccggag actgcagcat ggaacgtcgt tccttcattc gcaagaccgg
     4561 cctcgccggc atcctggccg ccggcgccgc accggcgatc gtgcacgccc aggccaacat
     4621 ccgctggcgc ctggcatcga gcttcccgcg ttcgctcgac acgctcttcg gcggtgccga
     4681 gacgttcgcg aagaaggtcg gcgaaatgac cggcggcaag ttccagatct cgacccatgc
     4741 ggccggcgag ctgatgccgg ctttcggcgt cgtcgacggc gtgcagggcg cgaccatcga
     4801 ggccgcgcac accgcgtcgt actatttctt cggcaaggac gaagtgttcg cactcggctg
     4861 cgcaattccc ttcggcctca actcgcgcca gatgaccgcg tggatgtacg aaggcaacgg
     4921 cctcaagctg atgcgcgact tcttcaaggg ctacaacatc gtcaattttc ccggcggcaa
     4981 caccggcacc cagatgggcg gctggtatcg caaggagatc aagtcggccg ccgacatcaa
     5041 gggcctgaag ttccgcgtcg gcggctttgc gggcaaggtg atcgagcgta tgggcggcgt
     5101 gccgcagaac atcccgggcg gcgagatcta ccaggctttg gaaaagggca cgatcgatgc
     5161 agccgagtgg gtcgggccgt acgacgacct gaagctcggt ttcaacaagg tggcgccgaa
     5221 ctactactac ccgggctggt gggaaggtgg cccgcagctc gacatcctgc tcaacatcaa
     5281 ggccttcgaa ggcttgacgc ccgaatacaa ggcgatcatc gaatcggccg cggcgttcgc
     5341 ccacgtcgag atgcaggcca agtacgacgc caagaacccg gccgccctgc gccagttggt
     5401 cggcagcggg accaagctgt tccgcttccc gaaggacgtg atggaggtcg ccttcaagga
     5461 agcgatgggg ctctacagtg acctgtcggc gaagaacccg aactggaaga agatctacga
     5521 agactattcg gccttccgcc gcgaacagaa cctgtggttc cgtttcgccg aggcgagctt
     5581 cgacgacttc atgcaggccc agaaactctg acgcggccgc tttggcctcg aaccccgcgc
     5641 ggcgcgcagc cggcagggtc tttttttgcg ggctatcgac cgacgccctg cgccgcgcgc
     5701 tcgagcggat cggctgacga tgcgggcgcg ctcgcgctcg tggcgggccc gaacagcttg
     5761 gacgcatcca tctcgatctt ctcgccgctg ctcggcgcga tctcgatctt gatgttcgac
     5821 aggtccatcg ccttggcctt ggcgaggccg ccggtgacga ggcctggaaa cgcgatgatg
     5881 aggccgacca tcagaatctg gatcagcacg aacgggaccg caccccagta gatctggccc
     5941 gtggtgacct tggccacggg cgcgcgggtg agcttgtcct cgtagtcgtc gtgcggcgcg
     6001 acgctgcgca ggtagaagag ggcgaagccg aacggcggat gcatgaacga ggtctgcatg
     6061 ttcaccgcga gcagcacgcc gaaccagacc aggtcgatgc cgagcttgtc cgcgactggc
     6121 ccgatcagcg gaatgacgat gaaggacagc tcgaagaaat cgaggaagaa cgcgagcacg
     6181 aagatcagga tgttgacgac gatcaggaag ccgagttggc cgccgggcag gccggtcagc
     6241 aggtgctcga cccacttcgg cccgtcgacg ccctggaacg acaggctgaa gacggtcgat
     6301 ccgatcagga tgaacagcac gaagcacgac agcttcatcg tcgaatccat cgcctggcgc
     6361 agcagcttga gatcgaggcg ccgacgcgcc acggccatgg cgagcgcacc ggtcgcgccc
     6421 atcgcgccgc cttcggtcgg cgtcgcgacg cccaggaaga tcgttccgag cacgagaaag
     6481 atcaggccca agggcgggat cagcacgaac gtgacgcgtt cggccatccg cgacagcaga
     6541 tgcaggcggc tgatccggtt gacgagcgcg aagacgaagg cgacgccgac gcccacgcac
     6601 atcgacgtca cgatcacctc gtccgtggcc acggtcgccg gacgcgactt cgcgaaggcc
     6661 caggcggcca ccaccgacaa caccacgacc acgccgagcg aacgcagccc gggcgagccg
     6721 tcgtcttccc ggatcgtgcg cgcttccctg ggcagcgccg gtacccactt gggctgcacg
     6781 aaactgatca ccagcacgta gacgatgtag agcgcggtca gcgtgaaacc cgggatgaac
     6841 gcccccttgt acaggtcacc cacgctcttg cccaactggt cggccaggat gatcaggacc
     6901 agcgaaggcg gaatgatttg cgccaacgtg cccgaggccg cgatcacgcc gctcgccaag
     6961 cgccggtcgt agccgtagcg cagcatgatc gggagtgaaa tgaggcccat cgagatgacc
     7021 gacgcggcga ccacgcccgt ggtcgcggcg agcatggcac cgacaagaat caccgcgtaa
     7081 gccaggccgc cgcggatcgg accgaacagc tggccgatcg tgtcgagcag gtcttcggcc
     7141 atccccgaac gttcgaggat caggcccatg aaggtgaaga agggcaccgc cagcagcgtc
     7201 tcgttctgca tgatgccgtg gatgcgcagc ggcaggatct cgagaaagct cgggtggatc
     7261 atgccgagct gcaccgcgac caacccgtag aagatgcc
//
LOCUS       DASVHM010000153         3057 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1237275, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000153 DASVHM010000000
VERSION     DASVHM010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3057
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1237275"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1071
                     /locus_tag="VF308_03010"
     CDS             <1..1071
                     /locus_tag="VF308_03010"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7435652.1"
                     /translation="DSAPEQYREQHLEALFVRGLLQRSQGDLPGSIRTYQTAIAERTA
                     FSGAVHRETANLYNSLAITLTAANRLDEALNAYRANLAIYDQLGQSEDLDALVILGNT
                     GTLAFRVGRLREAEQILKTAFEKQRARAGDSAAVAASMGLYGAVLTAQSRDADAIAVL
                     RPAAEMAVKFAGEASPLAIQDRLFLTEALAVSGAHAKAREVAAQNLGFALERFGEAGL
                     LTLRVRLTQARVAFEAGDAAAAYAGFNAVVEPLRKTGRPGQPSLAHALFGCGETLLAQ
                     GRPGAAVAPLREAVALREQLLWPQSWELALARIRLGEALKRSNAPGAGELLNQGLAVL
                     TSQLGDDHPQVQRARRVVAMPV"
     gene            complement(1094..1663)
                     /locus_tag="VF308_03015"
     CDS             complement(1094..1663)
                     /locus_tag="VF308_03015"
                     /inference="COORDINATES: protein motif:HMM:TIGR02999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type sigma factor"
                     /protein_id="HEX7435653.1"
                     /translation="MSDLDAGTPRPAEWDPTLDSEVKATADALLPVFYADLKRIAHRE
                     RAKVGADMTLQTTALVHEAYLKLRGTAKWNDDAHFVRAAAIAMRHALVNHALERLTAK
                     RGQGAVHVPLTEALEVAAASDESLVALDDALELLAKQSLRLAQVVECRYFAGYDEVAT
                     ARALGISERTVRRDWTLARAWLLRELSSA"
     gene            1803..2096
                     /locus_tag="VF308_03020"
     CDS             1803..2096
                     /locus_tag="VF308_03020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435654.1"
                     /translation="MKPNRILGQYTLIACALAATAGVYLPAVAQSNAQFALSRLNRVA
                     LNPQPLPPRVAQLAVAAPLSGAQQRGIIIVGGRNAGRAAPSRALPGFGQKVAP"
     gene            2221..2748
                     /locus_tag="VF308_03025"
     CDS             2221..2748
                     /locus_tag="VF308_03025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435655.1"
                     /translation="MRLERSSLLLVCLGVVLLAACSKPEPPARVASVAAPAAFASVPI
                     APPARHRGKACEMVTQAEMSAILGGAVVAAANDRSSMQTECVYSAATGISPYAELKVE
                     WGSGPAAMTGAAMFARKEPGAVDPLEGLGDQAIQVGPVLMIRTGDDLVTIVFSGVDDV
                     VPKAHRIFEATKARM"
     gene            2750..>3057
                     /locus_tag="VF308_03030"
     CDS             2750..>3057
                     /locus_tag="VF308_03030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435656.1"
                     /translation="MKASRLLAALGFATLGLTAALHSWAGDAVVRIPLVKGLTTIRSV
                     AETQGDYETIRLYTEVTPKGYRFVSSAEVPDAFTKVPQRIEVPRFVPIEDQRSARTMR
                     "
BASE COUNT          457 a         1084 c         1051 g          465 t
ORIGIN      
        1 gacagcgcgc cggagcagta ccgcgaacag cacctggagg cgctgttcgt tcgcggcctg
       61 ctgcagcgca gccagggcga cctgcccgga tcgatccgca cttaccagac cgcgatcgcc
      121 gagcgcaccg cgttttccgg cgccgtgcac cgggagaccg ccaacctcta caactcgctg
      181 gcgatcacgt tgaccgccgc caatcgcctg gacgaagcgc tcaacgccta ccgcgccaac
      241 ctcgccatct acgaccagct ggggcaaagc gaggatctcg acgcgctcgt gattctgggc
      301 aacaccggga cgctggcgtt tcgggtcggg cggctgcgcg aggccgagca gatcctcaag
      361 accgcgttcg aaaagcagcg cgcgcgggcc ggcgactcgg ccgccgtcgc cgcatcgatg
      421 gggctgtacg gcgccgtgct taccgcccag tccagagacg ccgatgcgat cgccgtgctg
      481 cgcccggcgg cagagatggc ggtgaagttc gccggcgagg cgagcccgct cgcgatccag
      541 gaccggctct ttctcaccga agcccttgcg gtgtcgggcg cccacgcgaa ggcgcgcgag
      601 gtcgcggcgc agaacctcgg cttcgcgctc gagcgcttcg gcgaggccgg cctgctgacg
      661 ctgcgcgtgc gcctgaccca ggcccgcgtc gcgttcgaag ccggtgatgc cgcggctgcc
      721 tacgccggct tcaacgccgt ggtcgagccg ctgcgcaaga cgggccggcc cggccagccc
      781 tctctggccc acgctctgtt cggctgcggc gagacgctgc tcgcgcaagg tcggccaggc
      841 gcggccgtgg cgccgctgcg cgaggcggtg gcgctgcgcg agcaactgct gtggccgcag
      901 agctgggagc tggcactggc ccggatccgc ctcggcgaag ccctcaagcg cagcaacgcg
      961 ccgggggcgg gcgaactgct gaaccagggg ctcgcggtcc tcacctcgca actcggcgac
     1021 gaccacccgc aggtgcagcg cgcacggcgc gtggtcgcca tgccggtctg accccgcaac
     1081 ccatggcggg ccgtcaggcg ctgctcagct cgcgcagcag ccaggcgcgc gccagggtcc
     1141 aatcgcgtcg caccgtgcgc tcggagatac cgagcgcacg agccgtggcg acctcgtcgt
     1201 agcctgcgaa ataacggcat tcgacgacct gggccagccg cagcgactgc ttggccagca
     1261 gctccagcgc gtcgtcgagt gcgaccagcg actcgtcgct tgcggcggcc acttcgagcg
     1321 cctcggtgag cggaacatgc actgcgccct ggccgcgctt ggcggtgagc cgctccagcg
     1381 catggttgac cagcgcatgc cgcatcgcga tggctgcggc gcgcacgaag tgcgcatcgt
     1441 cgttccactt cgcggtgccg cgcagcttca ggtaggcctc gtgcaccagc gccgtggtct
     1501 gcagcgtcat gtcggcgccg accttggcgc gctcccggtg cgcgatgcgc ttcaggtcgg
     1561 cgtagaagac cggcagcagg gcgtcggcgg tggccttgac ttcggaatcc agcgtcggat
     1621 cccactctgc gggtcgcggt gttccggcat ccaagtcgct catgactcat cttagcggcg
     1681 cgggcgtggc cggtttcggg ccgggttcct gttcttacag gggagacgac cagaagacga
     1741 aggcagcaaa cccgctgcag cgcgtccagg gcgactctca acccaaccac aaggagtgca
     1801 cgatgaaacc gaaccgaatc ctcggccaat acacgttgat cgcttgcgcg cttgccgcga
     1861 cggcgggcgt ctacctgccc gcagtcgccc agtcgaacgc ccagttcgcc ctgtccagac
     1921 tgaaccgcgt ggcgctcaac ccccagccgc tgccgcccag ggtcgcccag cttgccgtgg
     1981 ccgcgccgct ttccggcgcg cagcagcgcg ggatcatcat cgtcggcggt cgcaacgccg
     2041 gccgtgcggc gccctcgcgc gcgcttccgg gcttcgggca gaaggtggcc ccgtgaactc
     2101 cggacgagcc ttgcgcacgc gggcgtggcc atgctgtgcg acagcgatgc tcacagcaac
     2161 gctgttcggc gcctgagccc ggccgcggcc ttgttttcat tccttccttc ggagaatgcg
     2221 atgcgtctcg aacgatccag tctgcttctc gtctgcctgg gcgtggtgct tctcgccgcc
     2281 tgctcgaagc cggagccccc ggcgcgggtg gcgagtgtcg cagcgcccgc ggcctttgcc
     2341 tcggtgccga tcgcgccgcc ggcacggcat cgcggcaagg cctgcgagat ggtgacccag
     2401 gccgagatgt ctgcgatcct cggcggcgct gtcgtcgcgg ccgcgaacga tcgatcgtcc
     2461 atgcagaccg agtgcgtcta ttcggcggcg accggtatca gcccctatgc cgagctcaag
     2521 gtcgaatggg gctccggccc ggcggcgatg acgggcgcgg ccatgttcgc cagaaaggag
     2581 cccggcgcgg tcgatccgct ggaaggcctc ggcgaccagg cgatccaggt cgggccggtg
     2641 ctgatgatcc gcacgggtga tgacctggtg acgatcgtct tctccggcgt cgacgacgtg
     2701 gtgccgaagg cgcatcggat cttcgaggcc accaaggcga ggatgtgaca tgaaggcctc
     2761 ccgactcctc gccgcactcg gcttcgccac gctcggcctg acggccgcgc tccattcgtg
     2821 ggccggcgat gcggtggtcc ggattccgct cgtgaagggc ctgacgacga tccgctcggt
     2881 cgccgagaca cagggggact acgaaacgat ccgcctctac accgaagtga cgcccaaggg
     2941 ctatcgattc gtcagcagtg cggaggtgcc cgacgccttc accaaggtgc cgcaaagaat
     3001 cgaggttccg cgcttcgtcc cgatcgagga ccagcgcagc gctcgcacga tgcgcag
//
LOCUS       DASVHM010000154         2803 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1165014, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000154 DASVHM010000000
VERSION     DASVHM010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2803
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1165014"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..695)
                     /locus_tag="VF308_03035"
     CDS             complement(108..695)
                     /locus_tag="VF308_03035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020229764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HEX7435657.1"
                     /translation="MDDATTPSIANSAITYGPVAVVLHWLLAVLIAAAFFIGVSMVDL
                     PFSPQRFRFFNWHKWLGIAVLMLSAARLLWRASGHRPPPTPAGMPAWQVAAYRGTHLA
                     FYGMFFVVPLLGWAYTSAVGVPVVFLGWLPLPDFGPRDKALGEDVLKPLHAVASYVLA
                     TLVVVHVAAALKHHYVERDGLLVRMWPWWPSRRRA"
     gene            943..1413
                     /locus_tag="VF308_03040"
     CDS             943..1413
                     /locus_tag="VF308_03040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435658.1"
                     /translation="MPLTKIALYRASLLADNLGVRLCAAAVLVMPSALVFLLPTLAVL
                     GAPDDAALPGVPVHELGGLWALLSFALGVGFAAAWMRIVFTGGRLLRRPGLRRFVTAG
                     LAVGIIALALELTMLAGANSQEDAGWLLFASLAVSVFLLAGTLGQPRTDQLHRI"
     gene            complement(1450..1863)
                     /locus_tag="VF308_03045"
     CDS             complement(1450..1863)
                     /locus_tag="VF308_03045"
                     /inference="COORDINATES: protein motif:HMM:NF016807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BLUF domain-containing protein"
                     /protein_id="HEX7435659.1"
                     /translation="MPAVFQVFYVSRATTAFDNASIQSILQVSRSNNARLRVTGCLLF
                     SGHCFAQLLEGAQPVVTALARKIAADPRHVGVRFLSEAHSAERDYADWAMGYLHDLNL
                     EDDLETLLMIPDRSPVVIADVMERMRPDPVMGALR"
     gene            complement(1947..2198)
                     /locus_tag="VF308_03050"
     CDS             complement(1947..2198)
                     /locus_tag="VF308_03050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435660.1"
                     /translation="MHTSFDQTLPQPSRWDQHGAEYVRSNIDWCARCSKRLVGLNPGL
                     TAEHALDLAHDLSQDDNLRAMSPETVAEDMHQVDLRTDS"
     gene            2389..>2803
                     /locus_tag="VF308_03055"
     CDS             2389..>2803
                     /locus_tag="VF308_03055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006476296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEX7435661.1"
                     /translation="MNAPNDLSRLTPLLEGSVSAEEWQTRVDLAAAYRLVAHFHWDDL
                     VFTHITAKIPGTDHFLINPYGLMFDEITASSLIKIDIAGNVLQETSFPINPAGFVIHS
                     AVHSARHDAQCVMHTHTLNGVAVSAQKNGVLPISQF"
BASE COUNT          441 a          966 c          971 g          425 t
ORIGIN      
        1 ctcgctttgc gccggcacca gccgggccgg cgcgaccgtc tgcgccgctg ccgcgttcgc
       61 gaccaggagc ggcgcgagca gacacgccag cgaacgcggg cacggcctca cgcccgcctc
      121 cggctcggcc accacggcca catgcgaacg agcaggccgt cgcgctcgac gtagtggtgc
      181 ttgagcgcgg cggcgacgtg aacgacgacg agggtggcga gcacgtagga ggcgacggcg
      241 tggagcggct tcagcacgtc ttcgcccagc gccttgtcgc gcggaccgaa atcgggcagc
      301 ggcagccagc cgaggaagac gaccggaacg ccgaccgccg acgtgtacgc ccaaccgagc
      361 agcggcacga cgaagaacat gccgtagaag gcgaggtgcg tgccgcgata ggcggcgacc
      421 tgccacgccg gcatgccggc cggggtcggc ggcggccgat ggccgctcgc gcgccagaga
      481 agacgcgctg ccgacagcat cagcacggcg atgccgagcc acttgtgcca gttgaagaag
      541 cggaatcgct gcggcgagaa cggcaggtcg accatcgaca cgccgatgaa gaaggcggcg
      601 gcgatcagca cggcgagcag ccagtgcaga acgacggcga ccgggccgta ggtgattgcc
      661 gaattcgcaa tggaaggtgt cgttgcgtca tccatgccgg agaaacaggc cgttgcgatc
      721 gacccttggc gaaggagcaa cgacccgatc gattctagac agcgcatcgg cgccgacggc
      781 gtgccgcacg ggcggctttc cctaacgtgc accgcatcgg cgcgacatgg gctttcccga
      841 ggccgtgaac ttcggcgcaa ctccgttcgc ctggcgccgg ccggcaccgc cacggtggag
      901 cgaaacgccg catgatggcg ccgacgcgga tcgggatcgt cgatgcccct gaccaagatc
      961 gcactctatc gggccagtct tctcgccgac aacctcggcg tgcgcctgtg cgcggccgcg
     1021 gtgctggtga tgccgtcggc cctcgtcttc cttctgccga ccctcgccgt gctcggcgcg
     1081 cccgacgacg cggcgctgcc cggcgttccg gttcacgaac tcggcgggct ctgggcgctg
     1141 ctctcgttcg cgctcggcgt cggcttcgcc gcggcgtgga tgcggatcgt cttcaccggc
     1201 ggacggctcc tgcgccgacc gggtctgcgc cgcttcgtca ccgccggcct cgccgtcggc
     1261 atcatcgccc tcgctctcga gctgacgatg ctggcgggcg cgaattcgca ggaagacgcg
     1321 ggctggctac tcttcgcgtc gctcgcggtg agcgtcttcc tgctcgcagg aacgctcggg
     1381 cagcctcgca ccgatcaact acaccgcatc tgacgctcgc gtccgcgcgg cgccgcgcgc
     1441 cgccgaacgt cagcgcagcg cgcccatcac cgggtcgggg cgcatccgct ccatcacgtc
     1501 ggcgatgacg accggcgagc ggtcgggaat catgagcagc gtctcgagat cgtcctcgag
     1561 attgaggtcg tgcagatagc ccatcgccca gtcggcgtag tcgcgctcgg cgctgtgcgc
     1621 ttccgagagg aagcggacgc cgacgtggcg cgggtcggca gcgatcttgc gcgcgagcgc
     1681 ggtcaccacc ggctgcgcgc cctcgagcag ctgggcgaag cagtggccgg aaaagagcag
     1741 gcagccggtg acgcgaagcc gcgcgttgtt ggaccgcgag acctgcagga tcgactggat
     1801 cgacgcgttg tcgaaggcgg tggtcgcgcg gctgacgtag aagacctgga acacagcggg
     1861 catggcggct gggcggcgag aggtggcccg cctgttatcg gcagcgcgtc gcccgtcttg
     1921 agcggcgggc cacggtcgcg ccgcgctcag ctgtcggtgc gcaagtcgac ctggtgcatg
     1981 tcctcggcga cggtctccgg gctcatcgcg cgcaggttgt cgtcctggct gagatcgtgg
     2041 gccaggtcga gggcatgctc ggcggtcagc cccggattga ggccgacgag gcgcttcgag
     2101 cagcgcgcgc accagtcgat attcgagcgc acgtactccg cgccgtgctg gtcccagcgc
     2161 gagggctgcg ggagggtctg atcgaacgag gtgtgcatcc ttgcgtctcg gcggtggaga
     2221 agaatcgcaa gtgtcgcgtg ccaccgccgg cgcggccggc gctcgccccg ccgttcgtcc
     2281 gccgatcgct gtaacacggg cgagaatcgt gaagtgttcg gcgcttcgcc ggccgagcct
     2341 tgctcgtgga tactttcgct tccgcccgcc cttttgccgg agcccgccat gaatgcaccg
     2401 aacgatcttt cccggctgac gccgctgctc gaaggcagcg tctcggccga ggagtggcag
     2461 acgcgcgtcg acctcgccgc cgcctaccgc ctggtcgccc acttccactg ggacgacctc
     2521 gtcttcaccc atatcacggc gaagattccc ggcaccgatc atttcctgat caatccctac
     2581 gggctgatgt tcgacgagat caccgcctcg agcctgatca agatcgacat cgccggcaac
     2641 gtgctgcagg aaacgagctt cccgatcaat ccggccggct tcgtgatcca cagcgccgtg
     2701 cactcggcac gtcacgacgc gcagtgcgtg atgcacaccc acaccctgaa cggcgtcgcg
     2761 gtctcggccc agaagaacgg cgtgctgccg atctcgcagt tct
//
LOCUS       DASVHM010000155         1511 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1310368, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000155 DASVHM010000000
VERSION     DASVHM010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1310368"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..602)
                     /locus_tag="VF308_03060"
     CDS             complement(<1..602)
                     /locus_tag="VF308_03060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019655791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX7435662.1"
                     /translation="MLLLAACVAGPDYRTPVLDLPVAWKVEAPWRQGTPDDSAAKGPW
                     WQRFADPQLDALEQQALAASPTLVVAAARLTQARAVVGATSAALLPQLNLSTRAARQR
                     ISANRPLSSYASPNFSTVQNDYTAALGVGYEVDLAGRVRRSIEGVQASAEQSAADLEN
                     TRLVLTADLATNYFSLRATDVELDVLARSIALQRRALELIS"
     gene            complement(635..>1511)
                     /locus_tag="VF308_03065"
     CDS             complement(635..>1511)
                     /locus_tag="VF308_03065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX7435663.1"
                     /translation="LAEIESPEVDQQLSQAVAARQQAASSLDLAKSTVARWEGLRKQD
                     VVSQQELDERRSGVAQATANLAAAEANVQRLRQLEGFKRVVAPFAGVITRRNVDVGDL
                     IDAGGGAGRTLFQLAQTDPLRVYVNVPQAYAQLVKPGQPVVVTQAELRGQKFKGQVAR
                     TSASIDTSTRTMQVEIALPNREGTLLPGAYVQVALPLAASQTLAVPTNALLFRGDGTR
                     VAVVDAQGRIHLRSVVIGRNLGESFEVLDGVTARDRLVLNPSDSLTEGDAVALAPAGQ
                     EKPAGRDPAAAKGAP"
BASE COUNT          217 a          519 c          550 g          225 t
ORIGIN      
        1 gagatcagct cgagcgcccg gcgctgcagt gcgatcgagc gcgccagcac gtcgagttcg
       61 acatcggtgg cacgcaggct gaagtagttg gtcgcgagat cggccgtgag aacgaggcgc
      121 gtgttctcca gatcggcagc cgactgttcg gccgaggcct gcacgccttc aatcgagcgc
      181 cgcacccgcc cggcgaggtc gacctcgtag ccgacgccga gcgcagcggt gtaatcgttc
      241 tgcaccgtcg agaaattcgg cgaggcgtag ctgctcagcg gccgattcgc cgaaatgcgc
      301 tggcgcgcag cgcgggtgct cagattcagc tgcggcaaga gcgccgccga ggtcgcaccg
      361 acgacggcgc gcgcctgggt caggcgggcg gcggcgacca cgagcgtcgg actcgccgcc
      421 agcgcctgct gctcgagcgc atcgagctgc gggtcggcga agcgttgcca ccaggggccc
      481 ttggcggcgc tgtcgtccgg cgtgccttgg cgccacggcg cctcgacctt ccaggcgacc
      541 ggcaggtcga gcacgggcgt gcggtagtca gggccggcga cgcaggcggc gagcagcagc
      601 atgcaggcaa ggaccgccag ggggcgcgtc gtcttcaagg agcgcccttg gctgccgcgg
      661 ggtcgcgccc ggcgggcttc tcttggcccg caggtgcgag cgcaacggcg tcaccctcgg
      721 tgagcgaatc ggacgggttc aggaccagcc gatcgcgtgc ggtcacgccg tcgagcacct
      781 cgaaggactc gccgagattg cggccgatga cgacgctgcg cagatggatc cggccctgcg
      841 cgtcgacgac ggccacgcgc gtgccgtcgc cacggaaaag cagcgcattg gtcggcaccg
      901 ccagcgtctg gctcgccgcc agcggcagcg cgacctgcac atacgcgccg ggaagcagcg
      961 tgccctcgcg attgggcagc gcgatctcga cctgcatcgt gcgcgtgctc gtgtcgatcg
     1021 aggccgaggt gcgggccacc tggcccttga atttctgtcc gcgcagctcg gcctgtgtga
     1081 cgacgaccgg ctgccccggc ttgacgagct gcgcatacgc ctgcggcacg ttgacgtaga
     1141 cgcgcaaggg atcggtctgg gcgagctgga acaacgtgcg cccggccccg ccgccggcgt
     1201 cgatcaggtc accgacatcg acgttgcggc gcgtgatcac gcctgcgaac ggtgcgacaa
     1261 cgcgcttgaa gccttcgagc tggcgcagcc gctgcacgtt cgcttcggcc gccgccaggt
     1321 tcgcggtggc ctgggcgact ccgctgcggc gttcgtcgag ctcttgctgc gagaccacgt
     1381 cctgcttgcg cagtccttcc cagcgcgcga cggtgctctt cgcgagatcg aggctcgagg
     1441 ccgcctgctg gcgcgccgcg acggcctgcg acagttgctg gtcgacttcc ggcgactcga
     1501 tctcggcgag c
//
LOCUS       DASVHM010000156         3191 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_10941, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000156 DASVHM010000000
VERSION     DASVHM010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10941"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..766
                     /gene="tgt"
                     /locus_tag="VF308_03070"
     CDS             <1..766
                     /gene="tgt"
                     /locus_tag="VF308_03070"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011799750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEX7435664.1"
                     /translation="LLTPEISMQIQRVLGSDIAMQFDECTAYETQGHRTTEDEARTSM
                     ELSLRWARRCHGEFVRLENPNALFGIVQGGMFEGLREESIASLAELDLPGYAIGGVSV
                     GEPKEEMQRIVAHTPHRLPAAKPRYLMGVGTPEDIVEGVGAGVDMFDCVMPTRNARNG
                     HLFTRFGDLKIRNSRHRADERPLDPTCACYACAGFSRAYLHHLDRCGEMLGAMLASIH
                     NLHYYLNLMREIRAALEAGSFESWARRFREDRTRGI"
     gene            841..1167
                     /locus_tag="VF308_03075"
     CDS             841..1167
                     /locus_tag="VF308_03075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006296723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEX7435665.1"
                     /translation="MPQITYIHADGSRRTVTVAPGANVMRTAIESDIEGIVAECGGAA
                     ACATCHVYVEPEFARRFARPTEIEDDMLEGTASERRPESRLSCQLNMVPGLDELVVRI
                     PPVQVL"
     gene            1167..2411
                     /locus_tag="VF308_03080"
     CDS             1167..2411
                     /locus_tag="VF308_03080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7435666.1"
                     /translation="MLGAESTVVIVGAGQAGFQTAASLRELGYEGRVVLVGDEASLPY
                     QRPPLSKAHLKEDAQDAQLHFRPDTFFPDRRIELRAPERVTAIDRAAHRVALASGESL
                     QYDHLVLATGTRPRRPDWPGMELRGVQLLRTVEDARQIRALLSTAKKVVIVGAGFIGL
                     EVAATARAAGLHVSVIEFADRPLKRALSREMAAHLQRAHASRGVEFLMQTSVATIEGA
                     QGRVTGVTTRDGRHLEADLVLIGIGAQPDTELAEAAGLPVDDGVVVDAHLVTSDPAIS
                     AIGDCARYPSVHHPGAVRLESVQNSVDHARAVAARLTGKPAPYDKLPWFWSDQGDLRV
                     QMCGLAEDSDDVVLRGNPESGRFSVLRFCGDRLTAVETVNNPADHMALRKLLAGGGSL
                     SREQAADTAFKLNSLLTGAKGS"
     gene            2476..>3191
                     /locus_tag="VF308_03085"
     CDS             2476..>3191
                     /locus_tag="VF308_03085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003806915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX7435667.1"
                     /translation="MYKDATLYIGGRFLEPEGRKLQDILNPADNSVVGKLPHATRADL
                     DAALVAAQAAFEKWRFSSPIERSKILRKVAELIRERRDDIARDITLDQGKPLAEARQE
                     VTSCAEHAEWHAEECRRIYGRVIPARLPNVRQLVVRQPVGVCVAFTPWNFPFNQAIRK
                     IVAAIGAGCTMILKGPEDSPSAVMALARLFHDAGLPPGCLNLVWGVPAEVSDYLIRSP
                     LVRKVSFTGSVAVGKQLAALA"
BASE COUNT          502 a         1151 c         1064 g          474 t
ORIGIN      
        1 gttgcttacg cccgaaatca gcatgcagat ccagcgcgtg ctcggcagcg acatcgcgat
       61 gcagttcgac gagtgcaccg cctatgaaac ccaaggccac cgcaccaccg aggacgaagc
      121 gcgcacgtcg atggagttga gcctgcgctg ggcccggcgc tgccacggcg agttcgtgcg
      181 cctcgagaac ccgaacgcgc tcttcggcat cgtccagggc ggcatgttcg agggcctgcg
      241 cgaggagtcg atcgcgagtc ttgccgagct cgatctgccg ggctacgcga tcggcggcgt
      301 cagcgtcggc gaacccaagg aggagatgca gcgcatcgtc gcgcacacgc cgcaccgcct
      361 ccccgcggcg aagccgcgct acctgatggg cgtcggcaca cccgaagaca tcgtcgaggg
      421 cgtcggcgcc ggcgtcgaca tgttcgactg cgtgatgccg acgcgcaatg cgcgcaacgg
      481 tcatctcttc acgcgcttcg gtgacctgaa gatccgcaac tcgcgtcatc gcgccgacga
      541 gcgcccgctc gacccgacct gcgcctgcta tgcctgcgcc ggcttctcgc gggcctacct
      601 gcatcacctc gatcgctgcg gcgagatgct cggcgcgatg ctcgccagca tccacaacct
      661 gcactactac ctgaacctga tgcgcgagat ccgcgcggcg ctcgaagccg gcagcttcga
      721 gtcctgggcg cggcgcttcc gcgaagaccg gacgcgcggg atctgaggcg gctgcgtcgc
      781 tggcgcggcg gggcgcccgc ggcagcggcc ggataatggc cgtggaccct cgagacgact
      841 atgccgcaga tcacttacat ccacgccgac ggctcgcgcc ggaccgtcac cgtcgcgccc
      901 ggcgccaacg tgatgcgcac cgcgatcgag agcgacatcg aaggcatcgt cgcggagtgc
      961 ggcggcgccg ccgcgtgcgc gacctgccat gtctacgtcg aaccggagtt cgctcgtcgc
     1021 tttgcgcggc ccacggaaat cgaggatgac atgctcgagg gcaccgcgtc cgaacgccga
     1081 cccgagagcc gcctgagctg ccagctcaac atggtgcccg gcctcgacga actcgtcgtc
     1141 cgcatcccac cggtgcaggt gctctgatgc tgggcgccga gtcgaccgtc gtcatcgtcg
     1201 gtgcggggca ggccgggttc cagaccgcgg cgtcgctgcg cgagctcggc tacgagggcc
     1261 gcgtcgtgct ggtcggcgac gaggccagcc tgccgtatca gcggccgccg ctgtcgaagg
     1321 cgcatctgaa ggaggacgcg caggacgcgc aattgcactt ccgccccgat accttctttc
     1381 ccgatcgccg catcgagctg cgcgcgcccg agcgcgtgac cgccatcgat cgcgctgcgc
     1441 atcgcgtcgc cctcgcctcg ggcgagagcc tgcaatacga ccatctcgtg ctcgcgaccg
     1501 gcacccggcc gcgccggccc gactggccgg gcatggagtt gcgtggcgtt caactgctgc
     1561 gcacggtcga ggacgcgcgc cagatccgcg cgctgctgtc gactgcgaag aaggtcgtga
     1621 tcgtcggcgc cggattcatc ggcctcgaag tcgcggccac cgcccgcgcc gcgggcctgc
     1681 acgtgtcggt gatcgaattc gcggaccgac cgctcaagcg cgccctgtcg cgcgagatgg
     1741 cggcgcactt gcagcgcgcg catgcgagcc gcggcgtcga gttcctgatg cagacctcgg
     1801 tcgcgacgat cgaaggcgcg caaggccggg tcaccggcgt gacgacgcgc gacggccgac
     1861 acctcgaggc cgacctggtc cttatcggca tcggcgcgca gcccgacacc gagctggccg
     1921 aagcggcggg ccttccggtc gacgacggcg tcgtcgtcga tgcgcatctg gtgacgagcg
     1981 acccggccat ttccgcgatc ggcgattgcg cgcgctaccc gagcgtgcat cacccaggcg
     2041 ccgtgcggct cgagtcggtc cagaactcgg tcgaccacgc tcgcgccgtc gccgcccgcc
     2101 tgaccggcaa acccgcgccc tacgacaagc tgccgtggtt ctggagcgac cagggcgacc
     2161 tgcgcgtgca gatgtgcggc ctggccgagg acagcgacga cgtcgtgctg cgcggcaacc
     2221 ccgagagcgg gcgcttctcg gtgctgcgct tttgcggcga tcggttgacc gcggtcgaga
     2281 cggtgaacaa tccggccgat cacatggcgc tgcgcaagct gctcgccggc ggcggttcgc
     2341 tgagccgcga gcaggcggca gacaccgcgt tcaagttgaa cagccttctg accggcgcga
     2401 aaggaagctg acgaaagtca tatccttcgg ccacttgccc gatcgctccc gcaatcactt
     2461 catatcggaa ccgacatgta caaagacgca accctctaca tcggcggccg cttcctcgag
     2521 cccgagggcc gcaagctcca ggacatcctg aacccggccg acaacagcgt cgtcggcaaa
     2581 ctcccccacg cgactcgcgc agacctcgac gccgccctcg tcgcggcgca ggcggccttc
     2641 gagaagtggc gcttctcgtc gccgatcgag cgctcgaaga tcctgcgcaa ggtcgccgaa
     2701 ctgatccgcg aacggcgcga cgacatcgcc cgcgacatca cgctcgacca gggcaagccg
     2761 ctcgccgagg cgcgccagga agtgacctcg tgcgccgagc atgccgagtg gcacgccgag
     2821 gagtgccgac gcatctacgg ccgcgtgatc ccggcgcgcc tgccgaacgt gcgccagctc
     2881 gtcgtgcgcc agccggtcgg cgtgtgcgtt gccttcacgc catggaactt cccgttcaac
     2941 caggcgatcc gcaagatcgt cgcggccatc ggcgccggct gcacgatgat cttgaagggc
     3001 cccgaggact cgccgagcgc ggtgatggcg ctcgcccgcc tgttccatga cgcgggcctg
     3061 ccacccggtt gcctgaacct ggtctggggc gtgcccgccg aggtctccga ctacctgatc
     3121 cgttcgccgc tcgtgcgcaa ggtgtcgttc accggttcgg tcgctgtcgg caagcagctc
     3181 gcggcgctcg c
//
LOCUS       DASVHM010000157         2982 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_660705, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000157 DASVHM010000000
VERSION     DASVHM010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2982
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_660705"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..705)
                     /locus_tag="VF308_03090"
     CDS             complement(46..705)
                     /locus_tag="VF308_03090"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEX7435668.1"
                     /translation="MGDFHDAATMGALQIFHLDDHCLVALKPSGLLSVPGRGAHLQDC
                     LASRVQACHPDALVVHRLDMATSGLMVFARGPDAQRRLNDSFARREVTKTYVAVVEGS
                     VAEDAGEIDLPLRADWPNRPMQMIDREHGKASLTRYRVLAREPTGRATRVELQPVTGR
                     AHQLRVHMLALGHPILGDALYAPALVQVAASRLLLHAAGLRFAHPASGEAVFVESAAP
                     F"
     gene            complement(741..1367)
                     /locus_tag="VF308_03095"
     CDS             complement(741..1367)
                     /locus_tag="VF308_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006298571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epimerase"
                     /protein_id="HEX7435669.1"
                     /translation="MGQALLKLLLDSDAYRDVTVLARRVPPGIAPQPKLQLRTVDFEH
                     LPEPFPAVDDVYIALGTTIKVAGSQAAFRQIDFDLVVGLARAARSAGATRLAVVSALG
                     ADVRSRVFYNRVKGDMQAAVGQLGYESVVIAQPSLLIGDRAALGQPLRSGEVLATRLL
                     GPFMGLVPKGVRPIGANDVAAAMVAATLAAERGVRILSSGQMQHAARP"
     gene            complement(1445..2824)
                     /locus_tag="VF308_03100"
     CDS             complement(1445..2824)
                     /locus_tag="VF308_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX7435670.1"
                     /translation="MSFDTLGLAEPLLRAVHEQGYTVPTPIQAQAIPAVLSGGDVMGG
                     AQTGTGKTAGFVLPMLHRLMAKAAVRDAKGRLPIRALILTPTRELAAQVEESVRTYGK
                     YSKLTSMVMFGGVGMQPQIDKLRRGVDILVATPGRLLDHHQQRTLDLSHVEIFVLDEA
                     DRMLDMGFIHDIKKVLAFLPAQKQSLLFSATFSDEIKDLADRLLNKPVLIEVARRNQT
                     ADNIAQKVHPVGREMKKDLLTHLIKDNDWHQVLVFTRMKHGANRLVEHLLKQGVSAMA
                     IHGNKSQTARTKALADFKKGELTVLVATDIAARGIDIDQLPHVVNFEMPNVPEDYVHR
                     IGRTGRAGAMGEAVSLVCVDENGFLRDIERLIKHEIPKQVVPGFGPPAHERPEPIVLG
                     RMVIGEGAGRGGMRHHANSGRGGSGGGHSNRGANNSRSAAPARPASGPRPEGRHDGRP
                     PVRLTQPKR"
BASE COUNT          453 a          966 c         1074 g          489 t
ORIGIN      
        1 aaggtaaagc gcggcgacgc gtgagatgtg cggggcgctc gttgactaga acggcgcagc
       61 gctctcaacg aacaccgcct cgccgctggc ggggtgcgca aagcgcagtc cggcggcgtg
      121 cagcagcagc cggctcgcgg ccacctgcac gagtgccggt gcgtagagcg cgtcgcccag
      181 gatcggatgg ccgagcgcga gcatgtgaac gcgcagctga tgcgctcggc cggtgaccgg
      241 ctgcaactcg acgcgtgtcg cccgaccggt cggctcgcgg gcgagcaccc gatagcgtgt
      301 gagcgatgcc ttgccgtgct cgcggtcgat catctgcatc ggccgattcg gccagtcggc
      361 gcgcagcggc aggtcgatct cgccggcgtc ctcggcgacg ctgccctcga ccactgcgac
      421 gtaggtcttt gtcacctcgc gccgcgcgaa cgaatcgttc agccggcgct gggcgtctgg
      481 cccgcgggcg aagaccatca ggcccgaagt ggccatgtcg aggcgatgca cgacgagcgc
      541 atcgggatgg caggcctgca cgcgcgatgc caggcaatcc tgcaaatgcg cgccgcgccc
      601 cggcaccgaa agcagcccgc tcggcttgag cgcgacgagg cagtgatcgt cgaggtggaa
      661 gatctgaagc gctcccatcg tcgcggcgtc gtgaaagtcg cccatcggca agtcggcgcg
      721 caggcggctg cgcgctgggg tcagggtcga gccgcgtgct gcatctggcc ggaactcagg
      781 attcggacgc cccgctcggc ggcaagcgtt gccgccacca tcgcggcggc aacgtcgttc
      841 gcgccgatcg gccgcacgcc ctttggcacg agccccatga acggtcccag gagccgcgtg
      901 gcgagaacct cgccgctgcg cagcggctgg ccgagcgccg cccggtcgcc gatcagcagc
      961 gagggttgcg cgatcacgac cgactcgtag ccgagctgcc cgacggcggc ctgcatgtcg
     1021 cctttgacgc gattgtagaa gacgcgcgac ctcacatcgg cgccgagcgc cgagacgacc
     1081 gcgagccggg tcgcgccggc cgagcgcgcg gcccgtgcaa gtccgacgac gaggtcgaaa
     1141 tcgatctgcc ggaacgccgc ttgcgatccg gccaccttga tcgtcgtgcc gagcgcgatg
     1201 tagacgtcgt cgacggccgg aaaaggctcg ggcaagtgct cgaagtcgac ggttcgcagt
     1261 tgcagcttgg gctgcggcgc gatgccgggc ggcacgcggc gcgcgagaac ggtcacgtcg
     1321 cgatacgcgt cgctgtcgag cagcagcttg agcagtgcct gccccaccag gccagtggcc
     1381 ccggcgagca gagcgcttcg ggaggaggat gtcgtcttcc gcatgcccga ctccggcgcg
     1441 ccgatcagcg cttgggttgc gtcagtcgca ccggtggccg gccgtcatgc cgcccttcgg
     1501 ggcgcggacc gctcgccggg cgagccgggg cggccgagcg cgagttgttg gcgccgcgat
     1561 tcgagtgccc accgccactg ccgccccggc cactgttggc gtgatggcgc atgccgccgc
     1621 ggccggcgcc ttcgccgatc accatgcggc cgagcacgat gggctccggc ctttcatggg
     1681 ccggcggccc gaaaccgggc accacttgtt tcgggatttc gtgcttgatg agccgctcga
     1741 tgtcgcgcag gaagccgttc tcgtcgacgc agactagcga caccgcctcg cccatcgcgc
     1801 cggcgcggcc ggtgcggccg atacggtgca catagtcctc gggcacgttc ggcatctcga
     1861 aattgacgac gtgcggcagc tggtcgatgt cgatgccgcg cgccgcgatg tcggtcgcca
     1921 cgagcaccgt cagctcgccc tttttgaaat ccgcgagcgc cttggtgcgc gcggtctggc
     1981 tcttgttgcc gtggatcgcc atcgcgctga cgccttgctt caacaggtgt tcgacgaggc
     2041 ggttcgcgcc gtgcttcatg cgcgtgaaga cgagaacctg gtgccagtcg ttgtccttga
     2101 tgaggtgcgt gagcaggtcc ttcttcattt cgcggcccac cgggtggacc ttctgcgcga
     2161 tgttgtcggc ggtctggttg cgccgcgcca cctcgatcag cacgggcttg ttcagcaggc
     2221 ggtcggcgag atccttgatc tcgtcgctga acgtggcgga aaagagcagg ctctgctttt
     2281 gtgccggtag gaaggcgagc accttcttga tgtcatggat gaagcccatg tcgagcatgc
     2341 gatcggcctc gtcgagaacg aagatctcga catggctcag gtcgagcgtg cgctgctggt
     2401 ggtggtcgag gagccggccc ggcgtcgcga cgaggatgtc gacgccgcgc cgcagcttgt
     2461 cgatctgcgg ctgcatgccg acgccgccga acatcaccat gctggtgagt ttcgagtatt
     2521 ttccgtaggt gcgcacgctt tcctcgacct gcgcggcgag ctcgcgcgtg ggggtgagga
     2581 tgagggcgcg gatcggcagc cgtcctttcg cgtcgcgcac cgcggctttg gccatcagcc
     2641 ggtgcagcat cggcagaacg aagccggcgg ttttgccggt tccggtctgg gcgccgccca
     2701 tcacgtcgcc gccggaaagc acggcgggaa tggcctgtgc ctggatcggg gtgggaacgg
     2761 tgtagccctg ttcgtgaacg gcgcgcagca ggggctcggc aaggccgaga gtgtcgaagg
     2821 acatgggatt ccaaagagaa gatcggcctg tcgctcgggt aaacgagcgc cagtcgggag
     2881 gcagacgggg gagagggtcg gaatcgactg cggcagcagt gactggagct gagctgccgc
     2941 agggcgcatt gtaagacccc tgcgcttttt cacgaccgag gc
//
LOCUS       DASVHM010000158         2025 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1237454, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000158 DASVHM010000000
VERSION     DASVHM010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1237454"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            33..413
                     /gene="erpA"
                     /locus_tag="VF308_03105"
     CDS             33..413
                     /gene="erpA"
                     /locus_tag="VF308_03105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013543663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HEX7435671.1"
                     /translation="MSAVAEQSQSQPEADAPPVPLIFTDSAAAKVKELVDEEGNPELK
                     LRVFVQGGGCSGFQYGFTFDELVNDDDTQMAKNGVTLLIDAMSLQYLAGAEIDYKDDL
                     QGAQFVIKNPNATTTCGCGSSFSA"
     gene            complement(464..1594)
                     /locus_tag="VF308_03110"
     CDS             complement(464..1594)
                     /locus_tag="VF308_03110"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HEX7435672.1"
                     /translation="MTLYIGLMSGTSLDGVDGVLVSFGSGAEAPMRVLAHAHRPFAAP
                     LQAELLALNTSGADELHRAALAANALTRIYAHVVDALVEAGGVARAAVRAIGAHGQTV
                     RHRPREFDGTGYTLQLNAPALLAELSGIDVIADFRSRDIAAGGIGAPLVPAFHRAVFG
                     RPDATLAVLNIGGIANLTVLHGDGRTVGFDCGPGNALMDHWTRAHTGRAFDAEGAWAA
                     SGRVALQLLAAMLGEPYFAQRPPKSTGRDLFRAEWLSARLDAFTGLLAQDVQATLAEL
                     TARACAADVLLHAPSARELLVCGGGALNLELMRRLAAHLPGVGVMPTDRFGLPATQVE
                     ACAFAWLAQAFVERRPGNLDSVTGARGPRVLGALHPAGTAAG"
     gene            complement(1674..>2025)
                     /locus_tag="VF308_03115"
     CDS             complement(1674..>2025)
                     /locus_tag="VF308_03115"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEX7435673.1"
                     /translation="FAGWQNGYGNVIEIKHNRERSTVYAHLSHIDVVKGEHVEQGAYI
                     GAVGSTGWATGPHLHFEVKFAGVQQDPLVVAQSSEAVAITSAGRAEFAQVTRGLKSQL
                     EVAESVGRSIGYGE"
BASE COUNT          340 a          668 c          721 g          296 t
ORIGIN      
        1 gaacagccgg caaggtgccg aaggagatcc gaatgagcgc agtcgctgaa cagagtcaaa
       61 gccagcccga ggccgatgcg ccgccggtgc cgctcatctt caccgacagc gctgccgcga
      121 aggtgaagga actggtcgac gaggaaggca acccggagtt gaagcttcgc gtcttcgtgc
      181 aaggcggcgg ctgttccggc tttcagtacg gcttcacgtt cgacgaactc gtcaacgacg
      241 acgatacgca gatggccaag aacggcgtca cgttgctgat cgatgcgatg agcctgcagt
      301 atctcgctgg cgccgagatc gactacaagg acgatctcca aggggcccag ttcgtgatca
      361 agaacccgaa cgccacgacg acctgcgggt gcggatcgag cttctcggcc tgagggattc
      421 gcgccgatca cgagagccgc ctgcgggcgg cttttttgtt tgcctagccg gcggccgttc
      481 cggcgggatg cagcgcgccg aggacgcgcg gaccgcgggc gccggtgacg ctgtcgaggt
      541 tgccggggcg gcgttcgacg aacgcctgcg cgagccaggc gaatgcgcac gcctcgacct
      601 gcgtcgccgg aagcccgaac cggtcggtgg gcatcacgcc gacgccgggc aggtgcgcgg
      661 cgaggcggcg catcaactcg aggttgaggg ctccgccacc gcagacgagc agctcacgcg
      721 ccgaaggtgc gtggaggagg acgtccgcgg cgcaggcgcg tgcggtgagc tcggccaggg
      781 tcgcctgcac gtcttgcgcg agcaggcccg taaacgcgtc cagtcgggcc gacagccact
      841 cggcccggaa caggtcgcgt cccgtgctct tgggcggccg ctgcgcgaag tagggctcgc
      901 cgagcatcgc cgcgagcagc tgcagggcga cccggccgga cgcggcccaa gccccttcgg
      961 cgtcgaaggc gcggccggtg tgcgcgcggg tccaatggtc catcagcgcg ttgccgggcc
     1021 cgcagtcgaa gccgacagtg cgtccgtcgc catgaagaac cgtcaggttg gcgatgccgc
     1081 cgatgttgag aacggccagc gtcgcatcgg gcctgccgaa cacggctcga tgaaacgccg
     1141 gcaccagcgg cgcaccgatg ccaccggcgg cgatgtcgcg gctgcgaaag tcggcgatga
     1201 cgtcgatgcc cgagagttcg gcgaggagcg cgggagcgtt caactgcagg gtgtagccgg
     1261 tgccatcgaa ctcgcgtgga cgatggcgga ccgtctggcc atgggcgccg atggcgcgca
     1321 cggcagcgcg cgccacgccg cccgcttcga cgagcgcatc gaccacgtgc gcatagatgc
     1381 gtgttagggc attggcggcg agcgcggccc gatgtaattc gtccgcgccg ctggtgttga
     1441 gggcgagcaa ctcggcctgg agcggcgccg caaagggccg atgcgcatgg gcgagaaccc
     1501 gcatcggtgc ctcggcgccg gagccgaacg acacgagcac gccatcgacg ccgtccagcg
     1561 acgtgccgga catcaatccg atgtagagcg tcatcgatcg attgtgccgc gggcctcttc
     1621 atccggccat gaaaaaggcc cgcagcgcgg gccatcggcg gtcgcgcggc gcgctattcg
     1681 ccgtagccga tcgagcggcc gacgctttcg gccacttcga gctggctctt caggccgcgc
     1741 gtcacctgcg cgaactcggc cctaccggcc gaggtgatcg ctaccgcctc cgaggactgg
     1801 gccaccacca gcggatcctg ctggaccccg gcgaacttca cctcgaaatg caggtgcggc
     1861 ccggtggccc agccggtcga gccgaccgcg ccgatgtacg cgccttgctc gacgtgttcg
     1921 cccttgacca catcgatgtg gctcaggtgc gcatagacgg tggagcgttc gcggttgtgc
     1981 ttgatctcga tcacgttgcc gtagccgttc tgccagccgg cgaac
//
LOCUS       DASVHM010000159         2948 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1165111, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000159 DASVHM010000000
VERSION     DASVHM010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2948
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1165111"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1195
                     /gene="pyk"
                     /locus_tag="VF308_03120"
     CDS             <1..1195
                     /gene="pyk"
                     /locus_tag="VF308_03120"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEX7435674.1"
                     /translation="DRTVLEPGQKFILDGAMTELGSNARVGLDYKELARDVRPGDTLL
                     LNDGLLKLSVDAVRGEEVHTTVVSGGELSNNKGINKAGGGLTAPALTAKDMEDIKTAM
                     SFQCEYLAVSFPKSATDMEMARQLANVAGEPWRHKPQLIAKIERSEAIPALEQILRAS
                     DGIMVARGDLAVEVGNATVPALQKRMIRMAREMDRFVITATQMMESMIVNPVPTRAEV
                     SDVANAVLDGTDAVMLSAETAAGRYPVETIEMMATICIEAERAEEISLDAGFTNKTFG
                     RIDQSIAMAALFTAYHLGCKAILALTESGSTALWMSRHKIHVPIFGLTSQVRTLRRMA
                     IYRNVRPLLIPSFPDRDEALKQAELLLVQGGALKPGDTYAITCGEPMGYPGGTNMLKV
                     GRVGA"
     gene            1227..2438
                     /locus_tag="VF308_03125"
     CDS             1227..2438
                     /locus_tag="VF308_03125"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008904555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEX7435675.1"
                     /translation="MDSRLTIDAIRAAAARLSGEVTRTPCMPSRTLTELAGCEVFLKF
                     ENLQFTASFKERGALNKMAQLTAQERARGVLAVSAGNHAQAVAYHAERMGIAATIVMP
                     RFAPSVKVERTRGFGATVVLEGDTFEDARAHGLELARERGLTVVHPFDDLAVIAGQGT
                     IGLEMLEQQPSIDTLVIAIGGGGLISGIAIAARAIRPGIQIVGVQTERFPAAWNAFHG
                     GHLECAQATIADGIGVKSPGALTLPLIRSLVDDVVLVGEDDIEQAILMLLEIEKTVVE
                     GAGAVGLAAVMKDRARFAGRKVGLALGGGNIEPLVLAEIIERGMVKSGRLARLRLDVR
                     DVPGALADVATLLGRLGANIDEVQHQRAFTSLSVERVQIEVVVQTRGVAHIEAILAAM
                     REQGYRAERIG"
     gene            2515..>2948
                     /locus_tag="VF308_03130"
     CDS             2515..>2948
                     /locus_tag="VF308_03130"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013206893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEX7435676.1"
                     /translation="MPLVSMRQLLDHAAENGYGIPAFNVNNLEQVQAVMSAAEEVGAP
                     VILQASAGARKYAGEAFIKHLIQAAIESWPRVPLVMHQDHGQSPEVCRSAIDLGFSSV
                     MMDGSLQADGKSIASYDYNVDVTRKVVDMAHQRGVTVEGELG"
BASE COUNT          492 a          996 c         1025 g          435 t
ORIGIN      
        1 cgaccgcacg gtgctcgagc cggggcagaa gttcatcctc gacggcgcca tgaccgagct
       61 cggcagcaac gcccgggtcg gcctcgacta caaggagctc gcgcgcgacg tgcggccggg
      121 cgacacgctg ctcctcaacg acggcctgct caagctcagc gtcgacgcgg tgcgcggcga
      181 ggaggtccac accaccgtcg tctcgggcgg cgagctctcg aacaacaagg gcatcaacaa
      241 ggccggaggc ggcctgaccg cgcccgcgtt gaccgccaag gacatggagg acatcaagac
      301 cgcgatgtcg ttccagtgcg aatacctggc ggtcagcttt ccgaagagcg cgaccgacat
      361 ggagatggca cgccagctcg ccaacgtggc cggcgagccg tggcgccaca aaccgcagct
      421 gatcgcgaag atcgagcgca gcgaagcgat cccggcgctc gaacagatcc tcagagcctc
      481 cgacggcatc atggtcgcgc gtggcgacct cgccgtcgag gtcggcaacg cgacggtgcc
      541 ggcgctgcag aagcggatga tccggatggc gcgcgagatg gatcgcttcg tcatcaccgc
      601 gacccagatg atggagtcga tgatcgtcaa cccggtgccg acgcgcgccg aggtcagcga
      661 cgtggcgaac gcggtgctcg acggcaccga tgcggtgatg ctctcggccg agaccgcggc
      721 gggccgctat ccggtcgaga cgatcgagat gatggcgacg atctgcatcg aggccgaacg
      781 cgccgaagag atttcgctcg atgccggctt caccaacaag accttcggcc gcatcgatca
      841 gtcgatcgcg atggccgcgc tcttcaccgc ctaccacctc ggctgcaagg cgatcctggc
      901 gctgaccgag tcggggtcga cggccctctg gatgagccgg cacaagatcc acgtgccgat
      961 cttcggcctg acgtcgcagg tgcgcaccct gcgtcgcatg gcgatctacc gcaatgtgcg
     1021 gccgttgttg attcccagct tccccgatcg cgacgaggct ctgaaacagg ccgagctgct
     1081 gctcgtccag ggcggcgcgt tgaagcccgg cgacacctac gcgatcacct gcggcgagcc
     1141 gatgggctac cccggcggca ccaacatgct gaaggtcggc cgcgtcggcg cctgacctgg
     1201 caagccgcgc tgcgacgatt tcaccgatgg attcgcgcct cacgatcgac gccatccgcg
     1261 ccgccgcggc gcgcctgtcg ggcgaggtga cgcgcacgcc gtgcatgcct tcgcgcacgc
     1321 tgaccgagct ggccggctgc gaggtgttcc tgaagttcga gaacctgcaa ttcaccgcgt
     1381 cgttcaagga gcgcggcgcg ctcaacaaga tggcgcagct gaccgcgcag gagcgcgccc
     1441 gcggcgtgct cgcggtgtcg gcggggaacc atgcacaggc ggtcgcgtat cacgccgagc
     1501 gcatggggat cgcggcgacg atcgtgatgc cgcgcttcgc gccctcggtc aaggtcgagc
     1561 gcacgcgcgg cttcggcgcc acggtcgtgc tcgaaggcga cacgttcgag gatgcgcgtg
     1621 cccatggcct cgagcttgcc agggagcgcg gcctcaccgt cgtgcacccg ttcgacgacc
     1681 tcgccgtgat cgccgggcag ggcacgatcg gcctcgagat gctcgagcag cagccgtcga
     1741 tcgacaccct ggtcatcgcg atcggaggcg gcgggctgat ctcgggcatc gcgatcgcgg
     1801 cgcgcgcgat ccggcccggc atccagatcg tcggcgtgca gaccgagcgc ttcccggcgg
     1861 catggaacgc gttccatggc ggacacctcg agtgtgccca ggcgacgatc gccgacggca
     1921 tcggcgtcaa gtcgcccggc gcgctgacgc tgccgctgat ccgcagcctc gtcgacgacg
     1981 tggtgctggt cggcgaagac gacatcgagc aggcgatcct gatgctcctc gaaatcgaga
     2041 agaccgtggt cgaaggggcc ggcgcggtgg gtctcgccgc ggtgatgaaa gatcgcgccc
     2101 gcttcgcggg gcgcaaggtc gggctcgccc tcggcggcgg caacatcgag ccgctggtgc
     2161 tcgccgagat catcgagcgc ggcatggtga agtcgggccg gctcgcgcgc ctgcgcctcg
     2221 acgtgcgcga cgtgcccggc gcgctcgctg acgtcgcgac cctgctcggc cggctcggcg
     2281 ccaacatcga cgaggtgcag caccagcgtg cgttcacgtc gctttcggtc gagcgggtgc
     2341 agatcgaggt cgtggtgcag acgcgcggcg tcgcccacat cgaggcgatc ctcgcggcga
     2401 tgcgcgagca gggttaccgg gccgagcgca tcggctgaag ggcgtgcggc ggcggggcct
     2461 cggtacaatc gaagcatcgc gccgtcgtct ttcgcctgct tctcggagac tcccatgccc
     2521 ctggtttcga tgcgccaact gctcgatcac gccgccgaaa acggctatgg cattccggcc
     2581 ttcaacgtca acaacctcga gcaggtccag gccgtgatgt cggcggccga agaggtcggc
     2641 gcgccggtga tcctgcaggc gagcgccggg gcccgcaagt acgccggcga ggccttcatc
     2701 aagcatctga tccaggccgc gatcgaatcc tggccgcggg tgccgctggt gatgcaccag
     2761 gatcatggcc agagccccga ggtctgcagg agcgcgatcg atctcggctt cagctcggtg
     2821 atgatggacg gttcgctgca ggccgacggc aagtcgatcg caagctacga ctacaacgtc
     2881 gacgtgaccc gcaaagtcgt cgacatggcg caccagcgcg gcgtcacggt cgagggcgaa
     2941 ctcggctg
//
LOCUS       DASVHM010000160         1621 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_950256, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000160 DASVHM010000000
VERSION     DASVHM010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_950256"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..622)
                     /locus_tag="VF308_03135"
     CDS             complement(<1..622)
                     /locus_tag="VF308_03135"
                     /inference="COORDINATES: protein motif:HMM:TIGR01726.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015837 - amine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX7435677.1"
                     /translation="MLAVLAVMLARNLAHNLEARQIRSGFGFLADAAGFNIGEQLFAY
                     NASDSYLRAFAVGMANSLRVALAGIVLASLLGLVVALMRLSHHPVLKAIGSGWVEILR
                     NVPLLIQLLAIYLLATEWLPEVTEAWSLGSVALWSKEGLQVTVPEQGTLAALCALAAF
                     LLVGVLAALGARRWLEVGTGGVGIAAGVVAAMAAWFAVGAGSGWSRP"
     gene            complement(733..>1621)
                     /locus_tag="VF308_03140"
     CDS             complement(733..>1621)
                     /locus_tag="VF308_03140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018904506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7435678.1"
                     /translation="GFSAADSQGQWTGLDVEFCRALAAVTLKDASKVKFVPLNSQQRF
                     ASLQAGEIDVLSRNSTWTLTRDASLGVTFTGINYYDGQGFMVPKKLKIDSTKRLNGAT
                     VCVQAGTTSEKNVADYFKANGMSYKPVVFDTAEAITSAFFAGRCQVYTTDMSDLAGAR
                     TKAPKPGDFVVLPQVISKEPLGPSVRRGDDEWFEIVRWTLFAMLEAEEAGLTQANVDA
                     QKATSKDPNVQRLLGVSEDTGKLLGLDAEWAYRIVKQVGNYGESFERNLGPATPIGLP
                     RGVNNLWTKGGLMYAPPVR"
BASE COUNT          270 a          561 c          541 g          249 t
ORIGIN      
        1 ccggtcggga ccagccgcta cccgcgccaa cggcgaacca cgccgccatg gcagccacga
       61 cgccggcggc gatgccaacg ccgccagtcc cgacctcgag ccagcgccgt gcgccgagag
      121 ccgccaggac gccgacgagc aggaaggcgg cgagcgcaca cagcgctgcg agcgtgccct
      181 gctccggcac ggtgacctgc aggccttcct tcgaccagag cgccacgctg ccgagcgacc
      241 aggcttcggt gacctcgggc aaccactcgg tcgccagcag gtagatcgcg agcagctgga
      301 tcagcagcgg aacgttgcgg aggatctcga cccagcccga gccgatggcc tttagcaccg
      361 gatggtgcga cagccgcatc agcgccacga cgaggcccag cagcgacgcg agcacgatgc
      421 cggccagcgc cacgcgcagc gagttggcca tgcctactgc gaaggcgcgc aggtaggagt
      481 cgctcgcgtt gtaggcgaac agctgctcgc cgatgttgaa gcccgcggca tcggcgagga
      541 agccgaagcc cgagcggatc tggcgcgcct cgaggttgtg cgccaggttg cgcgcgagca
      601 tgaccgcgag caccgccagc atcacggcaa cgaagaactg ccagccgatt tcgcgacgcc
      661 gccgcgcgcg cgaccgctca agccacgcgg cgtcaccgac gagcccggag gccgacggac
      721 gggctcgtcc ggtcaacgca ccggcggcgc gtacatcagg ccgcccttgg tccacaggtt
      781 gttcacgccg cggggcaggc cgatcggcgt ggccggcccg aggttgcgct cgaagctctc
      841 gccataattg ccgacctgct tgacgatgcg ataggcccat tcggcgtcta ggccgagcag
      901 cttgccggta tcctcgctca cgccgagcag gcgctgcacg ttcgggtcct tgcttgtcgc
      961 cttctgggca tcgacgttgg cctgcgtaag gccggcttcc tcggcctcga gcatcgcaaa
     1021 cagcgtccag cgcacgatct cgaaccattc gtcgtcgccg cggcgaaccg acggtccaag
     1081 cggctccttg gagatgacct gcggcagcac gacgaagtcg cccggtttgg gcgccttggt
     1141 gcgcgcgccg gccaagtcgc tcatgtcggt cgtgtagacc tggcagcgcc cggcgaagaa
     1201 ggcactcgtg atggcctcgg ccgtgtcgaa gaccaccggc ttatagctca tgccgttagc
     1261 cttgaagtag tcggccacgt tcttttcgct cgtcgttccg gcctgcacgc agaccgtggc
     1321 accgttcaac ctcttcgtgc tgtcgatctt gagcttcttg ggcaccatga agccctggcc
     1381 gtcgtagtag ttgatgccgg tgaaggtcac gccgagcgac gcgtcgcgcg tgagcgtcca
     1441 ggtactgttg cgcgacagca cgtcgatctc gcccgcctgc agcgaggcga agcgttgttg
     1501 cgagttgagc ggcacgaact tgaccttgct cgcgtccttg agcgtgacag cggcaagtgc
     1561 gcggcagaac tcgacgtcca ggcccgtcca ttggccctgg ctgtcggcgg ccgagaagcc
     1621 c
//
LOCUS       DASVHM010000161         3505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_444071, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000161 DASVHM010000000
VERSION     DASVHM010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3505
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444071"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..1036)
                     /gene="secF"
                     /locus_tag="VF308_03145"
     CDS             complement(5..1036)
                     /gene="secF"
                     /locus_tag="VF308_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016723719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEX7435679.1"
                     /translation="MEFFRIHRDIPFMRHALVFNVISLLTFLAAVFFLATRGLHFSIE
                     FTGGTVIETAYAQPADIPKVRAAVEGLGLGDVLVQNFGSSRDVLIRVPLRGDIKKEDL
                     VTRVFAELCKAEGGSVVARAGPAEQGQSASRQVCAAGAAEPVRLSRSEFVGPQVGKEL
                     AQDGAKALAFVVIGIMIYLAFRFEWKFSVAAIVANLHDVVIILGFFAFFQWEFSLSVL
                     AAVLAVLGYSVNESVVIFDRIRESFRRYRKLTTREVIDHAITSTISRTIITHGSTQMM
                     VLSMLVFGGQTLHYFAIALTIGILFGIYSSVFVAAAIAMWLGVKREDLVKSAAKDHDP
                     NDPNAGAVV"
     gene            complement(1076..2950)
                     /gene="secD"
                     /locus_tag="VF308_03150"
     CDS             complement(1076..2950)
                     /gene="secD"
                     /locus_tag="VF308_03150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEX7435680.1"
                     /translation="MNRYPLWKYAIMLVALLVGLIYTLPNLFGEAPAVQVSSGKVTVK
                     LDPSLAPRIEEILTKSGLKPDFVRYDGNSVKARLGDLDEQRKAKDAIGAALNPDPNDP
                     TYIVALNLLSRSPRWLTALHALPMYLGLDLRGGVHFLMQVDMKAALTKKAESTAGDVR
                     TLLRDKNIRHTGIARDGNGVVIRFRDQPTLAAARTVLLDQLTDFNWVESQEGADWKLA
                     GNLKPDAANRVQSAAITQNITTLHNRVNELGVAEPVIQRQGADRVVVQLPGVQDTAKA
                     KDIIGRTATLEMRMVDDSSEARLAETGAGPVPFGSERYVERGGQPVVVKRQVLITGEN
                     LTDAQPGFDGQSQEPAVHLSVDARGARIMRDVSRENIGKRMAILLFEKGKGEVVTAPV
                     IRGELGSRFQISGRMNTAEANDTALLLRAGSLAAPMEIIEERTIGPSLGAENIAKGFQ
                     SVIYGFCAIALFMCLYYLLFGIISTLSLAINLLLLIAVLSMLQATLTLPGIAAIALTL
                     GMAIDSNVLINERIREELRGGANPQAAINTGYERAFATILDSNVTTLIAGLALLAFGS
                     GPIRAFAIVHCLGIVTSMFSAVMFSRGLVNFWYGRQKRLKAVSIGQVWKPGASVPAET
                     "
     gene            complement(2988..3332)
                     /gene="yajC"
                     /locus_tag="VF308_03155"
     CDS             complement(2988..3332)
                     /gene="yajC"
                     /locus_tag="VF308_03155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003066810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEX7435681.1"
                     /translation="MFISEAFAQAAPAATGAADGPFGGLGGLGGMLPLVLMFVVLYFV
                     MIRPQMKRQKEHKAMIDALAKGDEVVTSGGVLGKVSKMGDTFVGVEVANGVEIQVQRS
                     AVVQVMPKGTVK"
BASE COUNT          576 a         1144 c         1242 g          543 t
ORIGIN      
        1 gactctacac cacagccccg gcgttcgggt cgttcggatc gtggtccttg gcggccgact
       61 tgacgaggtc ttcacgcttg acgccgagcc acatcgcgat cgcggcggcg acgaacaccg
      121 acgaatagat tccgaacagg attccgatcg tcagcgcaat ggcgaagtag tgcagggtct
      181 ggccgccgaa gaccagcatc gagagcacca tcatctgggt cgagccgtgg gtgatgatgg
      241 tgcggctgat cgtgctcgtg atcgcgtggt cgatgacctc gcgcgtcgtc agcttgcggt
      301 agcgccggaa gctctcgcgg atccggtcga agatgaccac cgattcgttg acggaatagc
      361 ccagcacggc cagcacggcg gcgagcaccg acagcgagaa ctcccactgg aagaacgcga
      421 agaagcccag gatgatgacg acgtcgtgca ggttggcgac gatcgcggcg accgagaact
      481 tccactcgaa gcggaacgcc aggtagatca tgatgccgat gacgacgaag gcgagcgcct
      541 tcgcgccgtc ctgggcgagc tccttgccga cctgcgggcc aacgaactcg ctgcgcgaca
      601 ggcgcaccgg ctcggcggct cccgccgcgc acacctggcg cgacgccgac tggccctgct
      661 cggccggccc ggcacgagcg acgacgctgc cgccttcggc cttgcacagc tcggcgaaga
      721 cgcgcgtgac gaggtcttcc ttcttgatgt cgccgcgcag cggcacgcgg atgagcacgt
      781 cgcgcgagct gccgaagttc tgcaccagca cgtcgccgag gccgaggccc tcgaccgccg
      841 cgcgcacctt cgggatgtcg gccggctgcg cgtaggccgt ctcgatcacc gtgccgccgg
      901 tgaactcgat cgagaagtgc aggccgcgcg tggcgaggaa gaagacggcg gcgaggaagg
      961 tcagcagcga gatgacgttg aagaccagcg catggcgcat gaacggaatg tcgcggtgga
     1021 tgcggaagaa ctccatcggg gctccggtct cagtctcgaa aagtcgaaaa gggcgtcaag
     1081 tctcggccgg aacgctcgcg cccggcttcc agacctggcc gatcgagacc gccttcaggc
     1141 gcttctggcg gccgtaccag aagttgacga ggccgcgcga gaacatcacc gccgagaaca
     1201 tcgaggtgac gatgccgagg cagtggacga tcgcgaaggc gcggatcggc cccgagccga
     1261 aggcgagcag cgccaggccg gcgatcagcg tcgtcacgtt cgagtcgagg atggtcgcga
     1321 aggcgcgctc gtagccggtg ttgatcgccg cctgcgggtt ggcgccgccg cgcagctcct
     1381 cgcggatgcg ctcgttgatc agcacgttgg aatcgatcgc catgccgagg gtgagcgcga
     1441 tggcggcgat gccgggcagc gtcagcgtcg cctgcagcat cgacagcacg gcgatcagga
     1501 ggagcaggtt gatggcgagc gagagcgtcg agatgatgcc gaacagcagg tagtacaggc
     1561 acatgaagag agcgatcgcg cagaagccgt agatcacgct ctggaagccc ttggcgatgt
     1621 tctcggcacc gaggctcggg ccgatcgtgc gctcctcgat gatctccatc ggcgccgcca
     1681 gcgagccggc gcgaagcagg agcgccgtgt cgttggcctc ggccgtgttc atgcggcccg
     1741 agatctggaa gcggctgccg agctcgccgc ggatcaccgg cgcggtgacg acctcgccct
     1801 tgcccttctc gaacagcagg atcgccatcc gcttgccgat gttctcgcgc gaaacgtcgc
     1861 gcatgatgcg cgcgccgcgc gcgtcgaccg agaggtgaac cgccggctcc tggctctggc
     1921 cgtcgaagcc gggctgcgcg tcggtgaggt tctcgccggt gatgagcacc tggcgcttga
     1981 cgacgaccgg ctggccgccg cgctcgacgt agcgctcgga gccgaacggc accgggccgg
     2041 cgccggtctc ggcgaggcgc gcctcgctgc tgtcatcgac catccgcatc tcgagggtcg
     2101 cggtgcggcc gatgatgtcc ttcgccttgg cggtgtcctg cacgcccgga agctggacga
     2161 cgacgcggtc ggcgccctgc cgctggatca ccggctcggc gacgccgagc tcgttgacgc
     2221 ggttgtgcag tgtcgtgatg ttctgcgtga tcgccgccga ctggacgcga ttggcggcgt
     2281 cgggcttgag gttgccggcg agcttccagt cggcgccctc ctggctctcg acccagttga
     2341 agtcggtcag ctggtcgagc aggacggttc gcgccgccgc cagcgtcggc tggtcgcgga
     2401 agcggatgac gacgccgttg ccgtcgcgcg cgatgccggt gtgacggatg ttcttgtcgc
     2461 gcaggagcgt cctcacgtcg ccggcggtcg actcggcttt cttggtgagc gccgccttca
     2521 tgtcgacctg catcaggaag tggacgccgc cgcgcaggtc gaggccgagg tacatcggca
     2581 gcgcatgcaa cgccgtcagc cagcgcggcg agcgtgacag caggttgagg gcgacgatgt
     2641 aggtcgggtc gttcggatcg gggttgagcg cggcgccgat cgcgtccttg gccttgcgct
     2701 gctcgtcgag gtcgccgagc cgcgccttca ccgaattgcc gtcgtagcgg acgaagtcgg
     2761 gcttgaggcc ggacttggtg aggatctcct cgatgcgcgg cgcgagcgag ggatcgagct
     2821 tgaccgtgac cttgccgctc gagacctgca ccgccggcgc ctcgccgaac aggttgggca
     2881 gcgtgtagat caggccgacc agcaacgcga ccagcatgat cgcgtacttc cagagcggat
     2941 agcggttcac ggccgacctc ccggcacccg acctttcgcg cgacccgtca cttgaccgtg
     3001 cccttgggca tcacctggac gacggccgag cgctggacct ggatctcgac gccgttggcg
     3061 acctcgacgc cgacgaaggt gtcgcccatc ttcgacacct tgccgaggac gccgcccgag
     3121 gtgacgacct cgtcgccctt ggcgagcgcg tcgatcatcg ccttgtgctc cttctgccgc
     3181 ttcatctgcg gccggatcat cacgaagtag agcaccacga acatgaggac gagcggcagc
     3241 atgccgccga gcccgccgag gccgccgaac ggcccatcgg cggcgccggt ggccgcggga
     3301 gcggcctgcg cgaaagcttc ggaaatgaac acgggtggat tcctctcgat gcgcggcagc
     3361 gggtggccgg ccaaaacctg cgaattgtaa ttcgcggcgt cgcctcagac ggccggcagg
     3421 gcagcgccgc cacgcggggg cgccgcgacc tcctgcgccg cggccgccgg gatggcgacc
     3481 aggcgcagca gggtgatctc ggacg
//
LOCUS       DASVHM010000162         2168 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_299302, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000162 DASVHM010000000
VERSION     DASVHM010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299302"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1283
                     /locus_tag="VF308_03160"
     CDS             <1..1283
                     /locus_tag="VF308_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019921628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HEX7435682.1"
                     /translation="VRFEGFPAGLEDAVNDGVRRAYLDPENKLRASIVADPHFLRKNT
                     GDNTPAVIHTALVPGNTVEVQVAAKGGGSENKSKFVMMNPSDSLVDWVLQTVPTMGAG
                     WCPPGMLGIGIGGTAERAMLLAKQSLMEDIDMFDLKARGPRDKIEELRIELFDKVNAL
                     GIGAQGLGGLTTVLDVKIATYPTHAAGKPVAMIPNCAATRHAHFVLDGSGPAFLEPPS
                     LDLWPDVKWAPDYKRSKRVDLDALTKAEVASWKPGDTLLLSGKMLTGRDAAHKRIQDM
                     LAKGEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTEMMLSQTGLISMI
                     GKAERGPVAIEAIRKHRSAYLMAVGGAAYLVSKAIRNARVVGFADLGMEAIYEFDVKD
                     MPVTVAVDANGTSVHQTGPAEWKARIARIPVAAA"
     gene            1383..1726
                     /locus_tag="VF308_03165"
                     /pseudo
     CDS             1383..1726
                     /locus_tag="VF308_03165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011796513.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
     gene            complement(1756..2130)
                     /locus_tag="VF308_03170"
     CDS             complement(1756..2130)
                     /locus_tag="VF308_03170"
                     /inference="COORDINATES: protein motif:HMM:NF026183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HEX7435683.1"
                     /translation="MVNNLLAAINLAGAAEALALAERLGLDPLRMQAVIEQSSGQSWI
                     GGDRMPRALAGDLAPRVRTTLLQKDSRLALSMADAAGFDPVLGREAAALFAAACAAGL
                     GELDDASLLQFVRHRRALLRER"
BASE COUNT          390 a          757 c          719 g          302 t
ORIGIN      
        1 aagtgcgctt cgaaggcttt ccggccggcc tcgaggacgc cgtcaacgac ggcgtgcgca
       61 gggcctacct cgatccggaa aacaagctgc gcgcgagcat cgtcgccgac ccgcacttcc
      121 tgcgcaagaa caccggcgac aacacgcccg cggtcatcca caccgcgctg gtgccgggaa
      181 acacggtcga ggtgcaggtc gcagccaagg gcggcggcag cgagaacaag agcaagttcg
      241 tgatgatgaa tccgagcgac agcctggtcg actgggtgct gcagaccgtg ccgacgatgg
      301 gcgccggctg gtgcccgccc ggcatgctcg gcatcggcat cggcggcacc gccgagcgcg
      361 ccatgctact ggccaagcag agcctgatgg aagacatcga catgttcgac ctcaaggcgc
      421 gcggcccgcg cgacaagatc gaggagctgc gcatcgagct cttcgacaag gtcaacgcgc
      481 tcggcatcgg cgcgcagggg ctgggcggcc tcaccacggt gctcgacgtg aagatcgcga
      541 cctacccgac gcatgcagcg ggcaagcccg tcgcgatgat cccgaactgc gccgcgaccc
      601 ggcatgccca cttcgtgctc gacggctcgg ggccggcctt cctcgaaccg ccgagcctcg
      661 acctctggcc cgacgtgaaa tgggcgcccg actacaagcg ctccaagcgc gtcgacctcg
      721 acgccctgac gaaggcggaa gtggcgagct ggaagcccgg cgacacgctg ctgctgtccg
      781 gcaagatgct taccggccgc gacgcggcgc acaagcgcat ccaggacatg cttgccaagg
      841 gcgagaagct gccggtcgat ttcacgaacc gcgtcatcta ctacgtcggc ccggtcgatc
      901 cggtgcgcga cgaagtcgtc ggcccggccg gcccgaccac cgcgacgcgc atggacaagt
      961 tcaccgaaat gatgctgagc cagaccggcc tgatctcgat gatcggcaag gccgaacgcg
     1021 ggccggtcgc gatcgaggcg atccggaaac accgcagcgc ctacctgatg gccgtgggcg
     1081 gcgccgcgta tctcgtctcg aaggcgatcc ggaacgctcg cgtggtgggc ttcgccgacc
     1141 tcggcatgga ggcgatctac gagttcgacg tgaaggacat gccggtcacc gtcgcggtcg
     1201 atgccaacgg aacgtcggtg caccagaccg gtccggccga gtggaaggcg cgcatcgcga
     1261 ggatccccgt ggcggccgct tgacgcaccc cgtcaccgta cagttgtcac acaagcgcca
     1321 tagactgcag ccgcgcgtgc tgttgctcga cgagccgctc accgccctcg acgcgaagct
     1381 gaaggacgcg catcggccac atggacgaca tcggcctcgt gcacggtgcc ggcaccctcg
     1441 ccgccatcat cgcgcgccac cgccaggtgg agcgcgtgat ctgcggccac ctgcaccgca
     1501 gcatccagac gcgctgggcc ggaacgatcg cgatgacggc gccctcgacc gcgcaccagg
     1561 tgcgctcgac ctcgccgtga atgccgcgcc ggccttcatg ctggagccgc ccggattcat
     1621 gatccatgcc tggtcgggca gcagccctct gatcacccac ctcgcttaca caggtgactt
     1681 cgagggcccg tatccgttcc acgatgcgga cgggctgatc gactgagttc gggaggacgc
     1741 gaggttcgcc ctcgttcatc gctcgcgcag cagggcgcgt cgatggcgca cgaactggag
     1801 gaggctcgcg tcgtcgagtt cgccaagacc cgctgcgcag gcggcggcga acaacgcggc
     1861 agcctcgcgc ccgagcacgg ggtcgaaccc cgccgcgtcg gccatcgaga gcgcgagccg
     1921 cgaatccttc tgcagcaggg tcgtgcggac ccgcggcgcg aggtcgccgg caagagcgcg
     1981 cggcatgcga tcaccgccga tccagctctg cccgctcgac tgctcgatca ccgcctgcat
     2041 gcgcagcgga tcgaggccga gccgttcggc cagcgccaaa gcctcggccg cgccggcgag
     2101 gttgatcgcg gcgagcaggt tgttgaccaa tactgttctg ttagtaaaaa aagtccccca
     2161 acggattt
//
LOCUS       DASVHM010000163         4528 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_804460, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000163 DASVHM010000000
VERSION     DASVHM010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4528
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_804460"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..400)
                     /locus_tag="VF308_03175"
     CDS             complement(<1..400)
                     /locus_tag="VF308_03175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006392404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435684.1"
                     /translation="MADDSEAAQPAVPFVRVGLTSKSLYFSIEEVQSRMQLRDPDALD
                     LRYTRTMMGFLLFAPAPKDIAMIGLGGGSLAKFCLRYLPRIRVEVVEVNPKVVALRDD
                     FRVPPDGDRFRVITGDGAQFMRDATRRYDVV"
     gene            complement(422..559)
                     /locus_tag="VF308_03180"
     CDS             complement(422..559)
                     /locus_tag="VF308_03180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435685.1"
                     /translation="MATLPGLPQTDEPEPDALPVEPDDGTTIPGLPDDPKGKPGEPPP
                     V"
     gene            complement(570..1043)
                     /locus_tag="VF308_03185"
     CDS             complement(570..1043)
                     /locus_tag="VF308_03185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435686.1"
                     /translation="MDTFGNLMRRLREKWAALLSVRGRSGPSMARDPAAMRRLEVESD
                     RVLTPATLRWLELLPEFARPVHFCERFPRVANQVAAVWADRRLCKAYFETLLGDDRGG
                     RAGFGPTVRKEIVRLRVFHERAMSDAGAEHDWKRRVAATPIGRAARARRQASART"
     gene            complement(1115..2155)
                     /locus_tag="VF308_03190"
     CDS             complement(1115..2155)
                     /locus_tag="VF308_03190"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007882881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016703 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of one atom of oxygen (internal
                     monooxygenases or internal mixed function oxidases)
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEX7435687.1"
                     /translation="MSAWRDLLGIERPIVQAPMAGVQLSALAVAVSNAGGLGSLPCAM
                     LGPDALRVELAAIVAQTDRPFNVNFFCHAAPEPSPEREQAWRAALAPYYAEFGIDAAA
                     LPAGPARAPFSAAAADTLVAARPSVVSFHFGLPSAELLARVRAMGSKIVSSATTVEEA
                     RWLESRGVNAIIAQGLEAGGHRGMFLSDDLTTQVGTFALLPQVVRAVRVPVIAAGGIA
                     DARGVAAALALGAAAVQLGTSYLLCPETTTSSVHRAALASPQAAHTALTNLVTGRLAR
                     GIVNRLMRELGPISSLAPQFPLASAALAPLRAEAERLGRGDFSPLWAGQNASACKPIA
                     AADLTRRLAGAA"
     gene            complement(2166..2954)
                     /locus_tag="VF308_03195"
     CDS             complement(2166..2954)
                     /locus_tag="VF308_03195"
                     /inference="COORDINATES: protein motif:HMM:NF005451.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEX7435688.1"
                     /translation="MNAPIRELPRAARPADIAEEEWALRLELAACYRLFVHLGWTEMI
                     FNHITLRAPGDEPHFLINPYGLHYSEVTARNLVKVDIRGNVIGASAYPINPAGFVIHA
                     AIHAHRPDAHCIIHTHTTAGIAVACKADGLRYDNFYSAQFWGRVAYHDFEGVTTDLAE
                     QERLVASLGKADALILRNHGLLVVGPSVPEAFIASWSLQRACEVQVAAGSMPGPNRPI
                     PEAVLRAIPAQQKPMQAGHSRPFQPVFDAMLRVAGIRPEDIAGH"
     gene            3138..4220
                     /locus_tag="VF308_03200"
     CDS             3138..4220
                     /locus_tag="VF308_03200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010465496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435689.1"
                     /translation="MIDRERRAALAALSAVWLAACGGGAASPAATSGAAQSPVPGPDL
                     AAPSSRGGPSYGRFAAAALGIGAPLNGALAFPADNPWNTDISAAPLDPASDALIASIG
                     LAAALHPDFGAGLYNGAPIGIPYVVVAGTQARVAMTWTAYGSESEPGPYPVPANAPVE
                     GGAALSNTGDRHVLVIDRDNNRLYELFSAIGNADGSWDAACGAVFDLDSNAVRPTAQP
                     GWTSADAAGLPIFPGLARYEEAAQGPGGIRHALRFTVQRSRRAYVPPAMHWASSNTDA
                     SVPPMGMRVRLKASYAIPASFSLETRALLTAMKTYGMIVADNGSNWFVSGAPDERWNN
                     TALVGELRQVTGQNFEVVRMDGLVAG"
     gene            complement(4262..>4528)
                     /locus_tag="VF308_03205"
     CDS             complement(4262..>4528)
                     /locus_tag="VF308_03205"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX7435690.1"
                     /translation="LARAKGLLLLGEEFCAEDAGRWGLVWSVVDDERLDGEVARIGAR
                     LAGFDPRVVGRFKRVLNDLNLDRFEAGLDLEARMQTEFAADPGA"
BASE COUNT          683 a         1582 c         1636 g          627 t
ORIGIN      
        1 gcacgacgtc gtagcgccgc gtggcgtcgc gcatgaattg cgcgccgtcg cccgtgatca
       61 cccggaaacg atcgccatcg ggcggcaccc ggaaatcgtc gcgcagcgcg acgaccttcg
      121 gattcacctc gaccacctcg acccggatcc tcggcaggta gcgcaggcag aatttcgcga
      181 gcgagccgcc gcccaggccg atcatcgcga tgtctttcgg ggcgggcgcg aacagcagga
      241 aacccatcat cgtgcgcgtg tagcgcaggt cgagggcgtc ggggtcgcgc agctgcatgc
      301 ggctttgcac ctcctcgatc gagaaataga gcgacttgga ggtcaagccg acacggacga
      361 agggaacggc cggctgcgcc gcttcggaat cgtcggccat gggaggggaa cgcgagccag
      421 cctagaccgg cggcggctcg ccgggcttgc ccttcggatc gtcgggaaga ccggggatcg
      481 tcgtgccgtc gtccggctcg accgggaggg cgtcgggctc gggctcgtcg gtctggggga
      541 gtcccgggag agtggccatg gtcgatgtcc taggttcggg cactcgcctg ccggcgcgcg
      601 cgcgccgctc tgccgatcgg cgtcgcggcg acgcgccgct tccagtcgtg ctcggcaccg
      661 gcgtcgctca tcgcccgctc gtggaagacg cgcaggcgaa cgatttcctt gcgcaccgtg
      721 gggccgaagc cggcgcgacc gccgcggtcg tcgcccagca gcgtttcgaa atacgccttg
      781 cacaaccggc gatcggccca gaccgccgca acctgattgg cgacgcgcgg aaagcgctcg
      841 cagaagtgca ccgggcgcgc gaactcgggc agcagttcga gccaccgcaa ggtcgccggc
      901 gtcaggaccc tgtcgctttc aacctccaac cggcgcatcg cggccgggtc gcgcgccatg
      961 gacgggccgg acctgccgcg cactgacaag agcgcggccc atttttcacg cagccgtcgc
     1021 atcaggttac cgaaagtatc catcctcgcg actgtagcaa tgttgacgac ggcggccgcg
     1081 cgccgaaaag atggctggcc actccggtcg gcctttacgc cgccccagcc agtcggcgcg
     1141 tcaggtcggc ggccgcaatc ggcttgcaag cgctcgcgtt ctggccggcc cagagcggcg
     1201 agaagtcgcc gcgtcccagg cgttcggcct cggcccgcaa cggcgcaagc gcggcgctgg
     1261 cgaggggaaa ctgcggcgcc agcgaactga tcgggccgag ctcgcgcatc aggcggttga
     1321 cgatgccgcg cgcgagcctt ccggtgacga ggttggtgag cgcggtgtgc gccgcctgcg
     1381 gactcgccag ggcggcacgg tgcacgctgc tcgtcgtcgt ctcgggacag agcagatagg
     1441 aagtcccgag ctgcaccgcc gcggcgccga gcgcgagcgc cgccgcgacg ccgcgcgcgt
     1501 cggcgatgcc gccggcggcg atgaccggga cacggacggc gcgcacgacc tgcggcaaga
     1561 gcgcgaaagt cccgacctgg gtggtcaggt cgtccgacag gaacatgccg cggtgacccc
     1621 cggcctcgag gccctgggcg atgattgcgt tgacacctcg agattccagc cagcgcgcct
     1681 cctcgacggt cgtggccgag gacacgatct tcgatcccat ggcccgcacc cgcgcgagca
     1741 attccgccga gggcaggccg aaatggaagc tgacgacgga tggccgcgcc gccacgagcg
     1801 tatcggccgc cgcggcgctg aacggcgccc tcgcggggcc ggccggcagc gctgcggcat
     1861 cgatgccgaa ttcggcgtag tagggggcga gcgcggcacg ccaggcctgc tcgcgttcgg
     1921 ggctcggttc gggcgccgcg tggcagaaga aattgacatt gaacggccgg tcggtctgcg
     1981 cgacgatggc cgcgagttcg acgcgcagcg cgtccggccc gagcatcgcg cacggcagcg
     2041 aacccaggcc gccggcgttg ctcacggcca ctgccagcgc actcagctgc acaccggcca
     2101 tgggcgcctg cacgatgggc cgttcgatgc ccagcaggtc ccgccacgcg ctcatgcagc
     2161 gctcctcaat gtccggcgat gtcctccggc cggatgccgg cgacgcgcag catcgcgtcg
     2221 aaaaccggct ggaagggccg gctgtggccc gcctgcatgg gcttctgctg cgccgggatc
     2281 gcgcgcagga cggcctccgg gatcggccgg ttcgggcccg gcatcgaacc ggccgccacc
     2341 tgcacctcgc aggcgcgctg cagcgaccag cttgcgatga acgcctcggg gacgctcggt
     2401 ccgaccacga gcagcccgtg gttgcgcagg atcagcgcat cggccttgcc gaggctggcg
     2461 acgagacgct cctgttcggc gaggtcggtg gtcacgcctt cgaagtcgtg gtacgcgacc
     2521 cggccccaga actgcgccga gtagaagttg tcgtagcgca ggccgtcggc cttgcaggcg
     2581 acggcgatgc ccgccgtcgt gtgggtgtgg atgatgcagt gcgcatccgg acggtgcgca
     2641 tggatcgccg cgtggatcac gaagccggcc gggttgatcg ggtaggccga ggcgccgatc
     2701 acgttgccgc ggatgtcgac cttgacgagg ttgcgcgccg tcacctcgct gtagtgcagg
     2761 ccgtacgggt tgatcaggaa gtgcggctcg tcgccgggcg cgcgcaaggt gatgtggttg
     2821 aagatcatct cggtccagcc gagatggacg aacaggcgat agcaggcggc gagttcgagg
     2881 cgcagtgccc attcctcttc ggcgatgtcg gcggggcggg cggcgcgcgg cagttcgcgg
     2941 atcggtgcgt tcatcgggat tcctttcgcg tgtccgttcc gatggtagcc gggctcctcc
     3001 ggacagggtc atgcccggcc gcgaagagga cgcgttgtga cggcgtgtaa gagccgcgac
     3061 tcgcggccaa attcacgccg tgccgggacg ggccgcctca acaatcgagg gcgccgagtc
     3121 cggcggggag agccgagttg atcgatcgag aacggcgcgc cgcacttgcg gcgctgtcgg
     3181 ccgtctggct cgccgcctgc ggcggcggcg ccgcgagccc ggccgccaca agcggcgccg
     3241 cgcagtcgcc ggtccccggg cctgacttag ccgcgccgtc ctcccgcggc ggcccgagtt
     3301 acgggcgctt cgccgcggcg gcgctcggca tcggtgcacc gctcaacggc gcgctcgcgt
     3361 ttccggccga caacccctgg aacaccgaca tcagcgcggc accgctcgac ccggcctcgg
     3421 atgcgctgat cgcgagcatt ggcttggccg cggccctgca tccggatttc ggcgccggcc
     3481 tctacaacgg tgcgccgatc ggcattccgt atgtcgtcgt cgccggcacg caggcgcggg
     3541 tcgcgatgac ctggaccgcg tatggcagcg agagcgaacc cggcccgtac ccggtacccg
     3601 cgaatgcgcc ggtcgagggc ggcgccgcgc tcagcaacac cggcgaccgg cacgtgctcg
     3661 tcatcgaccg cgacaacaac cggctctacg aactcttcag cgcgatcggc aacgccgacg
     3721 gctcgtggga cgccgcctgc ggcgcggtct tcgacctcga cagcaacgcc gtgcggccga
     3781 ccgcgcagcc cggctggacc agcgccgacg ccgccggcct gccgatcttt ccggggctcg
     3841 cgcgctacga ggaagcggcg caagggccgg gcggcatccg ccacgcactg cgcttcacgg
     3901 tgcagcgctc gcgccgcgcc tacgtgccgc cggcgatgca ctgggcttcg tcgaacaccg
     3961 atgcgagcgt gccgccgatg ggcatgcggg tgcgcctgaa ggcgagctat gcgatcccgg
     4021 cctccttcag cctggagacg cgcgcgctgc tgaccgcgat gaagacctac gggatgatcg
     4081 tggccgacaa cggcagcaac tggttcgtca gcggcgcgcc cgacgaacgc tggaacaaca
     4141 ccgccctcgt cggcgaactg cgccaggtga cggggcagaa cttcgaggtc gtgcggatgg
     4201 atgggctggt cgccggctga ggccggcgac gcaggtcgaa cccgcgaggc gtgcgagcga
     4261 gctacgcgcc cgggtccgcc gcgaactcgg tctgcatccg cgcttcgagg tcgaggccgg
     4321 cctcgaagcg gtcgaggttc aggtcgttga ggacacgctt gaaacgcccg accacgcgcg
     4381 ggtcgaagcc ggcaaggcga gccccgatgc gcgcgacctc gccgtcgagc cgctcgtcgt
     4441 cgaccaccga ccacaccagg ccccagcgcc ccgcgtcctc ggcgcagaac tcctcgccga
     4501 gcaggagcag gcccttggca cgggccag
//
LOCUS       DASVHM010000164         1849 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1237567, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000164 DASVHM010000000
VERSION     DASVHM010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1237567"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..648
                     /locus_tag="VF308_03210"
     CDS             <1..648
                     /locus_tag="VF308_03210"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7435691.1"
                     /translation="LRIADNGVGMSPEKVARLFEPFNRLGAEASGVEGTGIGLVLSRR
                     LAGLMQGQLHVESEVGKGTIATLTLARSYDPSALPSSLAPPSQHGELDQPLRVLYAED
                     NEVNVELVRQVVTLRPSVALEVAINGTLALEQARRDPPDLMLVDMNLGDMTGLELAQA
                     LRADDTTAGIRLVALSADALPEQIAAAMAAGFEGYLTKPINFRDLLDVLDGRSRR"
     gene            785..1591
                     /locus_tag="VF308_03215"
     CDS             785..1591
                     /locus_tag="VF308_03215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017875194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HEX7435692.1"
                     /translation="MAHPFQRTGALKDISSYPLWLQRVVRETHADKKRIVDHELFALM
                     RDARLPTSAMRRFLMGAWPTIQNFPQFMAMSLKKVNAGDGAGEDLARHYLIKNIRVEQ
                     KHADHWVEWAGSVGLTLGDLRQADDLQGIHALAHWCWYVCDRAPLAVAVAATNYAVEG
                     ATGEWACVVCSKSTYADSLPEDIRGPATRWLRLHAEYDDTHPWEALDIVATLLGNAPQ
                     QADIDAVRRAIHSSYAYIEMGLDDSMSVAMHGSFDETASNASTLGALDAA"
     gene            complement(1655..>1849)
                     /locus_tag="VF308_03220"
     CDS             complement(1655..>1849)
                     /locus_tag="VF308_03220"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEX7435693.1"
                     /translation="LEHGVAVDANDGLRLVFFERWADRDALLAHFRVPASREFAAQAA
                     RLAVHSPELVAYEASELPLR"
BASE COUNT          323 a          647 c          620 g          259 t
ORIGIN      
        1 ctgcgcatcg ccgacaacgg cgtgggcatg agcccggaga aggtcgcgcg gctgttcgag
       61 cccttcaacc gcctgggtgc ggaggcctcg ggcgtcgaag gcacgggcat cggcctcgtc
      121 ctctcgcgcc gtctggccgg gctcatgcag ggccagctcc acgtggaaag cgaggtcggc
      181 aaagggacca tcgccaccct gacgctcgcg cgctcctacg atccctcggc gctgccgagc
      241 agcctggcgc cgccgagcca gcacggcgag ctcgaccagc cgctgcgcgt cctctatgcc
      301 gaggacaacg aggtcaacgt cgagctcgtc cggcaggtgg tgacgctgcg gccatcggtg
      361 gcgctggagg tggcgatcaa cggcacgctc gcgctcgagc aggcgcggcg cgatccgccc
      421 gacctgatgc tggtcgacat gaacctgggc gacatgaccg gcctggagct cgcgcaagcg
      481 cttcgggccg acgacacgac ggccgggatc cggctcgtcg ccctctcggc cgatgccctg
      541 cccgagcaga tcgccgcggc catggccgcg ggcttcgagg gatacctgac caagccgatc
      601 aactttcgcg acctcctcga cgtgctcgac ggccgatcgc gcagataggc gtctaccctt
      661 agtcgatcgc gtggcgaatc ggcacacgac ttgcgtgacc cctttcacga ttcgggatcc
      721 ggcacctaca atgaagacgg gtaggtaggc acatacaagc accagcgtgg aggaggtccg
      781 gcgaatggct cacccgttcc agcgcaccgg cgctttgaag gacatttcga gctatcccct
      841 ctggctgcag cgcgtcgtga gagagacgca cgccgacaag aagcgcatcg tcgaccacga
      901 gctgttcgcg ctgatgcgcg acgccaggct gccgacctcc gcgatgcggc gctttctcat
      961 gggcgcgtgg ccgacgatcc agaactttcc gcagttcatg gcgatgagcc tgaagaaggt
     1021 caacgccgga gacggcgccg gcgaagacct ggcgcgccac tacctgatca agaacatccg
     1081 cgtcgagcag aagcacgccg accattgggt cgagtgggcc ggctcggtgg gcctcaccct
     1141 cggcgacctg cgccaggccg acgacctgca aggcatccac gcgctcgcgc actggtgctg
     1201 gtacgtgtgc gaccgcgcgc cgctggccgt ggccgtggcc gcgaccaact acgccgtcga
     1261 aggcgcgacc ggcgagtggg cgtgcgtcgt ctgctcgaag tcgacctacg ccgattcgct
     1321 gcccgaagac atccgcggcc cggcgacgcg gtggctgcgc ctgcacgcgg agtacgacga
     1381 cacgcacccc tgggaagcgc tcgacatcgt cgccaccctg ctcggcaacg cgccgcaaca
     1441 agccgacatc gacgccgtgc gccgcgccat ccactcgagc tacgcctaca tcgagatggg
     1501 cctcgacgac tcgatgtcgg tcgcgatgca cggcagcttc gacgagacgg cgtcgaacgc
     1561 gtcgacgctc ggggcgctcg acgcggcgta gcgaccatcg cgactgcgcg gccaacgctg
     1621 cgcggctgcg acaggagagc ctattcgacc gcgttcagcg aaggggcagt tcgctcgcct
     1681 cgtaggccac gagctcgggc gaatgcacag ccaagcgcgc cgcctgagcc gcgaactcgc
     1741 gtgacgccgg cacgcgaaag tgggcgagca aggcatcacg atcggcccag cgttcgaaga
     1801 agacgaggcg caagccgtcg ttcgcatcga ccgccacgcc atgctcgag
//
LOCUS       DASVHM010000165         2639 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_804546, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000165 DASVHM010000000
VERSION     DASVHM010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_804546"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..397
                     /locus_tag="VF308_03225"
     CDS             <1..397
                     /locus_tag="VF308_03225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX7435694.1"
                     /translation="ARGYGLSLDDFGTGYSSLSYLKRLPMDELKIDRAFVTDAARGGR
                     DGALAAAIIALGRELGLKVVAEGVETAAQSAFLLRRGCNVQQGYLFSRPVPAAEFERL
                     LGAGSILPREESAVPASVTRGSIDLRLRP"
     gene            468..1070
                     /locus_tag="VF308_03230"
     CDS             468..1070
                     /locus_tag="VF308_03230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020702784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX7435695.1"
                     /translation="MLRDLADPRRPLPGPRRTTDAPDAALVARAAAGDLRAFEALYRA
                     YHPRLGRFLGLLTSRQSVVEEALNDTMLVVWRRADAYNGQCKVSTWIFAIAYRTALKA
                     LRHQDDPVDDSSADELPSDAGGPEQQRSDRETRAALARALDGLSAEQRSVLVLTYFHD
                     LPYAEIAQIVDCPIDTVKTRMFHGRRRLRALLSGELGDWL"
     gene            1067..1702
                     /locus_tag="VF308_03235"
     CDS             1067..1702
                     /locus_tag="VF308_03235"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEX7435696.1"
                     /translation="MKARILALDSDEHRVVEALLPWFVNATLERTEASLVEAHLARCA
                     RCQADAAAQGRLRGLPVAAAPAGDIERDWAVLRNRLEAKPAAARPPTAPARGWRMRWL
                     PIAVGLQGALVLVLAVALFGSTRQVEPYRTLGAAPVTTTANALVVFRSDATEAEIRHA
                     LRASDARLVGGPTVTDAYLLRVPDLGPQALTRLRAQPGVARVESLEGSSPR"
     gene            1699..>2639
                     /locus_tag="VF308_03240"
     CDS             1699..>2639
                     /locus_tag="VF308_03240"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEX7435697.1"
                     /translation="MRALIVMRALIVAWVFCGLAAAAEPGSGPVSTGPGPQQQVLVLL
                     NLPAAHFRADGNYSGGYADAAGSSARRRIATALARAHGLSLVTDWPMPILGLDCYVME
                     VPVEHRPDDVAARLARDPRVAWAQAMNLFQPLAHDDPLFSLQPAAREWQLDALHAAAT
                     GRDVRIAVIDSGVQLDHPDLFEQVAVSANFAGNSTYQAEVHGTAVAGIIAARADNHVG
                     VAGVAPHARLLALRACWQAAPAETLCSTLSLALALNAAIERGAQIINLSLGGPPDRLI
                     QRLVEAALGRGISVVAAVNRSAPNGGFPAWLPGVVVV"
BASE COUNT          351 a          898 c          956 g          434 t
ORIGIN      
        1 cgcgagaggc tatggtttgt cgctggacga tttcggtacc ggctactcgt cgctcagcta
       61 cctgaagcgc ctgccgatgg acgagctgaa gatcgatcgc gcattcgtca ccgacgccgc
      121 gcggggcggc cgggacggcg cgctggccgc ggcgatcatc gcgcttgggc gggaactcgg
      181 gctgaaggtg gtggccgaag gtgtcgagac ggcggcacag tcggcgttcc tgttgcgtcg
      241 cggctgcaac gtgcagcagg gctatctgtt ttccaggccg gtgcctgcgg cggaattcga
      301 gcgcctgcta ggggccggct cgattctgcc gcgcgaggaa agcgcggtgc cggcgtcggt
      361 gaccaggggc tcgatcgacc tccgacttcg gccttgacgg gtgctttgcg ccgaatgaac
      421 ctttttgcgc cgcttggcat taacctccga ggcagaggaa ggtgtcgatg cttcgcgatc
      481 tcgctgaccc caggcggccg ttgcccggcc ccaggcgcac gaccgacgcc ccggacgcgg
      541 cgctcgttgc gcgcgcggcc gcgggcgact tgcgcgcatt cgaggcgctc tatcgcgcct
      601 atcacccgcg cctgggccgc ttcctcggcc tgctgacctc ccgtcaatcc gtggtcgagg
      661 aggcgctgaa cgacaccatg ctggtcgtct ggaggcgcgc cgacgcgtac aacgggcaat
      721 gcaaggtgtc gacctggatc ttcgcgatcg cgtatcgcac ggcgctcaag gccttgcgac
      781 accaggacga tcccgtcgac gattcttcgg ccgacgagct gccctccgac gccggcgggc
      841 cggaacagca acgcagcgac cgcgagacgc gcgccgctct ggcgcgcgcc ctcgacggct
      901 tgtcggccga gcagcgcagc gtcctggtgc tgacgtattt ccatgacctc ccgtacgcgg
      961 agatcgccca gatcgtcgat tgcccgatcg acacggtgaa gaccaggatg ttccacggcc
     1021 ggcgtcgcct tcgtgcgctc ctcagcggcg agctgggaga ctggttgtga aggcgcggat
     1081 cctcgccctc gacagcgacg aacatcgggt cgtggaagcg ctgctgccgt ggttcgtcaa
     1141 cgccacgctg gagcgcacgg aggcgtctct ggtcgaggcg catctggccc ggtgcgcgcg
     1201 ttgccaggcc gacgccgcgg cgcagggccg gctgcgaggc ttgcccgtcg ctgccgcgcc
     1261 ggccggcgac atcgagcgcg actgggccgt gctgcgcaat cgactcgagg ccaaacccgc
     1321 cgcggcgcgc cctccgaccg cgcctgcgcg agggtggcgg atgcgctggc tgccgatcgc
     1381 cgtgggcctg caaggggccc tcgtgctggt gctggcggtc gcgttgttcg gctcgacgcg
     1441 ccaggtcgag ccgtaccgga cactcggtgc cgcgccggtc acaacgaccg cgaatgcgct
     1501 ggtggttttt cgctccgacg ccaccgaggc cgagatccgg cacgccctgc gcgcgagcga
     1561 tgcccggttg gtcggcggcc cgaccgtgac ggatgcgtac ctgctgcgcg tgcccgacct
     1621 cgggccgcag gcgctgaccc gcttgcgtgc gcagccgggc gtggcgcgcg tcgagtcgct
     1681 cgaaggttcg agtccgagat gagggcgctg atcgtgatga gggcgctgat cgtggcctgg
     1741 gtgttctgcg gcctggccgc agcggccgaa ccgggcagcg ggccggtgtc gaccggcccc
     1801 gggccgcagc agcaggtgct ggtgctgctg aaccttccgg ccgcgcactt tcgagccgac
     1861 ggcaactact cgggcgggta tgccgatgcc gccgggagtt cggcgcggcg ccgcattgcg
     1921 acggcgctgg cgcgcgcgca cggcctgagc ctggtgaccg attggccgat gccgatcctg
     1981 ggtctggatt gttatgtgat ggaggtgccg gtcgagcacc gtccggacga tgtcgccgcc
     2041 cgcttggcgc gcgatccgcg tgtcgcatgg gcacaggcga tgaacctttt tcagcccttg
     2101 gcccatgacg atccgctctt cagcctgcaa ccggcggccc gcgagtggca gctcgacgcg
     2161 ctgcacgcgg cggcgaccgg acgcgacgtg cgcatcgcgg tcatcgacag cggagtccag
     2221 ctcgaccacc cagacctctt cgagcaggtc gcggtgagcg caaacttcgc cggcaatagc
     2281 acctaccagg ccgaagtcca tggcaccgcg gtggccggaa tcatcgccgc gcgtgccgac
     2341 aaccacgtgg gtgtcgccgg tgtcgcgccg cacgctcgtc tgctggcgtt gcgcgcatgc
     2401 tggcaggcgg cgccggccga gactctttgc tccaccttga gtctggcgct cgccctgaac
     2461 gcggcgatcg agcggggtgc gcagatcatc aacctcagcc tgggcggccc gcccgatcgg
     2521 ctgatccagc ggcttgtcga ggccgcgctt gggcggggca tcagcgtggt cgccgcggtg
     2581 aaccgttcgg cgcccaacgg gggctttccg gcttggctcc caggggtcgt cgtcgtgat
//
LOCUS       DASVHM010000166         1549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1237910, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000166 DASVHM010000000
VERSION     DASVHM010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1237910"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..1064
                     /locus_tag="VF308_03245"
     CDS             108..1064
                     /locus_tag="VF308_03245"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEX7435698.1"
                     /translation="MAVYTQVSFAEASALIDRLDIGTLTTLESCHGGIENTNYFIDTS
                     RGAWVLTLFERLTEAELPFYLHLMKHLAGRGIPVPEPQADAAGTLLHALKGKPAAVVN
                     RLPGHHHLAPDDAHAASVGAMLARMHLAGADFPQHQPTLRGLAWMAETVPVVVPYLDA
                     ERAGMIRDELGYQEQVAASPAYAALPRGVIHADLFRDNVMFDGDTLTGLFDFYFAGFD
                     TFLFDIAVCLNDWCIDLESGRLVEARASAFVAAYDRVRRLETTELRLMPALMRAAALR
                     FWTSRLWDLHLPRRAAVLTAHDPTHFERVLAQRRSAPWHHNR"
     gene            1096..>1549
                     /locus_tag="VF308_03250"
     CDS             1096..>1549
                     /locus_tag="VF308_03250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435699.1"
                     /translation="MKLQLVPARQGALWVRQGFAVFFRQPMGFAGLFAAFLFFVFALT
                     LLPVVGPVLLLALLPLGSLGFMVATRHALEGRFPLPRAFIEPLRTGRPRLLSIVKLGL
                     LYAAATWAILWLSDLIDGGALDALMEAQASGQVPPDVIAAKLADPRLEA"
BASE COUNT          194 a          611 c          479 g          265 t
ORIGIN      
        1 ctcgcgcgat ctttccgacg gcgccaacac ctcgcgcggc gccgccggca agcgcgtctg
       61 gcgcgtgctg aatttctgag ccggtcagct cccgacccgg ccgatcgatg gcggtctaca
      121 cgcaggtctc gttcgccgaa gcgtccgcgc tgatcgaccg cctcgacatc ggcacgctga
      181 ccaccctcga gagctgtcac ggcggcatcg agaacaccaa ctacttcatc gacacctcgc
      241 gcggcgcctg ggtattgacg ctcttcgaac gcctgaccga agccgaactg ccgttctacc
      301 tgcatctgat gaagcacctg gcgggccgcg gcatcccggt tccggagccg caggccgatg
      361 ccgccggcac cctgttgcat gccctcaagg gcaagcccgc tgccgtggtg aaccgcctgc
      421 ccggtcatca ccacctcgcc ccggacgacg cccacgcggc gagcgtcggc gccatgctgg
      481 cgcgcatgca cctcgcgggc gccgatttcc cgcagcacca accgaccttg cgcggcctgg
      541 cctggatggc cgagaccgtg ccggtggtcg tcccctacct cgacgccgag cgggccggga
      601 tgatccgcga cgaactcggc taccaggagc aggtcgccgc ctcgccggcc tacgcggcac
      661 tgccccgcgg cgtcatccat gccgacctgt tccgcgacaa cgtgatgttc gacggcgaca
      721 cgctcaccgg cctcttcgac ttctacttcg ccggattcga caccttcctg ttcgacatcg
      781 ccgtctgcct gaacgactgg tgcatcgacc tcgaatccgg gcgcctcgtc gaggcccgcg
      841 cgagcgcctt cgtcgccgcc tacgaccgcg tgcggcggct cgagaccacc gaactgcgcc
      901 tgatgccggc gctgatgcgc gccgccgcgc tgcgcttctg gacctcgcgg ctctgggacc
      961 tgcacctgcc gcgccgcgcc gccgtgctga ccgcccacga cccgacccac ttcgagcgcg
     1021 tgctggccca gcgccgttca gcgccgtggc accacaatcg ctgagagcct gtcgccgggc
     1081 tcgcgtcacg ccgccatgaa actccagctc gtcccggccc gtcagggcgc cctctgggtg
     1141 cgccagggct ttgccgtgtt cttccgccag ccgatgggct tcgccggcct gttcgcggcc
     1201 ttcctcttct tcgtcttcgc gctgaccctg ctgccggtcg tcgggccggt gctgctgctg
     1261 gccttgctgc cgctcggttc gctcggcttc atggtcgcga cgcggcatgc gctcgagggc
     1321 cggttcccgt tgccgcgcgc cttcatcgaa ccgctgcgca ccggccgccc gcgcctgctg
     1381 tcgatcgtca agctcgggct gctgtatgcg gccgcgacct gggcgatcct ctggctcagc
     1441 gacctgatcg acggcggcgc cctcgacgct ttgatggaag cccaggcctc cggtcaggtt
     1501 ccgcccgacg tcatcgctgc caagctcgcc gatccgcgcc tcgaggccg
//
LOCUS       DASVHM010000167         9685 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_228867, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000167 DASVHM010000000
VERSION     DASVHM010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 9685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9685
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228867"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..510)
                     /locus_tag="VF308_03255"
     CDS             complement(43..510)
                     /locus_tag="VF308_03255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEX7435700.1"
                     /translation="MEIDELVKAVQTLNADDAFRARLTLDNWRTIAPYLARYEIRAGD
                     LLIKQGDADRSMYFLAQGSMQIFMTGGPPGSSKVAILRAGAVVGEPGLFGDTPRMANV
                     EAMTPCVVWALRGPRMEELAQRSPALALELLRAAGAVMATRMRATLSKQAPIT"
     gene            complement(720..1778)
                     /locus_tag="VF308_03260"
     CDS             complement(720..1778)
                     /locus_tag="VF308_03260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008445553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX7435701.1"
                     /translation="MRFHQTVAAVALGAALAMPAYAGPPLVFNPFVSGASLSTLLAGN
                     NDTIGFAYAGDKFVGSVYFGPNNSQLYSSNLTGTGLALFGTPIAGFSGEIYVSASLGI
                     GGYGPRDVYAGSEAGGTVVRVAHDGSSQGVFASGLTGGVRSIAFDPYGLYGNQMVVAT
                     QAGNIYTVSNTGAATLLASVGEDAEGLSFAPQTFGTYAKGTLFVASEGSGILRAITPG
                     GTVTNAVTGLPGAEMVSFVPLNLGASGSLVEGFYAAAFPNDIQKADASQFAPYLGDAV
                     VTSETGHQVWQVHFNSGTGLFEVTQIGTFPAQPEDGIFVTADIIQNPIPEPETYALML
                     AGLGALGWFTRRRKAAAR"
     gene            complement(1849..3258)
                     /gene="mnmE"
                     /locus_tag="VF308_03265"
     CDS             complement(1849..3258)
                     /gene="mnmE"
                     /locus_tag="VF308_03265"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016447255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEX7435702.1"
                     /translation="MLPLARHEDPIVAVATASGRGAVGIVRVSGASLAPLVAAIRGRA
                     LTPRQATYGPFLDANGAPIDQGLAIFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCL
                     EAAAEPDASGAPRLAHLRIARPGEFTERAFLNDKLDLAQAEAVADLIDASTEAAARSA
                     ARSLDGAFSGEIDALADALIELRLLVEATLDFPEEEIDFLVSADAQGRLQRAEAGVDA
                     VLSRARQGALLRDGIRVVLAGQPNVGKSSLLNALAGAELAIVTATPGTTRDKVAQTIQ
                     IEGVPVHVVDTAGLRDAVDEVERIGVARTWAEIEGADAIVFLHDLTRLGEPGYEAGDA
                     AIAARLPAGLVGEGRLLHVFNKLDLQRSASVDDGLVVSALSGEGLDALRARLLAIAGW
                     QAAPEGLFIARARHVDALQRARRHLDLAAEHAGRGNAALELFAEELRLAHDALGEITG
                     AFTSDDLLGAIFGRFCIGK"
     gene            complement(3288..5042)
                     /gene="yidC"
                     /locus_tag="VF308_03270"
     CDS             complement(3288..5042)
                     /gene="yidC"
                     /locus_tag="VF308_03270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEX7435703.1"
                     /translation="MTDIRRTLLWGIFLASLFFIWESWNRHNGQPSMFGPPPARVVAP
                     ALPSPAPTPVPGSGLPGTATPAMPTTPPAASPVAAAPAASAPVASQQVTVSTDLVRAT
                     IDSTGATLARVELVKQVDPLDHSKSVVLLDRSPSRLYLAESGLVPPAGGAGLPNHHTS
                     MHVLPGERSLAPGQNEFKVAFESDPVGGVKLVKTYTFRRDDYVIDVRHQIVNASPAPI
                     SPRLYLQLVRDGNDPPGGSSMYFTFTGPAIYTDSAHYKKIDFKSIEKRGPGDKPDHET
                     SGSGGWVAMVQHYFLSAWLVDKPGAPAPAREFFTAKIDTNTYSVGELVPMGEIAPGAT
                     KTFDARLFVGPQEEDKLAGLAPGLELVKDYGWFTILAKPLFWLLTQLHKVIGNWGWSI
                     VGLVVLLKIAFYWLNAKAYGSMAKMKAINPRIMEMRERLKDKPQQMQQEMMRIYREEK
                     VNPLGGCLPIVVQMPFFIALYWVLLSTVEMRGAPWIGWITDLSQPDTLFGILPFIHMP
                     VGLLPILMTGTSLLQTWLNPTPPDPVQARMMWIMPLVFSVMFFFFPAGLVLYWLTNNI
                     LSIAQQYLINKRLGVLGK"
     gene            complement(5039..5347)
                     /gene="yidD"
                     /locus_tag="VF308_03275"
     CDS             complement(5039..5347)
                     /gene="yidD"
                     /locus_tag="VF308_03275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009516949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEX7435704.1"
                     /translation="MTSWPQAALIGAVRAYRFFLSPWLGSACRFEPTCSAYALEALGR
                     HGAAAGLALTAGRIGRCHPWCAGGFDPVPATPPRFFTALLGRAPRAAEPPRASSESTT
                     "
     gene            complement(5344..5844)
                     /locus_tag="VF308_03280"
     CDS             complement(5344..5844)
                     /locus_tag="VF308_03280"
                     /inference="COORDINATES: protein motif:HMM:NF013022.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEX7435705.1"
                     /translation="MPGRPGPAGPLPRLVVSADFERVLGLRSRAATAHFAVHHLAAQP
                     SPRAMALNRPPPAKLSTIEGPASPLPVEDLSDAALSPLRSWVGAIVPKRHARRAVTRS
                     LIKRQIYAATERHRDRLAPGLWIVRLRSPFDRARFASAASLALRRCARGELDALLAAA
                     VALPSP"
     gene            complement(5867..6001)
                     /gene="rpmH"
                     /locus_tag="VF308_03285"
     CDS             complement(5867..6001)
                     /gene="rpmH"
                     /locus_tag="VF308_03285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008650850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEX7435706.1"
                     /translation="MKRTYQASKVRRARTHGFLVRMKSRGGRAVINARRAKGRKRLAV
                     "
     gene            6237..7721
                     /gene="dnaA"
                     /locus_tag="VF308_03290"
     CDS             6237..7721
                     /gene="dnaA"
                     /locus_tag="VF308_03290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEX7435707.1"
                     /translation="MRSDLWQRGCERLASELPDQQFNTWIRPLPDADVADNGEAAVVT
                     VRVPNRFKLDWIRNQYAGRIEAVLSELAGKPVRLDVTLAQRDGGGRTGDAAPAAAGRP
                     VHFNAALRGSTSGAALAPGANGHAGNARDDNEGGGVANGVAYHAGNSPATLPSRSRLN
                     PALTFDTLVPGRANQMARTAALHVAGSPGLMYNPLFIYGGVGLGKTHLIHAVGNALLA
                     DRPDARILYLHAEQFITDVVKNYQRKTFDELKAKYHSLDLLLIDDVQFFAGKERTQEE
                     FFNAFEALLAKRAHIIMTSDTYPKGLVDIDERLTSRFDAGLTVAIEPPELEMRVAILM
                     KKADQEATPMPEDVAFFVAKNVRANVRELEGALRKILAYSRFSHKEINIALAREALKD
                     LLSIQNRQVGVENIQKTVADFYKIKVADMYSKKRPASIARPRQIAMYIAKEMTQKSLP
                     EIGELFGGRDHTTVLHAVRKIAAERQKNTDLNHQLHVLEQTLKG"
     gene            7964..9070
                     /gene="dnaN"
                     /locus_tag="VF308_03295"
     CDS             7964..9070
                     /gene="dnaN"
                     /locus_tag="VF308_03295"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019700677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEX7435708.1"
                     /translation="MIVLKAVQEKFLGALQAVSGIVERRHTLPILANVLVRKTGGMIE
                     FTTSDLEIQVRTSAELGGDASNFATTVGARKLIDILRSMPSDQTVTLSATQSKLTLAG
                     GKSRFTLQTMPADDFPLVQESADFGPMFSVPQKTLRGLIAQVHFAMAVHDIRYYLNGI
                     LFVAEGKSLTLVATDGHRLALAQANLETEIPKQEVILPRKTVLELQRLLKDDDTPIEM
                     RFAPNQAKFSFAGMEFVSKLVEGKFPDYNRVIPKNHKNRVTLGRSPLLQSLQRAAILT
                     SDKFKGVRVNIEPGTLRIASSNAEQEEAMEELEIDYGGDAVEIGFNVTYLIDALANMG
                     QEMVTVELQDTNSSALITVPDQAGFKYVVMPMRI"
     gene            9093..>9685
                     /locus_tag="VF308_03300"
     CDS             9093..>9685
                     /locus_tag="VF308_03300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013899295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX7435709.1"
                     /translation="MTSKDNQEDATPEIAGTHGDMASKSTNSPLNGSVLRDGVADTDS
                     ASYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGFCDDIV
                     VTIHTDNSISVIDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGG
                     LHGVGVSCVNGLSKWLRLTVRREGLTHYMEFRQGFPQ"
BASE COUNT         1653 a         3262 c         3364 g         1406 t
ORIGIN      
        1 cgccgggccg aagcggcgcc ggccccggcc tggccgccga ccctaggtga tcggcgcctg
       61 cttggagagc gtcgcgcgca tccgcgtcgc catcacggcg ccggccgcac gcagcagctc
      121 gagggcgagc gcgggcgagc gctgggcgag ctcttccatg cgcgggccgc gcaaggccca
      181 gacgacgcac ggcgtcatcg cctcgacgtt ggccatgcgc ggcgtgtcgc cgaacaggcc
      241 cggctcgccg acgacggcgc cggcgcgcag gatcgcgacc ttgctgctcc ccggcgggcc
      301 gccggtcatg aagatctgca tgctgccctg ggcgaggaag tacatcgagc gatcggcgtc
      361 gccttgcttg atgagaaggt cgccggcccg gatctcgtag cgcgcgaggt agggcgcgat
      421 cgtgcgccag ttgtcgagcg tcagccgggc gcgaaacgca tcgtctgcgt tgagcgtctg
      481 caccgccttg accagttcat cgatttccat tgccctgctc cgcctggccg ccggctccga
      541 agcggagcgg cgactcgatc tagggcggga ttatcggccg ggcggcacgg gccggttgtc
      601 cgtgcggccg acggagccgt ccatttgtcg cgttgcgccc gcgctcatcg cttcgacggc
      661 gatgcgcgag agcgtgcgcc cacggacggg ccaacgccga cgcggcgaac cggacggcgt
      721 cagcgcgccg cggccttcct gcggcgcgtg aaccagccca gcgcgccgag gccggccagc
      781 atcagcgcgt aggtctcggg ttcggggatg gggttctgga tgatgtcggc ggtgacgaag
      841 atgccgtctt cgggctgcgc cgggaacgtg ccgatctgcg tcacctcgaa caggccggtg
      901 ccgctgttga aatgcacctg ccagacctgg tggccggtct cgctcgtgac cacggcgtcg
      961 ccgaggtagg gagcgaactg cgacgcgtcg gccttctgga tgtcgttcgg gaacgcggcg
     1021 gcgtagaacc cttcgaccag gctgccgctc gcgcccaggt tgagcggcac gaagctcacc
     1081 atctcggcgc cgggcaggcc cgtgacggcg ttcgtgacgg tgcctccggg cgtgatcgcg
     1141 cgcaggatgc cgctgccttc ggaggcgacg aagagggttc ccttggcgta cgtgccgaaa
     1201 gtctgaggcg cgaagctcag gccctcggca tcctcgccga ccgaagcgag caacgtcgct
     1261 gcgccggtgt tgctgacggt gtagatgttg ccggcctggg tcgcgacgac catctggttg
     1321 ccgtacaggc cgtaggggtc gaaggcgatg ctgcgcacgc cgccggtcag gccgctcgcg
     1381 aacacgccct ggctcgagcc gtcgtgggcg acgcgaacga cggtgccgcc ggcttccgag
     1441 ccggcataga cgtcgcgcgg gccgtagccg ccgatgccga gcgatgcgct aacgtagatc
     1501 tcgccgctga agccggcgat cggcgtgccg aacaatgcca ggccggtgcc cgtcaggttg
     1561 ctcgagtaga gctggctgtt gttgggccca aagtagaccg agccgacgaa cttgtcgccc
     1621 gcgtaggcga agccgatcgt gtcgttgttg cccgcgagca gcgtgctcag cgaagcgccc
     1681 gagacgaagg gattgaagac cagaggcggg cccgcgtaag ccggcatcgc cagcgctgca
     1741 cccagggcga cggcggcaac ggtctgatga aatcgcatcg aagttctcct cgccaaaggc
     1801 gggagtctga cgccgaggtt ggcctgccaa tccctcgttt ccggggggtc acttgccgat
     1861 gcagaagcgc ccgaagatgg cgccgagcag atcgtccgac gtgaacgcgc cggtgatctc
     1921 gccgagcgcg tcgtgggcca ggcgcagctc ctccgcgaac agctccaggg cggcgttgcc
     1981 gcgcccggcg tgctcggccg cgaggtcgag gtgccggcgc gcgcgctgca gcgcgtcgac
     2041 atggcgcgcg cgggcgatga agaggccttc gggcgcggcc tgccagccgg cgatcgcgag
     2101 cagtcgcgcg cgcaaggcat cgagcccttc gccgctgagc gccgagacga cgaggccgtc
     2161 gtcgaccgac gccgagcgct gcaggtcgag cttgttgaag acatgcagca ggcggccttc
     2221 gccgaccagc ccggccggca gccgcgccgc gatcgccgca tcgcccgcct cgtagcccgg
     2281 ctcgccgagc cgggtgaggt cgtgcaggaa gacgatcgca tcggcgcctt cgatctcggc
     2341 ccaggtgcgc gcgacgccga tgcgctcgac ctcgtcgacc gcgtcgcgca ggccggcggt
     2401 gtcgacgacg tgcaccggaa cgccctcgat ctggatcgtc tgcgcaacct tgtcacgggt
     2461 cgttcccggc gtcgcggtga cgatcgccag ctctgcgccc gcgagcgcgt tgagcagcga
     2521 gctcttgccg acgttcggct ggccggcgag gacgacgcgg atgccgtcgc gcagcagcgc
     2581 gccctggcgc gcgcgcgaga gcaccgcgtc gacgccggcc tcggcacgct ggagccggcc
     2641 ttgcgcatcg gcggagacga ggaagtcgat ctcctcctcg gggaagtcga gcgtcgcctc
     2701 gacgagcagg cgcagctcga tcaaggcatc ggcgagggcg tcgatctcgc ccgagaacgc
     2761 gccgtcgagc gaacgcgccg ccgaacgcgc cgccgcttcg gtgctggcgt cgatcaggtc
     2821 ggcgacggcc tcggcctggg ccagatcgag cttgtcgttg aggaaggcgc gctcggtgaa
     2881 ttcgccgggg cgggcgatgc gcaggtgcgc caagcgcggc gcgcccgaag cgtcgggctc
     2941 ggcggctgcc tcgaggcagc gtgccaagag gagctgcagc acgaccggtc cgccgtgcgc
     3001 ctgcagctcg aggacgtcct cgccggtgta cgagtgcggc gccgggaaga agatcgccag
     3061 gccctggtcg atcggcgcgc cgttcgcgtc gaggaagggg ccgtaggtgg cttgccgcgg
     3121 cgtcagcgcg cggccgcgga ttgcggcgac gagcggcgcg agcgacgcac ccgagacgcg
     3181 gacgattccg accgcgccgc gcccgctcgc cgtcgcgacg gcgacgatcg gatcctcgtg
     3241 gcgcgccagc ggcagcatcg gatcgtccgg cagcgcaggc ggcgtcgcta cttgccgagc
     3301 acgcccagcc gcttgttgat caggtactgc tgcgcgatcg acaggatgtt gttggtcagc
     3361 cagtacagga cgaggccggc cgggaagaag aagaacatca ccgagaagac gagcggcatg
     3421 atccacatca tccgcgcctg caccgggtcg ggcggggtcg ggttgagcca ggtttgcaac
     3481 aggctcgtcc ccgtcatcag gatcggcagc aaccccacgg gcatgtgaat gaacggaaga
     3541 atgccgaaca aagtgtccgg ctgcgagagg tcggtgatcc agccgatcca gggcgcgcct
     3601 ctcatctcga ccgtcgacag cagcacccag tagagggcga tgaagaacgg catctgcacg
     3661 acgatcggca gacagccgcc gagcgggttg accttctcct cgcggtagat gcgcatcatc
     3721 tcctgctgca tctgctgcgg cttgtccttg aggcgctcgc gcatctccat gatgcgcgga
     3781 ttgatcgcct tcatcttggc catcgagccg taggccttgg cgttgagcca gtagaaggcg
     3841 atcttcaaca acacgaccag gccgacgatc gaccagcccc agttgccgat caccttgtgc
     3901 agctgcgtca gcagccagaa caggggcttg gcgaggatcg tgaaccagcc atagtccttg
     3961 accagctcga gcccgggggc gagaccggcg agcttgtctt cttcctgcgg gccgacgaag
     4021 agccgggcgt cgaaggtctt ggtcgcgccg ggcgcgatct cgcccatcgg caccagctcg
     4081 ccgaccgaat acgtgttggt gtcgatcttg gcggtgaaga actcgcgcgc cggcgcgggc
     4141 gcgccgggct tgtcgacgag ccaggcagac aggaagtagt gctgcaccat cgccacccag
     4201 ccgcccgaac cgctcgtctc gtggtcgggc ttgtcgcccg ggccgcgctt ctcgatcgac
     4261 ttgaaatcga tcttcttgta gtgcgcgctg tcggtgtaga tcgccggccc ggtgaacgtg
     4321 aagtacatgc tcgatccgcc gggcggatcg ttgccgtcgc ggaccagctg caggtacagg
     4381 cgcgggctga tcggcgccgg cgatgcgttg acgatctggt gccgcacgtc gatgacgtag
     4441 tcgtcgcgcc ggaaggtgta ggtcttgacc agcttgacgc cgccgaccgg gtcgctctcg
     4501 aaggcgacct tgaactcgtt ctggcccggc gcgagcgacc tttctcccgg cagcacgtgc
     4561 atcgacgtgt gatggttcgg cagaccggca ccgccggcgg gcggcacgag gccggactcg
     4621 gcgagataga gccggctcgg cgagcggtcg agcaggacga cgctcttcga atgatcgagc
     4681 gggtcgacct gcttgacgag ctcgacgcga gcgagcgtcg cgccggtgct gtcgatcgtc
     4741 gcgcggacga ggtcggtcga aacggtgacc tgctggctgg cgaccggcgc cgatgcggcc
     4801 ggcgccgcgg ccaccggcga agcggccgga ggcgtcgtcg gcatggccgg cgtggctgtc
     4861 cccggcagcc cgctgccggg gaccggcgtc ggcgcgggcg acggcaaggc gggcgcgacg
     4921 acgcgcgccg gcggcggacc gaacatcgac ggctggccgt tgtgccggtt ccacgactcc
     4981 caaatgaaga acagcgaggc caggaagatg ccccacagca aggttcggcg gatgtcggtc
     5041 atgtggtcga ttcggaagac gcgcgcggcg gttcggccgc gcgtggggcg cgcccgagca
     5101 gggcggtgaa gaagcggggc ggcgtcgccg gaaccggatc gaagccgccg gcgcaccacg
     5161 ggtggcagcg gccgatccgg ccggccgtca gcgccaggcc ggcggccgcg ccatggcggc
     5221 cgagcgcttc gagcgcatag gcggagcagg tcggctcgaa gcggcaggcg ctgccgagcc
     5281 aggggctcag gaagaaacgg tacgcgcgca ccgcgccgat cagcgcggcc tgcggccagg
     5341 atgtcatggc gacggcagcg cgacggccgc agcgagcaag gcgtcgagct cgccgcgggc
     5401 gcagcgccgc agcgccagcg acgccgcgct cgcgaaccgg gcccgatcga acggcgagcg
     5461 gaggcgaaca atccacaggc cgggcgccag tcggtcgcgg tggcgctcgg tcgcggcgta
     5521 gatctgtcgc ttgatgagcg accgggtcac agccctgcgc gcatgccgct tcgggacgat
     5581 cgcgccgacc cacgaacgga gcggcgaaag ggcggcgtcg gacaagtctt ccacaggcaa
     5641 tgggctcgcg ggtccctcga ttgttgataa ctttgccggc ggggggcggt tcaaggccat
     5701 tgcgcgaggc gaaggctgcg ccgcgaggtg gtgcactgcg aaatgggcgg tcgccgcccg
     5761 gctgcgcagg ccgaggacgc gctcgaagtc ggccgagacg accaggcggg gcagcggacc
     5821 ggccggaccg ggccgaccgg gcatgcgatc gccgcgcgcc gcgcgctcag accgcgaggc
     5881 gcttgcgccc cttggcgcgc cgggcgttga tgaccgcgcg gccgccgcgc gacttcatgc
     5941 ggacgagaaa gccatgggtg cgcgcgcggc ggaccttgga ggcttggtag gtgcgtttca
     6001 tgatggcttc ctggagcccg cgtgcgtcga agggcgcaag gcctgacggc ggaatatggc
     6061 gcccgttcgg gcaaccggcg attacagcaa gaacggcatc gcccgtcaac tgaaaaggcc
     6121 ttccagccgc cccggtgagg cattcgcgcg ccaccgtgtt ttcccctgtg gataactagc
     6181 gtctcgacgc cttcctcgca tacaatgcgg tgctttcccg ggccacttct ccacacatgc
     6241 gatccgacct ctggcaacgc ggctgcgaac gcttggcgtc cgaactgcct gaccagcaat
     6301 tcaacacctg gatccggccc cttcccgacg ccgacgtcgc cgacaacggc gaagccgccg
     6361 tcgtcaccgt gcgcgtcccg aatcgcttca agctcgactg gatccgcaac cagtacgccg
     6421 gccgcatcga agccgtcttg agcgagcttg cgggcaagcc ggtccgcctc gacgtcaccc
     6481 ttgcccagcg cgacggcggc gggcgcacgg gagatgccgc tccggccgcg gcgggtcgcc
     6541 cggtccactt caacgcggcg ctgcgcggct cgacgagcgg cgcggcgctc gccccgggcg
     6601 cgaacgggca cgccggcaac gccagggacg acaacgaagg cggtggcgtt gccaacggcg
     6661 tcgcctatca cgccggcaac tcgccggcga cgctgccgtc gcgcagccgg ctcaatccgg
     6721 cgctcacctt cgacaccctc gttcccggtc gcgccaacca gatggcgcgc accgccgcgc
     6781 tccacgtcgc cggctcgccc ggcctgatgt acaacccgct cttcatctac ggcggcgtcg
     6841 gcctcggcaa gacgcacctg atccacgccg tcggcaacgc cctcctcgcc gaccggcccg
     6901 acgcccgcat cctgtacctg cacgccgagc agttcatcac cgacgtggtg aagaactacc
     6961 agaggaagac cttcgacgag ctgaaggcga agtaccactc gctcgacctg ctcttgatcg
     7021 acgacgtcca gttcttcgcc ggcaaggaac gcacgcagga ggagttcttc aatgccttcg
     7081 aggcgctgct cgccaagcgc gcgcacatca tcatgacgag cgacacctat ccgaaaggat
     7141 tggtcgacat cgacgagcgg ctgacctcgc gcttcgacgc cgggctcacg gtcgcgatcg
     7201 agccgcccga gctcgagatg cgggtcgcga tcctgatgaa gaaggccgac caggaagcga
     7261 cgccgatgcc ggaggacgtc gccttcttcg tcgcaaaaaa cgttcgcgcc aatgtgcgcg
     7321 agctcgaagg cgcgctgcgc aagatcctcg cctactcgcg cttctcgcac aaggaaatca
     7381 acatcgcgct ggcacgcgag gcgctgaagg acctgctctc gatccagaac cgccaggtcg
     7441 gcgtcgagaa catccagaag acggtcgccg acttctacaa gatcaaggtc gccgacatgt
     7501 actccaagaa gcgcccggcc tcgatcgccc ggccgcgcca gatcgcgatg tacatcgcca
     7561 aggagatgac gcagaagagc ctgcccgaga tcggcgagct gttcggcggg cgcgaccaca
     7621 cgacggtgct gcacgcagtg aggaagatcg ccgccgagcg gcagaagaac accgatctca
     7681 accatcagct gcacgtgctc gagcagacgc tcaagggctg acgcgtgcga gccgacgatt
     7741 tctcgttctg tcaaggcaca aggctgggga caacgacgct ggcaactgcg agctgtccac
     7801 agcgaaaccg tttcgcggcg agttgttcgc tttcgtgcgc cccggcgcaa gggctcgatc
     7861 gacaggcttt gccgcggcct aagtgactgt ccgaaggaag gaaaatggcc ttgtccacag
     7921 ttgcgaccca cccctactac aacgaccagt tcaagaggtt gacatgattg tcttgaaagc
     7981 cgtacaagaa aaattcctgg gtgcgttgca ggccgtctcc ggaatcgtcg aacgtcggca
     8041 cacgctgccg atcctcgcca acgtgctcgt tcgcaagacc ggcggcatga tcgagttcac
     8101 caccagcgac ctcgagatcc aggtgcgaac gagtgccgag ctcggcggcg atgcgagcaa
     8161 cttcgcgacc acggtcggcg cgagaaagct gatcgacatc ctgcgctcga tgccgtcgga
     8221 ccagacggtg acgctgtcgg cgacgcagtc caagctcacc ctcgccggcg gcaagagccg
     8281 cttcacgctg cagacgatgc cggccgacga tttcccgctg gtgcaggaat cggccgactt
     8341 cgggccgatg ttcagcgtgc cgcagaagac gctgcgtggc ctgatcgcgc aggtgcactt
     8401 cgcgatggcg gtgcacgaca tccgctacta cctgaacggc atcctcttcg tcgccgaagg
     8461 caagagcctg accctggtcg cgaccgacgg ccaccgcctc gcgctggcgc aggccaacct
     8521 cgagaccgag atcccgaagc aggaggtgat cctgccgcgc aagaccgtgc tcgagctgca
     8581 gcggctgctc aaggacgacg acacgccgat cgagatgcgc ttcgcgccca accaggccaa
     8641 gttctcgttc gccgggatgg agttcgtctc caagctcgtc gagggcaagt tccccgacta
     8701 caaccgcgtc atcccgaaga accacaagaa ccgcgtcacc ctcggccggt cgcccttgct
     8761 gcagagcctg cagcgcgccg cgatcctgac cagcgacaag ttcaagggcg ttcgcgtcaa
     8821 catcgagccc ggcaccctgc gcatcgcgtc gtcgaacgcc gagcaggaag aagcgatgga
     8881 agagctcgag atcgactacg gcggcgacgc ggtcgagatc ggcttcaacg tcacctacct
     8941 gatcgacgcg ctcgccaaca tgggccagga gatggtcacc gtcgagctcc aggacaccaa
     9001 ctcgagcgcg ctgatcacgg tgcccgacca ggccggcttc aagtacgtcg tcatgccgat
     9061 gcggatctag ggtgagagca caagaacttt cgatgacctc caaagataac caggaagacg
     9121 ccacccccga gatcgccggc acgcacggcg acatggcgag caagtcgacg aacagcccgc
     9181 tcaacggctc agtgctgcgc gacggtgtgg ccgacaccga cagcgcgagc tacggcgagg
     9241 gctcgatcca gatcctcgaa gggctggagg cggttcgcaa acgccccggc atgtacatcg
     9301 gtgacacctc cgacggcacc ggcctgcacc acctcgtctt cgaggtcgtc gacaactcga
     9361 tcgacgaagc gctggcgggc ttttgcgacg acatcgtcgt caccatccat accgacaact
     9421 cgatctcggt catcgacaac ggccgcggca tcccgaccgg cgtgaagatg gacgacaagc
     9481 acgagcccaa gcgctcggct gccgagatcg cgctgaccga gctgcatgcc ggcggcaagt
     9541 tcaaccagaa cagctacaag gtctcgggtg gactgcacgg cgtgggcgtg tcgtgcgtga
     9601 acggcctgtc gaaatggctg cgcctcacgg tgcgacgcga ggggctgacg cactacatgg
     9661 agttccgcca gggctttccg caaga
//
LOCUS       DASVHM010000168         8542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_950904, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000168 DASVHM010000000
VERSION     DASVHM010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 8542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8542
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_950904"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..164)
                     /locus_tag="VF308_03305"
     CDS             complement(<1..164)
                     /locus_tag="VF308_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019430405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEX7435710.1"
                     /translation="MELLVNGQVRVVPDALADPGLPLLWALRDVFALTGTKFGCGIAA
                     CGACTVQVDG"
     gene            348..1358
                     /locus_tag="VF308_03310"
     CDS             348..1358
                     /locus_tag="VF308_03310"
                     /inference="COORDINATES: protein motif:HMM:NF024996.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HEX7435711.1"
                     /translation="MNRFASNAVAAALACAACASVHAQPAATIYGLLDMSAGRFQEPG
                     SAAVRSTESGGMSTSFLGIRGGDDLGGGLRARFGLETFIRVNEGAAGRSATDAFWGRT
                     AYAGLQGAFGTSLLGRLPTPLWLSTRLFNPFGDSLGFSPAIRQYFGGSVLGDSRWNNS
                     VAFSSPEVENGLSYSFQLNGNDGGVGATGRNVGANFIYTSGPLAATVAWQHVRNGAAP
                     LPAGFDHQSVYQIGASYELRWARLFGQAGIVKTRAALDVKSTPYQFGVAVPIGLGFVL
                     ASYGHAGTDSAGSTLTRKTVSLGYDHYLSKSTDIYAVLMNEQATGLASANTVAAGVRL
                     RF"
     gene            complement(1360..3072)
                     /locus_tag="VF308_03315"
     CDS             complement(1360..3072)
                     /locus_tag="VF308_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family metallopeptidase"
                     /protein_id="HEX7435712.1"
                     /translation="MTPMPPTPTPRFDTFYRYEALSRLLFEYAAAHPALVSIASIGKS
                     FEGRDIWVAAVTNTATGPDTEKPAFWADGNIHAAELTASTAVLYYLHQLVIGYGSDAR
                     ITELLDTRVVYLCPRLNPDGAELALADAPRHIRSSTRRYPFEEDPVDGLTAEDIDGDG
                     RILFMRVPDPHGAYKKCEQDARLMVARQPGEFGGEYYRLMPEGLLKNYDGLNITVNPD
                     VEGLDLNRNFPSFWRQEFEQTGAGDYPTSEPEVKAMVDFILKHPNIGAAISYHTHSGV
                     ILRPMGTQSDDDMIPEDLWSIKRFSEIGAKLTGYPAISIWHDFKYHPKEVISGTQDWV
                     YEHLGALFWVVEIWAPNKAAGIHEYKWVDWYRDHPVEDDLKLIKWSDEHCGGQAHADW
                     RPFMHPQLGAVEIGGWDKMNFWRNPPPHLREREAARFPAWMTQIALSLPRLEVLRTEV
                     RALGPDTWRIKLAVANSGWLPAYVSKRALARKIVRGVMFEIHLPEGNAEVSLVSGKPR
                     MEGPQLEGHAPKTSLNAFLPSREVTADRAVVEWVVRAPKGTRLVLSARADRAGVVRAE
                     VSLD"
     gene            complement(3080..3838)
                     /locus_tag="VF308_03320"
     CDS             complement(3080..3838)
                     /locus_tag="VF308_03320"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HEX7435713.1"
                     /translation="MCQLLGLNANTPTDVMFSFTGFATRAEEHKDGFGIAFFEGPGVR
                     LLVDAQSARTSPVAEMVRRFPIKSDNIVAHIRKATQGRIALENTHPFVRELWGRYWTF
                     AHNGDLQRFAPRLHGAFHPVGQTDSERAFCWLMQEFAKAHASVPSARELTATLAELVP
                     AVAAHGSFNFMLSNGEALWAHCSTRLHHVVRQHPFTRASLQDEDVTVDFAQVTSPRDR
                     VAVVVTEPLTHDEVWTAFAPGELKVFVDGAPITG"
     gene            complement(4586..5101)
                     /locus_tag="VF308_03325"
                     /pseudo
     CDS             complement(4586..5101)
                     /locus_tag="VF308_03325"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
     gene            complement(5125..6561)
                     /locus_tag="VF308_03330"
     CDS             complement(5125..6561)
                     /locus_tag="VF308_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009871335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEX7435714.1"
                     /translation="MPDPDIHSRAALAQRFGRNYRWWVLLTVMIGTMASIMASTIVNV
                     AVPDMSRVFALGQERAQWLSAGFMAAMTLSMLTTPWLLERYGYRHTYSGAVLLLMAGG
                     ICGGLSQSFGLILGMRVAEGLAAGVLQPIPAIIVLHAFEPGEQGKAMGIFGFGVVLAP
                     AIGPSVGGVLVEWWGWRSIFFVVTPFCVVALLLARRYLPIGAPGGGPINRHGERIDLV
                     GLALIAAAVLALLNGMVNLQGGAHELALALLGGSAVAVVGFVLHQRRSAHPLMRLDLF
                     GHRPFAMGGCVAFIYGMGLFGSTYLVPVFMQIALHLPPSQAGAVLLPAGLVLAVTIPL
                     AGRLADRWPVNRVVAIGLVLLALSFALMITVGIATALWLITLWASIGRVGLGFVLPSL
                     NLGSMRGLPHRSISHGSSTINFLRQLGGAVGISLVGSVLEWRLQAEAVDPLRAFHETF
                     ALVGLITACAVVAAWRMGSRPRLAVAAP"
     gene            complement(6621..8213)
                     /gene="aceB"
                     /locus_tag="VF308_03335"
     CDS             complement(6621..8213)
                     /gene="aceB"
                     /locus_tag="VF308_03335"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013957087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004474 - malate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HEX7435715.1"
                     /translation="MNLALPEGMQINAPILPGFESILTRPALDLVAKLHRAFEPRRQE
                     LLAARAERAKRLDAGERPDFLAETKAIRDGDWKVAPIPAALHCRRVEITGPVDAKMVI
                     NAFNSGADSYMTDFEDSNSPLWSNQIQGQINLVKAIRRTLTLDQETAAGTKTYRLNEK
                     IATLQVRPRGWHLEEKHVLVDGRRVHGGLFDFALFMFHNAAELIARGAGPYFYLPKIE
                     SHLEARLWNDVFVMTQDELGLAQGTIKATVLIETILAAFEMDEILYELREHSAGLNAG
                     RWDYIFSCIKKFKHDRNFCLADRSRITMRVPFMEAYALLLLKTCHHRGAPAIGGMNAQ
                     IPVKNDPALHKRAVDAVRADKSRAAIDGYDGAWVAHPGLVDAAMEEFVKVLGDKPNQF
                     EKLRPDVEVTAADLLNFQPEAPITEAGLRMNINVGIHYLGAWLAGNGCVPIHNLMEDA
                     ATAEISRSQVWQWIRTPKGVLDDGRRITAELVKALVPEELAKIKAGGFTGKFDRAAEI
                     FTQMSTQDTFAEFLTLPLYEEI"
     gene            complement(8238..>8542)
                     /locus_tag="VF308_03340"
     CDS             complement(8238..>8542)
                     /locus_tag="VF308_03340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="haloacid dehalogenase"
                     /protein_id="HEX7435716.1"
                     /translation="DMLAELVDHAGLADLLAPVLSVHETGRFKTDPAAYALGPLALNL
                     QAAEILFVSSNCWDAIGATWFGYTTLWVNRFGLPLDPLEARPTRTGSSLRDVLTFF"
BASE COUNT         1353 a         2903 c         2944 g         1342 t
ORIGIN      
        1 tggccgtcga cctgcaccgt gcaggcgccg cacgccgcga taccacaacc gaatttcgtc
       61 cccgtcagcg cgaagacatc gcgcagcgcc cacagcagcg gcaggccggg atcggccagc
      121 gcatcgggca cgactcggac ctgaccattg actaaaagct ccacgtgccc tcctcgcctc
      181 gacgcagcca ggcgccgatt gtgggacgat tctcggatgg atcggcctgc gccgactgtg
      241 gtgcgaacgt aacgttccgc acatccgcaa acgtcaatcg ttccccctcg ccgcgcgggc
      301 ggcaatggct gccacaaaat ccttcactcc tcacgccgac cgactccatg aatcgtttcg
      361 cctcgaacgc cgtcgccgcg gccctggctt gcgcggcctg cgcgagtgtc cacgcgcagc
      421 ccgctgcgac gatctacggc ttgctcgaca tgtcggcagg ccgtttccag gagcccggca
      481 gcgccgccgt gcggagcacc gaaagcggcg gcatgtcgac gagctttctc ggcatccgcg
      541 gcggcgacga cctgggcggc ggcctgcgcg cgcgcttcgg cctcgagacc ttcatccgcg
      601 tcaacgaagg cgccgccggg cgctcggcca ccgatgcatt ctggggccgc accgcctatg
      661 ccgggctgca gggcgcgttc ggcacctcgc tgctcggccg gctgccgaca ccgctgtggc
      721 tgtcgacccg gcttttcaat ccgttcggcg attcgctcgg cttctcgccg gcgatccgcc
      781 agtatttcgg cgggtcggtg ctcggcgact cgcgctggaa caattccgtc gccttttcga
      841 gcccggaggt cgaaaacggt ctcagctaca gcttccagct caacggcaac gacggcggcg
      901 tcggcgcaac cggaagaaat gtcggcgcaa acttcatcta cacctcgggc ccgcttgcgg
      961 cgaccgtcgc ctggcagcac gttcgcaacg gtgccgcgcc gctgccggcg ggcttcgatc
     1021 atcaaagcgt ctaccagatc ggcgcttcgt acgagttgcg ctgggcccgg cttttcggcc
     1081 aggccggcat cgtgaagacc cgcgccgccc tcgacgtcaa gtcgacgccc taccagttcg
     1141 gcgtggcggt cccgatcggc ctcggcttcg tgctggcctc gtacgggcac gccggcaccg
     1201 acagcgcggg cagcaccctc acccgcaaga ccgtttcgct cggctacgac cactacctgt
     1261 cgaagagcac cgacatctat gcggtgctga tgaacgagca ggcgaccggc ctcgcgtcgg
     1321 ccaacaccgt cgcggccggg gtccggcttc gcttctgacc tagtcgaggc tgacttcggc
     1381 gcgtacgacg ccggcgcgat ccgcgcgcgc gctgagcacg agccgcgtgc ccttgggcgc
     1441 gcgcacgacc cattcgacga ctgcgcggtc ggcggtgacc tcgcggctcg gcaaaaacgc
     1501 gttgagcgaa gtcttcggcg catggccttc aagctgcggg ccttccatgc gcggcttgcc
     1561 gctgaccaac gagacctcgg cgttgccctc gggaagatgg atctcgaaca tcaccccgcg
     1621 cacgatcttg cgcgccagcg cccgcttgct cacgtacgcc ggcagccagc cgctgttggc
     1681 caccgccagc ttgatgcgcc aggtgtcggg gccgagcgca cggacctcgg tgcgcagcac
     1741 ctcgagcctt ggcagcgaca gcgcgatctg cgtcatccag gccgggaacc gtgcggcttc
     1801 gcgctcgcgc aggtgcggcg gcgggttgcg ccagaagttc atcttgtccc agccgccgat
     1861 ctcgaccgcg ccgagctgcg ggtgcatgaa ggggcgccaa tcggcatggg cctggccgcc
     1921 gcagtgctcg tcgctccact tgatgagttt caggtcgtcc tcgaccggat ggtcacggta
     1981 ccagtcgacc cacttgtact cgtgaatgcc ggctgccttg ttgggggccc agatctcgac
     2041 gacccagaag agcgcgccga ggtgctcgta gacccagtcc tgggtgccgc tgatgacttc
     2101 cttggggtgg tacttgaagt cgtgccagat gctgatcgcc ggatagccgg tgagcttggc
     2161 gccgatctcg ctgaagcgct tgatcgacca caggtcctcg gggatcatgt cgtcgtcgct
     2221 ctgcgttccc atcggcctca ggatcacgcc gctgtgggtg tgatagctga tggcggcgcc
     2281 gatgttcggg tgcttcagga tgaagtcgac catcgccttg acttcgggct cgctggtcgg
     2341 atagtcgccg gcacccgtct gctcgaactc ctggcgccag aacgagggga agttgcgatt
     2401 caggtcgagc ccttcgacat cggggttgac cgtgatgttc agcccatcgt agtttttcag
     2461 caggccttcg ggcatcagcc ggtagtactc gccgccgaat tcacccggct ggcgcgccac
     2521 catcagccgc gcgtcctgct cgcacttctt gtaggcgccg tgcggatccg ggacgcgcat
     2581 gaagaggatg cggccgtcgc cgtcgatgtc ttccgcggtc aggccgtcga ccgggtcttc
     2641 ctcgaacgga tagcgccgcg tcgacgagcg gatgtggcgc ggcgcatcgg ccagcgcgag
     2701 ctcggcgccg tcggggttga ggcgcgggca caggtacacg acgcgcgtgt cgagcagctc
     2761 cgtgatccgc gcgtccgacc cgtagccgat gacgagctgg tgcaggtagt agagcaccgc
     2821 ggtgctcgcg gtgagctcgg ccgcgtgaat gttgccgtcg gcccagaacg cgggcttttc
     2881 ggtatcgggt ccggtcgcgg tgttggtgac ggccgccacc cagatgtcgc gcccttcgaa
     2941 gctcttgccg atcgacgcga tcgacaccag cgccggatgg gccgcggcgt actcgaagag
     3001 aagccgggac agggcctcgt agcgatagaa ggtgtcgaaa cggggcgtcg gggtgggtgg
     3061 catcggtgtc atggcggaat tatcccgtga tcggggcgcc gtccacgaac accttgagct
     3121 cgccgggcgc gaacgcggtc cagacctcgt cgtgcgtgag cggttcggtg acgaccacgg
     3181 cgacgcggtc gcgcggcgac gtgacctggg cgaaatcgac ggtcacgtct tcgtcctgca
     3241 gcgatgcccg cgtgaacgga tgctggcgca ccacgtggtg caggcgcgtc gagcaatgcg
     3301 cccagagcgc ctcgccgttg ctgagcatga agttgaagct gccgtgcgcg gcgacggccg
     3361 gtaccagttc ggcaagcgtt gcggtcagct cgcgggccga ggggacgctc gcatgcgcct
     3421 tcgcgaattc ctgcatcagc cagcagaacg cgcgctcgct gtcggtctgg ccgaccgggt
     3481 ggaacgcgcc gtgcaggcgc ggcgcgaagc gttgcagatc gccgttgtgc gcgaaggtcc
     3541 agtagcgccc ccacagttcg cgcacgaagg gatgcgtgtt ctcgagcgcg atccggccct
     3601 gcgtggcctt gcggatgtgg gcgacgatgt tgtcgctctt gatcggaaag cgccgcacca
     3661 tctcggccac cggcgacgtg cgcgcgcttt gcgcgtcgac cagcagccgc acgccgggcc
     3721 cttcgaagaa ggcgatgccg aagccgtcct tgtgttcctc ggcgcgcgtc gcgaaacccg
     3781 tgaagctgaa catcacgtcg gtcggcgtgt tcgcgttcag gccgaggagt tggcacatgc
     3841 aattgccgca gccgcgttcg aagaagagcc gcatccagct cttgaagctg acgaggttgc
     3901 ccggcatgtg ggtttcctcg agcaccccgc tcatccgctt caggcggcgc gggctgcgcc
     3961 gcgcgctcca ggcgagcagc tcgaccagcc acggatgggc gttgacggtg ttcgccttct
     4021 cgtagaccgc gaagcgcggc ttcaacgcca cgacctgcgc ctcgtaggcg ctgcgcacca
     4081 ccgcctccgg catctgcgtg cgccgccctg ccagcacggc ttcggcggcg aggatgccgg
     4141 tctcgagcgc cttgccgatg ccttcaccgg taaacgcgta ggtactgccg gcggcctcgc
     4201 cggtgaccag caggccggcg cgcgaatagc gggcgccttc gagcgaacag cgcagcggcg
     4261 cgcccttcaa ttcgccgatc cattgcccgc cggcgacgag ctcgcgcgcc ggcgcgtaga
     4321 cctcggtgag ggcgcggaac gaatcgcgca ggttcacgtc ctgcatcgtg gtgcggccgt
     4381 catcgccttt ggcgtggctg tgcgcgatgc cgacgccgat gttgaagacg ccgtccgggc
     4441 acgggaagat ccagccatag ccgggcttga gacgcgggtg ccagagaact tcgagctcgg
     4501 tgatgcgagt cgtcatcgcc gggttgcgca cgtagccgcg cagcgcgatc gcgctcggcg
     4561 tgcgccgttc gcagacgccc gccgcgatca gcgcctgcgg caccgcgccg gtggcgagaa
     4621 tcacccaccc ggcccgcact tctcgcagca cgccggcggc ctgcagacgc gccccgacca
     4681 cctgttgcac gccggcgcgc tcctcctcga gcgcggcgac gaagcgcagc ggcgcgaaca
     4741 tgcgcgcgcc ggccgcgacc gccgcgcggc acaacacctc gtcaaggcgc cggcgctgca
     4801 gcacagccag cgtccccggc acgtcgatgc gcccgccgcg cgggccgatg caggcgatat
     4861 gacgggcgtg ctgcgcgagc gccatcacct cgccgagcac gccgagcctg cgcatcgcat
     4921 ggtgggcatc gggaatcagc ccgtcgccgc agaccttgtc gcgcggaaag gcctgggcat
     4981 cgaccagcac cacgtcgagg ccgccgcgcg cgagcgtttg cgccgccgcg ctgccggccg
     5041 ggccggcgcc gaccacgagc acgtcgcagg cggcgggaag ggcgtcgatg ccgaggttca
     5101 tcgcggtgca gagcggcgcg gccttcaggg cgccgccacc gcgaggcgcg gccgcgagcc
     5161 catgcgccac gccgcgacca ccgcgcacgc ggtgatcagg ccgaccagcg cgaaggtttc
     5221 atggaaggcg cgcagcgggt cgacggcctc ggcctgaagg cgccattcga gcacgctgcc
     5281 gacgaggctg atgccgaccg cgccgccgag ctggcgcagg aagttgatcg tgctcgagcc
     5341 gtgcgagatc gagcgatgcg ggagcccccg catcgagccg aggttgagcg agggcagcac
     5401 gaagccgagg ccgacccggc cgatcgaggc ccagagcgtg atcagccaga gcgccgtggc
     5461 gatgccgacc gtgatcatca gcgcgaacga caacgccagc agcacgagcc cgatggcgac
     5521 gacgcggttg accggccagc gatcggccag gcgcccggcc agcggaatcg tcacggcgag
     5581 caccagcccg gccggcaaca gcaccgcgcc ggcctgcgaa ggcggcaggt gcagcgcgat
     5641 ctgcatgaac accggaacca gataggtcga tccgaagagg cccatgccgt agatgaacgc
     5701 gacgcacccg cccatcgcga agggacggtg accgaagaga tcgagccgca tcagcgggtg
     5761 cgcgctgcgg cgctggtgca agacgaagcc caccaccgcg accgccgagc cgccgagcaa
     5821 ggcaagggcg agttcgtgcg cgccgccctg caggttcacc atgccgttga ggagcgccag
     5881 caccgccgcc gcgatgaggg ccaggccgac gaggtcgatg cgctcgccgt ggcggttgat
     5941 cgggcccccg ccgggtgccc cgatcggcag gtagcgccgc gcgagcagca gcgccacgac
     6001 gcagaagggc gtgacgacga agaagatcga gcgccagccc caccactcga cgagcacgcc
     6061 gcccacgctc gggccgatcg ccggggcgag aacgacgccg aagccgaaga tgcccatcgc
     6121 cttgccctgc tcgcccggtt cgaaggcgtg cagaacgatg atcgcgggga tcggctgcaa
     6181 cacgcctgcg gcgagccctt cggccacgcg catgccgagg atcaggccga acgactggct
     6241 caggccgccg cagatgccgc ccgccatcag cagcagcacc gccccactgt acgtgtggcg
     6301 ataaccgtag cgctcgagca gccacggcgt ggtgagcatc gacagcgtca tcgccgccat
     6361 gaagccggcg gagagccatt gcgcgcgttc ctggccgagc gcgaacaccc ggctcatgtc
     6421 gggtaccgcg acgttgacga tggtcgacgc catgatcgac gccatcgtcc cgatcatcac
     6481 cgtcagcagc acccaccaac ggtagttccg gccgaatcgc tgagccaggg cggcgcggga
     6541 atggatgtcg ggatcgggca tcgatgcggc ggcgggacga accgacggat tgtcccgcaa
     6601 cgccgcggcc gccccgggcc tcagatctcc tcgtagagcg gcagcgtcag gaactccgcg
     6661 aaggtgtcct gggtgctcat ctgcgtgaag atctcggcgg cgcgatcgaa cttgccggtg
     6721 aagccgccgg ccttgatctt ggcgagctcc tcgggcacca gcgccttcac gagctcggcc
     6781 gtgatgcgcc ggccgtcgtc gagcacgccc ttgggcgtgc ggatccactg ccagacctga
     6841 ctgcggctga tctcggccgt ggcggcgtct tccatcaggt tgtggatcgg cacgcagccg
     6901 ttgccggcga gccaggcacc gaggtagtgg atgccgacgt tgatgttcat gcgcagcccg
     6961 gcttcggtga tcggcgcctc gggctggaag ttcagcagat cggcggccgt gacctcgaca
     7021 tcgggccgaa gcttctcgaa ctggttcggc ttgtcgccga gcaccttgac gaactcctcc
     7081 atcgccgcgt cgaccaagcc cgggtgggcg acccaggctc cgtcatagcc gtcgatggcg
     7141 gcgcgcgact tgtcggcgcg caccgcgtcg accgcgcgct tgtgcagcgc ggggtcgttc
     7201 ttgaccggga tctgtgcgtt catgccgccg atggccggcg cgccgcggtg gtggcaggtc
     7261 ttgagcagca gcagcgcgta cgcctccatg aagggcacac gcatcgtgat ccggctgcgg
     7321 tcagcgaggc agaagttgcg gtcgtgcttg aatttcttga tgcagctgaa gatgtagtcc
     7381 cagcggccgg cattgagccc ggcgctgtgc tcgcgcagct cgtagaggat ctcatccatc
     7441 tcgaacgcgg ccaggatcgt ctcgatcagc accgtcgcct tgatcgtgcc ctgcgccagg
     7501 ccgagctcgt cttgcgtcat cacgaaaacg tcgttccaga gccgcgcttc gagatggctt
     7561 tcgatcttcg gcaagtagaa ataaggcccg gcgccgcgcg cgatgagctc cgccgcgttg
     7621 tgaaacatga agagcgcgaa atcgaagagg ccgccatgga cgcgccggcc gtcgacgagc
     7681 acgtgcttct cctcgaggtg ccagccgcgc gggcgcacct gcagcgtcgc gatcttttcg
     7741 ttgagcctgt acgtcttcgt gccagccgct gtttcctggt cgagcgtcag cgtgcggcgg
     7801 atcgccttga cgaggttgat ctggccctgg atctggttcg accacagcgg cgagttgctg
     7861 tcctcgaagt cggtcatgta cgagtcggcg cccgagttga acgcgttgat gaccatcttt
     7921 gcatcgaccg ggccggtgat ctcgacgcgg cggcagtgca gcgcggccgg gatcggtgcg
     7981 accttccagt cgccgtcgcg gatcgccttc gtctcggcga ggaaatcggg gcgctcgccg
     8041 gcgtcgaggc gctttgcgcg ctcggcgcgt gccgccagca actcctgacg gcgtggctcg
     8101 aaagcacggt gaagcttggc gacgaggtcg agcgccggcc gggtcaggat ggattcgaag
     8161 ccgggcagga tcggcgcgtt gatctgcatg ccttcgggaa gggccaggtt catgatgagg
     8221 gtggttttcc gtgaagttca aaaaaaggtc agcacgtcgc gcaggctcga accggtgcgg
     8281 gtcgggcggg cttcgagcgg atcgagcggc aggccgaagc ggttgaccca gagagtcgtg
     8341 tagccgaacc aagtggcacc gatcgcatcc cagcaattgc tcgacacgaa gaggatctcg
     8401 gccgcttgca agttcagcgc cagtgggccc agggcatagg ccgccgggtc ggtcttgaag
     8461 cggccggtct cgtgaacgct cagcaccggc gccagcagat ccgcgaggcc ggcatggtcg
     8521 accagctcgg cgagcatgtc cg
//
LOCUS       DASVHM010000169         2201 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1165694, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000169 DASVHM010000000
VERSION     DASVHM010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1165694"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2201)
                     /locus_tag="VF308_03345"
     CDS             complement(<1..>2201)
                     /locus_tag="VF308_03345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006164566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HEX7435717.1"
                     /translation="ASYVDLTTAYTNKELAYSPGVADACMAIVDDPREAGNLTARSNL
                     VAVITNGTAVLGLGNIGPLASKPVMEGKGCLFKKFAGIDVFDIELAENDPDALIETIA
                     RMEPTFGGINLEDIKAPECFYIETRLRERMKIPVFHDDQHGTAIVAAAAILNALKHVG
                     KDIAEVKLVASGAGAAALACLDLAVSLGLKRENILVSDAKGVVYLGRTDGMDPNKARY
                     ARDTSARTLAEIIPRADVFLGLSAGNVLTPEMVKAMARDPIILAMANPTPEILPEEAL
                     AVRPDAVIGTGRSDYPNQVNNVLCFPFIFRGALDTGATTINEAMKLAAVRAIAELTHQ
                     EIPEVVAQAYGAVGLRFGRDYLIPKPFDPRLIEVVAPAVAQAAMDSGVATRPIKDMPA
                     YRRRLSQFVYQSGSSMQPLFAAAKHAPKRVVYAEGEDERVLRAAQVVVDEGLARPLLL
                     GRPDVIAQRMAEFGLRLEIGKDCDTVDPLDPAVYGDAADAYFDLKRRDGVSRPAARVE
                     VRSRATLLAAMLVRQGKADAMLCGTFGSYGEHLRHVRDVIGMRPGTKTLAAMQMLMLP
                     GRQLFIVDTHVNRDPSAEQVAEIALLAAEEVRRFGVTPSVALLSHSSFGGSDAASAVK
                     MRQALVLIQARDPQLAVEGEMRGDAALSKTILDREFPDSNLTTEANVLVMPNVDAANI
                     SYNLLRIAAGNGITVGGILLGAARPVHILAPSATVRRIVNMTALAVVDATS"
BASE COUNT          313 a          732 c          800 g          356 t
ORIGIN      
        1 gcgaggtcgc gtcgacgacg gccagcgccg tcatgttgac gatgcgccgc accgtcgccg
       61 acggggccag gatgtgcacc ggcctggcgg cgccgagcag gatgccgccg accgtgatgc
      121 cgttgccggc ggcgatgcgc agcaggttgt aggagatgtt ggcggcatcg acgttcggca
      181 tcacgagcac gttggcttcg gtcgtgaggt tcgaatccgg gaactcgcgg tcgaggatgg
      241 tcttcgagag cgccgcgtcg ccgcgcatct cgccttcgac cgcgagctgc gggtcgcgtg
      301 cctggatcag gaccagcgcc tggcgcatct tgaccgcgga ggccgcatcc gacccgccga
      361 agctcgagtg cgacagcagc gcgacgctcg gcgtcacgcc gaagcgtcgc acctcttcgg
      421 cagccaggag cgcgatctcg gcaacctgct cggcgctcgg gtcgcggttg acgtgcgtgt
      481 cgacgatgaa gagctgccgc ccgggcagca tcagcatctg catcgcggcg agcgtcttcg
      541 tgccgggacg catgccgatc acgtcgcgga cgtggcgcag gtgctcgccg tagctgccga
      601 acgtgccgca caacatcgcg tcggccttcc cttggcgcac gagcatcgcc gcgagcagcg
      661 tcgcgcggct gcgcacctcg acgcgggccg cagggcggga gaccccatcg cggcgcttga
      721 ggtcgaagta ggcatcggcc gcgtcgccgt agaccgccgg atcgagcggg tcgacggtgt
      781 cgcagtcttt cccgatctcg aggcgcaggc cgaactcggc catgcgttgg gcgatgacgt
      841 cgggccgccc gagcagcaac ggccgcgcga ggccttcgtc gaccacgacc tgggcggcgc
      901 gcagcacgcg ctcgtcctcg ccctccgcgt agacgacgcg cttgggcgca tgcttcgcag
      961 cggcgaacag cggctgcatg ctgctgcccg actggtagac gaactgcgac aggcgccggc
     1021 ggtaggccgg catgtccttg atcggccggg tcgcgacgcc gctgtccatg gcggcttgcg
     1081 ccactgccgg cgcgaccacc tcgatgaggc gcggatcgaa cggcttcggg atcaggtagt
     1141 cgcggccgaa gcggaggccc accgcgccgt aggcctgcgc cacgacctcg gggatttcct
     1201 ggtgcgtcag ctcggcgatc gcgcgaacgg ccgccagctt catcgcttcg ttgatcgtgg
     1261 tcgcgccggt gtcgagcgcg ccgcggaaga tgaacgggaa gcagaggacg ttgttgacct
     1321 ggttcggata gtcggagcgg ccggtgccga tgaccgcgtc gggccgcacc gcgagcgcct
     1381 cctcggggag gatttccggc gtcgggttgg ccatcgcgag gatgatcggg tcgcgcgcca
     1441 tcgccttcac catctccggc gtcagcacgt tgcccgccga gaggccgagg aagacatcgg
     1501 cgcgcgggat gatctcggcc agggtgcggg cgctggtgtc gcgggcgtag cgcgccttgt
     1561 tcgggtccat gccgtcggtg cggccgaggt acaccacgcc cttggcatcg ctgacgagga
     1621 tgttctcgcg cttcagcccg aggctcacgg ccaggtcgag gcaggcgagc gccgccgcgc
     1681 cggcgccgga agcgacaagc ttcacctcgg cgatgtcctt gccgacgtgc ttcaaggcat
     1741 tgaggatcgc cgcggcggcg acgatcgcgg tgccgtgctg gtcgtcgtgg aagaccggga
     1801 tcttcatgcg ctcgcgcagc cgggtctcga tgtagaagca ctcgggcgcc ttgatgtcct
     1861 cgaggttgat gccgccgaag gtcggctcca tccgcgcgat cgtctcgatc agcgcgtcgg
     1921 ggtcgttctc ggccagctcg atgtcgaaca cgtcgatgcc ggcgaacttc ttgaacaggc
     1981 accccttgcc ctccatgacc ggcttgctcg cgagcggccc gatgttgccg aggccgagca
     2041 ccgccgttcc gttcgtgatg accgcgacga gattgctgcg cgcggtcagg ttgccggcct
     2101 cgcgcggatc gtcgacgatc gccatgcagg cgtcggcgac gccgggcgaa taggcgagct
     2161 ccttgttcgt gtaggcggtc gtcagatcga cgtacgaagc c
//
LOCUS       DASVHM010000170         2238 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_84884, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000170 DASVHM010000000
VERSION     DASVHM010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84884"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..785)
                     /locus_tag="VF308_03350"
     CDS             complement(<1..785)
                     /locus_tag="VF308_03350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEX7435718.1"
                     /translation="MVCAASLAWAPALVTAQERSITMASTTSTEQSGLFAHLLPAFKQ
                     ASGIDVRVVAVGTGQALDMGRRGDADVLFVHDRQAEEKLVAEGFGIKRSDVMYNDFII
                     VGPQGDPAGAKGKDVVTALAKIAAQSAAFISRGDKSGTHAAELRYWKTAGIDAPATRF
                     AGYKECGCGMGPALNIASSTDAYALTDRGTWLSFKNRGKLTVLVEGDTRLFNQYGVIV
                     VNPARHPQVKTALAQAFADWVVSADGQAAIAAYKVGGEQLFFP"
     gene            complement(815..1540)
                     /locus_tag="VF308_03355"
     CDS             complement(815..1540)
                     /locus_tag="VF308_03355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008902816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7435719.1"
                     /translation="MTVAPASTLIALRDASVAFGAVPAVRNATMRVAAGDFIAVVGAN
                     GSGKTSLLRLLHGVVAYTGSREVLRPAGVQAMIFQRPFLLRLSVWNNVRIALWLAHRH
                     TAAALRDERAEQALRRVGLGALRHRPARSLSGGEQQRLALARGWAVRPDILFLDEPTA
                     SLDPSAKKDVEALLAGFAADGMTLVMSTHNLGQAKRLASRVIYMDEGRIDIDLPTADF
                     FGSGTLGRADLFLKGELSWPLDG"
     gene            complement(1537..>2238)
                     /locus_tag="VF308_03360"
     CDS             complement(1537..>2238)
                     /locus_tag="VF308_03360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010459810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7435720.1"
                     /translation="PESFATAFRLIVHADPVLVRTVALSLAVSGSACLCAAAFGLASG
                     AWLAVVRFAGQRAVLLALDTLLALPSVVVGLVVYLLLSRSGPLGSWGILFTPAAMVIA
                     QTILVLPIVAALARQVVADALRDGGDQLRSMGASALVRALLMLLHERWAVATLMLIAF
                     GRAIAEVGAVMIVGGNIDGVTRVMTTTIALETSKGDLPLALALGIVLLGVIALLNVAI
                     ALLRHGSGPLAVESR"
BASE COUNT          380 a          764 c          780 g          314 t
ORIGIN      
        1 ttcgggaaga agagctgctc gccgccgacc ttgtaggcgg cgattgccgc ctgcccgtcg
       61 gccgagacga cccagtccgc gaacgcctgc gccaaagccg tcttcacttg cggatggcga
      121 gccgggttga cgacgatgac gccgtactgg ttgaagagcc tggtgtcgcc ctcgaccagg
      181 acagtcagct tgccgcgatt cttgaagctc agccaggtgc cgcggtcggt gagcgcgtag
      241 gcgtccgtcg aggaggcgat gttgagcgcc gggcccatgc cgcagccgca ttccttgtag
      301 cctgcgaacc gcgtcgccgg agcatcgatt ccggccgtct tccagtagcg cagctcggcg
      361 gcgtgggtgc cgctcttgtc gccgcgcgag atgaaagcgg ccgattgcgc cgcgatcttt
      421 gcgagcgccg tgacgacgtc ttttcccttc gctcccgcgg gatcgccttg cggtccgacg
      481 atgatgaagt cgttgtacat cacatcgctt cgcttgatgc cgaagccctc ggcgacgagc
      541 ttttcctccg cctgccggtc gtgcacgaac aggacgtcgg cgtcgccgcg ccgccccatg
      601 tccagggcct gcccggtgcc gacggcgacg acgcgaacgt cgatcccgct cgcctgcttg
      661 aacgcgggca ggaggtgcgc gaacaagccc gactgttcgg tgctcgtcgt cgacgccatc
      721 gtgatgctgc gttcctgtgc cgtcacaagc gcaggcgccc atgccagcga cgcggcgcag
      781 accatcccga gcacggcgcg acgccgcgcc tgattcaccc atcgagcggc catgaaagct
      841 ctcccttgag aaagagatca gcacgaccca gcgtgccgga accgaagaaa tctgccgtcg
      901 gcagatcgat gtcgatgcgc ccctcgtcca tgtagatgac gcggctcgcg aggcgcttgg
      961 cctggccgag gttgtgggtg ctcatcacga gcgtcatgcc gtcggcggca aagccggcga
     1021 gcagggcctc cacgtccttc ttcgccgacg ggtcgaggct ggccgtgggt tcatcgagaa
     1081 acaggatgtc cggccgcact gcccagccgc gagcgagggc gagacgctgc tgctcgccgc
     1141 cggagagcga gcgcgccggc cggtggcgca aggcgccgag gccgacgcgt cgtagcgcct
     1201 gttccgcgcg ctcgtcgcgc agcgcggccg cagtgtgccg gtgggccagc cagagggcga
     1261 tgcggacgtt gttccagacc gaaagccgaa gcaggaaagg ccgctggaaa atcatcgcct
     1321 ggacgccggc gggtcggagc acctcgcgcg accccgtgta cgcgacgacc ccgtgcagca
     1381 gtcgcagcag gctggtcttg ccggaaccgt tggcgccgac gacggcgatg aagtcgcccg
     1441 ccgcgacgcg catcgtcgcg ttgcgcaccg ccggcactgc tccgaacgcg accgaggcgt
     1501 ctcgcagcgc gatcagggtc gaagccgggg ctacggtcat cgcgactcga ccgccagcgg
     1561 gccgctgccg tgccgaagga gagcgatcgc gacattgagc agcgcgatca cgccgagcag
     1621 cacgatgccg agcgcgagag cgagcggcag gtcgcccttg ctcgtctcga gggcgatcgt
     1681 ggtcgtcatc acgcgggtca cgccgtcgat gttgccgccg acgatcatca ccgcgccgac
     1741 ctcggcgatg gcacggccga aggcgatgag catcagcgtc gccaccgccc agcgctcgtg
     1801 cagcagcatc agcaatgcgc ggacgagggc gctggccccc atcgagcgca gctgatcgcc
     1861 gccgtcgcgc aaggcgtcgg cgacgacctg gcgggcgagc gcggcgacga tcggcaggac
     1921 gaggatggtc tgggcgatga ccatcgccgc cggcgtgaag agaattcccc acgacccgag
     1981 cgggccactg cgcgacagca gcaggtagac gaccaacccg accacgaccg agggcaaggc
     2041 gagcagcgtg tcgagcgcaa gcagaacggc tcgctggccg gcaaatcgca ccacggccag
     2101 ccacgcgccc gaggcgagcc cgaacgcggc tgcgcacagg cacgcgctgc cgctgaccgc
     2161 gagcgacagg gccacggtgc gaacaagcac cggatcggca tggacaatga ggcgaaatgc
     2221 ggttgcgaag ctttccgg
//
LOCUS       DASVHM010000171         3736 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1022383, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000171 DASVHM010000000
VERSION     DASVHM010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3736
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1022383"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1424)
                     /locus_tag="VF308_03365"
     CDS             complement(<1..1424)
                     /locus_tag="VF308_03365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HEX7435721.1"
                     /translation="MKPAHRLPLLIGGLAGAMVLLGAVSVAAVWATLDPAERDTVAAV
                     LASRAMLVVMLWLAGLGLSAWGLSRLFGRFVEAPARLHEQAQVLLAGGVARELDAQGS
                     AANRGLAETLNALVQQRTQLRQDVAQQVVEASRGIEEERSRLSALMAELTQSVVVCNL
                     DGRILLYNSRARAQFRAWSSTPETAGGAELIGLGRSIYAVFERQLVAHALESIRQRAR
                     AGASTPSAQFVTSTPGGQLLRVQMAPVRHPSTPGDGAPAAEFSGFVLMLDDITRDFEQ
                     EALRDRLLLGLTEGSRASLGNLQAAVEMLELPDLEAPMRERFQRVVRDEVGAMTARLQ
                     TLAADVLAGMKTRWPMEDMLGADLVSAGLRRIEALGPVQVSADHVDATLWLKVDSYSL
                     LQALAYLAGRLVDEYEVRTLQLRLQAAGPRAQLDLVWVGPGMSTETVMNWQMDAMHSG
                     DYATPLTVRDVVERHGGEFWFERER"
     gene            complement(1421..1795)
                     /locus_tag="VF308_03370"
     CDS             complement(1421..1795)
                     /locus_tag="VF308_03370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7435722.1"
                     /translation="MTRSILIADDEPNILISLEYLMKREGYAVSVARDGEEAIAVILR
                     DRPALVLLDVMMPKKSGFEVCQEVRANDAVKDTLILMLTAKGRDTDVAKGLGLGADAY
                     MTKPFSTKELVRKVREMLESGT"
     gene            complement(1792..>3736)
                     /locus_tag="VF308_03375"
     CDS             complement(1792..>3736)
                     /locus_tag="VF308_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008907341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX7435723.1"
                     /translation="QMMVVENVAEQHLRRAAWVFPLYLLLINLFVLPIALGGLLHFGP
                     GKMDADTFVLSLPLAVQKHGLALLVFVGGLSAATGMVIVEAIAVSTMVCNDLVMPMLL
                     RTRRFGARAGGDLSRLLLSIRRAAIVLVLLLGYAYFAIAGEAYALVSIGLISFAAVAQ
                     FAPAMLAGLYWKGGTRSGALAGLLLGFALWAYTLMLPSVAKSGWLAAGFLHDGPWGIA
                     LLKPEQLFGLSGLDNLTHALFWSLLANVVAFVALSLWRPPSAREASQALLFVDVFHAT
                     AARGAAGPVFWRGRAQVRELLPLASRFLGAPRANQLFGEFARQRGVATIEQIPADAQL
                     VQFVETQLAGAIGSASARVMVAAVVEEEALGLDDVMRILDEASQLRAYSHQLEDKSRS
                     LEQATADLRAANEQLKSLDRLKDDFMSSVTHELRTPLTSIRALSEMMADDLAMPQAQR
                     QEFLRIINAETERLSRLVNQVLDMAKIEAGHAQWHTSDVDLRRLLAQAVQTTAEMFRE
                     RGATVNLDMPDAVPTLRADADRLMQVVLNLLSNAVKFLPQSGGRVDVRLRAHEAGLRV
                     EIQDNGSGVAVEQQALIFEKFRQGGDAAQRPKGTGLGLPISRQIVEHFGGRMWLQAVP
                     GPGACFAFELPWQAPTDSPGDPS"
BASE COUNT          589 a         1322 c         1285 g          540 t
ORIGIN      
        1 cgctcgcgct cgaaccagaa ttcgccgccg tggcgctcga ccacgtcgcg gaccgtcagc
       61 ggcgtggcgt agtcgccgct gtgcatcgcg tccatctgcc agttcatcac ggtctcggtg
      121 ctcatccccg ggccgaccca gaccaagtcg agctgggccc gcgggccggc cgcctgcagg
      181 cgcagctgca acgtgcgcac ctcgtactcg tcgaccagcc ggccagccag gtaagccagc
      241 gcctgcaaca gcgaatagct gtcgaccttg agccacagcg tcgcatcgac gtggtcggcg
      301 ctcacctgca ccgggccgag cgcctcgatg cggcgcaggc ccgcggagac gagatcggcg
      361 ccgagcatgt cttccatcgg ccagcgcgtc ttcatgccgg ccagcacatc ggcggccagg
      421 gtctgcagcc gcgcggtcat cgccccgacc tcgtcgcgca cgacacgctg gaagcgctcg
      481 cgcatcggcg cctccagatc gggcagctcg agcatttcga ccgccgcctg caggttgccg
      541 agcgaggcgc ggctgccttc ggtcagaccg agcagcaggc ggtcgcgcag cgcctcctgt
      601 tcgaagtcgc gggtgatgtc gtcgagcatg agcacgaagc cgctgaattc ggcggccggc
      661 gcgccatcgc ctggcgtgga cggatggcgc accggagcca tctgtacgcg cagcagctgg
      721 ccgccgggag tgctggtgac gaactgcgcc gaaggcgtcg aggcgccggc ccgggcgcgt
      781 tgccggatgc tctcgagcgc gtgcgccacg agctggcgtt cgaacacggc gtagatcgag
      841 cggcccaggc cgatcagttc ggcgccgccg gcggtctcgg gcgtgctcga ccaggccctg
      901 aactgggccc gggcgcggct gttgtacagg aggatgcggc cgtcgaggtt gcagaccacc
      961 acgctttgcg tcagctcggc catcagcgcc gagagccggc tgcgctcctc ctcgatgccg
     1021 cggctggctt ccacgacctg ctgcgcgaca tcctggcgca actgggtgcg ctgctgcacc
     1081 agtgcattga gggtctcggc aaggccgcgg ttggcggcac tgccttgcgc gtcgagttcg
     1141 cgcgccacgc caccggccag cagcacctgg gcctgctcgt gcaggcgggc cggggcctcg
     1201 acgaaacggc cgaacaggcg gctcagtccc caggcggaga gaccgagccc ggccagccag
     1261 agcatcacga ccagcatggc ccgcgaagcc aggacggctg ccaccgtgtc gcgctccgca
     1321 gggtcgagcg tggcccagac cgccgccacg ctgacggcgc ccagcagcac catcgccccg
     1381 gccaggccac cgatcaggag cggcagccga tgggccggtt tcaagtcccg ctctccagca
     1441 tctcgcgcac cttgcgcacc agttccttgg tcgagaacgg cttcgtcatg taggcgtcgg
     1501 cgcccaggcc caggcccttg gcgacatcgg tgtcgcggcc cttcgcggtc agcatcagga
     1561 tcagcgtgtc cttgacggcg tcgttcgcgc gcacctcctg gcagacctcg aagcccgact
     1621 tcttcggcat catcacgtcg agcagcacga gcgccggccg atcgcgcagg atcacggcga
     1681 tcgcctcctc gccgtcgcgc gccacgctga cggcgtagcc ctcgcgtttc atcaggtact
     1741 cgagcgagat caggatgttc ggttcgtcat cggcgatcag gatgctgcgg gtcacgatgg
     1801 gtctcctggc gagtcggtcg gtgcctgcca cggcaattcg aacgcaaagc aggcgccggg
     1861 gccgggcacc gcctgcagcc acatccggcc gccgaagtgc tcgacgatct ggcggctgat
     1921 cggcaggccc aggccggttc ctttcggccg ttgcgcggcg tcgccgccct ggcggaactt
     1981 ctcgaagatc agcgcctgct gctcgacagc gacgccgctg ccgttgtcct ggatctcgac
     2041 ccgcaggccg gcctcgtgcg cgcgcagccg cacgtcgacc cgcccgccgc tttgcggcag
     2101 gaacttgacg gcattcgaca gcaggttcag caccacctgc atcagccggt cggcatcggc
     2161 gcgcagcgtc ggcacggcat cgggcatatc gaggttgacc gtcgcaccgc gctcgcggaa
     2221 catctcggcg gtggtctgca ccgcctgggc tagcagcctg cgcaggtcga cgtcgctggt
     2281 gtgccattgg gcgtggccgg cctcgatctt ggccatgtcc aggacctggt tgacgaggcg
     2341 gctgaggcgc tcggtctcgg cgttgatgat gcgcagaaat tcctggcgct gcgcctgcgg
     2401 catggcgagg tcgtcggcca tcatttccga gagcgcgcgg atcgaggtca gcggcgtgcg
     2461 cagctcgtgc gtcaccgagg acatgaaatc gtccttcagc cggtccaggc tcttgagctg
     2521 ttcgttggcc gcgcgcaggt cggccgtcgc ctgctcgagc gagcgcgact tgtcctcgag
     2581 ctgatgcgaa taggcccgca gttgcgaggc ctcgtcgagg atgcgcatca cgtcgtccag
     2641 cccgagcgcc tcttcctcga ccacggccgc caccatgacg cgcgccgatg cgctgccgat
     2701 ggcgccggcc agctgggttt cgacgaactg gacgagttgg gcatcggccg ggatctgctc
     2761 gatcgtcgca accccgcgct ggcgcgcgaa ttcgccgaac agctggttgg cgcgaggcgc
     2821 gccgaggaag cggctcgcca gcggcagcag ctcgcgaacc tgggcccgcc cgcgccagaa
     2881 caccgggccg gccgcgccgc gcgccgcggt ggcgtgaaac acgtcgacga agagcagcgc
     2941 ctggcttgct tcgcgcgccg acggcggccg ccacaacgac agcgcgacga acgcaacgac
     3001 gttggccagc aggctccaga acagggcatg ggtcaggttg tcgagcccgc tcaggccgaa
     3061 caactgctcg ggcttgagca gcgcgatgcc ccacggcccg tcgtgcagga agccggccgc
     3121 gagccacccc gacttcgcga cagacggcag catcagcgtg taggcccaca gcgcgaagcc
     3181 gagcagcagg ccggccagcg cgccgctgcg cgtgccgcct ttccagtaga ggccggccag
     3241 catcgccggc gcgaactgcg ccaccgcggc aaaactgatc agcccgatgc tgaccagcgc
     3301 ataggcctcg ccggcaatgg cgaagtaggc gtaacccaac agcaggacga ggacgatcgc
     3361 ggcgcgccgg atgctcagca ggagccggct caggtcgccg ccggcgcgcg cgccgaagcg
     3421 acgcgtgcgc agcagcatcg gcatgaccag gtcgttgcag accatggtcg acacggcgat
     3481 ggcttcgacg atcaccatgc ctgtggccgc ggacagcccg ccgacgaaca cgagcagggc
     3541 gagaccatgc ttttgcacgg ccagcggcag cgagagcacg aaggtatcgg cgtccatctt
     3601 gccgggtccg aaatggagca ggccgccgag cgcgatcggc agcacgaaca gattgatcag
     3661 cagcaggtag agcgggaaca cccaggcggc cctgcgcagg tgctgctcgg ccacgttttc
     3721 gaccaccatc atctgg
//
LOCUS       DASVHM010000172         5592 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_156253, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000172 DASVHM010000000
VERSION     DASVHM010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5592
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156253"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..994)
                     /locus_tag="VF308_03380"
     CDS             complement(155..994)
                     /locus_tag="VF308_03380"
                     /inference="COORDINATES: protein motif:HMM:NF016668.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChbG/HpnK family deacetylase"
                     /protein_id="HEX7435724.1"
                     /translation="MRRRLALCADDFGSAPGISEAIVELVEAGRLNAVSCLANARHWS
                     EGAPLLRGLAARVDIGLHFNLTEGRPLSPDLARLWPRLPALPRLIALAHLGALPREAL
                     GVEFEAQLEAFAGATGAVPSFADGHQHVHHLPGVRRIVLDAVERLRPMPGVRNTGHVL
                     GPGFGLKRALIEATGGRCLLAQLVRRGIAHNAALTGVYDFAEPDYRALMLRWLAQVPG
                     EGALLFCHPGGAPGAIDDPIGAARERERAYLCSDGFGADLHAAGVALGRVWRVAARTR
                     ADG"
     gene            complement(991..1965)
                     /locus_tag="VF308_03385"
     CDS             complement(991..1965)
                     /locus_tag="VF308_03385"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006392883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX7435725.1"
                     /translation="MTDTPRSTRPSISCVVPAFNEAENLGALLTALLPQLAELTDSWE
                     VIVVDDGSRDRTPAAIAPWLVRPGVRYVRLSRNFGKEAALTAGIDRAAGEVVLLMDAD
                     LQHPATLVPEMIAAWAKGADMVCAARASRADESWVKRLGTWLFYRLVNANSQVPIPVD
                     AGDFRLMDRKVVEALKSLPERNRFMKGLYAWVGFRNEIIPYVPNERHSGTSSFSMRRL
                     SHLAFTGVTAFTNAPLRLWSGVGVVIALCAIAFGIWIVIDHYIEGHDVPGWATLVTGM
                     AFFSGVQLLSIGILGEYVGRIFEEVKQRPVYVVGSEVGRGAIRTPQVE"
     gene            2066..2347
                     /locus_tag="VF308_03390"
     CDS             2066..2347
                     /locus_tag="VF308_03390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435726.1"
                     /translation="MTWTCGKWWWLAWLLAATGARADAAPSMHAVQVSAHAWTVQGAS
                     ALGSRENDNFISNAGFIVTPAAWSSSTRSARRLWRDACSPRSRASPRSR"
     gene            2263..2985
                     /locus_tag="VF308_03395"
     CDS             2263..2985
                     /locus_tag="VF308_03395"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7435727.1"
                     /translation="MVVVDALGSPALARRLLAEIARVTAQPVTHVVVTHYHADHIYGL
                     QVFKAAGATIVAERHGREYLGSETARLRLQSSIDEGLTEAGTRLAPADTWLDGSASLE
                     VGGVRLELLHVGPAHTAEDLALFVPSEGVLFAGDLVFRGRVPFVGQADSRRWIESLDH
                     LLQLPASVIVPGHGPHSTETKADLQLTRDYLVYLRATMGAAAKAMAPFDEGPMQERTG
                     HASRRCRSSRRQTESMPTTPTC"
     gene            complement(3013..4698)
                     /locus_tag="VF308_03400"
     CDS             complement(3013..4698)
                     /locus_tag="VF308_03400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009517847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7435728.1"
                     /translation="MTATSTARSEDLALQRLYHWEKTAPAQVILTQPTGGGAVRDYTW
                     AQVMDETRRMAAHLKGLGFAPASRIAILSKNTAHWLMCDFAIWMAGHVSVPLYPTLAA
                     GTIRQILEHSEAKLLFVGKLDGWDAMAPGVPAGLPCIGLPLASANAFASWEALVKATP
                     PLAESPLRAADELGTIMYTSGTTGMPKGVMHSFGTFAWSMQAALKRVPLRADARILSY
                     LPLAHVAERTLVEHALLATGMRVFFAESLETFTADLRRARPTVFFSVPRLWVKFQQAV
                     SAKMPPAKLARMLKIPIVSGLVRRKILDTLGLDQCQFAAGGAAPMPPELLAWYASLGL
                     PIIEVYGMTENCGVSHATLPGVQRPGTVGRTYDGVESRIDPESGEIQVKSPGVMLGYY
                     KEPELTRQAFSADGWLRTGDKGQLDAEGNLRITGRVKDLFKTSKGKYVAPAPIEDRLV
                     MNGALEACVVTGANLGQPLGIVMLNAEAAQRANAAPDRAGLETMLAAHLVSINASLDP
                     HEQLECLVVVTTPWSVENGFITPTFKVKRNRIEEVYGPMYERWVGAKRPVVWA"
     gene            complement(4813..5445)
                     /gene="soxX"
                     /locus_tag="VF308_03405"
     CDS             complement(4813..5445)
                     /gene="soxX"
                     /locus_tag="VF308_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur oxidation c-type cytochrome SoxX"
                     /protein_id="HEX7435729.1"
                     /translation="MKAFKGAVIAAVALGACASTPNPAALDQMAQAMIQASFREQGIA
                     RLDRLNQDAVQQACSAPEPPSPAVARQLEAAAQATIRWPADGIYLGDWREGEKLAQNG
                     RGMTWTDGAGVPGGGNCYNCHQLTKAEISFGTIGPSLYQYGKLRGVTNPLDPASAPVV
                     QYAWGKLWNSKASNVCSTMPRFGHSGVLSQAQIRDLMALLLDPASPVNAP"
BASE COUNT          856 a         1910 c         1970 g          856 t
ORIGIN      
        1 gcgctgttcg gcgcactcct cggcatggcg gtggtcgcgg ccggggtccg gctcggtctc
       61 cactatctgc tggcgcaggt gctcgcgact ggcgcgagcc tggtgctgac cttcgccatc
      121 aaccgggcct ggtcgtttcg ctgaggcgcg cgcatcagcc gtccgcacgg gtgcgggcgg
      181 cgacgcgcca gactctgccg agcgcgacgc cggcggcatg caggtcggca ccgaagccgt
      241 cgctgcacag gtacgcgcgc tcgcgctcgc gcgccgcgcc aatcggatcg tcgatggcgc
      301 ccggcgcgcc gcccgggtgg cagaacagca gggcgccctc gcccggcact tgggcgagcc
      361 agcgcagcat cagagcccgg tagtcgggct cggcgaaatc gtagacgccg gtcagggccg
      421 cgttgtgggc gatgccgcgc cgcaccagtt gcgccagcag gcagcgcccg cccgtggcct
      481 cgatcagcgc gcgcttgaga ccgaaacccg ggccgagcac atggcccgtg ttgcgcaccc
      541 ccggcatcgg ccgcaggcgc tcgaccgcgt cgaggacgat ccggcgcacg ccgggcaggt
      601 ggtgcacatg ctggtggccg tcggcgaagc tcggcacggc cccggtcgca cccgcgaagg
      661 cctcgagctg agcctcgaat tcgaccccca gcgcctcgcg cggcagcgcg cccaaatggg
      721 ccagcgcgat caggcgcggc aaggccggca ggcgcggcca gagccgcgcg agatcgggac
      781 tgagcggccg gccttcggtc aggttgaagt gcagcccgat gtcgacgcgg gctgcgaggc
      841 cgcgcagcaa gggcgcaccc tccgaccagt ggcgggcgtt cgcgaggcac gacacggcat
      901 tgagccgccc cgcttcgacg agctcgacga tcgcctcgga aatgcccggc gcgctgccga
      961 aatcgtcggc gcagagcgcg agccgacgcc tcattcgacc tgcggcgtcc ggatcgcgcc
     1021 gcggccaacc tcgctgccga ccacgtagac aggccgctgc ttgacctctt cgaagatccg
     1081 gcccacatac tcgccgagga tgccgatcga gagcagctgc acgccgctga agaaggccat
     1141 accggtcacg agcgtcgccc agccgggcac gtcatggccc tcgatgtagt gatcgatcac
     1201 gatccagatg ccgaaggcga tcgcgcacag cgcgatcacc acgccgaccc cgctccagag
     1261 tcgcagcggc gcattggtga aggcggtgac gccggtgaag gcaaggtgcg agaggcggcg
     1321 catcgagaag ctgctcgtgc cggaatggcg ctcgttcggc acgtagggaa tgatctcgtt
     1381 gcgaaagccc acccaggcgt agaggccctt catgaagcgg ttgcgctcgg gcagcgactt
     1441 cagcgcctcg acgaccttgc ggtccatcag gcgaaagtcg ccggcgtcga ccgggatcgg
     1501 aacctgcgaa ttggcgttga cgaggcggta gaaaagccag gtgccgaggc gcttgaccca
     1561 cgactcgtcg gcccgcgagg cgcgcgccgc gcacaccatg tcggcgccct tggcccaggc
     1621 cgcgatcatt tcgggcacca gcgtcgcggg gtgctgcaaa tccgcgtcca tcaagagcac
     1681 cacctcgccg gcggcgcggt cgatgcccgc cgtgagcgcg gcctccttgc cgaagttgcg
     1741 cgagagacga acgtagcgca cgccgggccg cacgagccag ggcgcgatcg cggcgggcgt
     1801 ccggtcgcgg ctgccgtcgt cgacgacgat gacctcccac gagtcggtca attccgcgag
     1861 ctgcggaagc agggcggtga ggagcgcgcc gaggttttcg gcttcgttga acgccggcac
     1921 cacgcagctg atcgagggcc gggtcgagcg aggggtgtcg gtcatgcgga tcgcgctttc
     1981 aggacgcgac tttacgccgc gccttcccgg ccgccgtgga gtcgagcggg cacgctcgtc
     2041 tataaccgcg gcagggagat ccggcatgac gtggacgtgc ggcaagtggt ggtggctggc
     2101 gtggctgctc gcggcaacgg gggcgcgcgc cgacgcggcg ccgtcgatgc acgcggtcca
     2161 ggtctcggcg catgcctgga ccgtgcaggg cgcctcggcg ctggggtcgc gcgagaacga
     2221 caacttcatc tcgaacgcgg gcttcatcgt cacgccggcc gcgtggtcgt cgtcgacgcg
     2281 ctcggctcgc cggctctggc gcgacgcctg ctcgccgaga tcgcgcgcgt caccgcgcag
     2341 ccggtgacgc acgtcgtcgt cacccactat cacgccgacc atatctacgg cttgcaggtc
     2401 ttcaaggcgg caggcgcgac gatcgtcgcc gagcgccacg gccgcgaata cctcggcagc
     2461 gagaccgcgc ggctgcgcct gcaatcgagc atcgacgaag gcttgaccga agccggcacg
     2521 cgcctggcgc cggccgacac ctggctcgac ggcagcgcct cgctggaagt cggcggcgtg
     2581 cgcctcgagc tcctccacgt cggccccgcg cacaccgccg aagacctcgc gctgttcgtg
     2641 ccgtccgagg gcgtgctgtt cgcgggagac ctcgtctttc gcggtcgcgt tccattcgtc
     2701 ggccaggccg acagccggcg ctggatcgaa tcgctcgacc acctccttca gctgccggcc
     2761 tcggtgatcg tgcccggtca cgggccgcat tcgaccgaga ccaaagccga cctgcagctc
     2821 acgcgcgact acctcgtcta tctgcgcgcg acgatgggtg cggccgcgaa ggcgatggcg
     2881 ccgttcgacg aggggcctat gcaggaacgg actggtcacg cttcgaggcg ttgccgctct
     2941 tcaaggcgac aaaccgaatc aatgcctaca acacctacct gctgatggag caggaaaaag
     3001 actaggccgc gctcaagccc acacgaccgg tcgcttcgcg ccgacccagc gttcgtacat
     3061 cgggccgtag acttcctcga tgcgattgcg cttgaccttg aaggtcggcg tgatgaaacc
     3121 gttctccacc gaccacggcg tcgtcacgac gacgaggcat tcgagctgct cgtgcgggtc
     3181 gaggctcgcg ttgatcgata cgagatgggc ggcgagcatg gtttcgaggc cggcgcgatc
     3241 cggcgccgca ttcgcccgct gcgccgcctc ggcgttgagc atcacgatgc cgagcggctg
     3301 accgaggttg gcgccggtca cgacgcaggc ttcgagcgcg ccgttcatca ccaggcggtc
     3361 ttcgatcggc gcgggcgcca cgtacttgcc cttgctggtc ttgaacaggt ccttcacgcg
     3421 accagtgatg cgcaggttgc cctcggcgtc gagttggccc ttgtcgccgg tgcgcagcca
     3481 gccatcggcg ctgaaggcct ggcgcgtcag ctcgggttcc ttgtaatagc caagcatcac
     3541 gcccgggctc ttcacctgga tctcgccgct ctccgggtcg atgcgcgact cgacgccgtc
     3601 gtaagtccgg ccgacggtgc ctgggcgctg cacgccgggc agcgtcgcgt gcgagacgcc
     3661 gcagttctcg gtcatgccgt agacctcgat gatgggcagg ccgaggctcg cgtaccaggc
     3721 gagcagctcg ggcggcatgg gcgccgcgcc gccggccgcg aactggcact ggtcgaggcc
     3781 gagcgtgtcg aggatcttgc gccgcaccag accgctgacg atcgggatct tcagcatccg
     3841 ggcgagcttg gccggcggca tcttcgcgct cacggcctgc tggaacttga cccagaggcg
     3901 cggcaccgag aagaacaccg tcggccgcgc gcgccgcagg tcggcggtga aggtctcgag
     3961 gctttcggcg aagaagacgc gcatgcccgt ggcgagcagc gcatgctcga ccagagtgcg
     4021 ctcggccacg tgggcaagcg gcaggtagct gaggatgcgc gcgtcggctc tgaggggcac
     4081 gcgcttgagc gcggcctgca tcgaccaggc gaaggttccg aagctgtgca tcacgccctt
     4141 gggcatgccc gtggtgccgg aggtgtacat gatcgtgccc agctcgtcgg ccgcgcgcag
     4201 cgggctttcg gcgagtggcg gcgtcgcctt gacgagagcc tcccaggagg caaaggcatt
     4261 cgccgacgcg agcggcaggc cgatgcaggg cagcccggcc ggcacgccgg gcgccattgc
     4321 gtcccagccg tcgagcttgc cgacgaagag aagcttcgct tccgaatgct cgaggatctg
     4381 gcggatcgtg ccagcggcga gcgtcggata gagcggcacc gacacatggc cggccatcca
     4441 gatcgcgaaa tcgcacatca gccaatgggc cgtgttcttc gagaggatcg cgatgcggct
     4501 ggccggggcg aagccgagac ccttcagatg cgccgccatg cgccgggttt cgtccatcac
     4561 ctgggcccag gtgtagtcgc gcaccgcgcc gccgccggtc ggctgggtca agatcacctg
     4621 cgccggggcc gtcttctccc agtggtaaag gcgctgcagg gcgaggtctt cggatcgggc
     4681 ggtgcttgtg gccgtcatgg ggaactcctc caaagcgcca ggccggcggc ccgcgcggag
     4741 cgccacggta ttgcatcgag gcgcggccgc caagagtggc aacccttcgc gacggcggcg
     4801 gtgtttgccg tcctatggag cgttgaccgg cgaggccggg tcgagcagca acgccatcag
     4861 atcgcggatc tgggcctgcg acagcacccc cgaatgaccg aaacgcggca tcgtcgagca
     4921 cacattggac gccttgctgt tccagagctt gccccacgcg tactggacga cgggcgccga
     4981 cgcgggatcg agcgggttcg tcacgccgcg cagctttccg tactgataga ggctcgggcc
     5041 gatggtgccg aacgagatct cggccttcgt caactggtgg cagttgtagc agttgccgcc
     5101 gcccggcacg ccggcgccat cggtccaggt catgccgcga ccgttctgtg ccagcttctc
     5161 gccttcgcgc cagtcgccga gatagatgcc gtccgcgggc cagcggatcg tcgcctgcgc
     5221 ggccgcttcg agctgcctgg ccacggccgg gctcggcggc tcgggggccg agcaggcctg
     5281 ctgcaccgcg tcctggttca ggcggtcgag cctggcgatg ccctgctcgc gaaacgacgc
     5341 ttggatcatc gcctgcgcca tctgatcgag ggcggccggg ttcggcgtgc tcgcacaggc
     5401 gccgagcgcc acggccgcga tgacagctcc tttgaacgcc ttcatcgtgg ccttatatgg
     5461 acgcctcccg tgtggcaagc gagttcttga agttctgact tggcggtaat gactgcggtc
     5521 ttatatccgg ccttcatgtg cagtccgggc aagcccgctg ctggccttga tggtcattcg
     5581 cgaggtcggt gc
//
LOCUS       DASVHM010000173         8250 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_951145, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000173 DASVHM010000000
VERSION     DASVHM010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 8250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8250
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_951145"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..184)
                     /locus_tag="VF308_03410"
     CDS             complement(<1..184)
                     /locus_tag="VF308_03410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435730.1"
                     /translation="MNPAPSSRSFSAPERGADGRRWCRWASLVVVGATLIAGGAGAAE
                     PAIETATQVRATLARLE"
     gene            complement(268..855)
                     /locus_tag="VF308_03415"
     CDS             complement(268..855)
                     /locus_tag="VF308_03415"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEX7435731.1"
                     /translation="MLPLPPVTQALLLANVAIFFLSELLGPGLLSAFALWPIGAGFWP
                     WQVGTYAFLHGSFNHLFFNMLGLWMFGGELEHVWGQKRFLQFYAASVVAAALTQLLVN
                     FLLGSASPTIGASGGLFGLLLAFAMIFPNRIILLFFVIPMKAKYLVALYGILELYQGV
                     YVNNSGVAHFAHLGGMLGGLITLRYWRGQAPFGRR"
     gene            990..1074
                     /locus_tag="VF308_03420"
     tRNA            990..1074
                     /locus_tag="VF308_03420"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1024..1026,aa:Leu,seq:caa)
     gene            1078..2013
                     /gene="cysM"
                     /locus_tag="VF308_03425"
     CDS             1078..2013
                     /gene="cysM"
                     /locus_tag="VF308_03425"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase CysM"
                     /protein_id="HEX7435732.1"
                     /translation="MPPTFLMSDSTPTYPTIEDVIGATPMVRLVRLPGSDNALRGNVI
                     LGKLEGNNPAGSVKDRPAISMIRRAEERGDIKPGDTLIEATSGNTGIALAMAAAIRGY
                     RMLLVMPEDLSVERAQTMKAFGAELILTPRSGGMEYARDLATQMEKDGKGRVLDQFAN
                     ADNPRIHYETTGPEIWKDTGGRITHFVSAMGTTGTITGVSRFLKEKNPAIRIIGAQPS
                     EGSRIPGIRKWPQEYLPKIYDPKAVDELVLVSQVDAEEVTRRLASEEGIFAGISAAGA
                     CWVALQIAAQVENATIVFVVCDRGDRYLSTGVFPA"
     gene            2010..2579
                     /locus_tag="VF308_03430"
     CDS             2010..2579
                     /locus_tag="VF308_03430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011795114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX7435733.1"
                     /translation="MNAPHQTRFCVNCATALAPISIEEDGGTKTRLRCPACGWTHWNN
                     PTPVLAAVIELVDRDGQVLLARNAAWPGKFYGLITGFMEAGETPEEGIAREVAEETSL
                     TVESLSLIGVYEFLRMNQVIIAYHAAARGEIVLSAELVAYRLFPPAEVNCWPAGTGRA
                     LADWLRTRGIEPRWMDLPPGKRATEVDVD"
     gene            2590..2817
                     /locus_tag="VF308_03435"
     CDS             2590..2817
                     /locus_tag="VF308_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005795629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEX7435734.1"
                     /translation="MEAQKEIDTRGMNCPLPILKAKKALADMSSGDVLKVVATDPGSV
                     RDFQAFARQTGNELLEQTSANDEFVHFLRRR"
     gene            complement(2836..3702)
                     /gene="galU"
                     /locus_tag="VF308_03440"
     CDS             complement(2836..3702)
                     /gene="galU"
                     /locus_tag="VF308_03440"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013519639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEX7435735.1"
                     /translation="MTLRHAIFPVAGLGTRFLPATKALPKEMLPVVDKPLVQYAVEEA
                     YAAGVREMIFVTSRHKRAIEDHFDRTFELEDALERSHKAELLAIVRAVKPDDMECVFV
                     RQAQALGLGHAVLCGRHLVGDNPFAVLLPDDLMIGSPPVLAQMAEQFAERQASIVAVQ
                     EVPAEHTRRYGIVGGRAVGERLVDIERIVEKPAPDVAPSRLGVAGRYVLTPRVFDEIA
                     AQPRGVGGEIQLTDGIAGLLRHEKVFAYRYQGRRYDCGSKEGFLQANVELALEHPELG
                     AEFRSYLRGLTL"
     gene            3792..4769
                     /locus_tag="VF308_03445"
     CDS             3792..4769
                     /locus_tag="VF308_03445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7435736.1"
                     /translation="MDLLVIDPIDAEVMRWLASRHRLRFAPELAFAPRELRRALYNVR
                     AAIVPSSVSIDAETLDFAPVLRAVGRVSAGSENIDLEACERRHVEVVRSLTASARAEA
                     EFVIGAMLSMLRRVPVRGPDGSVAGRELGGATIGLVGMPPSARTIAQLLAAFGVRILG
                     YDPALHASDPSWADWHVSHAGLREIVERADVLCVQLDYFSRYHGLLGDRFLRHCKPNQ
                     VVVSTAHSRLFDEVALATALKSGRIAAAWLDSVEPGALDPHRPLHGIETLQVTPRVAS
                     TTRESRQRSAWAVARRIDELLEAPAATPADFKSTIPGALADLEADSLSP"
     gene            complement(4711..7611)
                     /locus_tag="VF308_03450"
     CDS             complement(4711..7611)
                     /locus_tag="VF308_03450"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014722879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEX7435737.1"
                     /translation="MTPPHDTLATTELAKSFDPAAIEAHWGPLWEESGVYEPTLDPAK
                     PSFAIQLPPPNVTGTLHMGHAFQHTIMDALVRHHRMRGDNTLWVPGTDHAGIATQIVV
                     ERQLQDAGLSRHDLGRKKFIDQVWDWKETSGSTITRQMRRMGDSVAWKYEYFTMDERL
                     SAVVTDTFVSLYDEGLIYRGKRLVNWDPVLLSAVSDLEVENEERDGTMWHILYPFSDG
                     PQPDANGQPMKGMHIATTRPETMLADGALAVHPDDERYRHLIGKLVDLPLCDRKIPII
                     ADDFVDREFGSGCVKITGAHDFNDYACALRHGIPLITIFTLDAKINENGPLAYQGLDR
                     YDARKAVLRDLETQGFLEKAVPHKHAVPVCVRTGQVVEPMLTDQWFVATTKPGRDGTS
                     IAAKAIEAVETGAVKFYPAQWINTYNQWMKNIQDWTISRQLWWGHQIPAWYGDGGEIF
                     VARSEDEARAKAEAAGYGGTLVRDPDVLDTWYSSALVPFSSLGWPKETKELELFLPSS
                     VLVTGHDIIFFWVARMIMMTLHFTGKAPFRDVYIHGLVRDPQGKRMSKSEGNVLDPVD
                     LIDGIALEPLLEKRSTGLRRPETAPRIRELTAAEFPNGIPGFGADALRFTFCSLASLG
                     RNVNFDSKRCEGYRNFCNKLWNATRFVLMNCEGKDCGLAEHTKAECAPGQPFHNYLSF
                     SPADRWITGELQRVEAVVAQGFAEYRLDAVAQAIYSFVWDEYCDWYLEIAKVQLQSSS
                     EPAQRATRRTLLRVLETVLRLMHPITPFITAELWERVAVVAGRKVDGSEHGIVRAPYP
                     KAQLERVDAKADAWVERLKAIVGSCRNLRSEMSLQPGERVPLNAIGDADFMREATPLL
                     KSLARLSEVTLFADDAGFADASSDSPVAVVGATRLALHVKIDRAAETARLTKEIDRLD
                     GEIAKATGRLANESFVGRAPAAVVDQEKKRLADFTATANRLRDQRARLESST"
     gene            complement(7625..>8250)
                     /locus_tag="VF308_03455"
     CDS             complement(7625..>8250)
                     /locus_tag="VF308_03455"
                     /inference="COORDINATES: protein motif:HMM:NF025702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4397 domain-containing protein"
                     /protein_id="HEX7435738.1"
                     /translation="LLHGLVLDQQGAATTAANGLARVRVAASVVPAGPVDVSVNGTAV
                     AAGLTSPAVGPYQLVAAGPLTVQVNGTTVTPAAPLSAGAGADVTLLVTGTGSTVTQIN
                     DDTSLSSNAARPVKLRLVNALNGAVGTATLTVDNALVGSGAAFGAASAYAPVAASAGL
                     ARVEARSGAVQYFLATNVTLASGHVYSLFLLGDAAAAPNAGQLVADR"
BASE COUNT         1292 a         2780 c         2918 g         1260 t
ORIGIN      
        1 cctcgaggcg ggcgagcgtg gcgcgcacct gcgtcgccgt ctcgatcgcc ggctcggccg
       61 cgcctgcgcc gcctgcgatc agcgtggcgc cgacgaccac cagcgacgcc caacggcacc
      121 agcgacggcc atcggcgccg cgttcgggag cggaaaaaga ccgagacgat ggcgccgggt
      181 tcatgctgcc tccgcgtgct gttcgtgcag catgagcgct tgcaagaggc gtgcgcgcgg
      241 cagggacatt ttcccgacgc gcgggcgtca gcggcggccg aacggcgcct ggccgcgcca
      301 gtagcgcagg gtgatcaggc caccgagcat gccacccagg tgggcgaagt gggcaacgcc
      361 ggaattgttc acgtagacgc cctggtagag ctcgaggatg ccgtacaggg cgaccaggta
      421 cttggccttc atcgggatga cgaagaagag caggatgatc cggttcggaa agatcatcgc
      481 gaacgccagc agcaggccga acaggccgcc cgaggcgccg atcgtgggcg aagcggagcc
      541 gagcaggaag ttgacgagga gctgtgtcag cgcggccgcg acgacgctcg ctgcatagaa
      601 ctggaggaag cgcttctggc cccagacgtg ctcgagctcg ccgccgaaca tccacaggcc
      661 cagcatgttg aagaacaggt gattgaagct gccgtgcagg aaggcgtacg tgccgacctg
      721 ccacggccag aagccggcgc cgatcggcca gagcgcaaac gcgctcagca acccgggccc
      781 gagcagctcg ctcagaaaga agatggcgac gttcgcgagc aggagtgcct gcgtgacggg
      841 aggaagcggc agcatgcagg acggtcctgg cgatggcgat tggcagctag tctagggcct
      901 gctcaggctg cgagagggct cgcgatccct ctcgcaacct gagcaggccc tggcccgtat
      961 ggcaaactgc ccgcctgctg cacgcaccgg cctcggtggc gaaattggta gacgcgcggg
     1021 actcaaaatc ccgttccgcg aggagtgtcg gttcgattcc gacccgaggc accaggcatg
     1081 ccgcccacct tcctcatgag cgactccacg ccgacctatc cgacgatcga ggacgtgatc
     1141 ggcgcgacgc cgatggtccg cctggtgcgc ctgcccggca gcgacaacgc cctgcgcggc
     1201 aacgtcatcc tcggcaagct cgagggcaac aacccggccg gctcggtcaa ggaccggccg
     1261 gcgatcagca tgatccggcg cgccgaggag cgcggcgaca tcaagccggg cgacaccctg
     1321 atcgaggcga cctcggggaa caccggcatc gccctggcga tggcggcggc gatccgcggc
     1381 taccgcatgc tgttggtgat gcccgaagac ctgagcgtcg agcgggcgca gacgatgaag
     1441 gcgttcggcg ccgagctcat tctgacgccg cgctcgggcg ggatggaata cgcgcgcgac
     1501 ctcgcgacgc agatggaaaa ggacggcaag ggccgcgtcc tcgaccaatt cgccaacgcc
     1561 gacaacccgc gcatccacta cgagacgacc gggccggaga tctggaagga caccggcggg
     1621 cggatcaccc atttcgtcag cgcgatggga acgaccggaa cgatcaccgg cgtctcgcgc
     1681 ttcctgaagg agaagaaccc ggcgatccgg atcatcggcg cgcagccgag cgagggctcg
     1741 cgcatcccgg gaatccgcaa gtggccgcag gaatacctgc cgaagatcta cgacccgaag
     1801 gcggtcgacg agctcgtcct cgtcagccag gtcgatgccg aggaggtgac gcggcgcctc
     1861 gccagcgaag aaggcatctt cgccggcatc tcggcggcgg gcgcgtgctg ggtcgccttg
     1921 cagatcgccg cccaggtcga gaacgcgacg atcgtgttcg tcgtctgcga tcgcggcgac
     1981 cgttatcttt cgaccggcgt cttccccgct tgaacgcgcc tcaccagacc cgcttctgcg
     2041 tcaactgcgc gaccgcgctg gcgccgatct cgatcgagga agacggcggc accaagacgc
     2101 ggctgcgttg cccggcgtgc ggctggacgc actggaacaa cccgacgccg gtgctcgccg
     2161 cggtgatcga gctcgtcgat cgcgacggcc aggtcctgct tgcccgcaat gccgcctggc
     2221 ccggcaagtt ctacggcctg atcaccggct tcatggaagc gggcgaaaca cccgaggaag
     2281 ggatcgcgcg cgaggtcgcc gaagagactt cgctcacggt cgagtcgctt tcgctgatcg
     2341 gcgtgtacga gttcctgcgc atgaatcagg tcatcattgc ctaccatgcg gcggcgcgtg
     2401 gtgagatcgt gctgtcggcc gagctcgtcg cctaccggtt gttcccaccg gccgaggtca
     2461 actgctggcc ggcgggcacc gggcgggcgc tcgccgactg gctgcgcacg cgcggcatcg
     2521 agccgcgctg gatggacctg ccgccgggca agcgggcgac cgaagtggac gtggactgag
     2581 aagacgatga tggaagcgca aaaggaaatc gatacccgcg gcatgaactg ccctttgccg
     2641 atcctgaagg caaagaaggc gctcgccgac atgtcgagcg gcgacgtcct caaggtcgtc
     2701 gctaccgacc cgggctcggt gcgggatttc caggcgttcg cccgccagac cggcaacgag
     2761 ctgctcgagc agacgagcgc gaacgacgag ttcgttcact tcctgcgccg ccgctgacga
     2821 gcgcggccgc ggcgctcaga gcgttaggcc gcgcaggtag ctgcggaact cggcgccgag
     2881 ctccgggtgc tcgagggcga gctcgacgtt ggcctgcagg aagccttcct tgctgccgca
     2941 gtcgtagcga cggccctggt accggtaggc gaacaccttc tcgtgcctga gcaggccggc
     3001 gatgccgtcg gtgagctgga tctcgccgcc gacgccgcgc ggctgggcgg cgatctcgtc
     3061 gaagacgcgc ggcgtcagca cgtagcggcc ggcgacgccg aggcgcgagg gcgccacgtc
     3121 gggcgccggc ttctcgacga tccgttcgat gtcgaccagc cgctcgccga ccgcgcgccc
     3181 accgacgatg ccgtagcggc gcgtgtgctc ggccggcacc tcctgcacgg cgacgatcga
     3241 cgcctggcgt tcagcgaact gctcggccat ctgcgccagc accggcgggc tgccgatcat
     3301 caggtcgtcg ggaaggagga cggcgaacgg gttgtcgccg accagatggc gtccgcacag
     3361 caccgcgtgg ccgaggccca aggcctgcgc ctggcgcacg aagacgcact ccatgtcgtc
     3421 gggcttgacg gcgcgaacga tggcgagcag ctcggccttg tgcgagcgct cgagggcgtc
     3481 ctcgagctcg aaggtgcggt cgaaatggtc ctcgatcgcc cgcttgtgcc ggctggtgac
     3541 gaagatcatc tcgcgcacgc cggcggcgta ggcctcctcg accgcgtact gcacgagcgg
     3601 cttgtcgacc accggcagca tctctttcgg cagggccttg gtcgcgggca ggaaacgggt
     3661 gcccaggccg gccaccggaa agatcgcgtg tctgagggtc atttcgggtc gttcgtctac
     3721 ttacaatgcc ggggaagtct ccaagattct ggcacgcacg gtcgcttcag ccgggaaagg
     3781 aaacgcctca ggtggacctg ctcgtcatcg atccgatcga cgccgaggtg atgcgctggc
     3841 tcgcctcacg ccaccgtctc cgcttcgccc ccgagctcgc cttcgccccg cgcgagctgc
     3901 gccgcgcgct ctacaacgtc agggcagcca tcgtgccgtc gtcggtcagc atcgacgccg
     3961 agacgctcga tttcgctcct gtcctgcgcg cggtcggccg ggtcagcgcc ggctccgaga
     4021 acatcgacct cgaggcgtgc gagcggcgcc acgtcgaggt cgtgcgcagc ctgacggcga
     4081 gcgcccgtgc cgaggccgag ttcgtcatcg gcgccatgct ctccatgctg cgtcgcgttc
     4141 cggtgcgcgg gcccgacggc tcggtcgccg ggcgcgagct cggcggggca acgatcggcc
     4201 tggtcggcat gccaccttcg gcgcggacga tcgctcagct gctcgccgcg ttcggcgtcc
     4261 gcatcctcgg ctacgacccg gcgctgcacg cgagcgatcc gtcgtgggcc gactggcacg
     4321 tcagccacgc cggcctgcgc gagatcgtcg agcgcgccga cgtgctgtgc gtccagctcg
     4381 actacttcag ccgctaccac ggcctcctcg gcgaccggtt cctgcgccac tgcaagccga
     4441 accaggtggt cgtcagcacg gcgcattcgc gcctgttcga cgaggtcgcg ctggcgacgg
     4501 cgctgaagag cgggcgcatc gccgcggcct ggctcgacag cgtcgagccg ggtgcgctcg
     4561 atccgcaccg gccgctgcac gggatcgaga cgctgcaggt gacgccgcgc gtcgcctcga
     4621 cgacgcgcga gtcgcgtcag cgcagcgcat gggcggtggc gaggcggatc gacgagctgc
     4681 tcgaggcgcc ggcggcgacg cccgccgact tcaagtcgac gattccaggc gcgctcgctg
     4741 atctcgaagc cgattcgctg tcgccgtgaa gtcggcgagg cgcttcttct cctgatcgac
     4801 gacagccgcc ggagcgcggc cgacgaagct ctcgttcgcg agcctacccg tcgccttcgc
     4861 gatctcgccg tcgagccgat cgatctcctt cgtgagccgg gccgtctcgg cggcgcgatc
     4921 gatcttgacg tgcagcgcca gccgtgtcgc gccgacgacg gcgaccggtg agtcgctcga
     4981 cgcgtcggca aagcccgcgt cgtcggcgaa cagcgtcacc tccgagaggc gggcgagcga
     5041 cttcaggagc ggcgtcgcct cgcgcatgaa gtcggcgtcg ccgatggcat tcagcggcac
     5101 gcgctcgccg ggctgcaggc tcatctcgct gcgcaggttg cggcagctgc cgacgatcgc
     5161 cttcagtcgc tcgacccacg cgtcggcctt cgcatcgacg cgttcgagct gcgctttcgg
     5221 atacggcgcg cggacgatgc cgtgctcgct gccgtcgacc ttgcggccgg cgacgacggc
     5281 gacgcgctcc cagagctcgg cggtgatgaa cggcgtgatc gggtgcatca gccgcagcac
     5341 ggtctcgagc acgcgcagca gcgtgcgccg ggtcgcgcgc tgcgccggct cgctgctcga
     5401 ttgcagctgc accttggcga tctcgaggta ccagtcgcag tactcgtccc agacgaacga
     5461 atagatcgcc tgcgcgacgg catcgagccg gtactcggcg aacccctgcg cgaccaccgc
     5521 ctcgacgcgc tgcagctcgc cggtgatcca gcggtcggcg ggcgaaaagc tcaggtagtt
     5581 gtggaacggc tggccgggcg cgcactcggc cttggtgtgc tccgccaggc cgcaatcctt
     5641 gccttcgcag ttcatcagca cgaagcgggt cgcgttccag agcttgttgc agaagttgcg
     5701 gtagccctcg cagcgcttcg agtcgaagtt gacgtttcgg cccaggctgg cgagcgagca
     5761 gaaggtgaag cgcagcgcgt cggcgccgaa gccggggatg ccgttcggga actcggccgc
     5821 ggtgagctcg cggatgcgcg gcgcggtctc gggccggcgc agcccggtcg atcgtttctc
     5881 gagcaagggc tcgagggcga tgccgtcgat caggtcgacc ggatcgagga cgttgccttc
     5941 cgacttgctc atccgcttgc cctgcgggtc gcgcaccagg ccgtggatgt agacgtcgcg
     6001 gaacggcgcc ttgccggtga aatgcagcgt catcatgatc atccgggcga cccagaagaa
     6061 gatgatgtcg tggccggtga cgagcaccga ggagggcagg aagagctcga gctccttcgt
     6121 ctccttcggc cagccgaggg aagagaacgg caccaacgcc gacgagtacc aggtgtcgag
     6181 cacgtcggga tcgcgcacca gcgtgccgcc gtaacccgcg gcctcggcct tggcgcgcgc
     6241 ctcgtcctcg ctgcgggcga cgaagatctc gccgccgtcg ccgtaccagg ccgggatctg
     6301 atggccccac caaagctggc gcgagatggt ccagtcctgg atgttcttca tccactggtt
     6361 gtaggtgttg atccactgcg ccggatagaa cttgacggcg ccggtctcga ccgcctcgat
     6421 cgccttggcg gcgatgctcg taccgtcgcg cccgggcttg gtcgtcgcca cgaaccactg
     6481 gtcggtcagc atcggctcga cgacctgccc ggtgcggacg cagaccggca ccgcgtgctt
     6541 gtgcggcacc gccttctcga ggaagccttg cgtctcgagg tcgcgcagca cggccttgcg
     6601 tgcgtcgtag cgatccaggc cctggtacgc gaggggtccg ttctcgttga tcttcgcgtc
     6661 gagggtgaag atcgtgatca acggaatgcc gtggcggagt gcgcaggcgt agtcgttgaa
     6721 gtcgtgcgcg ccggtgatct tgacgcagcc cgagccgaac tcgcggtcga cgaagtcgtc
     6781 ggcgatgatc ggaatcttgc ggtcgcagag cggcaggtcg acgagcttgc cgatcagatg
     6841 ccggtagcgc tcgtcgtcgg gatggaccgc cagcgcgccg tcggcgagca tcgtctccgg
     6901 ccgcgtcgtc gcgatgtgca tgcccttcat cggctgcccg ttcgcatccg gctgagggcc
     6961 gtcgctgaac gggtagagga tgtgccacat cgtgccgtcg cgctcctcgt tctcgacctc
     7021 gaggtcggag acggccgaga gcagcaccgg gtcccagttg acgagcctct tgccgcggta
     7081 gatgaggccc tcgtcgtaga gcgagacgaa ggtgtcggtg acgacggccg agagccgctc
     7141 gtccatcgtg aagtactcgt acttccacgc gaccgagtcg cccatccggc gcatctggcg
     7201 cgtgatcgtc gagccgctcg tctccttcca gtcccagacc tggtcgatga acttcttgcg
     7261 gccgaggtcg tggcggctga gaccagcatc ctggagctga cgctcgacga cgatctgcgt
     7321 cgcgattccg gcgtggtcgg tgcccggcac ccagagcgtg ttgtcgccgc gcatgcggtg
     7381 gtggcggacc agcgcgtcca tgatcgtgtg ctggaacgcg tgccccatgt gcagcgttcc
     7441 cgtcacgttg ggcggcggca gctggatcgc gaacgacggc ttcgccggat cgagcgtcgg
     7501 ctcgtagacg ccgctctctt cccagagcgg gccccagtgc gcctcgatgg cggcggggtc
     7561 gaacgatttg gcgagctcgg tcgtggcgag cgtgtcgtgc ggtggcgtca tcgcaggacc
     7621 cgggctagcg atccgcgacc agctggcccg cgttcggcgc cgccgcggcg tcgcccagca
     7681 ggaatagcga atagacgtgg cccgacgcga gcgtgacgtt ggtggcgagg aagtactgga
     7741 ccgcgccgga gcgggcctcg acgcgcgcca gcccggcgct ggcagccacg ggcgcgtagg
     7801 ccgacgcggc gccgaacgcg gcgccgctgc cgacgagcgc gttgtcgacg gtcaaggtcg
     7861 ccgtgccgac ggcgccgttg agcgcgttga ccaagcgcag cttgaccggc cgcgccgcat
     7921 tcgacgagag cgacgtgtcg tcgttgatct gcgtcacggt cgagccggtg ccggtgacga
     7981 gcaaggtcac gtccgcgccg gcgcctgccg acaggggcgc cgccggcgtc accgtcgtgc
     8041 cgttgacctg caccgtcagc ggcccggcgg cgacgagctg gtacgggccg accgccggcg
     8101 aggtgaggcc ggctgcgacg gccgtgccgt tgacgctgac gtcgacgggc ccggccggca
     8161 cgacgctggc cgcgacgcga acgcgcgcca ggccgttggc tgcggtggtc gccgcgccct
     8221 gctggtcgag gaccagcccg tgcagcagga
//
LOCUS       DASVHM010000174         2329 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_300133, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000174 DASVHM010000000
VERSION     DASVHM010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2329
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300133"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..634
                     /locus_tag="VF308_03460"
     CDS             <1..634
                     /locus_tag="VF308_03460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7435739.1"
                     /translation="ELEALGARAAAFRADLSDETGCNALVPAVVARFERLDAVVNNAS
                     TFEYDSVETFSYAAMDRHWRANTGPALLLARALHAHLKGCAEVGCVVNLLDQKLWNPN
                     PDYLSYTLSKAALQAATVALAQALAPQVRVCGVAPGVTLPSGTMSAAAFEAAHRLTPL
                     ERSSTPADIAAAVRFLIGAPAITGTTLLVDGGQHLAAQHRDVLFLGNRDA"
     gene            637..1038
                     /locus_tag="VF308_03465"
     CDS             637..1038
                     /locus_tag="VF308_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEX7435740.1"
                     /translation="MQSLLSHPSLMDCRRLFLRNYEIRMNIGVHAFEKTAEQRVVINV
                     DLYIPLAVSTPKADALEEVVDYDFIRSTIAARVSRGHIHLQETLCDDVLALMLAHPRV
                     RAARVSTEKPDVYPDCDAVGCEVFGLKEPIR"
     gene            1035..1943
                     /gene="ttcA"
                     /locus_tag="VF308_03470"
     CDS             1035..1943
                     /gene="ttcA"
                     /locus_tag="VF308_03470"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HEX7435741.1"
                     /translation="MSAVLTEATRPKPTVEIAKLEKRLYRQVSHAIAAFNMIEAGDKV
                     MVCVSGGKDSYALLDILLGLQQRGATRFELVAVNLDQKQPGFPEHVLPAYLQSRGVAF
                     RIAEQDTYSVVKRLVPEGETMCGLCSRLRRGALYRVARELGATKIALGHHRDDMVQTL
                     FMNMFFGGRMKGMPPKLASDDGRHIVIRPLARVAEADLERWAAHRAFPIIPCLLCGNQ
                     ENLQRVRIRQMLHDWEREYPGRIDNLFNAMGSVVPSHLMDRNLFPFSTLQATGVAEAG
                     GDRAFDPDEDCGPREGTTPLPVRRVS"
     gene            1957..>2329
                     /locus_tag="VF308_03475"
     CDS             1957..>2329
                     /locus_tag="VF308_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011797246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4136 domain-containing protein"
                     /protein_id="HEX7435742.1"
                     /translation="MKTLFALAAGLALAGCAAMRSLDSDVSSYSQWPAERKPATYAFE
                     RLPSQQARPEQQQLLEDAARPAVEGAGFRPAADPKAADVTVQLGARITATDRSPFDDP
                     FWWGPGLHPPIPYARGGRVFWG"
BASE COUNT          373 a          848 c          757 g          351 t
ORIGIN      
        1 agagctcgaa gcgctgggcg cgcgcgcggc ggcgttccgc gccgatctct cggacgaaac
       61 cggatgcaac gcgctggtgc ctgcggtcgt cgcccgtttc gagcggctcg acgcggtggt
      121 caacaacgct tcgaccttcg agtacgactc ggtcgagacc ttcagctatg cggcgatgga
      181 caggcactgg cgcgccaaca ccggcccggc gctgttgctg gcccgggcgc tgcacgcgca
      241 cctgaagggc tgcgccgagg tcggctgcgt cgtcaacctg ctcgaccaga agctctggaa
      301 tccgaacccc gactatctgt cgtacacgct ctcgaaggca gcgctgcagg cggccaccgt
      361 cgccctcgcc caggcgctcg cgccgcaggt gcgggtgtgc ggcgtcgcgc cgggcgtgac
      421 cttgccctcg ggcaccatga gcgccgctgc gttcgaggcc gcgcatcggc tgacgccgct
      481 cgagcgttcg tcgacgccgg ccgacatcgc cgccgcggtg cgcttcctga tcggcgcgcc
      541 cgccatcacc ggcacgaccc tcttggtcga cggcggccag cacctcgccg cccagcaccg
      601 cgatgtgctc ttcctcggca accgagacgc ctgagcatgc agagcctcct cagccacccg
      661 agcctgatgg attgccgcag gctcttcctg cgcaactacg agatccgcat gaacatcggc
      721 gtgcacgcgt tcgagaagac cgccgagcag cgcgtcgtga taaacgtcga cctctacatc
      781 cccctcgccg tttcgacgcc gaaggccgat gcgctcgagg aagtggtcga ctacgatttc
      841 atccgcagca cgatcgcggc gcgggtctcc cgaggccaca tccacctgca ggaaaccctg
      901 tgcgacgacg tcctggcgct gatgctcgcg catccgcgcg tgcgcgccgc ccgcgtctcg
      961 accgagaagc ccgacgtcta ccccgactgc gacgcggtcg gttgcgaagt attcggactg
     1021 aaggagccca ttcgatgagt gcggtgctca ccgaagcgac ccgaccgaaa cccacggtcg
     1081 aaatcgccaa gctcgagaag cgcctgtatc gacaggtcag ccacgcgatc gcggccttca
     1141 acatgatcga ggccggcgac aaggtgatgg tgtgcgtctc gggcggcaag gacagctacg
     1201 cgctgctcga catcctgctc ggcctgcagc agcgcggggc gacccggttc gagctcgtcg
     1261 ccgtcaacct cgaccagaag cagccgggct ttccggaaca cgtgctgccc gcgtatctgc
     1321 agagccgcgg ggtcgcattc cgcatcgccg agcaggacac ctattcggtc gtcaagcgct
     1381 tggtacccga aggcgagacg atgtgcggcc tgtgttcgcg gctgcgccgc ggcgccctct
     1441 accgcgtggc gcgcgagctc ggcgcgacca agatcgcgct cggccaccac cgcgacgaca
     1501 tggtgcagac gctcttcatg aacatgttct tcggcggccg catgaagggc atgccgccca
     1561 agctcgccag cgacgacggt cggcacatcg tgatccggcc gctcgcgcgc gtcgccgagg
     1621 ccgacctcga gcgctgggcc gcgcaccgcg ccttcccgat catcccgtgc ctgctctgcg
     1681 gcaaccagga gaacctgcaa cgtgtgcgca tccgccagat gctgcacgat tgggaacgcg
     1741 agtatcccgg gcgaatcgac aacctcttca acgcgatggg cagcgtcgtg ccctcgcacc
     1801 tgatggatcg gaacctcttc ccgttcagca cgctccaagc caccggtgtg gccgaagccg
     1861 gcggcgatcg cgccttcgac ccggacgagg attgcggccc tcgcgagggc acgacgccgc
     1921 tgccggttcg gcgcgtgtcg tgaaccgggg atcggcatga agacactctt cgccttggcc
     1981 gcagggctcg cgctggcagg ctgcgccgcg atgcgcagcc tcgacagcga cgtctcgagc
     2041 tacagccaat ggcccgccga gcgcaagccc gcgacctacg cgttcgaacg cctgccgtcg
     2101 caacaggccc ggcccgaaca acagcaactg ctcgaggacg cggcgcgtcc ggcagtcgag
     2161 ggggcgggct tcaggcctgc ggccgacccg aaagccgccg atgtgacggt gcaactcggc
     2221 gcccgcatca ccgcgaccga ccgctcgcct ttcgacgacc cgttctggtg ggggccgggc
     2281 ctgcaccctc cgatcccgta tgcgcgcggc ggccgcgtct tctggggcc
//
LOCUS       DASVHM010000175         1711 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1094700, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000175 DASVHM010000000
VERSION     DASVHM010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1094700"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..282)
                     /locus_tag="VF308_03480"
     CDS             complement(<1..282)
                     /locus_tag="VF308_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HEX7435743.1"
                     /translation="MSATTPAGAQPYYFVPAPSRHPASAAFGLLLIIFGASQWVNGAP
                     WAAWVVLGGFVLWAFVLQQWFRQAIGESEGGLYGKRIDVSFRWSMSWFIF"
     gene            complement(321..539)
                     /locus_tag="VF308_03485"
     CDS             complement(321..539)
                     /locus_tag="VF308_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2970 domain-containing protein"
                     /protein_id="HEX7435744.1"
                     /translation="MAHPGRRKASLLRTLLAVVWSFFGVRKSKDLERDVGELNPLHLV
                     VAGVLVAALFVAALIALVNWVVKSGVAA"
     gene            complement(554..1177)
                     /locus_tag="VF308_03490"
     CDS             complement(554..1177)
                     /locus_tag="VF308_03490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015015503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HEX7435745.1"
                     /translation="MSLSAIARARTLVADNRRMVGKLVVVTVLMFGFGYALVPIYQTI
                     CEAIGINVLARAEVQSGEAVGAPLNSQVDLGRTVTIEFDANARGPWDFKPAQAKVDVH
                     PGEVTTVMYEFRNRQNRTMVAQAFPSYAPNVAMAHFKKLECFCFTEHVLKPGESKQWP
                     VVFVVDRKLPKDVRTITLSYTFFEVGGKTPVEPAALAAPLLPAKVAS"
     gene            complement(1181..1291)
                     /locus_tag="VF308_03495"
     CDS             complement(1181..1291)
                     /locus_tag="VF308_03495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome oxidase small assembly protein"
                     /protein_id="HEX7435746.1"
                     /translation="MTSEHQKKVNLRLALVLASIALVSFLGFIAKSAFFG"
     gene            complement(1303..>1711)
                     /locus_tag="VF308_03500"
     CDS             complement(1303..>1711)
                     /locus_tag="VF308_03500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013596170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEX7435747.1"
                     /translation="NESRGKLHFWWSLISFNVTFFPMHFLGLAGMPRRYADYPMQFTD
                     FNMIASIGAFGFGLSQVYFFFAVVLPMLRGKGETAPQQPWEGAEGLEWEVPSPAPFHT
                     FETPPLLNNAGTKIIGAPVPPHLDAAGGSAVPA"
BASE COUNT          296 a          560 c          604 g          251 t
ORIGIN      
        1 gaagatgaac cagctcatgc tccagcggaa cgagacgtcg atgcgcttgc cgtagaggcc
       61 gccttcgctc tcgccgatcg cctggcggaa ccactgctgc agaacgaacg cccacagcac
      121 gaagccgccg agcacgaccc acgcggccca gggcgcgccg ttgacccact ggcttgcgcc
      181 gaagatgatg agcaggaggc cgaacgcggc cgaggccgga tggcgcgacg gcgccgggac
      241 gaagtagtag ggctgcgcgc ccgccggggt cgttgccgac atgtggtgtt ctcctgccta
      301 tttccgaatt cttggggcgc tcaggcggcg acgccgctct tgaccaccca gttgaccagc
      361 gcgatcagcg cggcgacgaa gagcgcggcg acgagcacgc cggcgacgac gagatggagc
      421 gggttcaact cgcccacgtc gcgctcgagg tccttcgact tgcgcacgcc gaagaacgac
      481 cagacgaccg ccagcagcgt gcgcagcagc gaggccttgc ggcggccggg gtgcgccatg
      541 gcgtcgctct cggtcacgac gccaccttgg ccggcagcag cggcgcggcc agtgccgccg
      601 gctcgaccgg cgtcttgccg ccgacctcga agaaggtgta cgagagggtg atcgtgcgca
      661 cgtccttcgg gagcttgcga tcgacgacga acaccaccgg ccactgcttc gactcgcccg
      721 gcttcagcac gtgctcggtg aagcagaaac actcgagctt cttgaagtgc gccatcgcca
      781 cgttgggcgc atagctcggg aacgcctgcg ccaccatggt ccggttctgg cggttgcgga
      841 actcgtacat cacggtcgtc acttcgccgg gatggacgtc gaccttcgcc tgcgccggct
      901 tgaagtccca ggggccgcgc gcgttggcgt cgaactcgat cgtgacggtc cggccgaggt
      961 cgacctgcga gttcaggggc gccccgaccg cctcgccact ctgcacctcg gcgcgggcga
     1021 gcacgttgat gccgatcgct tcgcagatcg tctggtagat cggcaccagc gcgtagccga
     1081 agccgaacat cagcaccgtg acgacgacga gcttgccgac catgcgccgg ttgtcggcga
     1141 cgagcgtcct ggcgcgggcg atggcggaca gtgacatcgg ctagccgaag aaggcgctct
     1201 tggcgatgaa gccgaggaag gagacgagcg cgatcgacgc cagcacgagc gcgagtcgca
     1261 ggttgacctt cttctggtgc tcggacgtca tcgcgacggt gctcaggcgg ggacggcgct
     1321 gccgcccgcg gcgtcgaggt gcggcggcac gggcgcgccg atgatcttgg tgccggcgtt
     1381 gttgaggagc ggcggcgtct cgaaggtgtg gaacggcgcc ggcgacggca cttcccactc
     1441 gaggccctcc gcgccttccc acggctgctg cggcgccgtc tcgcccttgc cgcggagcat
     1501 cggcaggacg accgcgaaga agaagtacac ctgcgacagg ccgaagccga aggcgccgat
     1561 cgacgcgatc atgttgaagt cggtgaactg catcgggtag tcggcgtagc gacgcggcat
     1621 gccggccagc ccgaggaagt gcatcgggaa gaaggtcacg ttgaaggaga tcagcgacca
     1681 ccagaagtgg agcttgccgc gcgactcgtt g
//
LOCUS       DASVHM010000176         4065 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1382566, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000176 DASVHM010000000
VERSION     DASVHM010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4065
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1382566"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..353)
                     /locus_tag="VF308_03505"
     CDS             complement(<1..353)
                     /locus_tag="VF308_03505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006482863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMR family transporter"
                     /protein_id="HEX7435748.1"
                     /translation="MTLPTFLFILTGVLLNAGAQLLLKAGVNPLGPISVELATLLPTA
                     ARVLTQWPIIAGLGCYVLSVGVWIVALSRVDVSLAYPMLSLGYVVNALAAWWLFGEVL
                     GPMRCAGILLILAGV"
     gene            complement(350..1999)
                     /locus_tag="VF308_03510"
     CDS             complement(350..1999)
                     /locus_tag="VF308_03510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011300102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEX7435749.1"
                     /translation="MARLHPIGWLVVALLCAWFLTLDFRHLLRSDEGRYAEIAREMFA
                     TGDWVTIRYNGLKYFEKPPFHLWMTALAYHAFGVGEWQARLWVAISGAVGLLATTLAA
                     RRWFGLRVGLLTGVVLLAMPTWNLGAHFNSLDMSVSGALACVLAGVLMAQHPRAAPKS
                     RRAWMWFAWAAMAVAVLTKGLIGVALPGLVLIVYTLVARDWALWRRLHLVSGAGLMLA
                     IAAPWFVLVSLRNPEFAQFFFIHEHWQRYTSSVHQRDAPIWYFVPQLLAGFLPWLGLT
                     FGIAARVRHGARGGGFRPALLLAVWAGAIFVFFSLSSSKLPGYIMPIFPALAVLAALA
                     LDKLGAAAWNRQILGMLLVAAIGLLSSPLIGRLGSDDGSQALFRSFALWVGAACVLAV
                     AGLAVARHLNRTGDPFRSIAAFALTLFVATTVGLLGHESLGRSSSGVDLVAPMRALLT
                     PDMPIYSVRLLDHTLPFYLQRTTIMVEGADELEFGARQEPGKWLPTLAAFLKEWSSGR
                     RALAIMSHETHAALLGENTVMIPVAQDARRVVVANFPIASP"
     gene            complement(2089..2862)
                     /locus_tag="VF308_03515"
     CDS             complement(2089..2862)
                     /locus_tag="VF308_03515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7435750.1"
                     /translation="MGLNSGITDWAGRVVWLVGASTGIGRATAALLHGQGARVVVSAR
                     NGAALAEFEADHAGSLGLALDATDRVAMQAAAARIVAERGRIDLACYCAGTYQAMRAT
                     AFDLDLALRHNSVIYVGALHLLDAVLPRLIAQQAGHLSLVASVAGYRGLPNSLAYGPT
                     KATLINLAQTLWLDLEPLGIGVSVVNPGFVATPLTSGNDFDMPALISAEQAAGEIVQG
                     WADGEFEIHFPKRFTRSMKALSHLGDDLYFKAIRKTTGL"
     gene            complement(2922..4065)
                     /locus_tag="VF308_03520"
                     /pseudo
     CDS             complement(2922..4065)
                     /locus_tag="VF308_03520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855775.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
BASE COUNT          724 a         1343 c         1446 g          552 t
ORIGIN      
        1 aagacgccgg cgaggatcaa caggattccg gcgcagcgca tcggcccgag gacttcgccg
       61 aacagccacc aggcggcgag ggcgttgacg acatagccga gcgagagcat cgggtaggcg
      121 agcgacacgt cgacccgcga cagcgcgacg atccacacgc cgacgctgag cacgtagcag
      181 ccgagtccgg cgatgatcgg ccactgcgtg agcacgcggg ccgcggtcgg caacagcgtc
      241 gccaactcga cgctgatcgg gcccagcggg ttcaccccgg ccttcaacag cagctgggcg
      301 ccggcgttga gcagaacgcc cgtgaggatg aagaggaagg tcggcagcgt catggcgatg
      361 cgatcgggaa gttggcgacg acgacacggc gtgcgtcttg cgcgaccggg atcatgaccg
      421 tattttcgcc gagcagcgcc gcatgggtct cgtgcgacat gatcgcgagc gcccgccgtc
      481 ccgatgacca ttccttcagg aaggccgcga gcgtcggcag ccacttcccg ggttcctgcc
      541 gggcgccgaa ctcgagctcg tcggcccctt cgaccatgat cgtcgtgcgt tgcaggtaga
      601 acggcagcgt atggtcgagc aggcgcaccg aatagatcgg catgtcgggt gtcaagagcg
      661 cgcgcatggg cgccaccagg tcgactccgg agctgctgcg gccgaggctc tcgtgcccga
      721 ggagcccgac cgtggtcgcc acgaacagtg tcagtgcgaa cgcggcgatg ctgcgaaagg
      781 ggtcgccggt gcgattcagg tgtcgggcca cggcgagtcc ggcgacggcc agaacgcagg
      841 ctgcgccgac ccatagcgcg aaactgcgaa acagcgcctg gctgccgtcg tcggaaccga
      901 gccggccgat caacgggctg gacagcaggc cgatcgccgc gacgagcagc atgccgagga
      961 tctggcggtt ccacgccgcg gcgcccagct tgtcgagcgc caacgcggcc agcaccgcga
     1021 gtgccggaaa gatgggcatg atgtagccgg gcagcttgga gctcgacagg ctgaagaaga
     1081 cgaagatcgc gccggcccag acggccagca gcagggccgg cctgaacccg ccgccccggg
     1141 ccccgtgccg gacccgggcg gcgatgccga acgtcaatcc gagccacggc agaaagccgg
     1201 cgagcaactg cggcacgaag taccagatcg gcgcgtcgcg ctggtggacg ctcgaggtgt
     1261 agcgctgcca atgctcgtgg atgaagaaga actgcgcgaa ctcggggttg cgcaacgaaa
     1321 cgagcacgaa ccagggcgct gcgatggcca gcatcagccc ggcgccgctg acgaggtgga
     1381 gccggcgcca caacgcccag tcgcgtgcca ccagcgtgta gacgatcaac acgagccccg
     1441 gcagcgcgac accgatcagc cccttggtca ggacggcgac ggccatggcg gcccaggcaa
     1501 accacatcca ggcgcgtcgt gatttcggcg cggcccgcgg atgctgcgcc atcaggacgc
     1561 cggccagcac gcaggccagc gcgccggaga cgctcatgtc gagcgaattg aaatgggcgc
     1621 cgaggttcca ggtcggcatg gccagcagca cgacgccggt cagcaagccc acccgcagac
     1681 cgaaccagcg ccgagccgcc agcgtcgtcg cgagcaggcc gacggccccg ctgatggcga
     1741 cccacagccg cgcctgccac tcgccgacgc cgaacgcgtg gtaggcgagg gccgtcatcc
     1801 aaagatgaaa cggcggcttc tcaaaatact tgagaccgtt gtagcggatc gtcacccagt
     1861 cgccggtcgc gaacatctcc cgcgcgatct cggcgtagcg cccttcgtcg gaacgcagca
     1921 gatggcggaa gtccagggtc aggaaccagg cgcagagaag ggcgacgacg agccacccga
     1981 tggggtgaag ccgcgcgatc ccgccaggcg cgtgcgggtc cgatgatcca tgatgtccgc
     2041 ccaaggctcg catcgtagtg gatgtggacg gcccccgcgc ataggttctt agaggcccgt
     2101 cgtcttgcgg atcgccttga agtaaaggtc gtcgccaaga tggctcagcg ccttcatcga
     2161 tcgggtgaag cgcttcggga agtggatctc gaattcgccg tcggcccagc cctggactat
     2221 ctcgccggcc gcctgctcgg cgctgatcag cgccggcatg tcgaagtcgt tgcccgaggt
     2281 gagcggcgtc gcgacgaagc cggggttgac caccgagacg ccgatgccga gcggctcgag
     2341 gtcgagccag agggtttgcg cgaggttgat cagcgtcgcc ttcgtcggcc cgtaggcgag
     2401 cgagttcggc aggccgcgat agccggcgac gctcgcgacc aggctcaggt ggccggcctg
     2461 ttgcgcgatc aaccggggca gcaccgcgtc gagcagatgc agcgcgccga catagatgac
     2521 cgagttgtgg cgcagcgcca ggtccaggtc gaaggccgtc gcccgcatcg cctggtaggt
     2581 gccggcgcag tagcacgcca agtcgatgcg cccgcgctcg gcgacgatgc gcgctgcggc
     2641 ggcctgcatc gcgacccggt cggtcgcatc gagcgcgagg ccgaggctgc cggcgtggtc
     2701 ggcctcgaat tcggcgagcg ccgcgccatt gcgcgccgag acgacgaccc gggctccctg
     2761 accgtgcagc agcgccgcgg tcgcgcgccc gatgccggtc gaggcgccca cgagccagac
     2821 gacgcggccg gcccagtcgg tgatgcccga gttgagtccc atggccggcc tactttctgc
     2881 aagaggtcag ggcgagcagg agcgcgctgc ggcgtcccat gtcaggcgtg ccgcaatgtg
     2941 aactgcatga cgctggtgtt gccggtcgca aacgccgctt cgcaataggc gaggtagaac
     3001 tcccagatgc gcatgaaccg gatgtcgaag ccgagctggc gcaccggtcc ttcggcgccg
     3061 aggaaacggg cgcgccagcg ccgcagcgtc tcggcgtagt cgaggccgaa atcgagttcg
     3121 ttgacgacgg cgagtccggc cgccgcggcc gccgcacgga acgccgtggg gctgggcaag
     3181 aggccgcccg gaaaggtgta ttgctggatg aaatcggtcg agcggaccag cgctcgaaca
     3241 ggtcgtcgcg aatcgtgatg ctctggacgc aggccttggc gccgggcttc aactgcgcgc
     3301 gcacggtttc gaagaatgcc ggccagtatt cgcgtcccac ggcttcgaac atctcgatcg
     3361 aggcgatcgc atcgaagggg ccgtcggcga tgtcgcgata gtcctgaaac cgcagctcgc
     3421 ccggcaggcc ggcctcggcg aggcgcgttt tggcccaggc gagttgttcg cgcaagaggg
     3481 tcacgccctg caccgcggcg ccgaagtcgc gcgccgcgca ttcggcgagc gcgccccagc
     3541 agcagccgat ctcgagcacg cggtcgcccg gcccgacgcc gcattcagcg agggcacgcc
     3601 gcgtcttggc ccattgcgcc gcgaccaggt cgcgggagca gtcgccttcg aaccaggcgc
     3661 cgctgtagtt catcgtcggg tcgagccaga gccggtagaa ctcgttgccg aggtcgtagt
     3721 gggcgtggat gttcttctgg ctgccacggc gcgaagtgcg gttgacgagg tgcttgaccc
     3781 ggtacagcaa cgagctccac caggtcccgt agaacatcgc gtcgacgtcg tcccggttcg
     3841 tgaggaagag ctcgagcagc gcgggcagat cgggcgaggt ccagtcgccg gcgacgaagg
     3901 tctcggcaaa gccgatgtcg cccgacttca gtgccgcgcc gcatacgttc cagctcgcga
     3961 gccgcatcgc cgcgcgcggc tcgccttcgg cgcggctgcc gaagcggatc atcgagccgt
     4021 cgggcagacg cagttcgagc gaaccgtggc ggagtctttc gagca
//
LOCUS       DASVHM010000177         1589 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_373713, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000177 DASVHM010000000
VERSION     DASVHM010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373713"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1589
                     /locus_tag="VF308_03525"
     CDS             <1..>1589
                     /locus_tag="VF308_03525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016445091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7435751.1"
                     /translation="AARGGVAVRLGDVASVQVGPEMRRGIAELDGEGEVTGGVVILRS
                     GKNAQATIAAVKARLDELKASLPAGVEIVTTYDRSQLIERAIRNLSGKLLEEFVVVAA
                     VCAVFLWHLRSSLVAIISLPLGLLVAFIVMRMQGINANIMSLGGIAIAIGAMVDAAVV
                     MIENAHKKIEAWQHAHPGAALKGAAHWKVVTDAAVEVGPALFFSLLIITLSFIPVFTL
                     EAQEGRLFGPLAFTKTYAMAAAAALSATLVPVLMGYWIRGRIADERRNPISRVLIASY
                     RPVLDRVLRHPKTTLALAVLALATTAWPALRLGGEFLPPLDEGDLLYMPTALPGLSAA
                     KASELLQQTDRMIRTVPEVARVFGKAGRAETATDPAPMEMFETTIQLKPREQWRAGMT
                     PEKLVEELDAAVKVPGLANIWIPPIRNRIDMLATGIKSPIGVKVSGTDLRAIDRIAGE
                     VERVAKTVPGVSSSLAERLTGGRYVDVQIDRQAAGRYGLNIADVQSVVAGAIGGETVG
                     ETVEGLARFPINLRYPRELRDS"
BASE COUNT          243 a          529 c          573 g          244 t
ORIGIN      
        1 gcggcgcgcg gcggcgtcgc ggtccgactc ggcgatgtcg cctcggtgca ggtcggtccc
       61 gagatgcggc gcggcatcgc cgagctcgac ggcgagggcg aggtgacggg cggcgtggtg
      121 atcctgcgtt cgggcaagaa cgcgcaggcc acgatcgccg ccgtgaaggc ccggctcgat
      181 gaactgaagg cgagcctgcc cgccggggtg gagatcgtga ccacctacga ccgcagccag
      241 ctcatcgaac gcgcgatccg caacctgtcg ggcaagctgc tcgaggagtt cgtcgtcgtg
      301 gcagcggtct gcgcggtgtt cctgtggcat ctgcgctcgt cgctggtggc gatcatctcg
      361 ctgccgctcg gcctcctggt ggccttcatc gtgatgcgca tgcagggcat caacgccaac
      421 atcatgtcgc tcggcggcat cgccatcgcg atcggcgcga tggtggatgc ggcggtcgtg
      481 atgatcgaga acgcgcacaa gaagatcgaa gcctggcagc acgcccaccc gggcgcggcg
      541 ctaaagggcg cggcgcactg gaaggtggtg acagatgccg ccgtggaggt ggggccggcg
      601 ctgttcttca gcctgctgat catcacgctg tcgttcattc cggtgttcac gctggaagcc
      661 caggagggcc ggcttttcgg tccgctcgct ttcaccaaga cctatgcgat ggcggcggcc
      721 gcggccctgt cggccacact cgttccggtg ctgatgggct actggattcg cgggcgcatt
      781 gccgacgaga ggaggaaccc catcagtcgc gtgttgatcg cgtcgtaccg gccggtgctc
      841 gaccgcgtac tgcgccatcc gaagaccacg ctcgcgctcg ccgtgctggc gctggccacg
      901 acggcctggc cggcgctgcg cctcggcggc gaattcctgc cgccgctcga cgagggcgac
      961 cttctctaca tgccgacggc gctgccgggg ctgtcggcgg ccaaggcgtc cgagctgctg
     1021 cagcagaccg accggatgat ccggaccgtc cccgaagtgg cgcgcgtatt cggcaaggcc
     1081 ggccgcgccg agactgccac cgacccggcg ccgatggaga tgttcgagac gacgatccag
     1141 ctcaagccgc gcgagcagtg gcgcgccggc atgacgccgg aaaaactggt cgaggaactc
     1201 gacgcggccg tcaaggtgcc gggcctggcc aacatctgga tcccgccgat ccgcaaccgc
     1261 atcgacatgc tcgccaccgg catcaagagc cccatcggcg tgaaggtctc gggcaccgac
     1321 ctgcgtgcga tcgaccgcat cgcgggcgag gtcgaaaggg tggccaagac ggtgcccggc
     1381 gtcagctcgt cattggccga gcggctgacc ggcggccgct atgtcgacgt gcagatcgac
     1441 cgccaagccg cgggccgcta cggcctgaac atcgccgacg tgcagtcggt ggtggcgggc
     1501 gcgatcggcg gcgagacggt gggcgagacg gtcgaggggc tggcgcgctt cccgatcaac
     1561 ctgcgctatc cgcgcgagct gcgcgactc
//
LOCUS       DASVHM010000178         4834 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_879279, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000178 DASVHM010000000
VERSION     DASVHM010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4834
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_879279"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..892)
                     /locus_tag="VF308_03530"
     CDS             complement(<1..892)
                     /locus_tag="VF308_03530"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7435752.1"
                     /translation="MAKKKTIRTIPQARTPMPEQSPEVRVKNFDEVACGYRLEDALVE
                     ADRCLDCADEPCVKGCPVGIDIPGFIRKMAAKNFHGAYDTITDTNLLPSVCGRVCPQE
                     SQCEGVCTVGETLEPVAIGRLERFVGDMAIREGWANVPYIQPSRFKVGIVGSGPAGMA
                     CAADMAKAGCEVTVYEAFQEPGGVLKYGIPDFRLPNSVVDVEIEKLTRLGIRFECNTL
                     VGRLFTLEQMLTEMGFHAVFVGTGAGYPSFMGIPGESLNGVLSANEWLTRCNLMHGRD
                     FPSYDTPLQPGKRVAVVGAGN"
     gene            complement(928..1821)
                     /locus_tag="VF308_03535"
     CDS             complement(928..1821)
                     /locus_tag="VF308_03535"
                     /inference="COORDINATES: protein motif:HMM:NF004862.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfide/dihydroorotate dehydrogenase-like
                     FAD/NAD-binding protein"
                     /protein_id="HEX7435753.1"
                     /translation="MTDFEIVRREDFSEVTYMLEIAHPAMAKAARPGQFVIVMEHAHG
                     ERIPLTIADFDRERGTITLVIQAVGKTTREMQQNCRVGTRLHAVVGPLGIPSHIGQAK
                     KVVCVGGGLGVAPVFPQARAYHESGAYVIGVLGFRSKSLIFWEDKFGACCNELIVCTD
                     DGSAGIKGLVTEGIRQAIAKHPDIEEVVAIGPPIMMKGCAEATRPHGIRTMVSLNPVM
                     VDGTGMCGGCRVKIGEQIKFACVDGPDFDGHQVDFDDLMARLGRYKPTEKAALDAWKD
                     ESCRIRGGADPLASTPAVGGR"
     gene            2019..2597
                     /locus_tag="VF308_03540"
     CDS             2019..2597
                     /locus_tag="VF308_03540"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEX7435754.1"
                     /translation="MTTSSSPVGATPSAGSPGAFEVLDACHRQTVDMLARLSALVGGL
                     DKSGPDREARRTADEIIQFFSQTARQHHEDEERHVFPQLQDSDDPEIVQAVLRLQQDH
                     HWMDVDWKELSPAIAAVADNRGGYDLEALREGVEIFTALSHDHIALEESCIYPQARIR
                     FGSAELQQMGREMAERRRVRSARTANAGGTGS"
     gene            complement(2625..3605)
                     /locus_tag="VF308_03545"
     CDS             complement(2625..3605)
                     /locus_tag="VF308_03545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7435755.1"
                     /translation="MNRRQLLALAVPGLAAALAASPALAQSAYPDKPITMIVPFPPGG
                     VADTVARPVAEALARELKQPVVVENRAGAGGALGIGVASRAAADGYTVLLSLSSISIL
                     PEADRILGRKPAYLLSQFRPIARFTADPTVLVVRADSRWKTFADFLADTRANPGTYNY
                     GSSGNYGTMHVPMEMLKAEAGFRMTHIPYTGAGPAVIALLAGQVDAISTGPSTVAQQI
                     QAGKLRALAHWGEHPLAALPDVPSLKQLGHPVHFAQWSALFVPTGTPDDVIRKLRAAS
                     AKVAADAAVRQVIAKAGSPIEYLDAPEFQTYWDADAAEMTKAVRAVGKVE"
     gene            3701..4711
                     /locus_tag="VF308_03550"
     CDS             3701..4711
                     /locus_tag="VF308_03550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7435756.1"
                     /translation="MSEARSTAALPARAVRVALRPIAAVALALAAPLVAAQDYPSKPV
                     RIIVPFAAGGPADVYARFIAQRLQESMGQTFIVDDRPGAGSIIGTDAVAKSPADGYTL
                     LLMSNTHTVNESLIPTKPFQLMRDFVPVAPINSSDLVLVARSGLPASTLAELIAAAKA
                     KPGALSYASSGPGTPYHMAGELFKAMAGVSILHIPYKGSSGARTDVLGGQVDMMFDAV
                     PTMTEHIRAGKVKALGTTGAARSAVMPDVPTIAEAGVPGYEATIWLGLMAPKNTPPQI
                     VARLNAEVAKIVAHPDTAKAWKAQGATPMTMSTAEFTRYLNDDIVKWAHIVKVSGAKA
                     EQ"
BASE COUNT          750 a         1686 c         1647 g          751 t
ORIGIN      
        1 tgttgccggc gccgaccacg gcgacgcgct tgccgggttg cagcggcgtg tcgtagctcg
       61 ggaagtcgcg cccgtgcatc aggttgcagc gggtcagcca ttcgttcgcc gagagaacgc
      121 cgttgagcga ctcgccgggg atccccatga agctcgggta gcccgcgccg gtgccgacga
      181 agaccgcgtg aaagcccatc tcggtgagca tctgctcgag ggtgaagagg cgccccacga
      241 gggtattgca ctcgaacctg atgccgaggc gcgtgagctt ctcgatctcg acgtcgacga
      301 cgctgttggg caggcggaag tcggggatgc cgtacttcag cacgccgccg ggctcctgga
      361 acgcctcgta caccgtgacc tcgcagcccg ccttggccat gtcggcggcg cacgccatgc
      421 cggccggccc cgagccgacg atgccgacct tgaaccggct cggctggatg tacggcacat
      481 tggcccagcc ttcgcggatg gccatgtcgc cgacgaagcg ctcgaggcgt ccgatcgcca
      541 ccggctcgag cgtttcgccc accgtgcaca cgccctcgca ctggctctcc tgcgggcaga
      601 cgcgcccgca gaccgacggc agcaggttgg tgtcggtgat cgtgtcgtag gcgccgtgga
      661 agttcttggc cgccatcttc cggatgaagc ccgggatgtc gatgccgacc gggcaaccct
      721 tgacgcacgg ctcgtcggcg cagtcgagac agcggtccgc ctcgacgagc gcgtcttcga
      781 gccgatagcc gcaggccacc tcgtcgaagt tcttcacccg cacctcgggg ctctgctcgg
      841 gcatcggcgt gcgcgcctgc ggaatggtcc ggatcgtctt cttcttggcc atcgcctggt
      901 cctcgcgtgc tcggagagga atgtcgatca gcgcccgcca acggcgggcg tcgacgcgag
      961 cggatccgcg ccgccgcgga tgcgacagct ctcgtccttc caggcgtcga gggcggcttt
     1021 ttcggtgggc ttgtagcggc cgaggcgcgc catgagatcg tcgaagtcga cctggtggcc
     1081 gtcgaaatcg ggcccgtcga cgcaggcgaa cttgatctgc tcgccgatct tgacgcggca
     1141 cccgccgcac attccggtgc cgtcgaccat caccgggttc aggctcacca tcgtgcggat
     1201 gccgtgcggg cgggtcgcct cggcgcatcc cttcatcatg atcggcgggc cgatggcgac
     1261 gacctcctcg atgtcggggt gcttggcgat cgcctgccgg atgccctcgg tgacgaggcc
     1321 cttgatgccc gccgagccgt cgtcggtgca gacgatcagc tcgttacaac aggcgccgaa
     1381 cttgtcttcc cagaagatga gggacttgct gcgaaagccg agaacgccga tcacgtaggc
     1441 gccgctctcg tgatacgcgc gtgcctgcgg gaagacgggc gcaacgccca ggccgccgcc
     1501 gacgcacacc accttcttcg cctgcccgat gtggctcggg attcccagcg ggccgacgac
     1561 ggcgtgcagc cgggtgccga cgcggcagtt ctgctgcatc tcgcgcgtgg tcttgccgac
     1621 cgcctggatg acgagggtga tcgtgccgcg ctcgcgatcg aagtcggcga tcgtcaaggg
     1681 gatccgctcg ccgtgggcat gctccatcac gatcacgaat tggccggggc gcgctgcctt
     1741 ggccatcgcc ggatgggcga tctcgagcat gtacgtgact tcggaaaagt cttcacgcct
     1801 gacgatctcg aagtcggtca ttgcaaccct ctggaaatgc cttgacggcc aaagccgaga
     1861 ctagtaaacc cgccagatgc ctcgttgcga tggatcaagc gcgaaggcga tcgtcgaagc
     1921 cgatcgtcgc gagccggccg gtgtcggggg gtcgtcttgt tccagatcaa actcgatctt
     1981 cggagacccc ctacgctgaa tgcaaaccgg agctgcccat gaccacgtcg tcttctcccg
     2041 tcggcgccac cccatcggct ggctccccag gcgccttcga ggtgctcgat gcctgtcatc
     2101 gacagacggt cgacatgctc gccaggctct ccgccttggt cggcggcctc gacaagagcg
     2161 gtccggaccg cgaggcgcgc cggacggccg acgagatcat ccagttcttc tcgcagacgg
     2221 cgcgtcagca ccacgaagac gaggaacggc atgtcttccc gcagttgcag gacagcgatg
     2281 accccgagat cgtgcaggcc gtgctccggc tgcaacagga tcaccactgg atggacgtcg
     2341 actggaagga gctctcgccc gccatcgccg cggtggccga caaccggggc ggctacgacc
     2401 tcgaggcgtt gcgcgagggc gtcgagatct tcaccgcgct ttcgcacgat cacatcgcgc
     2461 tggaggagtc ctgcatctac ccccaggccc ggatccgctt cggcagcgcc gagctgcagc
     2521 agatggggcg cgagatggcc gagcgccgcc gcgtccggtc ggcaaggacg gctaacgccg
     2581 gcggcaccgg gtcctaggct ccccgcgcga cttgcgctta gcagctactc caccttgccg
     2641 accgcccgca ccgccttcgt catctcggcc gcgtcggcgt cccagtaggt ctggaactcg
     2701 ggcgcgtcga ggtactcgat cgggctgccg gccttggcga tcacctggcg cacggcggcg
     2761 tcggcggcga ccttcgccga ggcagcgcgc agctttctga tcacgtcgtc gggcgttccg
     2821 gtcggcacga acagcgccga ccattgcgcg aaatgcaccg ggtggccgag ctgcttcagg
     2881 ctcggcacgt cgggcaacgc cgcgagcgga tgttcgcccc agtgcgcgag cgcgcgaagc
     2941 tttccggcct ggatctgctg cgcgaccgtc gacgggcccg tcgagatcgc gtcgacctgg
     3001 ccggcgagca gggcgatcac cgccggcccg gcgccggtat acgggatgtg cgtcatgcga
     3061 aagccggcct cggccttgag catttccatc ggcacgtgca tcgtcccgta gttgcctgag
     3121 ctgccgtagt tgtaggtgcc gggattcgcg cgcgtgtcgg cgaggaaatc ggcgaaggtc
     3181 ttccagcgcg agtcggcgcg cacgacgagc accgtcggat cggcggtgaa gcgcgcgatc
     3241 ggccggaact ggctcagcag gtaggccggc ttcctgccga ggatgcgatc ggcctcgggc
     3301 aggatcgaga tcgacgacag gctgagcagc accgtgtagc cgtcggccgc ggcgcgcgac
     3361 gcgacgccga tgccgagcgc gccgccggcg ccggcgcggt tctcgaccac gaccggctgc
     3421 ttcagctcgc gcgccagcgc ctcggccacc ggccgcgcga ccgtgtcggc gacgccgccg
     3481 ggcgggaacg ggacgatcat cgtgatcggc ttgtcgggat aggccgactg cgcgagtgca
     3541 ggcgatgcgg ccagcgccgc ggcgaggccg ggcacggcga gcgcgagaag ctgtcttcgg
     3601 ttcatgcgcc gatgctactc actgccgcct cggcccgcgc cgggcccgac ataacatcgg
     3661 cgccagatgc ggcccatggc cgacccgaac ggagacacga atgagcgaag cccgatccac
     3721 cgccgcgctg ccggcccgcg ccgtgcgagt cgcattgcgg ccgatcgccg ccgtcgcgct
     3781 cgcgctcgcg gcgccgctcg tcgccgccca ggactacccg agcaagccgg tgcggatcat
     3841 cgtccccttc gccgccggcg gtccggccga cgtctacgct cgcttcatag cgcagcgtct
     3901 gcaggagtcg atgggccaga ccttcatcgt cgacgaccgg cccggcgccg gctcgatcat
     3961 cggcaccgac gcggtcgcca agagcccggc cgacggctac acgctgctgc tgatgtcgaa
     4021 cacccacacg gtcaacgaat cgctgatccc gaccaagccg ttccagctca tgcgcgattt
     4081 cgttccggtc gcgccgatca actcgtcgga cctcgtcctc gtcgcgcgca gcggcctgcc
     4141 ggcgtcgacg ctggccgagc tgatcgccgc ggcgaaggcc aagcccggtg cgctctcgta
     4201 cgcgtcgtcg ggcccgggta cgccgtacca catggccggc gagctgttca aggcgatggc
     4261 cggcgtctcg atcctgcaca tcccgtacaa gggcagctcg ggcgcgcgca ccgacgtcct
     4321 cggcggccag gtcgacatga tgttcgacgc cgtgccgacg atgaccgagc acatccgcgc
     4381 cggcaaggtc aaggcgctcg gcacgaccgg cgcggcgcgc tcggccgtga tgcccgacgt
     4441 gccgacgatc gccgaggccg gcgtgccggg ctacgaggcg acgatctggc tcggcctgat
     4501 ggcgccgaag aacacgccgc cgcagatcgt cgcccgcctc aacgccgagg tcgcgaagat
     4561 cgtcgcccac cccgacacgg cgaaagcatg gaaagcacag ggcgcgacgc cgatgacgat
     4621 gagcaccgcc gagttcaccc gctacctcaa cgacgacatc gtcaagtggg cgcacatcgt
     4681 caaggtctcg ggcgccaagg cagagcaatg agtccggccg ggcccgaatg cgagccatgc
     4741 cgggagagct gaacgtcctc tgcgccggcg ccgtcaaggg cctggtgctc gcggtgcagg
     4801 gcggtttcga gaacgcgacc gggctgcgcc tgca
//
LOCUS       DASVHM010000179         3130 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_373752, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000179 DASVHM010000000
VERSION     DASVHM010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3130
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373752"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..459
                     /locus_tag="VF308_03555"
     CDS             <1..459
                     /locus_tag="VF308_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HEX7435757.1"
                     /translation="LNFHGNVEGNDIFKGTTDIVVCDGFVGNVALKTAEGLASMLSNF
                     LRQEFTRSVFTRVAALAALPVLNRFKARVDHRRYNGAALLGLRGLVFKSHGSADAFAF
                     EQALNRAYDAARHGLLDRVHQRIVATLAAMPAAARGGEPTAFDTALSEAP"
     gene            456..1439
                     /locus_tag="VF308_03560"
     CDS             456..1439
                     /locus_tag="VF308_03560"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEX7435758.1"
                     /translation="MTPNRYSRITGTGGFLPPNRVSNDALVERLAADGIETSNRWIVE
                     RTGIHARHFAAPGVVCSDLAVEAARRALEAADCDVATIDLIIVATSTPDMVFPSTACI
                     VQQKLGVHGCPAFDVQAVCSGFVYALTIADSMIRTDAASKALVIGSEVFSRILDFKDR
                     TTCVLFGDGAGAVVLQASATPGLLASELHADGRHVDLLCVPGTVSGGVVLGDPLLKMD
                     GPGVFKLAVNVLEKVAQSVLIKAGRTASDIDWLIPHQANIRIMQSTAKKLKVPLEKVI
                     VTVSEHGNTSAASIPLALDEAVRSGRIARGETLLLEGVGGGFTWGAVLLDY"
     gene            1466..2401
                     /gene="fabD"
                     /locus_tag="VF308_03565"
     CDS             1466..2401
                     /gene="fabD"
                     /locus_tag="VF308_03565"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEX7435759.1"
                     /translation="MTTFAFVFPGQGSQAAGMLDAWGDSSVVRQTLAEASESLGEDIA
                     RLIHEGPKEQLDLTTNTQPVMLTAGVACYRAWMAETGLAPATLAGHSLGEYSALVAAG
                     SLRFADALPLVRFRAEAMQQAVPVGVGAMAAVLGMEAEAVRRGCAEVAAATGEVVEAV
                     NFNDPKQTVIAGTKAGVEKACEALKAAGAKRALPLPVSAPFHSSLMKPAAERLKERLA
                     ATPFAVPQIAVVNNVDVAVESEPEAIRDALYRQAFGAVRWVETVRAIRARGATHIFEC
                     GPGKVLVGMIKRIDSGAVAAAVFDPATLAEAKALL"
     gene            2413..>3130
                     /gene="fabG"
                     /locus_tag="VF308_03570"
     CDS             2413..>3130
                     /gene="fabG"
                     /locus_tag="VF308_03570"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEX7435760.1"
                     /translation="MAGQVALVTGASRGIGRAIAMALVAQGMTVIGTATTEAGAAAIG
                     EALAVSAGSRGVVLDVNDGPGLVATVDAVVKDHGGLHVLVNNAGITRDMLSMRMKDDD
                     WDAVLDTNLKAVFRLSRAAIRPMMKQRYGRIVNITSVVGASGNAGQANYAAAKAGVAG
                     MTRSLARELGSRGITVNCVAPGFIETDMTKDLSAAQSAALMAQIPLGRLGRASDVAEA
                     VAFLASPRAGYITGAELHVNG"
BASE COUNT          488 a         1083 c         1082 g          477 t
ORIGIN      
        1 ctcaacttcc atggcaacgt cgaaggcaac gacatcttca agggcacgac tgacatcgtc
       61 gtgtgcgacg gcttcgtcgg caatgtcgcg ctgaagaccg ccgaggggct ggcctcgatg
      121 ctctcgaact tcctgcgcca ggagttcacg cgcagcgtct tcacgcgtgt cgcggcgctg
      181 gcggcgctgc ccgtgctcaa ccgcttcaag gcccgcgtcg atcaccggcg ctacaacggc
      241 gcggcgctgc tcggcctgcg cgggctggtc ttcaagagcc atggctcggc cgacgcgttc
      301 gcgttcgagc aggcgctgaa tcgggcttat gatgcggcgc gacacggctt gctggacagg
      361 gtccaccaga ggatcgtcgc cacgctcgcc gcgatgccgg cggccgcccg aggcggcgag
      421 ccgacggcat tcgataccgc cctttccgaa gcaccgtgac tccgaatcgc tattcgcgca
      481 tcaccggcac cggcggcttc ctgccgccga accgggtgag caacgacgca cttgtcgagc
      541 gcctcgccgc cgacggcatc gagacctcga accggtggat cgtcgagcgc acgggcatcc
      601 atgcacgcca cttcgcggcg ccgggcgtgg tctgcagcga cctggcggtg gaagcggcgc
      661 ggcgcgccct cgaagcggcc gactgcgacg tggcgacgat cgacctgatc atcgtcgcga
      721 cctcgacgcc cgacatggtg ttcccgtcga cggcgtgcat cgtccagcaa aagctcggcg
      781 tccacggctg cccggcgttc gacgtgcagg cggtgtgctc gggcttcgtc tatgcgctca
      841 ccatcgccga ttccatgatc cgcaccgacg cggcgagcaa ggcgctggtg atcggctccg
      901 aggtgttctc ccgcatcctc gacttcaagg accggacgac ctgcgtgctc ttcggcgacg
      961 gcgccggcgc ggtcgtgctg caggcgagcg cgacgccggg cctgctcgcg agcgagctcc
     1021 atgccgacgg ccggcacgtc gacctgctct gcgtgccggg cacggtttcg ggtggcgtgg
     1081 tactcggcga tccgctgctg aagatggatg ggccgggtgt cttcaagctc gcggtcaacg
     1141 tgctcgagaa ggtggcgcag tcggtgctca tcaaggccgg ccgcaccgct tccgacatcg
     1201 actggctgat tccgcaccag gccaacatcc gcatcatgca gagcaccgcg aagaagctga
     1261 aggtcccgct cgagaaggtg atcgtcacgg tcagcgagca cggcaacacg tcggccgcgt
     1321 cgatcccgct cgcgctcgac gaagcggtgc gcagcggcag gatcgcgcgc ggcgagacgc
     1381 tgctgctcga aggcgtcggc ggcggcttca cctggggcgc ggtgctgctc gattactgag
     1441 ccaccgcagc acaggcaatt caacgatgac gacgttcgca ttcgtgtttc ccggccaggg
     1501 ttcgcaggcc gccggcatgc tcgacgcatg gggggactct tccgtggtgc ggcagacgct
     1561 cgccgaagcg tccgagtcgc tcggcgaaga catcgcgcgc ctgatccacg agggcccgaa
     1621 ggaacagctc gacctgacga cgaacaccca gccggtgatg ttgacggccg gcgtcgcctg
     1681 ctaccgcgcg tggatggccg aaaccggcct cgcgccagcg accctcgccg ggcactcgct
     1741 cggcgaatac agtgcgctcg tggccgcggg ctcgctgcga ttcgccgatg cgttgccgct
     1801 cgtgcgcttt cgcgccgagg cgatgcagca ggccgttccg gtgggcgtcg gcgccatggc
     1861 ggccgtcctc ggcatggagg ccgaggccgt ccgccgcggt tgcgccgagg tcgccgcggc
     1921 gaccggcgaa gtcgtcgaag cggtcaactt caacgacccg aaacagaccg tcatcgccgg
     1981 caccaaggcc ggcgtcgaga aggcttgcga agcgctcaag gcggccggcg cgaagcgcgc
     2041 tctcccgctc ccggtgtccg ccccgtttca ttcgagcctg atgaagccgg ccgccgaacg
     2101 cctgaaggaa cggctcgcgg cgacaccctt cgcggtgccg cagatcgcgg tcgtcaacaa
     2161 cgtcgacgtt gcggttgaaa gcgaacccga ggcgatccgc gacgcccttt accggcaagc
     2221 gttcggcgcg gtgcgctggg tcgaaaccgt gcgcgccatc agggcccgtg gcgcgaccca
     2281 cattttcgaa tgcggtcccg gcaaggtgct cgtcgggatg atcaaacgca tcgactcggg
     2341 ggcagttgcc gccgcggtct tcgacccggc cacgctcgcc gaagcgaagg cgttgctgtg
     2401 agcggtgtca cgatggccgg gcaggtcgcg ctcgtcaccg gcgcatcgcg cggcatcggc
     2461 cgcgcgatcg cgatggcgct ggtggcgcag ggaatgacgg tgatcgggac ggcgacgacc
     2521 gaagccggtg cggcggcgat cggcgaggcc ctcgccgttt ctgcgggcag ccgcggcgtg
     2581 gtgctcgacg tcaacgacgg ccccggcctg gtggccacgg tcgacgccgt cgtgaaggac
     2641 catggaggcc tgcacgtgct cgtcaacaac gccggcatca cgcgcgacat gctgtcgatg
     2701 cgcatgaagg acgatgactg ggacgccgtg ctcgacacca acctgaaggc ggtgtttcgc
     2761 ctgagccgcg cggcgatccg gccgatgatg aagcagcgct acggccgcat cgtcaacatc
     2821 acctcagtgg tcggcgcgag cggcaacgcg ggccaggcca actacgccgc ggccaaggcc
     2881 ggcgtcgccg gcatgacgcg ctcgcttgcg cgcgaactcg gcagccgcgg catcaccgtc
     2941 aactgcgtcg caccgggttt catcgagacc gacatgacca aggatctttc cgcagcgcag
     3001 agcgccgcgc tgatggcgca gatcccgctc ggccgtctcg gccgcgccag cgacgtcgcc
     3061 gaggcggtcg ccttcctcgc ctcgccgcgc gccggctaca tcaccggcgc cgaattgcat
     3121 gtcaatggcg
//
LOCUS       DASVHM010000180         1784 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_85238, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000180 DASVHM010000000
VERSION     DASVHM010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85238"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..1231
                     /locus_tag="VF308_03575"
     CDS             62..1231
                     /locus_tag="VF308_03575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435761.1"
                     /translation="MNAFGPSPARAAFAAIATAAALCAPAASFAADPVKIGYTGPLSG
                     SLSLLGQGVRDGIDVYVQYINDQGGVNGRKIELIAEDDGYEPMRTLAAAKKLSEQDKV
                     SALVSPAGTPNVTAMIGYSQERKMPIIAPYAFSHALTTPTKRYVFTTLPEVRLQADVL
                     GGYILNQLKQTKIAAIYQNDDFGQDAVAGLDERLKKSNIALIKLPFDRGSTNFSGVVA
                     QAREAGAEDVVFLGIPRDAALVMKEANKMGWKPQFSGHSALGDPQTFTLAGAPLVEGA
                     IAVAVMEPLDSKKPQVAEFIARQNKYLPKTSPTTYSMHGYNAARLFVEALKRLEGEPT
                     GDKIVAALESIKGLDTGLMGPITFSLEQHAGSQSVSFMRAKDGKWGIVTEWVKAN"
     gene            1213..>1784
                     /locus_tag="VF308_03580"
     CDS             1213..>1784
                     /locus_tag="VF308_03580"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HEX7435762.1"
                     /translation="MGQGQLTADKRTTLGEALGAVRDGHRVALGGMTLYRRPVAAALA
                     LAAAGRKSLEIVTLTGGIETDLLIGAGCVRKLRSCYTGLEVVGFAPHFTRRVQEGTLD
                     LVEETEYTLSYAVQAATMRVPFLPMRGDLARTDILRVRPDLKTFACPLTGATLIAVPA
                     LPLDIAILHATAADHHGNCNLQGQLALDPHL"
BASE COUNT          324 a          627 c          578 g          255 t
ORIGIN      
        1 cgtctccatc cttcggccac gcggtcttcg ctgtccgctg ttacacctca ggagacgaca
       61 catgaatgcc ttcggaccct caccggcgcg cgccgccttt gccgcaatcg ccaccgccgc
      121 cgcgctctgc gcgcctgccg cttcgtttgc ggcagacccg gtgaaaatcg gctacaccgg
      181 gccgctgtcg ggctcgctct cgctgctcgg ccagggcgtg cgcgacggca tcgatgtata
      241 cgtccagtac atcaacgacc aaggaggcgt gaacggacgc aagatcgagc tcatcgccga
      301 ggacgacgga tacgagccga tgcgcacgct cgccgccgcg aagaagctct cggagcagga
      361 caaggtgagc gcgctggtct cgcccgccgg cacgccgaac gtcacggcga tgatcggcta
      421 ctcgcaggag cgcaagatgc cgatcatcgc gccctacgcc ttcagccacg cgctgacgac
      481 cccgaccaag cgctacgtct tcacgacgct gcccgaggtg cgcctgcagg ccgacgttct
      541 gggcggatac atcctcaacc agctgaagca gacgaagatc gccgcgatct accagaacga
      601 cgacttcggc caggacgccg tcgcgggcct cgacgagcga ctgaagaaat ccaacatcgc
      661 gctgatcaag ctgccgttcg atcgcggctc gaccaacttc agcggcgtgg tcgcgcaggc
      721 gcgagaggcc ggcgccgaag acgtggtctt cctcggcatt ccgcgtgacg cggcgctggt
      781 catgaaagag gccaacaaga tgggctggaa gccgcagttc agcggtcaca gcgcgctcgg
      841 cgatccgcag accttcacgc ttgccggcgc gccgttggtc gagggcgcga tcgcggtcgc
      901 ggtgatggaa ccgctcgact cgaagaagcc gcaggtggcc gagttcatcg cgcgccagaa
      961 caagtacctg ccgaagacca gcccgacgac ctacagcatg cacggctaca acgctgcgcg
     1021 cttgttcgtc gaagcgctga agcgcctcga gggcgagccc accggagaca agatcgtcgc
     1081 cgcgctcgag agcatcaagg gcctcgacac cgggctgatg gggccgatca cgttctcgct
     1141 cgaacagcac gcgggcagcc agtccgtcag cttcatgcgc gcgaaagacg gcaaatgggg
     1201 catcgtcacc gaatgggtca aggccaactg acggcagaca aacgcacgac gcttggcgag
     1261 gcgctcggcg cggtgcgcga cggccaccgc gtcgcgctcg gcggcatgac gctgtaccga
     1321 cggccggtgg ccgctgcgct cgcgctcgcg gcggccggcc gcaagagtct cgaaatcgtc
     1381 acgctgaccg gcggcatcga gacagacctg ctgatcggcg ccggctgcgt gcgcaagctg
     1441 cgcagttgct acacggggct cgaagtcgtc ggcttcgccc cgcacttcac gcggcgcgtg
     1501 caggaaggca cgctcgacct cgtcgaggag accgaataca cgctgagcta cgcggtgcag
     1561 gcggcgacga tgcgcgtgcc gttcctgccg atgcgcggcg acctggcgcg caccgacatc
     1621 ctccgcgtcc ggcctgactt gaagaccttc gcgtgcccgc tgaccggagc gacgctgatc
     1681 gcggtgccgg cgctgccgct cgacatcgcg atcctgcacg cgaccgccgc cgaccaccac
     1741 ggcaactgca atctgcaggg ccagctcgcg ctcgatccgc acct
//
LOCUS       DASVHM010000181         3782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_445165, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000181 DASVHM010000000
VERSION     DASVHM010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3782
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445165"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1117)
                     /locus_tag="VF308_03585"
     CDS             complement(<1..1117)
                     /locus_tag="VF308_03585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830091.1"
                     /note="sensory histidine kinase in two-component
                     regulatory system with KdpE; signal sensing protein;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     KdbD"
                     /protein_id="HEX7435763.1"
                     /translation="MNEALRRDPDAIIERIRQEEQRASRGRLRIYFGSSAGVGKTYAM
                     LIAARALKSAGTDVVAGVIETHGRDDTAAQQAGLEILSRRSFALPGMPQLTEFDLDAA
                     LARKPALILVDELAHSNVAGSRHPKRWQDVDELLSAGIDVWTTLNVQHLESLNDVVGG
                     ITGVRVQETLPDTFFDRADEIVLVDTPADELLARLKAGKVYGEVQAERAAANFFRKGN
                     LMALRELALRRTADRVEDDVQTYRSDRSIDRIWKTESAILCCIGPSGGAEQVVRSAAL
                     LAQQLAVSWHAVYVETPALQRLPEARRQRILAAVKLAEDLGATTTVLPGGQVATAVID
                     YARENNLSKLVMGHNRASLWRPAGTLAQQLGRLAADVD"
     gene            complement(1114..1605)
                     /locus_tag="VF308_03590"
     CDS             complement(1114..1605)
                     /locus_tag="VF308_03590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEX7435764.1"
                     /translation="MNRLASVLDVEDVRVDVVARSKLALFVEAAMIFKRHGWIVAPST
                     VTDALIAREQLASTCLGHGVAIPHTRLKGLKTAVAAVIRLKEPLAFDGPDDEPVTLFV
                     FLFVPEMATQSDLEILAEIAEMLSDKAVRERLKHDGDADFVYATIAGWMPLGATGPPA
                     SRS"
     gene            complement(1640..2212)
                     /gene="kdpC"
                     /locus_tag="VF308_03595"
     CDS             complement(1640..2212)
                     /gene="kdpC"
                     /locus_tag="VF308_03595"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007865708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HEX7435765.1"
                     /translation="MNSTLRPALVLFLVLSLVTGIAYPFLVSGVANVAMPFQAGGSIV
                     QRDGKAVGSLLIGQSFSDPKHFWSRPSATSPGPNNAANSGGSNQGPSNPALAEAVKGR
                     IDALRAADPDNKAPVPVDLVTASGSGLDPEISVAAAQYQAGRIARARGIPLERVNALI
                     SEHTKGQVLGFLGEPRVNVLELNLALDSIR"
     gene            complement(2229..>3782)
                     /gene="kdpB"
                     /locus_tag="VF308_03600"
     CDS             complement(2229..>3782)
                     /gene="kdpB"
                     /locus_tag="VF308_03600"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008452178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HEX7435766.1"
                     /translation="GGTKVLSDHIKVRITSNPGETFLDRMIALVEGAVRQKTPNEIAL
                     NILLVALTIVFLVVVVTLLPMSIFSVDVAKVGTAVTVTTLVALLVCLIPTTIGALLSA
                     IGVAGMSRMMQANVIATSGRAVEAAGDVDVLLMDKTGTITLGNRQASAFFAAPGFTEA
                     QLADAAQLASLADETPEGRSITVLAKQKFNLRERDMASLGATFIKFTAQTRMSGVNLG
                     ATENQAERKIRKGAADAIRVYVESLGGTFPQLLTTKIEEVARRGSTPLVVSDGSKVLG
                     AIELKDIVKGGIKERFAELRRMGIKTIMITGDNRLTAAAIAAEAGVDDFLAEATPEAK
                     LKLIREYQSEGRLVAMTGDGTNDAPALAQADVAVAMNTGTQAAKEAGNMVDLDSNPTK
                     LLEVVETGKQLLMTRGSLTTFSIANDVAKYFAIIPAAFATTYPQLAALDVMRLASPSS
                     AILSAVIFNALVIVFLIPLALKGVKYRPAPAVELLRRNVLIYGLGGLIVPFIGIKLID
                     LLLSAAHLA"
BASE COUNT          583 a         1221 c         1338 g          640 t
ORIGIN      
        1 agtccacgtc ggcggcgagc ctgccgagct gctgggccag cgtcccggcc ggtcgccaga
       61 ggctcgcccg gttgtgaccc atgacgagct tggacaggtt gttctcgcgg gcgtagtcga
      121 tgacggccgt cgcgacctga ccgcccggca ggacggtcgt cgtcgcgccg aggtcctcgg
      181 cgagcttgac cgccgcgaga atgcgctggc ggcgagcttc cgggaggcgc tgcagtgccg
      241 gcgtctccac gtagacggcg tgccaggaga cggccagctg ctgggcgagc aaggcggcgc
      301 ttctcacgac ttgctcggcg ccgccgctcg ggccgatgca gcacaggatc gccgactccg
      361 tcttccagat gcgatcgatc gagcggtcgc tgcgataggt ctggacatcg tcctcgacgc
      421 gatcggcggt gcggcgcagc gcaagctcgc gcagcgccat caggttgccc ttcctgaaga
      481 agttcgccgc cgcgcgctcg gcctggacct cgccgtacac cttgcccgcc ttcagacgcg
      541 ccagcagctc gtcggcgggg gtgtcgacca ggacgatctc gtcggcgcgg tcgaagaagg
      601 tgtcgggcag cgtctcctgg acacggacgc cggtgatgcc gccgacgacg tcgttgaggc
      661 tttccaggtg ctggacattg agcgtcgtcc agacatcgat gccggcggac aggagctcgt
      721 cgacgtcttg ccaccgcttg ggatggcgcg atcccgcgac gttcgaatgg gccagttcgt
      781 cgaccaggat caacgccggc ttcctcgcga gcgcggcgtc gagatcgaat tcggtcagct
      841 gcggcatgcc gggcaaggcg aacgaccgcc tggacaagat ctccagaccc gcctgttggg
      901 ccgcggtgtc gtcacgcccg tgcgtttcga tgacgcccgc gacgacgtcg gttccggcgc
      961 tcttcagggc tcgggccgcg atgagcatcg cgtaggtctt gccgacgccg gcagaggagc
     1021 cgaagtagat cctgagccgg ccgcggctgg cgcgctgttc ctcctgccgg atccgttcga
     1081 tgatcgcgtc cggatcgcgg cgaagggctt cgttcatgat cggctggcgg ggggtccggt
     1141 ggcgccgagc ggcatccagc ctgcaatggt ggcatagacg aagtcggcgt cgccgtcgtg
     1201 cttgagccgc tccctgaccg ccttgtcgga gagcatttcc gcgatttccg ccaggatttc
     1261 gaggtcgctc tgcgtcgcca tctccggaac gaacaggaag acgaagagcg tcaccggttc
     1321 gtcgtcgggc ccatcgaagg ccagtggctc cttcaatcgg atcactgccg cgacggcggt
     1381 cttcaggccc ttgaggcggg tgtgcgggat cgcgacaccg tgcccgaggc aagtgctcgc
     1441 cagctgctcc cgggcgatca gcgcgtcggt gacggtcgac ggggcgacga tccagccatg
     1501 ccgcttgaag atcatggccg cctcgacgaa cagcgccagc ttgctcctgg cgacgacgtc
     1561 gaccctgaca tcctcgacgt ccagaacgga ggcgaggcgg ttcaagggtc gacctcgcct
     1621 gtcggaagtc gtcgacgcgt cagcggatcg aatccagcgc caggttgagc tccaggacgt
     1681 tgacgcgcgg ctcgccgagg aagccgagga cttggccctt cgtgtgttcg gagatgagtg
     1741 cattcacgcg ctccagcgga ataccgcgcg cgcgggcgat ccggcccgcc tggtactgcg
     1801 cggcggcgac gctgatctcg gggtcgaggc cgctccccga cgccgtcacc agatcgaccg
     1861 gcaccggcgc cttgttgtcc ggatcggcgg cacggagggc gtcgatgcgg cccttgaccg
     1921 cttcggcgag ggccgggttg gacggccctt ggttggatcc gcccgagttg gccgcgttgt
     1981 tcgggccggg cgaggtcgcc gacggccgac tccagaagtg cttcgggtcg ctgaagctct
     2041 gcccgatcag gagcgagccc acggccttgc cgtcgcgttg aacgatgctg ccgcccgcct
     2101 ggaaaggcat ggcgacgttg gcgacgccgc tgacaagaaa cggataggcg atgccggtga
     2161 cgagcgacag caccaggaac aggaccaggg cggggcgaag ggtggaattc atgtgcattc
     2221 cttgtcgctc aggcgaggtg agccgccgag agcagaagat cgatgagctt gatgccgatg
     2281 aagggcacga tgagtccgcc caggccatag atgaggacgt tgcgcctgag cagctccacg
     2341 gccggcgcgg gccggtactt cacgcccttg agggccagcg gaatcaggaa gacgatgacg
     2401 agcgcgttga agatcacggc cgacaggatc gccgacgacg ggctcgcgag acgcatgacg
     2461 tcgagcgcgg cgagctgggg gtaggtcgtc gcgaacgccg ccgggatgat cgcgaagtac
     2521 ttggcaacgt cgttggcgat cgagaatgtc gtgagggacc cgcgcgtcat cagcaattgc
     2581 ttcccggtct cgacgacctc gagcaacttg gtcgggttcg agtcgaggtc gaccatgttg
     2641 ccggcctcct tcgcggcctg cgtgccggtg ttcatggcga cggcgacgtc ggcctgcgcc
     2701 agcgccggcg cgtcgttggt gccgtcgccg gtcatcgcga cgagccgccc ttcgctctgg
     2761 tactcgcgga tcagcttcag cttggcctcc ggcgtcgctt cggcgaggaa gtcgtcgacg
     2821 ccggcctcgg cggcgatagc cgcggcagtg aggcggttgt cgccggtgat catgatcgtc
     2881 ttgatgccca tccggcgcag ctcggcgaag cgctccttga tgccgccctt gacgatgtcc
     2941 ttgagctcga tggcgccgag caccttgctg ccgtccgaaa ccacgagcgg cgtgctgccg
     3001 cgccgcgcca cttcctcgat cttcgtcgtc agcagctgag ggaacgtgcc gcccagggac
     3061 tcgacataga cgcggatcgc gtcggcggcg cccttcctga tcttgcgctc ggcctggttc
     3121 tcggtggcgc cgaggttgac gccgctcatc cgcgtctgcg cggtgaactt gatgaaggtc
     3181 gcgccgagcg acgccatgtc gcgctcgcgc aggttgaact tctgcttggc gaggacggtg
     3241 atgcttcggc cctcgggcgt ctcgtcggcg agcgaggcga gctgcgcggc gtcggcaagc
     3301 tgcgcctcgg taaagccggg cgccgcgaag aaggccgacg cctgccggtt gccgagcgtg
     3361 atggtcccgg tcttgtccat cagcagcacg tcgacgtcgc ccgcggcctc gaccgcgcgg
     3421 cccgaggtgg cgatcacgtt ggcctgcatc atccggctca tgccggcgac gccgatcgcc
     3481 gacagcaggg cgccgatcgt cgtcgggatc aggcagacca gcagcgcgac gagcgtcgtc
     3541 accgtcaccg ccgtgcccac cttggcgaca tcgacgctga agatcgacat cggcaggagc
     3601 gtcacgacga cgacgaggaa gacgatcgtc agcgcgacga gcaggatgtt gagggcgatc
     3661 tcgttgggcg tcttctgccg aactgcgccc tccacgaggg cgatcatgcg gtcgaggaaa
     3721 gtttcacccg gattcgaagt gatccgcact ttgatgtggt cagacaagac ctttgtgccg
     3781 cc
//
LOCUS       DASVHM010000182         5101 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_12311, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000182 DASVHM010000000
VERSION     DASVHM010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5101
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12311"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..953
                     /gene="flgL"
                     /locus_tag="VF308_03605"
     CDS             <1..953
                     /gene="flgL"
                     /locus_tag="VF308_03605"
                     /inference="COORDINATES: protein motif:HMM:TIGR02550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HEX7435767.1"
                     /translation="AGDLLQQAREALVAAGNASYNDAQRKTVADQLKSIRDQLLEVAN
                     RGDGTGSYLFAGQGATQKPFVDAPGRVQFAATAGQLSTDKTTALPLTTDGSATWLSAP
                     TGNGVFETRAGAGVTTATIDNGQVSNPSLLTGANYTVQFSVSAGTTTYAVLQNGLPTA
                     VTNAPYVSGQSINVDGMSFSVSGAPANGDQFQIVPSTPTLSVFDTLDKAVADLATPGR
                     TGSQIAQSNADSLRNVDSVMGTMQAGRSLAGAVLNRIDHETDRLASQKLTSQTEQSAA
                     VDIDMVQAVSSFQTKQSGYDAALKSYSMVQRLSLFQYLGG"
     gene            986..2188
                     /locus_tag="VF308_03610"
     CDS             986..2188
                     /locus_tag="VF308_03610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HEX7435768.1"
                     /translation="MLDVAILGQVALGYSPFIDRNRSVSATRLTVFPLRPDAVLDVAQ
                     LLHAVGGVWPASGGKVSLNVVSESLLQDLLRAQPSSNLMVEVPAFMASDPANIASLKS
                     LAANGNTLLIKGRPVQELPREVLPCFKYSIIDVADERRTDAAAPAGVTRTIGHVQSGV
                     RTMAEMEAAFGRGAQAVLGWPIDDVVSTTVARGGRSTVQPDLQVIVELIRRVDAEDSI
                     DKLEQTLRRDPSLAFKLLRYINSPAFGLRVEISSFSHAIMMLGYQRLKRWLALLLATA
                     SKEVNLRPIMFAAVRRGLLMEELVRGSGDEELRNEVFICGVFSLLDRMFQQPFKQLLS
                     SIPVPTRVYQALVEDTGPYQPYIEMVRAVESESLFDFRETAEKLLMSVSEINRAQLRA
                     LMAASELE"
     gene            2240..>5101
                     /locus_tag="VF308_03615"
     CDS             2240..>5101
                     /locus_tag="VF308_03615"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEX7435769.1"
                     /translation="MTPPESWSSAKAWREFFDALSDAVLVLDTRARVVFANTAALRLL
                     PCDVGTPLQQLEATLGAAAVRWLVRAASSQPDATAPPLIVLADGRPATFVWRRLDAKH
                     SALRLHPDPGPQPAVLPVLPQAGDSAAMRETIRLFWDSPFPFTLQGSDFLLIDVNPAF
                     VEFSGYPRERLIGRDPLDLVPEEDRRASAENRRALQGSFGRTDLPALSEGRLIDAGGR
                     ERSFRIARRILVGEDGQAAHLALLQDTTAERVARERADRSVRELDDWFDLSPVGMVLF
                     DHSGLLVRTNPAFDALVRRVPVQLKDAPSSLQQLLAWDGEAPLAQLQPGSAPLECQGW
                     IGPPGGEMRRLRGVVRCYKTAGGQRRYMAVVEDRSIEEERDLAQMQIGALMDTAGVGL
                     ATFQESSGWVRQRQQGAAAGGSAAPASASSAALQSISRDMVAPESLAEYEKLQTALRH
                     AQRAEVRYAIDHAELGRRWLLTRVEPATLASGKRTTSVVTLDITEQHRSQQKSEQLLR
                     EMTTILESTTAGIAYLRGDLLVRCNHRFETMLGLEAGARPGSTVAELFGRHAEAGRIG
                     LDSLRTLAAGAVYETEFEAADPGGGDEKRWYSLSVRRAAAGSEPPESIAVLSDVTRMK
                     TQQVELEILARDRELMFSLSEVGIVFVRDRRIQRANEAMAELTGWSVEDLSSLELATL
                     FVDAGDFKRRWAQEERDLRLHGRWSGERQLRHRDGRLIWVQVSKRIVNRAHPTGGIIA
                     SYVDVDARHRAERAVSLQAERTRSILDSVLVGIVNVGPLGIEWMNRSARRMFGGSLAD
                     FVGEPISTVATPEPDHPFRRTQYLDDLVEGRAETFECRVRARDGREFWIVGNVVATDR
                     DTTGRQLTYALLDIERRRQAEARMSEAQSALQQVIEAAPLAIAVIEARTLKIVQVNAV
                     AAEAMGSTAERLIGSTPEQILAPGAAAEGRRDMEAALATA"
BASE COUNT          789 a         1753 c         1764 g          795 t
ORIGIN      
        1 atgccggtga cctgctgcag caggcgcgcg aggcgctcgt cgcggccggc aatgcgagct
       61 acaacgatgc gcagcgcaag acggtggccg accagctcaa atcgatccgc gaccagttgc
      121 tcgaggtcgc gaaccgcggc gacggcacgg gcagctatct gttcgcgggc cagggtgcaa
      181 cgcaaaagcc cttcgtcgat gccccgggca gggtgcagtt cgccgcgacc gcgggccagt
      241 tgagcaccga caagaccacg gccctgccgc tcaccaccga cggctcggcg acctggcttt
      301 ccgcgccgac cggcaacggc gtgttcgaga cacgcgccgg cgccggcgtg acgaccgcga
      361 cgatcgacaa cggccaggtc tcgaatccct cgctgttgac cggggccaac tacaccgtgc
      421 agttcagcgt cagcgccggg acgacgacct acgcggtgct gcagaacggc ttgccgaccg
      481 cagtgacgaa cgcgccctac gtgtcgggcc agtcgatcaa cgtcgatggc atgagcttca
      541 gcgtcagcgg cgcgcccgcc aacggcgacc agttccagat cgtgccgtcg acgccgaccc
      601 tgagcgtctt cgacacgctc gacaaggcgg tggccgacct ggcgacgccg ggccgcaccg
      661 gatcccagat cgcccagtcg aacgccgaca gcctgcgcaa cgtcgattcg gtgatgggca
      721 cgatgcaggc ggggcgctcg ctcgcggggg cagtgctcaa ccgcatcgac cacgagaccg
      781 atcggctcgc ttcccagaag ctgacgagcc agaccgagca atctgccgca gtcgacatcg
      841 acatggtgca agcggtttcc agcttccaga ccaagcaaag cggctacgat gcggcattga
      901 agtcgtattc gatggtgcag cgtctgtcgc tgttccagta cctcggcggc tagcagcctg
      961 ctgaaccatt cttcgggaat tccacgtgct ggatgtcgcg atcctcggcc aggttgccct
     1021 gggttattcc ccgttcatcg atcgcaaccg cagcgtctcg gcaacccgtc tcacggtctt
     1081 tccgctgcgt cccgacgccg tgctcgatgt cgcgcagctg ctgcacgcgg tcggcggagt
     1141 ctggccggcg agcggcggga aagtgtcgct caacgtcgtc agcgaaagcc tgctgcagga
     1201 tctgctgcgg gcgcagccgt cgtcgaatct gatggtcgaa gtgccggcgt tcatggcgtc
     1261 cgaccccgcc aacatcgcgt cgttgaagag tcttgccgcg aatggcaaca cgcttctcat
     1321 caagggcagg cccgtgcagg aactgccgcg cgaggttctg ccttgcttca agtattcgat
     1381 catcgacgtg gccgacgagc gccgcaccga cgccgcggcc ccggccggcg tgacgcggac
     1441 gatcgggcac gtgcagtcgg gcgtgcgcac gatggccgag atggaggcgg ccttcggccg
     1501 cggcgcccaa gccgtgctcg gctggccgat cgacgacgtg gtcagcacca ccgtggcgcg
     1561 cggcggccgt tcgaccgtgc agccggatct gcaggtgatc gtcgaactca ttcgccgcgt
     1621 cgacgccgaa gactcgatcg acaagctcga gcagaccttg cggcgcgatc cgtcgctggc
     1681 gttcaagctg ctgcgctaca tcaattcgcc ggcgttcggc ctgcgcgtcg agatcagctc
     1741 gttcagccac gcgatcatga tgctcggcta ccagcgcctc aaacgctggc tcgcgctgct
     1801 tctcgcgacg gcgagcaagg aagtgaacct gagacccatc atgttcgccg ccgtgcggcg
     1861 cggcctcttg atggaagagc tcgtgcgcgg cagcggcgac gaggaactgc gcaacgaggt
     1921 gttcatctgc ggcgtcttct cgctgctcga tcgcatgttc cagcagccgt tcaagcagtt
     1981 gctcagctcg attccggttc ccacacgcgt ctaccaggcg ctggtcgagg acaccggtcc
     2041 ctatcagcct tacatcgaga tggtccgggc ggtcgagagc gaatcgctgt tcgatttccg
     2101 cgagacggcc gagaagctcc tgatgagcgt gagcgagatc aatcgggccc agttgcgggc
     2161 gctgatggcg gccagcgagc tcgagtgact tgccggcagt gtccggcgtg ggcagccatt
     2221 tggcgttgac aggccccgga tgacgccgcc cgaatcctgg tcgagcgcca aggcctggcg
     2281 cgagttcttc gacgccctgt ccgatgcggt gctggtgctc gatacgcgcg cccgcgtcgt
     2341 cttcgcgaac accgcggcgt tgcgcctctt gccctgcgac gtgggcacgc ccctgcagca
     2401 gctcgaggcg acgctcggcg cggcagccgt gcgctggctc gtgcgcgccg cgagtagcca
     2461 gccggatgcg acggcaccac ccctgatcgt cctcgccgac gggcgccccg cgacgttcgt
     2521 ctggcgccgt ctggacgcga agcattccgc actgcggctg catcccgacc ccggcccgca
     2581 gcccgccgtg ctgccggtgc tcccgcaggc gggcgacagt gcggcgatgc gcgagacgat
     2641 ccgcctcttc tgggactcgc cgtttccgtt cacgctgcag ggcagcgact tcctgctcat
     2701 cgacgtcaat ccggctttcg tcgaattcag cggctacccg cgcgagcggc tgatcggccg
     2761 cgacccgctc gacctcgtgc ccgaggaaga ccgccgcgcc agcgcggaga accggcgcgc
     2821 cttgcaaggc agcttcggcc gcaccgacct gcccgcgttg tccgaggggc gcctcatcga
     2881 cgcgggcggg cgcgagcgct cgtttcgcat cgcgcggcgt atcctggtcg gcgaagacgg
     2941 gcaggcggcg catctcgccc tgctgcagga cacgacggcc gagcgcgtcg cgcgcgaacg
     3001 ggccgatcgc tcggtgcgcg agctcgacga ctggttcgat ctcagccccg tcggcatggt
     3061 cctgttcgat cacagcggcc tgctcgtgcg caccaatccc gccttcgatg cgctggtcag
     3121 gcgcgtcccg gtgcagctga aggacgcgcc gtccagcctg cagcagttgc tggcgtggga
     3181 cggcgaggcg ccgcttgcgc aactgcagcc cggttcggcg ccgctcgagt gccagggctg
     3241 gatcggcccg cccggcggcg agatgcggcg cctgcgcggc gtcgtgcgct gctacaagac
     3301 ggccggcggg caacgccgct acatggccgt ggtcgaggat cgaagcatcg aggaagagcg
     3361 cgatctggcg cagatgcaga tcggtgcgct gatggacacc gccggtgtcg gcctcgcgac
     3421 tttccaggaa tcttcgggtt gggtccggca acgccagcag ggtgcggcgg cgggcggatc
     3481 cgcggcaccg gcctcggcct cgtcggcagc cctgcagagc atcagccgcg atatggtcgc
     3541 gcccgagtcg ctcgccgaat atgagaagtt gcagaccgcg ttgcgccacg cccagcgtgc
     3601 cgaggtgcgc tatgcgatcg atcatgccga gctcggccgg cgctggctcc tcacgcgggt
     3661 cgagccggcg acgctcgcct cgggcaagcg gacgacctcg gtcgtcacgc tcgacatcac
     3721 cgagcagcat cgcagccagc aaaagagcga gcagctgctg cgcgagatga cgacgatcct
     3781 cgagagcacc accgccggca tcgcctacct gcgcggcgat ctgctggtgc gctgcaacca
     3841 ccgcttcgag accatgctcg ggctcgaggc gggagcgcgt ccgggcagca ccgtcgctga
     3901 actgttcggg cgtcatgccg aggccggccg gatcggcctg gacagcttgc ggacgcttgc
     3961 cgcgggcgcg gtatacgaga cagaattcga ggccgccgat ccgggcggcg gcgacgagaa
     4021 gcgctggtat tcgctttcgg tgcgccgcgc cgcggccggg tcggagccgc ccgagtcgat
     4081 cgcggtgctt tccgacgtga cgcgcatgaa gacgcagcag gtcgagctcg agatcctggc
     4141 gcgcgaccgc gagctgatgt tcagcctgtc cgaggtcggc atcgtcttcg tgcgcgaccg
     4201 ccgcatccag cgcgcgaacg aggcgatggc cgagctcacc ggctggtcgg tcgaagacct
     4261 gtcgtcgctc gaactggcga ccctgttcgt cgacgcgggc gacttcaagc ggcgctgggc
     4321 ccaggaggag cgcgacctgc gcctgcacgg ccgctggagc ggcgagcgcc agctgcgcca
     4381 ccgcgacggc cgcctcatct gggtgcaggt cagcaaacgc atcgtcaatc gggcgcatcc
     4441 gacgggcggc atcatcgcct cgtatgtcga tgtcgatgcg cgccatcgcg ccgagcgcgc
     4501 ggtctcgctg caggccgagc gtacgcgctc gatcctcgat tcggtgctgg tcgggatcgt
     4561 caacgtcggg ccgctcggca tcgagtggat gaaccggtcc gcgcgccgca tgttcggcgg
     4621 tagcctggcc gacttcgtcg gcgaaccgat ctcgaccgtc gcgacgccgg agcccgatca
     4681 tccgtttcgc cggacgcagt atctcgacga cctggtcgag gggcgggccg agaccttcga
     4741 gtgccgcgtg cgcgctcgcg acgggcgcga gttctggatc gtcggcaacg tggtcgcgac
     4801 cgatcgcgac acgaccgggc gccagcttac ctacgcgctg ctcgatatcg agcgccggcg
     4861 ccaggccgag gcgcggatgt cggaggccca gtcggccctg cagcaggtga tcgaggcggc
     4921 gccgctcgcg atcgcggtga tcgaggcgcg caccctgaag atcgtccagg tcaacgccgt
     4981 cgcagccgag gccatggggt ccacggcgga gcggctgatc ggcagcacgc ccgagcagat
     5041 tctcgcgcct ggcgcggccg cggaagggcg tcgcgacatg gaagcggcgc tggcaaccgc
     5101 g
//
LOCUS       DASVHM010000183        10949 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_373889, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000183 DASVHM010000000
VERSION     DASVHM010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 10949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10949
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373889"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..195)
                     /locus_tag="VF308_03620"
                     /pseudo
     CDS             complement(1..195)
                     /locus_tag="VF308_03620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558042.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(388..463)
                     /locus_tag="VF308_03625"
     tRNA            complement(388..463)
                     /locus_tag="VF308_03625"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(428..430),aa:Arg,seq:ccg)
     gene            609..1499
                     /locus_tag="VF308_03630"
     CDS             609..1499
                     /locus_tag="VF308_03630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011793569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEX7435770.1"
                     /translation="MTDAPESQEHDDSHEGPIRTPKQLILAVLWAHILPIGGILLLVA
                     FVTTHNRPSAGSDALAAPAVAKRIQPVGHVELRDTSDVASLKTGEQVFAAQCTACHTA
                     GVAGAPKFGDAAAWAPRIATGYDALLHSALAGKGAMTPQGGGDFSDLEVGRAVVYMAD
                     KAGAKFEEPKAPPATPASAKVDQGGDAAAAAGPSAQAAMATATTSAKTAPAAPEAAHG
                     AAVPALYTQICQACHAAGVAGAPKLGDKAAWAPRLAQGIDGLTASAIKGKGAMPPKGG
                     SAANDADIKAVVTYMANTAK"
     gene            complement(1522..2076)
                     /locus_tag="VF308_03635"
     CDS             complement(1522..2076)
                     /locus_tag="VF308_03635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2946 family protein"
                     /protein_id="HEX7435771.1"
                     /translation="MDEMVKAALKKWPNVPHCYGWLALDARGDWYMRDDRTQAAGPFP
                     KIKGSRILHEKLRDFIERNYASDEDGCWYFQNGPQRVYVELEAAPWIWRLQAGPGADP
                     GIVSHTGAPARFESAWLDGAGRLFVATDIGLGLVHTLDMETAAAAVEAGRWRPTETSF
                     EALVQRFGYRLRPTPIEGLVMPKA"
     gene            complement(2091..3056)
                     /locus_tag="VF308_03640"
     CDS             complement(2091..3056)
                     /locus_tag="VF308_03640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX7435772.1"
                     /translation="MDDYRAPPWLAGGNTQTIWPALVARSYTGAQPAFRRERWPTSDG
                     DFIDVDWQGEDTALPLLVLFHGLEGSSASHYALAFADWARRHGWRFAVPHFRGCSGEL
                     NLAPRAYHSGDFEEVGWILRRMRLLHAGPIVAVGVSLGGNALLRWAEEAGTTAAECVR
                     AVAAVSSPLDLAAGGRAIGSGFNRLVYTRMFLRTMKPKALAKLAQHPGLFDRERLLAA
                     RDLYAFDNAFTAPLHGFRDTEDYWSRGSAKPHLHRIRIPALVVNALNDPFVPASSLPA
                     AHEVGPHVTLWQPAHGGHVGFPGGGWPGHVRTMPARVMDWIGQRL"
     gene            complement(3065..3529)
                     /locus_tag="VF308_03645"
     CDS             complement(3065..3529)
                     /locus_tag="VF308_03645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX7435773.1"
                     /translation="MTAQIAVARPKAPPSPPSSPDEIELQFYEALQRGDIERLMAVWS
                     DDDDISCVHPGAPRLVGAAAIRASFDAMFGQGAIDAHPERVRRLRSHSCAVHSVLERV
                     RVLAADGPQSAWVVATNVYLKTAEGWRLVAHHASPGMPGAVQVLVEAASVLH"
     gene            complement(3526..4410)
                     /gene="purU"
                     /locus_tag="VF308_03650"
     CDS             complement(3526..4410)
                     /gene="purU"
                     /locus_tag="VF308_03650"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013122224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEX7435774.1"
                     /translation="MPRPPEFVLTLSCHDTRGIVHAVSAVLFHAGCNIVDSQQFGDVS
                     SPDSTGLFFMRVHFEAPEALADPGRLDALFDAVRAQFGMDAHLHAVARKPRLMLMVSK
                     HGHCLNDLLFRWHSGQLKVDVRGVVSNHPDFAALAASFGLAFHHVPLPSGSSPEAKRA
                     QELRIEKLLQDEQVDLVVLARYMQILSADFCRFLKGRAINIHHSFLPSFKGARPYEQA
                     HDRGVKLIGATAHYVTAELDEGPIIEQDVARVDHALDPEDIAAVGRDVESVVLARAVR
                     WHVEHRVLMNGHKTVVFK"
     gene            4496..5152
                     /locus_tag="VF308_03655"
     CDS             4496..5152
                     /locus_tag="VF308_03655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX7435775.1"
                     /translation="MKRPSVPGQTLEWTERSHDLSRLLARASLGDRAAFATLYERTSP
                     HLFAVVLRINRDRAQAEDILQEVYVNVWRAAKSFDAAQSQPLTWLTSIARNRAIDSLR
                     RGQTRPQIQTFGASEGATDAEDDSVYDTVADAAPGPLELLSQASEARALGGCMERLGA
                     LQRQSVALAFYHGLSHAEVAEQMRQPLGTVKSWVRRALIILKDCLQGATQRDGAERST
                     "
     gene            5152..5847
                     /locus_tag="VF308_03660"
     CDS             5152..5847
                     /locus_tag="VF308_03660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HEX7435776.1"
                     /translation="MDYGRSDLADRLAAAYVTGTLRGAARRRFEALLPAHVRLREATW
                     AWQERLMPLTTVLPPEQAPARVWTRILARIDGEGAAAPRPGIGSKLAFWRGLTAFAGV
                     AALTLALLLASPTPVQPPIVVVLSGTGAGADGVTAASFVASISGDGRALVTKPLVNVG
                     LQADHALELWAVAKGGAPRSLGLISASGATVVTKGKVLEGAEALAVSLEPPGGSPTGA
                     PTGPVLYAGKLAL"
     gene            complement(5823..6839)
                     /gene="waaF"
                     /locus_tag="VF308_03665"
     CDS             complement(5823..6839)
                     /gene="waaF"
                     /locus_tag="VF308_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEX7435777.1"
                     /translation="MTRSLVIAPQWIGDAVMSEPLLARLAGRGERVAVAALPWVAPVY
                     RAMAQVAEVIELPFAHGRLDWARRWRVAAALRGRFDVAYVLPNSFKSALVPWLAGIPK
                     RIGYRGEGRFVLLDRRLPNPVGRPPMVAFYSALAGPPVPDGALPCLHIAAVDRDAAMH
                     AADLQPGRYWAFAPGAEYGPAKRWPAAHFAELARSLHRSSGLPVVLIGSAAEAALCDE
                     VAAAAPGACRVLAGAISLFEAMALIAAARGVVSNDSGLMHVAAAFGVPQAAVFGSTSP
                     EHTPPLNKRARVLWLKEELQLDCAPCFDRSCRFGHTRCLVEVSASRVEDALASALYSA
                     SLPA"
     gene            complement(6892..7095)
                     /locus_tag="VF308_03670"
     CDS             complement(6892..7095)
                     /locus_tag="VF308_03670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015012123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HEX7435778.1"
                     /translation="MSAPIAVVEVSAADLQGPGVVFCPNPKMPLWSNHPRVFIDVATA
                     GVGKCPYCGTVYRLKAGEKLPAH"
     gene            complement(7103..8026)
                     /locus_tag="VF308_03675"
     CDS             complement(7103..8026)
                     /locus_tag="VF308_03675"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HEX7435779.1"
                     /translation="MSMADRDGKIWMDGALVEWRDAKIHVLTHTLHYGCGAFEGVRAY
                     DTVDGTAIFRLQEHTERLFNSAKILRMKIPFTPAQVMEAQKTVVRANQLASCYLRPLV
                     WIGSEKLGVSPRGNTIHLMIAAWPWGAYLGEEGMRRGIRVKTSSYTRHHVNITMTQAK
                     AVSNYTNSILANMEALDDGYDEALLLDASGFVSEGAGENLFIVRRGVVYTPDLSAGAL
                     DGITRNTILAICNDLGLKLIEKRITRDEVYICDEAFFTGTAAEVTPIRELDRIELGSG
                     SRGPITEKIQSAFFDIVNGRNPKYAEWLSKV"
     gene            complement(8091..8477)
                     /locus_tag="VF308_03680"
     CDS             complement(8091..8477)
                     /locus_tag="VF308_03680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435780.1"
                     /translation="MSPIVGWILAALALAAGWRAYGGLGVAFGATLIVFWLVLQFNRS
                     VRVMRNAGAAPIGRIDSAVMLNARLRAGMQMLQVLTLTKSLGRRVSPGADVYAWTDAG
                     LAEVVVTFEHGRCKRWVLNRPPESAE"
     gene            complement(8494..9873)
                     /gene="radA"
                     /locus_tag="VF308_03685"
     CDS             complement(8494..9873)
                     /gene="radA"
                     /locus_tag="VF308_03685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010466975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEX7435781.1"
                     /translation="MAKDKSIYTCTECGGTSPKWLGKCPSCGAWNTLVESIAEGAAKN
                     RYQTSSARGLIATPVVASLSEIEASEVDRQPTGIDELDRVLGGGIVAGGVVLIGGDPG
                     IGKSTLLLQALDSLSRQMKTLYVTGEESGAQVALRSRRLGLGASGVRVLAEIQLERIS
                     AAIDAEQPAVCVIDSIQTVYSDELSSAPGSVAQVRECAAQLTRTAKSTGTTIILVGHV
                     TKDGALAGPRVLEHIVDTVLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKG
                     VANPSAIFLSTHGDPVAGSCVLVTLEGTRPLLVEVQALVDSGGPSPRRLSVGIERDRL
                     AMMLAVLHRHAGIAASDQDVFVNAVGGVRISEPAADLAVMLAIQSSLRGKSLPRGFFA
                     FGEVGLAGEVRPAPRGQERLKEAAKLGFSIAMVPKANAPRGASKSIEGLTIHAVERIE
                     EAIDLVRSL"
     gene            complement(9891..10295)
                     /gene="arfB"
                     /locus_tag="VF308_03690"
     CDS             complement(9891..10295)
                     /gene="arfB"
                     /locus_tag="VF308_03690"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015014978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue aminoacyl-tRNA
                     hydrolase ArfB"
                     /protein_id="HEX7435782.1"
                     /translation="MADPVSIAEDEVELTAIRAQGAGGQNVNKVSSAIHLRFDIAASS
                     LPAEVKQRLLALRDQRITAEGVVVIKAQTSRSQETNRADALRRLRELVASVALPPRAR
                     RPTRPTRASKERRLEGKALRGAVKAGRAKVGD"
     gene            complement(10316..>10949)
                     /gene="alr"
                     /locus_tag="VF308_03695"
     CDS             complement(10316..>10949)
                     /gene="alr"
                     /locus_tag="VF308_03695"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013538701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEX7435783.1"
                     /translation="WSDADADPATSPGIARQRAAFDAVTRDLPGDRSLCNSAATLRHG
                     AEPGVRGDWIRPGIMLYGSSPDYPAHAIDDWQLRPAMTLASEIIATQDLEAGESVGYG
                     SSFSAPRPMRIGVVACGYADGYPRSAPTGTPVLVDGVRTATVGRVSMDMITVDLTPVP
                     AAAVGSAATLWGIASSNGAILPIDEVARAAGTVGYELMCALAARVPAGAA"
BASE COUNT         1712 a         3820 c         3815 g         1602 t
ORIGIN      
        1 gttccagcag gcagcgaacc agaccgtgag cggcgtgcgg gttcggtcga agatggttcc
       61 cgccgtcacg gacgtgcggc tgccacagtc cgtgcacatg aacctcccgt ctcccagccg
      121 ccatccacca gcgtggccgc attccgggca gacgaacccg gacggccatc gcagccactc
      181 gaggtagtcc aagcagtccg cgtcggactg gaaccacgtc tggaactcgc cgaggcaacc
      241 ggggtagtga atgcctgcgc tccggcgctc catgacgata gtatgcgcct agctccggtt
      301 aaatggatag cccttgggac acttttagga cacttggtcc cgcttcgccg cttcgatcta
      361 caaaacgcgc taagtcgttg atttcattgg tgcgcccggc aggtatcgaa cctgcaaccc
      421 ctgccttcgg agggcagtac tctatccatt gagctacggg cgcggcgcct tcgattctat
      481 cagcgcaccc tccgcgacgc ggggccgggc ggggcgtcgg ccctataatt taaggtttgg
      541 gtgcgtctcg ccgaggcgcc ggcgcgcccc ctgagcgcgc ccttttcgat ttcgcagttg
      601 aggatccgat gaccgacgcc ccagaatcac aagagcacga cgactcgcac gaaggcccga
      661 tccgcacgcc gaagcaattg atcctcgcgg tgctctgggc gcacatcctc ccgatcggcg
      721 ggatcctgct cctcgtggcc ttcgtgacga cccacaaccg gccctcggcc ggcagcgacg
      781 cgctcgccgc accggccgtt gccaagcgca tccagccggt ggggcatgtt gaactgcgcg
      841 acacctcgga cgtggcctcg ctcaagaccg gcgagcaggt cttcgcggcg caatgcaccg
      901 cctgccacac ggccggcgtg gccggggccc cgaagttcgg cgacgccgcg gcctgggccc
      961 cgcgcatcgc gaccggctat gacgcgctgc tccattcggc attggccggc aagggtgcga
     1021 tgaccccgca gggtggcggc gacttcagcg acctcgaggt cggccgcgca gtggtctaca
     1081 tggccgacaa ggccggcgcg aaattcgaag agccgaaggc tccgccggcg acgccggcga
     1141 gcgcgaaggt ggatcagggc ggcgacgccg ctgccgcggc cggcccgagc gctcaggcag
     1201 cgatggccac cgccaccacg tccgcgaaga cggctccggc cgccccggag gcagcgcacg
     1261 gcgctgccgt gccggccctc tacacgcaga tctgccaggc ctgccatgcg gccggcgtgg
     1321 ccggcgcgcc gaagctgggc gacaaggccg cgtgggcgcc acgcctcgcg caaggcatcg
     1381 atggcctgac ggcgagcgcg atcaagggca agggcgcgat gccgccgaaa ggcggttcgg
     1441 ccgcgaacga tgccgacatc aaggccgtcg tgacctacat ggcgaacaca gcgaagtgac
     1501 gcgacggcct gccgcctcgg ctcaggcctt gggcatgacc aggccttcga tcggagtggg
     1561 ccgcaggcga taaccgaagc gctgcaccag cgcttcgaaa ctcgtttcgg tgggacgcca
     1621 gcggccagcc tccacggcgg ccgcggctgt ttccatatcg agcgtgtgca cgagaccgag
     1681 cccgatgtcg gtcgcgacga agagccggcc ggcgccgtcc agccacgccg actcgaaccg
     1741 cgccggcgcg ccagtgtgac tgacgatccc cgggtcggcg ccgggcccgg cctgcaggcg
     1801 ccagatccac ggcgccgcct cgagctcgac atagaccctc tgcggcccgt tctggaagta
     1861 ccagcaaccg tcttcgtcgc tggcgtagtt gcgctcgatg aagtcgcgca gcttttcatg
     1921 caggatgcgg ctgcccttga ttttcggaaa cgggccggcg gcctgcgtcc ggtcgtcgcg
     1981 catgtaccag tcgccgcgtg cgtcgagcgc gagccagccg tagcagtgcg gcacgttcgg
     2041 ccacttcttc agggccgcct tgaccatctc gtccatcggt cgagtgtggc tcagagtcgt
     2101 tggccgatcc agtccatcac ccttgcaggc atggtgcgaa catgcccggg ccagccgcct
     2161 ccgggaaagc cgacatggcc gccatgcgcg ggctgccaga gcgtcacatg cggcccgacc
     2221 tcatgcgccg cgggcaggct cgacgccggc acgaacgggt cgttgagcgc attgacgacg
     2281 agcgccggga tgcggatccg gtgcagatgc ggtttggccg acccgcgcga ccagtagtcc
     2341 tcggtatcgc gaaagccgtg cagcggcgcg gtgaaggcgt tgtcgaaggc gtagaggtcg
     2401 cgcgccgcaa gcaggcgctc ccgatcgaaa aggccgggat gctgggcaag cttggcaagc
     2461 gccttcggct tcatcgtgcg caggaacatg cgcgtgtaga cgagccggtt gaagccgctg
     2521 ccgatcgccc ggccgcccgc cgcgagatcg agcggagaag acaccgccgc aacggcgcga
     2581 acgcactcgg ccgcggtcgt gccggcctct tcggcccagc gcaacagggc gttgccgccg
     2641 agcgaaaccc cgaccgcaac aatcggcccg gcgtgcagca agcgcatgcg ccgcaggatc
     2701 cagccgactt cctcgaaatc gcccgagtgg taggcccgcg gcgcgagatt cagctcgccc
     2761 gagcagccgc gaaaatgcgg caccgcgaag cgccagccgt ggcggcgcgc ccagtcggcg
     2821 aaggccagcg catagtggct cgccgacgaa ccctcgaggc cgtgaaacag caccagcagc
     2881 ggcagcgccg tgtcttcgcc ctgccagtcg acgtcgatga agtcgccatc cgaggtgggc
     2941 cagcgttcgc gccggaaggc aggttgcgcg ccggtgtaag acctggcgac gagcgccggc
     3001 cagatggtct gggtgttgcc gccggcgagc cagggtggcg cacggtagtc gtccatcgtg
     3061 gaagtcagtg gaggaccgag gccgcttcga cgaggacctg caccgcgccc ggcattcccg
     3121 ggctcgcgtg gtgcgcgacg aggcgccagc cctccgcggt cttgaggtag acattggtcg
     3181 caacgaccca cgccgactgc gggccgtcgg cggccagcac gcgcacccgc tcaagcacgc
     3241 tgtgcacggc gcaggaatgg ctgcgcaggc gccgcacccg ctcgggatgc gcatcgatcg
     3301 cgccctggcc gaacatcgcg tcgaacgagg cgcggatcgc cgcggcgccg acgaggcgcg
     3361 gagcgcccgg gtgcacgcag ctgatgtcgt cgtcgtccga ccagaccgcc atgaggcgct
     3421 cgatgtcgcc gcgctgcagg gcctcgtaga actgcagctc gatctcgtcg ggtgacgagg
     3481 gcggcgatgg cggggctttc gggcgtgcca cggcgatctg cgcggtcact tgaagacgac
     3541 cgtcttgtgg ccgttcatca gcacccggtg ctcgacatgc cagcgcactg ctcgcgccag
     3601 cacgacgctc tcgacatcgc ggccgactgc ggcgatgtcc tcggggtcga gcgcatggtc
     3661 gacgcgggcc acgtcctgct cgatgatcgg gccttcgtcg agctcggcgg tcacgtagtg
     3721 ggccgtcgcg ccgatcagct tcacgccgcg gtcgtgggcc tgctcgtagg gccgcgcgcc
     3781 cttgaagctc ggcaggaagc tgtggtggat gttgatcgcg cggcctttca ggaagcggca
     3841 gaaatcggcg ctcaggatct gcatgtagcg cgctagcacg acgaggtcga cctgctcgtc
     3901 ttggagcagc ttctcgattc gaagctcctg ggcccgcttg gcctcgggcg aggaacccga
     3961 cggcagcggc acatgatgaa acgcgagacc gaagctcgcc gcgagcgccg cgaagtccgg
     4021 atggttcgac accacgccgc ggacgtcgac cttcaactgc cccgagtgcc agcgaaacag
     4081 caggtcgttc aggcaatgcc cgtgcttgct caccatcaac atgagacggg gtttgcgcgc
     4141 caccgcgtgc aagtgcgcgt ccatgccgaa ctgcgcgcga acggcgtcga agagcgcatc
     4201 gaggcgcccc ggatcggcaa gcgcctcggg tgcctcgaaa tgcacgcgca tgaagaagag
     4261 tcccgtgctg tccgggctcg acacatcgcc gaactgctgc gaatcgacga tgttgcagcc
     4321 ggcatgaaag agcaccgccg agaccgcatg gacgatgcct cgggtgtcgt gacacgacag
     4381 cgtgaggacg aattcggggg gacggggcat ggcaaaggcg ggcggcgccg cggcgcctag
     4441 gcgcctgggc gctgtcgctg cgacagtctt ggatagactc cattgtatga agcgtatgaa
     4501 gcgcccgtcc gtgcccggcc agaccctgga gtggaccgaa cgcagtcacg atctctcgcg
     4561 cctgctggcg cgcgcgagcc tcggcgatcg cgcggcattt gccacgcttt acgagcgaac
     4621 cagcccgcat ctgttcgcgg tggtgttgcg tatcaaccgg gaccgggccc aggcagaaga
     4681 tatcctgcag gaggtgtacg tcaacgtctg gcgcgcggcg aagagcttcg acgcggccca
     4741 gagtcaaccg ctgacctggc tcaccagcat cgcgcgcaac cgcgcgatcg acagcctgcg
     4801 ccggggccag acccgtccgc agatccagac cttcggcgcg tccgagggcg ccaccgacgc
     4861 agaggacgat tccgtgtacg acaccgtggc cgacgctgcg ccgggcccgc tcgaactgct
     4921 gagccaggct tcggaggcgc gcgcgctcgg gggctgcatg gagcgcctcg gcgccttgca
     4981 gcgccagagc gtggcgctgg ccttctatca cggcctcagc cacgccgagg tggccgagca
     5041 gatgcgccag ccgctcggca ccgtgaagtc gtgggtgcgg cgtgcgctca tcatcctcaa
     5101 ggattgcctg caaggcgcga cgcagcgcga cggcgccgaa aggagcacgt agtggactac
     5161 ggccgctccg acctggccga ccggctcgcc gcggcctatg tgaccggcac gctgcgcggc
     5221 gcggcgcggc gccgtttcga ggcgctgctg ccggcccacg tgcgcttgcg cgaagcgacc
     5281 tgggcctggc aggagcgcct gatgccgctg acgaccgtgc tcccgccgga acaggcgccc
     5341 gcgcgcgtct ggactcgcat cctggcgcgc atcgacggcg agggagcggc ggcgccgcgt
     5401 cccggcatcg gatcgaagct tgccttctgg cgcggcctga ccgcattcgc gggcgtcgcg
     5461 gcgctgacgc tcgcgctgct gctggcgagc ccgacgccgg tgcagccgcc gatcgtcgtc
     5521 gtgctctcgg gcacaggcgc gggcgcggac ggggtcaccg cggcatcctt cgtcgccagc
     5581 atcagcggcg acggccgcgc gctcgtcacg aagccgctcg taaatgtcgg cctgcaggcc
     5641 gaccatgccc tcgagctctg ggccgtggcc aaaggcggcg cgccgcgttc gctcggcctg
     5701 atctcggcga gcggcgcgac cgttgtcacg aagggcaagg tgctcgaagg cgccgaggcg
     5761 ctcgcggtga gcctcgagcc gccgggcgga tcgcccaccg gcgcgccgac cggaccggtg
     5821 ctttacgccg gcaagctcgc gctgtagagc gcactggcga gcgcgtcttc gacgcggctc
     5881 gcgctcactt cgacgaggca gcgcgtgtgg ccgaagcggc agctgcggtc gaaacacggc
     5941 gcgcaatcga gctgcaactc ctccttgagc cacagcaccc gggcgcgctt gttgaggggc
     6001 ggcgtgtgct cggggctcgt cgagccgaag acggcggcct gcggcacgcc gaaggccgcg
     6061 gcgacgtgca tcaaccccga gtcgttgctg acgacgccgc gcgccgccgc gatcaatgcc
     6121 atcgcctcga aaagcgaaat cgctccggcc agaacgcggc acgcccccgg cgccgcggcg
     6181 gcgacctcgt cgcaaagcgc ggcctcggcc gccgagccga tcagaacgac cggcagcccg
     6241 ctcgaccggt gcagcgagcg cgcgagctcg gcaaagtgag ccgccggcca gcgcttcgcc
     6301 gggccatatt cggcgccggg cgcgaaggcc caatagcggc ccggctgcag gtccgccgca
     6361 tgcatcgccg cgtcgcggtc caccgccgcg atgtgcagac agggcagtgc gccgtccggc
     6421 acgggcggtc cggccagggc gctgtagaac gccaccatcg gcggacgtcc gaccgggttg
     6481 ggcaagcgcc gatcgaggag cacgaaacgc ccttcaccgc gataaccgat gcgtttcggg
     6541 atcccggcga gccacggcac cagcgccgac ttgaacgagt tcggcagcac atacgccaca
     6601 tcgaagcggc cgcgcagcgc ggccgccacg cgccagcgcc gggcccaatc gagccggccg
     6661 tgggcgaacg gcaactcgat gacctcggcc acctgcgcca tcgcgcggta cacgggtgct
     6721 acccatggca gggccgccac cgcgacccgc tcgccgcgcc cggccaggcg ggcgaggagc
     6781 ggctccgaca tgacggcgtc gccgatccat tgcggcgcga tgacgagcga acgggtcatg
     6841 tccggagggc ggtcgctcga agcgttcgct gcgggcgacc cgcgacgcca ctcaatgcgc
     6901 cggcagcttt tccccggcct tgagccggta gaccgtcccg caataggggc acttgccgac
     6961 gcctgccgtc gcaacgtcga tgaagacgcg cggatgattg ctccacaggg gcatcttcgg
     7021 gttcgggcaa aacacgacgc ccgggccctg caggtcggcg gcgctgactt cgacgacggc
     7081 gatcggggcg ctcatggacg cattagacct tgctgagcca ctcggcgtac ttcgggttgc
     7141 ggccgttcac gatgtcgaag aacgcgctct ggatcttctc ggtgatcggg ccgcgcgagc
     7201 cgctgccgag ctcgatgcga tcgagctcgc ggatcggcgt gacctcggcc gcggtgccgg
     7261 tgaagaacgc ctcgtcgcag atgtagacct cgtcgcgcgt gatgcgcttt tcgatcagct
     7321 tcaggccgag gtcgttgcag atcgcgagga tggtgttgcg ggtgatgccg tcgagcgcac
     7381 cggccgagag atcgggcgtg tagacgacgc cgcgcctgac gatgaacagg ttctcgccgg
     7441 cgccttcgct gacgaagccg ctcgcgtcga gcagcagcgc ttcgtcgtag ccgtcgtcga
     7501 gcgcctccat gttggcgagg atcgagttgg tgtagttgct gaccgccttg gcctgcgtca
     7561 tcgtgatgtt gacgtggtgc cgggtgtagc tcgaggtctt gacgcggatg ccgcgccgca
     7621 tgccttcctc gccgaggtag gcgccccacg gccacgccgc gatcatcagg tggatcgtgt
     7681 tgcccctggg cgagacgccg agcttttcgg agccgatcca gaccagcggc cgcaggtagc
     7741 acgaggcgag ctggttcgcg cgcacgacgg tcttctgcgc ctccatcacc tgcgcgggcg
     7801 tgaacggaat cttcatgcgc aggatcttcg cgctgttgaa aagccgttcg gtgtgctcct
     7861 gcaggcgaaa gatcgcggtg ccgtcgacgg tgtcgtaggc gcgcacgcct tcgaaggcgc
     7921 cgcagccgta gtgcagcgtg tgggtcagca cgtggatctt ggcgtcgcgc cattccacca
     7981 gcgcgccatc catccagatc tttccatcgc ggtcggccat cgacatggcg ggttcctttc
     8041 gtctgcggcc gcgcgggcag cgtgggcagc cgctcggcaa gcagacgatt ctattcggcg
     8101 gactcgggcg ggcgattgag cacccagcgc ttgcagcgcc cgtgctcgaa ggtgaccacg
     8161 acctcggcaa ggccagcgtc ggtccacgca tacacatcgg cgccgggcga gacacggcgc
     8221 cccaggctct tcgtcagcgt cagcacctgg agcatctgca tgccggcgcg cagcctggcg
     8281 ttgagcatca cggcgctgtc gatgcggccg atcggcgcgg cgccggcatt gcgcatcacg
     8341 cgcaccgaac ggttgaactg caggacgagc cagaacacga tcagcgtggc gccgaacgcg
     8401 acgcccagcc cgccgtacgc tcgccacccg gccgcgagcg ccagcgccgc gagaatccag
     8461 ccgacgatcg ggctcatgct cgaggcatcg ggctcaaaga cttcgcacca ggtcgatcgc
     8521 ttcctcgatc cgctcgaccg catggatggt gagcccctcg atcgacttcg aagcgccacg
     8581 cggcgcattg gccttgggca ccatcgcgat gctgaagccg agcttcgccg cctccttcag
     8641 gcgttcctgg ccgcgcggcg cgggacgcac ctcgccggcg aggccgactt cgccgaacgc
     8701 gaagaagccg cgcggcaggg acttgccgcg caggctgctc tggatcgcga gcatcaccgc
     8761 gaggtcggct gccggctcgc tgatgcgcac gccgccgacc gcgttgacga acacgtcctg
     8821 gtccgatgcg gcgatgccgg catggcggtg cagcaccgcg agcatcatgg cgaggcggtc
     8881 gcgctcgatg ccgacggaga ggcgccgcgg gctcggcccg cccgaatcga ccagcgcctg
     8941 cacctcgacc agcagcggcc gcgtgccctc gagcgtgacg agcacgcacg agcccgcgac
     9001 cggatcgcca tgcgtcgaca ggaagatcgc gctcggattc gcgacgccct tcaggccgcg
     9061 ctcggtcatc gcgaagacac cgatctcgtt gacggcgccg aagcggttct tgatcgcgcg
     9121 cacgagccga aagctcgaat gggtatcgcc ttcgaagtag aggacggtgt cgacgatgtg
     9181 ctcgagcaca cgcggcccgg cgagcgcgcc gtccttggtc acgtggccga ccaggatgat
     9241 ggtcgtgccg gtgctcttgg cggtgcgggt gagctgggcc gcgcattcgc gcacctgcgc
     9301 gaccgagccg ggcgccgacg agagttcatc gctgtagacc gtctggatcg aatcgatcac
     9361 gcacaccgcc ggctgctcgg cgtcgatcgc cgcgctgatc cgctcgagct ggatttcggc
     9421 gagcacgcgc accccgctcg cgcccaggcc gaggcggcgc gagcgcagcg cgacctgggc
     9481 gccgctctct tcgccggtga cgtagagcgt cttcatctgc cgcgagagcg aatccagcgc
     9541 ctgcagcagc aaggtcgact tgccgatccc gggatcgccg ccgatcagca ccacgccgcc
     9601 ggcgacgatg ccgccgccca gcacgcggtc gagttcgtcg atgccggtcg gctggcggtc
     9661 gacctcggat gcctcgatct ccgagagcga agcgaccacc ggcgtggcga tcaatccgcg
     9721 cgccgacgat gtctggtagc ggttcttcgc cgcgccctcg gcgatcgatt cgaccagcgt
     9781 gttccaggcc ccgcagctcg ggcatttgcc gagccacttc gggctcgtgc cgccgcattc
     9841 ggtgcaggtg tagatcgact tgtctttcgc catgccggac tgtagcggcc ctagtcgccg
     9901 accttggcgc gcccggcctt gacggcgccg cgtagcgcct tgccttcgag gcggcgctcc
     9961 ttcgacgcac gggtcggacg ggtcgggcgc cgcgcgcgcg gcggcagcgc cacgctcgcg
    10021 accagttcgc gcaggcgccg cagggcgtcg gcgcggttcg tctcctggct gcggctggtc
    10081 tgtgccttga tcacgacgac gccttcggcc gtgatgcgct ggtcgcgcaa ggcgagcagg
    10141 cgttgcttca cctcggccgg cagcgacgac gcggcgatgt cgaaacgcag atggatcgcg
    10201 ctcgagacct tgttgacgtt ctgcccgccc gccccctgcg cacgaatggc ggtgagttcg
    10261 acctcgtctt cggcgatcga gaccgggtcc gccatggcgt cgccgttcga cgaagtcagg
    10321 ccgcgccggc cggcacccgc gccgcaagcg cgcacatcag ctcgtagccc accgtgcccg
    10381 cggcccgcgc gacctcgtcg atgggaagga tcgcgccgtt cgacgacgcg atcccccaca
    10441 gcgtcgccgc gctgccgacc gccgccgcgg gcaccggcgt caggtcgacc gtgatcatgt
    10501 ccatcgagac gcggccgacc gtcgcggtgc gcacgccgtc gacgagcacc ggcgttccgg
    10561 tcggcgcact gcgcggatag ccgtcggcat agccacaggc gacgacgccg atgcgcatcg
    10621 gacgcggcgc gctgaaacta ctgccgtagc cgacgctctc gccggcctcg aggtcctgcg
    10681 tcgcgatgat ctccgaggcg agggtcatcg ccgggcgcaa ctgccagtcg tcgatggcat
    10741 gcgccgggta gtcgggagac gatccgtaca gcatgatgcc cggacgaatc cagtcgcccc
    10801 gcacgcccgg ctcggcgccg tggcgcagcg tcgccgcgct gttgcaaagc gaccggtcgc
    10861 cgggaaggtc gcgcgtcacc gcgtcgaatg cggcgcgctg ccgcgcgatg ccgggagaag
    10921 ttgcggggtc cgcgtcggca tccgaccaa
//
LOCUS       DASVHM010000184         3558 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_85407, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000184 DASVHM010000000
VERSION     DASVHM010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3558
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85407"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..898
                     /locus_tag="VF308_03700"
     CDS             <1..898
                     /locus_tag="VF308_03700"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656796.1"
                     /note="Catalyzes the rate-limiting step in dNTP synthesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEX7435784.1"
                     /translation="AVEFADRSMEAVCYHAYWASTELAAERGRYSSYRGSLWDRGILP
                     VDTLDLLAEQRGTLKGGDGAALVEIDRSTTLDWNALRARITEHGMRNSNCVAIAPTAT
                     ISNIVGVSASIEPSFGNLSVKSNLSGEFTIVNEYLVRDLKKVGLWDEVMVMDLKHFDG
                     SLQRIDRVPADLKSLYATAFEIETQWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDE
                     TYKLAWLRGLKTTYYLRTQSATNAEKSTVKSSQLNAVSNGARSGAAAGASSTATAAPA
                     SDELASDVKFCALDNPECEACQ"
     gene            1049..2242
                     /locus_tag="VF308_03705"
     CDS             1049..2242
                     /locus_tag="VF308_03705"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEX7435785.1"
                     /translation="MLVWEEDRTTENVHAASTAPRAVSALPSLVAAPSFSAEPVAFPP
                     QRPASAAATPSAPIARRVKASDKRIINGATDVNQLVPFKYKWAWEKYLATCANHWMPQ
                     EVNMSRDIATWKDPNGLTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQ
                     FLLRQAFEEAIHTHAYQYIVESLGLDESEIFNAYNEIDSIRDKDEFLIPFITAIMDPH
                     FHTGTAENDRTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDE
                     SMHCNFGIDLINQIKAENPQLWTPEFKAEIKALFEKAVALEYRYAEDTMPRGVLGMNA
                     SMFKGYLRYIANRRAVQIGLAELFPNEENPFPWMSEMIDLKKERNFFETRVIDYQTGG
                     ALTWE"
     gene            2450..2941
                     /locus_tag="VF308_03710"
     CDS             2450..2941
                     /locus_tag="VF308_03710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006400402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone"
                     /protein_id="HEX7435786.1"
                     /translation="MATAKKAAKKSSAKKSTAKKSTAKKSGAKKSAAKKTGVKRAAKK
                     SGAKKSAKKSAKKSAKKSAKKSAKKSAKKSAKKSGKKAAKKSGAKKAAKKSGTKKAAK
                     KPAKKAAKKAPAKKAPAKKAAPAKKAASSSSMAAPSAMPATPAKTALSPQAAWPFPTG
                     SKP"
     gene            complement(2989..3366)
                     /locus_tag="VF308_03715"
     CDS             complement(2989..3366)
                     /locus_tag="VF308_03715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435787.1"
                     /translation="MDIRQAGVLAVAIPVALLVASVVTWAACRWWYGRKLAAAGHRLQ
                     KSEKGRLFSQQQTAQARQQIGQLKAELESLQQSAVESQAVRRRAAQLEEALSAVERAP
                     AADVGMMPLVSAHGFADTQILPE"
BASE COUNT          716 a         1176 c         1126 g          540 t
ORIGIN      
        1 cgcggtcgaa ttcgccgacc gctcgatgga ggcggtctgc taccacgcgt attgggcctc
       61 gaccgagctc gccgccgagc gcggtcgcta ctcgagctac cgcggttcgc tctgggatcg
      121 cggcatcctg ccggtcgaca cactcgacct gctggccgag cagcgtggca cgttgaaggg
      181 cggtgacggc gcggccctgg tcgagatcga ccgcagcacg acgctcgact ggaatgccct
      241 gcgcgcgcgc atcaccgagc acggcatgcg caactcgaac tgcgtcgcga tcgcgccgac
      301 ggcgacgatc tccaacatcg tcggcgtcag cgcctcgatc gagccctcgt tcggcaacct
      361 ctcggtgaag tcgaacctgt cgggcgagtt cacgatcgtc aacgagtacc tcgtgcgcga
      421 cctgaagaag gtcggcctct gggacgaggt gatggtcatg gacctcaagc acttcgacgg
      481 ctcgctgcag cggatcgacc gcgttcccgc cgacctgaag tcgctctacg cgaccgcgtt
      541 cgagatcgag acgcagtggc tggtcgaggc cgcggcgcgg cgccagaagt ggatcgacca
      601 ggcgcagtcg ctcaacatct acatggccgg cgcctcgggc aagaagctcg acgagaccta
      661 caagctcgcc tggctgcgcg gcctgaagac gacgtactac ctgcgcacgc agagcgccac
      721 gaacgccgag aagtcgaccg tcaagtcgag ccagctcaac gcggtgtcga acggcgcgcg
      781 cagcggcgcg gcggccggtg cgagcagcac cgcgacggcc gcgccggcga gcgacgagct
      841 cgcgagcgac gtcaagttct gtgcgctcga caacccggag tgcgaagcgt gtcagtgagc
      901 aagcgcgtcg tcttcgcggc gtgtgaacga gtaccgcgaa tcacggttcg cgatgcaaca
      961 gagcaacaaa atcgaagcgg caggattgat atgtcttggg cttcgcactc attgttccga
     1021 taatccggac gcagaggaaa tatccgcaat gctggtttgg gaagaagaca gaaccaccga
     1081 gaacgttcac gccgcaagca ccgcgccccg cgcggtctcc gccttgccgt cgctggttgc
     1141 ggcgccctcc ttcagcgccg aaccggtcgc ctttcctccg cagcgtccgg cttctgccgc
     1201 cgccacgccc tcggcaccga tcgcgcgccg cgtcaaggcg tccgacaagc ggatcatcaa
     1261 cggcgccacc gacgtcaacc agttggtgcc gttcaagtac aagtgggcgt gggagaagta
     1321 cctcgctacc tgcgccaatc attggatgcc gcaggaagtg aacatgtcgc gcgacatcgc
     1381 gacctggaag gatccgaacg gcctgaccga cgacgagcgc cgcatcgtca agcgaaacct
     1441 cggcttcttc gtcaccgccg attcgctcgc cgccaacaac atcgtcctcg gcacctaccg
     1501 ccacatcacg gcgccggagt gccgccagtt cctgctgcgc caggcgttcg aggaagcgat
     1561 ccacacccac gcctaccagt acatcgtcga gtcgctgggc ctcgacgaga gcgagatctt
     1621 caacgcctac aacgagatcg actcgatccg cgacaaggac gagttcctga tcccgttcat
     1681 cacggcgatc atggatccgc acttccacac tggaacggcc gagaacgatc gcaccctctt
     1741 gaagtcgctg atcgtcttcg cctgcctgat ggaaggcctg ttcttctacg tcggcttcac
     1801 ccagatcctg gcgctcggcc ggcagaacaa gatgaccggc gccgccgagc agtaccagta
     1861 catcctgcgc gacgagtcga tgcactgcaa cttcggcatc gacctgatca accagatcaa
     1921 ggccgagaac ccccaactct ggacgccgga gttcaaggcc gagatcaagg cgctgttcga
     1981 gaaggcggtg gcgctcgagt accgctatgc cgaagacacc atgccgcgcg gcgtgctcgg
     2041 catgaacgct tccatgttca agggctatct gcgctacatc gccaaccggc gcgcggtgca
     2101 gatcggcctc gcggagctct tcccgaacga ggaaaacccg ttcccgtgga tgagcgagat
     2161 gatcgacctc aagaaggagc gcaatttttt cgagacccgc gtcatcgact accagaccgg
     2221 tggtgcgctg acgtgggagt agtggccggc gcgcgcgttt cgcgtcggca agtgagagat
     2281 caagattcgc aggccccaca gagtggcgac aacgagcgct gccagcctgc cccccgattc
     2341 atcgtactgg ggcgcccctc ctgggcagtc cgtgggcggt gaatagccac tggccgacga
     2401 cgcgtcgaaa gccggtggtt ccatgtcaac ttgatcaagg agaaacgtga tggcaactgc
     2461 gaaaaaggcc gctaagaaat catcggccaa gaagtcaacg gcgaagaagt cgacggcgaa
     2521 gaagtccggc gccaagaagt cggccgccaa gaagaccggc gtcaagaggg ccgccaagaa
     2581 gtctggcgcc aagaagtccg ccaagaagtc ggccaagaag tcggcgaaaa agtcggcgaa
     2641 aaagtccgcc aagaagtcgg ccaagaagtc agccaagaag tccggcaaga aggccgccaa
     2701 gaagtctggc gcgaagaagg ctgccaagaa gtctggcacc aagaaggcgg ccaagaagcc
     2761 ggccaagaag gcggctaaga aagcgcctgc caagaaggcg cctgccaaga aggcggcgcc
     2821 tgcgaagaag gctgcttcgt cgtcgtcgat ggccgcgccc agtgcgatgc ctgcgacacc
     2881 agcgaagacg gccctcagcc cccaagccgc ctggccgttc ccgaccggca gcaagccctg
     2941 accgacgcgt tttgcgtctg tcatcagccc ggcctcggcc gggctttttt attccggaag
     3001 gatctgggtg tcggcgaagc cgtgcgccga gacgagcggc atcatgccga cgtcggccgc
     3061 cggcgcacgc tcgacggcgc tcagcgcctc ctcgagctgg gcggcgcgtc gccgcaccgc
     3121 ctggctctcg accgcgcttt gctggagcga ctcgagctcg gccttgagct ggccgatctg
     3181 ctggcgcgcc tgtgccgtct gctgctgcga gaagagtcgc cccttttcgc tcttctgcag
     3241 ccggtgtccg gcggccgcga gcttccgccc gtaccaccag cggcacgccg cccaggtgac
     3301 gacggaagca acgaggagcg cgaccgggat cgctaccgcg agcacgcctg cctgacgaat
     3361 gtccatgacg acggacttcg gtgcgacttc cgtgaacttg agctagacgc cggtcagacc
     3421 gcggcaaacg tgcgatccag cacatgattc tggccgcccc ggctggcgat cttgagggcg
     3481 ccgagccggt tgccgaggcg ggcgcattcg gccagcgacc agccgcgctc gaggccgaac
     3541 agcatggcgc tgcgaaat
//
LOCUS       DASVHM010000185         4041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_445549, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000185 DASVHM010000000
VERSION     DASVHM010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4041
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445549"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..377
                     /locus_tag="VF308_03720"
     CDS             <1..377
                     /locus_tag="VF308_03720"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005796072.1"
                     /note="catalyzes the formation of 2-C-methyl-D-erythritol
                     4-phosphate from 1-deoxy-D-xylulose-5-phosphate; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEX7435788.1"
                     /translation="RVPIAYGLSHPERIESGASALAFETLCSLTFAPAEHGRFPGLGL
                     AFDALRAPAGSTAVLNAANEKAVAAFLAGTIRFDQIHTINAATVAAVTPDRDAAGSLE
                     GLLDLDRRARTRAAQLVKELSA"
     gene            374..1744
                     /gene="rseP"
                     /locus_tag="VF308_03725"
     CDS             374..1744
                     /gene="rseP"
                     /locus_tag="VF308_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEX7435789.1"
                     /translation="MITTVLAFVLTLGVLIVIHEYGHYRVAVACGVKVLRFSVGFGRV
                     LWRRQATPDSTEFVVCTLPLGGYVRMLDEREGPVAPAELNRAFNRKSLSRRAAIVAAG
                     PAANLLLAVVLYAAAHWIGIEEPKAVLGPPAAASLAERAGLHAGDWARASSSDGIEWH
                     DLRSLTDLRWEVTQAVLRGEHLYLMVTDREGRAQRRVALDIESLGTSEVDAKLMQRIG
                     LGSAHSEPVLGEVRAGGPAAKAGLQAGDRVVSIDGQPIEDAARVRDLIRASGNDGASK
                     PMRWQVLRGGQPLELTVTPAVVVENGARVGRIEVYPGQPPEMVTVRYGAIDGLTKAFA
                     QTWDMSTLTLKMLGKMVIGQASLRNLSGPLTIADYAGQSVRLGLAYYLGFLAVVSISL
                     GVLNLLPLPVLDGGHLMYYLFEAVTGRPISEVWLDRLQRGGVAIMLMMMSLALYNDMA
                     RLLGLH"
     gene            1754..>4041
                     /gene="bamA"
                     /locus_tag="VF308_03730"
     CDS             1754..>4041
                     /gene="bamA"
                     /locus_tag="VF308_03730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEX7435790.1"
                     /translation="MQFSFRRRAFRPSLLSIALATALHAGSAWAVEPFVLKDIRVEGL
                     QRTDPGTVFASLPFRIGDTYSDEKGAAALRALFATGLFKDVRIDIEGGVAIVIVEERP
                     VISSIDFVGLKEFDKDTLVKSLKDFGIGEGLPFDKALADRAEQELKRQYLTRSLYGAE
                     VVTTVTPLERNRVNVTFTVTEGGAARIREIRIVGNQAFSEGTLKGLFDLNDGGWFNWY
                     SKADRYSRAKLNADLETLRAYYLNRGYLEFNVESTQVAISPDKQDITITINVKEGQPY
                     VVTGVQLEGEYLGKDDEFKTLVTIRPGEPYRAEAVAETTRAFVDKFATFGYAFAKIDA
                     RPAIDRANGQVVLTLAADPQRRVYVRRVSIAGNTRTRDEVIRREFRQFESSWYDGRKI
                     KLSRDRVDRLGFFSEVNVESNEVPGTLDQVDLTITIKEKPTGNLSLGAGFSSADKLAL
                     TASIKQENVFGSGNYLGLEINTSRSSRTLVLSTVDPYFTIDGISRAFDFYYRTTQPLN
                     SQGEQYKLVTPGVSVRFGVPFSEYDTVFFGAGYERTEIRGATALPNNFFLYREKYGEV
                     SSSVPLTIGWARDQRDSALVPTAGRYERINLDWGALGDSRYLRANLQAQQYIPISKRF
                     TFAVNAEFGYGKGLSGRGFPIFKNFYGGGLGTVRGFDQGSLGPVDVTGAYIGGNRRLN
                     INNELYLPVPGTGNDRTLRLFTYVDAGNVWGENEQLRLNSLRASAGVGLSLVSPVGPL
                     KLSYGMPIRKKPEDRIQRLQFQ"
BASE COUNT          690 a         1375 c         1297 g          679 t
ORIGIN      
        1 tgcgcgtgcc gatcgcctat ggactttccc atcccgagcg catcgagtcg ggcgcgagcg
       61 cgctcgcttt cgagactctt tgttcgctga cattcgcacc ggccgaacac ggtcgttttc
      121 ccgggctcgg cctcgccttc gatgcgttgc gcgctccagc ggggagcacg gcggtactca
      181 atgccgccaa tgagaaagcc gtcgccgcgt tcctcgccgg aaccatccgc ttcgatcaga
      241 ttcacaccat caatgccgcc accgtcgccg cggtcacccc ggatcgcgac gccgcaggct
      301 cgctcgaagg cttgctcgac ctggaccggc gcgcgcgcac gcgcgcggcg caactcgtga
      361 aggaactctc ggcatgatca cgaccgttct cgccttcgtg ctgacgctcg gggtgctgat
      421 cgtcatccat gaatacgggc actatcgcgt cgcggtcgca tgcggcgtca aggtgctgcg
      481 tttctcggtc ggcttcggcc gggtgctgtg gcgccggcag gccacgcccg acagcaccga
      541 attcgtcgtc tgcaccttgc cgctcggcgg ctatgtgcgc atgctcgacg agcgcgaggg
      601 ccccgtcgcg ccggctgagt tgaaccgggc cttcaaccgc aagtcgctct cacggcgcgc
      661 tgccatcgtc gcggccggcc cggcggcgaa cctgctgctc gcggtcgtgc tctacgcggc
      721 ggcgcactgg atcggcatcg aggaaccgaa ggccgtgctc gggccgcccg ccgcggctag
      781 cctcgccgaa cgcgcaggcc tgcacgcggg cgactgggcc cgcgcctcct cgagcgacgg
      841 catcgaatgg cacgacctgc gctcgctgac cgacctgcgc tgggaagtca cgcaggcggt
      901 gctgcgcggc gagcatctct acctgatggt caccgaccgc gagggccgcg cccagcgccg
      961 tgtcgcgctc gacatcgagt cgctcggcac gagcgaggtc gatgcgaagc tcatgcagcg
     1021 catcggcctc ggcagtgcgc acagcgagcc ggtgctgggc gaggtccggg cggggggacc
     1081 ggcggcgaag gccggcctgc aggccggcga ccgcgtcgtc agcatcgatg ggcagccgat
     1141 cgaggatgcc gcgcgcgtgc gcgacctgat ccgcgccagt ggcaacgacg gagccagcaa
     1201 gccgatgcgc tggcaggtgc tgcgcggcgg ccagcccctc gagctcacgg tgacgccggc
     1261 ggttgtcgtc gaaaacggcg caagggtcgg acgcatcgag gtctatcccg gacagccacc
     1321 cgaaatggtg acggtgcgct atggcgcgat cgacggtctg acgaaggcct tcgcgcagac
     1381 ctgggacatg tcgacgctga ccctgaagat gctgggcaag atggtgatcg gccaggcctc
     1441 gctgagaaac ctcagcggcc cgttgacgat tgccgattac gccggccagt cggtgcgcct
     1501 gggcctggcc tactacctcg gctttctcgc ggtggtgagc atcagcctcg gtgtgctcaa
     1561 cctgctgccg ttgccggtgc tcgacggcgg acacctgatg tattatcttt ttgaggctgt
     1621 gacggggcgg ccgatctccg aggtgtggct cgacaggctg cagcgtggcg gggtggccat
     1681 catgctgatg atgatgtccc tggctctcta caacgacatg gcccgtctgc tgggtctgca
     1741 ctgaccgacc cgcatgcaat tctcctttcg acgccgagcg ttccgccctt cgcttctttc
     1801 gatcgccctg gccaccgccc ttcacgccgg ctccgcgtgg gcggtcgagc ccttcgtgct
     1861 caaggacatc cgtgtcgagg gcctgcagcg caccgatccc ggcaccgtct tcgcctcgct
     1921 gccgtttcgc atcggcgaca cctacagcga cgaaaagggc gcggccgcgc tgcgcgccct
     1981 gttcgcgacc ggcctcttca aggacgtgcg catcgacatc gagggcggcg tcgccatcgt
     2041 catcgtcgaa gagcgcccgg tgatctcgag catcgatttc gtcggcctga aggagttcga
     2101 caaggacacg ctggtcaagt cgctgaagga tttcggcatc ggcgagggcc tgccgttcga
     2161 caaggcgctc gccgaccgtg ccgagcagga attgaaacgt cagtacctga cgcgcagcct
     2221 ctatggcgcc gaggtcgtga cgacggtcac gccgctcgaa cgcaaccgcg tcaacgtcac
     2281 cttcaccgtc accgagggcg gagcggcgcg tatccgcgag atccgcatcg tcggcaatca
     2341 ggcgttttcg gaaggcaccc tcaaggggct cttcgatctc aacgacggcg gctggttcaa
     2401 ctggtactcg aaggccgatc gctattcgcg cgccaagctc aacgccgatc tcgagacctt
     2461 gcgggcctac tacctgaacc gcggctacct cgaattcaac gtcgagtcga cccaggtcgc
     2521 gatctcgccc gacaagcagg acatcacgat cacgatcaat gtcaaggaag gccagccgta
     2581 cgtcgtcacc ggcgtgcagc tagagggcga gtacctcggc aaggacgacg aattcaagac
     2641 gctggtgacg atacgcccgg gcgaaccgta ccgcgccgag gctgtggccg agacgacgcg
     2701 cgctttcgtc gacaagttcg caaccttcgg ctacgccttc gcgaagatcg acgcgcgtcc
     2761 cgccatcgac cgcgccaacg gccaggtcgt gctcaccctc gcggccgacc cgcagcgccg
     2821 tgtctacgtg cggcgcgtca gcatcgccgg caacacgcgc acgcgcgacg aggtgatccg
     2881 acgcgagttc cgccagttcg aatcgagttg gtacgacggg cgcaagatca agctgtcgcg
     2941 cgaccgggtc gatcgactcg gcttcttcag cgaagtcaac gtcgagagca acgaggtgcc
     3001 gggcacgctc gaccaggtcg acctgacgat cacgatcaag gagaagccga ccggcaacct
     3061 ctcgctcggc gccggcttct cgtcggccga caagctcgcg ctgacggcct cgatcaagca
     3121 ggagaacgtc ttcggttcgg gcaactatct cggcctcgag atcaacacca gccgctccag
     3181 ccgcaccctc gtgttgagca ccgtcgaccc gtatttcacg atcgacggca tctcgcgggc
     3241 cttcgatttc tactaccgca cgacccagcc gctgaacagc cagggcgagc aatacaaact
     3301 ggtgacgccg ggagtctcgg tgcgcttcgg cgtccccttc agcgagtacg acaccgtctt
     3361 cttcggcgcc ggctacgaac gcaccgagat tcgcggcgcg accgctctgc cgaacaactt
     3421 cttcctctac cgcgagaagt acggcgaagt cagcagcagc gtgccgctca cgatcggctg
     3481 ggcgcgcgac cagcgcgaca gcgcgctcgt gccgacggcg ggccgctacg agcgcatcaa
     3541 cctcgattgg ggcgcgctcg gcgacagccg ctacctgcgg gccaacctgc aggcgcaaca
     3601 gtacattccg atcagcaagc ggttcacctt tgcggtcaac gccgaattcg gttacggcaa
     3661 gggcctgtcg gggcgcggtt tccccatctt caagaacttc tacggcggtg gcctcggcac
     3721 agtgcgcggc ttcgaccagg gctcgctcgg gccggtcgac gtgacgggcg cctacatcgg
     3781 cggcaaccgg cgcctcaaca tcaacaacga gctgtatctg ccagtgccgg gaaccggcaa
     3841 cgaccggacg ctgcgccttt tcacctatgt ggacgcgggc aacgtctggg gcgaaaatga
     3901 acagttgcgt ctaaacagcc tgcgtgcatc ggccggcgtc ggcttgagtt tggtctcgcc
     3961 ggtcgggccc ttgaagctga gctacggtat gccgatacgc aagaaaccag aagatagaat
     4021 ccagaggctt caattccaga t
//
LOCUS       DASVHM010000186         3086 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_951863, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000186 DASVHM010000000
VERSION     DASVHM010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3086
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_951863"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..447)
                     /locus_tag="VF308_03735"
     CDS             complement(<1..447)
                     /locus_tag="VF308_03735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX7435791.1"
                     /translation="MIKVLEGVRVVEHGTFITGPAASMLLADLGADVVKVELPETGDP
                     FRAFKGGLYSPHFQTYNRNKRSVTANTTVAADRDRFDRLIAEADVYIQNFRPGFAEQI
                     GAGEARLRALNPRLVYCAISGFGATGPASDRPSYDTVAQAASGFLGL"
     gene            complement(444..1259)
                     /locus_tag="VF308_03740"
     CDS             complement(444..1259)
                     /locus_tag="VF308_03740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017235093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citryl-CoA lyase"
                     /protein_id="HEX7435792.1"
                     /translation="MKIGKATVPHSAISTSNADRIIVRGADLCADLIGQIGFADYFYF
                     LLTGRRPDAAASAVLNATLVAIAEHGLVPSVQASRMTLAAAPDAMQGAVAAGILGSGS
                     VILGASETAGRLFEEVDQGAARHGGDLKAAARAAVAALRAAGKAIPGYGHPLHKARDP
                     RVAALFEVSARAGAGQRHVEIAEAVEAVIPEVVGKELRMNVSAAIPAVLLGVGFPLNA
                     LKGVPMLARTASLIAHLSEELTDPIGFALSYQATREAEYTGPVPEGFAPGGHT"
     gene            complement(1295..2200)
                     /locus_tag="VF308_03745"
     CDS             complement(1295..2200)
                     /locus_tag="VF308_03745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011300257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0018576 - catechol 1,2-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0009712 - catechol-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dioxygenase"
                     /protein_id="HEX7435793.1"
                     /translation="MAQLDAGDITEAVIDRMADCTDERFKTVMTALVRHAHAFLREVQ
                     PTEAEWIGAIEFLTAVGKKCDAKRQEFILLSDTLGISMLVVALNQLKAARALTSAGAP
                     LPTEATVQGPFYWEGSPELELGADLGQGMPGEPAYYSGRVTDTRGRPVANCCLDVWSG
                     DGDGVYDMQLGDEAGMRLRARFHTDSEGGYRFWSIRPSFYPVPDDGPVGDMLRRMGRH
                     PNRPGHIHMKVYAPGHQPVTTHLFVADSPYLDSDAVFGVRNSLIVKFEAHPPGTAPDG
                     RTMSVPYHTAHYDFRLVPEALAARA"
     gene            2315..>3086
                     /locus_tag="VF308_03750"
     CDS             2315..>3086
                     /locus_tag="VF308_03750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009515867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEX7435794.1"
                     /translation="MELRHLRYFEALAETLNFTRAAQHLHVTQSTLSHQIKQLEEELG
                     HPLFDRTTKKVAMTEAGEVLRSHMVPALQQIDRGVQALRDDPPMLQGSIRLGTTHSFN
                     TRLVPLCVSTFLATSSAIHISVDELAARDIARGIASGRLDLGVSYRPDEAAGLWFEPL
                     YNEELRLVVSSRHPMARRRRVRMVELHRCRMVLLPNAFSTRQLLDECFEAAGAEPVVA
                     VELNSIAPMIELIRQTDLAGIIAETAVSKSEGLSVLPLE"
BASE COUNT          474 a         1055 c         1063 g          494 t
ORIGIN      
        1 caggcccaga aagccgctcg cggcctgcgc gacggtgtcg tagctcggtc ggtccgatgc
       61 cggccccgtg gccccgaagc cgctgatcgc gcagtagacg agccggggat tgagggcgcg
      121 caggcgcgcc tcgccggccc cgatctgctc ggcgaagccg ggacggaagt tctggatgta
      181 gacgtcggcc tcggcgatca ggcggtcgaa acgatcgcgg tcggcggcga ccgtggtgtt
      241 ggccgtcacg ctgcgcttgt tgcggttgta ggtctggaag tgcgggctgt agaggccgcc
      301 cttgaaggcg cggaacgggt cgccggtttc cggcagctcg accttgacga cgtcggcgcc
      361 caggtcggcg agcagcatcg acgcggccgg cccggtgatg aacgtaccgt gctcgacgac
      421 gcgcaccccc tcgaggacct tgatcatgtg tgcccacccg gcgcaaagcc ctccggcacg
      481 gggccggtgt actcggcctc gcgtgtcgcc tggtacgaga gcgcgaagcc gatcggatcg
      541 gtgagttcct cgctcaggtg cgcgatcagg ctcgcggtgc gcgccagcat cggcacgccc
      601 ttcagcgcgt tgagcggaaa cccgacaccg agcagcaccg cgggtatcgc cgccgagacg
      661 ttcatccgca actccttgcc gacgacctcg gggatcactg cctccaccgc ttcggcgatc
      721 tcgacatggc gctgccctgc gccggcccgc gccgagacct cgaaaagcgc cgcgacacgc
      781 gggtcgcggg ccttgtgcag cgggtgaccg taccccggga tcgccttgcc ggcggcgcgc
      841 aaggccgcaa ccgcggcgcg cgcggcggcc ttcaggtcac caccgtgccg agccgcgccc
      901 tggtctactt cttcgaagag ccgtcctgcg gtttcggaag cgccgaggat caccgacccg
      961 gacccgagga tgcccgccgc gacagccccc tgcatcgcat cgggcgccgc cgcgagcgtc
     1021 atgcggctcg cctgcacgct gggcacgagg ccgtgctcgg cgatggcgac gagcgtcgcg
     1081 ttcagcaccg cgctggcggc agcgtcggga cgccggccgg tgagcaggaa gtagaagtaa
     1141 tcggcgaaac cgatctggcc gatcaggtcg gcgcacaggt cggcgccgcg cacgatgatg
     1201 cgatccgcat tcgaggtgct gatcgccgaa tggggcacgg tggccttgcc gatcttcaca
     1261 gcggcgtctc cagagagttg cgaccggcgc cgtgtcaggc tcgggcggcg agcgcctcgg
     1321 gcacgagccg aaagtcgtag tgcgcggtgt gataggggac gctcatcgtc cgaccgtcgg
     1381 gcgcggtgcc gggcggatgg gcctcgaact tcacgatcag gctgttgcgc acgccgaaga
     1441 ccgcatcgga atcgagatag gggctgtcgg cgacgaaaag gtgcgtcgtg accggctgat
     1501 gtccgggcgc gtacaccttc atgtggatat gaccgggccg gttcggatgc cggcccatcc
     1561 tgcgcagcat gtcaccgacc ggtccgtcgt cgggcaccgg atagaacgac ggccggatcg
     1621 accagaaacg gtagccgcct tcgctgtcgg tatgaaagcg cgcgcgcagc cgcatgccgg
     1681 cctcgtcgcc cagctgcatg tcgtagacac catcgccgtc acccgaccag acgtccaggc
     1741 agcagttcgc caccggcctg ccgcgcgtgt cggtgacccg cccggagtag taggccggct
     1801 cgcccggcat gccctggccg aggtcggcgc cgagttcgag ctcgggcgaa ccctcccagt
     1861 agaacggccc ctggaccgtc gcttcggtgg gcagcggcgc gccggcgctc gtcagcgcgc
     1921 gcgccgcctt cagctggttc agcgcgacga ccagcatcga gatgccgagc gtgtcggaaa
     1981 gcaggatgaa ttcctgccgc ttggcgtcgc acttcttgcc gacggcggtg aggaactcga
     2041 tcgcgccgat ccattcggcc tcggtcggct gcacctcgcg caggaaggcg tgggcgtgcc
     2101 tgaccagcgc ggtcatcacc gtcttaaagc gctcgtcggt gcaatcggcc atgcggtcga
     2161 tgaccgcctc ggtgatgtcg ccggcgtcga gttgtgccat gtctgtctcc tgtgttcggc
     2221 gacctgttgc gcgggtcgcc tcgaccgttc aatctatgct gcccgagcca gcggtggaag
     2281 tgatgaattt cgactgttat gatcgaccgc atcgatggaa ctccgacacc tgcgctactt
     2341 cgaggcgctg gccgaaacgc tcaacttcac gcgcgcggca cagcacctgc acgtcaccca
     2401 gtcgacgctc tcgcatcaga tcaagcagct cgaagaggag ctcggtcacc ccctcttcga
     2461 ccggaccacg aagaaggtcg cgatgaccga ggccggcgag gtgctgcgca gccacatggt
     2521 tccggccctg cagcagatcg accgcggggt tcaggcgctg cgcgacgatc cgccgatgct
     2581 gcagggcagc atccgcctcg gcaccacgca cagcttcaac acccggctgg taccgctgtg
     2641 cgtgtcgacc ttcctcgcga cttcgtcggc catccacatc agcgtcgacg agctcgcggc
     2701 gcgcgacatc gcgcgcggca tcgcgtcggg ccggctcgac ctcggcgtgt cgtaccgccc
     2761 ggacgaagct gccgggctct ggttcgaacc gctctacaac gaggagctgc gcctggtcgt
     2821 ctcgagccgg cacccgatgg cacgccgtcg ccgtgtgcgc atggtcgagc tgcatcgctg
     2881 ccggatggtg ctgctgccga acgcgttttc gacccgccag ctgctcgacg agtgcttcga
     2941 ggcggccggc gccgagccgg tcgtcgccgt tgaactcaat tcgatcgcgc cgatgatcga
     3001 gctgatccgg cagaccgatc tggccggcat catcgcggag actgcggtct cgaagtccga
     3061 gggtctgagt gttctgccgc tcgaag
//
LOCUS       DASVHM010000187         3004 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_951887, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000187 DASVHM010000000
VERSION     DASVHM010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3004
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_951887"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..439)
                     /locus_tag="VF308_03755"
     CDS             complement(<1..439)
                     /locus_tag="VF308_03755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014004590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX7435795.1"
                     /translation="MSDPAERLRQQLIRNFDTIEKSREQRAPLYDTLCARLARGTAAT
                     KLGMSIDIVAPGMRSCPYHSHYAQEEAFVILEGSGTLRVAGEMLALKAGDTVFIPSGP
                     AYPHQIINTSDAPLKYLSISTKDSPEVVEYPDSGKYLASATREG"
     gene            576..1385
                     /locus_tag="VF308_03760"
     CDS             576..1385
                     /locus_tag="VF308_03760"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEX7435796.1"
                     /translation="MTSLFVLLGIESWKPVLAVLLLPPIPLLLMVLVGARLMLPRRGL
                     GWFVIVVALALLWLSSCLGAAQILSQLRLRPPPALSFDRIKELKADIQARRPVAIVVL
                     GGGVEPYAPEYGVGNLGHASLERLRYGLWLARETGAPIAFSGGVGYAQSADALPEAQV
                     AARIAAQEFGRPLKWVEDSSRDTRENAARSIAMLKPAGIDHIVLVTHAWHMPRALRAF
                     REVAAGMQIEAAPMGLAKGVEARSLLWVPTSSGFSEMRNVLHELVGLAAGA"
     gene            complement(1443..>3004)
                     /locus_tag="VF308_03765"
     CDS             complement(1443..>3004)
                     /locus_tag="VF308_03765"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7435797.1"
                     /translation="DMKARLRQGAEGFFDSVSLEGRPSVAFFSKSAKYGWAFVIAVPQ
                     GSFGSSLSGSVLGVAIGALTLLVLAIVGAAWVARGIARPVYALQAAARSLEQGQVVEA
                     RPTGVVESDEVGATLAEASRKIAQARVELEERVDAAVRQTKDALEQLSQSQRLEALGQ
                     LTGGVAHDFNNLLAVIGNNAYVLQRAPAGHDASAQLGAIARAVQVGSRLTGHLLRFAR
                     RSEINPEVIDLGHQLPALTDMLKTALGSSIDVAMRVEPTTRMIECDSGELELALINLA
                     LNSRDAVAPGGEFIVVARNATAAEAAGLAAGEYVVIAVSDNGVGIAPEVIDHVFEPFF
                     TTKGLGKGTGLGLSQVYGFCTQAGGTARILATSAAGTTVLMLLPATTKTAAASPPVAD
                     PAPAPERRELLLVEDNDELGQATEALLTLFGYRVTRASSAEEAIELLDAGVTRFDVVL
                     SDVVMPGGMNGVSFAQYLQKNLPEMPIILITGYAAHLRNKHGFEILQKPCAPDVLLAA
                     LRRATGQPVAA"
BASE COUNT          446 a         1050 c         1011 g          497 t
ORIGIN      
        1 cgccttcgcg cgtcgccgag gccagatact tgcccgaatc ggggtattcg acgacctccg
       61 gactgtcctt cgtgctgatc gacaggtatt tgagcggcgc gtccgacgtg ttgatgatct
      121 ggtgcgggta ggccggcccg gacggaatga agaccgtatc gcccgctttc aaggcgagca
      181 tctcgcccgc cacccgcagc gttccgctgc cttcgaggat cacgaatgcc tcttcctgcg
      241 cgtagtggga gtgatacgga cagctgcgca tgccgggtgc gacgatgtcg atgctcatgc
      301 ccagcttcgt cgccgcggtg ccacgggcca ggcgcgcgca caacgtgtcg tagagcggtg
      361 cgcgctgttc gcggctcttc tcgatcgtgt cgaagttgcg gatcaattgc tggcgcagtc
      421 gctcggcggg gtcgctcatc gtggcctcgg cgttgcagga accgcatcat gcctcggcgc
      481 ccacttcgtc acgcttcggc atccagcccc cgggagccgt acggcacaat cgcgccccat
      541 cgaccgccag accggcggcg cttccggccc ttcgcgtgac cagcctcttc gtccttctcg
      601 gcatcgaatc ctggaagccc gtgctcgcgg tcttgctgct gccgccgatc ccgctgctcc
      661 tgatggtgct ggtcggggcg cgcctgatgc tgccgcggcg cgggctcggc tggttcgtca
      721 tcgtcgtggc cctcgcgctg ctgtggctca gcagctgcct gggcgccgcc cagatcctct
      781 cgcagctgcg gctgcggccg cccccggcac tgagtttcga ccgcatcaag gaactgaagg
      841 cagacattca ggcccggcgc ccggtcgcga tcgtcgtgct cggcggcggc gtcgagccct
      901 acgcgcccga gtacggtgtg ggcaacctcg ggcacgcttc cctcgaacgc ctgcgctacg
      961 gtctttggct ggcccgcgaa accggcgcgc cgattgcatt cagcggcggc gtcggctacg
     1021 cccagtcggc cgatgcactg ccggaggctc aggtcgccgc ccggatcgcg gcccaggaat
     1081 tcggccgacc gttgaaatgg gtcgaagaca gttcgcgcga cacgcgcgag aacgcggccc
     1141 gcagcatcgc gatgctcaag cccgcgggca tcgaccacat cgtgctggtg acccacgcct
     1201 ggcacatgcc gcgcgcgctg cgcgcgttcc gcgaagtggc cgcgggcatg cagatcgaag
     1261 ccgcgccgat ggggttggcc aagggcgtcg aagcgcgctc actcctctgg gtaccgacgt
     1321 cgtccgggtt cagcgaaatg cgcaacgtcc tgcacgaact cgtcggtctc gcggccggcg
     1381 cctgagggtc gggtgctcct tgcgaagcga ataacgcaga cctgagccga gctctcgcag
     1441 cctcaagccg cgacgggctg tcctgtcgcg cggcgcagag cggcgagcag cacgtccggc
     1501 gcgcatggct tctgcaatat ctcgaagccg tgcttgttgc gcaggtgcgc ggcataaccg
     1561 gtgatgagga tgatcggcat ctcgggcagg ttcttctgca gatactgggc aaagctcacg
     1621 ccattcatgc cccccggcat cacgacgtcg gacagcacca cgtcgaagcg cgtgacaccg
     1681 gcatcgagca gttcgatcgc ctcctcggcg ctgctcgccc gcgtgacccg gtaaccgaac
     1741 agcgtcagca aggcctcggt cgcctggccg agctcgtcgt tgtcttcgac gagcagcagt
     1801 tcgcggcgtt cgggtgcggg cgcaggatcg gcaaccggcg gcgacgccgc ggccgtcttc
     1861 gtcgtggccg gcaacaacat caacaccgtg gtgccggccg ccgaggtcgc gaggatgcgc
     1921 gccgttccgc ccgcctgggt gcaaaagcca tagacctggc tcaggccgag gccggtgccc
     1981 ttgccgagcc ccttggtcgt gaagaaaggc tcgaacacat ggtcgatcac ctcgggcgcg
     2041 atgccgaccc cgttgtcgga cactgcgatc acgacgtact cgcctgcggc gaggccagcc
     2101 gcctcggccg cggtcgcatt gcgggcgacg acgatgaatt cgccccccgg cgcgacggcg
     2161 tcgcgagagt tcaacgcgag gttgatcaag gcgagctcga gctcgccgga atcgcattcg
     2221 atcatgcgcg tggtcggctc gacgcgcatc gcgacgtcga tcgacgagcc gagcgccgtc
     2281 ttcagcatgt cggtgagcgc cggcaactgg tgccccagat cgatgacttc gggattgatc
     2341 tcgctgcgcc gcgcgaaccg cagcaggtga ccggtgaggc ggctgccgac ctgcaccgcg
     2401 cgcgcgatcg cgccgagctg cgccgaggcg tcatggccgg ccggggcacg ctgcagcacg
     2461 tacgcgttgt tgccgatcac cgcgaggagg ttgttgaaat cgtgcgcgac gccgccggtc
     2521 agctggccga gggcttcgag gcgctggctc tgcgacagct gctcgagcgc gtccttggtc
     2581 tggcgcaccg cggcgtccac ccgttcttcg agttcgacgc gagcctgcgc gatcttgcga
     2641 ctggcctcgg ccagcgtcgc gccgacctcg tcgctttcga cgacgccggt gggccgggcc
     2701 tcgaccacct gaccctgctc gagactgcgc gccgccgcct ggagcgcata caccggccgg
     2761 gcgattccgc gcgcgaccca ggctgcgccg acgatcgcaa ggacgagcag cgtgagcgcg
     2821 ccgatggcca cgccgaggac cgagccgctg aggctgctgc cgaacgaacc ctgcggcaca
     2881 gcgatcacga aggcccagcc atactttgcc gacttgctga agaacgccac gctcggccgc
     2941 ccctcgagcg agacggagtc gaagaatccc tcggcgccct gcctcagccg tgccttcatg
     3001 tcct
//
LOCUS       DASVHM010000188         4945 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_952012, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000188 DASVHM010000000
VERSION     DASVHM010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4945
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_952012"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2029
                     /locus_tag="VF308_03770"
     CDS             <1..2029
                     /locus_tag="VF308_03770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007853155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7435798.1"
                     /translation="TSTRSAAVLPAQVELGRVEAGAVTASTAAPVDLPAIDWSRFATG
                     GPKGGRVAERGLGASQAAVRVGAPLLDRLVNLAGEVSITRSRVEVGVNQIKSSLGDLT
                     ENLERLRGQLREIEIQGETQMTSRLEAAKAAAQTFDPLEFDRFTRFQEVTRMMAESVN
                     DVATVQRSLQRSLETTEDELVAQARMTRDLQDDLLRTRMVEFEGLSDRLYRVVRQAAK
                     ETGKQVRLDIVGGSIEIDRGVLDRMTGAFEHLLRNCVTHGIETPEKRVAAGKDATGSI
                     IVALAHEGNEVGVEFRDDGAGLDLERIRTKGLEMGLFDAAAAPSDMELANLIFAPGFS
                     TATTVTELAGRGVGMDVVRSDVVTMGGRIETATEAGKGTSFRLILPLTTAVTRVVMLR
                     CGDTTVAVPSTLVETVRRATQQEIDEAYASGTYVLGDKALQFFWLGALLQISSRPGET
                     LGRSRYVVVVRSAQQRIVVHVDEVVGNQEVVVKNLGPQLSRLPGLAGMTLLASGAVAL
                     IYNPVALATLYGESARAATNAALRAPSQAPALPGAAEREEPAAPLVLVVDDSLTVRRV
                     TQRLLLREGFRVALAKDGLDALERLAEEKPRIVLSDIEMPRMDGFDLVRNIRADARLR
                     DLPVIMITSRIAQKHRDHAIELGVDHYLGKPYSEEDLLALIARYTAHAARA"
     gene            complement(2046..3536)
                     /locus_tag="VF308_03775"
     CDS             complement(2046..3536)
                     /locus_tag="VF308_03775"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003904 - deoxyribodipyrimidine
                     photo-lyase activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HEX7435799.1"
                     /translation="MDKPLATALVWLRRDLRADDHAALYHALKAARQVWCAFVFDRDI
                     LDPLPRADRRVEFIRDAVLEVSEALERLAAGHGTAGVRLIAAHGSAPAEIVRLAQALH
                     VQAVYANHDDDPAALHRDAKVRGALADLGIALHTSKDHVVFERNEVLTLSGNPYSVYT
                     PYRTGWLNKLEPFFLRAYPVERHAASLAPVPDEIGGAVPALDELGFAKTNLHELRLAP
                     GSAGAHALLGDFLHRIDDYEAARNFPAVKGPSYLSVHLRFGTISIRELARRAVERIEA
                     SPQPARRGVEVWLSELIWRDFYHQLLHHHPQVVTHSFRPEYDRIRWEHGKTAEAHFAA
                     WCEGRTGYPLVDAAMAQINQTGYMHNRLRMVSASFLVKDLGIDWRWGERYFAEKLIDY
                     DLAANNGGWQWAASTGSDAQPWFRIFNPVTQSEKFDPEGRFIRRYLPPLAALPDEFIH
                     APWRARPIDLASANLELGRDYPAPVVDHEEARKRTLARFGAIKAAL"
     gene            3595..4173
                     /locus_tag="VF308_03780"
     CDS             3595..4173
                     /locus_tag="VF308_03780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HEX7435800.1"
                     /translation="MAATSINLTNQFLIAMPGMGDGTFAGTVVYLCEHTEKGALGLVI
                     NKPIDIKLKNLFEKVELSLEREDLADEPVYFGGPVQTERGFVLHERLGEEGGHYNSSL
                     QIQGGLEMTTSKDVLEALSNGAGPKKVLVTLGYSGWGAGQLEEEMGRNGWINVGAERG
                     IIFDTPVEERYDKALSLLGIDARMLSQEAGHA"
     gene            4199..4636
                     /gene="ruvX"
                     /locus_tag="VF308_03785"
     CDS             4199..4636
                     /gene="ruvX"
                     /locus_tag="VF308_03785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEX7435801.1"
                     /translation="MSAVVLAPAAHKHLSFLAFDFGTKRVGVAAGNTLTRSARPLATV
                     AAGATPPFEAIGKLITEWQPDALLVGVPLHPDGAAHENTRRARRFARQLHGRFQLPVH
                     EVDERYTTTEARARGARDLDAAAAAIILEQFLREHAMDGASPS"
     gene            4633..>4945
                     /locus_tag="VF308_03790"
     CDS             4633..>4945
                     /locus_tag="VF308_03790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEX7435802.1"
                     /translation="MSALHLDAEALYAELAAAVRGLVQPGAVLVGIWSGGAWLAERLQ
                     RDLKLPGEHGVITSALHRDDFSSRGLAASTDHTRLPFEVEGRHIVLVDDVLYTGRTIR
                     AV"
BASE COUNT          778 a         1667 c         1747 g          753 t
ORIGIN      
        1 cacatccacg cgaagcgccg cagtccttcc ggctcaggtc gaactcgggc gtgtggaggc
       61 cggcgcggtc accgcgagca ccgccgcacc ggtcgacctg ccggcgatcg actggtcgcg
      121 ctttgcgacc ggtggcccga aggggggtcg ggttgcggaa cgcggcctgg gtgcttccca
      181 ggccgccgtg cgcgtcggcg cgccgctgct cgatcgtctc gtcaacctcg ccggcgaggt
      241 gagcatcacc cgatcccgcg tcgaggtcgg cgtgaaccag atcaagagtt cgctcggcga
      301 cctgaccgag aacctggaac gcctgcgcgg gcagctgcgc gaaatcgaga tccagggcga
      361 gacgcagatg acctcccgcc tcgaggccgc caaggccgcg gcacagacct tcgatccgct
      421 cgagttcgac cgtttcacgc gcttccagga agtgacccgg atgatggcgg agtcggtcaa
      481 cgacgtcgcc acggtgcagc gctccctgca gcgttcgctc gagaccacgg aggacgaact
      541 ggtggcgcag gcgcgcatga cgcgcgatct ccaggacgac ctgctgcgca cgcgcatggt
      601 cgagttcgaa ggcctctccg accggctcta ccgcgtcgtg cggcaggccg cgaaggagac
      661 cggcaagcag gtgcggctcg acatcgtcgg cggctcgatc gaaatcgatc ggggtgtgct
      721 cgaccgcatg accggcgcct tcgaacacct gctgcgcaac tgcgtcactc acggcatcga
      781 gacgcccgag aaaagggtcg cggcgggcaa ggatgcgacc ggttcgatca tcgtcgcgct
      841 cgcgcacgag ggcaacgagg tcggcgtcga attccgcgac gacggcgcgg ggctcgacct
      901 cgagcgcatc cgcacgaagg gcctcgagat gggcctcttc gacgcagccg ccgcgccgag
      961 cgacatggaa ctcgccaacc tgatcttcgc gccgggcttt tcgaccgcga cgaccgtcac
     1021 cgagcttgcc ggccgcggcg tcggcatgga cgtggtgcga tccgacgtgg tcaccatggg
     1081 cgggcgcatc gagactgcga ccgaagcggg caagggcacc tccttcaggc tgatcctgcc
     1141 gctcacgacc gcggtcacgc gggtggtgat gctgcgctgc ggcgacacca ccgtcgcggt
     1201 gccctcgacg ctggtcgaga cggtgcgccg ggcgacgcag caggaaatcg acgaggctta
     1261 cgccagcggc acctacgtgc tcggcgacaa ggcgctgcag ttcttctggc tcggggcgct
     1321 gctgcagatc agctcgcgcc ccggcgagac gctcgggcgc tcgcgctacg tcgtcgtcgt
     1381 gcgcagcgcg cagcagcgca tcgtggtcca cgtcgacgaa gtcgtcggca accaggaagt
     1441 cgtggtcaag aacctcgggc cgcagttgtc gcgcctgccg ggcctggcgg gcatgacctt
     1501 gctcgcctcg ggtgcggtgg cgctgatcta caacccggtc gcgcttgcca cgctctatgg
     1561 cgaaagcgcc cgcgcggcga cgaacgccgc gctgcgcgcg ccgtcgcagg caccggcact
     1621 gcccggtgcc gccgagcgcg aggagccggc cgcgccgctc gtgctcgtcg tcgacgattc
     1681 gctcaccgtg cgccgggtca cgcagcgcct gttgctgcgc gagggctttc gcgtggcgct
     1741 ggccaaggac ggtctcgatg cgctcgaacg ccttgccgaa gagaagccgc gcatcgtgct
     1801 ctccgacatc gaaatgccgc gcatggacgg cttcgacctg gtgcgcaaca tccgcgccga
     1861 tgcgcgcctg cgcgacctgc cggtcatcat gatcacctcg cggatcgcgc agaagcatcg
     1921 cgaccatgcg atcgaactcg gcgtcgacca ctacctcggc aagccctact ccgaggaaga
     1981 cctgctcgcc ctgatcgcgc gttacaccgc gcacgcggcc cgcgcctgat tcggcgcgtc
     2041 gccgctcaga gggccgcctt gatcgcgccg aagcgggcga gcgtgcgctt gcgcgcctcc
     2101 tcgtggtcga cgaccggagc cgggtagtcg cgccccagct ccaggttggc gctcgcgagg
     2161 tcgatgggcc gggcccgcca tggcgcgtgg atgaactcgt cgggcaaggc ggcgagcggc
     2221 ggcagatagc gtcggatgaa gcgcccttca gggtcgaact tctcgctttg cgtgaccggg
     2281 ttgaagatcc ggaaccacgg ctgcgcatcg ctgccggtcg aggccgccca ttgccagccg
     2341 ccgttgttgg cggcgaggtc gtagtcgatc agtttctcgg cgaagtagcg ctcgccccaa
     2401 cgccagtcga tgccgaggtc cttgacgaga aagctcgcgc tcaccatgcg caggcggttg
     2461 tgcatgtagc cggtctggtt gatctgcgcc atcgccgcgt cgacgagcgg atatccggtg
     2521 cggccttcgc accaggcggc gaaatgcgcc tcggccgtct tgccgtgctc ccagcggatg
     2581 cggtcgtact cgggccggaa gctgtgcgtc accacctgcg ggtggtggtg caggagctgg
     2641 tgatagaagt cgcgccagat cagttccgag agccagactt cgaccccccg cctggccggc
     2701 tgggggctgg cttcgatgcg ctcgacggcc cggcgcgcca gctcgcggat cgagatcgtg
     2761 ccgaagcgca ggtgcaccga cagatagctc ggccccttga ccgcgggaaa gttgcgcgcc
     2821 gcttcgtagt cgtcgatccg gtgcaggaaa tcgccgagca gcgcgtgtgc gccggcgctg
     2881 ccgggggcga gcctgagctc gtgcaggttc gtcttcgcga agccgagctc gtccagtgcg
     2941 gggaccgcgc cgccgatctc gtcgggcacg ggcgcgaggc tcgccgcatg ccgctccacg
     3001 gggtaggcgc gcaggaagaa cggttcgagt ttgttcagcc agccagtcct gtacggcgtg
     3061 tagacgctgt agggattgcc gctcagggtg agcacctcgt tgcgctcgaa cacgacatga
     3121 tccttcgagg tgtgcagggc gatgccgagg tcggccagcg caccgcggac cttggcgtcg
     3181 cgatgcaggg ccgcggggtc gtcgtcgtgg ttcgcataga ccgcctggac gtgcagcgcc
     3241 tgcgcaagcc ggacgatctc ggccggcgcc gaaccatgag cggcaatcag ccggacgccg
     3301 gccgtgccgt ggccggcggc gagcctttcg agcgcctccg agacctcgag caccgcgtcg
     3361 cggatgaact cgacgcgccg gtcggcgcgg ggcaggggat cgagaatgtc gcggtcgaag
     3421 acgaaggcgc accagacctg ccgcgcggcc ttcagggcgt ggtagagcgc cgcgtggtcg
     3481 tcggcgcgca ggtcgcggcg aagccagacg agggcggtgg cgagaggctt gtccatggtt
     3541 agaacctagg ggttctggtc cccacggagt ttgccgcagg aataaaatgg gctcatggcg
     3601 gccacttcga tcaacctgac gaaccagttc ctgattgcca tgccgggcat gggcgacggc
     3661 acgtttgcag gaaccgtggt ctacctctgc gagcacaccg agaagggggc gctcgggttg
     3721 gtcatcaaca agccgatcga catcaagctg aagaacctgt tcgaaaaggt ggagctctcg
     3781 ctcgagcgcg aagacctggc cgacgagccg gtctacttcg gcgggccggt gcagaccgag
     3841 cgcggcttcg tgctgcacga gcgcctgggc gaggaaggcg gccactacaa ctcgtcgctg
     3901 cagatccagg gcggcctcga gatgacgacc agcaaagacg tgctggaggc tctctccaac
     3961 ggcgccgggc cgaagaaggt gctggtcacc ctggggtaca gcggctgggg tgccgggcag
     4021 ctcgaggaag agatggggcg caacggctgg atcaacgtcg gcgccgagcg cggcatcatt
     4081 ttcgacacgc cggtcgagga gcgctacgac aaggcactgt cgctgctcgg catcgatgcc
     4141 cgcatgctga gccaagaggc ggggcacgca tgaatccgcg cagccctctt gccgactgat
     4201 gtctgccgtg gtcctcgcac cggccgctca caagcatctc tcgtttctgg ctttcgattt
     4261 cggcacgaaa cgcgtcggcg tcgccgcggg caacacgctg actcgcagcg cccggccgct
     4321 cgccaccgtc gcggccggcg cgacaccgcc gttcgaggcg atcggcaagc tcatcaccga
     4381 atggcagccg gatgccctgt tggtcggtgt gccgttgcac ccggacggcg cggcgcacga
     4441 gaacacgcgg cgcgcacgcc gcttcgcgcg ccagttgcac ggccgcttcc agctgccggt
     4501 gcacgaggtc gacgagcgct acaccacgac cgaagcgcgg gcgcggggcg cgcgcgacct
     4561 cgatgccgcg gcggccgcga tcatcctgga gcagtttctg cgggagcacg cgatggacgg
     4621 ggcttcaccc tcatgagcgc actgcacctc gacgcggagg cgctctacgc cgaactcgcc
     4681 gcggccgtcc gcggcctggt ccagccgggc gccgtcctgg tcggcatctg gtcgggcggg
     4741 gcatggctcg ccgaacgctt gcagcgcgat ctgaagctgc ccggcgaaca cggcgtgatc
     4801 acgagcgcgc tgcatcgcga cgacttctct tcgcgcggcc tcgccgcgag caccgatcac
     4861 acgcggctgc cgttcgaggt cgaaggccgg cacatcgtgc tcgtcgacga cgtgctctat
     4921 acgggacgga ccatccgtgc cgtca
//
LOCUS       DASVHM010000189         2658 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1383376, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000189 DASVHM010000000
VERSION     DASVHM010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2658
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1383376"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..827
                     /locus_tag="VF308_03795"
     CDS             <1..827
                     /locus_tag="VF308_03795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HEX7435803.1"
                     /translation="ISARHDLGAVSGLEVAQQQALLDTTLAQVDPLRRQRGVFEHALA
                     TLTGTAAPVFALAPDLRDVAPPALPIGVPSDVLERRPDVASAERAMALANAQIGVATA
                     AFYPSITLAPSLGAESRALSSLFDAPSLLWSIGVSLTQPLLDAGRLKANVDFARAGYE
                     ATVGNYRRVVLTAMQEVEDGITGVATLESAAQQAGTAVASARRVLDLAKARYEGGAST
                     YLDLITAQQALLASERLAAQLRGQRLLASVFLVKALGGDWERVPKLATNEVPPGPR"
     gene            complement(852..1190)
                     /locus_tag="VF308_03800"
     CDS             complement(852..1190)
                     /locus_tag="VF308_03800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435804.1"
                     /translation="MKRYWLIRAFKVALFAVVALGAVGLVTMGLWNWLAPDLFGGHTI
                     GFLQALGLFALCRLLIGGLRGHGGRRMHWRHRMAERWDGMSEEERTKVRESMRGRCGH
                     GHADPAQDTA"
     gene            complement(1192..1752)
                     /locus_tag="VF308_03805"
     CDS             complement(1192..1752)
                     /locus_tag="VF308_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016836218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX7435805.1"
                     /translation="MAEQDRRIADAFLREGGRLRGFIRNRVAAPADVEDILQDVFFEL
                     VEAARLVKPIEHTGAWLFSVARNRITDLFRKRRTDPPAPQSPDAEDTEPALEDLLPAP
                     DAGPEAAYARRLFLEALDEALDELPAAQRDVFIAHELEGRSFKELARETGLGVNTLLS
                     QKRYAVLHLRRRLQAIHAEFIDNRGA"
     gene            1919..2257
                     /locus_tag="VF308_03810"
     CDS             1919..2257
                     /locus_tag="VF308_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013899994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435806.1"
                     /translation="MSAPKLESVKTRLENVIALARLLERVERSTVAPHPDQYRALVRQ
                     LGAALEADLPHDALQAVLGAHPATAELYENLHYEKSGLSRSPLERSIATEMLTSQALH
                     RIARGAQKKS"
     gene            complement(2265..>2658)
                     /locus_tag="VF308_03815"
     CDS             complement(2265..>2658)
                     /locus_tag="VF308_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006158810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEX7435807.1"
                     /translation="GRELDSLADVVSFGVAPAALAFAAGMNGGWDALVLGYFVCCGVS
                     RLARYNVTAETLSAGTDKVAYFEGTPIPTSVLLTALLAFAAWQGRVESALYGGVLALG
                     PWQLHPLVLLFGVSGTLMISKTLRIPKL"
BASE COUNT          423 a          950 c          903 g          382 t
ORIGIN      
        1 tgatctcggc ccgtcacgat ctcggcgccg tctcgggcct cgaggtcgcc cagcagcagg
       61 ccctgctcga cacgaccctg gcgcaggtcg acccgctgcg gcgccagcgt ggcgtcttcg
      121 agcatgcgct cgcgaccttg accgggaccg cggctccggt cttcgccctg gcgccggact
      181 tgcgcgatgt cgcgccgccg gcgctgccga tcggcgtgcc ctccgacgtc ctggagcgcc
      241 gccccgacgt ggcctcggcc gagcgcgcga tggcgctcgc caatgcgcag atcggcgtcg
      301 ccacggcggc gttctacccg agcatcacgc tggcgccgtc gctgggcgcc gagagccgcg
      361 cgctgtcgag cctgttcgat gcgcccagcc tcttgtggtc gatcggcgtc tcgttgacgc
      421 agccgctctt ggacgccggc cgcctgaagg cgaacgtcga tttcgcgcgc gccggctacg
      481 aggccactgt cggcaactac cgtcgcgtcg tgctgaccgc gatgcaggaa gtcgaagatg
      541 gcatcaccgg tgtcgccacg ctcgaaagcg cagcgcagca ggccggcacc gcggtcgctt
      601 cggcgcggcg cgtgctcgac ctggcgaagg cccgctacga gggcggcgcg tcgacctacc
      661 tcgacctcat caccgcgcag caggcgctcc tcgccagcga gcgccttgcc gcccagctgc
      721 gcggccagcg cctgctggca tcggtattcc tggtgaaggc gctgggcggc gattgggagc
      781 gcgtgccgaa gctcgccacc aacgaagtcc ctccaggccc tcgatagaag ggtcgtcgac
      841 gcggcgggcc gctacgccgt gtcctgcgcc gggtccgcgt gtccgtgccc gcagcgcccg
      901 cgcatcgact cgcgcacctt cgtgcgctct tcctcgctca tgccgtccca gcgctcggcc
      961 atgcgatggc gccagtgcat gcggcgcccg ccgtgcccgc gcagaccgcc gatcagaagg
     1021 cgacagagcg cgaagaggcc gagcgcctgc aggaagccga tcgtgtgacc cccgaacaga
     1081 tcgggcgcga gccagttcca caggcccatc gtcaccagcc cgaccgcgcc gagcgcgacc
     1141 acggcgaaga gcgccacctt gaatgccctg atcagccaat atctcttcat gtcatgctcc
     1201 tcggttgtcg atgaattcgg cgtggatcgc ctgcaggcgc cggcgcaggt gcagcaccgc
     1261 atagcgcttt tgcgacagca gcgtgttgac gcccagcccg gtctcgcggg ccagctcctt
     1321 gaagctgcgg ccctcgagtt catgggcgat gaaaacgtcg cgctgggctg ccggcagctc
     1381 atcgagggcc tcgtcgagcg cctcgagaaa gaggcgccgt gcatatgcgg cctcgggccc
     1441 cgcgtcgggc gcgggcagca ggtcttcgag cgcgggctcc gtgtcttcgg cgtcggggct
     1501 ttggggcgcc ggcgggtccg tgcgacgttt gcgaaacagg tccgtgatgc ggttgcgggc
     1561 gacgctgaag agccaggccc cggtgtgctc gatcggcttg accaggcgcg ccgcctcgac
     1621 cagttcgaag aacacgtcct ggaggatgtc ctcgacgtcg gccggtgcgg cgacccggtt
     1681 gcggatgaac ccgcgcaagc ggccgccctc gcgaaggaag gcgtcggcga tccggcgatc
     1741 ctgttcggcc atcccccgat tcaagcccac attcgcgtcc ataccgtggg aagacgcacg
     1801 agaggcccgg atattgtgaa agggcgttgc cgataacaac aggccagact tgaacttgag
     1861 gccagcgacc aaacgtggga accaacgcgg cacccgcccg acgccaggaa agcacctcat
     1921 gtccgccccg aaactcgaat ccgtcaagac ccgactcgaa aacgtgatcg cgctggcacg
     1981 cttgctggag cgcgtcgagc gcagcaccgt cgcgccccac cccgaccagt accgcgcgct
     2041 ggtgcgccag ctcggcgccg cgctcgaggc ggatctgccg cacgatgccc tgcaggcggt
     2101 gctcggcgcg cacccggcca cggccgagtt gtacgagaac ctgcactacg agaaatcggg
     2161 cctttcgcgc tcgccgctcg agcgctcgat cgcgaccgag atgctgacca gccaggcgct
     2221 gcatcgcatc gcgcgcggcg cgcagaagaa gagctgagag ggccctagag cttcggaatc
     2281 cgcagcgtct tgctgatcat cagcgtgccc gacacgccga aaagcagcac caacgggtgc
     2341 agttgccagg ggccgagtgc gagcacgccg ccgtagagcg cgctctcgac gcgcccttgc
     2401 catgcggcga aggcgagaag cgcggtaagc agcacgctgg tcgggatcgg cgtgccctcg
     2461 aaatacgcga ccttgtcggt gccggccgag agcgtctcgg cggtgacgtt gtagcgcgcc
     2521 aggcgcgaca cgccgcagca cacgaagtag cccagcacga gcgcgtccca gccgccgttc
     2581 atgcctgcgg caaaggcaag cgccgccggc gcaacgccga acgagaccac gtcggcgagc
     2641 gaatcgagtt cgcggccg
//
LOCUS       DASVHM010000190         3071 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1095531, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000190 DASVHM010000000
VERSION     DASVHM010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3071
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1095531"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VF308_03820"
     CDS             <1..414
                     /locus_tag="VF308_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011658888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEX7435808.1"
                     /translation="GSALAARALAPACKVYGVEPEAGNDGQQSFRNGRIVTIETPRTI
                     ADGAQTLHLGEHTFPIIRRDVADIFTATDAELVDAMRFFAERMKIVVEPTGALGYAAA
                     RRMGAELAGQRVGVIISGGNVDLKRFAELIGAARN"
     gene            512..910
                     /locus_tag="VF308_03825"
     CDS             512..910
                     /locus_tag="VF308_03825"
                     /inference="COORDINATES: protein motif:HMM:TIGR00377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX7435809.1"
                     /translation="MHLQIATRHVADTVIAMPVGRIDHQSAAQFEAALAPLVAAAAAG
                     RGALVLDFSRIDYISSVGLRVLMIAAKQMREREARLLVAALQSVVAEIFAISRFDRIL
                     TVTATLDEAMALCSPAALAQYRSTPSSPPP"
     gene            907..1863
                     /locus_tag="VF308_03830"
     CDS             907..1863
                     /locus_tag="VF308_03830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020703082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7435810.1"
                     /translation="MKGVRFWGTRGSLPVALTALDVRNKLLATLRAARGRSLAAEPDL
                     EAILVGLPFAVAGTYGGHSSCVQLDTGGPEYFVCDMGSGLRPFGQAAMSRRNGAAQTF
                     HIFLSHLHWDHIMGLPFFVPAFIPGNRVVIYGSHGELEAALRRQQDKPSFPVDFSIFG
                     AKMEFVHLEPGRTREIAGVAVTSMLQRHGGDSYGYRFESQGKVVVYSTDSEHPLAQAE
                     HAERFVRFFRGADLVIFDAMYSLADAISVKADWGHSSNIVGVELCQMAEARHLCLFHH
                     EPVFDDAAIDAVLAETRRLEEITRGATPLHVSAAFDGMEIAL"
     gene            1860..>3071
                     /locus_tag="VF308_03835"
     CDS             1860..>3071
                     /locus_tag="VF308_03835"
                     /inference="COORDINATES: protein motif:HMM:NF017076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE2 domain-containing protein"
                     /protein_id="HEX7435811.1"
                     /translation="MTAPAERMAAAGRVDRIGLVGVALSLAFAALTWLQPAWADRLQS
                     AWFDAYQSLAPRQVSVLPVTVVEIDQKSLAAVGQWPWPRTQLARLVSTVNRADAAAIG
                     LNILMPEADALSPERLLTESTVQDRSVVAALRSLISHDAVLAGALASSPSVLAFVGTS
                     EATRTPLRAAPITVQTKRADGDAAELAIARHAGALTSIDELNRQASGWGLISVDPTRG
                     IVRRIPLVASVQGTLVPALAIEMLRVAYRAPSIRLTAAGASVTGLDVGAVRLRTEKDG
                     AVRVYYSRHRADRFVSAIDVLEDRVDPALLRKQMVLIGPTAFGLQELQDTPIGERMSG
                     SEIQAQLLENLLDGTLLHRPRWAPGVEALLVLVFGSILVWAMRRLHPLTAALLMLVLV
                     ALPVLGAFGLYR"
BASE COUNT          418 a         1108 c         1049 g          496 t
ORIGIN      
        1 ggctcggccc tggcggcgcg cgcgctggca ccggcgtgca aggtctacgg cgtcgagccc
       61 gaggccggca acgacggcca gcagtcgttt cgcaacggca ggatcgtcac catcgagacg
      121 ccgcgaacga tcgccgacgg cgcgcagacg ctgcacctcg gcgagcacac ctttccgatc
      181 atccgccgcg acgtcgccga catcttcacc gcgaccgacg ccgagctcgt cgacgcgatg
      241 cgcttcttcg ccgagcggat gaagatcgtc gtcgagccga ccggtgcgct cggctacgcc
      301 gccgcgcggc ggatgggtgc cgagctcgcc gggcagcgcg tcggcgtgat catcagcggc
      361 ggcaacgtcg atctgaagcg gttcgccgag ctgatcggtg cggcgcgcaa ctgagcgacg
      421 ccaggttcga gcggcttcgc gacgccttgc cggcgcccta tactgacctc gacctgcctg
      481 cccgcggaac gacaggccac ctcgaggacg gatgcacttg cagatcgcaa cgcgccacgt
      541 cgccgacacc gtcattgcca tgcccgtggg ccgcattgac catcaaagcg ctgcgcaatt
      601 cgaggcggcg ctggcgccgc tggtggccgc ggcggctgcc ggccggggcg cgctggtgct
      661 cgacttttcg cggatcgact acatcagcag cgtcggcctg cgcgttctga tgatcgccgc
      721 caagcagatg cgcgagcgcg aggcgcgcct tctcgtcgcg gcgttgcaga gcgtcgttgc
      781 cgagatcttc gccatcagcc ggttcgaccg catcctcacc gtgacggcca cgctcgacga
      841 ggcgatggcg ctgtgctctc cggccgcgct cgcgcagtac cggagcacgc cttcttctcc
      901 gccgccatga agggggtccg gttctggggc acccggggct cgctcccggt ggccctgacc
      961 gcgctcgatg tccgcaacaa gctgctcgcc acgctgcgcg cggcgcgcgg ccgctccctc
     1021 gccgccgagc ccgacctcga ggcgattctc gtgggcctgc cgttcgcggt ggcgggcacc
     1081 tacggcggac acagctcgtg cgtccagctc gacaccggcg gccccgagta tttcgtctgc
     1141 gacatgggca gcggcctcag gcccttcggc caggccgcga tgagccggcg caacggtgcc
     1201 gcgcagacct tccacatctt cctgtcgcac ctgcactggg accacatcat ggggctgccg
     1261 ttcttcgtgc cggccttcat cccgggcaac cgggtcgtga tctacggcag ccacggggag
     1321 ctcgaagcgg cgctgcggcg gcagcaggac aagccgtcgt tcccggtcga cttctcgatc
     1381 ttcggcgcga agatggagtt cgtccacctc gagccgggcc gtacccgcga gatcgccggc
     1441 gtcgccgtga cctcgatgct gcaacggcac ggcggcgatt cctacggcta ccgcttcgaa
     1501 tcgcaaggca aggtcgtggt gtattcgacc gattccgagc atccgctggc gcaggccgag
     1561 catgccgagc gcttcgtgcg cttctttcgc ggcgccgacc tcgtcatctt cgacgccatg
     1621 tactcgctcg ccgatgccat ctcggtcaag gccgactggg gccattcgag caacatcgtc
     1681 ggcgtcgagc tgtgccagat ggccgaagcg cgccacctgt gcctgttcca ccacgagccg
     1741 gtcttcgacg atgcggccat cgacgccgtg ctggcggaaa cccgccgcct cgaggaaatc
     1801 acgcgcggcg cgacccccct gcacgtcagc gccgccttcg acgggatgga aatcgcgctg
     1861 tgacggcgcc cgccgagcgc atggcggcgg cgggcagggt ggatcgcatc gggctcgtcg
     1921 gtgtcgccct gagcctggcc ttcgcggctc tcacgtggct gcagccggcg tgggccgacc
     1981 ggctgcagtc ggcgtggttc gacgcctacc agtcgcttgc gccgcggcag gtcagcgtgc
     2041 tgcctgtcac cgtcgtcgag atcgaccaga agagcctcgc tgccgtcggc caatggccgt
     2101 ggccgcgcac gcagctggca cggctggtga gcacggtcaa ccgcgccgac gcagcggcga
     2161 tcgggctgaa catcctgatg cccgaggccg acgcgttgtc gcccgagcgg ctgttgaccg
     2221 agtcgaccgt ccaggacaga tccgtggtcg ccgcgctgcg atccttgatc tcgcacgatg
     2281 ccgtgctcgc cggcgcgctc gcttcgtcgc cgtcggtgct cgcgttcgtg ggaacgagcg
     2341 aggcgacgcg aacgccgttg cgggcggcgc cgatcaccgt ccagacgaag cgagccgatg
     2401 gcgacgccgc cgagctggcg atcgcccggc acgccggtgc gctgaccagc atcgacgaat
     2461 tgaaccgtca ggccagcggc tggggcctga tctcggtcga ccccacccgc ggcatcgtcc
     2521 ggcgcattcc tctcgtcgcc agcgtccagg gcacgctggt gccggccctc gccatcgaga
     2581 tgctgcgcgt cgcctaccgc gcgccttcga tccggctgac cgcggccggc gcgtcggtga
     2641 ccggcctcga cgtgggcgcg gttcgcctgc gcaccgagaa ggacggggcg gtgcgcgtgt
     2701 actactcgcg ccatcgtgcc gatcgcttcg tctcggcgat cgatgtcctc gaggaccggg
     2761 tcgacccggc actgctgcgc aagcagatgg tgctgatcgg gccgaccgcg ttcggcctgc
     2821 aggagctcca ggacacgccg atcggcgagc ggatgtccgg cagcgagatc caggcgcagt
     2881 tgctggaaaa cctcctcgac gggacgctgc tgcaccggcc gcgatgggcg ccgggggtcg
     2941 aggcgcttct cgtcctcgtg ttcggctcga tcctcgtgtg ggccatgcgc cgcctgcacc
     3001 cgctcaccgc ggccttgctg atgctcgttc tcgtcgcgct tccggtgctc ggtgcattcg
     3061 gcctctaccg c
//
LOCUS       DASVHM010000191         1656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_445923, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000191 DASVHM010000000
VERSION     DASVHM010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1656
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445923"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..295
                     /locus_tag="VF308_03840"
     CDS             <1..295
                     /locus_tag="VF308_03840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435812.1"
                     /translation="NAVRNNLVTIALALDDFQRLRRALFGSGGDALPEVAPPIVIDMR
                     DRTLAFGTEQRIEFEFDPVRQHMLIEGLDDCDYTAAYSAAIDAYESAGSALER"
     gene            complement(311..1285)
                     /locus_tag="VF308_03845"
     CDS             complement(311..1285)
                     /locus_tag="VF308_03845"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018904762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDR/VanB family oxidoreductase"
                     /protein_id="HEX7435813.1"
                     /translation="MNAAPTPLIEVRVARKTVEAEDIAGFELAAADGGTLPSFAAGAH
                     IDVHLPGGLQRQYSLCNAPGETHRYCIGVLRDPASRGGSVAMHELVHEGTRLAIGAPK
                     NHFALHEDAARSLLFAGGIGVTPILAMAERLSATDAEFEMHYCTRSPARTAYAQRLRD
                     SRFADRVHFHFDDGPPQQKLDLAQRLRAPKPDTRLYVCGPSGFLDAVRATARDCGWSD
                     AQIHFEYFSGVAPHSAEDRSFDVVINSSGKVIRVAAAQTITEALAEHGVFVPVSCQQG
                     VCGTCLTRVIEGAIDHKDLYLSPEERAANDQFLPCCSRAAGSRLVLDL"
     gene            complement(1316..>1656)
                     /locus_tag="VF308_03850"
     CDS             complement(1316..>1656)
                     /locus_tag="VF308_03850"
                     /inference="COORDINATES: protein motif:HMM:NF013757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IclR family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HEX7435814.1"
                     /translation="SGLLFLRTFTDAQLDAYFERVSMLPLTFRTLTMPEQVRESVRRV
                     RQEGHAVCDRAFADEFRSVAVPVRDGRGTVVGAMLAVVLAARLSEEELRSTLLPALGA
                     AAQEAGQRWR"
BASE COUNT          275 a          568 c          572 g          241 t
ORIGIN      
        1 caatgccgta cgcaacaacc tcgtgaccat cgcgcttgcg ctcgacgatt ttcagcgctt
       61 gcgccgcgcc ctgttcggat cgggcggcga tgccctgccg gaagtcgccc cgcccatcgt
      121 cattgacatg cgtgaccgga cgcttgcctt cggcaccgaa caacgcatcg aattcgaatt
      181 cgacccggtc cgccagcaca tgctcatcga gggactcgat gactgcgact acaccgccgc
      241 ctactcggcg gcgatcgacg cgtacgagtc tgcaggcagc gcactcgaac gctgagcggc
      301 gcggctgccc tcaaaggtcg agcacaagcc tagagcccgc ggcgcgcgag cagcaaggca
      361 ggaactggtc gttggccgcc cgctcctccg gcgacagata gaggtccttg tgatcgatcg
      421 cgccttcgat gacgcgtgtc agacaggtgc cgcagacgcc ttgctggcaa gacacgggca
      481 cgaagacgcc gtgctcagcc aacgcctcgg tgatcgtctg tgccgcagcg acgcgaatga
      541 ccttgccgct gctgttgatc acgacgtcga agctgcggtc ttcggccgag tgcggcgcga
      601 cgccgctgaa atattcgaag tggatctgcg cgtcgctcca gccgcagtct cgtgcggtgg
      661 cgcgcacggc atcgagaaag cccgacgggc cgcagacgta gaggcgggtg tccggcttgg
      721 gcgcgcgcag gcgctgcgcg aggtcgagct tctgttgcgg cgggccgtcg tcgaagtgga
      781 agtgaacgcg gtcggcaaaa cggctgtcgc gcagccgctg cgcataggcc gtgcgcgcgg
      841 gcgatcgcgt gcagtagtgc atctcgaact cggcatcggt cgcgctcagg cgctcggcca
      901 tcgcgaggat gggcgtcacg ccgatgccgc cggcaaagag caggctgcgc gcggcgtctt
      961 cgtgcagcgc gaagtgattc ttcggcgcgc cgatcgcgag acgcgtgccc tcgtgcacga
     1021 gctcgtgcat cgcgaccgag ccgccgcgcg aggccggatc gcgcagcaca ccgatgcagt
     1081 agcggtgcgt ctcgccgggc gcgttgcaca gcgaatactg acgctgcaag ccacccggca
     1141 ggtgcacgtc gatgtgggcg ccggcggcga acgacggcaa cgtgccgcca tcggccgcgg
     1201 cgagttcgaa gcctgcgatg tcctcggcct cgaccgtctt gcgggcgacc cggacctcga
     1261 tcagcggcgt gggcgcagcg ttcatgcggg gaaccggccc gacgcagcga tgcgctcagc
     1321 gccagcgctg gcccgcctcc tgcgccgccg caccgagagc gggcagcagc gtcgaacgga
     1381 gttcctcctc cgacagtcgc gcggccagga ccaccgcgag catggccccg accaccgtgc
     1441 cgcggccgtc gcgcaccggg accgcgaccg accgaaactc gtcggcgaag gcccggtcgc
     1501 acacggcatg accctcctgg cggacgcggc gcacggactc ccgcacttgc tccggcatgg
     1561 tcagcgtgcg gaacgtgagc ggcagcatcg acacgcgctc gaagtaggcg tcgagctgcg
     1621 cgtcggtgaa ggttctgagg aaaagcaatc cgctcg
//
LOCUS       DASVHM010000192         2078 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1383606, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000192 DASVHM010000000
VERSION     DASVHM010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2078
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1383606"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..1363)
                     /locus_tag="VF308_03855"
     CDS             complement(83..1363)
                     /locus_tag="VF308_03855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEX7435815.1"
                     /translation="MSVVGVIGLGYVGLPLVIEFGKLGRTIGFDILEDKVARCRAGVD
                     PSREISDADMALAVHAEYTSDPARLREADYILVAVPTPVDNAHIPDFGPLIGASRTIG
                     ANLKQGAVVIYESTVYPGATEEICIPVLEQSSGRTWKRDFFVGYSPERINPGDREHML
                     TNVVKVVAGDSAETLDKVARLYERVVGPGVHRCSSIKAAEACKVIENTQRDLNIALMN
                     ELAIIFDKVGIDTSEVLEAAGTKWNFLKFKPGLVGGHCIGVDPYYMTHKAETLGYHPQ
                     VILAGRRINDGMGKYIAEQTVKQMIAAGQQIRGARVNVLGLTFKEDCADLRNSKVVDI
                     VEELKSYGVEVSVHDPQGDPAEAREEYGITLSAWDDLPRAGALIAAVAHAEYRRLGID
                     KIAAKLVAGGCFVDVKAGFDADALRAAGLCVWRL"
     gene            1566..>2078
                     /locus_tag="VF308_03860"
     CDS             1566..>2078
                     /locus_tag="VF308_03860"
                     /inference="COORDINATES: protein motif:HMM:NF013146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX7435816.1"
                     /translation="MPFFIVSFLTSLIATLLVVRSASLHSWLSADHDFSGPQKFHTRA
                     VPRIGGVGVIVAMAVAGVFDYFKQADAAPYFWLFMACALPAFLAGIAEDLTKKVAARW
                     RLLATCVSAALAVWLLGGVIVRTDIPGIDQLITMAPFAVALTLLCVTGVANAINIIDG
                     FNGLASMCVMM"
BASE COUNT          310 a          706 c          690 g          372 t
ORIGIN      
        1 gaccgcagtg tgctggcgtt gacgatgctg aacgagctgg aacgcgtcgc ggccacccgc
       61 accgggcgct gaccggccgc gctcagagac gccagacgca caggcccgca gcgcgcaggg
      121 cgtcggcgtc gaacccggcc ttgacgtcga cgaagcagcc gccggcgacc agcttggcgg
      181 cgatcttgtc gatgcccagg cgtcggtact cggcatgggc gaccgcggcg atcagcgcgc
      241 ccgcgcgcgg caagtcgtcc caggccgaca gcgtgatgcc gtattcctcg cgcgcctccg
      301 ccgggtcgcc ctggggatcg tgcaccgaca cctcgacgcc gtagctcttc aactcctcga
      361 cgatgtcgac gaccttgctg ttgcgcaggt cggcgcagtc ttccttgaag gtcaagccga
      421 gcacgttgac cctggcgccg cggatctgct ggccggcggc gatcatctgc ttgacggtct
      481 gctcggcgat gtacttgccc atgccgtcgt tgatgcgccg accggcgagg atgacctgcg
      541 ggtgatagcc gagcgtctcg gccttgtgcg tcatataata gggatcgacg ccgatgcagt
      601 ggccgccgac gagccccggc ttgaacttga ggaagttcca cttcgtcccg gcggcctcga
      661 gcacctccga cgtgtcgatg ccgaccttgt cgaagatgat cgccagctcg ttcatgaggg
      721 cgatgttgag atcgcgctgg gtgttctcga tcaccttgca tgcttccgcc gccttgatgc
      781 tcgagcagcg gtgcacgccc gggccgacga cgcgctcgta gagccgcgcc accttgtcga
      841 gcgtctcggc gctgtcgccg gcgacgacct tgacgacgtt ggtgagcatg tgctcgcggt
      901 cgcccgggtt gattcgctcc gggctgtagc cgacgaagaa atcccgcttc caggttcgcc
      961 ccgacgactg ttcgaggacc ggaatgcaga tctcctcggt ggcaccggga tagacggtgg
     1021 actcgtagat gacgacagcg ccctgcttca gattcgctcc gatcgtccgg ctcgcaccga
     1081 tgagcgggcc gaagtcgggg atgtgcgcgt tgtcgaccgg cgtcggcacc gccacgagga
     1141 tgtagtcggc ctcgcgcagc cgggccggat cgctggtgta ttcggcgtgg acggcgagcg
     1201 ccatgtcggc gtcgctgatc tcgcgcgacg gatcgacgcc ggcgcgacag cgcgcgacct
     1261 tgtcctcgag gatgtcgaag ccgatcgtcc tgcccagctt gccgaactcg atgacgaggg
     1321 gcaacccgac gtaccccagt ccgatgacac cgacaacgct cacgtcaatt accggctcgc
     1381 cggctccgat gggtggggtg ccggagaccc gaacggcgac gggtcggagc ccctctgggc
     1441 caggccggca aagcttgtaa ttctaaggcc cgggcgcacg ccgtcgaccc tgacggactg
     1501 cggacgcgcg cacacaacga cggccaccgg gcaaccatca caatagcggc gctcgtaacg
     1561 cccccatgcc gttcttcatc gtctctttcc tgacctcgct gatcgcgacg ctcctcgtcg
     1621 tgcgctcggc gtcgctccat tcgtggctgt cggcggacca cgatttctcc gggccgcaga
     1681 agttccacac gcgtgccgtg ccgcgcatcg gcggcgtcgg cgtcatcgtc gcgatggccg
     1741 tggccggcgt cttcgactac ttcaagcaag ccgacgcggc gccctatttc tggctcttca
     1801 tggcatgcgc gctgccggca ttcctggctg gcatcgccga ggacctgacc aagaaggtgg
     1861 cggcgcgctg gcgcctgctg gcgacctgcg tgtcggcggc gctggcggtc tggctgctcg
     1921 gcggcgtgat cgtgcggacc gacattcccg gcatcgacca gctgatcacg atggccccct
     1981 tcgcggtggc gctgaccctg ctttgcgtga ccggtgtcgc caacgcgatc aacatcatcg
     2041 acggcttcaa cggcctcgcc tcgatgtgcg tgatgatg
//
LOCUS       DASVHM010000193         1676 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_518631, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000193 DASVHM010000000
VERSION     DASVHM010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_518631"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            131..631
                     /locus_tag="VF308_03865"
     CDS             131..631
                     /locus_tag="VF308_03865"
                     /inference="COORDINATES: protein motif:HMM:NF014346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030077 - plasma membrane
                     light-harvesting complex [Evidence IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0019684 - photosynthesis, light reaction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="photosynthetic reaction center cytochrome c
                     subunit family protein"
                     /protein_id="HEX7435817.1"
                     /translation="MVVQGGGEAGRGGPPGAGGPPGGGRGGPPMTPERRAARRDSIST
                     IRTATLAQLMKDIAGRENEPAGTVFKNVQLLKDMPAGKFLTSMDQDFGRALSHNCTDC
                     HIKDQWASDSLNRKKTARVMIQVLNGINNDLLTKMPVRAGQPTLKINCISCHHGNGNP
                     GTAIMP"
     gene            871..>1676
                     /locus_tag="VF308_03870"
     CDS             871..>1676
                     /locus_tag="VF308_03870"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEX7435818.1"
                     /translation="MLVKEGDKVEANQLLAVLVPDELRADRAFAAQSEQGLGNQVDVS
                     AAALRYQEQQTADQIKQAQANVATAIAQQQEATANLDIAKLSLGRSEAMLKAGAISNQ
                     DLDQARTNFAVATARVQATTKQVESARAALALAQSAAEQIAVRRGGLLAAQREKAAAR
                     AQTTKADVRLAYSEIRAPIAGIVDVAAARAGEIVSPGQAIVTLINPDDLWVRADVEES
                     YIDRIKLGDSLTVRLPSGEERRGAVFYRGVDAGFATQRDVSRTKRDIKTF"
BASE COUNT          307 a          570 c          566 g          233 t
ORIGIN      
        1 actgttggtg gttgcggcgg catcgtgctc gaagccgaaa ccggctccgg ccccggcgcc
       61 ggccgcggga ccggcggctg cgccgccaag tgcgacaccg gctgccggta ggccggcagc
      121 acctccggcg atggtggtcc agggcggcgg cgaagcaggc aggggcgggc ctcccggcgc
      181 aggcggccct ccgggcggtg gacgcggcgg cccgccgatg actccggaac ggcgcgcggc
      241 ccgccgcgat tcgatctcga ccatccgcac ggcgaccctg gcgcagttga tgaaggacat
      301 tgccggccgt gagaacgaac ccgcaggcac ggtcttcaag aacgtgcagc tcctgaagga
      361 catgcctgct ggaaagttcc tgacgtcgat ggaccaggac ttcggtcgcg cgctcagcca
      421 caactgcacc gattgccaca tcaaggacca gtgggcgagc gacagcctga accgcaagaa
      481 gactgcgcgc gtcatgattc aggtattgaa cggcatcaac aacgacctgc tcaccaagat
      541 gccggtccgt gcaggccagc ccacgctgaa gatcaactgc atcagctgcc atcacgggaa
      601 cgggaatccc ggtacggcga tcatgccctg agtcggcacg cgcctgacac gttccacgga
      661 gtccggtcgc cccatctcga atgaggtggg gcgacttcgt tagtttgatg gatgacttcc
      721 aggaaacgca cactaacgat cggcgcgatc gtaatcgtca tcgtcgtcgc ggtggtcatc
      781 ttcgcgcgtc cgggcccgct cgtgctcacc ggaatcgtga cgaccaacga cgtcatcgtc
      841 agtccgcagg tcagcgccca gctcggcaag ttgctcgtca aggaaggcga caaggtcgag
      901 gcgaaccagc tgcttgccgt ccttgtgccc gacgagttgc gcgccgaccg cgctttcgcc
      961 gcgcaaagcg aacagggact cggcaatcag gtggacgtga gcgccgcggc gctgcgctat
     1021 caggaacagc agaccgccga ccagatcaaa caggcccagg cgaacgtcgc caccgcgatc
     1081 gcgcaacagc aggaggccac ggccaacctc gatatcgcga aactctccct cggccggagc
     1141 gaggcgatgc tgaaggccgg cgcgatctcg aaccaggacc tcgaccaggc gcgcacgaac
     1201 ttcgccgtcg ccacggcccg cgtgcaggcg acgaccaagc aggtggagtc ggcgcgcgcc
     1261 gcgctcgcgc tggctcagtc cgcggccgag cagattgcgg tgcgtcgtgg cggcctgttg
     1321 gcggcgcagc gcgagaaggc cgccgcgcgc gcgcagacca ccaaggccga cgtgcgtctc
     1381 gcgtattccg agatccgcgc gccgatcgcg gggatcgtgg acgtggccgc cgcgcgcgcc
     1441 ggcgagatcg tgagcccggg acaggcgatc gtcacgctca tcaaccccga cgacctgtgg
     1501 gtgcgcgccg acgtggagga gagctacatc gaccgcatca agctcggtga ttcgcttacc
     1561 gttcgcctcc cctcgggcga ggagcgccgc ggcgccgtct tctatcgcgg cgtggacgcc
     1621 gggttcgcga cgcagcgcga cgtcagccgc acgaagcgcg acatcaagac attcga
//
LOCUS       DASVHM010000194         2076 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_735263, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000194 DASVHM010000000
VERSION     DASVHM010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_735263"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..395)
                     /gene="lptE"
                     /locus_tag="VF308_03875"
     CDS             complement(<1..395)
                     /gene="lptE"
                     /locus_tag="VF308_03875"
                     /inference="COORDINATES: protein motif:HMM:NF016290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HEX7435819.1"
                     /translation="MRRRLLLGAAVTLPGCGFALKRAPELSFKTIQLTGFAPRSPLAA
                     ELKMNLEASPTTRVVESAGEAQVVLQALSEAREKVVVAQTSANQIREFELRLRFNFRV
                     RSGTGKDLIPDSEILLRRSLTYTESAALA"
     gene            complement(395..>2076)
                     /gene="leuS"
                     /locus_tag="VF308_03880"
     CDS             complement(395..>2076)
                     /gene="leuS"
                     /locus_tag="VF308_03880"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEX7435820.1"
                     /translation="GLYVQHPLSHEQIPLWVGNYVLIHYGDGAVMGVPAHDERDFAFA
                     RQYGIDMWQVIHVDGEEFSYDEWQDWYADTTCSVTINSDVYSGLAYEVAVDAVAAALE
                     HRGLGGKQTTWRLRDWGVSRQRYWGTPIPIVHCEVCGVVPVPEKDLPVVLPEDLIPDG
                     SGNPLAKHGAFLNVPCPKCGRPARRETDTMDTFVDSAWYYMRYCDPHLDDAMVGPGTE
                     YWMPMDQYIGGIEHAILHLLYARFWTKVMRDMKLVAIDEPFTRLLTQGMVLNHVWARP
                     SAQGGVDYFPPDEVTAIGEAEGRPSSGRLADGTTVEYRGMLKMGKTERNGVDPQDLID
                     RYGGDTARLFVMFAAPPEQSLDWNNAGVEGANRFLKRLWKFAAKHADTIDSAPARRPA
                     RGAAPALRHEIHSVLRQVSYDYERMQYNTVVSGAMKLLNALEAHAGEAAPAPAPLREG
                     FGILLRVLYPVCPHTTWTLWNELGFAADHGSMLDAPWPQVDESALVQDEIELVLQING
                     KLRGSIRVAATADRAHIEAAALASPEFAKFGAGQHIKKVIVVSGRLVNIVV"
BASE COUNT          299 a          693 c          742 g          342 t
ORIGIN      
        1 ttggcgagcg ccgcgctctc ggtgtaggtg agcgagcggc gcagcaggat ttcgctgtcg
       61 gggatgagat ccttgccggt gccgctgcgg acgcggaagt tgaagcgcag gcgcagctcg
      121 aactcgcgga tctggttcgc ggaggtctgc gcgacgacca ccttctcgcg cgcttcggac
      181 agtgcctgga ggacgacctg cgcttcgccc gcgctctcga cgacgcgcgt cgtcgggctc
      241 gcctcgagat tcatcttcag ctccgcagcg agcggcgagc gcggcgcgaa gccggtcagc
      301 tggatcgtct tgaagctgag ctcgggcgcg cgcttgagcg cgaagccgca gccggggagc
      361 gtgaccgcgg cgccgagaag gaggcgccgc cgcatcagac gacgatgttg accagccggc
      421 cggagacgac gatcaccttc ttgatgtgct gccctgcgcc gaacttggcg aattccggcg
      481 atgccagcgc cgcggcttcg atgtgcgccc tgtcggcggt cgcggcgacg cggatcgaac
      541 cgcgcagctt gccgttgatc tgcagcacca gctcgatctc gtcctgcacc agcgcgctct
      601 cgtcgacctg cggccagggc gcgtcgagca tgctgccgtg gtcggccgcg aagccgagct
      661 cgttccacaa cgtccaggtg gtgtgcggac agacggggta gagcacgcgc agcaggatgc
      721 cgaagccctc gcgcagcggc gccggcgcgg gcgcggcctc gccggcgtgc gcctcgagcg
      781 cgttgaggag cttcatcgcg cccgagacga cggtgttgta ttgcatccgc tcgtagtcgt
      841 agctgacctg gcgcagcact gagtggatct cgtggcgcag cgccggcgcg gcgccgcgcg
      901 ccggccggcg cgccggtgcc gaatcgatcg tgtcggcgtg cttcgcggcg aacttccaga
      961 ggcgcttgag gaaccggttc gcgccttcga caccggcgtt gttccagtcg agcgactgct
     1021 cgggcggcgc cgcgaacatg acgaagaggc gcgccgtgtc gccgccgtag cggtcgatga
     1081 ggtcctgcgg gtcgacgccg ttgcgctcgg tcttgcccat cttcagcatg ccgcggtact
     1141 cgaccgttgt gccgtcggcg aggcgcccgc tgctcggccg gccctcggcc tcgccgatcg
     1201 ccgtcacctc gtccggcggg aagtagtcga ccccgccctg cgcggacggt cgcgcccaga
     1261 cgtggttcag caccatcccc tgagtgagca gccgcgtgaa cggctcgtcg atcgcgacca
     1321 gcttcatatc gcgcatcacc ttggtccaga agcgcgcgta gagcaggtgc aggatcgcgt
     1381 gctcgatgcc gccgatgtac tgatccatcg gcatccagta ctcggtaccg gggccgacca
     1441 tcgcgtcgtc gaggtgcgga tcgcagtagc gcatgtagta ccacgcgctg tcgacgaagg
     1501 tgtccatcgt gtccgtttcg cggcgcgccg gtcggccgca cttgggacac gggacgttca
     1561 ggaaggcacc gtgcttggcg agcggattgc ccgagccgtc ggggatcaag tcttcgggca
     1621 ggacgacggg caggtccttc tcgggcaccg gcacgacgcc gcagacctcg caatggacga
     1681 tcgggatcgg cgtgccccaa tagcgctgcc ggctgacgcc ccagtcgcgc aggcgccagg
     1741 tcgtctgctt gccgccgagg ccgcggtgct cgagcgcggc ggcgacggcg tcgaccgcga
     1801 cctcgtacgc gaggccgctg tagacgtcgg agttgatcgt gacgctgcac gtcgtgtcgg
     1861 cgtaccagtc ctgccactcg tcgtacgaga actcctcgcc gtcgacgtgg atcacctgcc
     1921 acatgtcgat gccgtactgc ctggcgaagg cgaagtcgcg ctcgtcgtgg gcgggaacgc
     1981 ccatcaccgc gccgtcgccg tagtggatca ggacgtagtt gccgacccag agcggaatct
     2041 gctcgtggct gagcggatgc tggacgtaga ggcccg
//
LOCUS       DASVHM010000195         3385 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_230458, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000195 DASVHM010000000
VERSION     DASVHM010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3385
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230458"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..475
                     /locus_tag="VF308_03885"
     CDS             <1..475
                     /locus_tag="VF308_03885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEX7435821.1"
                     /translation="VDLVLADEPMSRQLSVKAFNHVLGTSAMSFFCAPRLKKGLVGRF
                     PQNLEGASMLIPGPGSAIRRRFDLWSTTHRIRPRIVGEFDDSALMTAFGREGRGVFMA
                     PGVLERETCAQYGVQVLGRTDDLIGEFYAISVERRITHPCVEAITQAARGRLFPT"
     gene            531..1742
                     /locus_tag="VF308_03890"
     CDS             531..1742
                     /locus_tag="VF308_03890"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003953 - NAD+ nucleosidase activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HEX7435822.1"
                     /translation="MADIFLSYRRQDSQSATGRLADRLEEHFSRARVFRDHESIVVGE
                     DFAEAIRRAVEASTVLLVILGPRWLGAADASGARRLDDPADFVRLEIELAFAADVAVV
                     PVLVEGATMPVAGALPPSLAEFARCQALELSETRWRYDADRLIAALQSRFALESVQPE
                     LPSRDGSGAGLATRLATDLLDLATHPTRLIARRQTGQASDHVRAFAFLLGCIAAGNLG
                     LVIGLDFRPSPSPLVGGAPFALLSWLLAGELVSLIVIAMLSAALTLAWRLTGPPVPLR
                     RITLISAYLYGGVWLGFCGGALMLGAAAQLVEPGFFDRVVAVVNAAAHTASGPWRQVA
                     TLGSVPFHGPAVALVLIAFAIWLVTVAWSVVAWGAFRQAFGAGRRRAALATLLWLGML
                     GLLLWLSDRLG"
     gene            1934..2554
                     /locus_tag="VF308_03895"
     CDS             1934..2554
                     /locus_tag="VF308_03895"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ANTAR domain-containing protein"
                     /protein_id="HEX7435823.1"
                     /translation="MASPPDPPSLPTKLRVLLIDDGARHIQPIRAELVRQGHEVVGVI
                     ASATLIHDCVQRLQPDVVIVDTDSPTRDTLENLATLSSSNPRPVVVFTEDGSQGPMQS
                     ALRAGVSAYVIAGLQPERLEPVLQVAIARFEQEAALRAQLGKAEQQLAARKVIERAKG
                     VLMAEAGLDEDSAYKRLRKLAMDRGKRLVEVAESVIEAQELLRPRG"
     gene            2824..>3385
                     /locus_tag="VF308_03900"
     CDS             2824..>3385
                     /locus_tag="VF308_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011869991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CmpA/NrtA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEX7435824.1"
                     /translation="MNTSEGLMSEERRSFIKGSVATAAALATASPAAWAAGSDAPEKK
                     EVRIGFIPLTDCASIVMASVLKFDEKYGIKIIPSKEASWAGVRDKLVNGELDMAHVLY
                     GLVYGVHLGVSGPKKDMAVLMTLNNNGQAITLSKKLADKGAVDGASLAKLMQSDKREY
                     SFAQTFPTGTHAMWLYYWMATYGISPM"
BASE COUNT          504 a         1198 c         1143 g          540 t
ORIGIN      
        1 ggtcgacctg gtcctcgccg acgagccgat gagccgccag ctcagcgtca aggcgttcaa
       61 ccatgtgctc ggcacctcgg cgatgagctt cttctgcgcg ccgcggctga agaaggggct
      121 ggtcgggcgc ttcccgcaga acctggaggg cgcgtcgatg ctgatcccgg gccccggatc
      181 ggcgatccgc cgtcgtttcg acctctggag cacgacgcac cgcatccgac cgcggatcgt
      241 cggcgaattc gacgacagcg cgctgatgac ggcgttcggc cgcgaaggcc gcggcgtatt
      301 catggcgccg ggcgttctcg aacgcgagac ctgcgcacag tacggcgtgc aggtgctggg
      361 gcgaaccgat gacctgatcg gggagttcta cgcgatctcg gtcgagcgcc gcatcacgca
      421 tccctgcgtc gaggcgatca cgcaggccgc gcgcgggcgg ctgtttccga cctgagaagc
      481 gcagctcgag aagtgcgcca cctcatctac gatgcagtgc gagcagcacc atggccgaca
      541 tctttctttc ctaccggcgc caggacagcc agagcgcgac cggtcggctc gccgaccggc
      601 tcgaggaaca tttcagtcgg gcgcgcgtgt tccgcgacca cgaatcgatc gtcgtcggcg
      661 aggacttcgc cgaggcgatc cggcgtgcgg tggaggcctc gacggtgctg ctcgtcatcc
      721 tcggcccgcg ctggctgggc gccgctgacg cctccggcgc acgccgcctc gacgacccgg
      781 ccgatttcgt ccgcctcgag atcgagctcg ccttcgcagc cgacgtcgcc gtggtcccgg
      841 tgctggtcga aggagccacc atgccggtgg ccggggcgct gccgccgtcg ctcgccgaat
      901 tcgcgcgctg ccaggcgctg gagctttccg agacgcgctg gcgctacgac gccgaccgat
      961 tgatcgcggc cctgcagtcg cgcttcgcgc tcgaatcggt gcagcccgag ctgccgtcgc
     1021 gcgacggatc cggcgcaggc ctcgcaaccc ggctcgccac cgacctgctc gacctcgcga
     1081 cccacccgac ccgcctgatc gcgcggcgcc agactggaca ggcgagcgac cacgtgcgcg
     1141 ccttcgcctt cctgctcggc tgcatcgcag ccggcaacct cgggctggtc atcggactgg
     1201 acttccgtcc gagcccgagc ccgctcgtcg gcggcgcgcc cttcgcgctg ctcagctggc
     1261 tgctcgccgg cgaactcgtc agcctgatcg tcatcgcgat gctctcggcg gcgctgacgc
     1321 tcgcgtggcg cctgaccggc ccgccggtgc ccttgcgccg catcaccctg atctcggcct
     1381 atctctacgg cggcgtctgg ctcgggtttt gcggcggcgc gctcatgctg ggcgcggcgg
     1441 cgcaactggt cgagcccggc ttcttcgacc gcgtggtcgc ggtcgtgaac gccgcagcgc
     1501 acacggcctc cggcccgtgg cggcaggtcg cgactctcgg ctccgtcccg ttccacggcc
     1561 cggccgttgc cctcgtcctc atcgcgttcg cgatctggct cgtgacagtc gcctggagcg
     1621 tggtcgcgtg gggcgcgttc cgacaggctt tcggcgcggg tcggcgccgg gccgcgctcg
     1681 ccacgctcct ctggctcggc atgctgggtc tcctgctgtg gctcagcgat cgcctcggct
     1741 aggacctgcg agggtcgcct gcggctacgt gcccgccgac gtgcgcgtga gacaagcgca
     1801 gctgatcgcg ctgtggcgcg ccgagccgcg gtcggcctga cgcgaaaccg gttcgcggca
     1861 cgcctcttgc tgttgaaagg tcgagcggct ccgcgcgacg cggggcgagc cgtgccgaag
     1921 gaggcgcatt tccatggcct cgccgcccga tccaccgtct ctgccgacca aactgcgcgt
     1981 gctgctgatc gacgacggcg cgcgccacat ccagccgatc cgcgccgaac tcgtgcgcca
     2041 gggccacgag gtggtcggcg tgatcgcttc ggcgacgctc atccacgact gcgtgcagcg
     2101 gctccagccc gacgtcgtca tcgtcgacac cgattcgccg acgcgcgaca cgctcgaaaa
     2161 cctcgcgacg ctgtcgtcga gcaacccccg ccccgtggtg gtgttcaccg aagacggcag
     2221 ccaggggccg atgcagagcg cgctgcgcgc cggcgtcagc gcctatgtca tcgccggctt
     2281 gcagccggag cgtctcgaac cggtgctgca ggtcgcgatc gcccgcttcg aacaggaggc
     2341 cgcactgcgt gcgcaactcg gcaaggccga gcagcaactc gccgcgagga aggtcatcga
     2401 gcgggccaag ggcgtgctga tggccgaagc gggtctcgac gaagactcag cctacaagcg
     2461 cctgcgcaag ctcgcgatgg atcgcggcaa gcgtctcgtc gaagtcgccg aaagcgttat
     2521 cgaggcccag gaactgctgc gcccgcgcgg ctgatccccg cacgatcgaa ccgcttcgct
     2581 gcaccagcgc catgcgccgg cagtgcccgc acgcctgtgt ttggtgcggc gcagcatcgg
     2641 gcccggccca aaaccacata tttcagctgg cacgttgcgt gcatgcaaga gcgcaaggcc
     2701 gcaacgacgt ggccaccttt tcagtgtttc ggacaagggc gtccgatcac cgtgcccaga
     2761 acgccatggc gtcgagcgcg gagatcgcgg cgcccttttt gtttttttcg gcgaaggatc
     2821 ggcatgaaca cgagcgaggg tctgatgagc gaagagcggc gcagcttcat caaggggtcg
     2881 gtcgcgaccg cggccgcgct ggcgaccgca tcgcccgctg catgggccgc gggttccgac
     2941 gcgcccgaga agaaggaggt gcgcatcggc ttcattccgc tgaccgactg cgcctcgatc
     3001 gtgatggcct cggtgctcaa gttcgacgag aagtacggca tcaagatcat cccgagcaag
     3061 gaagcctcgt gggccggcgt gcgcgacaag ctcgtcaacg gcgagctcga catggcgcac
     3121 gtgctctacg gcctggtcta cggcgtgcac ctcggcgtga gcggcccgaa gaaggacatg
     3181 gccgtgctga tgacgctcaa caacaacggc caggcgatca ccctgtcgaa gaagctcgcc
     3241 gacaagggcg cggtcgacgg cgcctctctc gccaagctga tgcagagcga caagcgcgag
     3301 tactcgttcg cgcagacgtt tccgaccggc acccacgcga tgtggctcta ctactggatg
     3361 gcgacctacg gcatcagccc gatga
//
LOCUS       DASVHM010000196         4026 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1240167, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000196 DASVHM010000000
VERSION     DASVHM010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4026
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1240167"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(341..2407)
                     /locus_tag="VF308_03905"
     CDS             complement(341..2407)
                     /locus_tag="VF308_03905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HEX7435825.1"
                     /translation="MTNSTHPLPSGFQNAERGKVVSAADAVRLIRDGDTVATGGFVGI
                     GFAEEIAIALEERFLSAREQDEASVGSPRGLTLVYAAGQGDGKDKGLNHLAHEGLVRR
                     VVGGHWGLVPKLQELAIANRIEAYNLPQGVITHLYRDIAAHKPGQLSQIGLGTFVDPR
                     FGGGKLNARTTEELVELMPIGGVDYLFYKTFPIDVGIIRGTTADPDGNVTMEKEALTL
                     EVLAIAMAAHNSGGIVIVQVERIAERGSLNPRQVKIPGILVDCVVVSRPENHWQTFAE
                     PYSAAFSGEIRVQMSAIAPMDMSARKIIARRAALELMPNSVVNLGIGMPEGVASVANE
                     EKIIDLMTLTAEPGVIGGLPAGGLNFGAAANTQAIIDQPSQFDFYDGGGLDIAFLGLA
                     QADREGNLNVSKFGPKLAGAGGFINISQSAKKVVFMGTFNAGRCELAIADGKLQIRED
                     GASRKFVGEVEHRTFSGSHSAARKQTALYVTERCVFSLGPEGLELVEIAPGVNLQKDI
                     LAKMDFAPVMHRPPRLMDERIFLPEPMGLRDDMLALPLEQRFSYDAAQNVFFINFERL
                     AVKTPDDIEKIRQAIESRLAPLQKKVFGIVNYEGFTIPPELTDAFGDMVQGLVDRFYY
                     GVTRYTTSSFLRLKLGEALRQRDVAPHIYESAEEARAHLREMELKATADDCEAAAQSA
                     AYRPLP"
     gene            complement(2520..3905)
                     /locus_tag="VF308_03910"
     CDS             complement(2520..3905)
                     /locus_tag="VF308_03910"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEX7435826.1"
                     /translation="MISDAVLTAMLPEHLLLLGIVLVLGLEIAGRGQRASLGVAVLAV
                     AAAAVAAAGLSLGGYAAAPFAGQFSVDPASLMAKAMVLALALPVLLMSRDEFENGEFP
                     ALLLSSLYGVCLMQSADSFLTLFLGLELMSLPVYVLVLLAYRRPQSAEAALKYLVLGG
                     TATAMFLMGASLLYGASGSMATATFAVGLGSDNGLARAAVMLVVLAFFLKGAIVPFHA
                     WAPDAYEGASVPVTAYMATIVKAGVLLAVVRLFGRANVASPMLELLAVLPLVSIVWGN
                     LAAMRQPSLRRMIAYSSIAHAGYLFYAVLGDAAGRLQAVAFYLLAYGVMNLLAFAALP
                     AATDDFARDRLDNLRGLFHRAPFAALMLGVAMLSLAGIPPFPGFVAKFLIFRNVMSAG
                     YTTYAVLGLVGSYLGIYFYLRVIQVMFMSTDAVVADSGKARPLALGASLACFAAAALL
                     MVFPGWVIAGL"
BASE COUNT          705 a         1296 c         1397 g          628 t
ORIGIN      
        1 ggcctttgac gcggtgggag aaagcatcga atggcagctt gctggggcct aaccggtaga
       61 gaacaagcgg ctcgaaagcg acggccgcgt cttcagggtg agacgacgtt cgctgctgat
      121 atcttcgtcg gtgacgccgc cggggagacc cactaagtga ggcgtgtaaa gtacctttcg
      181 aatgttgctc gagtaggtcc tgccgacctg cgaatcagag tccgaaccca aggccaatgg
      241 ctcccaaaga tgtgaccggg tagctcaccg ggtaactctg accagtcgga cgcagaatcg
      301 ctggacgtta ggcatcaaca cggcctacca gcacgagacg tcatgggaga ggtcgatacg
      361 cggcggactg ggcggcagcc tcgcaatcgt ccgccgttgc cttgagctcc atctcgcgca
      421 agtgggcccg ggcctcttcg gcgctctcgt agatgtgagg agcgacgtcg cgctgccgca
      481 gcgcttcgcc gagcttcagc cgcaggaagc tgctcgtcgt atagcgggtg acaccgtagt
      541 agaaacggtc gaccaatccc tgcaccatgt cgccaaacgc gtcggtgagc tccggcggga
      601 tcgtgaaacc ctcgtagttg acgattccga agaccttctt ctgcagcggc gcgaggcgcg
      661 actcgatcgc ctggcggatc ttctcgatgt cgtcgggcgt cttgacggcg agccgctcga
      721 agttgatgaa gaagacgttc tgcgcggcgt cgtagctgaa gcgctgttcg agcggcaagg
      781 caagcatgtc gtcgcgcaag cccatcggtt cgggcaggaa gatccgctcg tccatcaacc
      841 tcggcggtcg gtgcatgacc ggggcgaaat ccatcttcgc gaggatgtcc ttctgcaggt
      901 tcacgccggg cgcgatctcg accagctcga gcccctccgg gccgagcgag aagacgcagc
      961 gctcggtgac gtagagcgcg gtttgcttgc gtgccgccga atggctgccg ctgaaagtgc
     1021 ggtgctcgac ctcgcccacg aactttcgcg aagctccatc ctcgcggatc tggagcttgc
     1081 cgtcggcgat ggcgagctcg cacctccccg cgttgaaggt gcccatgaac accaccttct
     1141 tggcgctctg gctgatgttg atgaatccgc cggcgccggc gagcttgggg ccgaacttgc
     1201 tgacgttgag attgccctct cgatcggctt gggcgaggcc gagaaaggcg atgtcgagcc
     1261 cgccgccatc gtagaaatcg aactggctcg gctggtcgat gatcgcctgc gtgttggccg
     1321 cggcgccgaa attgagcccg cccgcgggca ggccgccgat gaccccgggt tcggcggtca
     1381 gggtcatcag gtcgatgatc ttctcttcgt tggcgacgct cgcgacgccc tcgggcatgc
     1441 cgatgccgag gttgacgacg ctgttgggca tcagctcgag cgccgcccgg cgggcgatga
     1501 tcttgcgcgc gctcatgtcc atgggcgcaa tggcgctcat ctgcaccctg atctcgccgg
     1561 aaaaggcggc gctgtagggc tcggcgaagg tctgccagtg attctccggc cgggagacca
     1621 cgacgcagtc gaccaggatg ccggggatct tgacctgtcg cgggttgagg ctgccacgct
     1681 cggcgatccg ttcgacctgg acgatcacga ttccgcccga gttgtgcgcg gccatcgcga
     1741 tggccagcac ctcgagcgtc agggcctcct tctccatcgt gacgttgccg tccgggtcgg
     1801 cggtcgtgcc gcggatgatg ccgacatcga tcggaaacgt cttgtagaag aggtagtcga
     1861 caccgccgat gggcatcagc tcgaccagct cttcggtggt gcgtgcgttc agcttgccgc
     1921 cgccgaagcg cgggtcgacg aacgttccga gcccgatctg ggagagttga cccggcttgt
     1981 gggcggcgat gtcgcggtag aggtgcgtga tcacgccctg gggcaggttg taggcctcga
     2041 tccgattggc gatggcgagc tcttgcagct tcggcaccag gccccagtgg ccgccgacga
     2101 ctcgccggac gaggccttcg tgggcgagat gattcaggcc cttgtccttg ccgtcgccct
     2161 gacccgccgc gtagacaagg gtcagcccgc gcgggctgcc gacagacgct tcgtcctgct
     2221 ccctggcgga cagaaagcgc tcctccagcg cgatggcgat ctcctccgcg aatccgatgc
     2281 cgacgaaccc gccggtcgcg accgtgtcgc catcgcggat gagccggacg gcatccgcgg
     2341 ccgagacgac cttgccacgt tcggcgttct gaaacccgct cggcaaggga tgagtcgaat
     2401 tcgtcacggg gcgctttcca tggccgttcc gagcgcggtc agtgccggcc ggtgagtcag
     2461 tggcccccga tcacgacgaa cacggcggcc ggcttgatga tcgtgaggcc gagccgactc
     2521 tacaaccctg cgatgaccca ccccgggaac accatgagca gtgccgctgc cgcgaagcag
     2581 gcgaggctcg caccgagcgc gagcggtcgc gccttgccgg agtcggcgac gaccgcgtcg
     2641 gtgctcatga acatgacctg gatcacgcgc aggtagaagt agatgccgag gtagctgccg
     2701 accaggccga gcacggcgta ggtggtgtag ccggcggaca tgacgttcct gaagatcagg
     2761 aacttggcga cgaagccggg gaacggcggg atgccggcca gcgacagcat cgcgacgccg
     2821 agcatcagcg cggcgaacgg ggcccggtgg aacaggccgc gcaggttgtc gagacggtcg
     2881 cgcgcgaagt cgtcggtggc cgccggcagc gccgcgaacg cgagcaggtt catcacgccg
     2941 taggcgagca ggtagaacgc caccgcctgc aggcgcccgg cagcgtcgcc gagcacggcg
     3001 tagaacaggt agccggcatg ggcgatcgag ctgtaggcga tcatgcggcg caggctcggc
     3061 tggcgcatcg ccgcgaggtt gccccagacg atcgagacca gcggcagcac ggccagcaac
     3121 tcgagcatcg gcgatgccac gttcgcgcgc ccgaacagcc gcacgaccgc gagcagcacg
     3181 ccggccttga cgatggtggc catgtatgcc gtgaccggca cgctcgcgcc ttcgtaggcg
     3241 tcgggcgccc aggcgtggaa gggcacgatc gcgcccttca ggaagaaggc caggaccacg
     3301 agcatgacag ccgcgcgcgc cagaccgttg tccgaaccga gcccgacggc gaaggtcgcc
     3361 gtcgccatcg acccgctggc gccgtagagg agcgacgccc ccatcaggaa catggccgtg
     3421 gccgtgccgc cgaggacgag gtacttcagc gccgcttcgg cgctttgcgg ccgccggtag
     3481 gccagcagga ccagcacgta gaccggcagc gacatcagtt cgagcccgag gaacagggtc
     3541 aggaagctgt cggccgactg catcaggcag acgccgtaga gcgacgacag cagcagcgcc
     3601 gggaactcgc cgttctcgaa ctcgtcgcgc gacatgagca gcaccggcag ggccagcgcc
     3661 agcaccatgg ccttggccat caggctggcc gggtcgaccg agaactgccc ggcgaacggc
     3721 gctgccgcgt agccgccgag cgacaggccg gccgcagcga ccgcggccgc ggcgaccgcg
     3781 agcacggcga caccgagcga ggcgcgctgc ccgcgaccgg cgatctccag gccgagcacg
     3841 agcacgatgc cgagcagcag caggtgctcg ggcagcatcg cggtcagcac agcgtcgctg
     3901 atcatggctt tatctccggc aggcgcgacg tgccggccag ttgccggaag gccttggccg
     3961 cgagttcggt cttgtgcatc ggctcggcgg gaaagaggcc gagggcgaag acggcgacga
     4021 cgatca
//
LOCUS       DASVHM010000197         3122 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_301545, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000197 DASVHM010000000
VERSION     DASVHM010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3122
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301545"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..738
                     /locus_tag="VF308_03915"
     CDS             <1..738
                     /locus_tag="VF308_03915"
                     /inference="COORDINATES: protein motif:HMM:NF015366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
                     /protein_id="HEX7435827.1"
                     /translation="MVAKAPADGYTLMVHSAAQAVNPFIYPSLPYDTLKDFVQVVPLG
                     GQPNVLVVAAASGYRTVADLIADARKRPGGLNFGSAGIGSGTHINGEKFKLAAGIDAV
                     HIPYKGTPEALTDTLAGRIAFFFSPISAALPHVRDGKLLALAVSSAKRSSVLPNVPTV
                     AESGLPNFDYNLWVGVFAPAGTPADVVEKINRDVNRVLREPEVKERMTALGAEAMPMS
                     PAEFDKFVRNEMDDAAKVVKAAGIKVQ"
     gene            957..1199
                     /locus_tag="VF308_03920"
     CDS             957..1199
                     /locus_tag="VF308_03920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435828.1"
                     /translation="MNPLHPAPAAPSALPRTLVSAFTLRRVAIALGLAVVLAALLNPV
                     FVTPFVVLPGRMIVIAMLLLLAFTLAGVWKTPGLPR"
     gene            1209..2042
                     /locus_tag="VF308_03925"
     CDS             1209..2042
                     /locus_tag="VF308_03925"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX7435829.1"
                     /translation="MLAVVIVAPLATYLVYLPSIGFMAEPMRHEGFVLGYTFITGSAL
                     VIGPLLALGALYRERDAQAQALRFELERSTLEKQALDARLKLLHAQVEPHFLFNTLAN
                     VQALVESGSPRAAPVLRNLIAYLGAAMPRLQADKPTLGAEAELVRAYLKLMHMRMPDR
                     LRFEIDMPAELAGLSFPPMALLTLIENAIRHGIDPGEAGGRIGVRARRDAAGGPVHVV
                     MADSGVGMSESASAGAGLANLRDRLRAFYGPEARLDLHEEAPHGARAEIVFMPAPEGG
                     A"
     gene            2116..2463
                     /locus_tag="VF308_03930"
     CDS             2116..2463
                     /locus_tag="VF308_03930"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7435830.1"
                     /translation="MSGPTALIADDEPLLRERLRAHLARLWPELEIVAEAHNGREAVE
                     LFDIHLLRIVFLDVQMPGLNGVEAARSVARRAEVVFVTAYEQYACRPSRRARSTTSSS
                     LSTSIASPIRCSA"
     gene            2379..2900
                     /locus_tag="VF308_03935"
     CDS             2379..2900
                     /locus_tag="VF308_03935"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEX7435831.1"
                     /translation="MQAFAQGALDYLVKPFDVDRLADTVQRLKDRLARPSIPGEGPLD
                     TVLEALSAELKRRVGAAAASRRHLQWIKASVGTSLRLIPVEQIAFLRSDEKYTLVVWE
                     GGEALIRKTIRELADELDPESFAQIHRSVFVNLRRVSQVDRGVNETAEVRLKDRKDVL
                     PVSRSFVRVLGQM"
     gene            complement(2891..>3122)
                     /locus_tag="VF308_03940"
     CDS             complement(2891..>3122)
                     /locus_tag="VF308_03940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435832.1"
                     /translation="LAFMVLGGGTFAIGSALFGFDRPAAPVQLQSAVVELPRVEITGR
                     RASVVMAARNDVDPGSKTRVECGVAPQQPRHI"
BASE COUNT          470 a         1068 c         1065 g          519 t
ORIGIN      
        1 atggtggcca aggcgccggc ggatgggtac acgctgatgg tgcattccgc tgcgcaggcg
       61 gtgaacccct tcatctaccc gagcctgccc tacgatacgc tgaaggattt cgtccaggtc
      121 gttccgctcg gcggtcagcc caacgtgctg gtggtcgcgg cggcgagtgg ctaccgcacg
      181 gtggccgatc tcatcgccga cgcaaggaaa cggcctggtg gcctgaactt cggctcggcc
      241 ggcatcggca gcggcaccca catcaacggc gagaagttca agctcgcggc cggcatcgat
      301 gccgtccata ttccctacaa gggtacgccc gaagcgctga ccgacacgtt ggcagggcgc
      361 atcgcatttt tcttctcacc gatctcggca gccctgcccc atgtgcgcga cggcaaactg
      421 ctggcgctgg ccgtcagttc ggccaagcgc tcgagcgtgc tgccaaacgt gccgaccgtc
      481 gccgagtccg ggctgccgaa cttcgactac aacttgtggg tcggcgtgtt tgcgccggca
      541 gggacgccgg ccgacgtcgt cgaaaagatc aaccgggatg tcaatcgcgt gctgcgcgag
      601 ccggaggtca aggagcggat gacagcactt ggcgccgagg ccatgccgat gagcccggcc
      661 gagttcgaca aattcgtgcg caatgagatg gacgacgcgg cgaaggtggt caaagccgcc
      721 ggcatcaagg tgcagtagag agcaggacct ctcactctcc cagctcgccc tcaagggaga
      781 tggttcgctg cggcccgtca ctgccagggc ggtgtggctg aacaatcttg ctgatcagga
      841 gcgccgttga gctcaatccg ccgcgcgccc ttcgtttgcg gctcgaatcc cgtcgttcgt
      901 cgcggcgggg cgccggcggg gtcgacgcga ctcggccgcg gcgctatcgt gccgcgatga
      961 atcccctgca ccccgcaccg gcagcgccgt ccgcgttacc gcgcacgctc gtgtcggcct
     1021 tcacgttgcg ccgggtcgcc atcgcgctcg gcctggcggt cgtcctcgcg gcgctgctga
     1081 acccggtctt cgtgacaccg tttgtggtgc tgcccggccg catgatcgtg atcgcgatgc
     1141 tgctgctgct cgccttcacg ctcgccggcg tctggaagac cccgggcctg ccgcgctagc
     1201 tggcgcaagt gctcgcggtc gtgatcgtcg ccccgctcgc gacctatctg gtctatctgc
     1261 cgtcgatcgg cttcatggcc gagccgatgc ggcacgaggg cttcgtcctc ggctacacct
     1321 tcatcaccgg ttccgcactc gttatcgggc ccttgctcgc gctcggcgcg ctctaccgcg
     1381 agcgcgacgc ccaggcccag gccctgcgct tcgaactcga acgcagcacg ctcgaaaagc
     1441 aggcgctcga cgcacgcctg aaactgctcc atgcccaggt cgagccgcat ttcctcttta
     1501 acaccctcgc caatgtgcag gcgctggtcg agtcgggctc gccgcgggcc gcgccggtgc
     1561 tgcgcaacct gatcgcctat ctgggcgcgg cgatgcccag gctgcaggcg gacaagccga
     1621 cgctcggcgc cgaagccgaa ctcgtccgcg cctatctcaa gttgatgcac atgcgcatgc
     1681 ccgaccggct gcgcttcgag atcgacatgc cggccgagct cgcgggcctg agctttccgc
     1741 cgatggccct gctgacgctg atcgagaacg cgatccggca cggcatcgac cccggcgagg
     1801 cgggcgggcg catcggcgtg cgcgcccgtc gcgatgcggc gggcggaccg gtccacgtgg
     1861 tcatggccga cagcggtgtc ggcatgagcg agagcgcctc ggcgggcgcc ggcctggcca
     1921 atctgcgcga ccggctgcgc gccttctacg ggcccgaagc gcgcctcgac ctgcacgagg
     1981 aagcgcccca cggggcgcgc gccgagatcg tcttcatgcc ggccccggag ggcggtgcat
     2041 gagccatccg cccggccgcc cgaaggatgg ctcgctcccg ctcggcggga ccgcgcgtag
     2101 cgcgagggtg cctcaatgag cggcccgacc gcgttgatcg cggatgacga accgctcctg
     2161 cgcgagcgcc tgcgcgcgca cctggcgcgc ttgtggcccg aactcgaaat cgtcgccgaa
     2221 gcgcacaacg gccgcgaggc ggtcgagctc ttcgacatcc atctgctgcg gatcgtgttt
     2281 ctcgatgtgc agatgccggg gctgaacggc gtcgaggcgg cgcgttcggt ggcgcgtcgc
     2341 gccgaggtcg tcttcgtcac ggcgtacgag cagtatgcgt gcaggccttc gcgcagggcg
     2401 cgctcgacta cctcgtcaag cctttcgacg tcgatcgcct cgccgatacg gtgcagcgct
     2461 tgaaggatag gctggcgcgg ccttcgatcc cgggcgaagg cccgctcgat accgtgctgg
     2521 aggccttgtc ggcggagttg aagcggcgcg tgggcgccgc tgcggcgagc cggcgccacc
     2581 tgcagtggat caaggcctcg gtgggcacga gcctgcgcct gatcccggtc gaacagatcg
     2641 cgttcctgcg ctccgacgag aaatacacgc tcgtcgtctg ggagggcggc gaggcgctga
     2701 tcaggaagac gattcgcgaa ctcgccgatg aactcgatcc ggaatcgttc gcccagatcc
     2761 accgatcggt gttcgtcaac ctgcgtcggg tgagccaggt cgatcgcggc gtgaacgaga
     2821 ctgccgaggt gaggttgaag gatcgcaagg acgtgctgcc ggtgagccgc agcttcgtcc
     2881 gcgtgttggg tcagatgtga cgcggctgct gcggtgcgac gccgcactcg acgcgagtct
     2941 tcgaacccgg atcgacgtcg ttgcgcgccg ccatcacgac gctcgcgcgc cgtcccgtga
     3001 tttcgacgcg tggcagttcg accacggcgc tctgaagctg caccggcgcg gccgggcggt
     3061 cgaatccgaa cagcgccgag ccgatcgcga acgtgccgcc gccgagcacc atgaaggcga
     3121 gt
//
LOCUS       DASVHM010000198         2959 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_375263, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000198 DASVHM010000000
VERSION     DASVHM010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2959
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375263"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            261..1454
                     /locus_tag="VF308_03945"
     CDS             261..1454
                     /locus_tag="VF308_03945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435833.1"
                     /translation="MSQRFVHHAAAVALAWALPFLAIDAQGADKVKVGLVSTLSGPSS
                     ALGVDIRDGFLLAVKLADGKLGGLPAEVLVSDDQFKPDVAKQLFEKNIKRDKVDFMTG
                     VVFSNIMLAALPEALDSNTFYISPNAAPSSMAGKDCNPLFFAVSWPNDAYHEAAGQFA
                     NQRELKSVYLVAPNYQAGKDSLAGFKRTFKGTVAGENYTKLGQLDYAAELAEIRAAKP
                     QAVYIFLPGGMGINFIKQYVGAGLGKDTTLLLPGFSADQDVINPVGPSMAGLFNTAHW
                     SPDFTNPANLKFMAEFQKEYKRVPTLYASQGYDAALLIGAAVRDTKGKLEDHDAVRRA
                     LKAARFDSVRGPFRFNTNQYPIQNYYVRTIGSDGKGGLINKSFNQPILRDHGDAYVQN
                     CPMKN"
     gene            1473..2390
                     /locus_tag="VF308_03950"
     CDS             1473..2390
                     /locus_tag="VF308_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017523481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435834.1"
                     /translation="MAGVLVLEQALNGLQFGLMLFLLAAGLTLVFGVMDMINLAHGSL
                     YMVGAFLAAWLVGLTGSFVWGVLGAVALTGLFGMVLEAGLLRSLYARDHLSQVLATFA
                     LILILNDGVKMIFGNDLQLSAPEALAGPVQLLPGLQYPAYRLLILGVGLVLALLLYLL
                     VQKTRLGALVRAGASNRQMATAMGTDIPRLFTLVFGIGAALCAVAGALLGPLLAVQVG
                     MGENILILAFVVIVIGGIGSIRGALVGAILVGCIDTLGRTLLQHVFREFLPPQWASAA
                     GPAFASVAVYVFMAAVLAIKPQGLFPARS"
     gene            2390..>2959
                     /locus_tag="VF308_03955"
     CDS             2390..>2959
                     /locus_tag="VF308_03955"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435835.1"
                     /translation="MAVPALEGARHPALAPSRVAVAMVCVTALALPWILQAFGAAFYL
                     SLASRIVVYAIAATSLNLVLGYGGMVSFGHAAFVGLGAYVTGVMISEGVTGGGWHLLA
                     TLAITALAALVIGAISLRTRGVYFIMITLAFAQMLFYLANSVKGYGGDEGLNIRARSL
                     LGFGLDLKNPMIFYYVALAVLAATMLALAR"
BASE COUNT          430 a         1056 c          947 g          526 t
ORIGIN      
        1 ggagctgcgg cgcgacgacg tgcgccattt cggcggcagc taccggcaca cgctggttcg
       61 cgatgccgcc ggcgccctgc gcatccgcct gcagcgcgtc gacctgttca attcgcaggc
      121 gacgttcgat tacgtgctgc agatctgggt ctagcgctta cgcggggggc gcctgcgttg
      181 ggtcggcgca ggcctcctcc ctacaatccc gcagcgcatt ccggtccacc ttcccgaacc
      241 cgtacgaaag gtctcgcacc atgtcccagc gtttcgtgca ccacgccgcc gcagtcgccc
      301 tggcttgggc tcttccgttc ttggcgatcg acgcgcaggg cgccgacaag gtcaaggtcg
      361 gactggtgag cacgctctcg ggcccgtcgt cggcgctcgg ggtcgacatc cgcgacggct
      421 tcctgctcgc ggtcaagctc gccgacggca agctcggcgg cctgccggcc gaggtgctgg
      481 tgagcgacga ccagttcaag cccgacgtcg ccaagcagct cttcgaaaag aacatcaagc
      541 gcgacaaggt cgacttcatg accggcgtcg tgttctccaa catcatgctg gccgcgctgc
      601 ccgaagcgct cgacagcaac accttctata tcagcccgaa cgcggcgccc tcgtcgatgg
      661 ccggcaagga ctgcaacccg ctcttcttcg cggtctcgtg gccgaacgac gcataccacg
      721 aggccgcggg ccagttcgcg aaccagcgcg agctgaagag cgtgtacctc gtggcgccga
      781 actaccaggc cggcaaggat tcgctcgccg gcttcaagcg caccttcaag ggcacggtcg
      841 ccggcgagaa ctacaccaag ctcggccagc tcgactacgc cgccgagctc gccgagatcc
      901 gggccgccaa gccgcaggcg gtctacatct tcctgccggg cggcatgggc atcaatttca
      961 tcaagcagta cgtcggcgcc ggactcggca aggacacgac gctgctcttg cccgggttca
     1021 gcgccgacca ggacgtgatc aacccggtcg gcccgtcgat ggccggcctc ttcaacaccg
     1081 cgcactggtc gcccgacttc acgaacccgg ccaacctgaa gttcatggcc gagttccaga
     1141 aggaatacaa gcgcgtgccc acgctttatg cctcgcaggg ctatgacgcc gcgctgctga
     1201 tcggcgccgc ggtgcgcgac acgaagggca agctcgagga ccacgacgcg gtgcgcaggg
     1261 cgctgaaggc ggcgcgcttc gactcggtgc gcgggccgtt caggttcaac accaaccagt
     1321 acccgatcca gaactactac gtccgcacca tcggcagcga cggcaagggc ggcctcatca
     1381 acaagtcgtt caaccagccg atcctgcgcg accacggcga tgcctacgtg cagaactgcc
     1441 cgatgaagaa ctgatccgga cgggaccgac ccttggccgg cgtcctcgtc ctcgagcagg
     1501 ccttgaacgg cctgcagttc ggcctgatgc tgttcctgct cgccgccggg ctgacgctgg
     1561 tcttcggcgt catggacatg atcaacctcg cccacggctc gctctacatg gtgggcgcat
     1621 ttctcgccgc gtggctcgtc gggctcaccg gctcgttcgt ctggggcgtg ctaggcgccg
     1681 ttgccctgac cggcctcttc ggcatggtgc tcgaggccgg gctgctgcgt tcgctctatg
     1741 cgcgcgacca cctgtcgcag gtgctcgcca ccttcgcgct gatcctcatc ctcaacgacg
     1801 gggtgaagat gatcttcggc aacgacctgc agctctcggc gcccgaggcg ctcgccggcc
     1861 ctgtccaact gttgcccggc ctgcagtacc cggcctaccg gttgctgatt ctcggcgtcg
     1921 gcttggtgct cgcgctgctg ctctacctcc tcgtgcagaa gacacgcctg ggcgccctgg
     1981 tgcgcgcggg agcctcgaac cggcagatgg cgaccgcgat gggcaccgac ataccgcggc
     2041 tcttcacgct cgtgttcggc atcggtgcgg cgctctgcgc ggtggccggc gcgctgctcg
     2101 ggccgctgct cgcggtgcag gtcggaatgg gcgagaacat cctgatcctc gccttcgtcg
     2161 tgatcgtgat cggcggcatc ggttcgatcc gcggggcgct cgtcggcgcc atcctcgtcg
     2221 gctgcatcga cacgctcggc cgcacgttgc tgcaacacgt gtttcgcgaa ttcctgccgc
     2281 cgcagtgggc gagcgccgcg ggcccggcgt tcgcctcggt cgcggtgtac gtgttcatgg
     2341 ccgcggtgct ggcgatcaag ccgcagggcc tcttcccggc gcgcagctga tggccgtgcc
     2401 ggccctcgaa ggcgcgcggc atcccgcact cgccccgagc cgcgtcgcgg tcgccatggt
     2461 ctgcgtcaca gcgctggcac tgccgtggat cctgcaggcg ttcggcgccg ccttctacct
     2521 cagcctcgcc agccgcatcg tcgtctacgc gatcgccgcg accagtctca atctcgtgct
     2581 cggctacggc ggcatggtgt cgttcggcca tgccgcgttc gtcggcctcg gcgcctacgt
     2641 gaccggcgtc atgatcagcg agggcgtgac cggcggcggc tggcacctgc tggccacgct
     2701 ggcgatcacg gcgctggcgg cgctcgtgat cggcgcgatt tcgctgcgca cgcgcggcgt
     2761 ctacttcatc atgatcacgc tcgccttcgc ccagatgctt ttctacctgg ccaactcggt
     2821 caagggctac ggcggcgacg agggcctcaa catccgcgcc cgctcgctgc tcggcttcgg
     2881 cctcgatctg aagaatccga tgatcttcta ctacgtcgcg ctcgcggtgc tggcggcgac
     2941 gatgctcgcg ctggcgcgc
//
LOCUS       DASVHM010000199         3118 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_158078, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000199 DASVHM010000000
VERSION     DASVHM010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3118
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158078"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..216)
                     /locus_tag="VF308_03960"
     CDS             complement(<1..216)
                     /locus_tag="VF308_03960"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX7435836.1"
                     /translation="MSFPSRIPFVESLGFEFVRWHAGEAEIAVTLRDELCNAWSVVHG
                     GVTMTLLDVVMAHAARSPGQAGIAEPRG"
     gene            complement(230..1021)
                     /locus_tag="VF308_03965"
     CDS             complement(230..1021)
                     /locus_tag="VF308_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7435837.1"
                     /translation="MSTPVLKLFDLTGKTALVTGGSRGLGLQIAEALGEAGAKVLLTS
                     RKASDLEEAAALLQDKGIDARWVAADASQPAEITRVAADAMQRLGQVDILVNNAGATW
                     GAPAEDYPLEAWDKVMNLNIRSIFLMSQAIGNASMIPRKSGRIINIASIAGLAGNTAE
                     MTMIAYNTSKGAVVNFTRTLAGEWGKHNITVNAIAPGFFPSRMTKGVLQQFGAENMAK
                     RAPLLRLGDDDDLKGAVLLFASRAGKHITGQILPVDGGVSAIHSA"
     gene            complement(1226..3088)
                     /locus_tag="VF308_03970"
     CDS             complement(1226..3088)
                     /locus_tag="VF308_03970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007874489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEX7435838.1"
                     /translation="MTYRQTADFLLYDWLDVESLATRPRFADHSRETFASVMDTCEKI
                     AREKYAPYNRLTDTEEPWFDGEKVHLPEASHVAARAYAESGMLAAAQDYEIGGMQLPC
                     VVEMAANSFFSKAGIGVGGGGMLTSGNENLLMVHGTAAQQAAFATNEFSGRFSGTMCL
                     SEPQAGSSLSDVATRALPDGPGFESDPLGPRYRLRGNKMWISNGEHELSENIVHLVLA
                     KIPGPDGKLIPGTKGISLFIVPKKLVNPKGELTGERNDVALAGLNHKLGYRGIPNTLL
                     NFGEGKFPVRPGAGGAPDGAGAIGYLVGKPHEGLRCMFHMMNEARIAVGLGATMLGYA
                     GYEASLDYAKNRPQGRPTGVGGKDPTRPQVPIIRHADVKRMLLAQKSYCEGALALELY
                     CARLVDELHTGAPQASAEASLLLEMLTPIAKSWPSEWCLEANSLAIQVLGGYGYTRDF
                     PVEQYWRDNRLNMIHEGTHGIQALDLLGRKVVMQGGAGLAALAGRIEATIARTRGVAA
                     LAAHADALVAALAHLISATHAAWATGDPEEALANATPYLQAFGHTVLAWIWLDVAICA
                     QAATTGSKTDDALARGLLAACTYFFGYELPRIGAWLKVVESRDDTCRTMAEEWF"
BASE COUNT          484 a         1038 c         1082 g          514 t
ORIGIN      
        1 cccccgcggt tcggcgattc cggcctgacc ggggctgcgc gcagcgtgcg ccatcacgac
       61 gtcgagcagg gtcatcgtca cgccgccatg cacgacgctc catgcgttgc agagttcatc
      121 gcgcagcgtc accgcgatct ccgcttctcc ggcgtgccag cgcacgaatt cgaagccgag
      181 cgattcgacg aacggaatgc gagacggaaa actcacggcc tgcgaccggt cacgcggaat
      241 ggatcgccga gacgccgccg tcgaccggca ggatctgacc ggtgatgtgc ttgccggccc
      301 gcgaggcgaa cagcagcacc gcgcccttca aatcgtcgtc gtcgccgagg cgcagcagcg
      361 gcgcgcgctt ggccatgttt tcggcaccga actgctggag cacgcccttg gtcatgcggc
      421 tcgggaagaa gccgggggcg atcgcattga cggtgatgtt gtgcttgccc cattcgcccg
      481 cgagcgtgcg cgtgaagttg acgacggccc ccttgctggt gttgtaggcg atcatcgtca
      541 tctcggcggt gttgcccgcg aggcccgcga tcgaggcgat gttgatgatg cggcccgact
      601 tgcgcgggat catgctggcg ttgccgatcg cctggctcat caggaagatg ctgcggatgt
      661 tgaggttcat caccttgtcc cacgcctcca gcgggtagtc ctcggccggg gcgccccagg
      721 tggcgccggc gttgttgacg aggatatcga cctggccgag acgctgcatc gcgtcggcgg
      781 cgactcgggt gatctcggcc ggctggctcg cgtcggcggc gacccagcgc gcgtcgatgc
      841 ccttgtcttg cagaagggcg gcggcctcct cgagatcgga ggccttgcgc gaggtcagca
      901 ggaccttcgc gcctgcctcg cccagcgcct cggcgatctg caggccgagc ccgcgcgagc
      961 cgccggtgac gagagcggtc ttgccggtga ggtcgaacag cttcaggacg ggagtgctca
     1021 tcgcgtgctt tcaaggtaga gggaagaagg aggcggacgc ctgccgcgcc gcgcagcgga
     1081 ccatgcgggc gcggaccccg atcaggaagg cgccgaccgc ggccatgacg actccggcga
     1141 cgcaacgcaa ggccgacggc cacgagcagg aagccgccat agatcaggac ccaggtcagc
     1201 acctcgaccc tggcgacgct cagcttcaaa accactcctc ggccatcgtc cggcaggtgt
     1261 cgtcgcggct ctcgacgacc ttgagccagg ccccgatgcg cggcaactcg tagccgaaga
     1321 aataagtgca ggcggcgagc agcccccgag ccagcgcgtc gtcggtcttc gacccggtcg
     1381 tggcggcctg cgcgcagatc gcgacatcga gccagatcca ggcgagcacg gtgtggccga
     1441 aggcctgcag gtagggcgtc gcattggcga gcgcttcttc cgggtcgccg gtcgcccagg
     1501 cggcatgggt cgccgaaatc aaatgggcga gcgccgcgac gagcgcatcg gcgtgcgcgg
     1561 cgagcgccgc gacgccgcgt gtgcgggcaa tcgtcgcctc gatcctgccg gcgagggcgg
     1621 cgaggcctgc cccgccctgc atcaccacct tgcgtcccaa gaggtcgagc gcctgaatgc
     1681 cgtgggtgcc ctcgtggatc atgttgaggc ggttgtcgcg ccaatactgc tcgaccggga
     1741 agtcgcgggt gtagccgtag ccgccgagca cctggatcgc caggctgttg gcctcgaggc
     1801 accattcgct cggccagctc ttcgcgatcg gcgtcagcat ttccagcagc agcgatgcct
     1861 cggccgatgc ctggggggcg ccggtgtgca gttcgtcgac caggcgcgcg cagtaaagct
     1921 cgagcgcgag cgcgccctcg cagtagctct tttgcgcgag cagcatgcgc ttgacgtcgg
     1981 cgtgccggat gatcggcacc tggggccgcg tcggatcctt gccgccgact ccggtcggcc
     2041 ggccctgcgg ccggttcttc gcgtagtcga gcgaggcttc gtagccggca tagccgagca
     2101 tcgtcgcgcc caagccgacc gcgatgcgcg cctcgttcat catgtggaac atgcagcgca
     2161 agccttcgtg cggcttgccg acgaggtagc cgatcgcgcc ggcgccatcc ggcgcgccgc
     2221 ccgcgccggg ccgcaccggg aacttgccct cgccgaagtt gagcagcgtg ttcggaatgc
     2281 cccgatagcc gagcttgtga ttgaggcccg cgagcgcgac gtcgttgcgt tcgccggtca
     2341 gctcgccctt cgggttcacg agcttcttcg ggacgatgaa gagcgagatg cctttggtgc
     2401 cgggaatgag cttgccgtcc ggcccgggaa tcttggccag cacgagatgg acgatgttct
     2461 ccgacaactc gtgttcgccg ttcgagatcc acatcttgtt gccgcgcagc cgatagcgtg
     2521 gcccgagggg atcgctttcg aaaccgggcc catcgggaag cgcgcgcgtg gccacgtccg
     2581 acaggctcga gccggcctgc ggctccgaca ggcacatcgt gcccgagaag cgcccggaga
     2641 attcgttcgt ggcgaaggcg gcctgttgcg ccgccgtgcc atgcaccatc aacaggttct
     2701 cattgccgct cgtcagcatg ccgccgccgc cgactccgat gccggctttc gagaagaagc
     2761 tgttggcggc catctcgacg acgcaaggca actgcatgcc gccaatctcg tagtcctgcg
     2821 ccgcggcgag catgcccgat tcggcatagg cgcgggccgc cacgtggctt gcctcgggca
     2881 agtgcacctt ctcgccgtcg aaccagggct cctcggtgtc ggtgagacgg ttgtaaggcg
     2941 cgtacttctc gcgcgcgatc ttctcgcagg tgtccatcac cgacgcgaag gtctcgcgcg
     3001 aatggtcggc aaagcgcggg cgcgtcgcca gcgactcgac atcgagccag tcatagagca
     3061 ggaagtcggc ggtctggcgg tacgtcatgg tgcagtctgc cgcggggtcg gagaacgc
//
LOCUS       DASVHM010000200         2131 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_86826, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000200 DASVHM010000000
VERSION     DASVHM010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86826"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..400
                     /locus_tag="VF308_03975"
     CDS             <1..400
                     /locus_tag="VF308_03975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435839.1"
                     /translation="MRDATRRYDVVLLDAFGPQGVPRQLSTQRFYDDCLDALEPGGVL
                     VSNFHSAASDFDACVRRIERSFDEAPLVVQDREAGNSIVFARKGGPLAGLRTPLVTCP
                     KGLEEGAWAQLRGAFERIGSALAARGRMRL"
     gene            438..>2131
                     /locus_tag="VF308_03980"
     CDS             438..>2131
                     /locus_tag="VF308_03980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008333476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7435840.1"
                     /translation="MSMVQLALRRPYTFIVMALLIVLATPFALLNMATDIFPEINIPV
                     ISIVWNYGGLSAQEMGSRIAAQNERSLTTTVSDIEHIESQSLASISIIKVFFQPTANI
                     QTAIAQVVAIEQAQLRQLPPGITPPLIIKYSASSIPVVQLGLSSATLSEQSLFDAAVN
                     TLRPQLITIPGVAVPFPYGGKNRLISVDLDTQALQARGLAPADVVNAVNLQNLILPSG
                     TAKIGSTEYTVRMNGSPDAIAGLNDLPVRTTGGTTTYLRDVAFVRDGFSPQTNIVRQD
                     GQRGVLLSVLKNGGASTLDIVANLRALLPSVAQILPPDVKIAALFDQSVFVKAAVKGV
                     VAEALIAAALTAAMVLLFLGNWRSTLIIALTIPLSILASILILQALGETLNLMTLGGL
                     ALSVGILVDQAIVTIENIERHLHMGTALEEAIGVGAGEIGVPAFVSTLCICIVFVPMF
                     FLTGVARFLFVPLAEAVVFAMIASYLLSRTLVPTLVMLLMRGTGHAGTARVAGAAGAA
                     PRSSPLQRLYRAFDRQFEHVRRAYTLALSALLARRAAFAWGFLAFCLLSCGLYPVLG"
BASE COUNT          309 a          742 c          704 g          376 t
ORIGIN      
        1 catgcgcgac gccacgaggc gctacgacgt cgtgctgctg gacgcattcg gcccgcaagg
       61 cgtgccgcgc cagctgagca cgcagcgctt ctacgacgat tgcctcgacg cgctcgaacc
      121 tggcggcgtg ctggtctcga actttcacag cgcggcgagc gacttcgatg cctgcgtgcg
      181 gcgcatcgag cgcagcttcg acgaggctcc gctcgtggtc caggaccggg aggccggcaa
      241 cagcatcgtc tttgcgcgca agggcggccc cctcgccggc ctgcgcacgc cgctcgtgac
      301 ctgtccgaag ggtctcgagg aaggcgcctg ggcccagttg cgcggcgcct tcgagcggat
      361 cggcagcgcg ctcgcggcgc gagggcggat gcggttgtga atatgatcgc agcgatccgc
      421 aaccggtagt aagcctcatg tcgatggtcc agctcgccct gcggcgcccg tacacgttca
      481 tcgtgatggc gctcctgatc gtgctggcga cgccgttcgc gctgctgaac atggcgaccg
      541 acatctttcc cgagatcaac atcccggtca tcagcatcgt ctggaactac ggcggcctgt
      601 cggcgcagga gatgggatcg cgcatcgcgg cgcagaacga acgcagcctg acgacgacgg
      661 tgagcgacat cgagcacatc gagtcgcagt cgctcgccag catctcgatc atcaaggtct
      721 tcttccagcc gaccgcgaac atccagaccg cgatcgccca ggtcgtcgcg atcgagcagg
      781 cccagttgcg ccagctcccg cccggcatca cgccgccgct gatcatcaag tactcggcat
      841 cgagtattcc ggtcgtgcag ctcgggctgt cgagtgcgac cttgtcggaa cagtctttgt
      901 tcgatgccgc ggtcaacacg ctgcgcccgc agctgatcac gatccccggc gtggccgtgc
      961 cgtttccata cggcggcaag aaccgcctga tctcggtcga tctcgacacc caggcgctgc
     1021 aggcgcgcgg cctggccccg gccgacgtcg tcaacgcggt caacctgcag aacctgatcc
     1081 tgccgtcggg caccgcgaag atcggctcga ccgagtacac ggtgcgcatg aacggctcgc
     1141 ccgacgcgat cgccgggctg aacgacctcc cggtgcgcac gacgggcggc acgacgacct
     1201 acctgcgcga cgtcgccttc gtgcgcgacg gtttctcgcc gcagaccaac atcgtgcgcc
     1261 aggacggcca gcgcggggtg ctgctctcgg tgctgaagaa cggcggcgcc tcgacgctcg
     1321 acatcgtcgc gaacctgcgc gcgctgctgc cgagcgtggc gcagatcctg ccgcccgacg
     1381 tgaagatcgc ggcgctcttc gatcagtcgg tgttcgtcaa ggccgcggtg aagggcgtgg
     1441 tcgccgaggc gctgatcgcc gccgcgctga ccgccgcgat ggtgctgctc tttctcggca
     1501 actggcgttc gacgctgatc atcgcgctaa cgattccgct ctcgatcctg gcgtcgatcc
     1561 tgatcctgca ggcgctcggc gagacgctga acctgatgac gctcggcggc ctcgcgcttt
     1621 cggtcgggat cctcgtcgac caggcgatcg tgacgatcga gaacatcgaa cgccacctgc
     1681 acatgggtac cgcgctcgaa gaggcgatcg gggtcggcgc cggcgagatc ggcgtgccgg
     1741 cgttcgtctc gacgctgtgc atctgcatcg tcttcgtgcc gatgttcttc ctgacaggcg
     1801 tcgcgcgctt cctgttcgtg ccgctcgccg aagcggtggt gttcgcgatg atcgcgtcgt
     1861 acctgctctc acgcacactg gtgccgactc tggtgatgct gctgatgcgc ggcaccgggc
     1921 acgccggcac ggcgcgcgtt gccggcgctg ccggcgcggc gccgcggtcg agcccgctgc
     1981 agcgcctata ccgcgccttc gaccggcagt tcgagcacgt gcggcgtgcc tacacgctgg
     2041 cgctatcggc gctgctcgcg cggcgcgccg cgttcgcatg gggctttctc gccttctgcc
     2101 tgctttcctg cgggctctat ccggtgctcg g
//
LOCUS       DASVHM010000201         3060 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1313704, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000201 DASVHM010000000
VERSION     DASVHM010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3060
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1313704"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..654)
                     /locus_tag="VF308_03985"
     CDS             complement(<1..654)
                     /locus_tag="VF308_03985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016445091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7435841.1"
                     /translation="MIEALIRWSIVNRFLVLLLTLFISAWGVWAVRTTPIDALPDLSD
                     VQVIIRTSYPGQAPQIVENQVTYPLATTMLSVPGAKTVRGFSFFGDSFVYVLFEDGTD
                     LYWARSRVLEYLNQVQGRLPASAKTSLGPDATGVGWIFQYALVDRSGRHDLSELRALQ
                     DWFLKYELKSVPDVAEIATVGGMVREYQVVLDPARLRAYGISHARVVAAIEGANREAG
                     "
     gene            complement(651..1922)
                     /locus_tag="VF308_03990"
     CDS             complement(651..1922)
                     /locus_tag="VF308_03990"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX7435842.1"
                     /translation="MNTVTFTWGSVAVAAIGVALVAAGAGYGVASWRSQAGGAQGSAA
                     SAHLSASAPSVDGRKVLYWYDPMKPEARFDKGGKSPFMDMDLVPKYAEEVSSGGVQVD
                     PRLAQSLGLRLAPVTREVVATGIDAVGTLGFDERDVAIVQTRSAGFVERVYARAPGDV
                     VAAGAPLVDVLVPEWAGAQQEYLAVRATGEPALAAAARQRLVLLGMSEGLIRDVERSG
                     RPHQVMTITSPTGGVIQELMVRAGMSLAPGMTLARINGLGTMWLEVAVPEVHAALLSP
                     GRPVKATFAAYPGEAFDGRIAVVLPETSRETRTLRVRIELPNRSGKLKAGMYAQASIG
                     GQPQEALVVPSEAVIRTGRRAVVFVAGDKPGQFSPVEVELGREVGSKLIVLKGLAAGQ
                     QVVASGQFLIDSEASMSGTVQRAAAGKETGK"
     gene            complement(1922..>3060)
                     /locus_tag="VF308_03995"
     CDS             complement(1922..>3060)
                     /locus_tag="VF308_03995"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX7435843.1"
                     /translation="TERAPMLAARQASVDAALQLRISADQLPDPRLTAGIDNFPIGGP
                     DRFALARDSMTQRSIGWMQDVPNNAKRAARAQGAEARAERERALMDAERLGIQREVAQ
                     AWLARYFVERQLALFQTLEDENRLLRDTVASRIAGGRAVPADATMARQEALLLADRRD
                     ELARERAKALATLQRWLGDAATQALAGAPPALQVEPDILHRGIEQHADLRVFEPMARM
                     TNAEALELEAAKKGDWNWQVGYSKRGPAYGDMVSFQFSFELPLWHEKRQDPQIAAKRK
                     EAERIGAEREDLLRRRREEIDMQLAELDELTRKLDRLKASAAPLATERVTLSMAAYES
                     ARGDLAAVLGARRERAELGLRAIELEARQFALRAKLNYLIAEQR"
BASE COUNT          438 a         1133 c         1021 g          468 t
ORIGIN      
        1 gccggcttcg cgattcgcgc cctcgatcgc cgcgaccacg cgcgcatggg aaattccata
       61 ggcccgcaac ctcgcgggat cgaggacgac ctggtactcg cgcaccatgc cgccgacggt
      121 cgcgatctcg gccacgtcgg gcacgctctt cagctcgtac ttgaggaacc agtcctgcag
      181 cgccctcagc tcggaaagat cgtgtcggcc gctgcggtcc accagcgcgt actggaagat
      241 ccagccgacg ccggtggcgt cgggcccgag cgaggtcttg gcgctggccg gcaggcgccc
      301 ctgcacctgg ttcaggtact cgagcacgcg cgagcgcgcc cagtacaggt cggtgccgtc
      361 ttcgaagagc acgtagacga agctgtcgcc gaagaatgaa aagccacgca ccgtcttcgc
      421 gccgggcacc gagagcatgg tcgtcgccag cgggtaggtg acctggttct cgacgatctg
      481 cggtgcctgt cccgggtagc tggtgcggat gatgacctgc acgtcggaca gatcgggcag
      541 cgcgtcgatc ggcgtggtcc gcacggccca caccccccag gcgctgatga acagcgtcag
      601 caacagcacc aggaagcggt tgacgatcga ccagcggatc agcgcttcga tcatttgccc
      661 gtctccttgc ccgcggccgc gcgctggacc gtgccggaca tgctggcctc ggagtcgatc
      721 aggaactgcc cggaggcgac gacctgctgg cccgcggcca ggcccttcag gacgattagt
      781 ttgctgccga cctcgcgccc gagttcgacc tcgaccgggc tgaactgccc gggtttgtct
      841 ccggcgacga agaccacggc gcgccggccc gtgcggatca cggcctcgct cggcaccacc
      901 agcgcttcct gcggctggcc gccgatcgag gcctgcgcat acatgccggc cttgagcttg
      961 cccgagcggt tgggcagttc aatgcgcacg cgcagcgtgc gagtctcgcg gctggtttcg
     1021 ggcagcacca cggcgatgcg cccgtcgaac gcttcgccgg ggtaggccgc gaacgtcgcc
     1081 ttcaccggcc ggcccgggct cagcaaggcg gcatgcactt caggcacggc cacctcgagc
     1141 cacatcgtgc cgaggccgtt gatgcgcgcc agcgtcatgc ccggggcgag cgacatgccg
     1201 gcgcgcacca tcagctcctg gatcacgccg ccggtcgggc tggtgatggt catcacctga
     1261 tgcggccgcc cgctgcgttc cacgtcgcga atcagtcctt cggacatgcc cagcagcacg
     1321 agccgctggc gcgccgccgc ggcaagagcg ggctcgccgg tggcgcgcac ggccaggtat
     1381 tcctgctgcg cgccggccca ttcgggcacc agcacgtcga ccagcggcgc accggccgcc
     1441 accacgtcgc cgggcgctcg ggcgtacacc cgttcgacga agccggcgga ccgggtctgc
     1501 acgatcgcca catcgcgctc gtcgaaaccg agcgtgccga cggcgtcgat gcccgtcgcc
     1561 acgacttcgc gcgtgaccgg cgcgaggcgc aggcccaggc tctgcgccag acgcggatcg
     1621 acctgcacac cgccgctgct cacctcctcg gcgtacttcg gcaccagatc catgtccatg
     1681 aagggcgact tgccgccctt gtcgaaacgc gcttcgggct tcatcgggtc gtaccagtac
     1741 agcaccttgc ggccgtcgac gctgggcgcg ctggcggaaa ggtgggccga cgccgcgctg
     1801 ccctgcgcgc cgcccgcctg actgcgccag ctggccacgc cgtaaccggc gcccgccgcc
     1861 accagcgcca ccccgatggc cgccacggcg accgaccccc acgtgaacgt caccgtgttc
     1921 atcagcgttg ctccgctatc aggtagttca gcttggcgcg cagtgcgaac tgccgggcct
     1981 cgagttcgat cgcccgcagg ccgagctcgg cacgctcgcg gcgcgcgccc agcaccgcgg
     2041 cgagatcgcc gcgcgccgac tcataggccg ccatcgacag cgtcacgcgc tccgtcgcca
     2101 gcggcgcagc cgatgccttg agccggtcga gcttgcgcgt cagctcgtcc agctcagcca
     2161 gctgcatgtc gatttcctcg cggcgccggc gcagcaggtc ttcgcgttcg gcgccgatgc
     2221 gctcggcctc cttgcgcttg gccgcgatct gcgggtcctg ccgcttctcg tgccagagcg
     2281 gcagctcgaa gctgaactgg aacgacacca tgtcgccata ggccgggccg cgcttcgaat
     2341 acccgacctg ccagttccag tcgcccttct tcgccgcttc cagttccagc gcttcggcat
     2401 tcgtcatccg ggccatcggc tcgaagacgc gcaggtcggc atgctgctcg atgccgcggt
     2461 gcaggatgtc gggctcgacc tgcagcgcgg gcggagcgcc ggcgagcgct tgcgtcgccg
     2521 catcgcccaa ccaacgctgc agtgtggcca gcgccttggc gcgctcgcgc gcgagttcgt
     2581 cgcggcgatc ggccaggagg agcgcctcct ggcgtgccat cgtggcgtcg gccggcaccg
     2641 cccggccgcc cgcgatgcgc gatgccaccg tgtcgcgcaa caggcggttc tcgtcctcca
     2701 gggtctggaa caacgcaagc tggcgttcga cgaagtagcg cgcgagccac gcctgcgcca
     2761 cttcgcgctg gatgcccagt cgttcggcgt ccatcagcgc gcgttcccgc tcggcacgcg
     2821 cttcggcgcc ctgcgcgcgg gccgcgcgct tggcgttgtt cggcacgtcc tgcatccagc
     2881 cgatgctgcg ctgggtcatc gagtcgcgcg ccagcgcgaa acgatccggc ccgccgatcg
     2941 gaaagttatc gatgcccgcg gtcagccgcg ggtcgggcaa ctggtcggcg ctgatgcgca
     3001 actgcaaggc cgcatccacc gacgcctgcc gtgcggcaag catcggcgcg cgctcggtgg
//
LOCUS       DASVHM010000202         2753 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_736018, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000202 DASVHM010000000
VERSION     DASVHM010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_736018"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..385
                     /locus_tag="VF308_04000"
     CDS             <1..385
                     /locus_tag="VF308_04000"
                     /EC_number="2.4.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046917 - triphosphoribosyl-dephospho-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase"
                     /protein_id="HEX7435844.1"
                     /translation="ARGQAQAGFPHVIGLGLPELKRSRDRGDGETSARLNALLAIISE
                     LDDTCVLSRGGRAALTQVQHAAAAVLAAGGAATLAGRRLLRRFAADAVTCNLSPGGAA
                     DLLAATLFLDRIADVSDARPSHQSS"
     gene            395..721
                     /locus_tag="VF308_04005"
     CDS             395..721
                     /locus_tag="VF308_04005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonate decarboxylase subunit delta"
                     /protein_id="HEX7435845.1"
                     /translation="MEKHEFRYIAGAPAAGRAVVGVVGSGDLEVLLEPAPAGLTTVRI
                     TTSVDGYGKVWQAQLDRVFKGASVGPRGPAVALEINDFGATPGVVGMRIAQAFGALGA
                     GAGATS"
     gene            718..1572
                     /locus_tag="VF308_04010"
     CDS             718..1572
                     /locus_tag="VF308_04010"
                     /EC_number="4.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019447184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-independent malonate decarboxylase
                     subunit beta"
                     /protein_id="HEX7435846.1"
                     /translation="MSSSAALLARDSFVELDARGRIRALFDGGRFRELIDPFERVTSP
                     WLLRQGVVTQSDDGVVVAKGEIEGQPAVILAIEGAFQGGSLGEVGGAKIAGALELAVQ
                     DNLRGIPTCAAILFETGGVRLQEANLGLAAIAEIHSAIVDLRRHQPVIGIVAGTVGCF
                     GGMSIAAGLCSYLVVTREARLGLNGPQVIEQEAGIAEYDSRDRPFIWSFTGGEQRART
                     GLVDVFVSDDSQALRDAVIALLARGRPEVERSDAYNHYLDCLSHYDPTLQVTPEIVRD
                     VFERGERA"
     gene            1569..2372
                     /gene="mdcE"
                     /locus_tag="VF308_04015"
     CDS             1569..2372
                     /gene="mdcE"
                     /locus_tag="VF308_04015"
                     /EC_number="4.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-independent malonate decarboxylase
                     subunit gamma"
                     /protein_id="HEX7435847.1"
                     /translation="MNESSSRGATWLAALTENAAPVAGYPASVRVVDAVLADQPCRYI
                     AVLPDKSNPYPRARAGEVGLIEGWALAKALHEAINSDLAMHKRTIVAVVDVSSQAYGR
                     REEAFGIHAALAGAAGAYARARQAGHAVIALIVGKAMSGAFLAHGYQANRIIALNDSG
                     VMVHAMGKAAAARVTMRSVDDLERLAADVPPMAYDIASYATLGLLWRLLDVSSADLPS
                     NADVVSVRRTLTAALDNIRSDPTTDLRSRLGGQNRQASSLVREKLLAQW"
     gene            2380..>2753
                     /locus_tag="VF308_04020"
     CDS             2380..>2753
                     /locus_tag="VF308_04020"
                     /inference="COORDINATES: protein motif:HMM:NF045234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonate decarboxylase holo-ACP synthase"
                     /protein_id="HEX7435848.1"
                     /translation="MCESFPSLASQHRPHDLLWVDDASAVVPVDARPAWATTAWLSVA
                     PVVVRRAPLVRDRVPVGVRGAARNERFAAHVAGDRVISKIAPQDIARHVSSRWPIRDS
                     KLPCLRALARLACELDDSSLNWG"
BASE COUNT          432 a          882 c          949 g          490 t
ORIGIN      
        1 tgcgcgcggc caggcacaag caggctttcc ccacgtcatc ggcctcggct tgcccgagct
       61 caagcgcagt cgagaccgcg gcgacggtga aacgtcggcg cgcctgaatg cgctgctggc
      121 gatcatcagc gagctcgacg acacgtgcgt gctgtcgcgt ggcggccgcg ctgcattgac
      181 gcaagtgcag cacgcggcgg cggcagtgct cgccgccggc ggcgccgcga cacttgcggg
      241 ccggcgtttg ttgcggcgct ttgccgccga cgcggtgaca tgcaatctgt cacctggcgg
      301 agcggccgac ctgctcgcgg ctactctgtt cctggatcgc attgccgacg tttccgacgc
      361 gcgaccgtcg catcaatctt cctgagaggg ctccatggaa aagcatgaat tcagatacat
      421 cgctggtgcg ccggccgctg gccgggccgt cgtcggcgtc gtcggctcgg gcgatctcga
      481 ggtcttgctt gaacccgcgc cggcgggcct caccacggtg cgaatcacca cctccgtcga
      541 tggctacggg aaggtctggc aagcccagct cgaccgggtc ttcaaggggg cgtcggtcgg
      601 gccgcgtggg ccggccgtcg cactcgagat caatgacttc ggtgcgacac caggggtcgt
      661 ggggatgcgc atcgctcaag cgttcggtgc gctcggcgct ggcgcaggag ccacgtcatg
      721 agcagctccg cagcactcct ggcacgcgac agcttcgtcg agctcgacgc gcgtggtcgc
      781 atccgtgcgc tgtttgacgg tggccgattt cgcgaattga tcgatccctt cgaacgcgtg
      841 acatcgccgt ggctactgcg ccaaggtgtt gttacgcaat cggacgatgg tgtggtggtc
      901 gcgaagggcg agatcgaagg acaaccagcg gtgatcctgg cgatcgaagg cgcgtttcaa
      961 ggcggcagcc tcggcgaggt cggcggcgcc aagatcgctg gcgcgctcga gctcgcagtg
     1021 caggacaacc tacgcggcat cccgacgtgc gcggctatcc tgttcgagac cggtggcgtg
     1081 cgcttgcagg aagcgaatct cggactcgcg gcgatcgccg agatccattc ggcgatcgtc
     1141 gatctgcggc gccatcagcc ggtgatcggc atcgtcgccg gtaccgtcgg gtgtttcggc
     1201 ggcatgtcga tcgccgcggg cctgtgcagc tacctcgtcg tgacccgcga agcgcgtttg
     1261 ggcctgaacg gcccgcaggt gatcgagcag gaagccggga tcgccgaata cgattcgcgc
     1321 gatcggccgt tcatctggag ctttaccggg ggcgagcagc gcgctcgcac cggccttgtc
     1381 gatgtctttg tcagtgacga ttcccaggcg ctcagagacg cggtgatcgc cttgctcgcg
     1441 cgcgggcgtc ctgaggtcga gcgcagcgac gcctacaacc actacctcga ttgtctgtcc
     1501 cactacgacc cgacgcttca ggtcacgcct gaaatcgtca gagacgtatt cgaacgagga
     1561 gagcgagcat gaacgaatca tcgagtcgtg gcgccacatg gttggccgcg ttgacggaaa
     1621 acgcggcgcc cgtcgcaggc tacccggcat cggtgcgtgt cgtcgatgca gtgctggcgg
     1681 atcagccttg ccgctacatc gccgtgttgc ctgacaaatc gaacccttac ccgcgtgctc
     1741 gcgcgggcga ggtgggtctg atcgaaggct gggcgttggc caaggccttg cacgaagcga
     1801 tcaattcgga cctcgcgatg cacaagcgca cgatcgtcgc agtggtcgat gtgagcagcc
     1861 aggcctacgg tcgtcgcgaa gaagcgttcg gcattcacgc ggccttggcg ggcgctgcgg
     1921 gtgcctacgc cagggcccgg caggccggcc acgccgtgat cgcactcatc gtcggcaagg
     1981 cgatgtcagg cgcgttcctg gcccacggtt accaggcgaa tcggatcatc gcgctgaacg
     2041 attctggcgt catggttcat gcgatgggca aggctgcggc ggcgcgcgtc accatgcgca
     2101 gcgtcgatga cctggagcgg ctggcggcag acgtcccacc catggcctac gacatcgcca
     2161 gctacgccac gctcggtctt ctgtggaggc ttctcgacgt cagcagcgcg gacctgccga
     2221 gcaacgcgga cgtggtcagt gttcggcgca cgttgacggc ggcgctcgac aacatccgaa
     2281 gcgacccaac gaccgatcta cgcagtcgcc tcggcggtca aaatcggcaa gcttcgtcgc
     2341 tggtgcgcga gaagctgctc gcgcaatggt gagcaggccg tgtgcgagag cttcccctct
     2401 ttggcctccc aacatcggcc gcatgacctg ctgtgggttg acgatgcgtc ggcggtagtt
     2461 ccggtcgacg cgcggcccgc gtgggccacg acggcttggc tctcggtcgc accggtggtg
     2521 gtacggcgtg cgccgctcgt gcgcgatcgg gtgccggtcg gcgtgcgagg tgcggcccgt
     2581 aacgagcggt ttgccgccca cgtcgccggc gatcgagtca ttagcaagat cgcgccgcaa
     2641 gacatcgcac gccacgtttc gagccgctgg ccgattcgcg attccaagct gccgtgcctt
     2701 cgggcgttgg cccggctcgc atgcgagctg gacgactcgt cgctcaactg ggg
//
LOCUS       DASVHM010000203         5934 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_953545, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000203 DASVHM010000000
VERSION     DASVHM010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5934
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_953545"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..716)
                     /locus_tag="VF308_04025"
     CDS             complement(<1..716)
                     /locus_tag="VF308_04025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018913366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HEX7435849.1"
                     /translation="MTATDATAPDRPPRFAAVGAGRMGRGIAIAFAWAGHRIALIDLR
                     PRSAEAWRELHDEARNEIRASLESLAQLGVLRVEQVDTLAARVQIVPADAAPEALGAA
                     ELVFEGVPERMDAKREAFAQLSRYCRADAILTSTTSSILVTQLAGLVRHPERFLNMHW
                     LNPAYVIPVVELSTHAGTSPAVLERAKALMESIGKLPVVCGPSPGYIVPRLQALVMNE
                     AARMVEEGAATAEEIDKATR"
     gene            complement(703..1776)
                     /locus_tag="VF308_04030"
     CDS             complement(703..1776)
                     /locus_tag="VF308_04030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD/NADP octopine/nopaline dehydrogenase family
                     protein"
                     /protein_id="HEX7435850.1"
                     /translation="MKIAILGGGHGCYAAAADLSEAGHAVTLWRRDAVALAPLLSCSS
                     IVLKDAAGVRDVPIAGATADIGTAVRGAELIVIPSPASAQDDIARALAPHLVSGQVVF
                     LPPGTFGSFAMAQTVRAAGNRAQVAWAETGTLPYLARKHGEREVNITVRAMRLPTGVY
                     PARSAARAIEVIRKAYPSVHPCGDALSGALMNAGPVIHPPLMVMNAAPLEHFERWDIH
                     DEGTQPVVRAVTDQLDRERIAVREALGWGAPHYPLADHYANERWMYGDAHKQLVKSGD
                     WREHIDLHTHRYITEDTELGLAFLASAARYAGVEAPIAHGLLAIVGAFLGRDLRQGPR
                     TLEALGLAALPPTALRQRLHDGD"
     gene            1932..2696
                     /locus_tag="VF308_04035"
     CDS             1932..2696
                     /locus_tag="VF308_04035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019575950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7435851.1"
                     /translation="MNDLFSLAGRTALVTGGSRGIGRMIAAGFLAQGARVYISARKAE
                     ACDKTAAELSALGTCVSLPADVSTPEGVKALVEAYAKHESTLDILVNNAGAAWGEAFD
                     TFPEKGWDKVVDLNLKTPFFLTQALIEPLRKAAVTRPAKVINIASIDGISVNPQETYS
                     YAASKAGLIQLTRRMALRLVKDNIVVSAIAPGAFASDMNRDARDHADAVKARIPAGRI
                     GVDDDMAGAAIYLASRAGDYVVGSTLVVDGGVTHAR"
     gene            2726..4435
                     /locus_tag="VF308_04040"
     CDS             2726..4435
                     /locus_tag="VF308_04040"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7435852.1"
                     /translation="MTESRPWSRFYGNVPASLDYPEVTLYEALAATARRVPDAIAWDF
                     FGTQSDYRSLLAQVDRCAAALAGEGLEAGDRFLISMPTSPPGVIAFYAAIRIGALPAL
                     IHPLSTAPEITHFLNTTGARMALTLDAFYGPLAAAAPQEPLDKIILARIPDYLSPLKK
                     LGFWLTKGRKIAKVPVDARVKWWTPLMAAAPRAAAIADANTNDPAAILFSGGTTGLPK
                     GILLSHRNFISEGLGCAAWCAMDEHDAILAILPIFHGFGLGVCVNAAFMAGGKSIFVP
                     QFSAEIVAKLLRSDRPNVLVGVPTLFDALSKDPSLAAADLSCLTACFCGADTLPRVVK
                     ERFEKLVAERGGKVKLLEGYGLTEAVSGIMAMPIGEYREGSIGIPFPDMLAKICAAGT
                     TDDVAVGQEGEICIAGPAVMLGYLDDPQANAETLRVHADGRTWLHTGDLGRMDADGFF
                     YFSVRLKRMIKSSGFNVYPAQVEAAMREHPAVAEVCVIGVPDPAQVERVMAYVVLREP
                     SRAGPQMQDALIAFCRERLIKWSCPREVAFVDALPLTNVGKVDYRSLERRHAKQASMR
                     DST"
     gene            complement(4475..5686)
                     /locus_tag="VF308_04045"
     CDS             complement(4475..5686)
                     /locus_tag="VF308_04045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HEX7435853.1"
                     /translation="MAATALSERYAANLHGVLSCYDRIIVTDTLPGACYAGGMTSFLY
                     AHGIRIFDYPRFAEPLRDRIRQRAQEVCEANGVSVEHVNKSHIRKEDLVAGVLAVRAQ
                     ALADAFSPDVLHQRLKRYALWLCPVAEVFAQTDWHWSIRQAEYSTDLMCRSRDLLVPL
                     YDAISRQAVLAADAPRVASFLGKKITAALAQEIGSRLSTRIEGRCIKHYMGPAGVKVY
                     DKFSRVLRVETTVNDVSFFKHHRRVEHKDAAATRELAPLKKSIYSLIDLREILLGCNQ
                     RYLAFLSSLDDTSAGERDLQRLSQPRVHSNPTVKGLNFFNATDHALLQTLQRGEFNIH
                     GWRRADLIARLDITPASITRQLKRLRLLGLIKKVTHTYRYYLTRLGRAAIAAACSLTR
                     FNIIPAMAVTH"
BASE COUNT          902 a         1998 c         2043 g          991 t
ORIGIN      
        1 tagcgcgtcg ccttgtcgat ctcctcggcc gtggccgcgc cttcctcgac catgcgcgcg
       61 gcttcgttca tcaccagcgc ctgcaggcgc ggcacgatgt agccggggct cggaccgcac
      121 acgaccggga gcttgccgat cgactccatc agcgccttcg cgcgttcgag caccgcgggc
      181 gatgtgccgg cgtgcgtgct cagctcgacg accgggatca cgtaggccgg gttgagccag
      241 tgcatgttga ggaagcgctc gggatggcgc accagcccgg ccagttgcgt gacgaggatg
      301 ctgctcgtcg tcgaggtcag gatcgcatcg gcacggcagt agcggctcaa ctgcgcgaac
      361 gcctcgcgct tcgcgtccat gcgttcgggc acgccttcga acaccagctc ggccgcgccg
      421 agggcctcgg gtgccgcgtc ggccggcacg atttgcacgc gcgcggcgag ggtgtcgacc
      481 tgctcgacgc gcagcacgcc gagttgcgcc aggctttcca ggctcgcccg gatctcgttg
      541 cgagcctcgt cgtgcaactc gcgccaggct tcggcgctgc gcggtcgcag gtcgatcagc
      601 gcgatgcggt ggccggccca ggcgaacgcg atcgcgatgc cgcgccccat gcgtccggcg
      661 cccacggcgg cgaagcgcgg cgggcggtcc ggcgccgtcg cgtcagtcgc cgtcatgcag
      721 gcgctgccgc aacgcggtgg ggggcagcgc ggcgaggccg agcgcttcga gggtgcgcgg
      781 accctggcgc aggtcgcggc cgaggaaggc gccgacgatg gcgagcaagc cgtgcgcgat
      841 cggcgcctcg acgccggcat agcgcgccgc cgacgcgagg aaggcgaggc cgagctcggt
      901 gtcttcggtg atgtagcggt gcgtgtgcag gtcgatgtgt tcgcgccagt cgcccgattt
      961 cacgagctgc ttgtgcgcgt cgccgtacat ccagcgctcg ttggcgtagt ggtcggcgag
     1021 cgggtagtgc ggtgcgcccc agccgagcgc ctcgcgcacc gcgatgcgct cgcggtcgag
     1081 ttggtcggtg acggcgcgca caaccggctg cgtgccttcg tcgtggatgt cccagcgttc
     1141 gaaatgctcg agcggcgcgg cgttcatcac catcagcggc gggtggatca ccggaccggc
     1201 gttcatcagc gcgcccgaga gcgcgtcgcc gcacgggtgc acgctcgggt aggccttgcg
     1261 gatcacctcg atcgcgcgcg ccgcgctgcg cgccgggtag acgccggtcg gcaggcgcat
     1321 cgcccgcacc gtgatgttga cctcacgctc gccgtgcttc ctggcgaggt acggcagcgt
     1381 gccggtttcg gcccaggcga cttgcgccct gttgcccgcc gcgcgcacgg tctgcgccat
     1441 cgcgaagctt ccgaaggtgc cgggcggcag gaacacgacc tggccgctga cgagatgtgg
     1501 cgccagcgca cgcgcgatgt cgtcctgcgc actcgccggc gacgggatca cgatcagctc
     1561 ggcaccccgg accgccgtgc cgatgtcggc cgtggcgccc gcgatcggca cgtcgcggac
     1621 gccggcggcg tctttcagga cgatgctgct gcaggacagg agcggcgcga gagcgaccgc
     1681 gtcgcggcgc cacagcgtga ccgcgtggcc ggcttcggaa agatcggcgg ctgcggcgta
     1741 gcagccgtgc ccaccaccga ggatggctat tttcatcggc atacattaat tttcacttgt
     1801 ttagttgtca accttttttg gcgaggcagc gctcgttgcg atcccgctgc cgcagcccgc
     1861 gtcgtcggcc gacagcgatg cgcgcaaaat gacctcggct ccgaagctca cttcatccag
     1921 cgaggtttcc gatgaacgat ctcttctcac tcgcgggccg cactgccctg gtcaccggcg
     1981 gttcgcgcgg catcggccgc atgatcgcgg ccggcttcct cgcgcagggt gcgcgggtct
     2041 acatctcggc tcgcaaggcc gaggcctgcg acaagaccgc ggccgaactg tcggcgctcg
     2101 gcacctgtgt ctcgctgccg gccgacgtat ccacacccga aggcgtgaag gcgctggtcg
     2161 aagcctatgc gaagcacgaa tcgacgctcg acatcctcgt caacaacgcc ggcgcggcct
     2221 ggggcgaagc gttcgacacg tttcccgaga aaggctggga caaggtcgtc gacctgaacc
     2281 tgaagacgcc gttcttcctc acgcaggcgc tgatcgagcc gctgcgcaag gccgccgtga
     2341 cgcggccggc caaggtgatc aacatcgcgt cgatcgacgg catctcggtc aatccgcagg
     2401 agacgtattc gtatgcggcg agcaaggccg ggctgatcca gctgacgcgg cgcatggcgc
     2461 tgcgcctcgt caaggacaac atcgtcgtca gcgcgatcgc gcccggcgca ttcgcctccg
     2521 acatgaaccg cgacgcgcgc gaccacgccg acgcggtcaa ggcgcgcatc cccgccggcc
     2581 gcatcggcgt cgacgacgac atggccggcg ccgcgatcta cctcgcgtcg cgtgccggcg
     2641 actacgtggt cggatcgacg ctcgtcgtcg atggcggcgt gacgcacgcg cgctgagtca
     2701 cgcccgtccc ggcaggaggc cttgaatgac cgaatcgcgc ccctggagtc gcttctacgg
     2761 caacgtgccg gcttcgctcg actatccgga ggtcacgctc tacgaggcgc tggccgcgac
     2821 cgctcggcgc gtgccggacg cgatcgcctg ggacttcttc ggcacgcagt ccgattaccg
     2881 ctcgctgctc gcgcaagtcg atcgttgcgc tgcggcgctg gccggcgagg ggctcgaggc
     2941 cggtgaccgc ttcctgatct cgatgccgac ctcgccgccg ggcgtgatcg cgttctacgc
     3001 cgcgatccgc atcggcgcgc tcccggcgct gatccacccg ctctcgaccg cgcccgagat
     3061 cactcacttc ctcaacacga ccggcgcgcg catggcactc accctcgatg ccttctacgg
     3121 gccgctcgcg gcggctgcgc cgcaagagcc gctcgacaag atcatcctcg cgcgaattcc
     3181 ggactacctt tcaccgctga agaagctcgg cttctggctg acgaagggcc gcaagatcgc
     3241 gaaggtgccg gtggatgccc gggtgaagtg gtggacgcct ctcatggcag ccgcgccgcg
     3301 cgcagcggcg attgccgacg cgaacaccaa cgaccccgca gcgatcctgt tctccggagg
     3361 cacgaccggt ctgcccaagg gcattcttct gtcgcaccgc aacttcatct ccgaaggcct
     3421 gggctgcgcg gcgtggtgcg cgatggacga gcacgacgcg atcctggcca tcctgccgat
     3481 cttccacggc ttcggcctcg gcgtgtgcgt gaatgccgcc ttcatggccg gcggcaagtc
     3541 gatcttcgtg ccgcagttca gcgccgagat cgtggccaaa ctcctgcgca gcgaccggcc
     3601 gaacgtgctg gtgggcgtgc cgacgctctt cgatgcgctg agcaaggacc cctcgctcgc
     3661 cgccgccgat ctgtcgtgcc tcacggcctg cttctgcggt gcggacacgc tgccgcgcgt
     3721 ggtcaaagag cgcttcgaga aactggtggc cgagcgcggt ggcaaggtca agcttctcga
     3781 aggctacgga ctcaccgagg cggtcagcgg catcatggcc atgccgatcg gcgaataccg
     3841 cgaaggctcg atcggcattc cgtttccgga catgctggcg aagatctgcg ctgctggcac
     3901 gaccgacgac gtggcggtgg gtcaggaagg cgagatctgc atcgccggcc cggcggtgat
     3961 gctgggctac ctcgacgatc cgcaggccaa cgccgagacg ctgcgcgtgc acgccgacgg
     4021 ccgcacctgg ctgcataccg gcgacctggg ccgcatggac gccgacggct tcttctattt
     4081 ctcggtgcgc ctgaagcgca tgatcaagtc gtccggattc aacgtctatc cggctcaggt
     4141 cgaagcggcc atgcgcgagc atccggcggt ggcggaggtg tgcgtgatcg gcgtcccgga
     4201 tcccgcgcag gtcgagcgcg tgatggccta cgtcgtgctg cgcgagccgt cgcgcgcggg
     4261 gccgcagatg caggatgcgt tgatcgcgtt ttgccgtgaa cgcctgatca agtggtcgtg
     4321 cccgcgcgaa gtggcgttcg tcgatgcgct gccgctgacc aacgtgggca aggtcgacta
     4381 ccgctcgctg gaacgacggc atgcgaagca agcctcgatg cgggacagca cttagtctct
     4441 agacagttca gttttgacag atcgtgcgaa gacttcaatg ggtaacagcc atggcgggaa
     4501 tgatgttgaa gcgcgtgagc gagcaagcgg cggcgatggc ggcgcggccc aggcgcgtca
     4561 agtaataacg gtaggtatgc gtgaccttct tgatcagacc aagcaggcgc agccgtttga
     4621 gctggcgcgt gatggacgca ggcgtaatgt cgagccgggc aatgaggtcg gctcgacgcc
     4681 agccgtggat gttgaactcg cctcgctgca gggtttgcag cagcgcatgg tcggtggcgt
     4741 tgaagaagtt cagccccttg accgtcggat tgctgtgcac acgcggctgg ctcagccgct
     4801 gcaggtcacg ctcgcctgcg cttgtgtcgt ccaggctgga caggaacgcc agatagcgct
     4861 ggttgcagcc cagcaggatt tcgcgcagat cgatcaggct gtagatcgac ttcttcagcg
     4921 gcgccagctc gcgcgtggcc gccgcgtcct tgtgttccac cctgcggtgg tgcttgaaaa
     4981 agctcacgtc gttgacggtg gtctccacgc gcagcacgcg cgagaacttg tcgtagacct
     5041 tcacgcccgc cgggcccatg tagtgcttga tgcagcggcc ctcgatgcgg gtggacagcc
     5101 gcgagccgat ctcctgggcc aacgcagcgg tgatcttctt gcccaggaag ctcgccacgc
     5161 gcggcgcatc ggcggccagc accgcctggc gcgaaatcgc gtcatacagc ggcaccagga
     5221 ggtcgcggct gcgacacatc aggtcggtgg agtactcggc ctggcgaatg ctccagtgcc
     5281 agtcggtctg agcgaacacc tcggccaccg ggcacagcca cagcgcgtag cgcttgaggc
     5341 gctggtgcag cacatcgggg ctgaaggcgt cggccagggc ctgcgcgcgc acggccagca
     5401 cccccgcgac gaggtcttcc ttgcggatgt ggctcttgtt gacgtgctcg acgctcacgc
     5461 cgttggcttc gcaaacctcc tgtgcgcgct gccggatgcg gtcccgcagc ggctcggcaa
     5521 agcgcggata gtcgaagatg cggatgccgt gcgcatacag aaaactcgtc atgccgcccg
     5581 cgtaacacgc ccccggcagc gtgtccgtga cgatgatgcg gtcgtagcac gacagcacac
     5641 cgtgcaggtt cgccgcatac cgctcactca gtgccgtcgc agccatggtc gctcacctcg
     5701 ccaatggttc gccgcaaatc gtattacctg tttggctccg gctctgccgg cttaggatga
     5761 aactctttca gatgactctc gcgtgttgca ctcaggcgcg cggagatgct ggcgggagga
     5821 ggcccaggcg cgcagaggct caggcgcgca gaggcgcggg cgcgcggccg gctgcgcttt
     5881 actgcggcgg tcgccgctgc gcggcgactg ccctgcgctg ctcgctccgc gggg
//
LOCUS       DASVHM010000204         2559 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_446968, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000204 DASVHM010000000
VERSION     DASVHM010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446968"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..215)
                     /locus_tag="VF308_04050"
                     /pseudo
     CDS             complement(1..215)
                     /locus_tag="VF308_04050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856036.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-E domain-containing protein"
     gene            complement(229..1674)
                     /locus_tag="VF308_04055"
     CDS             complement(229..1674)
                     /locus_tag="VF308_04055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HEX7435854.1"
                     /translation="MKVGFDEMRGADGAVREHYGGYDRWLAEQPPQVMRSRRDEAEVI
                     FRRVGITFAVYGSKDDGAGPNGGTERLIPFDLIPRVIPAHEWRELERGLRQRVTALNR
                     FLHDVYHDQEILKAGIVPADQVLGNAQYRAEMKGVEVAGGIYSHIAGIDIVRAANADG
                     SGSYYVLEDNLRVPSGVSYMLENRKMMMRLFPELFSRHRIAPVAHYPDLLLETLRSVA
                     PAAVNDPTVVVLTPGMYNSAYFEHAFLAQQMGIELVEGQDLFVDDNFVYMRTTQGPKR
                     VDVIYRRVDDDFLDPLAFRADSTLGCEGLLGAYRAGNVTLSNAIGTGVADDKSIYPFV
                     PKMIEFYLGERPILQNVPTYVCRDPHDLGYVLDHLGELVVKEVHGAGGYGMLVGPAAT
                     AAEIEDFRVGLKADPNRYIAQPTLALSTCPTFVESGIAPRHIDLRPFVLSGKTVQMVP
                     GGLTRVALKEGSLVVNSSQGGGTKDTWILEA"
     gene            complement(1882..>2559)
                     /locus_tag="VF308_04060"
     CDS             complement(1882..>2559)
                     /locus_tag="VF308_04060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX7435855.1"
                     /translation="PEGVVVPVDPIVAINAGNYLKVPVLAGNARDEAKLFPTFLALAP
                     AFGGISGRLVSDATLFSTQFSYNPDAAPTVAIGSWIPAQYLPVNTPVTGFNAKTDLFN
                     SVFFIPSRDNVLNALKAKQPQVWYYRFDWDQEPAPWNDIYGAAHAFDLPFVFGNFGPS
                     LFSNVVNSTANKPGRLDLSDAMMKSIGAFAKNGDPNNAALGVAWPAWPAKLIFNATPA
                     VKSISVQ"
BASE COUNT          400 a          806 c          929 g          424 t
ORIGIN      
        1 atgacgctgc gcggcgtcac cgcgccgtgg cgctcggcga agtcgtcggt gagctcgctg
       61 atgctgagca ggccgcgcta gccacgctcg gcggcttcgt cggactgcgg cagcagcgac
      121 atctggtagt tgacgtcgag catgcgcgca gtgttctcgg cgcgctccat gtagcgggcc
      181 atccagaaca ggtgatcggc ggtgcgcgac agcatgagat ggttccggtc aggcctcgag
      241 gatccaggtg tccttggtgc cgccgccctg cgacgaattc accaccagcg agccttcctt
      301 caaggcgacg cgggtgagcc cgccgggcac catctgcacc gtcttgcccg agagaacgaa
      361 cgggcgcagg tcgatgtggc gcggcgcgat gccgctctcg acgaaggtcg ggcaggtcga
      421 cagcgccagc gtcggttggg cgatgtagcg gttcggatca gccttcaagc cgacccggaa
      481 atcctcgatc tcggccgctg tcgccgctgg gccgacgagc atgccgtagc cgccggcgcc
      541 gtggacttcc ttgacgacga gctcgccgag atggtcgagc acgtagccga ggtcgtgcgg
      601 gtcgcggcag acgtaggtcg gcacgttctg caggatcggc cgctcgccga ggtagaactc
      661 gatcatcttc gggacgaacg gatagatcga cttgtcgtcg gcgacgccgg tgccgatcgc
      721 gttcgagagc gtcacgttgc cggcgcggta ggcgccgagc agcccctcgc agccgagcgt
      781 cgagtcggcg cggaaggcga gcgggtcgag gaagtcgtcg tcgacgcggc ggtagatgac
      841 gtcgacgcgc ttgggcccct gcgtcgtccg catgtagacg aagttgtcgt cgacgaagag
      901 gtcctgccct tcgaccagct cgatgcccat ctgctgggcc aggaaggcgt gctcgaagta
      961 ggcgctgttg tacatgcccg gcgtgaggac gacgacggtc gggtcgttca ccgccgccgg
     1021 cgcgaccgag cgcagcgtct cgagcagcag gtcgggatag tgcgcgaccg gcgcgatgcg
     1081 gtggcgactg aacagctcgg ggaagagccg catcatcatc ttgcggttct cgagcatgta
     1141 cgagacgccg ctcggcacgc gcaggttgtc ctcgaggacg tagtagctgc cgctgccgtc
     1201 ggcgttggcg gcgcggacga tgtcgatccc ggcgatgtgt gaatagattc cgccggcgac
     1261 ctcgacgccc ttcatctcgg cgcggtactg ggcgttgccg aggacctggt cggcggggac
     1321 gattcccgcc ttcagaatct cctggtcgtg atagacgtcg tggaggaagc ggttgagcgc
     1381 ggtgacgcgc tggcgcaggc cgcgctccag ctcgcgccat tcgtgcgccg ggatcacgcg
     1441 cgggatgagg tcgaacggga tcagccgctc ggtgccgccg ttcgggccgg cgccgtcgtc
     1501 cttcgagccg tagacggcga aggtgatgcc gacgcgacgg aagatgacct cggcctcatc
     1561 gcgccgcgac cgcatcactt gcggcggctg ctccgccagc cagcggtcgt agccgccgta
     1621 gtgctcgcgt accgcgccgt ccgcgccccg catctcgtcg aaaccgactt tcatgctgcc
     1681 tccggagccg agggtagcaa agtccgcgcc atggacgagc gaggcgcccg ctttcagtgc
     1741 ggctcgggct ggatccgacg ttcgagcggc cgcggggcgg catgcgcagc gacgcgcgct
     1801 gacccccggt gaagagcagc cccggtgcga cccgctcggg acgaccgcgg gctcttcttg
     1861 gcgatcagct caggcgatgg cctactggac cgaaatgctc ttcacagcgg gcgtcgcgtt
     1921 gaagatcagc ttggccggcc aggccggcca ggcgacgccg agcgcggcgt tgttgggatc
     1981 accgttcttg gcgaacgcgc cgatgctctt catcatcgcg tccgaaaggt ccaaccgccc
     2041 cggcttgttg gcggtgctgt tgacgacatt cgagaacagc gacgggccga agttgccgaa
     2101 cacgaacggc aggtcgaagg catgcgcggc gccgtagatg tcgttccacg gggccggttc
     2161 ctgatcccag tcgaagcggt agtaccagac ctgcggctgc ttggccttga gcgcattgag
     2221 gacgttgtcg cggctcggaa tgaagaagac cgagttgaac aggtcggtct tggcgttgaa
     2281 gcccgtcacc ggcgtgttca ccggcagata ctgcgccggg atccagctgc cgatggcgac
     2341 cgtcggcgcg gcgtcggggt tgtagctgaa ctgggtcgag aacagcgtcg cgtcgctgac
     2401 caggcggccg ctgatgccgc cgaacgcggg cgctagcgcg aggaaggtcg ggaacagctt
     2461 ggcctcgtcg cgcgcgttgc cggcgagcac cggcaccttg aggtagttgc ccgcgttgat
     2521 ggcgacgatc ggatcgacgg ggacgacgac gccctcggg
//
LOCUS       DASVHM010000205         2145 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1096913, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000205 DASVHM010000000
VERSION     DASVHM010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1096913"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2145)
                     /locus_tag="VF308_04065"
     CDS             complement(<1..>2145)
                     /locus_tag="VF308_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HEX7435856.1"
                     /translation="LAAADATAQRPPAGPAIPASGVPPGSPQPGSAPAPSVQPFAAVI
                     KDAKKIDGLFTLYQREEKVWIELRPEDFGRPFFLSPKIATGIGEARLFGGTMDKPQVI
                     EFRRIHNQVQMIARNERFIAKPGTPEARAVAAAFSPSLLASAAVASQPQPERKSVLVE
                     VNALFLNDMLGLGMDLQRAFRQGYGFDARNSAITSVRGKPDMVALEVLAHYATGSISV
                     PQPGMPPGAPVPTTPQSIPDPRSMFMTLHYSIASLPAEPMAARVSDPRIGFFTARQQD
                     FGDDLKRTPTVRHVQRWRLEKKDPAAALSEPVKPIVYWLDRTIPLKYRGAITAGILEW
                     NKAFEQIGFKNAIEAKVQPDDADFDTLDFGLASVRWMTNSVPAFGATGPSHVDPRSGE
                     ILDADIAIESLSSRARRSLRAQVLTNGIDWNKVMQAPADLGHERLDPRLCEYADGAAD
                     QMAYALDVLAARGDLDPSGPEAEQFVLDYLTSVTAHEVGHTLGLRHNFRASRIHSDAE
                     LSDPEFTRTHSMTGSVMEYSPVNLARPGDPMVQPFQLTLGPYDYWAIEYAYRPFDPAS
                     EPAELRKIAARSGEAELAYGTDEDNFLGIDPDALHFDLGNDVAAFARKRIAIARDLFK
                     RQETRTFTPGQDYTVLRRSLAFAVGDAANAVGVLGRQIGGLRTLRDFPGSGRDPLQPV
                     AAAAQREALDVIARGLFAADSFVVSPALQRRLA"
BASE COUNT          331 a          678 c          789 g          347 t
ORIGIN      
        1 cgcgaggcgc cgctgaagcg ccggtgagac gacgaagctg tcggcggcga acaggccgcg
       61 cgcaatcacg tcgagcgctt cgcgctgcgc cgccgccgcg accggttgca ggggatcgcg
      121 gccgctgccg gggaagtcgc gcagggtgcg caggccgccg atctggcgcc cgagcacgcc
      181 gaccgcgttg gccgcgtcgc cgaccgcaaa cgcgagcgaa cggcgcagca ccgtgtagtc
      241 ctgacccggc gtgaaggtgc gtgtctcctg acgcttgaac aggtcgcgcg cgatcgcgat
      301 gcgtttcctg gcaaaggccg cgacgtcgtt gccgaggtcg aaatggagcg cgtcggggtc
      361 gatgccgaga aaattgtcct cgtcggtgcc ataggcgagt tcggcctcgc cgctgcgcgc
      421 ggcgatcttc ctcaattcgg ccggctcgct cgcgggatcg aacggcctgt aggcgtattc
      481 gatcgcccaa tagtcgtagg gtccgagcgt caactggaag ggctgcacca tcgggtcgcc
      541 ggggcgtgcc aggttgaccg gcgaatactc catcaccgaa ccggtcatcg aatgggtgcg
      601 tgtgaattcc gggtccgaga gctcggcgtc gctgtggatg cgcgaggcgc gaaagttatg
      661 gcgcaagccg agcgtgtggc cgacctcgtg tgcggtcacg gaagtcaggt agtcgagcac
      721 gaactgctca gcctcgggcc cggacggatc gaggtcgccg cgggcggcga gcacgtcgag
      781 ggcataggcc atctggtcgg cggcaccgtc ggcgtactcg cacaggcgcg ggtcgaggcg
      841 ctcatgcccg aggtccgcgg gagcctgcat caccttgttc cagtcgatgc cattggtgag
      901 gacctgcgcg cgcagcgagc gccgcgcccg cgacgacagg ctttcgattg caatgtccgc
      961 gtcgagaatc tcgccgctgc gcggatcgac gtggctcggc ccggtggcac cgaaggccgg
     1021 cacgctgttg gtcatccagc gcaccgacgc gaggccgaaa tcgagggtgt cgaaatcggc
     1081 gtcgtcgggc tggaccttgg cctcgatcgc gttcttgaag ccgatctgct cgaacgcctt
     1141 gttccattcg aggatgccgg ccgtgatggc accacggtac ttgagcggga tggtgcggtc
     1201 gagccaatag acgatcggct tgaccggttc ggaaagcgcc gccgccgggt ccttcttctc
     1261 gaggcgccag cgctgcacgt ggcgcaccgt cggcgtgcgc ttcaaatcgt cgccgaagtc
     1321 ctgctggcgc gccgtgaaaa agccgatgcg cgggtcggac acgcgcgcgg ccatcggttc
     1381 ggccggcagg ctcgcgatcg aataatgcag cgtcatgaac atgctgcgcg gatcgggaat
     1441 cgactgcggc gtggtcggca ccggcgcgcc gggcggcatg ccgggctgcg gcaccgaaat
     1501 cgatccggtc gcgtagtgcg caaggacttc gagcgccacc atgtccggct tgccgcgcac
     1561 cgaagtaatc gccgagttgc gggcgtcgaa accgtagccc tggcggaacg cgcgttgcag
     1621 atccatgccg aggccgagca tgtcgttgag gaagagcgcg ttcacttcga cgagcaccga
     1681 cttgcgctcg ggctgcggct ggctcgcgac ggccgcgctg gcgagcaggc tcggcgagaa
     1741 ggcggcggcg acggcgcgcg cctccggcgt gccgggcttg gcgatgaagc gctcgttgcg
     1801 ggcgatcatc tgcacctggt tgtggatgcg ccggaattcg atgacctgcg gcttgtccat
     1861 agtgccgccg aaaagcctgg cctcaccgat gccggtcgcg atcttgggcg acaggaagaa
     1921 tggcctgccg aagtcttcag gacgcagctc gatccagacc ttttcttcgc gctggtagag
     1981 cgtgaagagg ccgtcgatct tcttcgcatc cttgatcacc gcggcgaacg gctgcacgct
     2041 cggggccggt gcgctgccgg gctgcgggct gcccggcggc acgccggaag ccgggatcgc
     2101 cgggccggcg ggtgggcgct gcgcggtcgc atcggcggcg gcgag
//
LOCUS       DASVHM010000206         2516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1240883, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000206 DASVHM010000000
VERSION     DASVHM010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1240883"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1081)
                     /locus_tag="VF308_04070"
     CDS             complement(<1..1081)
                     /locus_tag="VF308_04070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008907044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7435857.1"
                     /translation="MNQKPLRISRRTALGAGLALSLGGGNAFAQAAKYGPGASATEIK
                     LGQTMPYSGPASAYGTIGKLHQAYFKMINEAGGINGRKINLISLDDGYSPPKAVEQVR
                     RLVEQDEVLALFQTLGTPSNSAIHKYVNGKKVPHLLLATGATKWGDPKNYPWTMGFNP
                     SYAAEGAIYARYLLKTKPNAKIGILYQNDDYGKDLLKGVEDTLSGPNAKMIVSKVSYE
                     VTDPTVDSQILTLQGSGADTFINITTPKFAAQAVRKAWDSGWKPLHIVNNVGASVGSV
                     LVPAGLDKSVGLLTMQYYKDPNDPQWKDDPAMLEWRGFMGRYYKEGDPKDASNLYAYI
                     AAQTMVQILKQCGNDLTRENVMRQAA"
     gene            complement(1125..2093)
                     /locus_tag="VF308_04075"
     CDS             complement(1125..2093)
                     /locus_tag="VF308_04075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008907045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435858.1"
                     /translation="MSLPVERRKLVALAILLALACALPFFVANYRVFQMTLVLAYSIA
                     LLGLNMLTGYNGQISLGHGAFYAIGAYTAAVLMDKLGVPYWATIPVAGAVCFVAGFLF
                     GLPALRLEGLYLALATFALGVAMPQILKHKSLEHWTGGSQGIVIVKPDPPAWSGVSQD
                     QWLYFFTLAWVVVLFILGWNLLRGRIGRAMVAIRDQPIAAQAMGVNTAMVKSLTFGVS
                     ALYTGIAGALGAIAIQFVAPDSFTIFLSITLLTGVVIGGLASISGAFYGALFIQFIPN
                     IADEISKAAPWAIYGIVLIAFMYAMPTGVAGFVRMIRARLMRRRAA"
     gene            complement(2090..>2516)
                     /locus_tag="VF308_04080"
     CDS             complement(2090..>2516)
                     /locus_tag="VF308_04080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012206619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435859.1"
                     /translation="VLLLLFVFFRFTPLGLAMRAAAQNPVSSRLVGIRVGWMLALGWG
                     LAAAIGAIAGMVVAPTVFLEPNMMGGVLLYAFAGALLGGIDSPGGAVLGGFIVGVLEN
                     VVGAYVGTELKLTVALIVIVAVLVVRPSGMFGKVHVVRV"
BASE COUNT          442 a          801 c          878 g          395 t
ORIGIN      
        1 tggcggcctg gcgcattacg ttctcgcgcg tcaggtcgtt gccgcactgc ttcaggatct
       61 gcaccatggt ctgcgctgcg atgtacgcgt agaggttgct cgcgtccttc gggtcaccct
      121 ccttgtaata gcgccccatg aagccgcgcc actcgagcat cgccgggtcg tccttccact
      181 gcggatcgtt cggatccttg tagtactgca tcgtcaggag gccgaccgac ttgtcgaggc
      241 cggccggaac cagcaccgag ccgaccgagg cgccgacgtt gttgacgatg tgcagcggct
      301 tccagcccga atcccacgcc ttgcggaccg cctgcgccgc aaacttcggc gtcgtgatgt
      361 tgatgaaggt gtcggcaccc gagccctgca gcgtcaggat ctgcgagtcg acggtcgggt
      421 cggtcacctc gtagctgacc ttcgagacga tcatcttggc attcggcccg gagagcgtgt
      481 cctcgacgcc cttgagcaga tccttgccgt agtcgtcgtt ctggtagagg atcccgatct
      541 tggcgttcgg cttggtcttc agcaggtagc gggcatagat cgcgccctcg gcggcgtagc
      601 tcgggttgaa gcccatcgtc cacggatagt tcttgggatc gccccatttg gtcgcgccgg
      661 tcgcgagcag caggtgcggt accttcttgc cgttgacgta cttgtggatc gccgaattgc
      721 tcggcgtgcc gagggtctgg aacaaggcga ggacctcgtc ctgctcgacc aggcggcgca
      781 cctgctcgac cgccttgggc gggctgtagc cgtcgtcgag gctgatcagg ttgatcttgc
      841 ggccgttgat tccgcccgcc tcgttgatca tcttgaagta ggcctggtgc agcttgccga
      901 tcgtgccata ggccgacgcc gggccgctgt acggcatggt ctgaccgagc ttgatctcgg
      961 tcgccgaggc gcccgggccg tacttggcgg cctgcgcgaa cgcgttgccg ccgcccaggg
     1021 acagtgccag gccggcgccg agggcggtgc ggcgggagat gcgaaggggt ttctggttca
     1081 tgtctcgctc catcgaagaa cgtggtgtgg gatcaacgcg gaaatcaggc agcgcgccga
     1141 cgcatcagcc gggcgcggat catgcggaca aacccggcca cgccggtcgg catggcgtac
     1201 atgaaggcga tcaggacgat cccgtagatc gcccacggcg ccgccttcga gatctcgtcg
     1261 gcgatgttgg gaatgaactg gatgaacaag gcgccgtaga acgcgccgga gatcgacgcc
     1321 aggccgccga tgacgacgcc ggtcagcagc gtgatcgaca ggaagatggt gaacgaatcc
     1381 ggcgccacga actggatcgc gatcgcgccg agcgcgccgg cgatcccggt gtacagcgcg
     1441 gagacgccga aggtcagcga cttcaccatc gcagtattga cgcccatcgc ctgcgccgca
     1501 atgggctgat cccggatcgc gaccatggcc cggccgatcc tgccgcgcag caggttccag
     1561 ccgaggatga acagcacgac gacccaggcg agggtgaaga agtacagcca ctggtcctgg
     1621 gagacgccgc tccaggccgg cggatcgggc ttgacgatga cgatgccttg cgacccgccg
     1681 gtccagtgct cgaggctctt gtgcttcagg atctgcggca tggcgacgcc gagcgcgaag
     1741 gtcgcgagcg cgaggtagag gccttcgagg cgaagcgccg gcaggccgaa caggaacccg
     1801 gcgacgaagc acaccgcgcc ggcgaccggg atcgtcgccc agtacggcac gccgagcttg
     1861 tccatcagga cggcagcggt gtaggcgccg atcgcgtaga acgcaccgtg gccgagcgag
     1921 atctggccgt tgtagccggt cagcatgttg aggccgagca gcgcgatcga gtaggcgagg
     1981 acgagcgtca tctggaagac gcggtagttg gcgacgaaga acggcagcgc gcaggcgagc
     2041 gccagcagga tcgccagcgc gacgagcttg cggcgctcga cgggcaggct catacgcgca
     2101 ccacgtgaac cttgccgaac atccccgacg ggcggacgac gagcacggcg acgatgacga
     2161 tcagcgcgac cgtgagcttg agctcggtgc cgacgtaggc gccgacgacg ttctcgagca
     2221 cgccgacgat gaagccgccg aggaccgcgc cgccgggact gtcgatgccg ccgagcaggg
     2281 cgcccgcgaa ggcgtagagc aggacgccgc ccatcatgtt cggctcgaga aagaccgtcg
     2341 gcgcgaccac catcccggcg atcgcgccga tcgctgccgc caggccccag ccgagggcga
     2401 gcatccagcc gacgcggatg ccgacgagcc ggctcgagac cgggttctgc gccgcggcgc
     2461 gcatcgccag gccgaggggc gtgaagcgga agaagacgaa cagcagcagc aggacg
//
LOCUS       DASVHM010000207         1678 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1024632, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000207 DASVHM010000000
VERSION     DASVHM010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1024632"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..447
                     /locus_tag="VF308_04085"
     CDS             <1..447
                     /locus_tag="VF308_04085"
                     /inference="COORDINATES: protein motif:HMM:NF012928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7435860.1"
                     /translation="RTLVERRSADVAPALLLDLARDFGTTPVVGATGPAEALAQLAAA
                     LKPASVEVIALDDVAGLVVMRTIACLVNEAADLMTWTGTGAAAIDTAMRLGMAYPRGP
                     LAWADAIGASRVATVLSHLQAHYGEVRYRRSPRLSRAHFAKELFHG"
     gene            440..916
                     /gene="paaI"
                     /locus_tag="VF308_04090"
     CDS             440..916
                     /gene="paaI"
                     /locus_tag="VF308_04090"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyphenylacetyl-CoA thioesterase PaaI"
                     /protein_id="HEX7435861.1"
                     /translation="MADALTAQQTADAVGAYMFSRDRASKGLGMRLVAMSEGAAFLEM
                     TVREDMLNGMDICHGGFITTLADSAFAYACNSTGDLTVAAGLVVDFLAPARLGDLLTA
                     RAFEVVQAGRAGLYDITVTNQRGEQVALVRGRAHRMKGQRVMPNEEPRGASSGKAL"
     gene            913..>1678
                     /locus_tag="VF308_04095"
     CDS             913..>1678
                     /locus_tag="VF308_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7435862.1"
                     /translation="MTAQHAAAGQLEPIERASQDELRALQLQRLQWSLHHAYANVAHY
                     RQAFDRQGVHPGDLKSLADLARFPFTFKSDFRDNYPFGLLAVPRDKVARLHASSGTTG
                     KPTVVGYTAKDIDIWADLVARSIRAAGGRPGDIVHVAYGYGLFTGGLGAHYGAERLGC
                     TVIPMSGGQTEKQVQLILDLKPDIIMVTPSYMQVLIEEFVRLGLDPRQSSLRIGIFGA
                     EPWTEAMRREIETNAGIDAVDIYGLSEVMGPGVASEC"
BASE COUNT          248 a          602 c          564 g          264 t
ORIGIN      
        1 cgcacgctcg tcgagcgccg ctcggccgat gttgcgcccg cgctgctcct cgacctggcg
       61 cgcgatttcg gcacgacccc ggtcgtcggt gcaaccggcc cggccgaggc gctcgcgcag
      121 ctcgccgcgg cgttgaagcc ggcttctgtc gaggtgatcg ccctcgacga cgtcgccggc
      181 ctggtcgtga tgcgcaccat cgcctgcctc gtcaacgagg ccgccgacct gatgacctgg
      241 accggcaccg gcgcggccgc catcgacact gcgatgcgcc tcggcatggc ctatccccga
      301 gggccgctcg cctgggccga tgcgatcgga gcctcgcgcg tggccaccgt gctctcccat
      361 ttgcaggcgc actacggcga ggtgcgctat cggcgttcgc cgcgtctttc ccgcgcccat
      421 ttcgcaaagg agcttttcca tggctgacgc gctcacggcg cagcagaccg cggatgcggt
      481 cggcgcctac atgttctcga gggaccgggc ctcgaaggga ttgggcatgc gcctcgtcgc
      541 catgtccgaa ggcgcggcat ttctcgagat gacggtgcgc gaggacatgc tcaacggcat
      601 ggacatctgt cacggcggct tcatcacgac gctcgccgac tcggcgttcg cgtacgcctg
      661 caactccacg ggcgacctca ccgtcgccgc cgggctcgtg gtcgatttcc tcgcgccggc
      721 gcggctcggc gacctgctga cagcgcgcgc tttcgaagtg gtgcaggcgg gccgggccgg
      781 cctctacgac atcaccgtga cgaaccagcg cggcgagcag gtcgcgctcg tccgcggccg
      841 cgcccaccgg atgaaggggc agcgcgtgat gccgaacgag gaaccgcgcg gcgcgtcgag
      901 cgggaaagcg ctgtgacggc gcagcacgcc gcggccggtc agctcgagcc gatcgagcgc
      961 gcgagccagg acgagttgcg cgcgctgcag ttgcagcgcc tgcaatggag cctgcatcac
     1021 gcctacgcca acgtcgccca ctaccgccag gctttcgatc gtcagggtgt gcacccgggc
     1081 gatctgaagt cgctcgccga cctggcgcgc ttcccgttca cgttcaaatc cgatttccgc
     1141 gacaactatc cgttcggatt gctcgccgta ccccgcgaca aagtcgcgcg tctgcatgcc
     1201 tcgtccggga cgaccggcaa gccgaccgtc gtgggctaca ccgccaagga catcgacatc
     1261 tgggccgacc tcgtcgcgcg ctcgatccgc gcggcgggcg ggcggcccgg cgacatcgtg
     1321 cacgtggcct acggctacgg cctcttcacc ggcgggctcg gcgcccatta cggcgccgaa
     1381 cggctcggct gcacggtgat cccgatgtcg ggcggccaga ccgagaagca ggtgcagctg
     1441 atcctcgacc tgaagcccga catcatcatg gtcacgccct cgtacatgca ggtgctgatc
     1501 gaggaattcg tgcgcctcgg actcgacccg cggcagtcga gcctcaggat cggcatcttc
     1561 ggcgccgagc cgtggaccga ggcgatgcgg cgcgagatcg agaccaatgc cggcatcgat
     1621 gcggtcgaca tctacggcct ctcggaagtc atgggcccgg gcgtcgccag cgagtgcg
//
LOCUS       DASVHM010000208         3820 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_14400, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000208 DASVHM010000000
VERSION     DASVHM010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3820
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14400"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2312)
                     /gene="nirB"
                     /locus_tag="VF308_04100"
     CDS             complement(<1..2312)
                     /gene="nirB"
                     /locus_tag="VF308_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008942 - nitrite reductase [NAD(P)H]
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0042128 - nitrate assimilation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase large subunit NirB"
                     /protein_id="HEX7435863.1"
                     /translation="MKNERIPLQRQKLVMVGNGMAGVRTLEELLKIAPDLYDITVFGA
                     EPHPNYNRILLSPVLAGEQTIAEIVLNPVEWYAEHSIALHLGKKVTRIDRRSRIVHSA
                     DGTEAPYDRLLLATGSQPFILPVPGKELDGVIAYRDIADTEAMIAAAARYRHAVVIGG
                     GLLGLEAANGLMRRGMKVTVVHIMPWLMERQLDEVAGAMLRKSLEDRGLSFLIGAQTE
                     ALIEGPDDRVRAVRFKDGTEIAADLVVMAAGIRPNTDLAESAGILCQRGVVVSDTLQT
                     VTDPRIYAVGECASHRGIAYGLVAPLFEQGKVCATHLAQFGIGRYTGSQVSTKLKVTG
                     IDLFSAGRFMGGEDCEEIVMSDPYSGVYKKLVIKDDKLVGAVLYGDTVDGSWYFKLVR
                     EGRLVNDIRERLMFGESNIGDTGHEGQTRAAAMAASDEVCGCNGVNKGTICKAIADKG
                     LFTLEEVRKHTKASASCGSCTGLVEQLLMFTAGGDYSATPKLKAMCGCTDVGHQDVRD
                     AIRQQHLTAAPAVRTALGWRTPDGCASCRPALNYYLLSTWPKEAEDDPQSRYINERSH
                     ANIQKDGRYSVIPRMWGGETNASELRRIADVVDKYKVPTVKVTGGQRIDLLGVKKEDL
                     QAVWKDLDMPSGHAYAKALCTVKTCVGSEWCRFGTQDSTQMGKDIERALWRMYAPHKV
                     KLAVSGCPRNCAESGIKDVGVIGVDSGWEIYVAGNGGIKTEVAQFLCKVKTSAEVLEV
                     SGAFLQLYREEGWYLERTVHYVGRVGLDHV"
     gene            complement(2328..3140)
                     /locus_tag="VF308_04105"
     CDS             complement(2328..3140)
                     /locus_tag="VF308_04105"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435864.1"
                     /translation="MNSYIKVEHVEMVFATRKGRFHALHDINLDVARGEFITLIGHSG
                     CGKSTLLNLIAGLLLPTSGILLCDNREIGAPGPERAVVFQNHSLLPWMTCLENVHLAV
                     ESVFAAAESRSQLKERAQAALALVGLTHAEAKRPGEISGGMKQRVGIARALAMAPKVL
                     LMDEPFGALDALTRARLQDELMKIVASTGSTVVMVTHDVDEAVLLSDRVVMMTNGPAA
                     TIGDVLAVPIAPVRESPRNRIELAHHAGYLESRERVLEFLYRKQAHVEPQVA"
     gene            complement(3147..>3820)
                     /gene="ntrB"
                     /locus_tag="VF308_04110"
     CDS             complement(3147..>3820)
                     /gene="ntrB"
                     /locus_tag="VF308_04110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015414 - ABC-type nitrate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015706 - nitrate transmembrane transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nitrate ABC transporter permease"
                     /protein_id="HEX7435865.1"
                     /translation="PTPAATFAEAVRLFSDPFYRKGPNDQGIGWNVLFSLERVAVGFG
                     LAAMVGIPLGFMIGRFEFLNRMVSPLISLLRPVSPLAWLPIGLLVFKAANPAAIWTIF
                     ICSIWPMIINTAVGVKSVPEDYLNVARVLRLSEWKVITKILLPAVLPYMLTGVRLSVS
                     TAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVQHILIAIFVIGLVGLLLEQVLVTLARR
                     VTFEA"
BASE COUNT          592 a         1262 c         1299 g          667 t
ORIGIN      
        1 ttgacgtggt cgagtccgac acggccgaca tagtgcacgg tgcgctccag ataccagcct
       61 tcctcgcggt agagctgcag gaacgcgccg ctgacttcga gcacctcggc cgaggtcttc
      121 accttgcaga ggaactgcgc gacctcggtc ttgatgccgc cgttgccggc gacgtagatc
      181 tcccagcccg aatcgacgcc gatcacgccg acgtccttga tgcccgactc ggcgcagttg
      241 cgcgggcagc ccgagaccgc gagcttgacc ttgtgcggcg catacatgcg ccagagtgcg
      301 cgttcgatgt ccttgcccat ctgggtcgaa tcctgcgtgc cgaagcggca ccattcgctg
      361 ccgacgcagg tcttcacggt gcacagcgcc ttggcgtagg cgtggccgga cggcatgtcg
      421 aggtccttcc agacggcctg aaggtcctcc ttcttcacgc cgagcaggtc gatgcgctgg
      481 ccgccggtca ccttcacggt cgggaccttg tacttgtcga cgacgtcggc gatgcggcgc
      541 agttccgagg cgtttgtttc gccgccccac atgcgcggaa tcaccgagta gcggccgtcc
      601 ttctggatgt tggcgtggct gcgctcgttg atgtagcgcg actgcggatc gtcctcggcc
      661 tccttgggcc aggtgctcag caggtagtag ttgagggccg ggcggcagct cgcgcagccg
      721 tcgggcgtgc gccagccgag cgccgtgcgc actgcgggcg ccgcggtcag gtgctgctgc
      781 cggatcgcgt cgcgcacgtc ctggtggccg acgtcggtgc agccgcacat cgccttcagc
      841 ttcggcgtgg cgctgtagtc gccgccggcg gtgaacatca gcagctgttc gacgagcccc
      901 gtgcacgacc cgcacgacgc gctcgccttg gtgtgcttcc tcacctcttc gagcgtgaac
      961 agtcccttgt cagcgatcgc cttgcagatc gtgcccttgt tgacgccgtt gcagccgcag
     1021 acctcgtcgc tcgcggccat ggccgcggcg cgggtctggc cctcgtggcc ggtgtcgccg
     1081 atgttcgatt cgccgaacat caggcgctcg cgaatgtcgt tgaccagccg gccttcgcgc
     1141 acgagcttga aataccacga gccgtccacc gtgtcgccgt agaggactgc tccgaccagc
     1201 ttgtcgtcct tgatcacgag tttcttgtag acgccggagt acgggtcgct catgacgatt
     1261 tcctcgcagt cctcgccccc catgaatcgg ccggccgaaa agaggtcgat gccggtgacc
     1321 ttgagcttgg tcgagacctg gctgccggtg tagcggccga tgccgaactg cgcgaggtgg
     1381 gttgcgcaga ccttgccctg ctcgaagagc ggcgcgacca ggccgtaggc gatgccgcgg
     1441 tggctcgcgc attcgcccac cgcgtagatg cgcgggtcgg tcacggtctg caaggtgtcg
     1501 ctgacgacga cgccgcgctg gcagaggata ccggccgatt cggcgaggtc ggtgttgggg
     1561 cggatgccgg ccgccatgac gaccaggtcg gcggcgatct cggtgccgtc cttgaagcgc
     1621 accgccctga cacggtcgtc ggggccttcg atcagggctt cggtctgcgc cccgatcagg
     1681 aaggagaggc cgcgatcctc gagcgacttg cgcagcatcg cgccggccac ctcgtcgagc
     1741 tggcgctcca tcagccacgg catgatgtgc accacggtca ccttcatgcc gcgccgcatc
     1801 agcccgttgg ccgcttccag gccgagcagg ccgccgccga tcacgaccgc atgccggtag
     1861 cgcgctgccg cggcgatcat tgcctcggtg tcggcgatgt cgcggtaggc gatcacgcca
     1921 tcgagctcct tgccgggcac cggcaggatg aacggttgcg acccggtggc gaggagcagt
     1981 cggtcgtacg gtgcctcggt gccgtcggcg ctgtggacga tccggctgcg ccgatcgatg
     2041 cgggtgacct tcttgccgag atggagcgcg atcgagtgtt cggcgtacca ctcgaccggg
     2101 ttcagcacga tctcggcgat cgtctgttcg cccgccagca ccggcgacag caggatgcgg
     2161 ttgtagttcg ggtgcggctc ggcaccgaac acggtgatgt cgtagaggtc gggcgcgatc
     2221 ttcaggagct cttcgagcgt gcgaacgccg gccatgccgt tgcccaccat cacgagcttc
     2281 tggcgctgga gcgggatgcg ttcgttcttc atcggcggtg ctcggtttca ggccacttgg
     2341 ggttcgacgt gagcctgctt gcggtacagg aactcgagca cgcgctcgcg cgattcgagg
     2401 tagcccgcgt ggtgcgccag ctcgatgcgg ttgcgcggtg attcgcgcac cggcgcgatc
     2461 ggcaccgcca gcacgtcgcc gatggtcgcg gccgggccgt tggtcatcat cacgacgcgg
     2521 tccgagagca gcaccgcctc gtcgacgtcg tgcgtcacca tcaccacggt cgagccggtg
     2581 ctcgcgacga tcttcatcag ctcgtcctgc agccgcgcgc gggtcaacgc gtcgagcgcg
     2641 ccgaacggtt cgtccatcag cagtaccttc ggcgccatcg cgagggcgcg cgcgatgccg
     2701 acgcgctgct tcatcccgcc cgagatctca cccggtcgct tcgcctccgc atgggtcagg
     2761 ccgacgaggg cgagcgcggc ctgggcccgt tccttcaact ggctgcgcga ttcggcggcc
     2821 gcgaacacgc tctcgaccgc gaggtggacg ttctcgaggc aggtcatcca cggcagcagc
     2881 gaatggttct gaaacaccac ggcgcgttcg gggccgggcg cgccgatctc gcggttgtcg
     2941 cagagcagga tgcccgaggt cggcagcagc aggcccgcga tcaggttcaa gagggtcgac
     3001 ttgccgcagc ccgaatggcc gatcagcgtg atgaattcgc cgcgcgcgac gtcgaggttg
     3061 atgtcgtgca gcgcatgaaa gcgccccttg cgggtcgcga agaccatctc gacgtgctcg
     3121 accttgatgt aggaattcat ggcggctcag gcttcgaagg tgacgcggcg cgccagcgtg
     3181 accagcacct gttcgagcag cagcccgacc aagccgatca cgaagatcgc gatcaggatg
     3241 tgctggacgt tgaggttgtt ccactcgtcc cagacccaga agccgatgcc cacgccgcca
     3301 gtcagcattt cggcggcgac gatgacgagc caggctgtgc tcaccgaaag gcgcacgccg
     3361 gtcagcatgt agggcagcac ggccggcagc aggatcttcg tgatgacctt ccactcggaa
     3421 aggcgcagca cccgcgcgac gttgaggtag tcctcgggca cgctcttcac gccgaccgcg
     3481 gtgttgatga tcatcggcca gatcgagcag atgaagatgg tccagatcgc ggccgggttc
     3541 gcggccttga agaccagcag cccgattggc agccaggcga gcggcgagac cgggcgcagc
     3601 aggctgatca gcggcgagac catgcggttg aggaactcga agcggccgat catgaagccg
     3661 agcggtatgc cgaccatcgc cgcgaggccg aagccgaccg cgacgcgctc gagcgagaac
     3721 agcacgttcc agccgatccc ctggtcgttc ggccccttgc gatagaacgg gtcggagaag
     3781 agccgcaccg cttcggcgaa cgtcgccgcc ggcgtcggaa
//
LOCUS       DASVHM010000209         3507 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_881559, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000209 DASVHM010000000
VERSION     DASVHM010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3507
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_881559"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..322)
                     /locus_tag="VF308_04115"
     CDS             complement(<1..322)
                     /locus_tag="VF308_04115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7435866.1"
                     /translation="MLRVAGLRVSYGGIQAVKGVSFEVMEGELVSLIGANGAGKTTTL
                     KAITGTQAAAGGEIEFMGRSIRGQGPWDLVKQGLVMVPEGRGVFARMTITENLQMGAF
                     VRNDV"
     gene            complement(343..1179)
                     /locus_tag="VF308_04120"
     CDS             complement(343..1179)
                     /locus_tag="VF308_04120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435867.1"
                     /translation="MSDPILRVTGVSKRFGGLQALSDVGITIAPGQVYGLIGPNGAGK
                     TTFFNVLTGLYMPDSGTFELGGKPYRPSAVHEVAKAGIARTFQNIRLFADMTALENVM
                     VGRHVRTHSGLVGAVFRTPKFKAEEVAIAGRAQELLDYVGIGGFAEYKARTLSYGDQR
                     RLEVARALATDPKLIALDEPAAGMNATEKGTLRELIDRIRKDGRTILLIEHDVKLVMG
                     LCDRVTVLDYGKQIAEGTPAEVQRNEKVIEAYLGRSPEVGPSAQDGTTPNPAFPLEGG
                     RS"
     gene            complement(1176..2345)
                     /locus_tag="VF308_04125"
     CDS             complement(1176..2345)
                     /locus_tag="VF308_04125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013595674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435868.1"
                     /translation="MGAAVLLCILPFVVQMAGNAWVRIIDIALLYVLLALGLNVVVGY
                     AGLLDLGYVAFYAVGAYMLGLLASPQLTDTFAGIASTFQNGLHTPWWVVIPLGALVAG
                     GAGVLLGAPTLKLRGDYLAIVTLGFGEIVRVFMNNLDAPVNITNGPKGITAIDEISIF
                     GFSLGRTQHFFGLEWPKVTNYYFLFLLLVIFAVVICHRLERSRIGRAWMAIREDEVAA
                     KAMGINTRNLKLLAFGMGATFGGVSGVMFASFQGFISPESFSLQESVMIVAMVVLGGI
                     GHLPGVIVGALLLAALPEVLRYVAGPLQQMTEGRLDASILRQLLIALAMIGIMLSRPR
                     GLWPSPEHGRVRAGGAETPPPQGPGGELPVKLPHGELPPARQIPPTTGHIVPTER"
     gene            complement(2404..3327)
                     /locus_tag="VF308_04130"
     CDS             complement(2404..3327)
                     /locus_tag="VF308_04130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007863162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435869.1"
                     /translation="METFVQQIINGLVLGSVYALVALGYTMVYGIINLINFAHGEVLM
                     VGALTSWTVVTVLAGLGLPGWVLLLIGLVAAVIVCSVLNFAIEKIAYRPLRNAPRLAP
                     LITAMGMSLLLQTLAMIIWKPNYKSFPILLPGDPHVVFGAVINNVQILILVSTGITLS
                     GLMYLVNHTRLGRAMRATAENPRVAALMGVKPDTVISATFVIGAALAALAGVMYAANY
                     GSVQHSMGFLPGLKAFTAAVFGGIGNLAGAMVGGVLLGLIESLGAGYIGELTGGVLGS
                     HYQDIFAFVVLILVLTLRPQGLLGERVADRA"
BASE COUNT          587 a         1160 c         1230 g          530 t
ORIGIN      
        1 tgacgtcgtt gcggacgaac gcgcccatct gcaggttctc ggtgatcgtc attcgcgcga
       61 acacgccgcg cccctcgggc accatgacga ggccctgctt gaccaggtcc cacgggccct
      121 ggccgcggat gctgcggccc atgaactcga tctcgccgcc ggccgccgcc tgggtgccgg
      181 tgatggcctt cagcgtcgtc gtcttgccgg cgccgttggc gccgatcagg ctgaccagct
      241 cgccttccat cacctcgaac gagacgccct tgacggcctg gatgccgccg tacgagacgc
      301 gcaggccggc gacgcgcagc atcgtcttcg tcatgaccgc ggtcaactcc ttcccccttc
      361 gagggggaag gcagggttgg gggtggtccc atcctgggcc gacgggccta cctcgggcga
      421 gcgcccgagg taggcctcga tcaccttctc gttgcgctgc acctcggccg gcgttccttc
      481 ggcgatctgc ttgccgtagt cgagcacggt gacgcggtcg cacaggccca tgacgagctt
      541 gacgtcgtgc tcgatgagca ggatcgtccg gccgtccttg cggatgcggt cgatcagctc
      601 gcgcagcgtc cccttctcgg tcgcgttcat gccggcagcg ggctcgtcga gggcgatcag
      661 cttcgggtcg gtggcgagcg cgcgcgccac ctcgaggcgg cgctggtcgc cgtagctgag
      721 cgttcgcgcc ttgtactcgg cgaagccgcc gatgccgacg taatcgagca gctcctgcgc
      781 gcgcccggcg atcgccactt cctcggcctt gaacttcggc gtgcgaaaca ccgcgccgac
      841 gagccccgaa tgcgttcgca cgtggcggcc gaccatgacg ttctcgagtg ccgtcatatc
      901 ggcgaagagg cggatgttct ggaacgttcg ggcgattccc gccttggcga cctcgtgcac
      961 cgcgctcggc cgataaggct tgccgccgag ctcgaacgtt cccgagtcgg gcatgtacag
     1021 gccggtgagg acgttgaaga acgtcgtctt gccggcgccg ttcggaccga tcagcccgta
     1081 gacctggccc ggcgcgatcg tgatgccgac gtcggagagc gcctgcaggc cgccgaagcg
     1141 cttcgagacg ccggtcacgc gcaggatcgg atcgctcatc gctccgtcgg cacgatgtgc
     1201 ccggtggtcg gcgggatctg cctggccggc ggcagctcgc cgtgcggcag cttcaccggc
     1261 agctcgccgc ccgggccctg cggcggcggc gtctcggcac cgcctgcccg cacccggccg
     1321 tgctccggcg acggccagag tccgcgcggg cgcgacagca tgatgccaat catcgccagc
     1381 gcgatcagca gctggcgcag gatcgacgca tcgaggcggc cttcggtcat ctgctgcagc
     1441 ggcccggcga cgtagcgcag cacctcgggc agcgccgcga gcagcaaggc gccgacgatc
     1501 acgccgggca gatgaccgat gccgccgaga acgaccatcg cgacgatcat caccgattcc
     1561 tgcaggctga acgactccgg cgagatgaag ccctggaagc tcgcgaacat gacgccggag
     1621 acgccgccga aggtggcacc catgccgaac gcgagcagct tgaggttgcg ggtgttgatc
     1681 cccatcgcct tggcggcgac ctcgtcctcg cggatcgcca tccaggcgcg gccgatgcgg
     1741 ctgcgctcga ggcgatggca gatcacgacc gcgaagatga cgaggagcag gaacaggaag
     1801 tagtagttgg tgaccttcgg ccactcgagg ccgaagaagt gctgcgtcct gccgagcgag
     1861 aagccgaaga tcgagatctc gtcgatggcg gtgatgccct tcgggccgtt ggtgatgttg
     1921 accggcgcgt cgaggttgtt catgaacacg cgcacgatct cgccgaagcc gagggtgacg
     1981 atggccaggt agtcgccgcg cagcttcagc gtcggcgcgc cgagcaggac gccagcaccg
     2041 ccggccacga gggcaccgag cggaatgacg acccaccacg gcgtgtgcag gccgttctgg
     2101 aacgtactgg cgatgccggc gaaggtgtcg gtgagctgcg gcgacgcgag caggccgagc
     2161 atgtacgcgc cgaccgcgta gaaggcgacg tagccgaggt cgagcaggcc ggcatagccg
     2221 acgacgacgt tgaggccgag cgcgagcagg acgtagagga gcgcgatgtc gatgatccgc
     2281 acccaggcat tgccggccat ctggacgacg aacggcagga tgcagagcag caccgcggcg
     2341 ccgatgaaga cgaccagctt ctgctggcgg gtggcgtcgg aaaagcgcgt cacgggagcg
     2401 ccctcacgct ctgtctgcga cgcgctcgcc gagcaggccc tgcggcctga gggtgagcac
     2461 gaggatgagg acgacgaagg cgaagatgtc ctggtagtgg ctgccgagga cgccgccggt
     2521 gagttcgccg atgtagccgg cgccgagcga ttcgatcagg ccgagcagga cgccgccgac
     2581 catcgcgccg gcgaggttgc cgatgccgcc gaagaccgcc gccgtgaacg ccttcaggcc
     2641 cggcaggaag cccatcgagt gctgcaccga gccgtagttg gcggcgtaca tcacgccggc
     2701 gagcgcggcc aacgcggcgc cgatgacgaa ggtcgccgag atcacggtgt cgggtttgac
     2761 gcccatcagc gcggcgacgc gcgggttctc ggcggtcgcc cgcatcgccc ggccgaggcg
     2821 ggtgtggttg accaggtaca tgaggcccga gagcgtgatt ccggtggaga cgaggatcag
     2881 gatctgcacg ttgttgatga ccgcgccgaa gacgacgtgc gggtcgccgg gcaggaggat
     2941 cgggaacgac ttgtagttcg gcttccagat gatcatcgcc agcgtctgca ggagcaggct
     3001 cattcccatc gccgtgatca gcggcgccag gcgcggtgcg ttgcgcagcg gccggtaggc
     3061 gatcttctcg atcgcgaagt tgagcaccga acagacgatg acggcggcga cgaggccgat
     3121 caggagcagc acccagcccg gcaggccgag gccggcgagc accgtgacca ccgtccagct
     3181 cgtcagcgcg ccgaccatca gcacttcgcc atgcgcgaag ttgatcaggt tgatgatccc
     3241 gtacaccatc gtgtagccga gcgcgaccag cgcatagacg ctgccgagca ccagcccgtt
     3301 gatgatctgc tggacgaagg tctccatgcg cgccgactct attagcaatt cccctgccac
     3361 cacctaggga ctgcccgatg gcggcgaccg gcggcggttg actttggcgc cgttgtggac
     3421 aacgctcccg ccacgagacg gagacagggg agcgtcatga cattgcggaa ccggaccatc
     3481 ttcatttccg gggccagccg cggcatc
//
LOCUS       DASVHM010000210         1595 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_302250, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000210 DASVHM010000000
VERSION     DASVHM010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302250"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            33..>1595
                     /locus_tag="VF308_04135"
     CDS             33..>1595
                     /locus_tag="VF308_04135"
                     /inference="COORDINATES: protein motif:HMM:NF037276.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435870.1"
                     /translation="MARVGDENRLVVDSQADDLQDNVPPPYAIYMFDPAQQTFLIVAA
                     PPARFMYTHPVALQAKTEPNATDPTPVDATLAAQNLGLLAVRSVYDTDGLGRMGDAVL
                     TAVDLPAGCTTAIAKTAPSDPEDTRAQVADLVRIKDLANAAYGCAPARFIRAIRAVAP
                     TAGMTGMRSAIGETEFEMTQLLGYAPIEPDGSFTLTVPADTPIGLAVVDAQGRAFQTH
                     TNWIQVRPGERRTCDGCHSPRRGAAINSGAVVNSVPAAILPALASAHQSGETMAGTRT
                     RLDASALLLGPDMMYSDIWADTSKPGVTARTAIAVRYTGNANAVDDLVTVAPTNGVIN
                     YPDHIQPLWTRNRGANTCTNCHNDPDKLDRGATIAGDGRVASYDEVMIGDPVLDPVTG
                     LPETMIEEGVLVIKRGPALVSTAASEGGVIGLTRQSRLGEILWGQSLMAGSGALAAHP
                     NPPASAPDHSKLLNAAEKRLLAEWIDTGGKYYNDPFNAANGMRVIKALSEDTFTAQVL
                     PIITSTCAAACHQ"
BASE COUNT          272 a          587 c          516 g          220 t
ORIGIN      
        1 tcgtctcgtg cgcgacgctg actgccgcgg agatggcacg cgttggcgac gagaaccgcc
       61 tcgtcgtcga cagccaggcc gacgatctcc aggacaacgt gccgccgccc tacgcgatct
      121 acatgttcga cccggcgcag cagaccttcc tcatcgttgc cgcgccgccc gcgcgcttca
      181 tgtacaccca tccggtcgcg ttgcaagcga aaaccgaacc gaatgcgacg gatccgaccc
      241 ctgtcgacgc gacgctcgcg gcgcagaacc tcggcctgct cgcggtgcgc agcgtctacg
      301 atacggacgg tctcggccgc atgggcgacg cggtgctgac cgccgtcgat ctgccggcgg
      361 gatgcacgac ggcgatcgcg aagacggcgc cttccgatcc ggaggacacg cgcgcgcagg
      421 tcgccgatct cgtgcgcatc aaggatctgg ccaacgccgc gtatggctgc gcgccggccc
      481 gcttcatccg tgccattcgc gcggtcgcgc cgaccgccgg catgacgggc atgcgcagcg
      541 cgatcggcga gaccgagttc gagatgacac agctcctcgg ctacgcgccg atcgagcccg
      601 acggttcgtt cacgctcacg gtgccggccg atacgccgat cggcctggcc gtcgtcgatg
      661 cgcaggggcg tgctttccag acccacacga actggatcca ggtgcgcccg ggcgagcgcc
      721 gcacctgcga cggctgccac agtccgcggc gcggcgctgc gatcaactcg ggcgccgtcg
      781 tcaacagcgt gccggcggcg atacttccgg ccttggccag cgcccaccag tcgggcgaga
      841 cgatggcggg aacgcgcacg cgcctcgacg cgtcggcact gctgctcggc cccgacatga
      901 tgtattccga catctgggcc gacacgagca agcccggcgt cactgcccgc accgcgatcg
      961 cggtgcgcta cacgggcaat gccaacgccg tggatgacct ggtgaccgtg gccccgacca
     1021 atggcgtcat caactatccc gaccacatcc agccgctgtg gacgcgcaac cgcggggcca
     1081 atacctgcac gaactgccac aacgaccccg acaagctcga ccgcggcgcc acgatcgccg
     1141 gcgatggccg cgtcgcctcg tacgacgaag tgatgatcgg cgatccggtg ctcgacccgg
     1201 tcaccggcct gccggagacc atgatcgaag agggcgtgct cgtgatcaaa cgcgggcccg
     1261 cgttggtcag caccgcggcc agcgagggcg gcgtgatcgg cctgacgcgc cagagccggc
     1321 tcggcgagat cctctggggc cagagcctga tggccggcag cggtgcactg gccgcgcatc
     1381 cgaacccgcc ggcctcggcg cctgatcact cgaaattgct caacgccgcc gaaaagcgcc
     1441 tgctcgccga gtggatcgac accggcggca agtactacaa cgacccgttc aacgcggcca
     1501 acggcatgcg cgtgatcaag gccctcagcg aagacacgtt caccgcgcag gttctgccga
     1561 tcatcacgtc gacctgcgcc gcggcctgcc accag
//
LOCUS       DASVHM010000211         2101 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1025059, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000211 DASVHM010000000
VERSION     DASVHM010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1025059"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..517
                     /locus_tag="VF308_04140"
     CDS             116..517
                     /locus_tag="VF308_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018904550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEX7435871.1"
                     /translation="MTGVRLDKWLWAARFFKTRGLSSDEIGKGRVSVNGQPAKASREV
                     RVGDSIELRQNHVPRTVVVKDTSNVRGPAPAARALYEETPESVALRARIASERRLAAE
                     PAGSLEQGRPTKRDRRQLADWSRWSASVDPE"
     gene            642..1175
                     /gene="grpE"
                     /locus_tag="VF308_04145"
     CDS             642..1175
                     /gene="grpE"
                     /locus_tag="VF308_04145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEX7435872.1"
                     /translation="MSNADQDHISTEPAASVEPADAPAAADPQQKLAELESRHAEMAD
                     AFLRAKADAENTRRRAEDEIAKARKFAVEGFAESLLPVKDSLEAAIAIPAATPEQLLE
                     GVHATLRQLAAALERNKVVEISPSAGVRFDPHQHQAISVVPADQEPNTVVHLLQKGYS
                     IADRVLRPALVTVTATA"
     gene            1234..>2101
                     /locus_tag="VF308_04150"
     CDS             1234..>2101
                     /locus_tag="VF308_04150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019655814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEX7435873.1"
                     /translation="MAKMIGIDLGTTNSCVAVMEGNTTKVIENSEGARTTPSVVAYQE
                     DGEILVGASAKRQAVTNPKNTLYAVKRLIGRKFSEKEVQKDIDLMPYKIVAADNGDAW
                     VEVRGKKLAPQQISAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRI
                     AGLDVKRIINEPTAAALAFGLDKHGKGDRKIAVYDLGGGTFDISVLEIGDGVFEVKST
                     NGDTFLGGEDFDLRVIDYLADEFKKDNGIDLRRDKLALQRLKEAAEKAKIELSTLLET
                     EINLPFITADASG"
BASE COUNT          437 a          706 c          682 g          276 t
ORIGIN      
        1 tcgccggatc tgcgggagct cgagttgcag ggcgcgcggg cgacgcgcct cggggccacg
       61 acttgatgag gctggcgggc ccgcgccatg ccctttcccc ttgcgaaggc aacggatgac
      121 cggcgtgaga ctcgacaagt ggctctgggc ggcgcgcttt ttcaagacgc gcgggctttc
      181 cagcgacgag atcggtaagg gccgtgtcag cgtcaacggc cagccggcca aggcatcgcg
      241 cgaagtcagg gtcggcgaca gcatcgaact gcgccagaac cacgtgccgc gcaccgtggt
      301 cgtcaaggac acgagcaacg tgcgcggccc ggccccggcc gcacgggcct tgtacgagga
      361 aacgcccgaa agcgtcgccc tgcgtgcccg gatcgcttcc gagcgccgcc tcgcggcaga
      421 gcctgccggc agcctcgagc agggccgccc gaccaagcgc gaccgccgcc agctcgcgga
      481 ctggagccgc tggagcgcct cggtcgatcc cgagtgaatg ggatgcggcg cgccagcgcg
      541 ctcccgcgct ttcagccctg aagcctccaa aggcgcgtaa taacctcttg aaggcgaagg
      601 gaatcgcccc attttcatta cttcggagcg cttcaaaaaa catgtcgaac gctgatcaag
      661 accacatttc cacggagccg gccgcctcgg ttgagcccgc ggatgcgccg gccgctgccg
      721 acccgcaaca aaagctggcc gaactcgagt cgcgccacgc cgaaatggcc gacgcctttc
      781 tgcgcgccaa ggccgacgcc gagaacacgc ggcgccgcgc cgaggacgag atcgccaagg
      841 cacgcaagtt cgccgtcgaa ggcttcgcgg agagcctcct gccggtcaag gacagcctcg
      901 aggcggcgat cgcgattccc gcagccacgc ccgagcaact gctcgagggc gtgcacgcca
      961 cgctgcgcca gctggccgcg gcgctcgagc gcaacaaggt ggtcgagatc agtccgagcg
     1021 ccggcgtccg cttcgatccg caccagcacc aggcgatcag cgtggtgccg gccgaccagg
     1081 aacccaacac cgtcgtgcac ctgctgcaaa aaggctactc gatcgccgat cgcgtgctgc
     1141 gaccagccct cgtcacggtc acggcaacgg cttgaaagcg cagcggccat ccctacctcg
     1201 gaaacgagaa gattcaattc aggagcagac aacatggcaa agatgatcgg catcgacctg
     1261 ggcaccacca actcatgcgt cgcggtgatg gaaggcaata ccaccaaggt gatcgagaac
     1321 agcgaaggcg cgcgcacgac gccctcggtg gtcgcgtacc aggaggacgg cgaaatcctc
     1381 gtcggcgcct cggccaagcg ccaggcggtc acaaatccga agaacaccct gtacgcggtc
     1441 aagcgcctga tcggccgaaa gttctccgag aaggaagtgc agaaggacat cgacctgatg
     1501 ccctacaaga tcgtcgccgc cgacaacggc gacgcctggg tcgaggtgcg tggcaagaag
     1561 ctggcgccac agcagatctc ggccgaagtg ctgcgcaaga tgaagaagac ggccgaagac
     1621 tacctcggcg aagaggtcac cgaggcggtg atcacggtgc cggcgtattt caacgacgcg
     1681 cagcgccagg ccacgaagga tgccggacgc atcgccggcc tcgacgtgaa gcggatcatc
     1741 aacgagccga ccgcggcggc gctcgcgttc gggctcgaca agcacggcaa gggcgatcgc
     1801 aagatcgccg tctatgacct cggcggcggc accttcgaca tctcggtgct ggaaatcggc
     1861 gacggcgtgt tcgaggtgaa atccaccaac ggcgacacct tcctcggcgg cgaggatttc
     1921 gacctgcggg tgatcgatta cctggccgac gagttcaaga aggacaacgg catcgacctg
     1981 cgccgagaca agctggcgct gcagcggctc aaggaagccg ccgagaaggc caagatcgag
     2041 ctatccacgc tgctcgagac cgagatcaac ctgcccttca tcacggccga cgccagcggc
     2101 c
//
LOCUS       DASVHM010000212         4686 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_158839, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000212 DASVHM010000000
VERSION     DASVHM010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4686
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158839"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..522
                     /gene="fusA"
                     /locus_tag="VF308_04155"
     CDS             <1..522
                     /gene="fusA"
                     /locus_tag="VF308_04155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560523.1"
                     /note="EF-G; promotes GTP-dependent translocation of the
                     ribosome during translation; many organisms have multiple
                     copies of this gene; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEX7435874.1"
                     /translation="VDAVKGGTIPGVFIPAVEKGVRQAMASGVITGHALTDVRVTVYD
                     GKHHTVDSKEIAFITAGRKAFVDAVLKARPIVLEPIVNVEITAPEAYIGDITGDLSSR
                     RGQVSGTRAATSGALYVLGQAPLAELASYQLRLNAMTGGQGRYTLALSHYEAVPPAVQ
                     QQLVAQHRSPETE"
     gene            complement(533..1159)
                     /locus_tag="VF308_04160"
     CDS             complement(533..1159)
                     /locus_tag="VF308_04160"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008161580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX7435875.1"
                     /translation="MRNRDELESITARTLAHYNGRAAEFREGTRDHEVAQNIDALLRH
                     IEGAAPYTILDLGCGPGRDLKTFTRLGHRAIGLDGAERFVAMVRAESACEVWHQDLLA
                     LALPDETFDGVFANAVLFHVPTQELPRVLRQLHATLKPRGVLFSSNPRGSNEEGWNGA
                     RYGAFHDLAHWRAHLSEAGFTELEHYYRPPGLPREQQPWLASVWRRAT"
     gene            complement(1171..3612)
                     /locus_tag="VF308_04165"
     CDS             complement(1171..3612)
                     /locus_tag="VF308_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007870262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7435876.1"
                     /translation="MDLPTQARIVIVGGGIAGCSTAYHLSLMGQTDVLLLEQGRLTCG
                     TTWHAAGLVGQMRPNRNMTAMSKYGIELYAKLEAETGLATGWKQCGSVNVARTPERMR
                     SLKKQVSLARSFGVEVEIITPRQAGDLYPLLRTDDLAGAIWIPGDGKANPADLTMSLA
                     KGARNRGVRIVEGVEVTGVLQQGGRATGVRTRVDGETHDVACEVLVNCAGQWARQFGR
                     LAGVNVPLYSAEHFYIVTDRIDGVHPMLPVMRDPDGCIYYKEEVGGLVMGGFEPQAKP
                     WRMDPIPSTFQFELLGEDWNQFEILMTNAIHRTPCLETAKIKMLLNGPESFTPDGNFI
                     LGEAPELRNCFVAAGFNSAGIANSGGAGKLIAEWIVGGEAPSDLWDVDIRRFGPFMAN
                     RKALAARTGETLGLHYAMRWPRQELETARPLRTSPLYDLLNARGAAFGSKNGWERANY
                     FVPSGAPPAAPTLGKPEWLPWMIEEQRATREAVALYDQTSFSKLLLQGRDALAVLQRL
                     CANEIDVPVDKMVYTALLNERGGFESDLTVIRLAAERFLIVTGSAQTTRDLDWIARHI
                     DAAREHAVLTDVSALYSVLSVMGPNARALLARVSPDDLGPEGLKFSHTREIDVGLARV
                     RAARMSYVGGPGFELYVPIEMARHVYLALHEAGTGLGLAGGGLKDAGYYALDALRIEA
                     GRRAWGAELGPDETPFEAGLGVAVRLSKAADFIGKAALLRLQHEPLRKKLVTVVLDAP
                     DAYAWGGEALARDGQPVGELSSVGWSPLAGACVGLGYLRGTAARRPHAGTPIEVDLWG
                     EPIPATAWDAWPAKK"
     gene            complement(3628..4482)
                     /locus_tag="VF308_04170"
     CDS             complement(3628..4482)
                     /locus_tag="VF308_04170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006296690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7435877.1"
                     /translation="MTWPVVLAVLCGALLHAAWNALIKSSGDKAVDTALVHSLAALLA
                     LPLMLWVGLPPRGAWPYIAASLVVHVGYYIALVGAYRHGDLGLTYPIMRGCAPLLVAL
                     ASTTLIGESPSAVAWLGIVGITAGVALVGLAHPGEALHHRKALAFAFANAAIIAVYTV
                     VDGLGVRTSGNALRYVTVLFVLDGITYPLCVWLRRSAESRAEVARYARGRWPVALLGG
                     GASIGSYAIALWAMTRAPVASVAALRETSVLFAALLGTVLLKERFGLQRAAGTGVIVG
                     GVMALRFG"
     gene            complement(4556..>4686)
                     /locus_tag="VF308_04175"
     CDS             complement(4556..>4686)
                     /locus_tag="VF308_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007870266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HEX7435878.1"
                     /translation="PGARDAVLLRQWDDLAKQAGLATPPLAHFLERAARCALPLAA"
BASE COUNT          707 a         1606 c         1692 g          681 t
ORIGIN      
        1 gtcgacgcgg tcaagggcgg cacgattccc ggcgtcttca tccccgcggt cgagaagggc
       61 gtgcgccagg cgatggcctc gggcgtgatc accgggcatg cactgaccga tgtgcgcgtt
      121 accgtctacg acggcaagca ccacaccgtc gacagcaagg aaatcgcctt catcacggcc
      181 ggtcgcaagg ccttcgtcga cgcggtgctc aaggcgcggc cgatcgtgct cgagccgatc
      241 gtcaacgtcg agatcaccgc gcccgaagcg tacattggcg acatcaccgg cgacctgtcg
      301 tcgcgacgcg ggcaggtgag cggcacgcgc gccgcgactt ccggtgccct ctacgtgctc
      361 ggccaggcgc cgctcgccga gctcgcgagc taccagttgc ggctcaacgc gatgaccggt
      421 ggccagggcc gctacacgct cgcgctgagc cactacgaag cggtgccgcc ggcggtccag
      481 cagcagctgg tcgcgcagca ccgcagtccc gaaaccgagt gatttcgcgc cgctaggtcg
      541 cgcggcgcca gacgctcgcc agccagggct gctgctcgcg cggcaggccg ggcggccggt
      601 agtagtgttc gagttcggtg aagccggctt ccgacaagtg cgcgcgccag tgcgccaggt
      661 cgtggaaggc gccgtaccgc gcgccgttcc agccttcctc gttcgagccg cgcgggttcg
      721 aactgaacag aacaccgcgc ggtttcagcg tggcatgcag ttgccgcagc acgcgcggca
      781 actcctgcgt cggcacgtgg aacagcacgg cattggcgaa gacgccgtcg aaggtttcat
      841 cgggcagcgc gagagccaga aggtcctggt gccagacctc gcaagcgctc tccgcgcgta
      901 ccatcgccac gaagcgttcg gccccgtcga gcccgatcgc ccgatgcccg agccgggtga
      961 acgtcttcag gtcgcggccc ggtccgcagc cgaggtcgag gatcgtgtag ggcgctgcgc
     1021 cctcgatgtg gcggagcagg gcgtcgatgt tctgggcgac ctcgtggtcg cgggtgcctt
     1081 cgcggaattc cgcggcgcgc ccgttgtagt gcgccagggt tcgggcagtg atcgactcga
     1141 gctcgtcgcg attgcgcatc gagggccgcc ttatttcttc gccggccatg catcccaggc
     1201 cgtcgccggg atgggctcgc cccagaggtc gacctcgatc ggcgtgcccg catgcggccg
     1261 gcgtgccgcc gtaccgcgca gatagccgag gccgacgcag gcgccggcca gcgggctcca
     1321 gccgaccgag gacagttcgc ccaccggctg gccgtcgcgg gcgagcgcct cgccgcccca
     1381 ggcatatgca tcgggcgcgt cgaggacgac cgtgaccagc ttcttgcgca gcggctcgtg
     1441 ttgcaggcgg aggagggcgg ccttgccgat gaaatcggcc gccttcgaga gcctgaccgc
     1501 gacgccgagg ccggcctcga agggcgtctc atcgggcccg agttccgccc cccaggcacg
     1561 ccggccagcc tcgatgcgca gcgcatcgag ggcgtagtag ccggcgtcct tcagtccccc
     1621 gccggcgagt ccgaggcccg tgcccgcctc gtgcagggcc aggtagacgt ggcgcgccat
     1681 ctcgatcggc acgtagagct cgaagccggg gccgccgaca tagctcatgc gggcggcgcg
     1741 cacgcgggcg aggccgacgt cgatctcccg ggtgtgcgag aacttcaggc cttcggggcc
     1801 gaggtcgtcg gggctcacgc gggcgagcag ggcgcgcgcg ttcggcccca tcaccgaaag
     1861 caccgaatac agggcgctca cgtcggtgag caccgcgtgt tcccgcgccg catcgatgtg
     1921 acgcgcgatc cagtccaggt cgcgggtggt ctgcgccgaa ccggtgacga tcaggaagcg
     1981 ctcggccgca aggcgtatca cggtcaggtc gctctcgaag ccgccgcgct cgttgagcag
     2041 cgcggtgtag accatcttgt cgaccggcac gtcgatctcg ttggcgcaga ggcgttgcag
     2101 tacggcgagc gcgtcgcgtc cctgcagcag gagcttcgag aacgaggtct ggtcgtagag
     2161 ggcgaccgct tcgcgcgtgg cgcgctgctc ctcgatcatc cacggcagcc attcgggctt
     2221 gccgagcgtc ggcgctgccg ggggcgcgcc tgacggtacg aagtagttgg cacgctccca
     2281 gccgttcttg ctgccgaagg cggcgccgcg cgcgttgagc aggtcgtaga gcggcgaggt
     2341 gcgcaagggc cgtgcggtct cgagttcctg gcgcggccag cgcatcgcgt aatgcaggcc
     2401 gagcgtctcg ccggtgcggg cggcgagggc cttgcgattg gccatgaagg gaccgaagcg
     2461 gcggatgtcc acgtcccaca ggtccgacgg cgcctcgccg ccgacgatcc attcggcgat
     2521 cagtttgccg gctccgcccg aattggcgat gccggccgaa ttgaatcccg cggcgacgaa
     2581 gcagttgcgc agttcggggg cttcgccgag gatgaagttg ccgtcgggcg tgaagctctc
     2641 cggcccgttc agcagcatct tgatcttcgc ggtctcgagg cagggcgtgc ggtggatcgc
     2701 gttggtcatc aggatctcga actggttcca gtcctcgccg agcagctcga actggaaggt
     2761 cgaggggatc gggtccatcc gccacggctt ggcttgcggc tcgaagccgc ccatcacgag
     2821 gccgccgact tcctccttgt agtagatgca gccgtccgga tcgcgcatca ccggcagcat
     2881 cgggtgcacg ccgtcgatgc ggtccgtgac gatgtagaag tgctcggccg aatagagcgg
     2941 cacgttgact ccggcgaggc gtccgaactg gcgcgcccac tgtccggcgc agttgacgag
     3001 cacctcgcag gccacgtcat gcgtctcgcc atcgacgcgc gtgcgcacgc cggtcgcgcg
     3061 gccgccctgc tgcagcacgc ccgtcacctc gacgccttcg acgatgcgca caccacggtt
     3121 gcgggcgccc ttggcgagcg acatcgtcag atcggcgggg ttcgccttgc cgtcgcccgg
     3181 aatccagatc gcgcctgcga ggtcgtcggt gcgcagcaag ggatagaggt cgccggcctg
     3241 gcgcggcgtg atgatctcga cctcgacgcc gaagctgcgc gccagcgaga cctgcttctt
     3301 caggctccgc atgcgctccg gcgtgcgggc gacgttgacg ctgccgcact gcttccagcc
     3361 cgtggcgagg ccggtttcgg cttcgagctt cgcgtagagc tcgatgccgt acttgctcat
     3421 cgccgtcatg ttgcgattcg ggcgcatctg gccgaccagg ccggcggcgt gccaggtggt
     3481 gccgcaggtc aggcgcccct gctcgagcag cagcacgtcg gtctggccca tcaggctcag
     3541 gtggtaggcg gtcgagcatc cggcgatgcc gccgccgacg atcacgatgc gggcttgggt
     3601 cggcaggtcc atgggatgcc cttcgcgtca gccgaatcgc agcgccatca cgccgcccac
     3661 gatgacgccg gttccggccg cgcgctgcag tccgaagcgc tccttcagca gcaccgtacc
     3721 gagcagcgcg gcgaacagca ccgatgtttc gcgcagcgcg gcgacggaag cgaccggtgc
     3781 ccgggtcatc gcccagagcg cgatcgcgta cgagccgatc gaggcgccgc cgccgagcag
     3841 cgcgaccggc cagcggccgc gggcgtagcg cgcgacctcg gcccgcgact cggcgcttcg
     3901 gcgcagccac acgcagaggg gataggtgat gccgtcgagc acgaacagca ccgtcacgta
     3961 gcgcagcgcg ttgcccgagg tgcgcacgcc gagcccgtcg acgacggtgt agaccgcgat
     4021 gatcgcagcg ttcgcgaacg cgaaggcgag ggccttgcga tggtgcaggg cctcgccggg
     4081 gtgggcgagg ccgacgaggg cgactccggc ggtgatgccg acgatgccga gccaggcgac
     4141 cgcggaaggc gattcaccga tgagcgtcgt gctggcgagc gcgaccagca aaggcgcgca
     4201 accgcgcatg atcgggtagg tgaggcctag atcgccgtgc cggtaggcgc cgaccagcgc
     4261 gatgtagtag ccgacgtgga ccaccagcga ggccgcgatg tagggccagg cgccgcgcgg
     4321 cggcaagccg acccagagca tcagcggcag cgccagcagt gcggcgagag agtgcacgag
     4381 cgcggtgtcc accgccttgt cgccgctcga cttgatcagc gcgttccacg ccgcatgcag
     4441 gagcgcgccg cacagcacgg cgagcacgac cggccaggtc aatggggcac ccccgcgctg
     4501 cgcgcagtcc cgccgagcgg gagcgagcca tccttcggac ggccgggcgg atggctcatg
     4561 cggccagggg cagcgcgcag cgcgcggcgc gctcgaggaa atgggcgagc ggcggcgtcg
     4621 ccagaccggc ctgcttggcg aggtcgtccc actgccgcag cagcaccgcg tcgcgcgcgc
     4681 cgggca
//
LOCUS       DASVHM010000213         1716 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1314823, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000213 DASVHM010000000
VERSION     DASVHM010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1716
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1314823"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..971)
                     /locus_tag="VF308_04180"
     CDS             complement(<1..971)
                     /locus_tag="VF308_04180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015064546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX7435879.1"
                     /translation="MRIHHLIGGRPVESARYFETVDPATQEVLAEVAQGGAAEVDAAV
                     AAAKAAFPAWAARPAPERARLMNRLADLITQHVPDLSETETRDTGQVIAQTRKQLVPR
                     AADNFRYFAEMCVRVDGHTYPTVSHLNYTLFQPVGVCALVSPWNVPFMTATWKVAPPL
                     AFGNTAVLKMSELSPLSAARLGELALEAGIPAGVLNVVHGYGSEAGEPLVAHPDVRAI
                     SFTGSTATGNRIVKAAGMKKFSMELGGKSPFVIFNDARLERALDAAVFMIFSNNGERC
                     TAGSRILVQRSIYADFVARFTERARRISVGDPLDEKTIVGPMISQAHL"
     gene            complement(1007..1702)
                     /locus_tag="VF308_04185"
     CDS             complement(1007..1702)
                     /locus_tag="VF308_04185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEX7435880.1"
                     /translation="MRLADGRVVAETDVVWLPPFEPGTVIALGLNYADHAKDLAFSAQ
                     DEPLVFLKGPGTLIGHRGQTRRPADATFMHYECELAVVIGRTAKRVKRAEAMGHVAGY
                     TVANDYAIRDYLENWYRPNLRVKNRDTCTVLGPWLVDAGDVGAAPQLELRTLVNGVVT
                     QHGNTRDLIFDIPFLIEYLSGFMTLGAGDVILTGTPEGVVDVKAGDEVVCEIDGIGRL
                     VNTIVGDAVFGRA"
BASE COUNT          269 a          538 c          630 g          279 t
ORIGIN      
        1 agatgggcct ggctgatcat cgggccgacg atggtcttct cgtcgagcgg gtcgccgacg
       61 ctgatgcgcc gggcgcgctc ggtgaagcgg gcgacgaagt cggcatagat cgagcgttgc
      121 acgaggatcc gcgagccggc ggtgcagcgt tcgccgttgt tggagaagat catgaagacg
      181 gcggcatcga gcgcgcgctc gagccgggca tcgttgaaga tcacgaacgg gctcttgccg
      241 ccgagctcca tcgagaactt cttcatgccg gccgccttga cgatgcggtt tccggtcgcg
      301 gtcgacccgg tgaaggaaat ggcgcgcacg tcgggatggg cgaccagcgg ctcgccggct
      361 tcgctgccgt agccatgcac gacgttgagg acgcccgccg ggatgccggc ctcgagagcg
      421 agctcgccca ggcgcgcggc gctcaacggc gagagctcgc tcatcttgag caccgccgtg
      481 ttgccgaagg cgagcggcgg ggcgaccttc caggtggccg tcatgaaggg cacgttccac
      541 ggactcacca gcgcgcacac gcccaccggc tgaaagagcg tgtagttgag gtggctcacg
      601 gtgggatagg tgtggccgtc gacgcgcacg cacatctcgg cgaagtagcg aaagttgtcg
      661 gcggcgcgag ggacgagttg cttgcgggtc tgggcgatga cctggccggt gtcgcgcgtc
      721 tcggtctcgg agaggtcggg cacgtgttgg gtgatcaggt cggcgagccg gttcatcagc
      781 cgggcgcgtt cgggtgcggg gcgcgcggcc caggccggaa aggcggcctt ggcggcggcc
      841 accgcagcat cgacttcggc ggccccgcct tgcgccactt cggcaaggac ttcctgcgtc
      901 gccggatcga cagtctcgaa ataccgggca ctttcgacgg gacgcccgcc gatcaggtga
      961 tggatgcgca tgcggggatt ctccgttcag ggcctgttcg cgcaggtcag gcgcgcccga
     1021 acacggcgtc gccgacgatg gtgttgacga gacggccgat gccatcgatc tcgcacacga
     1081 cctcgtcgcc ggctttaacg tcgaccacgc cttcgggcgt gcccgtgagg atcacgtcgc
     1141 cggcgccaag cgtcatgaag ccgctcaggt attcgatcag gaaggggatg tcgaagatca
     1201 ggtcgcgcgt attgccgtgc tgcgtgacga cgccgttgac gagcgtgcgc agctcgagct
     1261 gcggcgcagc gccgacatcg ccggcgtcga cgagccatgg cccgagcacc gtgcaggtgt
     1321 cgcggttctt cactcgcagg ttgggccggt accagttctc gaggtagtcg cggatcgcat
     1381 aatcgttggc gaccgtgtag ccggcaacgt gccccatcgc ctcggcgcgc ttcacgcgct
     1441 tcgccgtccg gccaatgacg accgcgagct cgcactcgta gtgcatgaag gtcgcatcgg
     1501 cgggccggcg ggtctggcca cgatggccga tcagggtgcc cggccccttc aggaagacga
     1561 gcggctcgtc ctgcgcactg aaggcgaggt ccttcgcatg gtcggcatag ttgaggccga
     1621 gggcgatcac cgtgcccggc tcgaacggcg gcagccagac gacatcggtc tcggcgacga
     1681 cgcggccgtc ggcgaggcgg atcgaatcgg cgccgg
//
LOCUS       DASVHM010000214         3314 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_158983, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000214 DASVHM010000000
VERSION     DASVHM010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3314
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158983"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2303)
                     /gene="secA"
                     /locus_tag="VF308_04190"
     CDS             complement(<1..2303)
                     /gene="secA"
                     /locus_tag="VF308_04190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEX7435881.1"
                     /translation="MLPNILTSIFGSRNDRLLKLYRGVVTKVNAFETKFEALGDAELQ
                     AKTAEFRQRHANGESLDQLLPEAFAVVREGSKRTLKMRHFDVQLIGGMALHDGKIGEM
                     RTGEGKTLMATLPVYLNSLTGKGVHVVTVNDYLARRDAEWMGRLYTFLGLSVGVNTPQ
                     MSREEKQAAYAADVTYGTNNEFGFDYLRDNMVQDTADRVARGLAYAIVDEVDSILIDE
                     ARTPLIISGQAEDHTEMYVRINAVVPKLKKQIGELDLRTGEGVIEPGDFTVDEKTHQV
                     FLTEEGHENAERLLGEAGLLAEGASLYDPANITLMHHVYAALRAKHLYNRDQHYVVQD
                     GEVVIVDEFTGRLMTGRRWSDGLHQAVEAKEGVQIQSENQTLASITFQDYFRMYGKLA
                     GMTGTADTEAYEFQEIYGLETVVIPPNMPTIRKDELDLVYKTSREKFEAVIEDIRDCH
                     QRGQPVLVGTTSIENSELISGMLQKTKLPHQVLNAKQHAMEAGIVAQAGRPGVITIAT
                     NMAGRGTDIVLGGNVENQIKLIDADDTIPEDEKKRRAQQLHDEWQSLHDKVKAEGGLR
                     IIATERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLMRIFAGDRVRAIMERLKMP
                     DGEAIEARIVTRSIEGAQRKVEARNFDVRKQLLEYDDVANDQRKVIYQQRNDILEAQS
                     LAAQIASLREGTMNDVVRTFVPVDSVEEQWDLASLEKVLREEWQLDVPLKAEVEKSAS
                     ISDEDIVDLVKKAADAAFEAKVERVGL"
     gene            2665..2988
                     /locus_tag="VF308_04195"
     CDS             2665..2988
                     /locus_tag="VF308_04195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435882.1"
                     /translation="MSPKPPPITPSALPIGVALQGSAPLVRLREALRDSNARFEAILP
                     ALPRPLLTHVKPGPVDAEGWSLLAANASVAAKLRQLRPRLEELLQDGGWPVSTVRIKV
                     MVPDQ"
BASE COUNT          476 a         1078 c         1107 g          653 t
ORIGIN      
        1 tcgaggccga cgcgctcgac cttggcctcg aaggccgcat cggccgcctt cttcaccagg
       61 tcgacgatgt cctcgtcgga gatggaggcg ctcttctcga cttcggcctt gagcggcacg
      121 tcgagctgcc attcctcgcg cagcaccttt tcgaggctgg caaggtccca ctgctcctcg
      181 acgctgtcga ccggaacgaa ggtgcgcacc acgtcgttca tggtgccctc gcgcaggctc
      241 gcgatctgcg cggcgaggct ctgcgcctcg aggatgtcgt tgcgctgctg gtagatgacc
      301 ttgcgctgat cgttggcgac gtcgtcgtat tcgagcaatt gcttgcgcac gtcgaagttg
      361 cgcgcctcga ccttgcgctg tgcgccctcg atcgagcggg tgacgatgcg ggcctcgatg
      421 gcctcgccat cgggcatctt cagccgttcc atgatcgcgc gcacacgatc gcccgcgaag
      481 atgcgcatca gcgagtcatc gagcgacagg tagaagcgcg acgaccccgg gtcgccctgg
      541 cgcccggagc ggccgcgcag ctggttgtcg atgcggcgcg actcgtggcg ttcggtggcg
      601 atgatgcgca gcccgccctc ggccttgacc ttgtcgtgca ggctctgcca ctcgtcgtgc
      661 agctgctggg cgcggcgctt cttctcgtct tcgggaatcg tgtcgtcggc gtcgatcagc
      721 ttgatctggt tctcgacgtt gccgccgagc acgatgtcgg taccgcggcc ggccatgttg
      781 gtggcgatcg tgatcacgcc cggccgcccg gcctgcgcga cgatgccggc ttccatcgca
      841 tgctgcttgg cgttgagcac ctggtgcggg agcttcgtct tctgcagcat cccggagatg
      901 agctccgagt tctcgatcga ggtggtgccg acgagcaccg gctggcctcg ctggtggcag
      961 tcgcggatgt cctcgatgac ggcctcgaac ttctcgcggc tggtcttgta gacgaggtcg
     1021 agttcatcct tgcggatcgt cggcatgttg ggcgggatca ccaccgtctc gaggccgtag
     1081 atctcctgga actcgtaggc ctcggtgtcg gccgtgccgg tcatgccggc gagcttgccg
     1141 tacatgcgga agtagtcctg gaaggtgatc gaggcgaggg tctggttctc gctctggatc
     1201 tgcacgcctt ccttggcctc gacggcctgg tgcaggccgt cggaccagcg cctgccggtc
     1261 atgaggcgcc cggtgaattc gtcgacgatc acgacctcgc cgtcctgcac cacgtagtgc
     1321 tggtcgcggt tgtagaggtg cttggcgcgc agcgccgcgt acacgtggtg catcagcgtg
     1381 atgttggccg ggtcgtagag gctcgcgcct tcggccagca gaccggcctc gccgagcagg
     1441 cgctcggcgt tctcgtggcc ctcttcggtc aggaagacct ggtgcgtctt ctcgtcgacc
     1501 gtgaagtcgc ccggctcgat cacgccctcg ccggtgcgca ggtcgagttc gccgatctgc
     1561 ttcttcagct tgggcacgac ggcgttgatg cgcacgtaca tctcggtgtg gtcttcggcc
     1621 tgcccgctga tgatgagcgg cgtgcgcgcc tcgtcgatga ggatcgaatc gacctcgtcg
     1681 acgatcgcat acgcgagacc gcgcgcaacg cgatcggcgg tgtcctgcac catgttgtcg
     1741 cgcaggtagt cgaagccgaa ctcgttgttg gtgccgtagg tcacgtcggc cgcgtaggcg
     1801 gcctgcttct cctcgcgcga catctgcggc gtgttcacgc cgaccgaaag gccgaggaat
     1861 gtgtagagac gccccatcca ctcggcgtcg cgccgggcga ggtagtcgtt gaccgtgacg
     1921 acgtgcacgc ccttgccggt gagggagttg agatagaccg gcaaggtcgc catcagcgtc
     1981 ttgccttcgc cggtgcgcat ctcgccgatc ttgccgtcgt gcaacgccat gccgccgatc
     2041 agctgcacgt cgaagtggcg catcttcagc gtgcgcttgc tgccctcgcg gaccaccgcg
     2101 aaagcttcgg gcaggagctg gtcgaggctt tcgccgttgg cgtggcgctg gcggaattcg
     2161 gccgtcttgg cctgcagctc ggcatcgccg agcgcttcga atttcgtttc gaacgcgttg
     2221 accttggtca cgacgccgcg gtagagcttc agcaaccggt cgttgcggct gccgaaaatc
     2281 gaagtgagaa tgttgggcaa catgcggcgt cggtggaggt tgatgcgaga ggaagaccgg
     2341 tgcgccggcc cggcacgcga aacgacgcgc gagcggcagc ctcgtcgagg tgcgtcgtct
     2401 gccgcaaaag caaggcgctg cgcggccgca aaagccttgg agtttaacag ttgcctcgct
     2461 gacgccgggc tacgacgccc ggggcagccc ttgggcgccg gggcgccagg cccggccctt
     2521 cgggtgatct cagcaaacag ccgccggccg cgttgcaaat gctcgccgta gacacagcta
     2581 cggctgcact ttgcgccttg cgggcggctg tttgctgagt cacgtgagcc ctcccatagc
     2641 gtgaacaggc cctagactct ccccgtgagc ccgaagccgc ctccgatcac gcccagcgca
     2701 ctgcccatcg gcgttgccct gcagggcagt gccccgttgg tcaggctgcg tgaagcgctg
     2761 cgcgattcga atgcccgttt cgaggcgatc ctgccggcgc tgccgcgccc cctgctcacg
     2821 catgtgaagc ccgggccggt cgatgcggaa ggctggtcgc tgctcgccgc gaacgcttcg
     2881 gtggcggcga aactccgtca gcttcgaccg cgcctcgaag agctgctgca agacggcggc
     2941 tggccggtca gcacagtgcg gatcaaggtg atggtgcccg accagtagcc cccgtggaca
     3001 agaccggtcg atgatgccgg ctgtccgaat cgaacggacg accttcacgg cgcgctccac
     3061 ggtgcgcatg ctcaccgtga cactgggttc gcgctgcagc tcttggcgct cgacgccgtg
     3121 gtgccggccg aatcgctcgg ccagccaatc ctgctagggc gcgatcttta cgccttcttg
     3181 acgcgtaagg tcctacgctt gacgtctaac tggggtggag caaccatgcg ggcttcttct
     3241 tcctctcacg caccagacta actttccgga tttctgggtg agccacggga caacgtcctt
     3301 gcgccgaacc ctcg
//
LOCUS       DASVHM010000215         2531 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1097538, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000215 DASVHM010000000
VERSION     DASVHM010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2531
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1097538"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2038)
                     /locus_tag="VF308_04200"
     CDS             complement(<1..2038)
                     /locus_tag="VF308_04200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEX7435883.1"
                     /translation="MQATTAQASSVAAASTRAAARPAPAASAYQGYQILRRNGAVVSF
                     EPNKVAVALMKAFLAVHGTQGAASASVRETVDGLTESVVRGLLRSRPGGGTFHIEDVQ
                     DQVELGLMRGGHHEVARAYVLYRERRAQERAKQGPAPVVAAPALMVTDRGVRVPFDSA
                     RMQTLIESACAGLGADVRPEPILTETKRNLYDGVPIDEVHKAAILAARTLIEKDPGYT
                     RATARLLLHTIRREILGEELLQSDMETRYAEYFPQFVKKGVAAELLDEKLLHYDLARL
                     GAALKADRDLQFDYLGLQTLYDRYFLHIDEARIELPQAFFMRVAMGLALNEIDREERA
                     IEFYEVLSTFDFMSSTPTLFNAGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSKFA
                     GGLGNDWTNVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW
                     HLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLLMKRVMEGGDWTLFSPSTCPDLHDK
                     FGRAFEGAYTAYEDKAARGEIKLFKKVKAADLWRRMLTMLFETGHPWITFKDACNVRS
                     PQQHVGVVHSSNLCTEITLNTSPTEIAVCNLGSVNLAQHIADGKLDQTKLKKTVATAL
                     RMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALYEIGVPYASEAAVSFAD"
     gene            complement(2323..>2531)
                     /locus_tag="VF308_04205"
     CDS             complement(2323..>2531)
                     /locus_tag="VF308_04205"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEX7435884.1"
                     /translation="EGLEGEAFDDAQYPALAGLLGSLALRYPIAAVAGHEHVAPGRKN
                     DPGAGFEWSRLRRLAPSAKLAFAA"
BASE COUNT          372 a          812 c          907 g          440 t
ORIGIN      
        1 ggtcggcgaa gctcaccgcc gcctccgagg catagggcac gccgatctcg tagagcgcgt
       61 cctggaagcc catgatgccc aggcccaccg ggcgatggcg caggttcgag tcgcgcgcct
      121 tcttgaccgc gtagtagttg atgtcgatga cgttgtcgag catccgcagc gccgtcgcga
      181 ccgtcttctt gagcttggtc tggtcgagct tgccgtcggc gatgtgctgg gccaggttga
      241 ccgagccgag gttgcagacc gcgatctcgg tcgggctggt gttgagggtg atctcggtgc
      301 acaggttgct cgagtggacg acgccgacgt gctgctgcgg cgagcgcacg ttgcaggcgt
      361 ccttgaacgt gatccagggg tggccggtct cgaacagcat ggtgagcatg cgccgccaca
      421 ggtcggccgc cttcaccttc ttgaacagct tgatctcgcc gcgcgccgcc ttgtcctcgt
      481 acgccgtgta ggcgccctcg aaggcgcggc cgaacttgtc gtgcaggtcg gggcaggtcg
      541 aaggcgagaa gagcgtccag tcgccgcctt ccatcacccg cttcatcagc aggtcgggca
      601 cccagttggc ggtgttcatg tcgtgggtgc gccggcgatc gtcgccggtg ttcttgcgca
      661 gctcgaggaa ctcctcgatg tcgaggtgcc agctttccag gtaggcgcag acggcgcctt
      721 tcctcttgcc gccctggttg accgcgaccg cggtgtcgtt gacgaccttc aggaacggca
      781 cgacgccctg gctcttgccg ttggtgccct tgatgtagct gccgagcgcg cgcacgttgg
      841 tccagtcgtt gccgaggccg ccggcgaact tcgagagcag cgcgttttcc ttgagcgcct
      901 cgtagatgcc gtcgaggtcg tcggagacgg tcgtcaggta gcagctcgac agctgcgagc
      961 ggcgcgttcc ggcgttgaag agcgtcggcg tcgagctcat gaagtcgaag gtcgagagca
     1021 cctcgtagaa ctcgatcgcg cgctcctcgc ggtcgatctc gttcagcgcc aggcccatcg
     1081 ccacgcgcat gaagaacgcc tgcggcagct cgatgcgcgc ttcgtcgatg tgcaggaagt
     1141 agcggtcgta aagggtctgc aggccgaggt agtcgaactg caggtcgcgg tcggccttga
     1201 gcgcggcgcc gaggcgggcg aggtcgtagt ggaggagctt ctcgtcgagc agctcggcgg
     1261 cgacgccctt cttgacgaac tgggggaagt actcggcgta gcgcgtctcc atgtccgact
     1321 ggagcagctc ctcgccgagg atctcgcgcc ggatcgtgtg caggaggagg cgggccgtcg
     1381 cccgcgtgta accgggatcc ttctcgatca gggtgcgcgc ggccaggatc gccgccttgt
     1441 gcacttcgtc gatcggcacg ccgtcgtaga ggttgcgctt ggtctcggtc aggatcggct
     1501 cgggtcgcac gtcggcgccg aggccggcgc aggccgactc gatcagcgtc tgcatgcgcg
     1561 cggaatcgaa cggcacccga acgccgcggt cggtgaccat caacgccggc gcggcgacga
     1621 ccggtgccgg gccctgcttg gcgcgctcct gggcgcgccg ctcgcggtag agcacgtagg
     1681 cgcgggcgac ctcgtggtgg ccgccgcgca tcaggccgag ctcgacctga tcctgaacgt
     1741 cctcgatgtg gaacgtgccg ccgcccggtc gcgatcgcag caggccgcgc acgaccgatt
     1801 cggtcaggcc gtcgacggtc tcgcgcacgc tcgccgaggc cgcgccctgg gtgccgtgga
     1861 cggcgagaaa cgccttcatc agcgcgaccg cgaccttgtt cggctcgaac gagacgacgg
     1921 cgccgttgcg gcgaagaatc tggtaaccct ggtaggccga cgcggccggg gcgggccggg
     1981 ccgcggcccg ggtggatgcc gcggcgacgg agctcgcctg ggcggtggtt gcttgcatgg
     2041 agtcccctgt ggagccctgg cttctcggtg ctgccaggac gctttgtgtg atgcgccgga
     2101 gccctgccga cgttcgaaaa aactcgccgg ggacgcgctt cgcgacgctt ggccgcgacc
     2161 ccctcgaggc aaattcagga taccgcgagg aacactatat ctggggtctc gacgcgcaac
     2221 aaccactacc tatagcgtct aacccgtaga tttgtcacga accgattgtc gccgatttcg
     2281 tcgtcaagcg ggccgaaacg gcctctgcgg gaaagcggtc gatcaggccg cgaaggcgag
     2341 cttcgcggaa ggcgccaggc ggcgcaggcg cgaccactcg aagccggcgc cgggatcgtt
     2401 cttgcggccc ggcgcgacgt gctcgtggcc ggccacggcg gcgatcggat agcgcagcgc
     2461 gaggctgccg aggaggccgg cgagcgccgg atactgcgcg tcgtcgaagg cctcgccttc
     2521 gagcccctcg a
//
LOCUS       DASVHM010000216         2170 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_15179, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000216 DASVHM010000000
VERSION     DASVHM010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15179"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            28..270
                     /locus_tag="VF308_04210"
     CDS             28..270
                     /locus_tag="VF308_04210"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEX7435885.1"
                     /translation="MEQISAPTRSTAPPASYEAALAELDALVASMEAGQLPLDRMLES
                     YQRGAELLGYCRDRLAAVEQQVRILEDGQLKPWAPA"
     gene            267..1154
                     /locus_tag="VF308_04215"
     CDS             267..1154
                     /locus_tag="VF308_04215"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004337 - geranyltranstransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="farnesyl diphosphate synthase"
                     /protein_id="HEX7435886.1"
                     /translation="MTPAEFDSWAAAEADAVESALHAWVPADAPAGLGLAMRYGVLDG
                     GKRVRPLLVLAAAQAVQGLREAALRAACAVELIHAYSLIHDDMPCMDNDVLRRGKPTV
                     HVQFGVAQAMLAGDAMQALAFEVLTPETGVPPALQARLCSLLARSAGHAGMAGGQAID
                     LASIGLQLDEHALRDMHHRKTGALLQASVLMGTACGSASPGQWAALSDYGDALGLAFQ
                     VVDDILDVTQASATLGKTAGKDLNDNKPTYVTVLGLDAARRHAGELRDKAQAALARSG
                     LPDASCLSLLADRVVEREN"
     gene            1162..>2170
                     /gene="dxs"
                     /locus_tag="VF308_04220"
     CDS             1162..>2170
                     /gene="dxs"
                     /locus_tag="VF308_04220"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEX7435887.1"
                     /translation="MKHTLLESIQVPADVRRLSRVELKQLAVELRDFVVQSVSQTGGH
                     LSSNLGTVELTIALRHVFNTPYDRLVWDVGHQTYPHKVLTGRRERMATLRQLGGISGF
                     PRREESEYDTFGTAHSSTSISAALGMAVAARLKGENRKAVAIIGDGAMSAGMAFEALN
                     NAGVSQTDMLVILNDNDMSISPPVGALNRYLARLMSGKFYAAARDTAKTVLKNAPPLF
                     ELARRFEEHAKGMVVPGTIFEEFGFNYVGPIDGHDLDSLIPTLENLRSLKGPQFLHVV
                     TKKGYGYKLAEADPVLYHGPGKFNPAEGLVAPKTPPKTTFTQVFGQWLCDMAAIDERL
                     VG"
BASE COUNT          348 a          762 c          731 g          329 t
ORIGIN      
        1 tgactacaat gggagtcgcc ttttccgatg gaacaaatct ccgcacccac ccggtcgacc
       61 gctccgcccg ccagctacga ggccgcgctg gccgaactcg acgcgctcgt cgcttcgatg
      121 gaagccgggc agttgccact cgatcgcatg ctcgaaagct accagcgcgg cgccgagttg
      181 ctcggctatt gccgggaccg cctcgcggcg gtcgaacagc aggtcaggat cctggaggat
      241 gggcagctca agccctgggc tccggcatga cgcctgccga gttcgattcc tgggccgcgg
      301 ccgaagccga cgccgtggag tccgccctgc atgcctgggt gcccgcggat gcgccggccg
      361 gcctgggcct ggcgatgcgc tacggcgtgc tcgacggcgg caagcgggtt cggccgcttc
      421 tcgtcctcgc ggccgcgcag gccgtgcaag gcctgcgcga ggcggctctg cgggcggcct
      481 gcgcggtgga gctgatccat gcctattcgc tcatccacga cgacatgccc tgcatggaca
      541 acgacgtcct gcgccgcggc aagccgacgg tgcatgttca gttcggtgtg gcccaggcga
      601 tgctcgccgg cgacgcgatg caggcgctcg cgttcgaggt cctgacgccc gagacggggg
      661 tgccgccggc cctgcaggcg cgtctgtgct cgttgctggc gcgctccgcc ggtcacgccg
      721 gcatggccgg tggccaggcg atcgacctgg cgagcatcgg cttgcagctc gacgaacacg
      781 cgctgcgcga catgcaccat cgcaagaccg gcgcgttgct gcaggcgagc gtgctgatgg
      841 gcacggcctg cgggtcggcg tcaccgggcc agtgggcggc gctgtcggac tatggcgacg
      901 ccctcggcct cgcctttcag gtggtcgacg acattctcga cgtgacccag gcctcggcca
      961 cactcggcaa gaccgcgggc aaggatctga acgacaacaa gccgacctac gtgacggtgc
     1021 tgggtctcga cgcggcgcgg cgccacgccg gcgaactgcg cgacaaggcg caggctgcgc
     1081 tcgcgcgcag cggcctcccc gacgccagct gcctgagtct gctggccgat cgcgtcgtcg
     1141 agcgcgagaa ctgaaaaaga catgaaacac acgctgctcg aatcgatcca ggtccctgcc
     1201 gatgtgcgcc gcctgtcgcg cgtcgagctg aagcaactcg ccgtggagtt gcgcgacttc
     1261 gtggtccaga gcgtttcgca gaccggcggc cacctgtcgt cgaacctcgg cacggtcgag
     1321 ctgacgatcg cgctccgcca tgtgttcaac acgccctacg accggctggt gtgggacgtc
     1381 ggccaccaga cctatccgca caaggtgctg accgggcggc gcgagcggat ggcgacgctg
     1441 cgccagctcg gtggcatctc cggctttccg cggcgcgagg agagcgagta cgacaccttc
     1501 ggcaccgcgc actcgtcgac ctcgatatcg gccgcgctcg gcatggccgt cgcggcgcgc
     1561 ctcaagggcg agaatcgcaa ggcggtcgcc atcatcggcg acggcgcgat gagcgccggc
     1621 atggccttcg aggcgctcaa caacgccggc gtctcgcaga ccgacatgct cgtcatcctc
     1681 aacgacaacg acatgtcgat ctcgccgccg gtcggcgcgc tcaaccgcta cctggctcgc
     1741 ctcatgagcg gcaagttcta cgccgcggcc cgcgacacgg ccaagacggt gctcaagaac
     1801 gcgccgcccc tgttcgagct ggcccggcgc ttcgaggagc acgccaaggg catggtcgtg
     1861 cccggaacga tcttcgagga gttcggcttc aactacgtcg gcccgatcga cggccacgac
     1921 ctcgactcgc tgatccccac gctcgagaac ctgcgcagcc tgaaaggccc gcagttcctg
     1981 cacgtggtga cgaagaaagg ctacggctac aagctcgccg aggccgaccc ggtgctctac
     2041 catggcccgg gcaagttcaa tccggccgaa gggctggtcg cgccgaagac gccgcccaag
     2101 accaccttca cgcaggtctt cggccagtgg ctgtgcgaca tggccgcaat cgacgagcgt
     2161 ctggtcggca
//
LOCUS       DASVHM010000217         1842 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1097812, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000217 DASVHM010000000
VERSION     DASVHM010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1097812"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..548
                     /locus_tag="VF308_04225"
     CDS             <1..548
                     /locus_tag="VF308_04225"
                     /inference="COORDINATES: protein motif:HMM:TIGR00369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HEX7435888.1"
                     /translation="HRDAVGVGRRARARTPERIAAAPVTARAAAAVAATATAALATPL
                     DADGWRDRIAGLAANDGLCTTLGITFRSGGPGRAEVAMTVDARHLNFNGVGHGGAIFS
                     LADSAFGLAANSHGPLAAGIDAHITFQAGVVTGDRLVARATEAHRSRRVAVYRIDVVR
                     LDPGGGESAISSFTGTVYIKG"
     gene            688..>1842
                     /locus_tag="VF308_04230"
     CDS             688..>1842
                     /locus_tag="VF308_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007875058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7435889.1"
                     /translation="MPSTFPGLLLDHAARRPSAPALREKEFGIWQTLTWGELAVLVRA
                     IACGLVEAGLARGQHLVVIGENRPRLYASMLAAQALGAIPVPLYQDAAAAEFVFPMGN
                     AEVGFAIVEDQEQVDKMLEVRASCPQLARIWFDDPRGLRHYGETGLAPLDALIAAGRA
                     YDAQHPGFFAAEVAKTRPADVAAMFYTSGTTGHPKGVVHTHETLIDRAAAGARFDKLT
                     ADDEVLAYLPPAWIGQNIFSYAQWLVCGYVVNCPESASTVTIDLKEIGPTYYFAPPRV
                     FEGLLTSVMIRMEDAGRIKRWLFDRAMALARRIGPARMDGRPVGAIDGLRYALGDLLI
                     YAPLRNTLGFSRVRVAYTAGEAIGPDLFTFYRSIGINLKQLYGSTETAVFV"
BASE COUNT          280 a          676 c          596 g          290 t
ORIGIN      
        1 cgcaccgcga cgcggtcggc gtcggccgac gcgctcgggc acggacgccg gagcgcatcg
       61 ccgcggcacc ggtcacggcg cgggccgcag cagcggtcgc agcgacggcc acggcagccc
      121 tcgcgacgcc gctcgacgcc gacggctggc gcgaccggat cgccggcctg gccgcgaacg
      181 acggcttgtg cacgacgctc ggaatcacct tccgctcggg cggcccgggc cgcgccgaag
      241 tcgccatgac ggtcgacgcg cgccatctca acttcaacgg cgtcggccac ggcggcgcga
      301 tcttcagcct ggccgactcc gctttcggcc tcgccgccaa ctcgcacggg ccgctcgcgg
      361 ccggcatcga cgcgcacatc accttccagg ccggcgtcgt caccggcgat cgcctcgtcg
      421 cgcgagcgac cgaagcgcac cgctcgcggc gcgtcgccgt ctatcgcatc gatgtcgttc
      481 gcctcgaccc cgggggcggc gaaagcgcca tctccagctt caccggaacg gtctacatca
      541 agggctgacc gaggaaggga tacacccgag ggtgttctcc cgtagattgt cgccagaacg
      601 acagaacggc gtcaaaatct tcctagagtc gagactgacg cccagcgcgc ggtgggtgct
      661 tgcctgcgcc tctttcgaaa gccgatcgtg ccctcgacat ttcccggcct cttgctcgat
      721 cacgcggcgc ggcggccgag cgcgccggca ctgcgtgaaa aagagttcgg catctggcag
      781 acgctcacct ggggcgaact ggcggtgctc gttcgcgcca tcgcctgcgg cctcgtcgaa
      841 gcggggctcg cgcgcggcca gcatctggtc gtcatcggcg aaaaccggcc tcgcctctac
      901 gcgtcgatgc ttgccgcaca ggcgctgggc gcgatcccgg tgccgctgta ccaggacgcc
      961 gccgctgccg aattcgtctt tccgatgggc aacgccgagg tcggctttgc gattgtcgaa
     1021 gaccaggagc aggtcgacaa gatgctcgag gtgcgtgcct catgcccgca gttggctcgg
     1081 atctggttcg acgacccgcg cgggctgcgc cactacggcg agaccggcct cgcgccgctc
     1141 gacgcgctga tcgcagctgg gcgagcttac gacgcgcagc atcccggctt cttcgctgcc
     1201 gaggtcgcca agacgcggcc tgcggacgtc gctgcgatgt tctacacctc gggaacgacg
     1261 ggccacccga aaggtgtcgt gcacacgcac gagacgctga tcgatcgcgc cgccgctggt
     1321 gcccgcttcg acaagctcac ggccgacgac gaggtgctcg cctacctgcc gccagcctgg
     1381 atcgggcaga acatcttctc gtatgcgcaa tggctcgtct gcggctacgt cgtcaactgc
     1441 cccgagtcgg cgagcacggt gacgatcgac ctgaaggaga tcgggccgac ctattacttc
     1501 gcgccgccgc gcgtcttcga aggcctgctc acgagcgtga tgattcgcat ggaagacgcc
     1561 gggcgcatca agcgctggct cttcgaccgc gccatggccc tggcccgccg catcggcccg
     1621 gcgcgcatgg acggcaggcc cgtcggcgcg atcgatggcc tgcgctacgc actcggcgac
     1681 ctcctcatct acgcgccgtt gcgcaacaca ctcggctttt cccgagtgcg cgtcgcctac
     1741 accgcgggcg aggcgatcgg tcccgacctc ttcaccttct accgctcgat cggcatcaat
     1801 ctcaagcagc tctacggctc gaccgagacc gccgtcttcg tc
//
LOCUS       DASVHM010000218         3643 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_15233, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000218 DASVHM010000000
VERSION     DASVHM010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3643
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15233"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..417
                     /locus_tag="VF308_04235"
     CDS             <1..417
                     /locus_tag="VF308_04235"
                     /EC_number="2.1.3.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEX7435890.1"
                     /translation="AIEQKTAFISFTATGGARMQEGLLSLMQMAKTNAALTRLARARL
                     PYISVLTDPTMGGVSASFAFVGDVVMAEPKALIGFAGPRVIENTVREKLPEGFQRSEF
                     LLQTGAIDMIVDRRELRPSIARAIAMLQRLSSDAVA"
     gene            599..1222
                     /locus_tag="VF308_04240"
     CDS             599..1222
                     /locus_tag="VF308_04240"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX7435891.1"
                     /translation="MVAAAAPTVTLTGWTFGSGNAVDVNAPLYSGQAGGYTGALSGFG
                     APFDTASFQAYCVELTQQFSFGSGGMTDYSIVPGATDPQWLNPAASANRIGQLITYVN
                     ANPTAVDTAAESTSLQLAIWNSIYDTDNTLTGGTFTDTSGYKTYANTLLANSIGTVSN
                     LNVYVLTNSQKQDFLVTRPVPEPSTYALMMAGLMGMSFTGRRRRVPH"
     gene            1346..2692
                     /gene="folC"
                     /locus_tag="VF308_04245"
     CDS             1346..2692
                     /gene="folC"
                     /locus_tag="VF308_04245"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013518382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEX7435892.1"
                     /translation="MSSPTTLEEWLARCERMHPIEIDLTLDRVLRVKERLGLGFSAPV
                     VVVAGTNGKGSTCAMLEAIALQAGYRVGLYSKPHLVHFEERCRVNGRMATPAELLPHF
                     EAVEAARGEVSLTYFEFTLLAIARLLASVPLDLVILEVGLGGRFDAVNAFDNDCAVIT
                     SIDVDHVEFLGPDRESIGLEKAGVMRPGRPVIVSDPMPPQSVLDAAVRIGADLWRFGR
                     DFNYSGDTLQWNWAGRALRFNALGYPALRGANQLLNASGVLAAFEALRERLPITAQAV
                     RTGFALVELPGRFQIVPGQPTLVLDVAHNPHAVAALAQNLDRMGFYPRTHAVFGAMRD
                     KDIGAILTRMAPLVDHWYFTDLPGARAAAAADLARVHARLDAKGPGPVSVSCHPGPAA
                     ALAAAVEGSDPADRIVIFGSFHTVGGVLEAGLPRLSGRHAARPARSAESAPGVNGA"
     gene            2747..3553
                     /locus_tag="VF308_04250"
     CDS             2747..3553
                     /locus_tag="VF308_04250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEX7435893.1"
                     /translation="MALLSIFKRTNDSPAASDTGDAVQQARTRARRRLIGAVVLLVVG
                     VIGFPLVFETRPRPIPVDIPIEIPKKDGAPALVMPPARAPGSVVAPASAIAEAPAPND
                     EAIITESHADAGREIAARPNAAQASAPERVASRPVSRSVAVPATESARKPAAASAAAA
                     TVEVPPKPAAAPAPAPDSARAKALLEGKPAADGGRFVVQVGAFAEVESARETRTKVEK
                     LGLKTYTQVAQTPSGSRIRVRIGPFGTRAEADAALAKARAAGLSAVVLTL"
BASE COUNT          555 a         1270 c         1231 g          587 t
ORIGIN      
        1 gcgatcgagc agaagacggc cttcatcagc ttcacggcga ccggcggcgc gcgcatgcag
       61 gaaggcctgc tcagcctgat gcagatggcc aagaccaacg ccgcgctgac gcggctcgcg
      121 agggcgcggc tgccctacat cagcgtgctg accgacccga cgatgggcgg cgtctcggcg
      181 agcttcgcgt tcgtcggcga cgtggtcatg gccgagccga aggcgctgat cgggttcgcc
      241 ggtccgcggg tgatcgagaa caccgtgcgc gaaaagctgc ccgagggctt ccagcgctcg
      301 gagttcttgt tacagaccgg tgcgatcgac atgatcgtcg accggcgcga gttgcggcct
      361 tcgatcgccc gcgcgatcgc gatgctgcag aggctcagtt ccgacgcggt cgcgtagaag
      421 cctgaccgtc tgtccggttt ttgggcgaac cccgacacgc ggcgttggcg ccccgcgaga
      481 ctcccgatag cattttggac atcgctcggc aaagaccgaa gtctgaaaat cattgggaac
      541 caaaatgcat acacgatgga tacggatagc cgcagcggct cttctcggag gaaccgcgat
      601 ggtggctgcg gcagcgccca cggtcactct cacgggctgg accttcggca gcggcaacgc
      661 cgttgacgtc aacgccccgc tctacagcgg tcaggcgggc gggtacaccg gcgcgctgag
      721 cggcttcggc gcgccgttcg acaccgcgtc cttccaagcc tattgcgtcg agctgaccca
      781 gcaattcagc ttcggttcgg gaggcatgac ggactattcg atcgtgcctg gcgctacgga
      841 cccgcaatgg ctgaatcccg cggcgtcggc gaaccggatc ggccaactga tcacctatgt
      901 caatgcgaac ccgaccgcgg tagacaccgc ggcagagtcc acgtcgctgc agctggcgat
      961 ctggaacagc atctacgaca ccgacaacac gctgaccggc ggtaccttca ccgatacgag
     1021 cgggtataag acctatgcga atacgctgct cgccaactcg atcggcaccg tgagcaacct
     1081 gaatgtgtat gtcctcacca atagccagaa acaggatttt ctcgtgacca ggcccgttcc
     1141 cgagccctcg acctacgcgt tgatgatggc cggcctgatg ggcatgagct tcacagggcg
     1201 tcggcgccgc gtcccgcact gagtgcgact cccgtcccct cgaaaggcgg cctcggccgc
     1261 cttttttctt gtttcgaacc cgcgccgcgc gcaaagccgg gtgctcgggg ctctgcgccg
     1321 tgttgcgcag ccttaccatt tgccgatgtc gtctcccacc acgctcgaag agtggctcgc
     1381 gcgctgcgag cgcatgcacc ccatagaaat cgatctgacg ctcgaccgcg tgctgcgcgt
     1441 caaggagcgg ctcgggctcg gcttcagcgc gccggtcgtg gtggtcgccg gcaccaacgg
     1501 caagggctcg acctgcgcga tgctcgaggc catcgccctc caggccggct atcgggtcgg
     1561 tctgtattcg aagccgcacc tcgttcattt cgaggaacgc tgccgcgtca acggccgcat
     1621 ggcgactccc gccgagctgc tgccgcattt cgaggcggtc gaggcggcac gcggcgaggt
     1681 cagcctgacc tacttcgagt ttacgctgct ggccatcgcg cgcttgctgg cgtcggtgcc
     1741 gctcgacctc gtgatcctcg aggtcggcct cggcgggcgc ttcgatgccg tcaatgcctt
     1801 cgacaacgat tgcgctgtca tcaccagcat cgacgtcgac catgtcgagt tcctcggccc
     1861 ggaccgcgag tcgatcgggc tcgagaaggc cggcgtgatg cggccgggaa ggcccgtcat
     1921 cgtcagcgat ccgatgccgc cgcagagtgt gctcgacgca gcggtgcgca tcggcgccga
     1981 cctgtggcgc ttcgggcgcg atttcaacta ctcgggcgac acactgcaat ggaactgggc
     2041 cggccgcgca ctgcgcttca acgccctggg ctatccggca ttgcgcggtg cgaaccagtt
     2101 gctcaacgcc tcgggcgtgc tcgccgcgtt cgaagcgttg cgcgagcgcc tgccgatcac
     2161 ggcacaggcc gtgcgcaccg gcttcgcgct ggtcgaattg cccggacgct tccagatcgt
     2221 tcccggccag ccgacgctgg tcctcgatgt cgcgcacaac ccgcatgcgg tcgcggcgct
     2281 cgcgcagaat ctcgaccgga tgggtttcta tccgcgcacc cacgcggtct tcggcgcgat
     2341 gcgcgacaag gacatcggcg cgatcctcac gcgcatggcg ccactggtcg accattggta
     2401 cttcaccgac ctgccgggag cgcgtgccgc cgccgcggca gacctggcgc gggtgcacgc
     2461 caggctcgac gccaagggcc cggggcccgt ctcggtctcg tgccatccgg gccccgccgc
     2521 ggccctggcc gcggcggtcg agggctcgga ccccgctgat agaatcgtca tcttcggctc
     2581 gttccacacc gttggcggcg tcctggaggc cggtctgccc cgcttgtcgg gcagacatgc
     2641 cgcccgaccc gcgcgctcgg cggagtctgc gccgggcgtc aacggcgcct gatgcgcgaa
     2701 ctggcgctcg ccgccgccgc ccacacctcc tggtagcctg cagcgaatgg ctttgctctc
     2761 gatcttcaag cgcaccaacg attcgcccgc cgcgagcgac accggcgatg cggtgcagca
     2821 ggcgcgcacg cgcgcgcgcc ggcgcctgat cggcgcggtg gtgctgctgg tggtcggcgt
     2881 gatcggtttt ccgcttgtct tcgagactcg gccgcggccg attccggtcg acattccgat
     2941 cgaaattccg aagaaggacg gcgccccggc gttggtgatg ccgcccgcgc gcgcgccggg
     3001 cagcgtcgtg gcgccggcct cggcgattgc ggaagcgcca gcgcccaacg acgaagccat
     3061 catcaccgaa tcgcacgccg atgcgggccg cgagatcgcc gcccgcccga acgcggcgca
     3121 ggccagtgcg cccgagcgcg tggcgtcgcg cccggtgagc cgaagcgtgg ccgtgccggc
     3181 tacagaatcc gcgcgcaagc ccgccgccgc ctctgcagcg gccgcgacgg tcgaggtccc
     3241 gcccaagccc gcagcggcgc cggcgcccgc gccggactcg gcgcgtgcca aggcgctcct
     3301 cgagggcaag ccggcggcgg acggcggacg cttcgtggtg caggtcggtg cgtttgcgga
     3361 agtcgagtcg gcgcgcgaaa cgcggaccaa ggtcgagaag ctcggcctga agacctacac
     3421 ccaggtcgcg caaacgcctt cgggcagccg catccgcgtg cgcatcgggc cgttcgggac
     3481 gcgcgccgag gccgatgcgg cgctcgcgaa ggcccgcgcc gcgggcctca gtgccgtcgt
     3541 gctgacgctg tgaagacgcc gcatgaacct cgacatcggc tgggtcgacg ggggcctgct
     3601 cgcggtgctg gggctgtcgg tcctcgtggg ggcgctgcgc ggg
//
LOCUS       DASVHM010000219         3212 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1169196, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000219 DASVHM010000000
VERSION     DASVHM010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3212
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1169196"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..920
                     /locus_tag="VF308_04255"
     CDS             <1..920
                     /locus_tag="VF308_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019572342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEX7435894.1"
                     /translation="EPFREGYRKTLAGKTVAYVPVALGFDLAQGWLEGLKKELEPLGV
                     KIVVRDPNWNTNAGAQAVTTLISEKPDVIVVHNPDVQTYAKLLQKAEAQGIQVVQINM
                     RSAYASVVYVGADWVEVGEKATTAVVDACKGKSNKVAIVQGALSAAASAYTLKGVENV
                     LGKHPEIKVVSSQAADWDAAKAKGITQTVLKQHPDLCGIVGFWDGMDSGTAAAIKEAG
                     LTGKVFLATSGGGEQKGACEQVKSGAFDLDLSYDVPTQASNMAASIKWLLQNPGKTKD
                     AKGSIYTTLIPITKANAATEGTCWKLGKI"
     gene            1006..3180
                     /locus_tag="VF308_04260"
     CDS             1006..3180
                     /locus_tag="VF308_04260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011811246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEX7435895.1"
                     /translation="MNHTADPPQELASTAAAAPWVDTLTRWRYRYWPDHLLGEILAKR
                     WMETAIPVVVLILVASALSSAIPNFLSAASLADTGRQAGEIGFIVLGMALVMIVGGID
                     LSVGSMFALTNFCALYFMHVLKWPVAGAVVMTLVFGAALGAVNGILVGYFRLRAFLTT
                     LITLIIYRAMYDLLIADYATAIAGGLPDSAAWEFIGSGEWLGVPTVVFAYALVAIFGH
                     IFLTRLRPGWHVIAIGGSRRSAYNTGIAVRRTVAMCYVACGMLSAVGGIFFASRLATA
                     GGDIGVGLEITVLTAAVLGGISLGGGKGSVMKALVGTLIVLLIINGLTTLSLHGGYNR
                     MVLATILLLAAVIDIRWLKNRHRIVNKVYVSPTYHALPPAPSTAPDCGTAWALNDKLR
                     NVKVIGLGRIEGPEDVILDRHDNLYAGSRHGDIIRFFPPDYERMEIYAHIGGTPLGMA
                     FDRHDNLYVCIGGMGLYRVTPERKVEKVTDETNRSYSSVNDDSRLRLADDLDITDDGR
                     IFFSEATVRFEMHEWATDGLEARGNGRIICYDTNTGKTHTVIRDLKFPNGVCIASDGQ
                     SFLFAETWGCSVKRHWFDGPKKGSTEIVLENLPGFPDNINNSSDGHYWMSLVGMRCPA
                     LDLAWKMPGFRRRMAKRVPRDEWLFPNINTGCVLKFNERGEVLETLWDLGGENHPMIT
                     SMREHRGHLYLGGIMNNRVGRYTIPGADPDFVQYGMRWGKAA"
BASE COUNT          567 a         1087 c         1052 g          506 t
ORIGIN      
        1 acgagccgtt tcgcgagggg tatcgcaaga cactggcggg caagaccgtc gcctatgtgc
       61 cggtcgcgct gggcttcgac ctggcgcagg gctggctcga gggcctgaag aaggaactcg
      121 agccgctggg ggtgaagatc gtcgtgcgcg acccgaactg gaacaccaac gccggtgccc
      181 aggccgtcac cacgctgatc agcgagaagc ccgacgtcat cgtcgtgcac aaccccgacg
      241 tgcagaccta cgccaagctg ctgcaaaagg ccgaggcgca gggcatccag gtggtgcaga
      301 tcaacatgcg ctcggcctac gcgtcggtgg tctacgtcgg cgccgactgg gtcgaggtcg
      361 gcgagaaggc gacgaccgcg gtcgtcgatg cctgcaaggg caagtcgaac aaggtcgcga
      421 tcgtgcaggg tgcgctgtcg gcggcggcca gcgcctacac cttgaagggc gtcgagaacg
      481 tgctcggcaa gcatcccgag atcaaggtcg tgtcgagcca ggccgccgac tgggacgccg
      541 ccaaggccaa gggcatcacg cagacggtgc tcaagcagca ccccgacctg tgcggcatcg
      601 tcggcttctg ggacggcatg gactcgggca ccgcggcggc gatcaaggaa gccggcctca
      661 ccggcaaggt gttcctcgcc acgtccggcg gcggcgaaca gaaaggcgcc tgcgaacagg
      721 tcaagagcgg cgccttcgac ctcgacctga gctacgacgt acccacgcag gccagcaaca
      781 tggcggcgtc gatcaagtgg ctgttgcaga accccggcaa gacgaaggat gccaagggct
      841 cgatctacac caccctgatt ccgatcacga aggcgaacgc tgcgaccgaa ggcacgtgct
      901 ggaagctggg caagatctga ggccctcggt ccgaacgcga agagcccgga ccgggccggg
      961 cccggttcgg gcgcggctcc ccgcggcctt cgaacgacac cctgcatgaa ccacaccgcc
     1021 gacccaccgc aagaactggc atcgaccgcc gcggcagcgc cgtgggtcga cacgctgacg
     1081 cgctggcgct accgctattg gcccgaccac ctgctcggcg agatcctggc caaacgctgg
     1141 atggaaacgg cgattccggt ggtcgttctg atcctggtcg cgtcggcgct ttcgagcgcg
     1201 attccgaatt tcctttcggc cgcgagcctc gccgacaccg gccggcaggc gggcgagatc
     1261 ggcttcatcg tgctcggcat ggcgctggtg atgatcgtcg gcgggatcga tctttcggtc
     1321 ggttcgatgt tcgcgctgac gaacttctgc gcgctctact tcatgcacgt gctgaagtgg
     1381 cccgtcgccg gtgccgtcgt catgacgctc gtcttcggcg cggcgctcgg cgcggtgaac
     1441 ggcatcctgg tcggctactt caggctgcgc gcattcctga cgacgctgat cacgctgatc
     1501 atctaccgcg cgatgtacga cctgctgatc gccgactatg cgacggcgat cgccggcggg
     1561 ctgcccgact cggcggcgtg ggagttcatc ggcagcggtg aatggctcgg cgtgccgacc
     1621 gtcgtctttg cctacgccct ggtggcgatc ttcggccaca tcttcctgac gcgattgcgc
     1681 cccgggtggc acgtgatcgc gatcgggggt tcgcgccggt cggcctacaa caccggcatc
     1741 gcggtgcggc gcacagtcgc gatgtgctat gtcgcctgcg gcatgctgag cgccgtcggc
     1801 ggcatcttct tcgcatcgcg gctcgccacc gcgggcggcg acatcggcgt cggcctcgag
     1861 atcaccgtcc tcacggccgc ggtgctcggc ggcatcagcc tgggtggcgg caagggctcg
     1921 gtgatgaagg cgctggtcgg cacgctgatc gtgctgctga tcatcaatgg gctcaccacc
     1981 ctgtcgctgc acggcggcta caaccgcatg gtgctggcga ccatcctcct gctcgcagcg
     2041 gtgatcgaca tccgctggct caagaaccgg caccgcatcg tcaacaaggt ctatgtcagc
     2101 ccgacgtacc acgcgctgcc gcccgcgcct tcgaccgccc ccgattgcgg cacggcctgg
     2161 gccctgaacg acaagctgcg caacgtcaag gtgatcggcc tgggccggat cgaagggccc
     2221 gaggacgtga tcctggatcg ccacgacaac ctctacgccg gctcgcgcca cggcgacatc
     2281 atccggttct ttccgcccga ctacgagcgc atggaaatct atgcgcacat cggcggcacg
     2341 ccgctcggca tggccttcga ccgccacgac aacctctacg tctgcatcgg cggcatgggc
     2401 ctgtaccgcg tcacccccga acgcaaggtc gagaaggtca cggacgagac caaccgcagc
     2461 tactcgtcgg tcaacgacga cagccggctg cgcctggccg acgacctcga catcaccgac
     2521 gacggccgca tcttcttctc ggaggcgacg gtgcgcttcg agatgcatga gtgggcgacc
     2581 gacgggctcg aagcgcgcgg caacggccgc atcatctgct acgacaccaa caccggcaag
     2641 acgcacaccg tcatccgcga cctgaagttc ccgaacggcg tctgcatcgc gagcgacggc
     2701 cagtcgttcc tgttcgccga gacttggggc tgcagcgtga agcggcattg gttcgacggt
     2761 ccgaagaagg ggtcgaccga aatcgtgctc gaaaacctgc cgggcttccc cgacaacatc
     2821 aacaactcgt cggacggcca ctactggatg tcgctcgtcg gcatgcgctg cccggccctc
     2881 gacctggcgt ggaagatgcc gggcttccgg cgccgcatgg ccaagcgcgt gccgcgcgac
     2941 gagtggctgt tcccgaacat caacaccggc tgcgtgctca agttcaacga acgcggcgaa
     3001 gtgctcgaaa ccctgtggga cctcggcggc gagaaccatc cgatgatcac ctcgatgcgc
     3061 gaacaccgcg gccatctcta cctcggcggc atcatgaaca accgcgtcgg ccgctacacg
     3121 atcccgggcg ccgacccgga cttcgtgcag tacggcatgc gctggggcaa ggccgcatga
     3181 tcgacgcgtt aaagcagtgg cgcgaccggc tg
//
LOCUS       DASVHM010000220         2235 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_303235, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000220 DASVHM010000000
VERSION     DASVHM010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303235"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(9..2156)
                     /locus_tag="VF308_04265"
     CDS             complement(9..2156)
                     /locus_tag="VF308_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020748621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indolepyruvate ferredoxin oxidoreductase subunit
                     alpha"
                     /protein_id="HEX7435896.1"
                     /translation="MAERSFVEEVKKLRLGAGEVFRGEGILAVTKALLESGVSYVAGY
                     QGAPISHLMDVLADAQDILAEHGIRFENSASEATAAATLAASVNYPLRGAVTFKGPVG
                     INVASDALANLASGGVTGGALVIVGEDYGEGSSIMQERSHAFAMKSQIWLLDPRPNLP
                     AIVKAVKDGFDLSEASHTPVMLMLRIRACHVHGHFVASANRTASFTPQDALEAPRRDT
                     DRIVLPPASYVHEQEKVNVRWPAAVRFIEERGLNEFFAEGADDIGIIVQGGLYNTLLR
                     ALERLGLADVYGNSQIPLYVMNVAYPVVDSEARRFCTDKRAVLLVEEGQPNFLEQNLA
                     TILRQADLQTALHGKDFLAPAGEYTGAEVLKGTRAFLEHYGRVEALPKPVRAPKVIPL
                     TAETPLADNVHGRPPGFCTGCPERPIFSAMKLVERELGAHHVSADIGCHLFSILPPFH
                     IGNTTMGYGLGTAGASAFNTGSGKRAISMMGDGGFWHNGLTSGVANAVFNRSDNLTIV
                     VDNNYTSATGGQDILSSTAANPTRSTGHAIEQAVRGVGVKWVRTLRRTYDVAGMRDAL
                     REALTTTEKGPKVLIAQSECQLNKQRREKPLVRKAIAEGKRVVRERFGVDSDTCTGDH
                     SCIRLSGCPSLSIKPNPDPLRTDPVATVLDTCVGCGVCGEVSHAAVLCPSFYKARIVS
                     NPSRWDLLAERVRNKLIGWLQRRDARARARLAF"
BASE COUNT          335 a          748 c          775 g          377 t
ORIGIN      
        1 cggtcgcgtc agaacgcgag gcgcgcgcgc gcccgcgcat cgcggcgctg caaccagccg
       61 atcagcttgt tgcgcacgcg ctccgctaag aggtcccagc ggctcgggtt gctgacgatg
      121 cgcgccttgt agaacgaagg gcacagcacc gccgcgtgcg agacctcgcc gcagacgccg
      181 cagccgacgc aggtgtccag caccgtcgcg accggatcgg tgcgcagcgg atccgggttc
      241 ggcttgatcg agagcgacgg acagcccgag aggcggatgc acgagtgatc gcccgtgcac
      301 gtgtcggaat cgacgccgaa gcgctcgcgc acgacgcgtt tgccctccgc gatcgccttc
      361 ctcaccagcg gcttttcgcg gcgctgcttg ttgagctggc attcggactg cgcgatcagg
      421 accttcggac ctttctcggt cgtcgtcagc gcttcacgca gcgcatcgcg catgccggcg
      481 acgtcgtagg tgcggcgcag cgtgcgcacc catttgacgc cgacgccgcg caccgcctgc
      541 tcgatcgcgt ggccggtgct gcgcgtcggg ttcgccgccg tcgacgagag gatgtcctgc
      601 ccgccggtgg ccgaggtgta gttgttgtcg acgacgatcg tcaggttgtc gctgcggttg
      661 aagaccgcgt tggcgacgcc gctcgtcagg ccgttgtgcc agaagccgcc gtcgcccatc
      721 atcgagatcg cgcgcttgcc cgaaccggtg ttgaacgccg aggcgcctgc cgtgccgagg
      781 ccgtagccca tcgtggtgtt gccgatgtga aacggcggca ggatcgagaa caggtggcag
      841 ccgatgtcgg cgctgacgtg gtgggccccc agctcgcgct cgaccagctt catcgcgctg
      901 aagatcggcc gctccgggca gccggtgcaa aagcccggcg ggcggccgtg cacgttgtcg
      961 gcgagcggcg tttcggccgt gagcggaatc accttcggcg cccgcaccgg tttgggcagg
     1021 gcctcgacgc gaccatagtg ctcgaggaac gcgcgcgtcc ccttcagcac ctcggcaccg
     1081 gtgtattcgc ccgccggggc gaggaagtcc ttgccgtgca gggcggtctg cagatcggct
     1141 tggcgcagga tcgtcgccag gttctgctcg aggaaattgg gctggccttc ctcgaccagc
     1201 agcaccgcac gcttgtcggt gcaaaagcgc cgcgcctcgc tgtcgacgac cgggtaggcg
     1261 acgttcatca cgtagagcgg aatctgcgaa ttgccgtaca cgtcggcgag gccgagccgc
     1321 tcgagcgccc tcagcagcgt gttgtacagg ccgccctgca cgatgatgcc gatgtcgtcg
     1381 gccccttcgg cgaagaactc gttgagcccg cgctcctcga tgaagcgcac ggccgcgggc
     1441 cagcgaacgt tgaccttctc ctgctcgtgc acgtagctcg ccggcggcag cacgatgcgg
     1501 tcggtgtcgc ggcgcggcgc ttcgagggcg tcctgcggcg tgaacgaggc ggtccggttc
     1561 gcgctggcga cgaagtggcc gtggacgtgg caggcgcgga tgcgcagcat cagcatcacc
     1621 ggggtgtggc tcgcttccga aaggtcgaag ccgtctttca ccgccttgac gatggccggc
     1681 aggttcgggc gcgggtcgag cagccagatc tgcgacttca tcgcgaacgc atggctgcgc
     1741 tcctgcatga tcgaggagcc ctcgccgtag tcttcgccga cgatcacgag agcgccgccg
     1801 gtcacaccgc ccgacgccag gttggcgagc gcgtcggacg cgacgttgat gccgaccggc
     1861 cccttgaacg tgaccgcgcc gcgcagcggg tagttgaccg acgcggcgag cgtggccgcc
     1921 gcggtcgctt cgctggccga gttctcgaag cggatgccgt gctcggcgag gatgtcctgc
     1981 gcgtcggcca gcacgtccat caggtgcgag atcggcgcgc cctggtagcc ggccacatag
     2041 gagacgcccg actcgagcag cgccttcgtg accgcgagga tgccctcccc gcgaaacacc
     2101 tcgcccgcgc cgagccgcag cttcttgacc tcttcgacga acgatcgctc ggccatgcgt
     2161 gtctctgggt ctgtaccgat gtgaacgggt tgcgccgcag ctatattagt ttaagtggca
     2221 acatattcat aatca
//
LOCUS       DASVHM010000221         1796 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_232439, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000221 DASVHM010000000
VERSION     DASVHM010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232439"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1748)
                     /locus_tag="VF308_04270"
     CDS             complement(<1..1748)
                     /locus_tag="VF308_04270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HEX7435897.1"
                     /translation="MTFPLGSLRAEGGAPAGSGAGTYTRDGSRAAAPATHSPRLLRAQ
                     FRLLIGAVLGLLALLALATHSGLDPAFSTAGSGAGISNKAGVLGAWFSDLAYFLFDYS
                     CWWVMVVAARTWLGALARVLRSEAQVAPSPAPEQRPQWLFWFGLALLLAASTSLEWTR
                     LYQWESRVAGGHAGGVLGYGLGTASMKLLGFAGSGVFWIAMLVAGVSLALQFSWLRLA
                     ERIGEGIESLRTRRVERIDRAEDIRLGERALREREQLVEVEHQLHEDHLPIVIEAPVI
                     EVPKSARVVKERQKPLFKELADTRLPQVDLLDAAPGRVESVTPDTLEMTSRMIEKKLK
                     DFGVDVRVVAASPGPVITRYEIEPATGVKGAQVVALAKDLARSLSLVSIRVVETIPGK
                     TTMALELPNAKRQTIRLSEILGSEVYNDAASQLTLGLGKDIVGNPVVADLAKMPHCLV
                     AGTTGAGKSVGINAMILSLLYKAEARDVRLILIDPKMLEMSVYEGIPHLLCPVVTDMK
                     QAANALNWGVGEMERRYRLMSKLGVRNLSGYNKKIAEAAERGESLPNPFSLTPEQPEP
                     LERLPFVVIVIDELADL"
BASE COUNT          273 a          610 c          642 g          271 t
ORIGIN      
        1 aggtcggcga gctcgtcgat cacgatcacg acgaagggca ggcgctcgag cggctcgggc
       61 tgctcggggg tgaggctgaa cggattgggg agcgactcgc cgcgctcggc ggcctcggcg
      121 atcttcttgt tgtagcccga gaggttgcgc acgccgagct tgctcatcag cctgtagcgc
      181 cgctccattt cgccgacgcc ccagttgagc gcattggcgg cctgcttcat gtcggtgacg
      241 accgggcaga gcaggtgcgg aatgccttcg tagacgctca tctcgagcat cttcggatcg
      301 atcaggatca ggcgcacgtc gcgcgcctcg gccttgtaca ggaggctgag gatcatcgcg
      361 ttgatgccga ccgacttgcc ggcgccggtc gtgcccgcga ccaggcagtg cggcatcttc
      421 gcgaggtcgg cgacgaccgg gttgccgacg atgtccttgc ccagacccag ggtgagctgc
      481 gaggccgcgt cgttgtagac ctcggagccg aggatctcgg acaggcggat cgtctggcgc
      541 ttcgcgttcg gcagttcgag cgccatcgtc gtcttgcccg ggatcgtctc gaccacgcgg
      601 atgctgacca ggctcaggct gcgcgccagg tccttggcga gggccaccac ctgcgcgccc
      661 ttcacgccgg tggccggttc gatctcgtag cgcgtgatca ccgggccggg cgaggcggcg
      721 acgacgcgga catcgacgcc gaaatccttc agcttcttct cgatcatccg cgaggtcatc
      781 tcgagcgtgt cgggtgtcac cgattcgacg cggcccggcg ccgcgtcgag caggtcgacc
      841 tgcggcaggc gcgtatcggc gagctccttg aagaggggct tctggcgttc cttgacgacc
      901 cgcgcgctct tcggcacttc gatcaccggc gcctcgatca cgatcggcag gtggtcttcg
      961 tgcagctggt gctcgacctc gacgagttgc tcgcgctcgc gcagggcgcg ctcgccgagg
     1021 cggatgtctt cggcgcggtc gatgcgctcg accctgcgcg tgcgcagcga ttcgatgccc
     1081 tcgccgatgc gctcggccag gcgcagccac gagaactgca gcgccagcga gacgccggcc
     1141 acgagcatcg cgatccagaa cacgcccgag ccggcgaagc cgagcagctt catgctggcg
     1201 gtgccgagcc cgtacccgag cacgccgccc gcatgtccgc ccgcgacgcg cgactcccat
     1261 tggtacaggc gcgtccattc gagcgacgtg ctcgcggcga gcaggagcgc gaggccgaac
     1321 cagaacagcc actgcggccg ttgctcgggc gcgggcgaag gcgcgacctg cgcttcgctg
     1381 cgcagcaccc gcgccagggc gccgagccag gtccgggccg cgaccaccat gacccaccag
     1441 cacgagtagt cgaacaggaa gtaggcgaga tcggaaaacc aggccccgag aacgccggcc
     1501 ttgttcgaga tgccggcgcc gctgcccgcg gtcgagaacg ccggatcgag gccgctgtgc
     1561 gtggctagcg cgagcagggc gagcaagccc agcaccgcgc cgatcaacag gcggaactgg
     1621 gcccgcagga gcctgggcga gtgggtcgcc ggcgccgcgg cgcgcgatcc gtcgcgggtg
     1681 taggtgccgg cgcccgatcc ggctggagcg ccaccttcgg cgcggagcga tcccagggga
     1741 aacgtcatgt gcggattgtg gccgaagcca ccggaccggc ggagcgctcg cagcgg
//
LOCUS       DASVHM010000222         7661 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1169341, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000222 DASVHM010000000
VERSION     DASVHM010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7661
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1169341"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..563)
                     /gene="kdsA"
                     /locus_tag="VF308_04275"
     CDS             complement(<1..563)
                     /gene="kdsA"
                     /locus_tag="VF308_04275"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEX7435898.1"
                     /translation="MRLCGFDVGLDQPFFLIAGPCVVESEQLQLDVAGSLKEMTAALG
                     IHFIFKSSYDKANRSSGTSFRGPGMDRGLEILAKVRRDLKVPVLTDVHGIDEIAAVAS
                     VVDVLQTPAFLCRQTDFIRAVAQSGRPVNIKKGQFLAPHDMKNVIDKARAAAREKGLA
                     EDNFMACERGASFGYNNLVSDMRSLAI"
     gene            complement(643..2301)
                     /locus_tag="VF308_04280"
     CDS             complement(643..2301)
                     /locus_tag="VF308_04280"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEX7435899.1"
                     /translation="MTKFVFVTGGVVSSLGKGIASASLAAILESRGLKVTLIKLDPYL
                     NVDPGTMSPFQHGEVFVTDDGAETDLDLGHYERFVTTRMRRSNNFTTGQIYKSVLEKE
                     RRGDYLGKTVQVIPHVTNEIQEFILRGAGLDEKVDVAIVEIGGTVGDIESLPFLEAVR
                     QMSLKMGPTNCAFLHLTLVPWIAAAGELKTKPTQHSVQKLREIGIMPDALLCRADRPI
                     PDDERAKISLFANVPEFGVISVWDADTIYKVPRMLHSQGLDELICAKLHLHTKPANLT
                     RWDNLVHEVEHPQHEVTIAMCGKYTDLSDSYKSLNEALRHAGIHNHARVKIEYVDSED
                     LTPANVGNLARFDAILVPGGFGKRGVEGKILAAQFAREHRVPYLGICLGMQVATIEYA
                     RHKAGLAGANSTEFDADTPHPVIALIDEWQDADGSIQKRSAESDLGGTMRLGAQSSDI
                     KPGTLAHEIYGNVLTERHRHRYEANIHYLDRLTEAGLVISALTQREHLTEVVELPRSV
                     HPWFIGVQFHPEFKSTPWGGHPLFKSFIHAALQHQAERREKVAA"
     gene            complement(2394..3245)
                     /locus_tag="VF308_04285"
     CDS             complement(2394..3245)
                     /locus_tag="VF308_04285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7435900.1"
                     /translation="MPRSKKSGGRRIVFSHANGFPAGTYRILFEAWRAAGVEVHALPK
                     FGHDPRFPVSSNWPHLRDELIHFIDTQVGAPAFLVGHSLGGYVTLLAASRRPDLAQGI
                     VLLDSPILSGWKARALQFAKAAGVGERLSPAHVSKRRRQHWASAQAAHDHFASKPAFA
                     RWAPGVLRDYIESGTEPHDGHEAGPKGRRLAFERAIETAIYNSMPHHITRVLRAHPLR
                     CPMAFIQGSHSDEVRRVGLGATTRLTQGRISTLEGSHLFPLERPQETAAEVLRWIEAF
                     SAPAEAD"
     gene            complement(3248..4069)
                     /locus_tag="VF308_04290"
     CDS             complement(3248..4069)
                     /locus_tag="VF308_04290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010459683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome-type protease"
                     /protein_id="HEX7435901.1"
                     /translation="MTYCVGVKLDAGLVFLSDSRTNAGLDQISTFRKMMVYERPGDRF
                     MVMLSAGNLSISQQVREILQIEELENPHGPPITIWNATSMFDAARVLGSAVRHVYEQD
                     GIAFEKAGLDFNASMVFGGQIAGEPIRLFLVYSAGNFIEATRETCFFQIGESKYGKPV
                     LDRMLTPATPLDEAAKCVLVSMDSTLKSNLSVGLPLDLVVYENNRLETQQIVCIDERN
                     PYFQMIRGTWGEKLRQVFESIDDPEWGTATATAPLMAPSRYEPMRKITNPSVKIV"
     gene            complement(4066..6681)
                     /gene="mutS"
                     /locus_tag="VF308_04295"
     CDS             complement(4066..6681)
                     /gene="mutS"
                     /locus_tag="VF308_04295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011614934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HEX7435902.1"
                     /translation="MAYEENIVADQTVSAIPISTHTPMMQQYLRIKAEFADTLVLYRM
                     GDFYELFFDDARKASRLLDVTLTTRGQSAGAPVVMAGVPVHSVDAYLAKLIKLGEAVA
                     ICEQVGDVASAKGPVERKVVRVVTPGTVTDTELLADKCDALLLAVSEQRGTFGLAWLA
                     LSSGELGLAECAEPELAPWLARLAPAEILVDRERVPAALRELRCAITHRPAWQFDTEL
                     GSRKLCEQLRVATLAGFNAQDLPVAQAAAAALLGFAEHTQGRSLAHVRTLSVQRASDL
                     LDLPPTSCRNLELTQTLRGDDAPTLLSLLDTCASGMGSRALRHWLTRPLRERRVANER
                     LDAIEVLGQHGFAVLRESLRRVSDVERITARLALRQARPRELAGLRATLQALPDLRGG
                     VPQGAALLLDMLLEALCPPGAIVALLEAALAIDPAAQLRDGGVIAAGHDAELDELRGI
                     MQNCDAFLLQLELAERARTGIANLRVQYNKVHGFYIEVTQGQAAKVPPDYRRRQTLKN
                     AERYITPELKAFEDKALSAQERALAREKHLYDALVEQLVVHLEPLSALARALASLDAL
                     AALAERAATLDWKRPQFVREPCIEIVAGRHPVVEARLLETGAGTFMPNDCRLDAGRRM
                     LVITGPNMGGKSTFMRQVALIALLAAMGSFVPASACRLGPIDAIHTRIGAADDLANAR
                     STFVVEMTEAAAIVHGATEQSLVLMDEIGRGTSTFDGLALAAAIAHHLHERNRSFTLF
                     ATHYFELTEFPARHERALNVHVAAVESGDDIVFLHAIEAGPASRSYGVQVARLAGMPA
                     TLLRNARATLEALEAQKAAAQAQIDLFAVAAPAAEAAPSPLAAALARLDPDMLSPKEA
                     LQALYDLKSLQGKAS"
     gene            7027..7647
                     /locus_tag="VF308_04300"
     CDS             7027..7647
                     /locus_tag="VF308_04300"
                     /inference="COORDINATES: protein motif:HMM:NF024750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HEX7435903.1"
                     /translation="MQPGEHLSIDGCPGLRIEATATRRAWTYRFRSPTDGRMRQTQIG
                     LWPAMSFPSASAQWEILRNAREGGQDPALAKQQDRQARRDADKSATAMRQEQAYTVRR
                     LCDDYLVHHVDRHRKEKAAAEVRRMFDTMLGAVAEVSVDKLTRFQAFDLLESHQGIPV
                     QADLKLARSLSAFLHSMQGVPDRARGRVRDDLSRQVTRGIDIGGLR"
BASE COUNT         1220 a         2453 c         2634 g         1354 t
ORIGIN      
        1 atgatcgcga ggctgcgcat gtcggagacg agattgttgt agccgaaact cgcgccgcgc
       61 tcgcaggcca tgaagttgtc ctcggcaagg cccttttcgc gcgccgcggc gcgcgccttg
      121 tcgatcacgt tcttcatgtc gtgcggagcg aggaactggc ccttcttgat gttgaccggg
      181 cgtccgcttt gcgcgacggc gcggatgaaa tcggtctggc ggcacaggaa cgccggcgtc
      241 tgcagcacgt cgaccaccga cgcgaccgcg gcgatctcgt cgatgccgtg cacatcggtc
      301 agcaccggca ctttcaggtc gcgccggacc ttggcgagaa tctcgagccc ccggtccatg
      361 ccggggccgc gaaacgacgt gccgctcgag cgattggcct tgtcgtagct cgacttgaag
      421 atgaagtgga tgccgagcgc cgcggtcatc tccttgagcg agcccgcgac gtcgagctgc
      481 aactgctcgg actcgacgac gcagggcccg gcgatcagga agaacggctg gtcgagtccg
      541 acgtcgaacc cgcaaagcct catgcacgcc cccgcggcgc ctgcggcgcc tgccccccga
      601 gggggcacgg gtccggcttg aggcggctcg gcgccggacc cgtcacgccg ccaccttctc
      661 gcgtcgctcc gcctgatgct gcaacgccgc gtggatgaac gacttgaaga gcgggtgccc
      721 gccccagggc gtggacttga actccgggtg gaactgcacg ccgatgaacc aggggtgcac
      781 gcttctcggc agctcgacga cctcggtcag gtgctcgcgc tgggtcagcg ccgagatcac
      841 caggcccgcc tcggtcaggc ggtcgaggta gtggatgttc gcctcgtagc gatggcgatg
      901 gcgctcggtg agcacattgc cgtagatctc gtgggcgagc gtgccgggct tgatgtcgga
      961 gctttgcgcg ccgagccgca tcgtgccgcc gaggtcggat tcggcgctgc gtttctggat
     1021 cgagccgtcg gcatcctgcc attcgtcgat cagcgcgatc accgggtgcg gcgtgtcggc
     1081 gtcgaactcg gtgctgttgg cccccgcgag gcccgccttg tggcgcgcgt attcgatcgt
     1141 cgcgacctgc atgccgaggc agatgccgag gtagggcacg cggtgttcgc gtgcgaactg
     1201 ggccgcgagg atcttgcctt cgaccccgcg cttgccgaag ccccccggca ccaggatcgc
     1261 atcgaagcgg gcgaggttgc cgacattggc cggcgtcaga tcttcggaat cgacgtattc
     1321 gatcttcacg cgcgcatggt tgtggatgcc cgcgtggcgc agcgcctcgt tgagcgactt
     1381 gtacgagtcc gagaggtcgg tgtacttgcc gcacatcgcg atcgtgactt cgtgctgtgg
     1441 atgctcgacc tcgtgcacga ggttgtccca gcgcgtcagg ttggccggct tggtgtgcag
     1501 gtgcagcttg gcgcagatga gctcgtcgag cccctgcgag tgcagcatgc gcggtacctt
     1561 gtagatggtg tcggcatccc agaccgagat cacgccgaac tcgggcacgt tcgcgaagag
     1621 cgagatcttc gcgcgctcgt cgtccggaat cggccggtcg gcgcggcaca gcagggcgtc
     1681 gggcatgatg ccgatctcgc gcagcttctg cacgctgtgc tgggtcggct tggtcttgag
     1741 ctcaccggcc gcggcgatcc acggcaccag tgtcaggtgc aggaaggcgc agttcgtggg
     1801 ccccatcttc aggctcatct gacgcaccgc ttcgaggaac ggcagtgatt cgatgtcgcc
     1861 gacggtgccg ccgatctcga cgatcgcgac gtccaccttc tcgtcgagcc ctgcgccgcg
     1921 caggatgaat tcctggattt cgttggtgac gtgggggatc acctggaccg tcttgccgag
     1981 gtagtcgccg cggcgctcct tctcgagcac gctcttgtag atctggccgg tcgtgaagtt
     2041 gttcgagcgc cgcatccgcg tcgtcacgaa gcgctcgtag tggcccagat cgagatcggt
     2101 ttcggcgccg tcgtcggtga cgaacacctc gccgtgctgg aacggcgaca tcgtgcccgg
     2161 atcgacgttg agatacgggt ccagcttgat caaggtgact ttgaggccgc gcgattcgag
     2221 gatcgcggcg agcgacgcag aagcgatgcc cttgcccagc gaggacacca caccgccggt
     2281 gacaaagaca aacttggtca ttgcgtgcag cacctgcttg acgctgtgcc gtggtggtaa
     2341 agcgtgatta taggcgtcgg gtccgtgccg ccgctgcgcc cggggcagtc ttctcagtcg
     2401 gcttcggccg gtgcggaaaa tgcctcgatc cagcgcagca cttcggccgc cgtttcctgc
     2461 gggcgctcga gcgggaagag gtgcgatccc tcgagcgtgg aaatgcgccc ctgcgtcagg
     2521 cgcgtcgtcg cgccgaggcc gacccgccgc acttcgtccg aatgcgagcc ctggatgaag
     2581 gccatcgggc atcgcagcgg atgggcccgc aacacccgcg tgatgtgatg cggcatcgag
     2641 ttgtagatcg ccgtttcgat ggcgcgctcg aacgcgagac gccggccttt cgggcccgcc
     2701 tcgtggccgt cgtgcggctc ggtgccgctt tcgatgtagt cgcgcagcac ccccggcgcc
     2761 cagcgcgcga acgccggctt ggacgcgaaa tggtcgtggg ccgcctgcgc gctcgcccag
     2821 tgctggcgcc ggcgcttcga cacatgcgcg ggcgagagcc gctcgccgac ccccgccgct
     2881 ttcgcgaact ggagcgcgcg cgctttccag cccgacagga tcggtgaatc gaggagtacg
     2941 attccctgtg ccagatcggg ccggcgcgat gccgcgagca gcgtgacgta gccgcccagc
     3001 gaatggccga cgagaaaggc cggcgcgccg acttgcgtgt cgatgaaatg gatcaactcg
     3061 tcgcgcaggt gcggccagtt gctgctgacc ggaaagcgcg ggtcgtgccc gaatttgggc
     3121 agcgcgtgga cctcgacccc ggcggcgcgc caggcctcga acaggatccg gtaggttccg
     3181 gccggaaagc cgttggcatg ggagaagacg atccggcgtc ctcccgattt cttcgatctc
     3241 ggcacgttca gacgatcttc acgctcggat tcgtgatctt gcgcatcggc tcgtagcgcg
     3301 agggtgccat cagcggcgcg gtcgcggtgg cggtgcccca ttccggatcg tcgatcgact
     3361 cgaacacctg gcgcagcttt tcgccccaag tgccccggat catctggaag taggggttgc
     3421 gctcgtcgat gcagacgatc tgctgggtct cgaggcggtt gttctcgtag acgacgaggt
     3481 cgagcggcag gccgaccgac aggttcgact tgagggtcga atccatcgac acgagcacgc
     3541 acttggccgc ctcgtcgagc ggcgtcgccg gggtcagcat gcggtcgaga acgggcttgc
     3601 cgtatttcga ttcgccgatc tggaagaaac aggtctcgcg ggtcgcctcg atgaagttgc
     3661 cggccgaata gacgagaaag aggcggatcg gttcgccggc gatctggccg ccgaagacca
     3721 tcgaggcatt gaagtccagc cccgctttct cgaacgcgat gccatcctgt tcgtagacgt
     3781 ggcggaccgc cgagccgagc acgcgcgcgg catcgaacat gctcgtcgcg ttccagatcg
     3841 tgatcggcgg gccgtgcgga ttttcgagtt cctcgatctg caggatttcg cgcacctgct
     3901 gcgagatcga aaggttgccg gccgacagca tcaccatgaa gcgatcgccg ggccgttcgt
     3961 acaccatcat cttgcggaac gtgctgatct ggtcgaggcc ggcattggtg cgcgagtccg
     4021 acaggaacac caggcccgca tcgagcttga cgccgacgca gtaggtcatg acgcttttcc
     4081 ttgcaaagac ttgagatcgt agagcgcctg cagcgcttcc ttggggctga gcatatcggg
     4141 gtcgagccgc gccagggccg cagcgagcgg cgatggggcc gcttcggctg ccggcgcagc
     4201 caccgcgaac agatcgatct gtgcctgggc ggccgccttc tgcgcctcga gcgcctcgag
     4261 cgtggcgcgg gcgttgcgca gcagcgtggc cggcatgccg gccaggcgcg ccacctgcac
     4321 gccgtagctg cggctcgccg gcccggcctc gatggcgtgc aggaagacga tgtcgtcgcc
     4381 gctctcgacc gcggccacgt gcacgttgag cgcgcgctcg tggcgcgccg ggaattcggt
     4441 gagctcgaaa tagtgggtcg cgaacagcgt gaacgagcgg ttgcgctcgt gcaggtggtg
     4501 ggcgatcgcg gcggccagcg cgagcccgtc gaaggtcgag gtgccgcgcc cgatctcgtc
     4561 catcagcacc agcgactgtt cggtcgcgcc gtggacgatg gccgcggcct cggtcatctc
     4621 gaccacgaac gtcgagcggg cgttggccag gtcgtcggcc gcgccgatgc gggtgtggat
     4681 cgcgtcgatg ggccccagcc ggcaggcaga agccggcacg aacgagccca ttgcggccag
     4741 cagcgcgatc aacgcgacct ggcgcatgaa ggtgctcttg ccgcccatgt tgggcccggt
     4801 gatgacgagc atccggcgcc cggcatcgag ccggcaatcg ttgggcatga aggtgccggc
     4861 gccggtttcg agcagccgcg cctcgaccac cgggtgccgg ccggcgacga tctcgatgca
     4921 cggctcgcgc acgaactgcg ggcgcttcca gtcgagcgtc gcggctcttt cggcgagcgc
     4981 ggccagcgcg tccaggctcg ccagcgcacg ggccagcgcc gacaacggtt cgaggtgcac
     5041 gaccagttgc tcgacgagag cgtcgtacag gtgcttctcg cgtgcgagcg cgcgctcctg
     5101 ggccgacagg gccttgtcct cgaaggcctt caactcgggc gtgatgtagc gctcggcgtt
     5161 cttcagtgtc tgacggcgcc ggtagtcggg cggcaccttg gccgcctggc cctgggtgac
     5221 ctcgatgtag aagccgtgca ccttgttgta ctggacccgc aggttggcga tgccggtgcg
     5281 tgcgcgttcg gcgagttcga gctgcagcag gaacgcatcg cagttctgca tgatgccgcg
     5341 cagttcgtcg agctcggcgt cgtggcccgc ggcgatcacg ccgccgtcgc gcagctgcgc
     5401 cgccggatcg atggcgagcg ccgcctcgag cagcgcgacg atcgcgccgg gcgggcagag
     5461 cgcctcgagc agcatgtcga ggagaagggc ggctccttgc ggcacgccgc cgcgcaaatc
     5521 gggcagcgcc tgcaacgtcg cccgcaagcc cgcgagttcg cgtggccgcg cctgccgcaa
     5581 cgcgagccgc gcggtgatcc gttcgacgtc gctgacgcgg cgcagcgact cgcgcagcac
     5641 ggcaaagccg tgctggccga ggacttcgat cgcgtcgagg cgctcgttcg cgacgcgccg
     5701 ctcgcgcagc ggccgcgtca gccagtggcg cagcgcccga ctgcccatgc cgctcgcgca
     5761 ggtgtcgagc agcgacagca gcgtcggcgc gtcgtcgccg cgcagggtct gcgtcagttc
     5821 gaggttgcgg cagcttgtcg gcggcaggtc gagcaggtcg ctcgcccgtt gcacgctcag
     5881 tgtgcgcaca tgcgcgagcg atcgcccctg cgtgtgttcg gcgaaaccca gcaaggctgc
     5941 ggcagcggcc tgcgccacgg gcaaatcctg cgcgttgaag ccggccagcg tcgcgacgcg
     6001 aagctgctcg caaagcttgc gtgagccgag ttcggtgtcg aactgccagg ccgggcggtg
     6061 cgtgatcgcg cagcgcagtt ccctgagtgc cgcggggacg cgctcgcggt cgaccaggat
     6121 ctcggctggc gcgaggcgcg ccagccaggg ggcgagttcg ggttcggcgc attcggccag
     6181 cccgagttca ccgctcgaca gcgcgagcca ggccaggccg aaggtgccgc gctgttcact
     6241 cacggcgaga agcaacgcgt cgcacttgtc ggcgagcaac tcggtgtcgg tgacagtgcc
     6301 cggcgtgacc acgcgaacca ccttgcgctc gaccggtccc tttgcgcttg ccacgtcgcc
     6361 gacctgttcg cagatcgcga cggcctcgcc gagcttgatc agcttggcca gataggcgtc
     6421 gaccgaatgc accggaacgc ccgccatcac gaccggcgcg cccgcgctct ggccgcgcgt
     6481 cgtcagcgtg acgtcgagca ggcggctggc cttgcgcgca tcgtcgaaga agagctcgta
     6541 gaagtctccc atccggtaga gcaccagcgt gtcggcgaac tcggccttga tgcgcaggta
     6601 ctgctgcatc atcggcgtgt gggtggaaat cgggatggcg ctaactgtct gatcggccac
     6661 aatattttct tcgtaagcca ttgataataa agaagttatt cagagatgat ggctctgccg
     6721 tgcctcaacg acgcttttcg acatccagcc acatttcagg cctcagcgta ggtttttgcg
     6781 taggttttga agagtggtcc atttcggctg tcttgttaca taaaacctac gctgttgtta
     6841 catctttacg gggtggaagc gtccaacgga ggctcagcga ccttccccgt acagccaaaa
     6901 ttcaggcatc agcgtaggtt tcagcataga tcttgatcat gatgtggcag tgccaacgga
     6961 gcccagcctc gtgaaggttc agccctagaa atcaccatgc gattcgacgc ttgagctgcg
     7021 aagctgttgc aacccggcga gcaccttagc atcgatggtt gccccggtct tcgcatcgag
     7081 gccacagcga cgaggcgagc gtggacctat cgttttcgaa gtcccacaga cgggcgcatg
     7141 cggcagacgc agataggcct ctggccagcc atgtcgtttc cctcagcatc ggctcaatgg
     7201 gaaattcttc gtaacgcacg cgaggggggt caggacccgg cgctggccaa gcagcaggat
     7261 cgtcaggcca ggcgcgatgc cgacaagtcg gcgactgcga tgcggcagga gcaggcctac
     7321 acggtacgtc gcctgtgcga cgactacctc gtccaccatg tcgaccgaca ccggaaggag
     7381 aaggcagcag cagaggtccg ccgcatgttc gacaccatgc tgggcgctgt tgcggaggtg
     7441 tcggttgaca agctcactcg attccaggcc ttcgaccttc tcgaatcgca tcagggcatc
     7501 cccgtgcaag ccgatctcaa attggctcgc tcactctcgg ccttcctgca ttcgatgcag
     7561 ggagttccgg atcgggctcg cggccgcgtg cgggacgact tgtcaagaca agtgacgcga
     7621 ggtatcgata tcggcggtct gcgttagggc atagccttgc g
//
LOCUS       DASVHM010000223         7981 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_88266, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000223 DASVHM010000000
VERSION     DASVHM010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7981
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88266"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            446..2185
                     /locus_tag="VF308_04305"
     CDS             446..2185
                     /locus_tag="VF308_04305"
                     /inference="COORDINATES: protein motif:HMM:TIGR03710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HEX7435904.1"
                     /translation="MSVAIAGSGGSGVMTAGAMLLDAAARSGLYGLMVRTSGPQIRGG
                     EAAALLRLARRPIDSLDDTFDLLLAMDWQNVARFADEIPLRATSVVIGDADEGAAPEV
                     FGSSGARCVALPLKKMAKAIPGSWTNMLALGLAGGLAGIPTQALEAALRASWTRTEAG
                     LQANLAALHAGFAEAAGMAGIVRLDPGAAATGRRWLISGNEAAGYGAIRGGIRFVAAY
                     PITPATELLEWMAPALTKVGGTLLQAEDELASANMIIGASYGGVPSLTATAGPGLALM
                     TEAIGLAVSAEVPIVVVDVMRGGPSTGIPAKSEQSDLSFAVSGLHGDAPRLVLAPTSI
                     ADCLATTQWAVQLAEALQAPAIVLSDQFMGQSRAIIDRPADAGFVAARLTAAANTPDY
                     KRYRDTGSGVSPMAIPGTPGVVYTADGLEHSEAGIPSSQAKDHRVQLDKRERKLAQHD
                     YGRWWADIEEGDAEAADAAVITFGSVTGTVREAVARAAAQGVHLKLIALRLLAPAQPE
                     RLAEALAGVTRVLVVEQNHGAQLYRYLRSMYDLPGRPASFHRPGPLPLRPAELTAAIV
                     EWQRADAPQKETP"
     gene            2182..3021
                     /locus_tag="VF308_04310"
     CDS             2182..3021
                     /locus_tag="VF308_04310"
                     /inference="COORDINATES: protein motif:HMM:TIGR02177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEX7435905.1"
                     /translation="MNEVAIPPAVLTAANYKSPYKPIWCPGCGDFSVLSAITKALATL
                     QLPPHEVAVVSGIGCSSRIPAYTTCYGFHGVHGRALAAATGLKVARPDLTVLVTGGDG
                     DGYSIGGNHFMHACRRNVDLTYIVMDNHVYGMTKGQASPTTEPDWDNKLSPGGTGIRS
                     FHPLVIALASGASFVARAFSGDPNGTADIIAQGMRHPGFAFIEVLSPCVTFRPEQREW
                     KNRAHPAPVAPTDDAARAARRIMTDDGFNIGVLYAGNRTPYPARSGKATRAVAELEAE
                     FEL"
     gene            3018..3533
                     /locus_tag="VF308_04315"
     CDS             3018..3533
                     /locus_tag="VF308_04315"
                     /inference="COORDINATES: protein motif:HMM:NF014912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin family protein"
                     /protein_id="HEX7435906.1"
                     /translation="MSAAPRTLEEFMAQALAMEREAVERYTEFADAMEMHNNREVAAM
                     FRAMAQYESKHASQIMAEMGWKDAPKPPAGGFGWPGLEAPETVPIDEVHYLMQPWHAL
                     QLALAAERRAERFFDELAQAATSESLRRAARELQAEEHEHVELVLAWLAKVPVPDGDW
                     ATDPDPPRYTD"
     gene            3545..3943
                     /locus_tag="VF308_04320"
     CDS             3545..3943
                     /locus_tag="VF308_04320"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020652195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEX7435907.1"
                     /translation="MQNLLPPGWAAPIGYANGIAVDTGRIVFIAGQVGWNARQEFESA
                     DIVPQFEQALKNVLAVLSQAGGEARHICRMTAYCCDKPAYLAARAALGAIWREQMGSH
                     YPAMSMIFVADLLDSPGKIELEATAVLPGN"
     gene            complement(4041..5579)
                     /locus_tag="VF308_04325"
     CDS             complement(4041..5579)
                     /locus_tag="VF308_04325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome D1 domain-containing protein"
                     /protein_id="HEX7435908.1"
                     /translation="MELLGVDLARAAEIDAAALYQQHCAGCHGAQRLGAMGPALLPES
                     LERLRQPEALKVIAQGRAATQMAGFADKLGSAQIAALAQWVYTPVSPRPSWGDADIRA
                     SRIEADGVRGWPDKPQWKADPMNLFVVVEGGDHHVSIVDGDRFEVMYRFASRFALHGG
                     PKFSPDGRFVYFGSRDGWITKFDLWNLKTVAEVRAGINMRNVAVSADGRWVMAANYLP
                     HTLALFDADLSLVKSYSAANLARTATSRVSAVYDAAPRRSFIVALKDLPELWEISYDP
                     KAEPIHDGYVHDYKMSESLPTPGFLGVRRTVLDEPLDDFFFDQSYRHVLGATRPKTDG
                     TPSAQVVNLDVRRRIATLPLPGMPHLGSGITFAWNGTTVLASPNLKDGVVSVIDMKTW
                     QPVKQIATLGPGFFMRSHENTPYAWVDAMMDPKAKDTLLVIDKRTLEPVAQVKGDAGK
                     TLAHVEFTKDGRYALASLWEMDGALIVYDAATFKEVKRLPMSKPVGKYNVWNKISRSE
                     GTSH"
     gene            complement(5612..6835)
                     /gene="nirJ"
                     /locus_tag="VF308_04330"
     CDS             complement(5612..6835)
                     /gene="nirJ"
                     /locus_tag="VF308_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005797319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046500 - S-adenosylmethionine metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme d1 biosynthesis radical SAM protein NirJ"
                     /protein_id="HEX7435909.1"
                     /translation="MFRISQYMRELAAAERDGRYPEVKDRRPRGPVVIWNLVRRCNLT
                     CKHCYALSADHDYPNELSKAEVDAVMDDLARFHVPVLILSGGEPLLRPDIFEIAARAK
                     SMGFYVGLSTNGTLIDASMADRVSAQGFDYVGISLDGLRETHDRFRRKQGAFEASLGA
                     VRLLRERGVKVGLRYTMTDMNAADLPALLSLMDDEGVDKFYFSHLNYAGRGNIHRGRD
                     AHFGATRDALDRLFAAAWQAACEGRPLEYVTGNNDADGVYLLRWAERRLPRWADALRA
                     RLQAWGGNASGLHVANIDNEGHVHPDTMWWHHDLGSVRERPFSAIWSDVSEPLMAGLK
                     QQPRPVTGRCGGCTHLGICGGNTRVRAQQVTGDPWAEDPGCYLDDEEIGLATGNAAPR
                     VTVTPFHQRIRVASC"
     gene            complement(6841..7329)
                     /locus_tag="VF308_04335"
     CDS             complement(6841..7329)
                     /locus_tag="VF308_04335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005797321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX7435910.1"
                     /translation="MLSRFDERLIHATQAGLPLVAHPYAAIAATLGVSPQVVRERLEG
                     MLREGLIRRIGAVPNHYRLGYVANGMTVWDVADDLVDELGEKVGALEFVSHCYRRPRA
                     LPDWPYNLFAMVHGRSHSEVERAALQIHCLLADACRGQDILYSSRILKKTGLRLREPS
                     TE"
     gene            complement(7359..7817)
                     /locus_tag="VF308_04340"
     CDS             complement(7359..7817)
                     /locus_tag="VF308_04340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020203213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AsnC family transcriptional regulator"
                     /protein_id="HEX7435911.1"
                     /translation="MTIAAIDATDALLIRRLHGGFPLSDAPYADVARELGLSESDVLG
                     RLDRLLDEGVLSRFGPLFQIERAGGQFVLAAMQVPEDRFDAVAAAVNALPEVAHNYRR
                     EHRFNMWFVLACTSAQQAGAACARIESLTGLRVYAFPKEKEFFVELKLPV"
     gene            complement(7814..7966)
                     /locus_tag="VF308_04345"
     CDS             complement(7814..7966)
                     /locus_tag="VF308_04345"
                     /inference="COORDINATES: protein motif:HMM:NF037131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435912.1"
                     /translation="MVHGRERGAVRSTVDRVTQAAGLAGCPREVLFSTRRFKQTGSRY
                     FSQAAS"
BASE COUNT         1233 a         2713 c         2781 g         1254 t
ORIGIN      
        1 ggtgtggcag acgccgcaac cggcaatggc gacgacgacc tcgccggagt cggctgtcgc
       61 atcgaacgcg gcgcgttcga gcggcgtggt gactgccttc atcagccacc ggtaggcttc
      121 tatgctcatc gggtgcactc cttccgttgc gggtcttggg attcgccgtt tcgctcgtgg
      181 cgggccgttc ctgaaaagct tgaccggtcc gtccgttgcg attaatgtag cattctggta
      241 ccagaatacg tatttttcca attatcggcc atcgaagatg cgaggaaatt gacctgcatc
      301 agggataaga cgcagtcgag ccgattcact tgccacatcc gacgtgaagg agcgaagcgt
      361 gcatgccctt ggaatcgatg aatcgcgcac cgatccgggc cgcgacgcgc ccgcctcggt
      421 gcgcagcgca gcgccggtga cttccgtgtc cgtcgccatt gcgggaagcg gcggaagcgg
      481 ggtcatgacg gcgggtgcga tgctgctcga tgcggccgcg cgatcggggc tctacggact
      541 gatggtccgc accagcggac cgcaaattcg cggcggcgag gccgcggcgc tgcttcgact
      601 cgcgcgccgg ccgatagact cgctcgacga caccttcgat ctgctgctcg cgatggactg
      661 gcagaacgtc gcccgcttcg ccgacgagat tccgctgcgc gcgaccagcg tggtgatcgg
      721 tgacgccgac gagggcgctg cccccgaggt cttcggcagc agcggcgcgc gctgtgtggc
      781 gctgccgctg aagaagatgg ccaaggccat tcccggaagc tggaccaaca tgctggcact
      841 cggcctggcg ggcgggctcg ccggcattcc gacgcaggca ctcgaggccg cgctgcgtgc
      901 ttcctggacc cgcaccgagg ccggactgca agccaacctg gcggcgctgc acgcgggctt
      961 cgccgaggcg gccggcatgg ctggcatcgt ccgcctcgac cccggtgcgg cggccaccgg
     1021 caggcgctgg ctcatcagcg gcaacgaagc cgccggctac ggcgcgattc gcggcggcat
     1081 ccgtttcgtc gccgcctatc cgatcacgcc ggccaccgaa ctgctcgagt ggatggcgcc
     1141 cgcgctgacg aaggtcggcg gcacgctgct gcaggccgaa gacgaactcg cctcggccaa
     1201 catgatcatc ggcgcctcgt atgggggcgt gccttcgctt accgccaccg ccggccccgg
     1261 actcgcgctg atgaccgaag ccatcgggct ggcggtcagc gccgaagtgc ccatcgtggt
     1321 ggtcgacgtg atgcgcggcg gcccgtccac cggtattccg gccaagagcg agcagagcga
     1381 cctgtcgttc gcggtgagcg gcttgcacgg cgacgcgccg cgcctggtgc tggccccgac
     1441 ctcgatcgcc gactgcctgg cgacgacgca gtgggcggtg cagctcgccg aggcgctgca
     1501 ggcgcccgcc atcgtcctgt cggaccagtt catgggccag tcgcgcgcga tcatcgaccg
     1561 gcccgccgac gccggcttcg tcgccgcacg cctgacggcc gcggcgaaca cgcccgacta
     1621 caagcgctat cgcgataccg ggtcgggcgt ctcgccgatg gccattcccg gcacgcccgg
     1681 cgttgtctac accgccgacg ggctcgaaca cagcgaagcc ggcatcccga gcagccaggc
     1741 gaaagatcat cgcgtgcagc tcgacaagcg cgagcgcaag ttggcgcaac acgactacgg
     1801 tcgctggtgg gccgacatcg aggaaggcga cgccgaagca gccgacgccg ccgtgatcac
     1861 cttcggctca gtcaccggca ctgtgcgcga ggccgtcgcg cgcgccgcgg cccagggggt
     1921 ccacctcaag ctgatcgcgc tgcgcctgct cgctccggcg cagcccgagc ggctcgccga
     1981 ggccctggcc ggcgtgacgc gggtgctcgt cgtcgagcag aaccacggtg cgcagctgta
     2041 ccgctacctg cgctccatgt acgacctgcc gggccggccg gcgagcttcc atcgacccgg
     2101 accgctgccg ctgcgcccgg ccgaactcac ggccgcgatc gtcgaatggc agcgcgccga
     2161 cgcgccccaa aaggaaaccc catgaatgaa gtcgccatcc ctcccgccgt gctgaccgcg
     2221 gcgaactaca agtcgcccta caagccgatc tggtgtcccg gctgcggtga cttcagcgtg
     2281 ctcagcgcga tcaccaaggc gctcgcgacc ctgcaactgc ccccgcacga ggtggcggtc
     2341 gtttccggca tcggctgctc gtcgcgcatt cccgcgtaca ccacctgcta cggctttcac
     2401 ggcgtgcacg gccgcgctct cgcggctgcc accggtctga aggtggcgcg ccccgacctg
     2461 acggtgctcg tcacgggcgg cgacggcgac ggctactcga tcggcggcaa ccacttcatg
     2521 catgcctgcc ggcgcaacgt cgatctgacc tacatcgtga tggacaacca cgtctacggc
     2581 atgaccaagg gtcaagcgtc gccgacgacc gaacccgact gggacaacaa gctatcgccc
     2641 ggcggcaccg gcatccgctc gttccatccg ctggtgatcg cgctggcgtc gggggccagc
     2701 ttcgtcgccc gcgcgttttc cggcgatccg aacggcacgg cggacatcat cgcgcaaggc
     2761 atgcgccacc cgggcttcgc gttcatcgag gtcctgagcc cgtgtgtcac gttccggccc
     2821 gagcagcgcg agtggaagaa ccgcgcgcac ccggcgccgg tggcgccgac cgacgacgcg
     2881 gcccgcgccg cgcgccgcat catgaccgac gacggtttca acatcggcgt gctctatgcc
     2941 ggtaatcgca cgccctatcc ggcacgttcc ggcaaggcga cgcgggcggt ggctgaactc
     3001 gaagcggagt tcgagctgtg agcgccgcgc cgcgcacgct ggaggagttc atggcccagg
     3061 cgctcgcgat ggagcgcgag gcggtggagc gctacaccga attcgccgac gcgatggaaa
     3121 tgcacaacaa ccgcgaagtc gcggcgatgt tccgcgccat ggcgcagtac gaaagcaagc
     3181 atgccagcca gatcatggcc gagatgggct ggaaggacgc ccccaagccg cctgccggcg
     3241 ggttcggctg gccgggcctc gaggcgcccg agacggttcc catcgacgag gtgcattacc
     3301 tgatgcagcc ttggcacgcg ctgcaactgg cgctggcggc ggagcggcgc gcggagcgct
     3361 tcttcgatga attggcgcag gctgcgacca gcgagtcgct gcgccgcgcg gcgcgcgagt
     3421 tgcaggccga ggaacacgaa catgtcgagc tcgtgctggc ctggctcgcc aaggtgccgg
     3481 tgcccgacgg cgattgggcc accgatcccg atccgccgcg ctataccgac tgaggacgaa
     3541 gaccatgcag aaccttcttc ctcccggctg ggctgcgccg atcggctacg cgaacggcat
     3601 cgccgtggat accggccgga tcgtgttcat cgccggccag gtcggttgga acgcaaggca
     3661 ggagttcgag tcggcagaca tcgtgccgca gttcgagcag gcgctgaaga atgtgctcgc
     3721 ggtgctgagt caggctggcg gcgaggccag gcacatctgc cgcatgacgg cctactgctg
     3781 cgacaagccg gcgtacctcg ccgctcgcgc cgcactcggc gccatctggc gcgagcagat
     3841 ggggtcgcac tacccggcga tgagcatgat cttcgtcgcc gacctgctcg acagcccggg
     3901 caagatcgag ctggaagcca ccgcggtcct gcccgggaat taggacgcac gcctcacccg
     3961 atcggtcaca cgccgaggaa gcgcgagagc gcgtcgggct gccgggccag agcggtcgac
     4021 tcttccacga cgacgcgcgc tcagtgcgac gtcccctccg accggctgat cttgttccac
     4081 acgttgtact tgccgaccgg cttgctcatc ggcaggcgct tcacctcctt gaaggtagcg
     4141 gcatcgtaga cgatcagcgc gccgtccatc tcccacaggc tggccagcgc gtaacggccg
     4201 tccttggtga actcgacgtg cgccagcgtc ttgccggcgt cgcctttgac ctgcgccacc
     4261 ggttcgagcg tgcgcttgtc gatgacgagc agcgtgtcct tggctttcgg atccatcatc
     4321 gcatcgaccc aggcataggg tgtgttctcg tggctgcgca tgaagaagcc cgggcccagc
     4381 gtcgcgatct gcttgaccgg ttgccaggtc ttcatgtcga tcacgctcac cacgccgtcc
     4441 ttcaggttcg gcgaggcgag caccgtggtg ccgttccacg cgaaggtgat gcccgagccg
     4501 aggtgcggca tgccgggcag gggcagggtg gcgatgcggc ggcgcacgtc gaggttgacg
     4561 acttgcgccg acggcgtgcc gtcggtcttg ggccgcgtgg cgccgagcac gtggcggtag
     4621 ctctggtcga agaagaagtc gtcgagcggc tcgtcgagga cggtgcggcg cacgccgaga
     4681 aagcccggtg tcggcagcga ttcgctcatc ttgtagtcgt gcacgtagcc gtcgtggatt
     4741 ggctcggcct tcgggtcgta cgagatctcc cacagctcgg gcaggtcctt cagcgcgacg
     4801 atgaagctgc gccgcggcgc agcgtcgtag acggccgaga cgcgcgaggt cgcagtcctg
     4861 gcgagattgg ccgcgctgta gctcttgacc aggctcaggt cggcgtcgaa gagggccagc
     4921 gtatgcggca ggtagttcgc cgccatcacc cagcgcccgt cggccgagac ggcgacgttg
     4981 cgcatgttga tgccggcgcg cacctcggcg acggtcttca ggttccacaa gtcgaacttg
     5041 gtgatccagc cgtcccgcga gccgaagtac acgaagcgac cgtcgggcga aaacttcggc
     5101 ccgccgtgca gcgcgaagcg cgacgcgaag cggtacatga cttcgaacct gtcgccgtcc
     5161 acgatcgaca cgtggtggtc gccgccttcg acgaccacga acaggttcat tgggtcggct
     5221 ttccactgcg gcttgtccgg ccagccgcgc acgccgtcgg cctcgatgcg cgaggcgcgg
     5281 atgtcggcat cgccccagct cggacgcggg ctcaccggcg tgtagaccca ttgcgcgagc
     5341 gccgcgatct gcgcgctgcc cagcttgtcg gcgaagcccg ccatctgcgt cgcggcgcgg
     5401 ccctgcgcga tgaccttgag cgcttcgggc tggcgcagac gctccaggct ctcgggcagc
     5461 agcgccgggc ccatcgcgcc caggcgctgc gcgccatggc agccggcgca gtgttgctgg
     5521 tacagcgccg ccgcatcgat ctcggcggcg cgcgcgagat cgacgcccag cagctccagg
     5581 ctggccgcga gcgcggcgcg ccatgccggt ttcagcacga cgccacccgg atgcgctggt
     5641 ggaagggcgt gaccgtcacg cgcggcgcgg cgttcccggt cgcgaggccg atttcttcgt
     5701 cgtcgaggta gcagcccggg tcttcggccc aggggtcgcc ggtgacctgc tgcgcccgca
     5761 cgcgcgtgtt accgccgcag atgcccaagt gcgtgcagcc gccgcagcgg ccggtgacgg
     5821 ggcgtggctg ctgcttcaac cccgccatca gcggctccga cacgtccgac cagatggcgg
     5881 agaagggccg ttcacgcacg ctgcccaggt cgtggtgcca ccacatcgtg tcggggtgca
     5941 catggccttc gttgtcgatg ttggccacgt gcaggccgga ggcgttgccg ccccaggctt
     6001 gcaggcgtgc gcgcaacgcg tcggcccagc gtggcaggcg gcgctcggcc cacctcagca
     6061 ggtagactcc atcggcgtcg ttgttgccgg tcacgtattc gagcgggcgg ccctcgcagg
     6121 cggcctgcca cgcggccgcg aagagccggt ccagggcgtc gcgcgtggcg ccgaaatggg
     6181 catcgcggcc gcggtggatg ttgccgcggc cggcgtagtt gaggtgcgag aagtagaact
     6241 tgtcgacgcc ttcgtcgtcc atcagcgaca gcagcgcggg caggtcggcg gcgttcatgt
     6301 cggtcatcgt gtagcgcagt cccaccttca cgccgcgctc gcgcaacagc cgcacggcgc
     6361 ccagcgatgc ctcgaaggcg ccctgcttgc ggcggaagcg gtcgtgcgtc tcgcgcaggc
     6421 cgtcgaggct gatgccgacg tagtcgaaac cttgcgcgct gacgcggtcg gccatggacg
     6481 cgtcgatcag cgttccgttg gtcgaaaggc cgacatagaa gcccatggac ttggcgcgcg
     6541 cggcgatctc gaagatgtcg ggccgcagca gcggctcgcc gccggagagg atcagcaccg
     6601 gcacatggaa gcgcgcgagg tcgtccatca ccgcgtcgac ctcggccttg ctcagttcgt
     6661 tggggtaatc gtggtcggcc gagagcgcgt agcagtgctt gcaggtgagg ttgcagcgcc
     6721 gcaccaggtt ccagatcacg acgggaccgc gcggtctcct gtccttcacc tcggggtagc
     6781 gaccgtcgcg ttcggcggcg gccagctcgc gcatgtattg ggagatgcga aacatggtgt
     6841 ctattcggtg gagggctcgc gcaggcgcag cccggttttc ttgaggatgc ggctgctgta
     6901 gaggatgtcc tggccgcggc aggcgtcggc cagcaggcag tggatctgca gcgccgcgcg
     6961 ttcgacctcg ctgtggctgc ggccgtgcac catcgcgaac aggttgtaag gccagtcggg
     7021 cagggcgcgc gggcgccgat agcaatgcga gacgaactcg agggcgccga ccttctcgcc
     7081 cagttcgtcg accaggtcgt cggccacgtc ccacaccgtc atgccattgg ccacatagcc
     7141 gagtcggtag tggttgggca cggcgccgat gcggcggatg aggccctcgc gcagcatgcc
     7201 ttcgaggcgt tcgcgcacga cctggggcga gacccccagc gtcgcggcga tggccgcgta
     7261 ggggtgagcc accagcggca agccggcctg agtggcatgg atcagtcgtt cgtcgaagcg
     7321 gctcagcatg gtgcggtgtc ctgtggctat ggccggccct agaccggcag cttgagctcg
     7381 acgaagaatt ccttctcctt ggggaaggcg tagacccgaa gaccggtcag ggattcgatc
     7441 cgcgcacagg ccgcgccggc ctgctgcgcg gaggtgcagg cgagcacgaa ccacatgttg
     7501 aagcggtgtt cgcgccggta gttgtgcgcc acctcgggca gggcgttgac cgctgcggcg
     7561 acggcgtcga atcgatcttc gggcacctgc atcgcggcca ggacgaactg tccccctgcc
     7621 cgctcgatct ggaacagcgg gccgaagcgc gacagcacgc cctcgtcgag caggcggtcc
     7681 agtcgcccca gcacgtcgct ctcgctcagg ccgagttcgc gcgccacgtc cgcatacggc
     7741 gcatcgctga gcggaaagcc gccgtgcagg cggcggatca gcagcgcgtc ggtggcgtcg
     7801 atggccgcga tcgtcatgac gccgcctggg agaagtagcg gctgccggtc tgcttgaagc
     7861 ggcgcgtgct gaaaagcact tcgcgcgggc agccggccag gccggccgct tgggtgacgc
     7921 gatcgacggt cgaccggacc gcgccgcgtt cgcggccgtg caccatgcag tacagggtgt
     7981 a
//
LOCUS       DASVHM010000224         1997 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_808786, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000224 DASVHM010000000
VERSION     DASVHM010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_808786"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VF308_04350"
     CDS             <1..236
                     /locus_tag="VF308_04350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435913.1"
                     /translation="ESPCTTVAGRVLYFQGSPNSAPAAHKRSTLHALDLDTRAILWSF
                     SRQTQEPDWPFGHVTPVNGGLWVDSYQALVKLQ"
     gene            complement(535..>1997)
                     /locus_tag="VF308_04355"
     CDS             complement(535..>1997)
                     /locus_tag="VF308_04355"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEX7435914.1"
                     /translation="AMAGQERDLTGFANRLAAIDPTSWPIPQQVDYYVVRAEVHGLDF
                     DHRVLRPWANNPAFYVTAYGDESDQPAREGPLAAGGVELWKYTLPLSAGDAAAIGAGL
                     QPIPKLLEQAKTNLTGNEKDLWTYGEKAIKAQSADLAAFAAKLGDTQPDLKATVEKAR
                     TATDSLAAWLDSQAASKTGPSGIGVDNYNWYLKNVQLVPYTWQDEVTLMERELGRSSA
                     SLALEEQKHAKLPPQVPIASAAEHDQRFGAAVTEYMAFLEDHDILTIRPDMDPGLRAH
                     LGSFSPGPREFFGEVDARDPEVMRTHGYHWFDKGWMANVGHPSPVRKVAQLYNIFNTR
                     TEGFATAFEELMLQAGMFEARPRSRELVYILVAERAARALGDLRMHSNEFTLEQASQF
                     ASDHTPRGWLSMRGNLVRGEQHLYLQQPAYGTSYLIGKIETDKLIAERRRQLGDAFTM
                     KRFMDEFNAAGLVPISLVRWELTGQMSDDVKRMLGR"
BASE COUNT          307 a          656 c          664 g          370 t
ORIGIN      
        1 tcgagtcgcc gtgcacgaca gttgcgggcc gcgttctcta cttccagggt agcccgaaca
       61 gcgcgccggc tgcgcacaag cgaagcaccc tgcacgcgct cgacctcgac acgcgcgcga
      121 tcctgtggtc gttctcgcgc caaactcagg agcccgactg gcccttcggt cacgtgacgc
      181 ccgtcaatgg cgggctgtgg gtggattcct atcaggcgct ggtgaagctg cagtgacgag
      241 gtctcacggc tccgtgtact acctcgccgg cccaccgggc atagtgacgg cgatgcgcga
      301 ctcagcgacg gcatcttagc ggcgcaccga tctcgccgat gatgcgggcg cccgtagctc
      361 aggtggatag gacatgggac ttctaagccg ggggtcgcag gttcgagata gacctcgaat
      421 ttgatggtcg attgaaggtg ctgacacact cgcatttcac cgacaaaccc gcagagcaga
      481 ctacgatgtg acaggtttct ttgtgtgaca gtccgacgcc ggccgtttcg cgcgttaccg
      541 ccccagcatc cgcttcacgt cgtcagacat ctggccggtg agctcccagc ggacgagcga
      601 gatcggcacg agacccgccg cgttgaactc gtccatgaag cgcttcatcg tgaacgcgtc
      661 gccgagctgc cgccggcgct ccgcgatgag cttgtcggtc tcgatcttgc caatcagata
      721 gctcgtgccg taggccggct gctgcaggta gagatgctgc tcgccgcgga ccaggttgcc
      781 gcgcatgctg agccagccgc gcggcgtgtg gtcggaggca aactgtgagg cctgttcgag
      841 cgtgaactcg ttgctgtgca tgcggaggtc gcccagcgcc cgcgcggcgc gttcggcgac
      901 taggatgtag accagctcgc gcgagcgcgg ccgagcctcg aacatgccgg cctgaagcat
      961 cagctcctcg aacgccgtcg cgaaaccctc ggtgcgcgtg ttgaagatgt tgtagagctg
     1021 cgccactttg cgcaccggac tcggatggcc gacattcgcc atccaaccct tgtcgaacca
     1081 gtgatagccg tgcgtgcgca tcacttccgg gtcgcgcgcg tcgacctcgc cgaagaactc
     1141 gcgcgggccg ggcgagaagc tgccgagatg cgcgcgcagc ccggggtcca tgtcgggccg
     1201 gatcgtcagg atgtcgtgat cctcgaggaa cgccatgtac tcggtcaccg cggcgccgaa
     1261 gcgctggtcg tgctcggcgg cgctcgcgat cggcacctgc ggcggcagtt tcgcgtgctt
     1321 ctgctcctcg agcgccaatg aggccgacga gcgcccgagt tcgcgctcca tgagagtgac
     1381 ctcgtcctgc caggtgtacg gcacgagctg gacgttcttg agataccagt tgtagttgtc
     1441 gacgccgata cccgacggcc ccgtcttgct cgcagcctgg ctgtcgagcc aggcggccag
     1501 cgagtcggtg gcggtcctgg ctttctcgac cgtcgccttg aggtccggct gcgtgtcgcc
     1561 gagcttcgcg gcaaacgccg cgaggtccgc gctctgggcc ttgatggcct tctcgccgta
     1621 ggtccagaga tccttctcgt tgcccgtcag gttcgtcttc gcctgttcca gcagcttcgg
     1681 aatcggttgc agcccggcgc cgatcgcggc cgcatcgccc gctgacagcg ggagcgtgta
     1741 tttccacagt tccacgccgc cagccgcgag cgggccttcg cgcgccggct ggtcgctttc
     1801 gtcgccgtag gcggtgacgt aaaacgccgg gttgttcgcc cacggcctga gcacgcgatg
     1861 atcgaagtcg aggccgtgga cctcggcgcg gacgacgtag tagtcgacct gctgcgggat
     1921 cggccaactc gtcgggtcaa tggcggccag gcggttggcg aatcccgtca ggtcgcgctc
     1981 ctgcccggcc atcgcgg
//
LOCUS       DASVHM010000225         9230 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_377183, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000225 DASVHM010000000
VERSION     DASVHM010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 9230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9230
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377183"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1573)
                     /locus_tag="VF308_04360"
     CDS             complement(<1..1573)
                     /locus_tag="VF308_04360"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX7435915.1"
                     /translation="MSHFHPYVPRFARRWATGRSVLAPDLTPALRGAIFVADIAGFTA
                     LSEAKARAGQAGIEEMQAILNRCFERIVAIIEEGGGEVYKFAGDATIAWWPADASSAR
                     DAVQGAAATALRLQALVPELELAARIPLSLRIGIGEGELYTAILGGVNDRWEAVLGGD
                     ALAQVAGADAALPGQVVLSAKAFEMLRADCSGSAVANGAFAIDGVTPPLPIEARPAAP
                     EPVEAIILPFVPRHVANRVRASPHGWLAELRFATVLFAAAPAPRDLEALQRSVEAMQR
                     SVYGCGGSVVQCLVDDKGKLVLIGAWGIPGSSYANDAERSIRAAHALHTALVASGQRP
                     SVGVASGELFAGLRGAPSRSEFALIGATVNRAARLAEAANGKVWCDEPTSRTANAIAF
                     AALPDVTLKGIGRVKVFEPQGRRTQAGAEAGELVGRDAELGVLLEALARVSADPARGA
                     VILVEGEPGIGKSRLCEAFASAAREAGLVVAEAGSEPLDNGTAYRPLRDVMRTLLGLD
                     ATLSADARREKVLALM"
     gene            complement(1639..2880)
                     /locus_tag="VF308_04365"
     CDS             complement(1639..2880)
                     /locus_tag="VF308_04365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008251258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6596 domain-containing protein"
                     /protein_id="HEX7435916.1"
                     /translation="MLTPVIDSICRAEGARVLAGLIRRFGDFELAEDAMQDAFEKALE
                     TWPRQGLPAAPAAWLTTVARRRALDLLRRRATGPLYTDEPPDMAAPEPDQNDSLAAHL
                     SGVDDDRLRLVFTCCHPAIAQPAQMALALRTLCGLSTREIARAFLEPEATTAQRLVRV
                     KKKILDARIPYKVPSRELLPERLQAVLGVVYLVFNEGYATTANDGLMRPDLCAEAIRL
                     ARLLVELMPDEPEVLGLLALTLLHDARRATRVDADGALVPLEEQDRARWQHDLIDEGL
                     AALDTALAQRRRGPYQVQAAIAALHARAARADETDWKQIAALYGGLLREQPGAVVELN
                     AAVALAMAEGPEHGLAWIARLEEREELVGYHLLPAARADLLRRLGRTVEAEAAYGAAL
                     ALVRNRAERLYLERRLAECRA"
     gene            complement(2923..3321)
                     /locus_tag="VF308_04370"
     CDS             complement(2923..3321)
                     /locus_tag="VF308_04370"
                     /inference="COORDINATES: protein motif:HMM:NF013304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HEX7435917.1"
                     /translation="MIVPTISAVCAAILGLLAALLAVQVIRNRVRFNINAGDGGNAVL
                     AQSIRAHSNLAEHVPLALLLLSFAEAGGAWRGLIIALGAALVVARFASAWGLSHSLGP
                     TSARQAGAGLTVLAIVISSLLILYRAAMAL"
     gene            complement(3382..3747)
                     /locus_tag="VF308_04375"
     CDS             complement(3382..3747)
                     /locus_tag="VF308_04375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007740648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEX7435918.1"
                     /translation="MQYMILIYGDEKTFATTLKDPEAQKKMYADYTQYSADMQAAGVI
                     RGGAELKPTLSATTVRVRNGKTVTTDGPFAETKEQLGGYYLIDVPNLDEAVHWAARCP
                     SANGGSIEVRPVGAMPSAK"
     gene            complement(3920..6259)
                     /locus_tag="VF308_04380"
     CDS             complement(3920..6259)
                     /locus_tag="VF308_04380"
                     /inference="COORDINATES: protein motif:HMM:NF040071.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6351 family protein"
                     /protein_id="HEX7435919.1"
                     /translation="MTIQTLSNRADLISGGSALMEVKLPAGAIATQLKVDVDGTDVTP
                     AFTTLGNGRTLGVVTGLKNGANVVTAKSANGTFVAARVTVTNHLIGGPVLLSAQTTPW
                     ICATPVPVAASGVQPASNASGLSTTATDAQCNIATEFKLFYRTTTPVTVAAGDGGCSF
                     VLPDPTPTIAVPNPTTPANSCFQPYVAGTTAAASVASTTTTNGVTLPYIVRVERGTIN
                     RGIYDIAVLFDPTKSAWTATAPQPQWNGKVFYTYGASTGQPRLQFRTEQNWVVSGITG
                     TNDDSALRMGFMVVDNSLTDSLYNSNRILVNETTMMMKEHIVANYGEIMYTMANGCSG
                     GSIGQNTVSSTYPGLLDGIQPGCDFSDSITTGIEVADCVLLVNAYVTPEWTALMAGLT
                     PTQINAKKTAINGHLDQNGCQSWNNSFGFNNKPGNYIPTLVNPATGAIAPNGAPRNNC
                     LLPAALVYDPVTNPTGTRCGDPDLAAAVWGTTAGIAAGSTRALSTNDNVGVQYGLNAL
                     IAGAITPAEFVTLNEKIGGRDADSNAIATRSTADLAALDIAYRSGIVGSGVNLAKLPI
                     IDSRGWDEQGIHYIWRSFAERARIDADNANNHGNHVMWRYGTGLLPGTAAQIAAVTVK
                     SFLTMDTWLSNLVTSAPKASMNAERTQAQVIAAKPAAAVDLCYLTGDDTFATPVFDQA
                     VCDADPRLPKHSSPHQVAGGSLMENILKCQVKPLVAGDYTGITFTAGQLTRLNAVFPS
                     GVCDWSKAGVGQQAPVSPQTYAAGPGGVPLPPAPQSAPI"
     gene            complement(6537..8327)
                     /locus_tag="VF308_04385"
     CDS             complement(6537..8327)
                     /locus_tag="VF308_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007833596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyclic terpene utilization AtuA family protein"
                     /protein_id="HEX7435920.1"
                     /translation="MESGEKTVRIGGASGFWGDSSVGAPQLVGSGQIDYLVFDYLAET
                     TMAILAAARAKKPELGYATDFVDIAMKSVLGEVVRRGIKVVSNAGGINPQACAQALGR
                     LAEAQGLALRIAVVEGDDVSAQIADLRASGQRDLFTAQVLPERVLSANAYLGAVPIAR
                     ALDAGADVVITGRCVDSAVTLGALMHEFGWRETDWDLLAAGSLAGHIIECGCQATGGL
                     YTDWEAVPDWATIGYPIAECRSDGSFTITKPEGTGGLVVRAAVAEQLLYEIGDPGAYL
                     LPDVICDFRGVTIEPAGANRVRVSGAKGFAPTDAYKVSATTMDGYRAAGTLVIVGIDA
                     ARKAQRSGEAILQRTRAILRDAGFPDYRASRIEVVGAESLYGPHSRAAGAREVMMRVV
                     VDHPSKQALETFAREIAPAGTSWSPGTTGASGGRPSVSPLIKPAAFMLDKRAVEVSFV
                     LDGHRHPVAIGLHGGTLPQGDAPLPPAVADTGAPLVEVALVRLAWARSGDKANLSNIG
                     LVARRPEWLPLLWARVTPEAVKAYFAHLVEGPVERFYLPGIHAINFLLHDALDGGGTA
                     SRRIDPLGKGMAQMLLDLPVAVPPEVAALL"
     gene            8452..>9230
                     /locus_tag="VF308_04390"
     CDS             8452..>9230
                     /locus_tag="VF308_04390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012837852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEX7435921.1"
                     /translation="MAAIASTLDIGGSAFEENRAAMLALLERIRAIEARVAQTSAAAR
                     PRFEQRGQLLPRERLAVLLDPGAPFLELSTLAGLGLDTPDLERSVPGGGIIGGIGFVA
                     GVRCMVTASDSGIDAGALQAMGLDKQLRIQELALENKLPYVQLVESAGANLMKYRVED
                     FIRGGNIFRNLALLSAAGLPVVTVTHGSSTAGGAYQTGLSDYIVMVRDRSRAFLAGPP
                     LLMAATGEVATEEELGGALMHTTISGLGDYLAEDDRDALGIA"
BASE COUNT         1314 a         3154 c         3301 g         1461 t
ORIGIN      
        1 ccatcagcgc gaggaccttt tcgcggcgtg cgtcggccga cagggtcgca tcgaggccaa
       61 gcagggtgcg catgacgtcg cgcaggggtc ggtaggcggt gccgttgtcg agcggctcgc
      121 tgccggcctc ggccaccacc aagccggcct cgcgcgccgc ggacgcgaac gcttcgcaca
      181 ggcgcgactt gccgattccc ggctcgccct cgacgaggat cacggcgccg cgcgccggat
      241 cggcgcttac gcgggcgagc gcttcgagga gcacgccgag ttcggcgtcg cggccgacga
      301 gttcgccggc ctcggcgccg gcctgcgtac gccggccttg cggctcgaac accttgactc
      361 tgccgatccc cttgagcgtg acgtcgggca acgccgcgaa ggcgatcgcg ttggcggtgc
      421 gcgaggtcgg ttcgtcgcac cagaccttgc cgttcgccgc ctcggcgagc cgggccgcgc
      481 ggttcaccgt ggcgccgatc agcgcgaatt cagaccgtga cggcgcgccg cgcaaaccgg
      541 cgaagagttc gccgctcgcg acgccgaccg aaggccgctg gcccgaggcg acgagcgccg
      601 tgtgcaaggc gtgcgcggcg cggatcgagc gctcggcgtc gttggcgtag ctgctgccgg
      661 ggatgcccca ggccccgatc agcaccagct tgcccttgtc gtcgacgagg cattgcacga
      721 cgctgccgcc gcacccgtag acgctgcgtt gcatcgcctc gacgctgcgt tgcagcgcct
      781 cgagatcgcg cggcgccggg gcggcggcga acagcaccgt cgcgaagcgc agttcggcga
      841 gccagccatg cgggctcgcc cgcacgcggt tggccacgtg gcgcggcacg aacggcagga
      901 tgatcgcctc gaccggctcg ggcgcggcgg gtcgggcttc gatcggcagg ggcggcgtca
      961 cgccgtcgat cgcgaaggcg ccgttcgcga ccgcgctacc gctgcagtcg gcacgcagca
     1021 tctcgaacgc cttggcggac agcacgacct ggcctggcag agccgcatcg gcgccagcga
     1081 cctgggccag cgcatcgccg ccgagcacgg cctcccagcg atcgttgacg ccgcccagga
     1141 tcgcggtgta cagctcgccc tcgccgatgc cgatgcgcag actgaggggt atccgcgccg
     1201 cgagttcgag ttccgggacg agtgcctgca ggcgcagcgc ggtcgcggcg gcgccctgca
     1261 ccgcatcgcg cgcggagctc gcgtcggccg gccaccaggc gatcgtcgcg tcgccggcga
     1321 acttgtagac ctcgccgccg ccctcttcga tgatcgcgac gatgcgctcg aagcagcggt
     1381 tcaggatcgc ctgcatctcc tcgatgccgg cctgaccggc acgcgccttg gcctcgctca
     1441 gcgcggtgaa gccggcgatg tcggcgacga agatcgcgcc gcgcaacgcc ggcgtcagat
     1501 cgggcgccag gacgctgcgg ccggtggccc agcgccgggc gaagcgcggc acgtacgggt
     1561 ggaagtggct catcgaggca ggggagcggc gtgtgcgcga atgtaacgcc cgcggcacga
     1621 ttcgcgccgc gcctcggctc aggcacggca ttcggccagg cggcgctcga ggtacaggcg
     1681 ctcggcgcga ttgcgcacca gcgcgagggc ggcgccgtag gccgcctcgg cttcgaccgt
     1741 gcggccgagc cggcgcagca gatcggcacg cgccgcgggc agcaggtggt agcccaccag
     1801 ttcctcgcgc tcctcgagac gggcgatcca cgcaagcccg tgttcgggcc cttcggccat
     1861 cgcgagcgcg accgccgcat tgagctcgac caccgcgccc ggctgctcgc gcaggaggcc
     1921 gccgtagagg gcggcgatct gtttccagtc ggtttcatcg gcgcgggcgg cgcgcgcatg
     1981 cagcgcggcg atcgcggcct gcacctggta gggcccgcgg cgccgctgcg ccagggcggt
     2041 gtcgagcgcg gcgaggcctt cgtcgatcag gtcgtgttgc cagcgggcgc ggtcctgttc
     2101 ttccagcgga acgagggcgc catcggcgtc gacgcgggtg gcgcggcgcg catcgtggag
     2161 cagcgtcagg gcgagcaggc ccagcacctc gggctcgtcg ggcatcaatt cgaccaggag
     2221 ccgggccagg cggatcgctt cggcgcagag gtcgggacgc atcaagccgt cgttggcggt
     2281 ggtcgcgtag ccttcgttga agacgaggta gacgacgccg agcacggcct gcaggcgctc
     2341 cggcaggagc tcgcgcgagg gcaccttata gggaatgcgg gcgtcgagga tcttcttctt
     2401 cacgcgcacc agacgctgcg ccgtcgtcgc ctccggctcg aggaatgcgc gggcgatctc
     2461 gcgcgtcgac aggccgcaca gcgtgcgcag tgcgagcgcc atctgcgcgg gctgcgcgat
     2521 cgccgggtgg cagcaggtga agacgaggcg cagccgatcg tcgtcgacgc cggaaaggtg
     2581 cgccgcgagg ctgtcgttct ggtcgggttc cggcgcggcc atgtcgggcg gctcatcggt
     2641 gtagaggggg ccggtggcgc ggcgtcgcag caggtcgagg gcgcgccgcc gcgccaccgt
     2701 cgtgagccag gccgccggcg cggccggcag accttgcctc ggccaggttt cgagggcctt
     2761 ctcgaaagcg tcctgcatcg cgtcctcggc gagttcgaag tcgccgaagc gccggatcaa
     2821 gccggccagc acccgcgcgc cctcggcgcg gcagatgctg tcgatcacgg gcgtcagcat
     2881 ggcgtggcgt cggctcgatc caccggccgg ccgctcgtgc cgtcaaagcg ccatcgcggc
     2941 ccggtagagg atcagcagcg acgagatcac gatcgccagc accgtcagtc cggccccggc
     3001 ctggcgcgcc gaggtcggcc cgagcgagtg gctcaggccc cacgcgctcg cgaagcgcgc
     3061 gacgacgagc gccgcgccga gcgcgatgat gagcccgcgc caggccccgc ccgcttcggc
     3121 gaaggagagc agcaacagcg ccagcggcac gtgttcggcg aggttcgaat gggcccggat
     3181 cgactgcgca aggacggcgt tgccgccgtc tccggcattg atgttgaagc gcacgcgatt
     3241 gcggatgacc tgcacggcga gcagcgctgc cagcagcccg aggatggcgg cgcagaccgc
     3301 ggagattgtc ggaacgatca tggttgcctt tcgtgggcgc gacagcggcg ctcgggccgt
     3361 gccgccctgg gtggagggtg gctactttgc gctcggcatc gccccgaccg ggcgcacttc
     3421 gatcgagccg ccgttggcgc tcggacagcg cgccgcccaa tggaccgcct cgtcgaggtt
     3481 cggcacgtcg atgaggtagt agccgccgag ctgctccttg gtctcggcga acggtccgtc
     3541 ggtcgtcacg gtcttgccgt tcctgacccg caccgtcgtg gcgctgagcg tcggtttcag
     3601 ctcggcgccg ccgcgtatca cgccggcagc ctgcatgtcg gcgctgtact gcgtgtagtc
     3661 ggcgtacatc ttcttttgcg cctccgggtc cttgagcgtc gtcgcgaagg tcttctcgtc
     3721 gccgtagatc aggatcatgt attgcatcgt ctttcctttc gggttcgccc cgagggccgg
     3781 ggtcgatgcc atgacgcggc gcggcgcctg aatcgacagg cgcgccgaaa tatattgcgc
     3841 gccgtcggca gaacgcccgt gttgaaaaaa ggccggcccg ggatacccgg gccggccttc
     3901 gcggaggccg aaagatcgat cagatcgggg ccgattgcgg cgccgggggc agcgggacgc
     3961 cgcccgggcc ggccgcatag gtctgcggcg acaccggagc ctgctggccc accccggctt
     4021 tgctccagtc gcacacaccg ctcgggaaca cagcattcag gcgtgtcagc tgcccggcgg
     4081 tgaacgtgat gccggtgtag tcgccggcca cgagcggctt cacttggcac ttcaggatgt
     4141 tttccatcaa cgacccgccg gcgacctggt gcggcgacga atgcttcggc agccgtgggt
     4201 cggcgtcgca cacggcctgg tcgaacaccg gagtcgcgaa cgtgtcgtca ccggtcaggt
     4261 agcacaggtc gacggccgcc gcgggcttgg cggcgatcac ctgcgcttgg gtgcgctcgg
     4321 cgttcatcga cgccttcggc gcgctcgtca ccaggttcga cagccacgtg tccatcgtca
     4381 ggaacgactt caccgtcacc gcggcgatct gtgccgcagt cccgggcagc agcccggttc
     4441 cgtagcgcca catcacatgg ttgccatggt tgttggcgtt gtccgcgtcg atgcgggcac
     4501 gctccgcgaa actgcgccag atgtagtgaa tgccctgttc gtcccagccg cgcgagtcga
     4561 tgatcggcag cttggcgagg ttcacaccgc tgccgacgat gccgctcctg taggcgatgt
     4621 cgagcgcggc caggtcggca gtcgatcgcg tcgcgatcgc gttcgagtcg gcgtcgcggc
     4681 caccgatctt ctcgttcagc gtgacgaatt ccgcgggcgt gatggcaccg gcgatcagcg
     4741 cattcaaacc gtactggacg ccgacgttgt cgttggtcga gagggcgcgc gtgctgccgg
     4801 cggcgatgcc ggcggtcgtg ccccagaccg cggcggctag gtcggggtcg ccgcagcgtg
     4861 tgccggtcgg gttcgtcacc gggtcataga ccagcgcggc cggcaacagg cagttgttgc
     4921 gcggtgcgcc gttcggcgca atcgcacccg tcgcagggtt gaccagtgtc ggaatgtagt
     4981 tgccgggctt gttgttgaac ccgaacgagt tgttccacga ctggcagccg ttctggtcga
     5041 ggtgaccgtt gatcgcggtc ttcttggcgt tgatctgcgt cggggtcagg cccgccatca
     5101 gcgcggtcca ttcgggggtg acgtaggcgt tgaccagcag gacgcagtcg gccacttcga
     5161 tgccggtcgt gatcgaatcg gaaaagtcgc agcccggctg gatgccgtcg agcagacccg
     5221 ggtaggttga cgaaaccgtg ttctgcccga tcgagccgcc ggaacaaccg ttggccatcg
     5281 tgtacatgat ctcgccgtag ttggcgacga tgtgctcctt catcatcatc gtcgtctcat
     5341 tgacgaggat ccggttcgag ttgtagagcg aatcggtgag gctgttgtcg acgaccatga
     5401 agcccatgcg cagcgcgctg tcgtcgttgg tgccggtgat gcccgagacg acccagttct
     5461 gttcggtgcg gaactgcagg cgcggctggc cggtggaggc gccgtacgtg tagaagacct
     5521 tgccgttcca ttgcggctgc ggtgcggtcg ccgtccatgc cgacttggtc ggatcgaaca
     5581 gcaccgcgat gtcgtagatg ccgcggttga tcgttccgcg ctcgacccgc acgatgtacg
     5641 gcagcgtcac gccgttcgtc gtcgtcgtcg aggcgaccga ggcggccgcg gtcgtgccgg
     5701 cgacgtaagg ctggaagcac gagttggccg gtgtcgtcgg gttcgggacg gcgatcgtgg
     5761 gcgtcgggtc gggcagcacg aacgagcagc caccgtcgcc cgccgccacc gtcaccggcg
     5821 tcgtggtgcg atagaagagc ttgaactcgg tcgcgatgtt gcactgcgca tcggtggccg
     5881 tcgtcgacag gccgctcgcg tttgaggccg gctggacgcc cgatgcggcc acgggtaccg
     5941 gcgtggcgca gatccagggc gtggtctgcg cgctgagcag caccggcccg ccgatcaggt
     6001 ggttggtgac ggtgaccctg gcggcgacaa aggtgccgtt cgcggacttg gccgtgacga
     6061 cgttggcacc gttcttgagc cctgtgacta cgccgagcgt gcgtccgttg ccgagcgtcg
     6121 tgaacgctgg cgtcacgtcg gtcccgtcga catcgacctt gagctgcgtg gctattgccc
     6181 ccgcaggcag cttgacctcc atcagggccg agcccccact gatgaggtcg gctcgattcg
     6241 acagggtctg gatcgtcatc cccgcgatgg gtggtggggt gtcgtcgccc ccgcaggacg
     6301 agagcgcgag gcaaagcccc gccacagcgg ccaaagccgc aaatatccga gtgcgcatta
     6361 ctgatgtctc cagttgcccg ggggtcgtgc cctcggatcc ttgattgacg cgggcgtcgt
     6421 gcccgcctcg cgccgccgaa gtccagaata ggcgactgct gtcgcatctc caatgaaagg
     6481 gcgagttccc gttacagacg cagggacttt gccgctcctt cgccctagtc tagagactaa
     6541 agaagagcgg cgacttcagg cggcactgcc acgggcaggt cgagcagcat ctgcgccatg
     6601 cccttgccga gcgggtcgat ccgccgcgac gccgtgccgc ccccgtcgag cgcatcgtgc
     6661 agcaggaagt tgatggcgtg gatgccgggc aggtagaagc gctcgaccgg gccttcgacc
     6721 agatgcgcga agtaggcctt gaccgcttcg ggcgtcacgc gggcccagag caagggcaac
     6781 cattccgggc gcctggcgac gaggccgatg ttcgagaggt tggccttgtc gccgctgcgg
     6841 gcccaggcga gtcggaccag cgccacctcg accagcggcg ccccggtgtc ggcgacggcc
     6901 ggcggcagcg gcgcatctcc ttgcggcagg gtgccgccat gcaatccgat cgcgaccgga
     6961 tggcgatgcc cgtcgagtac gaagctgact tcgaccgcgc gcttgtcgag catgaaggcg
     7021 gccggcttga tcagcggcga caccgatggc cgcccgccgg aagcgccggt cgtgccgggc
     7081 gaccacgacg ttccggccgg cgcgatctcg cgcgcgaagg tctcgagcgc ctgcttcgaa
     7141 gggtgatcga ccaccacccg catcatcact tcgcgggcgc cggccgcgcg gctgtggggc
     7201 ccgtacagcg actccgcgcc gacgacttcg atgcggctcg cccgatagtc cgggaacccc
     7261 gcgtcgcgca ggatcgcccg ggtgcgctgc aggatcgcct cgccgctgcg ctgcgccttg
     7321 cgggccgcgt cgatgccgac gatgacgagt gtgccggcgg cgcggtagcc gtccatcgtc
     7381 gtcgccgaga ccttgtacgc gtcggtcggc gcaaagccct tcgcgccgct cacccgcacc
     7441 cggttcgcgc ccgccggctc gatcgtcacg ccccggaagt cgcagatcac gtcgggcagc
     7501 agataggcgc ccgggtcgcc gatctcgtag agcaactgct cggccaccgc ggcgcggacg
     7561 acgaggccgc cggtgccttc gggtttggtg atggtgaagc tgccgtcgct gcggcattcg
     7621 gcgatcggat agccgatcgt cgcccagtcc ggcaccgctt cccagtccgt gtacaggccg
     7681 ccagtggctt ggcagccgca ttcgatgatg tggcccgcga ggctgcccgc ggcgagcagg
     7741 tcccagtcgg tttcgcgcca gccgaactcg tgcatcaggg cccccagcgt gaccgcgctg
     7801 tcgacgcagc ggccggtgat gacgacgtcg gcgccggcat cgagcgcgcg cgcgatcggc
     7861 acggcgccga ggtaggcgtt cgcgctcagc acgcgctcgg gcagcacctg agccgtaaac
     7921 agatcgcgct gcccggatgc ccgcaggtcg gcgatctgtg cgctgacgtc gtcgccttcg
     7981 accacggcga tccgcaacgc caggccttgc gcctcggcga gccgaccgag cgcctgcgcg
     8041 caggcctgcg gattgatgcc gccggcgttg ctgacgacct tgatgccgcg ccgcaccacc
     8101 tcgccgagca ccgatttcat cgcgatgtcg acgaaatcgg tcgcgtagcc gagttcgggc
     8161 ttcttggccc gcgccgccgc gaggatcgcc atcgtcgtct cggcgaggta gtcgaagacc
     8221 aggtagtcga tttgccccga gccgacgagc tgcggcgcac cgaccgagct gtcgccccag
     8281 aaccccgaag cgccgccgat gcgcacggtc ttttcgcctg attccatcgc attcctttcg
     8341 agatccggcg agggcgtttg ccctcagttg gtgttcgggc cgactgccgc gagaatgcca
     8401 tgcccggctt gcgggcatcc gtttgatccg ccgcagcaca caacttcgtc catggcagcc
     8461 atcgcttcga ccctcgacat cggcggatcc gcgttcgaag aaaaccgggc ggcgatgctg
     8521 gccttgctgg agcgcatccg cgccatcgag gcgcgagtcg cgcagacctc ggccgcggcg
     8581 cggccgcgct tcgagcagcg cggccagctc ctgccgcgcg agcgtctcgc ggtgctgctc
     8641 gaccccggcg cgccgttcct cgagctctcg acgctcgccg gtctgggcct cgacacgccc
     8701 gacctcgagc gcagcgtgcc gggcggcggc atcatcggcg gcatcggctt cgtggccggc
     8761 gtgcgctgca tggtcacggc gtcggactcg ggcatcgacg ccggcgcgct ccaggcgatg
     8821 ggcctcgaca agcagctgcg catccaggag ctcgccctcg aaaacaagct gccgtatgtg
     8881 cagctggtcg aaagcgccgg cgccaacctg atgaagtacc gcgtcgagga tttcatccgc
     8941 ggcggcaata tctttcgcaa cctcgcgctc ctttcggccg cgggattgcc ggtcgtgacg
     9001 gtgacgcacg ggtcgtcgac cgccggcggc gcctaccaga ccggcctgtc cgactacatc
     9061 gtgatggtgc gcgaccgctc gcgtgcgttc ctggccgggc cgccgctgct gatggcggcg
     9121 accggcgagg tcgcgaccga ggaggaactc ggcggcgccc tgatgcacac gacgatctcc
     9181 ggcctcggcg actacctcgc cgaagacgac cgcgacgcgc tcggcatcgc
//
LOCUS       DASVHM010000226         3843 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_737861, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000226 DASVHM010000000
VERSION     DASVHM010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3843
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_737861"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VF308_04395"
     CDS             <1..273
                     /locus_tag="VF308_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012399519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEX7435922.1"
                     /translation="QGAEITTIEGLSQNGTLHPMQAAFRECHGLQCGFCTTGMVMSAV
                     DLLKHNPKATEDEIREGLDGNICRCTGYQNIVKSIQFCQSGATPSA"
     gene            293..2656
                     /locus_tag="VF308_04400"
     CDS             293..2656
                     /locus_tag="VF308_04400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012399518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HEX7435923.1"
                     /translation="MSVPPAASLIGQPLRRREDYRFITGAGQYTDDVVMHGQTYAVFL
                     RSPHAHARIRSIDIVAAKKAPGVVDIIVGADLVNAKVGGLPCGWLIHSKDGKPMNEPA
                     HPVLAHDKVRHVGDQVALVVAETQSQAKDAAELIEVDYEVLPAVIDTTKATTMGTAVH
                     DSVPDNVCYDWGHGNKDAVDAAFAQAAHVTTLDIVNNRLIPNAIEPRAANAVYTRHDE
                     SYTLYVANQNPHVERLLMCAFVLGLPESKVRVIAPDVGGGFGSKIFLYAEETALVWAS
                     KRVGRPIKWTAERSESFLTDAHGRDHVTKAELALDAKGMFLALRVKTIANMGAYLSTF
                     ASSVPTILYATLLAGQYKTPAIYAEVQAVFTNTAPVDAYRGAGRPEATYVVERIVEQA
                     AREMKMDPAAIRRQNFITEFPYATPVGLTYDVGNYAAHLDKAMAMADVAGFPARRTAS
                     VAKGKLRGLGYSCYIEACGIAPSNIAGALGARAGLFEAGEVRVHPTGTVTVFTGSHSH
                     GQGHETTFAQVVAAKLGIPIENVEIVHGDTGRIPFGMGTYGSRSLSVGGTAIVKAVDK
                     VIAKGKKIAAHLLEAADTDIEFENGEFKVAGTDKKVPWGSVSLTAYVPHNYPLDKLEP
                     GLNENAFYDPTNFTYPAGSYICEVEVDPDTGKTKIERFTAVDDFGNVVNPMIVAGQVH
                     GGLAQGLGQAMMEGCAYDTESGQLLTGSYMDYAMPRAMDMPRFDIATTVTACSHNPLG
                     VKGCGEAGAIGSPPAFINALTDALGVKEIAMPATAERVWRAAHPHAA"
     gene            2690..3484
                     /locus_tag="VF308_04405"
     CDS             2690..3484
                     /locus_tag="VF308_04405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEX7435924.1"
                     /translation="MYAFDYQRPASRADATAAAGAESHYLAGGQSLVQAMKLRLSQSD
                     RLIDLGGIADLKGIAVEGNAVTIGAMVTHTAVAESADVKRINPALAELAAGIGDPMVR
                     NMGTLGGSIANADPAACYPAAVLGLGATVRTNKRTIAGDAFFTGLFGTALEPGELIVS
                     VTFPAAQKAGYAKYRQPASRFALVGVFVSQGAGGVRVAVTGAKGSVFRAKQIEDALAK
                     SFTPEAAKAVKMPADGINGDMHGSAAYRAAMVSVMASRAVATALAR"
     gene            3481..>3843
                     /locus_tag="VF308_04410"
     CDS             3481..>3843
                     /locus_tag="VF308_04410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006580189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEX7435925.1"
                     /translation="MTAEGTGPSPGPSPAAALVLPGSVDAVVTLLASENYVCDRRLAT
                     AMFLSLKLQRPLFLEGEPGVGKTELAKTVARCLHTLLLRVQCYEGLDIAQTAYEWNVS
                     RQMIEIRLAEAAHGLNDES"
BASE COUNT          686 a         1333 c         1279 g          545 t
ORIGIN      
        1 cagggcgcgg agatcaccac gatcgaaggg ttgagccaga atggaacact gcatccgatg
       61 caggcggcgt ttcgcgagtg ccacgggctg cagtgcggct tctgcacgac cggcatggtg
      121 atgtcggcgg tcgacctgct caagcacaac ccgaaggcga ccgaggacga gatccgcgag
      181 ggcctcgacg gcaacatctg ccgctgcacc ggctaccaga acatcgtcaa gtcgatccag
      241 ttctgccagt ccggcgcaac cccgtcagcc taaggagagc gtcatgaccg acatgtcagt
      301 tccccccgcc gcgagcctga tcggccagcc gctgcgccgc cgcgaagact accgtttcat
      361 caccggtgcc ggccagtaca ccgacgacgt cgtgatgcac ggccagacct acgccgtctt
      421 cctgcgctcg ccgcatgcgc atgcgcgcat ccgctcgatc gacatcgtcg cggcgaagaa
      481 ggcgcccggc gtggtcgaca tcatcgtcgg cgccgacctc gtcaatgcca aggtcggcgg
      541 cctgccgtgc ggctggctga tccacagcaa ggacggcaag ccgatgaacg agcctgcgca
      601 cccggtgctc gcgcacgaca aggtgcgcca cgtcggcgac caggtcgcgc tggtggtggc
      661 ggagacccaa tcgcaggcca aggacgcggc cgaattgatc gaagtcgact acgaggtgtt
      721 gcccgcggtc atcgacacca ccaaggcgac gacgatggga acggccgtgc atgacagcgt
      781 gcccgacaac gtctgctacg actggggcca cggcaacaag gacgcggtcg acgccgcgtt
      841 cgcgcaagcc gcccatgtga cgacgctcga catcgtcaac aaccggctga tcccgaacgc
      901 gatcgagccg cgcgccgcca acgccgtcta cacgcggcac gacgagagct acacgctcta
      961 tgtcgcgaac cagaacccgc acgtcgagcg cctgctgatg tgcgccttcg tgctcggcct
     1021 gcccgagtcg aaggtgcgcg tgatcgcccc cgacgtcggc ggcggcttcg gctcgaagat
     1081 ctttctgtat gccgaggaaa ccgcgctggt ctgggccagc aagcgcgtcg gccggccgat
     1141 caagtggacc gccgagcgca gcgaatcgtt cctgaccgac gcgcacggcc gcgaccatgt
     1201 caccaaggcc gagctcgcgc tcgacgccaa gggcatgttc ctcgcgctgc gcgtcaagac
     1261 gatcgccaac atgggcgcgt atctgtcgac cttcgcgtcg agcgtgccga cgatcctgta
     1321 tgcaacgctg ctcgccggcc agtacaagac gccggcgatc tatgccgagg tgcaagcggt
     1381 cttcaccaac accgcgccgg tcgacgcata ccgcggcgcc ggacggcccg aggcgaccta
     1441 cgtcgtcgag cgcatcgtcg agcaggcggc gcgcgaaatg aagatggatc cggcggcgat
     1501 ccggcgccag aacttcatca ccgagttccc gtatgcgacg ccggtcggtc tgacctacga
     1561 cgtcggcaac tacgccgcgc acctcgacaa ggcgatggcg atggccgatg tcgcgggttt
     1621 tccggcgcgc cgcacggcgt cggtcgcgaa gggcaagctg cgcgggctcg gctactcgtg
     1681 ctacatcgaa gcatgcggca tcgcgccgtc gaacatcgcc ggtgcgctcg gggcgcgtgc
     1741 cgggcttttc gaagccggcg aggtgcgggt gcacccgacc ggcaccgtga ccgtctttac
     1801 gggctcgcac agtcacggcc agggccacga gaccacgttc gcgcaggtgg tcgccgccaa
     1861 gctcggcatc ccgatcgaga acgtcgagat cgtgcacggc gacaccggcc gcattccgtt
     1921 cggcatggga acctatggca gccggtcgct ctcggtcggc ggcacggcca tcgtgaaggc
     1981 ggtcgacaag gtgatcgcca agggcaagaa gatcgccgcg cacctgctcg aggcagccga
     2041 caccgacatc gagttcgaga acggcgaatt caaggtcgcc ggcaccgaca agaaggtgcc
     2101 atggggcagc gtctcgctca ccgcctacgt gccgcacaac tacccgctcg acaagctcga
     2161 gccggggctc aacgaaaacg cgttctacga cccgaccaac ttcacctatc cggccggcag
     2221 ctacatctgc gaggtcgagg tcgatcccga cacgggcaag acgaagatcg agcgcttcac
     2281 cgcggtcgac gacttcggca acgtcgtcaa cccgatgatc gtcgcgggcc aggttcacgg
     2341 cgggctcgcg cagggcctcg gccaggccat gatggaaggc tgcgcctacg acaccgaatc
     2401 gggccagttg ctgaccggct cgtacatgga ctacgcgatg ccgcgcgcga tggacatgcc
     2461 gcgtttcgac atcgcgacga ccgtcaccgc gtgcagccac aacccgctcg gcgtgaaggg
     2521 ctgcggcgag gccggcgcga tcggttcgcc gccggccttc atcaacgccc tgaccgacgc
     2581 gctcggcgtg aaggagatcg cgatgccggc gaccgccgaa cgggtctggc gcgctgccca
     2641 cccgcacgcc gcctgaccga acgaaccgac tttcgcgaag gaacacgaca tgtacgcatt
     2701 cgactaccag cggcccgcga gccgcgccga tgccaccgcc gctgccggcg ccgaatccca
     2761 ttaccttgcc ggcgggcaga gcctcgtgca ggcgatgaag cttcggcttt cgcagtccga
     2821 tcgcctgatc gatctcggcg gcatcgccga cctgaagggc atcgccgtgg agggcaacgc
     2881 cgtcacgatc ggcgcgatgg tcacgcacac cgcggtggcc gagtcggccg acgtgaaacg
     2941 gatcaacccg gcgctggccg agctcgccgc cggcatcggc gacccgatgg tgcgcaacat
     3001 gggcacgctc ggcggttcga tcgccaatgc cgaccctgcc gcctgctatc cggcggcggt
     3061 gctcggtctc ggcgcgacgg tgcgaaccaa caagcgcacg atcgccggcg acgcgttctt
     3121 cacgggcctc ttcgggaccg cgctcgagcc cggcgaactg atcgtttccg tcaccttccc
     3181 ggcggcgcag aaggcgggct acgcgaaata ccggcagccg gcgtcgcgct ttgcactcgt
     3241 cggcgtgttc gtgagccagg gcgcaggcgg cgtgcgggtc gcggtgacgg gcgcgaaggg
     3301 cagcgtgttt cgcgccaagc aaatcgaaga cgcgctcgcg aaaagcttca cgcccgaagc
     3361 ggcgaaggcc gtcaagatgc cggccgacgg catcaacggc gacatgcacg gctcggccgc
     3421 gtatcgtgcc gcgatggtca gcgtgatggc gtcgcgagcc gtggcgacag cgctcgcccg
     3481 gtgacggccg agggcaccgg tccgagccct ggcccgagcc ctgcggccgc gctcgtgctg
     3541 ccgggctcgg tcgatgcggt ggtgacgctg ctcgccagcg agaactacgt ctgcgaccgg
     3601 cgcctcgcga ccgcgatgtt cctgagcctg aagctgcagc gcccgctctt tctcgaaggc
     3661 gagccgggcg tcggcaagac cgaactcgcg aagaccgtcg cgcgctgcct gcacacgctc
     3721 ctgctgcgcg tgcagtgcta cgagggtctc gacatcgcgc agaccgcgta cgaatggaac
     3781 gtgtcgcggc agatgatcga gatccggctc gccgaggcgg cgcacgggct caacgacgag
     3841 agc
//
LOCUS       DASVHM010000227         3241 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_159866, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000227 DASVHM010000000
VERSION     DASVHM010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3241
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159866"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1179)
                     /locus_tag="VF308_04415"
     CDS             complement(<1..1179)
                     /locus_tag="VF308_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMIN domain-containing protein"
                     /protein_id="HEX7435926.1"
                     /translation="MAAWRSRLFAFVVVAGATLPAWSQNTIPAINSSQQAGSEVIRIE
                     LTEALTAVPAGFTVQAPPRVALDLPGVTNGLGKSTVEINQGNLRSVSIAQSGERTRLV
                     LNLKAPAGYRAQIDGKVLIVSLDNNAPATLASSSGQTTRFAESLNRTQLSLREIDFRR
                     GSDGAGRVVVELPNNQVGVDIRQQGQSLVVEFLRSSLPDNLRRRLDVTDFGTPVQSIT
                     TTQQGDRVRMLVEPRGAWEHSAYQSDNQFVLEVRAQKVDPNKLVQGAGYAGEKLSLNF
                     QNIEVRALLQVIADFTNFNVVTSDTVTGNVTLRLKDVPWDQALDIILQAKNLGLRKSG
                     NVILIAPKDELNAKEKIELEAKQQIAALEPLRTQSFQLNYAKAEDIAKGLTGQGTAGG
                     G"
     gene            complement(1200..1748)
                     /locus_tag="VF308_04420"
     CDS             complement(1200..1748)
                     /locus_tag="VF308_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilP"
                     /protein_id="HEX7435927.1"
                     /translation="MSTVESARRRSAALLVACAAVLSACAGDQDELQQWMEQQKREVK
                     PNVEPLSAPKKFNPQPYAALGAVEPFSTQKLTVALKQEARQPNSLLAAEINRRKEPLE
                     AYPVDSMAMVGSVTRNGRPYALLKVDNLLYQVKQGDYLGQNYGKIIKISETDVAYREI
                     VQDAAGEWIERNSALQLQEKAR"
     gene            complement(1745..2434)
                     /locus_tag="VF308_04425"
     CDS             complement(1745..2434)
                     /locus_tag="VF308_04425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HEX7435928.1"
                     /translation="MATKTKTANVDLNSVFEGAASQFRGLNPNEPGQWPLLPKTLTFV
                     AVAFAMVVVGWFFVLSTVHDELDAEHNKEPTLKADYRNKLAQAVNLGELRKQKLQVEE
                     YVTQLEKQLPGKAEMDALLSDINQAGLGRGLQFELFRPGQVVIKDYYAELPISIRVTG
                     RYHDIGSFAADIANLSRIVTLHNMNLVSGKDLNGSLSMDAIARTYRYLDPVEIEEVRK
                     AAVKAKPGAKP"
     gene            complement(2441..3103)
                     /locus_tag="VF308_04430"
     CDS             complement(2441..3103)
                     /locus_tag="VF308_04430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HEX7435929.1"
                     /translation="MIMINLLPHREERRRRKKIAFFAGLAVAAVVGAAIVGVWYLVVQ
                     QLISGQQQRNAYLQTEISKLDTQIKDIASLKAEIASLKARQKAVEDLQIDRNVPVHVL
                     NELVRQVPEGIYITAVKQDGQTLNVAGIAQTQERVSELLRNTAYNSEWLVKPELVESK
                     AATIQGANKEQKRLFDFAIRLTVKRPQDTPAAASQAAANAIPAAASAPASAAIAVVVK
                     KT"
     gene            complement(3100..>3241)
                     /gene="pilM"
                     /locus_tag="VF308_04435"
     CDS             complement(3100..>3241)
                     /gene="pilM"
                     /locus_tag="VF308_04435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pilus assembly protein PilM"
                     /protein_id="HEX7435930.1"
                     /translation="LTGFASMVVNPFENMKLGPAVREAKLRREASSYLTACGLAMRRF
                     AQ"
BASE COUNT          461 a         1042 c         1106 g          632 t
ORIGIN      
        1 gccgccgccc gcggtgcctt gcccggtcag acccttggcg atgtcctcgg ccttggcgta
       61 gttgagctgg aacgactgcg tgcgcagcgg ctcgagggcg gcgatctgct gcttggcctc
      121 gagctcgatc ttctccttgg cgttcagctc gtccttgggc gcgatcagga tgacgttgcc
      181 cgacttgcgc aggcccaggt tcttcgcctg caggatgatg tcgagcgcct ggtcccaggg
      241 aacgtccttc aggcgaaggg tgacgttgcc ggtgaccgta tcgctggtga cgacgttgaa
      301 gttggtgaag tcggcgatca cctgcaggag cgcgcgcacc tcgatgttct ggaagttgag
      361 cgagagcttt tcgcccgcat agccggcgcc ctggacgagc ttgttcggat cgaccttctg
      421 cgccctcacc tcgagcacga actggttgtc gctctgatag gcgctgtgct cccaggcacc
      481 gcgcggctcg accagcatgc gcacgcggtc gccctgctgc gtcgtcgtga tgctctgcac
      541 cggcgtgccg aaatcggtga cgtcgaggcg acggcgcagg ttgtcgggca ggctcgagcg
      601 gaggaactcg acgacgaggc tctggccctg ctggcggatg tcgacgccca cctgattgtt
      661 cggcagctcg acgacgacac gccctgcgcc gtcggagccg cgccggaagt cgatttcgcg
      721 cagcgacagc tgggtgcggt tgaggctttc ggcgaatcgg gtcgtctggc cgctagagct
      781 ggccagcgtc gccggcgcgt tgttgtcgag cgagacgatc agcaccttgc cgtcgatctg
      841 ggcgcgatat ccggccggcg ccttcaggtt cagaaccagg cgcgtgcgct cgcccgactg
      901 ggcgatgctg accgagcgga ggttgccctg gttgatctcg acggtcgact tgccgagccc
      961 gttggtgacg cccggcaggt cgagcgcgac gcgcggcggc gcctgcaccg tgaagcccgc
     1021 cggcaccgct gtgagcgctt cggtcagctc gatgcggatg acctcggaac ccgcctgctg
     1081 cgaactgttg atagccggga tcgtgttctg cgaccaggcc ggaagggttg cccccgccac
     1141 caccacgaat gcgaaaagtc gcgagcgcca cgcagccatc ggtttctccc acatgcttgt
     1201 catcgcgcct tctcctgaag ttggagggcg ctgttgcgct cgatccattc gccggccgcg
     1261 tcttgcacga tttcgcggta ggccacgtcg gtctcggaga tcttgatgat cttcccgtag
     1321 ttctggccaa ggtagtcgcc ttgcttgacc tggtagagca ggttgtccac tttgagcagc
     1381 gcgtaggggc gcccgttgcg agtcacgctc ccgaccatcg ccatgctgtc cacggggtag
     1441 gcctcgagcg gttccttgcg gcggttgatc tcggccgcca gcagggaatt cggctgccgc
     1501 gcctcctgct tgagggcgac ggtcagcttt tgtgtgctga acggctcgac cgcgccgagc
     1561 gccgcatacg gctggggatt gaacttcttc ggcgcggaca gcggctcgac gttgggcttg
     1621 acctcgcgct tctgctgctc catccactgc tgcagctcgt cctggtcgcc ggcgcacgcc
     1681 gacaacacgg cagcgcaggc gacgaggagt gccgccgatc ggcgccgcgc cgactcgacc
     1741 gtgctcatgg tttggctccc ggcttcgcct tgacggccgc cttcctgact tcctcgatct
     1801 cgacggggtc gaggtagcga tacgtgcggg cgatggcgtc catgctcaac gagccgttca
     1861 gatccttgcc cgacaccaga ttcatgttgt gcagcgtgac gatccgcgac aggttggcga
     1921 tgtcggcggc gaacgagccg atgtcgtgat agcgcccggt gacccggatc gagatcggca
     1981 gctcggcgta atagtccttg atcacgacct ggcccggccg gaacagctcg aactgcaggc
     2041 cacggccgag gccggcctgg ttgatgtcgg agagcagcgc gtccatctcg gccttgccgg
     2101 gcagctgctt ctcgagctgg gtgacgtatt cctcgacctg cagcttctgc ttgcgcagct
     2161 cgccgaggtt caccgcctgg gcgagcttgt tgcggtagtc cgccttcagc gtcggttcct
     2221 tgttgtgctc ggcgtcgagc tcgtcgtgca ccgtcgacag gacgaagaac cagccgacga
     2281 cgaccatggc gaacgccacg gcgacgaagg tcagcgtctt gggcagcagc ggccactggc
     2341 cgggctcgtt cgggttcagc ccgcgaaact gcgaggccgc gccttcgaag accgagttca
     2401 ggtcgacgtt ggcggtcttg gtcttggttg ccatggcagc tcaggtcttc ttgacgacga
     2461 cggcgatcgc cgccgatgcc ggcgcgctcg ccgcggccgg gatcgcattg gccgccgcct
     2521 gcgaggccgc cgcgggcgtg tcttgcgggc gcttgacggt gaggcggatc gcgaagtcga
     2581 acaggcgctt ctgctcttta ttggcgccct ggatcgtcgc ggccttgctt tcgacgagct
     2641 ccggcttgac cagccactcc gagttgtagg cggtgttgcg aagcagctcc gagacgcgct
     2701 cctgcgtctg cgcaatgccg gcgacgttga gcgtctgccc gtcctgcttg acggcggtga
     2761 tgtagatccc ctcggggacc tggcggacga gctcgttgag cacgtgcacc ggcacgttgc
     2821 ggtcgatctg gaggtcttcg accgccttct ggcgcgcctt cagcgaagcg atctcggcct
     2881 tcaggctggc gatgtccttg atctgcgtgt cgagcttgga gatctcggtc tgaaggtagg
     2941 cgttgcgctg ctgctggccg gagatcagct gctggacgac gagataccag acgccgacga
     3001 tggcggcgcc gacgacggcg gcgaccgcca gaccggcgaa gaaggcgatt ttcttgcgcc
     3061 ggcgccgctc ctcgcggtgc ggcagcaggt tgatcatgat cactgcgcaa acctccgcat
     3121 cgccaggccg cacgccgtga ggtacgacga cgcttcccgg cgcagcttgg cctcgcgcac
     3181 cgccgggccg agcttcatgt tctcgaacgg gttgacgacc atcgacgcga acccggtgag
     3241 c
//
LOCUS       DASVHM010000228         2096 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1242852, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000228 DASVHM010000000
VERSION     DASVHM010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1242852"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VF308_04440"
     CDS             complement(<1..251)
                     /locus_tag="VF308_04440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013593568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
                     decarboxylase"
                     /protein_id="HEX7435931.1"
                     /translation="MVPTLTLDRLSAVPQDEFTALLDGTYEHSPWIAEQAWSARPFAS
                     QAQLKRALVEVVRGAGREAQIALVRAHPELAGKAMMSKSL"
     gene            complement(261..1214)
                     /gene="puuE"
                     /locus_tag="VF308_04445"
     CDS             complement(261..1214)
                     /gene="puuE"
                     /locus_tag="VF308_04445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016727071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0000256 - allantoin catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="allantoinase PuuE"
                     /protein_id="HEX7435932.1"
                     /translation="MMTEDYPRDLVGYGRQPPHARWPNQARIALQFVLNYEEGGENCV
                     LHGDPASETFLSEIIGAQAFETRHLSMESMYEYGSRAGAWRILREFETRGLPLTIFGV
                     SMALQRNPELTRAFVEAGHEIACHGWRWIHYQHMSEAKERQHIDIGTRIIRDLTGGAW
                     PLGWYTGRDSPNTKRLVADHGGYEYDSDYYGDDLPFWMPVGKSDGTTLQRLIVPYTLD
                     TNDMRFASMQGFNTGDHFLAYLKDAFDVLYAEGDPGGLDRPKMLSIGMHCRILGRPAR
                     FLALQRFLDHVQRHEHVWITRRIDIARHWMQVHPASGTSAA"
     gene            complement(1228..1968)
                     /locus_tag="VF308_04450"
     CDS             complement(1228..1968)
                     /locus_tag="VF308_04450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEX7435933.1"
                     /translation="MPRPAPKLQVIKTPPKPAARAGAADGGIHATQRIAESITTAIVE
                     RRLMPGTKLAEQKIADIFKVSRTLVRQALNQLSRDKLVTLEPARGARVAEPSVEEARQ
                     VFETRHMLEAAMVRRAAAELTKAQIGELRAHLRDEEAAVRRTDVSGRTRLLADFHVVL
                     AGMLGNAVLAGMLAELVSRSSLIALMYQSAHSAEHSFDEHVAIVDALEKRDARAAVKL
                     MEEHLRHVERNLRLDPRVHDLEAVLAPR"
BASE COUNT          315 a          681 c          739 g          361 t
ORIGIN      
        1 aggctcttgc tcatcatcgc cttgccggcg agttcggggt gggcgcgaac cagcgcgatc
       61 tgcgcctcgc gtccggctcc gcgcaccacc tcgaccaggg cgcgcttgag ctgcgcctgg
      121 ctcgcgaacg gccgcgcgct ccaggcctgt tccgcgatcc acggcgaatg ctcgtaggtg
      181 ccgtccagca gcgccgtgaa ttcgtcctgc gggacggcgc tgaggcgatc cagggtcagg
      241 gtcgggacca tcagcgtctc ctaagcggcc gacgtgccgg aggccggatg cacctgcatc
      301 cagtggcggg cgatgtcgat gcgccgcgtg atccagacgt gctcgtgccg ctgcacatgg
      361 tcgagaaagc gctgcagcgc aaggaaacgc gcgggccggc cgaggatgcg gcaatgcatg
      421 ccgatcgaga gcatcttcgg ccggtcgagc ccgccgggat cgccctcggc atagagcaca
      481 tcgaacgcat ccttcaagta ggcgaggaaa tgatccccgg tgttgaagcc ctgcatcgag
      541 gcgaagcgca tgtcgttggt gtcgagcgtg tacggcacga tcaggcgctg cagggtcgtg
      601 ccgtcggact tgccgaccgg catccagaac ggcaggtcgt cgccgtaata gtcgctgtcg
      661 tattcgtagc cgccgtggtc ggcgacgagg cgcttggtgt tcgggctgtc gcgcccggtg
      721 taccagccga gcggccaggc gccgccggtc aggtcgcgga tgatccgcgt gccgatgtcg
      781 atgtgctggc gttccttggc ctcgctcatg tgctggtagt ggatccagcg ccagccatgg
      841 caggcgattt cgtggccggc ctccacgaac gcccgcgtca gctccggatt gcgctgcagc
      901 gccatcgaga cgccgaaaat cgtgagcggc aggccacgcg tctcgaactc gcgcaggatg
      961 cgccaggcgc ccgcgcgcga cccgtattcg tacatcgatt ccatcgacag gtggcgcgtc
     1021 tcgaaggcct gcgcgccgat gatctcggag agaaaggtct cggaggccgg gtcgccgtgc
     1081 agcacgcagt tctcgccgcc ttcctcgtag ttgaggacga actgcagcgc gatgcgggcc
     1141 tggttcggcc agcgcgcgtg cggcggctgg cgtccgtagc cgaccaggtc gcggggatag
     1201 tcttcggtca tcatggtcgt cgagccttca gcgcggcgcc agcaccgctt cgagatcgtg
     1261 cacgcgcggg tccaggcgca gattgcgttc gacgtggcgc aggtgctctt ccatcagctt
     1321 gacggcggcg cgggcgtcgc gcttttcgag cgcatcgacg atcgcgacgt gttcatcgaa
     1381 cgaatgttcg gccgaatgcg ccgactggta catgagcgcg atcagcgaag aacgcgagac
     1441 gagttcggcc agcatgccgg ccagcaccgc gttgccgagc atgccggcca gcacgacatg
     1501 aaaatcggcg agcaggcggg tgcgccccga gacatcggtg cggcgcaccg ccgcctcctc
     1561 gtcacgcagg tgcgcgcgca gctcgccgat ctgcgccttc gtgagctcgg ccgcggcccg
     1621 gcgcaccatc gccgcctcga gcatgtggcg cgtttcgaag acctggcgcg cttcctcgac
     1681 gcttggctcg gccacgcgcg caccgcgcgc cggctcgagc gtgacgagct tgtcgcggct
     1741 cagctggttg agcgcctggc gcacgagggt gcgcgagacc ttgaagatgt cggcgatctt
     1801 ctgctcggcg agcttggttc cgggcatcag gcggcgttcg acgatcgccg tcgtgatcga
     1861 ttcggcgatg cgctgggtcg cgtggatgcc gccgtcggcc gcgcccgccc gcgctgccgg
     1921 cttgggcggc gtcttgatca cctgcagttt cggagcgggg cgcggcatgc gattgtggcg
     1981 aaagaacgcc ggcggagctt gttttctcgc gcaaagtgta tacacttttg cgcgaacatc
     2041 aaggcctttt tccgcggccg cgaggctcgg ccgaaccgaa ggatccgcat gggcaa
//
LOCUS       DASVHM010000229         2006 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1316005, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000229 DASVHM010000000
VERSION     DASVHM010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1316005"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VF308_04455"
     CDS             <1..201
                     /locus_tag="VF308_04455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435934.1"
                     /translation="PQWIDDVSWFDSKVSVKLTRQAIKDAPAYEPATPPDRAHEVGLY
                     EHYGRAGYWAEDARRETEISRI"
     gene            209..538
                     /locus_tag="VF308_04460"
     CDS             209..538
                     /locus_tag="VF308_04460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435935.1"
                     /translation="MQAALALFAGEVLRVPQGFATLVAALADCHSPPALVLLTGPPAA
                     TDTWRAELAARYLPGVISLRLPDDTADLPAMLARPRGARPQAWVCRGSQCLPPVADIE
                     SLLKSLS"
     gene            complement(548..>2006)
                     /locus_tag="VF308_04465"
     CDS             complement(548..>2006)
                     /locus_tag="VF308_04465"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SagB/ThcOx family dehydrogenase"
                     /protein_id="HEX7435936.1"
                     /translation="SAWKQAGATCWALRCNPSSGNLHPTEAYLLIGALPGLGDAPGLY
                     HYAPREHGLERRADCNAALRTALMREFPAQAFLVGLSSIHWREAWKYGERAFRYCQHD
                     VGHAIGALRIAAATLGWSAVLLHGLADKTIDDLLGLNRAQDFAGAEREQTDAVLAVWP
                     TDPAEDGQARVQRTIPHHLDPGLALQLARERWHGTANRLSRDDPVRWEVIDEVAVATR
                     KPASEAHGFSALETLVVERNDRASTDGPVAGRIILQRRSLQACDGRTSIAADRLYRML
                     DRLMPRVELTASRRPMPWDTLAWDPTIHLGLFVHRVDGLEPGLYLLARDPTKMDRLKR
                     AMHRPFDWSTPPGCPADLPLRMLEAGDAQRLATQRSCHQDIAGDGAFSLAMIAEYQEA
                     LFTHGAWFYRRLFWETGLIGQVLYLEAEAAGVRATGIGCYFDDPVHRVFGLEDLAFQS
                     LYHFTVGGAVDDPRLTTLAPYGIDADVQGHGIDLR"
BASE COUNT          304 a          702 c          685 g          315 t
ORIGIN      
        1 ccgcaatgga tcgatgacgt gagctggttc gactcgaagg tctcggtcaa gttgacgcga
       61 caggcaatca aggacgctcc cgcgtacgaa ccggcaacgc cgccggatcg cgcgcatgag
      121 gtgggtctct atgaacacta cgggcgcgcc ggctattggg ctgaagatgc gaggcgcgaa
      181 acggagatct cccgcatcta gatccgcttt gcaagcggcg ctggcactgt ttgccggcga
      241 ggtcctgcgc gtgccgcagg gcttcgcaac gctggtcgcc gcgctggccg actgccactc
      301 gccgccagcg ttggtgctgc tcaccgggcc gcctgccgcg accgacacat ggcgcgccga
      361 actcgccgcc cgctacctgc ccggcgtgat ctcgctgcga ctgcccgacg acaccgccga
      421 cctgcccgcg atgctggccc gaccgcgcgg cgcgcgcccg caggcctggg tctgtcgcgg
      481 gtcgcagtgc ctgccgcccg tcgccgacat cgaatcgctg ctgaagtccc tgtcctgaac
      541 ctggcgttca ccgcaggtcg atgccgtggc cctgcacgtc agcgtcgatg ccgtacggcg
      601 ccagcgtggt caggcgcgga tcgtcgaccg cgccgccgac cgtgaagtga tagagcgact
      661 ggaacgcaag gtcctcgagc ccgaacaccc gatgcaccgg gtcgtcgaag tagcagccga
      721 tgcccgtggc ccgcacgcct gccgcctcgg cttcgagata caagacctgc ccgatcagcc
      781 cggtttccca gaacagccgt cgatagaacc aggccccgtg cgtgaataac gcctcctgat
      841 actcggcgat catggccagc gagaaggcgc cgtcgcctgc aatgtcctgg tggcagctgc
      901 gctgcgtcgc aagccgctgc gcgtcgccgg cctcgagcat tcgcagcggc aaatcggccg
      961 gacagcccgg cggcgtcgac cagtcgaacg gccggtgcat cgcgcgcttc agccggtcca
     1021 tcttggtggg gtcgcgagcg agcaggtaca gcccgggctc gagcccatcg acgcgatgaa
     1081 cgaacaagcc gaggtggatg gtcggatccc aggccaatgt gtcccagggc atcgggcgcc
     1141 ggctcgctgt cagttcgacg cgcggcatca accggtcgag catccggtac aagcgatcgg
     1201 ctgcgatcga cgtgcggccg tcgcaggcct gcaggcttcg ccgttgcagg atgatccgtc
     1261 cggccacggg gccgtcggtg cttgcgcggt cgttgcgctc gaccaccagc gtttcgagcg
     1321 cgctgaaccc gtgcgcctcg ctggccggtt tgcgtgtggc gacggcgact tcgtcgatga
     1381 cctcccagcg caccgggtcg tcgcggctga gccggttggc ggtgccatgc caacgctccc
     1441 gagccaattg gagcgcgagg cccggatcga ggtggtgcgg aatcgtgcgc tgcacgcggg
     1501 cctgcccgtc ctcggcgggg tcggtcggcc agaccgccag cacggcatcc gtttgctcgc
     1561 gctcggcgcc tgcgaaatcc tgggctcgat tcagaccgag caggtcgtcg atcgttttgt
     1621 cggccaggcc atgcagcagc actgcgctcc agcccagggt cgcggcggcg atccgcagcg
     1681 cgccgatcgc gtgtccgacg tcatgctggc aatagcggaa ggcacgttcg ccgtacttcc
     1741 acgcctcgcg ccagtggatc gacgacaggc cgaccagaaa cgcctgcgcc gggaactcgc
     1801 gcatcagcgc cgtgcgcagc gcagcgttgc agtccgctcg ccgttccagc ccgtgctcgc
     1861 gcggcgcgta gtggtacagc cccggcgcgt cgccaagtcc gggcagcgcg ccgatcagca
     1921 ggtaggcttc ggtcggatgc aggttgccgc tcgacggatt gcagcgcagc gcccagcacg
     1981 tggcgccggc ttgcttccag gcggat
//
LOCUS       DASVHM010000230         1743 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_665848, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000230 DASVHM010000000
VERSION     DASVHM010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_665848"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..773
                     /gene="trmB"
                     /locus_tag="VF308_04470"
     CDS             72..773
                     /gene="trmB"
                     /locus_tag="VF308_04470"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEX7435937.1"
                     /translation="MTARTPLDESPPLRRAIRSFVLRAGRMGPGQARALAELVPRFML
                     PFVPTVTDFAALFGRRAPLVLEIGFGMGDATAAIAQALPDTDFLGVEVHSPGVGALLK
                     RIGELGLDNVRVIRHDAVEVLESMIAPQSLAGVHVFFPDPWHKARHNKRRLIQPAFVR
                     LLASHLAPGGTLHCATDWEPYAAQMLDVMTAEPALRNSAEGFAAKPAYRPLTKFENRG
                     LGLGHGVWDLVFEKR"
     gene            complement(785..1606)
                     /locus_tag="VF308_04475"
     CDS             complement(785..1606)
                     /locus_tag="VF308_04475"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011804585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEX7435938.1"
                     /translation="MDFMLFVKAAIMGIVEGLTEFLPVSSTGHLILAGSLLGFTDEKS
                     KVFDIAIQSGAIFAVILVYRQRLRETLAGLGSEPRARRFALNVAVAFVPAVILGLLFG
                     KAIKAHLFTPLVVATTFILGAFVILWAERRTHTARIETVDDMRPLDALWVGLAQCLAL
                     VPGTSRSGATIIGGMLLGLSRKAATEFSFFLSMPTLIGAGLYSLWKERALLSVADIPL
                     FGVGLVFSFLAAWVCVRWLLRYISTHTFVPFAWYRIGFGIVVLATAYSGLVTWAD"
BASE COUNT          309 a          594 c          585 g          255 t
ORIGIN      
        1 atcgaaccct cgtatgaagc ttgggaagct gccgttctac cattgaacta cacccgcagc
       61 agcttcgaat tatgaccgct cggacccccc tcgacgagtc cccgccgctg cgccgcgcga
      121 tccgcagttt cgtgcttcgc gccgggcgca tggggccggg ccaggcgcgt gcgctggccg
      181 aactcgtgcc acgcttcatg ctgccgttcg tgccgacagt caccgatttc gcagcgcttt
      241 tcgggcgccg cgcgcccctc gtgctggaga tcggtttcgg catgggcgac gcgaccgccg
      301 cgatcgcgca ggccttgccg gacaccgatt ttctcggcgt cgaggtccat tcgccggggg
      361 tcggcgcgct gctcaagcgc atcggcgaac tcggcctcga caacgtgcgc gtgatccggc
      421 acgacgcggt cgaagtgctc gagtccatga tcgcgccgca gtcgctcgcc ggcgtgcacg
      481 tcttctttcc ggatccgtgg cacaaggcca ggcacaacaa gcgccgcctg atccagccgg
      541 cgttcgtgcg gctgctggcg agccacctcg cccccggcgg cacgctgcat tgcgcgaccg
      601 actgggagcc ctatgccgcg cagatgctcg atgtgatgac ggccgagccg gccctgcgca
      661 acagcgccga agggtttgcc gcgaagccgg cctaccggcc gctgacgaaa ttcgagaacc
      721 gcggcctagg gctcggccac ggtgtctggg atctggtgtt cgaaaaacgc tgagcgccgc
      781 ggcctcaatc ggcccacgtc acgagcccgc tgtaggcggt cgccagcacg acgatcccga
      841 atccgatccg gtaccaggcg aacggcacga aggtgtgggt cgagatgtag cgcagcagcc
      901 agcgcacgca gacccaggcg gccaggaacg agaacacgag gccgacgccg aagagcggga
      961 tgtcggccac cgacagcaac gcacgctcct tccagaggct gtagaggccg gcgccgatca
     1021 aggtcggcat cgacaggaag aagctgaact cggtcgccgc cttgcggctc aggccgagca
     1081 gcatgccgcc gatgatggtc gcgcccgagc ggcttgttcc gggcacgagc gccaggcatt
     1141 gcgcgaggcc aacccacagc gcatccagcg gccgcatgtc gtcgacggtc tcgatgcgcg
     1201 ccgtgtgcgt gcggcgttcg gcccacagga tgacgaaggc gccgaggatg aaggtcgtcg
     1261 cgacgacgag cggcgtgaag agatgcgcct tgatcgcctt gccgaagagc aggccgagga
     1321 tcaccgccgg cacgaaggcg accgcgacat tgagcgcgaa gcggcgcgcg cgcggctcgc
     1381 tgccgagtcc ggccagcgtc tcgcgcagcc gctgccgata gaccaggatc accgcgaaga
     1441 tcgcgccgct ctggatcgcg atgtcgaaga ccttgctctt ctcgtcggtg aagccgagca
     1501 gcgagccggc gaggatgagg tggccggtgc tcgagaccgg gagaaactcg gtcaggcctt
     1561 cgacgatccc cataatcgcg gccttgacga acagcatgaa atccaagtcg gctccgatca
     1621 cctgggcaaa agacccggca tcttaacgac gccgacctgc ggtctgcaga ccgtgacgcg
     1681 gatcaccgag ccgaacgtcg ctttcggagc gtagcgcacg agcggctcgc agcgccccgc
     1741 acg
//
LOCUS       DASVHM010000231         2514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_738339, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000231 DASVHM010000000
VERSION     DASVHM010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2514
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_738339"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..1073
                     /locus_tag="VF308_04480"
     CDS             6..1073
                     /locus_tag="VF308_04480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013595955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate import ATP-binding
                     protein UgpC"
                     /protein_id="HEX7435939.1"
                     /translation="MGAISIRNVVKRYGTGAKANPVIHGVNAEIADGEFVVVVGPSGC
                     GKSTLLRMVAGLEEISSGEIAISGRVVNDVEPSERDIAMVFQNYALYPHMSVFDNMAY
                     GLKIAKVPLAEIRQRVDKAAKILELEPYLARKPRELSGGQRQRVAMGRAIVRQPQVFL
                     FDEPLSNLDAKLRAQTRLEIQKLHNELHVTSLFVTHDQVEAMTLAERMIVMNAGRMEQ
                     IGTPDEVYHRPATTFVAGFIGSPPMNLIKGQADGSHFGCAGQTLALPAAAPRSGELIL
                     GVRPEHTELRRNGAAGWPMRVEALEMLGAERLVYGGVGGMLFTVRVDATDLPPKIGDT
                     VSLQVSPQHLHWFDAATLQRL"
     gene            1070..1825
                     /gene="ugpQ"
                     /locus_tag="VF308_04485"
     CDS             1070..1825
                     /gene="ugpQ"
                     /locus_tag="VF308_04485"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007833276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEX7435940.1"
                     /translation="MSAAAWPYPLWIAHRGAGRLAPENTLAAFRVGAAHGFRAFECDV
                     KLSADGVPFLLHDATLRRTTSGDGPASARTWGELSRLDAGAWHSRSFAGEPPPTLEAI
                     ARFCIGNGFALDIEIKPSPGREAETGRIVALEAARLWAAARVPPLLSSFRADALDAAR
                     EAAAGLPRALLLDTLHPGWFEQARALGCAAVVTAYPLLDELLVTQLHAVDMRAIVYTV
                     NDPAEVRRLCGFGIDGIVTDAVDRFSAAGAGLV"
     gene            complement(1799..2440)
                     /locus_tag="VF308_04490"
     CDS             complement(1799..2440)
                     /locus_tag="VF308_04490"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEX7435941.1"
                     /translation="MDPLLIDFPERIETERLVLRCPRPGDGPALSAAVCASLDALRPW
                     ILWAKDAPSAEESEADCRRMQAKFLLREDLVMLIFEKGSEGPEGPVLGAAGLHRIDWA
                     ARCFEIGYWRRIGLDGLGIASEAVTALARLAFDRLQARRVEIRMDDDNERSWKLAERT
                     GFTFEALLRLNAITPLGEPRSTRVYARVRGVEEPESDAPEVRPAGSDESGTRR"
BASE COUNT          393 a          905 c          832 g          384 t
ORIGIN      
        1 aaaccatggg cgccatttcg atccgcaacg tcgtcaagcg ctatggcacg ggggccaagg
       61 cgaaccccgt gatccacggc gtcaatgccg agatcgccga cggcgaattc gtggtcgtcg
      121 tcggcccctc gggctgcggc aaatcgacct tgctgcgcat ggtggcgggg ctcgaagaga
      181 tttcgagcgg cgagatcgcc atttccggcc gcgtcgtcaa cgacgtggag ccgtcggagc
      241 gcgacatcgc gatggtgttc cagaactacg cgctctatcc gcacatgtcc gtgttcgaca
      301 acatggccta cgggctcaag atcgcgaaag tgccgctggc cgagatcagg cagcgcgtcg
      361 acaaggccgc caagattctc gaactggagc cctacctcgc gcgcaaaccg cgcgagctct
      421 ccggtggcca gcgccagcgc gtcgcgatgg gccgcgcgat cgtgcgccag cctcaggtgt
      481 tcctgttcga cgagccgctt tccaacctcg acgcgaaact gcgcgcgcag acccggctcg
      541 aaatccagaa gctccacaac gagctgcacg tgacctcgct tttcgtcacc cacgaccagg
      601 tcgaggcgat gacgctggcc gagcgcatga tcgtgatgaa cgccggccgc atggagcaga
      661 ttggcacgcc cgacgaggtc tatcaccggc cggccaccac cttcgtcgcc ggcttcatcg
      721 gctcgccccc gatgaacctc atcaaaggcc aggccgacgg atcgcacttc ggctgcgcgg
      781 ggcagaccct ggcgttgccg gccgcggcgc cgcgctccgg cgagctgatt ctcggcgtgc
      841 ggcccgagca cacggaactg cgccgcaacg gcgctgccgg ttggccgatg cgggtcgagg
      901 cgctcgaaat gctcggcgcc gaacggctgg tctatggcgg ggtcggcggc atgctcttca
      961 cggtgcgcgt cgacgcgacc gacctgccgc cgaagatcgg cgacaccgtc tcgctgcaag
     1021 tctcgccgca gcaccttcac tggttcgacg ccgcgacgct gcaacgccta tgagcgcggc
     1081 ggcgtggcct tatccgctct ggatcgccca tcgcggcgcc ggaagactgg cacccgagaa
     1141 caccctggcg gcgtttcggg tgggcgcggc gcacggcttc cgggccttcg aatgcgacgt
     1201 caaactgagc gccgatgggg tgccgttcct gctgcacgac gccacactgc ggcgaaccac
     1261 atcgggcgat ggcccggcaa gcgcgcgaac ctggggcgag ctctcgcgac tcgacgccgg
     1321 tgcctggcac agccgatcct tcgccggcga gccgccgccg acgctggaag cgatcgcgcg
     1381 cttttgcatc ggcaacggct tcgcgctcga catcgagatc aagccgtctc ccggacgcga
     1441 ggccgaaacc ggccgcatcg tcgcgctcga agcggcccgg ctctgggccg cggctcgggt
     1501 gccgcccttg ttgagttcgt ttcgagccga tgcgctggac gccgcgcgcg aagccgcggc
     1561 cgggctgccg cgcgcgctgc tgctcgacac cttgcacccg ggctggttcg agcaggccag
     1621 ggccctgggc tgcgccgcgg tcgtgaccgc ctatccgctg ttggacgagc tgctggtcac
     1681 gcaactgcat gccgtcgaca tgcgggcgat cgtctacacc gtcaacgacc cggcggaagt
     1741 ccggcgtctt tgcgggttcg gcatcgacgg catcgtcacc gatgcggtcg accgcttctc
     1801 agcggcgggt gccggactcg tctgatcccg ccgggcgcac ctccggcgcg tcggactcgg
     1861 gctcctccac gccgcggacc cgcgcataga cccgcgtgct gcgcggctcg ccgagcggcg
     1921 tgatcgcatt caagcgcagc aacgcctcga aggtgaagcc ggtgcgctcg gccagcttcc
     1981 agctgcgctc gttgtcgtca tccatccgga tctcgacgcg gcgcgcctgc aggcgatcga
     2041 acgccaggcg tgccagcgcg gtcaccgctt cgctggcgat gcccaggccg tcgagcccga
     2101 ttcgacgcca atagccgatc tcgaaacaac gcgcggccca gtcgatccta tgcagaccgg
     2161 cggcgccgag cacggggccc tccgggcctt cggagccctt ctcgaaaatc agcatcacga
     2221 ggtcttcgcg cagcaggaac ttggcctgca tgcgacggca gtcggcttcc gactcctcgg
     2281 cgctgggcgc atccttggcc cagaggatcc agggccgcag cgcgtcgagg ctggcgcaca
     2341 ccgccgcgct cagcgccggc ccatcgcccg gcctcggaca gcgcagcacc aggcgctcgg
     2401 tttcgatgcg ctcggggaag tcgatcagca aaggatccac gaggattccc cggacgcctc
     2461 aggtcacgtc catcaccgcg cgcggtcgca cccccgcctc ggcgccgagc caat
//
LOCUS       DASVHM010000232         2519 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_160395, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000232 DASVHM010000000
VERSION     DASVHM010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160395"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2519
                     /locus_tag="VF308_04495"
     CDS             <1..>2519
                     /locus_tag="VF308_04495"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019654250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEX7435942.1"
                     /translation="QIVVERQLLEAGESRHDVGRKNFVAKVWEWKEQSGSTITRQMRR
                     LGDSVAWPHEYFTMDERLSAVVTDTFVQLYEEGLIYRGKRLVNWDPVLKSAVSDLEVE
                     SEEEDGSLWHIRYPLADGSGHLTVATTRPETMLGDTAVMVHPDDERYVGLIGKAVLLP
                     ITGRRVPVIADVYVDREFGTGVVKVTPGHDANDYAVAQRHPEIGVLNIFTLEAKIVGD
                     EPEAGMASIPAALHGLDRFEARRRIVARLEELGLLDKVEKHRLPVPRCVRTGQIVEKL
                     LTDQWFVAMSEPGPDGKSFAERAIEVVADGAVRFVPAQWVNTYNQWMHNIQDWCISRQ
                     LWWGHQIPAWYDEEGEIYVARNEGKAEQKWLLEIESRIAAARAAEHESQLQTLENRRA
                     AGPQLRRDEDVLDTWYSSALVPFSSLGWPKQTQELELFLPSSVLVTGYDIIFFWVARM
                     IMMTLQFTGKVPFRDVYIHGLVRDAQGRRMSKSEGNVLDPVDLIDGIALEPLLEKRAT
                     GLRRPETAPRVRKDTAAEFPHGIPGFGADALRFTFASLASLGRNINFDSKRCEGYRNF
                     CNKLWNATRFVLMNCEGADCGLAEHTKAECAPGEPFHNYLRFSAADRWISGELQRVEA
                     AVEKGFAEYRLDNVANAIYSFVWDEYCDWYLEIAKVQIQGRDDAARRATRRTLIRVLE
                     TVLRLMHPVTPFITAELWERVAPVAGRSIAGSTHGIVVAPYPKPQREKVDPDADAWVA
                     KLKAIVGSCRNLRSEMKLSPAERVPLYACGDAGFVHEAAPLLRALAKLSDVKVFADDA
                     AFEQATANAAAAAVGGVRLALHVEVDVAAEQGRLVKEIRRL"
BASE COUNT          438 a          849 c          860 g          372 t
ORIGIN      
        1 gcaaatcgtg gtggaacgcc agctgctgga ggccggggag agccgccacg acgtcgggcg
       61 caagaacttc gtcgccaagg tctgggaatg gaaggaacag agcggctcga cgatcacgcg
      121 gcagatgcgc cgcctcggcg attcggtggc ctggccgcac gagtatttca cgatggacga
      181 gcggctttca gccgtcgtca ccgacacctt cgtgcagctg tacgaagagg ggctcatcta
      241 ccgcggcaag cgcctcgtca actgggatcc ggtcctgaag tcggccgtct cggacctcga
      301 ggtcgagagc gaggaggagg acggctcgct ctggcacatc cgctacccgc tcgccgacgg
      361 cagcggccac ctcacggtcg cgacgacgcg gccggaaacg atgctcggcg acaccgcggt
      421 gatggtgcac ccggacgacg agcgctacgt cggtctgatc ggcaaggccg tgctgctgcc
      481 gatcaccggc cggcgcgtgc cggtgatcgc cgatgtctat gtcgatcgcg aattcggcac
      541 cggcgtcgtg aaggtcacgc cgggccacga cgccaacgac tatgcggtcg cgcagcgcca
      601 cccggagatc ggggtcctca acatcttcac gctcgaggcg aagatcgtcg gcgacgaacc
      661 agaggccggc atggcttcga tcccggcggc gctgcatggg ctcgaccgct tcgaggcccg
      721 gcgccgcatc gtcgcccgac tcgaggaact gggcctgctc gacaaggtgg agaagcaccg
      781 gctgccggtc ccgcgctgcg tgcgcaccgg acagatcgtc gagaagttgc tgaccgacca
      841 gtggttcgtc gcgatgtccg aacccggccc cgacggcaag agcttcgccg agcgcgcgat
      901 cgaggtggtc gcggacggcg ccgtccggtt cgtccccgcg cagtgggtca acacctacaa
      961 ccagtggatg cacaacatcc aggactggtg catctcgcgc cagctctggt gggggcacca
     1021 gatccccgcc tggtatgacg aggaaggcga gatctacgtc gcccgcaacg agggcaaggc
     1081 ggagcagaag tggctgctcg agatcgagag ccgcatcgcc gcggcgcgtg ccgcagagca
     1141 cgaatcgcaa ctgcagacgc tcgagaaccg gcgcgccgcg ggcccgcagc tgcgccgaga
     1201 cgaggacgtg ctcgacacct ggtattcctc ggcgctggtg ccgttctcgt cgctcggctg
     1261 gcccaagcag acccaggagc tcgagctctt cctgccgtcg tcggtgctcg tcaccggcta
     1321 cgacatcatc ttcttctggg tcgcccgaat gatcatgatg acgctgcagt tcacgggcaa
     1381 agtgccgttt cgcgacgtct acatccacgg cctggtgcgc gacgcgcaag gcaggcggat
     1441 gagcaagtcg gaaggcaacg tgctcgatcc ggtcgacctg atcgacggca tcgcgctcga
     1501 gccgctgctc gagaagcgcg cgaccgggct gcgtcgcccc gagaccgcgc cgcgcgtgag
     1561 gaaggacacg gcggccgagt ttccgcacgg catccccggc ttcggcgccg atgcgctgcg
     1621 cttcacgttc gcctcgctcg ccagcctcgg ccgcaacatc aacttcgact cgaagcgctg
     1681 cgagggctac cgaaacttct gcaacaagct ctggaacgcg acgcgcttcg tgctgatgaa
     1741 ctgcgagggc gccgactgcg ggctcgcgga gcacaccaag gccgagtgcg cacccggaga
     1801 accgttccac aactacctcc gcttctcggc ggccgaccgc tggatcagcg gcgaactgca
     1861 gagggtcgag gccgcggtcg agaagggctt cgccgagtac cggctcgaca acgtcgccaa
     1921 cgcgatctat tcgttcgtct gggacgagta ctgcgactgg tacctcgaaa tcgcgaaggt
     1981 gcagatccag ggccgcgacg acgcggcccg gcgcgcgacc cggcgcacgc tgatccgcgt
     2041 gctcgaaacg gtgctgcgcc tgatgcaccc ggtcacgccc ttcatcaccg ccgagctgtg
     2101 ggagcgggtc gcgccggtgg cgggccgatc catcgcgggg tcgacgcacg gcatcgtcgt
     2161 cgcgccctat ccgaagccgc aacgcgaaaa ggtcgatccg gatgccgatg cctgggttgc
     2221 caaactgaag gcgatcgtcg gcagctgccg caacctgcgc agtgagatga agctgtcgcc
     2281 ggccgagcgc gtgcccctct acgcgtgcgg cgatgccggc ttcgtgcacg aagccgcacc
     2341 cttgctgcgg gcgctcgcga aactctccga cgtcaaggta ttcgccgacg acgcagcgtt
     2401 cgagcaggcc acggcgaacg cggcagccgc ggccgtcggc ggggtacgcc tcgcgctgca
     2461 cgtcgaggtc gacgtggccg ccgaacaggg tcggctcgtc aaggagatca ggcgcctcg
//
LOCUS       DASVHM010000233         5971 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1243436, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000233 DASVHM010000000
VERSION     DASVHM010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5971
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1243436"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..414)
                     /locus_tag="VF308_04500"
     CDS             complement(<1..414)
                     /locus_tag="VF308_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435943.1"
                     /translation="MLFRQAGIHHTDYAGDRELFPIPADRWMVVGLLALGVTAPLTVS
                     SLTLSSYLLPWLVWTAATLGLNVILGWAGQFHFGYAAIMGIGAYAAVHGARHGIPWEI
                     AVVLGGLAATVIGSTFAFAALRVKGLYLALSTLALQ"
     gene            complement(424..1311)
                     /locus_tag="VF308_04505"
     CDS             complement(424..1311)
                     /locus_tag="VF308_04505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7435944.1"
                     /translation="MDWTLLLELGVNGAMAGLMYSLVALGIVLIYKSSSVPNLAQGAM
                     TMLGAYVVLEVARYLHAPMWVAIPIAMLLMFGVGRGIERAALRRLAGRPVIMILMMTL
                     GLDIFLRGTALTIWGGSGRPMPIGISDEPLFLGPLLLNRNYAAGAAVALALFGVFVLF
                     FRTRRGVVLRAISDDYTASWSVGISVERGVALSWAMSSVVATTAGVLWGSVQGVDQSL
                     SLLLLKGVTVAVLGGLDSIGGAMLAGLLLGVFESVASGYLDRLLGGGSRDLVVAATLI
                     LTIVIRPHGLFGRHDIERI"
     gene            complement(1311..3248)
                     /locus_tag="VF308_04510"
     CDS             complement(1311..3248)
                     /locus_tag="VF308_04510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7435945.1"
                     /translation="MSRTEPGAPGGTWNFETDTTLVRVVAANARAVPDRPAMREKDLG
                     VWQETSWSQVLEAVLCCAAGLEDLGFGAEDAVLVLGDNRPRLYMGMLAAGALRGYAMP
                     VFPDATPDEIRHFTHEARARFVLAEDQEQVDKILDLREQDATIEHIVYDDPRGLADYP
                     QPGLVSWDGLVARGAQRLAETAGLREALIARAQPDGPAVFVHSSGTTGKPKGVVLTHR
                     NLLAGVRNAYRAGAFRFDEEILAYLPMAWVGDFAMTMGAGMALRFTINIPERQETVLH
                     NLREIAPTFYLAAPRSWDNMLTTIQVRMEDSTPLKKWVYDLFMNAALAAERRKLEGGA
                     PTLRERLLRPLGEWLVCGPIKDQLGLTRLRNAFTGGEAMGEDTFVFYRALGVKLRQLY
                     GQTESSAFNAMQDVNEVRLHTVGRPLPGVDVRISDEGEILVRSGSVFGGYFKLPEATH
                     EALTDGWLRTGDAGYVEPDGHLVVLGRLSEVVHTAQGERYIPNYIENRLKFSPYIKDV
                     AVLGSGRDTLAAIVCIDKEPVGHWAEVRGISYMSYADLSQRPEVLELVGTAVRRVNAT
                     LPDGLKLRRFVSLHKEFDPDDGEITRTRKLRRNVVEERYQPIIEAIYGGRKEVTMKAQ
                     ITSESGEIGVIERTLRIQEVG"
     gene            complement(3235..4038)
                     /locus_tag="VF308_04515"
     CDS             complement(3235..4038)
                     /locus_tag="VF308_04515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7435946.1"
                     /translation="MTQTPVSAAPPPVLECRAVERRFGGLVALTGVDLRIERGEIFGL
                     VGPNGSGKTTLTNAITGFYPPQRGSILLNGHDITGLAPHRVARLGVARTFQNLALFNG
                     MTVLDNILLGRHVHMRPSVFRTLCYRWLARPDEIRHRAAVEEVIDFLQLESVRDDLVD
                     SIPIGLKKRVELARALVAEPSFLVLDEPMAGMNQEEKEYMARFVLDARDERGVTVLLI
                     EHHMDVITGICDRMTVLSYGEMIGTGVPAEVIADPRVIEAYLGRAHVAH"
     gene            complement(4067..4753)
                     /locus_tag="VF308_04520"
     CDS             complement(4067..4753)
                     /locus_tag="VF308_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013721918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX7435947.1"
                     /translation="MPRPARSELPGARRKPAAKPRKSPVAAAEPAPEATRDQILAHAA
                     RLFRHQGYAATTLRQIAEAAGIKAGSIYYHFGSKDEILGVVLDAGIDAVMTAVKSRIA
                     ALPADANYRARIAAAIDGHLYGLLHHGDFTSANIRIYGQIPPAAKARHQLVRRTYAQY
                     WDDLLQAALAAGALRKDTNLAVIRLFLIGALNWTVEWYNPKRGSFKSFSSQITDIIFD
                     GIAPRGGARR"
     gene            complement(4800..5597)
                     /locus_tag="VF308_04525"
     CDS             complement(4800..5597)
                     /locus_tag="VF308_04525"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7435948.1"
                     /translation="MDLGLKNQSVVVTGGGSNIGRAIVLAFAREGARITIGDIDPVQA
                     EKTAAEARRVGSPGVQVVPTDVTDLAQVQAMFQAADDRFGPVDTLVNNVGWDKLMFFT
                     QTTPELWQKIIQINYVGVLNCTKVALETMIRRNAGAIVSISSDASRTGEPREAVYGGM
                     KAAINSFMKTIAKENGRYGIRCNVVCPGLTLPEAEGDVGGTSMWHDPTGMFTPEQVEK
                     AAKALPLRKAGRPSDIANAVMFFASPIAAGHVTGQVLSVSGGYSMVG"
     gene            complement(5716..>5971)
                     /locus_tag="VF308_04530"
     CDS             complement(5716..>5971)
                     /locus_tag="VF308_04530"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010925885.1"
                     /note="Catalyzes the reversible hydration of unsaturated
                     fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HEX7435949.1"
                     /translation="LVSLCVPQAELMERAMKVADKLAAGSQTAIRYTKKSLNNWMHVA
                     RPIFDNSLALEMLCFLGDDAPHGVAAVREKRAPDFPSARV"
BASE COUNT          907 a         2015 c         2108 g          941 t
ORIGIN      
        1 ctgcagtgcg agcgtgctga gggcgaggta gaggcccttg acgcgcagcg ccgcgaacgc
       61 gaatgtgctg ccgatcaccg tggcggcgag cccgccgagc accaccgcga tctcccaggg
      121 tatgccgtgg cgggcgccgt gcaccgcggc gtaggcgccg atgcccatga tcgccgcata
      181 gccgaagtgg aactgcccgg cccagccgag gattacattg aggccgagcg tcgccgcggt
      241 ccagaccagc cagggcagca ggtagctgct gagcgtgagc gagctgaccg tgagcggcgc
      301 ggtgacgccg agggccagca ggccgacgac catccagcgg tcggcgggaa tcggaaacag
      361 ctcccggtcg ccggcgtagt cggtgtgatg gattccggcc tggcggaaca gcatgggtgg
      421 cccctagatt ctctcgatgt cgtggcggcc gaagaggccg tgcgggcgga tcacgatcgt
      481 caggatcaag gtcgccgcga cgacgaggtc gcggctgccg ccgccgagca gccggtcgag
      541 gtagcccgag gcgacgcttt cgaagacgcc gagcagcagc ccggcgagca tggctccgcc
      601 gatgctgtcg agcccgccga gcacggccac cgtaacaccc ttgaggagca ggagcgagag
      661 cgactggtcg acgccctgga ccgaacccca gagcacgccg gcggtggttg cgaccaccga
      721 cgacatcgcc cacgacagcg ccacgccgcg ctcgaccgag atgccgaccg accaggacgc
      781 ggtgtagtcg tcggagatcg cgcgcagcac cacgccgcgg cgggtgcgga agaacagcac
      841 gaaaacgccg aagagcgcga gcgcgaccgc ggcgccggcc gcgtagttgc gattgagcag
      901 cagcggcccg aggaagagcg gctcgtcgct gatgccgatc ggcatcggcc ggccgctgcc
      961 gccccagatc gtgagcgcgg tgccgcgcag gaagatgtcg aggccgagcg tcatcatcag
     1021 gatcatgatg accggccggc ccgccaggcg gcgcagcgcg gcccgttcga tccccctgcc
     1081 gaccccgaac atcagcagca tcgcgatcgg gatcgcgacc cacatcggcg catggaggta
     1141 acgcgcgacc tcgagcacga cgtaggcgcc gagcatcgtc atcgcgccct gcgccaggtt
     1201 gggcaccgag gacgacttgt agatcaacac gatgccgagg gcgaccagcg agtacatgag
     1261 gccggccatc gcgccgttga cgccgagttc gagcagcagg gtccagtcca tcacccgacc
     1321 tcctggatgc gcagcgtgcg ctcgatgacg ccgatctcgc ccgactcgga ggtgatctgc
     1381 gccttcatcg tcacctcctt gcgtccgccg tagatggcct cgatgatcgg ctggtagcgt
     1441 tcttcgacga cgttgcggcg gagcttgcgg gtgcgcgtga tctcgccgtc gtcggggtcg
     1501 aattccttgt gcaggctgac gaagcggcgc agcttcaggc catccggcag cgtcgcgttg
     1561 actctgcgga ccgcggtgcc gacgagctcg agcacctcgg gccgctgcga caggtcggca
     1621 tacgacatgt acgagatgcc acgcacttcg gcccagtggc cgaccggctc cttgtcgatg
     1681 cagacgatcg cggcgagcgt gtcgcgtccg cttcccagca ccgcgacgtc cttgatgtaa
     1741 gggctgaact tgagccggtt ttcgatgtag ttcgggatgt agcgctcgcc ctgcgcggtg
     1801 tgcacgacct cggagagccg gcccagcacg acgaggtggc cgtcgggttc gacatagccg
     1861 gcgtcgccgg tgcgcagcca cccgtcggtg agcgcttcgt gggtggcttc gggaagcttg
     1921 aaatagccgc cgaagacgct tcccgaacgc accaggattt cgccctcgtc gctgatccgc
     1981 acgtcgaccc cgggcagcgg ccggccgacc gtgtgcaggc gcacctcgtt gacgtcctgc
     2041 atcgcgttga aggcgctgct ttcggtctgg ccgtagagct gacgcagctt gacgccgagc
     2101 gcgcggtaga agacgaaagt gtcctcgccc atcgcctcgc cgccggtgaa ggcgttgcgc
     2161 aggcgcgtca ggccgagctg gtccttgatc gggccgcaca ccagccactc gccgagcggc
     2221 cgcagcagcc gctcgcgcaa ggtcggcgcg ccgccttcga gcttgcgccg ctcggccgcc
     2281 agcgccgcgt tcatgaagag gtcgtagacc cacttcttca gcggcgtcga gtcttccatg
     2341 cggacctgga tcgtcgtcag catgttgtcc cagctgcgcg gcgcggcgag gtagaacgtc
     2401 ggcgcgatct cgcgcaggtt gtgcagcacc gtctcctggc gctcggggat gttgatcgtg
     2461 aagcgcagcg ccatgcccgc gcccatggtc atcgcgaagt cgccgaccca ggccatcggc
     2521 aggtaggcga ggatctcctc gtcgaaccgg aacgcgccgg cccggtaggc gttgcgcacg
     2581 ccggcgagca ggttgcggtg cgtcagcacg acgcccttgg gcttgccggt cgtgcccgac
     2641 gagtgcacga agacggccgg cccgtcgggc tgggcgcgcg cgatcagcgc ctcgcgcaag
     2701 cccgcggtct cggcgaggcg ctgtgcgccg cgcgcgacga gaccgtccca tgacacgagg
     2761 ccgggctgcg ggtagtcggc gaggccgcgc gggtcgtcgt agacgatgtg ctcgatcgtc
     2821 gcgtcctgct cgcgcaggtc gagaatcttg tcgacctgct cctggtcctc ggccagcacg
     2881 aagcgcgccc gcgcctcgtg cgtgaagtgg cggatctcgt cgggcgtggc gtcggggaag
     2941 accggcatcg cgtaaccgcg gagcgcgccc gcggcgagca tgcccatgta gagacgcgga
     3001 cggttgtcgc ccaggaccag caccgcgtcc tccgccccga aacccaggtc ctcgaggccg
     3061 gcggcgcagc acagcacggc ctcgagcacc tgcgaccaac tcgtctcctg ccagaccccg
     3121 aggtccttct cgcgcatcgc cgggcggtcc ggaaccgcgc gcgcgttggc ggcgaccacc
     3181 cggacaagcg tggtgtcggt ttcgaagttc caggtccctc ccggtgcgcc aggctcagtg
     3241 cgcgacatgg gccctcccga ggtaggcctc gatgacgcgc ggatcggcga tcacctctgc
     3301 cggtacgccg gttccgatca tctcgccata gctcagcacc gtcatccggt cgcagatgcc
     3361 ggtgatcaca tccatgtggt gctcgatcag cagcaccgtc acgccgcgct cgtcgcgcgc
     3421 gtcgaggacg aagcgcgcca tgtactcctt ctcctcctgg ttcatgccgg ccatcggctc
     3481 atcgagcacc agaaagctcg gttcggccac cagcgcgcgc gccagttcga cgcgtttctt
     3541 cagcccgatc gggatgctgt cgaccaggtc gtcgcgcacg ctctcgagct gcaggaagtc
     3601 gatcacttcc tcgaccgcgg cgcggtgccg gatctcgtcg gggcgggcga gccagcggta
     3661 gcagagggtc cggaacacgc tcggccgcat gtgcacgtgg cgcccgagca ggatgttgtc
     3721 gagcaccgtc atgccattga agagtgcgag gttctggaac gtgcgggcga cgccgagccg
     3781 cgccacgcgg tgcggcgcga ggccggtgat gtcgtggccg ttcaggagga tgctgccgcg
     3841 ctgcggcgga tagaagccgg tgatcgcgtt ggtgagcgtc gtcttgccgc tgccgttcgg
     3901 cccgaccagg ccgaagatct cgccgcgctc gatgcgcagg tcgacaccgg tcaaggccac
     3961 gaggccgcca aagcgccgct cgaccgcccg gcactcgagg accggcggtg gcgccgcgct
     4021 cacgggggtc tgggtcacgc gtcgccttcc tttgcgtccg cgcggttcat cgccgcgcgc
     4081 cgccccgcgg ggcgatgccg tcgaaaatga tgtcggtgat ctgggacgag aagctcttga
     4141 acgaaccgcg cttcgggttg taccactcga cggtccagtt caacgcgccg atcaggaaca
     4201 ggcggatcac cgcgaggttg gtgtccttgc gcagcgcgcc ggcggcgagc gccgcctgca
     4261 gcagatcgtc ccagtactgc gcataggtgc ggcgcacgag ctggtgcctg gccttcgcgg
     4321 ccggcgggat ctgcccgtag atgcggatgt tggccgaggt gaaatcgccg tggtgcagca
     4381 gcccgtagag gtggccgtcg atggcggcgg cgatcctggc gcggtagttc gcgtcggcag
     4441 gcagcgccgc gatgcggctc ttgacggccg tcatcaccgc gtcgatgccg gcgtcgagca
     4501 cgacgccgag gatctcgtcc ttcgacccga agtggtagta gatgctgccg gccttgatgc
     4561 cggccgcttc ggcaatctgg cgcagcgtcg tcgccgcata gccctggtgc cggaagagcc
     4621 gcgccgcgtg cgcgaggatc tggtcacgcg tggcttcggg cgcgggctcg gccgccgcca
     4681 ccggagattt ccggggcttg gcggcgggtt tgcggcgcgc gcccggcagt tcggaacgtg
     4741 cagggcgggg catgggtcgg gcggtcgcga tgcggtcgat ccgcgccggc gcgcgcggat
     4801 cagccgacca tgctgtagcc gcccgacacc gaaagcacct gcccggtcac atggccggcg
     4861 gcgatcgggg aggcgaagaa catcacggcg ttggcgatgt cgctgggacg gccggccttc
     4921 ctcagcggca gggccttggc ggccttctcg acctgctcgg gcgtgaacat gccggtcggg
     4981 tcgtgccaca tgctggtgcc gccgacgtcg ccctcggcct cgggcagcgt cagccccggg
     5041 cagacgacgt tgcagcggat gccgtagcgg ccgttctcct tcgcgatcgt cttcatgaag
     5101 ctgttgatcg ccgccttcat gccgccgtac accgcttcgc gcggctcgcc cgtgcggctt
     5161 gcatcggagc tgatcgagac gatcgcgccg gcgttgcgcc ggatcatcgt ctcgagcgcg
     5221 accttggtgc agttgaggac gccgacgtag ttgatctgga tgatcttctg ccacaactcg
     5281 ggcgtggtct gggtgaagaa catcagcttg tcccagccga cgttgttgac gagcgtgtcg
     5341 accgggccga agcggtcgtc cgcggcctgg aacatcgcct ggacctgggc caagtcggtc
     5401 acgtcggtcg gcacgacctg cacgcccggc gagccgaccc ggcgcgcctc ggcggccgtc
     5461 ttttcagcct gcaccggatc gatgtcgccg atcgtgatcc gggcgccttc gcgagcgaac
     5521 gccagcacga tggcgcggcc gatgttggag ccaccccccg tgacgaccac cgattgattc
     5581 ttcagcccca gatccatcgc atctcccgcg ccacgagccc gcgaacatat ctgccgaacg
     5641 atagttagtc tagatcgggt tcaccctgtg cagtgcggcc tgttccgggg tcagcgagaa
     5701 gtccatcgcc ggccttcaga cccttgccga ggggaagtcg ggggcgcgct tctcgcgcac
     5761 cgcggcgacg ccgtgcgggg cgtcgtcgcc gagaaagcag agcatctcga gcgcgagcga
     5821 gttgtcgaag atcgggcgtg ccacgtgcat ccagttgttc agcgacttct tcgtgtagcg
     5881 gatcgcggtc tggctgccgg cggcgagctt gtcggcgacc ttcatggcgc gctccatcag
     5941 ttcggcctgc ggcacgcaca ggctgacgag g
//
LOCUS       DASVHM010000234         3694 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1099061, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000234 DASVHM010000000
VERSION     DASVHM010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3694
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1099061"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..284
                     /locus_tag="VF308_04535"
     CDS             <1..284
                     /locus_tag="VF308_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX7435950.1"
                     /translation="PMLYHRTGTGKAGEFAPTPGVAIPLSEQRQWLAIPGSAGQPRDG
                     NPAACYAIFDSTARALTFHRVPYDHEAAAAKIRAAGLPQSLAERLTDGG"
     gene            274..1752
                     /locus_tag="VF308_04540"
     CDS             274..1752
                     /locus_tag="VF308_04540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional serine/threonine-protein
                     kinase/universal stress protein"
                     /protein_id="HEX7435951.1"
                     /translation="MAAEAHIQPGMLEVGQIVDGFRLDERIHQGGMANLWRVTRVEPA
                     ASGAAEMPLIMKVPRIKGGDDPATIVGFEVEQMIMPTLVGPHVPKFIAKGDFARLPYI
                     VMERIDGASLRPRFDAAPLPIDEIVQIGWKVATALHDLHRQHVVHLDVKPSNVMFRPL
                     VEGRGGEAVLIDFGLSRHDQLPDLLEEEFELPMGTAPYMSPEQVQFIRNDPRSDLFSL
                     GVMLYHLTTGARPFGAPTGVRGLRQRLYRDPAVPRALRPDCPPWLQEVILRCLEVDPE
                     RRHQTAAQLAFDLQHPDQVALTERAERRTRSGTLTEMKRWFSAIGREGKASGGAAGQT
                     VRSPILLAAVDLTGAEPALLESVSHTVQRLLRTEPGARLACLNVMKINRIGMDELVDA
                     DGTSKHLKLLLQLKHWARQLVQSLDTKHGVQAGRVTFHVLQAPDAASAIIDYARKNRV
                     DHIVMGARSSGGLRRYLGSVSARVVVESDCTVTVVRVATPAG"
     gene            1854..2480
                     /gene="kynB"
                     /locus_tag="VF308_04545"
     CDS             1854..2480
                     /gene="kynB"
                     /locus_tag="VF308_04545"
                     /EC_number="3.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004568573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004061 - arylformamidase activity
                     [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arylformamidase"
                     /protein_id="HEX7435952.1"
                     /translation="MNKLWDISPCVGPETPPFPGDTAYSQQWTARIGPGCPVNLSAIT
                     MSPHLGAHADAPLHYGDGERTIGQVDLAPYLGPCRVIHALGCGPLVRREHLQHAVDML
                     PPRVLVRTCRQAPTVWSADFSAFAPETVAWLAGLGVRLVGIDSQSVDPADSKTLESHH
                     NLLRLDLRVLENLVLDDVPAGDYELIALPLKLAHADASPVRAILRELR"
     gene            2477..>3694
                     /gene="kynU"
                     /locus_tag="VF308_04550"
     CDS             2477..>3694
                     /gene="kynU"
                     /locus_tag="VF308_04550"
                     /EC_number="3.7.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019703648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030429 - kynureninase activity [Evidence
                     IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="kynureninase"
                     /protein_id="HEX7435953.1"
                     /translation="MTTRPDCSSLDANDLLAPLRDEFALPDGVIYLDGNSLGALPKTT
                     PARVQRLVQEEWGSGLIRSWNSAGWIDLAERVGDKIATLVGAGEHELIVGDSTSVNLY
                     KVLSTAIALQKIDAPTRRVIVSERSNFPTDLYIAETLAREHGLTLRLVDADELPAHLD
                     ARLAVLLLTHVNYRTGRMFEMTQVTRDAHAAGALVVWDLAHSAGAVPVDLKGTGRAGE
                     AADFAVGCGYKYLNGGPGAPAFVWAHPRHTERMDREQLRQPLSGWLGHAAPFEFTTDY
                     RPALGIRRFVCGTPALLSMVALDCGVDVFLRAEAHGGLAALRRKSVALTTLFIELVES
                     RCAGHALTLVTPREAARRGSQASFAHATGAYPIMQALIARGVTGDFRAPDLLRFGFTP
                     LYTRFVDVWDAVEH"
BASE COUNT          562 a         1340 c         1257 g          535 t
ORIGIN      
        1 taccgatgct gtatcaccgc accggcaccg gcaaggccgg tgaattcgcg ccgacgccgg
       61 gcgtcgcgat accgctgtcc gagcaacgcc aatggctggc gatccccggg tcggccggcc
      121 agccgcgcga cggcaacccg gccgcctgct atgcgatctt cgacagcacc gcacgcgcgc
      181 tgaccttcca ccgcgtgccc tacgaccacg aggcggcggc cgcgaagatc cgcgccgccg
      241 gcttgccgca aagcctggcc gagcggctca ccgatggcgg ctgaagcgca catccagccg
      301 ggcatgctcg aggtcgggca gatcgtcgac ggcttccgtc tcgacgagcg catccaccag
      361 ggcgggatgg ccaacctgtg gcgcgtgacg cgcgtcgagc ctgcggcgtc gggcgcggcc
      421 gagatgccgc tgatcatgaa ggtgccgcgc atcaagggcg gcgacgaccc ggccaccatc
      481 gtcggcttcg aggtcgagca gatgatcatg cccacactcg tcggaccgca tgtgccgaag
      541 ttcatcgcca agggcgactt cgcgcgcctg ccctatatcg tgatggaacg catcgacggc
      601 gcgtcgctgc ggccgcgctt cgacgcggcg ccgctgccga tcgacgagat cgtgcagatc
      661 ggctggaagg tcgcgacggc gttgcacgac ctgcaccgcc agcatgtcgt gcacctcgac
      721 gtgaagccga gcaacgtgat gttccgcccg ctggtcgaag gccgcggcgg cgaagcggtg
      781 ctgatcgact tcggcctgtc gcgccacgac cagctgcccg acctgctcga agaggagttc
      841 gagctgccga tgggcacggc gccctacatg tcgccggagc aggtccagtt catccgcaac
      901 gatccgcgca gtgacctgtt ctcgctcggc gtgatgctgt accacctgac caccggggcg
      961 cgaccgttcg gcgcgccgac cggggtgcgc ggcctgcgcc agcgcctgta ccgcgacccg
     1021 gccgtgccgc gcgcgcttcg acccgactgc ccgccctggc tgcaggaggt gatcctgcgc
     1081 tgcctcgagg tcgatccgga gcgccggcac cagacggcgg cccaactggc gttcgacctg
     1141 cagcaccccg atcaggtggc gctcaccgag cgcgccgagc gccgcacacg cagcggcacg
     1201 ctgaccgaga tgaagcgctg gttcagcgcg atcggccgcg aaggcaaggc gagcggcggc
     1261 gcggccggac agaccgtgcg cagcccgatc ctgctcgccg cggtcgacct gacaggggcc
     1321 gagccggcgc tgctcgagtc ggtcagccac acggtgcaac gcctactgcg gaccgaaccc
     1381 ggcgcgcggc tcgcgtgcct caacgtgatg aagatcaacc gcatcggcat ggacgaactc
     1441 gtcgatgccg acggcaccag caagcacctc aagctgctgc tgcagctcaa gcactgggcg
     1501 cgccagctgg tgcagtcgct cgacacgaaa cacggcgtgc aggccggtcg cgtgaccttc
     1561 cacgtgctcc aggcccccga cgcggccagc gcgatcatcg actacgcgcg caagaaccgt
     1621 gtcgatcaca tcgtgatggg cgcgcgcagc agcggcgggt tgcggcgcta cctcggcagc
     1681 gtgtcggcgc gtgtcgtggt cgagtccgac tgcaccgtga cggtggtgcg cgtggcgacg
     1741 ccggccggct gagccggtgc ccccgcgggc ggcacgaatc ctcggttcgc gacggacgtg
     1801 tgcggtttta ccgacaccac cgtctcgccg cgggtgctaa cttcgcgacc gacatgaaca
     1861 aactctggga catctcaccc tgcgtcgggc ccgagacacc gccgtttccc ggcgacaccg
     1921 cctactcgca gcagtggacc gcgcgcatcg ggccgggctg cccggtcaac ctgagtgcga
     1981 tcacgatgtc gccgcacctc ggcgcgcatg ccgatgcgcc actgcactac ggcgacggcg
     2041 agcgcacgat cggccaggtc gatctcgcgc cctacctcgg tccgtgccgc gtcatccacg
     2101 cgctcggctg cgggcctctg gtccggcgcg agcatctgca acatgccgtc gacatgctgc
     2161 cgccgcgcgt gctggtgcgc acctgccggc aggcgccgac cgtgtggtcg gccgatttca
     2221 gcgcgttcgc acccgagacg gtcgcctggc tcgccgggct cggggtgcgg ctcgtcggca
     2281 tcgacagcca gtcggtcgac ccggccgaca gcaagacgct cgaaagccac cacaacctgc
     2341 tgcgcctcga cctgcgcgtg ctcgagaacc tcgtcctcga cgacgtgccc gccggtgact
     2401 acgaactgat cgccctgccc ttgaagctgg cgcacgccga cgcatcgccg gtgcgcgcga
     2461 tcctgaggga actgcgatga cgacacgccc cgactgcagc tcgctcgacg cgaacgacct
     2521 cctcgccccg ttgcgcgacg agttcgcgct gcccgacggc gtgatctacc tcgacggcaa
     2581 ctcgctcggc gcgctgccga agacgacgcc ggcgcgcgtg cagcgactgg tgcaggaaga
     2641 atggggcagc ggtctcatcc gcagctggaa cagcgcgggc tggatcgatc tggcggagcg
     2701 cgtcggcgac aagatcgcga ccctggtcgg tgcgggcgaa cacgagctga tcgtcggcga
     2761 ctcgacctcg gtgaacctgt acaaggtgct gagcacggcg attgcactgc agaagatcga
     2821 tgccccgaca cgccgcgtga tcgtttccga gcgcagcaac tttccgaccg acctgtacat
     2881 cgccgaaacg ctggcgcgcg agcacggcct gaccttgcgc ctcgtcgatg ccgacgaact
     2941 gcccgcgcac ctcgacgccc ggctcgcggt gctgctgctg acgcacgtca actaccgcac
     3001 cgggcgcatg ttcgagatga cgcaggtgac gcgcgacgcg catgcggccg gcgcgctggt
     3061 cgtgtgggac ctggcgcatt cggccggcgc cgtgccggtc gatctgaaag gcaccggccg
     3121 cgccggcgag gcggccgact tcgcggtcgg ctgcggctac aagtacctga acggcgggcc
     3181 cggcgcgccg gccttcgtct gggcgcaccc gcgccacacc gaacggatgg accgcgaaca
     3241 attgcgccag ccgctctcgg gctggctcgg tcatgcggcg ccgttcgagt tcacgaccga
     3301 ctaccgcccg gcactcggca tccggcgctt cgtctgcggc acaccggcgc tgctgtcgat
     3361 ggtcgcgctg gactgcggcg tcgacgtctt cctgcgcgcc gaagcccatg gcggcctggc
     3421 cgcgctgcgg cgcaagtccg tcgcgctgac aacgctcttc atcgaattgg tcgagtcgcg
     3481 ctgcgccggc catgcgctca cgctggtgac accgcgcgag gcggcgcgcc gtggcagcca
     3541 ggcgagcttc gcgcatgcca ccggcgccta cccgatcatg caggcgctga tcgcgcgcgg
     3601 cgtgacgggc gacttccgcg cgccggatct gttgcgcttc ggcttcacgc cgctgtacac
     3661 gcgtttcgtc gacgtgtggg acgcggtcga gcat
//
LOCUS       DASVHM010000235         1977 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1387514, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000235 DASVHM010000000
VERSION     DASVHM010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1977
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1387514"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..985)
                     /locus_tag="VF308_04555"
     CDS             complement(<1..985)
                     /locus_tag="VF308_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011300487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate carboxypeptidase"
                     /protein_id="HEX7435954.1"
                     /translation="MAIPPLAAMLRRAALACAVGAGSLLASGTASAAADPALLDAARR
                     AQPAVVESLRDMVLIESGSANVEGLARMADYTERRLKELGAQTERIKATRGPGTLVKG
                     TFTGTGTKRIMLIAHMDTVYPVDTLATQPYRVDFNKLYGPGIADDKGGIAVILHSLRI
                     LGDAGWRNYARLTVLFNPDEEVGSIGSGEAIAALADEHDFVFSCEPTAAKTVAKNEGL
                     LLGASGTATATLEVKGRASHAGAAPDLGRNALIELSHQLLETRDVARSVPGTQLNWTY
                     ARVGEVRNQIPERAVATGDVRVTVGGGAERLQAALQDKVKAAGRLVPDTETI"
     gene            complement(1001..1636)
                     /locus_tag="VF308_04560"
     CDS             complement(1001..1636)
                     /locus_tag="VF308_04560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006162487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HEX7435955.1"
                     /translation="MTTSSPRVTFFHSPNTRSSGVLALLEELGADYDLHVLNMKAGEQ
                     RKPEYLAVNPIGKVPAIRHGDALVTEQGAVFLYLADLFPQAGLAPPIGDPLRGPYLRW
                     LFFYGSSFEPAVVDRAMKREPAPASTSPYGDYETMLGTLTGQLEKGPYLLGERFSAAD
                     VLWGTALAWTTMFKLVPELPVIKAYIDRVAARPAVARARQKDAELAAAQGG"
     gene            complement(1648..>1977)
                     /locus_tag="VF308_04565"
     CDS             complement(1648..>1977)
                     /locus_tag="VF308_04565"
                     /inference="COORDINATES: protein motif:HMM:NF025015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdpI family protein"
                     /protein_id="HEX7435956.1"
                     /translation="NIYVACALIALISVPLILRRVKPNHYYGLRTRGTLADSTLWYDA
                     NAYAGWALLGAAAPSVLLLSFLPAAVRARHWPMLAVFLVPLAVALGASWVRLRRLAPG
                     RALPPPS"
BASE COUNT          298 a          670 c          710 g          299 t
ORIGIN      
        1 cgatcgtttc ggtgtcgggc acgagacgtc cggcggcctt gaccttgtcc tgcagcgccg
       61 cctgcagcct ctcggcgccg ccgccgacgg tcacgcgcac atcgccggtc gcgacggcgc
      121 gctccggaat ctggttgcga acctcgccca cccgcgcgta ggtccaattg agctgggttc
      181 ccgggaccga cctggcgacg tcgcgcgtct cgagcaactg gtgcgaaagt tcgatcagcg
      241 cgttgcggcc cagatccggc gccgcaccgg cgtgcgacgc gcgacccttg acctcgagcg
      301 tcgccgtcgc ggtgccgctc gcaccgagca gcagcccctc gtttttcgcg accgtcttgg
      361 cggcggtcgg ctcgcacgag aacacgaagt cgtgctcatc ggcgagcgcc gcgatcgcct
      421 cgcccgaacc gatcgagccg acctcctcgt cggggttgaa cagcaccgtc aggcgcgcgt
      481 agttgcgcca acccgcgtcg ccgaggatcc tcagcgagtg caggatcacc gcgatgccgc
      541 ccttgtcgtc ggcgatcccc ggaccgtaga gcttgttgaa gtcgacgcga tacggctggg
      601 tcgccagggt gtccacgggg tacaccgtgt ccatgtgggc gatcagcatg atgcgtttcg
      661 tgccggtgcc ggtgaacgtg cccttcacca gggtacccgg accgcgcgtc gccttgatgc
      721 gctcggtctg ggcgccgagc tccttcaggc gcctttcggt gtagtcggcc atcctggcga
      781 gaccttcgac gttggcgctg cccgactcga tcagcaccat gtcgcgcagc gattcgacca
      841 ccgccggctg ggcccgccgc gccgcgtcga gcagcgcggg gtcggctgcg gcggacgcgg
      901 tgccgctggc caggagagag ccggcgccca cggcgcaggc caacgcggcg cggcgcagca
      961 tcgccgcgag agggggaatg gccatcggga ttccttcgat tcagccgcct tgcgccgcgg
     1021 ccagttcggc gtctttctgc ctggcccgcg cgaccgcggg gcgcgcggcg acgcggtcga
     1081 tgtaggcctt gatcaccggc agttcgggaa cgagcttgaa cattgtcgtc cacgcgagcg
     1141 cggtgcccca cagcacgtcg gcggcgctga agcgctcgcc gagcaggtaa gggcccttct
     1201 cgagctggcc ggtcagggtg cccagcatcg tctcgtagtc gccgtagggc gacgtcgacg
     1261 ccggcgccgg ctcgcgcttc atggcgcgat cgacgacggc cggctcgaag ctcgaaccgt
     1321 agaagaagag ccagcgcaaa tacgggccgc gcagcggatc gccgatcgga ggcgcgaggc
     1381 cggcctgggg aaacagatcg gcgagataca ggaacaccgc gccctgctcg gtgacgagcg
     1441 catcgccgtg ccggatcgcg ggcaccttgc ctatcgggtt gacggccagg tattcgggct
     1501 ttcgctgctc gccggccttc atgttcagca cgtgcaggtc gtagtcggcg ccgagctcct
     1561 cgagcagcgc gagcacgccg ctggagcgcg tgttgggcga gtggaagaag gtcacgcgcg
     1621 ggctggatgt cgtcatcgga gtgctctcta cgaaggtgga ggaagggccc ggccgggcgc
     1681 gagccggcgc agacgcaccc agctcgcgcc cagcgcaacc gccagcggca ccaggaacac
     1741 cgcgagcatc ggccaatgcc tggctcgaac cgcggcgggc aggaaggaga gcagcagcac
     1801 gcttggcgcg gcggcgccga gcagggccca accggcatag gcgttggcgt cataccagag
     1861 ggtgctgtcg gccagcgtgc cgcgcgtgcg caatccgtag tagtggttcg gcttgacgcg
     1921 gcgcaggatg agcggaacgc tgatcagcgc gatcagcgcg caggcgacgt agatgtt
//
LOCUS       DASVHM010000236         3806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1170705, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000236 DASVHM010000000
VERSION     DASVHM010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3806
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1170705"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VF308_04570"
     CDS             <1..283
                     /locus_tag="VF308_04570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435957.1"
                     /translation="ARPADSGVPGAGRAGAAPAPASVGRASIGAGMRCGALEQAASKP
                     RIAAGRKVLRRPGAFTMWLILLEAFGALAVLLLIVWWTMFVGRRRGERK"
     gene            complement(332..2326)
                     /locus_tag="VF308_04575"
     CDS             complement(332..2326)
                     /locus_tag="VF308_04575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific recombinase"
                     /protein_id="HEX7435958.1"
                     /translation="MKKGTASAWDVTALLNAADPKATLAERHLWLIRLLEWLRHAPIE
                     SDARATPTPVLRLKHMLGVLERNVEHRGKVAELLGRFLREVDSAALLADFGFAPRIGL
                     AGEFGRRLRARLLPLTPATHDLAELFGLLFPKAEDATWIDALDEATLARLVDCLAPAL
                     ASGQDWRAPFLDAIMFLSSAVRAAGFSTPLRLRMSPELLVDMPFRQLARAAEQLREHA
                     EASGAASAAALLQQAQYLRALLDTCRRCAASVHEHLEAHGVSVDVVFEVDQLHERTHR
                     IDALINCVVSPEPAREIVRLVAELIRTADERRSIRALFSRHYSLLARKVAERSAETGE
                     HYITRDRAEYRAMLRAAAGGGAVLCSTTVLKFLLLAVGVSAFWGGFLAGINYAASFVL
                     VQILHLTVATKQPAMTAHAMAEKLGDVSSDAAVQGFVDEVAHLIRSQSAGIFGNVAAV
                     IPVVLLIQWLWRLVLGAPLLDAEQAAHVFESVSLLGPTAFYAAFTGVLLFASSLIAGW
                     VENWFVLHRLDSAIAWNPRIIARLGQARAQRWAAYWRTHISGLASNISLGMLLGLVPP
                     VALFFGLPLDVRHITLSTGQLAAALGSQGFSVLETGTFWWCVAGIATIGTLNVAVSFF
                     LAFRVALRSRGIHLADRSRIHRAIRARLVGEPLSFLLPPA"
     gene            complement(2331..2705)
                     /gene="apaG"
                     /locus_tag="VF308_04580"
     CDS             complement(2331..2705)
                     /gene="apaG"
                     /locus_tag="VF308_04580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003263374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HEX7435959.1"
                     /translation="MSKPEFSVTVAVRHLPEQSDAQAGQYAFAYTVTIRNSGDVTGQL
                     IARHWIVSDSNGHVEEVRGLAVVGHQPILKPGESFEYTSWTRLATPQGTMRGTFFCMT
                     EDAHPFDAPVGEFGLTLASSLH"
     gene            2778..3458
                     /gene="rpe"
                     /locus_tag="VF308_04585"
     CDS             2778..3458
                     /gene="rpe"
                     /locus_tag="VF308_04585"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEX7435960.1"
                     /translation="MPTYRIAPSILSADFARLGDELRDVIAAGADWIHFDVMDNHYVP
                     NLSFGPMVCEALRKHAVRADGSKVPIDVHLMVEPVDALAQAFAKAGADLISFHPDAST
                     HVDRTVQLIKAEGCRAGLVFNPAAPLDVLEWMIERIDLVLVMSVNPGFGGQSFIPGAL
                     KKIERVRQLIERSGRDIRLEVDGGIKTDNIRAAADAGADTFVAGSAVFGQADYKVVID
                     AMRARLAH"
     gene            3504..>3806
                     /locus_tag="VF308_04590"
     CDS             3504..>3806
                     /locus_tag="VF308_04590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEX7435961.1"
                     /translation="MSAAHDHQPSPAHAHADEPSHGAGDGYAHGHGRAQGHAHDNVDF
                     SRAYAIGIALNTVFVAVEAFYGWRVNSLALLADAGHNLSDVAGLAVAWGGVLAGSLR"
BASE COUNT          609 a         1269 c         1370 g          558 t
ORIGIN      
        1 ggcaaggccg gccgactcag gtgtgcctgg cgccggacgc gccggcgcag cgccggcgcc
       61 cgcttcggtg gggcgtgcct cgatcggcgc gggtatgcgc tgcggtgcgc tcgagcaggc
      121 ggccagcaaa cctagaatcg ccgcaggcag gaaggtcctg cggcggccgg gggcattcac
      181 catgtggctc attttgctgg aagccttcgg cgcgctcgcg gtgctgctgc tgatcgtctg
      241 gtggacgatg ttcgtcggcc gccgccgggg cgaacgcaag tagaccggcc ggcgaatgct
      301 gcggccgtgc gcgccgcgcc gcctttcttc gtcacgccgg cgggagcagg aacgagagcg
      361 gctcgcccac caggcgggcg cggatggcgc ggtggatccg gctgcggtcg gccaggtgga
      421 ttccgcgcga gcgcaacgcg acgcgaaagg cgaggaagaa gctgaccgcg acgttgagcg
      481 tcccgatcgt cgcgatgccg gccacgcacc accagaacgt gcccgtctcc aggaccgaaa
      541 agccctgcga gccgagcgcg gcggcgagct gtccggtcga cagcgtgatg tggcgcacgt
      601 cgagcggcag gccgaagaag agcgcgaccg gtggcaccag cccgagcagc atgccgagcg
      661 aaatgttcga ggccaggccc gagatgtggg tgcgccagta ggcggcccaa cgctgtgcgc
      721 gcgcctgccc gaggcgggcg atgatgcgcg gattccaggc gatcgcgctg tcgagccggt
      781 gcagcacgaa ccagttctcg acccagcccg cgatcagcga gctggcaaag agcagcacgc
      841 cggtgaacgc cgcatagaac gcggtcgggc cgagcaggct caccgactcg aacacgtgcg
      901 cggcttgctc ggcgtcgagc aagggtgcgc cgaggaccag acgccacagc cactggatca
      961 gcagcaccac cgggatcacc gcggcgacgt tgccgaagat gccggccgat tgcgagcgga
     1021 tcaggtgcgc gacctcgtcg acgaagcctt gcacggcggc gtcgctcgac acgtcgccga
     1081 gcttttcggc catcgcgtgc gcggtcatcg ccggctgctt ggtcgcgacg gtcaggtgca
     1141 ggatctgcac gagcacgaac gaggccgcgt agttgatgcc ggccaggaag ccgccccaga
     1201 aggcgctgac gccgaccgcg agcagaagga acttcagcac tgtcgtggag cagagcaccg
     1261 ccccaccgcc ggcggcggcg cgcagcatcg cccggtactc ggcacggtcg cgggtgatgt
     1321 agtgctcacc ggtctcggcg ctgcgctcgg cgaccttgcg cgcgagcagc gaatagtggc
     1381 gcgagaagag cgcgcggatg ctgcgccgct cgtcggcggt gcggatcagc tcggccacca
     1441 ggcgcacgat ctcgcgtgcc ggctccgggc tcacgacgca gttgatgagg gcgtcgatgc
     1501 ggtgcgtgcg ttcgtgcagc tggtcgacct cgaacaccac gtcgaccgag acgccgtgcg
     1561 cttccagatg ctcgtgcacg ctggccgcgc agcgccggca ggtgtcgagc agggcgcgca
     1621 ggtactgggc ctgctgcagc aatgccgcag cgctcgcggc gccgcttgcc tcggcgtgtt
     1681 cgcgcaactg ttcggctgcg cgcgcgagct ggcgaaacgg catgtcgacg agcagttcgg
     1741 ggctcatgcg caaacgcagc ggcgtcgaaa agccggcggc gcgcaccgcg ctcgagagaa
     1801 acatgatcgc gtcgaggaac ggcgcgcgcc agtcctgacc gctcgcgagt gccggcgcga
     1861 ggcaatcgac caggcgcgcg agcgtcgcct cgtcgagcgc gtcgatccag gtcgcgtcct
     1921 cggccttggg aaagagcagg ccaaaaagct cggccagatc gtgggtggcc ggggtcagcg
     1981 gcagcaggcg cgcgcgcagg cgccgcccga actcgccggc caggccgatg cgcggtgcga
     2041 agccgaaatc cgcgagcagc gcggcgctat cgacctcgcg cagaaagcgg ccgaggagtt
     2101 cggcgacctt gccccggtgc tcgacattgc gttcgagcac gccgagcatg tgcttcaggc
     2161 gcagcaccgg cgtgggcgtg gcgcgcgcat cgctctcgat gggcgcatgg cgcaaccatt
     2221 cgagcaggcg gatcagccag aggtgccgct ccgccagcgt ggccttcggg tcggcggcgt
     2281 tgagcagcgc ggtcacgtcc cacgccgagg cggtgccctt cttcaaggac ctaatgcagg
     2341 gacgaggcga gcgtgaggcc gaactcgccg accggcgcat cgaacggatg ggcgtcttcg
     2401 gtcatgcaga agaacgtgcc gcgcatcgtg ccttgcggcg ttgcgagccg ggtccagctc
     2461 gtgtactcga agctttcacc gggcttgagg atgggttggt ggccgacgac cgcgagcccg
     2521 cgcacctctt cgacatggcc gttcgaatcg ctgacgatcc agtggcgcgc gatcaactgg
     2581 cccgtcacgt cgccgctgtt gcggatcgtc accgtgtagg cgaacgcata ctggccggcc
     2641 tgcgcgtccg actgctcggg caggtggcgc acggcgaccg tgacgctgaa ttcgggtttc
     2701 gacatgcgga gggattctac ggagccgagg cgtcgataat cgcgtcaacg aaattccgct
     2761 gcgcccttct gcccaccatg ccgacctacc gaattgctcc gagcattctc tctgcggatt
     2821 tcgcgcgcct cggcgacgaa cttcgcgacg tcatcgcggc cggcgccgac tggatccatt
     2881 tcgacgtgat ggacaaccac tacgtgccga acctctcctt cgggccgatg gtgtgcgagg
     2941 ccttgcgcaa acacgcggtg cgcgccgacg gctcgaaggt gccgatcgac gtgcacctga
     3001 tggtcgagcc ggtcgacgcg cttgcgcagg ccttcgcgaa ggccggcgcc gacctgatca
     3061 gctttcaccc ggacgcgagc acgcacgtcg accgcacggt gcagctgatc aaggccgaag
     3121 gctgccgggc cgggctcgtg ttcaacccgg ccgcgccgct cgacgtgctc gaatggatga
     3181 tcgagcggat cgacctcgtg ctcgtgatga gcgtcaaccc ggggttcggc ggccagagtt
     3241 tcattccggg cgcgctgaag aagatcgagc gcgtgcgcca gctgatcgag cgcagcggcc
     3301 gcgacatccg cctcgaggtc gacggcggca tcaagaccga caacatccgc gccgccgccg
     3361 atgccggtgc cgacaccttc gtcgccggca gcgcggtgtt cggccaggcc gactacaagg
     3421 tcgtgatcga cgcgatgcgc gcgcggctgg cgcactgaga cgagggccgg acgtttcgcg
     3481 cctgcatccc gttcgatgac tcgatgagtg ccgctcacga ccaccagcct tcgccggccc
     3541 atgcgcatgc ggatgagcct tcgcacggtg ctggcgatgg gtacgcgcat gggcacggtc
     3601 gcgcgcaggg acacgcgcac gacaacgtcg atttcagccg cgcctacgcg atcggcatcg
     3661 ccttgaacac ggtcttcgtc gcggtcgagg cgttctacgg ctggcgcgtc aattcgctcg
     3721 ccttgcttgc cgatgcgggc cataacctga gcgatgtcgc cggcctcgcg gtcgcgtggg
     3781 gcggcgtgct cgccggcagc ctgcgt
//
LOCUS       DASVHM010000237         1589 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_810030, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000237 DASVHM010000000
VERSION     DASVHM010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_810030"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1049)
                     /locus_tag="VF308_04595"
     CDS             complement(<1..1049)
                     /locus_tag="VF308_04595"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006765450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HEX7435962.1"
                     /translation="MKVTVIGTGYVGLVTGACLADLGNDVLCLDIDARKIALLREGTI
                     PIHEPGLAEIVHRNSASGRLRFGTDAREAALHGRVQFIAVGTPPDEDGSADLQYVLAA
                     ARQLGRHMDGWRVVVDKSTVPVGTAVKVRAAIAEELAARGADLPFSVVSNPEFLKEGA
                     AIDDFMRPDRIIVGSDDARATEVMRQLYAPFERNHAKLMVTDIASAELTKYAANAMLA
                     TRISFMNEMALLAERLGADIDAVRRGIGSEPRIGRHFLYAGCGYGGSCFPKDLKALAR
                     AAAEAGTPMRLLEAVEAANEHQKHVLIGKVEARFGADLAGRVIAIWGLAFKPGTDDMR
                     EAPSQIVVRELARRGA"
     gene            complement(1056..>1589)
                     /locus_tag="VF308_04600"
     CDS             complement(1056..>1589)
                     /locus_tag="VF308_04600"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEX7435963.1"
                     /translation="TFVTRKITRALARIALGLQDCLYLGNLDALRDWGHAKDYVEVQW
                     LMLQQDQPEDFVIATGVQYSVRRFVEMAAAELGITLKFSDTGESEIGTIAKVQGSKAS
                     CKPGDVVVKVDPRYFRPTEVATLLGDASKAKAKLGWAPKIALPELVREMVEADYSSAR
                     RDSLVKEAGFQAYDYNE"
BASE COUNT          222 a          536 c          555 g          276 t
ORIGIN      
        1 gcgccgcgcc gcgccagttc gcgcacgacg atctggctcg gcgcttcgcg catgtcgtcg
       61 gtgccgggct tgaacgccaa gccccagatc gcgatcacac ggccggcaag atcggcgccg
      121 aagcgcgctt cgaccttgcc gatcagcaca tgtttctggt gttcgttggc cgcttcgacg
      181 gcctcgagaa ggcgcatcgg cgtgccggct tccgcggccg cgcgggcgag cgccttcagg
      241 tccttcggga agcacgagcc gccgtagccg cagccggcgt agaggaagtg ccggccgatg
      301 cgcggttcgc tgccgatgcc gcggcgcacc gcgtcgatgt cggcgccgag ccgctcggcg
      361 agcagcgcca tctcgttcat gaagctgatc cgcgtggcga gcatggcgtt cgcggcgtac
      421 ttcgtgagct cggccgaggc gatgtcggtg accatcagct tggcatggtt gcgctcgaaa
      481 ggcgcgtaga gctggcgcat gacctcggtg gcgcgcgcgt cgtcgctgcc gacgatgatc
      541 cggtccgggc gcatgaagtc gtcgatcgcc gcgccttcct tgaggaattc ggggttggag
      601 acgacgctga agggcaggtc ggcgccgcgc gcggcgagct cctcggcgat cgcggcgcga
      661 accttcacgg cggtaccgac cgggaccgtg ctcttgtcga cgacgacgcg ccagccgtcc
      721 atgtggcggc cgagctggcg cgccgccgcg agcacgtact gcaggtcggc cgagccgtct
      781 tcgtcgggcg gcgtgccgac ggcgatgaac tgcacccgcc cgtgcagggc cgcttcgcgc
      841 gcatcggtgc cgaagcgcag gcggccggac gcgctgtttc gatgcacgat ctcggccagg
      901 cccggctcgt ggatcgggat cgtgccctcg cgaagcaagg cgatcttgcg cgcgtcgatg
      961 tcgaggcaga gcacgtcgtt gccgaggtcg gcgaggcagg cgccggtgac gagcccgacg
     1021 taaccggtgc cgatgacggt gaccttcatc gccggctatt cgttgtagtc ataggcctgg
     1081 aacccggctt ccttgaccag gctgtcgcgc cgcgccgagg aatagtcggc ctcgaccatt
     1141 tccctgacca gttcgggcag cgcgatcttc ggcgcccagc cgagcttggc cttggccttg
     1201 ctcgcgtcgc cgagcagcgt tgccacttcg gtcgggcgga agtagcgcgg atcgaccttg
     1261 accaccacgt cacccggctt gcagctcgcc ttggagcctt ggaccttggc gatcgtgccg
     1321 atctcgctct cccccgtgtc gctgaacttc agcgtgatgc cgagctcggc cgccgccatc
     1381 tcgacgaacc ggcgcacgct gtattgcacg ccggtggcga tcacgaagtc ttcgggctga
     1441 tcctgctgca gcatcagcca ttgcacttcg acgtagtctt tcgcgtggcc ccagtcgcgc
     1501 aacgcgtcga ggttgccgag gtacaggcaa tcctgcaggc cgagcgcgat gcgcgccagt
     1561 gcccgcgtga tcttgcgcgt cacgaaggt
//
LOCUS       DASVHM010000238         3286 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_594869, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000238 DASVHM010000000
VERSION     DASVHM010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3286
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_594869"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..425
                     /locus_tag="VF308_04605"
     CDS             <1..425
                     /locus_tag="VF308_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019429702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7435964.1"
                     /translation="LGMLVAAAVWALGTQQLRHTRIAVPTLAIVFWMTLITTLAMTLL
                     TFTFERPRWAMPAPTTWAAIAYNAVLIFGFAQAIWLILARDLPPVASTMSVMLIPVLG
                     TLSGALWLKEALHWQDGAAIVLMLVAIAAVMWPSAQRA"
     gene            complement(413..871)
                     /gene="ybeY"
                     /locus_tag="VF308_04610"
     CDS             complement(413..871)
                     /gene="ybeY"
                     /locus_tag="VF308_04610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEX7435965.1"
                     /translation="MPAARRPRPRLTLSLQFADPADRALLPRHRVARWLGAALERPAQ
                     ITVRIVGADEGQALNREFRGKDAATNVLTFDYQREPAVVADLVLCAPVLRREAAEHGL
                     ALDAHYAHLIVHGALHAQGYDHEADADAAAMERRESEVLRALGFPDPYAR"
     gene            complement(879..1856)
                     /locus_tag="VF308_04615"
     CDS             complement(879..1856)
                     /locus_tag="VF308_04615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010104591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEX7435966.1"
                     /translation="MILRHAFIPPDNTRLAHLCGGLDENLHAIEAALDVRISRRNESF
                     RIEGTPQHAQQAVALLQSLYGRARRPIAPEKLQLALVEAAAQPVGATSEGGRAATEHE
                     PEEIVLRTRRADLAGRTPNQLAYLRNILSHDMTFGIGPAGTGKTYLAVACAVDALERS
                     AVQRVILTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLMGLEKVGKAFEKGTL
                     EIAPLAFMRGRTLNHAFVILDEAQNTTPEQMKMFLTRIGFGAKAVVTGDVSQIDLPRG
                     ANSGLIDAERVLRRVRGIATTHFTSADVVRHPLVAHIVEAYDAARKDDL"
     gene            1971..2543
                     /gene="ruvA"
                     /locus_tag="VF308_04620"
     CDS             1971..2543
                     /gene="ruvA"
                     /locus_tag="VF308_04620"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEX7435967.1"
                     /translation="MIGRLTGTLAEKSPPHLLIDVNGVGYEVDVPMSSFYNLPAIGER
                     VTLLTHFVVREDAHVLFGFLTHEERTTFRLLVKISGVGPRTALAILSGLSVTELAQAV
                     SLQESGRLVKVPGIGKKTAERLLLELKGKLGDALSAPASISAGAQTDILQALLALGYN
                     DREAAAALKALPADVPVSEGIKLALRALAK"
     gene            complement(2622..3086)
                     /locus_tag="VF308_04625"
     CDS             complement(2622..3086)
                     /locus_tag="VF308_04625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014007983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEX7435968.1"
                     /translation="MKILAIVAALWLCGPAAFGGDYQAGSLAILHPYARPTAPAQPTG
                     GGYLSVVNKGSDDRLVSASAPVAQSVQLHSMRMEGDVMRMREVAAIELPAGQTVELKP
                     GGWHLMLIGLKAPLAVGQSFPVRLVFEKAGTVTVEVKVEAPGAADLHHDKAH"
     gene            3138..>3286
                     /locus_tag="VF308_04630"
     CDS             3138..>3286
                     /locus_tag="VF308_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEX7435969.1"
                     /translation="MTIQTDEFEPARLVAAAPASPAEEAIERALRPKGLAEYVGQTKA
                     REQLE"
BASE COUNT          481 a         1136 c         1154 g          515 t
ORIGIN      
        1 cgctaggcat gctggtcgcg gcagcggtct gggcgctcgg cacgcagcag ttgcgtcaca
       61 cgcgcatcgc ggtgccgacg ctcgccatcg tgttctggat gaccttgatc acgacgctcg
      121 cgatgacgct gctgacgttc acgttcgaac gcccgcgctg ggccatgccg gcgcccacga
      181 cctgggctgc gatcgcctac aacgcggtgc tgatcttcgg cttcgcgcag gccatctggc
      241 tgatcctcgc gcgcgacctg ccaccggtgg cctcgaccat gtcggtgatg ctgattccgg
      301 tcctcggcac gctctcgggc gcgctgtggc tgaaggaggc gctgcactgg caggatggcg
      361 ccgcgatcgt gctgatgctg gtcgcgatcg ccgcggtgat gtggccaagc gctcagcgcg
      421 cgtaggggtc gggaaagccg agcgcgcgca gcacctcgct ctcgcgccgc tccatcgccg
      481 cggcgtcggc atcggcctcg tggtcgtagc cctgcgcgtg cagcgcgccg tgcacgatca
      541 ggtgcgcgta gtgcgcgtcg agggcgaggc cgtgctcggc ggcttcgcgc cgcagcaccg
      601 gggcgcacag cacgagatcg gcgacgaccg cgggctcgcg ctggtagtcg aaggtcagca
      661 cgttggtcgc ggcgtccttg ccgcggaact cgcggttgag cgcctgccct tcgtccgcgc
      721 cgacgatccg caccgtgatc tgcgccggcc gctcgagcgc cgcgcccagc cagcgggcga
      781 ctcggtggcg cggcagaagg gcgcggtcgg ccgggtcggc aaactgcagc gacagggtca
      841 gccgcgggcg cggccgcctc gccgcgggca cggccgggtc agagatcgtc cttgcgcgcc
      901 gcgtcatagg cctccacgat gtgcgcgacg agcggatggc gaaccacgtc ggccgaggtg
      961 aaatgcgtcg tcgcgatgcc gcgcacgcgg cgcagcacgc gctcggcgtc gatcagcccc
     1021 gagttggcgc cgcgcggcag gtcgatctgg ctcacgtcgc cggtaacgac ggccttggcg
     1081 ccgaagccga tccgggtcag gaacatcttc atctgctccg gcgtcgtgtt ctgggcctcg
     1141 tcgaggatca cgaacgcatg gttcagcgtg cgaccgcgca tgaaggcgag cggcgcgatc
     1201 tcgagcgtgc ccttctcgaa cgccttgccc accttctcga ggcccatcag gtcgtagaga
     1261 gcgtcgtaga gcgggcgcag gtagggatcg accttttgcg ccaggtcgcc cggcaggaag
     1321 ccgaggcgct cgccggcttc gaccgccggt cgtgtcagga tcacgcgctg caccgcgctg
     1381 cgctcgagcg catcgaccgc gcaggccacg gccaggtagg tcttgccggt gcccgccgga
     1441 ccgatgccga acgtcatgtc gtggctgagg atgttgcgca ggtaggccag ttgattcggc
     1501 gtgcgcccgg ccaagtcggc gcgacgcgtg cgcagcacga tctcctccgg ctcatgttcg
     1561 gtcgcggcgc ggccgccttc ggacgtcgcg ccgacgggtt gggctgcggc ctcgaccagg
     1621 gcgagctgca gcttttccgg cgcgatcggg cgccgggccc ggccatagag cgactgcagc
     1681 aacgcgacgg cctgttgcgc gtgttgcggc gttccttcga tgcggaacga ttcgttgcgg
     1741 cgcgagatcc tgacgtcgag cgcggcctcg atcgcgtgca ggttttcgtc gaggccgccg
     1801 cacaggtggg caagacgggt gttgtcgggc ggaatgaagg cgtggcgcag gatcacgagc
     1861 aagcgtcgaa gcggtttgcg ggattgtcgc tccgccggcg ccacaggccg cgcgcaaggg
     1921 cgctggtacg atgatttccg gcgcgccgtg cgccgcttgg cggccctacc atgatcggac
     1981 gcttgaccgg cacgctcgcc gagaagtcgc ccccgcacct gctgatcgac gtgaacggcg
     2041 tcggctatga agtggacgtg ccgatgagca gcttctacaa cctgccggcg atcggcgaac
     2101 gggtcacgct gctgacccac ttcgtggtgc gcgaagacgc ccacgtgctg ttcggctttc
     2161 ttacccacga agagcgcacg accttccgcc tgctggtgaa gatttcgggc gtcggaccgc
     2221 gcacggccct cgccatcctc tcgggcctga gcgtcaccga gctggcccag gcggtgagcc
     2281 tgcaggagag cggccgcctc gtgaaggtgc cggggatcgg caagaaaacc gccgaacgcc
     2341 tgctgctcga attgaaaggc aagctcggcg acgcgctcag cgcaccggcg agcatctctg
     2401 ccggcgccca gaccgacatc ttgcaagcgc tcctcgcgct cggctacaac gaccgcgagg
     2461 ccgccgccgc gctgaaggcg ctcccggcgg acgtgccggt cagcgaaggc atcaagctgg
     2521 cattgcgagc tctcgcaaag tagacctcgc ttcggcgcat cgctcggtgg ttctcgcaaa
     2581 gccgcacgcc cgcggctatg cgcgctcggt cgcgttcgga attagtgcgc cttgtcgtgg
     2641 tgcaggtccg cggccccggg cgcctcgacc ttcacctcga ccgtgacggt gccggccttc
     2701 tcgaacacca gcctcaccgg aaaactctgc ccgaccgcga gcggcgcttt caggccgatg
     2761 agcatcagat gccagccgcc cggcttgagc tccacggtct ggccggccgg cagctcgatc
     2821 gccgcgactt cgcgcatgcg catcacgtcg ccttccatcc gcatgctgtg gagctgcacg
     2881 ctctgcgcga ccggcgcact ggccgacacg agccggtcgt cgctgccctt gttgaccaca
     2941 ctcaagtagc caccgcccgt cggctgcgcc ggcgccgtgg gccgcgcgta cggatgcagg
     3001 atcgcgaggc tcccggcctg atagtctcca ccgaacgcgg cagggccgca cagccacagc
     3061 gcagcgacga tggcgaggat tttcatcggg cgattgtgcc aaagcggggc gcatggaagg
     3121 cgtgcccata atcgcgcatg acgatccaga ccgacgagtt cgagcccgca cgcctggtcg
     3181 ccgcggcgcc ggcctcgccc gccgaagaag cgatcgaacg cgcgctgcgc ccgaagggcc
     3241 tcgccgaata cgtgggccag accaaggcgc gcgagcaact cgagat
//
LOCUS       DASVHM010000239         2451 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_522177, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000239 DASVHM010000000
VERSION     DASVHM010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_522177"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..262
                     /locus_tag="VF308_04635"
     CDS             <1..262
                     /locus_tag="VF308_04635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012247533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7435970.1"
                     /translation="RMLVPRAESAAGATNLLVAGRCASMTHDGQSAARVSGACFVMGQ
                     AAGTLAALAGSSRGLHEVPVEALQAALRADGAWLGDGAPPPP"
     gene            357..1097
                     /gene="msrA"
                     /locus_tag="VF308_04640"
     CDS             357..1097
                     /gene="msrA"
                     /locus_tag="VF308_04640"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017451716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEX7435971.1"
                     /translation="MTRTSSAPISVPRRTAFCAGLAAALAISAFAPRTTIAAESAVKI
                     APPAVDTTSSASGTQTAVFAGGCFWGVQGVFQRVSGVVQAVSGYAGGAKETAQYEMVG
                     SGLTGHAESVKITYDPKKVSYGTLLQIYFSVAHDPTQLNRQDPDSGPQYRSAVFYADP
                     AQKETTEKYIAQLDAAKSYPRKIVTQVVPLTAFYAAEAYHQDYLTLHPESGYIARFDL
                     PKIANLKAMFPQQFRAEPALVMARAKPQ"
     gene            complement(1242..>2451)
                     /locus_tag="VF308_04645"
     CDS             complement(1242..>2451)
                     /locus_tag="VF308_04645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015012422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7435972.1"
                     /translation="LDILSKAAHAPKMNLFVNAALLGFIPKSVKKGMMALAPVRRIKA
                     AVLKDLGLPEDMLTFVNFPTRYDCRETLAALKGSGIACPNLHDYAWRLWDYWERHLDP
                     ALQIDRSLRGTVAGKVVLVTGGSSGIGLAAATKFAEAGAITVICARDEAKLAEARREI
                     LEKAGKGANVETFSADIADEASCKALVDWLNDKHGGVDFLVNNAGRSIRRAIEASYER
                     FHDFERTMQLNYFGCLRVTMGFLPGMVAKKKGHIVNISSIGVLTNAPRFSAYVASKAA
                     LDAWTRCASSEYADMGITFTTINMPLVRTPMIGPTRIYDNVPVLAPEDAANMIAEACV
                     DKPVRIATRLGTTGELMHALVPRVAQIVMNSAFRMFPDSAAAKGDTEKKYQPSAEAMA
                     MAQMMRGIHF"
BASE COUNT          380 a          873 c          808 g          390 t
ORIGIN      
        1 gcgaatgctc gttccgcgcg ccgagagcgc tgccggtgcg acgaacctgc tcgtcgccgg
       61 ccgttgcgcg tcgatgacgc acgacggcca gtcggcggcg cgtgtctcgg gcgcctgctt
      121 cgtgatgggc caggccgccg gaacgctcgc cgccctcgcc ggctcctcac gcggcctgca
      181 cgaggtgccg gtcgaagcgc tccaggcggc cttgcgcgcc gacggtgcct ggctcggcga
      241 tggcgcgccg cccccgccgt gagcgggctc ttgcagcccg cgccgcggcg tccgatgtcg
      301 atctctgtaa tcatcgacag gctggcgcag accaagcgac atttgacgga gcgaacatga
      361 ctcgaacctc ttctgccccg atctcggtgc cgcgccgaac cgccttctgc gccggcctcg
      421 ccgccgcgct cgcaatcagc gccttcgcgc cgcgcacgac gatcgccgcc gagtcggccg
      481 tcaagatcgc accgcccgcc gtcgacacca cgagcagcgc gagcggcacg cagaccgcgg
      541 tgttcgcggg tggctgtttc tggggcgttc agggcgtgtt ccagcgcgtc agcggcgtcg
      601 tccaggcggt gtccggctac gccggcggcg ccaaggaaac ggcgcagtac gagatggtcg
      661 gcagcggact caccggccac gccgagtcgg tgaagatcac ctacgacccg aagaaggtca
      721 gctacggcac gctgctgcag atctacttct cggtcgcgca cgacccgacc cagctcaatc
      781 gccaggatcc cgacagcggc ccgcagtacc gctcggcggt gttctatgcc gacccggcgc
      841 agaaggaaac gaccgagaaa tacatcgccc agctcgacgc cgccaagtcg tacccgagga
      901 agatcgtcac ccaggtcgtc ccgctcaccg cgttctatgc cgccgaggcg tatcaccagg
      961 actacctgac gctgcacccc gagtcgggct acatcgcccg cttcgacctg cccaagatcg
     1021 ccaacctgaa ggcgatgttc ccgcagcagt tccgtgccga gcccgccctc gtcatggccc
     1081 gcgccaagcc gcaataggaa acagcgttcg gccctgccga acccgaaatc ggccaccggc
     1141 cgacgagccc cgggcgagtt gacggacgcc gcgccgtcgg cgcggtgatc cgtcgaacga
     1201 gccccacccg gccgacgcgc gtccagcgct gtcgagctgg gtcagaaatg aatgccgcgc
     1261 atcatttgcg ccatcgccat cgcctccgcc gacggctggt acttcttctc cgtgtcgccc
     1321 ttcgcggccg cgctgtccgg gaacatccga aaggccgagt tcatgacgat ctgcgccacc
     1381 cgcggcacca gcgcgtgcat cagctcgccg gtggtgccca gccgcgtcgc gatccgcacc
     1441 ggcttgtcca cgcacgcctc ggcgatcatg ttcgcggcat cctcgggcgc cagcaccggc
     1501 acgttgtcgt agatcctggt cgggccgatc atcggcgtgc gcacgagcgg catgttgatc
     1561 gtcgtgaagg tgatgcccat gtcggcatat tcgctcgacg cgcagcgcgt ccaggcgtcg
     1621 agtgccgcct tcgacgcgac gtacgccgag aagcgcggcg cgttggtcag cacgccgatc
     1681 gagctgatgt tgacgatgtg gcccttcttc ttggcgacca tgccgggcaa aaagcccatc
     1741 gtcacgcgca ggcagccgaa gtagttgagc tgcatcgtcc gctcgaagtc gtggaagcgc
     1801 tcgtagctcg cctcgatggc gcggcggatc gagcggccgg cgttgttgac gaggaagtcg
     1861 acgccgccgt gcttgtcgtt gagccagtcg acgagcgcct tgcagctcgc ctcgtcggcg
     1921 atgtcggcag agaaggtctc gacgttcgcg cccttgcccg ccttctcgag gatctcgcgc
     1981 ctggcctcgg ccagcttggc ctcgtcgcgg gcgcagatga cggtgatcgc gccggcctcg
     2041 gcgaacttgg tcgccgccgc caggccgatg cccgacgagc cgccggtgac gagaacgact
     2101 ttgccggcga ccgtgccgcg caacgaacgg tcgatctgga gcgccggatc gagatggcgc
     2161 tcccagtagt cccagaggcg ccaggcgtag tcgtggaggt tcgggcacgc gatgcccgag
     2221 cccttcagcg cggcgagcgt ctcgcggcag tcgtaacggg tcgggaagtt gacgaaggtc
     2281 agcatgtcct cgggcaggcc gaggtccttc agcaccgccg ccttgatgcg gcgcaccggc
     2341 gcgagcgcca tcattccctt cttcacgctc ttcgggatga agccgagcag cgccgcgttg
     2401 acgaacaggt tcatcttcgg cgcatgcgcc gccttgctga ggatgtcgag g
//
LOCUS       DASVHM010000240         2097 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1244186, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000240 DASVHM010000000
VERSION     DASVHM010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1244186"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..566
                     /locus_tag="VF308_04650"
     CDS             <1..566
                     /locus_tag="VF308_04650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AgmX/PglI C-terminal domain-containing protein"
                     /protein_id="HEX7435973.1"
                     /translation="GVGAGNEAGVPTRALITSNATGGSGGINTASYSRNTGGGGLAGR
                     ATTLVEGVIGGGGGGARGRGDGNGSSIGGAGGGGNGAGGSVQKGGGKASRSLEDVRLV
                     FDRNKGAIYAIYNRALREEPGLQGKVVLKLTIAPSGSVVDCRIESSDLHAPELEAKLL
                     ARIRQFDFGAKDVNEMLVSYPVDFLPS"
     gene            complement(575..1669)
                     /locus_tag="VF308_04655"
     CDS             complement(575..1669)
                     /locus_tag="VF308_04655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase NADP-binding
                     domain-containing protein"
                     /protein_id="HEX7435974.1"
                     /translation="MRVALLGAGHIGQTIAHLLHGCDDFELVVLDRSAPALAELAREG
                     IETQLIDTADTTALAAALRGRQAVVNALPYHLALATARLALECGCHYFDLTEDVAATR
                     EIKHIARGAQTAFMPQCGLAPGFIGIVAHHLTRSFDTLHDVKMRVVALPAFPTNALKY
                     NLTWSVDGLINEYCHPCECIHDGQAMQALPLEGLEHFSLDGTEYEAFNTSGGLGTLCE
                     TLGRRVKNLDYKTVRYPGHRDLMTMLLHDLQLKSDPETLKSIMRRSMPATMQDVVLVF
                     VTVSGLRTGRLLQEVFARKIFAERDGAAPLPAIQITTAAGICAALDLFREGKLPQAGF
                     IRQEQVELPALLANRFGRAYQQSRQVESIG"
     gene            complement(1826..>2097)
                     /locus_tag="VF308_04660"
     CDS             complement(1826..>2097)
                     /locus_tag="VF308_04660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018915411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX7435975.1"
                     /translation="NLALARRVHEIAAPLGCTPGQLALAWLLAQGEDIVPIPGTKRRR
                     YLEENMGAVELKLEPAVIAELAWVFPPGAAAGERYPANMMAALNR"
BASE COUNT          326 a          671 c          777 g          323 t
ORIGIN      
        1 tcggcgttgg cgcgggcaac gaagccggcg tgccgacccg cgcgctgatc acgtcgaacg
       61 cgaccggcgg cagcggcggg atcaacaccg cgagctacag ccgcaatacc ggcggcggcg
      121 gtctcgccgg ccgcgccacg acgctggtcg aaggcgtcat cggcggcggc ggcggcggtg
      181 cgcgcggccg cggcgacggc aacggcagca gtatcggtgg cgcgggcggt ggcggcaacg
      241 gtgccggcgg ctcggtgcag aagggcggtg gcaaggcgtc acgctcgctc gaggacgtcc
      301 ggctcgtctt cgaccgcaac aagggtgcga tctacgcgat ctacaaccgc gcgctgcgcg
      361 aggagccggg gttgcagggc aaggtcgtcc tgaagctcac gatcgcccct tccggcagcg
      421 tcgtggactg ccggatcgag tcgagcgatc tgcacgcgcc cgagctcgaa gccaagctgc
      481 tcgcacggat ccgccagttc gacttcggcg ctaaggatgt caacgagatg ctcgtgagct
      541 atccggtcga cttcctgccg tcgtagatgc ggcgtcagcc gatcgactcg acctggcgcg
      601 actgctggta ggcccggccg aatcgattcg cgagcaaggc cggcagttcg acctgctcct
      661 gtcggatgaa gccggcctga ggcagcttgc cttcgcggaa caggtcgagc gcggcgcaga
      721 tgcccgccgc ggtggtgatc tggatcgccg gcagcggtgc ggcgccgtcg cgctcggcga
      781 agatcttgcg cgcgaagact tcctgcagca gacggccggt gcgcagtccc gagacggtga
      841 cgaagacgag gaccacgtcc tgcatcgtcg cgggcatgga ccggcgcatg atgctcttga
      901 gcgtttccgg gtcgctcttg agttgcaggt cgtgcaggag catggtcatc aggtcgcgat
      961 ggcccggata gcgcacggtc ttgtagtcga ggttcttcac ccggcggccc agcgtctcgc
     1021 acagcgtgcc cagcccgccc gaggtgttga aggcctcgta ctcggtgccg tcgagcgaga
     1081 agtgttcgag cccctcgagc ggcagcgcct gcatcgcctg gccgtcgtgg atgcattcgc
     1141 agggatggca gtactcgttg atgaggccgt ccacgctcca ggtgaggttg tacttcagcg
     1201 cgttggtcgg aaaggcgggc agcgcgacga cgcgcatctt cacgtcgtgc agcgtgtcga
     1261 acgagcgcgt caggtgatgc gcgacgatgc cgatgaagcc gggcgcgagg ccgcactgcg
     1321 gcatgaacgc cgtctgtgcg cctcgggcga tgtgcttgat ctcccgggtc gcggccacat
     1381 cctcggtcag atcgaagtag tggcagccgc attcgagcgc aaggcgtgcg gtggcgagcg
     1441 cgaggtggta gggcaaggcg ttgacgacgg cctggcggcc gcgcagtgcg gcggctagcg
     1501 ctgttgtgtc ggcagtgtcg atgagctgcg tctcgatccc ttcacgggcg agctcggcca
     1561 gcgccggcgc gctgcgatcg agcacgacga gctcgaagtc gtcgcacccg tgcagcaggt
     1621 gggcgatggt ctggccgatg tgcccggcac cgagcagcgc gactcgcatc gatggctccg
     1681 aggaggtgta cgcgaggcag tctagacggg gtcgggcccg aaggatcgga tcgatcgcga
     1741 tccgatcgcg ccgcccttgg ccaacgcgcg cgaaagtacc gcgaatcggg cgcaggcagg
     1801 gtgcggcgcg gacgagagcc gtcacctacc ggttgagcgc ggccatcatg ttggccggat
     1861 agcgttcgcc ggccgcggcg ccgggcggaa acacccaggc gagctcggcg atcaccgccg
     1921 gctccagctt cagctcgacc gcacccatgt tttcctcgag atagcgacgc cgcttggtgc
     1981 cgggtatcgg cacgatgtcc tcaccctggg cgagcaacca ggcgagcgcg agctgccccg
     2041 gcgtgcagcc gagcggcgcg gcaatctcgt gcacgcgccg cgcgagcgcg aggttcc
//
LOCUS       DASVHM010000241         1537 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_304947, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000241 DASVHM010000000
VERSION     DASVHM010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304947"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..297
                     /locus_tag="VF308_04665"
     CDS             <1..297
                     /locus_tag="VF308_04665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435976.1"
                     /translation="EFGVAKHTYVATRSGWFSDRTACYLAAGRPALVQDTGWTAHLPS
                     GEGLLAFSSPEEALAGIDRINGDYDRHARCAADIARDHFGADRVLPALLEVAGR"
     gene            351..1388
                     /locus_tag="VF308_04670"
     CDS             351..1388
                     /locus_tag="VF308_04670"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEX7435977.1"
                     /translation="MRIAHIAPVATEVPPLKSGSVELMTSLLTEGLVAKGQDVTLFAT
                     ADSKTKAKLHAIYKQGYWHDENMWPWELYEMLNLAAAVELARDFDIIHYEAAYYPMSL
                     AFARLSPTPMVQTLHHSPSEAEIGLWSRYPEAPFVAISNEQARLLHGLNVIGTVLHGI
                     DTDSFTFQAKPDDYLLFLGRFTDGKGVLQAIEVAKRVGMRLILAAAEDEYYRDKVAPH
                     VDGTRVIYYGEADHPAKVKLYGGARALLYPIQAREPFGLVLAEAMACGTPVAALDRGA
                     VREVVDEGVTGFVFQDLEEMVNGLPRVFDLDRRRVRERAVMRFGVERMVDEYIAVYRR
                     LVAAHGASHGR"
BASE COUNT          251 a          531 c          504 g          251 t
ORIGIN      
        1 gagttcggcg tcgccaagca tacctacgtc gcgacgcgat cgggctggtt cagcgatcgc
       61 acggcgtgtt atctggccgc cggccggccg gcgctcgtgc aggacacggg ctggacggcg
      121 catctgccgt cgggcgaggg gctgctcgcg ttctcgtcgc ccgaggaggc gctggccggc
      181 atcgaccgca tcaacggcga ctacgaccgg cacgcccggt gcgcggccga catcgcgcgc
      241 gatcatttcg gcgccgaccg cgtgcttccc gcccttctcg aggtagcggg cagatgagta
      301 ccgaccgacc agccaccagc caccagcctc cagccaccag cgacgcaccc ttgcgaatcg
      361 cgcatatcgc cccggtcgcc accgaggtac cgccgctcaa gtcgggatcg gtcgagctga
      421 tgacgtcgct gctcaccgaa gggctggtcg cgaaaggcca ggacgtcacg ctcttcgcca
      481 cggccgattc gaagacgaag gccaagctgc acgcgatcta caagcaaggc tactggcacg
      541 acgagaacat gtggccgtgg gagctgtacg aaatgttgaa cctcgccgcg gccgtcgagc
      601 tggcgcgcga cttcgacatc atccattacg aagcggcgta ctacccgatg tcgctcgcct
      661 tcgcgcgtct gtcgccgacg ccaatggtcc agacgcttca tcattcgccg agcgaagcgg
      721 agatcggctt gtggtcgcgc taccccgagg cgcccttcgt cgcgatttcg aacgagcagg
      781 cgcgcttgct gcacggcctc aacgtcatcg gcacggtgct ccacggcatc gacaccgact
      841 ccttcacgtt tcaggcgaag ccggacgact atctgctctt tctcggccgc ttcaccgacg
      901 gcaaaggcgt cctgcaggcg atcgaagtgg ccaaacgcgt cggcatgcgc ctgattctcg
      961 ccgccgccga agacgagtac taccgcgaca aggtggcgcc gcatgtcgac ggcacccgcg
     1021 tcatctatta cggcgaagcg gatcatccgg cgaaagtgaa gctgtacggc ggggcgcgcg
     1081 cgctgctcta cccgatccag gcccgcgagc cgttcggcct cgtgctcgcc gaagcgatgg
     1141 cgtgcggcac gccggtcgcg gcgctcgatc gcggcgcggt ccgcgaggtc gtggacgagg
     1201 gcgtcaccgg cttcgtattc caagatctcg aggagatggt caacggactg ccgcgcgtct
     1261 tcgatctcga tcgacggcga gtccgagagc gtgcggtcat gcgcttcggc gtggaacgca
     1321 tggtcgatga gtacatcgcc gtgtatcgcc ggctcgtcgc cgcgcatgga gcctcccatg
     1381 gccgatgatc ctgctgaccc tcacagggcc ggcttgctcg ccggacggac gatcctcgcg
     1441 gtcttcgcgc atccagacga tgagtcactc gcgtgcggcg gcacgctggc gcgcgcggcc
     1501 gacgccggcg cgaaggtcgt gctgctctgc gccacgc
//
LOCUS       DASVHM010000242         2588 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1099980, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000242 DASVHM010000000
VERSION     DASVHM010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1099980"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..774)
                     /locus_tag="VF308_04675"
     CDS             complement(<1..774)
                     /locus_tag="VF308_04675"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF037026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX7435978.1"
                     /translation="MPATENTDTLAVHEHELGEQHLAGAMALSRAANWNQNETDWRMM
                     LRLGKGFGLSAADGSFVASIVVLPYEDKFAWMSMVLVAPEFRRLGYASRLLRRAIAYL
                     QARRLTPLLDATPAGHEVYLQEGLRDTWSFQRYSLPEARRVSGWRDVSGLKLRQLADD
                     DWPQILAMDLPAFGASRESLLRALAKRLPEAALVVRRRDSVCGYLLGRDGREARQLGP
                     LVAADLPAAQALLSHALERVPAPLYIDIVDRHTSLRSWAL"
     gene            complement(752..1729)
                     /locus_tag="VF308_04680"
     CDS             complement(752..1729)
                     /locus_tag="VF308_04680"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX7435979.1"
                     /translation="MTTPSPELGAELNRLSGDILVLGVGGKMGPTLARLARRAAPDKR
                     VVGVARFTEPGLREKLEAWGVECIACDLLERGEIERLPKIENVVFMAGRKFGSSGRED
                     LTWAMNVMVPAQVAEVFRASRIVAFSTACVYPYVDITSGGATEAVPAIPPSGDYANSC
                     VGRERMFEYFSRKHGTKGRLLRLEYAVDMRYGVLHDVGKKVFAGASIDLTMGHVNVIW
                     QGDANSMALRAFGQCTAPASALNLSGPETVSVRALAEAFGRHFNRQPVFTGKEAGTAW
                     LVNSAEAQRLFGRPGVPLNTMIAWQADWIARGGASLGKDTHFDARDGKY"
     gene            complement(1799..>2588)
                     /locus_tag="VF308_04685"
     CDS             complement(1799..>2588)
                     /locus_tag="VF308_04685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011000530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEX7435980.1"
                     /translation="KIERAEAVEPGALEDIMSACDGTMVARGDLAVEVGDASVPALQK
                     RMIRMAREHNKLTITATQMMESMVESPVPTRAEVSDVANAVLDGTDAVMLSAETASGL
                     YPVETVLSMSRICVVAESSEPVTLDREFLDRVFTRVDQSIAMAALFTAFHLKVNAIAA
                     LTESGSTALWMSRLNCGVPIYALTTRTATRYRCALFRDTYPLMVTHAGREREELLDEA
                     EGVLLRAGLVQKGDLIVLTIGEPIGKAGGTNTMKIVKVGENRRA"
BASE COUNT          421 a          889 c          866 g          412 t
ORIGIN      
        1 tagcgcccag ctgcgcaggc tggtgtgacg gtcgacgatg tcgatgtaca agggcgcagg
       61 cacgcgctcg agcgcgtgcg agagcagcgc ctgtgccgcg ggcaggtctg cggcgaccag
      121 ggggccgagc tgccgcgctt cgcgcccgtc ccggcctagc aggtaaccgc agacgctatc
      181 ccggcgccgg accaccagcg ccgcctcggg cagacgcttt gcgagcgcgc gcagcagact
      241 ttcgcggctg gcgccgaagg caggcagatc catagccaga atctgcggcc agtcgtcatc
      301 ggcgagctgt cgcagcttca gccccgacac gtcccgccag ccggacacgc gccgcgcctc
      361 ggggaggctg tagcgctgaa aactccaggt gtcgcgcaaa ccctcctgca ggtacacctc
      421 gtgtcctgcg ggcgtggcgt cgagcagcgg cgtaagccgg cgtgcctgca ggtacgcgat
      481 cgcgcggcgc agcaggcgcg aggcatagcc gaggcggcgg aattcgggcg ccaccagcac
      541 catgctcatc caggcaaact tgtcttcgta gggcagcact acgatactgg cgacaaaact
      601 gccgtcggca gccgacaggc caaaaccctt gcccaggcgc agcatcatgc gccagtcggt
      661 ctcgttctgg ttccagttcg ccgcgcgcga caaggccatg gcgccggcga gatgctgctc
      721 gcccagttcg tgctcgtgca ccgcgagcgt atcagtattt tccgtcgcgg gcatcgaaat
      781 gcgtgtcctt gcccaagctc gcgccgccgc gcgcgatcca gtccgcctgc caggcgatca
      841 tcgtgttcag gggcacgccg gggcggccga acaggcgctg cgcctccgca ctgttcacca
      901 gccaggccgt gcccgcttcc ttgccggtga acacgggttg ccggttgaaa tgccggccga
      961 aggcctcggc cagcgcgcgc acgctgaccg tctccgggcc gctcaggttg agcgcgctgg
     1021 cgggcgcggt gcattggccg aacgcgcgca gcgccatgct gttggcgtcg ccctgccaga
     1081 tgacgttgac gtgccccatg gtgaggtcga tgctcgcgcc ggcaaacacc ttcttgccga
     1141 cgtcgtggag cacgccatag cgcatgtcga ccgcgtactc caggcgcagc aagcgcccct
     1201 ttgttccgtg cttgcgcgaa aaatactcga acatgcgctc gcgcccgacg caggaattgg
     1261 cgtaatcgcc cgagggcggg atggccggca ccgcctcggt cgcgccgccc gaggttatgt
     1321 ccacgtaggg atagacgcag gcggtggaga aggcgacgat gcgcgaggcg cggaaaacct
     1381 cggccacctg tgccggcacc atcacgttca tcgcccaggt gaggtcctcg cgcccgctgg
     1441 agccgaactt gcgtccggcc atgaacacca cgttctcgat tttcggcaga cgctcgatct
     1501 cgccgcgctc gagcaaatcg caggcgatgc actccacgcc ccaggcttcc agcttctcgc
     1561 gcagcccggg ctcggtgaaa cgcgccacgc cgaccacgcg cttgtccggc gcggcgcgcc
     1621 tggcgagacg ggcaagagta ggccccatct tgccgccgac gccgaggacg aggatatcgc
     1681 cagaaagccg gttcagctcg gcgccgagtt cgggcgaggg tgtggtcatg acgtcttcga
     1741 gctgggcgac gtcggcaatg cgttcgggaa gtttcacgac aaaacctgcg ctgagatttc
     1801 aagcccggcg attctcgccg accttgacga tcttcatcgt gttggtgccg ccggccttgc
     1861 ctatgggctc gccgatagtg agcacgatca ggtcgccctt ttgcaccaga ccggcgcgca
     1921 acagcacgcc ttccgcctcg tccagcagtt cctcgcgctc gcgtccggcg tgggtcacca
     1981 tcagcggata ggtatcgcgg aacagcgcgc agcggtagcg cgtggcggtg cgcgtggtca
     2041 gcgcgtagat cggcacgccg cagttcaggc gcgacatcca cagcgcggtc gagcccgact
     2101 cggtcagcgc ggcgatcgcg ttcaccttga ggtgaaacgc ggtgaacagc gccgccatcg
     2161 cgatcgactg gtcgacgcgg gtgaacacac ggtcgagaaa ctcgcggtcg agcgtgaccg
     2221 gctccgagct ctcggcgacg acgcagatgc ggctcatcga caaaacggtc tcgaccgggt
     2281 acaggccgct cgcggtctcg gccgaaagca tgaccgcgtc ggtgccgtcg agcacggcgt
     2341 tggcgacgtc ggacacctcg gcacgggtgg gcaccgggct ctccaccatg gattccatca
     2401 tctgcgtcgc ggtgatggtg agcttgttgt gctcgcgcgc catgcggatc atgcgctttt
     2461 gcagcgccgg caccgaggcg tcgccgacct cgaccgcgag atcgccgcgc gccaccatgg
     2521 tgccgtcgca tgcagacatg atgtcctcca gcgcgcccgg ctcgaccgcc tcggcgcgct
     2581 cgatcttg
//
LOCUS       DASVHM010000243         3985 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1027555, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000243 DASVHM010000000
VERSION     DASVHM010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3985
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1027555"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1266)
                     /gene="ugpB"
                     /locus_tag="VF308_04690"
     CDS             complement(<1..1266)
                     /gene="ugpB"
                     /locus_tag="VF308_04690"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019430110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     substrate-binding protein UgpB"
                     /protein_id="HEX7435981.1"
                     /translation="MKSKSLVLSSLALTFALCTPAHAQVEIQWWHAMGGQLGEWVNDL
                     AKGFNESQKAYKVTPTFKGSYPETLTAGIAAFRAGNAPDILQVFEVGTATMMASKGAI
                     VPVGKVMKDSGLKFDPAAYIPAVVGYYTAPNGQMLSLPFNSSTTVFYYNKDAFKAAGL
                     DPNKPPVTWPEVALAAAKLKASGHKCPFTTSWVSWTQLESFSAWHNVEFATKNNGFGG
                     TDARLAFNGPLQVRHIQDLENMAKQGLFVYKGRNNTPDATFPSGECAMTTASAGLQGA
                     IKSTAKFEYGVAPLPYYPDVPGTPQNTVIGGASLWVMSGRPADHYKGIAAFFNYLSSP
                     EVQSASHKRTGYLPITTAAFKLTEASGFYKQNPGADVAVNQMIRKTTDKSRGIRLGNF
                     LQIRTIIDEELEQVWAGKAESKPALDNAVK"
     gene            1469..>3985
                     /locus_tag="VF308_04695"
     CDS             1469..>3985
                     /locus_tag="VF308_04695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015012739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3683 domain-containing protein"
                     /protein_id="HEX7435982.1"
                     /translation="MNAPLPLSLIAPRDEPLPAAPRLREIPYNYTSFSDREIVIRLLG
                     ARAWETLNRLRDERQTGRSARMLYEVLGDIWVVQRNPYLQDDLQGNPRRRRQLIEALH
                     HRLDEIEKRRTPAADAERDATVGGLLEASSVAVTAFADQFEAVASLRKRALKVLGRVT
                     AKGNIRFDGLHRVSHVTDATDWRVEYPFVVLLPDTEAEMAALVAGCIELGLTIIPRGG
                     GTGYTGGAIPLTWNSAVINTEKLEAMTEVEMVRLPGVEGEVATVWSEAGVVTQRVADA
                     AERAGFVFAVDPTSTEASCIGGNIAMNAGGKKAVLWGTALDNLASWRMVTPQATWLEV
                     TRLNHNLGKIHDVETASFELRHFDATGKALQRTERLDIPGPVFRKEGLGKDVTDKFLA
                     GLPGIQKEGCDGLITSARWIVHRMPKHTRTVCLEFFGNAKDAVPSIVDIKDYMFAEAK
                     SGGAILAGLEHLDDRYLKAVGYATKSKRGGLPKMVLFGDIAGDDPDVVARATSEVVRL
                     ANSRAGEGFVAVSAEARKKFWLDRKRTAAISRHTNAFKVNEDVVIPLPRMGEYTDGIE
                     RINIELSLANKLALVDALEEFFKTGKLPLGKGDDTSEIASAELLEDRVQQALALLQAV
                     RQEWRHWLADMDQKPAGGARTTFELLQDHTLRASWKTEIRAPLQAIFAGAALSPIVEA
                     CEKIHASVLRGRVWVALHMHAGDGNVHTNIPVNSDNYEMLQTAHRAVARIMKLARSLD
                     GVISGEHGIGITKLEFLTEAEIRDFTDYKRRVDPEGRFNKGKLLRDAVFDGDTVKADL
                     SNAYTPSFGLMGHESLIMQQSDIGEIATSIKDCLRCGKCKP"
BASE COUNT          679 a         1306 c         1348 g          652 t
ORIGIN      
        1 cttgaccgcg ttgtcgaggg ctggcttaga ctccgccttg ccggcccaca cctgctcgag
       61 ctcctcgtcg atgatcgtgc ggatctgcag gaagttgccc agccggatgc cgcgcgactt
      121 gtccgttgtc ttgcggatca tctggttgac ggcgacgtcg gcgcccggat tctgcttgta
      181 gaagccgctc gcctcggtga gcttgaacgc cgcggtcgtg atcggcagat agccggtgcg
      241 cttgtggctc gccgactgca cttcggggct ggacaggtag ttgaagaagg cggcgatgcc
      301 cttgtagtgg tctgccgggc gtcccgacat gacccacagg ctcgcgccgc cgatcacggt
      361 gttctgcggc gtaccgggaa cgtcggggta gtaggggagc ggggcgacgc cgtactcgaa
      421 cttggcggtc gacttgatgg cgccctggag gcccgccgag gcggtcgtca tcgcgcactc
      481 gcccgacggg aacgtcgcat cgggggtgtt gttgcggccc ttgtagacga agaggccctg
      541 cttggccatg ttctcgaggt cctggatgtg gcggacctgg agcgggccgt tgaaggcgag
      601 gcgcgcgtcg gtgccgccga agccgttgtt cttggtcgcg aactcgacgt tgtgccaggc
      661 cgagaaactc tcgagctgag tccagctgac ccagctggtc gtgaacgggc acttgtggcc
      721 gcttgccttc agtttggccg ccgcgagcgc gacttcgggc caggtcacgg gcggcttgtt
      781 cggatcgagg ccggcggcct tgaaggcatc cttgttgtag tagaagacgg tcgttgagct
      841 gttgaacggc aggctcagca tctggccgtt cggcgcggtg tagtacccca cgacggccgg
      901 gatgtacgcg gcgggatcga acttcagacc cgagtccttc atgaccttgc cgaccggaac
      961 gatcgcgccc ttactcgcca tcatcgtcgc ggtgccgact tcgaacacct gcaggatgtc
     1021 cggcgcattg ccggcccgga acgccgcgat ccccgccgtc agcgtctccg gatagctgcc
     1081 cttgaacgtc ggggtgacct tgtacgcctt ctggctctcg ttgaagccct tcgcgaggtc
     1141 gttgacccac tcgccgagct ggccgcccat cgcatgccac cactggattt cgacctgggc
     1201 atgggccggc gtgcacagtg cgaaggtcag tgcgagcgac gacagaacga gagacttgga
     1261 cttcatgacg actccgtgaa gagggctgag cgcgagtatc gagcgcgttt gtgacatccg
     1321 cgtttatccc gtctaagcgc ttcccgcggc aagcgggata accccgctgg cccgggcact
     1381 gcaatgcgtc agccgcgcgc catgttgcac tgcggtacga tcccgcttca aatccttcca
     1441 cgggtgtccg ccaggcttcc cggcgccgat gaatgccccg ctccccctga gcctgatcgc
     1501 cccacgtgac gagccattgc cggctgcgcc gcggctgcgc gagatcccgt acaactacac
     1561 ctcattctcc gatcgcgaga tcgtgattcg tctgctcggc gcgcgcgcct gggagacctt
     1621 gaaccggctg cgcgacgagc gccagaccgg gcgctcggcg cgcatgctct acgaggtgct
     1681 cggcgacatc tgggtcgtgc agcgcaaccc gtacctgcag gacgacctgc agggcaaccc
     1741 gcgccggcgc cgccaactga tcgaggcgct gcatcaccgc ctcgacgaga tcgagaagcg
     1801 ccgcacgccg gccgcggatg ccgagcgcga tgcgacggtc ggcggcctgc tcgaagcctc
     1861 gagcgtcgcg gtgacggcgt tcgccgacca gttcgaagcg gtggcgagcc tgcgcaagcg
     1921 cgccctcaag gtgctgggac gcgtcacggc gaaaggcaac atccgttttg acggcctgca
     1981 tcgcgtctcg cacgtcaccg atgcgaccga ctggcgcgtc gagtacccgt tcgtcgtgct
     2041 cctgcccgac accgaggccg agatggccgc gctcgtcgcc ggttgcattg agctcggcct
     2101 gacgatcatt ccgcgcggcg gcggcaccgg ctacacgggt ggtgcgatcc cgctgacctg
     2161 gaacagcgcc gttatcaaca ccgagaagct cgaggcgatg accgaggtcg aaatggtccg
     2221 cctgccgggc gtcgagggcg aggtcgcgac ggtctggagc gaagccgggg tcgtcaccca
     2281 gcgggtcgcg gatgcggccg agcgcgcggg cttcgtgttc gcggtcgacc cgacctcgac
     2341 cgaagcgtcc tgcatcggcg gcaatatcgc gatgaacgcc ggcggcaaga aggcggtgct
     2401 gtggggcacg gcgctcgaca atctcgcgtc gtggcgcatg gtcactccgc aggcgacctg
     2461 gctcgaggtc acgcgcctga atcacaacct cggcaagatc cacgatgtcg agaccgcgag
     2521 cttcgagttg cgccatttcg atgcgaccgg caaggcgctg cagcgcaccg agcgcctcga
     2581 cattccgggc ccggtgttcc gcaaggaagg cctcggcaag gacgtcacgg acaagtttct
     2641 cgccggcctg ccgggcatcc agaaggaagg ttgcgacggg ctgatcacgt cggcgcgctg
     2701 gatcgtgcat cgcatgccga agcacacgcg aacggtgtgc ctcgaattct tcggcaatgc
     2761 gaaggacgcg gtgccgtcga tcgtcgacat caaggactac atgttcgccg aggccaagtc
     2821 cggcggcgcg atcctcgccg ggctcgagca cctcgacgac cgctacctga aggcggtcgg
     2881 ctacgcgacc aagagcaagc gcggcggcct gccgaagatg gtgctgttcg gcgacatcgc
     2941 cggcgacgac cccgacgtgg tggcccgtgc gaccagcgaa gtcgtgcgcc tggcgaacag
     3001 ccgcgcaggc gaaggcttcg tcgcggtgag cgccgaggcg cgcaagaagt tctggctcga
     3061 ccgcaagcgc accgccgcga tcagcaggca cacgaacgcc ttcaaggtca acgaggacgt
     3121 cgtcattccg ctgccgcgga tgggcgagta caccgacggc atcgagcgca tcaacatcga
     3181 gctgagcctg gccaacaagc tggcgctcgt cgacgcgctg gaggagtttt tcaagaccgg
     3241 caaactgccg ctcggcaagg gcgacgatac aagcgagatc gcatcggccg agttgctgga
     3301 agaccgggtg cagcaggcgc tcgcactgct gcaggcggtg cgtcaggagt ggcggcactg
     3361 gctcgccgac atggaccaga agccagccgg cggcgcgcgc accactttcg agctgcttca
     3421 ggaccacaca ctgcgcgctt cctggaagac cgaaatccgc gcgccgctgc aggccatctt
     3481 cgcgggcgcg gcgctgagcc ccatcgtcga ggcgtgcgag aagatccacg ccagcgtgct
     3541 gcgcggccgg gtctgggtcg cgctgcacat gcacgccggc gacggcaacg tgcacaccaa
     3601 cattccggtc aacagcgaca actacgagat gctgcagacc gcgcaccggg cagtggcgcg
     3661 gatcatgaag cttgcgcgca gcctcgacgg cgtgatctcc ggcgagcacg gcatcggcat
     3721 caccaagctc gaattcctga ccgaagccga aatccgcgac ttcaccgact acaagcgtcg
     3781 cgtcgatccc gagggccgct tcaacaaggg caagctcctg cgcgacgccg tgttcgacgg
     3841 cgacacggtg aaggcggacc tctcgaacgc gtacacgccg agcttcggcc tgatgggcca
     3901 cgagtcgctg atcatgcagc agagcgacat cggcgagatc gcgacctcga tcaaggactg
     3961 cctgcgctgc ggcaagtgca agccg
//
LOCUS       DASVHM010000244         2196 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_667263, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000244 DASVHM010000000
VERSION     DASVHM010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_667263"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..583
                     /gene="dctP"
                     /locus_tag="VF308_04700"
     CDS             <1..583
                     /gene="dctP"
                     /locus_tag="VF308_04700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein DctP"
                     /protein_id="HEX7435983.1"
                     /translation="QGLMLLYTVPWPPQGIYVKKPIASAADLKGVKWRAYSPATARIA
                     ELVGAQPVTVQAAELSQALATGVVESYMSSGSTGYDSKTYEHIKYWYDTQAWLPKNAV
                     LVNKAAFDALDKASQAALLKAGADAETRGWALSQQKNGEYIDLLKKNGMTILPPSPQL
                     KADMKKVGDTMLKEWLDKAGPEGQAVVDAYKKL"
     gene            692..1144
                     /locus_tag="VF308_04705"
     CDS             692..1144
                     /locus_tag="VF308_04705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008906624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease subunit"
                     /protein_id="HEX7435984.1"
                     /translation="MVMLLVMVLLSIASRQLGFNVPGVDAYAGYMMAAAGFLALAHTL
                     KRGEHIRVTLLLSALHGGPRRGLEIWALAAAALLAALFAAYSCKLAWQSYTFHDISTS
                     NDATPLWLPELAMAIGTVVFAIAFVDELVLEIRGRRFIPVSDEALRNE"
     gene            1137..>2196
                     /locus_tag="VF308_04710"
     CDS             1137..>2196
                     /locus_tag="VF308_04710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HEX7435985.1"
                     /translation="MSDFAITALLVLSLFAILASGVWIGLTLSGVAWIGMQLFSSRPA
                     GDAMAVTIWGSASSWTLTALPLFIWMGEILFRTRLSQDMFRGLAPWMQRLPGRLLHTN
                     VVGCAIFAAVSGSSAATCATIGKMSLPELARRGYPDMMSVGSLAGAGTLGLLIPPSII
                     MIVYGVTADVSISQLFIGGVIPGIVLAGIFSLYIAGWSIRNAHLIPPPDAPMTLAEKL
                     RESRGLIPVVLLIIAVLGSIYAGIATATEAAGLGVLGSLLISMAQGSMNWQTFKDALM
                     GGTRLYCMIALILAGAAFLTLSMGYIGLPRHLAEWIATLGLSKFALILALTAFYVILG
                     CFLDGISMVVLTMGVIMPT"
BASE COUNT          319 a          784 c          716 g          377 t
ORIGIN      
        1 gcagggactc atgctgctct acacggtgcc gtggccgccg cagggcatct acgtcaagaa
       61 gccgatcgcc tcggctgccg acctgaaggg cgtcaagtgg cgcgcctaca gcccggcgac
      121 ggcgcgcatc gccgagctcg tcggcgccca gccggtgacg gtgcaggccg ctgagctgtc
      181 gcaggcgctg gcgaccggcg tcgtcgagag ctacatgtcg tcgggctcga ccggctacga
      241 cagcaagacc tacgagcaca tcaagtactg gtacgacacg caggcctggc ttccgaagaa
      301 cgccgtcctc gtcaacaagg cagctttcga tgccttggac aaggcatcgc aagctgcgct
      361 gttgaaggcc ggtgccgacg ccgagacgcg gggctgggcg ctctcgcagc agaagaacgg
      421 cgagtacatc gacctgctga agaagaacgg catgacgatc ctgccgccgt cgccgcagct
      481 caaggccgac atgaagaagg tcggcgacac gatgctgaag gaatggctcg acaaggccgg
      541 ccccgaaggc caggccgtcg tcgacgccta caagaagctc tagacgcggg cacggccggt
      601 gccggaagct tcgtcaacgc cggcgcgcgg ccccgtcggc cgcgccctcg accgcctcta
      661 cgacgcgagc gcggcgctcg ccgcggtggc gatggtgatg ctgctggtca tggtgctgct
      721 ctcgatcgct tcgcgccagc ttggcttcaa cgtgccgggc gtcgacgcct acgccggcta
      781 catgatggcc gccgcgggct tcctcgccct ggcgcatacc ttgaagcgcg gcgagcacat
      841 ccgcgtcacc ctgctcctgt cggcgctgca cggcggcccg cgccgcggcc tcgagatctg
      901 ggcgctcgcg gcggcggcac tgctggccgc gctcttcgcc gcctacagct gcaagctcgc
      961 ctggcagtcg tacaccttcc acgacatctc gaccagcaac gacgcgacgc cgctctggct
     1021 gcctgagctc gcgatggcga tcggcacggt cgtcttcgcg atcgccttcg tcgacgagct
     1081 ggtgctcgag atccgcggca ggcgcttcat cccggtcagc gacgaggcgc tgcgcaatga
     1141 gtgacttcgc gatcaccgcg ctgctcgtcc tctcgctctt cgcgatcctc gcgagcggcg
     1201 tctggatcgg cctgacgctc tcgggcgtcg cctggatcgg catgcagctg ttcagctcgc
     1261 ggcctgccgg cgacgcgatg gcggtgacga tctggggctc ggcgtcgagc tggacgctga
     1321 ccgccctgcc gctcttcatc tggatgggcg agatcctctt tcgcactcgc ctcagccagg
     1381 acatgttccg cggcctggcg ccgtggatgc agcgcctgcc cgggcgcctc ttgcacacga
     1441 acgtcgttgg ctgcgcgatc ttcgccgccg tgtcggggtc gagcgcggcg acctgcgcga
     1501 cgatcggcaa gatgagcctg ccggagctgg cccggcgcgg ctaccccgac atgatgtcgg
     1561 tcggctcgct cgcgggcgcc ggcacgctcg gcctgctcat cccaccgtcg atcatcatga
     1621 tcgtctacgg cgtcaccgcc gacgtctcga tctcgcagct cttcatcggc ggcgtgatcc
     1681 cgggcatcgt cctcgccggc atcttctcgc tctacatcgc cggctggtcg atcaggaacg
     1741 cgcacctgat cccgccgccg gacgcgccga tgacgctggc cgagaagctg cgcgaatcga
     1801 ggggcctgat cccggtggtg ctgctgatca tcgccgtgct cggctcgatc tacgccggaa
     1861 tcgccaccgc caccgaggcg gcgggcctgg gcgtgctcgg ctcgctcctt atctcgatgg
     1921 cgcagggctc gatgaactgg cagaccttca aggacgcgct gatgggcggc acccgcctgt
     1981 actgcatgat cgcgctgatc ctggccggcg ccgcgttcct caccctcagc atgggctaca
     2041 tcggcctgcc gcgccacctc gccgaatgga tcgcgacgct cggcctcagc aagttcgcgc
     2101 tgatcctcgc cctgaccgcc ttctacgtca tcctcggctg ctttctcgac ggcatctcga
     2161 tggtcgttct caccatgggc gtcatcatgc ctacgg
//
LOCUS       DASVHM010000245         2810 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_956685, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000245 DASVHM010000000
VERSION     DASVHM010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_956685"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            289..1569
                     /locus_tag="VF308_04715"
     CDS             289..1569
                     /locus_tag="VF308_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019140394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEX7435986.1"
                     /translation="MPFTASRQFKSAPRLLAKAKGMRYWTPEGRQVLDAVAGLWCVNA
                     GHARPKIVEAIAAQAAEMDFAPPFNMAHPKAFELAEKLVALAPAGLDKVFFTNSGSEA
                     VDTALKMAIAYHRARGEGQRTRLIGRERGYHGVNFGGISVGGIAGNRKSFGTMVGGVD
                     HLRHTHDLKKNAFSRGLPEHGAELADDLERIVTLHDASTIAAVIVEPVAGSTGVLLPP
                     KGYLERLRAICDKHGILLIFDEVITGFGRLGSAFAATHFKVTPDLMTVAKGITNGAVP
                     MGAVFAKGAIHDIFMTGPEHAVEFPHGYTYSAHPLACAAALGTLETYADEGLLTRGAK
                     MAPVFEHALHSLRESPNVIDIRNIGLVGGIELESIPGNPGKRGFDIFRECFERGVLIR
                     TTGDIIALSPPLIVEESHIDQAISTIADVLKTQR"
     gene            1647..2753
                     /gene="potA"
                     /locus_tag="VF308_04720"
     CDS             1647..2753
                     /gene="potA"
                     /locus_tag="VF308_04720"
                     /EC_number="7.6.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007837127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015417 - ABC-type polyamine transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter ATP-binding protein"
                     /protein_id="HEX7435987.1"
                     /translation="MSAEAFLQIKNIVKDFDGHRAVDNVSIDIAKGEVFALLGSSGCG
                     KTTLLRMLAGFETPTSGTITLDGRDLADLPPYERPMNMMFQSYALFPHLSVFDNIAFG
                     LRRDHLPKDEVRTRVEAMLKLVQLEPYAKRKPHQLSGGQQQRVALARSLAKKPQLLLL
                     DEPLGALDKKLREETQIELANIVHDVGVTCVMVTHDQEEAMTMASRIAVMSEGRFLQV
                     GAPAEIYETPASRFVADFIGNVNLMDGTLVEDEADHVVVDCGDIRHRVGHGITGTRGM
                     AVTVALRPEKIRLRRDGLKSTAVPEAGINRAHGTIKEIAYFGSFTVYHLQMASGRVLK
                     ISQSNVDRQPGAPLTWGDAAWASWTDLAQVVLTQ"
BASE COUNT          486 a         1006 c          896 g          422 t
ORIGIN      
        1 tcaatactga caatgactta gtgagagtgt ttcacattgc aggagaacat cctccaccat
       61 gagaaatttt gcggcactgc agcacggaat catctcacat gacgagatcc gcgttttccg
      121 atgtgaaagg acggcggcgt cgcagttctt ctagactctc tgttttcctc cgctgtccgc
      181 accggccagc aagcgcggga gacgcacatg cacaaggacc tcaaccccgc cgcggcgccg
      241 gccgccacgc cgtcgaccgc gccgccagcc aagctcgacg cctactggat gccgttcacg
      301 gccagccgcc agttcaagag cgcgccgcgc cttctggcca aggccaaggg catgcgttac
      361 tggacgcccg aaggccgcca ggtgctcgat gcggtcgccg gcctgtggtg cgtgaacgcc
      421 ggccatgcgc ggccgaagat cgtcgaggcg attgcggcgc aggccgcgga gatggacttc
      481 gcgcccccct tcaacatggc gcacccgaag gccttcgagc tcgccgagaa gctggtggcg
      541 ctcgcgcccg ccgggctcga caaggtgttc ttcacgaact cgggctccga ggccgtcgac
      601 accgcgctca agatggcgat cgcctatcac cgcgcccgcg gcgaagggca gcgcacgcgg
      661 ctgatcggtc gcgaacgcgg ctaccacggc gtgaatttcg gcggcatctc ggtcggcggc
      721 atcgccggca accgcaagag cttcggcacc atggtcggcg gcgtcgacca cctgcgccac
      781 acccacgacc tgaagaagaa cgcgttctcg cgcggcctgc ccgagcacgg cgccgagctc
      841 gccgacgacc tcgagcgcat cgtcaccctg cacgatgcat cgacgatcgc cgccgtcatc
      901 gttgagccgg tcgccggatc cacgggcgtg ctgcttccgc cgaagggcta cctcgagcgg
      961 ttgcgcgcga tctgcgacaa gcacggcatc ctgctgatct tcgacgaggt catcaccggt
     1021 ttcggccgcc tcggctctgc gttcgcggcg acgcacttca aggtcacccc cgacctgatg
     1081 acggtcgcca agggcatcac caacggcgcc gtgccgatgg gcgcggtgtt cgccaagggc
     1141 gcgattcacg acatcttcat gaccggcccg gagcacgcgg tcgagttccc gcacggctac
     1201 acctactccg cgcacccgct cgcctgcgcg gcggcgctcg gcacgctcga gacctacgcc
     1261 gacgaaggcc tgctgacgcg cggcgcgaag atggcgccgg tgttcgagca cgcgctccac
     1321 tcgctgcgcg agtcgccgaa cgtgatcgac atcaggaaca tcggcctggt cggcggcatc
     1381 gagctcgagt cgatcccggg caaccccggc aagcgcgggt tcgacatctt ccgcgagtgc
     1441 ttcgagcgcg gcgtcctgat ccgcacgacc ggcgacatca tcgccctgtc gccgccgctg
     1501 atcgtcgagg aatcgcacat cgaccaggcg atcagcacga tcgccgacgt gctgaagacg
     1561 cagcgctgag ctcaccctcc ggcgccttcg tgcgcgacgc cgacggtcgt cgcgcggccg
     1621 tcccgctttg tgcccgacaa gtgccgatga gcgcagaagc cttcctgcag atcaagaaca
     1681 tcgtcaagga cttcgacggc caccgcgccg tcgacaacgt ctcgatcgac atcgccaagg
     1741 gcgaggtgtt cgccctcctc ggctcgtcgg gctgcggcaa gacgacgctg ctgcgcatgc
     1801 ttgccggctt cgagacgccg acctccggaa cgatcactct ggacggccgc gacctcgccg
     1861 acctgccgcc ctacgagcgg ccgatgaaca tgatgttcca gagctacgcg ctcttcccgc
     1921 atctttcggt gttcgacaac atcgccttcg gcctgcgtcg cgaccacctg ccgaaggacg
     1981 aagtccgaac ccgcgtcgag gcgatgctga agctggtcca gctcgagccc tacgcgaagc
     2041 gcaagcccca ccagctctcg ggcggccagc agcagcgcgt cgccctggcg cggagcctcg
     2101 ccaagaagcc gcagctgctc ctcctcgacg agccgctcgg cgcgctcgac aagaagctgc
     2161 gcgaggaaac ccagatcgag ctcgccaaca tcgtccacga cgtcggcgtc acctgcgtga
     2221 tggtcacgca cgaccaggaa gaggcgatga cgatggcctc gcgcatcgcc gtgatgagcg
     2281 agggccggtt cctgcaggtc ggcgcgccgg ccgagatcta cgagacgccg gcgagccgct
     2341 tcgtcgccga cttcatcggc aacgtcaacc tgatggacgg aacgctggtc gaggacgaag
     2401 ccgaccacgt cgtcgtcgac tgcggcgaca tccgccatcg cgtcggccac ggcatcaccg
     2461 ggacgcgcgg catggcggtg acggtggcgc tccggccgga aaagattcgg ctccggcgcg
     2521 acggcctgaa atcgaccgcc gtgccggagg ccggcatcaa ccgcgcccac ggcacgatca
     2581 aggagatcgc ctatttcggc agcttcacgg tctatcacct gcagatggcg agcggccgcg
     2641 tcctcaagat cagccagagc aacgtcgatc gccagccggg cgcgccgctg acctggggcg
     2701 acgccgcctg ggcgagctgg accgacctcg cccaggtggt gctgacgcaa tgaaggtcgg
     2761 ctcccggcgc gggcgcttgg ccgtcatcgc ggtcccgtac gcgtggctgc
//
LOCUS       DASVHM010000246         6253 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1388555, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000246 DASVHM010000000
VERSION     DASVHM010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6253
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1388555"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            95..1540
                     /locus_tag="VF308_04725"
     CDS             95..1540
                     /locus_tag="VF308_04725"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006465328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HEX7435988.1"
                     /translation="MDTRVYPNTQLYIDGEWRAARSGRTMPVVNPATGDTIGSLAFAE
                     RADLDHALEAAARGFETWKRVSAYERSKIMRKAANLLRERIDHVAMLMTMEQGKTLAE
                     AKAEINNGADTIDWFAEEGRRTYGRVIPARAEGIYQLVVKEPVGPVAAFTPWNFPINQ
                     IVRKLSAALAAGCSIIVKAPEETPASPAELIRAFADAGVPAGAVGLVYGDPAAISSYL
                     IPHPVIRKISFTGSTVVGKQLAALAGQHMKRVTMELGGHAPVIVFDDADVTIAAKAMA
                     ASKFRNAGQVCISPTRFLVQEGVYDSFVEQFVANAKALKVGNGLDKDTRMGALANPRR
                     AKAMEVNLEDAGKHGGKLRTGGHAIGDKGNFWEPTVVTGLDNDAKAMNEEPFGPLAII
                     NPFRTFDDAVKEANRLPFGLAAYAWTKSAKTANAIANAVETGMISINHVGLGIPETPF
                     GGVKDSGYGSEGGSEAIESYLNPKFITQAGI"
     gene            1558..1836
                     /locus_tag="VF308_04730"
     CDS             1558..1836
                     /locus_tag="VF308_04730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019654949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2164 domain-containing protein"
                     /protein_id="HEX7435989.1"
                     /translation="MAIELAKEARQEAIKSIERYFQEHLDERIGNIAAGALLAFLLEE
                     IGPSIYNRAVADVQERLGARIAELDIEVHEDEFGYWRKFEKDKQRRGK"
     gene            complement(1847..3241)
                     /locus_tag="VF308_04735"
     CDS             complement(1847..3241)
                     /locus_tag="VF308_04735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013900217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HEX7435990.1"
                     /translation="MLKVFFLLFMSSGLPVAIAMAGASLAYILVSGNLPPFVIIHRMV
                     GGIDSFPLLAVPFFILAGNLMNNAGITTRIYNFALALVGWMKGGLGHVNIIGSVIFAG
                     MSGTAIADAAGLGTIEIKAMKEHGYSTEFSVGVTAASATLGPIIPPSLPFVIYGMMAN
                     ASVGALFLAGILPGALMAVLMMLTVAYYAHKNKWGADVKFSASRFGKAMVELAVVVGW
                     PLLLWAVVSLVGAPPQISVFVALALLFVLDRIYRFEALLPIMTPVLLIGGMTTGLFTP
                     TEGAIAACVWAMILGFAWYRTLNWKMFVKVCLDTVETTSTVLFIVAAASIFGWMLTAT
                     GVTADIAAWVLAFTKEAWVFLLLANLLMLFVGCFLEPTAAITILVPILLPIAVQLGVD
                     PIHFGLVMVLNLMIGLLHPPMGMVLFVLARVAGLSFERTTMAILPWLVPLLVSLGIIT
                     YAPKLVLWLPKMFF"
     gene            complement(3255..3812)
                     /locus_tag="VF308_04740"
     CDS             complement(3255..3812)
                     /locus_tag="VF308_04740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HEX7435991.1"
                     /translation="MAEEKIIDDEGHFHVEDEVVDLSSTIAEGWAALGLFWLLALTVF
                     YQFVTRYVFNDSASWTEEIARYLLIAVVFVGATIGVAKNSQIQVDFFYRHMPVAVARW
                     LSRAVDVLRIAFFATAVVLTGQMMLKLGSNTRMTIVDAPMNLVYGVVLLGFAAMTFRS
                     IQVALVHWRRGYSVLERPMTTLADQ"
     gene            complement(3825..4919)
                     /locus_tag="VF308_04745"
     CDS             complement(3825..4919)
                     /locus_tag="VF308_04745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006221637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid TRAP transporter substrate-binding
                     protein SiaP"
                     /protein_id="HEX7435992.1"
                     /translation="MLAGLRRTVPCFGFAERGARTRRRLPFYLTETADDQPSFRTQDP
                     RRLCRGLGALAAFGPAQAQTKLKWAHVYETSEPYHKWSVWAGDEIKKRTNGRYEVQVF
                     PASSLGKESDINQGLTLGTVDIILTGASFAARSYPPLAVSYFPFIFRDAEHQFKYAKS
                     DVFKELAKGYDDKTSNHITALTYYGARQVTSTAARPITKPEDMKGLKIRVPDAPAYLA
                     FPKALGANPTPIAFAEVYLALQNGTVDAQENPLPTIEAKKFYEVQKNISLTGHIIDSL
                     LTVVSGQVWTKLSAEDKKIFTEVTEEAAERASREIAAAEIRLVDEFKKKGNNVIVVDK
                     NAFREAVLKTTKPADQGYRQQDYDRIVNLK"
     gene            4982..5716
                     /locus_tag="VF308_04750"
     CDS             4982..5716
                     /locus_tag="VF308_04750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007839005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7435993.1"
                     /translation="MRLQGKTALVTAAGQGIGRASALALAAEGAQVWATDIDAALLER
                     YAGVPRISVACLDVLDRGAIGALFATLPRLDVLFNCAGIVHNGSALDASDADLELAFA
                     LNVRSQLWTIQAALPGMLAHGGGSIINMASIASSIKGLANRCVYGLTKAAVIGLTKSV
                     AADYVKQGIRCNALCPGTVDTPSLAGRIRAYDDPVAARQAFVDRQPMGRLALAEEIAP
                     MVVYLASDESRFATGQAFCVDGGMTI"
     gene            complement(5743..>6253)
                     /locus_tag="VF308_04755"
     CDS             complement(5743..>6253)
                     /locus_tag="VF308_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HEX7435994.1"
                     /translation="LSIRILFASLKGTVAISAMILFIIVGATTFAQILSFSGASNGLS
                     QQITGAGLAPWAVIAAMMLMLIFLGIFVDQVSMMMITLPIFMPVVQALGVDLVWFGVL
                     FLICMQMGLLLPPHGLLLMTMKGVAPPSVTMLDIFRAVVPFLVMSVLLLALVFLVPAV
                     ATWLPALIG"
BASE COUNT         1136 a         2083 c         2135 g          899 t
ORIGIN      
        1 cccggccgcg cgctcgcggc cgcccccgcg ccggcgccgc gtcgcgataa tcgaccgcaa
       61 ccctccccct cacgcactcg ttcccggaga cagcatggac acccgcgtct atcccaatac
      121 ccagctctac atcgacggcg aatggcgcgc cgcgcgctcc ggccggacga tgccggtcgt
      181 caatcccgcc accggcgaca ccatcggcag cctcgccttc gccgagcgcg ccgacctcga
      241 ccacgccctc gaggcggcgg cgcgcggctt cgagacctgg aagcgcgtca gcgcctacga
      301 gcgctcgaag atcatgagga aggccgccaa cctgctgcgc gagcgcatcg accacgtcgc
      361 gatgctgatg acgatggagc agggcaagac gctcgccgag gcgaaggccg agatcaacaa
      421 cggcgccgac acgatcgact ggttcgccga ggaagggcgg cgcacgtacg ggcgcgtcat
      481 cccggcgcgc gccgagggca tctaccagct cgtcgtcaag gagccggtcg gcccggtcgc
      541 ggcgttcacg ccgtggaact tcccgatcaa ccagatcgtc cgcaagctgt cggcagcgct
      601 cgccgccggc tgctcgatca tcgtcaaggc gccggaggag acgccggcgt ctccggccga
      661 gctgatccgc gccttcgccg acgccggcgt tccggcgggc gcggtcggcc tcgtctacgg
      721 cgacccagcc gcgatctcgt cgtacctgat cccgcacccg gtcatccgca agatctcctt
      781 caccggctcg accgtcgtcg gcaagcagct cgccgcgctc gccggccagc acatgaagcg
      841 cgtgacgatg gagctcggcg gccacgcgcc ggtgatcgtc ttcgacgacg ccgacgtgac
      901 gatcgccgcc aaggcgatgg cggcgagcaa gtttcgcaac gccggccagg tatgcatctc
      961 gccgacgcga tttctggtgc aggagggggt ctacgacagc ttcgtcgagc agttcgtcgc
     1021 caatgccaag gcgctcaagg tcggcaacgg actcgacaag gacacgcgca tgggcgcgct
     1081 cgccaacccg cgccgcgcga aggcgatgga ggtcaatctc gaggacgccg gcaagcacgg
     1141 cggcaagctc cgcaccggcg gccacgcgat cggcgacaag ggcaacttct gggagccgac
     1201 cgtcgtcacc gggctcgaca acgacgccaa ggcgatgaac gaggagccgt tcggcccgct
     1261 cgcgatcatc aacccgttca ggaccttcga cgacgccgtc aaggaagcga accgcctgcc
     1321 gttcggcctc gccgcgtacg cgtggacgaa gtcggcgaag accgcgaacg cgatcgccaa
     1381 cgcggtcgag accggcatga tctcgatcaa ccacgtcggc ctcggcattc ccgagacgcc
     1441 gttcggcggc gtcaaggatt cgggctacgg ctccgagggc ggcagcgagg cgatcgagtc
     1501 gtacctcaat ccgaagttca tcacccaggc cggcatctag gcggagcgct cgggctcatg
     1561 gcgatcgagc tcgcgaagga agcgcgccag gaggcgatca agtctatcga gcgctacttc
     1621 caggagcacc tggacgagcg catcggcaac atcgccgccg gcgcgctgct cgccttcctg
     1681 ctcgaggaga tcggcccctc gatctacaac cgcgccgtcg ccgacgtcca ggagcggctc
     1741 ggcgcgcgca tcgccgagct cgacatcgag gtccacgaag acgagttcgg ctactggcgc
     1801 aagttcgaga aagacaagca gcgccgcggc aagtagccgc gacggctcag aagaacatct
     1861 tcggcagcca gagcacgagc ttgggcgcgt aggtgatgat gcccaggctg acgaggagcg
     1921 gcaccagcca cggcaggatc gccatcgtcg tgcgctcgaa cgagaggccg gcgactcgcg
     1981 ccagcacgaa cagcaccatt cccatcggcg gatggagcag gccgatcatc aggttgagca
     2041 ccatgaccag gccgaaatgg atcgggtcga cgccgagctg gacggcgatc ggcagcagga
     2101 tcggcaccag gatcgtgatc gccgccgtcg gctcgaggaa gcagccgacg aaaagcatca
     2161 gcaggttggc gagaagcagg aacacccacg cttccttggt gaaggcgagc acccaggcgg
     2221 cgatgtcggc ggtgacgccg gtggccgtca gcatccagcc gaagatcgac gcggcggcga
     2281 cgatgaagag gaccgtgctg gtcgtctcga cggtgtcgag gcagaccttg acgaacatct
     2341 tccagttgag cgtgcggtac caggcgaagc cgaggatcat cgcccagacg caggcggcga
     2401 tcgcgccttc ggtaggcgtg aagagccccg tcgtcatgcc gccgatgagc agcaccggcg
     2461 tcatgatcgg cagcagcgcc tcgaagcggt agatccggtc gagcacgaac agcagcgcca
     2521 gggcgacgaa gaccgagatc tgcggcggcg cgccgaccag cgagaccacc gcccagagca
     2581 gcagcggcca gccgacgaca acggcgagct cgaccatcgc cttgccgaag cgcgatgccg
     2641 agaacttgac gtcggcgccc catttgttct tgtgcgcgta gtaggcgacg gtgagcatca
     2701 tcaacaccgc catcagcgcg ccgggcagga tgccggcgag gaagagcgcg ccgaccgagg
     2761 cgttggccat catcccatag atgacgaacg gcaggctcgg cggaatgatc ggcccgagcg
     2821 tcgccgaggc ggcggtcacg ccgaccgaga actcggtcga atagccgtgc tccttcatcg
     2881 ccttgatctc gatcgtgccg aggccggcgg cgtcggcgat cgccgtgccg ctcatgccgg
     2941 cgaagatcac cgagccgatg atgttgacgt ggccgaggcc gcccttcatc cagccgacga
     3001 gggcgagcgc gaagttgtag atgcgcgtcg tgatgcccgc gttgttcatc aggttgccgg
     3061 cgaggatgaa gaacggcacc gcgagcagcg gaaagctgtc gatgccgccc accatccggt
     3121 ggatgatgac gaagggcggc aggttgcccg agaccaggat gtaggcgagc gacgcccccg
     3181 ccatggcgat ggccaccgga aggccgctgc tcatgaagag caggaagaag actttcagca
     3241 tggcggcgcg cggcctactg gtcggcgagc gtggtcatgg ggcgctcgag gacgctgtag
     3301 ccgcggcgcc agtggacgag cgcgacctgg atcgaacgaa aggtcatggc cgcgaagccg
     3361 agcaggacga cgccgtagac gaggttcatg ggcgcgtcga cgatcgtcat gcgcgtgttg
     3421 ctgccgagct tgagcatcat ctgcccggtc aggacgacgg cggtggcgaa gaacgcgatg
     3481 cgcagcacgt cgaccgcacg cgacagccag cgggcgacgg ccaccggcat gtggcgatag
     3541 aagaagtcga cctggatctg cgagttcttg gcgacgccga tcgtcgcgcc gacgaagacg
     3601 accgcgatca gcaggtagcg cgcgatctcc tcggtccacg acgccgagtc gttgaatacg
     3661 tagcgcgtga cgaactgata gaagaccgtc agcgcgagca gccagaagag gccgagagcc
     3721 gcccagccct cggcgatcgt cgacgacagg tcgaccacct cgtcctcgac gtggaaatgg
     3781 ccctcgtcgt cgatgatctt ttcttcggcc aaccggcctc cgggctactt gaggttgacg
     3841 atccggtcgt agtcctgctg gcgatagcct tggtcggccg gcttggtcgt cttcagcacc
     3901 gcctcgcgga aggcattctt gtcgacgacg atgacgttgt tgcccttctt cttgaactcg
     3961 tcgacgaggc ggatctcggc ggccgcaatc tcccggctcg cgcgctcggc ggcctcttcc
     4021 gtcacctcgg tgaagatctt cttgtcctcg gccgacagct tggtccagac ctggcccgag
     4081 acgaccgtca gcagcgaatc gatgatgtgg ccggtgagcg agatgttctt ctgcacctcg
     4141 tagaacttct tggcctcgat cgtcggcagc gggttctcct gcgcgtcgac cgtgccgttc
     4201 tgcagcgcca ggtagacctc ggcgaaggcg atcggcgtcg ggttggcgcc gagcgccttc
     4261 gggaacgcca ggtaggccgg cgcgtcggga acgcggatct tcagcccctt catgtcctcg
     4321 ggcttggtga tcggccgggc cgcggtcgat gtgacctggc gtgcgccgta gtaggtgagc
     4381 gcggtgatgt ggttcgaggt cttgtcgtcg tagcccttgg cgagctcctt gaagacgtcg
     4441 ctcttggcgt acttgaactg gtgctcggcg tcgcggaaga tgaacggaaa gtacgagacg
     4501 gcgagcggcg gatagctgcg cgcggcgaag ctcgcgccgg tcaggatgat gtcgacggtg
     4561 ccgagcgtca gcccctggtt gatgtccgat tccttgccga ggctcgacgc cgggaacacc
     4621 tgcacctcgt agcggccgtt ggtgcgcttc ttgatctcgt cgccggccca gaccgaccac
     4681 ttgtggtacg gctccgaggt ctcgtagacg tgcgcccact tgagcttggt ctgcgcctgc
     4741 gcggggccga acgcggcgag cgcgcccagg ccacggcaca gacgacgagg gtcctgcgtg
     4801 cgaaacgatg gctggtcatc tgctgtctcc gtgaggtaga agggaagtcg ccgccgggtc
     4861 ctggcgccgc gctcggcgaa gccgaagcac ggtacggtcc ggcgcaggcc ggcgagcacg
     4921 gtgcaaaccc tgaagcggcg gccaagcttt cccctatcga ctcacgccac gaggacacac
     4981 catgagactg caaggcaaga cggcgctggt gacggccgcg ggacagggca tcggccgcgc
     5041 cagcgcgctc gcgctggcgg ccgagggcgc gcaggtctgg gcgaccgaca tcgacgccgc
     5101 gctgctcgag cgctacgccg gtgttccccg catcagcgtc gcctgcctcg acgttctcga
     5161 ccgcggcgcg atcggcgcgc tgttcgcgac gctgccgagg ctcgacgtgc tgttcaattg
     5221 cgccggcatc gtccacaacg gcagcgccct cgacgccagc gacgccgacc tcgagctcgc
     5281 cttcgcgctc aacgtgcgct cgcagctttg gacgatccag gcggcgctgc ccggcatgct
     5341 ggcccacggc ggcggcagca tcatcaacat ggcgagcatc gcctcgagca tcaagggact
     5401 ggcgaaccgc tgcgtctacg gcctcaccaa ggcggcggtg atcggcctga ccaagagcgt
     5461 cgccgccgac tacgtgaagc agggcatccg ctgcaacgcg ctctgcccgg gaacggtcga
     5521 cacgccgtcg ctcgccgggc ggatccgggc ctacgatgac ccggtcgcgg cacgccaggc
     5581 cttcgtcgac cgccagccga tgggccggct cgcgctcgcc gaggagatcg cgccgatggt
     5641 cgtgtatctc gcgagcgacg agtcgaggtt cgcgaccggg caggcattct gcgtcgacgg
     5701 cggcatgacg atctgacccg cgccgcgccg gccgcgccgg cgtcagccga tcagcgccgg
     5761 cagccaggtc gcgacggcag ggacgaggaa gacgagcgcg agcagcagca cgctcatgac
     5821 gaggaacggc acgaccgcgc ggaagatgtc gagcatcgtc accgacggcg gcgcgacgcc
     5881 cttcatcgtc atcagcaaga ggccgtgcgg cggcagcagc aggcccatct gcatgcagat
     5941 caggaacagc acgccgaacc agacgaggtc gacgccgagc gcttgcacga cgggcatgaa
     6001 gatcggcagg gtgatcatca tcatgctgac ctggtcgacg aagatgccga ggaagatcag
     6061 catcagcatc atcgccgcga tcaccgccca cggcgccagg ccggcgccgg tgatctgctg
     6121 cgacaggccg ttcgaggcac ccgagaacga gaggatctgc gcgaacgtcg tcgcgccgac
     6181 gatgatgaac aggatcatcg ccgagatcgc gaccgtcccc ttcagcgacg cgaacaggat
     6241 gcggatgctg agc
//
LOCUS       DASVHM010000247         1593 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_667650, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000247 DASVHM010000000
VERSION     DASVHM010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_667650"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1593)
                     /locus_tag="VF308_04760"
     CDS             complement(<1..>1593)
                     /locus_tag="VF308_04760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008903003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HEX7435995.1"
                     /translation="KAPDCFYVERALRSRMKIPVFHDDQHGTAIVVGAGVLNALKVSG
                     KTIRQVKLVTSGAGAAALACLGLLVKLGLPRENIWVTDLAGVVYEGRTELMDEDKVLF
                     AQKTPHRTLADVIAGADIFLGLSAAGVLKGQMVATMAANPVIFALANPTPEILPEEVL
                     EVRSDAIIATGRSDYSNQINNVLCFPYIFRGALDSGATTITVEMEIAAVHAIAELAQA
                     EQSEVVAAAYAGVALSFGRDYLIPKPFDPRLMMRIAPAVAKAAADSGVAARPIADLDA
                     YRAKLQTFVYASGATMRPIFSMAKSARHKRIAYAEGEEERVLRAVQVVVDENVARPTL
                     IGRPEVIAQRIAKFGLRLAAGHDYDVVNTERDDRYRIYWQTYHRMTARKGVTVQLAKI
                     EMRRRLTLIGSMLLKTGEVDGMLCGTWGGTAMHLQYIDQVIGLREGAKTYACMNGLIL
                     PGRQVMLVDTHVNYDPSAEQLAEITVMAAEEMKRFGLHPKAALLSHSNFGTSNQPSAV
                     KMREALALLREQAPWLEVDGEM"
BASE COUNT          237 a          529 c          539 g          288 t
ORIGIN      
        1 tgcatttcgc cgtcgacctc gagccatggc gcctgctcgc gcaagagcgc cagcgcctcg
       61 cgcatcttca ccgccgaagg ctggttgctg gtgccgaaat tgctgtgcga gagcagcgcg
      121 gccttcggat gcaggccgaa gcgcttcatt tcctccgccg ccatcaccgt gatctcggca
      181 agctgctcgg cgctcgggtc gtagttgacg tgggtgtcga ccagcatcac ctggcgcccg
      241 ggcaggatca gcccgttcat gcaggcgtag gtcttggctc cctcgcgcag gccgatcacc
      301 tgatcgatgt actgcaggtg catcgccgtg ccgccccacg tgccgcagag catgccgtcg
      361 acctcgccgg tcttgagcag catcgagccg atgagcgtca gacggcgccg catctcgatc
      421 tttgcgagtt gcacggtcac gcccttgcga gccgtcatgc ggtggtaggt ctgccagtag
      481 attcggtagc gatcgtcgcg ttcggtgttg acgacgtcgt agtcgtgccc agccgccaga
      541 cgcagcccga atttcgcgat gcgctgggcg atcacctcgg gcctgccgat cagcgtcggc
      601 cgggccacat tttcgtcgac gaccacctgg actgcgcgca gcacgcgttc ctcctcgcct
      661 tcggcgtagg cgatgcgctt gtggcgggcg ctcttggcca tgctgaagat cggccgcatc
      721 gtcgcgcccg aggcgtagac gaaggtctgg agcttggcgc ggtaggcatc caggtcggcg
      781 atcggtcgcg ccgcgacgcc cgaatcggcc gcggctttcg ccacggccgg cgcgatccgc
      841 atcatcagcc gcggatcgaa cggcttcggg attaggtagt cgcgcccgaa gctgagcgcg
      901 acgccggcgt acgcggcggc gaccacttcg ctctgttcgg cctgcgccag ctcggcgatg
      961 gcgtgcaccg cggcgatctc catctcgacc gtgatcgtcg tcgcgccgga atcgagcgcg
     1021 ccccggaaga tgtacggaaa gcacaggacg ttgttgatct ggttggaata gtcgctgcgg
     1081 ccggtggcga tgatcgcgtc gctgcgcacc tccagcactt cctcgggcag gatttcgggg
     1141 gtcgggttgg caagtgcgaa gatcaccggg ttcgcggcca tcgtcgcgac catctgaccc
     1201 ttcagcacgc cggcggccga gaggccgaga aagatgtccg cgcccgcgat cacatcggcg
     1261 agcgtgcgat gcggcgtctt ctgcgcgaac aagaccttgt cctcgtccat cagttcggtg
     1321 cgcccctcgt agaccacgcc ggccaggtcg gtcacccaga tgttttcgcg cggcaggccc
     1381 agcttcacga ggagtccgag gcaggcgagt gccgcggcgc cggcgccgga ggtcacgagc
     1441 ttgacctggc ggatggtctt gccgctcacc ttgagcgcat tcagcacgcc ggcgccgacg
     1501 acgatggcgg tgccgtgctg gtcgtcatgg aagaccggga tcttcatgcg cgagcgcagc
     1561 gcgcgctcga cgtagaagca gtccggcgcc ttg
//
LOCUS       DASVHM010000248         2833 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_305525, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000248 DASVHM010000000
VERSION     DASVHM010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2833
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305525"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VF308_04765"
     CDS             complement(<1..331)
                     /locus_tag="VF308_04765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7435996.1"
                     /translation="MTPGLAAARWTIALCVGLLALASTRLPAQEASPARHVVSAVRLV
                     EQLDLDNTDYAHGQGSVTWTGTVASHTDCSGFIDHLLMHDDGLTPEDFKRWFGSRKPS
                     AARYHDAI"
     gene            complement(366..1544)
                     /gene="metK"
                     /locus_tag="VF308_04770"
     CDS             complement(366..1544)
                     /gene="metK"
                     /locus_tag="VF308_04770"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEX7435997.1"
                     /translation="MSNDFLFTSESVSEGHPDKVADQISDAILDAIFAVDPRSRVAAE
                     TLCNTGLVVLAGEITTNAHVDYMQVARDTLKRIGYDNTEYGIDYKGCAVLVAYDKQSN
                     DIAQGVDHASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGR
                     LPFLRPDAKSQVTMRYVDGKPHSIDTVVLSSQHAPEMSLGTKMKPEFTEAVIEEIIKP
                     VLPKEWLKDTKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPS
                     KVDRSAAYAARYVAKNIVAAGLAKQCQIQVAYAIGVARPMNVTVYTEGTGKIPDDRIA
                     ALVHDFFDLRPKGIIQMLDLLRPIYEKTAAYGHFGREEPEFTWERTDKAKALRAAAGL
                     "
     gene            1717..2583
                     /locus_tag="VF308_04775"
     CDS             1717..2583
                     /locus_tag="VF308_04775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013900099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX7435998.1"
                     /translation="MGLLRWLSGWPLFWLHRLGDVAGWLAYAFSPTYRRRFLANAHQA
                     GLGPAQYRPAVAQAGRLLMELPLLWLRPLEEPILPRVRWEGLALIVDALAQGRGVVFL
                     TPHLGCFEVTAQAYAERFGAEFGPITVLYRPARKAWLRPLVAGSRVRPGLVTAPATLA
                     GVRQMIRALRRGEAIGLLPDQVPPEGLGVWAPFFGKPAYTMTLAARLVQQTCAVPLVA
                     WGERLPRGAGYVVHVSAFDETLPKEPSAQAESAAAVNRAMERLILQSPQQYLWGYHRY
                     KEPARRAPGSDI"
     gene            2607..>2833
                     /locus_tag="VF308_04780"
     CDS             2607..>2833
                     /locus_tag="VF308_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis acyltransferase"
                     /protein_id="HEX7435999.1"
                     /translation="MGARILLGVLWLLHWLPLGVQAALGRALGGVLHGLAGSRRRIAL
                     RNVELCFPEQSAAARRRLVREHFRWLGRSIV"
BASE COUNT          386 a          935 c          997 g          515 t
ORIGIN      
        1 cgatcgcatc gtgatagcgc gcggcgctcg gcttgcggct gccgaaccag cgcttgaagt
       61 cttcgggcgt cagaccgtcg tcgtgcatca acaggtggtc gatgaagccg gaacagtcgg
      121 tgtgcgaagc gaccgttccc gtccacgtga cactgccctg gccgtgcgca tagtcggtgt
      181 tgtcgaggtc gagctgctcg acgaggcgca cggccgagac gacgtgacgc gcgggggaag
      241 cctcctgcgc cggcagtctg gtcgaggcga gcgccagaag accgacgcac agcgcgatgg
      301 tccagcgcgc tgcggccaat ccaggcgtca tggtcttcct gcgccgcaac gcggctgaac
      361 tggacttaca accccgccgc tgcgcgcagc gctttggcct tgtcggtgcg ctcccaggtg
      421 aattccggct cctcgcgtcc gaagtgaccg tacgccgcgg tcttttcgta gatcggacgc
      481 agcaggtcga gcatctggat gatgcctttc ggacgcaggt cgaagaagtc gtggacgagc
      541 gcggcgatgc ggtcgtcggg gatcttgccg gtgccttcgg tgtagaccgt gacgttcatc
      601 ggccgcgcca cgccgatcgc gtaggcgacc tggatctggc attgcttggc gaggccggcg
      661 gcgacgatgt tcttcgccac gtagcgcgcg gcgtaggcgg ccgagcggtc gaccttgctc
      721 gggtccttgc ccgagaacgc gccgccgccg tgcgggcagg cgccgccgta ggtgtcgacg
      781 atgatcttgc ggccggtgag gccgcagtcg ccctgcgggc cgccgatgac gaagcggccg
      841 gtcgggttga tcaggtactt ggtgtccttc agccactcct tggggagcac cggcttgatg
      901 atctcctcga tcaccgcttc ggtgaactcg ggcttcatct tcgtgcccag gctcatctcg
      961 ggcgcgtgct ggctcgagag cacgacggtg tcgatcgagt gcggcttgcc gtcgacgtag
     1021 cgcatcgtca cctggctctt cgcgtcgggg cgcaggaacg gcaggcgccc gtcctttctc
     1081 aactgggcct ggcgttcgac gaggcggtgc gcgtaataga tcggcgcggg catcagctcg
     1141 ggcgtctcgt cgcaggcgta gccgaacatc aggccctggt cgccggcgcc ggtgttgagg
     1201 tggtcgtcgc tcgcatggtc gacgccctgg gcgatgtcgt tgctctgctt gtcgtaggcg
     1261 acgagcacag cgcagccctt gtagtcgatg ccgtattcgg tgttgtcgta gccgatgcgc
     1321 ttgagcgtgt cgcgcgcgac ctgcatgtag tcgacgtgcg cgttggtcgt gatctcgccg
     1381 gcaagcacga cgaggccggt gttgcacaaa gtctccgcgg cgacgcgcga acgcgggtcg
     1441 acggcgaaga tcgcgtcgag aatggcgtcc gagatctggt cagccacctt gtcggggtga
     1501 ccctcggaaa cggactcgga agtgaagagg aaatcgttcg acacgtcaat actccagtca
     1561 ggttgcacaa ctcgcgttgc cggcctgaag aaatctggag gagcggcgaa cgctttagca
     1621 ggatttgttg agccttcgcc ctgcaggcag ggcgcatcgc ccgcttcctg catcgccccg
     1681 caagtagttc ataactcggc gatggccaga ttatagatgg gcctcctgcg ctggctttcg
     1741 ggatggccct tgttctggct gcaccggctg ggggacgtgg ccggctggct cgcgtacgcg
     1801 ttctcgccga cctataggcg ccgcttcctc gccaatgcgc accaggccgg gctcggcccg
     1861 gcgcagtacc ggcccgcggt ggcgcaggcc ggccggctcc tgatggaact cccgctgctc
     1921 tggctgcggc cgctcgagga gccgatcctg ccgcgcgtgc gctgggaggg cctggccctc
     1981 atcgtcgacg cgctggccca gggccgcggc gtggtattcc tgacgccgca cctgggctgt
     2041 ttcgaggtca ccgcacaagc ctacgcggaa cggttcggcg ccgagttcgg gccgatcacc
     2101 gtgctctatc gcccggcgcg caaggcctgg ttgcggccgc tggtggcggg gtcccgggtg
     2161 cgaccgggcc tcgtcactgc accggccacg ctggccggcg tgcgccagat gatccgcgcg
     2221 ctgcgccgcg gcgaggcgat cggcctcttg cccgaccagg tgccgcccga gggcctcggc
     2281 gtctgggcgc cctttttcgg caagcccgcg tacaccatga cgctggccgc ccgtctggtc
     2341 cagcagacct gcgccgtgcc gctcgtcgcc tggggcgagc gcctgccgcg cggcgcgggc
     2401 tatgtcgtgc atgtgtcggc gttcgacgag accttgccga aagagccatc ggctcaggca
     2461 gaatccgccg cggccgttaa ccgcgccatg gagcgcctga tcctgcaaag cccgcagcag
     2521 tacctgtggg gctatcaccg ctacaaggaa ccggcccgac gcgcgcccgg ttccgacatc
     2581 tgaccgctgt tgaaggcgac gattccttgg gcgcgcgcat cctgctcgga gttctgtggc
     2641 tgctgcactg gttgccgctc ggcgttcagg ccgccctcgg ccgcgccctc ggcggcgtgc
     2701 tgcatggact cgcgggctcg cgccggcgca tcgcgctgcg caacgtcgag ctctgctttc
     2761 ccgagcagtc cgcggcggcg cgccggaggc tcgtgcgcga gcatttccgc tggctcggcc
     2821 gcagcatcgt cga
//
LOCUS       DASVHM010000249         2019 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1245090, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000249 DASVHM010000000
VERSION     DASVHM010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1245090"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..1192
                     /locus_tag="VF308_04785"
     CDS             44..1192
                     /locus_tag="VF308_04785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016454722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436000.1"
                     /translation="MNRILKTALIAALVGVAGATRADINVGVTVSATGPAASLGIPEK
                     NTIALMPQTIGGQKVNYIVLDDASDTVAAVSNARRLITENKVDVLLGSTTTPNSLAMI
                     DVVSEAQTPMISMAASARIVEPVDAKRRWVFKTPQNDIMMSLAIATHMANAGVKTVGF
                     IGFADAYGEGWYQEFSKIAAVKGLSIVANERYARTDTSVTGQVLKIVAAKPDAVLVAA
                     SGTPAVLPQRALKERGYAGKYYQTHGVANNDFLRVGGKDVEGTFLPSGPVLVAAQLPA
                     DHPVRKTALDYVSRYEAANGKGSVSTFGAHAWDAGMLMQVAATQALKKARPGTQEFRS
                     ALRDALESAREVAGAHGIFNMSPTDHLGLDQRARVMVTIENGAWKYQP"
     gene            1189..>2019
                     /locus_tag="VF308_04790"
     CDS             1189..>2019
                     /locus_tag="VF308_04790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007837444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX7436001.1"
                     /translation="MTPPSTLQSLIADRWIGREPAAALASAIHGGAIHHTHAEAIDFA
                     EALRFARGRGVPALMAMDFQQRAARLKALAAYLNERKEQLYAISHHTGATRNDSWIDI
                     EGGTGTLYAYASMGSAELPSGNVLHEGPVTQLGKKGHFVGTHILVPRGGVAVHINAFN
                     FPIWGLLEKFAPTFLAGMPCIAKPATATSYLTEAIVRLMAESGLLPVGSLQLVIGATG
                     DLLERLEGQDVVTFTGSAETAAKLRGNRNLIAKSIPFNAEADSLNCAILAPDVTPDDE
                     E"
BASE COUNT          363 a          706 c          652 g          298 t
ORIGIN      
        1 tgatttcttg tacctgccct ttccaagata cggagacctc atgatgaatc gaatcctcaa
       61 gaccgccctg atcgccgccc tcgtcggcgt ggcgggcgcc acgcgcgccg acattaatgt
      121 cggcgttacc gtttcggcca ccggcccggc ggcttcgctc ggcattccag agaagaacac
      181 gatcgcgctg atgccgcaga cgatcggcgg ccagaaggtg aactacatcg tcctcgacga
      241 tgcctcggac acggtcgcgg ccgtgagcaa cgcgcgccgt ctgatcaccg agaacaaggt
      301 cgacgtgctg ctcggttcga cgacgacgcc gaactcgctc gcgatgatcg acgtggtctc
      361 ggaagcgcag acgccgatga tctcgatggc cgcctcggcg cgcatcgtcg agccggtcga
      421 cgcgaagcgc cgctgggtct tcaagacgcc gcaaaacgac atcatgatgt cgctcgcgat
      481 cgcgacacac atggccaatg ccggcgtgaa gacggtcggc ttcatcggct tcgcggacgc
      541 ctacggcgaa ggctggtacc aggagttcag caaaatcgcc gccgtcaagg gcctgagcat
      601 cgtcgccaac gagcgctatg cgcgcaccga cacctcggtg accggccagg tcctgaagat
      661 cgtcgccgcc aagcccgatg cggttctcgt cgccgcgtcc ggcacgccgg ctgtgctgcc
      721 gcagcgcgcg ctcaaggagc gtggctacgc cggcaagtac taccagaccc acggcgtcgc
      781 gaacaacgac ttcctgcgcg tcggcggcaa ggacgtcgaa ggcacgttcc tgccgtccgg
      841 gccggtgctg gtcgcggcgc aactgcccgc cgaccacccg gtcaggaaga ccgcgctcga
      901 ctacgtgagc cgctacgagg cggcgaacgg caaaggctcg gtctcgacct tcggcgccca
      961 cgcgtgggat gccggcatgc tgatgcaggt cgccgcgacc caggcgctga agaaggctcg
     1021 ccccggcacg caggagttcc gctcggccct gcgcgacgcg ctcgaatcgg cgcgcgaagt
     1081 ggccggcgcg cacggtatct tcaacatgtc gccgaccgat cacctcggcc tcgaccagcg
     1141 cgcccgcgtg atggtcacga tcgagaacgg cgcctggaaa taccagccat gacgccgcct
     1201 tcgaccctgc aaagcctgat cgccgaccgc tggatcgggc gcgagccggc ggcggcgctg
     1261 gcgagcgcga tccacggcgg cgcgatccat cacacccatg ccgaggccat cgacttcgcc
     1321 gaggcgctgc ggttcgcccg cgggcgcggt gtgccggccc taatggccat ggacttccag
     1381 cagcgcgcgg cgcgcctgaa ggccctcgcg gcgtacctga acgaacgcaa ggaacagctc
     1441 tacgcgatct cgcaccacac cggcgcaacg cgcaacgaca gctggatcga catcgaaggc
     1501 ggcaccggga cgctctacgc gtatgcgtcg atgggcagcg ccgagctgcc gtcgggcaac
     1561 gtgctgcacg aagggccagt cacacaactg ggcaagaagg gccacttcgt cggcacccac
     1621 atcctcgtgc cgcgcggcgg cgtcgcggtg cacatcaatg cgttcaactt cccgatctgg
     1681 ggactgctcg agaaattcgc gccgaccttt ctcgccggca tgccgtgcat cgccaagccg
     1741 gcgaccgcga cgagctacct gaccgaagcg attgtgcggc tgatggccga atccggcttg
     1801 ttgccggtgg gcagcctgca gctcgtgatc ggcgcgaccg gcgacctgct cgagcggctc
     1861 gagggccagg acgtcgtcac cttcaccggc tctgcggaaa cggctgccaa gctgcgcggc
     1921 aaccgcaacc tgatcgcgaa atcgattccg ttcaatgccg aggccgattc gctgaactgc
     1981 gcgatcctcg cgcccgacgt gacgcccgac gacgaggag
//
LOCUS       DASVHM010000250         2868 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_234872, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000250 DASVHM010000000
VERSION     DASVHM010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234872"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VF308_04795"
     CDS             <1..217
                     /locus_tag="VF308_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004543045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7436002.1"
                     /translation="AKAEIAMIKVVAPNMACDVIDWAIQVHGGGGVSDDFPLAGFYAS
                     SRTLRFADGPDEVHRNAIAKIELGKYA"
     gene            complement(246..995)
                     /locus_tag="VF308_04800"
     CDS             complement(246..995)
                     /locus_tag="VF308_04800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436003.1"
                     /translation="MLGSFKGFFANQGLGLDFSEVSSWAKRRGHAFKRARDVEGFAID
                     GTLDGKAWRLEWGPAQRTYIVGNELRARADLGLPADLQMLLLSRPLRDALESQTYAQF
                     TQTNQTEMGDSSPEEMRWLVMFAKIDLRALKGVRARFGGVSSLPGDGLAWVEGRLANQ
                     LVKASRRMLLDEPPFVLMTLRGRAYLRMQLATADADDIAGALDLFETAASEALRVAAQ
                     RPEPGPDWESSASTAWQSLHPGRRGDPKAGG"
     gene            1044..1736
                     /locus_tag="VF308_04805"
     CDS             1044..1736
                     /locus_tag="VF308_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020203668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione binding-like protein"
                     /protein_id="HEX7436004.1"
                     /translation="MIEVYSWATPNGHKVHIMLEECGLAYRAIPVDIGAGDQFEAEFL
                     AISPNNKIPAIVDPDGPDGTPISLFESGAILVYLAGKTGRFLPADTRGKYHALEWLMF
                     QMGSIGPMLGQAHHFRVYAPQKIEYAIERYTNEAGRLYGVMDRRLAKSRYIAGPEYGI
                     ADIAIFPWLRSWKNQGIDWNDFPHLKGWFDEIAARPAVKRGVEVLAGLRRPITGDKER
                     EILFGARQYQRR"
     gene            1774..2514
                     /locus_tag="VF308_04810"
     CDS             1774..2514
                     /locus_tag="VF308_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019139843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006974 - DNA damage response [Evidence
                     IEA];
                     GO_process: GO:0018142 - protein-DNA covalent
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase family
                     protein"
                     /protein_id="HEX7436005.1"
                     /translation="MCSNYRPVTRIDRLLTFFGVERARDDPPQDIFPLGLAPFIRLRR
                     GGPLQDADGRIVEDGIFGLLPHFASEVAYGRKTYNARSETVAVLASFRQAWHAGRRCI
                     VPAEYFYEPNWESGKAVRWRIGQAGDVPMGIAGIHAAWRHPDGREMSTFAMLTVNADE
                     HPLMRRFHRPGEEKRMVVILHPDDYAEWLSCAVADAPKFFRQWQGPLDAAPEPPPPRA
                     PGAASARTTRPQPPPATPEEGPSGRLFE"
     gene            2649..>2868
                     /locus_tag="VF308_04815"
     CDS             2649..>2868
                     /locus_tag="VF308_04815"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012250315.1"
                     /note="Activates fatty acids by binding to coenzyme A;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase"
                     /protein_id="HEX7436006.1"
                     /translation="MERTWLDHYPPGIPAEVDLHEFASLKDVLQRSCQRFGELPAYSN
                     MGASMTYAELDRSSRDFAAYLQKSLHLRK"
BASE COUNT          478 a          997 c          941 g          452 t
ORIGIN      
        1 cgccaaggcc gaaatcgcca tgatcaaggt cgtggcaccg aacatggcct gcgacgtgat
       61 cgactgggcg atccaggtgc acggcggcgg cggcgtctcg gacgacttcc cgctggccgg
      121 cttctatgcc agctcccgga cgctgcgctt cgccgacggc cccgacgagg tccatcgcaa
      181 cgcgatcgcg aagatcgagc tcggcaagta cgcctgagcg gcggctaggg cctgagcggc
      241 cctagctagc cgcccgcttt cggatcgccg cgccgccccg ggtgcaggct ctgccaggcg
      301 gtcgaggcgc tcgactccca gtcggggccc ggctcgggcc gctgcgccgc gacccgcagc
      361 gcctcgctcg cggccgtctc gaacaggtcg agggccccgg cgatgtcgtc ggcatcggcc
      421 gtcgccagtt gcatgcgcag gtaggcgcgc ccgcgcagag tcatcagcac gaacggcggc
      481 tcgtcgagaa gcatgcgccg gctcgccttg acgagctgat tggcgagccg accttcgacc
      541 caggcaaggc cgtcgcccgg caggctcgaa accccgccga agcgcgcgcg cacgcccttc
      601 agggcgcgca gatcgatctt cgcgaacatc accagccagc gcatttcctc gggcgaggag
      661 tctcccatct cggtctggtt ggtttgcgtg aactgcgcat aggtctggct ttcgagcgcg
      721 tctcggagcg ggcgcgaaag cagcagcatc tgcagatcgg ccggcaggcc gaggtccgcg
      781 cgggcgcgca gttcgttgcc gacgatgtag gtgcgctgcg ccggacccca ttcgagccgc
      841 caggccttgc cgtcgagggt gccgtcgatc gcgaagcctt cgacatcgcg ggcgcgcttg
      901 aaggcgtggc cgcggcgctt ggcccagctc gagacctcgc tgaaatcgag cccgagaccc
      961 tggttcgcga agaagccctt gaatgagccc agcatggcag cccccaatcc actagagtgg
     1021 tggtcgacgg gaggtcggca gagatgatcg aagtgtattc gtgggccacg cccaatggcc
     1081 acaaggttca catcatgctc gaggaatgcg gcctcgcata ccgggcgatc cccgtggaca
     1141 tcggcgcggg cgaccagttc gaggccgagt tcctcgccat cagcccaaac aacaagatac
     1201 ccgccatcgt cgaccccgac ggccccgatg gcacgccgat ctcgctcttc gaatccggcg
     1261 cgatcctcgt gtacctggcc ggcaagaccg gccgcttcct gcccgccgac acgcgcggca
     1321 aataccatgc gctcgaatgg ctgatgttcc agatgggcag catcggtccg atgctcggcc
     1381 aggcgcatca cttccgcgtg tatgcgccgc agaagatcga gtacgcgatc gagcgctata
     1441 ccaacgaggc cgggcgcctc tatggcgtga tggatcggcg cctcgccaag agccgctaca
     1501 tcgcgggccc cgaatacggc atcgccgaca tcgccatctt tccgtggctg cgctcgtgga
     1561 agaaccaggg catcgactgg aacgatttcc cgcacctgaa gggatggttc gacgagatcg
     1621 ccgcgcgccc cgccgtgaag cgcggcgtcg aggtgctggc cggcttgcgc aggccgatca
     1681 ccggcgacaa ggaacgcgag atcctgttcg gcgcgcgcca gtaccagcgg cgctgatccc
     1741 gcatcgacgc gctgcgccgc gatcgtcctc gccatgtgca gcaactaccg cccggtcacg
     1801 cgcatcgatc gcctgctcac cttcttcggc gtcgagcgcg cgcgcgatga cccgccgcag
     1861 gacatctttc cgctcggtct cgcgcctttc atccggttgc gccgcggcgg gccattgcag
     1921 gacgccgacg gtcgcatcgt cgaggacggc atcttcggcc ttctgcccca tttcgcgagc
     1981 gaagtggcct atggccgcaa gacctacaac gcgcgcagcg aaacggtcgc ggtgctggcg
     2041 agcttccggc aggcctggca cgccggccgg cgctgcatcg ttccggccga gtacttctac
     2101 gagccgaact gggaaagcgg caaggcggtg cgctggcgca tcggccaggc cggcgacgtg
     2161 ccgatgggca tcgccggcat ccatgcggca tggcgccacc ccgatggccg cgagatgtcg
     2221 accttcgcga tgctgaccgt caatgccgac gagcatccac tgatgcggcg ctttcatcgc
     2281 ccgggcgagg aaaagcggat ggtcgtgatc ctgcacccgg acgactatgc cgagtggctt
     2341 tcgtgcgccg tcgccgacgc gccgaagttc ttccggcaat ggcaaggtcc gctcgacgcg
     2401 gcgcccgagc cgccgccgcc gcgtgcgccg ggtgcggcaa gcgcgcgcac gacccgccct
     2461 cagccgcccc ctgccacgcc cgaagaaggg ccctccggca ggctattcga atgactcgtt
     2521 gagcttcggg cttcgggctg cggctcgcgt cgctcttgac gcagatcagc acattcttgc
     2581 gccaagtgtg gtccaagtac gaggaacact tcgtcaggat tcgccgacag acgcaaagcg
     2641 agatcgagat ggaacgaact tggctagatc attacccgcc gggcattccg gccgaggtcg
     2701 acctgcatga gttcgcctcg ctcaaggacg tgctgcagcg cagctgccag cgcttcggcg
     2761 aattgcccgc ctacagcaac atgggggcgt cgatgaccta tgcggaactc gaccggtcga
     2821 gccgcgactt cgccgcctat ctgcagaagt cgctgcacct gcgcaagg
//
LOCUS       DASVHM010000251         1719 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_305692, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000251 DASVHM010000000
VERSION     DASVHM010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305692"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(56..1630)
                     /locus_tag="VF308_04820"
     CDS             complement(56..1630)
                     /locus_tag="VF308_04820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436007.1"
                     /translation="MKRLCSLALAGALAVAAADAQTLRWASQGDPQTMDPHSQNESMT
                     NMMNGQVYERLTSRDRQLKIVPGLATEWQQVGPLVWRVKLRQGVKFHDGSPLTADDVV
                     YSVQRGQMPTSQINNYAAGVGTARKIDESTIEFTLVAVNPIFLEHLDTLWIMSKAWSE
                     KNKVTRPLDFKNKEESYAARNANGTGPYMLGSRAPGIKTTYRRNPSYWGKVEGNVQEI
                     VFTPIANDATRLAALVSGEIDFVLDPAPRDIARLRNTPGVKVIDGPENRVVFIGMDQG
                     RDELLYSSVKGRNPFKDVRVRRALYQAIDIETLKTKLMNGQSFPTGAVMPSPLGTYND
                     AELEQRYPFDLAAAKKGLADAGYADGFEVQLHCPNNRYVNDEQICIALASMWAQVKVR
                     VKVSGEPRVTYFPRLEKYDFSMYMLGWGGSVTDAETTLTPVMRNNLGEKGIGFYNYGH
                     SKNDKLDALAAQSSIEADPKKREELVKAALREFKEQFTALPLHRQVIPWAARANVDVV
                     HRADNWFEVSWVTIGK"
BASE COUNT          233 a          565 c          594 g          327 t
ORIGIN      
        1 ggcggcgctc ggcgagctcg gctgacggtc gacgtcgcgc ccggcgcgcg cgccgtcact
       61 tgccgatcgt cacccaggac acctcgaacc agttgtcggc gcggtgcacg acgtcgacgt
      121 tcgcgcgcgc cgcccaggga atcacctggc ggtgcagcgg cagcgccgtg aactgctcct
      181 tgaactcgcg cagcgccgcc ttgacgagct cctcgcgctt cttcggatcg gcctcgatgc
      241 tcgactgcgc ggcgagcgca tcgagcttgt cgttcttcga gtggccgtag ttgtagaagc
      301 cgattccctt ctcgccgagg ttgttgcgca tcaccggcgt cagcgtcgtc tcggcgtcgg
      361 tgaccgagcc gccccagccg agcatgtaca tgctgaagtc gtacttctcg aggcgcggaa
      421 agtaggtcac gcgcggctcg ccggagacct tgacccgaac cttgacctgc gcccacatgc
      481 tcgccagggc gatgcagatc tgctcgtcgt tgacgtagcg gttgttcggg caatggagct
      541 gaacctcgaa gccgtcggcg tagccggcgt cggcaaggcc cttcttcgcg gcggcgaggt
      601 cgaacggata gcgctgctcg agctccgcgt cgttgtaggt gccgagcgga gacggcatca
      661 cggcgccggt cggaaagctc tgcccgttca tgagcttggt cttcagcgtc tcgatgtcga
      721 ttgcctggta gagcgcgcgg cggacgcgga cgtccttgaa cgggttcctg cccttgacgc
      781 tgctgtagag cagctcgtcc cggccctggt ccatgccgat gaagacgacc cggttctccg
      841 gcccgtcgat caccttcacg cccggggtgt tgcgcagccg ggcgatgtcg cgcggcgccg
      901 ggtcgaggac gaaatcgatc tcgcccgaga ccagcgcggc caggcgcgtc gcgtcgttgg
      961 cgatcggcgt gaagacgatc tcctggacgt tgccttcgac cttgccccag tagctcgggt
     1021 tgcgcctgta ggtcgtcttg atgccgggcg cgcggctgcc gagcatgtag gggccggtgc
     1081 cgttggcgtt gcgcgcggcg tagctctctt ccttgttctt gaagtcgagc ggccgggtga
     1141 ccttgttctt ctcgctccag gccttgctca tgatccagag cgtgtcgagg tgctcgagga
     1201 agatcgggtt caccgccacc agcgtgaatt cgatcgtcga ctcgtcgatc ttccgcgccg
     1261 tgccgacccc cgccgcgtag ttgttgatct gcgaggtcgg catctggccg cgctggaccg
     1321 aatagacgac gtcgtcggcc gtgagcggcg agccgtcgtg gaacttcacg ccctggcgca
     1381 gcttgacgcg ccagacgagc gggccgacct gctgccactc ggtggcgagg ccaggaacga
     1441 tcttcagctg ccggtcgcgg ctcgtcagcc gctcgtagac ctggccgttc atcatgttgg
     1501 tcatggactc gttctgcgag tgcgggtcca tggtctgcgg gtcgccctgg ctggcccagc
     1561 gcagcgtctg cgcgtcggcg gcggcgacgg ccagcgcgcc cgcgagcgcg agcgagcaga
     1621 gccgcttcat ttcctagcgg aagcgcggct gctggacggt cctgagctcg cccggcagcg
     1681 agccgaggga cgccgcaatc gccttgatct cgggatgcg
//
LOCUS       DASVHM010000252         3836 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1171995, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000252 DASVHM010000000
VERSION     DASVHM010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3836
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1171995"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..361
                     /locus_tag="VF308_04825"
     CDS             <1..361
                     /locus_tag="VF308_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012202531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FHIPEP family type III secretion protein"
                     /protein_id="HEX7436008.1"
                     /translation="IRVHLAPSIVQQIYGPTQELDVIALEPELERMVTQALNSPHGAA
                     LDPGVADTLSRSAADSAKRQEDLGHPACLLVPDLIRAPMARLLKRAAPRLRVLSHSEI
                     PETHSIRIGSIIGGAAA"
     gene            358..1890
                     /gene="flhF"
                     /locus_tag="VF308_04830"
     CDS             358..1890
                     /gene="flhF"
                     /locus_tag="VF308_04830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEX7436009.1"
                     /translation="MNVKRFTARTSRDALALVRQAFGDDAVVLSTKPSAHGVEVLAMA
                     PESMRQVERISAAQARPAASSKLAARGERVEPALEEASVLEDAEQLTMSTLSFQDYVR
                     DRMLKRRRAALNAQSGDDATAEPYADETADPVAAPAPRAAEVPGDRAGVLEQRMAERG
                     APVARAASPLREAPVALDPLAGEIHVPGLADAGSARRNQEDMMNELRSMKGLIEERFG
                     ALAFMEKLQRQPGQARLTQKLLDCGFSPALIRKLADGLGADIADESAWAAGILERNLM
                     TAQADPALEDSGGVYALVGATGVGKTTTTAKIAAAFATRYGAANLGLVTLDAYRVGAH
                     EQLRAYGRILGVPVHTAHDRASLEDLLDLLSAKKMVLIDTAGMAQRDARTRELLEMLS
                     HRSVQKLLVINAASQGETIEDVIVAYRAASCAGIVLSKMDEAVKLGPALDALIRHKLK
                     VIGVANGQRVPEDWHRLSAHALVQRALRGGGSSAYRLDANDVNLIFTAPRAGQSRPAV
                     SA"
     gene            1914..2735
                     /locus_tag="VF308_04835"
     CDS             1914..2735
                     /locus_tag="VF308_04835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein"
                     /protein_id="HEX7436010.1"
                     /translation="MSRHLPSDQAQGLRRLFAHSLVRFVPVVSNPYVTFGGLMLERLC
                     AGFAERGVHTLVVDASERAAGPAEMALLDLASCIEPLSARVSYLAARGLPLKFVDASG
                     STEGFLEAVSEASPASQVVLVHATPSDLCRLFARRARADVGRPVCPLLLADDRPDSVT
                     HAYAAMKLLALRAGLKVHDLLLGAAAHSPRADRIAVQLAVCADEFLGAVLRDWVRIDP
                     ATDAADPSTPALRRWVRERLQRGDGEAAAADAETVELPAAHSTGTRFAASNWAFH"
     gene            2753..3466
                     /locus_tag="VF308_04840"
     CDS             2753..3466
                     /locus_tag="VF308_04840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HEX7436011.1"
                     /translation="MYTAKGQLDLNSTLKQYSSLVRRLAHQMIAKLPANVEIDDLIQV
                     GMIGLTDALSRFDAAQGVQFETFATQRIRGAMLDELRGNDYLSRGTRKQQRSIESAVH
                     KLEQKLGRAPVESEIAKEMGLGLAEYQELLGKVRGTQLVYLEDMAGAEGDNDFLDRHV
                     VDEGSNPLAQLQDQRMREALVEAIKVLPEREQYVMSMYYEHDMNLKEIAAVLKVTESR
                     VCQLHSQSIARLRVKLREY"
BASE COUNT          589 a         1357 c         1298 g          592 t
ORIGIN      
        1 catccgcgtc cacctcgccc ccagcatcgt ccagcagatc tacggcccga cccaggagct
       61 cgacgtcatc gcgctcgagc ccgaactcga gcgcatggtc acgcaggccc tcaattcgcc
      121 gcatggcgcc gcgctcgacc cgggcgtggc cgacacgctg tcgcgcagcg ccgccgactc
      181 ggccaagcgc caggaagacc tcgggcatcc ggcctgcctg ttggtgcccg acctgatccg
      241 cgcgccgatg gcgcggctcc tcaagcgcgc cgcgccgcgc ctgcgcgtgc tcagccacag
      301 cgagattcca gagacccatt cgatccggat cggttcgatc atcggaggag cagcggcatg
      361 aacgtcaaac gctttacggc gcgcacctcg cgcgatgcac tggccctggt gcgccaagcc
      421 ttcggcgacg acgccgtcgt gctctcgacc aagccttcgg cccacggcgt cgaggtcctt
      481 gcgatggcgc cggaaagcat gcgccaggtc gaacgcatca gcgccgcgca ggctcgcccc
      541 gccgcgtcgt cgaagctcgc cgcgcgcggc gagcgcgtcg aaccggctct cgaggaggcg
      601 tcggtcctgg aagatgccga acagctgacg atgagcacgc tctcgttcca ggattacgtg
      661 cgcgaccgca tgctcaagcg tcgccgggcg gcgttgaacg cgcaatcggg cgacgacgcg
      721 acggccgagc cgtatgccga cgaaacggcc gacccggtcg cggcacctgc gccgcgtgcc
      781 gcggaagtcc ccggcgaccg ggccggcgtg ctcgaacagc gcatggccga gcgtggtgcc
      841 ccggtcgccc gcgccgccag cccgttgcgc gaagcaccgg tcgcgctcga cccgctggcc
      901 ggcgagatcc acgttccggg ccttgccgac gcgggcagcg cgcggcgcaa ccaggaagac
      961 atgatgaacg agctgcgttc catgaagggg ctgatcgagg agcgcttcgg cgccctggcc
     1021 ttcatggaaa agctgcagcg ccagcctggc caggcccggc tcacccagaa gctcctcgac
     1081 tgcggttttt cgccggcgct gatcaggaag ctcgccgacg gcctcggcgc cgacatcgcg
     1141 gacgagtccg cgtgggctgc cggcatcctc gagcgcaacc tgatgacggc gcaggccgat
     1201 ccggcactcg aagacagcgg cggtgtctac gccctcgtcg gtgcgacagg cgtcggcaag
     1261 accacgacga cggcgaagat cgccgccgcc ttcgcgacca ggtacggcgc ggcgaacctc
     1321 ggcctggtca cactcgacgc gtatcgcgtc ggcgcgcacg agcagctgcg cgcctatggc
     1381 cgcatcctcg gcgtgccggt gcacaccgcg cacgatcgcg cctcgctcga agacctgctc
     1441 gatctgctgt cggccaagaa gatggtgctg atcgacaccg cggggatggc gcagcgcgat
     1501 gcgcgcacgc gcgagttgct cgagatgctg tcgcatcgct cggtgcaaaa gctcctcgtc
     1561 atcaacgccg cgtcgcaggg cgaaaccatc gaggacgtga tcgtcgcgta tcgcgccgcg
     1621 agctgcgccg ggatcgtgct gtcgaagatg gacgaagcgg tcaagctcgg accggcgctc
     1681 gatgcgctga tccggcacaa gctcaaggtc atcggcgtcg ccaacggcca gcgcgtgccc
     1741 gaagactggc accgcctctc cgcccacgcg ttggtccagc gggcgctgcg cggcggcggc
     1801 agcagcgcct accggctcga cgcgaacgac gtcaacctga tcttcaccgc cccgcgcgcg
     1861 gggcagtcgc ggcccgccgt gagcgcctga accttccact gccggctcct tccatgtcgc
     1921 gtcaccttcc gtccgatcag gcccagggcc tgcgccgcct gttcgcgcac tcgctggtgc
     1981 gtttcgtgcc ggtcgtctcg aatccgtacg tcacgttcgg cggcctgatg ctcgagcgcc
     2041 tgtgcgccgg tttcgcggaa cgcggtgtcc acacgttggt cgtcgacgcg tcggaacgcg
     2101 ccgccggccc cgccgaaatg gcgctgctcg atctggcctc ttgcatcgag ccgctttcgg
     2161 cccgggtctc gtacctcgcc gcgcgcgggc tgccgttgaa gttcgtcgat gcgagcggct
     2221 cgaccgaggg ttttctggag gccgtgtccg aagcgtcgcc ggcgagccag gtggtgctgg
     2281 tccatgcgac gccgtccgat ctttgccgcc tcttcgcgcg ccgggcgcgc gcggacgtcg
     2341 ggcggccggt ctgcccgctg ctgctcgccg acgaccggcc ggacagcgtg acccatgcct
     2401 atgcggcgat gaagctgctg gccctgcgtg ccggtctcaa ggtgcacgac ctgttgctcg
     2461 gcgcggccgc gcactcgccg cgcgccgatc ggatcgcggt gcaactcgcg gtctgtgccg
     2521 atgaattcct gggcgcggta ttgcgcgact gggttcgcat cgatccggcg accgatgccg
     2581 ccgacccttc gacgccggca ctgcgccgct gggtccgcga acgtctgcag cgcggcgatg
     2641 gcgaggcggc cgcagccgat gccgagacgg tcgagctgcc cgcagcgcat tcgaccggca
     2701 cccgcttcgc cgcgtcgaac tgggcttttc attgaatttc cggagcgctt cgatgtacac
     2761 cgccaaaggc cagctcgacc tcaactcgac gctgaagcaa tacagctcgc tggtgcggcg
     2821 cctggctcac cagatgatcg ccaagctgcc ggccaatgtc gagatcgacg acctgatcca
     2881 ggtcggcatg atcggcctga ccgatgccct ttcgcgcttc gacgcggctc agggcgtgca
     2941 gttcgagacc tttgcgaccc agcgcatccg cggtgcgatg ctcgacgagc tgcgcggcaa
     3001 tgactatctg tcgcggggca cgcgcaagca gcagcgttcg atcgaatcgg cggtgcacaa
     3061 actcgagcaa aagctcggcc gcgccccggt cgaaagcgag atcgcgaagg aaatgggact
     3121 cggactggcc gaataccagg agctcctcgg caaggtgcgc ggcacgcagc tggtgtacct
     3181 cgaggacatg gccggtgccg aaggcgacaa cgattttctc gaccgccacg tcgtcgacga
     3241 gggcagcaac ccgctcgcgc aattgcagga ccagcgcatg cgcgaggcgc tggtcgaggc
     3301 gatcaaggtc ctacccgagc gcgagcagta cgtgatgagc atgtactacg agcacgacat
     3361 gaacctgaag gaaatcgccg cggtgctgaa ggtcaccgag tcgcgtgtct gccagttgca
     3421 cagccagtcg atcgcgcgcc tgcgcgtgaa gctgcgcgag tactaggcgt ggacacaagg
     3481 gcgcgcctgc gcgcggcctt gtgcctcgcg aaggactgcg cgcttgcaag cgcacaggca
     3541 tgaggctgga ctgaaagcgt gcctgcgcac gggctcgcgc ctgccgaagg ccattgcgct
     3601 tgcaagcgca atggcatgag cgtgggcatg aaaccgcgcc tgcgcgcgct gtgttcgcgt
     3661 atccgatgtc gacgcccccc ctgcggctga tctggccgct gcccgcgctg ctggcgtggg
     3721 ccgcgagctg ggccgcgttc gccgcgttgt gcctcctcgg ggtttcgttc gtgccggcct
     3781 tcgcgctggc ggccatgctc ggcgccgccc ttgcgctgca ggccgcaaca ccgtgg
//
LOCUS       DASVHM010000253         2627 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1318249, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000253 DASVHM010000000
VERSION     DASVHM010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2627
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1318249"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..938
                     /locus_tag="VF308_04845"
     CDS             <1..938
                     /locus_tag="VF308_04845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX7436012.1"
                     /translation="GASVGYLGEAANSVGAQLVGAMPGPGGLSAGQMLGAEGEATLKA
                     CLLLNIEPTLDAANAVAAVAACNAAEMVVALTSFRSAGHDIADVMLPIAPFTETSGTY
                     VSAEGRVQGAHGVVKPLGDTRPAWKVLRVLGNLLGLEGFDFQSSEDVRAEALGDLASI
                     PARLDNRSATGVAERSRADAAARGAGGFERIADIPIYATDGVVRRASSLQLTADARPP
                     VVGVPRAVSVRLGLAPGDSVRVSQGGAPVVLAASIDATLADNVLRVPAGHPDTAALGP
                     MFGSITVEKVGAGAEPAAAARGTFTTSAPLGSGPV"
     gene            948..2045
                     /gene="nuoH"
                     /locus_tag="VF308_04850"
     CDS             948..2045
                     /gene="nuoH"
                     /locus_tag="VF308_04850"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013123807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEX7436013.1"
                     /translation="MFASFNAAGVSWLGSAWPVAWNVIKILALVIPLMLCVAYLTLWE
                     RKAIGWSQIRPGPNRVGPLGLLQPIADAVKLLFKEIIVPAAANRGLFFLGPVMTIMPA
                     LAAWAVVPFGPDAALSNINAGLLFLMAITSTEVYGVIIAGWASNSKYAFLGALRASAQ
                     MVSYEIAMGFALVVVLMVSASLNLTDIVLGQGKGIFADRGLTFLSWNWLPLLPIFVVY
                     VIAGIAETNRAPFDVVEGESEIVAGHMVEYSGMAFAMFFLAEYANIILVSTLASVMFL
                     GGWMAPVSLQLFGIGTPGWLADSMWFWNWFWLFAKTFVIATLFLWTRATFPRFRYDQI
                     MRLGWKIFIPVTLVWLVVVGLWIESPWNIWK"
     gene            2054..2551
                     /gene="nuoI"
                     /locus_tag="VF308_04855"
     CDS             2054..2551
                     /gene="nuoI"
                     /locus_tag="VF308_04855"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEX7436014.1"
                     /translation="MAHATPIKDFISSFMLTELFKGMRLTGRHFLSKKITIQYPEEKT
                     PLSPRFRGLHALRRYENGEERCIACKLCEAVCPALAITIESDVRDDGSRRTTRYDIDL
                     TKCIFCGFCEESCPVDSIVETHILEYHGEKRGDLYFTKDMLLAVGDRYEKEITAAREA
                     DAKYR"
BASE COUNT          388 a          897 c          872 g          470 t
ORIGIN      
        1 ccggcgccag tgtcggctat ctcggcgagg ccgctaacag cgtcggcgcg caactggtcg
       61 gtgccatgcc ggggcccggg ggcctcagcg ccggacagat gctcggcgcc gagggcgagg
      121 cgacgctgaa ggcgtgcctc ctgctcaaca ttgaaccgac cctcgacgcg gccaatgcgg
      181 tcgccgccgt ggccgcctgc aacgcggccg agatggtggt cgcgctgaca tcgttcagga
      241 gcgcagggca cgacatcgcc gacgtcatgc tgccgatcgc gccgttcacc gagacctcgg
      301 gcacgtatgt gagcgccgaa gggcgcgtgc agggcgccca tggggtcgtc aagccgctcg
      361 gcgacacgcg cccggcttgg aaggtgctgc gcgtgctcgg caatctgctc ggcctcgaag
      421 gattcgattt ccaatcgtcc gaggacgtgc gggccgaggc gttgggcgac ctcgcatcga
      481 taccggcacg actggacaat cgcagcgcca ccggcgtcgc agagcggtct cgtgctgacg
      541 ccgctgcgag aggtgcgggc ggcttcgaac gcattgccga cataccgatc tacgcgaccg
      601 atggggtcgt tcgccgggct tcgtcgctgc aactgaccgc cgatgcgcgg ccgcccgtgg
      661 tcggtgtgcc gcgcgcggtg tcggtacgcc tgggtctcgc ccccggcgac tcggtgcgtg
      721 tctcgcaggg cggggcccct gtcgtgctgg ccgcgtcgat cgatgcgacc ctggccgaca
      781 acgtgctgcg cgtgccggcc gggcatcccg acactgcggc gctcgggccg atgttcgggt
      841 cgatcacagt cgaaaaggtc ggtgccggag ccgaacccgc cgcggctgcg cgcggcacct
      901 tcaccacgtc cgcgccgctc ggcagcgggc cggtctgaga gcgcccgatg ttcgcctctt
      961 tcaacgcggc cggggtctcg tggctgggca gcgcctggcc cgtcgcctgg aacgttatca
     1021 agatcctcgc gctcgtgatc ccgctgatgc tgtgcgtcgc ctacctgacg ctgtgggagc
     1081 gcaaggcgat cggctggagc cagattcgcc cgggcccgaa ccgggtcggg ccgctcggcc
     1141 tgctgcagcc catcgccgat gcggtcaagc tcctgttcaa ggaaatcatc gtgccggcgg
     1201 ccgccaaccg cggcctcttc ttcctcgggc cggtgatgac gatcatgccg gcgctggcgg
     1261 cctgggcggt ggtgccgttc ggccccgacg cggcgctttc caacatcaac gccggcttgc
     1321 tcttcctgat ggcgatcacc tcgacggagg tgtacggcgt gatcatcgcc ggctgggcct
     1381 ccaattcgaa gtacgcgttc ctcggcgcac tgcgcgcttc ggcgcagatg gtcagctacg
     1441 agatcgcgat gggcttcgcg ctcgtcgtcg tcctgatggt gtcggcgagc ctgaacctca
     1501 ccgacatcgt tctcggccag ggcaagggca tcttcgccga ccgcgggctc accttcctga
     1561 gctggaactg gctgccgctg ctgccgatct tcgtggtcta cgtgatcgcc ggcatcgccg
     1621 agacgaaccg cgcgcctttc gatgtcgtcg agggcgaatc cgagatcgtc gcgggccaca
     1681 tggtcgaata ctccggcatg gccttcgcga tgttcttcct cgccgagtac gccaacatca
     1741 tcctcgtctc cacgctcgcc tcggtgatgt tcctcggcgg ctggatggcg ccggtgtcgt
     1801 tgcagctctt cggcattggg acgcccggct ggctcgctga ttcgatgtgg ttctggaact
     1861 ggttctggct gttcgccaag accttcgtga tcgccaccct gttcctctgg acccgcgcga
     1921 cctttccgcg cttccgctac gaccagatca tgcgcctggg ctggaagatc ttcattccgg
     1981 tcacgctggt gtggctggtg gtcgtcgggc tgtggatcga gtccccgtgg aacatctgga
     2041 aataggccct cccatggctc acgcaacgcc catcaaggat ttcatctcga gcttcatgct
     2101 caccgagctc ttcaagggca tgcgcctcac cgggcgccat ttcctgtcga agaagatcac
     2161 gatccagtac ccggaagaga agacgccgct cagcccgcgc tttcgcggcc tgcacgcgct
     2221 gcgccgctac gagaacggcg aggagcgctg catcgcctgc aagctgtgcg aggcggtgtg
     2281 tccggcgctc gcgatcacga tcgagagcga cgtgcgcgac gacggttcgc gccgcacgac
     2341 ccgctacgac atcgacctga cgaagtgcat cttctgcggc ttctgcgagg agagctgccc
     2401 ggtcgattcg atcgtcgaga cccacatcct cgaataccac ggcgaaaagc gcggcgacct
     2461 gtacttcacg aaggacatgc tgctcgccgt cggcgaccgc tacgaaaagg aaatcaccgc
     2521 ggcgagggag gcggacgcca agtaccgttg acgccgcgtt cgccgccagc cggcggcagg
     2581 cgcgcgccgc aaggctccca tcatggacac ccacaccgcg ctcttct
//
LOCUS       DASVHM010000254         1946 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1318290, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000254 DASVHM010000000
VERSION     DASVHM010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1318290"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1412)
                     /locus_tag="VF308_04860"
     CDS             complement(<1..1412)
                     /locus_tag="VF308_04860"
                     /inference="COORDINATES: protein motif:HMM:NF014615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HEX7436015.1"
                     /translation="MSNRDFMATARERVIIFDGGMGATLETFDLSLEDDYKLPGRAHE
                     ALVLNRPDVIEGVHRSMAEAGAIVVETDTFQASRLKLGEWGLAEHTREINVKAAQIAR
                     RAVGEDLFVAGSIGPTGMLPASMEPGLCETSFAELREVFAEQAAGLIEGGVDLIIIET
                     AQDILEVKAAVFGARDAFKAAGRAVPIQCSVSLLPNGGKMLLGTDIDSVLTTLEALKV
                     DVIGLNCSTGPEDMRDAIRFLGEFCPVPVHCIPNAGLPQQGPDGETIFPELPEPLAEA
                     LGGFVERYGVSIVGGCCGTTPDHIRAIADRCATLPVRARPAPRPPRLSSMIAATALVQ
                     EPRPTLVGERVNSQGSRAAKEMLLADDYDGLVRVAENQVEGGAHVLDLCVALTERPDD
                     EAAQMREVAKRVSLTQPAPLQIDSTEPDVIKLTLEQTPGRAIVNSINLEAGRDKLDTV
                     VPLAIEHGAAVIALTIDEVG"
     gene            1559..>1946
                     /locus_tag="VF308_04865"
     CDS             1559..>1946
                     /locus_tag="VF308_04865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436016.1"
                     /translation="MRRPVIQRIRKIIGAAAVFAAALVITFVLAGCGGNSIDDTLVKE
                     TGAHGVQLEKVYNLYNQDVLKKVSSRDLKGINAALKAGDLKQATPGEVRRAQDEINSR
                     IKRLDKFVAALKAANRKLKSTPEPNFS"
BASE COUNT          340 a          650 c          617 g          339 t
ORIGIN      
        1 attccgacct cgtcgatcgt cagcgcgatc acggccgcgc cgtgctcgat cgccagcggt
       61 acgaccgtgt cgagcttgtc gcggccggct tcgaggttga tcgagttgac gatcgcccgg
      121 ccgggtgtct gctcgagcgt gagcttgatc acgtcgggct cggtcgagtc gatctgtagt
      181 ggcgccggtt gagtgagcga aacccgtttg gcgacctcgc gcatctgcgc ggcttcgtcg
      241 tcagggcgtt cggtcagcgc cacacagagg tccaacacgt gggcgccgcc ttcaacctgg
      301 ttttccgcga cgcgcacgag gccgtcgtag tcgtcggcca gcagcatctc cttggccgcg
      361 cgcgagccct gggaattgac gcgctcgccg accagtgtcg gtcgcggctc ctgcaccagc
      421 gcggtcgccg cgatcatcga gctgaggcgc ggcgggcgtg gcgcgggccg cgcgcgtacc
      481 ggcagcgtcg cgcagcgatc ggcgatcgcg cggatgtggt cgggcgtcgt gccgcagcaa
      541 ccgccgacga tcgatactcc gtagcgctcg acaaagccgc cgagcgcctc ggcaagcggc
      601 tcgggcaact cggggaatat cgtctcgcca tcgggcccct gctgtggcag gccggcgttc
      661 gggatgcagt gcaccggcac cgggcagaac tcgccgagaa agcgaatcgc gtcgcgcatg
      721 tcctcgggtc cggtcgagca gttcaacccg atcacgtcga ccttcagcgc ctccagcgtc
      781 gtcagcacgc tgtcgatgtc ggtacccagc agcatcttgc cgccgttcgg cagcagcgac
      841 acgctgcact ggatcggcac ggcgcggccg gccgccttga acgcgtcgcg cgcgccgaag
      901 accgcggcct tgacctcgag aatgtcctgc gccgtttcga tgatgatcag atccacgccg
      961 ccctcgatca ggccggcggc ctgctctgca aagacctcgc gcagttcggc gaaactggtc
     1021 tcgcagaggc ccggctccat cgacgccggc agcatgcctg tcgggccgat cgaaccggcg
     1081 acgaacaggt cttcgccgac cgcgcgccgc gcgatctgag cggccttgac gttgatctcg
     1141 cgcgtgtgct cggccagacc ccactcgccg agcttcagcc gcgacgcctg gaaagtgtcg
     1201 gtttcgacga cgatcgcgcc ggcctcggcc atcgagcggt gcacgccctc gatcacgtcg
     1261 ggtcggttca gcaccagcgc ctcatgcgcg cgacccggaa gcttgtagtc atcctcgagc
     1321 gagagatcga acgtctctag cgttgcgccc atgccgccgt cgaagatgat cacgcgttcg
     1381 cgtgcggtcg ccataaaatc tcggttgctc atgcaccgga tcctacaagt gaaatcgtta
     1441 ttccgagttc attagtcggt tttaccggac ggcgacggtg agtgccgcga ctcggcgatc
     1501 cagccgcccg atccgataaa tcaatcctgt aaaccgatcg tcaggagcga atatcgccat
     1561 gcgccgtcca gtcattcaga gaatccggaa gatcatcggt gcagccgccg tattcgcggc
     1621 cgccctcgtc ataacgttcg ttttggccgg ttgcggcggc aactcgatcg acgacactct
     1681 cgtcaaggaa accggcgcgc atggcgttca acttgaaaag gtctacaacc tttacaacca
     1741 ggacgtgctg aagaaggttt ccagccgcga cctgaaaggc atcaacgccg ccctgaaggc
     1801 cggcgacctg aagcaggcga ctcccggcga ggtgcgccgc gcacaggacg aaatcaactc
     1861 gcgtattaag cggcttgaca agttcgtggc ggctctcaag gccgccaacc gcaagttgaa
     1921 gagcacacct gagccgaatt tcagca
//
LOCUS       DASVHM010000255         1818 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_596288, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000255 DASVHM010000000
VERSION     DASVHM010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_596288"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..440)
                     /locus_tag="VF308_04870"
     CDS             complement(<1..440)
                     /locus_tag="VF308_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7436017.1"
                     /translation="MTAPLDPIKPHTGALALDTIELTKRFGSFTAMDRVTMSVAPGSV
                     HALLGENGAGKSTLVKCVAGSQRPDGGGIVIDGRERDIATPIVARALGIGMVYQHFTL
                     APGMSVAENLLLAGGRTPALIDWGKERRALAEFLRSTPFTLDLDA"
     gene            complement(437..1147)
                     /locus_tag="VF308_04875"
     CDS             complement(437..1147)
                     /locus_tag="VF308_04875"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HEX7436018.1"
                     /translation="MKPFAAIDADPYAWPYDGDLRPANTALVVIDMQTDFCGVGGYVD
                     KMGYDLSLTRAPIEPIRGLMGAMRGLGFHIIHTREGHRPDLCDLPANKRWRSQRIGEG
                     GRGIGDAGPCGRILVRGETGWNIIPELAPLPGEPVIDKPGKGSFCATDLELILRTRGI
                     VNLLLAGITTDVCVHTTMREANDRGFECLLLSDCTAATDAGNHAAALKMVTMQGGVFG
                     AVASSSAVLDALAAKEPA"
     gene            complement(1162..>1818)
                     /locus_tag="VF308_04880"
     CDS             complement(1162..>1818)
                     /locus_tag="VF308_04880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013107456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEX7436019.1"
                     /translation="RKLHPWVPVEAWEPGNLGIPVIDGPKGCKLALIICHDGMFPEMA
                     RECTYKGAEVMLRTAGYTAPIASAWKITNQANAFQNLMVTASVCLCGSDGSFDSMGEG
                     MFCNFDGTVMVEGSGRPDEIITCEVRPDLVREARTHWAVENNPYQLWHRGYVAVMGGA
                     MDCPYTFMHDMVNGRFRLPWEAEVVHTDGTSCGFAPPTRAHDPDNMPPEPVVAARKAA
                     "
BASE COUNT          246 a          612 c          662 g          298 t
ORIGIN      
        1 gcgtcgaggt cgagcgtgaa gggcgtcgag cgcaggaatt cggcgagcgc ccggcgctcc
       61 ttgccccagt cgatcagcgc cggcgtgcgg ccgccggcga gcagcaggtt ctcggccacg
      121 ctcatgcccg gcgcgagcgt gaagtgctgg tagaccatgc caatgccgag cgcgcgggcg
      181 acgatcggcg tggcgatgtc gcgctcgcgg ccgtcgatga cgatgccgcc gccgtcgggc
      241 cgctgcgagc cggccacgca cttgacgagc gtgctcttgc ccgcgccgtt ctcgccgagg
      301 agggcatgca ccgaaccggg cgcgacgctc atcgtcacgc ggtccatcgc ggtgaagctg
      361 ccgaagcgct tggtcagctc gatggtgtcg agcgcgagcg caccggtgtg tggcttgatc
      421 gggtcgagcg gtgcggtcat gcgggctcct tcgcggccag cgcgtcgagc acggccgaag
      481 acgacgcgac ggcgccgaac actcccccct gcatcgtcac catcttcagc gccgcggcgt
      541 ggttgccggc gtcggtggcg gcggtgcagt cggagagcag caggcactcg aagccgcggt
      601 cgttggcttc gcgcatcgtg gtgtgcacgc acacgtcggt ggtgatgccg gcgagcagca
      661 ggttgacgat gccgcgcgtg cgcaggatca gttcgagatc ggtcgcgcag aacgagccct
      721 tgccgggctt gtcgatcacc ggttcgccgg gcaacggtgc gagttcggga atgatgttcc
      781 agcccgtctc gccgcgcacc aggatgcgcc cgcacggccc cgcgtcgccg atgccgcggc
      841 cgccttcgcc gatccgttgc gagcgccagc gcttgttggc cggcaggtcg cagaggtcgg
      901 ggcgatggcc ctcgcgggtg tggatgatgt ggaagccgag cccgcgcatc gcccccatca
      961 ggccccggat cggctcgatc ggcgcgcgcg tcaggctcag gtcgtagccc atcttgtcga
     1021 cgtagccgcc gacgccgcag aagtcggtct gcatgtcgat gacgacgagc gcggtgttgg
     1081 ccgggcgcag gtcgccgtcg tacggccagg cgtaggggtc ggcgtcgatg gcggcgaacg
     1141 gtttcatcgg cggcgacctc gtcaggcggc cttgcgcgcc gcgaccacgg gctcgggcgg
     1201 catgttgtcg gggtcgtggg cgcgcgtcgg cggcgcgaag ccgcacgacg tgccgtcggt
     1261 gtgcaccacc tcggcttccc acggcagccg gaagcgcccg ttcaccatgt cgtgcatgaa
     1321 cgtgtacggg cagtccatcg cgccgcccat caccgcgacg tagccgcggt gccagagctg
     1381 gtacgggttg ttctcgacgg cccagtgcgt gcgcgcttcg cgcaccaggt cgggtcgcac
     1441 ttcgcaggtg atgatctcgt cggggcggcc cgagccctcg accatcacgg tgccgtcgaa
     1501 gttgcagaac atgccttcgc ccatcgagtc gaagctgccg tcgctgccgc acaggcacac
     1561 gctcgccgtc accatcaggt tctggaacgc gttggcctgg ttggtgatct tccacgcgct
     1621 tgcgatcggc gcggtgtagc cggccgtgcg caacatgact tctgcgccct tgtaggtaca
     1681 ctcccgcgcc atctcgggga acattccgtc gtggcagatg atgagggcga gcttgcagcc
     1741 cttcggcccg tcgatcacgg ggatgcccag gttgcccggc tcccaggcct cgaccggcac
     1801 ccacgggtgg agcttgcg
//
LOCUS       DASVHM010000256         2792 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_885445, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000256 DASVHM010000000
VERSION     DASVHM010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_885445"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..414)
                     /locus_tag="VF308_04885"
     CDS             complement(<1..414)
                     /locus_tag="VF308_04885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEX7436020.1"
                     /translation="MPKVTAITSRDNPLLVRLRKLAAQPDAYRRQGEVWLEGEHLCRA
                     WLERRSGAGVQVVIGATAWEIAALRQLASAAERVAVVPDAVMAGLGALETPAPLAFVV
                     RWPGAGIVHADAPSIVLDRLQDAGNVGTILRSAAAF"
     gene            complement(414..1031)
                     /gene="rnhB"
                     /locus_tag="VF308_04890"
     CDS             complement(414..1031)
                     /gene="rnhB"
                     /locus_tag="VF308_04890"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEX7436021.1"
                     /translation="MQSKKFLRARQLSLIFDVNGGLMAGVDEVGRGPLAGPVVAAAVI
                     LDERRPIRGLNDSKLLTAATRERLYDEIRAKALCCSIGAASVDEIDAMNILQAALLAM
                     RRAVDGLRLMPHVVFVDGNQLPRLPMACRAIVGGDAKVRAISAASIVAKVYRDRLCEG
                     LHEEHPEYGFATHKGYCTPEHLAALRRHGACRHHRRSFAPVRDVL"
     gene            complement(1003..2148)
                     /gene="lpxB"
                     /locus_tag="VF308_04895"
     CDS             complement(1003..2148)
                     /gene="lpxB"
                     /locus_tag="VF308_04895"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEX7436022.1"
                     /translation="MTSDAPRFAMVAGEASGDLLAGMLLEGLRARWPGLRAEGIGGPK
                     MAAQGFEAWWPHDKLAVRGYVEVLSHYREIAAIRAALADRLLQAPPDAFIGVDAPDFN
                     LDLEARLKARGVKTIQFVSPSIWAWRGKRIEKIRRATDLVLCIFPFEPPIYAKQGVAA
                     AYVGHPLAGAIPLEVPRAESRAALGIDGEETIVAILPGSRRAEIQYIASRLLGAARAM
                     HAQRPGLRFLVPVVPGLRHLIEPLRRHLAPGLNLDLLDGRSHEALAACDVALVASGTA
                     TLEAALFKRPMVVVYAMHALSWQMSKRMKYQPWVALPNILLRDFAVPELLQGDATPEK
                     IAQAALAWLDDPAACEALARRFRALHEELRCDTAKVATDAIEEVLAR"
     gene            complement(2156..>2792)
                     /gene="lpxA"
                     /locus_tag="VF308_04900"
     CDS             complement(2156..>2792)
                     /gene="lpxA"
                     /locus_tag="VF308_04900"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011794965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEX7436023.1"
                     /translation="IGHDNRIFQFCSLGAVPQDKKYAGEDTALAIGDRNTIREFCTFN
                     IGTAQDAGVTRVGHDNWIMAYVHIAHDCQVGDQTILANNATLAGHVHLGNWVFIGGLT
                     GVHQFVKIGAHAMAGFASAVTQDVPPFMTVDGNPLAVRGFNIEGLRRRGFTAERIAAV
                     KQMHRLLYRSGMTFEQARAAIAALAPALPETAGDIATMGDFLARSTRGIAR"
BASE COUNT          431 a          967 c          979 g          415 t
ORIGIN      
        1 gaaggcggcc gcgctgcgca ggatcgtgcc gacgttgccc gcatcctgga gccgatcgag
       61 cacgatgctc ggcgcatcgg catggacgat gccggcgccc ggccaccgga cgacgaaggc
      121 gagcggcgcg ggcgtctcca atgcgcccag gccggccatg accgcatcgg gcaccaccgc
      181 cactctttcg gccgcgctgg cgagttggcg cagcgcggcg atctcccagg ccgtcgcgcc
      241 gatgacgacc tgaacgccgg cgccgctccg acgctcgagc caagcccggc agaggtgctc
      301 gccttcgagc cagacctcgc cctgcctgcg gtacgcgtca ggctgcgcgg cgagtttgcg
      361 caggcgaacc agcagcgggt tgtcgcgcga cgtgatcgcg gtgaccttcg gcatcagagt
      421 acgtcgcgca ccggcgcgaa gctgcgccga tgatggcgac acgcgccgtg ccggcgcaag
      481 gccgccagat gctcgggcgt gcaatagccc ttgtgggtcg cgaagccgta ctcgggatgc
      541 tcctcgtgca acccttcgca gaggcggtcg cggtagacct tggcgacgat cgacgccgcc
      601 gagatcgccc tcaccttcgc atcaccgccg acgatcgcgc ggcatgccat gggcagacgc
      661 ggcagctggt tgccatcgac gaagacgacg tgcggcatca ggcgcaggcc atcgacggca
      721 cggcgcattg cgagcagcgc ggcctgcagg atgttcatcg catcgatctc gtccacgctc
      781 gccgcgccga tgctgcagca cagcgccttg gcgcggatct cgtcgtagag tcgttcccgc
      841 gtcgctgcgg tcagcagctt cgaatcgttg agcccgcgaa tcggccggcg ttcgtcgagg
      901 atgaccgcgg ccgcgaccac ggggccggcg agcggaccgc gcccgacctc gtcgacgccg
      961 gccatcaggc cgccgttcac gtcgaagatc aggctcagct gcctagcgcg caagaacttc
     1021 ttcgattgca tcggtagcca ccttggcggt gtcgcagcgc agttcttcat ggagggcgcg
     1081 aaagcgccgg gcgagcgcct cgcacgccgc cggatcgtcg agccaggcca gcgccgcctg
     1141 ggcgatcttt tcgggcgtcg cgtcgccctg gaggagctcg ggcaccgcga agtcgcgcag
     1201 caggatgttc ggcagcgcca cccagggctg gtatttcatg cgcttgctca tctgccagct
     1261 gagagcgtgc atcgcataga ccacgaccat cgggcgcttg aagagcgcgg cctcgagcgt
     1321 cgcggtgccg ctcgcgacca gcgccacgtc gcaggcggcg agcgcctcgt gcgaacggcc
     1381 gtcgagcaga tcgaggttca ggcccggcgc gaggtgcctg cgcagcggct cgatcagatg
     1441 gcgcaagccg ggcacgaccg gaaccaggaa gcgcaagcca ggccgttgcg catgcatcgc
     1501 gcgggcggcg ccgagcaggc gcgacgcgat gtactggatc tcggcacgac ggctgccggg
     1561 caggatcgcc acgatggtct cctcgccatc gatgcccagc gcagcccggc tctcggcgcg
     1621 cgggacctcg agcgggatcg cgccggccag cggatgaccc acgtatgccg cggcgacgcc
     1681 ctgcttggca tagatcggcg gctcgaacgg aaagatgcac agcacgaggt cggtggcacg
     1741 gcggatcttc tcgatgcgct tgccgcgcca ggcccagatc gacgggctca cgaactggat
     1801 cgtctttacg ccgcgcgcct tgagccgcgc ctccaggtcg agattgaagt cgggcgcgtc
     1861 gacaccgatg aaggcgtcgg gcggcgcctg cagtagccgg tcggcgagcg cggcgcggat
     1921 cgccgcgatc tcccgatagt ggctcagcac ctcgacgtag ccgcgcaccg cgagcttgtc
     1981 gtgcggccac caggcctcga agccctgcgc cgccatcttt ggaccgccga tgccctcggc
     2041 gcgcaacccg ggccagcgcg ccctcagacc ctccagcaac atcccggcga gcaggtcgcc
     2101 cgaagcctcg cctgccacca tcgcgaaccg aggtgcgtcg ctcgtcatgg ggccttcagc
     2161 gtgcgatgcc gcgggtcgag cgggcgagga aatcgcccat tgtggcgatg tcgccggccg
     2221 tctctggcag cgccggggcg agcgccgcga tcgccgcgcg cgcctgctcg aacgtcatcc
     2281 cggaccggta aagcaaccgg tgcatctgct tgaccgcggc gatccgctcg gccgtgaagc
     2341 cgcgccggcg cagtccctcg atgttgaaac cgcgcaccgc gagcgggttg ccgtcgaccg
     2401 tcatgaaggg cggcacgtcc tgtgtcaccg cgctggcgaa gcccgccatc gcgtgcgcac
     2461 cgatcttgac gaactggtgc accccggtga ggccgccgat gaaaacccag ttgcccaggt
     2521 gcacgtggcc ggcgagcgtc gcgttgttgg cgaggatggt ctggtcgccg acctggcagt
     2581 cgtgggcgat gtgcacatag gccatgatcc agttgtcatg gccgacccgt gtgacaccgg
     2641 cgtcctgcgc ggtgccgatg ttgaaggtgc agaactcgcg gatagtgttg cgatcgccga
     2701 tcgcgagggc ggtgtcttcg ccggcgtatt tcttgtcctg cggcacggcc ccgagcgagc
     2761 agaactggaa gatgcggttg tcgtggccga tc
//
LOCUS       DASVHM010000257         3847 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_305936, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000257 DASVHM010000000
VERSION     DASVHM010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3847
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305936"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..206)
                     /locus_tag="VF308_04905"
     CDS             complement(<1..206)
                     /locus_tag="VF308_04905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007859631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7436024.1"
                     /translation="MSDAGGAEPIIRIERLDKWFGHFQVLTDINLSVRAGERIVICGP
                     SGSGKSTLIRCINRLETAQKGRIVV"
     gene            complement(223..1035)
                     /locus_tag="VF308_04910"
     CDS             complement(223..1035)
                     /locus_tag="VF308_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEX7436025.1"
                     /translation="MIRSPQRRRFAIGAAGLGLAAALPAWLATARAQSVDEIKKKGEI
                     AVGLLVDFPPYGTVNSANEPDGYDADVARLLAKDWGVKLKLVPVTGPNRIPFLLTNKV
                     DVLIASLAITPERAKQVQFSKPYAAATIVLLAAKKTNVKGPADLKGLKVGVARASTQD
                     IALTAVAPPGTEIRRFDDDASGMQALMSGQVDALGCSTTVAAQIEKRAPPGTYEDKFV
                     LRQQVMGVAMRPAQAELEKAVNDFVDRNKANGELDKLYQKWLGTKLPAMQAS"
     gene            complement(1097..1750)
                     /locus_tag="VF308_04915"
     CDS             complement(1097..1750)
                     /locus_tag="VF308_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018905916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEX7436026.1"
                     /translation="MRTFGPGDFLFILAAARWTLALSLIAFIGGAIGGLVVALSRTSD
                     IPWLRNASAAFIQLFQGTPLLLQLFLIFFGAPVLGFDINPWLAAGIALVLNSSAFLGQ
                     IWRGCIEAIPRGQWEAADSLSLSYRDRMRDIILPQAVRIAVAPTVGYMVQIIKGTSLA
                     AIIGFTEITRAGQIINNATFQPLVVFSAVAAIYFAICWPLSLLAAGIERRHRKALAR"
     gene            complement(1842..2513)
                     /locus_tag="VF308_04920"
     CDS             complement(1842..2513)
                     /locus_tag="VF308_04920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007859634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEX7436027.1"
                     /translation="MNYSFQFGAVFAAWPLLLEGTWKTIELSFLAMLGGLAVAIVCAW
                     AKTGGPAPLRGLVNAYIELIRNTPFLVQLFFFFFALPAIGLRWSAHTAALTAMVVNLG
                     AYATEIIRAGIESIPKGQIEAGLALNLKAHEIFRFVVLKPALKAIYPALTSQFILLML
                     SSSVVSVISADDLTSVASNLQSQTFRSFEIYIVVAAIYLALALSFSTLFRVVYRRTFN
                     YPDRR"
     gene            complement(2950..3291)
                     /locus_tag="VF308_04925"
     CDS             complement(2950..3291)
                     /locus_tag="VF308_04925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436028.1"
                     /translation="MSNDPSPLKYMGTQSQETVNMAAAMADDASRGVSAVSSKIGDAA
                     NRAMGKAKETLQSAAGQVRERATTAVTTYTKEDPVRAVLIAAATGALLMSLVAMMARS
                     GARSVKRTLRR"
     gene            complement(3420..>3847)
                     /locus_tag="VF308_04930"
     CDS             complement(3420..>3847)
                     /locus_tag="VF308_04930"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HEX7436029.1"
                     /translation="AGKRLPTEAEWERAARGTEARTYPWGNEDPVAERARFATSAAGP
                     YQGGLAPVGSHGAGQSSDGIQDLAGNASEWVADWYSESFATSDVRNPKGPESGTGKGI
                     RGGGWQEPAERLRSAKRFHASPDNRADDLGFRCARDAAQ"
BASE COUNT          590 a         1266 c         1345 g          646 t
ORIGIN      
        1 acgacgatgc ggcccttctg cgccgtttcg agccggttga tgcagcggat gagggtcgac
       61 ttgcccgagc ccgaggggcc gcagatgacg atccgctcgc cggcccgcac cgacaggttg
      121 atgtcggtca gcacctggaa gtgcccgaac cacttgtcga gccgctcgat gcggatgatc
      181 ggctcggcgc cgccggcgtc gctcatggcc gctgcccccg cgtcagcttg cctgcatcgc
      241 cggcagcttg gtgccgagcc atttctggta gagcttgtcg agctcgccgt tggccttgtt
      301 gcgatcgacg aagtcgttga cggccttctc caactccgcc tgcgcaggcc gcatcgcgac
      361 gcccatcacc tgctggcgca ggacgaactt gtcctcgtag gtgcccggcg gcgcgcgctt
      421 ctcgatttgc gccgccaccg tcgtcgagca gccgagcgcg tcgacctggc ccgacatcag
      481 cgcctgcatt cccgaggcgt cgtcgtcgaa gcggcggatc tcggtgccgg gcggcgcgac
      541 ggccgtgagc gcgatgtcct gcgtgctcgc gcgggcgacg ccaaccttca ggcccttgag
      601 gtcggccggc cccttgacgt tggtcttctt cgcagcgagc agcacgatcg tcgctgccgc
      661 gtagggcttc gagaactgga cctgcttggc gcgctcgggc gtgatcgcga gcgaggcgat
      721 gagcacgtcg accttgttgg tgagcaggaa cgggatccgg ttcgggccgg tgaccggaac
      781 gagcttgagc ttgacgcccc agtccttggc gagcaggcgg gcgacgtcgg cgtcgtagcc
      841 gtcgggctcg ttggcgctgt tgaccgtgcc gtagggcggg aagtcgacca gcaggccgac
      901 cgcgatctcg cccttcttct tgatctcgtc gacgctctgc gcccgggccg tcgccagcca
      961 cgcgggcaag gcggcggcga ggccgaggcc ggccgcgccg atcgcgaagc ggcgccgttg
     1021 gggggatcgg atcatgacgt tgtctcctgt cttggtggtg aagcgatgat gcggcaatcg
     1081 ggcctcccgc gacggctcag cgggcaagcg ccttgcggtg gcggcgctcg atgcccgccg
     1141 cgagcagcga gagcggccag cagatcgcga agtagatcgc cgcgacggcg ctgaagacga
     1201 ccagcggctg gaaggtggcg ttgttgatga tctggccggc acgcgtgatc tcggtgaagc
     1261 cgatgatcgc cgccagcgac gtgcccttga tgatctgcac catgtagccg accgtcggcg
     1321 cgacggcgat tcgcaccgcc tgcggcagga tgatgtcgcg catgcggtcg cggtacgaga
     1381 ggctgagcga atcggcagcc tcccactggc cgcgcgggat cgcctcgatg cagccgcgcc
     1441 agatctggcc gaggaaggcg ctgctgttga ggacaagggc gatgccggca gcgagccatg
     1501 ggttgatgtc gaagccgagc accggcgcgc cgaagaagat gagaaagagc tgcagcaaga
     1561 gcggcgtgcc ctggaagagc tggatgaacg ccgccgaagc gttgcgcagc cacgggatgt
     1621 cgctggtgcg gctgagggcg acgacgaggc cgccgatcgc gccgccgatg aaggcgatca
     1681 gcgagagcgc cagcgtccag cgcgccgccg cgaggatgaa caggaaatcg ccggggccga
     1741 aggtgcgcat tcgcgtcagt cccgccgggc cgccccaagg gactgacacg ccccctcggg
     1801 gggcagcgaa cgaagagagg cgccatcagg ctgtttcatg cctagcgccg gtcggggtag
     1861 ttgaacgtgc gccggtagac gacgcggaac agggtcgaga acgacagcgc gagcgccagg
     1921 tagatcgccg ccacgacgat gtagatctcg aagctgcgga aggtctgcga ctgcaggttc
     1981 gaggcgaccg acgtcaggtc atcggccgag atcaccgaga cgacgctcga gctcagcatg
     2041 aggaggatga actggctcgt cagcgccgga tagatcgcct tcagggcggg cttgagaacg
     2101 acgaagcgga agatctcgtg cgccttcagg ttgagcgcca ggccggcttc gatctggcct
     2161 ttcgggatcg actcgatgcc ggcacggatg atctcggtgg cgtaggcgcc gaggttgacg
     2221 accatcgccg tcagcgctgc cgtgtgtgcc gaccagcgca ggccgatcgc cggcagcgcg
     2281 aagaaaaaga agaacagctg gaccaggaat ggcgtgttgc ggatgagctc gatgtaggcg
     2341 ttgacgagcc cccttagcgg cgccggcccg cccgtcttcg cccaggcgca gacgatcgcc
     2401 accgcgaggc cgccgagcat ggcgaggaac gagagctcga tcgtcttcca ggtgccctcg
     2461 agcaggagcg gccaggcggc gaagacggcg ccgaactgga acgagtagtt cattcgacgg
     2521 cgcgctggcg actcatccaa cgatggtagc ccgggcggac gggtcacccc ggccgccggg
     2581 ttgaagggcc ggattcgccc ggctacgatt cccggctacg aacgtcaccg aacgccccga
     2641 cccgtcgatc cagcgtcgat ggatcgtcag ccgcatcgtc ttcggcgtcg gcgtcgcctt
     2701 gctggtcgtc ctgtcggcgg gcctggcggg gacggccttc ctcttctggg cgttcgaagg
     2761 cggaatcttc ggtggtggcg gcgcgacgcc gctgtgggtg tatccggcgc tcgtctacct
     2821 cacttacttc gtcgtccgac gcgtgaaatc gtgtcgggtc ggcggcgaac gcatggccca
     2881 cgcctggcga cgatctctac gacctggagc gcgcctgcat ggccaaggct gtcgacggca
     2941 cccctgggtt catctccgga gggtgcgttt caccgaccga gctcctgacc gcgccatcat
     3001 cgcaacgagg ctcatcaaca gcgcgccggt ggccgccgcg atcaagaccg cccggaccgg
     3061 atcctctttc gtgtacgtcg tcacggccgt cgtcgcccgc tcgcgaacct gcccggcggc
     3121 tgactgaagc gtttccttcg ccttgcccat ggcccggttc gcggcgtcac cgatcttgct
     3181 gcttacggcg gaaacgccgc ggctggcatc gtcagccatg gcggccgcca tgttcacggt
     3241 ctcctggctt tgcgtaccca tgtatttcag agggctcgga tcgttgctca tgctggtgct
     3301 cctatgactg cgccagggcg cggtggtcgt cagaggaatg tagggacttc gcggcgaggg
     3361 ccccaccatc cgttcgtccg attcgctgta ggaccgagcc gtctcgcgac tgctcgagat
     3421 cactgcgcgg cgtcccgcgc gcagcgaaaa ccgagatcgt cggcacggtt gtccggtgat
     3481 gcatggaagc gcttggcgga cctgagtcgc tcggccggct cttgccatcc cccaccacga
     3541 atgcccttgc ccgttccgct ctcgggaccc ttggggtttc gcacgtcgct ggtcgcgaaa
     3601 ctttccgagt accagtcggc cacccactcg ctcgcgttgc ccgcgaggtc ttgaatgccg
     3661 tcgctgctct gcccggcgcc atggcttccc accggcgcca gccctccctg gtacgggccg
     3721 gctgcgctgg tcgcgaatcg ggcacgctcg gccacagggt cctcgttgcc ccagggatag
     3781 gtccgcgcct ccgtgccgcg agccgcgcgt tcccattccg cttcggtcgg cagacgcttg
     3841 ccggccc
//
LOCUS       DASVHM010000258         2567 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_740657, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000258 DASVHM010000000
VERSION     DASVHM010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_740657"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(105..935)
                     /locus_tag="VF308_04935"
     CDS             complement(105..935)
                     /locus_tag="VF308_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011483712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidylate kinase family protein"
                     /protein_id="HEX7436030.1"
                     /translation="MTVIALTQEMGSLAKEVAEQVARDLGLQVMRHEIVDHVASRMHV
                     SKSLINRLREGKAGTIERLRADRASLSVYSTEEVLDVAARGDVVLRGWGATCLLRALP
                     HVVCVRVTRPFEQRVAWLQGHHLGSDDLAFAEDEIRRSDRAHAARMHAQFGVTWGDPL
                     LYDLVLNTDRVSVESCALQIAALARRPEFAETDASRAMLQNMALDARVRAALRADEAT
                     KEVDVTVASVAGHVVLSGMVLDAEERPAAERVVQAVAGVAAVDNQLRVIARSRLFPAS
                     "
     gene            complement(1230..>2567)
                     /locus_tag="VF308_04940"
     CDS             complement(1230..>2567)
                     /locus_tag="VF308_04940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HEX7436031.1"
                     /translation="CIYWGALFGGAITSILFNIPGEPWSVATTFDGYPLAQKGHAGQA
                     LTAAFTSSFVGALVAVLMITFLAPMVARFALRFGAPEFFAVYLLTFCSFVGMGKGSPF
                     KILVSMTIGFALAAVGMDTVTGQLRMTFGQAELMRGFDFLIAVIGLFGIGEILLSMEE
                     GLAFSGKAARINPKVVWETWKLLPRYWVTSLRSALVGIWMGITPGGATPASFMSYGLA
                     KKMSRNGARFGTGELEGVIAPETAAHAAGTSALLPMLALGIPGSPTAAVLLGGLLIWG
                     LQPGPLLFVEQKDFVWGLIASMYLGNIAGLIVVLTTVPLFASILRIPFSIIAPVIIVI
                     CAIGAYTVHNAMLDIWFMLGFGLVGYLFKKLDYPLAPLVLALVLGDKAEDSFRQSMLV
                     SQGDVTIMWSNPLVGSITTLAFLLLFWPLISKLLGLVRRPKKLDPILAEQPVD"
BASE COUNT          441 a          877 c          888 g          361 t
ORIGIN      
        1 ggcgttgcgc gctcgttgtg tgccaaaggc acacggcctc gcccgcgcct tgcccggcgg
       61 cccgcagcgc tcctgcgcga gtcctccctt agcgttaaca ggccctagga cgccgggaag
      121 agccgcgacc gggcgatcac ccgcagctga ttgtcgacgg ccgccacccc ggccacggcc
      181 tggaccaccc gctcggccgc cggccgctcc tcggcgtcga gcaccatgcc gctgagaacg
      241 acgtggccgg cgacgctggc gaccgtgacg tcgacttcct tcgtcgcctc gtcggcgcgc
      301 agcgcggcgc gaacgcgcgc atcgagcgcc atgttctgca gcatcgcgcg cgaggcatcg
      361 gtctcggcga attcagggcg ccgcgcgagc gcggcgatct gcagggcgca gctctcgacc
      421 gagacgcggt cggtgttgag gaccaggtcg tagagcagcg ggtcgcccca ggtgacgccg
      481 aactgggcgt gcatgcgcgc cgcatgggcg cggtcgctgc gccggatctc gtcttccgcg
      541 aaggcgaggt cgtcgctgcc gaggtggtgg ccctgcagcc aggcgactcg ctgctcgaac
      601 ggccgcgtca cgcgaacgca gacgacgtgc ggcaaggcgc gcagcaggca ggtggcgccc
      661 cagccgcgca ggacgacgtc gccgcgcgca gcgacatcga gcacctcctc ggtcgagtag
      721 accgagaggc tcgcccggtc ggcgcgaagg cgctcgatcg ttccggcctt gccctcccgc
      781 agccgattga tcaggctctt ggagacgtgc atccggctcg ccacatggtc gacgatctcg
      841 tggcgcatga cctgcaggcc gaggtcgcga gcgacctgct cggcgacttc cttggcgagc
      901 gaacccatct cctgggtcag agcgatgacg gtcatggcgg cgccttttgg cctgttaggc
      961 cctagggcct gttaacgcta tgggagggct cgcgccggtg tcgcgcaggc caccgggcaa
     1021 ggcgcgcgcg aggccgtgtg cctttggcac acaacgagcg cgcaacgccg cccggcggcc
     1081 tgcgcgacac cggccctgcg ggtgatctct gcaaacgggc gcccgccgcg ttgcaaatgc
     1141 tcgccgtagc agccgctacg gctgcgcttt gcgccttgcg ggcgcccgtt tgcagagtca
     1201 cgcgagtcct cccatagcgt taacaggccc tagtcgacgg gttgctcggc caggatcggg
     1261 tcgagcttct tcggccgcct gaccaggccg agcagcttcg agatcagcgg ccagaacaga
     1321 agcaggaaag ccagcgtcgt gatcgagccc accagcgggt tcgaccacat gatcgtcaca
     1381 tcgccctgcg agaccagcat ggactggcgg aacgaatcct cggccttgtc gcccagcacc
     1441 aatgccagca ccagcggcgc cagcgggtag tcgagcttct tgaacaggta gccgacgagg
     1501 ccgaagccga gcatgaacca gatgtcgagc atggcgttgt gcaccgtgta ggcgccgatc
     1561 gcgcagatga cgatgatcac cggtgcgatg atggagaacg ggatgcgcag gatcgacgcg
     1621 aagagaggca cggtcgtcag cacgacgatc aggccggcga tgttgccgag gtacatgctg
     1681 gcgatcaggc cccagacgaa atccttctgc tcgacgaaca gcagcggtcc cggctgcagg
     1741 ccccagatga ggagcccgcc gagcagcacc gcggccgtcg gcgagccggg gattccaagc
     1801 gccagcatcg gcagcagcgc gctggtgccg gcggcgtgcg ccgcggtctc gggcgcgatc
     1861 acgccctcga gctcgccggt gccgaacctg gcgccgttgc gcgacatctt cttggcgagg
     1921 ccatagctca tgaacgaggc cggcgtcgcg ccgcccgggg tgatgcccat ccagatgccg
     1981 accagcgcgc tgcgcagcga cgtcacccag tagcgcggca gcagcttcca cgtctcccac
     2041 accaccttcg ggttgattcg cgccgccttg ccggagaagg ccaggccctc ttccatcgac
     2101 agcaggatct cgccgatgcc gaacaggccg atcacggcga tcaggaaatc gaagccgcgc
     2161 atcagctcgg cctggccgaa ggtcattcgc agctggccgg tgacggtgtc catgccgacc
     2221 gcggcgaggg cgaagccgat cgtcatcgag acgaggatct tgaagggcga tcccttgccc
     2281 atgccgacga agctgcagaa ggtgagcaga tagacggcga agaactcggg cgcgccgaag
     2341 cgaagcgcga acctcgcgac catcggggcg aggaaggtga tcatcagcac ggcgacgagg
     2401 gcgccgacga acgacgacgt gaacgccgcc gtcaaggcct ggccggcgtg gcccttctgc
     2461 gccagcggat agccgtcgaa ggtggtcgcc accgaccacg gctcgcccgg gatgttgaac
     2521 aggatcgacg tgatcgcgcc gccgaagagc gcaccccagt agatgca
//
LOCUS       DASVHM010000259         2751 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_596493, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000259 DASVHM010000000
VERSION     DASVHM010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_596493"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..971
                     /locus_tag="VF308_04945"
     CDS             <1..971
                     /locus_tag="VF308_04945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004528370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydrogenase 4 subunit F"
                     /protein_id="HEX7436032.1"
                     /translation="LCGVGIALALFGTVLLYMAAEKVLGAEGGALLWTHLDTVKTRLD
                     PNIITLAFAFLFIGYGTKVGLVPLHNWLPDAHAEGPTPVSAVLSGLLLNVAMYALLRC
                     KVLTDGALNNALAGQLLMGFGLASVVVAAFFLSRQKDVKRMFAYSSIEHMGLIAFAFG
                     LGGPIANFAGLLHMTVHSLTKSAIFFAVGHATQKAGTQVMSEIRGLIKVSPTVGWGMM
                     LGSLAILGMPPFGVFASEFLILTTAMREQPWATPILLLALGVAFASVLGRVLPMVFGE
                     TSVKPLPHPPALLPVFVHLGLGLMLGLYVPPYLVGWYTQAARMLGG"
     gene            1030..2538
                     /locus_tag="VF308_04950"
     CDS             1030..2538
                     /locus_tag="VF308_04950"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004539162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEX7436033.1"
                     /translation="MWRASVDADAWQVAARAVAAAGGRLVALWGADRGWRETGGFAVC
                     AAYALADGIAWLDLPLAADAPAYPDLSAQFSCAVRMQRAAADLLGIVAIGAHDTRPWL
                     DHGAWPADRFPLHEQAPDGAVGERAKVVDYPFVRVAGDGVHEIPVGPVHAGIIEPGHF
                     RFSVVGEKVLRLEERLGYTHKGIEKRFTELAPLDAHRLAGRVSGDSTVAYAWAYCMAL
                     EAAAACAIPPRAACLRALLLERERVANHLGDLGALGNDAALTFGLAQFSRLRENWLRV
                     SKEVFGHRLMMDAVVPGGTACDVDGVAAERMRIQCEATLSEVKELRSIYDEHAGLQDR
                     FMGTGHVSAELAANLGLTGLAARASGRTMDLRSDHPWPPYDTLAVKTATHHGGDVAAR
                     VAVRFVELFESLRLIRAILSALPGGERRGTVSLAAGSTVGAGWVEGWRGEVFVALELD
                     GEAQDHRIRRCHCHDPSWQNWPVIEHAVIGNIVPDFPLINKSFNLSYSGHDL"
     gene            2570..>2751
                     /locus_tag="VF308_04955"
     CDS             2570..>2751
                     /locus_tag="VF308_04955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase"
                     /protein_id="HEX7436034.1"
                     /translation="MWKILRQIGRTGIRSEAPPAYDDGLRVEAEQIQRDLLTTLGRAL
                     AIRQVDAGSCNGCELE"
BASE COUNT          372 a          982 c          929 g          468 t
ORIGIN      
        1 tcctctgcgg cgtcggcatc gcgctggccc tgttcggcac ggtgctgctc tacatggctg
       61 ccgagaaggt cctcggcgcc gagggcggag cgcttctctg gacccacctc gacacggtga
      121 aaacccggct cgacccgaac atcatcaccc tcgccttcgc cttcctgttc atcggctacg
      181 gcaccaaggt cggcctggtg ccgctgcaca actggctgcc cgacgcccat gccgaaggcc
      241 cgacgccggt gtcggcggtg ctctcgggcc tgctcctgaa cgtggcgatg tacgccctgc
      301 tgcgctgcaa ggtgctcacc gacggcgccc tgaacaacgc cctggccggc cagctgctga
      361 tgggcttcgg cctggcgtcg gtcgtcgtcg cggcgttctt cctctcgcgc cagaaggacg
      421 tcaagcgcat gttcgcctac tcgtcgatcg agcacatggg cctgatcgca ttcgccttcg
      481 gcctcggcgg gccgatcgcc aacttcgccg ggctgctgca catgacggtg cattcgctca
      541 ccaagtcggc gatcttcttc gccgtcggcc atgcgacgca gaaggccgga acgcaggtga
      601 tgagcgagat ccgcggcctg atcaaggtca gccccaccgt cggctggggg atgatgctcg
      661 ggtcgctcgc gatcctcggc atgccgccgt tcggcgtctt cgcgagcgag ttcctgatcc
      721 tcaccaccgc gatgcgcgaa cagccctggg ccacgccgat cctgctcctc gcgctcggcg
      781 tcgccttcgc ctcggtgctc ggtcgggtcc tgccgatggt cttcggcgaa acctcggtga
      841 agccgctgcc gcacccgccg gcactgctgc cggtgttcgt ccatctcggg ctcgggctga
      901 tgctgggcct ctacgtcccg ccctacctcg tcggctggta cacccaggcg gcgcggatgc
      961 tcggaggttg aggccgtgcg gattcccggg atagatctcg aattcgatcg cctctcggca
     1021 cccgtgccaa tctggcgcgc gagcgtggac gccgacgcct ggcaggtcgc cgctcgtgcc
     1081 gtcgccgccg ccggcggtcg tctcgtcgcg ctctggggcg cggaccgggg ctggcgcgag
     1141 accgggggct tcgccgtctg cgcggcgtat gcgctcgccg atgggatcgc ctggctcgac
     1201 ctgccgctcg ccgccgatgc gccggcctat cccgatctgt cggcgcagtt ctcgtgtgcg
     1261 gtccgaatgc agcgcgccgc tgccgacctg ctcgggatcg tagcgatcgg cgctcatgac
     1321 acgcggccgt ggctggacca tggtgcctgg cccgcggacc ggtttccatt gcacgagcag
     1381 gcaccggatg gcgcggtcgg ggaaagagcg aaggtcgtcg actacccctt cgtccgcgtt
     1441 gccggcgacg gtgtccacga gatcccggtc ggcccggtgc acgcggggat catcgaaccg
     1501 gggcatttcc gcttttcggt cgtcggcgaa aaggtgctgc gcctcgagga gcgcctcggc
     1561 tacacccaca agggaatcga aaagcgattc accgagctgg ctccgctcga cgcgcatcgc
     1621 ctcgccgggc gcgtgtccgg cgattcgacg gtcgcttacg cgtgggccta ctgcatggcg
     1681 ctggaagccg ccgcggcctg cgcgattccg ccccgcgccg cctgtctgcg ggcgctgctg
     1741 ctcgagcgcg aacgcgtcgc caaccacctc ggcgacctcg gcgcgctcgg caacgacgcc
     1801 gcgttgacgt tcggcctggc ccaattctcg cgcctgcgcg agaactggct gcgcgtgtcg
     1861 aaggaggtct tcggccaccg gctgatgatg gatgccgtcg ttcccggcgg aaccgcctgc
     1921 gatgtcgacg gcgtggcggc ggagcggatg cgtattcaat gcgaagccac gctgtccgaa
     1981 gtcaaggagc tgcgctcgat ctacgacgag cacgcgggct tgcaggatcg cttcatgggc
     2041 accggacacg tgagcgcgga gctggcggcc aatcttggcc tgacggggct cgcggcccgc
     2101 gccagcggcc ggacgatgga cttgcggtcg gatcacccgt ggccgcccta cgacaccctg
     2161 gccgtgaaaa ccgcgaccca ccacggcggc gacgtcgcgg cgcgcgtcgc cgtgcgcttc
     2221 gtcgagctgt tcgaatcgtt gcgcctgatc cgggccatcc tctccgcgct gccgggaggc
     2281 gagcgtcgcg gcacggtcag cctggccgcg ggttccaccg tcggcgccgg ctgggtcgaa
     2341 ggctggcgcg gcgaagtctt cgtcgcgctc gagctcgacg gcgaggccca ggaccaccgc
     2401 attcgccgct gccactgcca cgatccctcc tggcagaact ggcccgtgat cgagcatgcg
     2461 gtgatcggca acatcgttcc cgacttcccg ctgatcaaca agtcgttcaa cctcagctat
     2521 tcggggcacg acctgtgagc tgccgtcacg agcgcgggac ctgaacgcca tgtggaagat
     2581 cctccgccag atcggccgca ccggcatccg cagcgaagcg ccgccggcgt acgacgacgg
     2641 gctgcgggtc gaggccgagc agatccagcg cgacctgctc accaccctgg gccgcgctct
     2701 cgcgatccgc caggtcgacg ccggttcgtg caacggctgc gagctcgaga t
//
LOCUS       DASVHM010000260         6287 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_957816, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000260 DASVHM010000000
VERSION     DASVHM010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6287
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_957816"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..481
                     /locus_tag="VF308_04960"
     CDS             <1..481
                     /locus_tag="VF308_04960"
                     /inference="COORDINATES: protein motif:HMM:NF014456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436035.1"
                     /translation="LANQTTMLMSESLELGELVKAAMQARYGESEIAKHFQAFDTICS
                     ATQDRQDAVITLLREKPIDLMIVIGGYNSSNTCNLARICAASRPTFHIADPACLRSPE
                     EIRHRPVGAKQEVTSTGWLPPADAVTIGLTSGASTPDNLVGAAIAKLEAFCLGDGGS"
     gene            603..1007
                     /locus_tag="VF308_04965"
     CDS             603..1007
                     /locus_tag="VF308_04965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HEX7436036.1"
                     /translation="MALTTPVGAQSFAWWKSEQFQKDVGLTTEQCARIDAVFQATLPK
                     LKQNREELDKLEADLSKMIGDNADERLVIRQIDRVEAARAATSKMRTLMLLHERQVLT
                     REQLVKFKAAYEQWEKDHHRPPHTETAAPVKK"
     gene            1052..2737
                     /locus_tag="VF308_04970"
     CDS             1052..2737
                     /locus_tag="VF308_04970"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX7436037.1"
                     /translation="MTRNGSKWMMMCAAAVLAVFGALETPAAAQQLSEARIHELISEA
                     AKQVGTTQQPTQVPAATAGTTPPVIRLTLEEAVKAALDHNLDIAVQRLNPEINDISYA
                     SLEGIYHPALTSTIFQSGTTTPANSQISGAASGATGVTADVFTANGGITQNLRWGGGS
                     YIATLNNNRQTTTSNNALFNPSYNSNWSAAYTQPLLRNFRIDSNRQQLAVTKINRDIS
                     DVQLRSTITNTLSNVRNAYWDYVFAVQSVDVAQQSLTLGQQLVKDNQTRVEVGTMAPI
                     DVVSAQSQAAAALQNLVVAQSTARTAEISLKRLIVAGTQDPIWSSSLDPVDRPDFRPE
                     AVDLDAAVRRALNERTDVTIAKKTVQQNDVTLKFLQDQLKPQADLVGTYGVQGIGGTQ
                     LIRGSTLGSAADTTIPGGLTDAFSTLFRNNFPRWTIQLNIQYPLGLSAQQASVAKARV
                     QLNQIQAQLKQIELQVATDVTNAAVTARSNAERVQAAQAAREFAQKTLDAEQSKFEVG
                     MSTNYNVILIQRDLATAQNNELQAILNYRKSLVELDRLQQTTLGSLGITILGK"
     gene            2771..4450
                     /locus_tag="VF308_04975"
     CDS             2771..4450
                     /locus_tag="VF308_04975"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX7436038.1"
                     /translation="MKRAIIVILIIGAIGAVAGAYYIRRGGTEPQINTSQVTRGDITD
                     TVGATGTLQAVTTVQVGSQVSGNISWLGADFNSIVKKNQVIAKLDPSLFEAQLQQAKA
                     NLVKSQADTERNKVALTDAQQKYTRSKELAAKSLLPQSDLDAAKIAVDSAQASLQSSQ
                     ATVEQSKASLYQNQVSLDHTIINAPIDGIVIQRSVDVGQTVAASMSAPTLFILAADLT
                     KMQVNANIDESDVGRIRPGQHVTFHVDAYPTESFQGTVAQIRLQPVVVQNVTTYGTVI
                     DVPNQQLKLKPGMTATVKVEIAKRSDVLRVPNASLRFRPSPDMFAALNQAVPPEALAS
                     ASTRGQGGRSGGRGGQAGQGSPSAQPSPSAPAASAQQAPGLGAVVAPPASGGRGGVAA
                     GGQGFGGQGGGDPAARLERFKAMTPDEQKQFIDRMKSNGRDTSAFEALVAKAPAGKKP
                     GAAAKSALPTPKYGAVQSGETIDALFAPLPVVETRGRAWLYMDKQLKPVNLRLGITDG
                     TNTELLSGELQQGMELVTSILLGSVRPTTTPAAGAGNPLMPSQRGGPGRGR"
     gene            4455..5201
                     /locus_tag="VF308_04980"
     CDS             4455..5201
                     /locus_tag="VF308_04980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013519209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436039.1"
                     /translation="MPTVISVKSLVKTYIVGEMEVKALRGVDLEVERGEFLSVTGPSG
                     SGKSTFMHIIGCLDRPTSGQYLLDGQDVSRMTKDQLAAIRNKKIGFVFQGFNLLTRTS
                     ALDNVELPLLYGANGMKTAERHKRAMDVLKAVGLENRADHHSNQLSGGQQQRVAIARS
                     LVNEPSILLADEPTGNLDTRTSIEVMEIFQKLNLETGITVILITHEVDIAEYGTRTVA
                     FRDGVVVTDKQNTRRRMAQDELAALPAPTA"
     gene            5211..>6287
                     /locus_tag="VF308_04985"
     CDS             5211..>6287
                     /locus_tag="VF308_04985"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436040.1"
                     /translation="MSVFMIIRIAFKALSRNKMRTALTMLGMIIGVAAVITMVALGTG
                     AQTSIDAAVQSAGTNTVIVSAGNFTQGGVRQGQGNASTLIPDDAVAISQLPGILYTAA
                     GSSTRAQMVAGNQNWNTQAQGTDVDLPLINAWPVDDGSFFTTQDVTQAAKVVVLGTVV
                     RDQLFGTDSEPVGQVIQIQHQPFTVVGVMASKGQSSMGQDRDDTVFIPYTTVMKKMRG
                     VTFINNVTVAAAEASQVTAVADRIATLLRVRHKIAPGDPDDFMVRTIEEMASVRKEAT
                     QTMTALLASIAGVSLLVGGIGIMNIMLVSVTERTREIGLRMAIGARGRDVLLQFLVEA
                     IVLSLFGGGIGIALGFGVAQGVTLW"
BASE COUNT         1225 a         2079 c         2046 g          937 t
ORIGIN      
        1 cctcgccaac cagacgacga tgctgatgtc ggagtcgctc gagctgggcg aactcgtcaa
       61 ggccgcgatg caggcgcgct acggcgaaag cgagatcgcg aagcacttcc aggcgttcga
      121 caccatctgc agcgcgaccc aagatcggca ggacgccgtc atcaccctgc tgcgggagaa
      181 gccgatcgat ctgatgatcg tcatcggcgg gtacaacagc agcaacacgt gcaacctcgc
      241 gcgcatctgc gccgcgtcgc gcccgacctt tcacatcgcg gatccggcgt gtctgcgttc
      301 gcccgaggag attcggcacc ggccggtcgg cgcgaagcaa gaggtcacct cgaccggctg
      361 gctgccgccg gccgacgcgg tcacgatcgg cctcacgtcg ggcgcctcga ccccggacaa
      421 tctggtcggc gccgccatcg ccaaactcga agcgttttgc ctgggggacg gcggttcgta
      481 aaaatttgtc tccggcgaaa tacatctgac ccgctcgtcg tatctcctca tgtaacagct
      541 ttttcagagg tttacgcatg aggccgtccg ttttcggccg gtgcctggtt gcgctgcttc
      601 tggtggcgct gacgaccccg gtcggtgcac aatcgtttgc ttggtggaag tcggaacagt
      661 tccagaaaga cgtcgggctg acgaccgagc agtgcgcccg catcgacgcg gtgtttcagg
      721 ccacgcttcc caagctcaag cagaaccggg aagagttgga caagctcgag gccgatctgt
      781 cgaagatgat cggcgacaac gccgacgagc gtctggtgat tcgccagatc gatcgcgtgg
      841 aagcggcgcg tgccgcaacc agcaagatgc gcacgctgat gctcctgcac gaacgccagg
      901 tgctgacgcg cgagcagctc gtcaagttca aggccgcgta cgagcagtgg gaaaaagatc
      961 atcaccggcc gcctcacacg gagacggccg cgcccgtgaa gaagtagccg caagtctctt
     1021 gtcacagagc ttgtcacaga ggatgaacgc aatgacacgg aacggatcga agtggatgat
     1081 gatgtgcgcc gccgccgtcc tggcggtctt cggcgctctg gagacgcctg ctgcggcgca
     1141 gcagctctcc gaggcgcgca tacacgaact catcagcgaa gccgccaaac aggtggggac
     1201 gacgcagcag ccgacgcagg tgccggcggc gacggcgggc acgaccccgc cggtcatcag
     1261 gctgacgctg gaagaggcgg tcaaggcggc gctcgaccac aacctggata tcgccgtcca
     1321 acgcctgaat cccgagatca atgacatctc gtacgcgagc ctcgagggca tctaccaccc
     1381 ggcgctgacc tcgacgatct ttcagtcggg cacaacgacg cccgcaaaca gccagatcag
     1441 cggcgcggcg agcggcgcaa ccggcgtgac ggccgatgtg tttaccgcca atggcgggat
     1501 cacccagaac cttcgctggg gaggcggctc gtacatcgcg acgttgaaca acaaccgcca
     1561 gacgaccacg agcaacaacg ccctgttcaa cccgtcgtac aactcgaact ggagcgcggc
     1621 ctacacgcag cctctgctgc gcaacttccg catcgattcc aaccgccagc agttggcggt
     1681 caccaagatc aaccgcgaca tctcggacgt gcagttgcgc tcgacgatca ccaacacgct
     1741 ctcgaacgtg cgcaatgcct actgggacta cgtcttcgcc gtgcagtcgg tggacgtggc
     1801 gcaacaatcg ctcaccctgg gccagcaatt ggtgaaggac aaccagacgc gcgtcgaagt
     1861 cggcacgatg gcgccgatcg acgtcgtctc ggcgcagtcg caggcggcgg cggcgctgca
     1921 gaacctcgtc gtcgcgcagt cgaccgcacg caccgcggaa atctcgctca agcggctcat
     1981 cgtcgccggc acgcaggatc cgatctggag ctcgagcctc gacccggtcg atcggccgga
     2041 cttccggccc gaggccgtcg atctcgacgc ggcggttcgg cgcgcgctga acgagcgcac
     2101 cgacgtcacc atcgcgaaga agacggtgca gcagaacgac gtgacgctga agttcctcca
     2161 ggaccagttg aagccgcagg ccgacctggt ggggacctac ggcgtgcaag gcatcggggg
     2221 aacccagttg attcgcggga gtacgctggg gagcgcggcg gacaccacca tccccggcgg
     2281 cctcactgac gcgttcagca cgctgttccg caacaacttc ccccgttgga cgatccagct
     2341 caacattcag tacccgctgg ggctcagcgc gcagcaggcg tcggtcgcga aggcgcgcgt
     2401 gcagctcaat cagattcagg cgcagctcaa acagatcgag cttcaggtcg cgaccgacgt
     2461 taccaatgcc gccgtcaccg cgcgcagcaa cgccgagcgc gtgcaggcgg cgcaggcggc
     2521 gcgggagttc gcgcagaaga cgctcgacgc cgagcagagc aagttcgagg tcggcatgtc
     2581 gaccaattac aacgtcatcc tgatccagcg cgatctcgcc accgcgcaga acaacgagct
     2641 gcaggcgatc ctcaactatc gcaagtcgct cgtcgagctg gaccggctgc agcagaccac
     2701 gctcggcagc ctcgggatca cgatcctcgg caagtagcgg cgcgaaattg tcgcgagcaa
     2761 cgggagagtc atgaaacgcg cgattatcgt cattcttatc atcggcgcca tcggcgccgt
     2821 ggccggcgct tattacattc ggcgcggcgg caccgagccc cagatcaaca cgtcgcaggt
     2881 gacccggggc gacatcaccg acacggtcgg cgccaccggc acgctccagg ccgtgacgac
     2941 ggtgcaggtc ggcagccagg tgtcgggcaa catctcctgg ctcggcgccg acttcaactc
     3001 gatcgtgaag aagaatcagg tgatcgcgaa gctcgatccg tcgctcttcg aagcgcagct
     3061 gcagcaggcg aaagccaatc tggtcaagtc gcaagccgat accgagcgca acaaggtcgc
     3121 gctgaccgac gcgcagcaga aatacacccg atcgaaggag ctcgcagcga agagtctgct
     3181 gccgcagagc gacctcgatg ccgccaagat cgcggtcgat tcggcgcagg cgtcgctgca
     3241 gtcgtcgcag gcgaccgtcg agcagtcgaa ggcgtcgctg tatcagaacc aggtcagcct
     3301 cgatcacacg atcatcaacg cgccgatcga cggcatcgtg attcagcgca gcgtcgacgt
     3361 cgggcagacg gtcgccgcca gcatgtcggc gccgacgctc ttcatccttg ccgccgacct
     3421 gacgaagatg caggtcaacg cgaacatcga cgagtccgac gtcggccgca tccgccccgg
     3481 ccagcacgtc acgttccacg tcgacgcgta tccgacggag agcttccaag gaaccgtcgc
     3541 gcaaatccgg ctgcagccgg tcgtcgtgca gaacgtcacg acgtacggca cggtcatcga
     3601 cgtgcccaat cagcagctga agctcaagcc cgggatgacg gcgaccgtca aggtcgagat
     3661 cgccaagcgc tctgacgtgc tgcgcgtgcc gaatgcgtcg ctgcgcttcc gcccgtcgcc
     3721 agatatgttc gcggcgctca accaggccgt accgcccgag gcgctggcca gtgccagcac
     3781 ccgcgggcaa ggcggccgca gcggcggccg cggcggacaa gccggacagg gttcgccgag
     3841 tgcacagccg tcaccgagtg cgccagcggc atcggcgcag caggcgcccg gcctcggcgc
     3901 cgttgtggca cctcccgcgt cgggcggccg cggcggtgtt gccgccgggg gccagggctt
     3961 cggcggccaa ggtggcggcg atccggccgc tcgcctcgag cgcttcaagg ccatgacgcc
     4021 cgacgagcag aagcagttca tcgaccgcat gaagtcgaac ggccgcgaca cgagcgcctt
     4081 cgaagcgctg gtggccaagg cgcccgccgg caagaagccc ggcgccgcag ccaagagcgc
     4141 gttgcccacc cccaaatacg gcgcggtgca gtcgggagag acgatcgacg cgctcttcgc
     4201 gcccctgccg gtggtcgaga cgagaggccg cgcgtggctg tatatggata agcagctcaa
     4261 gccggtgaac ctgcggctcg gcatcaccga cggcacgaac acggagttgc tgagcggcga
     4321 actacagcag ggaatggagc tcgtgacgag catcctgctg ggctctgtgc ggccgacgac
     4381 gaccccggcc gccggcgcgg gcaacccgct catgccgagt cagcgcggcg gcccggggcg
     4441 aggccgctag acccatgccg accgttattt cagtcaagag cctcgtcaag acgtacatcg
     4501 tcggcgagat ggaagtaaag gcgttgcgcg gcgtggacct cgaggtcgaa cgcggcgagt
     4561 ttctctccgt gaccgggccg tcggggtccg gcaaatcgac gttcatgcac atcatcggct
     4621 gcctcgaccg gccgacgtcg gggcagtatc tgctcgatgg ccaggacgtc tcgcgcatga
     4681 cgaaagatca gctcgcggcg attcggaaca agaagatcgg attcgtcttc cagggcttca
     4741 acctcttgac gcgcacctcg gcgctcgaca acgtggagct gccgctgctc tacggcgcca
     4801 acggcatgaa gaccgccgag cggcacaagc gggcgatgga cgtgctgaag gcggtcggcc
     4861 tggagaatcg agcggatcac cattcgaacc agctctccgg cggccagcag cagcgcgtcg
     4921 caatcgcgcg atcgctcgtc aacgagccgt cgattctgct cgccgacgag ccgaccggga
     4981 acctcgacac gcgaacgagc atcgaggtca tggagatttt ccagaagctc aatctcgaga
     5041 cgggaatcac ggtcatcctg atcacgcacg aagtggacat cgccgagtac ggcacgcgca
     5101 ccgtggcgtt tcgcgacggc gtggtcgtga cggacaagca aaacacaagg cgtcgcatgg
     5161 cgcaggacga gctggcggcg cttccggccc cgacggcgta aggagcactg atgtcggtct
     5221 tcatgatcat tcgcatcgcc ttcaaggcgc tcagccggaa caagatgcgc acggcgctga
     5281 cgatgctcgg catgatcatc ggcgtggcgg cggtcatcac gatggtggcg ctcggcacgg
     5341 gcgcccagac ctcgatcgac gcggcggttc aatcggccgg caccaacacc gtcatcgtgt
     5401 cggccggcaa cttcacgcag ggcggcgtcc gccagggcca gggcaacgcc agcacgctca
     5461 tccccgacga tgccgtcgcg atctcgcagc tgccgggcat cctctacacg gcggccggct
     5521 cgtcgacacg cgcgcagatg gtcgcgggca accagaactg gaacacgcag gcgcagggca
     5581 ccgacgtcga cctcccgctc atcaatgcgt ggccggtcga tgatggctcg ttcttcacaa
     5641 cgcaggacgt gacgcaggcc gcgaaggtgg tcgtgctggg gaccgtggtc cgcgatcagt
     5701 tgttcgggac cgacagcgag ccggtcggcc aggtgattca gatccagcac cagcccttca
     5761 ccgtcgtcgg cgtcatggcg tcgaagggcc aatcgagcat gggccaggac cgcgacgata
     5821 cggtgttcat cccctacacg acggtgatga agaagatgcg gggcgtcacc ttcatcaaca
     5881 acgtgacggt tgcggcggcc gaggccagcc aggtgacggc cgtcgccgat cggattgcga
     5941 cgctgctgcg cgtccgccac aagatcgcgc ccggcgatcc ggacgatttc atggttcgca
     6001 cgatcgaaga gatggcgagc gtccgcaagg aagcgacgca gaccatgacg gcgctcctgg
     6061 cgagcatcgc cggcgtctcg ctgctcgtcg gcggcatcgg catcatgaac atcatgctcg
     6121 tgtcggtgac cgagcggacg cgcgagatcg gcctgcgcat ggcgatcggc gcgcgcggcc
     6181 gcgacgtcct gctgcagttc ctcgtcgagg caatcgtcct gagcctgttc ggcggcggca
     6241 tcggcatcgc gctcggcttc ggcgtcgcgc aaggcgtgac gctctgg
//
LOCUS       DASVHM010000261         2204 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_596806, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000261 DASVHM010000000
VERSION     DASVHM010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_596806"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..1203
                     /locus_tag="VF308_04990"
     CDS             52..1203
                     /locus_tag="VF308_04990"
                     /inference="COORDINATES: protein motif:HMM:NF024581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEX7436041.1"
                     /translation="MSTQVSEQARATVRELSALCRQCLQCGQCIGACPNGFELELGPR
                     RVVRLILSQDVEKLLECEDVWRCSECQACTEACPMEVDVAGMMSAVRRLQMEYGGVRC
                     PERKVAEIATKRLSRKGKIDNMLFGTAMVSRGFIPSDLVATATMGVKMASGKVRRTPR
                     LTVEGTEPKPFYAGCSLQQDKEAFHATARVARELGFPLAEQAGAGCCGHGSRGEIPAK
                     LETDSAVFTVCPACDYSLQEVEIETVPVWQALVEHARREDRRLLAAAPRFVPYVGCLT
                     DRETALESLAGAAELAGAELVTSYPGLHAGCCGALGAMFRGPTEAVGNLIAFAAENEA
                     PIVTPCLLCRDNVRSAVRGAKAKVHVYFWPEFFQAATSAATTADGEADD"
     gene            1196..1876
                     /locus_tag="VF308_04995"
     CDS             1196..1876
                     /locus_tag="VF308_04995"
                     /inference="COORDINATES: protein motif:HMM:NF024581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEX7436042.1"
                     /translation="MTDEKKKTSSEKKPNPYSVIAENSFSERPTSRQELVDRIANDPR
                     MHDHKEGFESCIQCGICTSGCPAARFTDYVPREVARRALEGDPSLLEDDSVWFCFYCY
                     TCQSRCPRKNSVAVINQVVRSMQVESGYGIKHVEMFAAWGEQFYDKGMGGTPHVFFSA
                     IAEAWGPKWKEFIANRDAMREEMGLGGMYPAEAAVKEVQVIMEETGFFDRLKSVGAWQ
                     DHEPAKRE"
     gene            complement(1899..>2204)
                     /locus_tag="VF308_05000"
     CDS             complement(1899..>2204)
                     /locus_tag="VF308_05000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436043.1"
                     /translation="GDLARHVVGEAGGGTAGGAYTALDAAQEALFVVVHAGVVKDAID
                     LPVTAVFVLTMTGAAVAGIFGAAATAPLARLVIDARAIIRKHAEAEAANASGAPPPA"
BASE COUNT          356 a          748 c          776 g          324 t
ORIGIN      
        1 gtctcgagct caagcgagcg ggaagcgttc cctgcgaggg aggtgggggc tgtgtccacg
       61 caggtgtctg agcaggcgcg cgcgaccgtc cgcgagctct ccgccctatg ccggcagtgc
      121 ctgcagtgcg gtcagtgcat cggcgcctgc ccgaacggct tcgagctcga gctgggcccg
      181 cgccgggtgg tgcgactgat cctctcgcag gatgtcgaga agctgctcga gtgcgaggac
      241 gtctggcgct gcagcgagtg ccaggcctgc accgaggcct gcccgatgga ggtcgacgtg
      301 gccgggatga tgagcgcggt acgccggctg cagatggagt acggcggcgt gcgctgtccc
      361 gagcgcaagg tggccgagat cgcgaccaag cgcctttcgc gaaaaggaaa gatcgacaac
      421 atgctcttcg gcacggcgat ggtgtcgcgc ggcttcattc ccagcgacct cgtggcgacc
      481 gcgacgatgg gcgtcaagat ggctagcggc aaggtgcgtc gcacgccgcg cctgaccgtg
      541 gaaggcacgg agccgaagcc cttctacgcc ggctgctcgc tgcagcaaga caaggaggcc
      601 ttccacgcca ccgctcgtgt ggcgcgcgag ctgggcttcc cgctcgccga gcaggccggc
      661 gccggctgct gcgggcacgg ctcgcgcggg gaaatcccgg ccaagctcga gaccgacagc
      721 gcggtcttca ccgtttgccc ggcctgcgac tacagcttgc aggaagtcga gatcgagacc
      781 gtgcccgtct ggcaggcgct ggtcgagcac gctcggcgcg aggatcgtag gctgctggcc
      841 gccgcgccgc gtttcgtccc ctacgtcggc tgcctgaccg atcgcgagac ggcgctcgag
      901 tcgctggccg gtgcggccga gctcgccgga gccgagctgg tgacctccta ccccggcctg
      961 cacgcgggct gctgcggcgc gctgggcgcc atgttccgcg ggccgaccga ggcggtcggc
     1021 aacctgatcg ccttcgccgc ggagaacgag gcgccgatcg tcacgccctg cctgctctgc
     1081 cgcgacaacg tgcgctcggc cgtgcgcggc gccaaggcga aggttcacgt ctatttctgg
     1141 cccgagttct tccaggcggc cacatccgcc gcgaccactg ccgatggaga agccgatgac
     1201 tgacgagaag aagaagacga gcagcgagaa gaagccgaac ccctactcgg tcatcgccga
     1261 aaactcgttc agcgagcgcc caacgtctcg ccaggagctg gtcgaccgca tcgccaacga
     1321 cccgcgcatg cacgaccaca aggagggctt cgagagctgc atccagtgcg gcatctgcac
     1381 ctccggctgc ccggcggccc gcttcacgga ctacgtgccg cgcgaagtgg cgcgccgcgc
     1441 cctcgaaggc gacccctcgc tgctcgagga cgactccgtg tggttctgct tttactgtta
     1501 cacctgccag agtcgctgcc cgcgcaagaa cagcgtcgcc gtgatcaacc aggtggtgcg
     1561 cagcatgcag gtcgagagcg gctacggcat caagcacgtc gagatgttcg ccgcctgggg
     1621 cgagcagttc tacgacaagg gcatgggcgg cacgccgcac gtgttcttca gcgccatcgc
     1681 ggaggcttgg gggccgaagt ggaaggagtt catcgccaac cgcgacgcga tgcgcgagga
     1741 gatgggcctg ggcggtatgt acccggccga agcagcggtg aaggaagtgc aggtcatcat
     1801 ggaggagacc ggcttcttcg accgcctcaa gagcgtcggc gcctggcagg accacgagcc
     1861 ggcgaagcgc gagtagccgc tgcgccggcc cgtcgtcgtc aggccggcgg cggcgcgccg
     1921 gaggcgttcg cggcttcagc ctccgcgtgc ttgcggatga tggcgcgcgc gtcgatcacc
     1981 agccgcgcca gcggcgccgt cgccgcggcg ccgaagatgc cggccaccgc ggcgccggtc
     2041 atcgtgagca cgaacacggc ggtgaccggc aggtcgatcg catccttaac gacccccgca
     2101 tgcacgacca caaagagggc ttcctgagct gcatccagtg cggtgtatgc acctccggct
     2161 gtcccgccgc ccgcttcacc gactacgtgc cgcgcgaggt cgcc
//
LOCUS       DASVHM010000262         4928 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_451436, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000262 DASVHM010000000
VERSION     DASVHM010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4928
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451436"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1662)
                     /gene="ppsA"
                     /locus_tag="VF308_05005"
     CDS             complement(<1..1662)
                     /gene="ppsA"
                     /locus_tag="VF308_05005"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008986 - pyruvate, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HEX7436044.1"
                     /translation="MSSTHLATAFVARFDTLRMTDVEAVGGKNASLGEMISQLSESGV
                     RVPSGFATTAYAFRTFLAEGGLARRISERLASLDTDDVRALAAAGAEIRGWIQAQPLP
                     PAFEAEVRREYELLAADHPDATFAVRSSATAEDLPEASFAGQQETFLNVSGIDGVLAR
                     MREVFASLYNDRAISYRVHKGYAHGDVALSAGVQRMVRSDLGSAGVMFTIDTESGFPD
                     VVFITSSYGLGETVVQGAVNPDEFYVHKHALKSGKKAIIRRNLGSKLIKMAFASAEDR
                     AASGKLVTTLDTATEQRNRYSLSDDDVAELARYALVIEQHYGRPMDIEWGKDGIDGKL
                     YILQARPETVKSQAEGKAEQRYALKGSGTVLVEGRAIGQKIGTGPVRIVDSIADMDKV
                     QAGDVLVTDMTDPNWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGNATSVL
                     KEGALVTVACSEGDTGYVYDGLLETDVTDVDRGELPYSPVKIMMNVGNPQMAFDFAQM
                     PNSGVGLARLEFIINNNIGVHPRAILDYPNIDGDLKKAVESVARGH"
     gene            1884..2762
                     /locus_tag="VF308_05010"
     CDS             1884..2762
                     /locus_tag="VF308_05010"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018309913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, water dikinase regulatory protein"
                     /protein_id="HEX7436045.1"
                     /translation="MNEPAPSSLAGASAASAPPAPRHTVFFVSDGTGITAETFGNSIL
                     SQFAIKPRHLRRPFIDTPDKAHQVVREINHTAEHDGRKPIVFITLVNTEILSIVKEHT
                     QGLVLDMFNTFIEPLEAEFGITSNHRIGRFSDVSESQEYSDRIESINFALAHDDGQSA
                     KNLTESDVILVGVSRSGKTPTSLYLAMQHGVKAANYPLIPEDFERAKLPSTLMPFKAK
                     CFGLTIDPDRLARIRNERRPNSKYASIENCRYEVREGESMMKREGIAWLSSTHKSIEE
                     IATTILRDFRPDRLAY"
     gene            complement(2737..3192)
                     /locus_tag="VF308_05015"
     CDS             complement(2737..3192)
                     /locus_tag="VF308_05015"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX7436046.1"
                     /translation="MAADDVCTVRARISCLPEAIAFVEAFCGDRAVAGSDCLRLSLVV
                     EELFTNTVTHGHGGDSDAPVRIGLRVDPTFLELSYEDSAPPFDPLDHVARSPVDPAAD
                     VADRPVGQLGLALVVSMAERVAYVRVDGCNRVQLALRRHATINTPADPA"
     gene            3310..3720
                     /locus_tag="VF308_05020"
     CDS             3310..3720
                     /locus_tag="VF308_05020"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HEX7436047.1"
                     /translation="MLAAIGFAASARADVGQIKVATGQVSVDRKGQSLPAKVGMPLET
                     DDVLRTGADGSVGITMRDNSLLSAGPNSILSLERFEFDPTTQQGRFDARLRRGTLAVV
                     SGRIAKKTPQAMTVRTPSAVLGVRGTEFVVSVDE"
     gene            3713..4309
                     /locus_tag="VF308_05025"
     CDS             3713..4309
                     /locus_tag="VF308_05025"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEX7436048.1"
                     /translation="MNSLARSAAIVLSALLVAACATPKETVVLLPSPTGQDTAVTVTQ
                     GSRQLVLAQPYAGARLSRDTAESYPSNAQEVQSRYGLALAAQPLPPAQFTLFFVEGKD
                     EFTDESKKIVDGVFAEIAKRPIPDVIVIGHTDTVGNDAANDALSRQRAEVVRAAFAAR
                     GLAADNVVAIGRGKRELAVPTGDGVAEPRNRRVEILVR"
     gene            complement(4328..>4928)
                     /locus_tag="VF308_05030"
     CDS             complement(4328..>4928)
                     /locus_tag="VF308_05030"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HEX7436049.1"
                     /translation="GKGLSASIFMAVSKALYKGLMIRTPGADIGDIMSAANAEVSRDN
                     AEMLFVTVFAAVLDLRSGELVYCNAGHENPYRLRPGSSRPERIADGDGPPLCAMSDFE
                     YRSASCRLVAGELLCLLTDGVAEAQNAAGELYGHARAEQVLSERFQAGASARELVTAL
                     QADVVAFEDGAESHDDLTILALRWQGPRPDAAPTAAAPG"
BASE COUNT          765 a         1701 c         1689 g          773 t
ORIGIN      
        1 gtggccgcgg gcgacgcttt cgaccgcctt cttgaggtcg ccgtcgatgt tcggatagtc
       61 gaggatcgcc cgcggatgga cgccgatgtt gttgttgatg atgaactcga gcctggccag
      121 gccgacgccc gagttcggca tctgcgcgaa gtcgaacgcc atctgcggat tgccgacgtt
      181 catcatgatc ttgaccggcg agtacggcag ctcgccgcga tcgacgtcgg tgacgtcggt
      241 ctcgagcagg ccgtcgtaga cgtagccggt gtccccttcc gagcaggcga cggtgacgag
      301 cgcgccctcc ttcagcaccg aggtcgcgtt gccgcagccg accaccgccg ggatgccgag
      361 ctcgcgggcg atgatcgccg cgtggcaggt gcggccgccg cggttggtga cgatcgcgct
      421 cgcccgcttc atcaccggct cccagttcgg gtcggtcatg tcggtgacga ggacgtcgcc
      481 ggcctggacc ttgtccatgt cggcgatcga gtcgacgatc cggaccgggc cggtgccgat
      541 cttctggccg atggcgcggc cttcgacgag caccgtgccg ctgcccttca aggcatagcg
      601 ctgctcggcc ttgccctccg cctggctctt caccgtctcc ggccgcgcct gcaggatgta
      661 gagcttgccg tcgatgccgt ccttgcccca ctcgatgtcc atcggccgac cgtagtgctg
      721 ctcgatgacg agcgcgtagc gggcgagctc ggcgacgtcg tcgtcggaga gcgagtagcg
      781 gttgcgctgc tcggtcgcgg tgtcgagcgt ggtcacgagc ttgccgctcg cggcgcggtc
      841 ctcggccgag gcgaacgcca tcttgatcag cttcgagccg aggttcctgc ggatgatcgc
      901 cttcttgccg ctcttcagcg cgtgcttgtg gacgtagaac tcgtcgggat tgacggcgcc
      961 ctgcacgacg gtctcaccga ggccgtagct cgaggtgatg aagacgacgt cgggaaagcc
     1021 gctttcggtg tcgatcgtga acatcacgcc ggccgagccg aggtcgcttc gcaccatgcg
     1081 ctggacgccc gccgagagcg cgacgtcgcc gtgcgcgtag cccttgtgga cgcgatagct
     1141 gatggcgcgg tcgttgtaga ggctggcgaa gacctcgcgc atgcgcgcca gcacgccgtc
     1201 gatgccggag acgttcagga aggtctcctg ctggccggcg aacgaggcct cgggcaggtc
     1261 ttcggcggtc gccgacgagc gcaccgcgaa ggtcgcgtcg gggtggtcgg cggcgaggag
     1321 ctcgtactcg cgccgcacct cggcctcgaa cgctggcggc agcggctgcg cctgaatcca
     1381 gccacggatc tcggcaccgg cggcggcgag cgcgcgcacg tcgtcggtgt cgagcgaggc
     1441 gagccgctcc gagatgcggc gcgccaggcc gccttcggcg aggaaggtgc ggaacgcgta
     1501 cgccgtcgtc gcgaagccgc tcggcacgcg gacgccggac tcgctcaact ggctgatcat
     1561 ttcgccgagg gatgcgttct tgccgccgac cgcctcgacg tcagtcattc tcagggtgtc
     1621 gaagcgggcg acgaaggcgg tcgccaggtg ggtggatgac atgggaagac tcggggctcg
     1681 tgaaaaaccg gcgtcttccg acccgtgact gcgcagtggg cgtcgcgcgg ccttcgatcg
     1741 caagcccgcg gccagcaccg gcccgagggg cggtgggcga agcggcgggg gcgagaggcg
     1801 ggggcgagca tgcgcgggtc gaaaacgtcc cgattctaag agcggcgcgt cgatcaggcg
     1861 gagcggctgc ctatcatcgg gcgatgaacg aacccgcgcc ctcctccctt gccggcgctt
     1921 cggccgcctc ggccccgcct gcacctcgcc acacggtgtt cttcgtctcc gacggcaccg
     1981 gcatcacggc cgagaccttc ggcaactcga tcctgtcgca gttcgcgatc aagccgcgcc
     2041 acctgcgccg cccgttcatc gacacgcccg acaaggcgca ccaggtcgtc cgcgagatca
     2101 accacaccgc cgagcacgac ggcaggaagc ccatcgtctt catcaccctg gtgaacaccg
     2161 agatcctgtc gatcgtcaag gagcacaccc agggcctcgt cctcgacatg ttcaacacct
     2221 tcatcgagcc gctcgaggcc gagttcggga tcacctcgaa ccaccgcatc ggccggtttt
     2281 ccgacgtctc cgagagccag gaatacagcg accgcatcga gtcgatcaac ttcgcgctcg
     2341 cccacgacga tggccagtcg gcgaagaacc tcaccgagtc cgacgtcatc ctggtcggcg
     2401 tcagccggag tggcaagacg cccacctcgc tctaccttgc catgcagcac ggcgtcaagg
     2461 ccgccaacta cccgctgatc ccggaggatt tcgagcgcgc caagctgccg tcgacgctga
     2521 tgccgttcaa ggccaagtgc ttcggcctga cgatcgaccc cgaccggctg gcccgcatcc
     2581 gcaacgaacg ccggccgaac agcaagtacg cttcgatcga gaactgccgc tacgaggtgc
     2641 gcgagggcga atcgatgatg aagcgcgaag gcatcgcctg gctgtcgtcg acgcacaagt
     2701 cgatcgagga gatcgcgacg acgatcctgc gcgatttcag gccggatcgg ctggcgtatt
     2761 gatcgtggcg tgccggcgca gggcgagctg cacccggttg cagccgtcca cgcgcacata
     2821 agcgacgcgc tcggccatgc tgaccaccag cgcgaggccg agctgcccga cgggccggtc
     2881 ggcgacgtcg gccgccgggt cgaccggcga tcgggcgaca tggtcgagcg gatcgaaagg
     2941 cggcgcgctg tcctcgtacg acagctcgag aaaggtcgga tcgacgcgca acccgatccg
     3001 caccggcgca tcgctgtcgc cgccgtggcc gtgcgtcacg gtgttggtga acagctcctc
     3061 gaccaccagc gagagacgca ggcagtcgct gccggcaacg gcgcgatcgc cgcagaacgc
     3121 ctcgacgaat gcaatcgcct cgggcaggca gctgatgcgg gcgcggacgg tgcagacgtc
     3181 atcggcggcc atcgtcacgc gcctcgaaca gaggtaagct cgctcgtctt cacgctcagc
     3241 agaacgatct cggggacaag catgatgacc agaacgcttc cgcgccggct cggccgcgcc
     3301 ctgcttgtcg tgctggcggc gatcgggttc gccgcttccg cgcgcgccga cgtgggccag
     3361 atcaaggtcg ccacgggaca ggtgtccgtc gatcgcaagg ggcaatcgct gccggcgaag
     3421 gtcggcatgc cgctcgagac cgacgacgtg ctgaggacgg gcgccgatgg ctcggtgggc
     3481 atcaccatgc gggacaactc cctgctgtcg gccggcccga acagcatcct gtcattggaa
     3541 cgcttcgagt tcgatcccac gacccaacaa ggccgcttcg atgcgcggct tcggcgcggc
     3601 acgctggccg tcgtctcggg ccgcatcgcc aagaagacgc cgcaggcgat gacggtgcgg
     3661 acgccctcgg cggtgctggg cgtgcgcggc acggagttcg tcgtgtcggt cgatgaatag
     3721 cctggcgcgc agcgcggcga tcgtcttgtc ggcgctgctg gtcgccgcct gcgcgacgcc
     3781 gaaggagacg gtcgtgctgc tgcccagccc caccggacag gataccgcgg tgacggtgac
     3841 gcaaggttcg cggcagctcg ttctcgccca gccctacgcc ggcgcgcggc tgagccgcga
     3901 cactgccgag tcgtaccctt cgaacgcgca ggaagtccag tcccgctacg gcctcgcgct
     3961 cgcggcgcag cccttgcctc cggctcagtt cacgctcttc ttcgtcgaag gcaaggacga
     4021 gttcaccgac gaatcgaaga agatcgtcga cggcgtcttt gccgagatcg ccaagcggcc
     4081 gatccccgac gtgatcgtca tcggccacac cgacacggtc ggcaacgacg ccgccaacga
     4141 cgccctctcg cgccagcgcg ccgaggtcgt tcgcgctgcg ttcgccgcgc gcggcctggc
     4201 ggccgacaac gtggtcgcca tcggccgcgg caagcgcgag ctggcggtgc ccaccggcga
     4261 cggcgtcgcc gagccccgca atcgtcgcgt cgagatcctg gtccgctgag gccatgcgca
     4321 tctcctccta gccgggcgcg gccgccgtcg gcgccgcgtc gggtcgcggc ccctgccagc
     4381 gaagcgccag gatcgtcagg tcgtcgtgcg actcggcgcc gtcctcgaag gccacgacgt
     4441 cggcctgcag cgccgtcacc agctcgcggg cgctggcgcc ggcttggaag cgctcgctga
     4501 gcacctgctc cgcccgggcg tggccgtaga gctcgccggc ggcgttctgc gcttcggcga
     4561 ccccgtcggt cagcaagcac agcagctccc cagctacgag ccggcagctc gcgctgcggt
     4621 attcgaagtc gctcattgcg cacagcggcg ggccgtcgcc gtcggcgatg cgctcgggcc
     4681 gtgaactgcc gggccgcagc cgataagggt tctcgtggcc ggcattgcaa tagacgagct
     4741 cgccgctgcg caggtccagg acggcggcga acacggtgac gaagagcatc tcggcgttgt
     4801 cgcgcgacac ctcggcgttg gccgcgctca tgatgtcgcc gatgtcggcg ccgggcgtgc
     4861 ggatcatcag ccccttgtag agcgccttgc tcacggccat gaagatcgat gccgaaagtc
     4921 ccttgccg
//
LOCUS       DASVHM010000263         6248 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_306391, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000263 DASVHM010000000
VERSION     DASVHM010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6248
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306391"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            170..1498
                     /locus_tag="VF308_05035"
     CDS             170..1498
                     /locus_tag="VF308_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011463325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436050.1"
                     /translation="MEAIVQKRNQGPAAKRRTGGLAVSLVALGLASGAQAQETYKLGI
                     VSFLSGQAAESFGIPAVNGAKVVIEAFNAGTAPAPYNKVGFGGIKIEPVYVDENGGAT
                     KQVQELRNLYDREKVDAVVGYVGSGDCLAVAPVAEEMKKFLILYDCGTPRIFEDGKYA
                     YVFRTASHATMDNVALARYLKAHNVKADTFNMINQDYAWGQDSRKDFVLSMEKLYPSA
                     KPGEDLLPKFGAGQYGTEISALMAKPADVTHSSLWGGDLQAFVLQSGPRGLFKRTQVV
                     LSAADHVLPGLGDKMPDGTILGARGAYGLMAPKSALNDWWWGIYQKAYNVYPVQAPYR
                     MVQSLLGLKLAVEKAMAANGGKRPTPEQLAAALAGLEWDSPAGRIRMALGDGHQAVQD
                     TAIGKTRYDAGRKMVVLDDIQRFAAECVNPPATMKSEDWIKAGFPGAKCN"
     gene            1610..2506
                     /locus_tag="VF308_05040"
     CDS             1610..2506
                     /locus_tag="VF308_05040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018904388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436051.1"
                     /translation="MNLALTILIDGLTYASWLFIVALGLTLVFGVLKILNIAHGSFYA
                     LGAYAAASFVGWFGALKFAPGWSIVAMLLAAVAVAALVAPLTERGLLRFFYGRDEVLL
                     VLVTYAMFLILEDVTKLIWGTNPYYVSAPYSLFGNVEIGPQVYVGYDFILVALALVVG
                     TAVWWGLNRTRQGKIVLAVIHSEEVAASMGVNVSRVYMLAFSVGIFLAAIGGAFTAPM
                     ISVAPGISVGVIIVSFAVVIIGGLGSIEGAAIGALIVGLARSLAVHLAPVAELFSIYI
                     VMALVLMVRPEGLFQQTQARKI"
     gene            2515..3522
                     /locus_tag="VF308_05045"
     CDS             2515..3522
                     /locus_tag="VF308_05045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011463327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436052.1"
                     /translation="MSLSLSTAMPAVPGRDQGAPRRFLLGGIAFTAALLVAGAFMPKW
                     LTFLITMAASHGLVSLGIVLMMRGGVVSFGQGLVFALGAYAAALAYTRLGLTDAIGLA
                     LLGGAAATLVAAPFAPLLSRYRGIFFAMLTLALSMVVFGVLVKTESLGGSDGFNMGRV
                     TVLGQKLADAHVGYILYCVTLVIAAALALLARVYFDSTRGLITLAVRENELRVEYLGG
                     SVRRAMAINFVLAAFAGGAGGALTVMSLGHIDPNFSYWTTSGEFVFVAILAGWQSVLA
                     VFIASTVLEVVRSFSSLYFPNTWQLSLGLFLLFVIRFLPRGIGSLWFERPGSGRSGGA
                     R"
     gene            3519..4280
                     /locus_tag="VF308_05050"
     CDS             3519..4280
                     /locus_tag="VF308_05050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436053.1"
                     /translation="MSTPLLRATGLEKRFGALVAANAITLDVQTGERVSLIGSNGAGK
                     TTFVNMITGYLKPDAGRIELAGRDITPLAPRAITRLGVARSFQIPQLYPALTVLDNML
                     VATACQENRLSFWQVARRADAVERADALLERFQLVEHRERLVAELPGGVRKLLDIAMA
                     LTGEPQLLLLDEPTSGVSAEEKFPMMEIIMTAIGAQPLTVLFVEHDMDIVERYADRVI
                     AFYSGRIIADDAPEAALATDDVRRYVTGTLGALAC"
     gene            4274..4936
                     /locus_tag="VF308_05055"
     CDS             4274..4936
                     /locus_tag="VF308_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7436054.1"
                     /translation="MLSVESLHVAIQSVQVLRGLALSVADSTMVGLVGRNGAGKTTLM
                     RSVMGHLPVARGRITFEGQDLAGLPKHARAALGIGYMPEDRGLVPSLSVEENILVPIW
                     ASRTLRAAERLDFVYSVLPELKEMRERRALLLSGGQQKMVALARALAVGTRLLLLDEP
                     FEGLAPALSSRLAEVIGGFRGGRLSVLIAQSDLNHSRSLVDAEVVIERGANVAPAAQP
                     TA"
     gene            4960..>6248
                     /locus_tag="VF308_05060"
     CDS             4960..>6248
                     /locus_tag="VF308_05060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEX7436055.1"
                     /translation="MNPWQDLPMPAIRHEALAGDRLVKCFAERPSSFHALFARAVAER
                     GDHDAVACDGRRWSYREADAEVARIASGLALLGLARRDRTAMLIGNRPEFVFVLFALQ
                     RLGAIAVPIGVREQRPGLAFILNQCGASAIVFDAGLADRVPGAAEVPSLRSRIAVGAA
                     AGAHTLEELRAAGDAPAAPVADVREQDTAVILYTSGTTGQPKGAMLTHLNIAHSVLHY
                     ATCMRLGPDDRSALAVPASHVTGLIATIASMAHVGGAVVIVPEFKAADFIRVVEEERI
                     THTLMVPAMYNLCLLAPDFGTRDLARWRVGGYGGAPMPIATIDALARRLPNLALVNAY
                     GATETTSPTTMMPAGLTRDHADTVGVALPCAEVLVMDDCGREVASGEVGELWIGGPMV
                     VPGYWDNPEATAASFTAGFWHSGDLGSVDGTGFVRIV"
BASE COUNT          912 a         2187 c         2138 g         1011 t
ORIGIN      
        1 ccacgcccca gccgggcgat gtgcccgtca accagctgca gcacgacggc acgctgtgga
       61 actggtgaca agccctactg caaaagacgg gggctttcgc ataatcaatc gcccggcccg
      121 tgccggcccc ggacggctcg cacgtcccga atccaacaag gagacaagca tggaagcgat
      181 cgtccagaaa cggaaccagg gcccggcggc gaagcgtcgc acgggaggcc tcgccgtgag
      241 cctcgtggcg ctcggtcttg cgtcaggtgc gcaggcgcag gagacctaca agctcggcat
      301 cgtcagcttc ctgtcgggcc aggctgcgga gagcttcggc attccggccg tcaacggcgc
      361 caaggtcgtg atcgaggcct tcaacgccgg caccgcgccg gcgccgtaca acaaggtcgg
      421 cttcggcggc atcaagatcg agccggtcta cgtcgacgag aacggcggcg cgaccaagca
      481 ggtgcaggag ctgcgtaacc tctacgaccg cgagaaggtg gatgcggtgg tcggctatgt
      541 cggctcgggc gactgcctcg cggtcgcgcc ggtcgccgag gagatgaaga agttcctgat
      601 cctctacgac tgcggcacgc cgcgaatctt cgaggacggc aagtacgcgt atgtgttccg
      661 caccgcctcg cacgcgacga tggacaacgt ggcgctcgcc cgctacctga aggcgcacaa
      721 cgtcaaggcc gacaccttca acatgatcaa ccaggactac gcctggggcc aggattcgcg
      781 caaggacttc gtgctgtcga tggaaaagct ctatccgtcg gccaagcccg gcgaagacct
      841 gctgcccaag ttcggcgccg gccagtacgg caccgagatc tcggcgctga tggccaagcc
      901 cgccgacgtc acgcactcga gcctgtgggg cggcgacctg caggccttcg tcctgcagtc
      961 ggggccgcgc ggcctcttca agcgcaccca ggtcgtgctc tcggcggccg accacgtgtt
     1021 gccgggactc ggcgacaaga tgcccgacgg cacgatcctc ggcgcgcgcg gcgcctacgg
     1081 gctgatggcg ccgaagtcgg cgctgaacga ctggtggtgg gggatctacc agaaggccta
     1141 caacgtgtac ccggtgcagg cgccgtaccg catggtgcag tcgctgctcg gcctgaagct
     1201 cgcggtcgag aaggcgatgg ccgccaacgg cggcaagagg cccacgcccg agcaactggc
     1261 cgcggccctg gcaggtctcg agtgggactc gcccgccggg cgcatccgca tggcgctcgg
     1321 cgacggccac caggcggtgc aggacacggc gatcggcaag acccgctacg acgcgggcag
     1381 gaagatggtc gtgctcgacg acatccagcg ctttgcggcc gagtgcgtga acccgccggc
     1441 gaccatgaag tcggaagact ggatcaaggc gggcttcccg ggtgcgaagt gcaattgaag
     1501 gtcgttgaca tggccggcgc gacgtgtcgt ccccgcgaag ggcctgcccg cggctcggac
     1561 ggggacccat cgcacgatgg attcccgcct ccgcgggaat gacgatgcgg tgaacctcgc
     1621 cctcacgatc ctgatcgacg gcctgacgta cgcgtcctgg cttttcatcg tcgcgctcgg
     1681 cctgacgctg gtgttcgggg tgctgaagat cctcaacatc gcgcacggca gcttctacgc
     1741 gctcggcgcc tatgccgcgg cgagcttcgt cggctggttc ggggcgttga agttcgcgcc
     1801 gggctggtcg atcgtcgcga tgctgctcgc cgcggtggcg gtcgcggcgc tggtcgcgcc
     1861 gctcaccgag cgcggcctgc tgcgcttctt ctacggtcgc gacgaggtcc tgctcgtgct
     1921 cgtgacctac gcgatgttcc tgatcctcga agacgtgacc aagctcatct ggggcacgaa
     1981 cccgtactac gtctcggccc cgtacagcct gttcggcaat gtcgagatcg gcccgcaggt
     2041 ctacgtcggc tacgacttca tcctggttgc gctcgcgctg gtggtcggta cggcggtctg
     2101 gtggggcctg aaccgcacgc gccagggcaa gatcgtgctc gcggtgatcc acagcgagga
     2161 agtcgccgcg agcatgggcg tcaacgtgtc gcgggtctac atgctcgcgt tttcggtcgg
     2221 catcttcctc gcagcgatcg gcggcgcgtt caccgcaccg atgatctcgg tggcgccggg
     2281 catctcggtc ggcgtcatca tcgtctcgtt cgcggtcgtg atcatcggcg gcctcggcag
     2341 catcgagggc gccgcgatcg gcgccctcat cgtcggcctg gcacgctcgc tcgcggtgca
     2401 cctcgctccg gtggccgaac tgttctcgat ctacatcgtg atggcgctgg tgctgatggt
     2461 ccggcccgag ggcctgttcc agcagacgca ggcgcgcaag atctaggccc cggaatgagc
     2521 ctctcgctgt cgacggcgat gcccgcggtc cccggtcgcg accaaggcgc gccacggcgc
     2581 ttcctgctcg gcggcatcgc cttcaccgcg gcgctgctcg tcgcaggtgc gttcatgccg
     2641 aagtggctga cgttcctgat cacgatggcg gcctcgcatg ggctcgtctc gctcggcatc
     2701 gtcctgatga tgcgcggcgg ggtcgtctcg ttcggccagg ggctcgtgtt cgcgctcggc
     2761 gcctatgccg ccgcgctcgc ttacacccgc ctgggtctca ccgacgcgat cggtctggcc
     2821 ctcctcggcg gcgccgcggc aacgctcgtc gcggccccgt tcgcgccgct gctctcgcgc
     2881 tatcgcggca tcttcttcgc gatgctgacg ctggcgctgt cgatggtggt cttcggcgtc
     2941 ctcgtcaaga ccgaatcgct cggcggctcg gacggcttca acatgggccg cgtgaccgtg
     3001 ctcggccaga agctcgccga tgcgcacgtc ggctacatcc tctactgcgt gacgctcgtc
     3061 atcgcggcgg cgctggcgct gctcgcgcgc gtctatttcg actcgacccg gggcctgatc
     3121 acgctcgcgg tgcgcgagaa cgagctgcgc gtcgaatacc tcggcggctc ggtgcgccgc
     3181 gcgatggcga tcaacttcgt gctcgcggcc ttcgccggcg gtgcgggcgg tgcgctgacc
     3241 gtgatgtcgc tcggccacat cgacccgaac ttcagctact ggacgacctc gggcgagttc
     3301 gtcttcgtcg cgatcctcgc cggctggcaa agcgtgctcg cggtcttcat cgcgtcgacg
     3361 gtgctggagg tcgtgcgttc gttctcgagc ctctatttcc cgaacacctg gcagctctcg
     3421 ctcggcctct tcctgctctt cgtgatccgc ttcctgccgc gcggcatcgg ctcgctctgg
     3481 ttcgaacgcc ccgggtcggg gcgcagcggc ggagcccgat gagcaccccg ctgctgcgcg
     3541 caacggggct cgagaagcgc ttcggtgcgc tcgtcgccgc gaatgcgatc acgctcgacg
     3601 tgcagacggg cgaacgagtc agcctgatcg gcagcaacgg ggccggcaag accacgttcg
     3661 tgaacatgat caccggctac ctcaagcccg acgccggccg catcgaactc gcggggcgcg
     3721 acatcacccc gctcgcgccg cgcgccatca cccggctcgg cgtcgcgcgt tcgttccaga
     3781 ttccccagct ctaccccgca ctgacggtgc tcgacaacat gctggtcgcg acggcctgcc
     3841 aggaaaaccg gctctcgttc tggcaggtcg cgcgccgcgc cgacgcggtc gagcgggccg
     3901 acgcgctgct cgagcgcttc cagcttgtcg agcaccgcga gcgcctcgtc gccgaactgc
     3961 cgggcggcgt gcgcaagctc ctcgacatcg cgatggcgct gaccggagaa ccgcagctgc
     4021 tgctcctcga cgagccgacg agcggggtct cggccgaaga gaagttcccg atgatggaga
     4081 tcatcatgac cgccatcggc gcgcagccgc tgacggtgct gttcgtcgaa cacgacatgg
     4141 acatcgtcga acgctacgcc gaccgcgtga tcgcgttcta cagcgggcgc atcatcgccg
     4201 acgacgctcc cgaagcagcg ctcgcgaccg acgacgtgcg ccgctacgtg accggcacgc
     4261 tcggagctct cgcatgctga gcgtcgaatc gctgcacgtg gcgatccagt cggtgcaggt
     4321 cctgcgcggc ctggccctga gcgtggccga cagcacgatg gtcggcctgg tcggccgcaa
     4381 cggcgccggc aagacgacgc tgatgcgctc ggtgatggga cacctgccgg tcgcccgggg
     4441 ccggatcacg ttcgagggcc aggatctcgc cggcctgccg aagcacgcgc gagcggcact
     4501 cggcatcggc tacatgccgg aagaccgcgg cctggtgccg agcctgagcg tcgaggaaaa
     4561 catcctcgtg ccgatctggg catcgcgcac gctccgagcg gccgagcgcc tcgacttcgt
     4621 ctacagcgtc ctgcccgaat tgaaggagat gcgcgagcgt cgcgcgctgc tgctctccgg
     4681 tggccagcag aagatggtcg cgctggcgcg cgcgctcgcg gtcggcacgc gcctcctcct
     4741 gctcgacgag ccgttcgaag ggctcgcgcc ggccctctcg agccgcctcg ccgaggtcat
     4801 cggcggcttc cggggcggcc ggctctcggt gctgatcgcc cagtcggacc tgaaccattc
     4861 gcgcagcctc gtcgacgcag aggtcgtgat cgaacgcggc gccaacgtcg ccccggcggc
     4921 gcagccgacg gcctagcagc tcacgatcaa ccgacgcaga tgaatccctg gcaagacctc
     4981 ccgatgccgg cgatccggca cgaagcgctc gccggcgacc ggctggtgaa gtgtttcgcc
     5041 gaacgccctt ccagcttcca cgcgctgttt gcgcgtgccg tcgccgagcg aggcgaccac
     5101 gacgcagtgg cctgcgacgg ccggcgctgg agctaccggg aggccgatgc cgaggtcgcg
     5161 cgcatcgcct cagggcttgc cctgctcggc ctcgcgcgca gggaccgaac cgcgatgctg
     5221 atcggcaacc ggcccgagtt cgtgttcgtg ctgttcgccc tgcaacgcct cggcgcgatc
     5281 gcggtgccga tcggcgtgcg cgagcagcgg cccggcctcg cgttcatcct gaatcaatgc
     5341 ggcgcgagcg cgatcgtgtt cgatgccggc ttggccgatc gcgtccccgg cgcggcagaa
     5401 gtgccctcgc tgcgctcgcg catcgcggtc ggcgcggccg caggcgcgca cacgctggag
     5461 gagcttcggg ccgcaggcga tgcccccgcg gccccggtgg ccgacgtgcg cgagcaggac
     5521 accgcggtga tcctgtacac ctcaggcacc accgggcagc cgaagggcgc gatgctgacg
     5581 cacctcaaca tcgcccattc cgtgctgcac tacgcaacct gcatgcgcct cggacccgac
     5641 gaccgctcgg cgctggcggt gccggcgagc cacgtgaccg ggctgatcgc gacgatcgcc
     5701 tcgatggccc atgtcggcgg cgcggtcgtc atcgtgcccg agttcaaggc ggccgacttc
     5761 atccgggtcg tcgaggagga acgcatcacg cacacgctga tggtgccggc gatgtacaac
     5821 ctgtgcctgc tcgcgcccga cttcggcacg cgcgatctcg cgcgctggcg cgtcggcggc
     5881 tacggcggcg cgccgatgcc gatcgccacg atcgacgccc tggcgcgccg gctgccgaat
     5941 ctcgcgctcg tcaacgccta cggcgcgacc gagacgacct cgccgacgac gatgatgccc
     6001 gcgggcctca cccgcgacca tgccgacacg gtcggcgtgg cgctgccgtg cgccgaggtc
     6061 ctggtgatgg acgactgcgg ccgtgaagtg gcgagcggcg aggtcggcga gctgtggatc
     6121 ggcgggccga tggtggtgcc cggctactgg gacaacccgg aggcgaccgc ggcttcgttc
     6181 acggccgggt tctggcactc cggcgacctc gggtcggtcg acggcaccgg gttcgtgcgc
     6241 atcgtcga
//
LOCUS       DASVHM010000264         1908 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1319035, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000264 DASVHM010000000
VERSION     DASVHM010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1908
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1319035"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..412
                     /locus_tag="VF308_05065"
     CDS             <1..412
                     /locus_tag="VF308_05065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-hydroxychromene-2-carboxylate isomerase"
                     /protein_id="HEX7436056.1"
                     /translation="LDFERSARYAGVPLKMPEKFPIPTQNAARIFWWLQARGDLTASH
                     WARHCLRAYFARGVDLSDTAALKSLCAEFGLDPAEAEAVWNDPQWKARLKAANDAAIA
                     LGVFGAPFFIVDGEPFWGNDRRPQIERWLEKGPF"
     gene            461..1018
                     /locus_tag="VF308_05070"
     CDS             461..1018
                     /locus_tag="VF308_05070"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEX7436057.1"
                     /translation="MLLADHLRTCARANRLANHRLHVALASLAAAEFEAPRVGFFPSL
                     AATLNHILAVDIYYLAALHGEADMVAQYDAFVPCRDVAELASRQRLADERVIGFAQRL
                     DEAGVMAEIVMDRGATRQVDRAAHVLAHLFMHQTHHRGQAHAMLSGTAVAPPQLDEFL
                     MPSDAPLRAADMRSLGWTERDLFGA"
     gene            1041..>1908
                     /locus_tag="VF308_05075"
     CDS             1041..>1908
                     /locus_tag="VF308_05075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEX7436058.1"
                     /translation="MPALASKLVPRSEDFKANAAAMRALVDDLNARLNQVAHGGGDAA
                     RAKHVARGKLLPRDRVEMLLDPDTPFLDIAPLAALGMYPEKDGRDAAPGAGLIAGIGR
                     VSGVECMIVCNDPTVKGGTYYPMTVKKHLRAQEIAQQNRLPCIYLVDSGGANLPNQDD
                     VFPDREHFGRIFFNQANMSAQGIAQIAVVMGSCTAGGAYMPAMSDESIIVKNQGTIFL
                     AGPPLVKAAIGEVVSAEDLGGGDVHTRLSGVADHLAQNDTHALALARAAVANLNWRKA
                     HGMQCTPSRPPLY"
BASE COUNT          300 a          685 c          638 g          285 t
ORIGIN      
        1 gctcgatttc gaacgctcgg cgcgctacgc cggcgtgccg ctgaagatgc ccgagaagtt
       61 tccgatcccg acgcagaacg cggcgcgcat cttctggtgg ttgcaggccc gtggcgacct
      121 cactgcgagc cattgggcac ggcattgcct gcgcgcctat ttcgcgcgcg gcgtggactt
      181 gagcgacacc gctgcgctga agtcgctgtg cgccgagttc ggcctcgatc ccgcggaggc
      241 cgaggcggtc tggaacgacc cgcaatggaa ggcgcgcctg aaggcggcca acgacgcggc
      301 gatcgcgctg ggcgtcttcg gcgcgccgtt cttcatcgtc gacggcgagc cgttctgggg
      361 taacgaccgg cgcccgcaga tcgagcgctg gctcgagaag gggccgttct gatgctgcgc
      421 gcaaagcgcc atctgccgcg gcccgggaag ggctgacgcg gtgctcctgg ccgatcacct
      481 gcggacctgc gcgcgcgcga accggctcgc caaccatcgg ctgcacgtcg ccctggcgag
      541 cttggcggcg gccgaattcg aggcgcctcg cgtcggcttc ttcccgagcc tcgcggcgac
      601 gctgaaccac atcctcgcgg tcgacatcta ctatctcgcg gcgctgcacg gcgaagccga
      661 catggtggcg caatacgacg ccttcgtgcc ttgccgcgac gtcgcggaac tcgcctcgcg
      721 acaacggctc gccgacgagc gcgtgatcgg tttcgcccag agactggacg aagccggcgt
      781 catggccgaa atcgtgatgg atcgcggtgc gacccggcag gtcgaccgcg cggcccatgt
      841 gctcgcccac ctcttcatgc accagaccca ccatcgaggc caggcccatg cgatgctctc
      901 gggcactgcg gtcgcgccgc cgcaactcga cgaattcctg atgcccagtg acgcgccgct
      961 gcgcgcggcc gacatgcgct cgctcggctg gaccgagcgc gatctgttcg gcgcctgagc
     1021 gccgcccccg gaaaggaccc atgcctgcac ttgcctccaa gctcgtcccg cgctccgaag
     1081 acttcaaggc caatgccgcg gcgatgcgcg ccctcgtcga cgatctcaac gccaggctga
     1141 accaggtggc ccacggcggc ggcgatgctg cgcgtgccaa gcacgtggcg cgcggcaagc
     1201 tgttgccgcg cgaccgggtc gagatgctgc tcgatcccga cacgccgttt ctcgacatcg
     1261 cgccgctcgc cgcgctcggc atgtacccgg aaaaggacgg tcgcgacgcc gcgccgggcg
     1321 cgggcctcat cgcgggcatc ggccgcgtgt cgggcgtcga atgcatgatc gtctgcaacg
     1381 acccgaccgt gaagggcggc acctactatc cgatgacggt gaagaagcac ctgcgcgcgc
     1441 aggagatcgc gcagcagaac cggctgccct gcatctacct cgtcgacagc ggcggcgcca
     1501 acctgccgaa ccaggacgac gtgtttcccg atcgcgagca cttcggccgc atcttcttca
     1561 accaggccaa catgagcgcg cagggcatcg cccagatcgc cgtggtgatg ggctcgtgca
     1621 cggcgggcgg cgcctatatg ccggcgatga gcgacgagtc gatcatcgtc aagaaccagg
     1681 gcacgatctt cctggccggc ccgccgctcg tgaaggcggc gatcggcgag gttgtgagcg
     1741 cggaggacct cggcggcggc gacgtccaca cgcgcctttc gggcgtggcc gaccatctgg
     1801 cccagaacga cacccatgcg ctcgcgctcg cccgcgccgc ggtcgcgaac ctgaactggc
     1861 gcaaggcgca cggcatgcaa tgcaccccat cgcgcccgcc gctctacg
//
LOCUS       DASVHM010000265         4025 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_162742, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000265 DASVHM010000000
VERSION     DASVHM010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4025
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162742"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(293..1177)
                     /locus_tag="VF308_05080"
     CDS             complement(293..1177)
                     /locus_tag="VF308_05080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007829270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEX7436059.1"
                     /translation="MPIRYDITHTTVYRYRQPVTFGEHRVMFRPRDSHDLRVLATDLE
                     VTPDCDVRMIQDPHSNSIALVQPLEPADEFRIVCSFTIEHAQTYNLELPLAPSAELFP
                     FAYSVDERFDLEHYLRPAHDDLGGELTAWARQFIRTDGPTSTREMLITMNQHIRENFR
                     YTARDEEGTQDPNLTLELGSGSCRDFALLMMEAGRRLGIATRFVSGYLYDPALDGGAS
                     SGTLGAGYTHAWLQAYLPGAGWVPFDPTNNLLGGSELIRVGVARHPSQAAPISGSWYG
                     ESDDYLGMSVKVSVERRK"
     gene            complement(1199..1546)
                     /locus_tag="VF308_05085"
     CDS             complement(1199..1546)
                     /locus_tag="VF308_05085"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020204589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX7436060.1"
                     /translation="MNTTDSGLQYDDTVLGSGELAESGQSVSVHYTGWVYEDGVKGAK
                     FDSSKDRNDPFSFELGAGRVIRGWDEGVQGMRVGGTRVLVIPPALGYGARGAGGVIPP
                     NATLMFEVELLDL"
     gene            complement(1612..2535)
                     /gene="gluQRS"
                     /locus_tag="VF308_05090"
     CDS             complement(1612..2535)
                     /gene="gluQRS"
                     /locus_tag="VF308_05090"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009518957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HEX7436061.1"
                     /translation="MGYIGRFAPSPTGPLHAGSLVAALASWLDARAHGGRWLVRIEDV
                     DSPRSVAEAAETILRQLAACGLLPDETPVWQSRREPVYAAALARLVAGGWAYPCGCSR
                     RDLAEAASRRGDAPARHDELVYPGTCRNGLHGKAARALRVLAAPTVDAPDSPLIVDWT
                     DRRLGPQRQDVSREVGDFVVRRADGLWAYQLAVVADDAAQGVTHIVRGEDLADNTARQ
                     IHLQRLLRFERPAYLHVPLVRAADGAKLSKQNGALPLDTARPLEALEAAGTLLALRAD
                     AADVPGWLAQATAQWRSRWLATARPPGPFGT"
     gene            complement(2566..3609)
                     /locus_tag="VF308_05095"
     CDS             complement(2566..3609)
                     /locus_tag="VF308_05095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008906290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX7436062.1"
                     /translation="MVQNRNVLTPEALTMMDVIARTGSFAAAARQLGKVPSSLTYSVR
                     QLEDALDVLLFDRRSRQARLTAAGEELLSEGRHLLEQMDAVANRVKRVATGWEAQLSV
                     AVDGVISRVTILELCEAFYALDPQAAKTAQPASDRMTTGAGGPGTRLRLRTEVMTGTW
                     EALVTGQADLAIGVGMGRESIPGVQMKEIGTMAFVFAVAPHHPLAAATGPISDTELMR
                     HRAVAVADSAQRLTPHTINLLPGQDVLTVSSLQIKLEVQLRCLACGFVPEPMAREHIG
                     AGRLVVKQVQRAAQRALLGYAWRLPGGAAAGAARKPQLGLALRWWLDQLESPATRKAL
                     LERHGSPFSTSVL"
     gene            3704..>4025
                     /locus_tag="VF308_05100"
     CDS             3704..>4025
                     /locus_tag="VF308_05100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015913315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEX7436063.1"
                     /translation="MLMLRKSNDRGFADHGWLKSFHSFSFADYHDPKHMGFGNLRVIN
                     EDRIAPGTGFGTHGHRDMEIVSYVLAGELAHKDSMGNGQAGAAVSGVIRPGDVQRMSA
                     GRGVM"
BASE COUNT          596 a         1368 c         1452 g          609 t
ORIGIN      
        1 ccgttcgtgc ggcgcggcga ggcgggaccg acacgcgagc gcggcccgtt cgagcgcgac
       61 ccgggtgggc gtgtcgagcc gcgcgccgcg caggccgagg tccgtcgcag ccccttcgat
      121 cgtgcgccgg cgaccggccg attcgatcac cagcccgccg gcttcgcgcc gcgccgggcg
      181 ggtgcgcctg cccgcaagga cggcttcaag ccgccgcgcg cgcggccggg tggattcggt
      241 cgctgagcgc ctcgagccag cccgtcagga gacccgcgcc acgcgggtct ttttacttgc
      301 ggcgctcgac cgagaccttg accgacatgc ccaggtagtc gtcgctttcg ccgtaccagc
      361 tccccgatat cggcgcggcc tgcgacggat ggcgcgcgac gccgacgcgg atcaactcac
      421 tgccgccgag caggttgttg gtcggatcga aaggtaccca gcccgcgccg ggcagatagg
      481 cctgcagcca tgcgtgggtg tagccggcgc cgagcgtgcc gctgctcgcg ccgccatcga
      541 gcgccgggtc gtagagatag cctgagacga agcgggtggc gatgccgagg cggcgcccgg
      601 cttccatcat cagcagcgcg aagtcgcggc atgatcccga gccgagttcg agcgtgaggt
      661 tcgggtcctg cgtgccctcc tcgtcgcgcg ccgtatagcg aaagttttcg cggatgtgct
      721 ggttcatggt gatcagcatc tcgcgtgtgc tggtcgggcc gtcggtgcgg atgaactggc
      781 gcgcccacgc cgtcagttcg ccgcccaggt cgtcatgggc cgggcgcagg tagtgctcaa
      841 ggtcgaagcg ttcgtcgacg ctgtaggcga acggaaacag ctcggcgctc ggcgccagcg
      901 gcagttcgag gttgtaggtc tgggcgtgct cgatcgtgaa actgcagacg atcctgaact
      961 cgtcggcggg ctcgaggggc tggaccagcg cgatcgaatt cgaatgcggg tcctggatca
     1021 tccgcacgtc gcaatcgggc gtgacctcga ggtcggtcgc gagcacccgc aggtcatggc
     1081 tgtcgcgggg gcgaaacatc acccggtgct cgccgaacgt gaccggctga cgatagcggt
     1141 agaccgtcgt gtgggtgatg tcgtaccgga tcggcatggc tagggcaggc cctgcgcttc
     1201 agaggtcaag caactcgacc tcgaacatca gcgtcgcgtt cggcgggatc accccgccgg
     1261 cgccgcgcgc gccgtagccg agcgcgggcg gaatcacgag cacccgtgta ccgccaaccc
     1321 gcatgccttg cacgccctcg tcccagcccc ggatgacccg tccggcaccg agctcgaacg
     1381 agaacgggtc gttgcgatcc ttgctcgaat cgaacttcgc gcccttgacg ccgtcttcgt
     1441 agacccaccc ggtgtagtgc accgagacgc tttggccgga ttcggcgagt tcgccgctgc
     1501 ccagcaccgt gtcgtcgtac tggaggccgg aatcggtcgt gttcatctga gcctgccttt
     1561 catgtcgtca tgggtgccgc catcatgcca gccgtccgtg gcaagcgccg gtcatgtccc
     1621 gaaaggcccg ggtggacgcg ccgtagccag ccagcgcgaa cgccactgcg ccgtcgcctg
     1681 ggcgagccat cccggcacat cggccgcgtc agcccgcagg gcgagcagcg tgcccgccgc
     1741 ctcgagcgct tcgagcggcc gcgcggtgtc gaggggcagg gccccgttct gcttcgaaag
     1801 cttcgcaccg tcggcggcgc gtacgagcgg gacgtgcaga tacgccggtc gctcgaagcg
     1861 gagcaggcgt tgcagatgga tctggcgggc cgtgttgtcg gcaaggtcct cgccccgcac
     1921 gatgtgggtc acaccctgcg ccgcgtcgtc ggcgacgacg gcgagctggt aggcccagag
     1981 gccgtcggcg cggcgcacga cgaagtcgcc gacttcgcgc gacacgtcct gtcgttgcgg
     2041 cccgagccgc cgatcggtcc agtcgacgat gaggggtgaa tcgggcgcat ccaccgtggg
     2101 cgcggccagc acccgcaggg ctcgcgccgc tttgccgtgc aggccgttgc ggcaggttcc
     2161 gggatagacc aactcgtcgt gccgcgccgg cgcgtcgccg cgccgtgacg cggcctcggc
     2221 gagatcgcgg cgcgagcatc cgcacggata ggcccagccg ccggcgacaa ggcgcgcgag
     2281 ggcggcggcg tagaccggtt cgcgccgcga ttgccacacc ggcgtctcgt cgggcaggag
     2341 gccgcacgcg gcgagttggc gcaggatggt ctccgctgcc tccgccaccg agcgcgggct
     2401 gtcgacgtcc tcgatccgca ccagccagcg cccgccgtgg gcgcgcgcat cgagccagga
     2461 ggcgagcgcg gcgacgagcg agccggcatg cagcggaccg gtcggcgatg gcgcgaagcg
     2521 cccgatgtag cccatgcgtg ttgtgccgtc gcgtcgcaga aagcgctaga gcacgctcgt
     2581 cgaaaacggg ctgccgtggc gttcgaggag tgccttgcgg gtggccggac tctcgagttg
     2641 gtcgagccac caccgcaagg ccaggccgag ctgcggcttg cgcgcggcgc ccgccgcagc
     2701 gccgccggga agacgccagg cgtagccgag cagcgcccgc tgcgcggcac gctgcacctg
     2761 cttgacgacg agtcgtccgg cgccgatgtg ttcgcgcgcc atcggctcgg gaacgaaccc
     2821 gcacgccagg cagcgcaact ggacctcgag cttgatctgc aggctgctca cggtcagcac
     2881 gtcctggccc ggcagcaggt tgatggtgtg cggggtcagg cgctgcgccg aatcggcgac
     2941 ggcgacggcg cggtggcgca tcagttcggt gtcgctgatc gggccggtgg cggcggcgag
     3001 cgggtggtgc ggcgcgaccg cgaagacgaa ggccatcgtg ccgatctcct tcatctgcac
     3061 gccgggaatc gactcgcggc ccatgccgac accgatggcg aggtcggcct gtccggtgac
     3121 gagcgcttcc caggttccgg tcatcacttc ggtgcgcaag cgcagccggg tacccggccc
     3181 gccggcaccc gtcgtcatgc gatcggacgc tggctgggcg gtcttggccg cctgcggatc
     3241 gagcgcgtag aacgcctcgc acagctcgag gatcgtgacg cgcgagatga ccccgtccac
     3301 cgcgacgctg agctgcgctt cccagcccgt cgcgacgcgc ttcacgcggt tggcgaccgc
     3361 gtccatctgc tcgagcaggt ggcggccctc gctcagcagc tcttcgccgg ccgcggtgag
     3421 gcgggcctgg cgcgagcgcc ggtcgaacag cagcacgtcg agcgcgtctt cgagctggcg
     3481 cacgctgtac gtgagcgacg aaggaacctt gccgagctgg cgcgccgccg cggcgaagct
     3541 gccggtgcgg gcgatgacgt ccatcatcgt caaggcttcg ggggtcagga cgttgcggtt
     3601 ttggaccatg gccgttcatt ttatttgaac ggatgcttca agcgccgtgg ctggcagcgc
     3661 ccggccccgg gacctacatt cagtccggaa aggaaacaca tcgatgctca tgcttcgcaa
     3721 atcgaacgac cgcgggttcg ccgaccatgg ctggctgaag agctttcaca gcttttcgtt
     3781 cgccgactac cacgatccca agcacatggg cttcggcaat ctgcgcgtca tcaacgagga
     3841 ccgcatcgca cccgggaccg gcttcgggac ccacgggcac cgcgacatgg agatcgtcag
     3901 ctacgtcctc gccggagagc tggcacacaa ggacagcatg ggcaacggcc aggcgggcgc
     3961 ggcggtgagc ggcgtcatcc ggccgggcga cgtgcagcgc atgagcgcgg ggcgcggcgt
     4021 gatgc
//
LOCUS       DASVHM010000266         1979 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_451548, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000266 DASVHM010000000
VERSION     DASVHM010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451548"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(89..685)
                     /locus_tag="VF308_05105"
     CDS             complement(89..685)
                     /locus_tag="VF308_05105"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX7436064.1"
                     /translation="MVTRHLDLGCGPTPRNPYRRDEAHGVDIALPDGLDARFFRRANL
                     SVEPIPHADSSFESVSAFDFFEHIPRLLGTQDGRGTRFPFVELMSEIHRVLKPGGRLY
                     AVTPAFPRPEAFHDPTHVNFITDGTWAYFCGKEPAARMYGYMGSFELISNQWALHPEV
                     LTPGAKLSPMRRFKRWRRGLAGGLTHVAWEFACVKPGT"
     gene            complement(690..1499)
                     /locus_tag="VF308_05110"
     CDS             complement(690..1499)
                     /locus_tag="VF308_05110"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX7436065.1"
                     /translation="MNYTVVIPVLNQLHYTQQCVHSLLSHGVAAESLLIIDNGSTDDT
                     PEWLAAQPEIRSVRNPVNLGCGGAWTQGALLARSDWVVLLNNDIVCAHDFVGAQIAAA
                     ERHGLQVVSPALVENDLDYDLDAFTAVFLAKMSGTVREGWFHGVCFTVRRQVFEQLGF
                     PDTDRLLFGREDAEFRARCLRAGLKVGTVGDALIHHFGSITQKAMKEEQGVAKFGDHR
                     YFYAKIGLGWWGRQKAKFARRVQNAQWVRTEQNAHAMTLHMVHRDGRVEYR"
     gene            complement(1519..>1979)
                     /locus_tag="VF308_05115"
     CDS             complement(1519..>1979)
                     /locus_tag="VF308_05115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436066.1"
                     /translation="WYAHVMALIRRAFPDVAFFVACTGGLDEYPALKGFDVFDLPTAF
                     PYGYKGPSHAALRHPAADLFALACCAVIVATPCSTFSHYAADMLGAPSTLLVPPATKM
                     ARAAPSFCRLELYGRGAFDYYAACRTGQGLEAVIDAGTLPVAQGAAVDWM"
BASE COUNT          321 a          636 c          721 g          301 t
ORIGIN      
        1 tcgcgccgcc gcacgtaggg cagactcgcc ttgaggcggc gacgccaggt gcgaaagttt
       61 tcatcaaagg tcgacatcgg cgcgccgctc aagtgcccgg cttgacgcag gcgaattccc
      121 aggcgacgtg cgtgagacca cccgcgaggc cccggcgcca gcgcttgaag cggcgcatcg
      181 ggctgagctt tgcgcccggg gtcagaacct ccggatggag cgcccattgg ttggaaatca
      241 actcgaagct gcccatatag ccgtacatgc gtgcagccgg ttccttgccg cagaagtacg
      301 cccaggtgcc gtcggtgatg aagttgacgt gggtcggatc gtggaaggcc tcgggccgcg
      361 ggaaggccgg cgtcaccgca tagaggcgcc cgccgggctt gagcacgcga tggatctcgc
      421 tcatcagctc gacgaacgga aagcgcgtgc cgcgcccgtc ttgcgttccc agcaggcgcg
      481 ggatgtgctc gaagaaatcg aaggccgaga ccgactcgaa gctcgagtcg gcgtgcggga
      541 tcggctcgac gctgagattg gcgcggcgga agaagcgtgc gtcgaggcca tcgggcaggg
      601 cgatgtcgac cccgtgcgcc tcgtcgcgcc ggtacggatt gcgcggcgtc gggccgcagc
      661 cgaggtcgag gtggcgggtg accatcgcgt cagcggtatt cgacgcggcc gtcgcgatgc
      721 accatgtgca gcgtcatggc gtgcgcgttc tgctcggtgc gcacccattg cgcgttctgg
      781 accctgcgcg cgaacttggc cttctggcga ccccaccagc cgaggccgat cttggcgtag
      841 aagtagcgat ggtcgccgaa tttcgcgacg ccctgctcct ccttcatcgc cttctgcgtg
      901 atcgagccga agtggtggat gagggcatcg ccgaccgtgc cgactttcaa cccggcgcgc
      961 aggcagcgcg cccggaactc ggcgtcttcg cgcccgaata gcaggcggtc ggtgtccggg
     1021 aagccgagct gctcgaacac ctggcgtcgc accgtgaagc acacgccatg gaaccagcct
     1081 tcgcgcacgg tgccgctcat cttcgcgaga aagacggcgg tgaaggcgtc caggtcgtag
     1141 tcgaggtcgt tctcgacgag cgccgggctc acgacctgca gcccgtggcg ctcggccgca
     1201 gcgatctgcg cgccgacgaa atcatgcgcg cagacgatgt cgttgttgag cagcacgacc
     1261 cagtcgctgc gcgccagcaa cgcgccttgg gtccaggcgc cgccgcagcc gaggttcacg
     1321 gggttgcgga ccgagcggat ctcgggctgc gcggcgagcc attccggcgt gtcgtcggtg
     1381 ctgccgttgt cgatgatgag cagcgactcc gccgccacgc cgtgcgacag caggctgtgc
     1441 acgcactgct gggtgtagtg gagctggttc aggaccggga tgacgaccgt gtagttcatg
     1501 gcaggtggcc gggcagcgtc acatccagtc gacggccgcg ccctgcgcca ccggcagtgt
     1561 gcccgcatcg atgacggcct cgagcccctg gcccgtgcgg caggcggcgt agtagtcgaa
     1621 ggcgcctcgg ccgtacagct cgaggcggca gaacgagggc gccgcgcgcg ccattttcgt
     1681 ggccggcggc accagcagcg tgctcggcgc gccgagcatg tcggcggcgt agtgcgagaa
     1741 ggtggagcag ggcgtggcga cgatgacggc gcagcaggcg agcgcgaaca ggtcggcggc
     1801 cggatggcgc agcgcggcgt gcgacggccc tttgtacccg tacgggaagg cggtcggcag
     1861 gtcgaacacg tcgaagccct tcagggccgg gtattcgtcg aggccgccgg tgcaggcgac
     1921 gaagaacgcc acgtccggaa aggcgcgccg gatcagcgcc atcacatggg cgtaccacc
//
LOCUS       DASVHM010000267         6062 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1246192, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000267 DASVHM010000000
VERSION     DASVHM010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6062
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1246192"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1858)
                     /locus_tag="VF308_05120"
     CDS             complement(<1..1858)
                     /locus_tag="VF308_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011483669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX7436067.1"
                     /translation="MNAALPVVVTRDAAARTANTIARLGGAEAARLAHRLATETRGEV
                     LFDAPSRGRYATDASIYQVMPIGVFVPRSNADVAAAIDIARDLGTPLLARGAGTSQCG
                     QTTGAALVIDSSKHLRKLLAFDRQAMTAEVEPGLVLDALNAQLKAHGLWFPVDVSTSA
                     QATIGGMAGNNSCGSRSIAYGNMVHNVLGVEAWLSDGSSVAFGPVEGLGPKERAIADF
                     VRGLAAEHRAEIEALWPKVLRRVAGYNLDIFEPQSERPYTADGSVNLAHLLVGAEGTL
                     AVYKSLKLQLAPLPRHKVLGVVNFPTFHAAMDAAQHLVKLSPTAVELVDRTMIDLARA
                     NPAFRATMDAALLGAPAAILLVEFSGDDKAAALRRLRELVELVADLGLPGAVVEMPDE
                     APQKALWEVRKAGLNIMMSLKGDGKPVSFIEDCAVPLEHLAEYTDALTDVFSRHGTRG
                     TWYAHASVGTLHVRPILDMRRDGAAKMRAIAEEASALVRRFKGAYSGEHGDGLCRGEW
                     IAWQFGPKIDAALRAIKTRLDPIGLLAPRRIIDPPKMDDASLFRYAPGYKTIALTPVF
                     DWSAWNVQNDPVTEATSAPGSGGDAAGGLAKAVEMCNNNGHCRKFDAGTMCPS"
     gene            complement(1855..2547)
                     /locus_tag="VF308_05125"
     CDS             complement(1855..2547)
                     /locus_tag="VF308_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011483668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEX7436068.1"
                     /translation="MADILSIPPGVLHQQVGARLRQLIVEGEIEPGRKLNERALAEQL
                     RVSRTPLREAIRMLAAEGLVELLPNRGAVAAQLSARDIADTFEVIAGLEGQSGELAAQ
                     RITDEELSEIRALHYEMLAAHTRRDLPVYYRLNATIHNHINAAARNPVLRHTYVTVNA
                     RLQALRFRSNFDEGKWARAVQEHERMIELLSARDGTRLRKLLVTHLEHKRDAVLALME
                     SAANASPARVRA"
     gene            2662..3903
                     /locus_tag="VF308_05130"
     CDS             2662..3903
                     /locus_tag="VF308_05130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012355607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEX7436069.1"
                     /translation="MIALDQHPSGRHFLQIPGPSPVPDRILRALSLPTIDHRGPEFAL
                     LGKKVLAGMQRVFQTRHPVVIYPASGTGAWEAALVNVTSPGDAVLMFETGHFASLWHR
                     MALRLGLKPEFQTTPGDDETTGLPWSWRRGVQADLIEAHLREDRGHAIKAVCVVHNET
                     STGVTSDVASVRRAIDAARHPALLMVDTISGLACAEYRHDEWGVDVAVSGSQKGLMLP
                     PGISFNALSPRAIEASRSATLPKAYWAWDEIVEMNKGGYWPYTPNTNLLYGLSEALDM
                     ILEQGLEAVFARHQRWGAGVRAAVRAWGLPIQCADPGAYSPVLTGVVTPVGVDADALR
                     KLIHDGFDLSLGTGLGTVKGRMFRIGHLGDCNDLTLIAALAGVEIGLKLAGLALAGSG
                     VQAAMEFFASHQQQEHLKAAA"
     gene            3932..4909
                     /locus_tag="VF308_05135"
     CDS             3932..4909
                     /locus_tag="VF308_05135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007873937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7436070.1"
                     /translation="MQRRSVLKAAAGAAATLGVPRLRAQAWPTGPVRIVVGFPPGGGT
                     DALARVVGQKLGVMWNQQVIIENKAGVAGVLAADYVAQQPSDGSTLLMAHINSHALAP
                     SLQPKLRYNAERDFVPIVLVGVTPNLLIANPAQPAKTAKDLVALCKAQPGRVSFGSAG
                     AGSAQHLALEMFKLQAKVDALHIPYKGSGPLLTDLMGGQIQYSFETMTAATPHVKSGK
                     VIAIAQTRTKRAKGHPTVPTMQEQGFDGFEATTWYGLAGPGKLPAAIAQKINQDVNTV
                     LAMPDVQERLDTYGAEDGGGSSEKFAQFIHTEIAKWAKVVKDADVKVDS"
     gene            complement(4988..>6062)
                     /locus_tag="VF308_05140"
     CDS             complement(4988..>6062)
                     /locus_tag="VF308_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7436071.1"
                     /translation="HELLERQKARRAQDVFGGYAAIGWGAARAPAGRALRVFASPGPI
                     YEPEGSGADYWRMGRALHAAGFRAGDLAHNSFSYHFTPAASMMETGAHALGCTVFAGG
                     TGQTEQQVQAIADLKPQGYMGTPSFLKLILEKAAELGVELASLKRASVGGEAFPPSLR
                     DWLLARGIDGYQSYGTADLGLVAYETSAREGLVLDEDVILEIVRPGTGDLVADGELGE
                     VVVTTLNRDYPLIRFGTGDLSAVLPGFCQTGRTNTRIRGWLGRADQTTKVRGMFVHPS
                     QVADIVRRHAEVKKARLVVSGAMADDRMRLEVEVEGNPEGLGARIAETIRDVTKLRGE
                     VVLRPPGSLPNDGKVIEDARRYD"
BASE COUNT          918 a         2062 c         2113 g          969 t
ORIGIN      
        1 agctcgggca catcgtgccg gcgtcgaact tgcggcagtg gccgttgttg ttgcacatct
       61 cgaccgcctt tgccaggccg ccggccgcgt cgccgccgct gccgggcgcg ctggtcgctt
      121 ccgtgaccgg atcgttctgc acgttccagg ccgaccagtc gaagaccggc gtcaacgcga
      181 tcgtcttgta gcccggggcg tagcggaaca ggctcgcgtc gtccatcttc ggcgggtcga
      241 tgatccggcg cggcgcaagc aggccgatcg ggtcgagccg ggtcttgatc gcgcgcagcg
      301 ctgcgtcgat cttgggcccg aattgccagg cgatccattc gccgcgacac agaccatcgc
      361 cgtgctcgcc gctgtaggcg cccttgaacc tgcgcacgag cgcgctcgct tcttcggcga
      421 tggcgcgcat cttggccgcg ccgtcgcgtc gcatgtcgag gatcggccgc acgtgcaagg
      481 tgccgaccga ggcatgggcg taccaggtgc cgcgcgtgcc atgccggctg aagacgtcgg
      541 tgagcgcgtc ggtgtattcg gcgaggtgct cgagcgggac cgcgcagtcc tcgatgaagc
      601 tcaccggctt gccgtcgccc ttcaggctca tcatgatgtt gaggccggcc ttgcggacct
      661 cccagagcgc cttctgcggc gcctcgtcgg gcatttcgac gacggcgccg gggagcccga
      721 ggtcggcgac cagctcgacc aattccctca gccggcgcag cgctgcggcc ttgtcgtcgc
      781 cgctgaattc gaccagcagg atcgctgccg gcgcgccgag cagggcggcg tccatcgtcg
      841 cgcgaaacgc cgggttcgcg cgtgcgaggt cgatcatcgt gcggtcgacc agctcgaccg
      901 ccgtgggcga gagtttgacg aggtgctgcg ccgcgtccat cgcggcatgg aaggtcggaa
      961 agttgacgac gccgagcacc ttgtggcgcg gcagcggggc gagctggagc ttcagactct
     1021 tgtagaccgc cagcgtgccc tcggctccga ccagcaggtg cgcgaggttg acgctgccgt
     1081 cggcggtgta cgggcgctcg ctctgcggct cgaagatgtc gaggttgtag ccggccaccc
     1141 gccgcagcac cttgggccag agcgcttcga tctccgcgcg gtgttcggcc gcgaggccgc
     1201 gcacgaagtc ggcgatcgcg cgctccttcg ggccaagccc ttcgaccgga ccgaacgcga
     1261 cgctgctgcc gtcgctcagc caggcttcga cgccgagcac gttgtgcacc atgttgccgt
     1321 aggcgatgct gcgcgagccg cacgagttgt tgcccgccat gccgccgatc gtcgcttgcg
     1381 cgctcgtcga gacgtcgacc gggaaccaga ggccgtgggc tttcagctgc gcgttcaggg
     1441 cgtcgaggac gagaccgggc tcgacctcgg ccgtcatcgc ctgccgatcg aaggcgagga
     1501 gctttctcag gtgcttgctc gagtcgatga cgagcgcggc gccggtcgtc tgcccgcatt
     1561 gcgaggtgcc cgcgccgcgc gcgagcagcg gcgtaccgag gtcgcgcgcg atgtcgatcg
     1621 cggcggccac gtcggcgttg ctgcgcggca cgaacacgcc gatcggcatc acctggtaga
     1681 tcgatgcgtc cgtcgcatac cggccacgcg aaggggcgtc gaacagcact tcgccgcgag
     1741 tctcggtcgc gagacggtgg gcgagacggg cggcctcggc gccgccgagg cgcgcgatcg
     1801 tgttcgcggt gcgcgccgcg gcgtcgcgcg tgacgacgac cggcaaggcc gcattcatgc
     1861 gcgcacgcgg gccggcgaag cgttcgcggc gctttccatc agggcgagca ccgcgtcgcg
     1921 cttgtgctcg agatgcgtca cgagaagctt gcgcaagcgg gtaccgtcac gggcggacag
     1981 cagctcgatc atccgttcat gctcctgcac cgcgcgcgcc cacttgccct cgtcgaagtt
     2041 cgaccggaag cgcagcgcct gcaggcgcgc gttcaccgtc acgtaggtgt gcctcagcac
     2101 cggatttcgg gcggccgcgt tgatgtggtt gtgaatggtc gcgttgagcc ggtagtagac
     2161 gggcaggtcg cggcgggtgt gcgcagccag catctcgtag tgcagcgcac ggatctcgct
     2221 cagttcctcg tcggtgatgc gctgggccgc caattcgccc gactggcctt cgaggccggc
     2281 gatcacttcg aacgtgtcgg cgatgtcccg cgccgagagc tgcgccgcca ccgcaccccg
     2341 gttcggcagc aactcgacca ggccctcggc cgccagcatc ctgatcgctt cgcgcagggg
     2401 tgtgcgcgag acccgaagct gttcggcgag tgcgcgctcg ttgagcttcc tgccgggctc
     2461 gatctcgccc tcgacgatga gttggcgcag ccgcgccccg acctgctggt gcagcacccc
     2521 gggcgggatc gaaaggatgt cggccatggg aacctgaatg tttgtatgca aaaaagcagc
     2581 ttctcggcgc atcgatcata gaggaaccgc cgcttgacaa tcaaattctg tatgcaaaac
     2641 ttcagaccga tcggagattc gatgatcgcg ctcgaccagc accccagcgg ccgccatttc
     2701 ctccagattc cggggccgag cccggtgccg gatcgcatcc tgcgtgcgct gagcctgccg
     2761 accatcgacc atcgcgggcc cgaattcgcg ctgctcggca agaaggtcct cgccggcatg
     2821 cagcgggtct tccagacccg gcacccggtc gtgatctatc cggcctcggg caccggtgcc
     2881 tgggaggcgg cgctcgtcaa cgtgacgagc ccgggcgacg cggtgctgat gttcgagacc
     2941 gggcacttcg cgtcgctgtg gcacaggatg gcgctgcggc tcggcttgaa acccgagttc
     3001 cagaccacac ccggcgatga cgagacgacc ggcctgccgt ggagctggcg ccgcggcgtg
     3061 caggccgacc tcatcgaagc gcacctgcgc gaagaccgtg gccatgcgat caaggcggtc
     3121 tgcgtcgtcc acaacgagac ctcgaccggc gtcacgtccg acgtcgcgtc ggttcggcgc
     3181 gcgatcgatg cggcccgtca cccggcgctg ctgatggtcg acacgatctc gggcctggcc
     3241 tgcgccgaat accgccatga cgagtggggt gtcgacgtgg ccgtcagcgg atcgcaaaaa
     3301 ggcctgatgc tgccgccggg catcagcttc aatgcgctgt cgccgagggc catcgaggcg
     3361 agccggagcg ccacgctgcc gaaggcgtac tgggcctggg acgagatcgt cgagatgaac
     3421 aagggcgggt actggcccta caccccgaac acgaacctgc tctacggcct ttctgaagcg
     3481 ctcgacatga ttctcgagca ggggctcgag gccgtgttcg cgcgccacca gcgctggggc
     3541 gcgggcgtgc gcgccgccgt gcgcgcctgg ggattgccga tccagtgcgc cgatccgggc
     3601 gcctattcgc cggtgcttac gggagtcgtc acgccggtgg gcgtcgatgc cgatgcgttg
     3661 cgcaagctga tccacgacgg cttcgatctt tcgctcggaa ccggtctggg cacggtcaag
     3721 ggccgcatgt ttcgcattgg ccacctcggc gactgcaacg acctgacctt gatcgcggcg
     3781 ctcgccggcg tcgagatcgg cttgaagctc gccggcctcg cgcttgccgg cagcggcgtg
     3841 caggcggcga tggaattctt cgcatcgcac cagcagcagg aacacctgaa ggccgcggcc
     3901 tgacacgatc gactcatacc ggggaaagcc catgcaacga cgttccgtcc tcaaggccgc
     3961 cgccggcgcc gccgccacgc tcggcgttcc ccgtctccgt gcccaggcct ggccgaccgg
     4021 accggtgcgc atcgtcgtcg gctttccgcc gggcggcggg accgatgcac tggcccgcgt
     4081 ggtcggccag aagctcggcg tgatgtggaa ccagcaggtc atcatcgaga acaaggccgg
     4141 cgtcgccggc gtgctcgcgg ccgactacgt ggcgcagcaa cccagcgacg gcagcacgct
     4201 gctgatggcg cacatcaaca gccatgcgct cgcgccgagc ctgcagccca agctgcgcta
     4261 caacgccgag cgcgatttcg tgccgatcgt gctggtcggc gtgaccccga acctgctcat
     4321 cgccaacccg gcccagccgg ccaagacggc gaaggatctg gtcgcgctgt gcaaggcgca
     4381 accgggtcgc gtcagcttcg gctcggccgg ggccggctcg gcgcagcatc tggcgctcga
     4441 gatgttcaag ctccaggcca aggtcgacgc gctgcacatt ccgtacaagg gcagcggccc
     4501 gctgctgacc gacctgatgg gcgggcagat ccagtacagc ttcgaaacga tgaccgcggc
     4561 gacgccgcac gtgaagagcg gcaaggtgat tgcgatcgcg cagacgcgga ccaagcgcgc
     4621 gaagggccac cccaccgtgc cgacgatgca ggagcagggc ttcgacggat tcgaggcgac
     4681 cacctggtat ggcctggccg ggccgggcaa gctgcccgcg gcgattgccc agaagatcaa
     4741 ccaggacgtc aacaccgtgc tcgcgatgcc cgacgtgcag gagcggctcg acacctacgg
     4801 cgccgaggac ggcggcggct ccagcgagaa gttcgcgcag ttcatccaca ccgagatcgc
     4861 caagtgggcg aaggtcgtga aggacgcgga cgtcaaggtc gacagctgag cggcgagccg
     4921 gccctgcctt cgccccttgg tcatcctcgc ctgcgcgggg atgacgcagt gaaaagcacg
     4981 aggggcttca gtcgtagcgg cgcgcgtcct cgatcacctt gccgtcgttg ggcaggctgc
     5041 ccggcgggcg taggacaacc tcgccgcgca gcttggtcac gtcgcggatg gtctcggcga
     5101 tgcgtgctcc gagtccctcg ggatttcctt cgacctcgac ctcgagacgc atccggtcgt
     5161 cggccatcgc gccgctgacg acgagccgag ccttcttcac ttcggcgtgc cggcgcacga
     5221 tgtcggcgac ctggctcggg tgcacgaaca tgccgcggac cttggtcgtc tggtcggcgc
     5281 gcccgagcca gcccctgatg cgggtgttcg tgcggcccgt ctggcagaag ccgggaagca
     5341 ccgccgagag gtcgccggtg ccgaagcgga tcagggggta gtcgcggttc agcgtcgtga
     5401 cgacgacctc gccgagctcg ccgtcggcca cgaggtcgcc ggtacctggg cgaacgatct
     5461 cgaggatcac gtcctcgtcg agcaccaggc cttcgcgcgc ggaggtttcg taggcgacga
     5521 gaccgaggtc ggcggtgccg tagctctggt agccgtcgat gccgcgcgcc agaagccagt
     5581 cgcgcaggct cggcgggaac gcttcgccgc cgaccgacgc ccttttcaac gaggcaagtt
     5641 cgacgccgag ctcggccgcc ttttccagaa tgagcttgag aaagctcggc gtacccatgt
     5701 agccctgcgg cttcaggtcg gcgatggcct gcacctgctg ttcggtctgc ccggtgcccc
     5761 ccgcaaagac agtgcagccg agcgcatgcg cgccggtttc catcatcgag gcggcgggcg
     5821 tgaagtggta gctgaagctg ttgtgcgcga ggtcgccggc gcgaaagccc gccgcatgca
     5881 gagcgcggcc catgcgccag tagtcggcgc cgctgccttc gggctcgtag atcggtccgg
     5941 gcgacgcgaa cacgcgcagg gcccggcccg ctggcgctcg cgcggcgccc cagccgattg
     6001 cggcgtatcc gccgaacacg tcctgcgcgc gccgggcttt ctggcgctcg agcagctcgt
     6061 gc
//
LOCUS       DASVHM010000268         4138 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_91654, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000268 DASVHM010000000
VERSION     DASVHM010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4138
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91654"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1461
                     /locus_tag="VF308_05145"
     CDS             <1..1461
                     /locus_tag="VF308_05145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011802892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEX7436072.1"
                     /translation="NTRFKLLSSGMPAKRLSTAFDSVTLYGNDPAERPDIYGKVGNSG
                     VSIATLEDMKVLYGGFDLTNPATSVSMTINGPAPTILAMFMNTAIDQNLDKFRTDNGR
                     EPTADEAQKIRAWVLENVRGTVQADILKEDQGQNTCIFSTEFSLKVMGDIAEYFVHHK
                     VRNFYSVSISGYHIAEAGANPLSQLAFTLSNGFTFVEAYLARGMHIDDFAPNLSFFFS
                     NGMDPEYTVLGRVARRIWAVAMRDRYGANERSQKLKYHVQTSGRSLHAQEIQFNDIRT
                     TLQALIAIYDNCNSLHTNAFDEAITTPTEESVRRAMAIQLIINREWGLAKNENPNQGA
                     FIIDELTELVEEAVLNEFEKIAERGGVLGAMETGYQRGQIQEESMHYEMQKHTGEYPI
                     VGVNTFRNPHGDPVPQALELARSTDAEKQSQLKRLADFQARHAAEAPAMLKRLQTAVI
                     ENRNVFEVLMEAVRCCSLGQITNALFEVGGQYRRSM"
     gene            1507..2670
                     /locus_tag="VF308_05150"
     CDS             1507..2670
                     /locus_tag="VF308_05150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007578823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HEX7436073.1"
                     /translation="MGPLAGLRVLEFEAIGPAPFGAMMLADMGADVLLVDRPGDARLG
                     LDRERWYDVMLRGRRSVTLDLKSTRGPEAALLLAERADVLIEGFRPGVMERLGLGPEV
                     LLARNPRLVYGRMTGWGQHGPLADRAGHGINYIALTGVLHAIGRAGEAPVPPLNLVGD
                     FGGGGMLLAFGIACAVIEARSSGRGQVVDAAMVDGASLLSTMFAGMLAARRWSEVRGT
                     NLLDSGAPWYDTYATKDGRFVAIGALEPKFYAELLVRLGLADAALPGQHDRPRWPELR
                     AAFARAFAARTRDEWCAVFEGSDACFAPVLTFSEARAHPHAAARNAFVTIGDIEQPAP
                     APRFGRTPGGTRRPPPERGALGREALGDWGFDAAQVEHLASLGLGTTTALEPR"
     gene            2717..4003
                     /locus_tag="VF308_05155"
     CDS             2717..4003
                     /locus_tag="VF308_05155"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX7436074.1"
                     /translation="MQHLRTRHILLWIAAAGFVATAQAQVHDLPRAEPESVGMSSERL
                     ARITATLRADVEAHKIPGAVLLVARQGKVVQYEAIGRIDPAAGDTPMTKDAIFRIYSM
                     SKPITSVTAMMLVEEGKLKLDDPLSKYIPAFAKVQVGVEKPGPAGEKPTLEPVPARRQ
                     ITIQDLMRHTSGLTYGFFGNSLVKTAYNEAKIFAGDPTNEVVAERLAALPLAYQPGST
                     WDYSHSTDVLGRVIEVVTGKSLYQTEKERLLDPLGMPDTAFHVADAAKCRRIAEPFAN
                     DRNFGVNSDFSDPRVAIRYESGGGGMVSTAMEYARFLQMMLNGGTLDGRRYLSPKTVA
                     YMTSDHLGTAVAVTPLYLPGPGYGFGLGFAVRRTTGEAAHPAEAGSYFWGGAGGTYFW
                     VDPKTDLFVVLMLQSPKERVHYRALTHDMVYAAVMK"
BASE COUNT          710 a         1458 c         1347 g          623 t
ORIGIN      
        1 aacacccgct tcaagctgtt gagttccggc atgcccgcca agcgcctctc gaccgcgttc
       61 gattcggtca ccctctacgg caacgacccg gcggagcgcc ccgacatcta cggcaaggtc
      121 ggcaactcgg gcgtctcgat cgcgacgctc gaggacatga aggtgctcta cggcggcttc
      181 gacctgacga acccggcgac ttcggtcagc atgacgatca acggcccggc gccgacgatc
      241 ctggcgatgt tcatgaacac cgcgatcgac cagaacctgg acaagttccg caccgacaac
      301 ggccgcgagc ccaccgccga cgaagcccag aagatccgtg cctgggtgct cgagaacgtg
      361 cgcggcacgg tgcaggccga catcctgaag gaagaccagg gccaaaacac ctgcatcttc
      421 tcgaccgagt tcagcctcaa ggtgatgggc gacatcgccg agtacttcgt gcaccacaag
      481 gtgcgcaact tctactccgt cagcatctcg ggctatcaca tcgccgaggc cggcgcgaac
      541 cccttgagcc agctcgcctt cacgctctcg aacggcttca ccttcgtcga agcgtatctg
      601 gcgcgcggca tgcacatcga cgacttcgcg ccgaacctga gcttcttctt cagcaacggc
      661 atggacccgg agtacacggt gctcgggcgc gtggcgcgcc ggatctgggc ggtcgcgatg
      721 cgcgaccgct acggcgccaa cgagcgcagc cagaagctga aatatcacgt ccagacctcg
      781 ggccgcagcc tgcacgcgca ggagatccag ttcaacgaca tccgcacgac gctgcaggcg
      841 ctgatcgcga tctacgacaa ctgcaacagc ctgcacacca acgcgttcga cgaggcgatc
      901 acgacgccga ccgaggagag cgtgcgccgg gcgatggcga ttcagctgat catcaaccgc
      961 gaatggggcc tggcaaaaaa cgagaacccg aaccagggcg ccttcatcat cgacgagctg
     1021 accgagctcg tcgaggaagc ggtgctcaac gagttcgaga agatcgccga acgcggcggc
     1081 gtgctcggcg cgatggagac cggctaccag cgcggccaga tccaggaaga gtcgatgcac
     1141 tacgagatgc agaagcacac cggcgagtac ccgatcgtcg gcgtcaacac cttccgcaac
     1201 ccgcatggcg acccggtgcc gcaggcgctc gaactggcgc gctcgaccga cgccgaaaag
     1261 cagtcgcagc tgaagcgcct cgccgacttc caggcgcgcc acgcggccga agcgccggcg
     1321 atgctcaagc gccttcagac cgcggtgatc gagaaccgca acgtgttcga ggtgctgatg
     1381 gaggcggtgc gttgctgctc gctcggccag atcacgaacg cattgttcga ggtcggcggg
     1441 cagtatcgac gcagcatgtg acatttcgcc cgccgatcgc gtcggcgcgc caacaggatc
     1501 gaacccatgg gacctctcgc cggattgcgc gtactcgagt tcgaggcgat cgggccggcg
     1561 ccgttcggcg ccatgatgct cgccgacatg ggcgccgacg tgctcctagt ggatcgcccg
     1621 ggcgatgcgc gcctcggcct ggaccgcgag cgctggtatg acgtgatgct gcgcgggcgc
     1681 cgctcggtga cgctcgacct gaagtcgacg cgcggccccg aggccgcgtt gctgctggcc
     1741 gagcgggccg acgtgctgat cgagggcttt cgccccggcg tgatggaacg gctcggcctc
     1801 ggcccggagg tcctgctcgc acgcaatccg cgcctcgtct acgggcgcat gaccggctgg
     1861 ggccagcacg gcccgctcgc cgatcgcgcc gggcacggca tcaactacat cgcgctcacc
     1921 ggcgtcttgc atgcgatcgg gcgcgccggc gaagcgccgg tcccgccgct caacctcgtc
     1981 ggcgatttcg gcggcggcgg catgctgctc gctttcggca tcgcctgcgc cgtcatcgaa
     2041 gcgcgcagct cggggcgcgg acaggtcgtg gatgcggcga tggtcgatgg cgcctcgctg
     2101 ctttcgacga tgttcgccgg catgctcgcc gcgcggcgct ggagcgaagt gcgtggcacc
     2161 aacctgctcg attcgggcgc gccctggtac gacacctacg ccacgaagga cggcaggttc
     2221 gtcgcgatcg gcgcgctcga gccgaagttc tacgccgaat tgctcgttcg gctcggcctc
     2281 gccgatgcgg cgctgccggg ccagcacgac cgaccgcgct ggccggaact gcgcgcggcg
     2341 ttcgcgcgtg ccttcgcggc ccggacgcgc gacgaatggt gcgccgtgtt cgagggctcg
     2401 gatgcgtgct tcgcgccggt gctcacgttt tcggaggcgc gcgcccaccc gcacgcggcc
     2461 gcgcgcaacg ccttcgtcac gatcggtgat atcgaacagc ccgctcccgc accccgtttc
     2521 gggcgcaccc cgggcggcac gcgtcggcca ccgcccgagc gcggcgcact cggtcgcgag
     2581 gcgctcggcg actggggctt cgacgcggcc caggtcgagc acctcgcatc gctcggcctc
     2641 gggacgacga ccgctctcga gccccgctga gcacttgcgc acgcgttcgc cgaagccttc
     2701 actcccagga agacccatgc agcacctgag aacccgccac atcctgctgt ggattgccgc
     2761 ggccggattc gtcgccacgg cgcaggcgca ggtccacgac ctgccgcgcg ccgagcccga
     2821 atcggtcggc atgtcgtccg agcgcctcgc tcgcatcacg gcgaccctgc gcgccgatgt
     2881 ggaggcgcac aagatcccgg gcgcggtgct gctcgtcgcg cgacagggca aggtcgtcca
     2941 gtacgaggcg atcggcagga tcgatccggc cgccggcgac acgccgatga cgaaggacgc
     3001 gatcttccgg atctattcga tgagcaaacc catcaccagc gtgaccgcga tgatgctggt
     3061 cgaggaaggc aagctgaagc tggatgaccc gctgtcgaag tacatccccg cgttcgccaa
     3121 ggtccaggtc ggcgtcgaaa agcccggccc cgccggcgaa aaacccaccc tggaaccggt
     3181 gccggcccgc cgtcagatca cgatccagga cctgatgcgc cacacctcgg gcctgaccta
     3241 tggattcttc ggcaattccc tcgtcaagac cgcgtacaac gaggcgaaga tcttcgccgg
     3301 cgaccccacg aacgaggtcg tggcggagcg gctcgccgcg ctcccgctcg cctaccagcc
     3361 gggcagtacc tgggactaca gccactcgac cgatgtcctc ggccgcgtga tcgaagtcgt
     3421 gaccggcaag tcgttgtacc agaccgagaa ggagcgcctt ctcgatccgc tgggcatgcc
     3481 ggacacggcg tttcacgtcg ccgacgcggc gaagtgccgc cgcattgcag agccgttcgc
     3541 caacgaccgg aacttcggcg tcaactccga tttctccgac ccccgcgtgg ccatccgcta
     3601 cgagtcgggc ggcggcggca tggtctcgac ggcgatggaa tatgcgcgct tcctgcagat
     3661 gatgctgaac ggcggcacgc tcgacggcag acgctacctg agcccgaaga ctgtcgccta
     3721 catgacttcc gatcaccttg gcacggcggt cgccgtgacc ccgctgtacc tgccgggtcc
     3781 gggctatgga tttggcctcg gcttcgcggt gcgccggacc accggcgagg ccgcccaccc
     3841 tgcggaagcg ggcagctatt tctggggcgg cgccggcggc acctacttct gggtcgatcc
     3901 gaagaccgac ctgttcgtcg tgctgatgct ccagtcgccg aaggaacgcg tccactaccg
     3961 agcgctgacg cacgacatgg tgtacgcggc ggtgatgaag taggtcacgg tcgctcgcac
     4021 ctcgcaccgg atgagcatcc tcctggtccg ccacggcgag accctgctga acgcctcgcg
     4081 cacgttgcag ccggcggaca cgccgctcag cgcacgcggc ctggcccagg cccatgcg
//
LOCUS       DASVHM010000269         2177 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_886403, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000269 DASVHM010000000
VERSION     DASVHM010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_886403"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1213)
                     /locus_tag="VF308_05160"
     CDS             complement(<1..1213)
                     /locus_tag="VF308_05160"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HEX7436075.1"
                     /translation="MYQYTEFDRQFVHQRAAQYRDQLARNLAGRLGDDEFRPLRLQNG
                     WYVQRHAPMLRVAVPYGELSATQLRALGHVARTFDRGYGHFTTRQNLQFNWIPLARSA
                     DVMDALAAVDMHGIQTSGNCIRNITSDALAGVAKDEVVDPRPYTEILRQWSTLHPEFA
                     FLPRKFKIAVTGAAEDRAAIGWHDIGLQLLKDETGAIGFKVLVGGGMGRTPVIGITIR
                     EFLPWQQILVFIEAIVRVYNRYGRRDNMYKARIKILVKAEGRKFIDAVDAEFAQILER
                     DAGGAAHIVSQSEFDRVSASFELPEGVAEVPEAPLPLTDVAPAFARWLQRNVHGHRLA
                     GYRAVTLSLKRAGQPPGDVTADQMDAAAALAERFSHGELRVTHDQNLLLPWVRQSDLL
                     ALWQAAREASFA"
     gene            complement(1216..1983)
                     /locus_tag="VF308_05165"
     CDS             complement(1216..1983)
                     /locus_tag="VF308_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEX7436076.1"
                     /translation="MDLIAILSGFGVGAIVGMTGVGGGSLMTPLLLSAFRLSPAVAIG
                     TDLWFAAVTKTAGSASHHLAGHVQWRIVALLLAGSIPASVATIALMHVTGVTKAWSHA
                     LTLSLGIALLITALTVAYRHIWQGVGVRLERWIPAERKAAVTVACGLVLGVLVSLSSI
                     GAGAIGATLILLIYPKLKPHQVVGTDIAHAVPLTLVAGIGHATLGHVEWALLVSLLVG
                     SIPGIWLGAQLTRRMPERVVRALLCVSLVSAGLKVIY"
BASE COUNT          357 a          690 c          792 g          338 t
ORIGIN      
        1 tcgcgaagct cgcctcgcgg gcggcctgcc agagcgcgag caggtcgctt tgccgcaccc
       61 agggcagcag caggttctgg tcgtgcgtga cgcgcagttc gccgtggctg aagcgctcgg
      121 cgagcgcggc cgcggcgtcc atctggtcgg ccgtgacgtc gccggggggc tggccggcgc
      181 gcttgagcga gagcgtcacc gcgcgatagc cggcgagtcg atggccgtgc acgttgcgct
      241 gcagccagcg ggcgaaggcg ggtgcgacgt cggtcagcgg gagcggcgct tccggcacct
      301 cggccacgcc ttcgggcagt tcgaaactgg ccgagacccg gtcgaactcg ctctgcgaaa
      361 cgatgtgcgc ggcgccgccc gcgtcgcgct cgaggatctg ggcgaactcg gcgtcgaccg
      421 cgtcgatgaa cttgcggccc tcggccttga cgaggatctt gatgcgcgcc ttgtacatgt
      481 tgtcgcgccg gccgtagcgg ttgtagacgc gcacgatcgc ctcgatgaag acgaggatct
      541 gctgccaggg caggaactcg cggatcgtga tgccgatcac cggtgtgcgg cccatgccgc
      601 cgccgaccag gaccttgaag ccgatcgcgc ctgtttcatc cttgagcagc tgcaggccga
      661 tgtcgtgcca gccgatcgcg gcgcggtctt cggcggcgcc ggtgacggcg atcttgaact
      721 tgcgcggcag gaacgcgaac tccggatgca gcgtgctcca ctggcgcagg atctcggtgt
      781 aaggacgcgg gtcgacgacc tcgtccttcg cgacgccggc gagcgcgtcg ctggtgatgt
      841 tgcggatgca gttgccgctg gtctggatgc cgtgcatgtc gacggcggcg agcgcgtcca
      901 tgacatcggc gctgcgcgcg agcgggatcc agttgaactg caggttctgg cgcgtcgtga
      961 aatggccgta gccgcgatcg aaggtgcgcg cgacgtggcc gagggcgcgc agctgcgtgg
     1021 cgctcagttc gccataaggc accgcgacgc gcagcatcgg cgcatggcgt tggacgtacc
     1081 agccgttctg caggcgcagc gggcgaaact cgtcgtcgcc gagccggccc gcgagattgc
     1141 gcgcgagctg gtcgcggtat tgcgcggcgc gctggtgtac gaactggcgg tcgaattcgg
     1201 tgtattggta catggtcagt agatcacttt caggccggcg ctgacgagcg acacgcaaag
     1261 caacgcccgc accacgcgct cgggcatgcg gcgcgtgagc tgggccccga gccagatgcc
     1321 cgggatcgag ccaacgagca gcgagaccag cagggcccac tcgacgtgcc cgagggtggc
     1381 atggccgatg cccgcgacga gcgtgagcgg caccgcgtgg gcgatgtcgg tgccgaccac
     1441 ctggtgcggc ttgagcttcg gatagatcag caggatcagg gtcgcgccga tcgcgccggc
     1501 gccgatcgag ctgagcgaga cgagcacccc gagcacgagt ccgcatgcga ccgtgactgc
     1561 cgccttgcgc tcggccggaa tccagcgctc gagccgcacg ccgacgccct gccagatgtg
     1621 gcgatacgcg acggtcagcg cggtgatcag gagcgcgatc cccaacgaca gcgtcagcgc
     1681 atgggaccag gccttggtca ccccggtcac gtgcatgagg gcgatcgtcg cgaccgaggc
     1741 ggggatgctg cccgccagca gcagcgccac gatgcgccac tgcacgtgtc cggccaggtg
     1801 gtgcgacgcc gatccggcgg ttttcgtgac ggccgcgaac cagaggtcgg tgccgatcgc
     1861 cactgcgggg gagaggcgga acgccgacag cagcagcggc gtcatcagcg agccgccgcc
     1921 gacgccggtc atgccgacga tggcgccgac gccgaaaccg ctcaagatcg caatcaggtc
     1981 catcggatgc gcacagacaa agtaaagaac gccggatggc gttcaggtca gggactgtat
     2041 gaaggcggca tcgaataggg aatgactctt tagttgattg gttatcctgt acaggcatat
     2101 gaacgcgggc gagcccttag cattcgaagg tgacagatcc cgtttcgacg catcgtttcg
     2161 gccgccgggc tgtgctc
//
LOCUS       DASVHM010000270         2489 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_597578, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000270 DASVHM010000000
VERSION     DASVHM010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_597578"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..1752)
                     /locus_tag="VF308_05170"
     CDS             complement(112..1752)
                     /locus_tag="VF308_05170"
                     /EC_number="1.3.8.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003995 - acyl-CoA dehydrogenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HEX7436077.1"
                     /translation="MSTMERFVTHEVENQVPALGPCNVFLTDVALREGVAREGAAWAE
                     ADLAAFGAIAGGEMMELGIAANENKPKLKSFDRGGRRLDEVDFHPAYHRLMQLGMEHG
                     VHAFGWRHAERAGAHVARAALFFMHDQADSGTCCPLTMTHAVVPALRHNPALAAEWLP
                     RLTAFAYDPRSVPAAEKRGCTMGMGMTEKQGGSDVRANTTRALLQADGSYELVGHKWF
                     VSAPMSDAWLVLAQAEGGITCFLMPRFRPDGARNAIRIQRLKDKLGDWSNASAEVEFQ
                     GAFCQKVGDEGRGVATILEMVSLTRLDCMTGSAGLMRQATVQAIHHAQHRRAFGKRLI
                     EQPLMRNVLADLALEGEAATALSLRVARAVDARDRDAGEAALARIATALGKYWICKRA
                     PALVNEAQECLGGAGYIEESSLARLYRQAPLNSIWEGCGNIQCLDVLRALSKEPETRV
                     AFFKELDAARGARAELDREVTWLLHALDDRATLELRARRVVERMTLALQASILLRGGS
                     DAVAESFCASRLGGEHGASFGTLAPGAAIDALIERSAA"
     gene            complement(1837..2322)
                     /locus_tag="VF308_05175"
     CDS             complement(1837..2322)
                     /locus_tag="VF308_05175"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX7436078.1"
                     /translation="MRSLRSPTPADVGALEEILLASRPFFSDEECRIAVQLIREGIDP
                     PDDADPYQLLVAEEGGIVSGYACFGSIPLTEGAYDLYWIAVAPARRRAGTGRALLVRI
                     EEIVAQQGGRLIVAETSSRADYLPTRRFYEESMGYETAARMRDFYKSGDDKIVYVKYV
                     A"
     gene            complement(2291..>2489)
                     /locus_tag="VF308_05180"
     CDS             complement(2291..>2489)
                     /locus_tag="VF308_05180"
                     /inference="COORDINATES: protein motif:HMM:NF019121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEX7436079.1"
                     /translation="ARVDVRVDRSGRPFVLEVNPNPSLSQGIGLARAAGLAGYTYEQL
                     VQMFARNAEERGAQSPLSHAG"
BASE COUNT          376 a          893 c          847 g          373 t
ORIGIN      
        1 gtctcgagcc cgcgcacggc gagcgcgcgg ccgatcgcga gcccgaccac accggctccc
       61 gcgaccaccg catcgacccg gtccatccac cgtcctcgcc cgaattcgag ctcaggcggc
      121 gctgcgctcg atcagcgcgt cgatcgcggc accgggggcg agcgtgccga aggaagcccc
      181 atgctcgccg cccagacggg acgcgcagaa gctctccgcc acggcatcgc tgccgccacg
      241 caacaggatc gaagcctgca gcgcgagcgt catgcgctcg accacgcggc gcgcgcgcag
      301 ctccagcgtc gcgcggtcgt cgagcgcatg cagcagccag gtgacttcgc gatcgagctc
      361 ggcgcgcgcg ccgcgcgccg catcgagttc cttgaagaat gcgacgcggg tctcgggttc
      421 cttcgacagg gcgcgcagca catcgaggca ctggatgttg ccgcagcctt cccagatcga
      481 attgagcggc gcctgccgat agaggcgcgc caggctcgac tcctcgatgt agccggcgcc
      541 gccgaggcat tcctgggcct cgttgacgag tgccggcgcg cgcttgcaga tccagtactt
      601 gccgagcgcg gtggcgatcc gcgcgagcgc ggcctcgccg gcatcgcgat cgcgcgcgtc
      661 gacggcgcgc gccacgcgca gcgagagcgc ggtcgccgcc tccccttcga gcgccaggtc
      721 ggcaagcacg ttgcgcatca gcggctgctc gatcaggcgc ttgccgaacg cgcggcgatg
      781 ctgcgcgtgg tggatcgcct gcacggtcgc ctggcgcatc aggccggccg agccggtcat
      841 gcaatcgagc cgcgtcaatg agaccatctc gaggatggtc gcgacgccgc ggccctcgtc
      901 gccgaccttc tggcagaagg cgccctggaa ttcgacctcg gcggaggcgt tgctccagtc
      961 gccgagcttg tccttgaggc gctggatgcg gatcgcgttg cgtgccccgt ccggcctgaa
     1021 gcggggcatc aggaagcagg tgatgccgcc ttcggcctgg gccagaacca gccaggcgtc
     1081 gctcatcggc gccgagacga accacttgtg gccgaccagc tcgtagctgc cgtcggcctg
     1141 caggagcgcg cgcgtcgtgt tcgcgcgcac gtcggagccg ccctgcttct cggtcatgcc
     1201 catgcccatc gtgcagccgc gcttttcggc cgccggcacg ctgcgcggat cgtaagcgaa
     1261 ggcggtcaag cgcggcagcc actcggccgc gagcgccggg ttgtgacgca gcgccggcac
     1321 gaccgcgtgg gtcatcgtca gtgggcagca ggtgccgctg tcggcctggt catgcatgaa
     1381 gaagagcgcc gcgcgcgcca cgtgcgcgcc cgcacgctcg gcatgccgcc acccgaacgc
     1441 gtgcacgcca tgctccatgc cgagctgcat gaggcggtgg tacgcggggt ggaaatcgac
     1501 ctcgtcgaga cgccggccgc cgcgatcgaa gctcttcagc ttcggcttgt tctcgttcgc
     1561 ggcaatgccg agctccatca tttcgccgcc ggcgatggcg ccgaatgcgg cgaggtccgc
     1621 ttcggcccag gccgcgccct cgcgcgccac gccttcgcgc agtgcgacat cagtcagaaa
     1681 aacgttgcag gggccgagag ccgggacctg gttctcgact tcgtgggtga cgaagcgttc
     1741 catggtggac atgtgctgcc ttccgttgcg ggtcgcggga tcgcgcgcgc cgatcttcgc
     1801 acgcacgtca ccagaacgac ctgcggcccg cctttctcac gccacgtact tgacgtacac
     1861 gatcttgtcg tcgcccgact tgtagaaatc gcgcatccgc gcggcggtct cgtagcccat
     1921 cgactcctcg tagaagcgcc gcgtcgggag gtagtccgcg cgactcgacg tctccgccac
     1981 gatcaaccgg ccgccctgct gcgcgacgat ctcctcgata cggacgagga gcgcgcggcc
     2041 ggtgcccgcg cggcgccgcg ccggcgcgac cgcgatccag tagaggtcgt aagcgccctc
     2101 ggtgagcggg atcgacccga agcacgcgta gcccgagacg atgccgccct cctccgcgac
     2161 gaggagttgg tacgggtccg cgtcgtcggg aggatcgatc ccctcgcgga tgagttggac
     2221 cgcgatccgg cattcctcgt cggagaagaa agggcggctc gcgaggagga tctcctcgag
     2281 ggcaccgacg tcagccggcg tgggagagcg gagactgcgc accccgttcc tccgcgttcc
     2341 ttgcgaacat ctgcacgagt tgctcatacg tgtagcccgc aaggccggcc gccctggcca
     2401 ggccgatacc ctgagagaga ctcggattcg ggttcacctc cagcacgaac ggccggccgc
     2461 tccgatccac gcgcacatcc acacgcgcg
//
LOCUS       DASVHM010000271         3189 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_812507, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000271 DASVHM010000000
VERSION     DASVHM010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3189
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_812507"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VF308_05185"
     CDS             <1..292
                     /locus_tag="VF308_05185"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7436080.1"
                     /translation="VIYALGTKANPIVAQATQGLALNKWGYIVADEATQATNLPGVFA
                     GGDIVTGGATVILAMSAGRRAAKAIAAHLQQGRHKWPVTLDDVAAFVPPTPL"
     gene            303..2432
                     /locus_tag="VF308_05190"
     CDS             303..2432
                     /locus_tag="VF308_05190"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7436081.1"
                     /translation="MLCPKCHRPLDDDDDGVYICCADASLQWRCTQCAKVSEGFAFPY
                     GSCPHCGGKLEVLDARRVHETAALEGIRMAFEIELGGRAFYQRAAADSQDAALRDLFG
                     RFALMEGEHMETLSRRYHIDVPTPSQAFRVEVAAVFADVKSRPQDPKNLFRIAIALEK
                     RAADFFVERSAHATQGSAEQQLYRELAAEEREHADTLSTEYARWRAGMPGLFGSDLLR
                     PAARPAAEPANTMNAADVLLADHDAQRTALCCGAENMSYGALRDRVACAASVWRLRGV
                     GPGDRVAIKLPDGCDWVSAFLGAIWAGGVAVAVNPRIPEGEWQYILDEAGFSAILAES
                     RDDTPSPWRERVMLLDDWRGAVAQASPRAPEAMDPEAPAFWCHSSGTSGKPKAVVHAQ
                     RFARHIEQVSREALGVRADDRLFASSKLFFAYPQTNSLFAGLKLGASVVLDPQWPTAA
                     SVAAMVEVQRPTVLFSVPSLYRNLLHEGLAPGIARAGVRQCVSAGEALPASLRDAWRE
                     QTGLTIFNGYGASETLVLVMVDRGDAQGFTPSPGVEVRPLDEVEVGAPTRICIRAPTL
                     ALGYLDRPQAQAETFRDGAFCPADLFARNEAGGWRFAGREDSLVKIRGRWVNLVELEE
                     RLSLKSPGIVEAAAVCVPDSDGVDAVAFFFVADDDAAAGAALRACADTLPHYQRPRWL
                     HAVATLPRTPTGKLLRRELQELHRTLG"
     gene            2437..>3189
                     /locus_tag="VF308_05195"
     CDS             2437..>3189
                     /locus_tag="VF308_05195"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEX7436082.1"
                     /translation="MSTLVGTQRIGRVLVATLSRPPVNALDDTLIAQLHAVLDTAIAD
                     DGVAVLHIRSDQRVFSAGADLALIRNCFATPQGPDAMTEVVRHMQRLYERLEAAPLAT
                     LAEIGAAALGGGLELALACDFRVAALDAPLGLPEAALGLLPGAGGTQRLTRLCGPGVA
                     KRLILGAEVIDGAQAQQLGIVQWALPRDQLAPWTRELAARLAAIPKAALAANKRCIAA
                     QSDAGRNGYDEEIAETRMLYDHPETRLKVSEFL"
BASE COUNT          474 a         1097 c         1139 g          479 t
ORIGIN      
        1 cgtgatctat gcgctcggca ccaaggccaa cccgatcgtc gcgcaggcga cgcagggtct
       61 ggcgctcaac aagtggggct acatcgtcgc cgacgaagcc acgcaggcga ccaatctgcc
      121 cggcgtgttt gccggcggcg acatcgtcac cggcggcgcc acggtgatcc tggcgatgag
      181 cgccgggcgc cgcgccgcca aggcgatcgc ggcgcacctg caacaggggc ggcacaagtg
      241 gcccgtcacg ctcgacgatg tcgcggcatt cgtgcctccc acaccacttt gaggacgacg
      301 ccatgctgtg cccgaaatgc caccgcccgc tcgacgacga cgacgacggc gtctatatct
      361 gctgcgccga tgccagcctg cagtggcgct gcacgcagtg cgccaaggtc agcgagggct
      421 ttgcctttcc ctatggaagc tgcccgcatt gcggcggcaa gctcgaggtg ctcgatgcgc
      481 gccgcgtcca cgaaaccgcg gcgctggaag gcatccgcat ggcgttcgag atcgagctcg
      541 gcgggcgcgc gttctaccag cgtgccgccg ccgacagcca ggatgcggcg ctgcgcgatc
      601 tgttcggccg cttcgccctg atggagggcg agcacatgga aacgctgtcg cgccgctatc
      661 acatcgacgt gccgacaccg tcgcaggcgt tcagggtcga agtggcggcg gtctttgccg
      721 acgtcaagag tcggccgcag gacccgaaga atctgtttcg catcgcgatc gcgctggaaa
      781 agcgagccgc cgacttcttt gtcgagcgct cggcccacgc gacgcaaggg tcggccgagc
      841 agcagctgta ccgcgaactg gccgccgagg agcgcgagca cgccgacacg ctgagtaccg
      901 agtacgcgcg ctggcgtgcc ggcatgccgg gcctgttcgg cagcgatctg ctgcgtcccg
      961 cggcgcggcc ggccgcagaa cccgcgaaca cgatgaacgc ggcggacgtg ctgctcgcgg
     1021 atcacgacgc gcagcgcacc gcgctgtgct gcggcgccga gaacatgagc tacggcgcac
     1081 tgcgcgaccg tgtggcatgc gcggcgtcgg tgtggcgcct gcgcggtgtc gggccgggcg
     1141 accgcgtggc gatcaaattg cccgacggct gcgactgggt cagcgcgttc ctgggggcga
     1201 tctgggccgg cggcgtcgcg gtggcggtca acccgcgcat tcccgagggc gagtggcagt
     1261 acatcctcga cgaagccggg ttcagcgcga tcctcgccga gtcgcgcgac gacacgccct
     1321 cgccgtggcg cgaacgcgtg atgctgctcg acgattggcg aggcgcggtg gcgcaagcgt
     1381 cgccgcgcgc gcccgaggcg atggaccccg aggcgccggc gttctggtgc cactcgtcgg
     1441 gaacttcggg caagcccaag gcggtggtgc acgcgcagcg ctttgcgcgg cacatcgaac
     1501 aggtgtcgcg cgaggcgctg ggcgtgcgcg ccgatgacag gctgttcgcc agctcgaaac
     1561 tgtttttcgc ctacccgcag accaacagcc tattcgccgg cttgaagctc ggtgccagcg
     1621 tggttctcga tccgcagtgg ccgacggcgg cgagcgtggc cgccatggtc gaggtccagc
     1681 gcccgacggt gcttttcagc gtgccatcgc tgtaccgcaa cctgctgcat gaagggctgg
     1741 cgccgggcat tgcgcgcgcc ggcgtgcgcc agtgcgtgtc ggccggcgag gccctgccgg
     1801 cgagcctgcg cgacgcatgg cgcgagcaga cgggactcac gatcttcaac ggctacggcg
     1861 cgtccgaaac gctggtcctc gtgatggtcg atcgcggcga cgcgcagggt ttcacaccgt
     1921 cgccgggcgt cgaggtccgg cccctcgacg aggtcgaggt cggtgcgccg acgcgcatct
     1981 gcatacgcgc gccgacgctc gcgctgggct acctcgatcg accgcaggcg caggccgaga
     2041 ccttccgcga cggtgcgttc tgcccggccg atctgttcgc gcgcaacgag gccggcggct
     2101 ggcgctttgc aggccgcgag gattcgctgg tgaagattcg cggtcgctgg gtcaacctgg
     2161 tcgaactcga agagcggctc tcgttgaagt ctccgggcat cgtcgaagcc gcggcggtgt
     2221 gcgtgcccga cagcgacggt gtcgacgcgg tggcgttctt cttcgtcgcg gacgacgacg
     2281 ccgcggccgg cgccgcattg cgcgcttgcg ccgacacctt gccgcactac cagcggccgc
     2341 gctggctgca cgcggtggcc acgttgccgc gcacgcccac gggcaagttg ctgcgccgcg
     2401 agctgcagga actgcaccgc acgctgggtt gacgacatga gcacgctcgt gggcacccaa
     2461 cgcatcggcc gcgtcctcgt ggcgacgctt tcgcgtccac cggtcaatgc gctcgacgac
     2521 acgctgatcg cgcagttgca cgcggtgctc gacaccgcga tcgccgacga cggcgtcgcg
     2581 gtgctgcaca tccgcagcga ccagcgcgtc ttttccgccg gcgccgatct cgcgctgatc
     2641 cgcaactgct tcgctacacc acaggggccc gatgcgatga ccgaggtggt gcgccacatg
     2701 cagcgcctgt acgagcgcct ggaggcagca ccgctggcga cgctggccga gatcggggcc
     2761 gcggcgctgg gcggtggact cgaactcgcg ctggcttgcg actttcgcgt cgcggcgctg
     2821 gacgcgccgc tcggcttgcc cgaggcggcg ctgggtctac tgcccggtgc gggcgggacg
     2881 cagcggctca cgcgcctgtg cggaccgggt gtggccaagc ggctgatcct cggcgccgag
     2941 gtgatcgacg gcgcgcaggc gcagcagctc ggcatcgtgc agtgggctct gccacgcgac
     3001 caactggcgc cgtggacacg cgaactcgcg gcgcgcctcg ctgcgatccc gaaagccgcg
     3061 ctggccgcca acaagcgttg cattgccgcg cagagcgatg ccggacgcaa tggctatgac
     3121 gaagagatcg ccgaaacacg aatgctttac gaccaccccg agacgcgcct caaggtgtcg
     3181 gagttcctg
//
LOCUS       DASVHM010000272         2413 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_163463, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000272 DASVHM010000000
VERSION     DASVHM010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2413
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163463"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..417
                     /locus_tag="VF308_05200"
     CDS             <1..417
                     /locus_tag="VF308_05200"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX7436083.1"
                     /translation="APEGGGPKPAHQDNFYFGPTDIEGVVTAWIALDDSTLENGCLYF
                     GDGTNQGPVYAHFAPTDEPFNLQLPASVLGRQPMVPTPVKKGGVSFHHGNTFHESGPN
                     HSTHWRRACALHFVCNDVEFATPALPYDHALKLKVS"
     gene            452..1459
                     /locus_tag="VF308_05205"
     CDS             452..1459
                     /locus_tag="VF308_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009517335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7436084.1"
                     /translation="MKSPVKAHAILIAAVLAGVACGAYAQWKPTRPINLIVPWAAGGS
                     TDQVTRVTAAELEKALGQTIVIVDQPGASGSIGTKSALDAAKDGYTWTAGAAQDLGAY
                     ETLGSLKTRVTDWNLFLTVANIQVIGVNPATPYQNPQQLLDAMKAQPGKISVATAGVT
                     SAGHNAMELIAKATGVKYKHVTYDGGNPAVVATVAGETELTTQLAVEQADMIRGKRLR
                     PLATVSDRALELEGYGTIPPLSNTLPGFSAPANYFGIFVPKGVPDEVVKTLEKIWAEN
                     ISKSEAIKKYAASRGALFAPSQGEAAQKAVFPAVQANSWLLFEGGKAKVSPDTVGIPK
                     P"
     gene            1484..2038
                     /locus_tag="VF308_05210"
     CDS             1484..2038
                     /locus_tag="VF308_05210"
                     /inference="COORDINATES: protein motif:HMM:NF018979.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HEX7436085.1"
                     /translation="MSEQDAFDPALLSPAEARALAASELRGAVGWIAFGVAILAGSVA
                     MDRLENQGVNPYTVPGLLPGLLGIAMILLGGLLGLRSWQRGGAAKGVAGFKLEGAAAG
                     RLALVIGLILLYAVVLIGHGMPFWLASTLYVTVSIVTLQRPQRLALGRRLSWRDLALA
                     LAVGLGSGIVITFVFQELFLVRLP"
     gene            2053..>2413
                     /locus_tag="VF308_05215"
     CDS             2053..>2413
                     /locus_tag="VF308_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009517337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HEX7436086.1"
                     /translation="MFAGLADLGHAYIGFLNPTSIGLGLGGALLGIIVGILPGLSATL
                     VIALLTTLTIKLPANNAILVLICSYVGALYGGSRTAILLNIPGTAANAASCADGFALA
                     QRGEAGRAIGIATSGAFM"
BASE COUNT          392 a          881 c          767 g          373 t
ORIGIN      
        1 gcgcccgaag gcggcgggcc gaagccggcg catcaggaca atttctattt cggcccgacc
       61 gatatcgagg gcgtcgttac cgcctggatt gcactcgacg attcgacgct cgaaaacggc
      121 tgcctctact tcggcgacgg caccaaccag gggccggtct acgcgcactt cgcgcctacc
      181 gacgaaccct tcaacctgca gttgccggcc tcggtgctcg gccggcagcc gatggtgccg
      241 accccggtga aaaaaggcgg cgtcagcttt caccacggca acaccttcca cgaatccggc
      301 ccgaaccaca gcacgcactg gcgccgcgcc tgtgcgctgc atttcgtgtg caacgacgtc
      361 gagttcgcga cgccggccct gccctatgac catgccctga agctcaaggt ctcttgacgc
      421 tgtcgatcaa gccacccccg gagacatcaa aatgaaatca cccgtgaaag cccatgccat
      481 cctgatcgcc gccgtgctgg ccggcgtcgc gtgcggcgcg tatgcgcaat ggaagccgac
      541 ccgcccgatc aacctgatcg tgccctgggc cgcgggcggc tcgaccgacc aggtgacgcg
      601 cgtcaccgcg gccgaactcg agaaggcgct cggccagacc atcgtcatcg tcgaccagcc
      661 cggggcctcg ggatcgatcg gcacgaagag cgcgctcgac gcggccaagg acggctacac
      721 ctggactgcg ggcgcggcgc aggacctcgg cgcctacgag acgctcgggt cgctgaagac
      781 ccgggtgacc gactggaacc tcttcctcac ggtcgccaac atccaggtga tcggcgtcaa
      841 tccggcgacg ccgtaccaga acccgcagca gctgctcgac gcgatgaagg cgcaacccgg
      901 caagatctcg gtcgcgaccg ccggcgtcac ctcggccggt cacaacgcga tggaactgat
      961 cgccaaggcg accggcgtca agtacaagca cgtcacctac gacggcggca acccggcggt
     1021 ggtcgcgacc gtggccggcg agaccgaact gacgacacag ctcgccgtcg agcaggccga
     1081 catgatccgc ggcaagcgcc tgcgcccgct cgcgaccgtc agcgaccgag cgctcgagct
     1141 cgagggctac ggcacgatcc cgccgctttc gaacacgctc cccggcttct cggcgccggc
     1201 caactacttc ggcatcttcg tccccaaggg cgtgcccgac gaggtcgtga agacgctcga
     1261 gaagatctgg gccgagaaca tctcgaagag cgaagcgatc aagaagtacg cggcgagccg
     1321 tggcgcgctg ttcgcgccgt cgcagggcga ggccgcacag aaagcggtgt tcccggccgt
     1381 gcaggccaat tcctggctgc tcttcgaagg cggcaaggcg aaggtctcgc ccgacacggt
     1441 cggcatcccg aagccctgaa acccgctcga cgaggcaagc agcgtgtccg agcaagacgc
     1501 cttcgacccg gcgctcctct cgcccgccga agcccgggcg ctcgcggcca gcgaactgcg
     1561 cggcgccgtc ggctggatcg cgttcggcgt cgccatcctg gcgggctccg tcgcgatgga
     1621 tcggctcgag aaccagggcg tgaatccgta caccgtgccc ggcctgctgc cgggcctgct
     1681 cggcatcgcg atgatcctgc tcggcgggct cctcggactg cgcagctggc agcgcggagg
     1741 ggccgcgaag ggcgtggccg ggttcaagct cgaaggcgcc gcggccgggc ggctggcgct
     1801 ggtgatcggc ctcatccttc tctacgccgt cgtgctgatc ggccacggca tgccgttctg
     1861 gctcgcctcg acgctgtacg tgaccgtctc catcgtcacg ctgcagcggc cgcagcggct
     1921 cgcgctcggc cgcaggctgt catggcgcga cctcgctctt gcgctggccg tcggcctcgg
     1981 ctcgggcatc gtcatcacct tcgtgttcca ggaactcttc ctggttcgcc tgccctgaac
     2041 gcggaacctc ccatgttcgc cggcctcgcc gatctcggtc atgcctacat cggctttctc
     2101 aaccccacgt cgatcgggct cggcttgggc ggcgcgctgc tcggcatcat cgtcggcatc
     2161 ctgcccggac tctcggccac gctggtcatc gcgctgctga cgacgctgac gatcaagctg
     2221 cccgcgaaca atgcgatcct ggtcctgatc tgctcctacg tcggcgcgct ctacggcggc
     2281 tcgcgcacgg ccatcctgct taacattccc ggcaccgccg ccaacgccgc atcgtgcgcc
     2341 gacggcttcg ccctggctca acgcggcgaa gccggccgcg cgatcggcat cgcgacttcg
     2401 ggcgcgttca tgg
//
LOCUS       DASVHM010000273         2834 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1390445, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000273 DASVHM010000000
VERSION     DASVHM010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2834
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1390445"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VF308_05220"
     CDS             <1..212
                     /locus_tag="VF308_05220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015014168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEX7436087.1"
                     /translation="GMDLVRRILHDAAAHMTNDAVLVLEIGNERAHFERAFRRLEVAW
                     LETSAGDNQVLLVTREALAAQRRGA"
     gene            295..2295
                     /locus_tag="VF308_05225"
     CDS             295..2295
                     /locus_tag="VF308_05225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012205442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7436088.1"
                     /translation="MLVLNQVSLRRGVKLVLNQTSVTLQPGEKVGLVGRNGAGKSSLF
                     SLLAGRLQADAGDVSMPPRWRIGEVAQDMPETDEGATDFVLQGDTRLMEAQAELAAAE
                     ADDDGHAMAEAHHAISEAGGFDARPRAQSMLLGLGFAVAELDAPVDSFSGGWRMRLQL
                     ARALMCPADLMLLDEPTNHLDLDALVWLEAWLQRFDGTMIVISHDREFLDATTRVTVH
                     LDEAKLTRYTGNYTAFEEMRAERIQQQQAGFQKQQERIAHLQRFIDRFKAKASKAKQA
                     QSRVKALARMERIAPVLTSADFQFEFREPLSLPNPMLAFSGVACGYRAEVPGQADKRI
                     IEGIDRSVLAGQRIGILGANGQGKSTLVKTIAGDLPPLAGEITQGKGLTIGYFAQQEL
                     DVLSPGDGPLMHLVRLARDVGPAAREQELRDFLGSFRFVGAMATQAVGTLSGGEKARL
                     VLAMLVWQRPNLLLLDEPTNHLDLTTREALGMALNEFEGTVMLVSHDRALLRETCDEF
                     WLVAGGVVQPFDGDLDDYQRWLLEQSRTAARERAANADDRKRVGAPAQASTPARPAPT
                     TTTAAPSRREDRQAAAQVRQQRQDGIKPLRKELNLVDNRLGVLFAERDAIEAGFGEAG
                     MSATALAESGKRLKAIGAQIEALEARWLELSTRIDQLAEAAD"
     gene            2382..>2834
                     /locus_tag="VF308_05230"
     CDS             2382..>2834
                     /locus_tag="VF308_05230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020228651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX7436089.1"
                     /translation="MAARTPTSDPAWLRLDNQLCFALYSSSLAMTRLYKPLLDPLGLT
                     YPQYLALLVLWENDGASVGELGKRLFLDSGTLTPLLKRMEGAGLVRRERARGDERRVL
                     VHLTSAGRALRTRVRAVPRELAGASGCSAEELRTLTRQLQLLRAQLHGS"
BASE COUNT          467 a         1017 c          948 g          402 t
ORIGIN      
        1 acggcatgga tctcgtccgg cgcatcttgc acgacgcggc cgcccacatg acgaacgacg
       61 ccgtcctcgt cctcgagatc ggcaacgagc gggcgcattt cgagcgcgcc ttccggcggc
      121 tcgaggtcgc gtggctcgaa accagcgcag gcgacaatca ggtgctgctc gtcacgcgcg
      181 aagcgctcgc cgcgcaacga cgcggcgcct gacccccggc gcgcccttgg cggcgctcct
      241 ccacagtccc cgcgtcgcgg ctttgccgcg tcgcatattt ttctcgttgc ctgcatgctc
      301 gtcctcaatc aagtctccct gcggcgcggc gtcaagctgg tgctcaatca aacgagcgtc
      361 acgctgcagc ccggtgaaaa ggtcggcctc gtcggccgca acggcgccgg caagtcgtcg
      421 ctgttctcgc tcctcgccgg ccgcctacaa gccgacgccg gcgatgtgag catgccgccg
      481 cgctggcgca tcggcgaagt cgcgcaggac atgccggaga ccgacgaagg cgcgaccgac
      541 ttcgtgctcc agggcgacac ccggctgatg gaagcccagg ccgaactcgc cgccgccgaa
      601 gccgacgacg acggccacgc catggccgag gcccaccatg ccatcagcga agccggcggc
      661 ttcgacgcgc gtccgcgcgc ccaatcgatg ctgctcggcc tcggcttcgc ggtggccgag
      721 ctcgacgcgc cggtcgatag tttttccggc ggctggcgga tgcgcctgca actcgcccgc
      781 gcgctgatgt gcccggccga cctgatgctg ctcgacgaac ccaccaacca cctcgacctc
      841 gatgcgctgg tctggctcga agcctggctg cagcgcttcg acggcacgat gatcgtgatc
      901 agccacgacc gcgaattcct cgacgcgacg acgcgcgtca cggtgcacct cgacgaagcc
      961 aagctgacgc gctacaccgg caactacacg gccttcgagg agatgcgcgc cgagcgcatc
     1021 cagcaacagc aggcgggctt tcagaagcag caagaacgca tcgcgcacct gcagcgcttc
     1081 atcgatcgct tcaaggcgaa ggccagcaag gccaagcagg cgcagagccg ggtcaaggcg
     1141 ctggcccgca tggagaggat cgcgccggtg ctgaccagcg ccgacttcca gttcgagttc
     1201 cgcgaaccgc tcagcctgcc gaatccgatg ctcgcgtttt ccggcgtcgc ctgcggctac
     1261 cgggccgagg tgcccgggca ggccgacaag cgcatcatcg agggcatcga ccgctcggtg
     1321 ctcgccggcc agcgcatcgg catcctcggc gcgaacggac agggcaagtc gacgctcgtg
     1381 aagacgatcg ctggcgacct gccgccgctc gccggcgaga tcacgcaagg caagggcctg
     1441 acgatcggct acttcgcgca gcaggaactc gacgtcctgt cgcccggcga cggaccgctg
     1501 atgcatctgg tccggctcgc gcgcgatgtc ggcccggccg cgcgcgagca ggagctgcgc
     1561 gactttctcg gctcgttccg cttcgtcggc gcgatggcga cccaggccgt cggcacgctc
     1621 tcgggcggcg aaaaggcccg cctcgtgctg gcgatgctgg tctggcagcg tcccaacctg
     1681 ctgctgctcg acgagccgac gaatcacctc gacctgacca cgcgcgaggc gctcggcatg
     1741 gcactgaacg agttcgaggg caccgtgatg ctggtgagcc acgaccgggc gctgctgcgc
     1801 gagacctgcg acgagttctg gctcgtcgcc ggcggcgtgg tgcagccgtt cgatggcgac
     1861 ctcgacgact accagcgctg gctgctcgag cagtcgcgca ccgcagcccg cgaacgcgcg
     1921 gcgaacgccg acgaccgcaa gcgcgtcgga gccccggcgc aggcgtcgac cccggcaagg
     1981 ccggcgccaa cgacgacaac cgcggcgccg agccggcgcg aggatcggca agcggcagcg
     2041 caggtgcgcc agcagcgcca agacggcatc aagccgctgc gcaaggagct gaacctcgtc
     2101 gacaaccgcc tcggcgtgct gttcgccgag cgcgatgcca tcgaggcggg gttcggcgaa
     2161 gccggaatga gcgccacggc gctggccgag agcggcaagc gcctgaaagc catcggcgcg
     2221 cagatcgagg cgctcgaggc gcgttggctc gaactgagca cgcgcatcga tcaactggcc
     2281 gaagccgcgg actgagtggg acacaagggc atgcctgggc gcggccttgt gcatttaggt
     2341 tgcgaggcat taaattgcgc gcaatcgatt atcatcccga catggcagcg cgaaccccga
     2401 cgtccgaccc cgcgtggctg cgcctggaca accagctctg cttcgcgctc tattcgagct
     2461 cgctcgcgat gacacggctc tacaagccgc tcctcgatcc gctcggtctg acctacccgc
     2521 aatacctcgc gctgctggtg ttgtgggaga acgacggcgc cagcgtcggc gagctcggca
     2581 aacgtctctt cctcgattcc gggaccttga ctccgctgct caagcgcatg gaaggggccg
     2641 gcctggtgcg gcgcgaacgg gcgcgcggcg acgaacgccg cgtcctcgtc catctcacgt
     2701 cggcgggtcg ggcgctgcgc acccgggtgc gcgcggtgcc gcgcgaactc gccggcgcga
     2761 gcggctgcag cgcggaggaa ctccgcaccc tgacgcggca actccagctg ctgcgcgccc
     2821 aactgcacgg ttcg
//
LOCUS       DASVHM010000274         4354 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1247087, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000274 DASVHM010000000
VERSION     DASVHM010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4354
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1247087"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(84..554)
                     /locus_tag="VF308_05235"
     CDS             complement(84..554)
                     /locus_tag="VF308_05235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436090.1"
                     /translation="MGSLQHRTRGRSRALAALLCVAASAASAQEFNFQRDCAPWIEKR
                     GYSTDYIEQKVGERQPGTADGWRGNVAAKDVQPGDVVLTLIREKGRSMRASYVEDVRR
                     NADGSPGAVFVSEWNMGRYIDERCFVTDHFGMLSPPRPITIDAVVRVWRPSLPL"
     gene            complement(585..1223)
                     /locus_tag="VF308_05240"
     CDS             complement(585..1223)
                     /locus_tag="VF308_05240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit B"
                     /protein_id="HEX7436091.1"
                     /translation="MAWTHDQMAARAARELRDGFYVNLGIGLPTQVANHVSPDIEVWL
                     QSENGMLGIGPFPTEDEVDADLINAGKQTVTTIPGSSIFGSHDSFAMIRGGKIDLSIL
                     GAMQVSERGDLANWMIPGKMVKGMGGAMDLVAGVARVLVLMEHVAKKKDGTIDLKILP
                     ECSLPLTGVGVVNRIITDLAVLDVTPEGLKVVEMADGVTREELQAKTGVPLR"
     gene            complement(1226..2002)
                     /locus_tag="VF308_05245"
     CDS             complement(1226..2002)
                     /locus_tag="VF308_05245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit A"
                     /protein_id="HEX7436092.1"
                     /translation="MKKVFPSAAAALAGIVRDGQLLAVGGFGLCGIPEALIAALRDSG
                     VRDLTVISNNAGVDGFGLGLLLESRQIRKMISSYVGENKEFERQYLAGELELEFTPQG
                     TLAEKLRAGGAGIQAFFTRTGVGTLVAEGKETREFDGHVYVMERSLVPEVALVKAWKA
                     DKSGNLVFRRTARNFNPAAAMAGKITVAEVEEIVETGSIDPDAVHLPGIYVHRIVLNA
                     HPEKRIEKRTLSAAANAPATSRVAKEAAMVIAKATDKAGV"
     gene            2097..2504
                     /locus_tag="VF308_05250"
     CDS             2097..2504
                     /locus_tag="VF308_05250"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017233800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX7436093.1"
                     /translation="MDVKTLQATFDGVAADYVKRLNLRVSAVRPSEVDIAMPVAPELV
                     HGGGVLCGQAMMAAADTAMVLALIADLGEFRPMTTVQLQTSFLRPVPRETTEVAITAR
                     VLRRGKSLAFGEISIRTPDGKLAAHATTTYALL"
     gene            complement(2535..2954)
                     /locus_tag="VF308_05255"
     CDS             complement(2535..2954)
                     /locus_tag="VF308_05255"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011802056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEX7436094.1"
                     /translation="MRFELPEQKKLTFEMVIPIRWGDMDAMGHVNNTLYFRYLEIVRI
                     EWLHRAGGAPDPKGEGPVIVNAFCNFLKQLEYPGDVLAKHYVAGAGRTSFQTFITLER
                     TDAPGIIYASGGAKTVWFDFPRGKAVPLPAWLRELVE"
     gene            complement(2993..3655)
                     /locus_tag="VF308_05260"
     CDS             complement(2993..3655)
                     /locus_tag="VF308_05260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010463464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceH family protein"
                     /protein_id="HEX7436095.1"
                     /translation="MRPLSLLETRVLGVLVEKSLTVPDSYPLSLNSLTLGCNQKTARD
                     PVLGAGEGEVQAAVDALKTLNLAFESSGSRVTRYEHNLARTLGLPSQSVALLAVLMLR
                     GPQTASELRINCERLHRFGDLSAVEGFLDELAGRASEKGGALTLKLPRAPGAREARWT
                     HLLRGPPEAGAYAAAPEGEPFLPITELAALKADHAALRSELGDLRALVERLYAELGVR
                     RD"
     gene            complement(3701..>4354)
                     /locus_tag="VF308_05265"
     CDS             complement(3701..>4354)
                     /locus_tag="VF308_05265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007854458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7436096.1"
                     /translation="ERLKALRAEIEAEGGDAHVVKLDVTDHASIKAAVAHTETEMGTI
                     DILVNNSGVATTQKLTEVTPADYDYVFDTNTKGAFFVAQEVGKRMLARAKGAAPGTFT
                     GGRIVNIASMAGLKVFGQIGVYCMSKAAVVHMTRAMALEWGRFGINVNAICPGYIDTE
                     INHHQWQTEQGKRLIEMLPRKRIGKPEDLDAVMVMLCANESHFVNGAVIQADDGFAL"
BASE COUNT          680 a         1475 c         1433 g          766 t
ORIGIN      
        1 gcgcatcggc ctggatttcg tgatcccagg cgatcacgta ccagcagttg cggatgaaca
       61 tcggcgcttc gccttcgcgc gggtcaaagc ggcaggctcg gccgccagac ccgaacgacg
      121 gcatcgatgg tgatcgggcg cggcggcgac aacatgccga aatggtcggt gacgaaacag
      181 cgttcgtcga tgtagcggcc catgttccac tcgctcacga acaccgcgcc cgggctgccg
      241 tcggcattgc gtcggacgtc ctcgacgtag gaagcgcgca tgctgcggcc cttttctcgg
      301 atcagcgtca gcacgacgtc accgggctgg acgtccttcg ccgcgacgtt gccgcgccag
      361 ccgtcggcgg tgccgggctg gcgctcgccg accttctgct cgatgtagtc ggtcgagtag
      421 ccgcgcttct cgatccacgg cgcgcagtca cgctggaagt tgaattcctg ggccgacgcg
      481 gcggacgcgg cgacgcagag cagcgcagcg agcgcccggc tgcggccgcg ggttcgatgt
      541 tgcaagctgc ccatgggcct cgcgccgaat tcgaccgagg gcgttcagcg caacggaacg
      601 ccggtcttgg cctgaagctc ttcgcgcgtc acgccgtcgg ccatttccac caccttcaat
      661 ccctcgggcg tcacgtcgag caccgcgagg tcggtgatga tgcgattgac gacgccgacc
      721 ccggtcagcg gcaagctgca ttccggcaga atcttcaggt cgatcgtgcc gtccttcttc
      781 ttcgcgacat gctccatcag cacgagcacg cgcgccacgc cggccaccag gtccatcgcg
      841 ccgcccatgc ccttgaccat cttgcccggg atcatccagt tggcgaggtc gccgcgctcg
      901 ctcacctgca tcgcgccgag gatcgaaagg tcgatcttgc cgccgcggat catcgcgaag
      961 ctgtcgtgcg agccgaagat cgacgagccg gggatcgtcg tcacggtctg cttgccggcg
     1021 ttgatcaggt cggcgtcgac ctcgtcctcg gtcgggaacg ggccgatgcc gagcatgccg
     1081 ttctcgcttt gcagccagac ctcgatgtcc gggctgacgt gattggcgac ctgcgtcggc
     1141 agcccgatgc cgaggttcac gtagaagccg tcccgcagct cccgggccgc gcgcgcggcc
     1201 atttgatcat gcgtccaggc catgatcaga ctcctgcctt gtcggtcgcc ttggcgatca
     1261 ccatggcggc ttccttcgca acccggctcg tggcgggcgc gttcgccgcg gccgacagcg
     1321 tccgcttctc gatgcgcttt tcgggatgcg cgttcagcac gatgcgatgc acgtagatgc
     1381 cgggcaggtg caccgcgtcg ggatcgatcg agccggtctc gacgatctcc tcgacctcgg
     1441 cgaccgtgat cttgccggcc atcgcggcgg ccgggttgaa attgcgggcg gtccgccgga
     1501 acacgaggtt tcccgatttg tcagccttcc aagccttcac cagtgcgact tcggggacga
     1561 gcgaacgctc catcacgtag acgtggccat cgaattcgcg cgtctccttg ccctcggcga
     1621 ccagagtgcc gaccccggtg cgggtgaaga acgcctgaat cccggcgcca ccggcgcgca
     1681 gcttttcggc cagcgtgccc tgcggcgtga actcgagttc gagttcgccg gccaggtact
     1741 ggcgctcgaa ctccttgttc tcgccgacgt agctcgagat catcttgcgg atctggcgcg
     1801 actcgagcag cagacccagt ccgaagccat cgaccccggc gttattcgag atgacggtca
     1861 ggtcgcgcac gcccgagtcg cgcagcgccg caatcagtgc ctcggggatg ccgcacagcc
     1921 cgaaaccccc gaccgccagc aactggccgt cgcggacgat tccggcgagg gctgcggcgg
     1981 cgctgggaaa tacttttttc atgcacagtc tccattgcga caaattcagc gcgagagggt
     2041 acaccgttcg cggcgcctgc cttcgaccaa ccgcccgccc ccgaggaatt tcgatgatgg
     2101 atgtcaagac gctgcaagcc accttcgacg gcgtcgccgc cgactatgtg aagcgcctga
     2161 accttcgcgt cagcgcggtg cgcccgagcg aggtcgacat cgcgatgccg gtcgccccgg
     2221 agctcgtgca cggcggcggc gtcctttgcg gacaggccat gatggccgcg gccgacaccg
     2281 cgatggtcct cgcgctgatc gccgacctcg gcgagttccg gccgatgacg accgtgcagc
     2341 tgcagaccag tttcctgcgc ccggtgccgc gcgagacgac cgaagtcgcg atcacggccc
     2401 gcgtgctgcg ccggggcaag agcctcgcgt tcggcgagat ctcgatccgc acgcccgacg
     2461 gcaagctcgc cgcccacgcg accacaacct acgcgctgct ctgaagacag agcccttcgc
     2521 ctgggcggcg cggctcattc gaccagctcg cgcagccacg ccggcagcgg aaccgccttt
     2581 ccgcgcggga agtcgaacca gaccgttttc gcgccgcccg acgcgtagat gatgcccggc
     2641 gcgtcggtac gttccagcgt gatgaaggtc tggaagctgg tgcggccggc acccgcgacg
     2701 tagtgcttcg cgagcacgtc gcccggatat tcgagctgct tcaggaagtt gcagaacgcg
     2761 ttgacgatga ccggtccctc gcccttcggg tcgggtgctc cgccggcgcg gtgcagccac
     2821 tcgatgcgca cgatttcgag gtagcggaag tagagggtgt tgttgacatg gcccattgca
     2881 tccatgtcgc cccagcggat cgggatcacc atctcgaagg tcagtttctt ctgctcgggc
     2941 agctcgaagc gcatggtccg gatctcgaaa cggaagttat tatggacagg ccctagtcgc
     3001 gccggacgcc gagttcggcg tagagccgtt ccaccagcgc gcgcaggtcg ccgagttcgc
     3061 tgcgcagcgc cgcatggtcc gccttcaagg cagccagttc ggtgatcggc aggaacggtt
     3121 cgccttcggg cgcggcggcg taggcgcccg cctcaggcgg gcccctcagc aggtgcgtcc
     3181 agcgcgcctc gcgcgcaccg ggtgcgcgcg gcagcttcag cgtgagggcg ccgccctttt
     3241 cggatgcgcg cccggcgagc tcgtcgagaa atccctcgac cgcggaaaga tcgccaaaac
     3301 ggtgcaggcg ctcgcagttg atgcgcagct ccgaagcggt ttgcgggccg cgcagcatca
     3361 gcactgcgag cagcgccacc gactgtgatg gcagcccgag cgtgcgggcg aggttgtgct
     3421 cgtagcgggt gacccgcgag ccgctcgact cgaatgccag gttcaacgtc ttcagtgcat
     3481 cgacggcggc ctggacctcg ccttcgccgg cgccgagcac cgggtcgcgg gcggtcttct
     3541 ggttgcagcc gagggtgagc gaattcagcg acaacgggta gctgtccgga actgtcaaag
     3601 acttttcgac gagcacgccg aggacgcgcg tttcgagcag cgacaacgga cgcatcgaca
     3661 tcggatcagc agccgcgcag cgtgccggaa acgggcgccc tcagagcgcg aaaccgtcgt
     3721 ctgcctggat caccgcgccg ttgacgaaat ggctttcgtt ggcgcacagc atcaccatca
     3781 ccgcgtcgag gtcctcgggc ttgccgatgc gcttacgcgg cagcatctcg atcaggcgct
     3841 tgccctgctc ggtctgccac tggtggtggt tgatttcggt gtcgatgtag ccggggcaga
     3901 tcgcgttgac gttgatgccg aagcgccccc attcgagcgc catcgcgcgc gtcatgtgca
     3961 cgaccgccgc cttgctcatg cagtacacgc cgatctggcc gaagaccttc aggcccgcca
     4021 tcgaggcgat attgacgatt cgccctccgg tgaaggtgcc gggcgcagcg cccttcgcgc
     4081 gcgccagcat ccgcttgccg acttcctggg ccacgaagaa ggcgcccttg gtgttggtgt
     4141 cgaacacgta gtcgtagtcg gcgggcgtga cctcggtgag cttttgcgtc gtcgcgacgc
     4201 ccgagttgtt gacgaggatg tcgatcgtgc ccatctcggt ctcggtgtgc gcgaccgcgg
     4261 ccttgatgct ggcgtgatcg gtgacgtcga gcttgacgac gtgcgcatcg ccgccctcgg
     4321 cctcgatctc ggcgcgcagc gccttcaggc gctc
//
LOCUS       DASVHM010000275         3025 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1102752, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000275 DASVHM010000000
VERSION     DASVHM010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1102752"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1943)
                     /locus_tag="VF308_05270"
     CDS             complement(<1..1943)
                     /locus_tag="VF308_05270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3488 and transglutaminase-like
                     domain-containing protein"
                     /protein_id="HEX7436097.1"
                     /translation="MELSRSALPHWPGWRHLPRESRDTLFLLGVIAWTVLPHASHLPA
                     WCIALTSIVLIWRAALALTHAALPGRWILVAVLGVAAGLTFWSFRTVFGKEPGITLAV
                     VLMALKTLELRARRDAFVVFFLGFFLILTHFLYSQTLPVAVAMLISVWGLMTALVLAH
                     MPVGQPSLGQAASLAARTALLGAPIMALMFVLFPRIGPLWGVPQDGISTTGLSNSMKL
                     GSVAEVAQDDSIALRLRFDGPPPAPEAMYLRGPVLARFDGTEWRPLAPRPGGLRRGSL
                     EASANLRVSGVPVHYEITLEPLRVSALPLLEVTTTAPRIEGYAVFAGEDLVWAADRPV
                     FERVRFEADAYASFRHGPLRATEALAEYRVLPEGYNPRTLEWAAALRRTGGFDPADPG
                     PIARALLQHIRTGDYTYTLAADTYGRDAIDEFWLDRREGFCEHFAAAFVVVMRALDVP
                     ARIVTGYQGAEPLPVDGYYIVRQSSAHAWAEYWQRGVGWIRADPTAAVAPDRITHSRR
                     LAPQPGFVAGALGTMSPALLAQWRATWESINNRWNQWVLNYTRGQQFDVLKNIGFSAP
                     AWEDLALLLIGALSSLALAGAAWAWWDRHRIDPWMRQMERLRRSLQSIGVEARAHDAP
                     GTLAARLRERLGARAEVLALLLGA"
     gene            complement(1934..2920)
                     /locus_tag="VF308_05275"
     CDS             complement(1934..2920)
                     /locus_tag="VF308_05275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEX7436098.1"
                     /translation="MIAATLNPAALVRRRFRAWLQARLPRNDTVVLTQGNIYILPTRA
                     GFMFGLTLLVLLIASINYQLNLGYVLTFLLAGSGVVSMHLTHGTLRGLTLHLKPVAPV
                     FAEDPAVLDLVMTSPGKARFGIGLKIVSTSDATLAWTNVPAGGQATAQVSFVPPARGL
                     HDVPAISAETRFPLGLFRAWTVWRPAARLLVYPKIERDAPRPPAARHVPGGPTQSRSV
                     DGGEIEGVRAYQRGDPLKRIAWKKAAKALETGGDLVSRDTSASAHQELWLDWSACVGL
                     APEDRLSRLAAWTLAAHRSGADYGLRLPGLELNPADGEAHRRRCLEALALWS"
     gene            complement(2925..>3025)
                     /locus_tag="VF308_05280"
     CDS             complement(2925..>3025)
                     /locus_tag="VF308_05280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX7436099.1"
                     /translation="PQTIAHRLVPVAGAGRGRVEQVRAMIEAVPLP"
BASE COUNT          479 a         1046 c         1111 g          389 t
ORIGIN      
        1 gcgccgagca gcagggcgag cacctcggcg cgcgccccta ggcgctcgcg caagcgcgct
       61 gccagggtcc ccggcgcgtc gtgggcgcgc gcctccacgc cgatcgattg caggctgcgg
      121 cgcagccgct ccatctggcg catccacggg tcgattcgat gccggtccca ccaggcccat
      181 gcggcgccgg cgagcgcgag cgaactcaag gcgccgatca ggagcagtgc caggtcttcc
      241 caggccgggg cgctgaagcc gatgttcttc agcacgtcga actgctgccc gcgggtgtag
      301 ttcaggaccc attggttcca gcggttgttg atcgactccc aggtcgcgcg ccattgcgcc
      361 agcagggccg ggctcatggt gccgagcgcc ccggccacga agccgggctg cggcgcgagg
      421 cggcgactgt gcgtgatgcg gtcgggcgcg acggccgccg tggggtcggc gcgtatccag
      481 ccgacgccgc gctgccagta ttccgcccac gcgtgcgccg aactctggcg cacgatgtag
      541 tagccatcga cgggaagcgg ctccgcgccc tggtatccgg tgacgatgcg tgcgggcacg
      601 tcgagcgcgc gcatcacgac gacgaaggcc gccgcgaagt gttcgcagaa gccttcgcgg
      661 cggtcgagcc agaactcgtc gattgcgtct ctgccgtagg tgtcggcggc gagcgtgtag
      721 gtgtagtcgc cggtgcggat gtgctgcagc agcgcgcgcg cgatcggccc gggatcggcc
      781 gggtcgaagc cgccggtgcg gcggagggcc gcggcccatt ccagcgtgcg cgggttgtag
      841 ccttcgggca gcacccgata ttcggccagc gcctcggtcg cgcgcagcgg cccgtgcctg
      901 aaactggcgt aggcatcggc ttcgaagcgg acgcgttcga acaccggccg atcggccgcc
      961 cataccaggt cctcgccggc aaacaccgca tagccttcga tgcgcggcgc ggtggtcgtc
     1021 acctcgagca gcgggagcgc cgagacgcgc agcggctcga gcgtgatctc gtagtgcacg
     1081 ggcacgccgc tcacacgcag gttggcggat gcctcgagcg aaccgcggcg cagcccgccc
     1141 gggcgtggcg cgaggggcct ccactcggtg ccgtcgaagc gcgcgagcac cgggccgcgc
     1201 aggtacatcg cctcgggcgc aggcggcggc ccgtcgaaac gcaggcgcag cgcgatgctg
     1261 tcgtcctgcg cgacttcggc gaccgagccc agcttcatgc tgttcgacag gccggtcgtc
     1321 gagatgccgt cctgcggcac gccccagagc ggcccgatgc gcgggaacag cacgaacatc
     1381 agcgccatga tcggcgcccc gagcaaggcc gtgcgcgcgg cgagcgacgc ggcctgaccg
     1441 aggctcggtt gtccgaccgg catgtgcgcg agcaccagtg cggtcatcag cccccacacc
     1501 gagatcagca tcgcgaccgc gaccggcaag gtctgcgaat agaggaaatg cgtcaggatc
     1561 aggaagaagc cgaggaagaa cacgacgaag gcgtcgcgcc gcgcccgcag ttcgagggtc
     1621 ttcaaggcca tcagcaccac cgccagcgtg atgccgggtt ccttgccgaa cacggtgcga
     1681 aacgaccaga aggtgagccc cgcggccacg cccagcaccg ccaccagaat ccagcgcccc
     1741 ggcaacgccg catgggtgag cgcgagggcg gcgcgccaga tcaggacgat cgacgtgagc
     1801 gcgatgcacc aggcgggcag gtgcgaggcg tgcggcaata ccgtccaggc gatcacgccg
     1861 agcaggaaca gcgtgtcgcg cgactcgcgc ggcaaatggc gccagcccgg ccagtgcggc
     1921 agcgcggagc ggctcagctc cacagcgcga gcgcctccag gcagcgacgg cgatgcgcct
     1981 cgccatcggc gggattcagt tcaaggcccg gcaggcgcag cccgtagtcg gcgccggacc
     2041 gatgggcggc gagcgtccac gcggcgagcc gcgagagccg atcttcgggc gcgagcccga
     2101 cgcaggccga ccagtcgagc cagagttcct ggtgtgccga ggcgctggtg tcgcggctga
     2161 ccagatcgcc gccggtttcg agtgccttgg cggccttctt ccacgcgatg cgcttcaacg
     2221 ggtcgccgcg ctgatacgcg cgcacgcctt cgatctcgcc gccatcgacg ctgcggcttt
     2281 gcgtcggtcc gcccggcacg tgccgcgccg ccggcggccg gggcgcatcg cgttcgatct
     2341 tcggatagac gagcagccgc gccgcaggtc gccacacggt ccaggcgcgg aacaggccga
     2401 gcgggaagcg cgtctcggcc gagatggcgg gcacgtcgtg caggccgcgc gccgggggta
     2461 cgaagctcac ctgcgccgtc gcctggccgc cggccggcac gttggtccag gcgagcgtcg
     2521 catcggatgt cgagacgatc ttcaggccga tgccgaagcg cgccttgccg gggctcgtca
     2581 tgaccaggtc gagcaccgcg ggatcctcgg cgaacaccgg cgcgaccggc ttcaggtgca
     2641 gggtcaggcc gcgcagcgtg ccatgggtca ggtgcatcga aacgacaccg ctgccggcaa
     2701 gcaggaaggt cagcacgtag ccgaggttga gctggtagtt gatcgaggcg atgagcagca
     2761 ccagcagcgt caagccgaac atgaagccgg cccgcgtcgg caggatgtag atgttgccct
     2821 gcgtcagcac gaccgtgtcg ttgcgcggca accgcgcctg caaccaggcg cgaaagcgcc
     2881 tgcggaccag ggcggcgggg ttcagcgtgg ccgcgatcat cggctcacgg caggggcacc
     2941 gcctcgatca tggcgcggac ctgttcgacg cggccgcgac cggcgccggc gacgggcacc
     3001 aggcgatgcg cgatcgtctg cggca
//
LOCUS       DASVHM010000276         1715 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_381979, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000276 DASVHM010000000
VERSION     DASVHM010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381979"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            294..>1715
                     /locus_tag="VF308_05285"
     CDS             294..>1715
                     /locus_tag="VF308_05285"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HEX7436100.1"
                     /translation="MRVRLRIDGELLPFIELPARLRFAVVARIKITADLDIAEHRKPQ
                     DGKIDFARFGGPHIELRVVTVPTSRGLEDVVLRLLSGLKPRALDEIGLSPANLSALRD
                     VALRPYGLILICGPTGCGKTTTLHSVMRELNTEARKIWTAEDPIEITQDGMRQVQMNS
                     RVGWTFAAAMRTFLRADPDVIMISEMRDEETAHIAIEASLTGHLVLSTLHTNSAPESI
                     ARLLEIGLDPFNFSDYSLLAILAQRLVRQLCMHCREAETAGEDELDAMAGQYLGDGLA
                     ADPAGRAALRWRWQSERADEHGRIRLYRRRGCEQCEGHGYFGRLGIHELMVADETIRK
                     HIRHREDAHVVQAAALAAGMQTLRQDGIDKVLAGLTDLSEVIAATQAQRRHAPSAAAR
                     RIEVRSHSLTTRKDTMFDARHPDAPIHSGDPSRYPTSLVPTKIPPSLLAKVGETFAGA
                     LSALQRSLAALGPLARDQQSVLDT"
BASE COUNT          279 a          617 c          568 g          251 t
ORIGIN      
        1 cacgtgctcc cggtgatggc cgcgcccggc acgctgatgc cggcgatcca ccgcgcctac
       61 aacgccgccc gtgacagggc ggaggcgcgc gacggcgagg cggccgtgga cactgcgcaa
      121 ggcctggccg cctcgctcat ggccgcgccc ggggtggccg aggccaggga cacggacatc
      181 gtttcggagg ccgacagcac gctggtgcaa ctgattgatt ccgtgatcgc cgaggccccg
      241 tcaagcgccg cgcgtccgac atccacatcg agaccgccga tctgccccgc caggtgcgcg
      301 tgcgcctgcg catcgacggc gaactgctgc cgttcatcga gttgccggcg cggctgcgtt
      361 tcgcagtcgt ggcccgcatc aagatcacgg ccgacctgga cattgccgag caccgcaagc
      421 cgcaggacgg caagatcgac ttcgcgcgtt tcggcggccc gcacatcgag ttgcgggtcg
      481 tgacggtgcc gacctcgcgc ggtctggaag acgtcgtgtt gcgcctcctg agcggtttga
      541 agccgcgcgc actcgacgag atcggcctga gtccggcgaa cctctccgcc ttgcgcgacg
      601 tggccctgcg gccctatggg ctgatcctga tctgcggccc caccggctgc ggcaagacga
      661 cgacgctgca ttcggtgatg cgcgagctca acaccgaggc gcgcaagatc tggaccgccg
      721 aagacccgat cgaaatcacc caggacggca tgcgccaggt gcagatgaat tcgcgcgtcg
      781 gctggacctt cgcggcggcg atgcgcacct tcctgcgcgc cgacccggac gtgatcatga
      841 tcagcgaaat gcgcgacgag gagacggcgc acatcgcgat cgaggcctcg ctcaccggac
      901 acctggtgct gtccaccctg cacaccaact cggccccgga aagcatcgcg cggctgctcg
      961 agatcggtct cgacccgttc aatttttccg attattcgct gctcgccatc ctggcgcagc
     1021 gcctggtgcg gcaactctgc atgcactgcc gcgaggccga aaccgccggc gaggacgagc
     1081 tcgacgcgat ggccggccaa tacctgggcg acggcctcgc cgccgacccg gccgggcgcg
     1141 cggcgctgcg ctggcgctgg cagtccgagc gggccgacga acacggccgg attcgcctct
     1201 atcgccgccg cggctgcgag cagtgcgagg gccatggcta tttcggtcgc ctgggcatcc
     1261 acgaactcat ggtcgccgac gagacgatcc gcaagcacat ccggcaccgc gaggacgcgc
     1321 acgtggtgca ggcggcggca ctggccgcgg gcatgcagac cctgcgccag gacggcatcg
     1381 acaaggtgct ggccggattg accgacctgt cggaggtgat tgccgcgacc caggcgcagc
     1441 gtcgccacgc accatcagcc gctgcgcgtc gcatcgaggt tcgatcccat tcattgacta
     1501 ccaggaaaga caccatgttc gacgcccgcc atccagacgc cccgattcat tcaggcgacc
     1561 cgtcgaggta ccccaccagc ctggtgccga cgaagattcc gccgagcctg cttgccaagg
     1621 tcggcgagac cttcgccggc gcactgtcgg cgctgcagcg ctcgctcgcc gccctcggcc
     1681 cgctggcgcg ggaccagcag tcggtgctgg acacc
//
LOCUS       DASVHM010000277         3247 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_237154, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000277 DASVHM010000000
VERSION     DASVHM010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3247
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237154"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..425
                     /locus_tag="VF308_05290"
     CDS             <1..425
                     /locus_tag="VF308_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HEX7436101.1"
                     /translation="VSIFTETYSQTAAWPGAKLLAKWARIREIRDLANKEIEAVRSVG
                     GLGSSLQANLAIGADADDLALLASLGDDLKFVTITSRATLAPATSLAIAVTPASAPKC
                     ERCWHWRDDVGSDPARPDLCGRCTDAADLCGGKSRRVA"
     gene            428..919
                     /gene="lspA"
                     /locus_tag="VF308_05295"
     CDS             428..919
                     /gene="lspA"
                     /locus_tag="VF308_05295"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HEX7436102.1"
                     /translation="MAARKAGGSLLPWLGIALIVILVDQFAKTLILGTFELNDSHTVT
                     SFFNVVRVHHTGAAFSFLAGATGWQRWFFVGLGAVAAIFIVWMLRSHGGQRLFCWALA
                     LILGGALGNVLDRIMHGHVVDFIQVHYRGSYFPAFNVADSAITVGAALLILDELLRVR
                     RAR"
     gene            complement(941..1933)
                     /locus_tag="VF308_05300"
     CDS             complement(941..1933)
                     /locus_tag="VF308_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006299304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HEX7436103.1"
                     /translation="MNQTSTAVRIDRNGGPEEMHLVELAVGEPGPGEIRIRHHACGLN
                     FIDVYQRSGVYTLPLPLTLGMEASGVVEAVGEGVTHLKAGDRAAYASNPPGAYSTVRV
                     MPAKCVVRLPDAIDFETGAAMMLKGLTAQYLLKKTLPQEGLQPGDFVLFHAAAGGVGL
                     IACQWARALGLQLIGTAGSDEKCALAHEHGAAFTVNYRTEDFAARVKEITGGKGVKVV
                     YDSVGKDTWDKSLDCLRPFGLMASFGNASGVVPPFNPGVLGAKGSLYVTRATLFTHIA
                     TREATQAMADDLFAVVTSGKVKIRIAQRYALAEVAQAHRDLEARKTTGSSVLIP"
     gene            2011..2316
                     /locus_tag="VF308_05305"
     CDS             2011..2316
                     /locus_tag="VF308_05305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HEX7436104.1"
                     /translation="MKRLTTAPTLALATLWADLLCGAGVPTTVQRAYASSIAGEVPPD
                     QTLPELWVQDADQWLHARGLLHELRNPPHRHWACPACHEVIDGPFDQCWNCGAPMPT"
     gene            complement(2322..3104)
                     /locus_tag="VF308_05310"
     CDS             complement(2322..3104)
                     /locus_tag="VF308_05310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007835469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7436105.1"
                     /translation="MDLGIGGKWALVCAASKGLGKGCAAALVREGVNVVITARGAETL
                     EATAAELRALGGGEVRTAAGDITSVEGRAAALAACAQVDILVNNAGGPPPGDFRNWER
                     EAWIKALDANMLTPIELIRATVDGMAARGFGRVVNITSGAVKAPIDVLGLSNGARSGL
                     TGFIAGLARSPIASRGVTINGLLPGTFDTERLRTMAAASAQKAGKDPDAVLNARRLGI
                     PAQRFGTAEEFGAVCAFLCSVHAGYVTGQNILVDGGAYPGTF"
     gene            complement(3148..>3247)
                     /locus_tag="VF308_05315"
     CDS             complement(3148..>3247)
                     /locus_tag="VF308_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007835467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HEX7436106.1"
                     /translation="MGVVILGERFTAPMAFGTVLVLSGIWLLTKWR"
BASE COUNT          469 a         1183 c         1081 g          514 t
ORIGIN      
        1 cggtctcgat cttcacggag acctacagcc agaccgctgc gtggccgggc gcgaagctgc
       61 tcgccaagtg ggcgcgcatc cgcgaaatcc gcgacctcgc caacaaggag atcgaagcgg
      121 tgcgcagcgt cggcggactc ggctcgtcgc tgcaggccaa cctcgcgatc ggcgccgatg
      181 ccgacgacct tgcgctcctg gcctctctgg gagacgacct gaagttcgtg acgatcacct
      241 cgcgtgcgac gctggcaccc gcgacctccc tcgcgatcgc cgtcacgccc gccagcgcgc
      301 ccaagtgcga gcgctgctgg cactggcgcg acgacgtcgg cagcgatccg gcccgccccg
      361 atctgtgcgg gcgctgcacc gacgctgcgg atctctgcgg cggcaaaagc cgcagggtgg
      421 cctgaggatg gcagccagga aggcaggcgg ctcgctgctg ccgtggctcg gcatcgcgct
      481 gatcgtgatc ctcgtcgatc agttcgcgaa gacgctgatc ctcggcacgt tcgaactcaa
      541 cgatagccac acggtcacgt cgttcttcaa cgtcgtgcgc gtccaccaca ccggcgcggc
      601 attctcgttc ctcgccggcg cgaccggctg gcagcgctgg ttcttcgtcg ggctcggcgc
      661 cgtcgcggcg atcttcatcg tctggatgct gcgcagccac ggcggccaga gacttttctg
      721 ctgggccctc gcgctgatcc tcggcggcgc gctcggcaat gtgctcgacc gcatcatgca
      781 cggccacgtg gtcgacttca tccaggtcca ctaccgcggc tcgtactttc ccgcgttcaa
      841 cgtcgccgac agcgcgatca cggtcggcgc cgcgttgttg atcctcgacg agctgttgcg
      901 ggtgcggcgc gcacgctgaa gcgcaacgcg cccccgccgg tcacggaatc agcacgctcg
      961 accccgtcgt cttgcgcgcc tccagatcgc ggtgcgcctg cgccacctcg gcgagcgcgt
     1021 agcgctgggc gatgcggatc ttgaccttgc cgctcgtgac gaccgcaaac aggtcgtcgg
     1081 ccatcgcctg cgtcgcctcg cgcgtcgcga tgtgggtgaa gagcgtcgcg cgggtgacgt
     1141 agagcgagcc cttcgccccc aggacgccgg ggttgaacgg cggcacgacg cccgaggcgt
     1201 tgccgaagct cgccatcagg ccgaacggcc gcagacaatc gagcgacttg tcccaggtgt
     1261 ccttgccgac cgagtcgtag actaccttga cgcccttgcc gccggtgatc tccttgacgc
     1321 gcgcggcgaa gtcttcggtc cggtagttga cggtgaaggc cgcgccgtgt tcgtgcgcca
     1381 gcgcgcattt ctcgtcggag cctgccgtgc cgatcaattg caggccgagc gcgcgcgccc
     1441 actggcaggc gatcaggccg acgccgccgg ccgcggcgtg gaagagcacg aagtcgcccg
     1501 gctgcaggcc ttcctggggc agcgtcttct tcaggaggta ctgcgcggtc agtcccttca
     1561 gcatcatcgc cgcgccggtc tcgaagtcga tcgcatccgg cagcctgacg acgcacttgg
     1621 ccggcatcac gcggaccgtg ctgtaggcgc ccggcgggtt gctcgcatag gcggcgcgat
     1681 cgcccgcctt caggtgcgtc acgccttcgc ccacggcctc gacgacgccc gacgcctcca
     1741 tgcccagcgt caacggcagc ggcaaggtgt agacgcccga gcgctggtag acgtcgatga
     1801 agttgaggcc gcaggcgtgg tggcggatgc ggatctcgcc cggccccggt tcgccgaccg
     1861 caagttcgac gaggtgcatt tcttccggtc cgccgttgcg gtcgatgcgc accgcagtgc
     1921 tggtctggtt catggggttt gccctttagt gtccgaggtg cgctatcgtg ccagcacttg
     1981 gccggcaacg catgccggcc cgcccatcgg atgaaacgcc tgaccacggc ccccaccctc
     2041 gccctcgcca cgctctgggc cgacctgctg tgcggcgccg gcgttccgac caccgtgcag
     2101 cgcgcctacg ccagcagcat tgccggcgag gtgccgcccg accagacctt gcccgagctc
     2161 tgggtgcagg acgccgacca atggctgcac gcgcgcggac tcctgcatga actgcgcaat
     2221 cccccgcacc ggcactgggc ctgccccgca tgccacgagg tgatcgacgg gccgttcgat
     2281 cagtgctgga actgcggagc accgatgccg acctgaggac cctagaacgt gcccgggtag
     2341 gcgccgccgt cgaccaggat gttctgcccg gtgacatagc cggcgtgcac gctgcacagg
     2401 aacgcgcaga ccgcaccgaa ttcctcggcc gtgccgaagc gctgcgccgg aatgccgagg
     2461 cgacgcgcgt tcaacaccgc gtccgggtcc ttgcccgcct tctgcgcact ggcggcggcc
     2521 atcgtgcgca ggcgctcggt gtcgaaggtg cccggcagga ggccgttgat cgtgacgccg
     2581 cgcgaggcga tgggactgcg cgcgagcccc gcgatgaagc cggtcaggcc gctgcgggcg
     2641 ccgttggaca gacccagcac gtcgatcggc gccttcaccg cccccgaggt gatgttgacg
     2701 acgcggccga agccgcgcgc cgccatgccg tcgaccgtgg ctcggatcag ctcgatcggc
     2761 gtcagcatgt tggcgtcgag ggccttgatc caggcctcgc gttcccagtt gcggaaatcg
     2821 ccgggcggtg gcccgcccgc gttgttaacg aggatgtcga cctgggcgca cgcggcgagc
     2881 gccgcggcac ggccctcgac gctcgtgatg tcgcccgccg cggtgcgaac ctcgccgccg
     2941 ccgagcgccc gcagttcggc ggccgtggcc tcgagcgtct cggccccgcg cgccgtgatg
     3001 acgacgttca cgccttcgcg caccagcgcc gcggcgcagc ccttgccgag ccccttgctc
     3061 gcggcgcaga cgagcgccca cttgccgccg attccgagat ccatcgcatg ccctccccag
     3121 gattggacgt ttgccgcgcg agcggcctca acgccatttc gtcaacagcc agatgcccga
     3181 gagcaccagc acggtcccga acgccatcgg cgcggtaaag cgctcgccga ggatcaccac
     3241 acccatc
//
LOCUS       DASVHM010000278         1627 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_237179, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000278 DASVHM010000000
VERSION     DASVHM010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1627
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237179"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(32..715)
                     /locus_tag="VF308_05320"
     CDS             complement(32..715)
                     /locus_tag="VF308_05320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEX7436107.1"
                     /translation="MALSFNPQELPVLGVDTHLPAVHLAHLSAAALRARFGAPPVWTP
                     EIKTEGRFGEREPAHASVLVPLVRRDAITVLLTQRTDHLTNHPGQISFPGGRVEPHDA
                     DAAATALREAHEEIGLEPGQVEVLGAMPTYTTGTGFIVTPVVGLVPPDLALRVDPFEV
                     AAVFEVPLAFLMDPAHHRRHSIEVAGVRREFLSMPWEGADEQGRPQRFFIWGATAAML
                     RNLYRLLAA"
     gene            complement(752..1105)
                     /gene="rplS"
                     /locus_tag="VF308_05325"
     CDS             complement(752..1105)
                     /gene="rplS"
                     /locus_tag="VF308_05325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEX7436108.1"
                     /translation="MDLIQTLEHEEIARLNKTIPGFAPGDTVIVNVNVVEGTRKRVQA
                     FEGVVIAKRNRSLNSSFIVRKISSGEGVERTFQTYSPLIASIEVKRRGDVRRAKLYYL
                     RERSGKSARIKEKLA"
     gene            complement(1193..>1627)
                     /locus_tag="VF308_05330"
     CDS             complement(1193..>1627)
                     /locus_tag="VF308_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011795015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEX7436109.1"
                     /translation="SGAILLCGRYEGIDQRFIDRHVDLELSLGDFVLSGGELPALALL
                     DAVARLQEGVLGDPESHRQDSFSAGLLEGPHYSRPEVLAAGSGGPVPEVLLSGNHAAI
                     ARWRRERALELTARRRPDLIEAARASGRLDAADERFLAALLI"
BASE COUNT          265 a          532 c          571 g          259 t
ORIGIN      
        1 cgaggcgccg agcgcgacgc gcgggcgacg ttcaggcggc gagcaggcgg tacaggttgc
       61 gcagcatcgc cgcggtcgcg ccccagatga agaagcgctg cggacggccc tgctcgtcgg
      121 caccctccca cggcatcgag agaaattcgc gccgcacgcc ggccacttcg atcgagtggc
      181 gacggtggtg ggcgggatcc atcaggaagg cgagcggcac ctcgaacacc gcggccacct
      241 cgaagggatc gacgcgcagc gcgagatcgg gcggcacgag gcccacgacc ggcgtgacga
      301 tgaatccggt gccggtcgtg taggtgggca tcgcgccgag cacctcgacc tgaccgggtt
      361 cgaggccgat ctcttcatgc gcctcgcgca gtgcggtcgc cgcggcatcg gcgtcgtggg
      421 gttcgacgcg accgccggga aaactgattt gtccggggtg gttcgtgagg tgatcggtgc
      481 gttgcgtcag cagcaccgtg atggcgtcgc ggcggaccag cggcaccagc accgacgcgt
      541 gcgccggttc gcgttcgccg aagcgcccct cggtcttgat ctcgggggtc cataccggag
      601 gcgcaccgaa ccgggcgcgc aacgccgcgg ccgacagatg cgccaagtgc accgccggca
      661 gatgcgtgtc gacgccgagg accggcagtt cctgagggtt gaagctcagc gccacgagaa
      721 cttcaccacg gtgaacgccg tggcgacttc gtcaggcgag cttctctttg atgcgcgccg
      781 acttgcccga gcgctcgcgc aggtagtaga gcttggcgcg gcggacgtcg ccgcggcgct
      841 tcacttcgat cgacgcgatc agcgggctgt aggtctggaa cgtccgctcg acaccttcgc
      901 cgctcgagat cttgcgcacg atgaagctcg aattgaggct gcggttgcgc ttggcgatca
      961 ccacgccttc gaacgcctgc acgcgcttgc gcgtgccttc gacgacgttg acgttgacga
     1021 tgaccgtgtc cccgggcgcg aatcccggaa tggtcttgtt gaggcgagca atttcctcgt
     1081 gctcgagggt ctgaatcaga tccatcattt ctcctggtga tcgtgcgccg cgcttgatga
     1141 atcttcgggg aatctgggtt cccggcgggt agaggatcga aaaatctttt aattatatca
     1201 agagcgcggc gaggaagcgc tcgtccgcgg cgtcgaggcg cccactggcc cgcgccgcct
     1261 cgatgagatc gggccggcgc cgcgccgtca gttcgagcgc acgctcacgc cgccagcgtg
     1321 cgatggcggc atggttcccg gacagcagca cctcgggcac cgggcccccg ctgcccgccg
     1381 ccagcacctc gggccggctg tagtgagggc cttcgagcag gcccgcggaa aaactatcct
     1441 ggcggtgcga ctcggggtcg ccgagtacgc cttcctgcaa gcgcgcgacg gcgtcgagca
     1501 acgccagcgc cggcagctcg ccacccgaca ggacgaaatc gccgaggctc agttcgaggt
     1561 cgacgtggcg gtcgatgaaa cgctggtcga tgccttcgta gcggccgcac agcaggatcg
     1621 cgccgga
//
LOCUS       DASVHM010000279         2135 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_92868, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000279 DASVHM010000000
VERSION     DASVHM010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92868"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..782)
                     /locus_tag="VF308_05335"
     CDS             complement(<1..782)
                     /locus_tag="VF308_05335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020229526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEX7436110.1"
                     /translation="MPSRPLARVSALLVISLWLAGCNTTPKDDTAQWSPERLYSEAKE
                     EASAGSYERAGKLYERLEGRAAGSVLAQQAQIERAYMMYKSGEKAQALAILERFIKIH
                     PTSPALDYALYLQGLVNFNDNLGILGSFTSQDLAERDQQASRDAYQSYKQLVEQFPQS
                     TYADDARTRMNYIVNSLAAYEVHVARYYFRRGAYVAAANRAQQTLAEFQHSPSTEEAL
                     FIMVQSYERLGLMELRDDADRVLHRNYPDTTLYSDGIGAKKK"
     gene            856..1857
                     /locus_tag="VF308_05340"
     CDS             856..1857
                     /locus_tag="VF308_05340"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEX7436111.1"
                     /translation="MVDPLSQAPPAEPEPDEQEVAPEPWNADAECREAIADASLHGAR
                     LDKAVVAMAPEFSRTHLQGLIEQGHVSVDGQVATSASRRVRAGQRIEVVLVPTAESRA
                     FRPEALALVVVYEDEHLLVVDKPAGLVVHPAAGNWTGTLLNGLLAHVKAAATLPRAGI
                     VHRLDKDTSGLMVVGKTLAAVTALSREIAARRVHRHYLAIAQGEVREDAFSIEAPIGR
                     DPQARIRMAVVAAGKPARTDVRCILRKDGYSILRCILHTGRTHQIRVHLASRGHPLVG
                     DVLYGGKLALGLARQALHAAHLAFAHPASAQMLRFDAAPPADLQAALDVLTGTSATP"
BASE COUNT          341 a          723 c          719 g          352 t
ORIGIN      
        1 ctcttcttct tcgcgccgat gccgtcactg tagagcgtgg tgtcggggta gttgcggtgc
       61 aacacgcgat cggcgtcgtc gcggagctcc atcaggccga ggcgctcgta gctttgcacc
      121 attatgaaga gcgcttcctc ggtcgacggc gagtgctgga actcggcgag cgtctgctgc
      181 gcccgattcg ccgcggcgac ataggcgccg cggcggaagt agtaacgcgc cacgtgcact
      241 tcataggcgg cgagcgaatt gacgatgtag ttcatgcgcg tgcgcgcatc gtcggcatag
      301 gtcgactgcg gaaactgctc gaccaattgc ttgtacgact ggtaggcatc gcgcgaggcc
      361 tgctggtcgc gctcggcgag atcctggctg gtgaagctgc cgaggatgcc gaggttgtcg
      421 ttgaagttga cgaggccctg caggtagagc gcatagtcga gcgccgggct ggtcgggtgg
      481 atcttgatga agcgctcgag gatcgccagc gcctgcgctt tctcgcccga cttgtacatc
      541 atgtaggcgc gttcgatctg cgcctgctgc gcgagcacgc tgcccgcggc gcgcccttcg
      601 aggcgctcgt acagcttgcc ggcgcgttcg tagctccccg ccgaggcttc ttccttggct
      661 tcggaataga gccgctcggg gctccactgc gcggtatcgt ccttgggggt ggtgttgcag
      721 ccggccagcc acagcgagat caccagcagg gccgacactc gggccagcgg ccggctcggc
      781 aagtccatcg cgttcatgag gttttgcggc tgcgcagagc gcagccatcc cgtcgaaaag
      841 gcaagcgcgg attatatggt cgaccccctc tcgcaagccc cgcccgccga gcccgagccc
      901 gacgagcagg aggtcgcgcc ggagccttgg aacgcggacg ccgaatgccg cgaggcgatc
      961 gccgacgcgt ccctgcacgg cgcgcgcctc gacaaggccg tcgtcgcgat ggcgcccgaa
     1021 ttttcacgca cccatttgca ggggttgatc gaacaggggc acgtgagcgt cgacggccag
     1081 gtcgcgacca gcgcgtctcg cagggtgcgt gccggacagc gcatcgaggt cgtcctggtg
     1141 ccgaccgcgg aaagccgcgc gttccgtccc gaagcgctgg cgctcgtcgt ggtgtacgaa
     1201 gacgagcatc tgctggtggt cgacaagccg gccggtctgg tggtgcaccc ggccgccggc
     1261 aactggaccg gaaccctcct caacggactg ctcgcgcacg tcaaggccgc agcaacattg
     1321 ccgcgtgccg ggatcgtgca ccggctcgac aaggacacgt cgggcctcat ggtcgtcggc
     1381 aagacgctcg ccgccgtgac cgcgctcagc cgcgagatcg ccgcgcgccg ggtccatcgg
     1441 cactatctcg ccatcgcgca gggcgaagtc cgcgaggacg ccttcagcat cgaggcgccg
     1501 atcggtcggg atccacaggc gcgcatccgc atggcggtcg tcgccgccgg caagccggcc
     1561 cgcaccgacg tgcgctgcat cctgcgcaag gacggctact cgatcctgcg ctgcatcctg
     1621 cacaccgggc gcacgcatca gatccgcgtg cacctcgcgt cgcgtggcca tccgctggtg
     1681 ggcgatgtcc tctacggcgg caagctggcg ctcggcttgg cgcgccaggc gctccacgcg
     1741 gcgcaccttg cgttcgcgca tccggcgagc gcgcagatgc tgcgtttcga cgcggccccg
     1801 ccggccgatc tccaagctgc gctcgacgtc ctgacgggca catccgcaac accctgatgc
     1861 gctccgggca ggcttgggta caatggcgca ttccttcctg gcgcgagtcg agccgcagag
     1921 atctttcgat ctgcccatcg accggtaagg ccatcaagaa gcgagccggc ccccagggcc
     1981 ggctttcagg agcgacgcga gaagcgtcgc ttccccgccg ttgcaatccg ccccttcggg
     2041 caaacagcgt ggtcgcgccc cggtgcagac gagacacaag ccgccgaata tcaaccggtc
     2101 gacccggtcg aggatctaga cgaagcacat gaaca
//
LOCUS       DASVHM010000280         2228 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_813220, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000280 DASVHM010000000
VERSION     DASVHM010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2228
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_813220"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(446..1249)
                     /gene="hpaH"
                     /locus_tag="VF308_05345"
     CDS             complement(446..1249)
                     /gene="hpaH"
                     /locus_tag="VF308_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate
                     hydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase"
                     /protein_id="HEX7436112.1"
                     /translation="MLPQDTIEALARQLYEARKSRTPLRHISKAHPAMTIEDGYAIQR
                     EWVRLEIADGRFIRGRKIGLTSRAMQQASQITEPDYAPLMDDMFFEQGGDIPFERFIA
                     PRVEVELAFVLGRPLKGPGVTLFEVLSATEYVTPAVEIIDARVEQFDRETKAMRKVYD
                     TISDFAACAGIITGGRPVRPTEVDLRWVGAMLYKNGVIEETGLAAAVLNHPATGVAWL
                     ANKIAPYDEQLNAGDIVLGGSFTRPTNALRGDNFHIDYGPLGSIAFRFA"
     gene            complement(1254..1655)
                     /locus_tag="VF308_05350"
     CDS             complement(1254..1655)
                     /locus_tag="VF308_05350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006403681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate
                     Delta-isomerase"
                     /protein_id="HEX7436113.1"
                     /translation="MPHLTLDYSANLSASGDVPGLCARLAACLAAQRVDGRQVYPTGA
                     IRVRGFAADAWCIADGASDAAYVHAALKVGAGRADATLRATGDALFEVMKAHFAELYE
                     RLGLALSLEVGEFSEAGTWKHNNLHARFRKA"
     gene            complement(1691..>2228)
                     /locus_tag="VF308_05355"
     CDS             complement(1691..>2228)
                     /locus_tag="VF308_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013538715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX7436114.1"
                     /translation="LAAQRVDGRQVYPTGAIRVRGYIELGAREGASLLCGGVEAPELA
                     PAFTKGNYVRPTVFADVDNRMRIAQEEIFGPVACLIPFEDEADAVRIANDIAYGLSSY
                     VWTENLGRAHRVAAAIEAGMCFVNSQNVRDLRQPFGGTKASGIGREGGTWSYEVFLEP
                     KNVCVSLGSHPIAHWGAA"
BASE COUNT          395 a          712 c          751 g          370 t
ORIGIN      
        1 gccttcgggg tgcttggtga tggtcagctg gttgacgccc atcgcggcga gcagctcgcg
       61 atggcgcgcc ggcatggcga ttcttccctt gccgtcgagc gtcagcgccg cagggccttg
      121 aaacacgata ttcgccacaa aaccccacca aaatgcactt tgtgccactc tagcccatcg
      181 gttcgggccg gtcaactcgg caggatgtca aaaaatcaat ggaatcaaag acttagacca
      241 actttgaaac gagtgcttgc acaaaaatat cgttaagaat gaaagacttg cgcgggtcag
      301 tgaaagcttc gtctgaagtg atgcgaaccc gatcactcgt aaacaccgag ccgggaaagg
      361 tcacaacgtc ggcgccatcg ccaaattgcg cacgaactgc gaccgcaaga gccgcgacac
      421 ccgtcacgcg gccaagcacg aggcttcagg cgaagcgaaa cgcgatcgac ccgagcggcc
      481 cgtagtcgat atggaagttg tcgcctcgca gcgcgttcgt cggtcgcgtg aacgacccgc
      541 cgagcacgat gtcgcccgcg ttcagctgct cgtcgtacgg cgcgatcttg ttggcgagcc
      601 acgccacgcc ggtggctgga tggttgagga ccgcggcggc gagcccggtt tcctcgatca
      661 caccgttctt gtagagcatc gcgccgaccc agcgcaggtc gacctcggtg gggcgcaccg
      721 ggcgcccgcc ggtgatgatg ccggcgcaag cggcgaagtc ggagatcgtg tcgtagacct
      781 tgcgcatcgc cttggtctcg cggtcgaact gctcgacgcg cgcgtcgatg atctcgaccg
      841 ccggggtgac gtactcggtg gccgagagca cctcgaagag cgtgacaccc gggcccttga
      901 ggggcctgcc cagcacgaac gcgagttcga cctcgacgcg cggggcgatg aagcgttcga
      961 acggaatgtc gccgccctgc tcgaagaaca tgtcgtccat caacggcgcg tagtcgggct
     1021 cggtgatctg cgaggcctgc tgcatggcgc gcgaggtgag cccgatcttg cggccgcgaa
     1081 tgaagcgccc gtcggcgatc tcgagccgca cccattcgcg ctggatggcg tagccgtcct
     1141 cgatcgtcat cgccggatgc gccttggaga tgtggcgcaa gggggtgcgt gacttgcgcg
     1201 cctcgtagag ctggcgggcg agcgcctcga tcgtgtcctg gggcaacatg gtctcaggcc
     1261 ttcctgaagc gcgcgtgcag gttgttgtgt ttccaggtgc cagcttcgct gaactcaccg
     1321 acctcgagcg aaagcgccag acccaagcgc tcgtagagtt ctgcgaagtg cgccttcatg
     1381 acctcgaaca acgcgtcgcc ggtggcacgc agcgttgcat cggcgcggcc ggcgccgacc
     1441 ttcagcgccg catgcacata ggctgcgtcg gaagcgccgt ccgcgatgca ccaggcgtcg
     1501 gcggcaaagc cgcgcacccg aatcgcgccg gtcggataga cctgcctgcc gtcgacccgc
     1561 tgggcggcga ggcaggcagc gagcctggca cagagcccgg ggacgtcgcc gctggccgag
     1621 aggtttgccg aatagtcgag agtcaggtgc ggcatgcggc ctccagatgt cgatgcagaa
     1681 gggacgacgc tcaggccgcg ccccaatgcg caatgggatg gctgccgaga ctcacgcaca
     1741 cattcttcgg ctcgaggaag acctcgtagc tccaggtgcc gccttcgcgg ccgatgcccg
     1801 aggccttggt gccgccgaat ggctggcgca ggtcgcgcac gttctggctg ttgacgaagc
     1861 acatgccggc ctcaatcgcg gccgcgacgc ggtgcgcacg cccgaggttc tcggtccaga
     1921 cgtagctgga cagtccgtag gcgatgtcgt tggcgatgcg gaccgcatcg gcctcgtcct
     1981 cgaacgggat caggcatgcg accgggccga agatctcctc ctgggcgatg cgcatgcggt
     2041 tgtcgacgtc cgcgaatacg gtgggtcgca cgtagttgcc cttggtgaat gcgggggcga
     2101 gctcgggggc ctcgacgccg ccgcacaaga ggctcgcgcc ctcgcgcgca ccgagttcga
     2161 tgtagccgcg cacccgaatc gcgccggtcg gatagacctg cctgccgtcg acccgctggg
     2221 cggcgagg
//
LOCUS       DASVHM010000281         1733 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1247462, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000281 DASVHM010000000
VERSION     DASVHM010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1247462"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VF308_05360"
     CDS             complement(<1..276)
                     /locus_tag="VF308_05360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013543984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7436115.1"
                     /translation="MPPADFDLFIIGAGSAGVRAARLAAQSGARVAVAESAALGGTCV
                     NLGCIPKKLYSFAAHYAESFEEAAGFGWSHAAPAFDWSTLKANRAREI"
     gene            complement(404..676)
                     /locus_tag="VF308_05365"
     CDS             complement(404..676)
                     /locus_tag="VF308_05365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004196059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436116.1"
                     /translation="MSMKKSDLDKNLGMKIGGKMKGAAIPARFAQEAGAALDKREQRR
                     RDAAAGLVPFACKLPAELVRQLHDRAAAHAGGINGLMADVLAKGLG"
     gene            754..1305
                     /locus_tag="VF308_05370"
     CDS             754..1305
                     /locus_tag="VF308_05370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007882143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeQ family protein"
                     /protein_id="HEX7436117.1"
                     /translation="MALKATIFKAQLQLADMDRGVYADHAVTLARHPSETDERMMVRL
                     LVFALNVPADANHGALEFAKGLWDPDEPELWLKDLTGQIVHWIEVGQPDERRLMKASG
                     RAERVTVVSYSQSTPIWWAGIATKITRARNIAAWQIAAHEAQALAGLARRSMQLQVSV
                     QDGTAWVGDGERSVEISPVRLNP"
     gene            1392..1667
                     /locus_tag="VF308_05375"
     CDS             1392..1667
                     /locus_tag="VF308_05375"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX7436118.1"
                     /translation="MPIPIRHLPESSRFEATVEGHLCVAEYRLADGVMLITHAEVAPS
                     LEGRGIAGELIQAALDHARAHGLKVRPLCSYARAYMRRHPETLALQA"
BASE COUNT          273 a          618 c          573 g          269 t
ORIGIN      
        1 gatctcgcgg gcgcgattcg ccttcagcgt cgaccagtcg aacgcaggcg cggcgtgcga
       61 ccagccgaag ccggccgcct cctcgaagct ctcggcgtag tgcgccgcga agctgtagag
      121 cttcttcgga atgcagccga ggttgacgca ggtgccgccg agtgccgcac tttcggccac
      181 cgcgactctg gcgccgctct gcgccgcgag ccgggccgcg cgcaccccgg cgctgccggc
      241 gccgatgatg aacaggtcga agtctgcagg tggcatgaag gctccaggcc gatcgcgagg
      301 atcgtgcgcc gcaatgatgc accgggttca cggaccccgt gcgattgggg ccaacgccag
      361 actgggaacc ggcccggccc cgcgacttag gaggccgtgc gcctcagccg aggcccttgg
      421 ccagcacgtc agccatcaac ccattgattc cgcccgcgtg ggcggcggct cgatcatgga
      481 gttgccggac gagttcggcc gggagcttgc aggcgaacgg cacgaggccg gccgcggcat
      541 cgcgccggcg ctgctcgcgc ttgtcgagcg cggcgcccgc ctcctgcgcg aagcgcgcgg
      601 gtatcgctgc gcccttcatc ttgccgccga tcttcatgcc gaggttcttg tcgagatccg
      661 acttcttcat gctcatggga atgctcttgg ctgcatcgaa gcggcgattg tcgcgggtct
      721 gctctaatcg cgcctccctt cggctcttcc ctcatggcac tcaaggccac catcttcaaa
      781 gcccagctgc agctcgccga catggaccgc ggcgtctatg ccgaccacgc cgtgacgctc
      841 gcccgccacc cgtcggaaac cgacgagcgc atgatggtgc gactcctcgt gttcgccttg
      901 aacgtgcccg ccgacgcgaa ccacggcgcg ctcgagttcg ccaagggcct ctgggatccg
      961 gacgagcccg agctctggct gaaggacctc accggccaga tcgtgcactg gatcgaggtc
     1021 ggccagcccg acgaacggcg cctgatgaag gcaagcggcc gggccgagcg cgtcaccgtg
     1081 gtgagctaca gccagagcac accgatctgg tgggccggca tcgcgactaa gatcacgcgc
     1141 gcgcgcaaca tcgcggcgtg gcagatcgcc gcccacgagg cccaagcgct ggccggactc
     1201 gccaggcgca gcatgcaact gcaggtgagc gtgcaggatg gcacggcctg ggtcggggat
     1261 ggcgagcgct cggtcgagat cagcccggtg cgcctgaacc cctgaaagcc cgcgagcgag
     1321 accccatgcc gcgcaaggtg cgaggggtgg tccagaatcg cgactcgatc cgattgcccg
     1381 cccgttgcgc catgccgatc ccgattcgac atcttcccga gtcctcccgt ttcgaggcca
     1441 ccgtcgaggg ccatctctgc gtggccgaat accgcctcgc cgacggcgtg atgctgatca
     1501 cccatgccga agtggcgccc agcctggaag gacgcggcat cgccggtgaa ttgatccagg
     1561 ccgcgcttga tcacgcccgg gcgcacgggc tcaaggtccg gccgctctgt tcctatgcgc
     1621 gcgcctacat gcggcggcat cccgaaaccc tcgccttgca ggcctgaagc gtgcaggccg
     1681 gccgcgtggc cccgacccgc cccgacccgc aagaggtgct cgacttctgg ttc
//
LOCUS       DASVHM010000282         1532 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1320698, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000282 DASVHM010000000
VERSION     DASVHM010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1532
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1320698"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(222..866)
                     /locus_tag="VF308_05380"
     CDS             complement(222..866)
                     /locus_tag="VF308_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007854567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEX7436119.1"
                     /translation="MKPALSPTGRERRALVAATLLGAVALGWPRLARAGAQVEEPLAD
                     SVRSVLSAAIANRAPPRPSFNTIDERLVHLRWLGDMSERLKKRTAEHITRVEFLETLW
                     YESTRAGLEPSLLLGLVQVESGFRKYAISVAGARGYTQVMPFWARLIGEGNSSRLFHM
                     QTNLRFGCVILRHYLDLEHGDMFLALGRYNGSRGHPEYPNAVFGARKAWEPRPG"
     gene            complement(863..>1532)
                     /locus_tag="VF308_05385"
     CDS             complement(863..>1532)
                     /locus_tag="VF308_05385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008116324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HEX7436120.1"
                     /translation="TVAAMSDFVCGANQGGHHFTGVNWGRDLPEPDLVADIRDVVAGD
                     PSPDGRGVLAIQRGIEVGHVFLLGTKYSEPMSAAYLDENGKSQLLVMGCYGIGITRIL
                     GAAIEQNHDARGMIWPDALAPFRLVICPIGYDRSAGVRAAADALHDELDGLGIDVMLD
                     DRGERPGAMFADWELIGAPHRIVLSERGLKDGQIEYQGRRESGPTAVPLLEASAFLKA
                     TLRA"
BASE COUNT          265 a          511 c          519 g          237 t
ORIGIN      
        1 tcgaggctcc tacaagggca ccgcaaggca gatccccgac tctagctaga gcgaggcagg
       61 cccgcgacga atcgatgaag tgctggtaac caatccgcgg atatgagtct gattcatcgt
      121 cgctgcaacg ctcgtgtcgc atcacccaat cgatcccaac acacacgcac caaaagctat
      181 gcgctaacgc gattgacagc ggcgaccata tgaggagcct gtcagccggg ccggggctcc
      241 caggccttgc gcgcaccgaa taccgcattc ggatattccg gatggccgcg actgccgttg
      301 tagcggccga gcgccaggaa catgtcgccg tgctccaggt cgaggtagtg gcgcaggatc
      361 acgcaaccga agcgcaggtt ggtctgcatg tgaaagagcc ggctcgaatt gccctcgccg
      421 atgaggcgtg cccagaaagg catcacctgc gtatagccgc gcgcaccggc gacgctgatg
      481 gcgtacttgc gaaagccgct ctcgacctgc acgaggccca ggagcaacga gggctcgagt
      541 ccggcgcgcg tgctttcgta ccagagcgtc tcgaggaact cgacgcgggt gatgtgctcg
      601 gccgtgcgct tcttcagccg ctcgctcatg tcgccgagcc agcgcaggtg gacgaggcgc
      661 tcgtcgatcg tgttgaagga gggccggggc ggcgctcgat tggcgatcgc tgcggaaagc
      721 accgagcgca ccgagtcggc gagcggctcc tcgacctgcg cgccggcacg cgccagccgc
      781 ggccagccga gcgcgaccgc gccgagcagc gtcgccgcca cgagcgcgcg tcgttctctc
      841 ccggtcgggg agagggccgg cttcatgcgc ggagcgtggc cttcaggaag gccgacgcct
      901 cgaggagcgg caccgcggtc ggcccggatt cgcgccgacc ctggtattcg atctggccgt
      961 ccttcaggcc gcgctcggac agcacgatcc gatgcggcgc gccgatcagt tcccaatcgg
     1021 cgaacatcgc gcccggacgc tcgccgcgat cgtcgagcat gacgtcgatg ccgagcccgt
     1081 cgagctcgtc gtgcaacgca tcggcggccg cgcgcacccc ggccgaacgg tcgtagccga
     1141 tcgggcagat gacgagcctg aacggcgcga gcgcgtccgg ccagatcatt ccgcgcgcat
     1201 cgtggttctg ttcgatcgcg gcgccgagga ttcgggtgat gccgatgccg tagcagccca
     1261 tcacgaggag ctgcgacttg ccgttctcgt cgaggtacgc ggcactcatc ggttcgctgt
     1321 atttcgtacc gagcaggaac acgtggccga cttcgatgcc gcgctggatc gccagcacgc
     1381 cgcggccgtc tggtgaagga tcaccggcaa cgacgtcgcg gatgtcggcc acgaggtccg
     1441 gctcgggcag atcgcggccc cagttgacgc cggtgaagtg gtggccaccc tggttcgccc
     1501 cgcagacgaa atcgctcatc gcggcgacgg tg
//
LOCUS       DASVHM010000283         3928 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_525661, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000283 DASVHM010000000
VERSION     DASVHM010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3928
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_525661"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1283)
                     /locus_tag="VF308_05390"
     CDS             complement(<1..1283)
                     /locus_tag="VF308_05390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor region1.1
                     domain-containing protein"
                     /protein_id="HEX7436121.1"
                     /translation="MTAKQTAPAKATQAPASAKAAKVAHEHIKKTARPANKPAAKVVE
                     TAKGKSGRKPKPDEKAKKADGTDVDLSDLEADLEGEVEAEGADSETKVKAKPLRMKVS
                     RAKERALMREFGLDETALTEEEVAKRRQELKTLIKMGKTRGFLTHQEINDHLPEKLVD
                     HEILEAIVSMLNDMGIAVYEQAPDAATLLIAGGGATTATEEEAEEAAEAALSTVDSEF
                     GRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLQAMMYAISASPTTIAEILSYAE
                     RIGSGEMKISEAVDGFVSEDEADDYVAEEDVDFFDEEDDDDGNGGSKALTKKLEELKA
                     AALVKFAALRINFDKMRKAFEKDGYQSPAYNRAQQGISAELMTIRFTVKTIEKLCPIL
                     RSQVDDVRRYERELRKILVDKCGMPQEYFIKNFPP"
     gene            complement(1655..3538)
                     /gene="dnaG"
                     /locus_tag="VF308_05395"
     CDS             complement(1655..3538)
                     /gene="dnaG"
                     /locus_tag="VF308_05395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEX7436122.1"
                     /translation="MIPPAFIQELLARVDIVDVVGRQLQLKKSGINFSGLCPFHAEKS
                     PSFTVTPTKQFYHCFGCGAHGDAIRFLIEQNGMTFVDAVKDLAQQVGLKVPDDDASPE
                     DRERAAAQKQRRATLSDVLAKAAEHYRRQLKASPRAIGYLKNRSVTGEIAARFGLGYA
                     PEGWRTLASVFPSYDDPLLEESGMVIVHEADNGDEAQRKRYDRFRDRIMFPIRSVQGD
                     IIGFGGRILDRGEPKYLNSPETPVFSKGRELYGLHEARTAVRQRGYALVVEGYMDVVA
                     LAQAGFGNAVATLGTACTAEHVQKLFRFTDSVVFSFDGDAAGRRAANRALEASLAHAT
                     DTRSIRFLFLPAEHDPDSFVRERGPEAFESLIAAAVPLSRQLLEAASDGCDLETAEGR
                     ARLVAQARPFIGQLPEGMLRGQIVDALAAAARVGADELRQQFGGARPEPERRWVPPGS
                     FGRQAPMPAPGGASTPRQRSPRRPLSPMATSLDRAVWLMIHRADLWDQLGHEAHALLT
                     EQPPPHGAFFSWLDRLIHDQGALAPAALMAELHAETAPPALSQLYTRVGAFHDMPVGD
                     EARTEIDVIVDRLRLGAAQSELELLAGSQGLSEAAKARQRELIERQRQLKDRLSRPSV
                     AGA"
     gene            complement(3611..>3928)
                     /locus_tag="VF308_05400"
     CDS             complement(3611..>3928)
                     /locus_tag="VF308_05400"
                     /inference="COORDINATES: protein motif:HMM:NF013014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H-NS histone family protein"
                     /protein_id="HEX7436123.1"
                     /translation="EGNPVASLHELLAQKEALDREIERTKKQERADAISKVRTLMSEY
                     GLSASDLSARTPAKPKGGSGKKVAAKYRNASTGESWSGRGLQPKWLKAALAAGRKLGD
                     FAV"
BASE COUNT          552 a         1286 c         1337 g          753 t
ORIGIN      
        1 ttgggcggga agttcttgat gaagtattcc tgcggcatgc cgcacttgtc gaccaggatc
       61 ttgcgcagct cgcgctcgta gcggcgcaca tcgtcgacct gcgagcgcag gatcgggcag
      121 agcttttcga tcgtcttgac cgtgaagcgg atcgtcatca gttcagcgct gatgccctgc
      181 tgcgcgcggt tgtaggccgg cgactggtag ccgtccttct cgaacgcctt tcgcatcttg
      241 tcgaaattga tgcgcagggc ggcgaacttg acgagcgcgg cggccttcag ctcctcgagc
      301 ttcttcgtca gcgccttcga gccgccgttg ccgtcgtcgt cgtcttcttc gtcgaagaag
      361 tcgacgtctt cctcggccac gtagtcgtcg gcctcgtcct cggacacgaa gccgtcgacg
      421 gcctcggaaa tcttcatctc gcccgagccg atgcgctcgg catagctcag gatctccgcg
      481 atcgtggtcg gcgatgcgct gatcgcgtac atcatcgcct gcaggccgcc ttcgatgcgc
      541 ttggcgatct cgatctcgcc ttcgcgcgtc agcagctcca ccgtgcccat ttcgcgcatg
      601 tacatgcgca ccgggtcggt cgtgcgaccg aactccgaat cgaccgtcga aagcgcggcc
      661 tcggccgctt cctcggcttc ttcctcggtc gccgtggtcg cgccgccgcc cgcgatcagc
      721 agcgtcgccg cgtcgggcgc ctgctcgtag acggcgatgc ccatgtcgtt gagcatcgag
      781 acgatggctt cgaggatctc gtggtcgacc agcttctcgg gcaagtggtc gttgatttcc
      841 tggtgtgtca ggaagccgcg cgtcttgccc atcttgatga gcgtcttcag ctcctggcga
      901 cgcttggcga cttcctcttc ggtgagcgcg gtctcgtcga ggccgaactc gcgcatcagc
      961 gcgcgctcct tggcgcgcga caccttcatg cgcagcggct tggccttgac cttggtttcg
     1021 ctgtcggcgc cctcggcctc gacctcgcct tcgaggtcgg cctcgaggtc ggacaagtcg
     1081 acgtcggtgc cgtcggcctt cttcgccttc tcatccggtt tcggcttgcg accgctcttg
     1141 cctttggccg tttcgaccac cttcgcggcc ggcttgttcg ccggcctggc cgtcttcttg
     1201 atgtgctcgt gcgcgacctt tgccgccttc gcggatgcgg gggcctgggt tgctttggcg
     1261 ggggcggtct gctttgcagt catgcaattc ctcgaaatat gatgggctcg ctgcgggaac
     1321 gccctgcact tgaactgcgc acgcggacgt gattttcaag gtcagcacgc gtcggccgga
     1381 cgagccaatg cagcagcgcc ctgccgcggc agccttgatg gcggcgcgct tcgggccgac
     1441 gcacggaggc gagttctgga ggagaactct gggtcagcag cccttgcggg tgtcgggggc
     1501 ctttggaatg gaaccctggg tcagagggtg gccgggggcc ggaggtgctg cttgccacgc
     1561 gccgcgtcac ggaaagcttt taattatcgt caatccaggc catttcgtca aagaagccgt
     1621 tttctgcgat cgggcgcgag cccacccgat cccgtcaggc gccggcaacc gaaggtcgag
     1681 acaagcggtc cttcagctgc cgctggcgtt cgatcaactc gcgctggcgc gccttggccg
     1741 cctccgacag gccctgcgat cccgccagca gttcaagctc gctctgcgcg gctccgaggc
     1801 gcaggcggtc gacgatcacg tcgatctcgg tgcgcgcctc atctccgacc ggcatgtcgt
     1861 gaaacgcgcc gacccgtgtg tagagctggg agagggcagg cggggcggtc tcggcatgga
     1921 gctcggccat caatgcggcc ggggcgagcg cgccctgatc gtggatcagg cggtcgagcc
     1981 aggaaaagaa ggcgccatgc ggcgggggct gttcggtcaa cagggcgtgc gcctcgtggc
     2041 cgagctggtc ccagagatcg gcgcggtgga tcatcagcca gaccgcccga tcgaggctgg
     2101 tcgccatcgg cgagagcggc cggcgcggcg accgctggcg tggcgtcgac gcgccgccgg
     2161 gtgccggcat gggcgcctgg cggccgaagg agccgggtgg cacccagcgc cgttccggct
     2221 ccgggcgggc gccgccgaat tgctggcgca gctcgtcggc gccgacgcgc gcggcggcgg
     2281 caagcgcatc gacgatctgc ccgcgcagca tgccctcggg caactggccg atgaacgggc
     2341 gcgcttgggc gaccagccgg gcccgccctt ctgcggtttc gaggtcgcag ccgtcggaag
     2401 ccgcctccag cagctggcgc gagagcggca cggcggcggc gatcaggctt tcgaacgcct
     2461 ccgggccgcg ctcgcgaacg aacgagtccg ggtcatgttc ggccggcagg aacaggaagc
     2521 ggatgctgcg cgtgtcggtc gcatgcgcga ggctcgcctc gagggcgcgg ttcgcggctc
     2581 tgcgcccggc ggcgtcgccg tcgaagctga agactaccga gtcggtgaag cggaagagct
     2641 tttgcacatg ctcggcggtg caggcggttc cgagcgtcgc cacggcgttg ccaaatccgg
     2701 cctgggccaa tgcgacgacg tccatgtagc cttcgaccac cagcgcatag ccacgctgcc
     2761 gcacggcggt gcgcgcctcg tgcaggccgt agagctcccg gcccttgctg aaaaccggtg
     2821 tttccggcga gttcaggtac ttgggttcgc cgcgatcgag aatgcggccg ccgaacccga
     2881 tgatgtcgcc ctgcaccgag cggatcggaa acatgatgcg gtcgcggaaa cggtcgtagc
     2941 gcttgcgctg cgcttcgtcg ccgttgtccg cttcgtgcac gatgaccatg ccgctttcct
     3001 cgagcagcgg gtcgtcgtag ctggggaaga cgctggccag ggtacgccag ccctcgggtg
     3061 catagccgag cccgaagcgg gcggcgatct cgccggtcac gctacggttc ttcaggtagc
     3121 cgatcgcgcg cgggctcgcc ttgagctggc gccgatagtg ctcggccgcc ttcgcgagga
     3181 catcgctcag cgtggcccgg cgctgcttct gcgcggcggc ccgctcgcgg tcttcgggcg
     3241 aggcgtcgtc gtcagggacc ttcaggccaa cttgctgggc gagatccttg accgcatcga
     3301 cgaacgtcat gccgttctgc tcgatcagga accggatcgc gtcgccgtgg gctccgcaac
     3361 cgaagcagtg atagaactgc ttggtcggcg tgaccgtgaa gctcggcgac ttctcggcgt
     3421 ggaacgggca caggccgctg aagttgatgc cgctcttttt cagctgcaac tgccggccca
     3481 cgacgtcgac gatatcgacg cgcgccagaa gctcctggat gaaggcgggc gggatcacga
     3541 accgagtcta acgtcaggtc gcccagcccc gcgcggcggc gccggtgccg agattcgcgg
     3601 caaacccggg tcaaactgcg aaatcgccga gttttcgacc cgccgccaga gcagctttca
     3661 gccatttcgg ctggagcccg cggccgctcc aggattcacc ggtcgaggca ttccgatatt
     3721 tggcggcgac tttcttgccc gacccgcctt tcggcttcgc cggggtgcgg gcgctgagat
     3781 cggatgcgct caggccatat tcggacatca gcgttcgcac cttgctgatg gcgtcggccc
     3841 gctcctgctt cttggtgcgt tctatttcgc gatcgagggc ttctttttgg gcgagcaatt
     3901 catggagtga ggccacgggg tttccttc
//
LOCUS       DASVHM010000284         2506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_453151, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000284 DASVHM010000000
VERSION     DASVHM010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453151"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..807)
                     /locus_tag="VF308_05405"
     CDS             complement(<1..807)
                     /locus_tag="VF308_05405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtB"
                     /protein_id="HEX7436124.1"
                     /translation="MNFLSLVRPFLLWVGLALAPAVASALTAEQVRAMAIGENDARAA
                     AIAQAAASGDAQAPVFFQALLDGVVKVAGDQVFIVRDDKVHDAATGAEAALPDGADDV
                     INSNRMRREIEGAIASLKLLSPDVAQRALAIKELKDQADESKLPLVEKAYAVETDPKL
                     KAELGLLRAAVLVSSADKGKRLEAARALTESHQPATKTLLLERLKPGVESDDEVRGQL
                     QLALGAIESRLAWGERLGVVFTGLSLGSILLLVALGLAITYGLMGVINMAH"
     gene            complement(918..2177)
                     /gene="urtA"
                     /locus_tag="VF308_05410"
     CDS             complement(918..2177)
                     /gene="urtA"
                     /locus_tag="VF308_05410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011465653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033219 - urea binding [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter substrate-binding protein"
                     /protein_id="HEX7436125.1"
                     /translation="MKRRFALKAACAAIAASGLLLVPAFAADTIKVGILHSLSGTMAI
                     SETVLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKAKQLISQDKVAVMF
                     GCWTSVSRKSVLPVVEELNGLLFYPVQYEGEELSKNVFYTGAAPNQQAIPAVEYLMSK
                     DGGGAKRFVLLGTDYVYPRTTNKILRAFLHSKGVKDTDIDEKYTPFGHSDYQTIVADI
                     KKFAAGGKTAVISTINGDSNVPFYKELGNQGLKATDVPVVAFSVGEEELRGVDTKPLV
                     GHLAAWNYFMSLKNPTNDKFKKEWAAYAKAKKLPGADKPLTNDPMEATYIGIHMWAQA
                     VTKAKSTDTDKVIAAMAGQTFPAPGGFMSTMDMKNHHLHKPVFIGEVTSDGQFNVVWK
                     TPAPIAAKPWSPYIEGNDKKKDEPEKK"
BASE COUNT          387 a          821 c          822 g          476 t
ORIGIN      
        1 gtgcgccatg ttgatcacgc ccatcaggcc ataggtgatc gccaggccga gcgcgaccag
       61 cagcaggatc gatccaaggc tcaggccggt gaagacgaca cccaggcgct cgccccaggc
      121 caggcgcgac tcgatcgcgc cgagcgcgag ctggagctgt ccgcgcacct cgtcgtcgct
      181 ctccacaccc ggcttgaggc gctcgaggag cagcgtcttg gtggccggct ggtggctctc
      241 ggtcagggcc cgggccgctt cgagacgctt gcccttgtcg gccgacgaca ccagcaccgc
      301 cgcgcgcagc aggccgagct cggccttcag cttcggatcg gtctcgaccg cataagcttt
      361 ctcgaccaac ggcagcttcg actcgtcggc ctggtccttc aattccttga tcgccagcgc
      421 gcgttgcgcg acgtcgggcg agagcagctt cagggatgcg atggcgcctt cgatctcgcg
      481 ccgcatccgg ttgctgttga tcacgtcgtc ggcgccgtct ggaagcgcgg cctcggcgcc
      541 cgtcgcggcg tcgtgaacct tgtcgtcgcg aacgatgaag acctggtcgc cggccacctt
      601 gacgacgccg tcgagcaggg cctgaaagaa aacgggggcc tgggcatcgc cgctggccgc
      661 ggcttgggcg atcgcggcag cgcgcgcgtc gttctcgccg atcgccatcg cgcggacctg
      721 ctcggccgtc agggcgctgg ccacggcggg cgcaagcgcg agaccgaccc acagcagaaa
      781 ggggcgcacc agggagagga agttcacgga agaggcctct ctgttgaaac cccgggcacg
      841 gttcggcagg acacccggtg ccctgccgat tcatacgcaa gagagccggc gcgacgaatg
      901 tgcaccggcc tcgggcctta cttcttctcg ggctcgtcct tcttcttgtc gttgccctcg
      961 atgtacgggc tccacggctt ggcggcgatc ggcgccggcg tcttccagac cacgttgaac
     1021 tggccgtcgc tcgtcacttc accgatgaac accggcttgt gcaggtggtg gttcttcatg
     1081 tccatcgtcg acatgaagcc gcccggcgcc gggaaggtct ggccggccat cgccgcgatc
     1141 accttgtcgg tgtcggtgct cttggccttg gtcacggcct gcgcccacat gtggatgcca
     1201 atgtaggtgg cttccatcgg gtcgttggtg agcggcttgt cggcgcccgg cagcttcttc
     1261 gccttcgcgt aggcggccca ttccttcttg aacttgtcgt tggtcgggtt cttcaggctc
     1321 atgaagtagt tccatgccgc caggtgaccc acgagcggct tggtgtcgac gccgcgcagc
     1381 tcctcctcgc cgaccgagaa cgcgacgacg ggcacgtcgg tcgccttcag accctggttg
     1441 ccgagctcct tgtagaacgg cacgttcgag tcgccgttga tcgtcgagat caccgcggtc
     1501 ttgccgccgg cggcgaactt cttgatgtcg gcgacgatgg tctggtagtc gctgtggccg
     1561 aacggcgtgt acttctcgtc gatgtcggtg tccttcacgc ccttgctgtg caggaaggcg
     1621 cgcaggatct tgttggtcgt gcgcggatag acgtagtcgg tgccgagcag cacgaagcgc
     1681 ttagcgccgc cgccgtcctt gctcatcagg tactcgaccg ccggaatcgc ctgctggttc
     1741 ggcgcagcgc cggtgtagaa cacattcttg ctgagctctt caccctcgta ctgcaccggg
     1801 tagaacagca ggccgttcag ctcctcgacg accggcagca ccgacttgcg cgacacgctg
     1861 gtccagcagc cgaacatcac cgcgaccttg tcctggctga tcagctgctt ggccttctcg
     1921 gcgaagagcg gccagttcga ggcggggtcg acgaccacgg gctcgagctt cttgccgagc
     1981 acgccgccct tggcgttgat ctcgtcgatc gtcatcagcg cgacgtcttt gagcaccgtc
     2041 tcggaaatgg ccatcgtgcc cgagagcgag tgcaggatgc cgaccttgat ggtgtcggcc
     2101 gcgaatgcgg ggaccaacag caagcccgac gcggcgatgg ctgcgcaagc ggctttgagc
     2161 gcgaagcgac gtttcatgaa tgaacctccg ggtgtaggtg aagtaggcga gagtgcttct
     2221 cgtcaacgac ccgtgtttgc aaggcctgtg ccaatcgcct gcgcgactct gaacggtgcg
     2281 tcggctgcgt gctggtgcgg ttcgagttgc gtgcgcggtc ccacatcgca ccagcgcaga
     2341 gcgcgctgcc gcaccaactt gggcccaagg cgtgcacgca atcgtggcac cggtcttgct
     2401 cgcgctgcgg ctctggataa gatgctgcgc ctgaccgatg gcgccacatg caaggcctcg
     2461 atggacctga ccccgcgcga aaaggacaaa ctgctgatct tcacgg
//
LOCUS       DASVHM010000285         4243 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1103576, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000285 DASVHM010000000
VERSION     DASVHM010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4243
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1103576"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            28..348
                     /locus_tag="VF308_05415"
     CDS             28..348
                     /locus_tag="VF308_05415"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEX7436126.1"
                     /translation="MTTSYYAIYAIDKPGLAALREALREPHRQYIRAPHADAVETVLG
                     GPLLDDQGRMNGTLLVVRAATREAAERFLAADPYSLAGLFERVELRAWRWGLGEPAAA
                     GTAR"
     gene            379..1323
                     /locus_tag="VF308_05420"
     CDS             379..1323
                     /locus_tag="VF308_05420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEX7436127.1"
                     /translation="MDRFSAIDTFVRVAESQSFAEAARQMRISRSVVTARIQQLETFV
                     GAPLFHRNTRSVRLSELGQTFLRDCAELVGRTNEVVDQMREVTTSPTGRLRVHALPGF
                     VLGHLARVLQEFQTRYPQIVLDMIVNDAAIDPVKEGFDCALQIFPPRSEELISKKLFP
                     VRRVFCASPEYVKRYGTPRLPRDLKGHRIGWYSGYPTRERLAFHGPGPVVSLDLKPVL
                     LTNSVHLLREYALEHAGIVCVPTLVASDAVLSGALKLVLPEHLLSSFWLSVFYPTTVR
                     SSLKLKLFLETLNSSFSGVPPWDQALIDRGLLPPTIME"
     gene            1460..1969
                     /locus_tag="VF308_05425"
     CDS             1460..1969
                     /locus_tag="VF308_05425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyquinol 1,2-dioxygenase"
                     /protein_id="HEX7436128.1"
                     /translation="MTGTPYKTVFGSLDRYEKGGVQIIGDDVKNYAFSNCFEIAGKAK
                     PYEKVVFGQNQIYVLEAIRAEGTSPWYTCAHDEFALSMDGEVEIHLVKLDAEQTVPDT
                     EHNGAVLVKGEPRGARMGWIKIRRGHQAMLPKNTAYQFRSRKPAVLVLQTCKGDLSIE
                     RWAEICQTA"
     gene            1998..3005
                     /locus_tag="VF308_05430"
     CDS             1998..3005
                     /locus_tag="VF308_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyquinol 1,2-dioxygenase"
                     /protein_id="HEX7436129.1"
                     /translation="MNASAELAKVIASAPDATLGYKTFTLGSFTFRRDEYFAHIGWKT
                     RDGRPLSHTMDAGNFLRALMRDVAWGFFYGWVNFDHVLGTVNKYTSVDLYAGSYNATM
                     KEAGVDLLENFPTEQIRATFEQMLDDWTNASFDPFSAPQETGSPYGRKNGNNTAKITR
                     ARELAKRCVGMKDDLPLRTDARGAPINRAFADVPQDEPELHPEPGFENEVHAFNLFGF
                     LSRSQVTWNPSFTSVVKYSFMCPTTEEHILPIIHGNDRVEWFFQMCDEIHWDCADKNS
                     GKPLARVIMKAGDMAAMPAYCRHQGYSPKRSMLLVWENDSPTLVYEIQKGESPEVPVK
                     F"
     gene            3082..>4243
                     /locus_tag="VF308_05435"
     CDS             3082..>4243
                     /locus_tag="VF308_05435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX7436130.1"
                     /translation="MRHQLFIDGEFVDAESGETLATLNPHDNSVIAEVALAGRADVDK
                     AVAAAEKAFPAWSRMAAADRGRILLRLAELIEANAEELARLESLDTGHPLRDSRSLDV
                     PRTAACFRYFGGMADKFQGDVVPVEVGFLNYLLREPVGVVGQVVPWNFPLMFTSWKMA
                     PALAAGNCVVMKPAEITPLSSLKIAELMSEAGMPDGVVNIVPGLGSVAGQYIAEHERI
                     AKIAFTGSTATGRGIVTASAGNLKKVQLELGGKGANIVFDDANLAAAVNGSAWAIFHN
                     QGQACIAGSRLVLQEKIADEFLDRFVALASSIRLGNPLDAATEMGPLTSAQHRDRVLG
                     YVAVARQQGGEVLLGGKAPAARELARGCYVEPTIVRAKSYRDRVAQEEVFGPF"
BASE COUNT          731 a         1496 c         1358 g          658 t
ORIGIN      
        1 gcactttgcc gacgggcgga gactccgatg acgacctcct actacgcgat ctacgccatt
       61 gacaagccgg gcctggccgc gctgcgcgaa gccctgcgcg aaccccaccg gcagtacatc
      121 cgcgccccgc acgccgacgc ggtcgagacg gtgctcggcg ggcctctgct cgacgaccag
      181 gggcggatga acggcacgct gctggtggtg cgggcggcga cgcgtgaggc cgccgagcgc
      241 tttctcgccg ccgatcccta cagcctggcg gggctcttcg agagggtcga gctgcgcgcc
      301 tggcgctggg gcctggggga acccgcagcc gccggcacgg cgcgctgagg cgcgcggcga
      361 ctgccgcatt cacagcacat ggaccgcttt tccgcgatcg acaccttcgt acgcgtcgcc
      421 gagtcgcaaa gtttcgccga agcggcgcgg cagatgcgca tttcgcgctc ggtcgtcacg
      481 gcgcggatcc agcagctcga aaccttcgtc ggcgccccgc tctttcatcg caacacgcgc
      541 agcgtgcggc tctccgagct cggccagacc ttcctgcgcg actgcgccga gctcgtcggc
      601 cggaccaacg aagtcgtcga ccagatgcgc gaggtcacga cctcgccgac cgggcgcctg
      661 cgcgtgcacg cgttgccggg cttcgtgctc gggcatctgg cgcgcgtgct gcaggaattc
      721 cagacccgct atccgcagat cgtcctcgac atgatcgtca acgacgccgc gatcgacccg
      781 gtcaaggaag gcttcgactg tgcgctgcag atctttccgc cgcgctcgga ggaactgatt
      841 tcgaagaagc tgttcccggt ccggcgcgtc ttctgcgcat cgccggagta tgtgaaacgg
      901 tacggcacgc cgcggctgcc gcgcgacctg aaaggccacc gcatcgggtg gtattccggc
      961 tatccgacgc gcgagcgcct cgcctttcac ggccccggac cggtcgtttc gctcgacctc
     1021 aagccggtgc tcctgaccaa cagcgtccac ctgctgcgcg aatacgcgct cgaacatgcg
     1081 ggcatcgtct gcgtgccgac cctcgtcgcc tccgacgcgg tgctctccgg ggcactcaag
     1141 ctcgtgctgc ccgagcacct gctgagctcg ttctggctct cggtcttcta cccgaccacg
     1201 gtgcgcagtt cgctcaagct caagctcttc ctcgaaaccc tgaactcgag cttttcgggc
     1261 gtgccgccgt gggaccaggc cctgatcgac cgcggtctgc tgccgccgac gatcatggag
     1321 tagcggaccc ggttccttac gggattaccc cgacgattgt tcgatatccc cgaacaatca
     1381 ggttgtggtc gaccctctac cggccgcgcc cggcgctgcc tagactgctc atcatccgct
     1441 ggacccggga gacgacacca tgacaggcac cccctacaag accgttttcg gatcgctcga
     1501 ccgctatgaa aagggcggcg tgcagatcat cggcgacgat gtgaagaact acgcgttctc
     1561 caactgtttc gagatcgccg gcaaggccaa gccgtacgag aaggtcgtgt tcggccagaa
     1621 ccagatctac gtgctcgagg cgatccgcgc cgagggcacc tcgccctggt acacctgcgc
     1681 gcacgacgaa ttcgccctca gcatggacgg cgaggtcgag atccacctgg tcaagctcga
     1741 cgccgagcag accgtgcccg acaccgagca caacggcgcg gtgctggtga agggcgaacc
     1801 ccggggcgcg cgcatgggct ggatcaagat ccgacgcggc caccaggcga tgctgccgaa
     1861 gaacaccgcc taccagttcc gcagccgcaa acccgcggtc ctggtcctgc agacctgcaa
     1921 gggcgacctc agcatcgagc gctgggccga gatctgccag accgcctgag ccatccgacc
     1981 atccgggaga caccaccatg aacgcatccg cagaactcgc gaaggtcatc gccagcgcgc
     2041 ccgacgcgac gctcggctac aagaccttca cgctcggcag cttcacgttc cgccgcgacg
     2101 agtacttcgc ccacatcggc tggaagacgc gcgacggccg gccgctgtcg cacacgatgg
     2161 acgccggcaa cttcctgcgc gcgctgatgc gcgacgtcgc ctggggcttc ttctacggct
     2221 gggtcaattt cgaccacgtg ctcggaaccg tcaacaagta cacctcggtc gatctctatg
     2281 ccggctcgta caacgcgacg atgaaggagg cgggcgtcga cctgctcgag aactttccga
     2341 ccgagcagat ccgcgcgacc ttcgagcaga tgctcgacga ctggaccaac gcgagcttcg
     2401 acccattctc ggcgccgcag gagaccggtt cgccctacgg ccgcaagaac ggcaacaaca
     2461 ccgcgaagat cacccgggcg cgcgaactcg cgaagcgctg cgtcggcatg aaggacgacc
     2521 tgccgctgcg caccgacgcg cgcggcgccc cgatcaatcg cgccttcgcc gacgtgcccc
     2581 aggacgagcc cgagctgcac cccgagcccg gcttcgagaa cgaggtccac gccttcaacc
     2641 tgttcggctt cctgagccgc tcgcaggtca cctggaaccc gagcttcacg tcggtcgtga
     2701 agtacagctt catgtgcccg acgaccgaag agcacatcct gccgatcatc cacggcaacg
     2761 accgggtcga gtggttcttc cagatgtgcg acgagatcca ctgggactgc gccgacaaga
     2821 acagcggcaa gccgctggcc cgggtgatca tgaaggccgg cgacatggcc gccatgccgg
     2881 cgtactgccg gcatcagggc tacagcccga agcgctcgat gctgctggtc tgggagaacg
     2941 actcgccgac gctcgtctac gagatccaga agggcgagtc gcccgaagtg ccggtcaagt
     3001 tctgagcccg ccggtctctc gccaaggagc tccaccatga atctcgcgga gttgcaggcc
     3061 gcggcaggtc tgcgcacacc gatccgccac cagctcttca tcgacgggga gttcgtcgac
     3121 gccgagtcgg gtgagacgct ggcgacgttg aacccgcacg acaactcggt catcgccgag
     3181 gtcgccctcg ccggccgggc cgacgtcgac aaggcggtcg cggcggcgga gaaggcgttt
     3241 ccggcctgga gccgcatggc ggccgccgac cgcggccgca tcctgctccg gctcgccgag
     3301 ctgatcgaag ccaacgcgga ggaactggcc cgcctcgaat cgctcgacac cggccatcct
     3361 ttgcgcgatt cgcgcagcct cgacgtgccg cgcacggcgg catgctttcg ctacttcggc
     3421 ggcatggccg acaagttcca gggcgacgtc gtgccggtcg aggtcggctt cctgaactac
     3481 ctgctgcgcg agccggtcgg cgtcgtcggc caggtcgtgc cgtggaactt cccgctcatg
     3541 ttcacaagct ggaagatggc cccggcgctg gccgccggca attgcgtcgt gatgaagccg
     3601 gccgagatca cgccgctctc gagcctgaag atcgccgagc tgatgagcga ggccggcatg
     3661 cccgacggcg tcgtcaacat cgtgccgggt ctcgggagcg tcgccggcca gtacatcgcc
     3721 gagcacgagc ggatcgcgaa gatcgccttc accggatcga ccgcgaccgg acggggcatc
     3781 gtgactgctt ccgccggcaa cctgaagaag gtgcagctcg aactcggcgg caagggcgcc
     3841 aacatcgtct tcgacgacgc gaacctcgcg gcggcagtga acggctcggc ctgggccatc
     3901 ttccacaacc agggccaggc ctgcatcgcc ggttcgcgcc tcgtgctgca ggagaagatc
     3961 gccgacgagt tcctcgacag gttcgtcgcg ctggcttcgt cgatcaggct cggcaacccg
     4021 ctcgatgcgg cgaccgaaat ggggccgctc acgagcgcgc agcaccgcga ccgcgtgctc
     4081 ggctacgtcg ccgtagcgcg ccaacagggt ggcgaggtgc tgctcggcgg caaggcgccg
     4141 gcggcgcgcg aactggcgcg cggctgctat gtcgaaccga cgatcgtgcg ggccaagagc
     4201 taccgcgacc gtgtcgccca ggaagaggtc ttcggcccgt tcg
//
LOCUS       DASVHM010000286         3519 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_960093, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000286 DASVHM010000000
VERSION     DASVHM010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3519
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_960093"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1545
                     /locus_tag="VF308_05440"
     CDS             <1..1545
                     /locus_tag="VF308_05440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013800412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HEX7436131.1"
                     /translation="GYLTLDRAAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGL
                     HPRDNQVLLGALKNLSDKGNTLVVVEHDEDTIRAADHIIDIGPGAGKRGGRLVAEGSA
                     TELSAHPDSVTGRFLAHPLVHPLSPRRQVIAGAGPIASRARAGALDEALAWLEIRGAS
                     LHNLRQLDVRVPLRRLVAVTGVSGSGKSTLARDVLLANVQAAVAQRATRAGRDAIASG
                     KATAWIGCTGVAGFETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFAETLEARA
                     RGYAPARFSFNTGEGRCPACEGQGVQTIAMSFLPDVKVPCDVCHGQRFNAETLAVSWR
                     GKSIGEVLKLEVDEAVEFFAPMPKISHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRLK
                     LVTELSKVRDDITKRGNKAPHTLYVLDEPTVGLHMADVERLIHVLHRLVDAGHSVIVI
                     EHDLDVIAEADWVIDLGPEGGVKGGGVVAATTPEALVDCAASHTGAALQPVLARSHAA
                     PEAAAA"
     gene            1963..3039
                     /gene="hppD"
                     /locus_tag="VF308_05445"
     CDS             1963..3039
                     /gene="hppD"
                     /locus_tag="VF308_05445"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017875996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003868 - 4-hydroxyphenylpyruvate
                     dioxygenase activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HEX7436132.1"
                     /translation="MTELFDNPMGLMGFEFVEFASPTPNLLEPVFEKMGFTLVATHRS
                     KRVALYRQGAINFIVNSEPASAAAYFAAEHGPSACGLAFRVKDAHVAYRRALDLGAQP
                     IEIPTGPMELRLPAIKGIGGAPLYLIDRFEEGKSIYDIDFHFVDGVDPHPVGHGLRIV
                     DHLTHNVYRGRMAYWARFYEHLFNFRELRFFDIKGEYTGLTSKAMTAPDGKIRIPLNE
                     ESSRGAGQIEEFLMQFNGEGIQHIALLTDDLVATVDRLRAAGVPLMAAPPGAYYRMLD
                     QRIPGHGEDAARLQARGILLDGTAEGGNRRLLLQIFSQAVFGPVFFEFIQRKGDEGFG
                     EGNFKALFESLERDQIERGVLKTA"
     gene            complement(3061..>3519)
                     /locus_tag="VF308_05450"
     CDS             complement(3061..>3519)
                     /locus_tag="VF308_05450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006158532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HEX7436133.1"
                     /translation="PPFWRMALRGNHLADDVPVDRWQICRFTPPSHVLIDVGVAHAGN
                     GGYLADPKFKAASIVVDFITPESDTSIWYFWGMARNFNIRDQGLTDMIRNGQRTIFSE
                     DLAMLESQQRNLNEQPNRHLMRLNIDMGGFESRRILERLVAEERNDLLKA"
BASE COUNT          562 a         1229 c         1180 g          548 t
ORIGIN      
        1 ggctacctga ccctcgaccg cgccgcgccg acgctgtccg gcggcgaggc gcagcgcatc
       61 cgactggccg cgcagctcgg cagcaacctg cagggcgtct gctacgtgct cgacgagccg
      121 acgatcggcc tgcatccgcg cgacaaccag gtcctgctcg gcgcgctgaa gaacctcagc
      181 gacaagggca acacgttggt cgtcgtcgag cacgacgaag acacgatccg cgccgcggat
      241 cacatcatcg acatcggccc tggcgccggc aagcgcggcg gccggctggt cgccgaaggc
      301 agcgcgaccg agctctcggc gcaccccgat tcggtgactg ggcgcttcct tgcccatccg
      361 ctggtgcatc cgctcagccc gcgccggcag gtgatcgccg gcgccggccc gatcgcctcg
      421 cgggcgcgcg ccggcgcact cgacgaggcg ctcgcctggc tcgaaatccg cggcgcctcg
      481 ctgcataacc tgcgccagct cgacgtgcgc gtgccactgc gccgcctcgt cgccgtgacc
      541 ggcgtcagcg ggtccggcaa gtcgaccctg gcgcgcgacg tgttgctcgc gaacgtgcag
      601 gcggccgtcg cgcagcgcgc gacccgggcg ggccgcgacg cgatcgcgag cggcaaggcg
      661 accgcctgga tcggttgcac gggggtcgcc ggcttcgaga cgatagaccg cgtgctcgag
      721 gtcgaccaga cgccgatcgg caagacgccc cgctcatgtc ctgccaccta catcggcttc
      781 tgggacacga tcaggaagct cttcgccgaa accctggagg cacgggcgcg aggctatgcg
      841 ccggcgcgct tcagcttcaa caccggcgag ggccgctgcc cggcctgcga agggcagggc
      901 gtgcagacga tcgcgatgag cttcctgccc gacgtgaagg tgccctgcga cgtgtgtcac
      961 ggccagcgct tcaacgccga aacgctggcc gtcagctggc gcggcaagag catcggcgag
     1021 gtgctgaagc tagaagtcga cgaggccgtc gagttcttcg ccccgatgcc gaagatctcg
     1081 catcccttgc agttgctcaa ggacgtgggc ctgggctacc tgacgctcgg ccagccctcg
     1141 ccgacgctgt cgggcggcga ggcgcagcgc ctcaagctcg tcaccgaact gagcaaggtc
     1201 cgcgacgaca tcaccaagcg cggaaacaag gcgccgcaca ccctctatgt gctcgacgag
     1261 ccgacggtcg gcctgcacat ggccgacgtc gagcggctga tccatgtcct gcaccggctc
     1321 gtcgacgccg gccacagcgt gatcgtgatc gagcacgatc tcgacgtgat cgccgaggcc
     1381 gactgggtca tcgacctcgg gcccgagggc ggcgtcaagg gcggcggcgt cgtcgccgcg
     1441 accacgcccg aggcgctcgt cgattgcgcg gcgagccaca ccggcgcggc gctgcagccg
     1501 gtgctcgccc gcagtcatgc tgcgcccgaa gcggccgcgg cctgaagtgc aatactttcg
     1561 ctcggaccgg gaacgctgcg ccaagctcgt caagaagacc gacatcggga tcgactgagt
     1621 cgcatggatg gaagggcact gggatgacgc tccttcagat aattcttggg tttggcatcc
     1681 aggcgcgcag aggcgcgcgg ccggctccgc gccactgcgg cggttgccgc ttggcggcga
     1741 ctgccctgcg ctgctcgctc cgcggggcga cttcgacaac tcggccctgg gtacagggcc
     1801 tcagacacgt cgccgtcgtc gcggagtacc gctccatccc cgctgcgctg ctcggcgccg
     1861 cagaggcgct gcgcccgccg cccgcccacg gctttgcgcg ctccgtcact ggtgcaatgt
     1921 ttcataagtc gcgagccagg caaagcctga tggaagagtg acatgaccga actcttcgac
     1981 aacccgatgg gcctgatggg gttcgagttc gtcgagttcg cgtcgcccac gccgaacctg
     2041 ctcgagccgg tgttcgagaa gatgggcttc acgctggtgg cgacgcatcg ctcgaagcgg
     2101 gtcgcgctgt accgccaggg cgccatcaac ttcatcgtca acagcgagcc ggcgagcgcg
     2161 gcggcctact tcgccgccga gcacggcccc tcggcctgcg gcctcgcctt tcgcgtgaag
     2221 gatgcgcacg tcgcctaccg gcgcgcgctc gacctcggcg cgcagccgat cgagattccg
     2281 accgggccga tggagctgcg cctgccggcg atcaagggca tcggcggcgc gccgctctac
     2341 ctgatcgacc gcttcgagga aggcaagtcg atctacgaca tcgacttcca tttcgtcgac
     2401 ggcgtcgatc cgcatccggt aggtcacggc ctgaggatcg tcgaccacct gacccacaac
     2461 gtctaccgcg gccgcatggc gtactgggcc cgcttctacg agcacctgtt caacttccgc
     2521 gaactgcgct tcttcgacat caagggcgag tacaccggcc tcacctcgaa ggcgatgacg
     2581 gccccggacg gcaagatccg gattccgctg aacgaggaat cctcgcgcgg cgcgggccag
     2641 atcgaggagt tcctcatgca gttcaacggc gaaggcatcc agcacatcgc gctgctgacc
     2701 gatgacctcg tcgcgaccgt cgaccgcctg cgtgcggccg gcgtaccgtt gatggcggcg
     2761 ccgccgggcg cgtactaccg catgctcgac cagcgcatcc ccggccacgg cgaggatgcg
     2821 gcccggctgc aggcgcgcgg catcctgctc gatggcaccg ccgaaggcgg caaccggcgc
     2881 ctcctcctgc agatcttctc gcaggcggtg ttcgggccgg tgttcttcga gttcattcag
     2941 cgcaagggcg acgaaggctt cggcgaaggc aacttcaagg ccctgttcga atcgctcgag
     3001 cgcgaccaga tcgagcgcgg tgtgctgaag accgcgtagt tccgcggcgg cgcgccgcgg
     3061 tcacgccttc agcaggtcgt tacgttcctc ggccaccaga cgctcgagga tgcgtcgcga
     3121 ttcgaagccg cccatgtcga tgttgagccg catcaggtgc cggttcggct gctcgttcag
     3181 gttgcgttgc tgggattcga gcatcgccag gtcctcgctg aagatcgtcc tctggccgtt
     3241 gcggatcatg tcggtgagcc cctggtcccg gatgttgaag ttgcgcgcca tgccccagaa
     3301 gtaccagatc gacgtgtcgg actcgggcgt gatgaaatcg acgacgatgc tggcggcctt
     3361 gaacttcggg tcggcgagat agccgccgtt gccggcgtgc gccaccccga cgtcgatcag
     3421 cacatggctc ggcggcgtga agcggcaaat ctgccatcga tcgaccggca cgtcgtcggc
     3481 caagtggttg ccacgcagcg ccatgcgcca gaacggcgg
//
LOCUS       DASVHM010000287         5483 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1248090, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000287 DASVHM010000000
VERSION     DASVHM010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5483
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1248090"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1067
                     /locus_tag="VF308_05455"
     CDS             <1..1067
                     /locus_tag="VF308_05455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MltA domain-containing protein"
                     /protein_id="HEX7436134.1"
                     /translation="PAPGTPESAGLAAPPSLHARSRWVPAQWSDLPGWDSDRSAELWV
                     AFQRGCARPQPAWAATCAHARADAPNGMNDAATRAWLRERLQPFRVESPEGQGEGLIT
                     GYFEPLVAASRMSHKGFRIPLYAPPDDLATRHPYWTRQQIDTVAAAQPALKGRELAYV
                     GDPLDALLLQVQGSGRLKLTEADGSRRLVRVTFAGHNDQPYRSVGRWLVEQGELKLEQ
                     ASWPAIRDWAARHPERVNELVWSNPRFVFFREEPLPDPELGPKGAQAVPLTPGRSIAV
                     DPQSIPYGTIAWLDTTEPLSNTPLRRAVMAQDTGSAISGAVRADYFWGWGAEAEAQAG
                     RMKQPLRMWGLWPKGTPPSR"
     gene            1243..1938
                     /locus_tag="VF308_05460"
     CDS             1243..1938
                     /locus_tag="VF308_05460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020701496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436135.1"
                     /translation="MFKPLCLAALTLIAPGAWADAPITEAEARLIAAGMPVVRYARRH
                     DLPVDIVVQPDATPEASPIAMGIKDGRCKLVLSMRGNPGATALLASVPPGLYDAVAEA
                     VFAHEIGHCWRYVQGKWNALPAGFADASEDADDEADVELVSLRRAMRETRREEAFADL
                     VGLAWTRRAHPQQYAAVRVWFEGFRIDAAQGEHHDTGAWLRLAREPSAFDAAGGLFRP
                     AQALWERGLRAQD"
     gene            1970..2758
                     /locus_tag="VF308_05465"
     CDS             1970..2758
                     /locus_tag="VF308_05465"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX7436136.1"
                     /translation="MHSTSARDPGRTIDWSRTSGDYAAHRPGPPLRLYDMLALLGVGL
                     PGQRLLDLGTGTGLVARAFARRGARVCGTDIAAGQIETARAEARRESLDIDFQVAPAD
                     ACPYPAATFDVVSASQCWMYFDPERATAEVKRVLKPSGTLVTTHFSWLPQLDAVARAS
                     EELVLKFNPAWRGAHWPGAIAAEPAWSVGRATVHAMFWFDIAVPFTRASWRGRMRACR
                     GVGASLGAAEVAAFDAEHEALLGRIVANEFSVLHRVDAHLLQPI"
     gene            2956..3402
                     /gene="msrB"
                     /locus_tag="VF308_05470"
     CDS             2956..3402
                     /gene="msrB"
                     /locus_tag="VF308_05470"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009664749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HEX7436137.1"
                     /translation="MGPKIARAQGPTPALPKIEPLRLSDAEWKKRLTPDQYAVLRQEG
                     TERPGTSALNHEKRKGRFHCAGCDLPLFSADTKFESGTGWPSFYAALPGAVGTKTDLK
                     LILPRTEYHCARCDGHQGHVFDDGPPPTGKRYCNNGVALNFVAASA"
     gene            3399..4046
                     /gene="msrA"
                     /locus_tag="VF308_05475"
     CDS             3399..4046
                     /gene="msrA"
                     /locus_tag="VF308_05475"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009664748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEX7436138.1"
                     /translation="MKPALLARRLFGVALFIAACGVALAQTAAPSASAQAPATAKAVF
                     AGGCFWCVESDFDKVPGVLSTTSGYTGGTVPNPTYEQVSGKHTGHAEAVEIVFDPRKV
                     SYEQLVEHYWRTIDPTTKDRQFCDAGSPYRTAIFAQDATQLKIAAASKTALEKSKPFK
                     EPIVTEVVMGGPFYPAEEYHQDYYRKNPVRYNYYRLSCGRDARVKELWGSQAASH"
     gene            complement(4080..5363)
                     /locus_tag="VF308_05480"
     CDS             complement(4080..5363)
                     /locus_tag="VF308_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007871599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HEX7436139.1"
                     /translation="MSKSARRPFRHRIPAFLRHVGPGVVTGAADDDPSGIATYTQAGA
                     QFGIGVLWTVFLTLPFMVAIQLVSARIGRQSGRGIAANLRKHTPRPFLYAIVALLLVA
                     NTINIAADTAAMGEALQLVVGGAAHFHAVLFGLVTALLQVFVPYRRLAPILKWLTLSL
                     FVYVIAAFTVEIPWGRVAHALLVPHIEASSAFWMMIVAVFGTTISPYLFFWQASQEVE
                     EMRLRGLVAGQDSAATTKRAVRRMRLDTIVGMVFSNGIAFFVMLMGAVVLHDGGITDV
                     RTAAQAAQALRPLAGDFAFALFAAGIITTGLLAVPVLASSAAYAVAEALGWREGLERN
                     WREAKGFYAIIVIATVVGTALDFSPIDPMKALYWSAVINGVVAVPIMVAMMVLAGKPQ
                     VMGPLTVRRKTRALGWGAVVVMAAAVLMMGLDLLR"
BASE COUNT          890 a         1967 c         1880 g          746 t
ORIGIN      
        1 gtccggcgcc aggcacaccc gagtcggccg gccttgccgc accgccgagc ctccacgccc
       61 gctcgcgctg ggtccccgca cagtggagcg acctgcccgg ctgggacagc gatcgcagcg
      121 ccgagctgtg ggtggcgttc cagcgtggct gcgctcgccc gcagccggcc tgggccgcga
      181 cctgtgcgca cgcccgcgcc gacgcaccca acggcatgaa cgatgcggcc acacgcgcct
      241 ggttgcgaga gcgcctgcag ccgtttcgcg tcgaatcgcc cgagggccag ggcgagggcc
      301 tgatcaccgg ctacttcgag ccgctggtcg cggcgtcgcg gatgtcgcac aagggctttc
      361 gcattccgct ctacgcgccc ccggacgatc tcgcgacgcg gcacccctac tggacgcgcc
      421 agcagatcga caccgtcgcg gccgcgcagc ccgcgttgaa ggggcgcgag ctcgcctacg
      481 tgggcgaccc gctcgacgcg ctgctcctgc aggtccaggg ctcggggcgc ctcaagctca
      541 ccgaggccga cggcagccgc cggctggtgc gggtcacctt cgcgggccac aacgatcagc
      601 cgtaccgatc ggtcggccgc tggctcgtcg agcagggcga actcaagctc gaacaggcct
      661 cgtggccagc gatccgggat tgggccgcgc gccaccccga gcgggtcaac gaactggtgt
      721 ggagcaaccc gcgcttcgtc ttctttcgcg aggagccgct gcccgatccc gaactcgggc
      781 cgaagggcgc acaggccgta ccactgaccc cggggcgctc gatcgcggtc gacccgcaaa
      841 gcatcccgta cggcaccatc gcctggctcg acacgaccga gccgctctcg aacacgccgc
      901 tgcgccgcgc cgtgatggct caggacacgg gcagcgcgat cagcggcgcg gtccgcgcgg
      961 actacttctg gggctggggc gccgaggccg aggcccaggc cggccggatg aagcagccgc
     1021 tgcgcatgtg ggggctctgg ccgaagggga ccccgccatc gcgttgaggg gccgcggcag
     1081 cgcgacgctg cgttgccacc gattgcgtgc gaaaagccac gcgcggcgcg accggcgcga
     1141 cgaaacaatt ttcgtgccgg catcgacctt gcttttcagg gctttcggcg aggcgccgca
     1201 ggcgtccgct cgcaagggag ttccttcgat gaaggggtgt ccgtgttcaa gccgctttgc
     1261 ctcgccgcgc tcacgctgat tgcacccggc gcgtgggccg atgccccgat caccgaagcg
     1321 gaagcgcgcc tgatcgccgc agggatgccg gtggtccgtt acgcacgccg acatgacctc
     1381 ccggtcgata tcgtggtcca gccggacgcc acgcccgagg cctcgccgat cgcgatgggc
     1441 atcaaggacg ggcgctgcaa gctcgttctc tcgatgcgcg gcaacccggg tgccacggca
     1501 ctcctcgcga gcgtgccgcc gggcctctac gacgccgtgg ccgaagcggt gttcgcacac
     1561 gagatcggcc actgctggcg ctacgtgcag gggaaatgga acgcgctgcc ggctggcttc
     1621 gcggacgcgt ccgaggacgc agacgacgaa gccgacgtcg aactcgtttc gctccggcgt
     1681 gccatgcggg aaacgcggcg cgaagaagcc ttcgccgatc tcgtcggcct cgcctggacc
     1741 cggcgcgcgc atccgcagca gtacgcagcg gtgcgagtct ggttcgaggg tttccgcatc
     1801 gacgcggcac agggggagca tcacgacacg ggggcctggt tgcgcctggc gcgcgaaccg
     1861 tccgcgttcg acgccgcggg cggtctcttc cgaccggccc aggcgctttg ggaacgcggc
     1921 ctgcgcgccc aggattgagg ctcccgtccg cggcgcttac gatgccgcca tgcactcaac
     1981 atcggcccgc gacccgggcc gcacgatcga ctggagccgc acatcgggcg actatgcggc
     2041 gcaccggccg ggccccccac tgcggctcta cgacatgctg gcgctgctgg gtgtcgggct
     2101 gcccggccag cgcctgctcg acctcggcac cggcacaggc ctcgtcgcgc gcgcattcgc
     2161 gcggcgcggc gcgcgggtct gtggcaccga catcgcagcg gggcagatcg agacggcacg
     2221 cgccgaagcg cggcgcgaaa gtctcgacat cgactttcag gtggcgccgg ccgacgcctg
     2281 cccgtatccc gccgcgacct tcgacgtcgt cagcgcgagc caatgctgga tgtacttcga
     2341 cccggagcgc gcgacggccg aagtcaagcg cgtcctcaag ccgagcggca cgctggtcac
     2401 gacccatttc agctggctgc cccaactcga cgcggtggcg cgcgcgagcg aggagctggt
     2461 cctgaagttc aatccggcct ggcgcggcgc gcactggccg ggtgcgattg cggccgagcc
     2521 ggcctggtcg gtcggccgcg ccacggtgca cgcgatgttc tggttcgata tcgccgtgcc
     2581 attcacccgc gcaagctggc gcgggcggat gcgcgcctgt cgcggcgtcg gcgccagcct
     2641 cggcgccgcc gaagtcgcag cattcgatgc cgaacacgag gccctgctcg gacgcatcgt
     2701 ggcaaacgaa ttcagcgtgc tgcaccgcgt cgacgcgcat ctcctgcaac cgatctgacg
     2761 ccgcccgtgc aggtatgctg tcgcgttgcg cgcggccgcc cgttgaactc gctccggcgc
     2821 gacgcgtcga atcgcggata aaggcgcgaa ccgggacgaa aggttctcgt tcgtcgtccg
     2881 accaaccgcc gtcagtccat ttcggagtca gccatgacac gacgccaact tctcgccctg
     2941 ctctcggcca tcggcatggg gccgaaaatc gcccgggcgc aagggccgac gccggcgctg
     3001 ccgaaaatcg aaccgctgcg cctgtccgac gccgaatgga aaaagcgcct gacgccggac
     3061 cagtacgcgg tgctgcgcca ggaaggcacc gagcggcccg gcaccagcgc gctcaaccac
     3121 gagaagcgca agggccggtt ccattgcgcc ggttgcgacc tgccgctctt ttcggccgac
     3181 accaaattcg aaagcggcac cggctggccg agcttctacg cggcgctccc cggtgcggtc
     3241 ggcaccaaga ccgacctgaa gctgatcctg ccgcgcaccg agtaccactg cgcgcgctgc
     3301 gacggccacc agggccacgt cttcgacgac gggccgccgc cgaccggaaa acgctactgc
     3361 aacaatggcg tcgccctcaa cttcgtggcg gcctcggcat gaaaccggcc ctgctggcgc
     3421 gacgcctgtt cggcgtcgcc ttgttcatcg cggcatgcgg cgtcgcgctg gcgcagaccg
     3481 cggcgccctc cgcttcggcg caggcgcccg ccactgcgaa agcggtgttc gccggcggct
     3541 gcttctggtg tgtggaatcc gatttcgaca aggtccccgg cgtgctttcg acgacctcgg
     3601 gctacaccgg cggcaccgtg ccgaacccga cctacgagca ggtctcgggc aagcacacgg
     3661 gtcacgccga agcggtcgag atcgtcttcg acccgcgcaa ggtgagctac gaacaactcg
     3721 tggagcacta ctggcgcacc atcgacccga ccaccaagga ccgccagttc tgcgatgccg
     3781 gaagccccta tcgaaccgcc atcttcgcgc aggacgcgac gcagctgaag atcgccgcgg
     3841 cctcgaagac ggcgctcgag aagagcaagc ctttcaagga gccgatcgtc accgaggtgg
     3901 tcatgggcgg gccgttctat ccggccgagg agtaccacca ggattactac cggaagaacc
     3961 cggtgcgcta caactactat cgcctcagct gcggccgcga cgcgcgcgtc aaggagctct
     4021 ggggcagcca ggcggccagc cactgagcca ccccgcgcca acgccggcac gcggcgcgat
     4081 cagcgcagca ggtcgaggcc catcatcagc accgccgcgg ccatcacgac gacggcgccc
     4141 cagccgaggg cacgggtctt gcgccgcacc gtgagcggcc ccatcacctg gggcttgccg
     4201 gccagcacca tcatcgccac catgatcggc accgcgacca cgccgttgat cacggcgctc
     4261 cagtagagcg ccttcatcgg atcgatcggc gagaagtcga gcgcggtgcc gacgacggtc
     4321 gcgatcacga tgatggcgta gaagcccttg gcctcgcgcc agttgcgctc gaggccctcg
     4381 cgccagccga gcgcctcggc caccgcatag gcggccgacg aggcgagcac cggcaccgcg
     4441 agcaggccgg tcgtgatgat gccggcggcg aacagcgcga aggcgaagtc gccggcgagc
     4501 ggacgcagcg cctgcgcggc ctgcgctgcc gtccgcacgt cggtgatgcc gccgtcgtgc
     4561 agcacgacgg cgcccatcag catcacgaaa aacgcgatgc cgttcgaaaa caccatcccc
     4621 acgatcgtgt ccaggcgcat gcgccggacc gcgcgcttcg tcgtggccgc actgtcctgg
     4681 cccgcgacga ggccgcgcag ccgcatttcc tcgacctcct gcgaggcctg ccagaaaaag
     4741 agatacggcg aaatcgtggt gccgaacacc gccacgatca tcatccagaa ggccgaactc
     4801 gcctcgatgt gcggcacgag cagggcgtgg gcgacgcggc cccacggaat ctcgaccgtg
     4861 aaggccgcga tcacgtagac gaagaggctc agggtcagcc acttgaggat cggcgcgagc
     4921 cggcggtacg gcacgaagac ctgcagcaat gcggtgacga ggccgaacag aacggcatgg
     4981 aagtgcgcgg cgccgccgac cacgagctgc aacgcctcgc ccatcgcggc ggtgtcggcg
     5041 gcgatgttga tcgtgttggc gaccagcagc agggcgacga tggcgtagag gaaaggccgc
     5101 ggcgtgtgct tgcgcaggtt ggcggcgatg ccccggccgg actggcgccc gatccgggcg
     5161 ctgacgagct ggatcgcgac catgaacggc agggtcagga acaccgtcca cagcacgccg
     5221 atgccgaact gcgcaccggc ctgggtatag gtggcgatgc ccgacggatc gtcgtcggcc
     5281 gcgccggtca cgacgcccgg gccgacatgg cgcaggaaag ccgggatgcg gtgccggaat
     5341 gggcggcgcg cagacttcga caaggcgggc tctccgggtt ggaggtttgg gccgggcgac
     5401 gctaacacgg cgcccgaacc cccgtcttcg cgccggcccg gcccgcctac ttcttcgcgc
     5461 tcaggtgggt gagcggcaag gcc
//
LOCUS       DASVHM010000288         7138 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1321376, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000288 DASVHM010000000
VERSION     DASVHM010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7138
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1321376"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..586
                     /locus_tag="VF308_05485"
     CDS             <1..586
                     /locus_tag="VF308_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019657366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX7436140.1"
                     /translation="YVLLRTAQDLLDLPGGASAINVTVFDLWSAEVIAQRITARVGLE
                     ADSWIATNAQFFSAVQAQKTSNTTIRFFVGLSVAFGIASVLVVSVVQKSREIGILRAM
                     GISRGQILRVFLLQGGLVGLSGSIGGSAIGIAALVLWQRYARNPDGTPLFPLTIEPSL
                     FATSLLLATLTGLVAAFAPALRAARLDPVVAIRA"
     gene            579..1262
                     /locus_tag="VF308_05490"
     CDS             579..1262
                     /locus_tag="VF308_05490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019657365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436141.1"
                     /translation="MPEPVVHLRGVRKAFNVGLPIETEVLHGIDLTLDRGEFCAVMGP
                     SGSGKSTLLNIVGLLDRPTSGAVSICGEETIGLDDRALTRLRGHNIGFVFQYHYLLSA
                     FTALENVMMPLLGDAGFPDEDMARRAAELLDSVGLTKWRDNLAGNMSGGQQQRVAVAR
                     ALAMNPPLLLADEPTGNLDSKSADGVFELLRRVNREHGTAILFVTHNAALAARCDKII
                     QVVDGLLGV"
     gene            complement(1248..2951)
                     /locus_tag="VF308_05495"
     CDS             complement(1248..2951)
                     /locus_tag="VF308_05495"
                     /inference="COORDINATES: protein motif:HMM:NF013109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HEX7436142.1"
                     /translation="MVRSVRDGSGAEATPSGPPSVLTVPASRWRDLGAGLCVAGLLIP
                     EAVAYAGLAHLPAVHALTATLIGLAIYAVFGGSRFAIVAPTSSTATLAAAAVLSVPAA
                     AGASSPVAYTQALLALVLLAGVVLMLLAWARQGQLSAFVSRPVLRGFAFALAITIVIK
                     QLPDALGFVLPREAGSDPLHVLLFALLHVQEWHGASVAVALSAGLLVVGLKRWPQLPA
                     SMLVIALAIVAAHGLDLRSLGVAEVGAIERPAVHLGWPDLPPDEWLRMGELASGMVVL
                     IFAESWGSMRSLALAHGDTLDANRELLVLGACNVGSALLQGIAVGSGFSATSANAAAG
                     ANSRWAGVAALGVIAAALAFALPALHLLPRPVLAVAVIGALWHALSARPLLTVWRMNR
                     DRLLVVAAVAAVLLFGVLDGMLAAIALSLLAALKRFSQPVVHELGELESSRDFVVLEA
                     QPRAAAVPGLLILRPEEPLFFASAERVVAEVMNRVGSRGAVRAVVLSLEESSDLDSTA
                     VECLLELGQRLRGGGRLLVLARVKESVRELLGRWDPQGLGRADRMFWSVADAVQALHA
                     E"
     gene            complement(2932..4131)
                     /locus_tag="VF308_05500"
     CDS             complement(2932..4131)
                     /locus_tag="VF308_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2252 domain-containing protein"
                     /protein_id="HEX7436143.1"
                     /translation="MDVVREIRAYNAGRDPERLALKYRKMHGDAFAFLRGTCHLFYER
                     LPRGGVFKSAPLTWVCGDLHLENFGSYKGDNRLVYFDVNDFDEAALAPASWDLVRLLA
                     SLWVGADSVSISRSEARSLCTVFLDAYASSLALGKAYWVERETAQGLVRTLLDGLRDR
                     PRPRFLDASTRVRGTKRTLRVDGKKALPSAEAQRAAITDFMAGFARAQSDPGFYRVLD
                     VARRIGGTGSLGLDRYVILVQGKGSPDGNYLLDLKQSLPSALAPHLKAGQPRWKTEAH
                     RVVALQRRLQAVSVAFLQPVFVGESPYVLRGLQPSEDRVELDRSRQSMGELGQLVGTM
                     GRIVAWAQLRSSGREGSATADELIDFGQRRKWQESLLGASQDCAAQVRADSATFDAAF
                     DDGAFGA"
     gene            4412..5440
                     /locus_tag="VF308_05505"
     CDS             4412..5440
                     /locus_tag="VF308_05505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426331.1"
                     /note="This protein belongs to the uracil DNA glycosylase
                     superfamily, members of which act in excision repair of
                     DNA. However, it belongs more specifically to UdgX branch,
                     whose founding member was found to bind uracil in DNA
                     (where it does not belong), without cleaving it, appears
                     to promote DNA repair by a pathway involving RecA, rather
                     than base excision; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UdgX family uracil-DNA binding protein"
                     /protein_id="HEX7436144.1"
                     /translation="MQQPDAPHVPDAADMASTARNTVRLANAVDLAGFRRACRKLWAE
                     QIEPDGVDWHTADGAEANRLDAGAAPDRPAPGSAPPLHVPASFMPLCEHVILHSDSDR
                     FDLLYRLLWRLQIEPDLRDNLLDADRVRAQQMAEAVRRELNEAAASGAAPRSLPVLRA
                     ALERCRECPIAEHATRAVPGEGPQRARLMFVGEQPGDQEDLQGRPFVGPAGQLFARAL
                     AELGIDRRDAYVSNAVKHFKFELRGKRRIHKTPAQEEAAACLHWLETEIALVDPQALV
                     ALGATAARQLMGAPIAVTRQRGQWLTRADGRRVLITLHPSALLRMEPEDKDAAYAAWL
                     ADLRRAAS"
     gene            5566..6717
                     /locus_tag="VF308_05510"
     CDS             5566..6717
                     /locus_tag="VF308_05510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019451435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEX7436145.1"
                     /translation="MSTDKSRTGLQLRSLIRASGELELSLVDVAVPDPAADEVVVRVE
                     GAPLNPSDLGLLFGAADIGTATVSGTAAKPVVTARIPDQAMKGMAGRLDQSMPVGNEG
                     AGVVVAAGSSAAARALLGKTVALLGGAMYSQYRCVKAEQCLVLPAGKTPAEGASSFVN
                     PLTALGMVETMRREGHTALVHTAAASNLGQMLNRICIEDKIGLVNIVRSAEQERILKS
                     IGAAHVCNSGSPTFMQDLTDALVATGATIAFDAIGGGKLAGQILSCMEAALNKTATEY
                     SRYGSTTHKQVYIYGGLDTSQTEFSRNFGMTWGMGGWLLFPFLQKIGAASAQKLRERV
                     AAELKTTFASHYSKEISLAEALQLDAIAVYGKRATGAKYLVNPNKGIAT"
     gene            6763..7098
                     /gene="yidD"
                     /locus_tag="VF308_05515"
     CDS             6763..7098
                     /gene="yidD"
                     /locus_tag="VF308_05515"
                     /inference="COORDINATES: protein motif:HMM:TIGR00278.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEX7436146.1"
                     /translation="MLKAGSLALIGAYQRYVSAHKGYCCAYRASTGGRSCSRYAQRAI
                     SRAGLWPGLILLRRRLRACAGAAMALDEALEKSMEEAVFGECAPAVREGRKLCCGSLI
                     GGISNGEDT"
BASE COUNT         1210 a         2510 c         2405 g         1013 t
ORIGIN      
        1 ctacgtgctg ctgcgcacgg cgcaggacct gctcgacctt ccgggcggcg cctcggccat
       61 caacgtgacg gtgttcgatc tctggagcgc ggaagtgatc gcgcagcgca tcacggcgcg
      121 cgtcgggctg gaggccgaca gctggattgc gacgaacgca caattcttct cggcggtgca
      181 ggcgcagaag acctccaaca cgaccatccg cttcttcgtc ggcctgtcgg tcgccttcgg
      241 cattgccagc gtgctggtgg tgtcggtggt gcagaagtcg cgcgagatcg gcatcctgcg
      301 cgcgatgggg atctcgcgcg ggcagatcct gcgcgtgttc ctgctccagg gcggactggt
      361 cgggctgagc ggctcgatcg gcggatcggc catcggcatc gcggcgctcg tgctctggca
      421 gcgctatgcg cgcaatcccg acggcacccc gctcttcccg ctcaccatcg agcccagcct
      481 cttcgcgact tcgctgctgc tcgcgacgct gacggggctg gtcgcggcct tcgcaccggc
      541 cctgcgcgcg gcgcgactcg atccggtggt ggccatccgt gcctgaaccg gtcgttcacc
      601 tgcggggcgt gcgcaaggcc ttcaacgtgg gcctgccgat cgagaccgag gtgctgcacg
      661 gcatcgacct caccctcgat cggggcgagt tctgcgccgt gatggggcca tccggatcgg
      721 gcaagagcac cctgctcaac atcgtcggcc tgctggatcg gccgacgagc ggcgccgtga
      781 gcatctgcgg cgaggaaacc atcggactcg acgaccgcgc gctcacgcgc ctgcgcgggc
      841 acaacatcgg tttcgtgttc cagtaccact acctgctctc ggccttcacg gcgctcgaga
      901 acgtcatgat gcccctgctc ggcgacgccg ggttccccga cgaagacatg gcccggcgcg
      961 ccgcggagct gctcgacagc gtcgggctca cgaaatggcg cgacaacctc gccggcaaca
     1021 tgagcggagg ccagcagcag cgcgtcgcgg tggcacgggc gctggcgatg aatccgcccc
     1081 tgctgctcgc cgacgagccg accggcaacc tcgacagcaa gtccgcggac ggggtgttcg
     1141 agctgctgcg gcgggtcaat cgcgagcacg gcacggccat cctcttcgtg acccacaacg
     1201 ccgcgctggc cgcgcgctgc gacaagatca tccaggtcgt ggacggccta ctcggcgtgt
     1261 agggcctgga ccgcgtcggc aacgctccag aacatccggt cggcccgccc cagcccttgc
     1321 gggtcccagc ggcccagcaa ctcgcgcacc gattccttga cccgtgccag gaccagcaag
     1381 cgcccgccgc cgcgcaggcg ctgacccagc tccagcaggc attcgacagc ggtgctgtcg
     1441 agatcggagc tttcttcgag gctgagaacc acggctctca cggcacctcg actgccgacc
     1501 cggttcatga cttcggcaac cacccgctcc gcgctggcaa agaacaaggg ctcctccggc
     1561 cgcaggatca gcagcccggg cacggcggcg gcacgcggct gggcctcgag gacgacgaag
     1621 tcgcgcgacg actcgagttc gccgagttcg tgcaccaccg gctgactgaa gcgcttcaat
     1681 gccgccagca gcgacagcgc gatcgcggcc agcatgccgt ccaggacgcc gaacagcagc
     1741 acggccgcga ccgccgcgac gacaagcagg cgatctcggt tcatgcgcca gactgtcaac
     1801 agggggcggg ccgacaatgc gtgccacaag gcaccgatga ccgcgacggc cagcaccggc
     1861 cggggcagca ggtgcagggc aggcagagcg aaggcaagcg ccgccgcaat cacgccgagt
     1921 gcagccacgc cggcccagcg actgttggcg ccggcagcgg cgttggccga ggtcgccgaa
     1981 aacccggacc cgacggcgat gccctgcagc agggcggaac cgacgttgca ggcgcccagc
     2041 accagaagtt cccgattcgc atccagcgtg tcgccgtgcg ccagcgccag ggaacgcatg
     2101 ctgccccacg attcggcgaa gatgagcacg accatgccgg aggccagctc gcccatgcgc
     2161 agccattcgt cgggcggcag gtcgggccag ccgaggtgga ctgcggggcg ctcgatggcg
     2221 ccgacttccg ccacgccgag cgatctcagg tcgagcccgt gcgcggcgac gatggccagc
     2281 gcgatgacta gcatcgaggc cggcagctgc ggccagcgct tgagcccgac gaccagcagg
     2341 ccggcgctca gcgcaacggc gacgctggcg ccgtgccatt cctgcacgtg cagcagcgcg
     2401 aacagcagga catgcaacgg gtccgagccg gcttcacgcg gcagcacgaa gccgagggca
     2461 tcgggcagct gcttgatcac gatggtgatg gccagggcga aggcaaatcc gcgcagcacc
     2521 ggccgtgaca cgaacgccga cagctgtccc tgccgggccc acgcgagaag catcaacacg
     2581 accccggcca gcagcaccag ggccagcagg gcctgggtgt aagccactgg gctcgatgca
     2641 cccgcggcag ccggaaccga cagcaccgcg gccgccgcca gggtcgccgt cgaggaggtc
     2701 ggcgcgacga tcgcaaagcg gctgccgccg aacaccgcgt agattgccag cccgatcagc
     2761 gtggcggtca gggcgtggac cgcgggcaga tgggccaggc ccgcataggc cacggcctcg
     2821 gggatcagca gtccggcgac gcagagcccc gcgcccaggt cgcgccagcg cgacgcaggc
     2881 acggtcagca ccgaaggcgg accggagggc gttgcctcgg cgccggaccc gtcacgcacc
     2941 gaacgcacca tcgtcgaagg ccgcgtcgaa ggtggccgaa tccgcgcgaa cctgcgcggc
     3001 gcagtcctgc gaagcgccga gcagactctc ctgccatttc ctgcgctgcc cgaaatcgat
     3061 cagctcgtcg gccgtggccg aaccttcacg accggagctg cgcaactggg cccacgccac
     3121 gatccggccc atcgtgccga cgagctgccc cagctcaccc atcgactgcc tcgagcgatc
     3181 cagctcgacc cggtcttcgg agggctgcag accgcgcagc acatagggac tctcgccgac
     3241 gaacaccggc tgaagaaagg ccacggagac cgcttggagg cggcgctgca gcgccacgac
     3301 gcgatgcgcc tccgtcttcc aacgcggctg cccagctttc aagtgtggcg ccagcgcgga
     3361 cggcagcgat tgcttgagat cgagcagata gtttccgtcc ggcgatccct tgccctgcac
     3421 caggatgaca tagcggtcga ggccgaggct tccggtgccg ccgatgcgac gtgccacgtc
     3481 gaggaccctg tagaagccgg gatcggattg cgcacgggcg aacccggcca tgaaatcggt
     3541 gatcgctgcg cgctgcgcct cggctgaggg aagcgccttc ttgccgtcca cacgcagggt
     3601 tcgtttcgtt cccctgacgc gcgtgctggc gtcgagaaag cgcgggcgcg ggcggtcgcg
     3661 caagccatcg agcagcgttc ggaccagccc ctgcgcggtt tcgcgttcga cccagtaggc
     3721 cttgccgagg gccagcgacg aggcataggc gtcgagaaag accgtgcaga gactgcgcgc
     3781 ttcggagcgg ctgatcgaaa cgctgtcggc cccgacccac aggcttgcga gcaggcgcac
     3841 caggtcccag ctggccgggg ccagggcggc ctcgtcgaag tcgttcacgt cgaagtagac
     3901 gaggcggttg tcccccttgt agctgccgaa attctcgagg tgcaggtcgc cgcagaccca
     3961 ggtcaggggc gccgacttga agacgccgcc gcgcggcagg cgctcataga agagatggca
     4021 cgtgccgcgc aggaacgcga acgcatcccc gtgcatcttg cggtacttga gcgccagacg
     4081 ctcggggtcc cggcccgcgt tgtaggccct gatttcacga accacatcca tcgccccggc
     4141 tcctccggat tgcctgactg tggaatctac ttgcttcgaa gcgagtcggc ggccggcgct
     4201 tgcgtttagc cggcgctctg tcgagaatca ggccgaaacg ggccgatcgg atggcggcca
     4261 atacaaggag gccggcaatg acccttgtcg acttccgggt cagcgatccg gatccgatgg
     4321 cgcggctcga atggggcatc acgggcgttc gacccgacgg cgattgatcg ctacaacgta
     4381 caacgacgct gcggcggtct atgctcgctg catgcagcag cccgacgctc cacacgtgcc
     4441 cgatgcggcc gatatggcga gcacggcgcg aaacacggta aggctggcga atgcggtcga
     4501 cctggccggc tttcgccgcg cctgccgcaa gctctgggcc gagcagatcg agccggatgg
     4561 cgtcgactgg cacaccgcag acggcgccga agcgaaccgg ctcgatgcag gcgccgcgcc
     4621 cgatcgaccg gcaccgggaa gcgccccgcc cttgcacgtt ccggcctcgt tcatgccgct
     4681 ttgcgagcac gtgatcctgc acagcgactc cgaccgcttc gacctgctct atcgattgct
     4741 ctggcgcctg cagatcgagc ccgacctgcg cgacaacctg ctcgatgccg atcgggtccg
     4801 ggcgcagcag atggcagagg cggtgcggcg cgagctgaac gaggcggccg caagcggcgc
     4861 ggcgccgcgc tccctgccgg tcttgcgcgc cgcgctggag cgctgccgag aatgcccgat
     4921 cgccgaacac gcgacccggg cggtgccggg cgaaggcccg caacgcgcgc ggctcatgtt
     4981 cgtcggcgag cagcccggcg atcaggaaga tctgcagggc cggcctttcg tcggcccggc
     5041 cgggcagctg ttcgctcgcg ccctcgccga acttggcatc gatcgccgcg acgcctacgt
     5101 cagcaacgcc gtcaagcact tcaagttcga gctgcgcggc aagcggcgca tccacaagac
     5161 gccggcgcag gaggaagcgg ccgcctgcct gcactggctg gagaccgaga tcgcgctggt
     5221 cgacccgcaa gcgctggtcg cgctcggcgc gaccgcggcg cgccagctca tgggcgcgcc
     5281 gatcgccgtg acgcggcagc ggggccagtg gctgacccgt gccgacggcc ggcgtgtcct
     5341 gatcacgctg cacccgtcgg cgcttctgcg catggagccc gaagacaagg acgccgcgta
     5401 cgcagcctgg ctggccgacc tgcgccgcgc tgcgtcatga gaataggaaa tccaaacgcc
     5461 ctttccccgc cccgtggcga cggggaatgc cgtcctcgtt tctgcggggt agagtgaaat
     5521 atccgagcca gtgtcgattt ccatttctag gcgcaggaga accgcatgag caccgacaag
     5581 tcacgcaccg ggctgcaact tcgctccctg atcagggcca gcggcgaact ggaactctcg
     5641 ctcgtcgacg tcgcggtccc cgaccccgcc gcggacgaag tggtcgtgcg ggtcgaaggc
     5701 gcgcccctca acccttccga cctcgggctg ctgttcggtg ccgccgacat cggcacggct
     5761 accgtgtcgg gcacggccgc caaacccgtg gtcacggccc gcattccgga ccaggcgatg
     5821 aaaggcatgg cgggccgcct cgaccaatcc atgccggtcg gcaacgaagg cgccggcgtg
     5881 gtcgtcgctg cgggttcctc cgcggccgcg cgggccctgc tgggcaagac ggtggccctc
     5941 ctcggcgggg cgatgtattc gcagtaccga tgcgtcaagg ccgagcagtg tctggtgctg
     6001 cccgccggca agacgccggc cgagggcgcc tcgagcttcg tcaacccgct caccgcgctg
     6061 ggcatggtcg agacgatgcg gcgcgagggc cacaccgcgc tcgtgcacac cgcggccgca
     6121 tccaacctcg gccagatgct caaccggatc tgcatcgagg acaagatcgg cctggtgaac
     6181 atcgttcgca gcgcggagca ggaacggatc ctgaaatcca tcggggcggc ccacgtctgc
     6241 aactccggct cgcccacctt catgcaggac ctcaccgacg cgctcgtcgc gaccggcgcc
     6301 acgatcgcct tcgacgccat cggcgggggc aagctcgccg gacagatcct ttcgtgcatg
     6361 gaggcggcgc tcaacaagac cgccacggag tacagccgct acggctcgac gacccacaag
     6421 caggtctaca tctacggcgg cctcgacacg agccagaccg agttcagccg caatttcggc
     6481 atgacctggg ggatgggcgg atggctgctg ttcccgttcc tgcagaagat cggcgccgct
     6541 tcggcgcaaa aactgaggga acgcgtcgcg gcggagctga agaccacctt cgcgagccac
     6601 tactcgaagg aaatttccct ggccgaggcg ctgcagctcg acgcgatcgc cgtctacggc
     6661 aagcgcgcga ccggcgcgaa gtatctcgtc aacccgaaca agggcatcgc cacgtagccg
     6721 atcttccgat cggcgaaagg cccacaccga tagccctttc ccatgctcaa agccggcagc
     6781 ctcgcactca tcggcgccta ccagcgctac gtgtctgcgc acaagggcta ctgctgcgca
     6841 taccgcgcga gcacgggcgg gcggtcgtgc tcgcgctatg cccagcgtgc gatctcgcgc
     6901 gccggcttgt ggcccggcct gatcctgctt cggcgccgcc tgcgcgcctg tgccggcgcg
     6961 gccatggccc tcgacgaggc gctggagaaa tcgatggagg aagccgtctt cggagagtgc
     7021 gcgcccgccg ttcgggaagg tcgaaagctg tgctgcggca gcctcatcgg cggcatctcg
     7081 aacggcgaag acacctagtc ttactgtgtt agttattttg cctctcccag ggccggag
//
LOCUS       DASVHM010000289         3241 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_671164, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000289 DASVHM010000000
VERSION     DASVHM010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3241
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671164"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..408)
                     /locus_tag="VF308_05520"
     CDS             complement(<1..408)
                     /locus_tag="VF308_05520"
                     /inference="COORDINATES: protein motif:HMM:NF024750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Arm DNA-binding domain-containing protein"
                     /protein_id="HEX7436147.1"
                     /translation="MATDKLTEVVVRKAKPGVRPIRMSDGGGMFLALQPTGGKWWRLK
                     YRFGGKEKLLSLGTYPEVSLSEARERRAAARKLLGHGVDPSAARKSLKGSRGDVVAES
                     FEAVAREFHKLKADEWSGPHATRWLERFEKDVFP"
     gene            complement(575..648)
                     /locus_tag="VF308_05525"
     tRNA            complement(575..648)
                     /locus_tag="VF308_05525"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(614..616),aa:Gly,seq:ccc)
     gene            710..1426
                     /gene="trmB"
                     /locus_tag="VF308_05530"
     CDS             710..1426
                     /gene="trmB"
                     /locus_tag="VF308_05530"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011544784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEX7436148.1"
                     /translation="MNESPDPEPESAAPAAPPRIRSFVVRAGRMGPGQARALATLAPR
                     FVIPFTAAPVDFARVFGRAAPLAVEIGFGMGSATAEIAAAAPQVDFVGIEVHPPGVGA
                     LLQRIDERGLENVRIVQHDAVEVLESMIAPGSLAAIHVFFPDPWHKTRHHKRRLIQAP
                     FVRLLASRLAAGATLHCATDWLPYAEQMLAVLAAEPTLVNAAGDGFAPRPPSRPLTKF
                     EQRGLDRGHGVRDLVFTRRA"
     gene            complement(1459..2280)
                     /locus_tag="VF308_05535"
     CDS             complement(1459..2280)
                     /locus_tag="VF308_05535"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011804585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEX7436149.1"
                     /translation="MDPILLVKAALMGIVEGLTEFLPVSSTGHLILAGSLLGFTGDKI
                     KVFEIAIQSGAILAVMIVYRERLASTLAGLGSDARARRFALNVAIAFVPAVILGLLFG
                     KAIKAHLFTPTVVATTFIVGAFIILWAERRQRPPRIDSVDEMRPIDALGVGLCQCFAL
                     VPGTSRSGATIIGGMLLGLSRKAATEFSFFLSIPTLLGAGAYSLWKERALLSAADLPL
                     FLVGLLFSFLAAWLCVRWLLSYVSTHTFVPFAWYRIAFGLVVLATAWSGLVVWQD"
     gene            2375..3028
                     /locus_tag="VF308_05540"
     CDS             2375..3028
                     /locus_tag="VF308_05540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HEX7436150.1"
                     /translation="MNIEQARFNMIEQQIRPWEVLDQGVLSLLSIVKREDFVPPAYRS
                     MAFVDTQVPLPHGQSMLEPKVEARLLQELAVQRHERVLEIGAGSGYMAALLAHKAQHV
                     TTVEIDPDLARMASENLKHAWVLNARVIEADASAGLVVDGPFDVIVLSGSVAEVPRSL
                     LSQLKPGGRLTAIVGQLPVMHAVLMTRGDDAGHATVELFDTVAPRLVGFGEPSRFTF"
     gene            3029..>3241
                     /locus_tag="VF308_05545"
     CDS             3029..>3241
                     /locus_tag="VF308_05545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016447089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436151.1"
                     /translation="MARALAPAMQQLSGPAALALAAAHAADALPIVFLDVRELWEVAT
                     AAIAAPGAKAVIMPMSEIPSRLDELDP"
BASE COUNT          528 a         1168 c         1062 g          483 t
ORIGIN      
        1 cgggaagacg tccttttcga agcgctcgag ccagcgggtc gcgtgcggcc cactccactc
       61 gtcggctttg agtttgtgaa actcccgcgc caccgcctcg aagctctccg cgacgacgtc
      121 gccacgcgag cctttcagtg actttcgagc ggcgctcggg tcaacgccgt gacctaacag
      181 cttgcgagcc gccgcgcgcc gctcgcgcgc ttcgctgagg ctgacttcag ggtaggtgcc
      241 caagctgagc agcttttcct tgccgccaaa ccgatacttc aagcgccacc acttgccacc
      301 cgtcggctgc agcgcgagga acattccgcc cccgtcggac atgcgaattg gacgcacgcc
      361 gggcttcgct tttctcacca caacttcggt aagcttgtca gtggccatct gggggtaacc
      421 gcgagagcag gttgctcact taccaccaaa tctaccccca cttacccccg gtttcaagcg
      481 gattgatccg gattcttgac aaccccgacc tgccagaatt tctccgctac gcccggcaaa
      541 tcccatgcaa ctggactgtt ctggactgtt tcggtggagc gggtgaaggg aatcgaaccc
      601 tcgtatgaag cttgggaagc tgccgttcta ccattgaact acacccgccg gccgcggcga
      661 ttataggcag cgaccctcgc gcggaaacgc tcgcgaaggc cgcgcatcga tgaacgagag
      721 ccccgacccc gagcccgaaa gcgctgcccc agcagcgccg ccgcgcatcc gcagcttcgt
      781 cgtccgcgcc ggccgaatgg ggccgggcca ggcacgcgcg ctggcgacgc tggcgccgcg
      841 cttcgtcatt cccttcaccg cggcaccggt cgacttcgcc cgcgtcttcg gccgcgccgc
      901 gccgctcgcg gtcgagatcg gcttcggcat gggcagcgcg acggccgaga tcgccgcggc
      961 cgcgccgcag gtggacttcg tcggcatcga ggtccatccg cccggcgtcg gcgcgctgct
     1021 gcagcgaatc gacgagaggg ggctcgagaa cgtgcggatc gtccagcacg acgcggtcga
     1081 ggtcctcgag tcgatgatcg cgccggggtc gctcgccgcg atccacgtct tctttcccga
     1141 cccctggcac aagacgcgcc accacaagcg ccgcctcatc caggcaccgt tcgtccgcct
     1201 gctcgcgagc cgactcgccg ccggcgcgac gctgcactgc gcgaccgact ggctgcctta
     1261 cgcggagcag atgctcgccg tgctcgcggc cgagcccacg ctcgtcaacg ccgccggcga
     1321 cggcttcgcg ccgcgtccgc cgtctcggcc gctgaccaag ttcgagcagc gtggtctcga
     1381 ccgcggccac ggcgttcgcg atctcgtctt cacgcggcgg gcctagcagg ctagcgcccg
     1441 ctcgatcggc gcaggcgctc agtcctgcca gacgacgagg ccgctccacg cggtcgcgag
     1501 cacgaccagc ccgaaggcga tccggtacca ggcgaacggc acgaaggtgt gggtcgagac
     1561 gtagctcagc agccagcgaa cgcagagcca cgcggcgagg aacgagaaca agagtccgac
     1621 caggaagagc ggcagatcgg ccgccgacag cagcgcccgc tccttccaca ggctgtacgc
     1681 gccggcgccg agcagcgtcg ggatcgagag gaagaagctg aactcggtgg cggccttgcg
     1741 cgacaggccg agcagcatgc cgccgatgat cgtcgcgccc gaccggctcg ttcccggcac
     1801 gagcgcaaag cactggcaga ggccgacgcc gagcgcgtcg atcggccgca tctcgtcgac
     1861 gctgtcgatg cgcggcggcc gctgccgccg ctcggcccag aggatgatga acgcgccgac
     1921 gatgaaggtc gtcgcgacga cggtcggcgt gaacaggtgc gccttgatcg ccttgccgaa
     1981 cagcagtccc aggatcacgg ccggcacgaa ggcgatcgcg acgttgagcg cgaagcggcg
     2041 cgcccgggcg tcgctgccga ggccggcgag cgtcgaagcg aggcgctcgc ggtagacgat
     2101 catgacggcg aggatcgcgc cgctctggat cgcgatctcg aagaccttga tcttgtcgcc
     2161 ggtgaagccg agcagcgagc cggcgaggat gaggtggccg gtgctcgaga ccggcaagaa
     2221 ctcggtcagg ccttcgacga tccccatgag ggccgccttg acgagcagga tcggatccat
     2281 gccgttctcc atcgacgcaa agcggccgat ggtagcgagc atccccgggg cggcgagaat
     2341 atggggttcg agccgccgca cttcagcctg acccatgaac atcgagcaag cccgcttcaa
     2401 catgatcgag cagcagatcc gcccctggga ggttctcgac cagggcgtcc tctcgctgct
     2461 gtcgatcgtc aagcgcgagg acttcgtccc gcccgcgtat cggtcgatgg ccttcgtcga
     2521 cacccaggtg ccgctgccgc acggccagtc gatgctcgag cccaaggtcg aggcgcgcct
     2581 cctgcaggag ctcgccgtgc agcgccacga gcgcgtcctc gagatcggcg ccggctcagg
     2641 ctacatggcc gccctcctcg cgcacaaggc gcagcacgtg acgacggtcg agatcgaccc
     2701 cgacctcgcc cgcatggcga gcgagaacct caagcacgcc tgggtgctga acgcgcgcgt
     2761 gattgaggca gacgcgtcgg ccggcctcgt cgtcgacggc ccgttcgacg tgatcgtcct
     2821 gtcgggctcg gtcgccgagg taccgcgctc gctgctctcg cagctgaaac cgggcgggcg
     2881 cctcaccgcc atcgtcggcc agctgccggt catgcacgcc gtcctcatga cgcgcggcga
     2941 cgacgccggc cacgcgacgg tcgagctgtt cgacaccgtc gccccgcgcc tggtcggctt
     3001 cggcgagccg agccgcttca cgttctgaat ggcgcgcgcc ctcgcccccg cgatgcagca
     3061 actgtccggg ccggcggcgc tcgccctcgc cgcggcgcac gccgccgacg ctttgccgat
     3121 cgtgttcctc gacgtgaggg agctgtggga agtcgccacc gccgccatcg cagcgcccgg
     3181 cgcaaaggcg gtgatcatgc cgatgtccga aatcccgtcg cggctcgacg agctcgaccc
     3241 g
//
LOCUS       DASVHM010000290         2232 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_308326, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000290 DASVHM010000000
VERSION     DASVHM010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308326"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..2232
                     /locus_tag="VF308_05550"
                     /pseudo
     CDS             1..2232
                     /locus_tag="VF308_05550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011515115.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
BASE COUNT          410 a          789 c          730 g          303 t
ORIGIN      
        1 gcatcctgca gggcatgggc gccgaggtcg tgcacctcgg ccacaaccgc tccgtcgacg
       61 aggtcgtcac cgcggcgttg cacgaagatg cgcacggcat cgcgatcagc tcctaccagg
      121 gcggccatgt cgagtacttc aagtacatgg tcgacatgct gaggagtcgc ggcggcgagc
      181 acatccaggt cttcggcggc ggcggcggcg tgatcgtgcg cgccgagatc accgagctgc
      241 aggactatgg cgtgagtcgc atctacagcc ccgaggacgg ccagcgcatg ggcctggccg
      301 gcatgatcgg cgagatggtc atgcgctgcg accatgacct gtcgccgcac gctccgaaaa
      361 gcgtggccgc gatccagggt ggcgacgagg cccactggcg cgcgcttgca cagctcatca
      421 cggcgctcga gaacgacaag gtttccgacg ctctgaaagc ggccttgcac gccgaggcga
      481 agaaggcgaa gacccctgtg ctgggcatca ccggcacggg cggcgccggc aagtcgagcc
      541 tgaccgacga actgatccgg cgcctgcgcc tcgaccaggg cgaccggttg cgcgtcgccg
      601 tgatctcgat cgacccgagc cgcaggaaga ccggcggcgc cctgctcggc gaccggatcc
      661 gcatgaacgc gatcgggccc tggagcgatg ggccgcgcgt cttcatgcgc agcctggcca
      721 cgcgcgacta cggcagcgag atcagccagg cgctgcccga cgtgctcgcc gcggccaagt
      781 gcgcgggctt cgacctcgtc atcgtcgaaa cgtccggcat cggccagggc gatgccgcga
      841 tcgtgccgct cgtcgacgtg ccgatgtacg tgatgacgcc cgagttcggc gccgcgagcc
      901 agctcgaaaa gatcgacatg ctcgacttcg ccgagttcgt cgcgatcaac aagttcgacc
      961 gcaagggcgc cgccgacgcg ctgcgcgatg tcgccaagca ggtgcagcga aaccgcgccg
     1021 cctggggcac caagcccgac gaaatgccgg tcttcggcac catggccagc cgcttcaacg
     1081 acgatggcgt gaccgcgctc taccaggcgc tcgtgccgcg cctggccgag ctcggtctgg
     1141 atctcggccc cggcacgctg ccggtggcgg cgacccgcca cagcacgcac caggtgccga
     1201 ccgtgccggc cgggcgcgcg cgctacctcg ccgacatcgc cgacaccgtg cgcggctaca
     1261 aggcgcgcgc ccgggcccag tccagactgg cacgcgagat ccagcagctg cgcgcggcgg
     1321 ccgcgatgct caccgtcggc aagcccgaca aggcgcgcgc cgccgaggcc gcgctcgacc
     1381 tcgcgaccgc gcgcgaagaa gctgctcgaa atgtggccgc agatgcaggc cgcctacgcc
     1441 ggcgacgaat acgtcgtgaa gatccgcgac aaggaactgc gcaccgtgct gacccacacg
     1501 acgctctcgg gcagcaagat caggaaggtg gccctcccgc agtacgagga ccacggcgag
     1561 atcctcaagt ggctgatgct cgacaacgtg ccgggcagct tcccctacac cgccggcacg
     1621 ttcgccttca agcgcgaggg cgaagacccg acccgcatgt tcgcgggcga aggcgatgcc
     1681 ttccgcacca acacccgctt caagctgttg agttccggca tgcccgccaa gcgcctctcg
     1741 accgcgttcg attcggtcac cctctacggc aacgacccgg cggagcgccc cgacatctac
     1801 ggcaaggtcg gcaactcggg ggtctcgatc gcgacgctcg aggacatgaa ggtgctctat
     1861 ggcggcttcg acctgacgaa cccggcgact tcggtcagca tgacgatcaa cggcccggcg
     1921 ccgacgatcc tggcgatgtt catggcgacc gcgatcgacc agcagctcga gaaattccag
     1981 gtcgacaacg gccgcgagcc aaccgacgac gaggcccaga agatccgcgc ctgggtcatg
     2041 cagaacgtgc gcggcacggt ccaagccgac atcctcaagg aggaccaggg ccagaacacc
     2101 tgcatcttct cgactgagtt cagcctcaag gtgatgggcg acatcgccga gtacttcgtg
     2161 caccacaagg tgcgcaactt ctactccgtc agcatctcgg gctatcacat cgccgaggcc
     2221 ggcgcgaacc cc
//
LOCUS       DASVHM010000291         4052 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_960412, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000291 DASVHM010000000
VERSION     DASVHM010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_960412"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            278..562
                     /locus_tag="VF308_05555"
     CDS             278..562
                     /locus_tag="VF308_05555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436152.1"
                     /translation="MAIQFLLVTFPEQRAVLADGAGVGFTNHILMLPSDEYEITLDGN
                     ACVPASQDVVLTGTSMVKPMVVTFAPATAAAAVATRSAAASAAKKKNTNA"
     gene            555..2057
                     /locus_tag="VF308_05560"
     CDS             555..2057
                     /locus_tag="VF308_05560"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX7436153.1"
                     /translation="MRSLLVALVALLLVQGCATTRFENTPLEEGHVNVERRAVDVSHL
                     DRPLILVAFSGGGSRAAALGWVVLRDLQKYRYTSSDGTTRSLVDDIAVISSVSGGSVI
                     GAQFALYGAAGLDHFEPEFLALDNTRTLGIEALDPLNWVTSAFTGTSRSDLVEQLLDR
                     ELFGHKTFADLNQAGKPYLILNATDMASGEVFAFTPKRFDDICADLDAQSIASGVAAS
                     AAVPVAFTPIALRNYSAERCAGVPVPSWVSNRLKGAYAPYLNVDAFRLARYANDLRHG
                     PDSFRQIDYVYLLDGGLADNLAVHGLLEALSSPYAAPIVAPPGAQGGAAGTVLQAINS
                     GRVRKVAVIVVNARSDPASKISQTASRPGILGVIGAVTSLPIASASGSVNAQLDSLLS
                     QFNAAGGGAPPGAAGDPQSAGLKVYGIEIDFDQLRPSDPAQRALRDQAKEIPTLWTIT
                     GPHLGVIERAGTTLLHQHPCFQRLLSDLAIQAEFVDVTFARMGCRQAADQ"
     gene            complement(2178..3683)
                     /locus_tag="VF308_05565"
     CDS             complement(2178..3683)
                     /locus_tag="VF308_05565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HEX7436154.1"
                     /translation="MAAASLTLDNSYARELEGFSVPWRPEAAPAPKSLFFNELLAQEL
                     GLDVAAVSGEAGAALFAGNTVPEGAEPIAQVYAGHQFGGFSPQLGDGRAVLLGEVIDR
                     AGRRRDIALKGSGRTPFSRGGDGKAAVGPMLREVLIGEAMHALGIATTRALAVVATGQ
                     PLLRETVLPGAVLTRVAASHIRVGTFQFFAARGDVERVRQLAEYTIARHDPDLVGAPG
                     RFLGLLEHVAERQAALIAQWMNVGFIHGVMNTDNMTLSGETIDYGPCAFVEAYDPAAV
                     FSSIDSQGRYAFGNQPVIAQWNLARLAETLLPLLSDDAEEAAAQATRVIEAFPTVYRR
                     HLLSGQRAKLGLQRVNGADDAADARLADDWLAVLNAGHADFTLAWRGLADAAAGDDAP
                     LRALFADATAPEAWLARWRDRCAREDEGAPASGGAARAECMRRINPWVIPRNHRVEEA
                     LAAASDDSDVGPFDRLFDALRRPYDETAANARYAEAAPSEVTACYRTYCGT"
     gene            3813..>4052
                     /locus_tag="VF308_05570"
     CDS             3813..>4052
                     /locus_tag="VF308_05570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005675064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436155.1"
                     /translation="MAAATLTAEGPSAGPAHPRIPADRAFFGHPAGLGWLSFCELWER
                     FSFYGMQALLVLYLTNYLFLPQNIGQVAGIDALRGL"
BASE COUNT          625 a         1433 c         1378 g          616 t
ORIGIN      
        1 gcgggagttt ggcttcgcgc gatcacgctg tcacagttgc ccgcgcagac atcgagattg
       61 gcctgccagg aagccgccgg tcatgggtac agcagtcggc cagaagcggc ctccggtgac
      121 cggcagctgt cagcgagccg atccggcaaa gactcctcga gttgtccgcc ccgcgcgcct
      181 ccctcacact acgcgcatga aggattcaat cccgaagcga cgcgcgtcga acgccagcca
      241 ggcggagcgg gtcactcacc tcaccgatgg agatgtcatg gccattcaat tcctgctcgt
      301 cacctttcct gagcagcgcg cggtgctggc cgatggcgca ggcgtcggct tcaccaacca
      361 catcctgatg ctgccgagcg acgaatacga gatcacgctc gacggaaacg cctgcgtgcc
      421 ggccagtcag gacgtggtgc tcaccgggac ttccatggtc aagcctatgg tggtcacatt
      481 cgcgccggcc acggcggccg ccgccgtggc gacccgatcg gcagcggcct cggcagcgaa
      541 gaagaagaac acgaatgcgt agcctgctcg tggcgctggt ggccctgctg ctggtgcagg
      601 gctgtgcgac gacgcgcttc gagaacacgc cgctggaaga ggggcacgtg aacgtggagc
      661 gccgcgccgt cgacgtttcg cacctcgacc ggccgttgat cctggtggcg ttctccggcg
      721 gcggctcgcg cgccgcggcg ctcggctggg tcgtcttgcg cgacctgcag aagtaccgct
      781 acacgtccag cgacggcacg acgcgctcgc tggtcgacga catcgcggtc atctcttccg
      841 tctcgggcgg cagcgtcatc ggcgcccagt tcgcactgta cggggccgcc ggcctggacc
      901 actttgagcc cgagtttctc gcgctcgaca acacgcgaac gctcggcatc gaagccctcg
      961 accccttgaa ctgggtgacc tcggccttca ccggcacctc gcgcagcgac ctggtcgagc
     1021 aactgctcga ccgcgagttg ttcggccaca agaccttcgc cgacctgaac caggccggca
     1081 agccctacct catcctgaac gccacggaca tggcttccgg cgaggtgttc gctttcacgc
     1141 cgaagcgctt cgacgacatc tgcgccgacc tcgatgcgca gtcgattgcc tccggtgtcg
     1201 ccgcctccgc ggccgtgccg gtggctttca cgccgatcgc cttgcgcaac tactcggccg
     1261 aacgctgcgc cggcgtgccc gtgccgagct gggtatcgaa ccggctcaag ggcgcctatg
     1321 cgccctacct caacgtcgat gccttcaggc tggcccgcta cgccaacgac ctgcgccatg
     1381 gcccggacag cttccgccag atcgactacg tctacctgct cgatggcggc ctggcggaca
     1441 acctggccgt ccatggcttg ctcgaagccc tgtcttcgcc ctatgccgca cccatcgtcg
     1501 cgcctcccgg cgcgcagggc ggcgcggccg gcacggtgct gcaagcgatc aacagcggcc
     1561 gcgttcgcaa ggttgccgtg atcgtcgtca acgcgcgctc cgacccggcc agcaagatct
     1621 ctcagaccgc gagtcgcccg ggcatcctcg gcgtgattgg tgccgtcacg tcgctgccca
     1681 tcgcctcggc gagcggcagc gtcaacgcgc agctcgattc cctgttgtcg cagttcaacg
     1741 ctgccggagg cggagcgccg cccggtgccg ccggcgaccc gcagtccgca gggctgaagg
     1801 tctacggcat cgagatcgac ttcgaccagc tgcgccccag tgacccggcg caacgcgcac
     1861 tgcgcgacca ggccaaggag ataccgacgc tgtggacgat caccgggccg cacctcggcg
     1921 tgatcgaacg cgccggcact acgctgctgc accagcaccc gtgctttcag cggctgctga
     1981 gcgacctggc gatacaggcc gaatttgtcg acgtgacgtt cgcaaggatg gggtgtcggc
     2041 aggcggcgga tcagtaggcg ggctgaagca gcgacagacc atcgcagcgg gcctcgcgat
     2101 cgccggtctc ggccacaagc cgccgctcac gtccgtcgcc tttcagcctt gccagcaggt
     2161 ctggagcggg ccgcgaatca agtgccgcag tacgtgcgat agcacgcggt gacctcggag
     2221 ggtgctgcct cggcgtaccg ggcgttggcg gcagtctcgt cgtacgggcg ccgcaaggcg
     2281 tcgaacaggc gatcgaacgg gccgacgtca ctgtcgtcgg aggccgcagc gagcgcttcc
     2341 tcgacgcggt ggttgcgcgg gatcacccac gggttgatgc ggcgcatgca ctcggcgcgc
     2401 gcggcgccgc cgctggctgg cgcgccttcg tcctcgcgcg cacatcgatc gcgccagcgc
     2461 gcgagccacg cctcgggcgc ggtcgcgtcg gcgaagaggg cacggagggg cgcgtcatcg
     2521 ccggcggcgg catcggccaa gccgcgccag gcgagcgtga agtcggcgtg gccggcgttc
     2581 agcacggcca gccagtcgtc ggccagccgg gcatcggcgg catcgtcggc tccattcacg
     2641 cgctgaagcc cgagcttcgc gcgctggccg ctcaggaggt ggcgacggta cacggtcggg
     2701 aaggcctcga tgacgcgcgt ggcctgggcc gcagcctcct cggcatcgtc ggagagcaac
     2761 ggcagcagcg tctcggccag gcgcgccagg ttccactggg cgatgacggg ctggttgccg
     2821 aacgcatagc ggccctggct gtcgatagag ctaaataccg ccgccgggtc gtaggcctcg
     2881 acgaaggcgc acggcccgta gtcgatggtc tcgcccgaga gcgtcatgtt gtcggtgttc
     2941 atcacgccgt ggatgaagcc cacgttcatc cactgcgcga tcagcgcggc ctgccgctcc
     3001 gcgacgtgct cgagcagccc aagaaagcgc cccggtgcgc ccacaaggtc ggggtcatgg
     3061 cgcgcgatcg tgtactcggc tagctggcgc acgcgttcca cgtcgccgcg agcggcgaag
     3121 aactggaacg tgccgacgcg aatgtgactg gccgccacgc gcgtgagcac cgcgccggga
     3181 agcaccgtct cacgaagaag cggctgcccc gtggccacga ccgcgagagc gcgtgtggtg
     3241 gcgatgccca gggcgtgcat ggcttcgccg atcagcacct cgcgcagcat cggcccgacg
     3301 gccgcctttc cgtcgccgcc gcgcgagaac ggcgtgcgcc ccgagccctt caaggcgatg
     3361 tcgcggcgcc ggcccgcacg gtcgattacc tcgccgagca gcaccgcgcg cccgtcgccg
     3421 agttgcggcg agaagccgcc gaactggtgg ccggcgtaca cctgcgcgat cggctcggcg
     3481 ccttccggga cggtgttgcc ggcgaagagg gcggcgccgg cttcgccgga gacggcggcg
     3541 acgtcgaggc cgagctcctg cgccagcagc tcgttgaaga agagcgattt cggcgccggc
     3601 gcggcttccg ggcgccaggg cacggagaag ccttcgagct cgcgggcgta ggagttgtcg
     3661 agggtcaagg aggcagcagc catgagcgaa gatccggcgg gcaagccggg agtttgaacg
     3721 ccttcgcgca tcgacgccgg aacagggccg tgcagcatgt gccgccgagt ggaacgctag
     3781 actgcccgcc accgcatcga gaggagccgc acttggccgc agcgacgctc accgccgagg
     3841 gcccgtccgc gggtccggca caccctcgca tccccgccga ccgcgccttc ttcggccacc
     3901 ccgccggcct cggctggctc tcgttctgcg agctgtggga gcggttctcg ttttacggca
     3961 tgcaggcgct gctggtgctc tacctcacca actacctgtt cctgccgcag aacatcggcc
     4021 aggtcgccgg catcgacgcg ctgcgtggcc tc
//
LOCUS       DASVHM010000292         4073 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1321663, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000292 DASVHM010000000
VERSION     DASVHM010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4073
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1321663"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..542
                     /locus_tag="VF308_05575"
     CDS             <1..542
                     /locus_tag="VF308_05575"
                     /inference="COORDINATES: protein motif:HMM:NF020976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HEX7436156.1"
                     /translation="AEQERWLAEGWDSARPWNLLAQQTLMARHSWRDPANGGGVYWTD
                     GWDGYAPARNRLLGAVATRAVPGVVVLGGDVHSNYVADLKADFDDPTSPVVATEFCGT
                     SITSLSLPQARIDAARAFNPHVHYGRGDQRGYMRFRLDAKRLEAQLRVVDRPLDPASG
                     ITTAARFAVDPARPGAVAS"
     gene            complement(606..2444)
                     /locus_tag="VF308_05580"
     CDS             complement(606..2444)
                     /locus_tag="VF308_05580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018005768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OPT/YSL family transporter"
                     /protein_id="HEX7436157.1"
                     /translation="MDRVPAESLEAPRWRWLPAEGGWKYHALLGALGIFVLGPLGGVT
                     ASFMNFSLGFFVGGQVLAGILGSTVTYGYGSEGKHGANYLQTTAASVAGMSAMGVLIQ
                     AMVWVGLPQPPVWQMVLYMLCIGMFGAGVGMLYTPILVDRLQLTFPSGLAVANILRAL
                     TDPVLLRASVRQLGSGIALGIAGGIAAAKVAAVAAIDLSASTFGAGMVVGARIGIPAI
                     VGGVLGMILVPYFVSIGWLQIGDPPRKITFLIALGMIMGAALVDLALILVQAAQRMTR
                     VGVAATGAAPPVVPGSSGEWKRVNTARLWLWVAVWGAGIVATGHMVLGQPVGFLVFAV
                     ALVFVFAMVNGISVGISDSNPISSAFVVSIVLMAALGLKDVGVGLMAGTVLLVSTSVA
                     CDMQQDRSTGWRLGTNRVIQFRYQVAGILMGALLAVGFAELFMSAYPVLKLDQTVMKA
                     GEQPAEWSAAMTYKFVGVLRSLADDKPFQRTAIWLGVGIGFVIEVLRLFVRSRAGYKR
                     FVASGRAGFALDFIVDALLLPSPYALSFGGFVNLHTSLWFGGGGIVASFFNSLPARGS
                     KAGGVASLPSDMSSTSLLGGGLIAGDALAALGLGIAALLMTVLAGS"
     gene            2578..>4073
                     /locus_tag="VF308_05585"
     CDS             2578..>4073
                     /locus_tag="VF308_05585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004627186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphatase/phosphodiesterase
                     family protein"
                     /protein_id="HEX7436158.1"
                     /translation="MRLSFVPLGISVALTGLGACGGSDSTNTPAAPQRTIIMVWDGLR
                     PDSINPTDTPNLYALRQQGVQFADNHSTYPTFTMMNGSSFATGSFPKTSGFYGNTFWA
                     APQAGAAQPIPIGESAGGGNQDYVDPVFTEDYAVLTTLNDYYGGQLLLVKTLFKTAQD
                     AGLKTLALGKSGAAYIQDLNRGGFFVDENAVLPQSLATELQAANFVLPANTPFAYPAG
                     TITLAAANGSPTARAGALTFALPNGLQARDATDSTQGAPEDAANKYMLGLFTQYILPK
                     KLPDLSLIWFRTPDNSEHAYGPGSANYRKALASQDQRLGELQAGLKAAGLDTTTNIIV
                     VSDHGHSNVSGPTQLFPLRAISASTAVTNGVTNALLGLPDPVKGFSVSGDVRSADLLT
                     FAGFKAFDGSGCSTTPMAGIKADGSAVYAVGIDATGALCGAANAKYQAVSATLAAPVA
                     SFKVPASVPATGIVIATNGGSDYFYVPDHDATTVTNLVRFLQSREEFGA"
BASE COUNT          737 a         1459 c         1321 g          556 t
ORIGIN      
        1 gtgccgagca ggagcgttgg ctggccgaag gctgggacag cgcgcggccc tggaacctgc
       61 tcgcccagca gacgctgatg gcgcgccact cctggcgcga cccggcgaac ggtggcggcg
      121 tctactggac cgatggctgg gacggctacg cgccggcgag gaaccgcttg ctcggcgccg
      181 tcgccacgcg cgccgtgccg ggagtcgtcg tcctcggcgg cgacgtgcac agcaactatg
      241 tcgccgacct gaaggccgac ttcgacgatc cgacctcccc ggtcgtcgcg accgagttct
      301 gcggcacctc gatcaccagc ctgtcgctgc cgcaggcgcg catcgacgcg gcgcgcgcct
      361 tcaatccgca cgtccactac ggccgcggcg accagcgcgg ttacatgcgc ttccggctcg
      421 atgcgaaacg cctcgaggcg caattgcgcg tcgtcgaccg accgctcgat ccggcgagcg
      481 ggatcacgac ggcggcccgt ttcgcagtcg acccggcccg gcccggagcg gtcgcctcct
      541 gaggagcatc tgccgcttgc ggcggcccgg ccgagaccgc gcgggctctc gcgagcagca
      601 ccgcctcaag agcccgcaag cacggtcatc aacaacgccg cgatgccgag gccgagcgcg
      661 gcgagcgcgt cgcccgcgat caggccgccg ccgagcagag aggtgctgct catgtccgat
      721 ggcaaggacg caacgccccc ggccttcgac ccgcgagcgg gcagcgaatt gaagaagctc
      781 gcgacgatgc cgccgccgcc gaaccacagc gacgtgtgca ggttcacgaa gccgccgaac
      841 gagagcgcat agggcgaagg cagcagcagc gcatcgacga tgaaatcgag cgcaaagcca
      901 gcgcgcccgc tcgcgacgaa gcgcttgtag ccggcgcgcg atcgcacgaa cagacgcagc
      961 acctcgatga cgaagccgat gccgactccc agccagatcg ccgtgcgctg gaaaggcttg
     1021 tcgtcggcga ggctgcgcag cacgccgacg aacttgtagg tcatcgcggc gctccactcc
     1081 gcgggctgtt caccggcctt catcaccgtc tggtcgagct tgagcaccgg gtaagcggac
     1141 atgaagagct ccgcgaaccc gaccgcgagc aacgcgccca tcaggatgcc ggcgacctgg
     1201 tagcggaact ggatcacgcg gttcgtgccg aggcgccatc cggtcgagcg gtcctgctgc
     1261 atgtcgcagg ccacgctcgt cgaaaccagc agcacggtgc cggccatcag gccgacaccg
     1321 acatccttga ggccgagcgc cgccatcagc acgatggaga cgacaaaggc cgacgagatc
     1381 gggttcgagt cgctgatgcc gaccgagatc ccgttgacca tcgcgaacac gaagacgagc
     1441 gcgaccgcga agacgagaaa gccaaccggt tggccgagca ccatgtgccc cgtggcgacg
     1501 atgcccgcgc cccagaccgc cacccagagc cacaggcgcg cggtgttgac gcgcttccac
     1561 tcgccgctcg aacccggcac gactggaggt gccgcgcctg ttgccgcgac gccaacccgc
     1621 gtcatgcgct gcgcggcctg caccaagatc agcgccaggt cgacgagcgc ggcgcccatg
     1681 atcatgccga gcgcgatcag gaacgtgatt ttgcgcggcg ggtcgccgat ctggagccag
     1741 ccgatggaga cgaagtaagg cacgaggatc atgccgagca cgccaccgac gatggcagga
     1801 atgccgattc gcgcgccgac caccatgccg gcgccgaagg tcgacgcgga caggtcgatc
     1861 gccgcgacgg cggcgacctt ggcggccgcg atgccgcccg cgatgccgag cgcgatgccg
     1921 ctgccgagtt gccgcaccga cgcgcgcagg agcaccggat cggtcaacgc gcgcaggatg
     1981 ttcgcgacgg cgagccccga gggaaacgtg agctgcaacc gatcgaccag gatcggcgtg
     2041 tacagcatgc cgaccccggc gccgaacatg ccgatgcaga gcatgtagag caccatctgc
     2101 cagaccggcg gctgcggcag cccgacccag accatcgcct ggatcaggac gcccatcgcg
     2161 ctcatgccgg cgaccgaagc ggctgtcgtc tgcaggtagt tggcgccgtg cttgccttcg
     2221 ctgccgtagc cgtaggtcac ggtcgagccg aggatgcccg ccagcacctg cccgccgacg
     2281 aagaagccga gcgagaagtt catgaacgag gcggtcacgc cgcccagcgg tcccagcacg
     2341 aagatgccga gtgcgcccag gagggcgtgg tatttccagc cgccttcggc cggcagccag
     2401 cgccagcgcg gtgcttcgag cgactcggca ggaacccgat ccatgaacgt ctccgaacgg
     2461 cgggcacccg aatcgcaagc cgcggacatc agcttgtcac aaggcctctc tattgtggct
     2521 cacagtttct gcgcggtcgc gcccttcgaa atcacttcac agatcggatc agctctcatg
     2581 cgtctttcat tcgtgcctct cggcatctcg gtggcgctga ccggcctcgg cgcctgcggt
     2641 ggttccgact cgaccaacac acccgcagcg ccgcagcgca ccatcatcat ggtctgggac
     2701 ggcctgcgcc cggactcgat caatcccacc gacacgccga acctctacgc cttgcgccag
     2761 caaggcgtgc agttcgccga caaccattcg acctacccga cgttcacgat gatgaacggc
     2821 tcgtcgttcg cgacaggctc gtttccgaag acgtccggct tctacggcaa caccttctgg
     2881 gccgcgccgc aagccggagc cgcccagccc atcccgatcg gcgaatcggc cggaggcggc
     2941 aaccaggatt acgtcgatcc ggtcttcacc gaggactacg cggttctgac gacgctcaac
     3001 gactactacg gcggtcagtt gctgctcgtc aagacgctct tcaagacggc ccaggacgcc
     3061 ggcctcaaga cgctggcgct cggcaagtcc ggtgccgcct acatccagga cttgaatcgc
     3121 ggcggcttct tcgtcgacga gaacgccgtg ctcccgcaat cgctcgcgac cgagctgcaa
     3181 gccgccaact tcgttctgcc cgcgaacacc ccgttcgcct accccgccgg cacgatcacg
     3241 ctggcggcgg cgaacggaag cccgacggcc cgggccggcg cgctgacctt cgcgttgccg
     3301 aacggcctgc aggcgcgcga tgcgacggac agcacgcagg gcgctccgga agatgcagcg
     3361 aacaaataca tgctgggcct cttcacgcag tacatcctgc cgaagaagct gcccgacctg
     3421 tcgctgatct ggttccgcac gcccgacaac agcgagcacg cctatgggcc gggttcggca
     3481 aactaccgca aggcgctcgc ctcgcaggac cagcgtctcg gcgaactcca agccggcctg
     3541 aaggcagcgg ggctcgacac gacgaccaac atcatcgtcg tctccgatca cggccacagc
     3601 aacgtctcgg ggccgacgca gctgttcccg ctgcgcgcca tcagcgccag caccgcggtg
     3661 acgaacggcg tgacgaatgc gctgctcggc ctgccggacc cggtcaaagg gttctccgtc
     3721 tcgggcgacg tgcgctcggc cgacctgctg acctttgccg gcttcaaggc gttcgacggc
     3781 agcggctgca gcaccacgcc gatggccgga atcaaggcgg acggctcggc ggtctatgcc
     3841 gtcgggatcg atgcgacggg tgcgctgtgc ggtgcggcca acgccaagta ccaggccgtg
     3901 agcgcgacgc tcgcggcacc ggtggcgagc ttcaaggtgc cggcgagcgt gccggcgacc
     3961 ggcatcgtca tcgcgaccaa tggcggctcc gactacttct acgtccccga ccacgacgcc
     4021 accacggtca cgaacctcgt gcgcttcctg cagagccgcg aggagttcgg agc
//
LOCUS       DASVHM010000293         1612 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_671378, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000293 DASVHM010000000
VERSION     DASVHM010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671378"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            177..1232
                     /locus_tag="VF308_05590"
     CDS             177..1232
                     /locus_tag="VF308_05590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436159.1"
                     /translation="MTWDIAFILSVDGLATGAVYLLAGIGLVLIFSVTRVVFVPFGDV
                     AAFAALSLAAFETKRLPPTIGLVLTLAALAVLAEVWQRVRQRQAWQIPKAILGWGVLP
                     ALPCVFAWAVFHADAPAWLQVVASIALVVPITPLLARLTLQPIADASVLVLLIVSLAL
                     HFLLSGLGLLFFGPEGSRTRPLAPGTWTIAEGYSINGQVLLMIASAIVLSGLFFLLFE
                     RTVTGKALRATAVNRVGARLVGIRPAHTALLAYGGASLLAGMIGVLIAPVTTMYYDSG
                     FIIGLKAFIAAIIGGLVSYPLTALGALAVGVFESFASFWSGELKDVLVFSLLIPVLML
                     RSFLATHTDEDEEEIDQ"
     gene            1229..>1612
                     /locus_tag="VF308_05595"
     CDS             1229..>1612
                     /locus_tag="VF308_05595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEX7436160.1"
                     /translation="MNAGRLRWVALAAVVVLLALAPLVLGRFAVSLLNDIGIGALVAL
                     GLVLLTGVGGATSFGQAAFVGVAAYASGWLTTVHGASPWLGLAFALALTGLAALAIGM
                     LTLRLGGHYLPLSTIAWGLSIALLFG"
BASE COUNT          182 a          581 c          554 g          295 t
ORIGIN      
        1 ccccgagcac cggagggcag tcgacgcgca gcggcgaccg ccgcagtgaa gcgcagacgg
       61 gcgcccgcgc acggctttgc gcgctcgacc tcccatgtga gccccgcgaa gcgcagacgg
      121 ccacccgccc acggctttgc gcgctcgacc gagatgacgc tcgcgaggat gaaccgatga
      181 cctgggacat cgcgttcatc ctctcggtcg acgggctggc caccggcgcg gtgtacctgc
      241 tcgccggcat cggactggtg ctgattttct cggtgacgcg ggtcgtcttc gtgccgttcg
      301 gcgacgtcgc ggcgttcgcg gcgctgagcc tcgcggcatt cgagacgaag cggctgccgc
      361 cgaccatcgg cctggtgctg acgctcgcag cgctggccgt gctggcggag gtctggcagc
      421 gcgtccggca gcgccaggcc tggcagattc caaaggcgat cctcggctgg ggcgtgctgc
      481 cggcgctgcc ctgcgtgttc gcgtgggcgg tctttcacgc cgacgcaccg gcctggctgc
      541 aagtcgtcgc gtcgatcgcg ctggtcgtgc cgatcacgcc cttgctggcg cgcctgacgc
      601 tgcagccgat cgccgatgcc tcggtgctcg tgctgctgat cgtctcgctc gcgctgcatt
      661 tcctgctctc cggattgggg ctgctgttct tcggcccgga aggctcgcgt acgcggcccc
      721 ttgccccggg aacctggacc atcgccgagg gctattcgat caacggacag gtcttgctta
      781 tgatcgcctc ggcgatcgtc ctgagcggcc tcttcttcct gctcttcgaa cgcaccgtga
      841 ccggcaaggc gctgcgcgcg accgcggtca accgggtcgg cgcgcgcctc gtcggcatcc
      901 ggccggcgca caccgccctg ctcgcgtacg gcggcgcatc gctgctggcc gggatgatcg
      961 gcgtgctgat cgcgccggtc acgacgatgt actacgactc gggcttcatc atcggcctga
     1021 aggccttcat cgcggccatc atcggcggcc tcgtcagcta tccgctgacc gccctcggcg
     1081 cgctcgcggt cggcgtgttc gaaagcttcg cgtcgttctg gagcggtgaa ctcaaggacg
     1141 tgctcgtctt cagcctgctg atcccggtgc tgatgctgcg ctccttcctc gcgacgcaca
     1201 ccgacgaaga cgaagaggag atcgaccagt gaacgccggc cggctgcgct gggtcgcgct
     1261 cgcggcggtc gtcgtgctgc tcgcgctcgc gccgctggtg ctcggccggt tcgcggtctc
     1321 gctcctcaac gacatcggca tcggcgcgct ggtcgcgctc ggcctcgtgc tgctgacggg
     1381 ggtcggcggc gcgacctcgt tcggccaggc cgcgttcgtc ggcgtcgccg cgtacgcgag
     1441 cggatggctc accaccgtgc atggcgcgtc gccgtggctg ggcctcgcgt tcgcgctcgc
     1501 cttgacgggc ctcgccgcgc tcgcgatcgg catgctgaca ctgcgcctcg gcggccacta
     1561 cctgccgctc agcacgatcg cctggggcct ctcgatcgcg ctgctgttcg gc
//
LOCUS       DASVHM010000294         2922 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_888507, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000294 DASVHM010000000
VERSION     DASVHM010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_888507"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..498
                     /locus_tag="VF308_05600"
     CDS             <1..498
                     /locus_tag="VF308_05600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019430579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX7436161.1"
                     /translation="EGADGPLQGGLVMDLILWRHAEAVIERPDQDDLERALTPKGERH
                     AQRMADWLNQRLAHSTRVLVSPALRCQQTARCLGRHFKTVAALGPGGDAEALLKAARW
                     PDAAEPVLVIGHQPTLGLVAAMVLAELAQPWAVKKGAVWWLRNRDREGLAQVVLQAVQ
                     SPDCL"
     gene            complement(512..2047)
                     /locus_tag="VF308_05605"
     CDS             complement(512..2047)
                     /locus_tag="VF308_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HEX7436162.1"
                     /translation="MQPGLASPPDAGSRWPGHLAAIDIGSNSFRLEIGQLVNGRYRRV
                     DYLKENVRLGAGLDPDGLLTDEAATRGLVCLARFAQRLDGYLPQQVRAVATQTLREAR
                     NRDLFLARAQQALGLPIEVISGREEARLIYAGVARLQPSDVPRLVIDIGGRSTEMILG
                     RGAKPLSAESFQVGSVSLSMKYFPDGRFTEGGFREAQVAAGAELEEALEPFGARHWHE
                     ALGSSGTVGAVSQVLAASGIGDGAITPAGLRWLMERCLEAGRIDKLALPGLRDDRRAV
                     IGGGLAILYTLAAQFGIEALRPARGALRQGVIFDLDDRLRATLSRQRGHDIREASVRE
                     LQQRFTVDTAQAERVARVAARLFASALPQASFEARRELQWACALHEVGMMVSHHDHHR
                     HSAYVLSHIDAPGFSQSQLRRVAELVLGQRGGLRKVEASLVRDEFRWQVLCLRLGVIH
                     CHARGDTDGRAIALRRDATRAVLDFAPGWFDAHPRTLHLLRQEVDAWARFGPLALSLG
                     SDS"
     gene            2143..>2922
                     /locus_tag="VF308_05610"
     CDS             2143..>2922
                     /locus_tag="VF308_05610"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008649833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX7436163.1"
                     /translation="MALLELDSLTPTRDFSRRDFVRTAVGSGFAAAVLPVAAQTIKTD
                     STGLTVGEVTVMVGDFKMPAYRARPAGKTNLPVVLVVSEIFGVHEHIADVARRFARLG
                     YLAIAPELFVRQGDAQSYGEIGKLVSEVISKVPDAQVMGDLDACVAWAKANGGDTSRL
                     GITGFCWGGRITWLYDAHNPAVKAGVAWYGRLAGPASALTPKNPVDLAGSLNGPVLGL
                     YGGDDPGIPQDTVEQMKKALATGSAAAKKSQFVVYPNAPHAF"
BASE COUNT          449 a         1017 c         1040 g          416 t
ORIGIN      
        1 gaaggcgctg atggccctct acaggggggg ctcgtgatgg acctgatcct gtggcgccat
       61 gccgaggcgg tgatcgaacg tcccgaccag gacgacctgg agcgcgcctt gacgccgaaa
      121 ggcgagcgcc acgcacaacg catggccgac tggctgaacc agcgtctcgc ccattccact
      181 cgcgtgctgg tcagtccggc gctgcgctgc cagcagacgg cccgctgcct gggtcgtcat
      241 ttcaagaccg ttgccgcgct tggaccgggc ggggatgccg aagcgctgtt gaaggcggcg
      301 cgctggcccg acgcggccga gccggtgctg gtcatcggcc accagccgac gctcggcctc
      361 gtcgccgcca tggtgctggc cgaactggcg caaccctggg cggtcaagaa gggcgccgtc
      421 tggtggttgc gcaaccgcga ccgcgaaggc ctggcgcagg tggtgctgca ggcggtgcag
      481 tcgccggatt gtctgtaggc gaggcgccgc ctcaggaatc agaccccagg ctcaatgcga
      541 gcggcccgaa ccgggcccag gcgtcgactt cctggcgcaa caggtgcagc gtgcgcgggt
      601 gggcgtcgaa ccagcccggc gcgaaatcca gcacggcccg ggtggcgtcg cgccgcaatg
      661 cgatcgcgcg accgtcggtg tcgccgcgtg catgacagtg gatcacgccc aggcgcaaac
      721 acagcacctg ccacctgaac tcgtcccgca cgaggctcgc ttcgaccttg cgcagtccgc
      781 cgcgctggcc gagcacgagt tcggcgacgc ggcgcaactg gctttgcgag aagcccggcg
      841 catcgatgtg cgagagcaca taggcgctgt ggcgatggtg atcgtggtgc gacaccatca
      901 tgccgacctc gtgcagcgcg caggcccact gcaactcgcg ccgcgcctcg aagctcgctt
      961 gcggcagcgc gctggcgaaa agacgcgccg cgacgcgcgc gacgcgctcg gcctgcgccg
     1021 tgtcgaccgt gaagcgctgc tgcagctcac gcaccgaagc ctcgcggatg tcgtggccgc
     1081 gctggcgcga cagcgtggcg cgcaggcgat cgtcgagatc gaaaatcacg ccctggcgca
     1141 aggcgccgcg cgccggccgc agcgcctcga tgccgaattg cgccgcgagc gtgtagagga
     1201 tcgcgagtcc gccgccgatc accgcgcggc gatcgtcccg caggcccggc agcgcgagct
     1261 tgtcgatgcg gccggcctcg aggcagcgct ccatcagcca gcgcaggccg gccggcgtga
     1321 tggcgccgtc gccgatgccg ctcgcggcga ggacctgcga caccgcgccc acggtgccag
     1381 acgagccgag cgcttcatgc cagtggcgcg cgccgaacgg ctcgagcgct tcctcgagct
     1441 cggcgcccgc cgcgacctgg gcctcgcgga agccgccctc ggtgaaccgg ccgtcgggga
     1501 aatacttcat cgacaggctg acgctgccga cctggaacga ttcggcgctc agcggcttcg
     1561 cgccgcggcc gagaatcatt tcggtcgagc gcccgccgat gtcgatgacc aggcgcggca
     1621 cgtcggaggg ctgcaggcgg gccacgcccg cgtagatcag gcgcgcttcc tcgcggcccg
     1681 agattacctc gatcggcagg ccgagcgcct gctgcgcccg cgccaggaac aggtcgcggt
     1741 tgcgcgcctc gcgcagggtc tgggtcgcca ccgcgcgcac ctgctgcggc aggtagccat
     1801 cgaggcgctg cgcgaagcgg gcgaggcaga cgaggccgcg cgtcgcggct tcatcggtga
     1861 ggagcccatc ggggtcgaga ccggcgccga ggcgcacgtt ctccttcagg tagtcgacgc
     1921 gccggtagcg gccgttcacc agttggccga tctcgagccg gaagctgttc gatccgatgt
     1981 cgatggcggc aagatgtccg ggccatcgcg atccggcatc ggggggcgag gcgaggccgg
     2041 gttgcatggc ctgcattgtc gcggcaagtc agcacggcgc agggtccggc ggtgccgcgc
     2101 caacctttct agaatcgccg attcgtaccc ggagatcccg ccatggccct gctcgaactc
     2161 gacagcctca ccccgacgcg cgatttcagt cgccgcgact tcgtccgcac cgccgtcggc
     2221 agcggcttcg ccgccgccgt gcttccggtg gccgcgcaga cgatcaagac cgacagcacc
     2281 ggactgacgg tcggcgaagt cacggtcatg gtcggcgact tcaagatgcc ggcataccgt
     2341 gcgaggccgg ccggcaagac gaatctgccg gtcgtgctgg tggtctccga gatcttcggc
     2401 gtgcacgagc acatcgctga cgtcgcgcgg cgcttcgcca ggctcggcta cctcgcgatc
     2461 gcgcccgaac tcttcgtgcg ccagggcgat gcgcagagct atggggagat cggcaagctg
     2521 gtctccgagg tcatctcgaa agtgccggat gcgcaggtga tgggcgacct cgatgcctgc
     2581 gtcgcctggg ccaaggccaa cggcggcgac acgagccggc tcggcatcac cggcttttgc
     2641 tggggcgggc gcatcacctg gctctacgac gcgcacaacc ccgcggtgaa agccggcgtg
     2701 gcctggtacg ggcgcctggc gggccccgcg tcggccttga ctcctaagaa ccccgtcgat
     2761 ctggccggga gcctgaacgg gccggtgctc ggcctttatg gcggcgacga tcccggcatt
     2821 ccccaggaca cggtggagca gatgaagaag gcgctcgcca cgggcagtgc cgcggcgaag
     2881 aaatcgcagt tcgtcgtcta cccgaacgca ccgcacgcgt tc
//
LOCUS       DASVHM010000295         4531 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_743492, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000295 DASVHM010000000
VERSION     DASVHM010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4531
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_743492"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1289)
                     /locus_tag="VF308_05615"
     CDS             complement(<1..1289)
                     /locus_tag="VF308_05615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HEX7436164.1"
                     /translation="MNSRRFLRAGAALLGVAALALFPVAIDNPYYIHLLETIMIYAIL
                     LFGLDIVVGYTGQVSLGHAGLFGIGAYAAGVMVTKLATPLLVTLIGAIGITALFGAVL
                     ALPALRVTGPYLAMVTLAFGTIIQILINEMTFLTEGPLGIKLTKPALLGMRLDERQFF
                     WLVAALLVLSLVFVHNVLRSHLGRAFEALRGSPVASDCMGVSVYRYKVYAFVISAGFA
                     GLAGALYSFSEQYISPNTYNFELTVLFLLAVIMGGRKTRTGAMLGATIIVILPKLLDD
                     LELFRYVSVALAIIVAIAAVIAVRRGKRTVPQMAIPVVGSIALAAVSFVLQGMTDWRL
                     SIFGVITLFVVYYLQDGIVGFVRNALNLQKHVAAPVSAATATPADAVATTARPGAAGD
                     ILEAGKVLMQFGGLKALNDVDLVVKRGAIHGLIGPNGS"
     gene            complement(1286..2161)
                     /locus_tag="VF308_05620"
     CDS             complement(1286..2161)
                     /locus_tag="VF308_05620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436165.1"
                     /translation="MEILTQLLFSGIALGMIYAVIAFGYQLTFQTSDTLNFGQGDALM
                     LGALVGLTLVGLGVNYWLMIPLVCIFGAVQGAFVERIGVRPALKIKSEFGWIMSTIAL
                     GIIFKNVAENVWGRDDLKFPSPLPESPLKFLGANILPMEILVVVGAVAMMLAVEIFNR
                     RSIYGKAVVATFNDRDAAKLMGINTGLVITFSYALSSMSAAFAGVLIAPLTLTGATMG
                     AVLGLKAFAVAIIGGLTSGMGIILGGIILGIAETTTGFYLSTGYKDVPGLVLLLIVLA
                     IRPAGLFGKTAIKKV"
     gene            complement(2231..3472)
                     /locus_tag="VF308_05625"
     CDS             complement(2231..3472)
                     /locus_tag="VF308_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436166.1"
                     /translation="MNHLTRLAGALALAASAGLTFAADPIKIGVDGPFTGGSSSMGVS
                     MRDGVRLATDEINKAGGVLGRQIQLVERDDESKNERGVQIAQELINKEKVVAAVGYIN
                     TGVALASQRFFQDAKIPVMNNVATGSVITHQFDDQSENYIFRNAAHDSIQAPMVVEEA
                     ITRRGYKKPAILADSTNYGQLGRADLEKALELKGIKAVAVEKFNIKDVDMTAQLLKAK
                     EAGADVVLTYGIGPELAQIANGMTKLGWKVPMIGSWTLSMANFIDNAGPGGEGARMPQ
                     TFIQEPTTPKRQSFIVAYLKTFNPKNSRIDSPVSAAQGYDSVYLLAAAIKQAGSTDGP
                     KIKAALENLSTTVDGVVTTYNKPFSKGDHDAITANIPVFGEVKGQRVVYAYPDDQQKA
                     SQVRLKDVNAKGALVVKKPSP"
     gene            3551..>4531
                     /locus_tag="VF308_05630"
     CDS             3551..>4531
                     /locus_tag="VF308_05630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEX7436167.1"
                     /translation="MPEPRRGAWPGRDNPAVLPPIEFPEALPVSARRAEIAAAIRDHP
                     VVIVCGETGSGKTTQLPKIALGLGRGRANGGGLIGHTQPRRIAASSVAKRIAEELKTP
                     FGEVVGYKVRFQDRLSAGASVKLMTDGILLAETQSDPLLRAYDTIIVDEAHERSLNID
                     FLLGHLRQILPRRPDLRVIVTSATIDADRFANHFAGAGGPAPVIQVSGRLYPVEIRWR
                     PFEERRDHDLGDAICDAVDELWRGPGAAGSGDVLVFLPGEREIRDTAERLRKHHPPGV
                     EVLPLFARLSQEQQDQVFAPHSARRIVLATNVAETSLTVPGIRYVIDAGMA"
BASE COUNT          758 a         1447 c         1604 g          722 t
ORIGIN      
        1 gagccgttcg gaccgatcag gccgtggatc gcgccgcgct tgacgacgag gtcgacgtcg
       61 ttgagcgcct tgaggccgcc gaactgcatc agcaccttgc cggcctcgag gatgtcgcca
      121 gccgcgcccg gtctcgccgt cgtggcgacg gcatcggccg gtgtcgccgt cgccgcgctc
      181 acgggggcag cgacgtgctt ttgcaggttg agcgcgttgc gcacgaagcc gacgatgccg
      241 tcctgcaggt aatagacgac gaagagcgtg atgacgccga agatcgacag gcgccagtcg
      301 gtcatgccct gtagcacgaa cgagacggcg gcgagggcaa tgctgccaac gacggggatg
      361 gccatctgcg gcacggtgcg tttgccgcgc cggaccgcga tgacggcggc gatcgcaacg
      421 atgatcgcca gcgccaccga cacgtagcgg aagagctcga gatcgtcgag cagcttgggc
      481 aggatcacga tgatcgtcgc gccgagcatc gcgccggtgc gggtcttgcg gccgcccatg
      541 atgacggcga gcaggaacag cacggtcagc tcgaagttgt aggtgttggg cgagatgtac
      601 tgctcggaga acgagtacag cgctcccgcc aggcctgcga agccggcgct gatcacgaag
      661 gcatagacct tgtaacggta caccgagacg cccatgcagt cggacgcgac cgggctgccg
      721 cgcagcgctt cgaaggcgcg gccgagatgc gagcgcagca cgttgtgcac gaagaccagc
      781 gacagcacaa gcagcgccgc gacgagccag aagaactgcc gctcgtcgag gcgcatgccg
      841 agcagcgccg gcttggtgag cttgatgccg agcgggcctt cggtgaggaa ggtcatctcg
      901 ttgatcagga tctggatgat cgtgccgaag gcgagcgtca ccatcgcgag gtaggggccg
      961 gtgacgcgca aggcgggcag ggcgagcacc gcgccgaaga gcgcggtgat gccgatcgcg
     1021 ccgatcagcg tcacgagcag cggcgtcgcg agcttggtga ccatcacgcc ggcggcgtag
     1081 gcgccgatgc cgaacaggcc cgcgtggccg agcgagacct gccccgtgta gccgacgacg
     1141 atgtcgagcc cgaagagcag gatcgcgtag atcatgatcg tctcgagcag gtggatgtag
     1201 tacgggttgt cgatcgcgac cgggaacagc gcgagcgccg cgacgcccag cagcgccgcg
     1261 cccgcgcgca ggaagcggcg cgagttcata ccttcttgat cgcggtcttg ccgaagaggc
     1321 cggccggccg gatcgccagc acgatgagga gcaggacgag gccgggcacg tccttgtagc
     1381 cggtcgagag gtagaagccg gtggtggtct cggcgatgcc gaggatgatg ccgccgagga
     1441 tgatccccat gccgctcgtc aggccaccga tgatggccac cgcgaaggcc ttcaggccga
     1501 gcaccgcacc catggtcgcg ccggtgagcg tgagcggcgc gatcagcacg cccgcgaagg
     1561 ccgcgctcat cgacgacagc gcgtacgaga acgtgatcac gaggccggtg ttgatgccca
     1621 tcagcttggc ggcatcacga tcgttgaagg tggcgacgac ggccttgccg tagatcgagc
     1681 ggcggttgaa gatctccacc gccagcatca tcgccacggc gccgacgacg accaggatct
     1741 ccatcggcag gatgttggcg ccgaggaact tgagcggcga ctcgggcagc ggcgacggga
     1801 acttgaggtc gtcgcggccc cagacgttct cggcgacgtt cttgaagatg atgccgagcg
     1861 cgatcgtcga catgatccag ccgaactccg acttgatctt gagcgccggg cgcacgccga
     1921 tgcgttcgac gaaggcaccc tggaccgcgc cgaagatgca gacgagcggg atcatcagcc
     1981 agtagttgac gccgagaccg acgagcgtga ggccgacgag ggcacccagc atgagcgcgt
     2041 cgccctgacc gaagttgagc gtgtcggacg tctggaacgt gagctggtag ccgaaggcga
     2101 tgaccgcgta gatcatgccg agggcgatgc cgctgaacag gagttgggtc aggatttcca
     2161 tggcggcaga cacgagaaac gaaaggcgcg gccctgggcg agcccggggc cgcgccaggg
     2221 cctggtcgga ctacgggctg ggcttcttga cgaccagcgc acccttggcg ttgacgtcct
     2281 tcaggcgaac ctgcgatgcc ttctgctggt cgtcagggta tgcgtagacg acgcgctggc
     2341 ccttgacctc gccgaacacc gggatgttgg cggtgatcgc gtcgtggtcg cccttcgaga
     2401 acggcttgtt gtaggtcgtg acgacgccgt cgaccgtggt cgacaggttc tcgagcgcgg
     2461 ccttgatctt cgggccgtcg gtcgagccgg cctgcttgat cgccgcggcg agcaggtaga
     2521 ccgagtcgta gccttgtgcc gccgagaccg gcgagtcgat gcggctgttc ttcgggttga
     2581 aggtcttcag gtaggcgacg atgaacgact ggcgcttggg tgtcgtcggt tcctggatga
     2641 aggtctgcgg catgcgcgcg ccttcgccgc cggggccggc gttgtcgatg aagttggcca
     2701 tcgagagcgt ccacgagccg atcatcggca ccttccagcc gagcttggtc atgccgttgg
     2761 cgatctgcgc cagctcgggg ccgatgccgt aggtgaggac gacgtcggcg ccggcctcct
     2821 tggccttgag cagctgcgcc gtcatgtcga cgtccttgat gttgaacttc tcgaccgcca
     2881 ccgccttgat gcccttgagc tcgagagcct tttcgaggtc ggcgcggccg agctgtccgt
     2941 aattggtcga gtcggcgagg atggccggct tcttgtagcc gcgccgggtg atcgcctctt
     3001 cgacgaccat cggcgcctgg atgctgtcgt gggcggcgtt gcggaagatg tagttctcgg
     3061 actggtcgtc gaactggtgg gtgatgaccg agccggtggc gacgttgttc atcaccggga
     3121 tcttggcgtc ctggaagaag cgctgcgaag caagggcgac gccagtgttg atgtagccga
     3181 ccgccgcgac gaccttctct ttgttgatca gctcctgggc gatctgcacg ccgcgctcgt
     3241 tcttcgattc gtcgtcgcgc tcgaccagct ggatctgccg accgagaacg ccgccggcct
     3301 tgttgatctc gtcggtggcc aggcgaacgc cgtcgcgcat gctgacgccc atcgacgacg
     3361 atccgccggt gaatgggccg tcgacgccga tcttgatcgg gtcggcggca aaggtgaggc
     3421 ctgcggaggc cgcgagcgcg agggcgcctg cgaggcgggt caggtgattc atggatgctc
     3481 cggaaacgga attgggggtc gaacaaaccc ggagaatcta gcatccgcca ccgagcccct
     3541 gtatcggtga atgcctgagc cgcgtcgtgg tgcatggccc ggtcgggata atcccgccgt
     3601 gctcccgccc atcgagttcc ccgaggccct gccggtctcg gcccggcgcg ccgagatcgc
     3661 cgcagccatc cgtgaccacc cggtcgtcat cgtctgcggc gagaccggct cgggcaagac
     3721 gacccagctg ccgaagatcg cgctcggcct cggccgcggc cgcgccaacg gcggtggact
     3781 gatcggccac acgcagccgc gccggatcgc cgcgtcgagc gtcgccaagc ggatcgccga
     3841 ggagctgaag actcctttcg gcgaggtcgt cggctacaag gtgcgcttcc aggaccggct
     3901 gagcgcgggc gccagcgtca agctcatgac cgacggcatc ctgctcgccg agacgcagag
     3961 cgacccgctg ctgcgcgcct acgacacgat catcgtcgac gaggcgcacg agcgcagcct
     4021 gaacatcgac ttcctgctcg gccacctgcg ccagatcctg ccgcgccggc ccgacctgcg
     4081 cgtcatcgtg acgtcggcga cgatcgacgc cgatcgattc gccaaccact tcgcgggcgc
     4141 tggcgggccg gcgcctgtga tccaggtctc ggggcggctc tatccggtgg agatccgctg
     4201 gcggccgttc gaggaacgtc gcgatcacga cctcggcgac gcgatctgcg atgccgtcga
     4261 cgagctctgg cgcggccccg gcgcggccgg ctccggcgac gtcctcgtct tcctgcccgg
     4321 cgagcgcgag atccgcgaca cggccgaacg cctgcgcaag catcatccgc cgggcgtcga
     4381 ggtcctgccg ctgttcgcgc gcctgagcca ggagcagcag gaccaggtct tcgcgccgca
     4441 cagcgcgcgc cggatcgtgc tcgccaccaa cgtcgccgag acctcgctca ccgtgcccgg
     4501 catccgctat gtgatcgacg ccggcatggc g
//
LOCUS       DASVHM010000296         2002 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1175502, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000296 DASVHM010000000
VERSION     DASVHM010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1175502"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..984
                     /locus_tag="VF308_05635"
     CDS             <1..984
                     /locus_tag="VF308_05635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436168.1"
                     /translation="CFERGWTDGMPVVPPTQARVLRMLRGTTRTADEVIGMVPPDLAP
                     CTIEKVAINAVLAGCKPEYLPVVLAAVEAALIDEFGMHGVLCTTMFAGPVVIVNGPIA
                     RSVGMNSGVNALGQGNRANATIGRALQLVIRNVGGGRPGEIDRATLGTPGKYSFCFAE
                     AEDSAWEPLSVERGHARGTSTVTLFAGEGVQGIVDQKSRTPESLAKSFALCLRAVDHP
                     KLAMAGDALLVVSPDHCRVFLEAGWSKARLRDELTALLELPADEMIVGAQGIAEGVPA
                     AFAGKMIPKFRPGGLLIVRAGGGAGLFSAVIAGWAASGPTGSTPVSKEITS"
     gene            981..1505
                     /locus_tag="VF308_05640"
     CDS             981..1505
                     /locus_tag="VF308_05640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_273701367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:1263..1265,aa:Sec)
                     /transl_table=11
                     /product="UGSC family (seleno)protein"
                     /protein_id="HEX7436169.1"
                     /translation="MSSHHVLLDPTSERAPVARALLARPASFEGLTVGILDISKARGD
                     VFLDRIAARLVERGIGVKRYKKPTFTRPAPTALKQQIAAECNLVIEGLADUGSCTSCC
                     MHDIADLEGRGIPGVGVASTEFIQAAAMQSKTLGFDPALVFVAHPIQDRSDDELRALA
                     DAALDAILQRLRAP"
     gene            1524..>2002
                     /locus_tag="VF308_05645"
     CDS             1524..>2002
                     /locus_tag="VF308_05645"
                     /inference="COORDINATES: protein motif:HMM:NF015780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEX7436170.1"
                     /translation="MSGAQAGRAPHLPAVDRVLGWPAVAALTAAHGRVAVLAAVRAEL
                     AALRALRSGGAGPALPIGLTEANEAVLACAITARVEAARAPSLRKVFNLTGTVLHTNL
                     GRAPLPPQALAAIEAAAAGATNLEFDLMTGRRGERDDHVEAALRRITGAAAASVVNN"
BASE COUNT          288 a          721 c          695 g          298 t
ORIGIN      
        1 tgcttcgagc gcggctggac cgacggcatg ccggtcgtgc ctccgaccca ggcgcgcgtg
       61 ctgcggatgt tgcggggaac gacgcgcaca gccgacgaag tgatcggcat ggtgccgccc
      121 gatcttgcgc cgtgcacgat cgagaaggtc gcgatcaatg cggtgctggc cggctgcaag
      181 cccgagtacc tgccggtcgt gctggccgcg gtcgaggcgg cattgatcga cgagttcggc
      241 atgcacggcg tgctctgcac gacgatgttc gcgggcccgg tcgtgatcgt caacggcccg
      301 atcgcccgca gcgtcggcat gaattcgggc gtcaacgcgc tcggccaggg caaccgcgcc
      361 aatgccacga tcggtcgcgc gctgcagctc gtgatccgca acgtcggcgg cggacgcccc
      421 ggcgagatcg atcgggccac gctcggcacc ccgggcaagt acagcttctg tttcgccgag
      481 gccgaagaca gtgcctggga gccgctctcg gtcgaacgcg gccacgcccg cggcacctcg
      541 accgtgacgc tcttcgccgg cgaaggcgtg cagggcatcg tcgaccagaa atcgcgaacg
      601 cccgaatccc tcgcgaagag cttcgcgctc tgcctgcgcg cggtcgatca tccgaagctg
      661 gcgatggcgg gcgacgcgct gctcgtcgtc tcacccgatc attgccgcgt cttcctcgaa
      721 gccggctggt cgaaggcgcg cttgcgcgac gagctgacgg cgctgctgga gctgccggcc
      781 gacgagatga tcgtcggcgc gcagggcatc gccgaaggcg tgcccgcggc attcgccggc
      841 aagatgatcc cgaagttcag gcccggcggc ctgctcattg ttcgggccgg cggcggcgcc
      901 ggcctctttt ccgccgtcat cgccggctgg gccgcctccg gcccgacggg ttccacaccg
      961 gtatcgaagg agatcacctc atgagttcac accacgtcct gctcgacccg acttcggagc
     1021 gggcgccggt ggcgcgcgcg ctgcttgcgc gtccggcttc gttcgagggc ctgacggtcg
     1081 gcattctcga catctcgaag gcacgcggcg acgtgttcct cgaccgcatc gccgcgcgcc
     1141 tcgtcgagcg cggcatcggc gtcaaacgct acaagaagcc gaccttcacg cgccccgcgc
     1201 cgaccgcgct gaagcagcaa atcgcggccg agtgcaacct cgtcatcgaa ggcctggccg
     1261 actgaggatc gtgcacgtcg tgctgtatgc atgacatcgc agatctcgaa ggtcgtggca
     1321 ttcccggtgt cggcgttgcg tccaccgaat tcatccaggc ggcggcgatg cagtcgaaga
     1381 cgctcggctt cgatcccgcg ctcgtcttcg tcgcgcatcc gatccaggac cgcagcgacg
     1441 acgagttgcg cgcgctggcc gacgccgcgc tcgacgccat cctgcaaaga ctccgcgcgc
     1501 cttgagccgt gcggccgcgg cccgtgagcg gcgcacaggc cggccgcgcg ccgcacttgc
     1561 ccgcggtcga tcgcgtcctc ggctggccgg cggtcgcggc gctgaccgcc gcgcatggcc
     1621 gggtcgcggt gctggccgcg gtgcgcgccg agctcgctgc gttgcgggcg ctgcgcagcg
     1681 gcggcgccgg gcccgcactt ccgatcggcc tcaccgaagc gaacgaagcc gtgctcgcat
     1741 gcgcgatcac ggcccgcgtc gaggcggctc gggcgccgtc gctgcgcaag gtgttcaacc
     1801 tgaccggcac ggtgctgcac acgaacctcg ggcgcgcacc gctgccgccg caggcgctgg
     1861 ccgcgatcga ggccgcggcg gccggcgcga ccaacctgga attcgatctc atgaccgggc
     1921 gccgcggcga gcgcgacgac catgtcgaag ccgcactgcg acgcatcacc ggcgccgctg
     1981 cggccagcgt cgtcaacaac aa
//
LOCUS       DASVHM010000297         7006 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_94140, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000297 DASVHM010000000
VERSION     DASVHM010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7006
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94140"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..808)
                     /locus_tag="VF308_05650"
     CDS             complement(<1..808)
                     /locus_tag="VF308_05650"
                     /inference="COORDINATES: protein motif:HMM:TIGR02177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEX7436171.1"
                     /translation="MNEPSAPVAVRTHGDYKSKTKPVWCPGCGDFTVLGAITRALAAL
                     QLPAHEVAIVSGIGCSSRIPAYTTCYGFHGVHGRALAAGTGLKVARPELTVLVTGGDG
                     DGYSIGGNHFMHACRRNVDMTYIVMDNHVYGMTKGQASPTTEPDWDNKLSPGGTGIRS
                     FHPLVIALASGASFVARAFSGDTSGTAQIIAKAIRHPGFSFVEVLSPCVTFRPEQRGW
                     KEQVRQAAVDPTDDAARAARRIMTDDGFNIGVLYAGDRTPYPLRSGKATRT"
     gene            complement(805..2628)
                     /locus_tag="VF308_05655"
     CDS             complement(805..2628)
                     /locus_tag="VF308_05655"
                     /inference="COORDINATES: protein motif:HMM:TIGR03710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HEX7436172.1"
                     /translation="MDVQTQTKPCPAHLAPAATLTSLSIALAGSGGSGVMTAGTMLLE
                     AAAKAGLYGLMVRTSGPQIRGGEAAALLRLGPRPIDALDDAFDLLLAFDWESLHRFAD
                     EIPLRASGLIVGDSGAGEPPAVFLASGARFASVELKKIAKAIPGSWINMVALGLAGTL
                     AGLPAEAIAAALRDTWKRSDAGLQPNLLALQAGIDAAAGIGGLPRLKAPPPASEARWL
                     ISGNEAAGYGAIRGGVRFVAAYPITPATELLEWMAPALAKVGGSLLQAEDELASINMA
                     IGASYGGVPALTATAGPGLALMTEAIGLAVSAEVPVVIVDVMRGGPSTGIPAKSEQSD
                     LSFAVSGLPGDAPRLVLAPTSIADCLATTQWAVQLAEALQAPAIVLSDQFMGQSRAII
                     DRPADCGFVAARLTAAADTPDYQRYRDTPSGVSPMAIPGTAGVAYTADGLEHTEAGIP
                     SSQARDHRLQLAKRERKLAQHAYGRWWADIEGDGDAAVITFGSVTGTVREAIARASAH
                     GVKLRLVALRLLAPLLSHELDAALAGVARVIVVEQNHGAQLFRWLRAMHDLPGRPASF
                     HRPGPLPLRPGELTEALLDWHRAGTAASAAVDAAAAQKEYA"
     gene            2784..3902
                     /gene="oah"
                     /locus_tag="VF308_05660"
     CDS             2784..3902
                     /gene="oah"
                     /locus_tag="VF308_05660"
                     /EC_number="3.7.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR03200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018807 -
                     6-hydroxycyclohex-1-ene-1-carboxyl-CoA hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0019439 - aromatic compound catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase"
                     /protein_id="HEX7436173.1"
                     /translation="MNAPELLTRRRELKDHELVDVVARPGLRYEKRPATRPDGSVAPG
                     LYNAWITLDNPEQYNSYTTDMVKGVILAFRAASNARDVNCVVFTGAGDKAFCTGGNTK
                     EYAEYYAGHPQEYRQYMRLFNDMVSAILACDKPVICRVNGMRIGGGQAIGMACDFSVA
                     QDLARFGQAGPKHGSAPIGGATDFLPVMVGAERAMVACVLCEPFSAHRAYQMGVLTDI
                     VPALKVDGRFIANPLVETQRAYDEFGRLLYGEFKSGPAAREAKAVIASGTVDLSLLDA
                     KVEELCAKMLLTFPDCMTKTLEELRKPKLDAWNRNKENSRAWLALNMVTEARAGFTAF
                     NEGPKNDREVDFVLLRQKLAADESWVGPMHDAIQPKKP"
     gene            3905..4672
                     /locus_tag="VF308_05665"
     CDS             3905..4672
                     /locus_tag="VF308_05665"
                     /EC_number="4.2.1.100"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclohexa-1,5-dienecarbonyl-CoA hydratase"
                     /protein_id="HEX7436174.1"
                     /translation="MSAAVKAWDEQGGALLRLRLDRPKANIVDAEMIGALHGALEQAK
                     QQTTWRGVLLDAEGPNFSFGASVEEHLASRCAGMLAALHALVLEMLAFPAPILVAVRG
                     QCLGGGLEIALAAGQIFAAPDAKFGQPEMKLGVFAPAASVLLPYRVHQPAAEDLLFSG
                     RSIGAGEAEAIGLVRAVADDPAAAALAYFEQHLRGKSAASLRCALVAARAPMLRDVQA
                     RLAEVERLYLDRLMATRDANEGLDAFLAKRQPSWEHR"
     gene            4669..5853
                     /gene="bcrC"
                     /locus_tag="VF308_05670"
     CDS             4669..5853
                     /gene="bcrC"
                     /locus_tag="VF308_05670"
                     /EC_number="1.3.7.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR02263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018522 - benzoyl-CoA reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA reductase subunit C"
                     /protein_id="HEX7436175.1"
                     /translation="MNTIPITPVAAIVERCQTLFDDLDFSAVKAWKAAVPGRKAIGYM
                     PVYVPRELIHAAGMLAVGILGGGDSLEVIQGDAYYQSYICRIPRSTIELGLTGRLDCL
                     DGMLFPSICDVIRNLSGMWQILFKDKYVKYVDVPQNYQDSVGGTFYIQEMEVVREDLG
                     RLRGKPITDAELNDSIRVYNDNRAAVRELYAYRAAKPWQAPTAEVYLLLRAGMVLPPE
                     DHTVLVREYIAATDRVPRPKRDNARVVINGSFCEQPPLGLIKSIEMSGCYIVDDDFML
                     VTRWLLDEVPADANPLDELSKAFLHRSASTAAKYETTREEKGVFLMKQVKTGAAEGVI
                     FAAPSFCDPALLERPMLQDVLGKHGIPYTAFKYAENTGQMAPIREQAGTFADSIKLWS
                     AA"
     gene            5850..>7006
                     /gene="bcrB"
                     /locus_tag="VF308_05675"
     CDS             5850..>7006
                     /gene="bcrB"
                     /locus_tag="VF308_05675"
                     /EC_number="1.3.7.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR02260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018522 - benzoyl-CoA reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA reductase subunit B"
                     /protein_id="HEX7436176.1"
                     /translation="MNTSTIAMPAPTGTAKRPPPVQKEDAMWLQKELINRNYMELATA
                     RANNRKVSATFVPGNLNELLMCFDFARSLPETNALQNGMRKKSGKMIMDAERDGQSED
                     VCTYVKADLGMMMGGEIGPTGEPLPKPDILLLSYTGCFTFMKWFELIRHKYGCETVML
                     HVPYQGEGRIQPNMREYVVKQLKETVIPTLERISGVKFDIDRLRQYMRESVKAENDLV
                     AVLQSAKHRPSPIDGYFGAVYYIGPIFTAFRGTPEATEYYRVLRGEIEQRIRDGKGPV
                     TPEGEMGEEKYRLIVEGPPNWTSFREFWKMFYDEGAVVVSSTYAKVGGLYDFGFRHDP
                     DHPLESLADYCLGCYTNLNLPSRIDMICRYIDEYQADGLLINSIKSCNSFSA"
BASE COUNT         1158 a         2417 c         2390 g         1041 t
ORIGIN      
        1 cggtccgcgt cgccttgccg gaacgtagcg gatagggcgt gcggtcaccg gcatagagca
       61 cgccgatgtt gaagccgtcg tcggtcatga tgcggcgtgc cgcgcgggcg gcgtcgtcgg
      121 tcgggtccac cgccgcttgg cgaacctgct ccttccagcc gcgctgctcg ggccggaagg
      181 tgacgcacgg gctcaggacc tcgacgaaag agaagcccgg gtggcggatc gccttggcga
      241 tgatctgcgc cgtgccgctg gtgtcgcccg agaacgcgcg ggcgacgaag ctcgcgccgg
      301 aggcgagcgc gatcacgagc ggatgaaacg agcggattcc ggtgccgccg gggctcagct
      361 tgttgtccca gtcgggttcg gtcgtcggcg acgcctggcc cttggtcatg ccgtagacgt
      421 ggttgtccat cacgatgtag gtcatgtcga cgttgcgccg gcacgcatgc atgaagtggt
      481 tgccaccgat cgagtagccg tcgccgtcgc cgccggtgac gaggacggtc agctccgggc
      541 gcgccacctt caggccggtg ccggcggcga gcgcccggcc gtgaacgccg tgaaagccgt
      601 agcaggtcgt gtaggcgggg atgcgcgacg agcagccgat tccggacacg atcgccacct
      661 cgtgcgccgg caactgcagg gcggcgaggg cgcgggtgat cgcgcccagc accgtgaaat
      721 cgccgcagcc ggggcaccag accggcttcg tcttcgactt gtaatcgccg tgggtgcgca
      781 cggcgacggg ggcggagggc tcgttcatgc gtactccttt tgcgcggcgg cagcgtcgac
      841 ggcggcggag gcagcggtgc cggcgcgatg ccagtcgagc agcgcctcgg tcagttcgcc
      901 gggccgcagc ggcagggggc cgggacggtg gaagctcgcc ggccggcccg ggagatcgtg
      961 cattgcgcgc agccagcgga acagctgcgc accgtggttc tgctcgacga cgatcacgcg
     1021 tgcgacgccg gcgagcgcgg cgtcgagctc gtgcgacagc agcggcgcga ggaggcgcag
     1081 tgcgacgagt cgcaacttga cgccgtgggc cgaggcgcgg gcgatggcct ctcgcacggt
     1141 gccggtcacc gagccgaagg tgatcaccgc ggcgtcgccg tcgccttcga tgtcggccca
     1201 ccagcggccg taggcgtgct gcgccagctt gcgctcgcgc ttggcgagct ggagcctgtg
     1261 gtcgcgcgcc tggctgctcg ggattcccgc ctcggtgtgc tccaggccgt cggcggtgta
     1321 ggcgacgccg gcggtgccgg ggatcgccat cggcgagacc cccgagggcg tgtcgcgata
     1381 acgctggtag tcgggcgtgt cggcggcggc ggtcagtctc gcggcgacga agccgcagtc
     1441 cgcgggccgg tcgatgatgg cgcgcgactg gcccatgaac tggtcggaaa ggacgatcgc
     1501 gggcgcctgc aatgcctcgg cgagctgcac cgcccattgc gtggtcgcca ggcagtcggc
     1561 gatcgaggtc ggtgcgagca ccagtcgcgg cgcatcgccg ggcagcccgc tgaccgcgaa
     1621 cgacagatcg ctctgttcgc ttttcgccgg gatgccggtg gagggaccgc cacgcatcac
     1681 atcgacgatg accacgggca cttcggcgct gaccgccagt ccgatggcct ccgtcatcag
     1741 cgcaaggccc gggcccgcag tggccgtcag cgccggaacg ccgccgtagg aggcaccgat
     1801 ggccatgttg atcgaggcga gctcgtcttc ggcctgcagc agcgagccgc ccaccttggc
     1861 cagcgccggc gccatccatt cgagcagctc cgtggccggc gtgatcggat aggcggcgac
     1921 gaagcgcacg ccgccgcgga tggcgccgta gccggcagcc tcgttgccgc tgatcagcca
     1981 gcgcgcttcg ctcgcggggg gcggggcctt caggcgaggc aggcccccga ttcccgcggc
     2041 cgcatcgatg ccggcctgca acgcgagcag gttcggctgc agcccggcgt cgctgcgctt
     2101 ccaggtgtcg cgcaacgcgg cggcgatcgc ctcggcaggc agcccggcca gcgttcccgc
     2161 caggcccagg gccaccatgt tgatccagct gccggggatc gccttggcga tcttcttcag
     2221 ctccacgctg gcgaagcgcg cgccactggc gaggaacacg gccggcggct cgccggcccc
     2281 gctgtcgccg acgatcaggc ccgaagcccg cagcgggatc tcgtccgcaa accggtgcag
     2341 gctctcccaa tcgaaggcga gcagcaggtc gaaggcgtcg tcgagcgcgt cgatcggccg
     2401 cggtcccagg cgcagcagcg ccgccgcctc gccgccgcgg atctgcgggc cgctcgtgcg
     2461 caccatcaag ccgtagaggc ccgccttcgc ggcggcctcg agcagcatcg tcccggcggt
     2521 catgacgccg ctgccgccgg atcccgcgag ggcgatcgaa aggctggtga gagtcgcagc
     2581 cggggcaagg tgcgccgggc agggcttggt ctgggtctgg acatccacgg gcgctcctcg
     2641 gcttcggcga tgctgcaagt ggaacggcgg cggcgcgtcc caactttgat ctagttcaaa
     2701 gacgacgcga tctcgcgtgc cgatgatcgg ataaactggt attaaagtac cactttacta
     2761 taaatgccct gcaaggagaa ccgatgaacg ctcccgaact cctgacacgc agacgcgagc
     2821 tgaaagacca cgagctcgtc gacgtcgtcg cgcgacccgg cctgcgctac gagaagcgcc
     2881 ccgcgacgcg ccccgacggc agcgtcgcgc ccggcctcta caacgcgtgg atcacgctcg
     2941 acaaccccga acagtacaac tcgtacacga ccgacatggt caagggcgtg atcctcgcct
     3001 tccgcgccgc ctcgaatgca cgcgacgtca actgcgtcgt cttcaccggc gccggcgaca
     3061 aagccttctg caccggcggc aacaccaagg aatacgccga gtactacgcc ggccatccgc
     3121 aggagtaccg ccagtacatg cggctcttca acgacatggt gagcgcgatc ctcgcctgcg
     3181 acaagccggt gatctgccgt gtcaacggca tgcgcatcgg cggcggccag gcgatcggca
     3241 tggcctgcga cttctcggtc gcgcaggatc tggcgcgctt cggccaggcc gggcccaagc
     3301 acggctcggc gccgatcggc ggcgccaccg acttcctgcc ggtgatggtc ggcgccgaac
     3361 gcgccatggt ggcgtgcgtc ctgtgcgagc cgttctcggc gcaccgggct taccagatgg
     3421 gcgtgctgac cgacatcgtg ccggcgctca aggtcgacgg ccgcttcatt gccaacccgc
     3481 tggtcgagac gcaacgcgcc tacgacgagt tcggccgcct cctctacggc gagttcaaga
     3541 gcggaccggc ggcgcgcgaa gcgaaagcgg tcatcgcgtc cggaacggtc gacctgtcgc
     3601 tgctcgatgc caaggtcgag gagctgtgcg cgaagatgct gctgaccttc cccgactgca
     3661 tgaccaagac gctcgaggaa ctgcgcaagc ccaagctcga cgcctggaac cggaacaagg
     3721 aaaactcgcg cgcctggctg gcgctgaaca tggtcaccga ggcccgggcc gggttcaccg
     3781 ccttcaacga ggggccgaag aacgaccgcg aggtcgactt cgtgctcctg cgccagaagc
     3841 tcgccgccga cgagagctgg gtcgggccga tgcacgacgc catccagccg aagaagccct
     3901 gaccgtgagc gctgcggtca aggcatggga cgagcagggc ggcgcgctgc tgcgcctgcg
     3961 gctcgaccgg ccgaaggcca acatcgtcga tgccgagatg atcggcgcgc tgcacggcgc
     4021 cctcgagcag gcgaagcagc aaacgacctg gcgcggtgtc ctgctcgatg ccgaggggcc
     4081 gaatttcagc ttcggcgcga gcgtcgagga gcacctcgcg tcccgctgcg cgggcatgct
     4141 cgcggcgctc cacgcgctcg tcctcgagat gctcgcgttc ccggcgccga tcctcgtcgc
     4201 ggtccgcggt caatgcctcg gtggcgggct cgagatcgcg ctcgccgccg ggcagatctt
     4261 cgccgcgccg gacgcgaagt tcgggcaacc cgagatgaag ctcggcgtgt tcgcgccggc
     4321 ggcctcggtg ctgctgccct accgcgtcca tcagcccgcc gcggaagacc tgctcttttc
     4381 cggccgctcg atcggcgccg gcgaagcaga ggcgatcggc ctcgtgcgag cggtcgccga
     4441 cgaccctgcc gccgccgcgc tcgcctactt cgagcagcac ctccgcggca agagcgcggc
     4501 gtcgctgcgc tgcgcgctcg tcgccgcacg cgcgccgatg ttgcgcgatg tgcaggcgcg
     4561 cctggctgaa gtcgaacgtc tctatctcga ccgactcatg gcgacccgcg acgcgaacga
     4621 aggcctcgac gccttcctcg ccaagcgcca gccttcctgg gagcatcgat gaacaccatc
     4681 ccgatcacgc ccgtcgcggc catcgtcgag cgttgccaga cgctcttcga cgatctcgac
     4741 ttctcggcgg tcaaggcgtg gaaggcggcc gtgcccggcc gcaaggcgat cggctacatg
     4801 ccggtctacg tgccgcgcga gctgatccac gccgccggca tgctggcggt gggaatcctc
     4861 ggcggcggcg attcgctcga ggtgatccag ggcgatgcct actaccagag ctacatctgc
     4921 cgcattccgc gctcgacgat cgagctcggc ctgaccggcc ggctcgactg cctcgacggc
     4981 atgctgttcc cgtcgatctg cgacgtgatc cgcaacctct ccggcatgtg gcagatcctc
     5041 ttcaaggaca agtacgtcaa gtacgtcgac gtcccgcaga actaccagga ttccgtcggc
     5101 ggcaccttct acatccagga gatggaagtc gtgcgcgagg atctcggccg gctgcgcggc
     5161 aagccgatca ccgacgccga gctgaacgac tcgatccgcg tctacaacga caaccgcgcc
     5221 gcggttcgcg agctctacgc ctatcgcgcc gccaagccct ggcaggcgcc gaccgccgag
     5281 gtgtacctgc tgctgcgggc cggcatggtg ctgccgcccg aggaccacac ggtgctggtg
     5341 cgcgagtaca ttgccgcgac cgaccgggtc ccccgcccga agcgcgacaa cgcccgggtc
     5401 gtgatcaacg gctcgttctg cgagcagccg ccgctcgggc tgatcaagtc gatcgagatg
     5461 tccggctgct acatcgtcga cgacgacttc atgctcgtca cccgctggct tctcgacgag
     5521 gtgccggccg acgcgaaccc gctcgacgag ctctcgaaag ccttcctgca ccgcagcgca
     5581 tcgacggccg cgaagtacga gacgacgcgc gaggaaaagg gcgtcttcct gatgaagcag
     5641 gtcaagaccg gcgctgccga gggcgtgatc ttcgcggcgc catcgttctg cgacccggcg
     5701 ctgctcgagc ggccgatgct gcaggacgtg ctcggcaaac acggcattcc ctacacggcg
     5761 ttcaagtacg ccgagaacac cggccagatg gctccgatcc gcgagcaggc cggcaccttc
     5821 gccgattcga tcaagctctg gagcgccgca tgaacacctc gaccatcgcc atgcccgccc
     5881 cgacgggcac cgccaagcgg ccgccgccgg tccagaaaga ggacgcgatg tggctgcaga
     5941 aggagctgat caaccgcaac tacatggagc tcgcgaccgc gcgggcgaac aaccgcaagg
     6001 tctcggcgac cttcgttcca ggcaacctga acgagttgct gatgtgcttc gatttcgcgc
     6061 gcagcctgcc ggagacgaac gcgctgcaga acggcatgcg caagaagagc ggcaagatga
     6121 tcatggacgc cgagcgcgac ggccagagcg aggacgtctg cacctatgtc aaggccgatc
     6181 tcggcatgat gatgggcggc gagatcggcc ccaccggcga gccgctgccg aagcccgaca
     6241 tcctgctcct gtcgtacacc ggctgcttca cgttcatgaa gtggttcgag ctgatccgcc
     6301 acaagtacgg ctgcgagacg gtgatgctcc acgtcccgta ccagggcgag gggcgcatcc
     6361 agccgaacat gcgcgaatac gtcgtcaagc agctgaagga gacggtgatc ccgacgctcg
     6421 agcgcatctc cggcgtcaag ttcgacatcg accggctgcg ccagtacatg cgcgagtcgg
     6481 tcaaggccga gaacgacctc gtcgcggtgc tgcagtcggc aaagcaccgg ccgagcccga
     6541 tcgacggcta cttcggcgcg gtctactaca tcgggccgat cttcaccgcc ttccgcggca
     6601 cgcccgaggc gaccgagtac taccgggtgc tccgcggcga gatcgagcag cgaatccgcg
     6661 acggcaaggg cccggtcacg cctgaaggcg agatgggcga ggagaagtac cggctcatcg
     6721 tcgaaggacc gcccaactgg acgagctttc gcgagttctg gaagatgttc tacgacgagg
     6781 gcgctgtcgt cgtcagctcg acctacgcca aggtcggcgg cctctacgac ttcggctttc
     6841 gccacgaccc ggaccacccg ctcgaatcgc tcgccgacta ctgcctcggc tgctacacca
     6901 acctgaacct gccgtcacgg atcgacatga tctgcaggta catcgacgag taccaggccg
     6961 acgggctgct gatcaactcg atcaagagct gcaacagctt ttccgc
//
LOCUS       DASVHM010000298         3931 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_889028, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000298 DASVHM010000000
VERSION     DASVHM010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3931
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_889028"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(85..1116)
                     /locus_tag="VF308_05680"
     CDS             complement(85..1116)
                     /locus_tag="VF308_05680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436177.1"
                     /translation="MRQGESPPYPPHVQEEVMAQRFDICNGDADGLCAALQWQLHDPA
                     PATLVTGLKREIALLERVNAKAGDDVNVFDLSLQRNRAPLLRLLDAGVRVRYFDHHAV
                     RDIPSHPLLEAQVDCASDVCTSLLVDRRIGGAFRAWALVGAYGDNLTRVADRLAVDSA
                     IGPCDSARLRRLGEAINYNAYGDDETDVRIAPARLFAILARYRDPRDMLAHEGIVDDI
                     DALRRADLQQAMAWPPHWQDARGSVLVLPDAPWSRRVLGCLANELANAEPEHAHAVLK
                     LQRSGAYAVSVRAPLAAPSGADALCSRFGGGGRARAGGIDDLPMADLERFLAAFAGTR
                     WGEQTPVRS"
     gene            complement(1147..1755)
                     /locus_tag="VF308_05685"
     CDS             complement(1147..1755)
                     /locus_tag="VF308_05685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011616326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEX7436178.1"
                     /translation="MLAQRLAVLKLVDPVVLALPRGGVPVAAEVARALHAPLDLLMVR
                     KIGAPGQRELAVAAVVDGDRPEIVIDEETLRWSGADRAYVDAEAKHELKEIERRRALY
                     LRGRAPVPLAGKSVVLVDDGIATGTTVRAALKALQRSKAARLVLAVPVAPADTVAQLR
                     DEVDDLLCLSQPAFFHAVGAHYRDFHQIEDDEVIALLDAASP"
     gene            complement(1880..>3931)
                     /locus_tag="VF308_05690"
     CDS             complement(1880..>3931)
                     /locus_tag="VF308_05690"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7436179.1"
                     /translation="SVLTVDRLLALGGTLSPVPRGAQDTAFLQYTSGSTGQPKGVVLT
                     HANLLANIRAMGQAVKADVRDVFVSWLPLYHDMGLIGAWMGSLYHGVPLVVMAPQAFL
                     ARPSRWLRAIHEHRGTLSAAPNFAYEILATKVPDDELQGLDLSAWRVAVNGAEPVHAA
                     TLTRFAERFRAHGFDPCAMMPVYGLAESGVGLAFPPLGREPKIDSIERQALHASGRAQ
                     PVPAAEERPGMQVVCCGQPLAGHEIRVVDARGAELPERSEGRIEFRGPSATSGYFHNP
                     DATRTLFHGDWLDTGDVGYVAEGEIYLTSRVKDLIIRGGHNIHPYDLEEAVGSLPGVR
                     KGCVAVFGALDPMSATDRIVVLAETHVSEPERRAALRERIAELSIALLGVPADDIVLA
                     DARTVLKTSSGKIRRAACRTLYEQGRLHATGRPVAWQLARLWLDALVRRAREPARRFA
                     AVFYSAWLWALFGLGAVAAVAAALLPTRGRRKRAARWIGRLVLRASLLPLTIEGAEHL
                     GTGVAVVAVNHESYVDWLLLTAILPAQMSFVAKRELAQSGPLRWLLVRMGTRFVERDD
                     VHSSVEDAKVLLRAAQAGESLVFFPEGTLTRAPGLQGFHMGAFVTAAQADVALLPVSL
                     RGTRSVLRDGSWQPHRHPVHVHVHAPLRARGKDWRDALQLRDAARERIAATCGEPVLP
                     T"
BASE COUNT          604 a         1428 c         1358 g          541 t
ORIGIN      
        1 agccgaggcg ccggcccggc gcaactgccg gcgcgcgcgc gcacggcagg tcggcgatga
       61 gtgcgccgac ccgagccgcc gccatcatga gcgcacggga gtctgctcgc cccagcgcgt
      121 gccggcgaag gccgcgagaa agcgctcgag atcggccatc ggcaggtcgt cgatgccgcc
      181 ggctcgcgcg cggccgcccc cgccgaagcg gctgcacagg gcatcggcgc ccgatggcgc
      241 cgcaagcggc gcgcgcacgc tgaccgcata cgcgccgctg cgctgcagct tcaataccgc
      301 atgggcgtgc tcgggctcgg cgttggccag ctcgttggcg aggcagccga gcacgcgccg
      361 gctccacggc gcgtcgggca gcacgagcac gctgccgcgt gcgtcctgcc aatgcggcgg
      421 ccaggccatg gcctgctgca ggtcggcgcg gcgcagcgcg tcgatgtcgt cgacgatacc
      481 ttcgtgcgcg agcatgtcgc gcggatcgcg gtagcgcgcc aggatcgcga agagacgcgc
      541 cggcgcgatc cgaacatcgg tctcgtcgtc gccgtacgcg ttgtagttga tcgcctcgcc
      601 gagccggcgc agacgagcgc tgtcgcacgg gccgatcgcg gaatcgaccg ccaggcgatc
      661 ggcgacgcgc gtcaagttgt cgccgtaggc gccgaccagc gcccaggcgc gaaacgcccc
      721 gccgatgcgg cggtcgacca gcaggctggt gcagacgtcg ctggcgcagt cgacctgcgc
      781 ttcgagcaag ggatgggacg gaatgtcgcg caccgcatgg tgatcgaagt agcgcacgcg
      841 cacgccggca tcgagcaagc gcagcagagg ggcccggttg cgttgcagcg acaggtcgaa
      901 gacgttgacg tcgtcgccgg ccttcgcgtt gacgcgctcg aggagcgcga tctcgcgctt
      961 cagcccggtc accagcgtgg ccggcgccgg gtcgtgcaac tgccactgca gcgcggcgca
     1021 caggccgtcg gcgtcgccgt tgcagatatc gaatcgctgc gccatcacct cttcctgcac
     1081 atgcggcgga tacggcggcg attcgccctg ccgcaccgcc gtgccccttt gcagattctc
     1141 gacccttcag ggacttgccg cgtcgagcag cgcgatgact tcgtcgtcct cgatctgatg
     1201 gaagtcgcgg tagtgcgcgc cgaccgcgtg gaagaacgcc ggctgtgaca ggcacagcaa
     1261 gtcgtcgacc tcgtcgcgga gctgtgccac ggtatcggcc ggcgcgaccg gcacggcgag
     1321 caccaggcgg gccgccttgg aacgctgcag cgccttgagt gcggctcgca ccgtcgtgcc
     1381 ggtggcgatg ccgtcgtcca ccagcaccac ggacttgccg gccagcggca ccggcgcacg
     1441 cccgcgcagg tagagcgcgc ggcggcgttc gatctccttc agttcatgct tcgcctcggc
     1501 atcgacgtag gcccggtcgg cgccgctcca gcgcagggtc tcctcgtcga tcacgatctc
     1561 gggacggtcg ccgtcgacca ccgcggccac ggccagttcg cgctgaccgg gtgcgccgat
     1621 cttgcgcacc atcaacaggt ccagcggtgc atgcagcgcg cgggcgacct cggctgccac
     1681 cggcacgccg ccacgcggca gcgccagaac cacgggatcg accagcttga gcacagccag
     1741 gcgctgcgcc agcaagcgcc ccgcctcgac gcgatccatg aaggcttcca tgcccgtgag
     1801 gatcgcgcaa gcgcctgttc cggacttgcg gtgcgtcaat gtttgtgacg cggcgccgcg
     1861 gcagcaccct tgtgcaagct caggtcggca gcaccggctc cccgcaggtc gccgcgatgc
     1921 gttcccgcgc tgcatcacgc aactgcagcg cgtcgcgcca gtccttgccc cgggctcgca
     1981 gcggtgcatg cacatggacg tgcaccgggt ggcggtgcgg ctgccaggag ccgtctctca
     2041 ggaccgagcg cgtgccgcgc aggctgacgg gcagcagcgc cacgtcggcc tgcgcagccg
     2101 tcacgaacgc acccatgtga aatccctgaa gtccgggcgc gcgcgtcagc gttccctcgg
     2161 gaaagaacac cagcgactca ccggcctgcg ccgcccgcag caataccttc gcgtcctcca
     2221 cgctgctgtg cacatcgtcg cgctcgacga agcgcgtgcc catgcgcacc agcagccaac
     2281 gcaacggccc ggactgcgcc agttcgcgct tggcgacgaa gctcatctgc gccggcagga
     2341 tggcggtgag caacagccag tccacgtagc tctcgtggtt gacggccacc accgccacgc
     2401 cggtccccag gtgttcggcg ccctcgatgg tgagcggcag cagcgacgcg cgcagaacca
     2461 gcctcccgat ccaccgcgcc gcgcgcttgc gccggccgcg cgtgggcagc aacgcggcgg
     2521 ccaccgccgc cacggcaccg agaccgaaca gggcccagag ccacgccgaa tagaacacag
     2581 ccgcgaagcg ccgcgccggc tcgcgtgcgc ggcgcacgag cgcatcgagc cacaaccgcg
     2641 cgagctgcca ggcgaccggc cggccggtcg cgtggagccg gccttgctca tacagcgtgc
     2701 ggcaggcggc gcggcggatc ttgccgctgg acgtcttcaa taccgtgcgc gcgtcggcca
     2761 gcacgatgtc gtcggccggc acgccgagca acgcgatcga gagttcggca atgcgttcgc
     2821 gcaacgcggc gcgccgctct ggctcgctca cgtgcgtttc cgccagcacg acgatgcgat
     2881 cggtcgcgct cattgggtcg agggcgccga acacggccac acagcccttg cgaacccccg
     2941 gcaggctgcc gactgcctcc tccaagtcgt acgggtgaat gttgtggccg ccgcgaatga
     3001 tcaggtcctt cacccggctg gtcaggtaga tctcgccttc ggcgacgtag ccgacgtcgc
     3061 cggtgtcgag ccagtcaccg tgaaagagcg tccgtgtggc gtccgggttg tggaagtaac
     3121 ccgaggtcgc cgacgggccg cggaactcga tgcggccttc gctgcgttcg ggcagctccg
     3181 cgccgcgcgc atcgacgacg cggatttcgt gtcccgccaa cggttgaccg cagcagacga
     3241 cctgcatgcc gggtctctcc tcggccgcag gcaccggctg ggcgcgaccg gaagcgtgca
     3301 gcgcctgacg ctcgatggag tcgatcttcg gttcgcgccc gagcggcgga aacgcgagcc
     3361 cgacgccgct ttcggccagg ccgtacaccg gcatcatcgc gcacggatcg aacccatggg
     3421 cccggaaccg ctcggcaaag cgcgtcagcg tggccgcatg caccggctcg gcgccgttga
     3481 ccgcgacgcg ccaggcgctg agatccaggc cttgcagctc gtcgtccggc accttcgtcg
     3541 cgaggatctc gtaggcgaaa ttcggcgcgg ccgacagcgt gccgcgatgc tcgtggatcg
     3601 cgcgcagcca gcgcgacggg cgcgccagga aggcctgcgg cgccatcacg accagcggaa
     3661 cgccgtgata gaggctgccc atccaggcac cgatcagccc catgtcgtgg tagagcggca
     3721 gccagctcac gaagacatcg cgcacgtccg ccttcacggc ctgccccatc gcgcggatgt
     3781 tggccagcag gttggcgtgt gtcaggacca cccccttcgg ctgtccggtg ctgcccgacg
     3841 tgtattgcag gaacgcagtg tcctgcgcgc cccgtggcac cgggctcaac gtgccgccga
     3901 gggcgagcag gcggtcaacc gtgagcaccg a
//
LOCUS       DASVHM010000299         3868 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_600111, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000299 DASVHM010000000
VERSION     DASVHM010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3868
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_600111"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..767
                     /locus_tag="VF308_05695"
     CDS             <1..767
                     /locus_tag="VF308_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018443947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HEX7436180.1"
                     /translation="ASGLSLSKLRPFAASFFIFTDYCRGAIRLSAMMGIPVIYIWTHD
                     SISMGEDGPTHQPIEQLASLRAMPGIVLLRPADANEVVEAWKVIMGLTDRPASLVLTR
                     QALPTLDRSQYASASGVARGAYVLADAADGKPDVLLLATGGEVALCIAAYEQLKSEGI
                     AARVVSMPSWDLFESQSVEYRDSVLPNDVAARVSVEAASPLGWERYVGRRGAIIGMRS
                     FGLSAPGQVVEAHFGFDVAHVVAAARQQLARHVPTA"
     gene            775..2487
                     /gene="pgm"
                     /locus_tag="VF308_05700"
     CDS             775..2487
                     /gene="pgm"
                     /locus_tag="VF308_05700"
                     /EC_number="5.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004614 - phosphoglucomutase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucomutase
                     (alpha-D-glucose-1,6-bisphosphate-dependent)"
                     /protein_id="HEX7436181.1"
                     /translation="MATRINPLAGTPAPPSSLVDVAKLVTAYYSEQPDPTVSAQRVAF
                     GTSGHRGSAFDGSFNEWHVLAITQAICQYRKAKGIDGPLFLGIDTHALSQPACASALE
                     VLAAHGVDVMLAANDEYTPTPAISHAILTHNRGRSAGLADGIVVTPSHNPPRDGGFKY
                     NPPNGGPAGRDITDWIEAAANRLLEERLEGVKRISHAKALAAATTRRHDFLDAYVGDL
                     GHVIDMDLIRDAKIRMGVDPLGGAGVHYWAAIAERYRLDLTVVSELVDPTFRFMTLDW
                     DGQIRMDPSSPYAMQRLLDIKDRFDIAFACDTDHDRHGIVTRGAGLLAPNHYLSVAID
                     YLFQNRPQWGARAAVGKTVVSTGLIDRVTARLGRKLYEVPVGFKWFVTGLQDGSLGFG
                     GEESAGATFLRRDGSVWTTDKDGMIAALLSAEITARSGRDPGALYVDLAHELGNPAAD
                     RVDAPATAQQKKQLAALSPQQLGSTELAGEKIESILSNAPGNGAAIGGIKVIAGSGWF
                     AARPSGTEDIYKIYAESFNGPEHLQRILEEAQTIVDAAISPAPSSPAATPAAARSAFA
                     KGPG"
     gene            2484..3809
                     /locus_tag="VF308_05705"
     CDS             2484..3809
                     /locus_tag="VF308_05705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014005710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEX7436182.1"
                     /translation="MNGRSPMPALAAEDATSRADDVMLDRLQHAAFDYFLKTSNPQNG
                     LIADTTRDGSPSSIAVVGFALSAYTVGVERGWIERADAAQRALDALRCFWNSDQTGSV
                     GATGYRGYYFHFLDMRSGARVWQSELSLIDTALLLAGMLTAAAYFTAATPAEVELREL
                     ADALYRRVDWRWAQRDGSAVAHGWKPECGFLNYGWEGYNEALLLYILGLGSPTHPLTE
                     ESFQAWTVTYQWENLYGHDFLYAGPLFIHQFSHAWIDFRGIQDRFMREKGCDYFENSR
                     RATYVQREYATRNPRGFIGYADDCWGLSAGDGPSVEPRLVAGRRQAFYGYAARGVPWG
                     PDDGTIAGSSTLASLVFAPEIALPALRKLHARGTRGQGGTLRASGFNATAHEPGADCW
                     ISEGEFGLDQGMIVLMIENFRSGLMWRLGRSCTYIQTGLHRAGFRGGWL"
BASE COUNT          642 a         1298 c         1291 g          637 t
ORIGIN      
        1 ttgccagcgg cctgagcctg tcgaagctgc gtccatttgc ggccagcttc ttcatcttca
       61 ccgactactg tcgcggtgcg atccggctca gcgcgatgat ggggattccg gtcatctaca
      121 tctggaccca tgattcgatc agcatgggcg aggacgggcc gacgcatcag ccgatcgagc
      181 aactcgcgtc gttgcgggcg atgcccggca tagtgctgct gcgcccggcc gacgcgaacg
      241 aagtggtcga ggcgtggaag gtgatcatgg gcctcaccga ccggccggcg agcctggtgc
      301 tgacacgaca ggcgctgccg acgctcgacc ggagccagta cgcaagcgcc agcggcgtcg
      361 cgcgcggcgc ctacgtgctc gccgacgcgg ccgatggcaa gcccgacgtg ctgctgctgg
      421 cgaccggcgg cgaagtcgcg ctctgcatcg ccgcctacga acaactcaag agcgaaggga
      481 tcgctgcccg cgtcgtcagc atgccgtcgt gggacctgtt cgaaagccag agtgtcgaat
      541 accgcgacag cgtgctgccg aacgacgtgg cggcgcgagt ctcggtcgag gcggcatcac
      601 cgttgggttg ggagcgctat gtgggccggc gcggcgcgat catcggcatg cgctcgttcg
      661 ggctgtcggc gccgggccaa gtcgttgagg cgcatttcgg cttcgatgtc gcgcacgtcg
      721 tcgctgcggc caggcaacag ttggcgcgac atgtgccgac cgcttgagcc gaccatggcg
      781 acccggatca accccctcgc cggcaccccg gcgccgccgt cgtcgctcgt cgacgtggcc
      841 aagctcgtca ccgcgtacta ctcggagcaa cccgacccca cagtctcggc gcagcgcgtc
      901 gccttcggta cgtcggggca ccgcggttcg gcgttcgatg gctcgttcaa cgaatggcat
      961 gtgctggcga tcacgcaggc gatctgccag taccgcaaag ccaaagggat cgacggaccg
     1021 ctcttcctcg gcatcgacac acatgcgctg tcgcagccgg cgtgcgcgag cgcgctcgaa
     1081 gtgctggcag cccatggcgt cgacgtgatg ctggcggcga atgacgaata cacgccgacg
     1141 ccggcgatct cgcacgcgat cctgacccac aaccgcgggc gcagcgccgg gctggccgac
     1201 ggcatcgtcg tgacgccctc gcacaacccg ccgcgcgatg gtggcttcaa gtacaacccg
     1261 cccaacggcg gcccggccgg ccgggacatc accgactgga tcgaagccgc ggccaatcgc
     1321 ttgctcgaag agcgcctcga aggcgtgaag cgcatttcgc acgcgaaggc ccttgcagcc
     1381 gcgacgacgc gccgccacga ttttctcgac gcctacgtcg gcgacctcgg tcacgtgatc
     1441 gacatggact tgatccgcga cgcgaagatc cggatggggg tcgacccgct gggcggcgcc
     1501 ggagtccact attgggccgc gatcgccgaa cgctatcgcc tcgatctgac ggtcgtcagc
     1561 gagctcgtcg acccgacgtt tcgcttcatg acgctcgact gggacggaca gatccgcatg
     1621 gatccgtcgt cgccatacgc gatgcagcgg ctgctcgaca tcaaggaccg cttcgacatc
     1681 gccttcgcct gcgacaccga tcacgaccgc cacggcatcg tcacccgagg tgccggcttg
     1741 ctggcgccga accactacct gtcggtcgcc atcgactacc tgtttcagaa ccgcccgcaa
     1801 tggggggcgc gcgctgcggt cggcaagacc gttgtcagca cggggctgat cgaccgggtg
     1861 acggcgagac tgggccgcaa actctacgag gtgccggtcg gtttcaaatg gttcgtgacg
     1921 ggtctgcagg acggctcgct cggcttcggc ggcgaggaga gcgccggcgc gacgttcctg
     1981 cgtcgcgacg ggtcggtctg gaccaccgac aaggacggca tgatcgcggc gctcctctcg
     2041 gccgagatca ccgcacgcag cggccgcgac cccggtgcgc tgtatgtcga tctggcgcac
     2101 gaactcggca acccggcggc agacagggtc gacgcacctg cgaccgcgca gcagaagaag
     2161 caactggctg cgctgtcgcc gcaacagctc gggtcgaccg aactggccgg ggaaaagatc
     2221 gagagcatcc tcagcaacgc acccggcaat ggtgccgcga tcggcggcat caaggtcatc
     2281 gcgggcagcg gctggtttgc tgcgcggcct tcgggcaccg aagacatcta caagatctat
     2341 gcggagagtt tcaacggccc cgagcacctg cagcgcatcc tggaagaggc gcaaacaatc
     2401 gtcgacgccg cgatctctcc tgcgccttcc tctccggccg ccactcccgc tgctgctcgc
     2461 tccgcctttg ccaaggggcc ggggtgaacg ggcggtcgcc gatgcccgcg ctcgccgcgg
     2521 aagacgcgac gagtcgtgcc gacgacgtga tgctggatcg tctgcagcat gccgcgttcg
     2581 actacttcct gaagacctcg aacccgcaga atggcttgat cgccgacacg acacgcgacg
     2641 gttcgccgtc gagcatcgcg gtggtcgggt tcgcgctctc ggcgtacacg gtcggggtcg
     2701 agcgcggctg gatcgagcgc gccgatgccg cgcagcgcgc cctcgacgcc ttgcgttgct
     2761 tctggaacag cgaccagacc ggcagcgttg gcgcgaccgg ctaccgcggc tactactttc
     2821 actttctgga catgcgaagt ggcgctcggg tgtggcagtc ggaactgtcg ctgatcgaca
     2881 ccgcattgct gctcgccggg atgctgaccg cggccgccta tttcaccgcc gccacgccgg
     2941 ccgaagtcga acttcgcgaa ctggccgatg ccttgtaccg aagagttgac tggcgctggg
     3001 cgcagcgcga cggctcggcc gtggcgcacg gctggaagcc cgagtgcgga ttcctgaact
     3061 acggctggga gggctacaac gaggcgctcc ttctctacat cctcggcctg gggtcgccga
     3121 cccatccgtt gacagaagaa agcttccagg cctggaccgt gacctaccaa tgggagaacc
     3181 tgtacgggca cgacttcctc tatgccggcc cgctcttcat tcaccagttc tcgcatgcgt
     3241 ggatcgactt tcgcggcatc caggatcgct tcatgcgcga gaaaggttgc gactatttcg
     3301 agaacagccg ccgcgcgacc tatgtgcagc gcgaatacgc gacgcgcaat ccgcgcggct
     3361 tcatcggcta cgccgacgac tgctggggcc tttcggcagg cgacggcccg agcgtcgaac
     3421 cgcggttggt cgctggccgg cggcaggcgt tttacggcta tgccgcgcgt ggcgtaccgt
     3481 ggggaccgga cgacggcacc atcgccggct cgtcgacgct ggcgtcgctg gtgtttgcac
     3541 cggagatcgc gctgccggcg ctgcgcaagc tccatgcccg cggaacgcgg ggccagggtg
     3601 ggacgctgcg tgccagcggt ttcaatgcaa ccgcccacga gcccggagcc gactgctgga
     3661 tctccgaagg cgagttcgga ctcgatcagg ggatgatcgt gttgatgatc gagaactttc
     3721 gttccggact gatgtggcgg ctcggccgaa gctgcaccta catccagacc ggcctgcatc
     3781 gagctgggtt cagaggcggt tggctgtagt cgccacgcgc cgtgacgatg ctgcccgggc
     3841 aggcttcaga cactcgctcc gtcgagag
//
LOCUS       DASVHM010000300         1825 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_961267, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000300 DASVHM010000000
VERSION     DASVHM010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_961267"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..980)
                     /locus_tag="VF308_05710"
     CDS             complement(126..980)
                     /locus_tag="VF308_05710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018905820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436183.1"
                     /translation="MNPVASGALLRFFRADRLGLLGAALLLVLVILGAAGPYLPLGDS
                     EAIGAGPRLGAPSLAFLMGTDELGRDYLPRVVEGIGATFFLSSIAVMLTALIGTLLGM
                     AAGYLHGYADTAIARVADVLFAFPALLFGLLAAAVLGPGNIAAIVVISTATLPLFIRV
                     IRSVTLAVAEREFVIAAVVSGATTWRVLIVHILPNVLGAAIIQLTYALSIGMLIESGL
                     SFLGLGVQPPRASLGSLLRLGSVYLTVSPWMVLIPGLILALAIMSVNLLGDAIRDALE
                     PLRGRPLT"
     gene            complement(977..>1825)
                     /locus_tag="VF308_05715"
     CDS             complement(977..>1825)
                     /locus_tag="VF308_05715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015866039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436184.1"
                     /translation="LGPFATAEMRALIGAKYGLDQPIVVQFAKWLAALVRGDFGNSMV
                     TGKPVLAELLRRAPVTAELATLTLALVLAIGFPLGVWSGVVESRAAGKSHTGRLVGAL
                     GASVPEFVIGSVLIFVFSRWSLGLKVGGFVPLAENPWGNLKTVLLPTASLCIFGIALI
                     LRTTRDAVLRIMTEGHILAAVGRGEKPSAIVRHHILRNASIPIVTVTATYFGYLLGGA
                     VIAEILFSIPGVGYYIFSSLEGRDYAVVQAGVLLAALVFVTLNMLADVAYALIDPRIG
                     ANRSGR"
BASE COUNT          341 a          612 c          653 g          219 t
ORIGIN      
        1 gctctcgccg acgatgccga ggctttcacc cgcgccgagc gccaggtcga cgccgtcgac
       61 cgcgcacacc gcgccgtcgt cgatgcggta cgagatcgag aggtcgctga tctcgatcag
      121 gccgctcatg tcaggggccg cccgcgcaac ggctcgagcg cgtcgcggat cgcgtcgccg
      181 agcaggttca cggacatgat cgctagcgcc aggatcaacc ccgggatcag gaccatccat
      241 ggcgacaccg tgaggtacac gctgccgagg cgcaacagcg atccgaggga agcacggggc
      301 ggttgcacgc cgaggccgag aaagctcagg ccgctttcga tcagcatccc gatcgagagc
      361 gcataggtga gctggatgat cgccgcgccg aggacgttcg gcaggatgtg cacgatcagc
      421 acacgccagg tcgttgcccc ggataccacc gccgcgatga cgaactcgcg ttcggcgacc
      481 gcgagcgtca ccgagcggat gacccggatg aagagcggca gcgtcgcggt cgagatcacg
      541 acgatcgcgg cgatgttgcc ggggccgagc accgcggccg cgagcagccc gaagagcagg
      601 gcggggaacg cgaacaggac atcggcgacc cgggcgatcg cggtatcggc gtaaccgtgc
      661 agatagcccg ccgccatgcc gagcagcgtg ccgatgagcg ccgtgagcat gaccgcgatc
      721 gacgacagga agaaggtcgc gccgatgccc tcgacgactc gcggcaggta gtcgcggccg
      781 agttcgtcgg tgcccatcag gaatgcgagg ctcggcgcgc cgagccgggg cccggcgccg
      841 atcgcctccg aatcgccgag cggcaggtac ggcccggcgg cgccgaggat caccaggacg
      901 aggagcaagg cggccccgag caggccgagg cgatcggcgc ggaagaagcg cagcagcgcc
      961 ccggacgcca ccggattcat cggccgctcc ggttcgcgcc gatgcgcgga tcgatcagcg
     1021 cgtaggccac gtcggccagc atgttgagcg tcacgaagac gagcgcggcg agcagcacgc
     1081 cggcctgtac gacggcgtag tcgcgcccct cgagcgagct gaagatgtag tagccgacgc
     1141 cggggatcga gaacaggatc tcggcgatca cggcgccacc gagcaggtag ccgaaatagg
     1201 tggcggtcac ggtcacgatc gggatcgacg cgttgcgcag gatgtggtgg cggacgatcg
     1261 ccgagggctt ttcgccgcgc ccgaccgcgg ccaggatgtg accctcggtc atgatccgta
     1321 acacggcgtc gcgcgtcgta cgcaggatca gcgcgatgcc gaagatgcag agcgacgcgg
     1381 tcggcagcag caccgtcttc aggttgcccc aggggttctc ggcgagcggc acgaagccgc
     1441 cgaccttcag gcccagcgac catctggaaa agacgaagat cagcacgctg ccgatcacga
     1501 attcgggcac gctcgcaccg agcgcgccga ccaggcggcc ggtgtgggac ttgcccgccg
     1561 cgcggctctc cacgacgccg ctccagacgc cgagcggaaa cccgatcgcg agcaccaggg
     1621 cgagcgtcag cgtcgcgagc tcggcggtga ccggcgcgcg ccgcaacagt tcggcgagca
     1681 ccggcttgcc ggtcaccatc gaattgccga agtcgccgcg caccagcgcc gccagccact
     1741 tcgcgaactg gaccacgatg ggctggtcga ggccgtactt ggcaccgatg agcgcgcgca
     1801 tttccgcggt cgcgaaggga ccgag
//
LOCUS       DASVHM010000301         4472 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_814615, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000301 DASVHM010000000
VERSION     DASVHM010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4472)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4472)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4472
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_814615"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..603)
                     /locus_tag="VF308_05720"
     CDS             complement(<1..603)
                     /locus_tag="VF308_05720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007852078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX7436185.1"
                     /translation="MQEALVQIAQADAVRTLTLNRPKSLNSFTGLLHAELLAAFEAAA
                     ADPGVRCVVLTGAGRGFCAGQDLSDPSVAPKLEPGAAATDIGAAIERFYMPLALRIRS
                     MPVPVLAAVNGVAAGAGANIALGCDIVIAARSASFIQAFSKIGLVPDAGGTWLLPRLA
                     GRARALGLAMLGDKLPAEDAERLGLIWKCVDDAAFADEVRA"
     gene            797..1192
                     /locus_tag="VF308_05725"
     CDS             797..1192
                     /locus_tag="VF308_05725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436186.1"
                     /translation="MARSSILGGERAPVRSPGHDTSALGPSDSSDSGSDVQNEHGFDA
                     LGAGAIGADRADLASDSDACGTGERGAAVHDTDIVEGADIAPDRIGVFTARGARKDAR
                     ALDDPGAVDLDALAADDEPVLDDESDDAG"
     gene            1369..1635
                     /locus_tag="VF308_05730"
     CDS             1369..1635
                     /locus_tag="VF308_05730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436187.1"
                     /translation="MAADAPDTPYEKTTRLTPAWNLDASLYVKDTSEWIARCLARVQA
                     LDPMLPGGEAEAAVRELSLLERWRVMAPEAAAEQLYAPIKPRPG"
     gene            complement(1652..2962)
                     /locus_tag="VF308_05735"
     CDS             complement(1652..2962)
                     /locus_tag="VF308_05735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013542482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7436188.1"
                     /translation="MRAGSFIGGLSRAARQSPGTPPPAANASDASAAAYCLTPEPFSL
                     RTIAISAFAPSLLFGLGEGAILPIVALSVRDLGGSVALAALIVTLIGIGSLLSNIPAS
                     LITTRYGERWAIVGAAVWGALAMLLCVAVGKLWTFAIGIFMVGMSAAVFGLARQSYLT
                     EVVPVHFRARALSTLGGVMRIGLFIGPFVAAACIHVAGLAGAYWVGICALTLAALVAA
                     RIPDLPHHAAAAPSATLVELAAPTLRSITFGHRRIFLTVGIGVLLVSAVRASRQVVIP
                     LWADHIGLEATVASLIYGLAGGVDMLVFYPAGKLMDRKGRNWVAVPSMAIMGLALMLT
                     PFAQGATALLLASLLIGFGNGIGSGMVMTLGADYSPSPGRAHFLGIWRLLSDIGASGG
                     PALLAALTATLSLAAGIWSTGLLGFVAAAVLWYWIPRIRTGRAA"
     gene            2943..3863
                     /locus_tag="VF308_05740"
     CDS             2943..3863
                     /locus_tag="VF308_05740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019427301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7436189.1"
                     /translation="MNEPALIAAQAPAAQLRLAYALLFVTPAFWSVNYLVARWAPGVL
                     APHALALGRWWVATLVLAAFCQAELWAKRDRIAGEAPQFLVLGALGMWVCGAFVYIGG
                     RSTTAVNIGLLYGVAPVLIALASALWLRERIDAAQMLGAALAFAGMLHILFKGRWDTL
                     ERLRINPGDAWVAVAVLSWTAYSLLLRAWPSAFGPLARLTLIACGGIVVLLPFTVWEA
                     LAWLPSELSWKSAGLILAAALLPGVGAYGAYSFMQRALGAARVGMVLYLGPLYSAALA
                     WLVLGERIEWFHVVGALLILPGIWLSTRKA"
     gene            complement(4269..>4472)
                     /locus_tag="VF308_05745"
     CDS             complement(4269..>4472)
                     /locus_tag="VF308_05745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436190.1"
                     /translation="DIELGGTDLALADTGFPTNLGTGNFLAQLEVGVKGNNGFDYRPG
                     AAYPLNNEYIGISVSVPEPETMR"
BASE COUNT          760 a         1555 c         1527 g          630 t
ORIGIN      
        1 ggcgcgaacc tcatccgcga aagccgcgtc gtcgacgcac ttccagatca gtccgagccg
       61 ttccgcgtct tcggcgggca gcttgtcgcc gagcatcgcc aggcccaacg ccctggctcg
      121 gccggcgagg cgcggcagca accaggtgcc acccgcatcg ggcacgaggc cgatcttcga
      181 gaacgcctgg atgaagctcg ccgagcgtgc cgcgatcacg atgtcgcagc cgagcgcgat
      241 gttcgcaccg gcgccagcgg ccacgccgtt gacagctgcg agaaccggca ccggcatcga
      301 gcggatgcgc aaggccagcg gcatgtagaa gcgctcgatc gcggcgccga tgtcggtcgc
      361 ggcggcgccc ggctcgagct tgggtgcgac gctcgggtcg gacagatcct gcccggcgca
      421 aaaaccgcgc ccggccccag tgagcaccac gcagcgcacg ccgggatcgg cggcggcggc
      481 ttcgaatgcg gccagcaact cggcgtgaag cagcccggtg aagctgttca acgacttcgg
      541 ccgattgagc gtcaacgtgc gcaccgcatc ggcttgcgcg atctgcacca gggcttcttg
      601 catgcgattc gtccttccgc cgatcggcgc ttcgctcgcc aacttgacat tatattcgac
      661 cgaacggtag aaagagttta aggccgaggc gccgcgcgag cgcctgcaag gagcatggac
      721 aagggctttc cccgagagca ggattggggt gggcatccgg cttgccgcgc ctcattcaac
      781 acacacggag agcaacatgg cacgaagcag catcctcggc ggcgagcgcg cgccggtccg
      841 gtcccccggc cacgacacca gcgcgctcgg accaagcgac agttccgaca gcgggagcga
      901 tgtgcagaac gagcacggtt tcgacgccct cggcgccggc gcgattggcg ccgaccgggc
      961 cgacctcgcc agcgacagcg acgcttgcgg caccggcgaa cgaggcgcgg cggtccacga
     1021 caccgacatc gtcgaaggcg ccgacatcgc cccggaccgc atcggagtct tcacggcccg
     1081 gggcgcgcgc aaggacgccc gcgctctcga cgaccccggg gcggtcgatc tcgacgcgct
     1141 ggccgccgat gacgaaccgg tcctggacga cgaaagcgac gacgccggct gacgcatgaa
     1201 cccgcgccgc tgacgtgctc accggtatgt ggaccacgcc gcagctgatc gctcctttcc
     1261 acaacgcgcg ggatgaggtg ggcatggggt tcggggtggc gtgggaaaga acctacgacg
     1321 cggtcgatgg aataatcgcg ccggtcccca cgagcaggag gagccgcgat ggcagccgac
     1381 gcgcccgaca caccgtacga gaagacgact cggctcaccc cggcgtggaa cctcgacgcc
     1441 tcgctgtacg tgaaggacac gtcggaatgg atcgcacgct gcctcgcgcg cgtccaggcg
     1501 ctcgacccga tgctgccggg cggcgaggcc gaagcggcgg tgcgtgaact gagcctgctc
     1561 gaacgctggc gcgtgatggc gccagaggcg gcggccgagc aactctacgc gccgatcaag
     1621 ccgcgcccgg gctgaagccg agtcgacgag gctatgccgc gcgacccgtc cggatgcgcg
     1681 gaatccagta ccagagaact gccgcggcga cgaagccgag cagcccggtc gaccagatgc
     1741 ctgcggcaag ggagagcgtc gccgtcaacg ccgccagcag cgccggcccg cccgacgccc
     1801 cgatgtcgga gaggagccgc cagatgccga ggaagtgggc gcgaccgggc gagggcgaat
     1861 agtcggcgcc gagcgtcatc accatgcccg agccgatgcc gttgccgaag ccgatcagca
     1921 gcgaagcgag cagcaaggcc gtggccccct gggcgaacgg cgtcagcatc agggccaggc
     1981 ccatgatcgc catcgacggc accgccaccc agttgcgacc cttgcggtcc atgagcttgc
     2041 cggcggggta gaacaccagc atgtcgacgc cgccggccag gccgtagatg agcgaggcga
     2101 ccgtcgcctc gaggccgatg tggtcggccc aaagcggtat gacgacctgg cgcgaggccc
     2161 gcaccgcgct caccagcagc acgccgatgc cgacggtgag aaagatgcgc cggtggccga
     2221 aggtgatcga cctgagcgtc ggcgccgcga gctcgacgag cgtcgcgctc ggcgccgcgg
     2281 cggcgtgatg cggcagatca ggaatgcgcg cggccactag cgcggccagc gtcagcgcgc
     2341 aaatgccgac ccagtaggca ccggccaggc cggcgacatg aatgcatgcc gccgcaacga
     2401 acggcccgat gaacaagccg atgcgcatca cgccgccgag cgtcgacaag gcccgggcgc
     2461 ggaagtggac gggcacgact tcggtcaggt agctctgccg cgccaggccg aagaccgcgg
     2521 ccgacatgcc caccatgaag atgccgatcg cgaaggtcca gagcttgccg accgcgacgc
     2581 agagcagcat ggcgagggcg ccccagacgg cggccccgac gatcgcccag cgttcgccat
     2641 agcgcgtcgt gatcagcgag gccgggatgt tgctgagcag cgagccgatg ccgatcaggg
     2701 tgacgatcag cgccgcgagc gccaccgagc cgccgagatc gcgcacgctc agtgccacga
     2761 tgggaaggat cgcgccttcg ccgagaccga agaggagcga cggcgcgaaa gccgagatgg
     2821 caatcgtgcg cagactaaac ggttcaggag tcaagcaata agctgccgcg ctggcatccg
     2881 atgcattcgc cgccggcggc ggagtaccgg gcgattgtcg cgccgcccgc gacaatccgc
     2941 cgatgaacga gcctgccctc atcgcggcgc aagcgcccgc cgcccagctg cgcctcgcct
     3001 atgcgctgct cttcgtcacc ccggctttct ggagcgtgaa ctacctggtc gcgcgctggg
     3061 cgcctggcgt gctcgctccg catgcgctgg ccctcggccg ctggtgggtg gcgaccctcg
     3121 tcctggccgc gttctgccag gccgaactct gggccaagcg cgatcgcatc gccggcgagg
     3181 cgccgcaatt tctcgtgctc ggcgctctcg gcatgtgggt ctgcggcgcc ttcgtctaca
     3241 tcggcggacg cagcacgacc gcggttaaca tcggcctctt gtacggcgtg gccccggtgc
     3301 tgatcgcgct ggcctcggcg ctctggctgc gcgaacgcat cgacgcggcg cagatgctgg
     3361 gcgccgcgct cgccttcgcg gggatgctgc acatcttgtt caagggccgc tgggacaccc
     3421 tcgagcgcct gcgcatcaat cccggcgacg cctgggtcgc ggtcgcggtg ctgagctgga
     3481 ccgcctattc gctgctgctg cgcgcgtggc cgtccgcgtt cgggccgctg gcgcgcctga
     3541 cgctgatcgc ctgcggcggc atcgtcgtgc tgctgccgtt caccgtctgg gaggcgctgg
     3601 cctggctgcc ttccgagctc tcgtggaaga gcgcggggct gatcctcgcg gccgcgctgc
     3661 tgcccggggt cggcgcctac ggcgcgtact cgttcatgca gcgcgcgctc ggcgcggcgc
     3721 gggtcggcat ggtgctctac ctcggcccgc tctacagcgc cgcactcgcc tggctcgtgc
     3781 tcggcgaacg catcgagtgg tttcacgtcg tcggcgcgct gctgatcttg ccgggtatct
     3841 ggctgtcgac gcgcaaggct tgacgtccac agcgcccgct gccccggggt ccgttcacca
     3901 atgaaaacgg ggcacccaag gcaccccgtt tcacttctga tggttggtag gcgcgaatcc
     3961 cacggccggc tttgacgttt ttccagagcc tgggtgtcag ccgctgcctt gaacacgccc
     4021 aatcacggta cgaatcgacc gcgacggctt catccgggaa gagaggttcc cgtcaaagac
     4081 cgacgccgcg caccggtaac catcccccgg caaagccggc agagccgggg ggcctcccct
     4141 ggtagctagc cgaagatggc caagacaccg accgcgtgaa gcggccaggt cctggcctgc
     4201 aggtctactc agctatcctt gcttcctccg acgagcaacc aagccgatgg cccctaggcc
     4261 gaccagcgtc agcgcatagt ctccggttcg ggcacagaaa cgctgatgcc tatgtactca
     4321 ttgttcagcg gatacgccgc gccgggccga tagtcaaacc cgttgtttcc ctttacaccg
     4381 acttcaagct gggcaaggaa gttcccggtg cccaggtttg tgggaaaccc tgtatccgcc
     4441 aacgcgagat cggtcccgcc gagctcgatg tc
//
LOCUS       DASVHM010000302         1635 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_744041, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000302 DASVHM010000000
VERSION     DASVHM010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_744041"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            416..1597
                     /gene="urtC"
                     /locus_tag="VF308_05750"
     CDS             416..1597
                     /gene="urtC"
                     /locus_tag="VF308_05750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtC"
                     /protein_id="HEX7436191.1"
                     /translation="MSAVLPAGPGARIEQSAAAESGAEVVPAPAVLPQKTSGFAARWS
                     AIVAAVIAIGVIVPVLNLVVPAGSSLHLSDYAVQLVAKIMCYAICALAMDLIWGYTGI
                     LSLGHGVFFALGGYAMGMYLMRQIGSDGQYRLPMPDFMVFLDWKALPWHWALSDSFLA
                     TLALVVLVPGLLAFVFGFFAFRSRIKGVYFSIITQAMTFATMLLFFRNETGFGGNNGF
                     TDFKRILGHPIATPAMRMTLFVITGLTLVAFFLVARFLVRSKFGRVLQAIRDAESRLM
                     FTGYNPLSYKLTIWVISAVMCGIAGALYVPQVGIINPGEMSPAASIEIAIWAAVGGRG
                     TLIGPIVGAFFVNGAKSWFTQAFPEFWLYVLGAMFIAVTLFLPQGIVGLLRRKTKGER
                     A"
BASE COUNT          223 a          561 c          554 g          297 t
ORIGIN      
        1 cgcttcactg cggcggtcgt ccctgcgggc cgactgccct gcgctgctcg ctccgcgggg
       61 cgacttcgac aactcggccc cgggtacggg gcctcaaaca cgtcgaagtc gtcgcggagt
      121 accgctccat ccccgctgcg ctgcgccgag gagcgcaggg gaccaggggt tgcgcatcgc
      181 cgcaaggcga tgcgtcgagc gcagcctgtc tgagcaccga gcagaggcgc gcgctgcaag
      241 cgcgtgccgc ccgtgcgagg gcgagttctg cgctcgcccc cgggccccga gcaccgcagg
      301 gcagtcggcg cgcagcgccg gccgccgcag tgaagtgcag ccggccaccc gcccacggct
      361 ttgcgcgctc gatctcgacg acgggcaccg cacgaaccgc aacgggacaa caaccatgag
      421 tgcggttctg cctgcgggac ccggcgcgcg gatcgagcaa tcggcggcgg ccgaatccgg
      481 cgccgaagtc gtgccggcgc cggccgtgct gccgcagaag acgtcgggtt tcgcggcgcg
      541 ctggagtgcg atcgtcgccg cggtgatcgc gatcggcgtg atcgtgcccg tgctcaacct
      601 cgtcgttccg gcggggagca gcttgcacct gagcgactac gcggtgcagc tcgtcgcgaa
      661 gatcatgtgc tacgccatct gtgcgctcgc gatggacctg atctggggct acaccggcat
      721 cctcagcctc ggccacggcg tcttcttcgc gctcggcggc tacgcgatgg gcatgtacct
      781 gatgcgccag atcggcagcg acggccagta ccgcttgccc atgcccgact tcatggtctt
      841 cctcgactgg aaggcattgc cgtggcactg ggcgctgagc gattcgttcc tcgccacgct
      901 cgcgctggtc gtgctcgtgc ccgggctgct tgccttcgtg ttcggctttt tcgccttccg
      961 ttcgcgcatc aagggcgtgt acttctcgat catcacgcag gcgatgacct tcgcgacgat
     1021 gctgctcttc ttccgcaacg agaccgggtt cggcggcaac aatggcttca ccgatttcaa
     1081 gcgcatcctc ggccatccga tcgcgacgcc ggcgatgcgg atgacgctct tcgtcatcac
     1141 cggattgacg ctggtcgctt tcttcctcgt cgcgcgcttc ctcgtccgct ccaagttcgg
     1201 gcgcgtgctg caggcgatcc gcgatgccga gagccgcctg atgttcaccg gctacaaccc
     1261 gctgtcgtac aagctgacga tctgggtcat ctcggcggtg atgtgcggga tcgccggggc
     1321 gctctacgtg ccgcaggtcg gcatcatcaa cccgggcgag atgtcgccgg cggcgagtat
     1381 cgagatcgcg atctgggccg cggtcggcgg ccgcggcacg ctgatcggtc cgatcgtcgg
     1441 cgcgttcttt gtcaacggcg cgaagagctg gttcacgcag gcctttccgg agttctggct
     1501 ctacgtgctg ggtgcgatgt tcatcgccgt cacgctcttc ctgccgcagg gcatcgtcgg
     1561 gttgctgcgg cgcaagacca agggtgagcg cgcatgacgc ccgagctgat gcaggctggc
     1621 gcccgggcgc gcgca
//
LOCUS       DASVHM010000303         1637 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_672093, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000303 DASVHM010000000
VERSION     DASVHM010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_672093"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            54..1607
                     /gene="ubiB"
                     /locus_tag="VF308_05755"
     CDS             54..1607
                     /gene="ubiB"
                     /locus_tag="VF308_05755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007867970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HEX7436192.1"
                     /translation="MRHIARLLFIYLTVFRYGLDELALSSFRQRSVRLLVRVMTIGRP
                     LEAPRGERLRQGLERLGPIFVKFGQVLSTRRDLLPPDLADELAKLQDRVPPFPAAQAR
                     RLVEGAFGRPIDAIFSSFDAEPVASASIAQVHFAVLKNGREVAVKVLRPGMLAAIDDD
                     LALMRTVASWVERVSADGKRLKPREVVAEFDMYLHDELDLVREAANAAQLRRNMQGLN
                     LVMVPEMVWELCTSSVIVMERMKGVPISQVQRLRDAGVDIPKLARDGVTIFFTQVFRD
                     GFFHADMHPGNIQVSIDPATFGRYVSLDFGIVGTLTEVDKDYLAQNFIAFFRRDYKRV
                     AELHVESGWVPASTRVDELEGAIRAVCEPHFDRPLKDISLGQVLLRLFQTSRRFNVEI
                     QPQLVLLQKTLLNVEGLGRDLDPGLDLWSTAKPFLERWMKEQVGWQGLVERLKNEAPR
                     FVHLLPELPRLLHHALQPSAAQVQQQRLFEALLLEQRRTNRWVQAVGYVGIGFLLGLL
                     AMQAFIHLQ"
BASE COUNT          238 a          559 c          556 g          284 t
ORIGIN      
        1 aagggtgcgg catcgccgcc cgccgcgccc gggggcgggg ggccgccgcc ccgatgaggc
       61 atatcgcccg gctcctgttc atctacctca cggtatttcg ctacgggctg gacgagctcg
      121 cgctgtcgag ttttcggcag cgttcggtgc gcctgctcgt gcgtgtgatg acgatcgggc
      181 gccccctcga ggcgccgcgc ggcgagcgcc tgcgccaggg gctcgaacgg ctcggtccga
      241 tcttcgtgaa gttcggccag gtgctctcga cccggcgtga cctgctgccg cccgatctcg
      301 ccgatgagct cgcgaagttg caggaccgcg tgccgccgtt tcccgcggcg caggcacggc
      361 gcctggtcga gggcgccttc ggacggccga tcgacgcgat cttctcgagc ttcgacgccg
      421 agccggtcgc gagcgcctcg atcgcgcagg tgcatttcgc ggtgctcaag aatggccgcg
      481 aggtcgccgt caaggtgctg cgccccggca tgctggccgc gatcgacgac gacctcgcac
      541 tgatgcgcac cgtcgcgagc tgggtcgagc gcgtctcggc cgacggcaag cgcctgaagc
      601 cgcgcgaggt cgtggccgag ttcgacatgt acctgcacga cgagctcgat ctcgtgcgcg
      661 aagccgcgaa tgcggcccag ctgcgccgca acatgcaggg gctgaacctc gtcatggtgc
      721 cggagatggt ctgggagctg tgcacctcca gcgtcatcgt gatggagcgg atgaagggcg
      781 tgccgatcag ccaggtgcag cggctgcgcg acgccggcgt cgacattccg aagctggcgc
      841 gcgacggcgt cacgatcttc ttcacccagg tgtttcgcga cggcttcttc catgcggaca
      901 tgcacccggg caacatccag gtgtcgatcg atccggcgac cttcggccgc tacgtctcgc
      961 tcgatttcgg catcgtcggc acgctgaccg aggtcgacaa ggattacctg gcgcagaatt
     1021 tcatcgcctt cttccggcgc gactacaagc gggtcgccga actgcacgtg gaaagcggct
     1081 gggtgccggc ctcgacccgg gtcgacgagc tcgaaggcgc gatccgcgcg gtctgcgaac
     1141 cgcatttcga tcggccgctc aaggacatct cgctcggcca ggtgctgctg cgcctgttcc
     1201 agacctcgcg ccgcttcaac gtcgagatcc agccccagct cgtgctgctg caaaagacgc
     1261 tgctcaacgt cgagggactc ggccgcgacc tcgatcccgg actcgacctg tggagcacgg
     1321 ccaagccgtt cctcgagcgc tggatgaagg agcaggtcgg ctggcagggc ctcgtggaac
     1381 gcctcaagaa cgaggccccg cgcttcgtgc acctgctgcc ggagctgccg cgcctgttgc
     1441 accatgcctt gcagccttcg gccgcgcagg tgcagcagca gcgcctattc gaagcgctgc
     1501 tgctcgagca gcgccggacc aaccgttggg tccaggccgt cggctacgtc ggcatcggct
     1561 ttctgttggg actgctggcg atgcaggcgt tcatccacct gcagtaggcc cttcagcgtc
     1621 gccggcgggc gcgcttt
//
LOCUS       DASVHM010000304         2308 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_239153, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000304 DASVHM010000000
VERSION     DASVHM010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239153"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..227)
                     /locus_tag="VF308_05760"
     CDS             complement(<1..227)
                     /locus_tag="VF308_05760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018025404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1850 domain-containing protein"
                     /protein_id="HEX7436193.1"
                     /translation="MPVCIAAGGVVVALATQAFTLAWTHSIEKVRWEEDYRVEGTALR
                     LVEARVHGHGAGMEPPPGSRLEGDVWHYTPAL"
     gene            complement(227..2251)
                     /locus_tag="VF308_05765"
     CDS             complement(227..2251)
                     /locus_tag="VF308_05765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019140300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter permease"
                     /protein_id="HEX7436194.1"
                     /translation="MQRKLTGPTLVFLSGAALAFSTYQLVVAAFQPFSSLVMRSLHVG
                     FLLLLVFVLYPALRRGTQLIRVPLVDWALAFAGFGLAFYQWIFEADLIQRAGDPTTLD
                     LVVGTVTTVLVFEAARRVLGVALPLVCAAFLLYGLFGQHLPDVIAHRPFAYSQIVDQL
                     GFGTEGIYGIPTLVSSTYIFLFILFGAFLEHAGMIRLFNDLALGLVGSSQGGPAKVAV
                     ISSGLMGTISGSGVANVLTVGQFTIPLMKRFGYSAVFAGAVEATSSMGGQIMPPVMGA
                     VAFIMAETLNVPYADIVKAAVIPAFLYYFAAFTMVHLEAGRRGLAGLPKDQCPNPWRA
                     LKANWYLVLPLAALVYMLFHGFTPMFAGMVGLALTAIMILGVTIAARLSATAFRYAFW
                     VAVGLGASAFLKWGIQPVLLLIGLLVVVCAVIRNGPATLGLLKDSLISGAKQALGVGI
                     ACAVVGVIIGILTLTGAASSFAGFILDVGQKSLFLSLLLTMVVCLILGMGIPTIPNYI
                     ITSSIAAPALLKLGVPLIVSHMFVFYFGIMADLTPPVALAAFAAASISKASPMKTGIK
                     ATQIAIAGFVVPFMAVYAPELMLQGDAGWIAVVYVSFKAVVAICLWGAAAVGYLRAPL
                     SSLERVLAAIAACLLVAAIPWTDEAGFALGFACVAVNVWRGRRLVKAVSV"
BASE COUNT          479 a          761 c          780 g          288 t
ORIGIN      
        1 agggccggcg tgtagtgcca gacgtcgcct tcgagccgac ttccgggtgg aggctccatg
       61 ccggcaccgt ggccatggac gcgcgcttcg acgaggcgca gggccgtgcc ctcgacccga
      121 tagtcttcct cccagcgcac cttctcgatc gaatgcgtcc aggccagggt gaatgcctgc
      181 gtcgccagcg ccacgacgac tccgcccgcc gcgatgcaga ccggcatcag acgctgactg
      241 ccttgacgag ccggcgcccg cgccagacgt tgacggcgac gcacgcgaag ccgagcgcga
      301 atccggcctc gtcggtccag gggatcgccg ccaccagcag gcatgcggcg atcgccgcca
      361 gtacgcgttc gagcgacgaa agcggcgccc gcaggtagcc gacggcggca gcgccccaga
      421 ggcagatcgc gaccacggcc ttgaacgaca cgtacaccac cgcgatccag cccgcatcgc
      481 cctgcagcat cagctccggc gcgtaaaccg ccatgaacgg cacgacgaac ccggcgatgg
      541 cgatctgcgt cgccttgatg ccggtcttca tcggcgaggc cttcgaaatc gacgccgcgg
      601 cgaacgcggc cagcgccacc ggaggcgtga ggtcggccat gatgccgaaa tagaacacga
      661 acatgtggct gacgatcagc ggcacgccga gcttgagcag cgccggcgcg gcaatggaac
      721 tggtgatgat gtagttcgga atcgtcggga tgcccatgcc gaggatcagg caaacgacca
      781 tcgtcagcag cagtgacagg aacaggctct tctggccgac gtcgagaatg aagccagcaa
      841 agctcgatgc cgcgccggtc agggtaagga tgccgatgat tacgccgacc acggcacagg
      901 cgatgccgac gccgagggcc tgcttcgcgc cgctgatcag gctatccttc aacaggccga
      961 gcgtggcggg gccgttgcgg atcaccgcgc agacgaccac cagcaacccg atcagcagca
     1021 gcaccggctg gatgccccat ttcaagaatg cggatgcgcc gaggcccacc gcgacccaga
     1081 aggcgtaacg gaatgcggtc gcggacaggc gcgccgcgat cgtgacgccc aggatcatga
     1141 tcgcagtcag cgccaacccg accatgccgg cgaacatcgg cgtgaagccg tggaacagca
     1201 tgtagacgag cgccgcgagc ggcaagacga gataccagtt cgccttcaac gcacgccacg
     1261 gattcgggca ctggtccttc ggcaaaccgg caaggccacg ccgcccggcc tcgaggtgca
     1321 ccatcgtgaa ggcggcgaag tagtagagga acgccgggat cacggcggcc ttgacgatgt
     1381 cggcgtacgg cacgttgagt gtttcggcca tgatgaaggc gacggcgccc atcaccggcg
     1441 gcatgatctg gccgcccatg ctcgacgtgg cttccaccgc gccggcgaag accgcgctgt
     1501 agccgaagcg cttcatcagc ggaatcgtga actgcccgac tgtgagcaca ttggccacgc
     1561 ccgacccgga gatcgttccc atcaggcccg acgagatcac ggcgaccttc gccggcccgc
     1621 cctgcgaaga accgaccagg ccgagcgcga ggtcgttgaa gagacggatc atcccggcat
     1681 gctcgaggaa agcgccgaac aggatgaaga gaaagatgta ggtcgacgac accagcgtcg
     1741 ggatgccgta gatgccttcg gtgccgaagc cgagctggtc gacgatctgc gaataggcga
     1801 agggccggtg cgcgatcaca tccggcaggt gctggccgaa gaggccgtac agcaggaacg
     1861 cagcgcagac cagcggcagc gcgacgccga ggacgcgccg ggccgcttcg aagacgagca
     1921 cggtcgtcac ggtcccgacg acgagatcga gcgtcgtcgg gtcgccggcg cgctggatca
     1981 gatcggcttc gaaaatccat tggtagaacg caaggccgaa tcccgcgaag gcgagcgccc
     2041 aatcgacgag cggcacacgg atcagctgcg tgccgcgccg cagggctggg tagagcacga
     2101 agaccaggag cagcaagaag cccacatgca gcgagcgcat gacgaggctc gagaacggct
     2161 ggaacgcagc gaccaccaat tggtaggtcg agaacgccag cgcggcgcca ctcagaaaga
     2221 cgagcgtcgg gccggtgagc ttgcgctgca ggccgtgctc gaggaactcg gcgccgccgg
     2281 caccgggcgc atcggccgcg cccgtcgg
//
LOCUS       DASVHM010000305         1846 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_94829, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000305 DASVHM010000000
VERSION     DASVHM010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94829"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..1239
                     /gene="moaA"
                     /locus_tag="VF308_05770"
     CDS             112..1239
                     /gene="moaA"
                     /locus_tag="VF308_05770"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007848060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEX7436195.1"
                     /translation="MAEKVIPLADHRYAASRPRVPVQASAPSGHLADALGRPLRDLRI
                     SVTDRCNFRCGYCMPKEVFDKNYNFLPHASLLSFEEITRVARVFAAHGVRKIRLTGGE
                     PLLRKNLEILVGMLSELRTPDGLPLDLTLTTNGSLLARKATALRQAGLKRVTVSLDAL
                     DDAIFRRMNDADFPVAAVLEGIEAAERAGLGPIKVNMVVKRGTNDDQILPMARHFKGS
                     PVVLRFIEYMDVGATNGWRMDEVLPSAEVVRRIAAEYPLVQLAATSAGETAQRWRYID
                     SGPEAAGEIGVISSVTQAFCHDCNRARLSTEGKLFLCLFASHGHDLRALLRGDFSDAQ
                     IAAALGLIWTARDDRYSELRGSLTQAPADASRRVEMHYIGG"
     gene            1247..1846
                     /gene="mobA"
                     /locus_tag="VF308_05775"
     CDS             1247..1846
                     /gene="mobA"
                     /locus_tag="VF308_05775"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010930371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HEX7436196.1"
                     /translation="MIAADDITGLILAGGRGARMGGVDKGLQSHLGTPLALHALLRLA
                     PQVGQLMINANRNLGAYESMGVPVWPDSIPDYAGPLAGFLTGLERCETPYLVTVPCDS
                     PLFPEDLVERLARSLEAEQAEIAYAATREGDAVQAHPVFCMMKASLMESLVRFTQSGQ
                     RKIDRWTALHRCAEVLFDDASAFVNANTAAELQQLQAHG"
BASE COUNT          297 a          654 c          609 g          286 t
ORIGIN      
        1 cgcagcagcg cctgcgacca ccgacacggt cgtctccgac atttcgatgc gctgaaggtt
       61 cgcccgccgg cgcgccgcgc gagcgaccgg gtgcgaaggc acaatcgcgc catggccgaa
      121 aaagtcattc ccttggcgga ccaccgctac gcggcctcgc ggccgcgcgt tccagtgcag
      181 gccagcgccc cgagcgggca cctggccgac gcgctcggca gaccgctgcg cgacctgcgc
      241 atctcggtca ccgaccgctg caacttccgc tgcggctact gcatgccgaa ggaagtgttc
      301 gacaagaact acaacttcct gccgcacgcc tcgctgctca gtttcgaaga gatcacccgg
      361 gtcgcccgcg ttttcgcggc gcacggcgtg cgcaagatcc gcctgaccgg cggcgagccg
      421 ctgctacgca agaacctcga gatcctcgtc ggcatgctca gcgaactgcg cacccccgac
      481 ggactgccgc tcgacctgac cctgacgacg aacgggtcgt tgctcgcccg caaggcgacc
      541 gcgctgaggc aagccggcct gaagcgcgtg acggtgagcc tcgacgcgct cgacgacgcg
      601 atcttccggc gcatgaacga cgccgatttt ccggttgcgg cggtgctcga agggatcgaa
      661 gcggcggagc gcgccggcct cggcccgatc aaggtcaaca tggtcgtcaa gcgcggcacc
      721 aacgacgacc agatcctgcc gatggcgcgc cacttcaagg ggtcgccagt ggtcctgcgt
      781 ttcatcgagt acatggacgt cggcgccacc aatggctggc gcatggacga ggtgttgcct
      841 tcggcggagg tggtgcgccg catcgccgcc gaatacccgc tcgtgcagct cgccgcgaca
      901 agcgccggcg agacggcgca gcgctggcgc tacatcgaca gcggcccgga agcggccggc
      961 gagatcggcg tgatctcgag cgtcacgcag gccttctgcc acgactgcaa ccgtgcccgt
     1021 ctgtcgaccg agggcaagct cttcctgtgc ctgttcgcga gccacggcca cgacttgcgc
     1081 gcgctgctgc gcggcgactt cagcgacgcc cagatcgccg cggcgctcgg cttgatctgg
     1141 actgcccgcg acgaccgcta ttccgagctg cgcgggtcgt tgacgcaggc gccggccgat
     1201 gcgagccggc gcgtcgagat gcactacatc ggcggatgaa ggcgccatga tcgccgccga
     1261 cgacattacc ggcctgatcc tcgccggagg gcgcggcgcc cgcatgggtg gcgtcgacaa
     1321 gggcctgcag agccatctgg gcactccgct cgcgctgcat gcgctgctgc gcctcgcgcc
     1381 gcaggtcggg cagttgatga tcaacgccaa ccgcaacctc ggcgcctacg agtccatggg
     1441 tgtgccggtg tggcccgatt cgattcccga ctacgccggg ccgctcgccg ggtttctcac
     1501 gggcctggaa cgctgcgaaa cgccttacct cgtcaccgtg ccctgcgatt cgccgctgtt
     1561 tcctgaagac ctggtcgaac gcctggcccg gtccctcgag gccgagcagg cggagatcgc
     1621 ctacgccgcg acgcgcgaag gcgatgcggt ccaggcccat ccggtgttct gcatgatgaa
     1681 ggcctccttg atggaaagcc tggtgcgctt cacgcagagc ggccagcgca agatcgatcg
     1741 ctggaccgcc ctgcaccgct gcgccgaggt gcttttcgac gacgcttcgg ccttcgtcaa
     1801 tgcgaacacg gcggcggaac tgcagcagct ccaggcgcat ggttga
//
LOCUS       DASVHM010000306         8722 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_672472, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000306 DASVHM010000000
VERSION     DASVHM010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 8722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8722
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_672472"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..5475
                     /locus_tag="VF308_05780"
     CDS             22..5475
                     /locus_tag="VF308_05780"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEX7436197.1"
                     /translation="MAAAPDDIVRVEFENGLALWMRADDLLRERGQRAVGRDTAGAVW
                     TIDPAPRPGLTQRDDARSARGAERGALGLGIKVLEFFGVDLKKKSAALLGRTFEERQL
                     KGQAPGLYRCSLEPGGALAPAPASGALPVDRPMLVFLHGTMSSAMGSFGDLWSSATDD
                     NGQAAEAARKSIGARYGEDVYAFEHRSLTESPIQNALDLVGRLPVGAQLHLVSHSRGG
                     LVGELLCLAERDRKDDPLQAGTLDALFAADRTVAEQLGLGPLDGPAAAARDKAYADDR
                     GRLAQLVKLLDARKIRVHRFVRVACPARGTTLTSGRLDRWLSVVNLLTANSLVADAAD
                     FLLAVVKERTDPRTLPGLEAMMPGSALTRLLQHPSLVTSADLSVIAGDVEGQGLWGQL
                     KLLAVDWFYGSDHDLVVNTGSMFGGIRRPDGGARFLRDQGERVIHFNYFANAKSIGWL
                     VNGLAREDGSDGGFAPMGQAKQEEPRWRSAVRQSRAATTPRPLALVVPGTMGSALSVR
                     GKSVWLSYWSLVRGGLADIGWGTADVQVGDILDDFYGPLLEHLARTHRVEFFAYDWRE
                     SVIDAAKRMAARLETLLPEAERTSQPVHIVAHSMGGLVSRAMIADGGAGAQVWRRITA
                     LAGSRLLMLGTPNRGSHEAVRWLTASNPTEAKLTLLDLTHDVNGIVDIVRRFPGMVEL
                     LPFDDPARFAQAALWKQLRADIGAGWPIADDAVLRGATATWALLKGAAPDPRFMVYVA
                     GCQRATVTDYQVVEDETRSPRKRLDFIATPEGDGTVTWASGRLADVAMYYAPDTAHDE
                     LCSNADDRRIFRGYVELLTTGKTDQLPASPPDVARSATGEPVRFVLPPLPVTDDLPDE
                     DAVRALSFSGGRPAKRGGAAPVSSVIEVSLRHGDLAYARHAVLAGHYLGDTIVSAELA
                     LDQRLHGALTRRRDLGLYPGASGSYAVFFNEEADGKPVGALVVGLGQVGELSPGQLES
                     GVRDALLDYALQVIHRPDLRPPENPQPQGGPRRARASCLLVGTGAGALRLRDSIEAML
                     RGALAANRKLEAAELDQKVLIDRIEILEVYEDVALSAARELGDVLDSAVLGPSLRWSR
                     RCIEEGEGRRRRRRFGSDGSWWQRLEIVLDAHGDRLRFIATTDKARAEESLAAGQLRL
                     ADSFIAQACGSAVSNADIAKTLFEMLLPNRLKESSPDQRDLVLLLDEDSARFPWEMLE
                     DRWSHTGRPPAVAGGLLRQLKTTEFRIPAAHAYENTVFVVGNPNLDGWDTFADLPGAR
                     REAELVGRVFNERGYATLASIDERAEAILGGLHSKAWRVLHLAGHGAHEFALKDDPPA
                     PPGADSGAAAAAPRLVSGMVIGRDTFLTPGDVEQMRYVPELVFVNCCYLGKTLSTDPA
                     RYNHLAANLGVQFIRMGVKAVIAAGWAVDDGAALTFAETFYRRMLAGDAFGDAVQTAR
                     EAAWAGHPGANTWGAYQCYGDPGYRLQRDPQSDFVTVQPAYFAPGELVTDLRNLAEAT
                     RMTSKEHNDDDAIVKRLRAQIEASLQRIPDSERANGRDGWLDRADVCAALGFAYGEGR
                     QFGDAVIWLDKSLGAAVGDCPIRAVEQHANFQVRLAVEQWTALRSGDGARRASAARLR
                     ELHERQRAIADRIEVSIRELDAINRRATTPDRLELLGGACRRLAWVQTESAPRVAALL
                     KMAEYYRSAYDAGGQSDSYAFNNWAVACLLLASIDPAYEAGDWRAVLADMCDRQTQQT
                     LALNEDDPSLWRSTGLADIEVVRLLLAATDAAKCSAHAERATELYRVAFERGASLREI
                     ASIQEYLDFLQDLTSDWPAQVAASLAGVRRALD"
     gene            complement(5512..6315)
                     /locus_tag="VF308_05785"
     CDS             complement(5512..6315)
                     /locus_tag="VF308_05785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX7436198.1"
                     /translation="MKLLRLLASALLAGCAVMAPAPAVDADLTRTFEHGQVHFRQDGS
                     VLSRRIDDAMPLLRRLDRSAFRGTVVYLHGCDGINSLGIKTADLLAAAGYIVFVPDSF
                     ARRDKPASCDPQQFQGGLHREVLGWRQAEADHALKQAGMLPAVDPSRIFLMGLSEGAI
                     ATATYDGQPLAGRIIEGWTCHAGWPEYRGLHAPANEPVLALSSENDPWFQDPVLRGDC
                     GDFIAAPSPLRRSIVFRPPHPAASQHDLMWNAEARRLVLEFLDAAGPRR"
     gene            complement(6312..7166)
                     /locus_tag="VF308_05790"
     CDS             complement(6312..7166)
                     /locus_tag="VF308_05790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018904367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEX7436199.1"
                     /translation="MNDFAIAGLQLALASDDNRDRIEHEVGIAMARFPWLRMVVLPEL
                     ASFGPALARAEPLPGPTEQRYQALARKHGIWLVPGSIYEKQGDRIYNTASAIDPVGKV
                     VARYRKIYPFLPYETGVAHGTEVSVFDVPDVGRFGISICYDQWFPEVARALAWKGAEV
                     ILHPTLTGTIDRAQELVLAQANAITNQCYFIDINHAGALGNGRSILVGPEGDVLHRAG
                     ERDEIMPLTLDLDRVRHTRSNGLKGLGQMLKSFRDTPVRFPCYNDAQGDSPSLRALGP
                     LALPRRLR"
     gene            complement(7174..7935)
                     /locus_tag="VF308_05795"
     CDS             complement(7174..7935)
                     /locus_tag="VF308_05795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015866036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7436200.1"
                     /translation="MTEPAPTIELRAVGVTYRKGGFWKPTAVSAVRHVDLAIAPGETL
                     GLVGESGSGKTTLGRVALGLIAPTYGTFRFEGRAFDARVRREGALAIVFQHPEWALNP
                     RLKSGVSIAEPLVIQGLDRAERSRRVTEMLDEVGLDAAFARRYPGELSGGQRQRMAIA
                     RALITRPRFVVFDEAVSALDVSVQSQILNLIRRLQRQYRFAALFISHDLAATRYVSHR
                     IAVMLRGEFVEVAAAAKFYELPDHAYSRTLYASIA"
     gene            complement(7932..>8722)
                     /locus_tag="VF308_05800"
     CDS             complement(7932..>8722)
                     /locus_tag="VF308_05800"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436201.1"
                     /translation="CGDIHVEGRSVLSCSVAELRTIRRDRLGFVYQNPMSALDPTMRV
                     GRQVALAIGSDPARATIDALLGRVGLEDPASVAGSFPHELSGGMAQRVVIALAIARNP
                     GVLIADEPTASLDASIQGVILDLLTSLRATTGASLVIMSHDLRMVARRCERILVMYGG
                     RVIESGPSQRVFEDPLHPYTRALIKAAAGNEGPGGELEPIPGVPPVLRRASTDCAFAP
                     RCEFAQPRCVAERPAAHAIDERFVACHFAAGGLTRSRPTPVAGP"
BASE COUNT         1294 a         3012 c         3120 g         1296 t
ORIGIN      
        1 gccggcgcgc cgacccttcc ggtggcggcg gcgcccgacg acatcgttcg cgtcgagttc
       61 gagaacggcc tggcgctgtg gatgcgcgcc gacgatctgc tgcgcgagcg cgggcagcgg
      121 gcggtggggc gcgatacggc cggcgccgtc tggaccatcg atcccgcgcc gcgtcccggc
      181 ctcacgcagc gcgacgatgc gcgctcggcg cgcggcgccg agcggggcgc gctcgggctc
      241 ggcatcaagg tgctcgagtt ctttggcgtc gacctgaaga agaagtcggc ggcgctgctc
      301 ggcaggacct tcgaagagcg gcaattgaaa ggccaggcgc cgggccttta tcgttgctcg
      361 ctcgagcccg gcggcgcgct ggcgcccgcg cccgcgtccg gcgccctgcc ggtcgacagg
      421 ccgatgctgg tctttctgca cggcacgatg tcgagcgcga tgggcagctt cggcgacctg
      481 tggtcgagcg cgaccgacga caacggtcag gccgcggagg cggcgcgcaa gtcgatcggc
      541 gcccgttatg gcgaggacgt gtacgcgttc gaacaccgct cgctcaccga aagcccgatc
      601 cagaacgcgc tcgatctcgt cgggcggttg ccggtcggcg cgcagttgca cctcgtgtcg
      661 cattcgcgcg gtggcctcgt cggtgaactg ctctgcctgg ctgagcgcga ccgcaaggac
      721 gatccgcttc aggccggcac cctcgacgcg ctcttcgccg ctgaccgcac cgtcgccgaa
      781 cagctgggcc tgggtccgct cgacggcccc gccgcggcgg cgcgcgacaa ggcctatgcc
      841 gacgaccgcg ggcgtctcgc ccaacttgtg aagctgctcg atgcgcgcaa gatccgggtg
      901 catcgattcg tgcgtgtcgc ctgcccggcg cgtggcacca cgctgacctc ggggcgtctc
      961 gaccggtggc tgagcgtcgt caatctcctc accgccaaca gcctcgtcgc cgacgctgcc
     1021 gatttccttc tcgcggtggt gaaggagcgc accgatccgc gcacgctgcc gggcctcgag
     1081 gcgatgatgc cgggctcggc gctgacccgg ctgctgcagc atccgtcgct tgtgacgagt
     1141 gccgatctca gcgtgatcgc gggcgacgtg gaaggccagg gcttgtgggg ccagctgaag
     1201 ctgctcgcgg tcgactggtt ctacggcagc gatcacgatc tcgtcgtcaa caccgggtcg
     1261 atgtttggcg gcatccgccg ccccgacggc ggcgcgcgct tcctgcgtga ccagggcgag
     1321 cgcgtcatcc acttcaacta tttcgcgaac gcgaagtcga tcggctggct cgtcaacggt
     1381 ctggcgcgcg aagacggcag cgacggcggc ttcgcgccga tggggcaggc caagcaggag
     1441 gagccgcgct ggcgttcggc cgtgcgccaa agccgcgccg cgaccacgcc gcggccgctc
     1501 gcgctggtcg tgcccggtac catgggcagc gcgctgtcgg tgcgcggcaa gtcggtgtgg
     1561 ctctcgtact ggtcgctggt gcgcggcggc ctcgccgaca tcggctgggg cactgccgac
     1621 gtccaggtcg gcgacatcct ggacgacttc tacggcccgc tcctcgaaca cctcgcgcgc
     1681 acccaccgcg tcgagttttt cgcgtacgac tggcgcgagt cggtgatcga cgccgccaag
     1741 cgcatggccg cgcgcctcga gacgctgctg cccgaagccg agcgcacgag ccagcccgtg
     1801 cacatcgtcg cccattcgat gggcgggctc gtgtcgcggg cgatgatcgc cgacggcggc
     1861 gccggcgccc aggtctggcg ccggatcacc gcgctggccg gaagccgcct gctgatgctc
     1921 ggcacgccca atcgcggctc gcatgaagcg gtgcgctggc tcaccgcttc gaacccgacc
     1981 gaggccaagc tgacgctgct cgatctcact cacgatgtga acggcatcgt cgacatcgtg
     2041 cgccggttcc ccggcatggt cgagctgctg ccgttcgacg atccggcccg cttcgcccaa
     2101 gccgcgctct ggaagcagtt gcgcgccgac atcggcgccg gctggccgat cgccgacgat
     2161 gccgtgctgc gcggggcgac cgcgacctgg gcgctgctga aaggcgcggc gcccgacccc
     2221 aggttcatgg tctacgtggc cggctgtcaa cgcgcgaccg tgaccgacta ccaggtggtc
     2281 gaggacgaaa ccaggagccc gcgcaagcgc ctcgatttca tcgccacgcc cgaaggcgac
     2341 ggcacggtga catgggcctc cgggcggctg gccgacgtcg cgatgtacta cgcacccgac
     2401 acggcacacg acgagctctg cagcaacgcc gacgaccggc gcatcttccg cggctacgtc
     2461 gagttgctga cgacgggcaa gaccgaccag ttgccggcct cgccgcccga cgtcgcgcgt
     2521 tcggcgaccg gcgagccggt gcgcttcgtc ctgccgccgc tgccggtcac cgacgatttg
     2581 cccgatgaag acgcggttcg tgccctcagc ttcagcggcg ggcggccggc caagcgcggc
     2641 ggcgccgcgc cggtctcctc ggtcatcgag gtgagcctgc gccatggcga cctcgcctat
     2701 gcgcgccacg cggtcctcgc cggtcactat ctcggcgaca ccatcgtcag cgccgagctg
     2761 gcgctcgatc agcgcctgca tggcgcgctg acgcggcgcc gcgacctcgg cctctacccg
     2821 ggggcgagcg gctcctacgc ggtgtttttc aatgaagagg ccgacggcaa gccggtcggg
     2881 gcgctcgtcg tcggactcgg ccaggtcggc gagctgtcgc cggggcagct cgagagcggc
     2941 gtgcgcgacg cgctgctcga ctatgcgctg caggtgattc acaggcccga cttgcggcct
     3001 cccgagaatc cgcagccgca gggcggcccg cggcgcgcgc gggcgagctg cctgctcgtg
     3061 ggcaccggcg cgggcgcgct gcgcctgcgc gattcgatcg aagcgatgct gcgcggcgcg
     3121 ctcgccgcca accgcaagct cgaagcggcc gagctcgacc agaaggtgct gatcgaccgc
     3181 atcgagattc tcgaggtcta cgaagacgtg gcgctgagcg cggcgcgcga gctcggtgac
     3241 gtgctcgaca gcgcggtgct cggcccttcg ctgcgctgga gccggcgctg catcgaggaa
     3301 ggcgaaggcc gacgccggcg gcgccgcttc ggcagcgacg gctcgtggtg gcagcgcctc
     3361 gagatcgttc tcgatgcgca cggcgatcgg ctgcgcttca tcgcgacgac cgacaaggcg
     3421 cgcgccgagg agtcgctcgc cgccggccag ctgcgcctcg ccgattcctt catcgcacag
     3481 gcctgcggca gcgccgtcag caatgccgac attgccaaga cgctgttcga gatgctgctg
     3541 cccaatcggc tcaaggaaag ctcacccgac cagcgcgacc tagtcctcct cctcgacgag
     3601 gattcggccc gctttccgtg ggagatgctc gaggatcgct ggagccatac cggccgcccg
     3661 cccgcggttg ccggcggcct gctgcgccag ttgaagacga ccgagttccg gattcccgcg
     3721 gcgcacgcct acgagaacac cgtcttcgtc gtcggcaatc cgaatctcga cgggtgggac
     3781 acctttgccg acctgcccgg ggcacggcgc gaagccgagc tggtcgggcg cgtcttcaac
     3841 gagcgcggct atgcgacgct cgcctcgatc gacgaacgcg ccgaagccat tctgggcggg
     3901 ctgcactcga aggcctggcg cgtgctccat cttgccgggc acggcgcgca cgagttcgcc
     3961 ttgaaggacg atcccccggc gccgcccggc gctgacagcg gcgccgccgc cgcggctcca
     4021 cgcctggtct cgggcatggt gatcggccgc gacaccttcc tcacgccggg cgacgtcgag
     4081 cagatgcgct acgtgccgga actggtgttc gtcaactgct gctatctggg caagaccctg
     4141 agcaccgacc cggcgcgcta caaccatctg gccgcgaacc tcggggtgca attcatccgc
     4201 atgggcgtga aggcggtgat cgcggcgggc tgggccgtcg acgacggcgc ggcgctgact
     4261 tttgcagaga ctttctatcg gcgcatgctc gccggcgatg ccttcggcga cgccgtccag
     4321 accgcgcgcg aggccgcctg ggccggtcat cccggcgcca acacctgggg cgcctaccag
     4381 tgctatggcg atccgggcta ccgattgcag cgcgacccgc agagcgattt cgtgacggtt
     4441 caacccgctt acttcgcccc cggcgagctc gtcaccgatc tgcgcaacct ggccgaagcg
     4501 acgcgcatga cttcgaagga gcacaacgac gacgacgcca tcgtgaagcg gctgcgggcg
     4561 cagatcgaag cctcgctgca gcgcattccg gactccgagc gcgcgaacgg ccgcgacggc
     4621 tggctcgacc gcgccgatgt ctgcgcagcg ctcggcttcg cgtacggcga gggacgccag
     4681 ttcggcgatg cggtgatctg gctcgacaag tctctgggcg ccgcggtcgg tgactgcccg
     4741 attcgcgccg tcgagcagca cgcgaacttc caggtgcgat tggccgtgga gcaatggacg
     4801 gcactgcgct cgggcgacgg ggcgcggcgc gcgagcgcgg cgcggctgcg cgaactgcac
     4861 gagcgtcaac gggcgatcgc cgatcggatc gaggtctcga ttcgcgaact cgatgcgatc
     4921 aaccggcgcg cgaccacgcc cgatcgcctc gagctcctcg gcggggcctg caggcgcctg
     4981 gcctgggtcc agaccgagag cgcgccgcgc gtcgcagccc tgctcaagat ggcagagtac
     5041 taccgcagcg cctacgacgc cggcgggcaa agcgacagct acgcgttcaa caactgggcc
     5101 gtcgcctgcc tgctgctggc gagcatcgat ccggcctacg aggcgggcga ttggcgtgct
     5161 gtgctcgccg acatgtgcga ccgccagacc cagcaaacac tggccctcaa cgaagacgat
     5221 ccgagcctgt ggcgcagcac cgggctcgcg gacatcgagg tcgtgcgcct cttgctagcg
     5281 gcgacggatg cggcgaagtg cagcgcgcat gcggagcgcg cgaccgagtt gtaccgggtc
     5341 gccttcgagc ggggcgcgag cctgcgcgag atcgcctcga tccaggagta cctcgacttc
     5401 ctgcaggacc tgacttcgga ctggcctgcg caagtggcgg cgtccctcgc cggggtccgg
     5461 cgcgcgctcg actgacggct cggcgaccgc tcgggtcagg ctcggcgaac gtcagcgccg
     5521 gggtccggcc gcgtccagga attccagcac cagtcggcgt gcctcggcgt tccacatcag
     5581 gtcgtgctgc gaagccgccg ggtgcggcgg gcggaacacg atcgagcgcc gcagcggcga
     5641 cggcgcggcg atgaagtcgc cgcagtcgcc gcgcaggacc gggtcctgaa accagggatc
     5701 gttttccgag ctcagggcca gcaccggctc gttcgccggc gcgtgcagtc cgcggtattc
     5761 cggccagccg gcgtggcagg tccagccttc gatgatgcgc ccggccagcg gctggccgtc
     5821 gtaggtcgcc gtcgcgatcg cgccctcgct caaacccatc agaaagatgc gggacgggtc
     5881 gactgccggc agcatcccgg cctgcttgag cgcgtggtcg gcttcggcct ggcgccagcc
     5941 gaggacctcg cggtgcaggc cgccctggaa ctgctgcggg tcgcagctcg cgggcttgtc
     6001 ccggcgcgcg aaactgtcgg gaacgaagac gatgtaaccg gcggccgcga gcaggtcggc
     6061 tgtcttgatg ccgagcgaat tgatgccgtc gcagccatgc aggtacacga cggtgccgcg
     6121 aaacgccgat cggtcgagac gacgcaagag gggcattgcg tcgtcgatgc gacgcgacag
     6181 caccgatccg tcctggcgga aatggacctg cccatgctcg aacgtgcggg tcagatcggc
     6241 atcgaccgca ggcgcgggcg ccattacggc gcagccggcg agcagggccg atgcgaggag
     6301 gcgcaggagc ttcatcgcag ccgccgcggc agggccagcg gacccagcgc acgcaggctc
     6361 ggcgagtctc cttgcgcgtc gttgtagcag ggaaagcgca cgggcgtatc gcgaaacgac
     6421 ttgagcatct gcccgaggcc cttcaggccg ttggagcgcg tgtggcgcac gcggtcgagg
     6481 tcgagcgtca gcggcatgat ttcgtcccgt tcgccggcgc gatgcaagac gtcgccctcg
     6541 gggccgacca gaatcgagcg gccgttgccc aatgcgccgg catgattgat gtcgatgaaa
     6601 tagcactggt tcgtgatcgc gttggcctgc gccaggacga gttcctgggc gcggtcgatg
     6661 gtgccggtca gggtcgggtg gaggatcact tcggcaccct tccacgcgag cgcccgcgcc
     6721 acttccggaa accattggtc gtagcagatc gagatgccga agcggccgac atcgggcacg
     6781 tcgaagacgc tgacctcggt gccgtgcgcg acgcccgtct cgtacggcag gaacgggtag
     6841 atcttgcggt agcgcgccac gaccttgccg acggggtcga tcgccgaggc ggtgttgtag
     6901 atccgatcac cctgcttctc gtagatcgag cccggcacga gccagatacc gtgcttgcgg
     6961 gccagggcct ggtagcgctg ttcggtcgga cccggcaggg gctcggcgcg ggccagggcc
     7021 ggcccgaagg acgccagctc gggcagcacg accatcctca gccacggaaa gcgcgccatc
     7081 gcgatcccga cttcgtgttc gatgcggtcg cggttgtcgt cgctcgccaa ggcgagttgc
     7141 aggccggcga tggcgaagtc gttcatggca gcctcaggcg atggaggcgt acagggtgcg
     7201 gctgtacgca tggtcgggga gctcgtagaa cttcgccgcc gcggccacct cgacgaattc
     7261 gccgcgcagc atcacggcga tgcggtgcga gacgtagcgc gtcgcggcga ggtcgtgcga
     7321 aatgaagagc gccgcgaacc ggtactggcg ctgcaagcgg cggatcaggt tgaggatctg
     7381 gctttgcacc gacacgtcga gcgcgctcac cgcctcgtcg aagacgacga agcgcggccg
     7441 cgtgatcagc gcccgcgcga tcgccatgcg ctgacgctgg ccgcccgaga gctcaccggg
     7501 atagcgccgg gcgaaggcgg cgtcgagacc gacctcgtcg agcatctcgg tgacgcgccg
     7561 gctgcgctcg gcgcgatcga ggccctggat gacgagcggc tcggcgatcg acacgccgct
     7621 cttcaggcgt gggttgagcg cccattcggg atgctggaag acgatcgcga gcgcgccctc
     7681 gcggcgcacc cgcgcatcga aggcccttcc ttcgaagcgg aacgtgccgt acgtcggtgc
     7741 gatcaggccc agcgcgacac ggccgagcgt cgtcttgccg gagcccgatt cgccgaccag
     7801 gcccagcgtc tcgccgggcg cgatcgcgag gtcgacgtgc ctgaccgcgg acaccgcggt
     7861 cggtttccag aacccgccct tgcggtaagt gacgccgacg gcgcgcagtt cgatggtggg
     7921 cgccggctct gtcatggccc ggccaccggt gtcggccgcg agcgcgtcaa gccgccggcc
     7981 gcgaagtggc aggcgacgaa cctctcgtcg atcgcgtgcg cggcggggcg ctccgcgacg
     8041 caacgcggtt gcgcgaattc gcagcgcggc gcgaacgcgc agtctgtcga tgcacggcgc
     8101 agcaccggcg gaacgccggg gatcggctcg agttctccgc ccggcccctc gttgccggcg
     8161 gcggccttga tgagggcgcg cgtgtagggg tggagtgggt cttcgaagac gcgctggctc
     8221 gggcccgact cgatgacgcg gccgccgtac atcaccagga tgcgctcgca ccgacgcgcg
     8281 accatacgca agtcgtggct catgatgacg aggctcgcgc ccgtggtggc gcgcagggaa
     8341 gtcagcaggt cgaggatcac gccctggatc gacgcatcga gcgacgcggt cggctcgtct
     8401 gcgatcagca cgccggggtt gcgtgcgatg gcgagcgcga tgacgacgcg ctgtgccatg
     8461 ccgccggaga gttcgtgcgg aaaactccct gccacgctcg ccgggtcttc cagtccgacg
     8521 cggccgagca gtgcgtcgat cgtcgcgcgc gccgggtcgc tgccgatcgc cagcgcgacc
     8581 tgccggccga cgcgcatcgt cggatcgagc gccgacatcg gattttggta gacgaagccg
     8641 aggcggtcgc gacggatcgt ccggagttcg gcgacggagc aggagaggac cgagcggcct
     8701 tcgacgtgga tgtcgccgca ct
//
LOCUS       DASVHM010000307         1794 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1393032, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000307 DASVHM010000000
VERSION     DASVHM010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1393032"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..430)
                     /locus_tag="VF308_05805"
     CDS             complement(<1..430)
                     /locus_tag="VF308_05805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylmalonate decarboxylase"
                     /protein_id="HEX7436202.1"
                     /translation="MTRTATPPCLGLIVPPRAGVVPADGPALYGDRVRFIARGLGLAE
                     ISTRGYEEVIDHVVELAADLAANGAQALSLMGTSLSFFRGARFNATLEAEMARRTGLP
                     CTTMSNAIVRGMRALGLTRVAVATAYIDEVNARLAAYLAAG"
     gene            complement(449..>1794)
                     /locus_tag="VF308_05810"
     CDS             complement(449..>1794)
                     /locus_tag="VF308_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-hydroxylase N-terminal
                     domain-containing protein"
                     /protein_id="HEX7436203.1"
                     /translation="KLEAVRLVCQETGCAQRYLGGDALSAIWQSAHRVDAERKTEYVA
                     RVRAYIERVYAGDLTLGVAMTDAKGDRSKRPYRQPNPDAYLHIAERRADGVVLSGVKA
                     IVTGAPYMHELLVMPGRNMSEHDADFAVCCALPVDAPGLTIVARPAGRPGEKAAKFSG
                     RYGQSTGVVIFDQVFVPWERVFLAGEWEYAGPLVYDYSAHHRHTCIAARAGFGDLLIG
                     AGALMTEANGIDLDRAGNLRDQMVDLIKIVEGFYACGVAASVYCSPDARAGVALPDPV
                     FANIGKLLLATQIYDMHRIAHHVSGGLIVTLPGPDEDHNPATAGRLSEVLGARSDIPY
                     EKRIEVARFVEDLTASYQAGWYSVISLHGGGSPEAMKMEIWRNYPLGNKVDLVERLLE
                     RGILTDETRAITRNRQPGRCCDSGCLVPAAPQMSGLAHEQSIAPANIGGRRGDAP"
BASE COUNT          260 a          595 c          652 g          287 t
ORIGIN      
        1 cgccggccgc caggtaggcg gcgagccggg cgttgacctc gtcgatgtag gcggtcgcga
       61 ccgcgacccg ggtgaggccg agcgcccgca tgccgcgcac gatggcgttg ctcatcgtcg
      121 tgcagggcag tccggtgcgc cgcgccattt cggcttcgag cgttgcgttg aagcgggcgc
      181 cgcgaaagaa gctgagcgac gtccccatca acgagagggc ctgcgcgccg ttcgccgcga
      241 ggtcggcggc gagctcgacc acgtggtcga tcacttcttc gtagccgcgg gtcgagatct
      301 cggcgaggcc gagaccgcgg gcgatgaaac ggacccggtc accgtagaga gccgggccgt
      361 ccgcgggcac aacgcctgcg cgcggcggca cgatcaggcc gaggcagggt ggggtggcgg
      421 tgcgcgtcat ggaagccttg ccgccgcgtc acggtgcatc gccgcgccgg ccgccgatgt
      481 tcgccggcgc gatcgactgt tcgtgcgcca gcccactcat ctgcggggct gccggcacca
      541 ggcatccgct gtcgcagcag cggccgggtt ggcgattgcg cgtgatggcg cgggtctcgt
      601 cggtgaggat gccgcgctcg agcaggcgct cgaccaggtc gaccttgttg ccgagcgggt
      661 agttgcgcca gatttccatc ttcatggctt cgggcgaacc gccgccgtgc aggctgatga
      721 ccgaatacca gccggcctga tagctcgcgg tcaggtcttc gacgaagcgc gccacctcga
      781 tgcgtttttc gtaggggatg tccgagcgcg cgccaagcac ttcggagagg cgcccggcgg
      841 tggctgggtt gtggtcctcg tcgggtccgg gcaaggtcac gatcaggccg ccggacacat
      901 ggtgggcgat gcggtgcatg tcgtagatct gggtggcgag cagcagcttg ccgatgttgg
      961 cgaagaccgg gtcgggcagc gccaccccgg cgcgcgcgtc cggactgcag tagaccgaag
     1021 cggccacgcc gcaggcatag aacccctcga cgatcttgat gaggtcgacc atctggtcgc
     1081 gcaggtttcc ggcgcggtcg aggtcgatgc cgttggcttc ggtcatcagc gcgcccgcgc
     1141 cgatcagcag gtcgccgaag ccggcgcgtg ctgcgatgca ggtgtggcgg tgatgcgcgc
     1201 tgtagtcgta caccagcggc ccggcgtact cccactcacc cgccaggaag acccgttccc
     1261 agggaacgaa cacctggtcg aagatgacca cgccggtcga ctggccgtag cgcccgctga
     1321 acttggcggc cttctcgccg ggccggcctg ccgggcgggc gacgatcgtc aggcccggtg
     1381 catcgacggg aagcgcgcag cacacggcga agtcggcgtc gtgctcgctc atgttgcggc
     1441 ccggcatcac gagcagttcg tgcatgtagg gtgcgccggt cacgatcgcc ttcacgcccg
     1501 acagcacgac gccatcggcc cgtcgctccg cgatgtgcag ataggcatcc gggttcggct
     1561 gtcgataggg tcgcttgctg cggtcgccct tggcgtcggt catcgccacg ccaagcgtca
     1621 ggtccccggc atagacacgc tcgatgtagg cgcgaacccg cgccacgtat tcggtcttgc
     1681 gctcggcatc gacccggtgc gccgactgcc agatcgccga gagggcatcg ccgccgaggt
     1741 agcgctgcgc gcagcccgtt tcctggcaga ccaggcgcac ggcctcgagc ttgt
//
LOCUS       DASVHM010000308         2751 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1393067, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000308 DASVHM010000000
VERSION     DASVHM010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1393067"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1753)
                     /locus_tag="VF308_05815"
     CDS             complement(<1..1753)
                     /locus_tag="VF308_05815"
                     /inference="COORDINATES: protein motif:HMM:NF013647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033179 - proton-transporting V-type
                     ATPase, V0 domain [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATPase 116kDa subunit family protein"
                     /protein_id="HEX7436204.1"
                     /translation="MIIEMARVRIAGPRQQLDPTLRLLQDIGDLHLIAPATIDGVVAR
                     PGGPWPRLLRHARRMLDDVDGVLAALPAGAARNSPAARPKSLPPAARRVRRLRRELAG
                     LARASTELAEEQALLTQYRAFFEAFDPLLQRTPRWPDARASFVLLRAGAGASVVNLEK
                     SLKSVAGAQVEMHARPLPSGETAVLMLASGSAAAQVESLLAAARLDELPAPRALGESN
                     LLRAMPALRARLAEVEAQLRANDARRAEIAAEARPELEALQTQLHDLLLLAKAQAQIR
                     AGELLFVIEGWMPEPALASLRARVARELGSEIVVAKVGTEPWTRGDAPVALANPRLFR
                     PFELITRAFPLPRYGSIDPTPFVAVFFPMFFGLMLGDVGYGLLLAGIATVVRWRSRPG
                     STARAVSEMALGCALFTIVFGVLFGEFFGKLGASFGMRPLAFDRENPLAPFLMFTIAL
                     GVVHVVLGLVLAVIGAWRQGHRRQAMGRGLTIAMIALSALALLAAFKVLPSRLFTPAA
                     IAVLIAFPVLIALEGIIAVVELMSAFGHILSYARIMALGTASMMLAIIANRMVGALGS
                     ALVGVTFALLFHLVNFAI"
     gene            complement(1750..2193)
                     /locus_tag="VF308_05820"
     CDS             complement(1750..2193)
                     /locus_tag="VF308_05820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436205.1"
                     /translation="MPFISGGRILFELHGSQPCRDPPPIGGEPVKGKVPPQPNDPNWA
                     GLLDAEGKLEAEIAAAARDARARVANARAAAASTLPDPEALAALAMAQEQADIERQRS
                     ELAHIVEEADTTVRALTQAPDSLIDALAQLALGAVLADKLPAERP"
     gene            complement(2317..>2751)
                     /locus_tag="VF308_05825"
     CDS             complement(2317..>2751)
                     /locus_tag="VF308_05825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX7436206.1"
                     /translation="VHRGIAQFMGYGSYSAAVAEVSVGAKGEVKVHRMVLALDCGHAV
                     NPGQIAAQVEGSVAYGLSAALYGEITIENGRARQSNFDTYPVLRLAEMPPVETVIVPT
                     HDFWGGVGEPTICVVTPALLNAIRAATGRAVRSLPLRASALV"
BASE COUNT          457 a          954 c          952 g          388 t
ORIGIN      
        1 cgatcgcgaa attgacgaga tgaaacaaca acgcgaatgt cacgccgacg agcgcgctgc
       61 cgagggcgcc gaccatgcgg ttggcgatga tcgcgagcat catcgatgcc gtgccgagcg
      121 ccatgatccg cgcgtaggag aggatgtgac cgaaggcgga catgagctcc accaccgcga
      181 tgatgccttc cagcgcgatc aggaccggaa acgcgatcag cacggcaatc gccgccggcg
      241 tgaacaagcg ggagggcagc accttgaacg cggcgagcag cgcgagcgcc gagagggcga
      301 tcatcgcgat cgtgaggccg cgccccatgg cttggcggcg gtgcccctgg cgccaggccc
      361 cgatgaccgc gagcacgaga ccgagcacga cgtgaacgac gccgagcgcg atggtgaaca
      421 tcaggaacgg cgcgagcgga ttctcacggt cgaaggcgag cgggcgcatt ccgaagctcg
      481 cgccgagctt gccgaagaac tcgccgaaca gcacgccgaa cacgatcgtg aacagcgcac
      541 agccgagcgc catttccgag accgcgcggg cggtactgcc cgggcgcgag cgccaccgca
      601 ccaccgtggc gatccccgcg agcagcaaac cgtagccgac gtcgcccagc atcagcccga
      661 agaacatcgg gaagaacacg gcgacgaaag gtgtcggatc gatcgaaccg tagcgtggca
      721 gcggaaacgc gcgggtgatg agctcgaacg gccggaacag tcgaggattg gcgagcgcga
      781 ccggcgcgtc gccgcgggtc cacggctcgg tccccacctt cgcgacgacg atttccgaac
      841 cgagttcgcg cgcgacgcgt gcgcgcagcg acgcaagcgc cggctcgggc atccagcctt
      901 cgatgacgaa cagcagttcg ccggcgcgaa tctgcgcctg cgctttggca agcagcagca
      961 ggtcgtggag ctgcgtctgc agcgcttcga gttcgggtcg cgcctcggct gcgatttcgg
     1021 cacgccgcgc atcgttcgcg cgaagctgtg cctcgacctc cgcgagccgc gcccgcagcg
     1081 cgggcatggc gcgcaacagg ttggactcgc ccaaggctcg cggtgccggc agctcgtcga
     1141 ggcgcgcggc ggccagcagg ctctcgacct gcgctgcggc actgccggac gccagcatca
     1201 gaaccgcggt ttcgccgctc ggcagcggcc ttgcgtgcat ctcgacctgg gccccggcca
     1261 cgctctttag gctcttttca aggttcacga ccgacgcacc ggctccggct cgcagcagca
     1321 cgaacgaagc ccgggcatcg ggccagcgcg gcgtgcgttg cagcagcggg tcgaaggctt
     1381 cgaagaacgc gcggtactgc gtgagcaagg cctgttcttc ggcgagttcg gtgcttgcgc
     1441 gtgccaatcc ggccagctcc cggcgcagcc gacgcacgcg acgggccgca ggcggcaacg
     1501 acttagggcg cgccgctggc gaattccgcg ctgcaccggc gggcaacgca gcgagcaccc
     1561 catcgacgtc gtcgagcatg cggcgagcgt ggcgcaggag ccgtggccac ggtccgccgg
     1621 gccgcgcgac gactccatcg atggtcgcgg gcgcgatgag gtgcaggtcg ccgatatcct
     1681 gcagcaggcg caatgtcgga tcgagctgct gccgggggcc ggcgatgcgc acccgtgcca
     1741 tctcgatgat caaggtcgct ccgccggaag tttgtcggcc aggacggcgc cgagcgcaag
     1801 ctgcgcgagc gcatcgatca gcgaatccgg cgcctgcgtc aacgcgcgca ccgtggtgtc
     1861 cgcctcttcg acgatgtgcg cgagttcgct gcgttgccgc tcgatgtcgg cctgctcctg
     1921 cgccatggca agcgcggcca atgcctctgg atccggcagc gtcgatgcgg ccgccgcgcg
     1981 ggcgtttgcg acacgtgccc gggcgtccct tgccgcggcc gcgatctccg cctcgagctt
     2041 tccctcggca tcgagcagac ctgcccagtt cgggtcgttc ggctgcggcg gtaccttgcc
     2101 tttcacgggc tctcccccaa tcggtggcgg gtctcggcat ggttgcgacc catgcagctc
     2161 aaaaagtatc cgcccccccg agatgaaagg cattgacttc gcgcaagacg cgccacatgc
     2221 aagcgggcgc ggagccgaag cgtgggcttg tttcgaccgg ctcggggtgc ccggctcggt
     2281 gcctccttcg acacgccggc accgccgtgc gcgtggtcac acgagcgcgc tcgcccgcaa
     2341 cggcaggctg cgcaccgcgc gcccagtggc cgcacggatc gcgttcagca gcgccggtgt
     2401 cacgacgcag atcgtcggtt cgccgacgcc gccccagaag tcatgggtcg gcacgatcac
     2461 ggtctcgacg ggcggcatct cggccagccg cagcaccggg taggtgtcga agttgctttg
     2521 ccgtgcgcgg ccgttctcga tcgtgatctc gccgtacagc gccgcgctca agccgtaggc
     2581 gacggagccc tcgacctggg ccgcgatctg gccggggttg acggcatggc cgcaatcgag
     2641 cgcgagcacc atgcggtgca ccttgacttc acccttcgcc ccgaccgaga cctcggccac
     2701 cgctgccgag tagctgccgt agcccatgaa ctgggcgatg ccgcggtgca c
//
LOCUS       DASVHM010000309         2573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_95108, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000309 DASVHM010000000
VERSION     DASVHM010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95108"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(29..547)
                     /locus_tag="VF308_05830"
     CDS             complement(29..547)
                     /locus_tag="VF308_05830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010463410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HEX7436207.1"
                     /translation="MKIKSERDFWSGLMFVAVGVVFAVGATNYSMGPACPPNDPCAVN
                     LWARLSQLSAHPGAGYFPLGLSLLLALLGAIVLFKSLTIESESGDKVGAFAWRPLLVI
                     VLAIAVFGAMLEPLGLALTIPVLVVISSFAGDEFHWKGVLANAVALTIGSWAIFVWGL
                     KLTIPVWPWFVG"
     gene            complement(642..2423)
                     /locus_tag="VF308_05835"
     CDS             complement(642..2423)
                     /locus_tag="VF308_05835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007852835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HEX7436208.1"
                     /translation="MASIDLSLNVVSHGKLTWRTVLAWLRDDKVVSADDVERTARRFA
                     GGNSAQHPLVRIGSAGLTRVGDGKLLDTETLTEWLAKRTKLPYMRVDPLKVDVGRVAD
                     VMSIQYAERRHALPLTFGLSDVTIATCEPLDIAWVPEIEAHTRRHVKLVIVNPIEIAR
                     YTTEFYALSRSVRNATKMGESAALANFEQLVELGKSNKQLDANDSGVIQVVDWLWQYA
                     FDQRASDIHLEPRRERSVIRFRIDGVMHTVYQLPPGVMSAMVARVKLLGRMDVIERRR
                     PLDGRIKVRNPVGDEIEMRLSTLPTAFGEKMVMRIFDPDTTVKTLESLGFGNHDGRRW
                     EELVARPHGIILVTGPTGSGKTTTLYSTLRRLATDEVNVCTIEDPIEMIQPAFNQTQV
                     QSGIDLGFTEGLRALMRQDPDIIMVGEIRDLATADMAIQASLTGHLVFSTLHTNDSAS
                     AITRLNDLGVAPYLIGSTLIGVLAQRLVRTLCPACKVPDAEVTRETLHEVVKPWRLNG
                     GVRPYKAVGCLECRMTGFRGRAGLFELLTVSDAARSTIQPVCDEGKLRQQALQDGLRP
                     LRLAGAMKVAEGVTTLDEVLRATPAWE"
BASE COUNT          426 a          836 c          887 g          424 t
ORIGIN      
        1 tatttatgcg aagttctttg ccggaagatc agcccacgaa ccacggccat accggaatcg
       61 tgagcttcag accccagacg aagatcgccc aggagccgat cgtgagggcg acggcattgg
      121 ccagcacacc tttccagtga aactcgtcac cggcgaagct ggaaataacg acaagtacag
      181 gaatcgtcag ggccaagcca agcggctcga gcatcgcgcc aaagacggcg atggcgagca
      241 cgatcacgag caggggccgc caagcgaaag cgccgacctt gtcaccactc tcgctctcga
      301 tcgtgagcga tttgaacagc acaatcgcgc cgagcagggc gagaagaagg gacagcccga
      361 gcggaaaata gccggcgccc ggatgcgccg acagctgcga cagccgggcc cacaggttga
      421 ccgcgcacgg atcgttgggc gggcacgccg gacccatgct gtagttggtc gcgccgaccg
      481 cgaagacgac gccgacggcg acgaacatca ggcccgacca gaagtcgcgc tcgctcttga
      541 ttttcacgaa gcctcgctgc cttgcgctga agcggcgatt ctaggcagcg gccctcgcgg
      601 gccatgtctg gtttacaccg agcgcacccg gtgcgccgct gctattccca ggcgggcgtc
      661 gcgcgcagga cttcgtcgag cgtggtcacg ccttcggcca ccttcatcgc cccggccaaa
      721 cgcagtgggc gcaggccgtc ctgcaaggcc tgctgcctga gcttgccttc atcgcacacc
      781 ggctggatcg tgctgcgcgc ggcgtcgctc acggtcagca gctcgaacag cccggcgcgg
      841 ccgcgaaagc ccgtcatccg gcattcgagg caaccgaccg ccttgtacgg tcgaaccccg
      901 ccgttcagcc gccacggctt gacgacctcg tgcagggtct ctcgcgtgac ctcggcgtca
      961 ggcaccttgc acgccgggca aagggttcgc acgaggcgct gcgccagcac gccgatcagc
     1021 gtcgagccga tcaggtaggg cgcgacgccg aggtcgttga ggcgggtgat cgccgacgcc
     1081 gagtcgttgg tgtgcagtgt cgagaagacg aggtgaccgg tgagcgacgc ctggatcgcc
     1141 atgtcggcag tcgccaggtc gcggatctcg ccgaccatga tgatgtccgg gtcctggcgc
     1201 atcagcgcgc gcaggccttc ggtgaagccg aggtcgatgc cggactgcac ctgcgtctgg
     1261 ttgaacgccg gctggatcat ctcgatcggg tcctcgatcg tgcagacgtt gacctcgtcg
     1321 gtggcgaggc ggcgcaaggt cgagtagagc gtcgtcgtct tgcccgagcc ggtcgggccg
     1381 gtgaccagga tgattccgtg cggccgcgcg accagctctt cccagcgccg accgtcgtgg
     1441 ttgccgaagc cgaggctctc gagcgtcttg acggtcgtgt cgggatcgaa gatccgcatc
     1501 accatcttct cgccgaacgc ggtcggcaag gtcgacaggc gcatctcgat ttcgtcgccg
     1561 accgggttgc gaaccttgat gcggccgtcg agcgggcggc gccgctcgat cacgtccatc
     1621 cggccgagca gtttgacgcg cgcgaccatc gcgctcatca cgccgggcgg cagctggtag
     1681 acggtgtgca tgacgccgtc gatgcgaaag cggatgacgc ttcgctcgcg ccgcggctcg
     1741 aggtggatgt cggaggcgcg ctggtcgaac gcgtattgcc agagccagtc gacgacctgg
     1801 atcacgcccg agtcgttcgc gtcgagctgc ttgttgctct tgccgagctc gaccagctgc
     1861 tcgaagttgg cgagcgccgc cgactcgccc atcttggtgg cgttcctgac cgagcgcgag
     1921 agcgcgtaga actcggtcgt gtagcgggcg atctcgatcg ggttgacgat caccagcttg
     1981 acgtggcggc gcgtgtgcgc ctcgatctcg ggcacccagg cgatgtcgag cggctcgcag
     2041 gtggcgatcg tcacgtcgct gaggccgaag gtgagcggca acgcatggcg gcgctcggcg
     2101 tactggatcg acatcacgtc ggcgacgcgg ccgacgtcga cctttagcgg gtcgacgcgc
     2161 atgtagggca gcttggttcg cttggcgagc cattcggtca gcgtctcggt gtcgagcagc
     2221 ttgccgtcgc cgacgcgcgt cagcccggca ctgccgatcc gcaccagcgg gtgctgggcg
     2281 ctgttgccgc cggcgaagcg ccgcgccgtg cgctcgacgt cgtcggcgct cacgaccttg
     2341 tcgtcgcgca gccaggcgag caccgtgcgc caggtcagct tgccgtggga gacgacgttg
     2401 agcgagaggt cgatcgaggc catgctcgcc ggccgcgccg tcgagatcga gcgctcgaag
     2461 tcggccgccg cgagatcgcg ctgcaccgat cgcagcgccg cggccgttgg ctgcttgccg
     2521 agatccggat ccgcgctctt ggttttcatt cgaaaggagg tgtgggcgaa agg
//
LOCUS       DASVHM010000310         2315 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_744731, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000310 DASVHM010000000
VERSION     DASVHM010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2315
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_744731"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..471
                     /locus_tag="VF308_05840"
     CDS             <1..471
                     /locus_tag="VF308_05840"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEX7436209.1"
                     /translation="EGELQSRAIGWAKIAWLPVVVGMVLISMATPWISETVRHRWFAL
                     PEIIALSAIPLATGAALWTVRALLGGRLVRGVLCWLPFALMIGVFLLGFLGLAYSIYP
                     FVVIDRLTVWQAASSTEALEFILVGVCISVPTIAGYTIYSYRVFRGKTGELKYA"
     gene            494..1267
                     /locus_tag="VF308_05845"
     CDS             494..1267
                     /locus_tag="VF308_05845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006763398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEX7436210.1"
                     /translation="MTATTPPAFVRPARFSAAEWEARVELAAAYRIFDHLGWTELIYN
                     HISLRVPDEDSHYLINPFGLHYSEVCASNLVKVDLEGRIVGHADWPINPAGITFHGAI
                     HATLPDAHCVMHLHTTATQAVCCLKEGLVFTNFYAAQLYGKIAYHDFEGITVHADEGA
                     RILKSAEGRPVLLLRNHGPVTIGATVAQALVLMWTVTRACEVQLATQAMGEAMPIPRA
                     VLEKCVADSFQFNPKYSAGEDAFAALRRLVDRKDPTYRM"
     gene            complement(1286..2017)
                     /locus_tag="VF308_05850"
     CDS             complement(1286..2017)
                     /locus_tag="VF308_05850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007864937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbC family protein"
                     /protein_id="HEX7436211.1"
                     /translation="MNRTSRVVTALVLALSLAPAAFADDAAIRKSISERVPQFPKIDE
                     ITKTPIPGVYELRVGTDLYYSDEQGNYIIEGQLVDTKTRVNLTEERIAKLTAIDFKAL
                     PFKDAMVWKQGTGERKLVVFADPNCGYCKKFEKDLQAVKDVTVYTFLYPILGGDSPEK
                     SKQIWCAKDNTKAWRDWMLKGTAVTDSPQCDISALQRNFAFGQKHRIRGTPGLVFEDG
                     RHQAGAMNTEQIEKQLVATRTKSPS"
     gene            complement(2027..>2315)
                     /locus_tag="VF308_05855"
     CDS             complement(2027..>2315)
                     /locus_tag="VF308_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX7436212.1"
                     /translation="LAGQGLNLGLADVAALSAAIAEREPWRGLGDERLLRRYVRQRAT
                     PTWAMTRITDGLLRLFAEPSAPIRELRNNGMSIVNRVAPLKRWLTARALDS"
BASE COUNT          353 a          762 c          780 g          420 t
ORIGIN      
        1 gagggcgagc tgcagtcccg ggcgatcggc tgggcgaaga tcgcctggct gcccgtcgtc
       61 gtcggcatgg tcctgatctc gatggcgaca ccgtggatca gcgagacggt gcgccaccgc
      121 tggttcgcgc tgcccgagat catcgccctc agcgcgatcc cgctcgccac cggcgcggcg
      181 ctctggaccg tgcgcgccct gctcggcggg cggctggttc gcggcgtgct ctgctggctg
      241 ccgttcgcgc tcatgatcgg cgtcttcctg ctcggcttcc tcggcctggc gtacagcatc
      301 tatccgttcg tcgtcatcga ccggctcacg gtctggcagg cggcgagcag caccgaggcg
      361 ctcgagttca tcctcgtcgg cgtctgcatc tcggtgccga cgatcgccgg ctacacgatc
      421 tattcgtacc gcgtcttccg cggcaagacc ggcgagctga aatacgcttg agcctatccg
      481 caaggagtcc gccatgaccg caacgacccc gccggccttc gtccggcccg cccgcttcag
      541 cgccgccgaa tgggaggcac gcgtcgagct cgccgccgcc taccgcatct tcgatcacct
      601 cggctggacc gagctcatct acaaccacat ctctttgcgc gtgccggacg aggactcgca
      661 ctacctcatc aacccgttcg gcctgcacta ctcggaggtg tgcgcctcga acctggtcaa
      721 ggtcgatctc gaggggcgca tcgtcggcca cgccgactgg ccgatcaatc cggccggcat
      781 caccttccac ggcgcgatcc acgcgaccct gccggacgcg cattgcgtga tgcacctgca
      841 tacgacggcg acgcaggcgg tgtgttgcct gaaggaaggg ctagtcttca ccaacttcta
      901 cgccgcgcag ctgtacggca agatcgcgta ccacgacttc gagggcatca ccgtccacgc
      961 cgacgaaggc gcgcgcatcc tgaagagcgc ggaaggccgg ccggtgctcc tgctgcgcaa
     1021 ccacgggccg gtgacgatcg gcgccaccgt ggcgcaggcg ctggtgctga tgtggaccgt
     1081 gacccgggcc tgcgaggtgc agctggcgac gcaggcgatg ggcgaggcga tgccgatccc
     1141 gcgcgcggtg ctcgagaaat gcgtcgccga ttcgttccag ttcaacccga agtacagcgc
     1201 cggcgaagat gcgttcgccg cgctgcggcg gctggtcgac cgcaaggacc cgacctaccg
     1261 catgtagcga gccgggcgcg cccgctcagc tcgggctctt ggtgcgcgtg gcgacgagct
     1321 gcttttcgat ctgctcggtg ttcatcgcgc cggcctgatg gcggccgtcc tcgaagacga
     1381 ggccgggcgt gccgcggatg cggtgcttct ggccgaacgc gaagttgcgc tgcagcgccg
     1441 agatgtcgca ctgcgggctg tcggtgaccg cggtgccctt cagcatccag tcgcgccagg
     1501 ccttggtgtt gtccttcgcg caccagatct gcttcgactt ctcgggcgaa tcgccgccga
     1561 ggatcggata gagaaaggtg tagacggtga cgtccttgac ggcttggagg tccttttcga
     1621 acttcttgca gtagccgcag ttcggatcgg cgaagacgac gagctttctc tcgcctgtcc
     1681 cctgcttcca gaccatcgcg tccttgaatg gcagcgcctt gaagtcgatc gcggtgagct
     1741 tggcgatgcg ctcttcggtg aggttgacgc gagtcttcgt gtcgacgagc tggccctcga
     1801 tgatgtagtt gccttgttcg tcggaatagt agaggtcggt cccgacgcgc aattcgtaga
     1861 cgccgggaat cggcgtcttg gtgatctcgt cgatcttcgg gaactgggga acacgctcgc
     1921 tgatgctctt gcggatcgcg gcatcgtcgg cgaaggcagc cggcgccagg gacagggcga
     1981 ggaccagggc ggtgacgacg cgcgaggttc ggttcatgat ggtctttcag gagtcgagcg
     2041 cccgggcggt gagccagcgc ttcagcgggg cgacgcgatt gacgatagac attccattgt
     2101 tgcggagttc ccggatcggt gccgacggct cggcaaacaa gcgcaacaaa ccgtcggtaa
     2161 tccgcgtcat cgcccaggtg ggcgtggcgc gttgccgtac ataccgccgc aacaaccgtt
     2221 cgtcgcccag gccgcgccaa ggctcgcgct cggcgatcgc ggccgagagc gcggcgacgt
     2281 cggcaaggcc gaggttgagg ccctggccgg cgagc
//
LOCUS       DASVHM010000311         1841 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1249600, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000311 DASVHM010000000
VERSION     DASVHM010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1841
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1249600"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1584)
                     /gene="scpA"
                     /locus_tag="VF308_05860"
     CDS             complement(<1..1584)
                     /gene="scpA"
                     /locus_tag="VF308_05860"
                     /EC_number="5.4.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004494 - methylmalonyl-CoA mutase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
                     /protein_id="HEX7436213.1"
                     /translation="MSEEQLPNSDALDAWRRSAARSAPGGSLERLNWVTPEGIVVKPL
                     YTAADVRGLAHADTLPGFPPYLRGPQATMYAVRPWTIRQYAGFSTAEASNDFYRKGLA
                     AGGQGVSVAFDLATHRGYDSDHPRVTGDVGKAGVAIDSVEDMKILFDGIPLDSVSVSM
                     TMNGGVLPVLAGYIVAAEEQGVAQERLSGTIQNDILKEFMVRNTYIYPPAPSMRIVGD
                     IIEYTARNMPRFNSISISGYHMQEAGANQALELAFTLADGREYVKTALAKGLDVDEFA
                     GRLSFFWAIGMNFYLEIAKMRAARLLWWRIMKAFDAKSPKSLMLRTHCQTSGWSLTEQ
                     DPYNNVVRTTIEAMAAVFGGTQSLHTNALDEAIALPTEFSARIARNTQLIIQEETHIP
                     NVVDPWAGSYMMEKLTQDMADKAWEIIQEVDAMGGMVEAVQSGWAKLRIEASAAEKQA
                     RIDSGLDVIVGVNKYRLGSEDRIDTLDIDNLAVRENQVRRLQALRATRDGAAVRRMLD
                     ALTACAESGAGNLLDLAIKA"
     gene            1664..>1841
                     /locus_tag="VF308_05865"
     CDS             1664..>1841
                     /locus_tag="VF308_05865"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011000898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEX7436214.1"
                     /translation="MTGPSVSLIAAVTRNGGIGRNNTLLVRLPEDMAHFKRTTLGSPI
                     VMGRKTWDSLGRALP"
BASE COUNT          268 a          626 c          612 g          335 t
ORIGIN      
        1 cgccttgatc gcgaggtcga gcaggttgcc ggcgccgctc tcggcgcagg cggtcagcgc
       61 atccagcatg cgccgaaccg ccgcgccgtc gcgcgtcgcc cgcagcgcct gcaggcgcct
      121 gacctggttc tcgcgcacgg cgaggttgtc gatgtcgagc gtgtcgatgc ggtcttcgct
      181 cccgagccgg tacttgttga cgccgacgat cacgtcgagg ccggaatcga tgcgggcctg
      241 tttctccgcc gcgctcgcct cgatgcgcag cttggcccag ccgctctgca cggcttcgac
      301 catgccaccc atcgcatcca cttcctggat gatctcccag gccttgtcgg ccatgtcctg
      361 ggtcagcttt tccatcatgt agctgccggc ccaggggtcg accacgttcg ggatgtgggt
      421 ctcttcctgg atgatcagtt gcgtattgcg cgcgatgcgg gcgctgaact cggtgggcag
      481 cgcaatggcc tcgtcgagcg cgttggtgtg caggctctgc gtgcccccga acaccgccgc
      541 catcgcttcg atcgtcgtac gcacgacgtt gttgtacggg tcctgctcgg tcaggctcca
      601 ccccgaggtc tgacagtggg tgcgcagcat caggctcttc ggactcttcg catcgaacgc
      661 cttcatgatc cgccaccaga gcaggcgcgc cgcgcgcatc ttcgcgatct cgaggtagaa
      721 gttcatgccg atggcccaga agaagctgag ccggccggcg aactcgtcga cgtcgagccc
      781 cttggccagc gccgtcttga cgtactccct gccgtcggcg agcgtgaacg ccagctcgag
      841 cgcctggttc gcgcccgcct cctgcatgtg gtatcccgag atcgagatcg aattgaaacg
      901 cggcatgttg cgcgcggtgt attcgatgat gtcgccaacg atccgcatgc tgggcgccgg
      961 cggatagatg taggtgttgc ggaccatgaa ctccttcagg atgtcgttct ggatggtccc
     1021 gctcaggcgc tcctgcgcca cgccctgctc ctcggcggcg acgatgtagc cggcgagcac
     1081 gggcagcacg ccgccgttca tggtcatcga cacgctgacg ctgtcgagcg ggatcccgtc
     1141 gaacaggatc ttcatgtcct cgaccgaatc gatcgcgacc ccggccttgc cgacgtcgcc
     1201 ggtcacgcgc gggtggtcgc tgtcgtagcc gcggtgggtg gcgaggtcga aggcgacgct
     1261 cacgccctgg cccccggcgg cgagtccctt gcggtagaaa tcgttcgagg cctcggcggt
     1321 cgagaagccc gcgtattggc ggatcgtcca cgggcgcacc gcgtacatcg tcgcctgcgg
     1381 cccgcgcagg tagggcggaa agcccggcag cgtgtcggcg tgggccagac cccgcacgtc
     1441 ggcggcggtg tagagcggct tgacgacgat gccttccggc gtgacccagt tcagccgctc
     1501 gaggctgcca ccgggcgcgg aacgggcggc gctccgtcgc cacgcgtcga gcgcatcgga
     1561 attcggcaac tgctcttcgg acatcgctgg cgctccggct cgtgcgttga aggaaatctc
     1621 cggaattatc gccgcgacca ctggcgcggc gacaatctgc gccatgaccg gcccgagcgt
     1681 cagcctgatc gccgccgtga cccgcaacgg cggcatcggc aggaacaata cgctgctcgt
     1741 tcgcctgccc gaagatatgg cgcacttcaa gcgcaccacg ctcggttcgc cgatcgtgat
     1801 gggccgcaag acctgggact cgctgggccg ggcgctgccg g
//
LOCUS       DASVHM010000312         3943 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_600926, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000312 DASVHM010000000
VERSION     DASVHM010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3943
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_600926"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..292)
                     /locus_tag="VF308_05870"
     CDS             complement(155..292)
                     /locus_tag="VF308_05870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436215.1"
                     /translation="MRSIRLRALLADVLALACATAVFVASALELPVDTAVAVPAVAVS
                     R"
     gene            complement(303..758)
                     /locus_tag="VF308_05875"
     CDS             complement(303..758)
                     /locus_tag="VF308_05875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007827769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX7436216.1"
                     /translation="MYKHILVPLDGSDTSRRGLREAITLAMPLQAKLRLMHIISDFAV
                     AVEMANVVDFDKYRSGLHQYGRDLLEATAAEVRAAGLEVSTELRDPKGGRVADAIVEG
                     AREAGCDLIVIGTHGRRGFNRALMGSDAERVLRESSIPVLLVRAVGATS"
     gene            1022..1441
                     /locus_tag="VF308_05880"
     CDS             1022..1441
                     /locus_tag="VF308_05880"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX7436217.1"
                     /translation="MNQPIGSLKDTAKVVTAPAQTSVAEAAGLMLAHGVGAVLVVDND
                     TLAGIFTEHDIVSRVIAPGRDPIAVHIGEVMTREPLTVAPEATLGHALALMHERGFRH
                     LPVVRDGRPVGIVCARNALDPELEDFVVEAHRRQRYL"
     gene            complement(1462..2487)
                     /locus_tag="VF308_05885"
     CDS             complement(1462..2487)
                     /locus_tag="VF308_05885"
                     /inference="COORDINATES: protein motif:HMM:NF015366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
                     /protein_id="HEX7436218.1"
                     /translation="MTATRRSSTAPPDGNARLRRRDVVLAGVGVAAGLRGTPAAAAAF
                     PDRAVRIVVPYSVGVGPDVIARSVAERLARQWGQPVLVDNKPGASGIIAFGEVRRTPA
                     DGYTLFLADTATLAVNPLLHTTLPYDPVLDLVPLTLLFRATFLLWVGAESRLSSVVAL
                     LDAARRAPGKVSYASLGHGHASHVAIETFARAADVHMLHVPFKDAGAMLTAVAVGDVD
                     FTAIGINTASGLMASGKLRPIAVAAKRRLPAYPDIPTLLDAGGPAVEMHPWAALVAVA
                     RTPPPVLEQLRRDIAAVLDLADVRSRAESAGFEITPSTPQALSERIEADIALYAPLIR
                     EGRIARL"
     gene            2744..3487
                     /locus_tag="VF308_05890"
     CDS             2744..3487
                     /locus_tag="VF308_05890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEX7436219.1"
                     /translation="MKVALFVPCYVDAFFPEVGVATLELLERLGCEVDFPLEQTCCGQ
                     PMANSGCQSDARGAEALFARNFAGYDHIVTPSGSCAHHVRDQMTAIEQTPAVQAVRRN
                     TRELVEFLHDVLKVREFPWAEFPHKVGLHIGCATLRGLREAKTSEIAEPAFNKPARLL
                     GAVKGLEFVAPERPDECCGFGGTFSVYEEPVSAKMGHDKVADHQQAGAEYIVSPDMSC
                     VMHQQGCARRAGMPLKFIHIAQVLNGARA"
     gene            3516..>3943
                     /locus_tag="VF308_05895"
     CDS             3516..>3943
                     /locus_tag="VF308_05895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006481909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LUD domain-containing protein"
                     /protein_id="HEX7436220.1"
                     /translation="MTRVDHAEASSKFIEVKDHADFHDKRLWDLRKKRDVESEALPEW
                     EELRSLASAIKEHTLTHLADYLEEFEKNAVANGMVVHWARDAADHNQIVFDILESHDA
                     TTLVKSKSMLTDECEMRPFLENRGIEIVETDLGERIQQLD"
BASE COUNT          616 a         1358 c         1388 g          581 t
ORIGIN      
        1 gcagcgcatc gccgccctcg gcatccggcc tgaccttcgt ctcatgccct ccgagcacta
       61 ccttgccgga tccgggcgcg cgccgggcga tcgcgacctg accgagcttc gcatcccggt
      121 gctggagcct ggcgtccagc gcgacggcgc gacgtcagcg cgagacggcg accgccggca
      181 cggcgacggc cgtgtcgacc ggcagctcga gcgccgaggc cacgaatacg gcggtggcgc
      241 acgccagcgc gaggacgtcg gcgagcaagg cccgcaagcg aatcgatcgc atgccgcgcc
      301 tttcagctcg tcgcgccgac ggcgcgaacg agcaggaccg gaatcgagct ttcgcgcagc
      361 acgcgctcgg cgtcgctgcc catcagcgcg cggttgaagc cgcgccggcc gtgcgtgccg
      421 atgacgatca gatcgcaccc ggcttcgcgc gccccctcga cgatcgcgtc ggcgacgcgc
      481 ccgcccttgg gatcgcgcag ctcggtcgac acctctagcc cggcggcgcg gacttcggcc
      541 gcggtcgcct ccagcaggtc gcgcccgtac tggtgcaggc ccgagcggta cttgtcgaaa
      601 tcgaccacgt tggccatctc gaccgcaacc gcgaagtcgc tgatgatgtg catcaggcgc
      661 agctttgcct gcaacggcat cgccagggtg atcgcctcgc gcagcccccg tcgcgatgtg
      721 tcactgccgt cgagcggcac gaggatgtgc ttgtacatgg cgtcctcctt tcaaggctgg
      781 acgtcgccaa tctagcggcg tgccatccgc ggcccttgag acggatcaag gaagccggcg
      841 cggcaggttg ccgcccgcgg accggcgtgc cgcgcgctgc cagcgccgga aagacttaac
      901 gctagcgtgc tgcccgcggg ttgatctgaa gcaaatctgg ccaacgtttg tgcagggtca
      961 aagtggaggc cgaccagcgg cgtagcgtgc tctgctggtg cctgcatcaa aggccgccat
     1021 gttgaatcag ccgatcggca gcctgaagga caccgccaag gtcgtgacgg cgccggcgca
     1081 gacgagcgtc gccgaggccg cgggcctgat gctggcgcat ggcgtcggcg cggtcctggt
     1141 ggtcgacaac gacaccctcg ccggcatctt caccgagcat gacatcgtct ctcgcgtcat
     1201 cgcccccggg cgcgatccga tcgcggtcca catcggcgag gtgatgacgc gcgagccgct
     1261 gaccgtcgct ccggaagcga cgctcggcca tgcgctggcg ctgatgcacg agcgcggttt
     1321 tcgccacctg ccggtggtcc gggacggcag gccggtggga atcgtctgcg cgcgcaacgc
     1381 gctcgatccc gagctcgagg acttcgtcgt cgaagcgcac cggcgccaga gatacctcta
     1441 gccgctcgcg gcggccccgg ctcagagccg cgcgatgcgg ccctcgcgaa tcagcggcgc
     1501 gtagagcgcg atgtcggctt cgatgcgctc gctgagcgcc tgcggcgtcg acggcgtgat
     1561 ctcgaagccg gcactctcgg cacggctgcg gacgtcggcg aggtcgagca cggcggcgat
     1621 gtcgcgccgc agttgttcga gcaccggcgg cggggtccga gcaacggcga ccagagccgc
     1681 ccagggatgc atctcgaccg ccggcccgcc ggcgtcgagc aaggtcggga tgtcggggta
     1741 cgccggcagg cgacgcttcg ccgcgaccgc gatcggccgc agcttgccgc tcgccatcag
     1801 gcccgaggcg gtgttgatgc cgatcgcggt gaagtcgacg tcgccgacgg cgaccgccgt
     1861 gagcatcgcg ccggcatcct tgaacggcac gtgcagcatg tgcacgtcgg cggcgcgtgc
     1921 gaaggtctcg atcgcgacgt ggctggcgtg gccgtggccg agcgacgcgt agctgacctt
     1981 gcccggcgcg cgccgcgccg catcgagcag ggcgacgacg ctgctcaggc ggctctcggc
     2041 gccgacccag agcaggaagg tggcgcgaaa gagcagcgtc aacggcacga ggtcgagcac
     2101 cgggtcgtag ggcagggtcg tgtgcagcag cgggttcacc gcgagcgttg ccgtgtcggc
     2161 gaggaacagc gtgtagccgt cggccggcgt ccgtcgcacc tcgccgaagg cgatgatgcc
     2221 cgaggcgccc ggcttgttgt cgacgagcac cggctggccc cactggcgcg ccagccgctc
     2281 ggcgacgctg cgcgcgatga cgtcggggcc gacgccgacc gagtagggaa cgacgatgcg
     2341 cacggcgcgg tcgggaaagg ctgccgctgc cgccggcgtg ccgcgcagac ccgccgcgac
     2401 gccgacgccc gcgagcacga cgtcgcgcct gcgcaagcgc gcgttgccgt cggggggagc
     2461 tgtcgagctg cgtctcgttg cggtcatcgt ggtgtagatt gctgcggctt cgcgcctcgc
     2521 gcggcgtcgg attcttggct tgcacgggac gcaccgactt gcgccacctc aacccggagc
     2581 gtggcatcgc gcggcgccgg ccgcatgccg gggttttcca tgagtcgttc gctccggcgg
     2641 gttgacatgg ctcaaccgga cgccacagcg gtgccgggac actgcgtcgg cgctcgcggg
     2701 gtcgtcgccg gggcgccagc ggctcaacgc gggtgtcctt cgcatgaaag tggccttgtt
     2761 cgtgccttgc tatgtcgatg ccttcttccc ggaggtcggc gtcgccacgc tcgagctgct
     2821 cgagcgcctc ggctgcgaag tcgacttccc gctcgaacag acctgctgcg gccagccgat
     2881 ggccaacagc ggctgccaga gcgacgcgcg cggcgccgag gcgctgttcg cgaggaactt
     2941 cgcgggctac gaccacatcg tcacgccatc cggaagttgc gcccaccacg tgcgcgacca
     3001 gatgaccgcg atcgagcaga ccccggcggt gcaggcggtg cggcgcaaca cgcgcgagct
     3061 cgtcgagttc ctgcacgacg tgctcaaggt ccgcgaattc ccgtgggccg agttcccgca
     3121 caaggtcggg ttgcacatcg gttgcgccac gctccgcggc ctgcgcgagg cgaagacctc
     3181 cgagatcgcc gagccggcct tcaacaagcc ggcgcgtctg ctcggcgccg tgaagggcct
     3241 tgaattcgtc gcgccggagc ggcccgacga atgctgcggc ttcggcggga cgttctcggt
     3301 gtacgaggaa cccgtctccg cgaagatggg acacgacaag gtcgccgacc atcagcaggc
     3361 aggcgccgaa tacatcgtct cgcccgacat gtcgtgcgtg atgcaccagc aaggctgcgc
     3421 gcgtcgcgcc gggatgccgc tcaagttcat ccacatcgcc caggtgctca acggggcgcg
     3481 tgcatgaacc aggtgttttg ttcggggctg cggtcatgac ccgtgtcgat cacgcggagg
     3541 cgtcctcgaa attcatcgag gtgaaggacc acgccgactt ccacgacaag cgcctgtggg
     3601 acctgcgcaa gaagcgcgac gtcgagagcg aggcgctgcc cgaatgggag gagttgcgct
     3661 cgctcgcctc ggcgatcaag gaacatacgc tcacgcacct ggccgactat ctcgaggagt
     3721 tcgagaagaa cgcggtcgcc aacggcatgg tcgtgcactg ggcccgagac gccgccgacc
     3781 acaaccagat cgtcttcgac atcctcgagt ctcacgatgc gacgacgctg gtcaagagca
     3841 agtcgatgct caccgacgaa tgcgagatgc ggccgttcct cgagaaccgc ggcatcgaga
     3901 tcgtcgagac cgacctcggc gagcgcatcc agcagctcga cga
//
LOCUS       DASVHM010000313         1963 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_600940, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000313 DASVHM010000000
VERSION     DASVHM010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_600940"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..599
                     /locus_tag="VF308_05900"
     CDS             <1..599
                     /locus_tag="VF308_05900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011805181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7436221.1"
                     /translation="WNADLEQPAAVAARLQSWLAAFDPAAVAAATLINNAAALTRVGP
                     LDGCEDAEISAALRVSLEAPLLLTAAFLRATRAWTVPRRILNISSGLGRRAMAGAAAY
                     CATKAGMDHYSRAVALDEAERPHGAKIVALAPGVIDTDMQVQLRAADPQGFPDKAIFV
                     GLKEGGQLTSSTDAAARVLAYLGRPDFGANPVADVRDA"
     gene            complement(619..1287)
                     /locus_tag="VF308_05905"
     CDS             complement(619..1287)
                     /locus_tag="VF308_05905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEX7436222.1"
                     /translation="MSTPAALSAPGWLEAEAGLLHARGHGAARRDSWPYTLKLAFSED
                     WGVRFGGDAWVRQSDESGQRLSGGGDSSVVLKRRFGIDETSAFGLEAGATLPTGRTGI
                     GSGKSDASINGIYSADLGEYHTDLNLVSTRVGHVDPGASRGQILWAASLSKSLTDRWG
                     VVGEFSGTHQRGVEGTAQFLVAASYNVSKSLTLDAGLARSIRSGVSDWSAFTGFTLLV
                     GRMF"
     gene            complement(1410..1963)
                     /locus_tag="VF308_05910"
                     /pseudo
     CDS             complement(1410..1963)
                     /locus_tag="VF308_05910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905843.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe dioxygenase family protein"
BASE COUNT          314 a          709 c          654 g          286 t
ORIGIN      
        1 agtggaacgc ggacctcgag caaccggcgg cggtcgcggc gcggctgcag tcctggctcg
       61 ccgcattcga tccggccgcg gtcgccgctg caacgctcat caacaacgcc gccgcgctga
      121 cgcgcgtggg tcccctcgac gggtgcgaag acgccgagat atccgccgcc ctgcgcgtca
      181 gcctggaggc tccgctgctg ctgaccgccg cgttcctgcg cgcgacgcgc gcgtggacag
      241 tgccgcgccg catcctcaac atttcgtccg gcctcggccg ccgcgcgatg gccggcgcgg
      301 ccgcgtactg tgccaccaag gccggcatgg atcactactc gcgcgcggtc gcgctcgacg
      361 aggccgagcg cccgcacggc gcgaaaatcg tcgcgctcgc gccgggcgtg atcgacaccg
      421 acatgcaggt ccagttgcgc gccgccgacc cgcaagggtt tcccgacaag gcgatattcg
      481 tcggcttgaa ggaaggcgga caactcacct cgagcacgga tgccgccgcg cgcgtgctcg
      541 cctacctcgg ccggcccgac ttcggcgcga acccggtcgc ggacgtgcgc gacgcgtgat
      601 gcgtccaaag gccagccgct agaacatgcg cccgaccaac agcgtgaatc ccgtgaacgc
      661 ggaccagtcg ctcacgcccg aacgaatgct gcgcgccagg ccggcgtcga gcgtcagcga
      721 cttcgatacg ttgtagctgg ccgcaacgag gaactgtgcc gtgccttcga cgccgcgctg
      781 gtgcgtgccc gaaaactcgc cgaccacgcc ccaacgatcg gtcaatgatt tcgaaagcga
      841 ggcggcccag aggatctggc cgcgactggc ccctgggtcc acgtgtccga cgcgcgtcga
      901 cacgaggttg aggtcggtgt ggtattcgcc gagatcggcg ctgtagatgc cattgatcga
      961 agcgtccgac ttgcccgaac cgatgccggt gcgaccggtc ggaagcgtcg ctcccgcctc
     1021 gagaccgaac gcggaagtct cgtcgatgcc gaagcggcgc ttcagcacga cgctgctgtc
     1081 gccaccgccg ctcaggcgct gacctgattc atcgctctgc cggacccagg cgtcaccgcc
     1141 gaagcgcacg ccccagtcct cggagaaggc cagcttgagc gtgtagggcc agctgtcgcg
     1201 ccgcgcggcg ccgtggccgc gcgcatgcag cagccccgcc tcggcctcga gccaccccgg
     1261 cgccgagagt gcagcaggcg tcgacacgct cggccggtag ggtatcaccg atggctcttc
     1321 ggacgaggcc tgcgcgaaag cgccagagct ccatggcgcc tgcgccacca gcaggaaagc
     1381 agcactccac accttccgat gacgtcgtgt caagactttc tcccctggat cggtgaaacg
     1441 gcacctgccg gcccctgaaa cccgcccgcc cgatacgtca gcaccagcgt atcgcgatgc
     1501 ccgttcgcct cgagcggctg gatcggcgtg ctctcatgga tcacgcgctg gtcgtcaagg
     1561 accagcgtgg accacggttc gagcatcgtg cgcgcagacc ggccggcccg tcggcctcga
     1621 agacgcgggt ctcgccgccc ttgatgccca tgcggtcgac gagaatcacg acgacgaagt
     1681 cgacgccgtc gcggtgcgca ccttcgggtg tcggccggcc gatgccgtcg gtggtgtcga
     1741 tgcggaactg gtgcgcttcc acgtaccagg gctgatcgcc tttgagtgtc gagcaaagcc
     1801 ggccgaaggc gccgagcagg cgcgaccaca ccggctgcgc ggcaacctgc ggctgcaccg
     1861 gctcgaacca gcgctcgagg ccgccgtgca gggcgttgta ttcgatcgac tgccagtggg
     1921 cgcgctgcgg tgcggcgcgc accgcgccgc tttcatcgat cac
//
LOCUS       DASVHM010000314         2266 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_528058, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000314 DASVHM010000000
VERSION     DASVHM010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_528058"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..650)
                     /locus_tag="VF308_05915"
     CDS             complement(<1..650)
                     /locus_tag="VF308_05915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436223.1"
                     /translation="MNSSRADSRGPSGKRKRRPGRVSFRSRVLPWSASSDDDARFRRI
                     AERVVISCAIFFILMPWLPVRKPDPTQGPVVSVPMAKLLLAQDKVPPPPPPKPKAKAD
                     LPKAPIEKPVALNNNKPDPIKPPARKPDAPAKVALNKEAPVPEARVPLPNKPPGEIDA
                     AKRKVAGIGLLAMNNDIQELHGAPMAVQLAPVKQGPGVGTGVGVGVGAGNEAGVPVR"
     gene            complement(686..1183)
                     /locus_tag="VF308_05920"
     CDS             complement(686..1183)
                     /locus_tag="VF308_05920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEX7436224.1"
                     /translation="MKPLSPLKKRAERRNRNQSMVDMNLVSLIDVFTILIFFLLSNSG
                     GVETLASPRAVKLPESMSQKAPKETLLVVVTASEILVGGKVVSLVKDAMTVDGDMIQP
                     LKAELDVEVSRQVIRKENEADSKRVTIMGDKDIPYRLLRKVMFTAARAGYSDVSFAVR
                     QRFEP"
     gene            complement(1191..1688)
                     /locus_tag="VF308_05925"
     CDS             complement(1191..1688)
                     /locus_tag="VF308_05925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEX7436225.1"
                     /translation="MPVRRLKKTSAHLEITAFINLIVVLVPFLLSVAVFTHLAVIDLS
                     LPAQSNEAVEKLDPNKLLKLEVVIRPESIEVGDRIGGLIQRIPNLATGADLKTLSALL
                     QQIKLKYPDATESTVMAEPNTSYDTLVQVMDAVRAGHQVQGARVVSTDYFPNISIGDA
                     PIRRQ"
     gene            complement(1733..>2266)
                     /locus_tag="VF308_05930"
     CDS             complement(1733..>2266)
                     /locus_tag="VF308_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEX7436226.1"
                     /translation="ARAQNRKVWAQVLPMLQKGQFRDVQSMTAQSDAAVGKIVSYGLT
                     RMQSPGRREDFDAAMEEGMMEIVPRLEKRTHYIATFANVITLVGLLGTIIGLIKGFTA
                     VAQVNPAEKAEMLSASISIAMNNTAFALMVAIPFLLIHSFLQAKTSEIVDGLEAAKMS
                     FLNLVQRLKLEHAAGKG"
BASE COUNT          329 a          753 c          765 g          419 t
ORIGIN      
        1 cgcaccggca cgccggcttc gttgccggcg ccgacgccga cgccgacgcc cgtgccgacg
       61 cccggcccct gcttcaccgg cgcgagctgg accgccatcg gcgcgccgtg cagttcctgg
      121 atgtcgttgt tcatcgcgag caggccgatg ccggcgacct tgcgcttggc cgcgtcgatc
      181 tcgcccggcg gcttgttcgg cagcggcacg cgagcttcgg gcaccggcgc ctccttgttg
      241 agcgcgacct tggcgggcgc gtcgggtttg cgcgccggcg gcttgatcgg gtcgggcttg
      301 ttgttgttga gcgcgaccgg cttttcgatc ggcgccttgg gcagatcggc cttcgccttc
      361 ggcttgggcg gcggcggcgg cggcaccttg tcctgcgcca gcagcagctt ggccatcggc
      421 accgagacca cgggcccctg ggtcgggtcg ggcttcctca ccggcagcca cggcatcagg
      481 atgaagaaga tcgcgcagct gatgacgacg cgctcggcga tgcgccggaa gcgcgcgtcg
      541 tcgtccgacg acgccgacca cggtaggacg cgcgagcgga acgagactcg cccgggcctt
      601 ctcttgcgct tgccgctcgg gccgcgagag tcggctcggc tgctgttcat ggacactcga
      661 ccggtttccg acacgcgcgc ggccctcacg gctcgaacct ctggcgcacc gcgaacgaga
      721 cgtcgctgta gccggcgcgc gccgccgtga acatcacctt gcgcagcagg cggtacggga
      781 tgtccttgtc gcccatgatc gtcacgcgct tgctgtcggc ctcgttctcc ttgcggatca
      841 cctggcgcga cacctcgacg tcgagctcgg ccttgagcgg ctggatcatg tcgccgtcga
      901 cggtcatcgc gtccttgacc agcgagacga ccttgccgcc gaccaggatc tcgctggcgg
      961 tgacgacgac gagcaaagtc tccttcggcg ccttctgcga catcgactcg ggcagcttga
     1021 ccgcgcgcgg gctggccagc gtctcgacgc cgccgctgtt ggaaagcagg aagaagatca
     1081 ggatcgtgaa gacgtcgatc agcgacacga ggttcatgtc gaccatcgac tggttgcggt
     1141 tgcggcgctc ggcgcgcttc ttcagcgggg ataagggctt catgtccgcg ctactgcctg
     1201 cggatcggcg cgtcgccgat cgagatgttg gggaagtagt cggtgctgac gacgcgcgcg
     1261 ccctgcacct ggtgtccggc gcgcaccgcg tccatcacct ggaccagcgt gtcgtacgag
     1321 gtgttcggct cggccatgac ggtcgactcg gtggcgtcgg ggtacttcag cttgatctgc
     1381 tgcagcaacg ccgaaagtgt cttcaggtcg gcgccggtgg ccaggttcgg aatgcgctgg
     1441 atcagtccgc cgatgcggtc gccgacctcg atcgattccg gccggatcac gacctcgagc
     1501 ttgagcagct tgttcgggtc gagcttttcc accgcctcgt tcgactgcgc cggcaggctg
     1561 agatcgatca ccgcgaggtg ggtgaacacc gccaccgaca gcaggaacgg caccagcacc
     1621 acgatcaggt tgatgaacgc ggtgatctcg aggtgagccg acgtcttctt cagacgacga
     1681 acaggcatgt cattcctccg ggcggttgcg atcgagcagg aaagtgctca gctcagccct
     1741 tgcccgccgc gtgctccagc ttcaggcgct ggaccaggtt caggaagctc atcttcgcgg
     1801 cctcgaggcc gtcgacgatc tcgctcgtct tggcctgaag gaacgaatgg atcagcagga
     1861 acgggatcgc gaccatgagc gcgaacgcgg tgttgttcat cgcgatcgag atcgaggccg
     1921 acagcatctc ggccttctcg gccgggttga cctgggcgac cgccgtgaag cccttgatca
     1981 ggccgatgat ggtgccgagc aggccgacca gcgtgatgac gttggcgaag gtcgcgatgt
     2041 agtgcgtccg cttctctagg cgcggcacga tttccatcat tccctcttcc atcgccgcgt
     2101 cgaagtcctc gcgccggccg gggctctgca tgcgggtcag gccgtagctg acgatcttgc
     2161 cgacggccgc gtcggattgc gcggtcatgc tctggacgtc gcggaactgg cccttctgca
     2221 gcatcggcag cacctgcgcc cagaccttcc tgttctgcgc ccgcgc
//
LOCUS       DASVHM010000315         1755 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1249664, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000315 DASVHM010000000
VERSION     DASVHM010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1755
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1249664"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1315
                     /locus_tag="VF308_05935"
     CDS             <1..1315
                     /locus_tag="VF308_05935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEX7436227.1"
                     /translation="ALIDPAGLMWSVVTEYLQKAGLMPYLEKLGFDLAAYGCTTCIGN
                     AGDLTPEINEVITKNDLVCAAVLSGNRNFEARIHPNLKANFLASPPLVVAYAIAGTVL
                     RDLMTEPLGKGTGGRDVYLGDVWPSSHEVHELMKYAMNGKAYRQNYEKVASTPGKLWE
                     KIKGVTGQVYNWPTSTYIAKPPFFDTFTMLPGAAGTGVKGARAMALFGDSITTDHISP
                     AGSIKEASPAGAWLKEHGVSKADFNSYGSRRGNHEVMMRGTFANVRIKNLMIPPGPDG
                     SREEGGVTLFQPSGAKMFIYDAAMKYIAEGTPTVIFGGEEYGTGSSRDWAAKGTLLLG
                     VKAVIARSFERIHRSNLVGMGVLPLQFKSNDSWQSLGIRGDERFDVELAHDIRPQQDA
                     TLVITGGDGRPRRVPLVLRIDTAIEVDYYKHGGILPFVLRQLLAA"
BASE COUNT          339 a          595 c          543 g          278 t
ORIGIN      
        1 cgccttgatc gacccggccg gactgatgtg gtcggtggtc accgagtacc tgcagaaggc
       61 gggcctcatg ccctacctcg aaaagctcgg cttcgacctc gccgcctacg gctgcaccac
      121 ctgcatcggc aacgccggcg acctcacgcc cgagatcaac gaggtcatca cgaaaaacga
      181 cctggtctgc gccgcggtgc tttccggcaa ccgcaatttc gaggcgcgga tccatccgaa
      241 cctgaaagcg aacttcctcg ccagcccgcc gctcgtcgtc gcctatgcca tcgccggcac
      301 cgtgctgcgc gatctgatga ccgagccgct cggcaagggc acgggcgggc gcgacgtgta
      361 ccttggcgac gtctggccga gcagccacga ggtccacgag ctgatgaagt acgcgatgaa
      421 cggcaaggcc tatcgccaga actacgagaa agtcgcgagc acgccgggca agctctggga
      481 aaagatcaag ggcgtgaccg ggcaggtcta caactggccg acctcgacct acatcgccaa
      541 gccgccgttc ttcgacacct tcacgatgct gcccggcgcc gccggcacgg gcgtgaaggg
      601 cgcgcgggcg atggcgctct tcggcgactc gatcacgacc gaccacatct cgccggccgg
      661 atcgatcaag gaggcgtcgc ccgccggcgc gtggctcaag gagcacggcg tctcgaaagc
      721 cgacttcaac tcctacggct cgcgccgcgg caaccacgag gtgatgatgc gcggcacgtt
      781 cgccaatgtg cgcatcaaga acctgatgat cccgcccgga cccgacggct cgcgcgaaga
      841 gggcggcgtc acgctgttcc agccttctgg cgcaaagatg ttcatctacg acgcggcgat
      901 gaagtacatc gccgagggca cgccgacggt catcttcggc ggcgaggaat acggcaccgg
      961 ctcgagccgc gactgggccg ccaagggcac gctgctgctc ggcgtgaagg ccgtgatcgc
     1021 gcgcagcttc gagcgcatcc accgcagcaa cctggtcggc atgggcgtgc tgccgctgca
     1081 gttcaagagc aacgattcat ggcagtcgct cggcatccgc ggcgacgagc gtttcgacgt
     1141 cgagctggcc cacgacatcc ggccgcagca ggacgcgacg ctggtcatca ccggcggcga
     1201 cggacggcca cgccgcgtgc cgctggtgct gcggatcgac accgccatcg aggtcgacta
     1261 ctacaagcac ggcggcatcc tgccgttcgt gctgaggcag ctgctcgcgg cttagagctc
     1321 cttgcgagag cccgtcggtc gcgagagccc gccggtcgcg gccggcagcc gcgtaacttt
     1381 cttctgctgg cccaccaaag aagagggccc aacacgatcc gcgagtcacg cttcgacacg
     1441 aaattcggtc gttgaagagc ctctctaacc ggtacgccaa gcgtccaagt ccaaccctca
     1501 aggacttggc gcggcactct cgctgcgact cgacttggac gccatttctg tcgagccaaa
     1561 ccactcttca acaaccgaag ctttctggcc gaagcatgaa gaccaagtcg tgttaggccc
     1621 tttgctttgg ttggcggtct caagaccgct tactttcatt tgagccagca aatgaaagtg
     1681 actcggcatg ccgggccgag tcccggcggg ctgctgcaag cgtcagacga ccatgcagaa
     1741 gactcacccg aatcg
//
LOCUS       DASVHM010000316         6696 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1033115, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000316 DASVHM010000000
VERSION     DASVHM010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6696
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1033115"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1716
                     /locus_tag="VF308_05940"
     CDS             <1..1716
                     /locus_tag="VF308_05940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008346433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEX7436228.1"
                     /translation="GFGIVYLAYDHSLQRHVAVKEYMPSSMASRVAGSATIVVKSERH
                     QETFKAGLKSFVNEARLLARFDHPALVKVYRFWEENGTAYMVMPYYEGPTLKSALAAR
                     AQAPDEAALRAWLRPLLDALGVMHAAQCYHRDIAPDNILLTPTGPLLLDFGAARRVIG
                     DMTHALTVVLKPGYAPIEQYGDVASMMQGAWTDLYALACVVYFAITGKVPMSSVERLM
                     DDRLERLSDVAAGRYSPGFLRAIDAALAVRPQDRPQTDAQFRALLGEPEGAPAAPAFR
                     PAPAPAPVPAPAADDVPTRIVTAPRTKAPSPATPRAPEPAHEPTAIERRATQPGALST
                     VPGALPSEPAGLQTAPGAWRPELARGDDAPAAVPSVRPAARVPAAAKPASSRTPLVVA
                     GAVVCLIALAAAGLRVLEQRSATGPQASELTSTPPAAPSASATAPANAVPVPTAVPAA
                     LPAALPPVVEAPATIQAPNTASGQASSPSSTLPPPTSPASPEAPQAKPEAAASPTTEP
                     PPEPSPTQTRTKRDAPVRTEPVPRPAAPTHGAGVQARCSDILQKASLEPLSGEEAAFL
                     KRECR"
     gene            1713..2927
                     /locus_tag="VF308_05945"
     CDS             1713..2927
                     /locus_tag="VF308_05945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEX7436229.1"
                     /translation="MKPITLHLRTGLCAWLAGFISLLVAACAAPPQATNLSNELPFEE
                     AVAKATDGLVAQTQTLPAFLAKVESKLNKRGIVLDPMLDSTTGQQTAATVLLENRVTE
                     RMTTKYDQFEVLPFRAANLSRAQYLLTGTMTRAATERSKKGLQINLALTDLKSGNVVA
                     QASAVARDEGLDSTPLAYYRDSPVLVKDKVIEGYVTTSATPPGRRADAFYMERIAAAT
                     LINEATILYNQERYQDALGQYRSALATPAGEQLRVLNGIYLTNAKLGRNVEAEQAFGR
                     VVAFGIAYNQLGVKFLFNPGSTEFWSDPKVSGSYAMWLRQIAREGTAAKVCMNIVGHT
                     SRTGSEQANDALSLQRATFIRQRLSAEAAPLGARTKVSGMGFRENIVGSGSDNAVDAL
                     DRRVEFKIVPCG"
     gene            complement(2959..3333)
                     /locus_tag="VF308_05950"
     CDS             complement(2959..3333)
                     /locus_tag="VF308_05950"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7436230.1"
                     /translation="MWRNPESNKDETHVGGEPCGFIIELENGLKLWHMGDTGLFGDMR
                     MLGELYKPDLLLIPIGGGQFVMNPGDAAIATRDLIRPKVTMPMHYGTNAALVGTPEEY
                     IKALGITATKVAVMKPGDTLEF"
     gene            complement(3258..3575)
                     /locus_tag="VF308_05955"
     CDS             complement(3258..3575)
                     /locus_tag="VF308_05955"
                     /inference="COORDINATES: protein motif:HMM:NF024874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7436231.1"
                     /translation="MPMSAEAQAGKVQVQWLGQSAFKIITSVGGKGIVIEYLNANPKT
                     PEAYRKLEALGKVDLILVTHGHLDHFLDAPALAKMSSCGAIPNRTRTKPMSAASRAGS
                     SSS"
     gene            complement(3713..4438)
                     /locus_tag="VF308_05960"
     CDS             complement(3713..4438)
                     /locus_tag="VF308_05960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEX7436232.1"
                     /translation="MTAGGTTLNLLCAGAAQGLVTALEERFAAATGARICGRFGAVGA
                     MKEALLAGAPCDVMIVTAALIDALAASGELDGASRAALGRVRTGVAVRASDPAPAIDT
                     PDALRSALLAADRIYFPDPERATAGIHFAAVMRKLGIHDALAARFATFANGATTMREL
                     AHATSASPLGCTQVTEINFTAGVRLVGALPPEFELSTVYTAAVSAHASDSALAARFVA
                     LVSGEDSRELRLEGGFELEPPTR"
     gene            complement(4435..5433)
                     /locus_tag="VF308_05965"
     CDS             complement(4435..5433)
                     /locus_tag="VF308_05965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7436233.1"
                     /translation="MAIPLVARSPIGTALRLLACASVCLLPLRTTAQDYPTRTVRIIV
                     PFAAGGPADVYARFIGQRLQEVLGQAFIVDDRPGAGSIIGTDAVAKSTPDGYTLLLMS
                     NTHTVNESLIPTKPFQLMRDFVAVAPINYSDLVLVGKAGLPANTLGELIRQAKARPGA
                     LSYASSGPGTPYHMAGELFKAMAGISMVHIPYRGSSGARSDVLGGQVDLMFDAIPTMS
                     EHIRAGKVKAYGTTGKARSPVLPAVPTMAEAGVPGYEAVIWLGLMAPKGTPPAIVNRL
                     NAEIGKIVSAPDVVRAWAAQGATPMTMGVDEFTRYLNQDIAKWARIVKISGAKPDQ"
     gene            5600..6595
                     /locus_tag="VF308_05970"
     CDS             5600..6595
                     /locus_tag="VF308_05970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013743353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7436234.1"
                     /translation="MISRRTWSAHGTARLAAVAIALALPAATHAQSTWPDKPITMIVP
                     FPPGGVADTVARPVADALARELKQPIVIENKPGAGGALGMGLAARAAADGYTILMTLS
                     SISILPEADKLLGRKPAYQLNQFKPIARFTADPTVFVVRADAPWHTLKEFVDDARKKP
                     GAYNYGSSGNYGTMHVPMEMLKAEAGFRMTHIPFTGAGPAVIALLGGQVDAIASGPAT
                     VVQQINAGKLRALAHWGDRPLAALPGVPSLKQLGYPAQFAQWSALFVPSATPDDIVQR
                     LRAAAQKVAADPAVQQTIARAGSPLDYLDAPAFQTYWDADAAVMTQAVRKIGKVE"
BASE COUNT         1093 a         2440 c         2192 g          971 t
ORIGIN      
        1 ggcttcggca tcgtctacct cgcctacgac cactcgctgc agcgccacgt cgcggtcaag
       61 gagtacatgc cgtcgtcgat ggcgtcgcgt gtcgccggct cggcaaccat cgtcgtcaag
      121 tcggaacggc accaggaaac ctttaaggcc ggcttgaaaa gcttcgtcaa cgaggcacgc
      181 cttctcgccc gcttcgacca cccggcactc gtcaaggtct accgcttctg ggaagagaac
      241 ggcaccgcct acatggtgat gccgtactac gaggggccga cgctcaagag cgcgctcgcc
      301 gcgcgcgccc aggcgcccga cgaggcggcg ctgcgcgcct ggctgcgccc gctcctcgat
      361 gcgctcggcg tgatgcacgc ggcccagtgc taccaccgcg acatcgcgcc ggacaacatc
      421 ctgctcaccc ccaccggccc gttgctgctc gacttcggcg cggcgcggcg cgtgatcggc
      481 gacatgacgc acgcgctcac cgtcgtgctc aagcccggct atgcgccgat cgaacaatac
      541 ggcgacgtcg cgagcatgat gcagggcgca tggaccgacc tctatgcgct cgcctgcgtg
      601 gtctattttg cgatcaccgg caaggtgccg atgtcgtcgg tcgagcgact gatggacgac
      661 cggctcgaac gcctgagcga cgtcgcggct ggccgctaca gtcccggctt cctgcgcgcg
      721 atcgacgcgg ccctcgcggt ccggccgcag gaccggccgc agaccgacgc ccaatttcgc
      781 gccttgctcg gcgagcccga aggcgcgccg gccgcgcctg cgttccggcc cgcgcccgca
      841 ccagcgcccg tcccagcgcc agcagcggac gatgtgccca cgcgcatcgt caccgcgccg
      901 cgcaccaagg cgccgagccc cgccacgccc cgggcacccg aaccggccca tgagccgacg
      961 gcgatcgaac ggcgcgccac ccaacccggc gcactgtcca cggtccccgg ggcgctgccg
     1021 agcgaaccgg ccgggttgca aaccgcgccc ggagcatggc gcccggagtt ggctcgtggc
     1081 gacgacgcgc ctgcggcggt gccttccgtg cggccggccg cgcgcgttcc agccgctgcc
     1141 aagccagcct cgagccgcac accgctcgtc gtcgccggcg ctgtcgtctg cctgatcgcg
     1201 ctggccgcgg ctggcctgcg cgttctcgag caacgatcgg cgaccgggcc gcaagcgtcc
     1261 gagctgacat cgacgccccc ggcagcaccg tccgcctccg ccacggcccc tgcgaatgcg
     1321 gtacctgtgc ccacagccgt accggcggcg ctccccgccg cactgccgcc ggtcgtcgaa
     1381 gcgccagcga cgatccaggc accgaacacg gcgtccggcc aggcgtcgag cccatcgtcc
     1441 acgctgccgc cgccgacatc gccggcatcg cccgaggctc cgcaggccaa gcccgaggcc
     1501 gccgcctcgc cgaccacaga gcccccgccc gagccgagtc ccacgcagac ccgcaccaag
     1561 cgggacgcgc cagtgcgcac cgagcccgtg ccccgtcccg ctgcgcccac gcacggcgcc
     1621 ggcgtccagg cgcgttgcag tgatattctg caaaaggcct cgctcgaacc cctgagtggc
     1681 gaagaggctg catttttgaa gagggaatgt cgatgaagcc aatcaccctg catctgcgaa
     1741 ccggcctttg cgcatggctc gccggattca tcagcttgct cgtcgccgcc tgtgccgcgc
     1801 caccgcaggc caccaacctc agcaacgagc tgccgttcga ggaagcggtc gccaaggcca
     1861 ccgatggcct cgtagcgcag acccagacgc tgcccgcctt tctcgccaag gtcgaatcga
     1921 aactcaacaa gcgcggcatc gtgctcgacc cgatgctcga cagcacgacc ggccagcaga
     1981 ccgcggcgac ggtgctgctc gaaaaccgcg tgactgagcg catgaccacc aagtacgacc
     2041 agttcgaggt gctgccgttt cgcgccgcca acctgagccg cgcgcaatac ctgctgaccg
     2101 ggacgatgac gcgcgccgcg accgagcgct cgaagaaggg cctgcagatc aacctcgcgc
     2161 tgaccgacct gaagagcggc aatgtcgtcg cccaggcctc ggccgtggcg cgcgacgaag
     2221 gcctcgacag caccccgctg gcgtactacc gcgacagccc ggtgctggtg aaagacaagg
     2281 tgatcgaagg ctatgtgacg acctcggcga caccgccggg ccgacgcgcc gacgcgttct
     2341 acatggagcg catcgccgcc gcgaccttga tcaacgaggc gacgatcctc tacaaccagg
     2401 agcgctacca agacgcactc ggccagtacc gcagcgcgct cgcgacgcct gccggcgagc
     2461 agcttcgcgt gctcaacggc atttacctca ccaacgccaa actcggccgc aacgtcgagg
     2521 ccgagcaggc gttcggacgg gtcgtcgcat tcggcatcgc ctacaaccag ctcggcgtga
     2581 agttcctgtt caatcccggc agcaccgagt tctggtccga tccgaaggtg agcggctcct
     2641 acgcgatgtg gctgcgccag attgcgcgcg aaggcacggc ggcgaaggtc tgcatgaaca
     2701 tcgtcgggca caccagccgg accggttcgg agcaggccaa cgacgcgctg tcgctgcaac
     2761 gcgcgacctt catccggcaa cgcctctcgg ccgaagccgc gccgctcggc gcgcgcacca
     2821 aggtgagcgg catgggattt cgcgagaaca tcgtcggcag cggcagcgac aacgccgtcg
     2881 atgcgctcga ccgccgcgtc gagttcaaga tcgttccctg cggctgagcg ccgccgacgc
     2941 aggcgctcac gtccggcctc agaactcgag cgtgtcgccc ggcttcatca ccgcgacctt
     3001 ggtcgcggtg atgccgagcg ccttgatgta ttcctcgggc gtgccgacca gggccgcgtt
     3061 ggtgccgtag tgcatcggca tcgtaacctt cgggcggatc aggtcgcgcg tggcgatcgc
     3121 cgcatcgccc gggttcatca cgaactgtcc gccgccgatc gggattagca gcagatcggg
     3181 cttgtacagc tcgcccagca tgcgcatgtc gccgaagagc ccggtgtcgc ccatgtgcca
     3241 gagcttgagg ccattctcta actcgatgat gaacccgcac ggctcgccgc cgacatgggt
     3301 ttcgtccttg ttcgattcgg gattgcgcca cacgagctca tcttggcgag cgccggcgcg
     3361 tcgagaaagt gatcgaggtg gccatgcgtg acgaggatca ggtcgacctt gccgagcgcc
     3421 tcgagcttgc gataggcctc cggcgtcttc ggattcgcat tcaggtactc gatcacgatc
     3481 cccttgccgc cgaccgacgt gatgatcttg aacgccgact ggccgagcca ctgcacctgc
     3541 actttgccgg cctgggcctc ggccgacatc ggcatctgag ccgcgaccag gagtgccgcc
     3601 agcgcgaatg cgcaggcgaa ctttcgtcgc ggccgtaaaa ccgcttgcct gttggaagaa
     3661 cagagtcttt gcagaaagtc cctgtcgtct ccgtgtgagt ttcagttcgg gatcagcggg
     3721 tcggcggctc cagttcgaag ccgccctcga gacgcaattc acgcgaatct tcacccgaca
     3781 ccagcgcgac gaagcgcgcg gccagcgccg aatcggacgc atgcgcagaa acggccgcgg
     3841 tgtagaccgt gctgagttcg aactccggcg ggagcgctcc gaccaagcgc acgccggccg
     3901 tgaagttgat ctcggtgacc tgggtgcagc cgagcggcga tgcgctcgtc gcgtgggcga
     3961 gttcgcgcat cgtcgtcgca ccgttcgcaa acgtcgcgaa gcgcgcagcc agggcatcgt
     4021 ggatccccag cttgcgcatc acggccgcga aatggatgcc ggccgtcgcc cgctcggggt
     4081 cgggaaagta gatgcgatcg gccgcgagca acgccgagcg cagcgcgtcc ggcgtatcga
     4141 tcgcgggcgc cgggtcgctc gcgcgcaccg ccacgccggt gcgcacgcgg ccgagcgcgg
     4201 cgcgcgatgc gccgtcgagt tcgccgctcg ccgccagcgc gtcgatcagc gccgcggtga
     4261 cgatcatcac gtcgcatggc gcgccggcga ggagcgcctc cttcatcgcg ccgaccgcac
     4321 cgaagcggcc gcagatgcgc gcgccggtcg cggcggcgaa gcgctcctcg agcgccgtca
     4381 cgagtccctg cgccgcgccg gcgcagagaa gattcagggt cgtgccgccg gccgtcattg
     4441 gtcgggtttc gcaccggaga tcttgacgat gcgcgcccac ttcgcgatgt cctggttcag
     4501 gtagcgcgtg aactcgtcga cgcccatcgt catcggcgtc gccccctgag ccgcccaggc
     4561 tcgcaccacg tcgggcgccg agacgatctt gccgatctcg gcattgaggc ggttgacgat
     4621 cgccggcggc gtgcccttgg gcgccatcag gccgagccag atcaccgcct cgtagccggg
     4681 cacgcccgct tcggccatgg tcggcaccgc gggcagcacc ggcgagcgtg ccttgccggt
     4741 cgtgccgtat gccttgacct tgccggcgcg gatgtgttcg gacatcgtcg ggatcgcatc
     4801 gaacatcaga tcgacctggc cgcccagcac gtcgctgcgc gcgcccgatg agccgcgata
     4861 cggaatgtgg accatcgaga tgccggccat cgccttgaac agttcgccgg ccatgtgata
     4921 cggcgtgccc gggcccgacg acgcgtacga gagcgcgccg ggccgcgcct tggcctggcg
     4981 gatcagctcg ccgagcgtgt tggccgggag cccggccttg ccgaccagca ccaggtcgga
     5041 gtagttgatc ggcgccaccg cgacgaaatc gcgcatcagc tggaacggct tggtcggaat
     5101 cagcgattcg ttgaccgtgt gcgtgttcga catcagcagc agcgtgtagc catccggcgt
     5161 gctcttcgcg accgcatcgg tgccgatgat ggaaccggcc cccggccggt cgtcgacgat
     5221 gaaggcctga cccaggacct cctgcaggcg ctggccgatg aagcgcgcat agacatcggc
     5281 cgggccgccg gcggcgaacg ggacgatgat gcgcaccgtc cgcgtcgggt agtcctgcgc
     5341 cgtcgtccgc agcggcaaga ggcacacgct cgcgcaggcc aggagtcgca gggcagtgcc
     5401 gatcggggat cgggccacca gggggatcgc catgcacgtc tccatgaggt agggcgcatg
     5461 gtatcgccgc gaggcgcaaa gaaccgcccg tgaaagcacc cccatcgggc ccgctcgggt
     5521 ctcctcctta gaatcgaccg agcccctcgc gggcctcggc cctgcgcagc gccgcacctc
     5581 gacaccggag acgaaagaca tgatttcacg ccgcacctgg agtgcgcacg ggacggcgcg
     5641 gctcgccgct gtcgcgatcg cgctcgcgct ccccgcggcc acgcacgccc agtcgacctg
     5701 gcccgacaag ccgatcacga tgatcgtgcc gttcccgccc ggcggtgtcg ccgacacggt
     5761 ggcccggccg gtggccgacg cgctcgcccg cgaattgaag cagccgatcg tgatcgagaa
     5821 caagcccggc gcgggtggcg cgctcggcat gggcttggcg gcgcgcgccg cggccgacgg
     5881 ctacacgatc ctgatgacgc tgtcgtcgat ctcgatcctg cccgaagccg acaagctcct
     5941 cggcaggaag ccggcctacc agctgaacca gttcaagccg atcgcgcgtt tcaccgccga
     6001 cccgaccgtt ttcgtggtcc gcgccgatgc gccctggcac acgctgaagg agttcgtcga
     6061 cgatgcgcgc aagaagcccg gcgcctacaa ctacggcagc tccggcaact acggcacgat
     6121 gcacgtgccg atggaaatgc tcaaggccga ggccggcttt cggatgaccc acattccgtt
     6181 caccggagcc ggcccggcgg tcatcgcact gctcggcggc caggtcgacg cgatcgcgag
     6241 cggcccggcg accgtggtgc agcagatcaa tgccggcaag ctgcgcgcgc tcgcgcactg
     6301 gggcgaccgg cctcttgccg cgctgccggg tgtgccgagc ctgaagcagc tcggctatcc
     6361 cgcgcagttc gcgcaatggt cggcactctt cgtgccgtcg gcaacgcccg acgacatcgt
     6421 ccaacggctg cgcgcggcgg cacagaaggt cgcggccgac ccggcggtgc agcaaacgat
     6481 cgcccgtgcc ggcagcccgc tcgactacct cgacgcgccg gcgttccaga cctattggga
     6541 cgccgacgcc gccgtgatga cgcaggcggt gcgcaagatc ggcaaggtcg agtagcgtcg
     6601 ccccgggcga atgcgcctat attgccgctc atggcccgaa ccggcacccc gcagaggcgc
     6661 acgccatgaa cccgctgccc gacggcttca tcgtcg
//
LOCUS       DASVHM010000317         2128 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1249761, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000317 DASVHM010000000
VERSION     DASVHM010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1249761"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..812
                     /gene="cbbX"
                     /locus_tag="VF308_05975"
     CDS             <1..812
                     /gene="cbbX"
                     /locus_tag="VF308_05975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CbbX protein"
                     /protein_id="HEX7436235.1"
                     /translation="LIGLAPVKSRIRDIAALLLIDKLRAEQGLQSQPPSLHMCFTGNP
                     GTGKTTVAMRMAEVLKQLGYVRKGHLVAVTRDDLVGQFIGHTAPKTKEVVKKAMGGVL
                     FIDEAYYLYKPENERDYGQESIEILLQAMENHRDDLVVILAGYKDRMDAFFGSNPGMA
                     SRIAHHIDFPDYSEAELMQIAQLMLTQLNYRFDDSAEQAFARYVSLRRQQPHFANARS
                     IRNALDRIRLRHATRLFGAGGALTRDQLCTLQAEDILASRVFGLGVVSKGE"
     gene            814..1620
                     /locus_tag="VF308_05980"
     CDS             814..1620
                     /locus_tag="VF308_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEX7436236.1"
                     /translation="MSIEALIFDVDGTMADTEEAHRTAFNLAFERFRLGWKWSRSEYR
                     ELLRTTGGKERLAAYIAELSLSPAERKRCTELLPEIHAEKTRFYSSAVSDGAVPLRDG
                     VARLLDEALTAGCRLAIASTTTAVNVDALLQSTLGRRGLEMFSVIACGDQARAKKPAP
                     DIYRLALRHLGLEAGRALAFEDSANGLRAAVAAGLWTVVTPTFWTEGSDFGAAGLVLP
                     RLGDPAAPLAGEPGGQLRTAAWLTFGELLEQAEPPRPLNSVSALYQGFHR"
     gene            1657..>2128
                     /locus_tag="VF308_05985"
     CDS             1657..>2128
                     /locus_tag="VF308_05985"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEX7436237.1"
                     /translation="MPTGGRSTLTQFLIEERRRAPGATGDLNGLITAVSLACKAISRK
                     VAYGGLAGVLGSAGTGNVQGEEQQTLDVLSNQMFLRANEWGGHVAGMVSEELEQAYTL
                     PPQYPRGKYLLLFDPLDGSSNVDVNVTVGSIFSIIRAVTAGQDARPQDFLQPGTE"
BASE COUNT          366 a          744 c          698 g          320 t
ORIGIN      
        1 agctgatcgg cctcgcgccg gtgaagagcc gtatccgcga catcgccgcg ctgctgctga
       61 tcgacaagct gcgcgccgag cagggcctgc aatcgcagcc gccgtcgctg cacatgtgct
      121 tcaccggcaa ccccggcacc ggcaagacca ccgtcgcgat gcgcatggcc gaggtcctca
      181 agcagctcgg ctacgtgcgc aagggccacc tcgtcgcggt gacccgcgac gacctcgtcg
      241 gccagttcat cggccacacc gcgcccaaga ccaaggaggt cgtgaagaag gcgatgggcg
      301 gcgtgctctt catcgacgag gcctactacc tctacaaacc cgagaacgaa cgcgactacg
      361 gccaggaatc gatcgagatc ctgctccagg cgatggagaa ccaccgcgac gacctggtcg
      421 tgatcctcgc cggctacaag gaccgcatgg acgccttctt cggcagcaac ccgggcatgg
      481 cctcgcgcat cgcgcaccac atcgacttcc ccgactacag cgaagccgag ctgatgcaga
      541 tcgcgcagct gatgctcacg cagctgaact accgcttcga cgactcggcc gagcaggcct
      601 tcgcgcgcta cgtgagcctg cgtcggcagc agccgcactt cgcgaacgcg cgctcgatcc
      661 gcaacgcgct cgaccgcatc cgcctgcgcc acgccacacg cctgttcggc gccggcggcg
      721 ccttgacgcg cgatcagcta tgcacgctgc aggccgagga catcctggcc agccgcgtgt
      781 tcggcctcgg cgttgtttcg aaaggggaat gacatgagca tcgaagccct gatcttcgac
      841 gtcgacggca cgatggccga caccgaggaa gcgcatcgca ccgcgttcaa cctggcgttc
      901 gaacggtttc gcctcggctg gaagtggagc cgcagcgaat accgcgagct gctcaggacg
      961 acgggcggca aggagcgtct cgctgcctac atcgccgaac tttccttgag tcccgccgag
     1021 cgcaagcgct gcaccgagct gctgcccgag attcacgccg agaagacccg gttctacagc
     1081 tcggcggtca gcgacggtgc ggtgccgctt cgcgacggcg tggcacggct gctcgacgag
     1141 gcattgacgg cgggatgtcg cctggcgatt gcgagcacca ccaccgccgt caacgtcgat
     1201 gccttgctgc aatccacgct gggtcgccgc gggctggaga tgttcagcgt catcgcctgc
     1261 ggcgaccagg cgcgcgccaa gaagccggcg cccgacatct atcggctcgc cttgcggcac
     1321 ctgggtctcg aagcgggtcg ggcgttggcc ttcgaggact cggccaacgg cctgcgcgcc
     1381 gcagtggcgg ccggcctgtg gaccgtggtc acgccgacct tctggaccga gggcagcgat
     1441 ttcggcgcgg ccggactcgt gctgccccgc ctgggcgacc cggcggctcc gctcgcaggc
     1501 gaacccggcg ggcagctgcg gacggcggcc tggctcacgt tcggcgagct gctggaacag
     1561 gccgagccgc cgcgtccgtt gaactcggtg agcgccctct atcaaggatt tcaccgatga
     1621 ccgccacgca ccgaatccag ccctgaggag accggcatgc ccaccggagg aagatcgaca
     1681 ctcacccagt tcctgatcga ggagcggcgc cgtgcccccg gtgccaccgg tgaccttaac
     1741 gggctgatca ccgccgtctc gctggcctgc aaggcgatct cgcgcaaggt ggcctacggc
     1801 ggcctggcag gggtgctggg gagtgccggc accggcaacg tccagggcga ggagcagcag
     1861 acgctcgacg tcctgagcaa ccagatgttc ctgcgcgcca acgaatgggg cgggcatgtg
     1921 gccggcatgg tctcagagga gttggaacag gcctacacgc tgccgcccca gtacccgcgc
     1981 ggcaagtacc tgctgctgtt cgatccgctc gatggttcgt cgaacgtcga tgtgaacgtc
     2041 accgtgggca gcatcttctc gatcattcgc gcggtgacgg ccgggcagga tgcccggccg
     2101 caggacttcc tgcagcccgg caccgagc
//
LOCUS       DASVHM010000318         2793 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1106108, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000318 DASVHM010000000
VERSION     DASVHM010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1106108"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..294
                     /locus_tag="VF308_05990"
     CDS             <1..294
                     /locus_tag="VF308_05990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018309157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436238.1"
                     /translation="APPDFFTAGGMSAAIAIVEALKKTGGDTGTEKLIKTMEGMSFES
                     PKGKMTFRKEDHQAMQSMYHTRIKNDPAFAWGVPELVHEIKPEEMDIPIRNKR"
     gene            323..1072
                     /locus_tag="VF308_05995"
     CDS             323..1072
                     /locus_tag="VF308_05995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007856843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436239.1"
                     /translation="MLETRELTIRFGGHVAVDHVSCAFAPGTLTAIVGPNGAGKTTYF
                     NLISGQLQASEGSVWLGGTDITGETVSARTHRGLGRAFQLTQLFPNLSVLENVRLAVQ
                     SRRHEGLSLFSVWLDGRATLARARELVDRVRLGDRADARASSLPHGDQRKLEVAMLMA
                     LDPGVYMFDEPTAGMSVDEVPVILDLIRSLKAEADKTILLVEHKMDVVRELADRIIVL
                     HNGQLVADGEPAEVIASPVVREAYLGVEVGK"
     gene            1069..1842
                     /locus_tag="VF308_06000"
     CDS             1069..1842
                     /locus_tag="VF308_06000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009518322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436240.1"
                     /translation="MSGPLLQLEGVHTHIGAYHILHGVDFEVPAGQVTMLLGRNGAGK
                     TTTLRTIMGLWAASQGTVRFDGRQIGGPGAAAGDPARGQRGTPEIAQLGIAYVPENMG
                     IFADLSVAENMLLAARGARTLDRLDTARLEWLFGLFPALKKFWLYPAGKLSGGQKQML
                     AIARAMVEPRRLLLIDEPSKGLAPAIVQNLISALRELKRTETTVLLVEQNFAMARALG
                     DRVAVMDDGRVVHRGPMAELAGDEGLQHRLLGLSLAAHQ"
     gene            1863..>2793
                     /locus_tag="VF308_06005"
     CDS             1863..>2793
                     /locus_tag="VF308_06005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010810487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436241.1"
                     /translation="MTSLATPAAPAPTDAIPKTRFDARPLVLMAVLALAAWPLVGSSS
                     TWLTLTVAGLAMGMIIFITASGLTLVFGLMDVLNFGHSVFIALGAFIAASVFGALTGW
                     TSAASLGPNLAAVFVAMLAAMVLAGIVGLGFERVIVRPVYGQHLKQILVTIGGAIIGE
                     ELIKVVWGPAQIPLPPPEALRGSILIGDASVEKFRLVAVAVGLVVLAALLYTLDRTKV
                     GLLIRAGVQDREMVESLGYRIRRLFVGVFAMGSALAGLGGSLWGMNQQIVSPQIGAQV
                     NVLLFIVIIIGGLGSTLGCLVGALAVGLLTNYVG"
BASE COUNT          415 a          964 c          971 g          443 t
ORIGIN      
        1 gccccgcccg acttcttcac cgccggcggc atgagtgcgg cgatcgcgat cgtcgaagcg
       61 ctgaagaaga ccggcggcga caccggcacc gagaagctga tcaagacgat ggaaggcatg
      121 agcttcgaat cgccgaaggg caagatgacc ttccgcaagg aggatcacca ggcgatgcag
      181 tcgatgtacc acacgcgcat caagaacgac ccggcgttcg cctggggcgt gcccgagttg
      241 gtccacgaga tcaagccgga agagatggac attccgatca ggaacaagcg ctgaccggcg
      301 gcccggcgcg catggctctg ccgtgcttga aacccgcgag ctcacgattc ggttcggcgg
      361 ccacgtggcc gtcgatcacg tctcgtgcgc gttcgcgccg ggcacgctga ccgcgatcgt
      421 cgggccgaac ggcgccggca agacgaccta cttcaatctc atctcgggcc agctgcaagc
      481 gagcgagggc tcggtctggc tgggcggcac cgacatcacc ggcgagacag tctcggcgcg
      541 cacgcatcgc ggcctcggcc gcgcgttcca gctgacccag ctgtttccga acctgagcgt
      601 gctcgagaac gtgcgcctgg cggtgcagtc gcgacgccat gaagggttga gcctcttctc
      661 ggtgtggctg gatggtcgtg cgaccctcgc ccgcgcccgc gagctggtcg atcgcgtccg
      721 tctcggcgac cgcgccgatg cacgcgcgag cagcctgccg cacggcgacc agcgcaagct
      781 cgaggtcgcg atgctgatgg ccctcgatcc gggcgtctac atgttcgacg agccgaccgc
      841 gggcatgagc gtcgacgagg tgccggtgat cctcgacctg atccgcagcc tcaaggccga
      901 ggccgacaag acgatcctgc tggtcgagca caagatggat gtggtgcgcg agctcgccga
      961 tcgcatcatc gtgctgcaca acggccagct cgtcgccgac ggcgagccgg ccgaggtgat
     1021 cgcctcgccc gttgtgcggg aggcctatct gggcgtcgag gtgggcaaat gagcgggccg
     1081 ttgctgcagc tcgaaggggt tcacacccac atcggcgcct accacatcct gcacggcgtc
     1141 gatttcgagg tgccggcggg gcaggtgacg atgctgctcg gccgcaacgg cgccggcaag
     1201 accacgacct tgcggacgat catggggctg tgggcagcct cgcagggcac ggtcaggttc
     1261 gacggccggc agatcggcgg gcccggcgcg gctgcgggcg acccggcgcg cgggcagcgc
     1321 ggcacgcccg agatcgccca gctcggcatc gcctacgtgc ccgagaacat gggcatcttc
     1381 gcggacctga gcgtggccga gaacatgttg ctcgccgcgc gcggcgcgcg caccctcgac
     1441 cggctcgaca cggcgcgcct cgagtggctc ttcggcctct ttccggcgct gaagaagttc
     1501 tggctctacc cggccgggaa gctctcgggc gggcagaagc agatgctcgc catcgcccgc
     1561 gcgatggtcg agccgcggcg cctgctcctg atcgacgagc cgagcaaggg cctggccccg
     1621 gcgatcgtgc agaacctgat ctcggcgttg cgcgaattga agcgcaccga gacgacggtg
     1681 ctgctcgtcg agcagaattt cgcgatggcc agggcgctcg gcgaccgggt cgcggtgatg
     1741 gacgacggcc gcgtcgtgca ccgcggcccg atggccgagc tggccgggga cgaggggctg
     1801 cagcaccgcc tgctcggcct ctcgctcgcc gcgcaccagt gaacgcgaag agggccgcga
     1861 ccatgaccag cctcgccacc ccggccgcgc ccgcgccgac cgacgccatc ccgaagaccc
     1921 gcttcgacgc gcgcccgctc gtgctgatgg cggtgctcgc gctggcggca tggccgctcg
     1981 tcggctcgtc gtcgacctgg ctcacgctca cggtcgccgg gctggcgatg ggcatgatca
     2041 tcttcatcac cgcctcgggc ctgacgctcg tgttcgggct gatggacgtg ctcaatttcg
     2101 gccacagcgt cttcatcgcg ctcggcgcgt tcatcgccgc cagcgtcttc ggcgcgctga
     2161 ccggatggac ctcggccgcg agcctcggcc cgaacctcgc ggcggtgttc gtcgcgatgc
     2221 tcgccgcaat ggtgctggcc gggatcgtcg gcctcggctt cgagcgcgtg atcgtgcggc
     2281 cggtctacgg ccagcacctg aagcagatcc tcgtcacgat cggcggcgcg atcatcggcg
     2341 aggagctgat caaggtcgtg tggggcccgg cccagatccc gctaccgccg cccgaagcgc
     2401 tgcgcggttc gatcctgatc ggcgatgcct cggtcgagaa gttccgtctc gtcgcggtgg
     2461 cggtcggcct ggtcgtgctc gccgccttgc tctacacgct ggaccggacc aaggtcggcc
     2521 tgctgatccg cgccggcgtg caggatcgcg aaatggtcga gagcctgggc taccgcatcc
     2581 gccgcctctt cgtcggcgtc ttcgccatgg gctccgcgct cgccgggctt ggcggaagcc
     2641 tgtggggcat gaaccagcag atcgtttcgc cgcagatcgg cgcgcaggtc aacgtgctgc
     2701 ttttcatcgt catcatcatc ggcggcctcg gctcgacgct cggctgcctc gtcggcgcgc
     2761 tcgccgtcgg gctgctcacg aactacgtcg gct
//
LOCUS       DASVHM010000319         2177 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_22581, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000319 DASVHM010000000
VERSION     DASVHM010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22581"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..308)
                     /gene="gspI"
                     /locus_tag="VF308_06010"
     CDS             complement(<1..308)
                     /gene="gspI"
                     /locus_tag="VF308_06010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspI"
                     /protein_id="HEX7436242.1"
                     /translation="MRRAAGFTLIEVMVALTIVAITLGAGVRAAGSLIGNTQRLTDMS
                     AAQWCADNRLTALKLAHIYPDVGDGTFTCQQFGRTYAGMQTVRPTPNPNFRRVDTRVS
                     "
     gene            complement(308..793)
                     /locus_tag="VF308_06015"
     CDS             complement(308..793)
                     /locus_tag="VF308_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEX7436243.1"
                     /translation="MPRSAPGSSTRRRGSRGFTLIELMIVVVLIAVASSIASLALRDP
                     ASTTLEREGARLAALLEGARAEARASGLAAYWEPQSPTPEMPGFRFVGLPPSEELPTR
                     WLESGVTAEVVGARAVVLGPEPLIGAQRIVLRLRDQRLTLATDGLGPFIVVSEVDTVS
                     R"
     gene            complement(768..1205)
                     /gene="gspG"
                     /locus_tag="VF308_06020"
     CDS             complement(768..1205)
                     /gene="gspG"
                     /locus_tag="VF308_06020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015012575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HEX7436244.1"
                     /translation="MTSSPRTKSRSNRGFTLIELMVVVVIIGVLAALIVPNVLERADD
                     ARVTAARTDVNNLMQALKLYKLDNQRYPSAEQGLQALVAKPTVGAIPPNWKPYLDKLP
                     NDPWGHPYQYANPGLKGEIDVYSFGADGVIGGEGKNAEIGSWQ"
     gene            1266..1889
                     /locus_tag="VF308_06025"
     CDS             1266..1889
                     /locus_tag="VF308_06025"
                     /inference="COORDINATES: protein motif:HMM:NF022800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein N"
                     /protein_id="HEX7436245.1"
                     /translation="MSARLSAFVIWALIAATAVFWALRLVVRAPAAPAHAVAVGDALV
                     GRGDLSRLLGAPAAAAEPLAAQAPEASSRFRLLGIMASRSGRAGAHGDGLALIAVDGK
                     PARAYAVGSHLDGDLVLQAVSLRTASIGPAQGAQGLVLEIPRLPAAATGTLAPVGAPA
                     PAPLPTVAPPLPVGVPAALQQPPVIAPPVASPPGPMSVQRDGGAQTQ"
     gene            complement(1925..>2177)
                     /locus_tag="VF308_06030"
     CDS             complement(1925..>2177)
                     /locus_tag="VF308_06030"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017334189.1"
                     /note="threonine deaminase; threonine dehydratase; in
                     Escherichia coli, IlvA is part of the isoleucine
                     biosynthetic pathway; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HEX7436246.1"
                     /translation="DERLYRFIFPERPGALMRFLSSMPAGWNISLFHYRNQGADYGRI
                     LVGIQVPQADKAAFRKFLRGLAYPCQDETGNPAYRLFLA"
BASE COUNT          301 a          743 c          784 g          349 t
ORIGIN      
        1 tcggacacgc gcgtgtcgac gcgccggaag ttcgggttcg gtgtcggccg tacggtctgc
       61 atgccggcat aggtgcggcc gaactgctgg caggtgaacg tgccgtcgcc gacatccggg
      121 tagatgtgcg cgagtttcaa cgcggtgagc cggttgtctg cacaccattg ggcggcgctc
      181 atgtcggtca gacgctgggt gttgccgatg agcgaaccgg cggcgcgcac gcccgcgccg
      241 agcgtgatcg cgacgatcgt cagcgcgacc atgacctcga tcagcgtgaa ccccgcggcg
      301 cgtcgcatca gcgtgacacc gtgtcgacct cggacacgac gatgaagggc ccgagcccgt
      361 cggtcgcaag cgtgagtcgc tggtcgcgca ggcgcaggac gatgcgctgc gcgccgatca
      421 agggctccgg gcccagcacc accgcccggg cgccgaccac ctcggcggtg accccgctct
      481 cgagccagcg cgtcggcagt tcttcggatg gcggcaggcc gacgaagcga aagccgggca
      541 tctccggcgt cgggctttgg ggctcccagt acgccgcgag gccggaggcg cgggcctcgg
      601 cccgcgcacc ttcgagcagc gcggccaagc gcgcgccttc gcgttcgagc gtggtcgagg
      661 ccggatcgcg caatgccagg ctcgcgatcg agcttgcgac cgcgatcaac acgacgacga
      721 tcatcagctc gatcagcgtg aagccgcgcg atcctcgtct ccgtgtgcta ctgccaggag
      781 ccgatctcgg cattcttgcc ctcgccgcca atgactccgt cggcgccgaa actgtagacg
      841 tcgatttcgc ccttcaggcc cgggttggcg tactggtagg ggtggcccca cgggtcgttg
      901 gggagtttgt cgagatacgg cttccagttc ggcggaatcg cgccgaccgt cggcttggcg
      961 acgagcgcct gcaagccctg ctcggcactc ggatagcgct ggttgtcgag cttgtagagc
     1021 ttgagggctt gcatcaggtt gttgacgtcg gtgcgcgccg ccgtgacgcg cgcatcgtcg
     1081 gcgcgctcga gcacgttggg cacgatcaac gcggcgagca caccgatgat cacgaccacg
     1141 accatcagct cgatcagcgt gaagccgcgg ttgctgcgcg atttcgttct cggcgacgag
     1201 gtcatggcgg atttgtgccg gcgaagtggc cggtgctggg gcaggcgttg aatcataatc
     1261 gtcgcatgag cgcgcgcctg tccgcattcg tgatctgggc cctgattgcg gcgactgccg
     1321 tgttctgggc cctgcgtctc gtggtgcgtg cgcccgccgc gccggcgcac gcggtcgcgg
     1381 tgggcgacgc gctcgtcggt cgcggcgatc tgtcccgcct gctcggcgcg cctgcggcgg
     1441 ccgccgaacc gctcgccgcc caggcgcccg aagcgagttc gcgctttcgc ctgctcggca
     1501 tcatggcgtc gcggtcgggg cgcgctggcg cgcacggcga cggcttggcc ctgatcgcag
     1561 tcgatggcaa gccggcgcgc gcgtacgcgg tcggttcgca cctcgatggc gacctggtgc
     1621 ttcaagcggt gagcctgcgc accgcgtcga tcgggccggc ccagggcgcg caaggtctgg
     1681 tgctcgaaat tccgcgcctg ccggccgccg ccaccggcac cctggcgcct gtcggtgcgc
     1741 cggccccggc gcccttgccg accgtcgcgc cgcccctgcc ggtcggcgtg cctgcggcac
     1801 tccagcagcc gcccgtcatc gcgccgccgg tcgcgtcccc acccgggccg atgtcggtcc
     1861 agcgcgacgg cggcgcgcag acgcagtaat cgcgccgcgc cggtcgcgaa cgatcaggcg
     1921 aggatcaggc gaggaacagg cggtacgcgg gattcccggt ctcgtcctgg cacgggtagg
     1981 cgaggccgcg caggaacttc cggaacgccg ccttgtcggc ctgcggcacc tggatgccga
     2041 ccaggatgcg accatagtcc gcgccctgat tgcgatagtg gaagaggctg atattccagc
     2101 cggcgggcat gctcgacagg aagcgcatca gcgcgccggg ccgttccgga aagatgaagc
     2161 ggtagaggcg ctcgtcc
//
LOCUS       DASVHM010000320         4356 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_601353, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000320 DASVHM010000000
VERSION     DASVHM010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4356
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_601353"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..296)
                     /locus_tag="VF308_06035"
     CDS             complement(<1..296)
                     /locus_tag="VF308_06035"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HEX7436247.1"
                     /translation="MSSFFVRIALMFFCATGIALAQAPQRAEPVLGVGDVVKISVYQN
                     PDLSVDARVSETGQVNFPLIGAVKIGGLSVSQAQALIEKMLRDGGFVLKPQVTI"
     gene            complement(320..1381)
                     /locus_tag="VF308_06040"
     CDS             complement(320..1381)
                     /locus_tag="VF308_06040"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EpsD family peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX7436248.1"
                     /translation="MTMPVPPRSRPRRRIGAARAFALALAVGATLLAGCSDKKKEKAA
                     TQTAAKVNKEEITVHQINFILAQQRATAPAQAASASRMVLERLIDQELALQKASDQKL
                     DREPRVVQQIEAARREIISRAYLEKIGEGAPKPTPAEVAAYYEAHPALFKERRVYSLQ
                     EVAIEATPEQIESLKKVLLGSKTFAEFVAYLKANNLRFTGNEAVRAAEQLPLAGVDQF
                     ARMKDGQAIFNVRPGGAQIINLAASRQQPVTLQQATPAIEQFLLNERKRKLVFDDMQA
                     LRGAAKIEYLGDFAADAASSPYRPASAPELPPLVQMPATLPASEVKAAPQVDVAPIDT
                     KAASMPSDSSLDKGLKGFK"
     gene            1736..3175
                     /locus_tag="VF308_06045"
     CDS             1736..3175
                     /locus_tag="VF308_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEX7436249.1"
                     /translation="MGVKLKVAGWLALGAVAGALATMQLEATARNSVARLPIEELQQL
                     AAVFGMVKSDYVEPVDEKKLISDAIGGMVAGLDPHSQYFDKKSFKEFREATTGRFVGI
                     GIEMAMEDGLVKVVSPIEGSPAFRAGLKSGDLITKIDDTLVKGLSVDQAVKRMRGEPN
                     TKVVLTVFRKSEGRTFPVNIVREEIRTQSVRAKMIEPGYAWLRVSQFQDRTVEDFANK
                     LQDLFKQDPNLKGLVLDLRNDPGGLLEGAIAISAAFLPADAIVVTTNGQIPDSKATFK
                     ASPEYYQRRGGADPLRRLPDAVKKVPLIILVNEGSASASEIVAGALQDYHRGTIMGAQ
                     TFGKGSVQTVRQLSPETALKITTARYYTPSGASIQAKGIVPDVMLDETAEGNLFAALR
                     TREADLEKHLQSGQGAEVKDDVREKAREEARKKFEAEQAKAQIPKPPPEFGSAEDFQL
                     AQALNRLKGKTVLASKTAVERKAEVETTN"
     gene            3252..4022
                     /locus_tag="VF308_06050"
     CDS             3252..4022
                     /locus_tag="VF308_06050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HesA/MoeB/ThiF family protein"
                     /protein_id="HEX7436250.1"
                     /translation="MTDDDLLRYSRHLLLDDIGIEGQRRLLAAHALVVGAGGLGSPVA
                     LYLGTAGVGRITIVDNDRVDLTNLQRQIAHDLARVGMAKAESAARSIAAINPTLRVTA
                     LHERADRARLLELVADADVVVDCSDNFATRQAVNAACVAHARPLVAGAAIGFDGQLSV
                     YDTRSPASPCYACAFPPDPAFADVACATMGVFAPLVGIIGSLQAAEALKLLLGIGTSL
                     AGRLQMLDARTMEWTEIGVARDPACPVCAPLRRSRTDA"
     gene            complement(3997..>4356)
                     /locus_tag="VF308_06055"
     CDS             complement(3997..>4356)
                     /locus_tag="VF308_06055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011507064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-galactarate dehydratase"
                     /protein_id="HEX7436251.1"
                     /translation="ETPTHPGLWFMDSSSAAAEMVTLCAASGYAVHFFPTGQGNVIGN
                     PILPVIKICANPRTVRLMGEHIDVDTSGLLQREINLDQAGDKLLECMLRTANGRLTAA
                     EALGHREFVLTRLYESA"
BASE COUNT          705 a         1512 c         1469 g          670 t
ORIGIN      
        1 tggatcgtca cctgcggctt gagcacgaag ccgccgtcgc gcagcatctt ctcgatcaat
       61 gcctgcgcct gcgagaccga gaggccgccg atcttgaccg cgccgatgag cgggaagttg
      121 acctgtccgg tttcggagac gcgcgcgtcg accgacaggt cggggttctg gtagaccgat
      181 atcttgacga cgtcgccgac gccgagcacc ggctcggcgc gttgcggcgc ctgcgccaac
      241 gcgattcccg tcgcgcagaa gaacatcaac gcgatgcgaa cgaagaagct gctcatggcg
      301 gagtgcaggg cgaccgatct cacttgaatc ccttcagacc tttatcgagg ctggaatcgc
      361 tcggcatcga cgccgccttg gtgtcgatcg gcgccacgtc gacctgcggc gccgccttga
      421 cttccgaggc cggcagcgtc gccggcatct ggaccagggg aggcagctca ggcgccgacg
      481 ccggccggta cggcgagctc gccgcgtcgg cggcgaagtc gcccaggtat tcgatcttgg
      541 ccgcgccgcg cagcgcctgc atgtcgtcga agacgagctt cctcttgcgc tcgttgagca
      601 ggaactgctc gatcgccggc gtcgcctgct gcagcgtcac cggctgctgc cgcgaggcgg
      661 cgaggttgat gatctgcgcg ccgccgggac ggacgttgaa gatcgcctgg ccgtccttca
      721 tcctggcgaa ctggtcgacg cccgcgagcg gcagctgctc ggccgcacgc accgcctcgt
      781 tgcccgtgaa gcggaggttg ttcgccttca ggtaggcgac gaactccgcg aaggtcttgg
      841 atccgagaag gaccttcttc agcgactcga tctgctccgg ggtcgcctcg atggcgactt
      901 cctgcaggct gtagacgcgc cgctccttga acagcgccgg atgcgcctcg tagtaggcgg
      961 cgacctcggc cggtgtcggc ttgggagcgc cctcgccgat cttctcgagg taggcgcgcg
     1021 agatgatctc gcgccgcgcc gcttcgatct gctggacgac gcgcggttcg cggtcgagct
     1081 tctggtccga cgccttctgc agcgcgagct cctggtcgat caggcgctcg agcaccatcc
     1141 ggctcgccga cgcggcctgc gccggcgccg tggcgcgctg ctgggcgagg atgaagttga
     1201 tctggtggac ggtgatctct tccttgttca ccttggccgc cgtctgggtg gcggcctttt
     1261 ccttcttctt gtcgctgcag ccggcgagca gcgtcgcccc gacggccagg gccagggcga
     1321 aggcgcgggc ggcgccgatc cggcgccggg ggcgcgaacg gggcggaaca ggcatggtca
     1381 tgaacagtct cactcgtggc tccgggggcc tcgtccgctc tggatcgagc ccgcgagtgt
     1441 attgcgcggg cgaatcccgg ccccggacgg ccccgtgcaa aagtacccgg ctgcggaggt
     1501 tacagtccga ccctcgcaga ccaccccccg tgaacgcggg tgatcgccgc agaaacggct
     1561 cccggcagcc ctggccaagc cagatgccga cgagggccat tgaaaaccgg taaaaccgct
     1621 gcaagttcgc cctgccaacg ggcgccgaaa ttgcttgccg caatatactt ggagtgtcgc
     1681 tttgccgcag tcgatgaaat ccatggccga gggccggaaa ccgaaggggt cgttcatggg
     1741 agtcaaactc aaggtcgcgg gctggctggc actcggcgcc gtcgccggag cgctggcgac
     1801 catgcagctc gaggccactg cgcgcaactc ggtcgcccgc cttcccatcg aggagctgca
     1861 gcagctcgcc gccgtcttcg gcatggtcaa gagcgactac gtcgagcctg tcgacgagaa
     1921 aaagctcatc agcgacgcga tcggcggcat ggtcgccggc ctcgatccgc actcgcaata
     1981 tttcgacaag aagagcttca aggaattccg cgaggccacg accggccgct tcgtcggcat
     2041 cggcatcgag atggcgatgg aagacggcct ggtgaaggtc gtcagcccga tcgaaggctc
     2101 gccggcgttt cgcgccggcc tgaagagcgg cgacctcatc accaagatcg acgacacgct
     2161 ggtcaagggc ttgtcggttg accaggccgt caagcgcatg cgcggcgagc cgaacaccaa
     2221 ggtcgtcctc accgtctttc gcaagagcga gggacggacg ttccctgtca acatagtccg
     2281 cgaggagatc cgcacccaga gcgttcgcgc caagatgatc gagcccggct acgcgtggct
     2341 gcgcgtgagc cagttccagg atcgcaccgt cgaggacttc gccaacaagc tgcaggatct
     2401 cttcaagcag gacccgaacc tgaagggcct ggtgctcgac ctgcgcaacg acccgggcgg
     2461 cctgctcgaa ggcgcgatcg cgatctcggc ggcgttcctg ccggccgatg cgatcgtcgt
     2521 caccaccaac ggccagatcc ccgattcgaa ggcgacgttc aaggcctcgc ccgagtacta
     2581 ccagcgccgc ggcggcgccg atccgctgcg gcgcctgccc gacgcggtga agaaggtgcc
     2641 gctgatcatc ctcgtcaacg aaggctcggc ctcggcgagc gagatcgtcg ccggcgcgct
     2701 gcaggactac caccgcggca cgatcatggg cgcgcagacc ttcggcaagg gatcggtgca
     2761 gaccgttcgc cagctctcgc ccgagacggc gctgaagatc accaccgccc gctactacac
     2821 gccgagcggc gcctcgatcc aggccaaggg gatcgttccc gacgtcatgc tcgacgagac
     2881 cgccgagggc aacctgttcg cggccctgcg cacgcgcgag gccgatctcg agaagcacct
     2941 gcagagcggc cagggcgccg aggtcaagga cgacgttcgc gagaaggcgc gcgaggaagc
     3001 gcgcaagaag ttcgaggccg agcaggcgaa ggcgcagatt cccaagccgc cgccggagtt
     3061 cggcagcgcc gaggacttcc agctcgccca ggcgctcaac cggctcaagg gcaagaccgt
     3121 tctcgccagc aagaccgcgg tcgagcgcaa ggccgaggtc gagacgacca actgagcgag
     3181 gccgcctcgg ccgcgccgaa acgcccgtgt ccgccacggg cgttttcact tttgccgcgc
     3241 cctcctccgc gatgaccgac gacgacctgc tgcgctactc gcgccacctg ctgctcgacg
     3301 acatcggtat cgaagggcag cggcgtctgc tcgcggcgca cgcgctcgtc gtcggcgcgg
     3361 gcggcctcgg ctcgccggtg gcgctctacc tcggcacggc cggcgtcggc cggatcacga
     3421 tcgtcgacaa cgaccgcgtc gacctcacca acctgcaacg acagatcgcc cacgatctcg
     3481 cccgcgtcgg catggcgaag gcggagtcgg cggcgcggtc gatcgccgcc atcaacccga
     3541 cgctgcgcgt caccgccctg cacgagcgcg cggaccgggc ccggctgctc gagctcgtcg
     3601 ccgacgccga cgtggtggtc gactgcagcg acaacttcgc gacccgccag gccgtcaacg
     3661 cggcgtgcgt cgcgcacgcc aggcccctcg tcgccggcgc ggcgatcggc ttcgacggcc
     3721 agctctcggt ctacgacacg cgctcgccgg cgtcgccctg ctacgcctgt gccttcccgc
     3781 cggacccggc gttcgccgac gtcgcctgcg cgacgatggg cgtgttcgcg ccgctcgtcg
     3841 gcatcatcgg cagcctgcag gcggccgaag cgctgaagct cctgctcggc atcggcacgt
     3901 cgctcgcggg gcgactgcag atgctcgacg cgcggacgat ggagtggacc gagatcggcg
     3961 tcgcgcgcga ccccgcctgc ccggtctgcg cgccgctcag gcgctctcgt acagacgcgt
     4021 gaggacgaac tcgcggtggc cgagcgcctc ggccgccgta aggcgtccgt tggcggtgcg
     4081 cagcatgcac tcgagcaact tgtcgccggc ctggtcgagg ttgatctcgc gctgcaagag
     4141 gcccgacgtg tcgacgtcga tgtgctcgcc catcagccgc accgtgcgcg gattggcgca
     4201 gatcttgatc accggcagga tcgggttacc gatgacgttg ccctggccgg tcgggaagaa
     4261 gtgcacggcg tagcccgagg ccgcgcagag cgtcaccatc tcggccgcag cgctcgacga
     4321 atccatgaac cacaggcccg gatgcgtcgg cgtctc
//
LOCUS       DASVHM010000321         2195 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_890574, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000321 DASVHM010000000
VERSION     DASVHM010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_890574"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..396)
                     /locus_tag="VF308_06060"
     CDS             complement(<1..396)
                     /locus_tag="VF308_06060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEX7436252.1"
                     /translation="MKFTAFERTVQGTGASRRLRNAQKVPGIVYGAGMPAMIELDHNA
                     LFFALKKEAFHSSLLDMELAGKTEQVLLRDYQMHPFKPIVMHIDFQRVDATTKVTKKV
                     PLHYVNEENSPAVKTDACVVNHIVNELNIQ"
     gene            complement(499..1461)
                     /locus_tag="VF308_06065"
     CDS             complement(499..1461)
                     /locus_tag="VF308_06065"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEX7436253.1"
                     /translation="MLFNTVLFTGNANPALAQDIATHLSIGLGKAKVGRFSDGEVDVE
                     IEQNVRARDIFVVQPTCSPTNENLMELCIMVDALKRASARRVTAVIPYFGYARQDRRP
                     RSTRVPISAKVVANMLEAVGVERLLTMDLHADQIQGFFNIPVDNIYASPVLLSDLQSK
                     RYDDLVVVSPDVGGVVRARALAKQAGCDLAIIDKRRPKANVSEVMHVIGEIEGRNCVI
                     MDDMIDTAGTLVKAADVLKERGAKKVYSYCTHAVFSGPAIERIQASKLDEVVVTDTIP
                     LAEEGKRCAKVRQLSVAFLFAETIRRISDGESVTSLFAEQNSNF"
     gene            complement(1494..1570)
                     /locus_tag="VF308_06070"
     tRNA            complement(1494..1570)
                     /locus_tag="VF308_06070"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1534..1536),aa:Gln,seq:ttg)
     gene            complement(1627..>2195)
                     /gene="ipk"
                     /locus_tag="VF308_06075"
     CDS             complement(1627..>2195)
                     /gene="ipk"
                     /locus_tag="VF308_06075"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="An essential enzyme in the nonmevalonate pathway of
                     isopentenyl diphosphate and dimethylallyl diphosphate
                     biosynthesis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEX7436254.1"
                     /translation="LDWPLERLLPIGLALGADVPFFLAGANAIAAGIGERLVPVEVEP
                     AWFAVVKPAAGLATGEVFARPEVAERVAAARIAGFSEAIPGVDAVPGALGKTGPRLAE
                     GFGTNDLQAAAEGLCPDVERAAAALSRTFGNSRMTGSGSAVFARAGSGPAPSAAMPSD
                     WPSGWSGRMCRSLRRHPLEAWAGRGRGL"
BASE COUNT          367 a          717 c          745 g          366 t
ORIGIN      
        1 ctggatattc agctcgttga cgatgtggtt gacgacgcag gcgtcggtct tcaccgccgg
       61 cgagttctcc tcattgacat agtgcagcgg caccttcttc gtgaccttgg tcgtcgcgtc
      121 gacgcgctgg aagtcgatgt gcatcacgat cggcttgaac ggatgcatct ggtagtcgcg
      181 cagcaggacc tgctcggtct tgccggcgag ctccatgtcg agcagcgacg agtggaaggc
      241 ctccttcttg agcgcgaaga agagggcgtt gtgatcgagc tcgatcatgg ccggcatgcc
      301 ggcgccgtag acgatgccgg gaaccttttg cgcgttgcgc aggcggcggc tcgctccggt
      361 cccctgcaca gtgcgctcga aagcggtgaa tttcatgaca actccaaaaa gtgaaggccc
      421 gcgaccaggc gcttcgttac aacggggcga agccccgcaa ccgagaaggg cttcgcgcag
      481 cgaagcccgc ttgtccgact agaaattact gttctgttcc gcgaagaggg aggtgaccga
      541 ctcgccgtcg gagatgcgcc ggatcgtctc cgcaaataga aaggcgaccg acagctggcg
      601 caccttggcg cagcgcttgc cttcttcggc gagcgggatc gtgtcggtga cgacgacctc
      661 gtcgagcttg gaggcctgga tgcgctcgat cgccggcccc gagaacactg cgtgcgtgca
      721 gtacgaatag accttcttgg cgccgcgctc cttgagcacg tcggccgcct tcacgagcgt
      781 gccggcggtg tcgatcatgt cgtccatgat cacgcagttg cggccttcga tctcgccgat
      841 gacgtgcatg acttccgaga cgttggcctt cggacgccgc ttgtcgatga tcgccaggtc
      901 gcagcccgcc tgcttggcga gcgcccgcgc gcggacgacg ccgccgacgt cgggcgagac
      961 gacgacgagg tcgtcgtagc gcttgctctg caggtcggag agaagcaccg gcgaggcgta
     1021 gatgttgtcg accgggatgt tgaagaagcc ctgaatctgg tcggcgtgca ggtccatcgt
     1081 caaaaggcgc tcgacgccga cggcctcgag catgttggcg acgaccttgg cgctgatcgg
     1141 cacccgcgtc gagcgcggcc ggcggtcctg gcgggcgtag ccgaagtacg ggatcaccgc
     1201 ggtcaccctg cgcgccgacg cgcgcttgag cgcgtcgacc atgatgcaga gctccatcag
     1261 gttctcgttg gtcggcgagc acgtcggctg gacgacgaag atgtcgcgcg cgcgcacgtt
     1321 ctgctcgatc tcgacgtcga cctcgccgtc cgagaagcgc ccgaccttgg ccttgccgag
     1381 gccgatcgac aggtgcgtgg cgatgtcctg cgcgagggcg ggattcgcat tgcctgtgaa
     1441 gagaacggta ttgaagagca cgacaactcc ggagggcggc gattcagcga atttggcagg
     1501 ggaggaagga ttcgaacctt cgcatgtcgg aatcaaaatc cgatgcctta accagcttgg
     1561 cgactcccct acaccggtgc ccggctcgcg ccgttcacct tgaaaccttc gcggcttgtc
     1621 cgcgaatcac aagccccgcc cgcggccggc ccaggcttcg agcgggtggc gccgcagcga
     1681 gcggcacatc cggcccgacc agcccgaggg ccaatcgctc ggcatcgctg ccgatggcgc
     1741 cgggccgctt cccgcccgcg cgaagaccgc gcttcccgaa cccgtcatcc ggctgttgcc
     1801 gaaggttcgc gacagagcgg ccgcggcgcg ttcgacatcg gggcaaagac cctcggccgc
     1861 ggcctggagg tcgttcgtcc cgaagccttc ggcaagtcga ggcccggttt tccccagcgc
     1921 ccccggcacg gcatcgacgc ccgggattgc ttcggaaaag cccgcgattc tagcagcggc
     1981 gacgcgctcg gcgacctccg gccgggcgaa gacctcgccc gtggccagcc cggcggccgg
     2041 cttgacgacg gcgaaccacg ccggctcgac ctcgaccggg acgagccgct cgccgatgcc
     2101 cgcggcgatg gcattggctc cggcgaggaa gaacgggacg tcggcgccga gcgccaggcc
     2161 gatcggcagg agccgctcga gcggccagtc gaggc
//
LOCUS       DASVHM010000322         3261 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1250151, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000322 DASVHM010000000
VERSION     DASVHM010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3261
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1250151"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..699
                     /gene="rplB"
                     /locus_tag="VF308_06080"
     CDS             <1..699
                     /gene="rplB"
                     /locus_tag="VF308_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEX7436255.1"
                     /translation="RNNNGHITTRHKGGGHKHHYRVVDFVRNKDSIPAKVERIEYDPN
                     RSAHIALVVYADGERRYVIAPRGLEVGSTILSGAEAPIKAGNTLPIRNIPVGSIIHCI
                     EMLPGKGAQIARSAGTACTLLAREGTYAQVRLRSGEVRKIHIDCRATIGEVSNEEHSL
                     RHYGKAGAKRWKGIRPTVRGVAMNPVDHPHGGGEGRTGEGQAPVSPWNTLTKGYRTRN
                     NKRTQTMIVARRKK"
     gene            712..990
                     /gene="rpsS"
                     /locus_tag="VF308_06085"
     CDS             712..990
                     /gene="rpsS"
                     /locus_tag="VF308_06085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEX7436256.1"
                     /translation="MTRSLKKGPFIDHHLAAKVEKASATKDKKPIKTWSRRSTILPDF
                     IGLTIAVHNGKQHVPVYVTDQMVGHKLGEFALTRTFKGHPADKKAAKK"
     gene            1002..1331
                     /gene="rplV"
                     /locus_tag="VF308_06090"
     CDS             1002..1331
                     /gene="rplV"
                     /locus_tag="VF308_06090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007866508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEX7436257.1"
                     /translation="METRSIVRGVRLSADKGRLVADLVRGKKVDQAINILNFTQKKAA
                     GIIKKALESAIANAEHNDGADIDELKVKTIYVEQGATLKRFSARAKGRGNRISKPTAH
                     IYITVGN"
     gene            1351..2307
                     /gene="rpsC"
                     /locus_tag="VF308_06095"
     CDS             1351..2307
                     /gene="rpsC"
                     /locus_tag="VF308_06095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEX7436258.1"
                     /translation="MGQKIHPTGFRLPVTRNWSSRWYASNKNFATMLAEDLKVREYLK
                     TRLKNAAVSRILIERPAKNARITIYSARPGVVIGKKGEDIENLKAELTRRLGVPVAVN
                     IEEVRKPEIDAQLIADSITQQLEKRIMFRRAMKRAMQNAMRLGAQGIKLMSSGRLNGI
                     EIARCEWYREGRVPLHTLKADIDYGFSEAKTTYGVIGVKCWVYRGDRLANGEAPNINT
                     PAGAEDDRRNRRGPRPGGPGGAPGGRTRTGGGPGGAGGDRPPRASAPAGADAKPGDAA
                     AAAAPTAAPTGDAPKGPAVKRVRKAPTPAAGEAKPKADGKGE"
     gene            2310..2726
                     /gene="rplP"
                     /locus_tag="VF308_06100"
     CDS             2310..2726
                     /gene="rplP"
                     /locus_tag="VF308_06100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013517326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEX7436259.1"
                     /translation="MLQPARRKFRKEQKGRNTGVATRGANVSFGDFGLKATERGRLTA
                     RQIEAARRAISRHVKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKV
                     LYEINGVPEALAREAFLLASAKLPLKTTFVMRQVGA"
     gene            2750..2986
                     /gene="rpmC"
                     /locus_tag="VF308_06105"
     CDS             2750..2986
                     /gene="rpmC"
                     /locus_tag="VF308_06105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEX7436260.1"
                     /translation="MKTSDLRAKDAAGLEKEVSELLKAHFGLRMQKATQQLTNHSQLG
                     NTRRDIARAKTIQAEQKQVAAGKKPAAKKTGARK"
     gene            2983..>3261
                     /gene="rpsQ"
                     /locus_tag="VF308_06110"
     CDS             2983..>3261
                     /gene="rpsQ"
                     /locus_tag="VF308_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEX7436261.1"
                     /translation="MNADVNPSAEPAAAVAPAVPRAKNTRTLIGKVVSDKRSKTITVL
                     IERRTKHELYGKIVAKSSKYHAHDEKGEYKMGDVVEIAESRPISKTKSW"
BASE COUNT          693 a         1114 c         1069 g          385 t
ORIGIN      
        1 cgtaacaaca acggccacat cacgacgcgg cacaagggcg gcggccacaa gcaccactat
       61 cgtgtcgtcg atttcgtgcg caacaaggac tcgattccgg caaaggtcga gcgcatcgag
      121 tacgacccga accgcagcgc ccacatcgcc ctcgtcgtct acgccgacgg cgagcgccgc
      181 tacgtgatcg cgccgcgcgg cctcgaggtc ggctcgacga tcctgtcggg cgccgaggcg
      241 ccgatcaagg ccggcaacac gctgccgatc aggaacatcc cagtcggctc gatcatccac
      301 tgcatcgaga tgctgccggg caagggcgcg cagatcgcgc gctcggccgg cacggcgtgc
      361 acgctgctgg cgcgcgaagg cacctacgcg caagtgcgcc tgcgctcagg cgaagtgcgc
      421 aagatccaca tcgactgccg cgccaccatc ggcgaggtct cgaacgaaga gcacagcctg
      481 cgccactacg gcaaggccgg cgccaagcgc tggaagggca tccgcccgac ggtgcgcggc
      541 gtcgccatga acccggtcga ccacccgcac ggcggcggcg aaggccgcac cggcgagggc
      601 caggcgccgg tctcgccgtg gaacacgctc accaagggct atcgcacgcg caacaacaag
      661 cgcacgcaga cgatgatcgt cgcgcgccgc aagaagtaag aaggtccctc catgactcgt
      721 tcgctcaaga agggcccgtt catcgaccat cacctcgcgg cgaaggtcga gaaggcgagc
      781 gccaccaagg acaagaagcc gatcaagacc tggtcgcgcc gctcgacgat cctgcccgat
      841 ttcatcggcc tgacgatcgc cgtgcacaac ggcaagcagc acgtgccggt gtacgtcacc
      901 gaccagatgg tcggccacaa gctcggcgag ttcgcgctca cccgcacctt caagggtcac
      961 ccggccgaca agaaggccgc gaagaagtaa ggatggcaac gatggaaacc agatcgatcg
     1021 ttcgcggcgt tcgcctctcc gccgacaagg gccggctcgt cgccgacctc gtccgcggca
     1081 agaaggtcga ccaggcgatc aacatcctca acttcacgca gaagaaggcc gccgggatca
     1141 tcaagaaggc gctcgaatcg gcgatcgcca acgccgagca caacgacggc gccgacatcg
     1201 acgagctcaa ggtcaagacg atctacgtcg agcagggcgc gacgctgaag cgcttctcgg
     1261 cgcgcgcaaa ggggcgcggc aaccgcatca gcaagccgac ggcgcacatc tacatcacgg
     1321 tcggcaactg accgcggcac caggaacacc atgggacaaa agattcatcc gacgggcttc
     1381 cggctgccgg tgacccgcaa ctggtcgtcg cgctggtacg cctcgaacaa gaacttcgcg
     1441 accatgctcg ccgaagacct caaggtgcgc gagtatctga agacgcggct gaagaacgcg
     1501 gcggtctcgc gcatcctgat cgagcgcccg gccaagaacg cgcgcatcac gatctactcg
     1561 gcacgcccgg gcgtcgtgat cggcaagaag ggcgaggaca tcgagaacct gaaggccgag
     1621 ctgacgcgcc gcctcggggt tccggtcgcc gtcaatatcg aagaggtgag gaagcccgag
     1681 atcgacgcgc agctgatcgc cgattcgatc acccagcagc tcgagaagcg gatcatgttt
     1741 cgccgcgcca tgaagcgggc gatgcagaac gctatgcgtc tgggcgcgca aggcatcaag
     1801 ctgatgtcgt cgggccggct caacggcatc gagatcgcgc gctgcgagtg gtatcgcgaa
     1861 ggtcgcgtgc cgctccatac gctgaaggcc gacatcgact acggcttttc ggaagccaag
     1921 acgacctacg gcgtcattgg cgtgaagtgc tgggtctatc gcggcgaccg cctcgccaac
     1981 ggcgaagcgc cgaacatcaa cacgccggcg ggcgcggaag acgatcggcg caaccgccgc
     2041 ggcccgcgtc cgggcggccc gggcggcgcg cccggtggcc gtacccgcac cgggggcggt
     2101 cccggcggcg ccggtggcga tcgtccgccg cgcgcgagcg cgccggctgg cgcagatgcc
     2161 aagcccggcg acgccgcggc ggctgcagca ccgaccgcgg cgccgaccgg cgatgcgccg
     2221 aagggcccgg cggtgaagcg cgtccgcaag gcgccgacgc cggccgctgg cgaagccaag
     2281 cccaaggccg acggcaaagg agaataagaa tgctgcaacc cgcgcgcaga aaattccgca
     2341 aggaacaaaa gggccgcaac accggtgtcg cgacgcgcgg cgccaacgtg tcgttcggcg
     2401 acttcggcct caaggcgacc gagcgcggtc gcctgacggc gcgccagatc gaggcggctc
     2461 gccgcgcgat ctcgcgccac gtcaagcgcg gcggccggat ctggatccgg atctttccgg
     2521 acaagccgat ttcgcagaag ccggccgaag tccgcatggg caacggcaag ggcaaccccg
     2581 agtactacgt cgccgagatc cagcccggca aggtgctcta cgagatcaac ggcgttcccg
     2641 aggcgctggc gcgcgaagcg ttcctgctcg cctcggcgaa gctgccgctc aagaccacgt
     2701 tcgtcatgcg ccaggtcggc gcctgatggc gacgtgagaa ggaataccca tgaagacgtc
     2761 tgacctccgc gccaaggacg ccgcgggcct cgagaaggaa gtgagcgagc tgctcaaggc
     2821 ccacttcggc ctgcgcatgc agaaggcgac gcagcagctc accaaccact cgcagctcgg
     2881 caacacgcgc cgcgacatcg ctcgcgcgaa gaccatccag gccgagcaga agcaggtcgc
     2941 ggccggcaag aagcccgcgg ccaagaagac tggagccagg aaatgaatgc cgacgtgaat
     3001 ccgagcgccg aaccggcggc cgctgtcgca ccagccgtcc cgcgcgccaa gaacacgcgc
     3061 acgctgatcg gcaaggtcgt gagcgacaag cgctccaaga ccatcaccgt gctgatcgag
     3121 cgccgcacga agcacgagct ctacggcaag atcgtcgcca agtcgagcaa gtaccacgcg
     3181 cacgacgaga agggcgagta caagatgggc gacgttgtcg agatcgccga aagccggccg
     3241 atctcgaaga ccaagtcgtg g
//
LOCUS       DASVHM010000323         2951 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_167037, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000323 DASVHM010000000
VERSION     DASVHM010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167037"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(77..2209)
                     /locus_tag="VF308_06115"
     CDS             complement(77..2209)
                     /locus_tag="VF308_06115"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone-dependent
                     dehydrogenase"
                     /protein_id="HEX7436262.1"
                     /translation="MQSSRSIRTSTSSRWTPGAVFIVATSLTCAQSAAQPDPAAGPNA
                     GATTTGHSPLAQITRANVSELVNAWTFHTGDLERRDTLTMRRSKFQVTPILAGDKLLV
                     CTPFNEVIALDPGTGAQLWRYDSKLRTDYRPANLFNCRGVAVWSDPQARGGTCAGRVF
                     TATNDARLIALDLATGLPCQDFGDHGQVQIRAGIDLLGRWELQITSAPVVVRGRVIVG
                     SSIADNQRVGSPRGTVRAFDARTGALSWQWDPIPHEASDPASATWGDGWQTSGSANVW
                     APMSADEARGLVLLPTSSPSPDFYGGLRPGSNLYADSVVALNAQTGERVWHFQTVHHD
                     VWDYDVASAPALASIDVGGQRRAAVIQGTKTGLLFVLDRDSGRPLLPVEERPVPQGGV
                     AGEVLSATQPFPADLPPLGPIRLTPDDAWGVTPFEREGCRHRIEAARNEGIFTPPSER
                     GTIIYPMTGGGVNWGGLAIDPAADVVFVNTNRLVHLVTLFPADRYDAMKTRFPGKEVS
                     RQRGAPFGMMREVLLSAWGLPCNRPPWGVLSAVDLRARRILWEAPLGTTEEIAPLGLA
                     LHTGSPNLGGPLHTAGGLIFIGAATDRYLRAFDAATGAERWLGRLPAAAMSTPASYEW
                     HGRQYVVVAAGGHGEVGAKAGDAVVAFALPVAGQSASDLWTRWIDRPGRRLATWSALA
                     LLALLTLAGASVRVWRRRRPSARHERSA"
     gene            complement(2218..2601)
                     /locus_tag="VF308_06120"
     CDS             complement(2218..2601)
                     /locus_tag="VF308_06120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX7436263.1"
                     /translation="MHDESPRAGSDGPWLVACLCAAWCHTCGDYRGTFEALARERPDF
                     RFAWIDIEDDSDALGPLALDVENFPTLLIARGETLRFYGTVLPHAATLRRTVEAARHA
                     VLTPAVDGLDAALVGRLHELGVRVS"
     gene            complement(2639..>2951)
                     /locus_tag="VF308_06125"
     CDS             complement(2639..>2951)
                     /locus_tag="VF308_06125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018422157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1810 domain-containing protein"
                     /protein_id="HEX7436264.1"
                     /translation="FVFPQLKGLGRSATARHFGIASRAEAEAYWRHPVLGARLKECSE
                     LVLAVEGRTALQIFGSPDDLKFSSSMTLFAQVARDEPVFRWALDKYFGGHVDKRTLEL
                     L"
BASE COUNT          435 a         1014 c         1083 g          419 t
ORIGIN      
        1 cccgccgcac ttctctcggc caggcggtgt ctgatcgtgg ccccgatgaa gtatgcactt
       61 cacggtcggc cgtgcctcaa gcggagcgct cgtgtcgagc cgatgggcgg cggcggcgcc
      121 agactcgcac cgaggcgcct gcgagcgtca gcagtgcgag caatgccagg gccgaccagg
      181 tcgccaggcg ccggcccggc cggtcgatcc agcgcgtcca gagatcggat gcggactgcc
      241 ccgcgaccgg cagcgcgaac gcgaccaccg cgtcgccggc cttggcgccc acctcgccat
      301 gcccgccggc cgcgacgact acgtactggc ggccgtgcca ctcgtagctg gccggtgtcg
      361 acatcgctgc ggcgggcagc cgaccgagcc agcgctcggc cccggtggcc gcatcgaagg
      421 cgcgcaggta gcggtcggtg gcggcgccga tgaagatcaa acctccggcg gtgtggagcg
      481 ggccgcccaa gttcgggctg ccggtgtgca gggccagccc gagcggggcg atctcttcgg
      541 tggtgccgag cggcgcctcc cagaggatgc gccgtgcgcg caggtcgacg gcgctcaaca
      601 cgccccacgg cggccggttg cagggcaggc cccaggccga cagcagcacc tcgcgcatca
      661 tgccgaaagg cgcgccgcgc tgtcgcgaca cttccttgcc ggggaagcgc gtcttcatgg
      721 cgtcgtacct gtcggcggga aacagcgtga cgaggtgaac caggcggttg gtgttgacga
      781 agacgacgtc ggccgccgga tcgatggcca ggccgcccca gttcacgccg ccgccggtca
      841 tcgggtagat gatcgtgccg cgctcgctcg gcggggtgaa gatgccctcg ttgcgcgccg
      901 cctcgatgcg gtgccggcag ccctcgcgct cgaacggggt cacgccccag gcatcgtccg
      961 gtgtgaggcg gatcggcccg agcggcggca agtcggccgg gaagggctgg gtcgccgaca
     1021 ggacctcgcc ggccacgccg ccctgcggca ccggccgctc ctcgaccggc aacagcggcc
     1081 gtcccgaatc gcgatcgagg acgaacagca ggccggtctt ggtgccctgg atcaccgccg
     1141 cgcggcgctg acctccgaca tcgatcgagg cgagcgcggg cgccgaagcg acgtcgtagt
     1201 cccagacgtc gtggtgcacg gtctggaagt gccagacgcg ctcgccggtc tgcgcattca
     1261 acgccaccac cgaatccgca tagaggttac tcccgggacg caggccgccg tagaaatccg
     1321 ggctcgggct cgatgtcggc agcaacacga ggccgcgcgc ttcatccgcc gacatcggcg
     1381 cccagacgtt ggcgctgccg ctggtctgcc agccgtcgcc ccacgtggca ctcgccgggt
     1441 cggacgcctc gtgggggatc ggatcccact gccagctcaa tgcgccggtg cgcgcatcga
     1501 acgcgcgcac cgtgccgcgc ggagagccga cgcgctggtt gtcggcgatc gacgacccga
     1561 cgatgacgcg gccgcggacc accacggggg ccgaggtgat ctgcagttcc cagcggccga
     1621 gcaggtcgat gccggccctg atctgcacct ggccgtgatc gccgaaatcc tggcacggca
     1681 ggccggtggc gagatccagt gcgatcaggc gcgcgtcgtt cgtcgccgtg aagacgcgcc
     1741 cggcacacgt gccgccgcgg gcttgcgggt cgctccagac ggcgacgccg cggcagttga
     1801 acaggttggc cggtcggtag tcggtgcgca gtttggagtc gtagcgccag agctgcgcgc
     1861 cggtcccggg gtcgagggcg atcacctcgt tgaacggcgt gcagacgagc agcttgtcgc
     1921 cggccaggat cggtgtgacc tggaacttgg agcggcgcat cgtcagcgtg tcgcgacgct
     1981 cgaggtcgcc ggtgtggaac gtccaggcgt tgacgagttc ggagacgttg gcgcgcgtga
     2041 tctgggcgag gggtgaatga ccggtcgtcg tggcaccggc gttcggtccg gctgccggat
     2101 caggctgcgc agcggactgc gcgcaggtca ggctcgtggc aacgatgaag acggcgccgg
     2161 gtgtccaccg actcgaagtg cttgtgcgga tggaacgcga ggactgcatg ggtcgcttca
     2221 ggacacccgc acgcccagtt cgtgcaggcg cccgaccagc gccgcatcga gtccgtcgac
     2281 ggccggcgtg agcaccgcgt gccgcgccgc ctcgacggtg cgccggagcg tcgcggcatg
     2341 cggcagcacg gtgccgtaga agcgcagcgt ctcgcctcgt gcgatcagca gggtcgggaa
     2401 gttctcgacg tcgagggcga gcgggccgag cgcgtcgctg tcgtcttcga tgtcgatcca
     2461 ggcgaagcga aagtccgggc gctcgcgcgc cagcgcttcg aaggttccgc ggtagtcgcc
     2521 gcaggtgtgg caccaggcgg cgcacaggca agctaccagc caggggccgt cgctgccggc
     2581 gcggggcgat tcgtcgtgca tgcccgtcag tgtgcctgcg cgcggcggcc tgcgatcgtc
     2641 aaagcagttc gagcgtgcgc ttgtccacgt gtccgccgaa gtacttgtcc agcgcccatc
     2701 ggaacaccgg ctcgtcgcgc gcgacctgcg caaacagcgt catcgacgag ctgaacttca
     2761 ggtcgtccgg cgagccgaag atctgcagcg ccgttctgcc ttcgacggcg agcacgagtt
     2821 cgctgcattc cttcagccgg gcgccgagca ccgggtggcg ccagtacgct tcggcctcgg
     2881 cgcgcgaggc gatgccgaaa tgccgcgccg tggcgctgcg gcccagcccc ttcaactgcg
     2941 ggaacacgaa c
//
LOCUS       DASVHM010000324         2848 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_673343, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000324 DASVHM010000000
VERSION     DASVHM010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_673343"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..181)
                     /locus_tag="VF308_06130"
     CDS             complement(<1..181)
                     /locus_tag="VF308_06130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007866652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HEX7436265.1"
                     /translation="MTPLKEQARKRQPVYRNIHISQLTSYRLPLAGWVSILHRISGAA
                     MFVLLPFAIWMFDTSL"
     gene            272..1258
                     /locus_tag="VF308_06135"
     CDS             272..1258
                     /locus_tag="VF308_06135"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016615 - malate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEX7436266.1"
                     /translation="MMKSPVRVAVTGAAGQIGYALLFRIAAGEMLGKDQPVVLQMLEI
                     PDEKAQKGLKGVMMELDDCAFPLLAGMSAHGDPMTAFKDADYALLVGARPRGPGMERK
                     DLLSANAQIFTGQGKALNAVASRKVKVLVVGNPANTNAWIAMKSAPDLPRRNFTAMLR
                     LDHNRAASQIAARTGKPVAAIEKLVVWGNHSTTMYPDYRFATIDGKPVKAMVNDEAWN
                     RDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWALGSNGKWVTMGIASDGQYG
                     VPKDTMFGFPVTTADGEYQVVDGLAIDDFSRERINLTLKELQEEQDGVKHLV"
     gene            1430..1963
                     /locus_tag="VF308_06140"
     CDS             1430..1963
                     /locus_tag="VF308_06140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436267.1"
                     /translation="MSTRFFRCAPAVAALIACSFCAASAIAADAPAKAAKPAAKGKAA
                     PAPAVFTVPDAQPDQVKAAEMVFYGPYECEFQQTVNIVQSQKYSGYVDVKHGKKDWLM
                     KPVLSSTGAIRLEDVRGETLMVQIASKSMLLNVKTAQRIVDDCVSPKQREMIAEAKAA
                     KAAAEAGAGTATTSLLK"
     gene            2065..>2848
                     /gene="serC"
                     /locus_tag="VF308_06145"
     CDS             2065..>2848
                     /gene="serC"
                     /locus_tag="VF308_06145"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEX7436268.1"
                     /translation="MTRPFNFSPGPAVLPEPVLRQAAAEMLDWHGTGMSVTEMSHRGK
                     EFMSIYHAAQASLRELLAIPDDYKLLFLQGGAIGQNAIVPMNLLRGKDRADYVNTGDW
                     SKRSIAEAEHFCKVNVAASAEGSGFTAIPPQSEWRLDPGAAYVHICSNETIIGLEYHW
                     TPDTGAVPLVADMSSDILSRPIDVSRYGLIYAGAQKNIGPAGLTLVIVRDDLLGGALP
                     TTPSAFNYQVQAANDSMINTPPTFAIYLAGLVFDWIREQGGLA"
BASE COUNT          501 a         1012 c          922 g          413 t
ORIGIN      
        1 tcaggctggt gtcgaacatc cagatcgcga acggcagcaa cacgaacatc gccgcgccgc
       61 tgatgcgatg caggatcgag acccagccgg ccagcggcaa ccggtacgac gtcagctggc
      121 tgatgtggat gttgcgatag accggctgcc gcttccgagc ttgttctttg aggggggtca
      181 tgtcgatcgt gattttctgc gcgcgcgcgg gcagccggcc gatattattg caacgcagca
      241 gactttaacc cgcccaaccc ccggagaacc catcatgaag tcccccgtcc gcgtcgcggt
      301 gaccggcgcc gccggccaga tcggctatgc cctgctcttt cgaatcgccg cgggcgagat
      361 gctcggcaag gaccagccgg tcgtcctgca gatgctcgag atccccgacg agaaagcgca
      421 gaagggcctc aagggcgtga tgatggagct cgacgactgc gccttcccgc tcctcgccgg
      481 aatgagcgcg cacggcgatc cgatgaccgc gttcaaggac gccgactacg ccctcctcgt
      541 cggcgcccgg ccgcgcggcc ccggcatgga gaggaaggac ctgctctcgg ccaacgcgca
      601 gatcttcacc ggccagggca aggcgctcaa cgccgtcgcc tcgcgcaagg tcaaggtgct
      661 cgtcgtcggc aacccggcca acaccaacgc gtggatcgcg atgaagagcg cgcccgacct
      721 gccgcgcagg aacttcaccg cgatgctgcg tctcgatcac aaccgcgccg ccagccagat
      781 cgccgccagg accggcaagc ccgtggcagc gatcgagaag ctcgtcgtct ggggcaacca
      841 ctcgacgacg atgtatcccg actaccgctt cgcgacgatc gacggcaagc ccgtcaaggc
      901 gatggtcaac gacgaggcct ggaaccgcga cgtcttcctg ccgaccgtcg gcaagcgcgg
      961 cgctgcgatc atcgaggcgc gcggcctgtc gtcggcggcg tcggctgcca acgcggcgat
     1021 cgaccacgtg cgcgactggg cgctcggctc gaacggcaag tgggtgacga tgggcatcgc
     1081 gtccgacggc cagtacgggg tcccgaagga cacgatgttc ggcttcccgg tcacgaccgc
     1141 cgacggcgag taccaggtcg tcgacggcct ggcgatcgac gacttcagcc gcgagcggat
     1201 caacctgacg ctgaaggaac tccaggaaga gcaggacggc gtcaagcacc tcgtctaggc
     1261 gcaaacgcgg cgcgtcttcg cacgcgccgc gagcgctggc gcggacgccg cgccggtccg
     1321 ggcgtgacgc atttcccggc gcgcccgtaa cgaccggtaa acccggcgcc gcgggccggg
     1381 cgccgcagca caatcagcgc cgatcgttgc cgcctgaaag gtcatcgcca tgtcgactcg
     1441 tttcttccgc tgcgcgcccg ccgtcgccgc gctgatcgcc tgctcgttct gcgccgcttc
     1501 ggcaatcgcc gccgacgccc ccgcgaaggc ggccaagccc gctgccaagg gcaaggccgc
     1561 gcccgcgccg gccgtcttca ccgttcccga tgcccagccc gaccaggtca aggccgccga
     1621 gatggtgttc tacggcccct atgaatgcga gttccagcag accgtcaaca tcgtgcagag
     1681 ccagaagtat tcaggctacg tcgacgtcaa gcatggcaag aaggactggc tgatgaagcc
     1741 ggtgctgtcg tcgaccggag cgatccgcct cgaggacgtt cgcggcgaga cgctgatggt
     1801 gcagatcgcg agcaagtcga tgctcctcaa cgtcaagacc gcgcagcgaa tcgtcgacga
     1861 ttgcgtcagc ccgaagcagc gcgagatgat cgccgaagcc aaggcggcca aggcggctgc
     1921 tgaggcggga gcgggcacgg cgacgacgtc gctcctgaag tagcgcgccg gccaccgcaa
     1981 attcgagccg acggcgcgcc ctgcggggcg cgtcgccgtt tctgcgccgc ccttcgccgc
     2041 gatcgccggc tcgataatcg gcgcatgacg cgccccttca acttcagtcc cggccccgcc
     2101 gttcttcccg agccggtcct gcgccaggcg gccgccgaaa tgctcgactg gcacggcacc
     2161 ggcatgtcgg tgacggagat gagccatcgc ggcaaggagt tcatgtcgat ctaccacgcc
     2221 gcgcaggcgt cgctgcgcga gctgctcgcc atccccgacg actacaagct gctcttcctg
     2281 cagggcggcg cgatcggcca gaacgcgatc gtgccgatga acctgctgcg cggaaaggac
     2341 cgcgccgact acgtcaacac cggcgactgg tcgaagcggt cgatcgccga ggccgagcac
     2401 ttctgcaaag tcaacgtcgc cgccagcgcc gagggcagcg gcttcaccgc gattccgccg
     2461 cagagcgaat ggcgcctcga tcccggtgcc gcctacgtcc acatctgctc gaacgagacg
     2521 atcatcggcc tcgagtacca ctggacgcct gacaccggcg ccgtgccgct ggtcgccgac
     2581 atgtcgtcgg acatcctgtc gcggccgatc gacgtctcgc gctacggcct gatctacgcc
     2641 ggcgcgcaga agaacatcgg cccggcgggg ctgacgctcg tcatcgtccg cgacgatctc
     2701 ctcggcggcg ccctgccgac gacgccgagc gccttcaact accaggtcca ggcggccaac
     2761 gactcgatga tcaacacgcc accgacgttc gcgatctacc tcgccggcct ggtcttcgac
     2821 tggatccgcg agcagggcgg cctggcgg
//
LOCUS       DASVHM010000325         6305 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1106461, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000325 DASVHM010000000
VERSION     DASVHM010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6305
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1106461"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..443
                     /locus_tag="VF308_06150"
     CDS             <1..443
                     /locus_tag="VF308_06150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436269.1"
                     /translation="LELKSVTASVFFSSDVANPDTYQKFWCDIQMYTTTMTATDAERF
                     MDQYKSDEVSQKANKWQGRNICRWVNPEYDKLNAAASAELDPVKRAAMYIKMNDMVVN
                     DFVVIPLISRPRVRGGNLKLVTTLSGWDLDFSALQNWYRESSPG"
     gene            518..2299
                     /locus_tag="VF308_06155"
     CDS             518..2299
                     /locus_tag="VF308_06155"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7436270.1"
                     /translation="MQEEVLRALVDDVRAGRTDRRAFVARLAGLGLSAPFASLLLASA
                     GVAQAQPATYKPTRRGGGGALKLLFWQGPTLLNPHFGIGAKDQEGSALFYEPLARYDP
                     DGNLVPVLAAEIPSRANGGIAADGRSTVWKLKKGVRWHDGRPFTADDVVFNFAYATDP
                     KTAATTVASYEGIASATQIDAETVRFEFQKPTPLWHRSATVALVPKHLFEAFGGARSR
                     DAPANLRPVGTGPYRFVDFKPGDLLRGEIHRDYHAPNRPHFDSVELKGGGDATSAARA
                     VLQTGEYDFAWNLQVEDDVLTRMEASRKGRVVACPSGDVEVIQINHADPQVEVDGERS
                     SPKSRHPILSDGAVREALTLLLDRKSIQSFVYGRAGVATPNFVNNPARYNSPNVKGEF
                     SIERANAVLDAAGWKRGGDGIREKDGRRLKLLFQTSINSVRQKVQNIYKQACAKAGIE
                     LELKAVTAAVFFSSDLANPDTYGKFLADLQMYAVAGRPPDPGVFMQWFVSWQATGKAN
                     KWQGVNRGRWRNDEYDHLFRASEAELDPVKRTALLIAMNDLICREHAIIPVVYRPSMY
                     GVARQLVAPLSGWDTALSSIAEWYAEA"
     gene            2315..3274
                     /locus_tag="VF308_06160"
     CDS             2315..3274
                     /locus_tag="VF308_06160"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436271.1"
                     /translation="MGHYLLRRLLIALPSLLGISVVLFTVLALAPGDPFSEMALNPNV
                     PPEVQANLRRQFGLDDPVWQRYFRWLIAMFHGDWGFSFISRVDVDKLILGRLPVTLAV
                     IGASQILALMIALPVGIYSAARPYSWFDRIASTLAFVGFSLPTFFTGLLLILLFSIKL
                     DWLPFVFRADISGTGWDWWWQHIKQAIMPVLVLGLFQGASWTRYVRSAMLDVIRLDYV
                     TTARSKGLREYAVIMKHVVRNALIPVVTLVALTMPQVFGGAIVTEQIFRVPGIGSLLI
                     DAILRNDTPVIMAVTFVFSCLVILFNLIADLLYGWLDPRISYR"
     gene            3279..4178
                     /locus_tag="VF308_06165"
     CDS             3279..4178
                     /locus_tag="VF308_06165"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436272.1"
                     /translation="MLAAPRLRNVSPAAEAWRRFRRHRLAVLGLIVLTVMVLMVAFGP
                     LLWKVAINDIDFTARLHTPTANHPFGTDDLGQDIFARMLYGGRISLAVGLAAMLMAML
                     VGVTVGAIAGISRGAVDAALMWVTDLFLSLPQLPLLLILIYLFRDALKQAFGPEVGVF
                     ILIVLVIGGFRWMPVARLVRAQFFSLREKEFVEAARALGASVPRQVVRHILPNSLGPV
                     IVAGTIDVAAAIIAESTLSFLGLGFPPDIPTWGRILYDSKEYLDIAPHWALFPGTAIF
                     LAVLCINFVGDGLRDALDPRRVL"
     gene            4255..5331
                     /locus_tag="VF308_06170"
     CDS             4255..5331
                     /locus_tag="VF308_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436273.1"
                     /translation="MPAPLRPILMTSPSRSAAKRGELVEEVALLQIKGLKTHFKTDDG
                     WLHAVDGVDLTINRGETVCVVGESGCGKTVTAMTVLKLLPMPPGKIAAGQVLWKGRDL
                     VTASTDEMRRVRAKEIAIVFQEPMTSLNPVYSVGEQIAESLRLHEGLGRKAAMDRAVE
                     MLALVRIPTPQRRVDDYPHQFSGGMRQRVMIAIALACNPQLLIADEPTTALDVTIQAQ
                     ILDLLAELKERLGMAIMLITHAMGVVAEVAQRVVVMYAGMVVEEASVESLFANPRHPY
                     TQGLIRSIPRIDTAALHKVRLEQIPGTVPKLIEPGEGCRFAARCKYAVPECVAATPAL
                     REPVPGHKVRCIFDILPSGEKVLA"
     gene            5328..6302
                     /locus_tag="VF308_06175"
     CDS             5328..6302
                     /locus_tag="VF308_06175"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010103951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HEX7436274.1"
                     /translation="MNGPLLRVKDLVKRFPITGGWLGREVDNVHAVSGVSFDLMAGET
                     LGVVGESGCGKSTTGRCILRLIEPTSGEVWFEGKDVVHAGKDELRALARDMQIIFQDP
                     YASLNPRMTVGAIVGEALTIHKLTRNRAEYEARIVELLETVGLSADHMRRYPHEFSGG
                     QRQRIGIARALAVSPKLIVCDEAVSALDVSIQAQVINLLEDLQERFNLTYIFIAHDLS
                     VVEHISDRVAVMYLGRIVEIASAKRLYTQPLHPYTEALLSAVPIPDPKVKRKRIPLQG
                     DVPSPIRPPSGCHFHTRCPIARQPLCSTEKPELKQSSQGHWVACHLRG"
BASE COUNT          988 a         2216 c         2077 g         1024 t
ORIGIN      
        1 acctcgagct aaagtcggtc accgcgtcgg tattcttttc gtcggacgtg gccaaccccg
       61 acacctatca gaagttctgg tgcgacatcc agatgtacac gacgaccatg accgcgaccg
      121 acgccgagcg cttcatggat cagtacaagt ccgacgaggt ttcgcagaag gcgaacaaat
      181 ggcagggccg aaacatctgc cgctgggtca atcccgagta cgacaagctc aacgcggcgg
      241 cgtcggccga gctcgacccg gtcaagcggg ccgccatgta catcaagatg aacgacatgg
      301 tggtgaacga tttcgtcgtc atcccattga tcagccggcc gcgcgttcgc ggcggcaacc
      361 tgaagctggt gacgacgctg tcgggctggg acctcgactt ctcggcgctg cagaactggt
      421 accgggaatc gtcaccgggt tgaggcttcg cggcgcagcg ccggcctcgg ccgcgccgcg
      481 ccgccgaccc cgcgacagcg cgcccacagg accgccgatg caagaagaag tcctgcgggc
      541 gctggtcgac gatgtgcgcg ccggccgcac ggaccggcgc gctttcgtcg cccgcctggc
      601 cggcctcggc ctttccgcgc cgttcgcatc gctgctcctt gcatcggcag gagtcgcgca
      661 ggcgcagcct gcaacataca agccgacccg gcgcggcggc ggcggggcgc tgaagcttct
      721 cttctggcaa gggccgacac tgctgaaccc gcacttcggg atcggcgcga aggatcagga
      781 aggatcggcc ctcttctacg agccgctggc gcgctacgac cccgacggca atctcgtccc
      841 cgtgctcgcc gccgagatcc cgagccgtgc caacggcggc atcgccgccg acggccgctc
      901 gacggtgtgg aagctcaaga agggcgtgcg ctggcacgac gggcgtccgt tcacggccga
      961 cgatgtcgtc ttcaacttcg cctacgcgac cgacccgaag acggcggcga cgaccgtcgc
     1021 gtcgtacgaa ggcattgcgt cggcgaccca gatcgacgcc gaaaccgttc gcttcgagtt
     1081 ccagaagccg acgccgctct ggcaccgcag cgccacggtc gcgctcgttc cgaagcacct
     1141 gttcgaggcg ttcggcggcg cgcgctcgcg cgatgcgccc gccaacctgc gcccggtcgg
     1201 caccgggccg taccgcttcg tcgacttcaa gccgggcgac ctgctgcgcg gcgagatcca
     1261 ccgcgactac cacgcgccga accggccgca cttcgacagc gtcgagctga agggcggcgg
     1321 cgatgcgacc tcggcggcgc gcgccgtcct gcaaaccggc gagtacgact tcgcctggaa
     1381 cctgcaggtc gaagacgacg tgctgacgcg catggaagca agccgcaagg gccgcgtcgt
     1441 cgcgtgtccg agcggcgacg tcgaggtgat ccagatcaat catgccgacc cacaggttga
     1501 ggtggacggc gaacggtcga gcccgaagtc gcgccacccc atcctcagcg acggtgcggt
     1561 ccgcgaagcg ctgacgctgc tgctcgaccg caagagcatc caaagcttcg tctacggccg
     1621 cgccggcgtc gcgacgccga acttcgtcaa caacccggcg cgctacaaca gcccgaacgt
     1681 caagggcgag ttcagcatcg aacgcgccaa cgccgtgctg gatgcggcgg gctggaagcg
     1741 cggcggcgat ggcatccgcg agaaggacgg ccgcaggctc aagctgctgt tccagacctc
     1801 catcaactcg gtgcgccaga aggtgcagaa catctacaag caggcgtgcg cgaaggctgg
     1861 catcgagctc gagctgaagg cggtgacggc ggcggtgttc ttctcgtccg acctcgccaa
     1921 tcccgacacg tacggcaagt tcctcgccga cctgcagatg tacgccgtcg ccggccggcc
     1981 gcccgacccg ggcgtgttca tgcagtggtt cgtgtcgtgg caggccaccg gcaaggcgaa
     2041 caagtggcag ggcgtgaacc gcgggcgctg gcgcaacgac gaatacgatc acctgtttcg
     2101 agcgtccgag gccgagctcg atccggtcaa acgcacggcg ctcctgatcg cgatgaacga
     2161 cctcatctgc cgcgagcacg cgatcatccc cgtcgtctat cggccgtcga tgtacggcgt
     2221 cgcgcgccag ctcgtcgcgc cgctctcggg ctgggacacg gcgttgagca gcatcgccga
     2281 gtggtacgcg gaagcctgag cgacgggtcg aaccttgggt cactacctcc tgcgtcgtct
     2341 cctgatcgcc ctgccgagcc tgctcggcat cagcgtcgtg ctgttcaccg tgctcgcgct
     2401 cgcgccgggc gatccgttct cggagatggc gctcaacccg aacgtgccgc ccgaggtgca
     2461 ggccaacctg cgcaggcagt tcggcctcga cgatccggtc tggcagcgct acttccgctg
     2521 gctgatcgcc atgttccatg gcgactgggg cttctcgttc atcagccgcg tcgacgtcga
     2581 caagctgatc ctcggccgcc tgccggtgac cctggcggtg atcggcgcct cgcagatcct
     2641 cgccctcatg atcgccctgc cggtcggcat ctattcggcg gcgcggccct actcgtggtt
     2701 cgaccgcatc gccagcacgc tcgcctttgt cggcttctcg ctgccgacct ttttcaccgg
     2761 gctgctcctg atcctgctct tctcgatcaa gctcgactgg ctgccattcg tctttcgcgc
     2821 cgacatctca ggcaccggct gggactggtg gtggcagcac atcaagcagg cgatcatgcc
     2881 ggtgctcgtg ctcggcctgt tccagggcgc gagctggacg cgctacgtgc gctcggcgat
     2941 gctcgacgtg atccgcctcg actacgtcac caccgcgcgc agcaagggcc tgcgcgagta
     3001 cgcggtgatc atgaagcacg tcgtcaggaa cgcgctgatt ccggtcgtga ccctggtcgc
     3061 gctgaccatg ccgcaggtct tcggcggcgc catcgtcacc gagcagattt tccgcgtgcc
     3121 ggggatcggc tcgctgctca tcgacgcgat cctgcgcaat gacaccccgg tgatcatggc
     3181 ggtgacgttc gtcttctcgt gcctcgtcat cctcttcaac ctgatcgccg acctcctcta
     3241 tggctggctc gatccccgca tcagctaccg ctagcccggt gcttgccgcg ccgcgtctgc
     3301 gcaacgtctc gccggcggcc gaggcgtggc ggcgctttcg ccggcaccgg cttgccgtcc
     3361 tcggcctgat cgtcctcacc gtgatggtgt tgatggtcgc tttcgggccg ctgctctgga
     3421 aggtcgcgat caacgacatc gacttcacgg cgcgcctgca cacgccgacc gccaaccatc
     3481 cgttcggcac cgacgacctc ggccaggaca tcttcgcgcg catgctctac ggcggccgca
     3541 tctcgctcgc cgtcggcctg gcggcgatgc tgatggcgat gctcgtcggc gtgacggtcg
     3601 gcgccatcgc cggcatctcg cgcggcgccg tcgacgcggc gctgatgtgg gtcaccgacc
     3661 tgttcctgtc gctgccgcag ctgccgctgc tgctgatcct gatctacctg ttccgggacg
     3721 cgctcaagca ggccttcggc cccgaggtcg gcgtcttcat cctgatcgtg ctggtgatcg
     3781 gcggcttccg ctggatgccg gtggcgcgcc tggtgcgcgc acagttcttc tcgctgcgcg
     3841 agaaggagtt cgtcgaggcg gcgcgcgcgc tcggcgcctc ggtgccgcgc caggtcgttc
     3901 gccacatcct gcccaactcg ctcgggccgg tgatcgtcgc cggcacgatc gacgtcgccg
     3961 cggcgatcat cgccgagtcg acgctctcgt tcctcggcct cggcttcccg cccgacatcc
     4021 cgacctgggg ccggatcctc tacgacagca aggagtacct cgacatcgcg ccgcactggg
     4081 cgctgttccc gggcaccgcg atcttccttg ccgtgctctg catcaacttc gtcggcgacg
     4141 gcctgcgcga tgcgctcgat ccgcgccggg tgctctgatg ccggcgccgg gccgccccaa
     4201 gctggcatcg tccccctcgg ggggcgggcg cgaagcgacc tgggggcccc tctgatgccg
     4261 gcaccgctcc gtccgatcct gatgacgtcg ccttcgcgct cggccgccaa gcgcggcgag
     4321 ctcgtcgaag aggtcgcgct gctccagatc aagggcctga agacccactt caagaccgac
     4381 gacggctggc tgcacgcggt cgacggcgtc gacctgacga tcaatcgcgg cgagaccgtg
     4441 tgcgtggtcg gcgagtcggg ctgcggcaag acggtgacgg cgatgacggt gctgaagctg
     4501 ctgccgatgc cgccgggcaa gatcgccgcc gggcaggtgc tgtggaaagg ccgcgacctc
     4561 gtcaccgcga gcaccgacga gatgcgccgc gttcgcgcca aggagatcgc gatcgtcttc
     4621 caggagccga tgacctcgct caacccggtc tacagcgtcg gcgagcagat cgccgagagc
     4681 ctgcgcctgc acgaagggct cggtcgcaag gcggcgatgg atcgcgccgt cgagatgctc
     4741 gcgctggtac ggatcccgac gccgcaacgt cgcgtcgacg actacccgca ccagttctcg
     4801 ggcggcatgc gccagcgcgt gatgatcgcg atcgcgctcg cctgcaaccc gcagctgctg
     4861 atcgcggacg agccgacgac cgcgctcgac gtgacgatcc aggcgcagat cctcgacctg
     4921 ctcgccgagc tgaaggaacg cctcggcatg gcgatcatgc tgatcacgca cgcgatgggc
     4981 gtcgtcgccg aggtcgcgca gcgcgtcgtc gtcatgtacg ccggcatggt cgtcgaggag
     5041 gccagcgtcg agtccctgtt cgcgaacccg cgccacccgt acacgcaagg gctgatccgc
     5101 tcgatcccgc gcatcgacac cgcggcgctg cacaaggtcc ggctcgagca gatcccgggc
     5161 acggtgccca agctgatcga gcccggcgaa ggctgccgct tcgcggcgcg ctgcaagtac
     5221 gcggtgcccg agtgcgtcgc ggcgacgccg gcgctgcgcg agccggtgcc gggccacaag
     5281 gtgcgctgca tcttcgacat cctgccgagc ggcgagaagg tgctggcatg aacgggccgc
     5341 tcttgagggt gaaagacctc gtcaagcgat tcccgatcac cggcggctgg ctcggccgcg
     5401 aggtcgacaa cgtccatgcg gtaagcggcg tgagcttcga cctcatggcc ggcgagacgc
     5461 tcggcgtcgt cggtgagtcg ggctgcggca agagcaccac cgggcgctgc atcctgcgcc
     5521 tgatcgagcc gacctcgggc gaggtctggt tcgagggcaa ggacgtcgtc cacgccggca
     5581 aggacgagct gcgcgcgctg gcgcgcgaca tgcagatcat cttccaggat ccgtacgcgt
     5641 cgctcaaccc gcgcatgacg gtcggcgcga tcgtcggcga ggcgctgacg atccacaagc
     5701 tcaccaggaa ccgcgccgag tacgaggcgc gcatcgtcga gctgctggag acggtcggcc
     5761 tcagcgccga ccacatgcgc cgctatccgc acgagttctc gggcggccag cgccagcgca
     5821 tcggcatcgc gcgggcgctc gcggtgagcc caaagctaat cgtctgcgac gaggcggtgt
     5881 cggcgctcga cgtctcgatc caggcgcagg tgatcaacct gctcgaggac ctgcaggagc
     5941 gcttcaacct cacctacatc ttcatcgccc acgacctgtc ggtggtcgag cacatcagcg
     6001 atcgcgtcgc cgtgatgtac ctcggccgaa tcgtcgagat cgcgtcggcg aagcgcctct
     6061 acacgcagcc gctgcatccg tacaccgaag cgctgctgtc ggcggtgccg atcccggatc
     6121 cgaaggtgaa gcgaaagcgc atcccgctgc agggcgacgt gccgagcccg atccggccgc
     6181 cttcaggctg ccacttccat acgcgctgcc cgatcgcgcg gcagccgctg tgcagcaccg
     6241 agaaaccgga gttgaagcaa agcagccagg ggcactgggt ggcttgtcac ctgcggggct
     6301 gagga
//
LOCUS       DASVHM010000326         5154 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1177069, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000326 DASVHM010000000
VERSION     DASVHM010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5154
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1177069"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..334)
                     /locus_tag="VF308_06180"
     CDS             complement(<1..334)
                     /locus_tag="VF308_06180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013123710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEX7436275.1"
                     /translation="MVERPSVAASVDSELPDDVVELPPRRRRKGIYILPNLFTLGALF
                     GGFYAVVMAMNGQFEQSAYGVFWAMVLDSLDGRVARMTNTQSTFGEQMDSLSDMVSFG
                     AAPALIAYE"
     gene            complement(346..1362)
                     /gene="ilvC"
                     /locus_tag="VF308_06185"
     CDS             complement(346..1362)
                     /gene="ilvC"
                     /locus_tag="VF308_06185"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011465596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEX7436276.1"
                     /translation="MKVYYDKDADLSLIKNKNVTIVGYGSQGHAHAQNLSDSGVRVTV
                     GLRKGGASWAKAEAAKLKVAEVGEAVKAADIVMMLLPDEQIASVYQAEVAPNIKQGAS
                     LAFAHGFNVHYGQVVPRADLDVWMVAPKAPGHTVRSTYVQGGGVPHLIAVHADKSGKA
                     RDLALSYAAANGGGKAGIIETNFREETETDLFGEQAVLCGGTVELIKAGFETLVDAGY
                     APEMAYFECLHELKLIVDLIYEGGIANMNYSISNNAEYGEYVSGPKIITDETRAAMRR
                     MLRDIQTGEYAKSFITENRAGAPTLLSKRRLMAEHPIEVVGEQLRAMMPWIKKNRLVD
                     QSRN"
     gene            complement(1388..1879)
                     /gene="ilvN"
                     /locus_tag="VF308_06190"
     CDS             complement(1388..1879)
                     /gene="ilvN"
                     /locus_tag="VF308_06190"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004630835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEX7436277.1"
                     /translation="MKHIIAVLLENEPGALSRVVALFSARGYNIETLTVAPTEDPSLS
                     RMTIVTTGSDEVIEQITKHLNRLIEVVKVVDLTEGAYTERELMLIKVRAVGKERDEMK
                     RMAEIFRGRIIDVTEKSYTVELTGAADKLDAFLQAIDRSVILETVRTGSSGIGRGERI
                     LRL"
     gene            complement(1876..3654)
                     /locus_tag="VF308_06195"
     CDS             complement(1876..3654)
                     /locus_tag="VF308_06195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 catalytic subunit"
                     /protein_id="HEX7436278.1"
                     /translation="METSAPPLKRTPATAATPTPAPAEPNGSEILVRCLQAENVRYLW
                     GYPGGAVLYIYDALYKQETIQHVLVRHEQAAVHAADGYARATGEVGVALVTSGPGVTN
                     AVTGIATAYMDSIPMVIVTGQVPTPAIGLDAFQECDTVGITRPIVKHNFLVKDVRELA
                     MTMKKAFHIARTGRPGPVVVDVPKDVSMTRAPFHYPASVEMRSYNPVKKGHGGQIRKA
                     AQLLLAAKRPYIYTGGGVVIGNAWAELRALVDLLGFPCTNTLMGLGAYPASDPKFLGM
                     LGMHGTYEANMTMQNCDVLLAVGARFDDRVIGNPKHFASVERKIIHIDIDPSSISKRV
                     RVDVPIVGDVKDVLLDLTAQIREAASKPDVKALSPWWAQINEWRKRDCLAYAKSPDVI
                     KPQQVVETLWELTKDRDTYITSDVGQHQMWAAQYYRFEEPRRWINSGGLGTMGVGLPY
                     AMGIKLAKPDAEVVCITGEGSIQMCIQELSTCLQYKTPIKIVSLNNRYLGMVRQWQQI
                     DYGGRYSHSYMDALPDFVKLAEAYGHVGIRIDKPSEVEPALREMLALKDRTVFLDVRT
                     DQTENVWPMVQAGKGITEMLLGSEDL"
     gene            3903..4472
                     /locus_tag="VF308_06200"
     CDS             3903..4472
                     /locus_tag="VF308_06200"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019652985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEX7436279.1"
                     /translation="MATDKELSDFLKSVEKRAWKRAVYAVRDDDAALDIVQDTMIRLS
                     EKYADRPAAELPLLFQRILSNATMDWFRRQKVRNQVVRNFSEFETAVGNDGDFDILET
                     LEALGGPLQSESAAESVSRAQILQMIEAEVALLPGRQREAFLLRYWEELDVAETAASM
                     GCSEGSVKTHCSRAVHALAKALKAKGITT"
     gene            4469..4903
                     /locus_tag="VF308_06205"
     CDS             4469..4903
                     /locus_tag="VF308_06205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3619 family protein"
                     /protein_id="HEX7436280.1"
                     /translation="MKTDSTYKNAAREAAESRFARSVVACLSESAETVAPDVAERLRF
                     AREKSLEIARRSRENTQDLGVTASGAAIAGFSQSRWWLRLASVLPLVALVGGLVLIQD
                     WQNRTQISVAAEVDEALLGDDLPINAYRDPGFSEFLKAAPSE"
     gene            4915..>5154
                     /locus_tag="VF308_06210"
     CDS             4915..>5154
                     /locus_tag="VF308_06210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436281.1"
                     /translation="MQREPTSERRALPLESARRAALRILACAALAACAASAVAQAPRP
                     AGAAPAAAPREDGVRWQALTPAQREALAPLERDWPG"
BASE COUNT          784 a         1705 c         1748 g          917 t
ORIGIN      
        1 attcgtatgc gatcaaggcc ggcgcggcgc cgaacgagac catgtcggag aggctgtcca
       61 tctgctcgcc gaaggtgctc tgggtgttgg tcatgcgcgc gacgcggcca tcgaggctgt
      121 cgagcaccat cgcccagaag acgccgtacg ccgattgctc gaactgtccg ttcatcgcca
      181 ttacgacggc gtagaaaccg ccgaacagcg ctccgagcgt gaacaagttg ggcaggatgt
      241 agatgccctt cctgcgccgc cgcggcggca gctcgacgac gtcgtcgggc agctcgctgt
      301 cgacggaggc ggcgacgctc gggcgctcga ccatcgaagc cggcctcagt tgcgcgactg
      361 gtcgacgagc cggttcttct tgatccacgg catcatcgcc cgcagctgct cgccgacgac
      421 ctcgatcggg tgctcggcca tcaggcggcg cttggagagc agcgtcggcg cgccggcgcg
      481 gttctcggtg atgaagctct tcgcgtactc gccggtctgg atgtccctga gcatccttct
      541 catcgccgcc cgcgtctcgt cggtgatgat cttcggccca gacacgtact cgccgtactc
      601 ggcgttgttc gagatcgagt agttcatgtt ggcgatgccg ccctcgtaga tcaggtcgac
      661 gatgagcttc aactcgtgca ggcattcgaa gtaggccatc tccggcgcgt agcccgcatc
      721 gacgagcgtc tcgaagccgg ccttgatcag ctcgacggta ccgccgcaga ggacagcctg
      781 ctcgccgaac aggtcggtct cggtctcctc gcggaagttg gtctcgatga tgccggcctt
      841 gccgccgccg ttcgccgcgg cgtagctgag cgcaaggtcg cgcgccttgc cggacttgtc
      901 ggcgtgcacg gcgatcaggt gcggcacgcc gccaccctgg acgtaggtcg agcgcacggt
      961 gtggccgggc gccttcggcg cgaccatcca gacgtcgagg tcggcgcgcg gaacgacctg
     1021 gccgtagtgg acgttgaagc catgcgcgaa cgcgagcgac gcgccctgct tgatgttcgg
     1081 cgcgacctcg gcctgataga ccgaagcgat ctgctcgtcg gggagcagca tcatgacgat
     1141 gtcggcggcc ttgaccgcct cgccgacctc ggcgaccttg agcttggccg cttcggcttt
     1201 cgcccaagag gcgccgccct tcctcagccc gacggtgacg cggacgccgc tgtcggagag
     1261 gttctgcgca tgggcatggc cctgcgagcc gtagccgacg atggtcacgt tcttgttctt
     1321 gatcaggctc aggtcggcgt ctttgtcgta gtagaccttc attcgtttct ccgtggattc
     1381 agggttctta gaggcggagg atccgctcgc cgcggccgat gccgctcgag ccggtgcgaa
     1441 ccgtctcgag gatgacgctg cgatcgatcg cctgcaggaa ggcgtcgagc ttgtcggcgg
     1501 cgccggtcag ctcgacggtg tagctcttct cggtgacgtc gatgatgcgg ccgcggaaga
     1561 tctcggccat gcgcttcatc tcgtcgcgct ccttgccgac ggcgcgcacc ttgatcagca
     1621 tcagctcgcg ctcggtgtac gcgccctcgg tgaggtcgac gaccttgacc acctcgatca
     1681 ggcggttcag gtgcttggtg atctgctcga tgacctcgtc ggaaccggtc gtgacgatgg
     1741 tcatccgcga cagcgacgga tcctcggtcg gcgcgaccgt gagcgtctcg atgttgtagc
     1801 cgcgcgccga gaaaagcgcg acgacccgcg acagcgcgcc gggctcgttt tcgagcagca
     1861 ccgcgatgat gtgcttcaca gatcctccga tccgagcagc atctcggtga tccccttgcc
     1921 ggcctgcacc atcggccaga cgttctcggt ctggtcggtg cggacgtcga ggaagacggt
     1981 gcggtccttc agggcgagca tctcgcgcag cgccggctcg acctcgctcg gcttgtcgat
     2041 gcggatgccg acgtgaccgt aggcctcggc gagcttgacg aaatcgggca gcgcgtccat
     2101 gtagctgtgc gagtagcggc cgccgtagtc gatctgctgc cattgccgca ccatgccgag
     2161 gtagcggttg ttgagcgaga cgattttgat cggcgtcttg tactgcaggc aggtcgagag
     2221 ctcctggatg cacatctgga tcgagccttc gccggtgatg cagacgacct cggcgtcggg
     2281 cttggcgagc ttgatgccca tcgcgtacgg caggccgacg cccatcgtgc ccaggccgcc
     2341 ggaattgatc cagcggcgcg gctcctcgaa gcggtagtac tgcgccgccc acatctggtg
     2401 ctggccgacg tcggaggtga tgtaggtgtc gcggtccttg gtcagctccc agagcgtctc
     2461 gacgacttgc tgcggcttga tgacgtcggg gctcttcgcg taggccaggc agtcgcgctt
     2521 cctccactcg ttgatctgcg cccaccacgg cgagagcgcc ttgacgtcgg gcttcgacgc
     2581 cgcctctcgg atctgcgcgg tcaggtcgag cagcacgtcc ttgacgtcgc cgacgatcgg
     2641 cacgtcgacg cggacgcgct tggagatcga cgacgggtcg atgtcgatgt ggatgatctt
     2701 cctctcgacc gacgcgaagt gcttcgggtt gccgatgacg cggtcgtcga aacgggcgcc
     2761 gacggcgaga aggacgtcgc agttctgcat cgtcatgttc gcttcgtagg tgccgtgcat
     2821 gccgagcatg ccgaggaact tggggtcgct cgccggatag gcgccgaggc ccatcagcgt
     2881 gttggtgcac gggaagccga gcaggtcgac gagcgcgcgc agctcggccc aggcgttgcc
     2941 gatgacgacg ccgccgccgg tgtagatgta gggccgcttg gcggccagca acagctgcgc
     3001 cgccttcctg atctggccgc cgtggccctt cttcaccggg ttgtacgagc gcatctcgac
     3061 gctcgccggg tagtggaacg gcgcgcgcgt catcgacacg tccttcggca cgtcgacgac
     3121 gaccgggccg ggtcggccgg tgcgggcgat gtggaacgcc ttcttcatcg tcatcgcgag
     3181 ttcgcggacg tccttgacga ggaagttgtg cttgacgatc ggccgcgtga tgccgaccgt
     3241 gtcgcactcc tggaaggcgt cgaggccgat cgccggcgtc ggcacctggc cggtgacgat
     3301 caccatcggg atcgaatcca tgtacgcggt ggcgatgccg gtgaccgcgt tcgtcacccc
     3361 cggcccggaa gtcacgagag cgactccgac ctcgccggtg gctcgcgcgt agccgtcggc
     3421 ggcgtggacc gcggcctgct cgtgacgaac caggacgtgc tggatcgtct cctgcttgta
     3481 gagcgcgtcg tagatgtaga ggacggcacc gcccggatag ccccagaggt agcggacgtt
     3541 ttccgcctgc aggcagcgga ccaggatctc ggagccgttc ggctcggcgg gggcgggagt
     3601 gggcgtggcg gccgtggcag gcgtgcgctt cagcgggggc gctgaggttt ccatgatctt
     3661 cacctctgtg aatttctctg acgaaaaacc atcggtgcac ctttcctcgc cctcgtgagg
     3721 cgggtgcggt gcctgagccg atcgccgaag accgccgcgc ttcgggcggc cggacgatcg
     3781 aaaactgtcg tgcaacccgt aattatcgca tcggccggcg ccccttccca cgccgcccgg
     3841 cgcgcagaaa tgccgatgtg ataatcgcgc cgccccgagc tgctgcaact ggcgcgcttt
     3901 ccttggcgac cgacaaagaa ctttccgatt tcctgaaaag cgtcgagaaa cgagcctgga
     3961 agcgggccgt ctacgccgtc cgcgacgacg acgccgcact cgacatcgtt caggacacga
     4021 tgatccggct ctcggaaaaa tacgccgacc gccctgccgc cgagctgccg ctgctgttcc
     4081 agcgcatcct ctcgaacgcg acgatggact ggttccggcg ccagaaggtc cgaaaccagg
     4141 tcgtgcgcaa tttctcggaa ttcgaaacgg cggtcggcaa cgacggcgac ttcgatattc
     4201 tcgaaaccct cgaagcgctc ggcgggccgc ttcagtccga gagtgccgcg gagtcggttt
     4261 cccgggcgca gatcttgcaa atgatcgagg ccgaggtggc gctcctgccc ggccgtcaac
     4321 gcgaggcctt tctcctgcgt tactgggagg aactcgatgt cgccgagacc gccgcctcga
     4381 tggggtgttc cgaagggagc gtcaagacgc actgctcgcg ggccgtgcat gccttggcga
     4441 aggccctgaa ggcgaaggga ataacgacat gaagaccgac agcacgtaca agaacgcagc
     4501 ccgcgaggcg gcggagtcgc gcttcgcgcg cagcgtcgtc gcgtgcctga gcgaaagcgc
     4561 cgagacggtc gctcccgacg tcgccgagcg cctccgcttc gcccgcgaga agtcgctcga
     4621 gatcgcgcgc cgctcgcgcg agaacaccca ggatctcggc gtcaccgcct ccggcgcggc
     4681 catcgccggc ttcagccagt cgcgctggtg gctccgcttg gcctcggtcc tgccgctggt
     4741 cgccctggtc ggtggcctgg tcctgatcca ggactggcag aaccggaccc agatctcggt
     4801 cgccgccgag gtcgacgagg ccctcctggg cgacgaccta ccgatcaacg cctatcgcga
     4861 tcccggtttc tcggagttcc tgaaggcagc cccgagcgaa tgaggcgggc ggcaatgcag
     4921 cgcgagccga cctccgagcg ccgcgccctg cccctcgaat ccgcgcggcg agccgcgctc
     4981 cggatccttg cctgcgcggc cctcgcggcg tgcgccgcat ccgccgtcgc gcaagcaccc
     5041 cgccccgctg gcgccgcccc ggcggctgcg ccgcgcgagg acggggtccg ctggcaggcg
     5101 ctgacgccgg cgcagcgcga ggcgctggcg ccgctcgagc gcgactggcc cggc
//
LOCUS       DASVHM010000327         7195 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_22886, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000327 DASVHM010000000
VERSION     DASVHM010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7195
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22886"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..126
                     /locus_tag="VF308_06215"
     CDS             <1..126
                     /locus_tag="VF308_06215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HEX7436282.1"
                     /translation="IAVGEDFRAGRWWWEAEGAKECGLHLSPVAPDPASALKATA"
     gene            123..1094
                     /gene="cysD"
                     /locus_tag="VF308_06220"
     CDS             123..1094
                     /gene="cysD"
                     /locus_tag="VF308_06220"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0019419 - sulfate reduction [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HEX7436283.1"
                     /translation="MNAPLSSLQLLPEIDHSHLDWLEEEAIFILRETAAAFERPALLF
                     SGGKDSCVVLRLAEKAFKRRARHDPSGAQFEGRLPFPLLHVDTGHNFAEVIEFRDRRV
                     AEMGERLVVGHLEDSIARGSVRLAHPLESRNGHQTVALLEAIEEHRFDVLIGGARRDE
                     EKARAKERIFSHRDGFGQWQPKEQRPELWTLFNTRIKPGEHMRAFPISNWTELDVWLY
                     IERERIPLPGLYYAHEREVVRRKGLLVPVTEVTPVRPGETVESVEVRFRTVGDMTCTC
                     PVESSATNAAEVVAETLLVTISERGATRMDDRTSDASMERRKKEGYF"
     gene            1094..2380
                     /locus_tag="VF308_06225"
     CDS             1094..2380
                     /locus_tag="VF308_06225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEX7436284.1"
                     /translation="MAANRALRFLTAGSVDDGKSTLIGRLLFESQAILADQLDTLHAR
                     AAGEPIDLSLLTDGLEAEREQGITIDVAYRYFATKKRKFIIADAPGHEQYTRNMVTAA
                     AGSDAAVVLVDITKLDLGARPVALLAQTRRHTLLAQLLRVPGIVFAINKVDAVAEPAE
                     AYAAVRDALHEFAAQAGIEVAGIVPVSALRGDNVTTPLDVPWYRGPSLLQLLESLPAA
                     EEEAAGDFSIPVQYVARQGARGETAAPDSGIGDQRRTFWGRIASGHVAPGDPVQIFPS
                     GERANVAELLVAGAEVDVATAEQSTGIVLDRQLDVSRGDWIATPGSVRATQRFHATLA
                     WLDTEPAVIGRKYQVRHGNRWVQARIAAIESRLDIQTLLPTEAHELGVNEIGRVVIET
                     QQPLPLAAYKTNRVAGALIVVDPTTNRTSGALLVED"
     gene            2385..3188
                     /gene="cobA"
                     /locus_tag="VF308_06230"
     CDS             2385..3188
                     /gene="cobA"
                     /locus_tag="VF308_06230"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018914406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HEX7436285.1"
                     /translation="MGRVIFIGAGPGAADLITVRGAQRLAGADVVLFDALTDPALHVY
                     APRARWIDVGKRGFSGVQHPPNRPPYDSTGQDTINALLVHHANQSDVVVRLKGGDPSI
                     FGRLEEELDALAAAGIDCEVIPGVTAAIAAAADTRRPLTRRGSGRSVSLTTAMTREGV
                     ITASRSADTEVFYMAGKQLGALARRLVAAGWAADTPASVVSRAGWPDPLHSDHSVQTL
                     ARATVIHAGRPTVVTVGAGAAPLAKRRSGAVEARGAAECGFGRAAPVKP"
     gene            3255..3578
                     /gene="fdxA"
                     /locus_tag="VF308_06235"
     CDS             3255..3578
                     /gene="fdxA"
                     /locus_tag="VF308_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin FdxA"
                     /protein_id="HEX7436286.1"
                     /translation="MTHVVLESCIRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCA
                     VCIPECPVNAIVPEEDVPGDQQHMTKLNAELAKVWPSITKRKAALPDADEWKDRTGKL
                     GELIR"
     gene            3575..4657
                     /locus_tag="VF308_06240"
     CDS             3575..4657
                     /locus_tag="VF308_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013901596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX7436287.1"
                     /translation="MRGEGVTPEVIQADAVVIGAGPVGLFQVFELGLLEIKAHVIDTL
                     AYPGGQCIELYPDKPIYDIPAVPVCTGRELTDNLLKQIAPFGATFHLGQEVTVVRKDE
                     NDPAGRFYVETAKGTRFLTKTLFVAGGMGSFQPRQLRLEGLDAYVDAQMFYRVRSPAQ
                     FAGKRLVIVGGGDSALDWTLNFAAEGPDQAAGITLVHRRDGFSAAPASVAKMKDLVAA
                     GRMDFLIGQPTGIEQSNGRLTGVRVTTPEDEVRMLPLDMLLVFFGLSPKLGPIAEWGL
                     GIDRKQLTVDTEKFETTVPGIFAVGDVNIYPGKKKLILSGFHEAALAAFGAATYVFPD
                     KRIHLQYTTTSTKLHKVLGVETPTFD"
     regulatory      4713..4828
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4879..7023
                     /locus_tag="VF308_06245"
     CDS             4879..7023
                     /locus_tag="VF308_06245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007839280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HEX7436288.1"
                     /translation="MAHRTELSSSPRALCAVALYAASGAWAQTPSTQLAPVTITGRAP
                     AAASVAGFGDVPLSKAPLQASVFSTEQLKDAGVQRLADLTRIDPALSDAYNSEGYIDY
                     LTVRGFVLDNRFNFRRDGLPINAETSIPLDNKARLEVLKGTSGIQSGTSAPGGLVNYV
                     VKRPLDAPLRSATLEWRQAGSVLGAVDLSQRFGESQAFGVRLNAALERIDPRLRDDRG
                     HRNLFALAGDWRLGSDTLIEAEVEQSHRSQPSQPAFSMLGNTVPAPADPRINLNNQPW
                     SLPVVFDATTASLRLQQRLNADWRITAHAATQQLRSDDRVAFPFGCTDTDGTYYADRY
                     CPSGNFDLYDYRSDNERRRLDALDMGLHGRFATGPLAHALSTGVLRSTVRIRTQAQAF
                     NFAGTGNVDGSAVTPPAPDAITPGTNRDERSTELYLRDAVTVTERLTAWLGLRHSRLE
                     RQSVSTDGSAPTDYRQSFTTPWLAASYAFAPEHLVYASWGQGVESEVAPNQPRFINRG
                     QPLPALKSRQVEVGLKGATEKLAWSLTGFDIVRPVFDDVGPCDVDASCTHQLNGSERH
                     RGVEATGTLRAGAWTLDAGTQWLRARREGGQDGALNGLKPTNVPAFTLKLQTAYNVAS
                     VAGLTLRGGLVHESSRIVLPDNSTSIPGYSRFDAGARYETKMGEHTWTLRAGIDNLFD
                     KRAWKESPYQFGHAYLFPLAPRTLRLSMQVDL"
     gene            7056..7131
                     /locus_tag="VF308_06250"
     tRNA            7056..7131
                     /locus_tag="VF308_06250"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7089..7091,aa:Asn,seq:gtt)
BASE COUNT         1202 a         2620 c         2362 g         1011 t
ORIGIN      
        1 atcgccgtcg gcgaagactt ccgcgccggc cgctggtggt gggaagccga aggcgcgaag
       61 gaatgcggcc tgcacctgag cccggtcgcg cccgacccgg cctctgccct gaaagccacc
      121 gcatgaacgc gcccctcagc agcctgcagt tgttgcccga aatcgaccat tcgcacctcg
      181 actggctcga ggaggaagcg atcttcatcc tgcgtgaaac ggcagccgcc ttcgagcgcc
      241 cggcgctgct cttttcgggc ggcaaggatt cgtgcgtggt gctgcgcctg gccgaaaagg
      301 cgttcaagcg ccgcgcccgc cacgacccca gcggcgcgca gttcgaaggg cgcctgccct
      361 tcccgctcct gcatgtcgac accggccaca actttgccga ggtgatcgag ttccgcgatc
      421 ggcgcgtcgc cgaaatgggc gagcgcctcg tcgtcggcca cctcgaggat tcgatcgcgc
      481 gcggcagcgt gcgcctggcc catccgctcg aatcgcgcaa cggccaccag accgtggcgc
      541 tgctcgaagc gatcgaggag caccgcttcg acgtgctgat cggcggcgcc cggcgcgatg
      601 aggaaaaggc gcgcgcgaag gaacgcatct tctcgcaccg cgacggcttc ggccaatggc
      661 agccgaagga gcagcgcccc gagctctgga cgctcttcaa cacgcgcatc aagccgggcg
      721 agcacatgcg cgccttcccc atcagcaact ggaccgagct cgacgtctgg ctctatatcg
      781 agcgcgaaag gattccgctg cccggcctct actacgcgca cgagcgcgag gtggtgcgac
      841 gcaagggcct gctcgtgccg gtgaccgagg tcacgccggt gcggccgggc gaaacggtcg
      901 agagcgtcga ggtgcgcttt cgcaccgtgg gcgacatgac ctgcacctgc ccggtcgaaa
      961 gcagcgccac gaacgccgcc gaagtcgtcg ccgagaccct gctggtcacg atcagcgagc
     1021 gcggcgcgac gcgcatggac gacaggacct ccgacgcttc gatggagcgg cgcaagaagg
     1081 aaggctactt ctgatggccg cgaaccgcgc actgcgcttc ctcactgccg gttcggtcga
     1141 cgacggcaag agcaccctga tcggccggct cctcttcgag agccaggcga tcctcgccga
     1201 ccagctcgac acgctgcacg cgcgcgcggc cggtgagccg atcgacctgt cgctgctcac
     1261 cgacggcctc gaggccgagc gcgagcaggg catcacgatc gacgtcgcgt atcgctactt
     1321 cgcgaccaag aagcgcaagt tcatcatcgc cgacgcgccc ggccacgaac agtacacgcg
     1381 caacatggtc accgcggcgg cgggcagcga cgcggccgtg gtgctggtcg acatcaccaa
     1441 gctcgacctc ggcgcgcggc cggtcgcgct cctggcgcag acgcgccgcc acacgctgct
     1501 cgcgcagctg ctacgcgtgc cgggcatcgt cttcgcgatc aacaaggtcg acgccgtcgc
     1561 cgaaccggcc gaagcctatg cggcggtgcg cgacgcgctg cacgagttcg cggcgcaggc
     1621 gggcatcgag gtcgccggca tcgtcccggt gtcggccctg cgcggcgaca acgtgacgac
     1681 cccgctcgat gtgccctggt accgcggccc ctcgctgctg cagcttctcg aaagcctgcc
     1741 ggccgccgag gaagaagcgg cgggcgactt ctcgatcccg gtgcaatacg tggcccggca
     1801 aggcgcacgc ggcgagaccg cggcgcccga cagcggcatc ggcgaccagc gccgcacgtt
     1861 ctggggtcgc atcgcgagcg gccacgtcgc gccgggcgac ccggtgcaga tctttccgag
     1921 cggcgagcgc gccaacgtgg ccgagctgct cgtcgccggc gccgaagtcg acgtcgccac
     1981 ggccgagcaa tcgaccggca tcgtcctcga tcgccagctc gacgtgtcgc gcggcgactg
     2041 gatcgcgaca ccgggttcgg tccgcgcgac gcagcgcttt catgccacgc tcgcctggct
     2101 cgacaccgag cccgccgtca tcggccgcaa gtaccaggtg cgccacggca accgctgggt
     2161 gcaggcgcgc atcgccgcga tcgagagccg gctcgacatc cagacgctcc ttcccaccga
     2221 ggcgcacgag ctcggcgtca acgagatcgg ccgggtcgtc atcgagaccc agcagccgtt
     2281 gccgctcgcc gcgtacaaga ccaaccgcgt cgccggggcg ctgatcgtcg tcgacccgac
     2341 gacgaaccgc accagcggcg cactgctggt cgaggactga gtcgatgggc cgcgtgatct
     2401 tcatcggcgc cgggccgggc gcggccgacc tcatcacggt gcgcggcgcg cagcgcctcg
     2461 ccggcgccga cgtggtgctg ttcgacgccc tcaccgaccc ggcgctgcac gtctacgcac
     2521 cgcgcgcgcg ctggatcgat gtcggcaagc gcggcttctc cggcgtgcag cacccgccca
     2581 accgcccgcc ctacgacagc accggccagg acacgatcaa cgccctcctc gtccatcacg
     2641 cgaaccagag cgacgtggtc gtgcgcctca agggcggcga cccgagcatc ttcggccgcc
     2701 tcgaggaaga gctcgacgcc ctggccgcgg ccggcatcga ctgcgaggtg atccccgggg
     2761 tcacggccgc gatcgccgcg gcggccgaca cgcgccgccc gctcacgcgc cgcggcagcg
     2821 ggcgcagcgt gagcctcacg accgcgatga cgcgcgaagg cgtcatcacc gcgagccgca
     2881 gcgccgacac cgaagtcttc tacatggccg gcaagcagct cggcgcattg gcgcgccgcc
     2941 tcgtcgccgc gggctgggcc gccgacacgc ccgcgagcgt agtctcgcgc gccggctggc
     3001 ccgacccact gcacagcgac cacagcgtgc agacgctcgc ccgggcgacc gtgatccacg
     3061 cgggccggcc gacggtcgtc acggtcggcg cgggcgcagc gccgctcgcg aagcgccgaa
     3121 gcggcgccgt cgaagcccga ggcgcagcgg aatgtggctt tggccgggca gcgccggtca
     3181 agccctaaaa tcgacttttc gcatgccccg ccgcggacgc cggcgcggcc gagtccacac
     3241 cagaagccac cttcatgacc cacgtcgttc tcgaatcgtg catccgctgc aaatacaccg
     3301 attgcgtgga tgtgtgcccc gtcgactgct ttcgcgaagg cccgaacttc ctcacgatcg
     3361 accccgacga atgcatcgac tgcgcggtct gcatccccga gtgcccggtc aacgcgatcg
     3421 tgcccgagga agacgtgccg ggcgatcagc agcacatgac caagctcaat gcggagcttg
     3481 ccaaggtctg gccgagcatc accaagcgca aggccgcgct gcccgatgcc gacgagtgga
     3541 aggatcgcac cggcaagctc ggcgaactga tccggtgagg ggcgaaggcg tgaccccgga
     3601 ggtcatccag gccgatgcgg tcgtcatcgg cgccggtccc gtgggcctgt tccaggtctt
     3661 cgagctcggc ctgctcgaga tcaaggcgca cgtgatcgac acgctcgcct acccgggcgg
     3721 gcaatgcatc gagctctatc ccgacaagcc gatctacgac attccggcgg tgccggtatg
     3781 caccggccgc gagctcaccg acaacctgct caagcagatc gccccattcg gcgcgacctt
     3841 ccatctcggc caggaagtga cggtcgtgcg caaagacgag aatgaccccg ccgggcgctt
     3901 ctatgtcgag accgcgaagg gcacgcgctt cctgaccaag accctcttcg tcgccggcgg
     3961 catgggctcg ttccagccgc gccagctgcg cctcgaaggg ctcgacgcct acgtcgatgc
     4021 gcagatgttc taccgggtgc gcagcccggc gcagttcgcc ggcaagcgtc ttgtcatcgt
     4081 cggcggcggc gattcggccc tcgactggac gctcaacttc gcggccgagg gcccggacca
     4141 ggccgccggc atcaccctcg tgcaccgccg cgacggcttc tcggcggcgc cggcgagcgt
     4201 cgcgaagatg aaggacctgg tcgcggccgg gcgcatggac ttcctcatcg gccagccgac
     4261 cggcatcgag caatcgaacg ggcggctcac cggcgtgcgg gtgacgacgc ccgaagacga
     4321 agtccggatg ctgccgctcg acatgctgct ggtcttcttc ggcctcagcc cgaagctcgg
     4381 gccgatcgcc gaatgggggc tcggcatcga caggaagcag ctcaccgtcg acaccgagaa
     4441 gttcgagacc accgtccctg gcatcttcgc ggtcggcgac gtcaacatct accccggcaa
     4501 gaagaagctg atcctgtccg gcttccacga ggccgcgctt gccgcgttcg gcgccgcgac
     4561 ctacgtcttc ccggacaagc gcatccacct gcagtacacc accacgagca cgaagctgca
     4621 caaggtgctc ggtgtcgaga cgccgacgtt cgactgaccc gggcccgtct ttcttttgcc
     4681 ataatcgatc tcgccgcgcg gcctgggtgc gcggcattgg ctgggggtgt tgggcgatac
     4741 gaagcacgac ttcggatcgt tcgactgaga aagtcccttt gaacctgatt gaggtaatcc
     4801 tcgcgcaggg aagcatgtcc agaggccgcg ctccatggcg cttcgggcag cccacctgcc
     4861 atcgaaagct ccgcgccgat ggctcatcga accgaactct cctcctcgcc gcgtgcgctc
     4921 tgcgccgtgg ccctctacgc cgcgagcggc gcctgggccc aaacgccgag cacgcagctg
     4981 gcgcccgtca cgatcaccgg ccgcgcacca gccgccgcaa gcgtggcggg cttcggcgac
     5041 gtgccgctct cgaaggcgcc gctgcaggcg agcgtattca gcaccgagca gctcaaggat
     5101 gccggcgtgc agcgcctcgc cgacctgacc cgcatcgacc cggctctcag cgacgcctac
     5161 aactccgagg gctacatcga ctacctgacg gtgcgcggct tcgtgctcga caaccgcttc
     5221 aacttccgac gcgacggcct gccgatcaac gccgagacct cgatcccgct cgacaacaag
     5281 gcgcgcctcg aagtgctcaa gggcacgagc ggcatccagt cgggcacgag cgcgccgggc
     5341 ggtctggtga actacgtggt gaagcgcccg ctcgacgcgc cgctgcgctc ggcgacgctc
     5401 gagtggcgcc aggccggcag cgtgctcggc gcggtcgacc tgagccagcg cttcggtgaa
     5461 agccaggcct tcggcgtgcg cctcaacgcg gcgctcgaac gcatcgaccc gcggctgcgc
     5521 gacgatcgcg gccaccgcaa cctgttcgcg ctggccggcg actggcggct cggcagcgac
     5581 acgctgatcg aggccgaggt cgaacagagc catcgctcgc aacccagcca gccggccttc
     5641 agcatgctcg gcaacaccgt gcccgcgccg gccgacccgc gcatcaacct gaacaaccag
     5701 ccgtggtcgc tgccggtggt gttcgatgcc accacggcgt cgctgcgcct gcagcagcgc
     5761 ctgaacgccg actggcggat cacggcgcac gccgccacgc agcagctgcg cagcgacgac
     5821 cgcgtggcgt ttccgttcgg ctgcaccgac accgacggca cctactacgc cgaccggtac
     5881 tgcccgagcg gcaatttcga cctctacgac taccgcagcg acaacgaacg ccggcgcctc
     5941 gacgcgctcg acatgggcct gcacggccgc ttcgcgaccg ggccgctggc ccacgcgctg
     6001 agcaccggcg tgctgcgctc gaccgtgcgc atccgcacgc aggcgcaggc gttcaacttc
     6061 gccggcaccg gcaacgtcga tggcagcgcc gtcacgccgc ccgcgcccga cgccatcacg
     6121 ccgggcacga accgcgacga gcgctcgacc gagctctacc tgcgcgacgc ggtgacggtg
     6181 accgagcgcc tgaccgcatg gctgggcctg cgccacagcc gactcgagcg ccagagcgtc
     6241 tcgaccgacg gcagcgcgcc caccgactac cggcagtcgt tcaccacgcc gtggctcgcg
     6301 gcgagctatg cattcgcccc tgagcacctg gtgtatgcga gctggggcca gggcgtcgag
     6361 agcgaggtgg cgccgaacca gccgcgcttc atcaaccgcg gccaaccgct gcccgcgctg
     6421 aagagccgcc aggtcgaggt gggactgaag ggcgcgaccg agaagctcgc ctggagcctg
     6481 accggattcg acatcgtccg gccggtcttc gacgatgtcg gcccctgcga cgtggatgcc
     6541 agttgcacgc accagctcaa cggcagcgag cgccaccgcg gcgtggaagc caccggcacg
     6601 ttacgggccg gtgcgtggac gctggacgcc ggcacgcaat ggctgcgcgc gcgccgcgag
     6661 ggtggtcagg acggggccct caacggcctg aagccgacca acgtgccggc cttcacgttg
     6721 aagctgcaga cggcgtacaa cgtggcgtcg gtcgcggggc tgacgctgcg cggcggactc
     6781 gtccacgaaa gctcgcgcat cgtgctgccc gacaacagca cgagcatccc cggctacagc
     6841 cgcttcgacg ccggcgcgag gtacgagacg aagatgggcg agcacacctg gaccttgcgc
     6901 gccggcatcg acaacctgtt cgacaagcgc gcctggaagg agtcgccgta ccagttcggc
     6961 catgcctacc tgttcccgct cgcgccgcgc acgctacggc tctcgatgca ggtcgatctg
     7021 tagactcgga gcgactggat ataattgaaa gctgatcctc gatagctcag ttggtagagc
     7081 gccggactgt taatccgtag gtccctggtt cgagcccagg tcgaggagcc aagaatacta
     7141 agggttgcga gttttcgcag ccctttttca tttgtacatt tttgacgata ttagt
//
LOCUS       DASVHM010000328         1574 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_167289, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000328 DASVHM010000000
VERSION     DASVHM010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167289"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..754)
                     /locus_tag="VF308_06255"
     CDS             complement(<1..754)
                     /locus_tag="VF308_06255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX7436289.1"
                     /translation="MKKVPLYSRSRRVAEPPADASLGASRSGAAVGLQAEPGALARWK
                     TFALRHERRLWAGAVLLLLAGSLLLNPRLAPGEVPLTFEQIDAAMRQSIEDKPLASPA
                     ARAYDAIIPSVVRVVGLMTEGDDGNDEKEHGTVERGVGSGVVIVDNGTILTNLHVVSG
                     AKRIKVTFFDGTESDAFVQGLQPENDLAVLRAKTIPDDLEAATMRSTGDLLPGDHVVA
                     VGFPFGIGPSVSAGVVSGLKRQFRSPDGQQMLT"
     gene            865..>1574
                     /locus_tag="VF308_06260"
     CDS             865..>1574
                     /locus_tag="VF308_06260"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEX7436290.1"
                     /translation="MWIDTHCHLDAAEFEADRDAVAERARRAGVGQIVLPAIDAASFE
                     VVRALAHRHGYAYALGIHPLAVGDAMDADLDRLAEALAAHRDDPRLVAVGEIGIDHFV
                     AGLDHARLERFCAAQLELARSFALPVILHTRRAVDPLLKLLRRIEVPGGIAHAFNGSA
                     QQAETLVRLGCRLGFGGAMTFDRALRIRHLAATLPLEAIVLETDAPDIPPHWLYRSAT
                     QRVQGPGAPANGGRNEPG"
BASE COUNT          229 a          553 c          557 g          235 t
ORIGIN      
        1 tggtgagcat ctgctggccg tcgggcgagc ggaactggcg cttcagcccg gatacgacgc
       61 cggccgaaac cgaaggcccg atgccgaagg gaaaaccgac cgcgacgacg tggtcgccgg
      121 gcagcaggtc gccggtcgag cgcatcgtcg cggcctcgag atcgtcgggg atggtcttgg
      181 cgcgcagcac tgcgagatcg ttctcgggct gcaagccctg cacgaacgcg tcggattcgg
      241 tgccgtcgaa gaacgtgacc ttgatccgct tcgcgccgga gacaacgtgc aggttggtca
      301 ggatcgtgcc gttgtcgacg atgacgaccc cgctgcccac gccgcgctcg accgtgccgt
      361 gctccttctc gtcgttgccg tcgtcgccct cggtcatgag cccgacgacg cgcacgaccg
      421 aggggatgat cgcgtcgtag gcgcgcgcgg ccggcgaggc gagcggcttg tcctcgatcg
      481 actggcgcat cgccgcatcg atttgctcga aggtgagcgg cacttcgccc ggggccagac
      541 gcgggttcag cagcaggctg ccggcgagca ggagcagcac cgcgccggcc cacagacgcc
      601 gttcatgacg cagcgcgaag gtcttccagc gcgcaagcgc gcccggctcg gcctgcaacc
      661 cgacggcggc accggaacgg gatgcgccca gggaagcatc cgcggggggt tccgcgaccc
      721 ggcgcgagcg gctgtaaagc ggtacctttt tcatcgtctg catcccgaac cggcgcagcg
      781 gcgccgtcgc tgcgttcaca cggtagcacg cggcgcatga cctgtctcga tggtggctcg
      841 aaagcgccga ggcatgatgg gcgaatgtgg atcgacaccc attgccacct ggatgcggcg
      901 gagttcgagg ccgaccgcga cgccgtggcc gagcgggccc ggcgcgccgg cgtcggccag
      961 atcgtcctcc cggcgatcga cgcggcgagc ttcgaggtcg tgcgcgcgct cgcccatcgg
     1021 cacggttatg cctacgcgct gggcatccat ccgctcgcgg tcggtgacgc catggacgcc
     1081 gatctggatc ggctcgccga ggcgctcgcc gcgcaccgcg acgacccgcg cctggtcgcg
     1141 gtcggcgaga tcggcatcga ccatttcgtt gccggcctcg atcacgcccg gctcgagcgt
     1201 ttctgcgcgg cccagctcga gctggcgcgc tcgttcgcgc tgccggtgat cctgcacacg
     1261 cggcgcgcgg tcgatccgct tctcaagctg ctgcgccgca tcgaggtgcc cggcgggatc
     1321 gcccacgcct tcaacggcag tgcgcaacag gccgagactt tggttcgtct cggctgcagg
     1381 ctcggcttcg gcggcgcgat gacgttcgac cgggccttgc gcatccgtca cctcgccgcg
     1441 acgctgccgc tcgaggcgat cgtgctcgag actgacgcgc ccgacatccc gccgcactgg
     1501 ctctaccgca gcgcaacgca gcgtgtgcaa gggccgggcg cgccagcgaa cggcgggcgc
     1561 aacgaaccgg gcga
//
LOCUS       DASVHM010000329         2877 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1324360, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000329 DASVHM010000000
VERSION     DASVHM010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2877
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1324360"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1788)
                     /locus_tag="VF308_06265"
     CDS             complement(<1..1788)
                     /locus_tag="VF308_06265"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013901209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HEX7436291.1"
                     /translation="MAVAVAAAIEERSALVVEAGTGVGKTYAYLVPALLSGARTLVST
                     ATKTLQDQLFLRDLPRLRAALQVPVSIALLKGRSSYLCLHRMKQARQSAQLPDRWAVR
                     TLAKVEEWSRSTPSGDLAELEGLDERSSVIPLVTSSRENCLGSDCPDFRPCHVVRARR
                     DAMAADVVVVNHHLFFADMALRDTGVAELLPSVDVALFDEAHQLCEAGVQFLGMTLGT
                     AQLIDFARDMLGAGLQQARGLQPWQELAAACDRSARDTRLAALGALRDLRGALKLRWT
                     ERAGRDDFLAALAAIGTACDAAVGALDTVEASSPDFSKLGERGRHLGALAARFQLPAA
                     AGQVRWIDVSPQQARLVESPLDIRDALREQMSAAPKAWVFTSATLGDDARLSWFTEPA
                     GLDAARVLRLGSPFDYATNARLHVPRAFPKPNEPGHPHAVAALTARCARVLGGRTFVL
                     TTTLRALQTIGEQLRVEFERHGDALTVLVQGQGPKRLLMQQFMADPRSVLVGSQSFWE
                     GVDVPGDALQCVIIDKLPFPPPGDPLVEARVQRLEAEGRNPFANYFVAEAAVSLKQGA
                     GRLIRHETDRGLLVVCDPRLAGMNYGRRLL"
     gene            complement(1913..2116)
                     /locus_tag="VF308_06270"
     CDS             complement(1913..2116)
                     /locus_tag="VF308_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007828249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF465 domain-containing protein"
                     /protein_id="HEX7436292.1"
                     /translation="MDNDLHSLPRRLIELRIEHADLDSLIDRAATDLPGDELAVRRLK
                     KRRLLLRDQMARIEAELDPPQPA"
     gene            2183..>2877
                     /locus_tag="VF308_06275"
     CDS             2183..>2877
                     /locus_tag="VF308_06275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HEX7436293.1"
                     /translation="MSTSTLGYRLSAATGIHRGDRAYQQDQVGMFAHSRVPGCVMGVL
                     ADGMGGKSGGRKAADQVLLTAQQLFERYSPSRDDASEALKQLVLEAHLMIKLTAITSE
                     EEPHSTVAAFLISPNRECDIVHAGDSRVYHFRGAEMVSRSIDHSYVQRLVDERQITEE
                     EANSHPQSNLLTGCLGTFQDPPLSQKHIDRLEIGDSLLSCSDGLWHYFTPRELGAIVH
                     ALPPREATEMLVG"
BASE COUNT          484 a          993 c          991 g          409 t
ORIGIN      
        1 cagcaggcgc cggccgtagt tcatgccggc caggcgcggg tcgcagacga cgagcaggcc
       61 gcgatcggtc tcgtggcgga tcaggcgtcc cgcgccctgc ttcagcgata ccgcggcctc
      121 ggcgacgaag tagttcgcga acgggttgcg accttcggcc tcgagccgct gcacacgcgc
      181 ctcgacgagc ggatctccgg gcggcgggaa aggcagcttg tcgatgatca cgcattgcag
      241 cgcgtcgccc ggcacgtcga cgccttccca gaagctctgc gagccgacga gcaccgaacg
      301 ggggtcggcc atgaactgct gcatcaggag gcgcttaggc ccctgcccct gcacgaggac
      361 ggtcaatgcg tcgccgtggc gttcgaactc gacgcggagt tgctcgccga tcgtctgcaa
      421 cgcgcgcagc gtggtcgtca ggacgaacgt ccgcccgccg agcacgcgcg cacaacgcgc
      481 tgtcagcgcg gcgacggcgt gcggatgccc cggttcgttg ggcttcggaa aagcgcgcgg
      541 cacatgcagg cgggcattcg tcgcgtagtc gaatgggctg ccgaggcgca ggacgcgcgc
      601 cgcgtcgaga ccggccggct cggtgaacca cgaaagccgc gcgtcgtcgc cgagcgttgc
      661 cgacgtgaac acccaggcct tcggcgcggc gctcatctgc tcacgcaagg cgtcgcggat
      721 gtcgagcggc gattcgacca ggcgggcctg ctgcggcgag acgtcgatcc agcgcacctg
      781 gccggcggcg gcgggcagct ggaaccgcgc ggcgagcgcg cccagatggc ggccgcgctc
      841 gccgagcttg gaaaagtcgg gcgaactcgc ctcgaccgtg tcgagcgccc cgaccgccgc
      901 gtcgcaagcc gtgccgattg ccgccagggc ggcgagaaaa tcgtcgcgcc cggcgcgctc
      961 ggtccagcgc agcttcagcg cgccgcgcag atcgcgcagc gcccccaaag cggcaaggcg
     1021 ggtgtcgcgc gccgagcggt cgcacgccgc agcgagctcc tgccagggct gcaggccacg
     1081 cgcctgctgc aggccggcgc cgagcatgtc gcgcgcgaag tcgatcagct gcgcggtgcc
     1141 gagcgtcatg ccgaggaact ggacgccggc ctcgcacagc tgatgcgcct cgtcgaaaag
     1201 cgcgacgtcg acgctcggca gcaactcggc cacgccggtg tcgcgcagcg ccatgtcggc
     1261 aaagaagaga tggtgattga cgacgacgac atcggccgcc atcgcgtcgc gacgcgcccg
     1321 caccacatgg caggggcgaa aatccgggca gtcgctgccc aggcagttct cgcgcgacga
     1381 ggtcaccagc ggaatcacgc tgctgcgctc atccaggcct tcgagctcgg cgaggtcgcc
     1441 gctcggcgtc gagcgcgacc attcctcgac cttggcgagc gtgcgcacgg cccagcgatc
     1501 gggcagctgg gccgactgcc gcgcctgctt cattcgatgc aggcacagat agctggagcg
     1561 ccctttcagc agggcgatgc tgaccggcac ctggagggcg gcgcgcaggc gtggcagatc
     1621 gcgcagaaag agttggtcct gcagggtctt ggtggcggtg ctgacgaggg ttcgcgcacc
     1681 gctcaggagc gccggcacga ggtacgcgta ggtcttgccg acccccgtgc cggcttcgac
     1741 gacaagggca ctgcgctcct cgatcgccgc ggcgaccgcg accgccatgc ggacctgcac
     1801 atcgcgttcg acatggttcg ggtcggcttg cgcgagcgcg ccccgcgccg cgaaagcgga
     1861 cgccaccgca tcctgcaatg cagtcaacgc ctgcctgccg cgacgaggcg gctcacgcgg
     1921 gttgcggcgg gtcgagctcg gcctcgatgc gcgccatctg gtcgcgcaac agcaggcgcc
     1981 gcttcttcaa ccggcgcacg gccagttcgt ctcccgggag atcggtcgcg gcgcgatcga
     2041 tcaggctgtc gagatcggca tgctcgatgc gcaattcaat caagcgacgc ggcagggaat
     2101 ggaggtcgtt gtccatcgac atgcgactat gtcgcggttt tcgcgaattt caccaagaac
     2161 aaaccgatta tagttttagg ccatgagcac atcgacgctg ggctatcgcc tgtccgccgc
     2221 caccggtata caccgcggtg accgggccta ccagcaggac caggtcggca tgttcgcgca
     2281 cagccgcgtg ccgggctgcg tgatgggcgt gctggccgat ggcatgggcg gcaagagcgg
     2341 cggtcgcaag gccgccgatc aggtgctcct caccgcgcag caactcttcg aacgctattc
     2401 gccgagccgc gacgacgcgt cggaggccct gaagcagctg gtgctggaag cgcacctgat
     2461 gatcaagctg acggccatca cctccgaaga agaaccgcac agcacggtcg ccgcgttcct
     2521 gatcagcccg aaccgggaat gcgacatcgt tcacgccggc gattcgcgcg tctaccactt
     2581 ccgcggcgcc gaaatggtca gccgcagcat cgaccactcc tacgtgcagc gcctcgtcga
     2641 cgagcgccag atcaccgagg aagaggccaa cagccacccg cagtcgaacc tgctgacggg
     2701 gtgcctcggc accttccagg acccgccgct gtcgcagaag cacatcgacc ggctcgagat
     2761 cggcgacagt ttgctcagtt gcagcgatgg tctctggcac tacttcacgc cacgcgagct
     2821 cggcgccatc gtgcatgcgc tgccgccgcg cgaggccacc gaaatgctgg tcggcaa
//
LOCUS       DASVHM010000330         3577 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_891153, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000330 DASVHM010000000
VERSION     DASVHM010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3577
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_891153"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..524)
                     /locus_tag="VF308_06280"
                     /pseudo
     CDS             complement(1..524)
                     /locus_tag="VF308_06280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553296.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1365 domain-containing protein"
     gene            complement(521..1861)
                     /locus_tag="VF308_06285"
                     /pseudo
     CDS             complement(521..1861)
                     /locus_tag="VF308_06285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345499.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
     gene            2296..3165
                     /locus_tag="VF308_06290"
     CDS             2296..3165
                     /locus_tag="VF308_06290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007870151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEX7436294.1"
                     /translation="MLYPELFKQLEAVRWNMDQDIPWDQFDARKLTAEQAETIKMNAI
                     TEWAALPATEMFLRDNRDDSDFSAFISVWFFEEQKHSLVLMEYLRRFRPDLVPTEDEL
                     HAVRFDFDPAPALETLMLHFCGEIRLNHWYRRAAEWHTEPVIKAIYETLARDEARHGG
                     AYLRYMKRAMQNFGDEARAAFAKVGVLMASARRTAQALHPTNLHVNAKLYPRDTVQSR
                     LPNPDWLQQWLDKQIQFDAVWESKVVERILHNMSLLLERSFASVQELNRYRKEVAATL
                     AAAAKGTPDALPA"
     gene            complement(3193..>3577)
                     /locus_tag="VF308_06295"
     CDS             complement(3193..>3577)
                     /locus_tag="VF308_06295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013901027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HEX7436295.1"
                     /translation="RELVTFIDLHLELVARELYPKAFFGGTLSEGNAARIRTLLEKNI
                     AGFKRLAQFAPYLAGPVFTQADCAAWVSLPVVALATKIVYGEDLLAAGGIDWKTYSKL
                     IGERPSARKVTADRKADQERMAAQT"
BASE COUNT          615 a         1174 c         1258 g          530 t
ORIGIN      
        1 agtcgccggc gacggcgcag aacggcgaga cgtggaagtc cttcgtggca cgcacttcgc
       61 gaccgaacgc aagcccggcg ccggcgagca ggtagcagtg ccgttcgccg aaggtgttgt
      121 tgacctcgac gacgacggcc gcgagcgtcg cgtcggcgcg gtggcagtac cagaagctca
      181 ccggcttgaa ggtgaagccg agcacgcgcg gatagcaatg cagccagacc tcgccggcgg
      241 cgtcgccgat gccttcgcgc cgcagcagct cgtcgatcca ggccaggctg tcggcgcgcc
      301 cgtcgccatg gtcgcgatcg aagaagctga tcaggccgaa gcggttgcgc gccagcaccc
      361 cggagggacg ggcgcggagg ctgcgcatcg gcagcatcag gaaataggtc ggataggcga
      421 agcgagcggt tcagggtcgg ccgcaggcgg gcatggcgga cctcgccgat gccgatcagg
      481 ggcgcggcaa gtgtcggggg cgcgctcggc gcgtcggtgc tcatgcggtt gcgcggggcg
      541 ccgggaccga ggcatcggcg gccgcgtcga cggtccatct cgcctccagc gcggcgcgca
      601 cggcgagtcc ggacatcagc ccgtcttcat ggaatccata gcgcgtccat gcgccgcagt
      661 accaggtgtg gccgatgccc tgcagctccg gcacgcgctg ctgcgccgcg atcgcggcag
      721 cgtcgaagac cggatgcgca tagtcgaatt cgccctggat ccgatcggcg cgcggctcgg
      781 tcaccggatt cagcgacacg atcaccggcg tcttgaacgg cagcggctgc agccggttga
      841 tcaggtagtg caggcagact gcggcgctct cgcgcgggct ttcgacggcg cgctcgtagt
      901 tccatgccgc ccaggcgcgc cggcgccgcg gcagcacggc cgcatcggtg tgcaggaccg
      961 cccgattgcg gtggtagcga acgccggccg agcaccgcgc gctcggccgg cgtcggatcg
     1021 gcgagcagcg cgagcgactg gtcgctgtgg cacgccagca ccgcctcgtc gaagcgttcg
     1081 gtgccggcgt cggtcgcgat ctggacgccg gcgcgctggc cggcgcgcgc gcggatgcga
     1141 cgcgcacgct gcgcaccggc gtcgccaggc gcgcatcggg aatcgcctcg agcatcttcg
     1201 ccacgtaggt gcgcgcgccg ccccgcacgg tgtaccactg cggccgatcc gtcacctggg
     1261 tcaggccgtg gttgtgacag aagcggatca tcgtcgcgat tggaaagcgc ggcatctggt
     1321 cggtcgggca tgaccagatg gagccgatca tcggcaggaa ataccagtcg cgaaacgcat
     1381 cggaaaaacg ctgccgggcg aggaagtccc cgatcggctc ggccagggcg ggcgcctgcg
     1441 ccgcggcgtc gccctgcgcg atcgcggtgg cgagccggtt gaagcgcagg acgtcggcca
     1501 gcatgcgcca gaagcgcggg tcgcccaggt tgcggcgctg ggcgaacacc gcgtcgaggt
     1561 tcgagccgct ccactcgagc ccgactcccg gcacctgcac cgaaaacgac atgtccgact
     1621 tcgcgagctc gacgccgagc tcggcgaaga gccgcagcag attcggatag gtgcgctcgt
     1681 tgagaaccag aaagccggta tccacgccgt gtgtcacgcc gtcctgcgtc acgtcgacgg
     1741 tgtgggtgtg gccgccgaaa tagtcggccg cttcgtaaag cgtgaccgcg gcccgtccgg
     1801 caagcccccg ggcgaccgac aggcctgcga ttcccgagtc gacgacggcg acgcgtcgca
     1861 cggccctcag ccccgcgcgc gcgcgcgcat caggcgctcg gggccgacgg acgaaggccg
     1921 cccggtcggg cggccttcag gaagaagaat gccgcgaagc gcccccgaag gaatgaggga
     1981 gggaggaggg aggaggagaa ccccccgggg atttcagtcc ctgtacggga ccggcttcgc
     2041 gacggaaacc aagattttta tttgacacct cgatggcgag cgagttccat gtttttcgaa
     2101 gccgggggac gcgttgaaag gagccatgcc gtgaggttcg gaaagactgc ttgaactgat
     2161 cagtatgaaa gataaccgat cagtatagaa tctgccattc cccttcacgg cgtccggcca
     2221 tgcatcggat cgggccctcg atcgcgcggc tgtcacatgc cccggactac actggcgcct
     2281 acgtcaagga tgtcgatgct ctatccggaa ctcttcaagc agctcgaggc ggtgcgctgg
     2341 aacatggatc aggacattcc ctgggaccag ttcgacgcgc gcaagctgac cgcagagcag
     2401 gccgagacga tcaagatgaa cgccatcacg gaatgggcgg ccttgccggc caccgagatg
     2461 ttcctgcgcg acaaccgcga cgacagcgac ttcagcgcct tcatcagcgt ctggttcttc
     2521 gaggagcaaa agcactcgct cgtcttgatg gagtacctgc gccggttccg ccccgacctc
     2581 gtgccgaccg aagacgagtt gcacgcggtg cgcttcgatt tcgaccccgc gccggcactc
     2641 gagacgctga tgctccattt ctgcggcgag atccgcctca atcactggta ccggcgcgcg
     2701 gccgaatggc acaccgagcc ggtgatcaaa gcgatctacg agacgctcgc gcgcgacgag
     2761 gcgcgccacg gcggcgccta cctgcgctac atgaagcgcg cgatgcagaa tttcggcgac
     2821 gaggcccgcg ccgccttcgc gaaggtcggc gtgttgatgg cgagcgcgcg ccgcaccgcg
     2881 caggccctgc acccgaccaa cctgcacgtc aacgcgaagc tctacccgcg cgacacggtg
     2941 caaagtcgct tgcccaatcc ggactggctc cagcaatggc tcgacaagca gatccagttc
     3001 gacgcggtgt gggagagcaa ggtcgtcgag cgcatcctgc acaacatgag cctcttgctg
     3061 gagcgcagtt tcgccagcgt gcaggagctc aaccgctatc gcaaggaagt ggcggcgacg
     3121 cttgcggctg cggccaaggg cacgccggac gcgctgccgg cctgaggcga tcgtccggcg
     3181 cgcgggagcg cgtcaggtct gcgctgccat ccgctcctgg tcggccttgc ggtcggccgt
     3241 gactttgcgg gcgctcgggc gctcgccgat cagcttgctg taggttttcc agtcgatgcc
     3301 gccggcggcg agcaggtctt cgccgtagac gatcttcgtg gccagcgcga cgaccggcag
     3361 gctgacccag gcggcgcaat cggcctgcgt gaagacgggg ccggccaggt aaggggcgaa
     3421 ctgcgcgagg cgcttgaagc cggcgatgtt cttttcgagc agcgtgcgaa tccgcgccgc
     3481 attgccttcg ctcagcgtgc cgccgaaaaa cgccttcgga tagagctcgc gggccacgag
     3541 ttcgaggtgc aggtcgatga aggtcacgag ttcgcgg
//
LOCUS       DASVHM010000331         2585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_602045, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000331 DASVHM010000000
VERSION     DASVHM010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2585
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_602045"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..312)
                     /locus_tag="VF308_06300"
     CDS             complement(<1..312)
                     /locus_tag="VF308_06300"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007883390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEX7436296.1"
                     /translation="MKLLVLNGPNLNLLGTREPDVYGRATLPDIEAALVREAAARGAT
                     VECFQSNHEGALIDRIHAARAEGVGFILINPGGLTHTSVALRDALAGVAIPFIEVHLS
                     NV"
     gene            503..1285
                     /locus_tag="VF308_06305"
     CDS             503..1285
                     /locus_tag="VF308_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007828334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate dehydrogenase"
                     /protein_id="HEX7436297.1"
                     /translation="MKLKDKVCIVTGAASGIGKEIALTFAREGGRVAIADLNQAAAAA
                     TANELKAQGFAAMAVGADVTDEAQVNAAVAAVVAAWGGVDVLVSNAGIQIVHPLEEFP
                     FAEWKKMIAIHLDGAFLTTKACLPHMYGSGNGGSIIYMGSVHSKEASMLKAPYVAAKH
                     GLIGLAKVIAKEGAKHKVRANVICPGFVRTPLVDKQIPEQAQALDISEDDVIKKVMLK
                     ETVDGEFTTTQDVAEVALLFASFPSNALTGQSLVVSHGWFMQ"
     gene            1326..2312
                     /locus_tag="VF308_06310"
     CDS             1326..2312
                     /locus_tag="VF308_06310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006297565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HEX7436298.1"
                     /translation="MDSLDLQVLVQARDWHAAGHAVWLVTVIETWGSAPRPPGALLAM
                     RADGLVAGSVSGGCVEDDLIDRVRNGERVDHPSLITYGVTKEEAARFGLPCGGNLRLV
                     QEPLVEIGWLEEILRRTAQHELVARRVDLASGRVTIEPAARGEAFSFDGKTLRALFGP
                     RWRMLIIGAGQLSRALAHMALMLDFEVICCDPREEYHLTWDIPGTTFSKAMPDDLALE
                     LQLDPHSAVVAVTHDPKLDDMALLEALKSPAFYVGALGSRGNTATRKERLALFDLSAA
                     EIDRLHGPIGLDIGSRTPAEIAVSILAEVIAVRNGVALKQKKPLRAAAAARP"
     gene            2309..>2585
                     /locus_tag="VF308_06315"
     CDS             2309..>2585
                     /locus_tag="VF308_06315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEX7436299.1"
                     /translation="MIPWLQSENDPLPRTQLALSGETEAPGLLAAGGTLTPRRLEEAY
                     SHGVFPWYSQGQPVLWWSPDPRMVLLVDEFKLSRSLRKTLARFVRTAG"
BASE COUNT          431 a          880 c          887 g          387 t
ORIGIN      
        1 cacgttcgac agatggacct cgatgaaggg gatcgcgacg ccggcgagcg cgtcgcgcag
       61 cgcgacgctg gtgtgtgtga gcccgcccgg attgatgagg atgaagccga cgccttcggc
      121 gcgggccgcg tggatgcgat cgatcagcgc gccttcatgg ttgctctgga agcactcgac
      181 ggtggcgccg cgcgccgcgg cctcgcgcac aagggcggcc tcgatgtcgg gcaaggtggc
      241 gcgtccgtag acgtcgggct cgcgcgtgcc cagcagattc aggttcggcc cgttcaagac
      301 cagcagcttc atgtctcgct ccgcgcgccg gccggggatg gccgcccccg gagcatgcca
      361 tgccggcgcg gcctcgcgta ttcttcccgg cttcgacgtt cggccagcct gccgatgaaa
      421 gcgccaccgt cgacaagaac gcgctgcgcg aacatcacaa tcgaaggctt ccagaatccg
      481 atatcctgaa agtggaacga ccatgaaact caaggacaaa gtctgcatcg tcaccggcgc
      541 cgcgagcggc atcggcaagg aaatcgccct cacgttcgcg cgcgagggcg gccgcgtcgc
      601 catcgccgac ctgaaccagg ccgcggccgc cgccacggcg aacgagctga aggcgcaagg
      661 cttcgccgct atggcggtgg gcgccgacgt gaccgacgaa gcgcaggtca acgccgccgt
      721 cgccgcggtc gtggcggcct ggggcggcgt cgacgtgctg gtcagcaacg ccggcatcca
      781 gatcgtgcac ccgctcgagg aatttccgtt cgccgaatgg aagaagatga tcgcgatcca
      841 cctcgacggc gcgttcctga ccaccaaggc ctgcctgccg cacatgtatg gctcgggcaa
      901 cggcgggagc atcatctaca tgggctcggt gcattcgaag gaagcctcga tgctgaaggc
      961 gccttatgtc gctgcgaaac acggcctgat cggcctggcc aaggtgatcg ccaaggaagg
     1021 cgcgaaacac aaggtccgcg ccaacgtcat ctgcccgggg ttcgtgcgca ccccgctcgt
     1081 cgacaagcag atccccgaac aggcgcaggc cctcgacatc agcgaggacg acgtgatcaa
     1141 gaaggtgatg ctgaaggaga ccgtggacgg cgagttcacg accacgcagg atgtggccga
     1201 ggtggcgctg ctgttcgcga gcttccccag caacgcgttg acgggccagt cgctggtcgt
     1261 gagccacggc tggttcatgc agtagattca tgcagtaaga acaggcggac tttcaaggag
     1321 cggccatgga cagcctcgat ctgcaagtgt tggtgcaggc ccgtgactgg catgcggcgg
     1381 gccacgccgt gtggctcgtc acagtcatcg aaacctgggg ctcggcgcca cggccgccgg
     1441 gcgcgctgct cgcgatgcgc gccgatggcc tcgtcgccgg gtcggtctcg ggcggctgcg
     1501 tcgaagacga cctgatcgat cgcgtgcgca acggcgaacg ggtcgaccac ccctccctga
     1561 tcacctacgg cgtgaccaag gaggaagcgg cgcgcttcgg cctgccttgc ggcggcaacc
     1621 tgcgcctcgt gcaggagccg ctcgtcgaga tcggctggct cgaggaaatc ctgcgccgca
     1681 ccgcgcaaca cgagctggtg gcgcgccggg tcgacttggc gagcgggcgc gtcacgatcg
     1741 agccggcggc gcgcggcgag gccttcagct tcgacggcaa gaccctgcgc gccctcttcg
     1801 ggccgcgctg gcgcatgctg atcatcggtg ccgggcagct ctcgcgcgcg ctcgcgcaca
     1861 tggcgctgat gctcgacttc gaagtgatct gctgcgaccc gcgcgaggag taccacctga
     1921 cttgggacat ccccggcacg accttcagca aggcgatgcc ggacgatctc gcgctcgagc
     1981 tccagctcga cccgcacagc gcagtcgtcg ccgtgacgca cgacccgaag ctcgacgaca
     2041 tggcgctgct ggaggcgctg aagtcgccgg cgttctacgt cggcgcgctc ggctcgcgcg
     2101 gcaacaccgc gacgcgcaag gagcggctcg ccctgttcga tctttcggcc gccgagatcg
     2161 atcgcctgca cggaccgatc ggcctcgaca tcggcagccg cacgccggcc gagatcgcgg
     2221 tctcgatcct ggccgaggtg atcgcggtgc gcaacggcgt ggcgctgaaa cagaagaagc
     2281 cgctgcgcgc ggccgccgcc gcacggccgt gatcccctgg ctgcaaagcg agaacgaccc
     2341 gctgccgcgg acgcagctcg ccctgtccgg cgagaccgag gctcccggct tgctcgccgc
     2401 cggcggcacg ctcacgccgc ggcgtctcga agaggcatat tcgcacggcg tctttccctg
     2461 gtacagccaa ggccagcccg tgctgtggtg gtcgccggac ccgcgcatgg tgctgctggt
     2521 ggacgagttc aagctctcgc gctcgctgcg caagacgctc gcgcgcttcg tgcggaccgc
     2581 cggct
//
LOCUS       DASVHM010000332         1995 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_673901, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000332 DASVHM010000000
VERSION     DASVHM010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_673901"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1293)
                     /locus_tag="VF308_06320"
     CDS             complement(<1..1293)
                     /locus_tag="VF308_06320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEX7436300.1"
                     /translation="MSILGSRVDPQSAAFRSNEQHYDTLLVELRARHTYVLAGGGALL
                     VERHHQRHKMLARERIDLLLDPLSPFLELSPLAAWGLYDNAVPSAGVVTGIGLIAGTP
                     CMLIANDATVKGGSFFAETVKKHVRAQDIAQHHRLPVIYLVDCGGAYLPEQDRVFPDK
                     DHFGNTFYRQCQMSAAGIPQIAAVFGGCTAGGAYIPALADEVVMVRGQARIHLGGPQI
                     VKAAINEIVDGETLGGAEMHTRVSGVSDYLAENEAQALLRVRDIVAGLNRTRPLHGAL
                     REVRPPRHDIAELRGVIPPGLKESYDVREVIARLVDDSELQEFKPEFGSTLVCGTAHW
                     CGYPVGILANNGVLFSESAVKGAHFIELCNQRNIPLLFLQNITGFMVGTEAERGGIAR
                     HSAKLVYAMATARVPRLTVIIGGSFGAGNYGMCGRGFDP"
     gene            complement(1300..1770)
                     /locus_tag="VF308_06325"
     CDS             complement(1300..1770)
                     /locus_tag="VF308_06325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-ribbon domain-containing OB-fold protein"
                     /protein_id="HEX7436301.1"
                     /translation="MSKSPVTPADHVVHGEWHVRYNYPVGEVGARFFDALKEKRIVAT
                     RCSASGITYLPPRAYCERSFEKCDGYVDAGAEGTIEAATIVSAAFDNLPPPPYAIAYV
                     RLDGVSTAMVNFVRGMDLSDVPAAAAKLKPGTRVRVEFADRPEGRITDFHYVLA"
     gene            complement(1785..>1995)
                     /locus_tag="VF308_06330"
     CDS             complement(1785..>1995)
                     /locus_tag="VF308_06330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HEX7436302.1"
                     /translation="PSGGTLCTNPIGVTGLVRAAEAARQVMGRSAAMQVKDVHNVVAT
                     AIGGSTQFFTVTMLSDEPRRSAAGA"
BASE COUNT          315 a          650 c          707 g          323 t
ORIGIN      
        1 cgggtcgaag ccgcgcccgc acatgccgta gttgccggcg ccgaacgagc cgccgatgat
       61 caccgtgagg cgtggcacgc gcgccgtcgc catcgcgtag accagcttgg cgctgtggcg
      121 tgcgatgccg ccgcgctcgg cctcggtgcc gaccatgaag ccggtgatgt tctgcaggaa
      181 gaggagcgga atgttgcgct ggttgcagag ctcgatgaag tgcgcgcctt tcaccgccga
      241 ttctgagaag agcacaccgt tgttggcgag gatgcccacc gggtagccgc accagtgcgc
      301 ggtgccgcac accagggtgg agccgaactc gggcttgaac tcctgcaact ccgaatcgtc
      361 gaccaggcgc gcgatgacct cgcgcacgtc gtaggactcc ttcagcccgg gcgggatcac
      421 gccacggagc tcggcgatgt catggcgcgg cggtcgcacc tcgcgcaacg cgccgtgcaa
      481 cgggcgcgtc cgattcaggc cggcgacgat gtcacgcacc cgtaacagcg cctgggcctc
      541 gttttcggcc aggtagtcgg agacgccgga cacgcgcgtg tgcatttcgg cgccgccgag
      601 cgtctcgccg tcgacgatct cgttgatggc ggctttcacg atctgcggcc cgccgaggtg
      661 gatgcgggcc tggccgcgca ccatcaccac ttcatcggcc agcgccggaa tgtaagcgcc
      721 gcccgccgtg cagccgccga acacggccgc gatctgcgga attccggccg ccgacatctg
      781 gcactggcga tagaacgtgt tgccgaagtg atccttgtcg gggaagacac ggtcctgctc
      841 gggcaggtag gcgccgccgc aatccacgag gtagatcacc ggcaggcgat ggtgctgggc
      901 gatgtcctgc gcgcgcacgt gcttcttcac ggtttcggcg aagaacgaac ctcccttcac
      961 cgtggcatcg ttggcgatca gcatgcacgg cgtgccggcg atcaggccga tgccggtgac
     1021 gacgccggcc gacggcacgg cgttgtcgta gaggccccag gcggcgagcg gcgagagttc
     1081 gaggaacggc gaaagcgggt cgagcaacag gtcgatgcgc tcgcgcgcca gcattttgtg
     1141 acgctggtgg tggcgctcga ccaggagcgc accgccgcct gccagcacgt aggtgtggcg
     1201 cgcgcgaagc tcgacgagga gcgtgtcgta gtgctgctcg ttgctcctga aagccgccga
     1261 ttgcgggtca acgcgcgacc cgaggatgct cacctcgcct caggccagca catagtggaa
     1321 gtcggtgatc ctgccttcgg gccggtcggc gaattcgacg cgcacgcggg tgccgggctt
     1381 gagcttcgcg gcggccgccg gcacgtcgct caggtccatt ccgcgcacga agttgaccat
     1441 cgcggtgctc accccgtcga gccgcacata ggcgatcgcg tagggcggcg gcggtaggtt
     1501 gtcgaaggcg gcgctgacga tggtggcagc ctcgatcgtg ccttcggcac cggcatcgac
     1561 gtagccgtcg cacttctcga agctgcgctc gcagtacgcg cgcggcggca ggtaggtgat
     1621 gcccgaggcg ctgcagcgcg tggcgacgat gcgcttttcc ttcagcgcat cgaagaagcg
     1681 tgcgccgacc tcgccgaccg gatagttgta gcgcacgtgc cattcgccat ggacgacgtg
     1741 atcggcggga gttacagggc tcttgctcat cggaaggtct cctctcaggc gccggccgcg
     1801 gatcggcgcg gctcgtcgct cagcatcgtg acggtgaaga actgggtcga accgccgatc
     1861 gcggtggcga cgacgttgtg cacgtccttg acctgcatcg cggcggaacg gcccatgacc
     1921 tggcgcgccg cttcggccgc acggaccaga ccggtcacgc cgatcgggtt ggtgcagagc
     1981 gtgccgcccg agggg
//
LOCUS       DASVHM010000333         2953 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1107024, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000333 DASVHM010000000
VERSION     DASVHM010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2953
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1107024"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VF308_06335"
     CDS             complement(<1..402)
                     /locus_tag="VF308_06335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013436209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7436303.1"
                     /translation="MREAQPDAATEVDVLVVGGGINGAGIARDLAGRGYRVLLCEKDD
                     LAQHTSSASTKLIHGGLRYLEYYKFRLVTEALKEREALLENAPHIIEPLAFVLPHEAH
                     LRPAWMIRLGLFLYDHLGGKMTLPKSFGVKLA"
     gene            540..2063
                     /gene="glpK"
                     /locus_tag="VF308_06340"
     CDS             540..2063
                     /gene="glpK"
                     /locus_tag="VF308_06340"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011465941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004370 - glycerol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HEX7436304.1"
                     /translation="MTGKRFLLALDQGTSSSRSIVFDTEGRIVAMAQREFRQIYPQPG
                     WVEHDPLEIWSTQLATAREALAGAGIGAVELASIGITNQRETTVVWNRSTGEPLGNAI
                     VWQDRRTEPTCASLRERGLEATFRARTGLVIDAYFSGTKLKWILDTLPGARAAALKGE
                     LAFGTIDTWLMWQLTGGANPATRAGAVHATDVSNASRTLLFNVRTGEWDEELLALLDI
                     PRGLLPAVHPSSHVFGSTQAGLLGAPVPIGGVAGDQQSALFGQACFAAGQVKNTYGTG
                     CFMLMHTGTTFETSANGLITTRVAQLAGPPQFAREGSVFIGGAVVQWLRDGLRAIKAS
                     AEIEGLAERVPDSGGVMFVPAFTGLGAPYWKADARGTIVGLTRGSGVAHIARAALESI
                     AFQSAALLQAMSRDAMAAGGAPVTELRVDGGACVNNLLMQFQADLLGIPVLRPKVIET
                     TALGAAYLAGLSCGVYASLGELAAQWQVERTFLPTLARARAEELMQRWEHAVAQATL"
     gene            2122..>2953
                     /locus_tag="VF308_06345"
     CDS             2122..>2953
                     /locus_tag="VF308_06345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HEX7436305.1"
                     /translation="MVEFNQTGAGQGRLYLQGFGGDTSNFAISAARQGAKAGYLSALG
                     DDANGRMLRGLWAREGVDHASVRTDAAAFTAIYFVTHDAAGHHFGFMRAGSAASRMAP
                     ADLPRKRIEAAKVLHLSGISLAISATACDTCYAAIEIARAAGVRVSFDTNLRLGLWPL
                     ARARAVMSDVMALSDICLPSLDDIAAITGRADPDAIVDHCLRLGAKVVALKLGPDGAL
                     VADANQRFRIAPHPCTPVDATGAGDTFGGAFVVRLLGGDALEAAGHYAAVAAALSTEG
                     Y"
BASE COUNT          444 a         1033 c         1009 g          467 t
ORIGIN      
        1 ggcgagcttg acgccaaagg acttgggcag cgtcatcttg ccgcccaggt gatcgtagag
       61 aaacagcccc agccggatca tccacgccgg acgcagatgc gcctcatgcg gcaacacgaa
      121 cgcgagcggc tcgatgatgt gcggcgcgtt ttcgagcagc gcctcccgct ccttcagcgc
      181 ctcggtcacc aggcggaatt tgtagtactc gaggtagcgc aggccgccgt ggatcagctt
      241 cgtcgatgcc gacgaagtgt gctgcgcgag gtcgtccttc tcgcacagca gcacgcggta
      301 gccgcgcccg gccagatcgc gcgcgattcc ggcgccgttg atgccgccgc cgacgacaag
      361 gacgtcgacc tccgtcgcgg catcgggttg cgcctcgcgc aggacggcga cgacttcggc
      421 aggcgcgtga ttcaaacgga ctccattcga ggatcggtgc ggcgcgaggg gcgcaaagaa
      481 aggtacgctt gcggcggcat attcttgcat cgccccaggg cccgatccgt ggagaccgca
      541 tgaccggcaa acgcttcctg ctcgccctcg accagggcac gtcgagctcg cgcagcatcg
      601 tgttcgacac ggaaggccga atcgtcgcca tggcgcagcg cgagtttcgc cagatctatc
      661 cgcagcccgg ctgggtcgag cacgatccgc tcgagatctg gtcgacgcag ctcgcgaccg
      721 cgcgcgaagc gctcgcgggt gccggcatcg gcgcggtcga gctcgcctcg atcggcatca
      781 cgaaccagcg cgagaccacg gtcgtctgga atcgctcgac cggcgagccg ctcggcaacg
      841 caatcgtctg gcaggaccgc cgcaccgagc ccacctgcgc gagcctgcgc gagcgtggcc
      901 tcgaggcgac gtttcgcgcc aggaccgggc tcgtgatcga tgcctacttc tccggcacca
      961 agctgaaatg gattctcgac acgctgccgg gtgcgcgcgc tgccgcgctg aagggtgagc
     1021 tcgctttcgg cacgatcgac acctggctga tgtggcagct gaccggcggc gcgaaccctg
     1081 ctactcgggc gggcgcagtg cacgcgaccg atgtcagcaa tgcgtcgcgc acgctcctct
     1141 tcaacgtgcg caccggtgaa tgggacgagg agttgctcgc cttgctcgat attccgcgcg
     1201 gcctgctgcc cgcggtccat ccgtcgagcc acgtcttcgg cagcacgcag gccgggttgc
     1261 tcggcgcgcc ggtgccgatt ggcggcgtcg ccggcgacca gcaaagcgcg ctcttcggcc
     1321 aggcgtgctt cgcggccggg caggtcaaga acacctacgg caccggctgc ttcatgctga
     1381 tgcacaccgg cacgacgttc gagacttcgg ccaatggcct catcacgacg cgcgtcgcgc
     1441 agttggccgg gccgccgcag ttcgcccgcg aaggcagcgt cttcatcggc ggcgcggtgg
     1501 tgcagtggct gcgcgacggg ctgcgcgcga tcaaggcgag cgccgaaatc gaggggctcg
     1561 ccgaacgcgt tcccgacagc ggcggcgtga tgttcgtgcc cgccttcact ggcctcggtg
     1621 caccctactg gaaggccgat gcgcgcggca cgatcgtcgg cctgacgcgc ggcagcggag
     1681 tcgcgcacat cgcccgcgcg gccctcgaga gtatcgcgtt ccagagcgcg gcgctgcttc
     1741 aggcgatgag ccgcgacgcg atggccgccg gcggcgcgcc ggtcaccgag ctgcgcgtcg
     1801 atggcggtgc ctgtgtcaac aacctcctga tgcagttcca ggccgatctg ctcggcattc
     1861 cggtgttgcg gccgaaggtc atcgagacga cggcactcgg cgcggcgtat ctcgccggtc
     1921 tttcctgcgg cgtctatgcg agcctcggcg aactcgctgc gcaatggcag gtcgagcgca
     1981 cgttcttgcc gacgctggcg cgcgcacggg ccgaggaatt gatgcaacgc tgggagcacg
     2041 ccgtcgccca ggccacgctt tgatcgacga tcacgaaggc ccggcgtgag cgacgtggac
     2101 atcctcgccc tcggcgaagc catggtcgag ttcaaccaga ccggggctgg ccaaggacgg
     2161 ctctatctgc aagggttcgg cggcgatacg tcgaacttcg cgatctcggc ggcgcgtcag
     2221 ggtgcgaaag cgggctacct gtcggccctc ggcgacgacg cgaacggccg catgctgcgc
     2281 gggctttggg cgcgcgaagg cgtcgaccac gctagcgtgc gcaccgacgc ggcggccttc
     2341 accgcgatct acttcgtgac ccacgacgcc gccggtcacc acttcggttt catgcgcgcc
     2401 ggttcggccg cgagccgcat ggcgcccgcc gacctgccgc gcaagcgcat cgaggcggcg
     2461 aaggtcctcc atctttccgg catctcgctc gccatttcgg cgacggcgtg cgacacctgc
     2521 tacgccgcga tcgagatcgc ccgcgccgcc ggcgttcgcg tctcgttcga caccaacctg
     2581 cgcctcgggc tctggccgct ggcgcgggcg cgcgccgtga tgagcgacgt catggcattg
     2641 agcgacatct gcctgccgag cctcgacgac atcgccgcga tcaccggccg cgccgacccc
     2701 gacgccatcg tcgaccactg tctgcgcctc ggtgccaagg tggtcgcgct caagctcggt
     2761 ccggacggcg ccctggttgc ggacgccaac cagcgctttc gcatcgcgcc gcatccgtgc
     2821 actccggtcg acgcaaccgg ggccggcgac actttcggcg gcgcgttcgt ggtacgcctt
     2881 ctcggcggtg atgcgctgga ggcggccggg cactacgccg ctgtcgcggc ggcgctatcg
     2941 accgagggtt acg
//
LOCUS       DASVHM010000334         3516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_529180, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000334 DASVHM010000000
VERSION     DASVHM010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3516
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529180"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1644)
                     /locus_tag="VF308_06350"
     CDS             complement(<1..1644)
                     /locus_tag="VF308_06350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436306.1"
                     /translation="MTRACKATMAGRALAVATSAAALAALTACGGGSTGTDRDSGVNK
                     TYLSVDASDADGDSLQYQWRVTSGSIDNRNAKESVWTMPDGPGLHFAYVIVSDGKGGW
                     VEQQYAVSSDTLGTTATSPAPITRAAPAVVEVSGSQNRLRFSSKDSTRFKPLDGSAPQ
                     ARTVYLPDVTVRVTSSGTGSVVFIGRTDLGGELDLPKLATGSYTVLCATQPDAPLNGC
                     GSFVVRSDAAVQLVPLALPNSQNLRLFGHVALADGGVCGHENAYFSVLSAATVQLQQP
                     DGTAIGQPVRVNRYGDYAVDAAVPISGALKLKVVCEAYVATLDVPASTNPAGYVGDTP
                     VELSHTIPNSRPNVIKMVANGADGNVRGRMIIPGRGTGSDAMPGSNHFLTYKGKDTKL
                     SGCLYYRALGAVADCDAQGNMVDPISFDDWKRKNGFGTAADVSANFINKRDLNLVRRM
                     VATRSAGGGIAFYVCNAPGPDGQTQKEIDDVIAAALNDEKQVACVTMEYTSVAGANGG
                     QPFTQFYTFGPTGKLLASINLDGRGEKYMPGSCVACHGGS"
     gene            complement(1830..3500)
                     /locus_tag="VF308_06355"
     CDS             complement(1830..3500)
                     /locus_tag="VF308_06355"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEX7436307.1"
                     /translation="MAGATSSHSLTLLAGTRLGEFEITQTIGEGGFGIVYSAWDHSLD
                     RRVALKEYMPSSLAVRSGQAEIQPRSERHRETFEAGLKSFVNEAKLLAQFDHPSLLKV
                     YRFWEANGTAYMVMPFLEGLTLRDTVRAMPEPPNEAWILGLLSPLCDALAMLHAAQIY
                     HRDIAPDNIHLLADTGRPLLLDFGAARRVIGDMTQALTAILKPGYAPVEQYADIPGLK
                     QGPWTDVYALAAVVHWMVTGKTPPPSVGRMFDDAQVPLAQRAAGRYSSAFLEAVDRAL
                     VVMPDKRTQTIDDFRNDLSAIAPSGATVTQAREPSAAAATRAPVAPATSAAAATTVTT
                     GRATQASREEQRREPATQTLAAAPPESASRAQPAAARPLPWAVPAAVVGGLALVVAVG
                     YFLVVKPAPAPVAPAPPPGASLVTAPATIAPEIAAGASSVATVPQVPVPEPVNASVNA
                     PVNTATSSPLHEQGAEPSEAAVVANPAPARHGAAVVDGAPKPGNGEARPALRKAIEAR
                     PERRDEPAAGQQHAGNANQAECARLFQRLSIGESSPELIERVRTLHCR"
BASE COUNT          533 a         1152 c         1233 g          598 t
ORIGIN      
        1 cgagccgccg tggcaggcga cgcaggatcc tggcatgtat ttttcgccgc gcccgtcgag
       61 gttgatcgag gcgagcaatt ttccagtcgg gccgaacgtg tagaactggg tgaacggctg
      121 gccgccgttc gcgccggcga ctgacgtgta ttccatggtg acgcaggcga cctgcttttc
      181 atcgttcagc gccgccgcga tcacgtcgtc gatttccttt tgcgtctggc cgtcagggcc
      241 cggggcgttg cagacataga acgcgatgcc gccgcctgcc gaccgcgtgg cgaccatgcg
      301 ccggaccaga ttcaggtcgc gcttgttgat gaagttcgcc gacacgtcgg cggccgtgcc
      361 gaagccgttc ttgcgcttcc agtcgtcgaa ggagatcgga tcgaccatgt tgccctgcgc
      421 gtcacaatcc gccacggctc cgagcgcgcg gtagtaaagg catccgctca gcttcgtgtc
      481 cttgcccttg taggtcagga agtggttgga gccgggcatt gcgtcggagc cggtgccccg
      541 gcccgggatg atcatgcggc cgcgaacgtt gccgtcggcc ccgttggcga ccatcttgat
      601 gacattcggc cgcgagttcg gaatcgtgtg cgacagctcg accggcgtgt cgcccacgta
      661 gcctgcaggg ttcgtcgagg caggaacgtc aagcgttgcc acataggctt cgcacacgac
      721 cttcagcttc agcgcaccgc tgatcggaac tgcggcgtcg accgcgtagt cgccgtagcg
      781 gttgacgcgc acgggctggc cgatcgccgt gccgtcaggc tgttgcagtt gcaccgtggc
      841 tgcgctcagc acgctgaaat acgcattctc atggccgcac acgccgccat cggcgagtgc
      901 cacgtggccg aacagtcgca ggttttgcga attcggcagc gccagcggca cgagctggac
      961 cgcggcatcg ctcctgacga cgaaactgcc gcagccattg agcggcgcgt ctggctgggt
     1021 ggcacaaagg accgtgtagc tgccggtcgc tagcttggga agatcgagtt ctccgccaag
     1081 atcggtgcgg ccgatgaaga cgacgctgcc ggttccggag gaggtgacgc ggaccgtcac
     1141 gtcgggcagg tacacggtcc gcgcttgcgg cgcgctcccg tccagcggct tgaagcgcgt
     1201 cgaatccttc gaagagaacc gcagccggtt ctgcgacccc gacacttcga cgacggccgg
     1261 ggcggcgcgc gtgatcggcg ccgggctcgt tgcagtcgtg ccgagcgtgt cggaagacac
     1321 tgcatattgc tgctcgaccc agccgccctt gccgtcggag acgatcacat aggcgaagtg
     1381 aagccccggc ccgtcgggca tggtccacac ggattccttg gcgttgcggt tgtcgatgct
     1441 gccgctcgtg acgcgccact ggtactgcag gctgtcgcca tcggcgtcgc ttgcgtcgac
     1501 gctgagatag gtcttgttga cgccgctgtc gcggtcggtc ccggtcgagc cgcccccgca
     1561 cgcggtcaat gccgccagag cggcagcgct cgttgccacc gccagggcgc gccctgccat
     1621 cgtcgctttg caagctcggg tcattcgctc ctctttcgtc gatcgcgccg aagacggcgg
     1681 gccgatcttg ccgcgcatgc gcagaatgcg gatgcgcccc cgcaagccac acgctcggac
     1741 ttgcggtgcc cggcctcggg gcgacgcaga tatttgctga taacgaaagc gtcgtcaact
     1801 ccgctcggga ggatggcgct cgagccgaac tatcggcaat gcaacgttcg tacgcgctcg
     1861 atcaattcgg gactgctttc cccgattgac aagcgctgaa agagtcgggc gcattcggct
     1921 tggttcgcgt tgccggcgtg ctgttggccg gcagccggct cgtcgcgacg ctccggcctg
     1981 gcctcgatcg ctttgcgcag cgccggcctg gcctcgccgt tgccgggctt cggcgcaccg
     2041 tcgaccaccg cggcgccgtg acgcgcaggc gccgggttcg cgacgacagc ggcctccgac
     2101 ggctcggcgc cttgttcgtg caagggcgac gaggtggcgg tattcacggg cgcgttcacg
     2161 gacgcgttca cgggctccgg caccggcacc tgcgggaccg tggccacgct cgaggcccca
     2221 gccgcaatct ccggcgcgat ggtcgcaggt gccgtaacga gggacgcccc cggcggcggc
     2281 gccggagcga cgggcgcggg cgcaggcttg accacgagga agtagcccac ggcaacgacc
     2341 agcgcgagcc cgccgacaac ggcggcggga acggcccatg ggagcggccg tgcggccgca
     2401 ggctgtgccc ggctcgccga ttcaggcggc gccgcggcca gggtctgcgt cgcgggctca
     2461 cgtctttgct cttcgcgcga cgcttgtgtc gcccgacccg tcgtgaccgt cgtggccgcc
     2521 gcggccgacg ttgcgggcgc gacaggcgcc cgcgtcgcgg cggccgcaga aggttcccgc
     2581 gcctgcgtca cggtggcacc gctcggcgct atggcgctca ggtcgttgcg gaagtcgtca
     2641 atcgtctgcg tccgcttgtc gggcatgacg acgagcgcgc gatcgacggc ttcgaggaac
     2701 gcggagctgt agcgacctgc cgcgcgctgc gccagcggca cctgcgcgtc gtcgaacatg
     2761 cggccgaccg acggcggcgg ggtcttgccg gtgaccatcc agtgcacgac ggcagcgagg
     2821 gcgtagacat cggtccatgg gccctgcttc aggccgggaa tgtccgcgta ctgttccacc
     2881 ggcgcgtagc ctggcttcag gatggccgtg agcgcctggg tcatgtcgcc gatcacgcgg
     2941 cgcgccgcac cgaagtccag gagcaaaggt cggccggtgt cggcgagcag gtgaatgttg
     3001 tcgggcgcga tgtcgcggtg gtagatctgc gccgcgtgca gcatggccaa cgcgtcgcac
     3061 agcggcgaga gcaggccgag gatccaggcc tcgttcggag gctcgggcat ggcgcgcacc
     3121 gtgtctcgga gcgtcaggcc ctcgagaaaa ggcatgacca tgtaggcggt gccattggcc
     3181 tcccagaagc gatagacctt gagcagcgaa gggtgatcga attgcgcgag aagcttcgct
     3241 tcgttgacga agctcttcag gccggcttcg aacgtctccc ggtggcgctc cgagcgcggt
     3301 tggatctcgg cctggccgga gcggaccgca agcgaggaag gcatgtactc cttgagcgcg
     3361 acccggcgat cgagcgagtg gtcccatgcc gaatagacaa tgccgaaacc gccctcgccg
     3421 attgtctgcg tgatctcgaa ctcgccaagc cgggtgccgg ccagaagcgt gagcgagtga
     3481 ctcgaggtcg cgccggcgat agagcttgcc gacgta
//
LOCUS       DASVHM010000335         3118 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_167929, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000335 DASVHM010000000
VERSION     DASVHM010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3118
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167929"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1273)
                     /locus_tag="VF308_06360"
     CDS             complement(<1..1273)
                     /locus_tag="VF308_06360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436308.1"
                     /translation="MQNAIAFSDNDVIVVAWSYGQRLEGCMGFAVYRIDAAGAETALP
                     SMAVFPTFKRTPGQTTAEFPVQKFYWKDPYARLVADQTGQRRFRYKIVPLEGQPGQLV
                     PMALAFAVSNEVEISPVVAPKLHAYFNRGLISTQHVSQALNGAPSSYKLLDLIRQPGN
                     ALRKSLAGDMTGALLGFVQRAQSGGKLYAALYELGDEELVSALEAAGKKLHLVLSNPS
                     ASDKQSASAVTDGNALSRARLAKTAGVLLSRMLPANQIGHNKFVVHVNRTGHASAVLF
                     GSTNWTSTGLCAQTNNTIVCEEPALAKRYLDYWHQLAADTTSAGADPKALQAASLRAW
                     DAKSKLIALAPRQHADELVLAQHAEAARQQHENRKAPARHGRSRRADRRGQAGGAVSR
                     LLSGQPEPRQLGRRGAEGRQEPVRPRLRHEPL"
     gene            complement(1324..2352)
                     /locus_tag="VF308_06365"
     CDS             complement(1324..2352)
                     /locus_tag="VF308_06365"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase"
                     /protein_id="HEX7436309.1"
                     /translation="MKAAILPDFGRPLRIEDIPMPVPEADEVLMQVEVCGACHSDLHI
                     MQGDRPGFRAATKARVIPGHEVIGRVVAKGSAVEHLAVGDRVGVAWLHSACGVCEQCR
                     EGLENLCRKGVVTGMMVDGGYAEFMRAKAEFALPIPASLTSAEAAPLFCAGVTVYRAL
                     KNAGAGPGQRVAVFGVGGLGHLAVQVARAFGAEVIGLDVSDDKLALAREFGAAHVFKV
                     TDPDTVKAVRKLGGVHVAVVTSAAKAAYDMALKCLRPAGTLAVVGLPAEPLGFQALAF
                     VGAELRIVSAAVGTRDDLRATLDLAVAGKLRCRIEEAPLEQINDVFERMARGAINGRM
                     VLRCCAGS"
     gene            complement(2363..>3118)
                     /gene="pcaD"
                     /locus_tag="VF308_06370"
     CDS             complement(2363..>3118)
                     /gene="pcaD"
                     /locus_tag="VF308_06370"
                     /EC_number="3.1.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047570 - 3-oxoadipate enol-lactonase
                     activity [Evidence IEA];
                     GO_process: GO:0042952 - beta-ketoadipate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoadipate enol-lactonase"
                     /protein_id="HEX7436310.1"
                     /translation="LQGKGPAIVMSHALGLDLHLWDDLAAALAATHEVLRYDHRGHGG
                     SALPPGPYSLDDLVADAARLIREWGRGPVVWVGLSMGGMVGQGLAIRHPDLVRGLVLA
                     NTSARYPEAAKAMWAERIAKVEHGGLAAIADMVMERYFHAGFRAAHPQVVDRFRRTLL
                     ATDPSGYVACSHAVGGVDWLDQLGRIACPTLVIAGAEDVGAPVAMAQAMAERIAGAEL
                     AVIAGAAHLSVTEQPAVFSDHLQRFLGRLQPTI"
BASE COUNT          485 a         1062 c         1098 g          473 t
ORIGIN      
        1 cgaggggttc gtgacgcaac cgcggacgaa caggttcttg tcggccttct gcgccgcggc
       61 ggcccagttg gcgaggctcg ggctgcccgg aaagaaggcg agaaacagca ccgcctgctt
      121 ggcccctgcg atcagcccgg cgacttcgtc catgtcgggc gggcgctttt cggttttcgt
      181 gttgctgccg cgcagcttcg gcgtgttggg cgagaaccag ctcgtcagcg tgctgccggg
      241 gggcgagcgc gatgagtttc gatttcgcgt cccaggcgcg cagggacgcc gcctgcagcg
      301 ccttcggatc ggcgcccgcg ctcgtggtgt cggctgcgag ctgatgccag tagtcgagat
      361 agcgcttcgc cagcgcgggt tcctcgcaga cgatggtgtt gttggtctgt gcgcacaggc
      421 cggtcgaggt ccagttggtc gagccgaaca ggaccgcgct cgcatggccg gtgcggttca
      481 catggacgac gaacttgttg tggccgatct ggttggcggg cagcatgcgg ctcagaagca
      541 cacccgcggt cttggcgagc cgggcgcgcg aaagcgcatt gccgtcggtg acggcgctcg
      601 cgctctgctt gtcgctggcc gacggattgg agagcacgag atgcagcttc ttgcccgccg
      661 cctcgagtgc cgagacgagc tcctcgtcgc cgagctcgta gagggccgca tagagcttgc
      721 ctcccgactg cgcgcgctgc acgaagccga gcagggcccc ggtcatgtcg ccggccaggc
      781 tcttgcgcag cgcattgccc ggttggcgga tcaggtcgag cagcttgtag gaggacggag
      841 cgccgttcag ggcctgcgag acgtgctgcg tcgagatcag gccacgattg aagtacgcat
      901 gcagcttcgg cgcgaccact ggcgatatct cgacctcgtt ggacaccgcg aaagcaagcg
      961 ccatcggcac gagctggccc ggctggcctt cgagcgggac gatcttgtag cgaaacctgc
     1021 gctggccggt ctggtcggcg acgagacgcg cgtacggatc cttccagtag aacttctgga
     1081 ccgggaactc ggccgtcgtc tggcccggcg tgcgcttgaa ggtcggaaac accgccatcg
     1141 acggcagcgc cgtctcagcg cccgccgcgt cgatgcggta gaccgcgaaa cccatgcagc
     1201 cctcgagccg ctggccgtag ctccaggcga ccacgatcac gtcgttgtcg gaaaatgcga
     1261 tcgcgttctg catggcgtct cccgtgccgg agccgtgaat cttgcgcccg attcaggccg
     1321 gcgtcacgac cccgcgcagc agcgcagcac catgcgcccg ttgatcgcgc cccgggccat
     1381 gcgctcgaac acgtcgttga tctgctcgag cggcgcttcc tcgatgcgac agcggagctt
     1441 tccggcgacc gccagatcga gcgtcgcgcg caggtcgtcg cgggtgccga cggcggcgct
     1501 gacgatgcgc aactcagcgc cgacgaacgc cagcgcctgg aagccgagcg gctccgccgg
     1561 caggcccacg accgccaagg tgcctgcggg ccgcaagcac ttgagggcca tgtcgtaggc
     1621 cgccttcgcg gccgaggtga cgaccgcgac gtgaaccccg ccgagcttgc gcacggcctt
     1681 gacggtgtcg gggtcggtga ccttgaagac gtgcgcggcg ccgaactcgc gggccagcgc
     1741 cagcttgtcg tcgctgacat cgaggccgat cacttcggcg ccgaaagcgc gtgcgacctg
     1801 caccgcgagg tgcccgaggc cgccgacgcc gaacacggcg acgcgctgcc cgggcccggc
     1861 gccggcgttc ttcagcgccc gatacacggt gaccccggcg caaaaaagcg gcgccgcttc
     1921 ggccgaggtg aggctggcgg gaatcggcag cgcgaactcc gccttcgcgc gcatgaattc
     1981 cgcatagccg ccgtcgacca tcatcccggt gaccacgccc ttgcggcaca ggttctcgag
     2041 gccttcgcgg cactgttcgc aaacgccgca ggccgagtgc agccaggcca cgccgacccg
     2101 gtcgccgacc gcgaggtgct cgaccgcgga acccttggcg acgacccggc cgatgacttc
     2161 atgaccggga atcacccgcg ccttcgtcgc cgcgcgaaag cccggccggt cgccctgcat
     2221 gatgtgcagg tcggaatggc aggcgccgca gacctcgact tgcatcagga cttcgtcggc
     2281 ttcgggcacc ggcatcggaa tgtcttcgat gcgaagcggc cggccgaagt cggggaggat
     2341 ggcggctttc atgcgagtcc gttcagatgg tgggttgcag ccgaccgaga aagcgctgca
     2401 ggtggtcgga aaatacggcc ggctgctccg tgacgctcaa atgcgcggcg ccggcgatca
     2461 ccgcgagttc ggcgcccgcg atgcgttcgg ccatcgcctg cgccatcgcg accggtgcgc
     2521 cgacgtcctc ggccccggcg atcacgaggg tcggacaggc gatgcggccg agctgatcga
     2581 gccaatcgac gccacccacc gcatgcgagc acgcgacgta gccgctgggg tcggtcgcga
     2641 gcagcgtgcg acgaaaccgg tcgacaacct gcggatgcgc ggcgcgaaag ccggcgtgaa
     2701 agtagcgttc catcaccatg tcggcgatgg cggcgagccc gccgtgctcg accttggcga
     2761 tgcgctcggc ccacatcgcc ttcgccgcct ccggataacg cgcgctggtg ttcgcgagca
     2821 cgaggccgcg cacgaggtcg gggtggcgga tcgcgaggcc ctgcccgacc atgccaccca
     2881 tcgacaggcc gacccagacc accggcccgc ggccccattc gcggatcagg cgggcggcgt
     2941 cggcgacgag atcgtccagc gaataggggc ccggtggcag cgccgatccg ccgtggccgc
     3001 gatggtcgta gcgcaacacc tcgtgcgtcg cggcgagcgc ggcagcgagg tcgtcccaca
     3061 ggtgcaggtc cagaccgagg gcgtggctca tgacgatcgc cgggcccttg ccctgcag
//
LOCUS       DASVHM010000336         1640 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1251130, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000336 DASVHM010000000
VERSION     DASVHM010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1251130"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1615)
                     /locus_tag="VF308_06375"
     CDS             complement(<1..1615)
                     /locus_tag="VF308_06375"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEX7436311.1"
                     /translation="MRIAYWHRDLTCGFVNRVYREWHGKGRDELVGRTLAEIFGAATA
                     TDRMARVDAVLGGAAQHFEAEEKKADGTQGFSSVHYIPDRQDDEVRGFFVFASDVSEA
                     KKAEQRLQQANAALVHAEAFLRTVADHIPGRVAYWHGDLTCGFMNQVYCEWFGKSREE
                     LLGRSMAEVLGPKRMAVKRSHVQGALAGVEQHFQLDDVRPNGAHETSWFHYIPDRHDG
                     QVRGFFVLASDITELKAAELRLELLNQELVDARNRAEAATVAKSAFLANMSHEIRTPM
                     NAIIGLTHLLLREIQAPVQRQRLGKVTDAAHHLLAVINDILDLSKIEAGKLKLEVADF
                     AVDTMLTRVCTLVADAARAKGLELVIDTDGLPHRLNGDVTRLSQSLLNLLSNAVKFTE
                     KGSVALRCDPVERRADSILVRFAVRDTGIGIAADKLGALFSAFEQADSSTTRRFGGTG
                     LGLSITRHLAGLMGGEVGVESEPGVGSTFWFTARLGHANQEQLTPSAVFQGARALLVD
                     DLPEAREALAEMLRQLGLRVDVAASGLEAL"
BASE COUNT          236 a          559 c          580 g          265 t
ORIGIN      
        1 ctagcgcttc cagacccgat gccgcgacat cgacgcgcaa gccgagctgg cgcagcatct
       61 cggcgagcgc ctcgcgcgcc tcggggagat cgtcgaccag gagtgctcgc gcgccttgga
      121 acactgcgct cggcgtcagc tgctcctggt tcgcgtggcc gagccgggcc gtgaaccaga
      181 aggtgctgcc cacgccgggc tcgctctcga cgccgacctc gcctcccatc aggccggcca
      241 ggtggcgggt gatcgatagg ccgagcccgg tgccgccgaa gcgccgcgtc gtcgagctgt
      301 cggcctgctc gaatgccgag aacagcgcgc ccagcttgtc ggcggcgatg ccgatgccgg
      361 tatcgcgaac cgcgaagcgg acgaggatcg aatcggcccg gcgctcgacc gggtcgcagc
      421 gcagcgcgac cgagcccttc tccgtgaact tgacggcgtt gctgagcagg ttgaggagcg
      481 actgcgacag ccgcgtcacg tcgccgttca ggcgatgcgg cagcccgtcg gtgtcgatga
      541 ccagctcgag ccccttggcg cgggcggcgt cggcgacgag ggtgcagacc cgcgtcagca
      601 tggtgtcgac cgcgaagtcg gcgacctcga gcttcagctt gcctgcctcg atcttcgaca
      661 ggtcgaggat gtcgttgatg acggcgagca gatggtgcgc cgcgtccgtc accttgccca
      721 ggcgctggcg ttgcacgggc gcctggatct cgcgaagcag gagatgcgtc aggccgatga
      781 tcgcgttcat cggcgtgcgg atctcgtggc tcatgttggc gaggaacgcg ctcttggcga
      841 cggtcgcggc ctcggcccgg ttgcgcgcgt cgacgagctc ctggttgagc agctcgaggc
      901 gcagctccgc cgccttcagc tcggtgatgt cggaggcgag cacgaagaag ccgcgcacct
      961 ggccgtcgtg ccggtccggg atgtagtgga accagctcgt ctcgtgcgcc ccgttcggcc
     1021 gcacgtcgtc gagctggaaa tgctgttcga cgccggcgag cgcaccctgc acgtgcgacc
     1081 gcttgaccgc catccgcttg ggcccgagga cctcggccat gctgcggccg agcagctcct
     1141 cgcgcgactt gccgaaccat tcgcagtaga cctggttcat gaatccgcag gtcaggtcgc
     1201 cgtgccaata ggcgactcgc ccggggatgt ggtcggcgac ggtgcgcagg aacgcctccg
     1261 cgtggaccag cgccgcgttg gcctgctgca ggcgctgctc ggctttcttg gcctcgctga
     1321 cgtcggaggc gaagacgaag aagccgcgca cctcgtcgtc ctgccggtcg gggatgtagt
     1381 ggaccgacga gaagccctgc gtaccatcgg ccttcttctc ctcggcctcg aagtgctgcg
     1441 ccgcgccgcc gagaacggcg tcgacgcgtg ccatgcggtc ggtcgcggtc gcggcgccaa
     1501 agatctccgc cagcgtccgg ccgacgagct cgtcgcggcc cttgccgtgc cactcgcggt
     1561 acacgcggtt gacgaagccg caagtcaggt cgcgatgcca gtaggcgatc cgcacgggca
     1621 agttgtcggc caccgtgcgc
//
LOCUS       DASVHM010000337         5653 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_602686, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000337 DASVHM010000000
VERSION     DASVHM010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5653
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_602686"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1011)
                     /locus_tag="VF308_06380"
     CDS             complement(<1..1011)
                     /locus_tag="VF308_06380"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HEX7436312.1"
                     /translation="MKRLFCLLLVSLALPGAALAQTAPPELAAKSYLLLDLTSNQALA
                     QRDADGAVDPASLTKLMTAYVVFTAIRDRKLSLEQTLPVSKRAWAERKGGGSLMFIDT
                     TMTPRVDELLRGLIVQSGNDASVALAEGVGGSVEEFVAMMNRQAQAWGLKNTSFTNVT
                     GLTEAGHKSTARDLAAIATHIIRDFPEFFPYYSIKEYKYNNIVQPNRNLLLRRDPTVD
                     GMKTGYTEAAGYCLMATAQRDFPNLGAGGTESGKRRLLAVVLNTTSMEARANEAQKLL
                     NWGYQAFDTMRLFDDGKPIVSPPIWKGKVNEARLGTAGGVFVSVPKGEGGKLQTKVER
                     TDP"
     gene            complement(1060..1692)
                     /locus_tag="VF308_06385"
     CDS             complement(1060..1692)
                     /locus_tag="VF308_06385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX7436313.1"
                     /translation="MNPRTVVQQIAGPAGRIECAIDAPEGAARGVAVVCHPHPQFGGT
                     MDNKVVQTLARAFVQLGWRSARFNFRGIGASQGAWDEGRGEVDDALAVLSAFRSEAAD
                     TASPFLLAGFSFGGYVAAEAASRLPEGGKPERLVLIGPSTEKHRVANVPHDTVVIHGE
                     TDDVVPLAATFDWARPQSIPVLVFPGVGHFFHGRLGLLKAVVMRQLDGPR"
     gene            complement(1709..2035)
                     /locus_tag="VF308_06390"
     CDS             complement(1709..2035)
                     /locus_tag="VF308_06390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S) ferredoxin domain-containing protein"
                     /protein_id="HEX7436314.1"
                     /translation="MSYYERHIFFCLNQRDNDEACCAEHDAQAAFDHCKSRIKGERLN
                     GPGKIRVNKAGCMDRCAGGPVAVVYPEAVWYTYVDASDIDEIVDSHLKNGRIVERLLL
                     PPNVGR"
     gene            complement(2058..3161)
                     /locus_tag="VF308_06395"
     CDS             complement(2058..3161)
                     /locus_tag="VF308_06395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEX7436315.1"
                     /translation="MPRHRSSAVPLTWLYAGLIVYASLYPFSGWRVPGHPPLAFLAAP
                     WWHWWTAFDLVSNLLGYMPLGALMFGALVRTGSGAPRAALLTTLAGTALSLSMETLQN
                     FLPQRVASNVDLALNALGTTCGAALGALVHRYGWVDRWQATRDLWFIPRSAGGLALLL
                     LWPIGLLFPTSVPFGLGQVLGRLRDLLVALLQDTAGQPWVEGWTGTGPPSLGAAGELA
                     LVVLGLLAPCLVAFTIARPGWRRVVFALGAAALGCAATTLSIALNFGPDHALAWVTPQ
                     VMVALAVGTGAAALLSLAPRRVAAGFGLMALTALVMLVARAPADPYYAQSLQAWEQGR
                     FIRFHGAAQWVGWAWPYAALTYLLVRVAAREQG"
     gene            complement(3188..3628)
                     /locus_tag="VF308_06400"
     CDS             complement(3188..3628)
                     /locus_tag="VF308_06400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HEX7436316.1"
                     /translation="MSSSFLWVKALHIVFVASWFAGLFYLPRLFVNLRTVPADSHAER
                     ERLLMMARKLYRFSSLLMIPAVALGLVLWWGYGIGKGPHAYWLHAKLLLVVGALGYHH
                     ACRTLLRKFEQFANLRSERWFRVFNESAVLLFAAIVVLAVVKPF"
     gene            3718..4722
                     /gene="hemB"
                     /locus_tag="VF308_06405"
     CDS             3718..4722
                     /gene="hemB"
                     /locus_tag="VF308_06405"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEX7436317.1"
                     /translation="MYTPPPFPASRPRRLRRDESTRALVAESRLATSDLILPVFVLDG
                     HGTAQDVASMPGVQRMTLDRLLPVAEECVQRGIPVMALFPVLDPSLKSADGREALNPQ
                     GLIPRIVGELKRRFPELGLMADVALDPYTTHGQDGLLDDTGYILNDETVAVLTQQALV
                     QAAAGVDIVAPSDMMDGRIGAIRNALEERGYIHTRIMAYSAKYASAFYGPFRDAVGSA
                     ANLGKGNKKVYQMDPANSDEALREVALDLAEGADMVMVKPGMPYLDIVRRVKDTFRVP
                     TFAYQVSGEYAMLKAAAENGWLAHDAVMMESLLAFKRAGADGVLSYFALEAARLLQTR
                     "
     gene            4739..>5653
                     /locus_tag="VF308_06410"
     CDS             4739..>5653
                     /locus_tag="VF308_06410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HEX7436318.1"
                     /translation="MRIFHINGDQFAELEALPDALPDGGYLWLASARREFEVRGGEIQ
                     AVLQRWTGGQLVDLHVSDLLNNQLPSHFEYTSWYDLLVFRRLAAGAGTERLFIDNHKG
                     TLASARAALAAIDTSPVGFAVFEHVLLTVHPTDCQVRDFFVQRLQAQIPSDSRGGTRT
                     PTSPADLMLRMVNYMVDSYLELRRLLTRQLDYLQQQLFEPSGNFNSWRMLLESRAALH
                     LLEDTCEDQRAAIVEWIDALDEWPEASDPAARRDRELLRVRSRDVLEHIERVLTHVRR
                     LETTAETAVQMHFSAQSHRTSDIMRVLTV"
BASE COUNT          965 a         1941 c         1928 g          819 t
ORIGIN      
        1 cggatcggtg cgctcgacct tggtctggag cttgccgcct tcgcccttgg gaacgctcac
       61 gaacacaccg ccagccgtgc cgagccgggc ctcgttgacc ttgcccttcc agatcggcgg
      121 cgaaacgatc ggcttgccgt cgtcgaagag gcgcatcgtg tcgaaggcct gatagcccca
      181 gttcagcagc ttttgcgctt cgttggcgcg cgcctccatc gacgtcgtgt tcaacaccac
      241 cgcgagcagg cgccgcttgc ccgactcggt gccgcccgcg ccgaggttgg ggaagtcgcg
      301 ctgcgccgtt gccatcaggc aatagccggc cgcctcggtg tagccggtct tcatgccgtc
      361 gaccgtcggg tcgcggcgca gcagcaggtt gcggttcggc tgcacgatgt tgttgtactt
      421 gtattccttg atcgagtagt acgggaagaa ctcgggaaag tcgcggatga tgtgcgtcgc
      481 gatcgcggcg aggtcgcgcg cggtgctctt gtggccggcc tcggtcaggc cggtgacgtt
      541 cgtgaacgag gtgttcttga gtccccacgc ctgggcctgc cggttcatca tcgcgacgaa
      601 ctcctcgacg ctgccgccca cgccctcggc gagcgccacc gaggcgtcgt tgccgctctg
      661 cacgatgagg ccgcgcagga gctcgtcgac cctgggcgtc atcgtcgtgt caatgaacat
      721 cagcgagccg ccgcccttgc gctcggccca tgcccgcttg gaaacaggca gcgtctgctc
      781 gagcgagagt ttcctgtcgc ggatcgcggt gaagacgacg taggccgtca tcagcttggt
      841 gagcgatgcc ggatcgaccg ccccgtcggc atcgcgctgc gccagcgcct ggttgctggt
      901 gagatcgagc agcaggtagc tcttggccgc caattcgggc ggcgcggtct gcgccagggc
      961 ggcgcccggc agggcgaggg agacgagcag caggcagaac aggcgtttga tcatcggaaa
     1021 gttggagtca gagcgaaaag ggccgcgggg ctttcggtgt cagcgcgggc catcgagctg
     1081 gcgcatgacg acggctttca gcagtccgag ccgcccatgg aagaaatggc cgacgcccgg
     1141 aaagacgagc accggaatcg attgcggacg agcccagtcg aaggtcgccg cgagcggcac
     1201 cacgtcatcg gtttcgccgt ggatcacgac cgtgtcgtgc ggcacgttcg caacccggtg
     1261 cttctcggtc gaagggccga tgagtaccag gcgttcgggc ttgccgccct cgggcagccg
     1321 gctcgccgct tcggccgcga catagccgcc gaaggagaag ccggcgagca gaaagggcga
     1381 cgcggtgtcg gccgcctcgg accggaacgc cgaaagcacg gcgagcgcat cgtcgacctc
     1441 gccgcgcccc tcgtcccagg caccttgcga ggcgccgatg ccgcggaaat tgaagcgcgc
     1501 gctgcgccag cccagttgca cgaaggcgcg cgccagagtc tgcacgacct tgttgtccat
     1561 cgtgccaccg aactgcgggt gcggatggca gacgaccgcg acgccacgcg ccgcgccttc
     1621 cggcgcgtcg atcgcgcatt cgatgcggcc ggccgggccg gcgatctgct ggacgaccgt
     1681 gcgaggattc atcaagaccg gcgcggcatc agcggccgac gtttggcggc agcagcagcc
     1741 gctcgacgat gcgcccgttc ttcaggtgcg aatcgacgat ctcgtcgatg tcgctcgcgt
     1801 ccacgtaggt gtaccagacg gcctcgggat agaccacggc caccggcccg ccggcgcagc
     1861 gatccatgca accggccttg ttgacccgga tcttgcccgg gccgttcagc ctctcgccct
     1921 tgatgcgcga cttgcaatga tcgaacgccg cctgcgcgtc gtgctcggcg cagcaggcct
     1981 cgtcgttgtc gcgctgattg agacagaaga agatgtggcg ctcgtagtag ctcatcctgg
     2041 cattctatga acacccatca cccttgttcg cgcgcggcca cgcgcacaag caggtaggtg
     2101 agcgccgcgt agggccaggc ccagccgacc cactgcgccg cgccatgaaa acggatgaag
     2161 cggccctgct cccaggcctg caggctttgc gcgtagtaag ggtcggccgg cgcgcgcgcc
     2221 accagcatga cgagcgcggt cagcgccatc agtccgaaac cggcggcgac gcgacgcggc
     2281 gccaggctga gcaaggcggc ggcgccggtg ccgacggcga gcgcaaccat cacctgcggc
     2341 gtgacccacg ccagggcatg atccggaccg aaattgaggg cgatcgagag cgtcgtcgca
     2401 gcacaaccga gcgcggcggc gccgagcgcg aagacgaccc ggcgccagcc cggcctcgcg
     2461 atcgtgaagg cgacgaggca gggcgcgagc agaccgagca ccaccagcgc gagttcgcca
     2521 gccgccccga gcgagggcgg cccggtaccg gtccagccct cgacccacgg ctgcccggcg
     2581 gtgtcctgca gcagcgcgac cagcaggtcg cgcaggcgcc ccagcacctg gccgagaccg
     2641 aacgggaccg aggtcggaaa cagcaggccg atcggccaga gcaggagcag cgcaagaccg
     2701 cccgcgctgc gcgggatgaa ccagaggtcg cgcgtggcct gccagcgatc gacccaaccg
     2761 tatcgatgca ccagcgcccc cagcgcggcg ccgcacgtcg tgccgagcgc gttgagagcg
     2821 agatcgacgt tcgacgcgac ccgctgcggc aggaagttct gcagcgtctc catcgacaac
     2881 gacagcgccg ttccagccag cgtcgtcagc agcgcggccc tcggcgcacc cgagccggtg
     2941 cgcaccagcg cgccgaacat cagcgccccg agcggcatgt agccgagcag gttggagacg
     3001 aggtcgaagg cggtccacca atgccaccag ggcgccgcca ggaaggcgag cggcggatgg
     3061 cccgggaccc gccagccgct gaacgggtag aggctggcgt agacgatgag ccccgcgtac
     3121 agccaggtca gcggtacggc ggaactgcgg tggcgcggca tcgggaggag gcgtcaatcc
     3181 cgcagggtca gaacggcttg acgacggcca gcacgacgat cgccgcgaag agcagcaccg
     3241 ccgattcgtt gaagacccgg aaccagcgct cgctgcgcag gtttgcgaac tgctcgaact
     3301 tgcgcagcag cgtgcggcag gcgtggtggt agccgagtgc gccgaccacg agcagcagct
     3361 tggcgtgcag ccagtacgca tgcgggccct tgccgatgcc atagccccac cacagaacga
     3421 ggccgagggc gacggccgga atcatcagca ggctcgagaa gcggtagagc ttgcgcgcca
     3481 tcatcaggag gcgctcgcgc tcggcatggc tgtcggccgg caccgtcctc aggttgacga
     3541 agaggcgcgg aagatagaag aggccggcga accagcttgc gacgaacacg atgtgcaggg
     3601 ccttgaccca gaggaacgaa ctgctcatgg gccgattatc gcggggcgtt gccgctatca
     3661 ttcccgggct tttgcatgcg gcccctcgcc ccgaggcgag ccggtccccg acgaatcatg
     3721 tacacgccac cgccctttcc cgcaagccgt ccgcggcgcc tgcgccgcga cgaatcgacg
     3781 cgcgcgctcg tcgccgagag ccgcctcgcg acgagcgacc tgatcctgcc ggtgttcgtg
     3841 ctggacggcc atggcacggc gcaggatgtc gcctcgatgc cgggcgtgca gcgcatgacc
     3901 ctcgaccgcc tgctgccggt cgccgaggaa tgcgtgcagc gcggcattcc ggtgatggcg
     3961 ctcttcccgg tgctcgaccc atccctcaag agcgccgatg gccgcgaagc gctgaacccg
     4021 cagggactga tcccgcgcat cgtcggcgaa ctgaagcggc gcttccccga actcggcctg
     4081 atggccgatg tcgcactcga tccgtacacg acgcacggcc aggacggcct gctcgacgac
     4141 accggctaca tcctcaacga cgagaccgtc gccgtgctga cgcagcaggc gctggtgcag
     4201 gccgcggccg gcgtcgacat cgtcgcgccg agcgacatga tggacgggcg gatcggcgcg
     4261 atccgcaatg cgctcgagga gcgcggctac atccacaccc ggatcatggc ctacagcgcc
     4321 aaatacgcga gcgccttcta cggcccgttc cgcgacgcgg tcggctcggc ggcgaacctc
     4381 ggcaagggca acaagaaggt ctatcagatg gacccggcga acagcgacga ggcgctgcgc
     4441 gaagtggcgc tcgacctcgc cgaaggcgcc gacatggtga tggtcaagcc cggcatgccg
     4501 tatctcgaca tcgtgcgccg tgtcaaggat acgttccgcg ttccgacctt cgcctaccag
     4561 gtgagcggcg agtacgcgat gctcaaggcc gcggccgaaa acggctggct cgcgcacgac
     4621 gcggtgatga tggaaagtct gctcgccttc aagcgcgccg gcgccgacgg ggtgctgagc
     4681 tacttcgcgc tcgaggcggc gcgcctgttg cagacccgct gacatcggga cctgcggcat
     4741 gcgcatcttc cacatcaacg gcgaccagtt cgccgagctg gaagcgctgc ccgacgcgtt
     4801 gccggacggc ggctacctgt ggctggcgag cgcgcggcgc gaattcgagg tccgcggcgg
     4861 cgagatccag gccgtgctgc aacgctggac cggcggccag ctcgtcgacc tgcacgtttc
     4921 cgatctgctg aacaaccagt tgccgtcgca cttcgagtac acctcctggt acgacctcct
     4981 ggtgtttcgg cggcttgcgg ccggcgccgg caccgagcgc ctgttcatcg acaaccacaa
     5041 gggcacgctc gcctcggcgc gggccgcgct cgcggcgatc gataccagcc cggtcggctt
     5101 cgccgttttc gagcacgtgc tcctgaccgt ccaccccacc gactgccagg tccgcgactt
     5161 cttcgtgcag cgcctccagg cccagatccc gagcgacagc cgtggcggca cacgcacgcc
     5221 gacgagtccg gccgatctga tgctgcgcat ggtcaactac atggtcgaca gctacctcga
     5281 gctgcgccgg ctcctgacgc gccagctcga ctacctgcag cagcagttgt tcgagccgag
     5341 cggcaacttc aacagctggc gcatgctgct cgaatcgcgc gccgccctgc acctgctcga
     5401 ggacacctgc gaagaccagc gtgccgccat cgtcgaatgg atcgacgcgc tcgacgaatg
     5461 gcccgaggcg tccgatccgg cggcgcggcg cgaccgcgag ttgctgcggg ttcgatcgcg
     5521 cgatgtgctg gagcacatcg aacgggtgct gacgcatgtg cgccgcctcg agaccacggc
     5581 cgagacggcg gtgcaaatgc acttctcggc gcagagccac cgcaccagcg acatcatgcg
     5641 cgtgctgacg gtg
//
LOCUS       DASVHM010000338         1906 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_816990, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000338 DASVHM010000000
VERSION     DASVHM010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1906
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_816990"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..1333
                     /locus_tag="VF308_06415"
     CDS             155..1333
                     /locus_tag="VF308_06415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013539836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7436319.1"
                     /translation="MDLNFTPEELAFRAQIHAWVAEHLPKEISYKVHNALRLSKEDLQ
                     RWARILGKQGWHGWAWPKEFGGPGWNAIQRHLFEEECALAGAPRVIPFGPVMVAPVIM
                     AFGSPEQQRRHLPGIMSGEVWWSQGYSEPGSGSDLASLRTKAERRGDYYLVNGQKAWT
                     TLGQHGDWIFCLVRTSSDGKPQTGISFLLIDMKSPGITVRPVITMDGEHEVNEVWFDN
                     VEVPVDNLVGEENKGWTYAKYLLAHERTNIADVNRAKRELERLKRISKAEGVYEDGRF
                     RDEIAKLEVEIVALEMMVLRVLSAEKSGKQSLDVAGLLKIRGSEIQQRYSELMMLAAG
                     PAAVPYVREAMEAGWQGNQVGGTLVTPLAGTYFNMRKTTIYGGSNEVQRNIVAQTVLG
                     "
     gene            1348..>1906
                     /locus_tag="VF308_06420"
     CDS             1348..>1906
                     /locus_tag="VF308_06420"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7436320.1"
                     /translation="MDFDFSDEQEMLRDSVRKWVNKGYDLERRRAIVKAGGFSADAWR
                     EIADLGLTGLQVPEAQGGLGFGAVEAMVVMEELGRGIVLEPYAAVALVAVSLLKAGHA
                     PSAALWLQGIAEGKERVVLAHQERGARYRLAHVSTKAQNAGGTWQLTGKKTVVPAGAH
                     AGAFIVPARVSGAEDDPAGIALFLVS"
BASE COUNT          346 a          634 c          648 g          278 t
ORIGIN      
        1 ccccgtcgcc agggcggcga tggtcgcccg aaagctgggt gcgcgcatcg gcaccattat
       61 cggcagcggc ccgccgcccc tttcgcacgc gccgcgacgg tcaaatcgca cgatcgtgct
      121 aaaacaacgc ctgtcaccgc gaccggagcc ccggatggac ctgaacttca ccccagagga
      181 actcgccttt cgcgcccaga ttcatgcctg ggtggccgag catctgccca aggaaatcag
      241 ctacaaggtg cacaacgcgt tgcggctctc gaaagaggat ctgcagcgct gggcccgcat
      301 cctcggcaag cagggctggc acggctgggc ctggccgaag gagttcggcg gcccgggctg
      361 gaacgcgatc cagcgtcatc tgttcgagga agaatgcgcg ctcgccgggg cgccgcgggt
      421 cataccgttc ggcccggtga tggtcgcgcc ggtcatcatg gcgttcggct cgccggagca
      481 gcaacgccgc cacctgccgg gaatcatgag cggcgaggtc tggtggagcc agggctacag
      541 cgaaccgggc tcgggctcgg acctcgcgtc cctgagaacg aaggccgagc gccgcggcga
      601 ctactacctc gtcaacggcc agaaggcctg gaccaccctg ggccagcatg gcgactggat
      661 cttctgcctg gtgcgcacca gcagcgacgg caagccgcag accggcatca gcttcctgct
      721 gatcgacatg aagagcccgg gcatcacggt gcgtccggtc atcacgatgg acggcgagca
      781 cgaggtcaac gaagtctggt tcgacaacgt cgaggtgccc gtcgacaact tggtcggcga
      841 ggagaacaag ggttggactt acgccaagta cctgctcgcc cacgagcgca ccaacatcgc
      901 cgacgtgaac cgcgccaagc gcgagctcga gcggctcaag cgcatttcca aggccgaggg
      961 cgtctatgaa gacgggcgtt tccgcgacga gatcgcgaag ctcgaggtcg agatcgtcgc
     1021 gctcgaaatg atggtgctgc gcgtgctctc ggccgaaaag agcggcaagc agagcctcga
     1081 cgtcgccggc ctcctgaaga tccgcggcag cgagatccag cagcgttact ccgagctgat
     1141 gatgctcgcc gccggccccg ccgccgtgcc ctatgtgcgc gaagcgatgg aagccggctg
     1201 gcagggcaac caggtcggtg gcacattggt cacaccgctc gccggcacct acttcaacat
     1261 gcgcaagacg acgatctacg ggggctcgaa cgaagtccag cgcaacatcg tcgcgcagac
     1321 tgtcctcggc tgaaccaagg aacgatcatg gatttcgatt tcagcgacga acaggaaatg
     1381 ctacgcgact cggtgcgcaa gtgggtcaac aagggctacg acctcgagcg ccggcgcgcc
     1441 atcgtcaagg cgggcgggtt ttcggccgac gcctggcgcg agatcgccga tctcggcctg
     1501 accgggctgc aggtccccga ggcgcagggt ggcctcggct tcggcgcggt cgaggcgatg
     1561 gtggtgatgg aagagctcgg ccgcggcatc gtgctcgagc cgtacgcggc cgtcgcgctc
     1621 gtcgccgtga gcctgctcaa ggccgggcac gctccatccg ccgcgctctg gctgcagggc
     1681 atcgccgagg gcaaggagcg cgtcgtcctc gcgcaccagg aacgcggcgc gcgctatcgc
     1741 ctcgcgcacg tctcgacgaa ggcacagaac gccggcggca cgtggcagct gaccggcaag
     1801 aagacggtgg ttccggccgg ggcgcatgcg ggcgccttca tcgtgccggc gcgcgtcagc
     1861 ggtgccgagg acgacccggc cggcatcgcc ctctttctcg tctcca
//
LOCUS       DASVHM010000339         1900 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_97095, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000339 DASVHM010000000
VERSION     DASVHM010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1900
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97095"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1900)
                     /locus_tag="VF308_06425"
     CDS             complement(<1..>1900)
                     /locus_tag="VF308_06425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEX7436321.1"
                     /translation="VKTPVIGITGTGGAGKSSLTDELIRRLRLDQNDALQVAVISIDP
                     SRRKSGGALLGDRIRMNAIAPWGDGPRVYMRSLATRDFGSEISAALPDVLAAVKVAGF
                     DLVIVETSGIGQGDAAIVPLVDVPVYVMTPEFGAASQLEKIDMLDFAEFVVINKFDRK
                     GAADALRDVAKQVQRNREAFAKRPDEMPVFGTMASRFNDDGVTALYQAIVPRLAALGL
                     RLAPGTLPRVQTRHSTHQVPIVPASRTRYLADIVDAVRSYKRAALAEPRLAREIQQLR
                     ASARMLFDANPDKTNAFGAVNALADEREARLDPSARRLLAEWPGLRRAYAQDEYVHAV
                     RGREIRTPLNHTTLSGNKVPKVSLPTWEDDGEILKWLMLDNVPGSFPYTAGTFAFKRE
                     NEDPTRMFAGEGDAFKTNTRFKLLSAGMPAKRLSTAFDSVTLYGNDPALRPDIYGKVG
                     NSGVSIATLDDMKVLYSGFDLTSPSTSVSMTINGPAPTILAMFINTAIDQKLDAFRAE
                     KKREPGADEAAGIAAWVKENVRGTVQADILKEDQGQNTCIFSTEFSLKVMGDIAQWFV
                     EHKVRNFYSVSISGYHIAEAGANPISQLAFTLSNGFTFVEAYLARGMHIDDFAPNLSF
                     FFSNGMDPE"
BASE COUNT          273 a          614 c          675 g          338 t
ORIGIN      
        1 actccgggtc catgccgttg ctgaagaaga agctcaggtt cggcgcgaag tcgtcgatgt
       61 gcatgccgcg cgccagatac gcttcgacga aggtgaagcc gttcgagagc gtgaaggcga
      121 gctggctgat cgggttggcg ccggcttcgg cgatgtgata gcccgagatg ctcaccgagt
      181 agaagttgcg aaccttgtgc tcgacgaacc actgtgcgat gtcgcccatc accttgaggc
      241 tgaactcggt cgagaagatg caggtgttct ggccctggtc ttccttcagg atgtcggcct
      301 gcaccgtgcc gcgcacgttc tccttcaccc aggcggcgat tccggccgcc tcgtcggcgc
      361 ccggctcgcg cttcttctcg gcgcggaagg cgtcgagctt ctggtcgatc gcggtgttga
      421 tgaacatcgc caggatcgtc ggcgccgggc cgttgatcgt catgctgacc gaggtgctcg
      481 ggctcgtcag gtcgaagccg gaatagagca ccttcatgtc gtcgagcgtt gcgatcgaga
      541 cgcccgagtt gccgaccttg ccgtagatgt cggggcgcag cgccgggtcg ttgccgtaga
      601 gcgtcaccga gtcgaacgcg gtcgagaggc gcttggccgg catcccggcc gaaagcagct
      661 tgaagcgggt gttggtcttg aaggcgtcgc cttcgccggc gaacatccgc gtcggatcct
      721 cgttctcgcg cttgaacgcg aacgttccgg cggtgtacgg gaacgagccc ggcacgttgt
      781 cgagcatcag ccacttgagg atctcgccgt cgtcctccca ggtcggcagc gagaccttcg
      841 gcaccttgtt gccggagagg gtcgtgtgat tgagcggtgt gcggatttcg cgcccgcgca
      901 ccgcgtggac atattcgtcc tgggcgtagg cgcgccgcag tcccggccat tcggccagca
      961 gccggcgcgc actcgggtcg aggcgcgcct cgcgctcgtc ggcgagcgcg ttgacggcgc
     1021 cgaaggcgtt ggtcttgtcg ggattggcgt cgaagagcat gcgtgcgctc gcgcgcagct
     1081 gctggatctc gcgcgcgagg cgcggctcgg cgagcgcagc gcgcttgtac gagcgcaccg
     1141 cgtcgacgat gtcggccagg tagcgcgtgc gcgaggccgg cacgatcggc acctggtgcg
     1201 tgctgtgtcg cgtctgcacc cggggcaagg ttcccggcgc aaggcgcagg ccgagcgccg
     1261 ccaggcgcgg cacgatcgcc tggtagagcg cggtcacgcc gtcgtcgttg aagcggctcg
     1321 ccatcgtgcc gaacaccggc atctcgtcgg ggcgcttggc gaacgcctcg cgattgcgct
     1381 gcacctgctt ggcgacgtcg cgcagtgcgt cggcggcgcc cttgcggtcg aacttgttga
     1441 tcacgacgaa ctcggcgaag tcgagcatgt cgatcttctc gagctggctc gcggcgccga
     1501 actcgggcgt catcacgtac accggcacgt cgacgagcgg cacgatcgcc gcgtcgccct
     1561 ggccgatgcc cgaggtctcg acgatcacga ggtcgaagcc ggcgactttc accgccgcga
     1621 gcacgtcggg cagggcggcg ctgatctcgg agccgaagtc gcgcgtcgcc agggaccgca
     1681 tgtagacccg aggcccgtcg ccccacggcg cgatcgcgtt catgcggatc cggtcgccga
     1741 ggagcgcgcc gccgctcttc ctccgcgatg ggtcgatcga gatcaccgcg acctgcagcg
     1801 cgtcgttctg atcgaggcgc aggcgccgga tcagctcgtc ggtgaggctc gacttgccgg
     1861 cgccgccggt gccggtgatg ccgatcaccg gagtcttcac
//
LOCUS       DASVHM010000340         1546 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_891858, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000340 DASVHM010000000
VERSION     DASVHM010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_891858"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VF308_06430"
     CDS             <1..318
                     /locus_tag="VF308_06430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436322.1"
                     /translation="VEAMRTIEAWLFRRQPADEIFDFGPYRELLFLYSIARELSEETV
                     GDAIDLLLPLDEPAVDLPLTGRDSPSQFGSWHPRARQQAALDLDISRPAPFEGESKLR
                     QAI"
     gene            complement(295..1461)
                     /locus_tag="VF308_06435"
     CDS             complement(295..1461)
                     /locus_tag="VF308_06435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007865314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEX7436323.1"
                     /translation="MTATPVRTPTVESRLPRVGTTIFTVMSALAAEHGAVNLGQGFPD
                     FDCDPKLVEAVTDAMRRGLNQYPPMTGVPVLREAVSAKIEALYGHRYDQGSEITISAG
                     ATQAILSAILAVVHPGDEVIVLDPCYDSYDPNIVLAGGVAVHVPLTPGSFAPDFERIG
                     ASLTPRTRAIVINTPHNPSATVWSKADMERLAELLRPTDVIVISDEVYEHMVYDGAEH
                     QSVARFPELAARSVVVSSFGKTYHVTGWKIGYAAAPAALSAEFRKVHQFNVFTVNTPM
                     QHGIARYMADPSHHLGLPAFYQGKRDLFRAGLARTRLRALPSRGSYFQCVDYSAVSDL
                     PEEDFCRWLTIDKGVAAIPLSAFYADAFEQRIARFCFAKKDETLALALDRLAQL"
BASE COUNT          239 a          502 c          547 g          258 t
ORIGIN      
        1 gtcgaggcga tgcggaccat cgaggcctgg ctctttcgac gtcagcctgc cgatgaaatc
       61 ttcgacttcg gcccgtaccg ggaactgctg ttcctgtatt cgatcgcacg cgaactctcg
      121 gaagagacgg tcggcgacgc gatcgacttg ctcctgcccc tcgatgagcc ggcggtcgat
      181 ttgccgctca ccggcaggga ctcgccttcg cagttcggaa gctggcatcc gcgcgcgcgc
      241 cagcaggccg cgctcgacct cgacatctcg aggccggcgc ccttcgaggg cgaatcaaag
      301 ctgcgccagg cgatctagcg ccagcgccag cgtctcgtcc ttcttcgcga agcagaagcg
      361 cgcgatgcgc tgctcgaagg cgtccgcata gaacgcggac aaggggatcg ccgccacgcc
      421 cttgtcgatc gtgagccagc ggcagaagtc ctcttcgggc aggtcgctga ccgccgaata
      481 gtcgacgcac tggaagtagc tgccccggct cggcaacgcc cgcaggcgcg tgcgtgcgag
      541 gccggcgcgg aacagatcgc gcttgccctg gtagaacgcg ggcagcccga ggtggtgcga
      601 gggatcggcc atgtagcgcg cgatgccgtg ctgcatcggc gtgttgacgg tgaacacgtt
      661 gaactggtgg accttgcgga actcggcgct gagggcggcc ggcgccgcgg cgtagccgat
      721 cttccagccg gtgacgtgat aggtcttgcc gaagctcgag acgacgacgc tgcgcgcggc
      781 aagctcgggg aagcgcgcga cgctctggtg ttcggcgccg tcgtagacca tgtgctcgta
      841 gacctcgtcg ctgatcacga tcacgtcggt cggacgcagc agttcggcga ggcgctccat
      901 gtcggccttc gaccagaccg tcgcgctcgg gttgtgcggg gtgttgatga cgatcgcgcg
      961 ggtgcgcggc gtcaggctcg cgccgatgcg ttcgaagtcg ggcgcgaagc tgccgggggt
     1021 cagcggcaca tgcaccgcga cgccgcccgc cagcacgatg ttggggtcgt agctgtcgta
     1081 gcatggatcg aggacgatca cttcgtcgcc cggatggaca acggccagga tcgccgacag
     1141 gatcgcctgc gtcgcgccgg cactgatcgt gatctcgctg ccctggtcgt agcggtgccc
     1201 gtagagcgcc tcgatcttcg cgctgaccgc ctcgcgcagc accggcacgc cggtcatcgg
     1261 cgggtactgg ttcaggccgc gccgcatggc gtcggtgacg gcctcgacga gcttcggatc
     1321 gcagtcgaaa tcggggaagc cctggccgag gttgaccgcg ccgtgctcgg cggcaagcgc
     1381 cgacatcacc gtgaagatcg tcgtgccgac gcgcggcagg cggctctcga cagttggcgt
     1441 gcggaccgga gtcgcggtca tcgaattcat cctcagagct ggtagtcgtc cgcctcgccg
     1501 ctcatcgcgc gctcgacgag ggcgcggctg agacggtcgg acgtca
//
LOCUS       DASVHM010000341         2500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_23998, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000341 DASVHM010000000
VERSION     DASVHM010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23998"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..565)
                     /locus_tag="VF308_06440"
     CDS             complement(<1..565)
                     /locus_tag="VF308_06440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436324.1"
                     /translation="MALVGVWLGWRAWRARGAPPVIEEKVVGAGAREEAAAAPALPEA
                     LAPAAPPAPPAVAPAVPAAREPVDEVLALERADRSLWDAAIVLECAPEPLATLTDLLA
                     ASVPRARPPEGGAEAIFAVHFERDDALPVARANPSRLKDLAARRHATAVANGGGGPDA
                     APLGWLGGPASAMLAGTVLGAWTRTRHL"
     gene            complement(595..1752)
                     /locus_tag="VF308_06445"
     CDS             complement(595..1752)
                     /locus_tag="VF308_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX7436325.1"
                     /translation="MRLQSPRRCAALALHGALLLGLSAAAPAASLPVDQLRAPAGFRV
                     ELLTDAVPNARAMALGRYADGRGVLYVGSMRAGNVYAVELDGDRASAVRLVASGLALP
                     AGVAYRAGSLYVSAVSRILRFDAIDDRLANPPSPVVVTDRLPADTHHGAKFIAFGPDG
                     RLYVPVGAPCNVCKPGEQHGVLLRMNADGSGLERIASGIRNSVGFDWNPADKTLWFTD
                     NGRDMLGDDLPSDELNRLERPGQDFGFPYCHQGDTPDPEFGAQRPCSEFVAPVARLGA
                     HVAALGMRFYDGRQFPEAYRNNIFIAEHGSWNRSRKVGYRVVRVVLDRQGRVERHEPF
                     LEGWLQVDAAGRETVRGRPADVLVMPDGALLVSDDEEGAIYRVVYRSGSAE"
     gene            1829..2300
                     /locus_tag="VF308_06450"
                     /pseudo
     CDS             1829..2300
                     /locus_tag="VF308_06450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010464997.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
BASE COUNT          388 a          917 c          859 g          336 t
ORIGIN      
        1 cgaggtggcg cgtgcgcgtc caggcaccga gcacggtgcc cgcgagcatc gccgaggcgg
       61 gtccaccgag ccagcccagc ggcgcggcat cgggcccgcc acccccattg gcgacggcag
      121 tggcatggcg acgcgccgcg aggtccttca gcctcgacgg gttcgcgcgc gccaccggca
      181 gcgcgtcgtc gcgctcgaaa tgcacggcga agatcgcctc ggcgccaccc tccggcggcc
      241 gtgccctggg cacacttgca gcgagcaggt cggtcagcgt tgccagcggc tcgggcgcgc
      301 attcgagcac gatcgccgca tcccacaacg atcggtcggc gcgctccagc gcaaggactt
      361 catcgaccgg ctcgcgtgcg gcgggcacgg ccggcgcgac tgccgggggc gcgggcggcg
      421 cggccggcgc gagcgcttcc ggcagcgcag gcgcggccgc tgcttcctcg cgggcgccgg
      481 cgccgacgac tttttcttcg atgacgggcg gggccccgcg cgcgcgccac gccctccacc
      541 cgagccacac gccgaccagc gccaatgcgg cgacgccaag ccatgcccaa ctgctcattc
      601 ggcactcccc gaccggtaca cgacgcggta gatcgcgccc tcttcgtcat cgctgacgag
      661 cagcgccccg tcaggcatca cgagcacatc ggccggccgg ccccggaccg tttcgcggcc
      721 agccgcatcg acctgaagcc aaccctccag gaagggctcg tggcgctcga cgcggccctg
      781 gcggtcgagc accacacgca ccacgcgata gccgaccttg cggctgcgat tccacgagcc
      841 gtgctcagcg atgaagatgt tgttccgata ggcctcggga aactgccggc cgtcatagaa
      901 gcgcatgccg agcgcggcga catgcgcgcc gagcctggcg accggcgcca cgaactcgct
      961 gcatgggcgt tgcgcaccga actccggatc cggcgtgtcg ccctggtggc aatacgggaa
     1021 accgaaatcc tgtcccggtc gttcgagccg gttcagttcg tcgctcggca gatcgtcgcc
     1081 aagcatgtcg cgcccgttgt cggtgaacca gagtgtcttg tcggccgggt tccagtcgaa
     1141 gccgacgctg ttgcgaatgc cgctcgcgat gcgttccagg ccgctcccat cggcattcat
     1201 gcgcaggagg actccgtgct gctcgcccgg cttgcagaca ttgcagggcg cgcccacggg
     1261 cacgtagagg cggccgtcgg gcccgaaggc gatgaacttc gcgccatggt gggtgtcggc
     1321 cggaagtcga tccgtcacca cgaccggaga cggtgggttg gcgagtcgat cgtcgatggc
     1381 gtcgaagcgc aggatccgcg acacggccga aacatacagg cttcccgcgc gataggcgac
     1441 gccggccggc agggcgaggc ccgaagcgac gagccggacc gcgctcgcgc gatcgccatc
     1501 gagctcgacc gcgtagacat tgcccgcccg catgctgccg acatagagga cgccgcggcc
     1561 gtcggcatag cggccgagcg ccatcgcgcg cgcgttgggc acggcgtcgg tcaggagctc
     1621 gacgcgaaaa cccgcgggcg cgcgcagctg gtcgaccggc aggctcgctg ccggtgccgc
     1681 cgcagaaagg ccgagcagca gcgcgccgtg gagcgccaaa gcggcgcagc ggcgggggct
     1741 ctggagtcgc atgccggaag ttgaccacaa gacggccccc ggcgcgacga tccgggggcc
     1801 gcgatcggcg gcgcccggga gcctgcccat gcccgctgac tccgatcccg ccctcgacgg
     1861 cggatgcacc tgcgctgccg atgacgagcg ccccgctctt cgtccactgt tgccattgcc
     1921 gctggtgcca ccgcgagacc ggcgcatcgt tcgcattgaa cgcgctgatc gaggccgacc
     1981 gcgtcgtgct gctgcgcggc gttgcggaac cggtcgacac tccgtgcgca agcggcaagg
     2041 ggcagaagat cagccgttgc ccgaactgcc ggatcgcgct ctggagcaac tacgccggcg
     2101 ccaaggtccg gttcgtgcgc gtcggcacgc tcgacacgcc ggaccggctg ccgcccaaca
     2161 ttcatatcta caccggctcg aagcagccct ggatcgcgct cgacccgcgc gttcccgcgg
     2221 tcccggcgta ctacgatctg acggatcatt ggccgaaagc cagtctcgag cgccgccatg
     2281 cgctgcgcgc cgccgcgtga cgggccgcga cgatcttctt tcgacatgag acctgtgcgc
     2341 ggcagcgcga ctgtcggaaa atgtccggcg cgggcgcccg ctcgaagaac caatccgcaa
     2401 ccgagggctc caagtcgcat gaaaaccgct catcgccacg cgctcctcgc cgcgcttgcc
     2461 gtttgcgctg cgccggcgct ggcgcaggac acggccaccg
//
LOCUS       DASVHM010000342         5988 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_97331, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000342 DASVHM010000000
VERSION     DASVHM010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5988
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97331"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..253)
                     /locus_tag="VF308_06455"
     CDS             complement(<1..253)
                     /locus_tag="VF308_06455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436326.1"
                     /translation="MKRLHLAAGALLLAAHLGTGATEVAYLTEPLHHSMQKVSAAGDA
                     RSYRMDAARHIYAAYAPRIFKGRLPPLIHAVVVVETTVDA"
     gene            complement(439..1521)
                     /gene="ugpC"
                     /locus_tag="VF308_06460"
     CDS             complement(439..1521)
                     /gene="ugpC"
                     /locus_tag="VF308_06460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013543742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HEX7436327.1"
                     /translation="MASVSFRNVEKSFGSTRIIHGIGFDIADGEFTVLVGPSGCGKST
                     LLRMLAGLEEISGGTIAIDDHVVNDIESKDRDIAMVFQSYALYPHMTVGDNMGFSLRL
                     RKADPALTRARVANAARILNLGPYLERYPRELSGGQRQRVAMGRAIVRDPKVFLFDEP
                     LSNLDAKLRVAMRAEIKALHQRLKTTTVYVTHDQVEAMTMADRIVVMQEGRIEQIGTP
                     LELYDHPANLFVAQFIGSPAMKVVIGVVRRGQGQAWVEVEGGVRWPIAPTSPGQDGQP
                     VAYGVRPGDLGVGGGADSRSVPAEVIVVEPTGAETELLVRVGASQFVVVIHGRTQAQP
                     GETIHLSIDTGAVHLFDPTSGIALTA"
     gene            complement(1614..2465)
                     /locus_tag="VF308_06465"
     CDS             complement(1614..2465)
                     /locus_tag="VF308_06465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEX7436328.1"
                     /translation="MKASTLKKASAEARLLLIGIPLAIWTLLPIYHMVLFALSPKEQA
                     VSGKLWPEHPTLHNFSMVFHQQHHYLSHFWLQMWNSVLIAVAVGAITLFIATAAAFAI
                     SRLRVKGGRTIMNLALFTYFIPAAFLAVPMYKTMGNYGLLNSQWALILAMVTIATPYS
                     IWVLKQASDKLPLELDEAARIDGATPLQLFRLVYLPLMMPSLVAVGTYALLLAWNEYL
                     YAFLLLSDDKSTTLGVALGSFLSADDSPWELLMTTGLIYALPPAAIYYVFKRYMVGGL
                     TAGAVKS"
     gene            complement(2462..3352)
                     /locus_tag="VF308_06470"
     CDS             complement(2462..3352)
                     /locus_tag="VF308_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007868440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEX7436329.1"
                     /translation="MSTLALDGAGQPKRQSAPVGPTRKRLTPWQAWGMVLVAPYVLIF
                     AVFVLYPIGYGLWLARHPASYVKLFDDPVFARTVVNTLIFLIVGINLKMLLALFLSGF
                     FVRTWPWIKWLSLLFILPWAVPSIPTILSLRFMLNPEWGIINSTIFRLTGADGPNWLN
                     NPQIALALSILVHIWKSLPFWTLILIAGRLAIPAEMYEAASVDGATSWQKFKFITWPS
                     LQTLYLTSSILSMIWTLGDFNSVYLLTGGQPADQTHVLATLGLRYLRLDQVDMSLATV
                     VCAMPLVLPLVYFMMKRLSR"
     gene            complement(3368..4735)
                     /locus_tag="VF308_06475"
     CDS             complement(3368..4735)
                     /locus_tag="VF308_06475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007868441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436330.1"
                     /translation="MRKTIAGVIAVCALAFGGHALAQEKLTVWWVKGFYKSEDDALFE
                     AIKKFEAKSGVKVELSQYPIQDMIPKTVAALDAGSPPDVAYADVYDFQVTGKWAFDGK
                     LEDISDILTPMKARFLKNTLETTWLYDDKAKKRAYYAFPLKQQTMHVEIWLDMLQAAG
                     FKEADIPTKWSDYWSFWCDKVQPAYRQKTGSRVFAIGQPMGVDSSDSFYSFLTFMDAY
                     NVKLVDDNGKLLVDDPKVKAGLVSALKDYTDVAVKGCTPPSSTSWKDPDNNVAFFNKT
                     TLMTHNATISIAAKWLDDANNEALNAEQRATAKKNYDELIRTAGFPNKPDGSKMVYRA
                     AVKTGVVFSAAKNKARAKEFVAFLLQDENLTPYVEGSLGRWFPVVTTATQRPFWQADP
                     HRRSVFNQFGAGTVNFEFTKNYKFTIVNNENVWAKAMNRVVNDKVSVDQAVTEMIARI
                     KALAG"
     gene            complement(4880..5680)
                     /locus_tag="VF308_06480"
     CDS             complement(4880..5680)
                     /locus_tag="VF308_06480"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009515483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HEX7436331.1"
                     /translation="MNDRVATELTPFVRRGVDKRGVVTLTLDRPQSFNALSEGMLAAL
                     QAELDAVAIDETARVVVIAAEGKAFCAGHDLKEMRAAPSLAYYEDLFAKCARVMLTIQ
                     RLPVPVIARVQGIATAAGCQLVAACDLAVAADVARFAVSGVNLGLFCSSPSVALARNL
                     ARKPAFEMLVTGEFISAEEARARGLVNRVAAAEALAGAVESLVATIVAKPRAAIALGK
                     ALFYRQVESGIEAAYEDAGRTMACNMMEADTLEGVQAFIDKRKPAWPS"
     gene            complement(5701..>5988)
                     /locus_tag="VF308_06485"
     CDS             complement(5701..>5988)
                     /locus_tag="VF308_06485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004635851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HEX7436332.1"
                     /translation="SSLEVEDALYRHADVMACAVVARPDAKWGEAPLAFVELRAGATV
                     DAPGLVAHCKSLLAGYKVPREIRFEPIPKTSTGKIQKFQLRQRARSAAAFE"
BASE COUNT          996 a         1913 c         2080 g          999 t
ORIGIN      
        1 tggcgtcgac cgtcgtctcg acgacgacga cggcgtgaat caacggcggc agccggccct
       61 tgaagatgcg cggcgcgtac gcggcgtaga tgtggcgtgc cgcgtccatc cggtacgagc
      121 gcgcatcgcc ggcggccgag accttctgca tggagtgatg cagtggctcg gtgaggtagg
      181 cgacctcggt cgctccggtt cccaggtgag ccgctaacag cagtgcgccg gcggcgaggt
      241 gaagacgctt catgacgatc tccgcgcggc ttcgacaccg cagaaccgag cggcttcgcc
      301 accgtcatgg cgcaatcagc cgatggggct cagcgtagga gatcgccttg tcgccgtgtc
      361 ggaaccgtcc taccggccga ccggtggccg caaccgagcg tggtgtccgt cacggtgtca
      421 gccgtaacgg gatttgtctc aggcggtgag cgcgataccg ctcgtcggat cgaagagatg
      481 gacggcgccg gtgtcgatcg acagatggat cgtttcgccg ggctgggcct gcgtgcggcc
      541 atggatgacg acgacgaact gcgatgcgcc gacgcggacc agcagctcgg tctccgcgcc
      601 cgtcggctcg acgacgatga cttcggccgg caccgagcgc gaatcggcac cgccgccgac
      661 gccgaggtcg cccgggcgca cgccgtaggc gacgggctga ccgtcctggc cgggactcgt
      721 cggcgcgatc ggccagcgaa cgccgccttc gacctcgacc cacgcctgcc cctggccacg
      781 acgaacgacg ccaatgacga ctttcatcgc cggcgagccg atgaactggg cgacgaacag
      841 gttggccgga tggtcgtaga gctcgagcgg cgtgccgatc tgctcgatgc gcccttcctg
      901 catgacgacg atgcggtctg ccatcgtcat cgcctcgacc tggtcgtggg tgacgtagac
      961 cgtcgtcgtc ttcagccgct ggtgcagcgc cttgatctcg gcgcgcatcg ccacgcgcag
     1021 cttggcgtcg aggttggaga gcggctcgtc gaacaggaag accttgggat cgcggacgat
     1081 cgcgcggccc atcgcgacgc gctggcgctg cccgcccgag agctcgcgcg gatagcgctc
     1141 gaggtagggg ccgaggttga ggatcctggc ggcgttggcg acccgcgccc tggtcagcgc
     1201 cggatcggcc ttcctcagcc tcaggctgaa gcccatgttg tcgccgaccg tcatgtgcgg
     1261 atagagcgcg tagctctgga acaccatggc gatgtcgcgg tccttcgact cgatgtcgtt
     1321 gacgacgtgg tcgtcgatgg cgatcgtccc gccgctgatc tcctccaagc cggcgagcat
     1381 tcgcagcagg gtcgacttgc cgcaacccga cggcccgacc aggacggtga actcgccgtc
     1441 ggcgatgtcg aagccgatgc cgtggatgat cctggtcgag ccgaagctct tctcgacgtt
     1501 gcgaaacgac accgaggcca tcaggccagg cctcccgccg ggccgcccca agggaggcct
     1561 gcgccccctc ggggggcatc gagcgcgagc gagcgtgggc gcatcatgac tgctcagctc
     1621 ttgacggcgc cggccgtgag gccgccgacc atgtagcgct tgaagacgta gtagatcgct
     1681 gccggcggca aggcatagat gaggccggtc gtcatcagca gctcccacgg cgagtcgtcg
     1741 gccgagagga agctgccgag ggcgacgccg agcgtcgtgc tcttgtcgtc ggacagaagg
     1801 aggaatgcat agagatattc gttccacgcc agcagcagcg cataggtgcc gacggcaacc
     1861 agcgacggca tcatcagcgg caggtagacg aggcggaaca gctgcagcgg cgtcgcgccg
     1921 tcgattcgcg ccgcctcgtc gagctcgagc ggcagcttgt cggacgcctg cttcaggacc
     1981 cagatcgagt acggcgtcgc gatcgtcacc atcgccagga tcagtgccca ctggctgttg
     2041 aggaggccgt agttgcccat cgtcttgtac atgggcacgg cgaggaaagc cgccgggatg
     2101 aagtaggtga agagcgccag gttcatgatc gtgcggccgc ccttgacgcg caggcggctg
     2161 atcgcgaacg ccgccgcggt ggcgatgaag agcgtgatcg cgccgacggc gacggcgatc
     2221 agcaccgagt tccacatctg cagccagaag tggctgaggt agtggtgctg ctggtgaaag
     2281 accatcgaga agttgtgcag cgtcgggtgc tcgggccaga gcttgcccga gaccgcctgc
     2341 tccttcggcg acagggcgaa cagcaccatg tgatagatcg gcagcagcgt ccagatcgcg
     2401 agcgggatgc cgatcagcag cagccgcgcc tcggccgagg ccttcttcag cgtcgatgcc
     2461 ttcatcgcga cagccgcttc atcatgaagt agacaagcgg cagcaccagc ggcatcgcgc
     2521 agaccaccgt cgcgagcgac atgtcgacct gatcgaggcg caggtagcgc aggccgagcg
     2581 tcgccagcac gtgggtctgg tcggcgggct ggccgccggt cagcaggtag acgctgttga
     2641 agtcgccgag cgtccagatc atcgacagga tgctcgaagt gagatagagc gtctgcagcg
     2701 acggccaggt gatgaacttg aacttctgcc agctcgtcgc gccgtcgacc gaggcggctt
     2761 cgtacatctc cgccggaatg gcgagccgcc cggcgatcag gatcagcgtc cagaacggca
     2821 acgacttcca gatgtggacg aggatcgaca acgccagcgc gatctgcggg ttgttgagcc
     2881 agttcggccc gtcggccccg gtgaggcgaa agatcgtcga gttgatgatc ccccactccg
     2941 ggttgagcat gaagcgcagc gacaggatgg tcgggatcga cggcaccgcc cagggcagga
     3001 tgaagagcag cgacagccac ttgatccacg gccacgtgcg gacgaagaat cccgacagga
     3061 agagcgccag cagcatcttc aggttgatgc cgacgatcag gaagatcagc gtgttgacga
     3121 ccgtgcgcgc gaacaccgga tcgtcgaaca gcttgacgta gctcgccgga tgacgcgcca
     3181 gccagaggcc gtagccgatc ggatagagga cgaagaccgc gaagatcagc acataaggcg
     3241 cgaccaggac catgccccac gcctgccacg gcgtgaggcg cttcctggtg gggccgaccg
     3301 gcgccgactg gcgcttcggc tgcccggcgc cgtcgagcgc gagcgtcgac acgtgcgggc
     3361 cgtcaggtca gccggcgagc gccttgatgc gggcgatcat ctcggtcacc gcctggtcga
     3421 ccgagacctt gtcgttgacg acgcggttca tcgccttggc ccacacgttc tcgttgttga
     3481 cgatcgtgaa cttgtagttc ttggtgaatt cgaagttcac cgtgccggcg ccgaactggt
     3541 tgaacaccga cctgcggtgc gggtcggcct gccagaacgg ccgttgcgtc gccgtcgtca
     3601 cgaccgggaa ccagcggccg agcgagcctt cgacgtaggg cgtcaggttc tcgtcctgga
     3661 gcaggaaggc gacgaactcc ttggcgcgcg ccttgttctt cgcggccgag aagacgacac
     3721 cggtcttgac ggcggcgcga tacaccatct tcgagccgtc cggcttgttc gggaagcccg
     3781 cggtgcggat cagctcgtcg tagttcttct tggcggtcgc gcgctgctcg gcgttgaggg
     3841 cttcgttgtt ggcgtcgtcg agccacttgg cggcgatcga gatcgtcgcg ttgtgcgtca
     3901 tcagcgtcgt cttattgaag aaggcgacgt tgttgtcggg atccttccag ctcgtcgacg
     3961 acggcggcgt gcagcccttg acggcgacgt cggtgtagtc cttgagggcg ctcaccagtc
     4021 cggccttgac cttgggatcg tcgaccagca gcttgccgtt gtcatcgacg agcttgacgt
     4081 tgtaggcgtc catgaaggtc aggaacgaat agaacgagtc gctcgagtcg acgcccatcg
     4141 gctggccgat ggcgaagacg cgcgagccgg tcttctggcg ataggccggc tgcaccttgt
     4201 cgcaccagaa cgaccagtag tcgctccact tggtcgggat gtcggcttcc ttgaagcccg
     4261 ccgcctgcag catgtcgagc cagatctcga cgtgcatcgt ctgctgcttg agcgggaacg
     4321 cgtagtaggc gcgcttcttc gccttatcgt cgtagagcca ggtcgtctcg agcgtgttct
     4381 tgaggaagcg cgccttcatc ggcgtgagga tgtcgctgat gtcctcgagc ttgccgtcga
     4441 aggcccactt gccggtgacc tggaagtcgt agacatcggc gtaggcgacg tccggcggcg
     4501 agccggcgtc gagcgcggcg accgtcttcg ggatcatgtc ctggatcggg tactgcgaga
     4561 gctcgacctt gacgccgctc ttggcctcga acttcttgat cgcctcgaac agggcgtcgt
     4621 cctcggactt gtagaagccc ttgacccacc agacggtgag cttttcctgc gccagcgcgt
     4681 ggccgccgaa ggcgagcgcg cagacggcga tgacgccggc aatcgtcttt ctcatggagt
     4741 ctccttgggt tctgtctcgg gcggcccggg gccgcccctg gaaaacataa ccgaagccga
     4801 accggttctc aatccgggat tggcgagggt tgtccggaca accgcgcgag acccgcggcg
     4861 cgcgcccttc cccggtgcgc tagctcggcc aggcgggctt gcgcttgtcg atgaacgcct
     4921 ggacgccctc gagggtatcg gcttccatca tgttgcaggc catggtccgt cccgcgtcct
     4981 cgtatgccgc ttcgatgccg ctttcgacct ggcgatagaa gagcgccttg cccagcgcga
     5041 tcgccgcgcg cggcttggcg acgatcgtcg cgaccagcga ctcgaccgcg ccggcgagcg
     5101 cctcggcggc ggcgacccgg ttgacgaggc ccctggcgcg cgcttcctcg gcggagatga
     5161 actcgccggt gacgagcatc tcgaaggccg gcttcctggc gaggttgcgc gcgagcgcga
     5221 cgctcggcga cgagcagaag aggccgaggt tgaccccgct cacggcgaag cgcgcaacgt
     5281 cggcggcgac ggcgaggtcg caggcggcga cgagctggca gccggccgcg gtggcgatcc
     5341 cctgcacgcg cgcgatcaca ggcaccggca ggcgctggat cgtcagcatc acgcgtgcgc
     5401 acttcgcgaa caggtcttcg tagtacgcga gcgacggcgc cgctcgcatc tccttcaggt
     5461 cgtggccggc gcagaacgcc ttgccttcgg cggcgatgac gacgacgcgg gcggtctcgt
     5521 cgatcgcgac ggcgtcgagc tcggcctgca gcgcggcgag catgccttcg ctgagggcgt
     5581 tgaacgactg cggccggtcg agggtgaggg tgacgacgcc gcgcttgtcg acgccgcgcc
     5641 ggacgaaggg agtgagctcg gtcgcgaccc ggtcgttcat ggcagacccc cgtacatcgt
     5701 ctattcgaac gccgccgccg agcgggcacg ctggcgcagc tggaacttct ggatcttgcc
     5761 ggtcgacgtc ttcgggatcg gctcgaagcg gatctcgcgc ggcaccttgt agccggcgag
     5821 gagcgacttg cagtgagcca cgagccccgg cgcgtcgacc gtcgcaccgg cacgcagctc
     5881 gacgaaggcg agcggcgcct cgccccattt cgcgtccggc cgcgcgacga cggcgcaggc
     5941 catgacgtcg gcgtggcgat agagcgcgtc ctcgacctcg agcgaact
//
LOCUS       DASVHM010000343         7446 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1251538, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000343 DASVHM010000000
VERSION     DASVHM010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7446
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1251538"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..408)
                     /locus_tag="VF308_06490"
     CDS             complement(<1..408)
                     /locus_tag="VF308_06490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase"
                     /protein_id="HEX7436333.1"
                     /translation="MQVTDIRDPDYFHKVVDCQWACPAHTPVPEYIRLIAAGRYTDAY
                     MVNWESNVFPGILGRTCDRPCEPACRRGRVEEAQAAKPEPVAICRLKRVAADFKDDIT
                     GLLPRLVAAKNGKRIACVGAGPAALTVARDLAPL"
     gene            780..1067
                     /locus_tag="VF308_06495"
     CDS             780..1067
                     /locus_tag="VF308_06495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436334.1"
                     /translation="MTLFGIVLRKPSFNEITAATIMAVGLWLACLGGAAAIGQPMSRL
                     DAGAALLVLLWGCLSVRFGVHVGQGRAHLVANLCVTAVLLLLYQGACLAMG"
     gene            complement(1095..2297)
                     /locus_tag="VF308_06500"
     CDS             complement(1095..2297)
                     /locus_tag="VF308_06500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEX7436335.1"
                     /translation="MTTKASIDAIISQTDNVPASAVGEQPRVLLQMPVDIRSASLALL
                     AALATLYTLSWAKAVFIPILLGLMASYALTPVVDRLERWRLPRVLAAALLLAAIVGSI
                     GWTAFSLRDEATALVESLPEVAQKFRQTLQARQGPQPRPVGAMDKVQQAASELEKASE
                     TGAASAASAAANARGVTRVQIEKARFNIQDYFWTGTLGLVAFLGQASVVLFLTFFLLA
                     SGKTFRRKMVRIAGPTFSEKKLTIQALDEITEQIQRYLLVQVFTSLLVALATWLCFLW
                     IGVQHAAVWGLFAGVLNLIPYVGSIIFTASAAASALLQFGTIESVLLIAVVSLAIHSV
                     SGYVLTPWLTSRASRMNAVTVFIGVLAWGWLWGLWGLLLGVPILLVVKAVCDRVEDLK
                     PIGELLGS"
     gene            complement(2320..3594)
                     /locus_tag="VF308_06505"
     CDS             complement(2320..3594)
                     /locus_tag="VF308_06505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013900692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX7436336.1"
                     /translation="MQRRDVLKAASAGMLGLAGCATNGRGDPGSARVLVVGGGYAGAT
                     AAKYLRLFSAYRLDVVLVEPDAAFVSCPLSNLVLGGNRTMADITMPYTGLARAHGVRV
                     VHDSVARIDAVGRVAELASGARIRYDKLVLAPGVEMIWDGVAGLREASAAGRIVQAWK
                     AGPETALLRRQLEAMPDGGTFAIAIPESPYRCPPAPYERACLVANYFKTAKPRSKVLV
                     LDANEDVTSKSPLFKKAWAESYAGIVEYRPQYKATAVDAAAGIVKFEVQDDERADVLN
                     VLPPMRAGRVAVQTGLANANARWCTVDFLTFESTAARHIHVLGDSIQIAPAMPKSGHM
                     ANSQAKVAAAAIVAELSGWEVDPAPMLTNTCYSFVDDRRAVHVTSVHEYVSAERTFKT
                     VPGSGGLSGAASELEGRYAWNWARTIWADVLS"
     gene            complement(3609..3929)
                     /locus_tag="VF308_06510"
     CDS             complement(3609..3929)
                     /locus_tag="VF308_06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013900693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEX7436337.1"
                     /translation="MTPIGRVWLCAFACLAPLGAARAQDAAALRLRSLVATCAQCHGT
                     DGRPAPDSIVPALAGLPEATLIERMTAFKDGTRPATVMTQLARGFSEAQIRQLATAFA
                     APAR"
     gene            complement(3946..4776)
                     /locus_tag="VF308_06515"
     CDS             complement(3946..4776)
                     /locus_tag="VF308_06515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436338.1"
                     /translation="MADANELQYAAPNPERDAADRLSRLHGALELKAALLALLLPAGS
                     RRAARAFEIETADARQAPGVHQHVLNLAPAARLPWFELLLTRMALQPLALRQELLQAT
                     RRIIGARGGTRPIDLLHWFAMRRGLGERPGATVRGSGSGDVSEWLETDLFAIASYSAY
                     LSRMVPVERAKHADGQAGTDWYIAVMEPWEGGFAMPACETPDGEGVVRALATLQTLSM
                     MQRPVLARGWVSAALKHDHRGRLTDSAADALRLSCSLLDTPMPPELELHYGRVEGLPK
                     "
     gene            complement(4818..5345)
                     /locus_tag="VF308_06520"
     CDS             complement(4818..5345)
                     /locus_tag="VF308_06520"
                     /inference="COORDINATES: protein motif:HMM:NF015944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HEX7436339.1"
                     /translation="MSRLQIGAWIAAAVLLFWAVGAYNRLVGLRNAIVRSFGPIDEQF
                     SARHALLEQQLDAVGALLANAAQRLDALRAACLQADAARAHAKAHPGAPGAVTSLRLA
                     DDILTEARARLPVQTVGGLDMSELNARLAATDAALAFARGQFNAAVLDYNRAVRQIPT
                     RLLAALFGFAPAGTL"
     gene            complement(5447..6148)
                     /gene="queC"
                     /locus_tag="VF308_06525"
                     /pseudo
     CDS             complement(5447..6148)
                     /gene="queC"
                     /locus_tag="VF308_06525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561541.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
     gene            complement(6239..>7446)
                     /locus_tag="VF308_06530"
     CDS             complement(6239..>7446)
                     /locus_tag="VF308_06530"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEX7436340.1"
                     /translation="AASTAAKNAALRALALRLRESGPMLQAANAQDLAGAAGAGLAAP
                     LLDRLKLTPQIIETAAAGCDEIAAMPDPIGEITELRQRPSGIAVGRMRVPLGVFGMIY
                     ESRPNVTIEAAALAIKSGNACILRGGSEAIHSNLALWKLVQAALQEAGLPPDAVQLVQ
                     TTDRAAVGFLIASPESVDVVIPRGGKGLIERISREAKVPVIKHLEGNCHVYVDAGADL
                     ELAVRVTDNAKTQKYSPCNAAESLLVHAAIAADFLPQIGAAFAAKGVEMRCDAPSRAL
                     LRTVPNAKLADATEADWAEEYLAPVISIKVVPDLDAAIAHINRHGSHHTDAILTANHA
                     HAMRFLREVDSASVMVNASTRFADGYEYGLGAEIGISTDKLHARGPVGLEGLTSLKWV
                     VLGNGEVRS"
BASE COUNT         1095 a         2575 c         2616 g         1160 t
ORIGIN      
        1 gagcggcgcg aggtcgcgcg cgaccgtcaa tgcggccggg cccgcgccga cgcaggcgat
       61 gcgcttgccg ttcttcgccg cgaccagacg cggcaggagt ccggtgatgt cgtccttgaa
      121 atcggcggcc acgcgcttca ggcggcagat cgcgaccggc tcgggcttgg cggcctgcgc
      181 ttcctcgacc cggccgcgcc ggcacgccgg ctcgcagggc cggtcgcagg tgcgaccgag
      241 aatgcccggg aacacgttcg attcccagtt caccatgtag gcgtcggtgt agcgaccggc
      301 cgcgatcagg cggatgtatt cggggacggg ggtgtgggcc gggcaagccc actggcagtc
      361 gaccaccttg tggaagtagt cgggatcgcg aatgtcggtg acttgcaacg attcctttcc
      421 tgcgcgcacc tgggggctgc ccacgcgccg cgtgaccgca actgaacccg gcgatgctaa
      481 gccctctgct ggtgcgctgc catcaggggt ttgtgcaacg ttgcgcactc acaccgtgca
      541 tgtgggtggc attgcacgct agcgggcgcg cactgcagtg cctcgtcgca atgcccgccg
      601 gcgcgcacca cgatactgcg cggggggccg acgcgccttc ggcctgaacc gggttcgacc
      661 tggcgtgtga attgcacgcc gtttcccggc ttcatccgga cttggcgcgc gcgggccgtg
      721 cctatccttg cgacagttcc ggcgcccttc ttttcacgtt ccgccaatct ggtttcacca
      781 tgacgctctt cggcatcgtg ctgcgcaagc cctcgttcaa cgaaatcacc gcagccacca
      841 tcatggccgt cggcctctgg ctcgcctgcc tcggcggcgc tgccgcgatc ggccagccga
      901 tgagccggct cgatgccggc gccgcgctgc tggtcctgct ctgggggtgc ctgagcgtgc
      961 gcttcggcgt gcacgtcggc cagggacgcg cgcacctcgt cgccaacctc tgcgtcaccg
     1021 cggtgctgct gctgctctac cagggcgcgt gcctggccat gggttgagcc ccgtcgccgg
     1081 ggcgttcaac cgcctcagct gccgagcaac tcgccgattg gcttgaggtc ttcgacgcgg
     1141 tcgcacaccg ccttgacgac cagcaggatc ggcacgccga ggagcagacc ccacagcccc
     1201 cagagccagc cccaggcgag cacgccgatg aacacggtga ccgcgttcat gcggctggcg
     1261 cggctcgtca gccagggcgt cagcacgtag cccgacacac tgtgaatggc aagcgagacg
     1321 accgcgatca gcagcaccga ttcaatcgtg ccgaattgaa gcagcgcgct cgccgccgcg
     1381 ctcgccgtga agatgatgga gccgacgtaa gggatgaggt tgagcacgcc cgcgaagagc
     1441 ccccagaccg ccgcatgctg cacgccgatc cagagaaagc agagccatgt cgccagcgcg
     1501 accaggaggc tcgtgaacac ctggaccagc agatagcgct ggatctgttc ggtgatttcg
     1561 tcgagggcct gaatcgtgag cttcttctcc gaaaaagtcg gcccggcgat cctcaccatc
     1621 ttgcgccgga aggtcttgcc cgaggcgagc aggaagaagg tcaggaacag caccacgctc
     1681 gcttggccga ggaatgcgac gaggccgagc gtcccggtcc agaagtagtc ctggatgttg
     1741 aatctcgcct tctcgatctg caccctcgtc acgccgcgcg cattcgccgc cgcgcttgcg
     1801 gcgcttgccg cgccggtctc ggaggccttc tcgagttccg acgcggcctg ctgcaccttg
     1861 tccatcgcac cgacgggccg aggctgcggc ccctggcgcg cttgcagcgt ctgtcggaac
     1921 ttctgtgcca cctcgggcag cgattcgacc agcgccgtgg cctcgtcgcg gagcgaaaaa
     1981 gcggtccagc cgatcgagcc gacgatggcc gccagcagca gcgccgccgc cagcaccctc
     2041 ggtaggcgcc agcgttcgag ccgatccacc accggcgtca gcgcgtagct cgccatcagg
     2101 ccgagcagga tcggaatgaa gaccgccttg gcccagctca aggtgtagag ggtcgcaagc
     2161 gcggcgagca gcgcgagcga agcgctgcgg atgtcgaccg gcatttgcag cagcacgcgc
     2221 ggctgctctc cgacggccga cgcgggcaca ttgtcggtct gcgagatgat ggcgtcgatc
     2281 gaggctttgg tggtcatgga tgcgctgggt tggccggcct caggagagta catcggccca
     2341 gatcgtgcgc gcccagttcc aggcgtagcg gccttcgagt tcgctcgccg cgccggaaag
     2401 cccgccggag ccgggcacgg tcttgaaggt ccgctcggcg ctcacgtatt cgtgcacgct
     2461 cgtgacatgg accgcgcgcc ggtcatcgac gaagctgtag caggtgttgg tcagcatcgg
     2521 cgccgggtcc acctcccagc cgctcagttc ggcgacgatc gctgccgccg cgaccttggc
     2581 ctggctgttg gccatgtggc cgctcttggg catcgccggc gcgatctgga tcgaatcgcc
     2641 gagcacgtgg atgtggcgcg ccgcggtcga ctcgaaggtg aggaagtcga cagtgcacca
     2701 gcgcgcattc gcgttcgcca ggccggtttg caccgcgacc ctcccggcgc gcatcggcgg
     2761 cagcacgttg agcacgtcgg cgcgctcgtc gtcctgcacc tcgaacttga cgatgccggc
     2821 ggcggcgtcg acggcggtcg ccttgtattg cggccggtac tcgacgatgc cggcgtagct
     2881 ctcggcccag gccttcttga agagcgggct tttcgacgtg acgtcctcgt tcgcatcgag
     2941 cacgagcacc ttcgacctcg gcttggccgt cttgaaatag ttcgcgacca ggcaagcgcg
     3001 ctcgtagggg gcgggcggac agcggtaggg ggactccgga atcgcgatcg cgaacgtgcc
     3061 gccatcgggc atcgcctcga gctggcgccg cagcagcgcg gtttcggggc ccgctttcca
     3121 ggcctgcacg atgcgccccg cggcgctcgc ttcgcgcagg ccggcgacgc cgtcccagat
     3181 catttcgacg ccgggcgcga gcacgagctt gtcgtagcga atgcgcgcgc ccgatgcgag
     3241 ctcggcgacg cgccccacgg cgtcgatgcg cgcgacgctg tcgtgcacga cccgcacacc
     3301 gtgcgcccgc gcgagcccgg tgtagggcat ggtgatgtcg gccatcgtcc ggttgccgcc
     3361 gagcacgagg ttcgagagcg ggcacgacac gaaggccgcg tcgggctcga cgagcacgac
     3421 gtcgagccgg taggcggaga agaggcgcag gtacttggcc gcggtcgccc cggcgtagcc
     3481 gccgcccacg accagcacgc gcgccgatcc ggggtcgccg cgtccgtttg tcgcacagcc
     3541 ggccaggccg agcatgccag ccgaggccgc cttcagcacg tcccgccgct gcatgccgcg
     3601 cccgtgcctc accgcgctgg cgcggcgaag gccgtcgcca gttgccggat ctgcgcctcg
     3661 ctgaagcccc tggcgagttg cgtcatcacg gtcgccgggc gcgtgccgtc cttgaacgcc
     3721 gtcatccgtt cgatcagggt ggcctccggc aggccggcga gcgcgggcac gatcgaatcc
     3781 ggggccgggc ggccgtcggt gccgtggcac tgggcgcagg tcgcgacgag gctgcgcagt
     3841 cgcaatgccg ccgcgtcctg cgcccgggcc gcgccgagcg gggccaggca ggcgaaggcg
     3901 cagagccaca cgcgcccgat cggcgtcatc gcgggcatcg atcgatcact tgggcaagcc
     3961 ctcgacgcga ccatagtgaa gttcgagctc cggcggcatc ggggtgtcga gcaggctgca
     4021 actgagccgc agtgcatcgg ccgccgagtc ggtcaacctg ccccgatggt catgcttgag
     4081 cgcagcgctc acccagccgc gagccagcac cgggcgctgc atcatcgaga gggtctgcaa
     4141 ggtggccagc gcccgtacca cgccctcgcc gtccggcgtt tcgcaggccg gcatcgcgaa
     4201 gccgccttcc cacggctcca tcaccgcaat gtaccagtcg gtacccgcct ggccgtcggc
     4261 gtgcttggcg cgctcgaccg gcaccatgcg cgacaggtac gcgctgtagc tcgcgatcgc
     4321 gaacagatcg gtttcgagcc actccgacac gtcgcccgag cccgagccgc gcacggtcgc
     4381 gcccgggcgt tcgcccaggc cgcggcgcat cgcgaaccaa tgcaggaggt cgatcggacg
     4441 cgtgccgccg cgcgcgccga tgatgcgccg cgtcgcctgc aacagctcct ggcgcaacgc
     4501 cagcggctgc agcgccatgc gcgtcaacag cagctcgaac cacggcaggc gcgcggcagg
     4561 ggcgaggttg agcacgtgct ggtggacccc cggcgcctgg cgcgcatcgg cggtctcgat
     4621 ctcgaacgcg cgcgcggccc tgcggctgcc tgccggaagc agcagggcga gcagcgcggc
     4681 cttcaattcg agcgcgccgt gcaggcgcga caggcggtcg gccgcgtcgc gttccggatt
     4741 cggtgccgcg tattgaagct cgttcgcgtc agccatgtgg gtgcgtcctg gccggggggt
     4801 gtcgattgac caggccccta cagcgtgccg gccggcgcga agccgaacag cgcggcgagc
     4861 agccgggtcg gaatctgccg cacggcgcgg ttgtagtcca gcaccgcggc attgaactgg
     4921 ccgcgcgcga aggcgagcgc cgcgtcggtc gcggcgagcc gggcgttcag ctcggacatg
     4981 tcgaggccgc cgaccgtctg caccggcagc cgcgcgcgtg cctcggtgag gatgtcgtcg
     5041 gccaggcgca agctggtcac ggcgccgggc gcaccggggt gcgccttcgc atgcgcgcgc
     5101 gccgcatcgg cctgcaggca ggcggcgcgc agcgcgtcga gacgctgcgc cgcgttcgcc
     5161 agcagcgcgc ccacggcgtc gagttgctgc tcgagcaggg catggcgcgc gctgaactgc
     5221 tcgtcgatgg gcccgaagct cctgacgatc gcgttgcgca gtccgaccag gcggttgtag
     5281 gcgccgacgg cccagaacag cagcaccgcg gccgcgatcc aggcgccgat ctgaagtctg
     5341 ctcatgggcg cgactgtaag acagagcgac gcttccacgc agccctagca tttgctggcc
     5401 gtgccgaacc ggggctcgcg ccgtggctcg acccttcagg aacccttcag ctggcgagcc
     5461 agtcctcgta gcccttgcgg cgcaggtcgc atgaggggca gaggccgcag ccgtagcccc
     5521 aggcatggcg ttgcgtgcgg tcgcccatgt agcacgagtg ggtgtgctcg accacgagtt
     5581 cgagcagcgc ttcgccgccg agcttttcgg tcagggccca ggtctcggcc ttgtcgaacc
     5641 acatgagcgg cgtgtcgatc gtcatcgggg cgtcgagccc gaggctcagc gccacctgca
     5701 gtgccttcag ggcgttgtcg cgcgaatcgg ggtaacccta gaaatcggtc tcgcacatgc
     5761 cgccgaccag cacgctgagg ccgcgccgat cggcgatggt cgcggcaaag gtgaagaaga
     5821 gcaggttgcg cgccgggacg aactcgttcg gcaggccgcc gctcttcatc gcgctcgcgc
     5881 gggcctcggt cggtgcgatc tgggcgagct gaccgagcag cgacagatcg aggatgtggt
     5941 catcgccgag cttgtgcttc cactgcggga atttcgtgtg cagttcggag cgcacatgga
     6001 gccggcattc gagctcggct tcatggcgca gcgcatggtc gaagccgatc gtctcgacgt
     6061 gggcgtagcg gttcagggcc caggccaagc agacggtgga atcctgccct cccgaaaaca
     6121 ggacgagggc gcggcgcggg tcggtcatcg cgccatcatg cccgcagttc gcgtggcgct
     6181 gtcatcagga aaccccgcct gcgtggcttc ggtcacggcg cggtcgcgcg tggggaagtc
     6241 agctgcgcac ttcgccgttg ccgagcacga cccacttcag cgacgtcagg ccttcgagcc
     6301 cgaccgggcc gcgcgcatgc agcttgtcgg tggagatgcc gatctcggcg ccgaggccgt
     6361 attcgtagcc gtcggcgaag cgcgtgctag cgttgaccat cacgctcgcc gaatcgacct
     6421 cgcgcaggaa gcgcatcgcg tgcgcatggt tcgcggtgag gatcgcgtcg gtgtggtgcg
     6481 agccgtggcg gttgatgtgc gcgatcgcgg cgtcgagatc gggcacgacc ttgatgctga
     6541 tgaccggcgc caggtattcc tcggcccagt cggcctcggt cgcgtcggcg agcttcgcgt
     6601 tcggcaccgt gcgcagcagc gcgcggctcg gcgcatcgca gcgcatctcg acgcccttgg
     6661 cggcgaacgc ggcgccgatc tgcggcagga agtccgcggc gatcgccgcg tgcacgagca
     6721 gcgactcggc cgcattgcag gggctgtatt tctgcgtctt cgcgttgtcg gtcacgcgca
     6781 cggccaactc gaggtcggcg cccgcatcga cgtagacatg acaattgcct tcgaggtgct
     6841 tgatcaccgg gaccttcgct tcgcggctga tgcgctcgat caaccccttg ccgccgcgcg
     6901 ggatgacgac gtcgaccgac tcgggcgacg cgatcaggaa gccgaccgcg gcccggtcgg
     6961 tggtctgcac gagctgcacc gcatcgggcg gcaggcccgc ctcctgcaag gcggcctgca
     7021 ccagcttcca gagcgcgagg ttcgaatgga tcgcctcgga gccgccgcgc aggatgcagg
     7081 cattgccgct cttgatcgca agcgccgccg cctcgatcgt cacgttgggc cggctctcgt
     7141 agatcatgcc gaagacgccg agcggcaccc gcatgcggcc cacggcgatg ccgctcgggc
     7201 gctggcgcaa ctcggtgatt tcgccgatcg gatccggcat cgcggcgatc tcgtcgcagc
     7261 ccgcggcggc ggtctcgatg atctgcggcg tgagcttgag gcggtcgagc agcggcgcgg
     7321 cgaggccggc gcccgcggcg cccgcgaggt cctgtgcatt cgccgcctgc agcatcgggc
     7381 cgctctcgcg cagccggagc gccagcgcgc gcagcgccgc attctttgcc gctgtcgatg
     7441 cggcca
//
LOCUS       DASVHM010000344         1556 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_964409, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000344 DASVHM010000000
VERSION     DASVHM010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_964409"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1556)
                     /locus_tag="VF308_06535"
     CDS             complement(<1..>1556)
                     /locus_tag="VF308_06535"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEX7436341.1"
                     /translation="FNPAAGRIFGVVPAQILGRCAEDVLPPRGAAAIRAIDERVMSED
                     RTITVEDVLPTANGERTFLITRGPLHDESGAVVGLSGISRDITERIELERRLREREAA
                     LHRSQVIAGLGHAVIGPGGRIEDVSQALPALLGRSRTDMPADIRAFLEWVHPEERESV
                     REKILGLGPDVLRADFEYRLQRGDGSWMEIRQDIVPLDEGDGAARTRWFSTLLDVTEH
                     KNAERALRGATARLQAVKDSTLNQMAVLDAAGIINDVNNAWRSFGRANGRGTGGLGER
                     DDVGTDYLAVCRQAAGSDPDARLALDGIAEVLRGERDAFAMEYACHSPTQQRWFAMSV
                     TPLRFQRGGAVIVHTDISKRKRDEVELTQHRDHLEELVAERSADLRQANLALSDAEAF
                     LRMLADNIPARVAYWHRDLTCGFVNRVYCDHYGVTREDLIGRRMEDFFGSEAAAERMP
                     RVNDVLAGEAQHFEVEEKRKADGGWAHTWVHYIPDRHGDEVHGFFVLATDVSEAKKAE
                     QRLQQANAALV"
BASE COUNT          202 a          543 c          553 g          258 t
ORIGIN      
        1 accagcgccg cgttggcctg ctgcaggcgc tgctcggctt tcttggcctc gctgacgtcg
       61 gtggcgagaa cgaagaagcc gtgcacttcg tcgccgtgcc gatcggggat gtagtggacc
      121 caggtatggg cccagccgcc atcggccttt cttttctcct cgacctcgaa gtgctgtgcc
      181 tctccggcca gcacgtcgtt gacgcggggc atccgctcgg ctgcggcctc gctgccgaag
      241 aagtcctcca tcctgcggcc gatcagatcc tcgcgagtca cgccgtagtg gtcgcagtag
      301 acgcggttga cgaagccgca ggtgaggtcg cgatgccagt atgcgacccg ggcggggatg
      361 ttgtcggcca gcatgcgcag gaacgcctcg gcgtcggaca gcgccaggtt ggcctgccgc
      421 aggtcggcgg agcgctcggc gaccagttcc tcgagatggt cccggtgctg ggtgagctcc
      481 acctcgtcgc gcttgcgctt gctgatgtcg gtgtggacga tgacggcgcc gcccctctgg
      541 aagcgcagcg gcgtgacgct catcgcgaac cagcgctgct gggtcgggct gtggcaggcg
      601 tactccatcg cgaacgcgtc gcgctcgccg cgcagcactt ccgcgatgcc gtcgagcgcc
      661 agccgggcgt ccggatcgct gccggcggcc tgccggcaga ccgccaggta atcggtgccg
      721 acgtcgtcgc gttcgccgag gccgcccgtg ccgcggccgt tggcgcggcc gaagctgcgc
      781 caggcgttgt tgacgtcgtt gatgattccc gccgcgtcga ggaccgccat ctggttgagg
      841 gtcgaatcct tcaccgcctg cagccgggcg gtcgccccgc gcagcgcgcg ctcggcgttc
      901 ttgtgctcgg tcacgtcgag cagggtcgag aaccagcgcg ttctggccgc gccatcgccc
      961 tcgtcgagcg gcacgatgtc ctgccggatc tccatccagc tgccgtcgcc gcgctgcagg
     1021 cggtattcga agtcggcgcg aagcacgtcc gggccgagcc cgaggatctt ctcgcgcacc
     1081 gactcgcgct cctcgggatg gacccactcg agaaaggcgc ggatgtcggc cggcatgtcg
     1141 gtccggctgc ggccgagcag cgccggcagc gcttgcgaca cgtcctcgat cctcccgccc
     1201 ggcccgatga cggcgtggcc gaggccggcg atgacctggg agcgatgcag cgcggcctcg
     1261 cgctcgcgca ggcgccgctc gagctcgatc cgctcggtga tgtcgcgcga aatgccggac
     1321 aggccgacga ccgcgccgga ctcgtcgtgc agcggaccgc gggtgatgag gaacgtgcgt
     1381 tcgccgttcg ccgtcggcag gacatcctcg acggtgatcg tccggtcttc cgacatgacg
     1441 cgctcgtcga tcgcgcggat cgccgcagcg ccgcgtggcg gcagcacgtc ctctgcgcat
     1501 cggcccagga tctgcgcggg caccacgccg aagatccggc cggccgctgg gttgaa
//
LOCUS       DASVHM010000345         1763 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1251801, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000345 DASVHM010000000
VERSION     DASVHM010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1251801"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1693)
                     /locus_tag="VF308_06540"
     CDS             complement(<1..1693)
                     /locus_tag="VF308_06540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEX7436342.1"
                     /translation="MRGLNPEQLAAVTLPARPALILAGAGSGKTRVLTTRIAWLIQTG
                     QLSPGGVMAVTFTNKAAKEMLTRLAAMLPLPVRGMWVGTFHGLCNRFLRAHWKLAALP
                     QGFQILDASDQLSAVKRIIKALNLDEERYVPKQVTWTIAAAKEEGLRPKDMEVRDEQS
                     RVVVQVYEAYEAQCQREGVVDFAELMLRTYELMRDNAALREHYRRRFRHILVDEFQDT
                     NKLQYAWLKMFAGPDAAVFAVGDDDQSIYAFRGAQVGNMAAFEREFGVQQVVKLERNY
                     RSYGNILDAANELIAHNSRRLGKNLRTEAGPGEPVRVREATSDYGEAQWFVEEAQQLH
                     REGTPRSDIALLYRSNAQSRVLESALFNAGVPYKVYGGLRFFERAEVKHALSYLRLIE
                     NPNDDTSFLRVVNFPARGIGARTLEQVQDSARQSGRSLYQSVGSVTGKGGANLQAFVA
                     KVDAMREATRGLTLRRIIEHMLDASGLVEFYKTDKEGKDRLENLEELVNAAEAFVTQE
                     GFGKDAVALPVDETATREAGRAEYNTPGAEVVAASLAAAVTPDPESGEIMSPLAAF"
BASE COUNT          242 a          597 c          618 g          306 t
ORIGIN      
        1 ggaacgcggc gagcggcgac atgatttcgc ccgattcggg gtcgggcgtg acagccgccg
       61 cgaggctcgc ggcgacgacc tcggcacccg gcgtgttgta ctcggcgcgg ccggcctccc
      121 gcgtcgccgt ctcgtcgacc ggcagcgcga cggcatcctt gccgaagccc tcctgggtta
      181 cgaaggcctc ggccgcgttg accagttcct cgaggttttc gagccggtcc ttgccttcct
      241 tgtcggtctt gtagaactcg accaggcccg aagcgtcgag catgtgctcg atgatccggc
      301 gcagcgtgag cccgcgcgtc gcctcgcgca tcgcatcgac tttggcgacg aaggcctgca
      361 ggttcgcgcc gcccttgccg gtgaccgagc cgacgctctg gtagaggctg cgcccgctct
      421 ggcgcgcgct gtcctggacc tgctcgaggg tgcgcgcgcc gatgccgcgc gccggaaagt
      481 tgacgacgcg cagaaagctc gtgtcgtcgt tcgggttctc gatcaggcgc aggtagctga
      541 gcgcgtgctt gacttcagcg cgctcgaaga agcgcaggcc gccatagacc ttgtacggca
      601 cgccggcgtt gaagagcgcg ctttcgagga cccggctctg cgcgttgctg cgatagagca
      661 gcgcgatgtc gctcctcggc gtgccctcgc ggtgcagctg ctgcgcctcc tcgacgaacc
      721 actgggcctc gccgtagtcg ctggtcgctt cgcgcacccg caccggctcg cccggcccgg
      781 cctcggtgcg caggttcttg ccgaggcggc gcgagttgtg ggcgatgagt tcgttggcgg
      841 cgtcgaggat gttgccgtac gagcggtagt tgcgttcgag cttgacgacc tgctggaccc
      901 cgaactcacg ctcgaaggcc gccatgttgc cgacctgggc accgcgaaac gcgtagatgc
      961 tctggtcgtc gtcgccgacc gcgaagaccg cggcatcggg cccggcgaac atcttcagcc
     1021 aggcgtactg aagcttgttg gtgtcctgaa actcgtcgac caggatgtgc cggaagcggc
     1081 gccggtagtg ctcgcgcaat gccgcgttgt cgcgcatcag ctcgtaggtg cgcagcatga
     1141 gctcggcgaa gtcgaccacg ccttcgcgct ggcactgcgc ctcgtaggct tcgtagacct
     1201 ggacgacgac gcggctctgc tcgtcgcgca cctccatgtc cttcgggcgc aggccctctt
     1261 ccttcgcggc ggcaatggtc cacgtcacct gcttcgggac gtagcgctcc tcgtcgagat
     1321 tgagcgcctt gatgatgcgc ttgacggccg agagctggtc gctcgcgtcg aggatctgga
     1381 agccctgcgg caacgccgcc agcttccagt gggcacgcag gaagcggttg cacaggccgt
     1441 ggaaggtgcc gacccacatg ccgcgcaccg ggagcggcag catcgcggcg agccgcgtca
     1501 gcatctcctt cgcggccttg ttcgtgaagg tcaccgccat caccccgccc ggagagagct
     1561 ggccggtctg gatcagccag gcgatgcgcg tcgtcagaac gcgggtcttg cccgagccgg
     1621 cgccggcaag gatgagcgcc ggccgggccg gcagcgtcac ggcggcgagc tgctccgggt
     1681 tgagtccgcg caagaggccc tgcggttcga ccgggacggc gggcgccgac tcttcgtcgc
     1741 cggggaggta cgcggcgccg ctc
//
LOCUS       DASVHM010000346         4273 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_242170, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000346 DASVHM010000000
VERSION     DASVHM010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4273
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242170"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..638)
                     /locus_tag="VF308_06545"
     CDS             complement(<1..638)
                     /locus_tag="VF308_06545"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436343.1"
                     /translation="MPAHPPLIEIDHVGMVYATESGPVEALRDISLAVEDGEFVALVG
                     PSGCGKSTLMRIIAGLRPVTAGHVVVDGAAVTGPVSRVGMVFQAAVLLKWRTVLDNVL
                     LPAELSGQRPAMYRERALQLLELVGLADFANKQPHELSGGMQQRASLCRALLLDPPIL
                     LMDEPFGALDAMTRDEMNLELLRIWGEGRLDAAVRGRAVGRRKTIVFVTHSIP"
     gene            complement(658..1671)
                     /locus_tag="VF308_06550"
     CDS             complement(658..1671)
                     /locus_tag="VF308_06550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436344.1"
                     /translation="MSSKSKLGSLFGAAVLALSASAASAQAPEKFTFALNWFAVGDHA
                     AYWVALDKGYFAKAGLDVTLENSKGSGDSIAKVDTDRADAGLADTVAVLAADARGARV
                     KMVGMVFDKTPLNFFSRKDSPVTKPKDLEGKTVGAPPGDGQRQAWPAFAKLHNIDQNK
                     VTWVNIEPAAKMAALAEKRVDVIGDYSTGLPFYDKALGAGNAVMMPWADTGFDLYSIS
                     IMASEKTMKERPKVLRAFLEAAYMGWRDVMADPKGALAIFKKRVPEIDLSIIEPNMML
                     GLDLMRTKNYADKGIGWIDDKKMCGSVDIVNTYMGLAKKVDCKDVYTTEFLTKVAMPL
                     TVK"
     gene            complement(1721..2485)
                     /locus_tag="VF308_06555"
     CDS             complement(1721..2485)
                     /locus_tag="VF308_06555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436345.1"
                     /translation="MAKAVRWLVNYLPALAIFAAFIVLWQLAVSFLGLREYLLPSPAS
                     VLRAMFGDEIPWARHIWVTALEIVGAFVLAGVAGVVLGMAIAWSAAMSRALTPFLVFV
                     NTLPKVAIAPLFLMWMGYGIVPNILIGALIGFFPVVINTAVGLTQIDQDLVDLGRVFN
                     APKWKVFLKIRVPNAYPYILSALKVTATAAVVGAIVGEFVASQRGLGYVIITTQSSMN
                     TPVAFAALVWISVLGLLLFGFVAALSRILVPWAGEV"
     gene            complement(2478..3611)
                     /locus_tag="VF308_06560"
     CDS             complement(2478..3611)
                     /locus_tag="VF308_06560"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HEX7436346.1"
                     /translation="MKIATVEVFVLGFAFKSVFVLAGGVAGDVNTLSHRVLVKLTTES
                     GATGWGEATPTPRWTYETTETIVSTLRHYLVPAVIGIPVWNLDALHRAMERAINPGVT
                     PGSPLAKSALDVAAHDAWGRALGVPVHQLLGACRREVFDLSWMVSVQQPADAERLVAE
                     GLEAGYTMFDAKIGMHGEAGDLDLVRRARRAAGARFLQVDANRGYRVDAALRQARRFA
                     DLEIALFEQPLNGFNLSGYRRLQAASPIPIGIDESLRSVPDLLEYVRADAIGVVVAKV
                     QRNAGLCRSRQLCEAAEAAGLELSLSGLTETDLGLAAGLHLAAAFDINPLQLNGPQYI
                     DTPFLRERVWHGGGQVRLPKDPGLGVEVDEGYVRRNALGVAHG"
     gene            complement(3625..>4273)
                     /locus_tag="VF308_06565"
     CDS             complement(3625..>4273)
                     /locus_tag="VF308_06565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEX7436347.1"
                     /translation="EAIPLIGFYLQPAVGGVELSACFWARFALIENVVAIKVAPFNRY
                     RTLDVMRGVALADAEDRVVLYTGNDDHIVLDLVTPFAATRDGKPVTLRFRGGLLGHWS
                     VWTRSAVALLERCKAAVAAQEKGGAIDADLLALDSRVTDCNSAFFDVANDFHGCIAGC
                     HEVLRRQGLLEGIWCLDPHEGLGPGQAAEIDRVLTQHADLSDDAFVAANLDRWLA"
BASE COUNT          715 a         1455 c         1459 g          644 t
ORIGIN      
        1 gggatcgaat gggtgacgaa gacgatggtc ttgcgccgcc cgaccgcgcg gccgcggacc
       61 gccgcgtcga gccggccttc gccccagatg cgaagcagtt ccagattcat ctcgtcgcgc
      121 gtcatcgcgt cgagcgcgcc gaacggttcg tccatcagca ggatcggggg gtcgagcagc
      181 aacgcccgac acagcgacgc gcgctgctgc atgccgccgg acagctcgtg cggctgcttg
      241 ttcgcgaagt cggccaggcc gacgagctcg agcaattgca gggcacgctc gcggtacatc
      301 gccggccgct gccccgacag ctcggccggc agcaacacgt tgtcgagcac cgtgcgccat
      361 ttcagcagca ccgccgcctg gaacaccata ccgacgcgcg agaccggccc ggtgacggcg
      421 gcgccatcga cgacgacgtg gcccgcggtc acgggcctca acccggcgat gatgcgcatc
      481 agcgtcgact tgccgcagcc gctcgggccc accagcgcga cgaactcgcc gtcttcgacc
      541 gcgagcgaaa tgtcacgcag ggcctcgacc ggcccgctct cggtcgcgta gaccatgccg
      601 acatggtcga tctcgatcag cggcgggtgc gctggcatgg tcgggcggca gcgccgctca
      661 cttcaccgtc agcggcatcg ccaccttggt gaggaattcg gtcgtgtaga cgtccttgca
      721 atcgaccttc ttcgcgaggc ccatgtaggt gttgacgatg tcgaccgagc cgcacatctt
      781 cttgtcgtcg atccagccga tgcctttgtc ggcgtagttc ttcgtgcgca tcaggtcgag
      841 gccgagcatc atgttcggct cgatgatcga gaggtcgatc tcgggcacgc gcttcttgaa
      901 gatcgcgagc gcgcctttcg ggtcggccat cacgtcgcgc cagcccatgt aggcggcctc
      961 gaggaaggcg cgcagcacct tcgggcgctc cttcatcgtc ttctcgctcg ccatgatcga
     1021 aatgctgtag aggtcgaaac cggtgtcggc ccagggcatc atcaccgcgt tgccggcgcc
     1081 gagcgctttg tcgtagaaag gcaggccggt gctgtagtcg ccgatcacgt cgacgcgctt
     1141 ctcggcgagc gctgccatct tggccgccgg ctcgatgttg acccaggtca ccttgttctg
     1201 atcgatgttg tgcagcttgg cgaacgccgg ccaggcctgg cgctggccgt cgccgggcgg
     1261 cgcgccgacc gtcttgccct cgaggtcctt cggctttgtg accgggctgt ccttcctgct
     1321 gaagaagttg agcggggtct tgtcgaacac catcccgacc atcttgacgc gggcgccgcg
     1381 cgcatcggcg gcgagcacgg cgaccgtgtc ggcgaggccc gcgtcggcac ggtcggtgtc
     1441 gaccttcgcg atcgagtcgc ccgagccctt cgagttctcg agcgtcacat cgaggccggc
     1501 cttcgcgaaa tagcccttgt cgagcgcgac ccaataggcg gcgtgatcgc cgaccgcgaa
     1561 ccagttcagc gcaaacgtga acttctccgg cgcctgcgcc gacgccgcgc tcgccgagag
     1621 cgcgaggacc gccgcgccga acagggatcc aagcttcgat ttgctgctca tacgaccact
     1681 ccttgccagg ttgccaaaca ttcttcccga aaccctgctc tcacacctcg cccgcccacg
     1741 gcaccaggat gcgcgacagc gccgccacga agccgaacaa caagagcccc agcaccgaga
     1801 tccagaccag cgccgcaaac gcgaccgggg tgttcatgct gctctgcgtc gtgatgatca
     1861 cgtagccgag gccgcgctgc gaggcgacga actcgccgac gatggcgccg accacggccg
     1921 cggtggcggt gactttgagc gcactcagga tgtaagggta cgcgttcggc acgcggatct
     1981 tcaggaacac cttccacttc ggggcgttga agacgcggcc caggtcgacc aggtcctggt
     2041 cgatctgggt caggccgacg gcggtgttga tgaccaccgg aaagaacccg atcagtgcgc
     2101 cgatcaggat gttggggacg atgccgtagc ccatccacat caggaagagc ggcgcgatcg
     2161 cgaccttcgg cagcgtgttg acgaagacga ggaagggcgt cagcgcgcgc gacatcgcgg
     2221 ccgaccatgc gatggccatg ccgagcacga caccggcgac gccggcaagc acgaacgcgc
     2281 cgacgatctc gagcgcggtg acccagatgt ggcgcgccca cgggatctcg tcgccgaaca
     2341 tcgcgcgcag caccgaagcg gggctcggca gcaggtactc gcgcaggccg aggaacgaca
     2401 cggcgagctg ccacagcacg atgaaggcgg cgaagatcgc cagggccggc aggtagttca
     2461 caagccagcg aacggcctta gccatgcgcc accccgagcg cgttgcggcg gacatatccc
     2521 tcgtcgactt cgacgccgag cccggggtcc ttgggcaggc ggacctggcc gccgccgtgc
     2581 cagacgcgct cgcgcaggaa cggcgtgtcg atgtactgcg ggccgttcag ctgcagcggg
     2641 ttgatgtcga aggctgcggc gaggtgcagg ccggcggcaa ggccgagatc tgtttcggtg
     2701 agccccgaga gcgagagttc gaggccggcc gcttcggccg cctcgcacaa ctggcgcgaa
     2761 cgacagaggc cggcgttgcg ctgcaccttc gcgaccacga cgccgatcgc atcggcgcgc
     2821 acgtattcga gcaggtcggg caccgaacgc agcgactcgt cgatgccgat cgggatgggg
     2881 ctcgccgcct gcaggcgccg gtatccggac aggttgaagc cgttcaaggg ctgctcgaac
     2941 aacgcgatct ccagatccgc gaagcggcgc gcctggcgca gcgcggcatc gacccgatag
     3001 ccgcggttcg cgtcgacctg caggaagcgg gcgccggcgg cccggcgcgc gcgccgcacc
     3061 aggtcgagat cgccggcctc gccgtgcatg ccgatcttcg cgtcgaacat cgtgtagccg
     3121 gcttccagcc cttcggcgac gaggcgctcg gcgtccgcgg gctgctgcac cgacaccatc
     3181 cagctcaggt cgaagacctc gcgccggcag gcgccgagca actggtggac cggcacgccg
     3241 agggcgcggc cccaggcgtc gtgcgcggcc acgtcgagcg ccgacttggc gagcggcgaa
     3301 ccgggggtga cgcccgggtt gatggcgcgc tccatggcgc ggtgcagcgc atcgagattc
     3361 cagaccggta tgccgatcac cgccggcacg aggtagtggc gcagcgtgct gacgatggtc
     3421 tcggtggtct cgtaggtcca gcgcggcgtc ggcgtcgctt caccccaccc ggtcgcgccg
     3481 ctttcggtcg tgagcttcac gagcacccgg tgcgagaggg tgttcacatc gccggcgacc
     3541 ccgccggcca acacgaagac cgacttgaac gcaaacccga ggacgaaaac ctcgaccgtg
     3601 gcgatcttca tcgaggcgtg cgcatcaggc gagccagcgg tccaggttcg cggcgacgaa
     3661 cgcgtcatcg gacaggtcgg catgctgtgt cagaacccga tcgatctcgg ccgcctgccc
     3721 ggggccgagg ccctcgtgcg ggtcgaggca ccagataccc tcgagcaggc cctggcggcg
     3781 cagcacctcg tggcagccgg cgatgcagcc gtggaagtcg ttggcgacgt cgaagaacgc
     3841 gctgttgcag tcggtgacgc ggctgtcgag ggcgagcagg tcggcatcga tcgcgccgcc
     3901 cttctcctgc gcggcgacgg cggccttgca gcgctcgagc agagcgacgg cgctgcgcgt
     3961 ccagaccgac cagtgaccga gcaggccgcc gcgaaagcgc agcgtcaccg gcttgccgtc
     4021 gcgcgtcgcg gcgaacggag tgacgaggtc gagcacgatg tggtcgtcgt tgccggtgta
     4081 gagcacgacc cggtcttcgg catcggccag ggcgacgccg cgcatcacgt cgagcgtgcg
     4141 gtagcggttg aacggcgcga ccttgattgc gacgacattc tcgatcagcg cgaagcgggc
     4201 ccagaagcac gcgctcagtt cgaccccgcc aaccgccggc tgcaggtaga agccgatcaa
     4261 cgggatcgcc tcg
//
LOCUS       DASVHM010000347         2001 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1108149, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000347 DASVHM010000000
VERSION     DASVHM010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1108149"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..737)
                     /locus_tag="VF308_06570"
     CDS             complement(<1..737)
                     /locus_tag="VF308_06570"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX7436348.1"
                     /translation="MNETETRQRLAAILMADVAGYSRLMNCDERGTVAALDTARAVFR
                     TTIDAHRGRVIDMAGDSVLAVFETASGAVVSALAIQAELARRSAGVAEDCRMQFRIGI
                     HLGDVMEKADGTVYGDGVNIAARLEGIAEPGGVTVSDAVQCAVRQRLDATFDDLGEQR
                     VKNIATPVRAYRVRDQAPAAGSDVAPAPARPAQKRDRVDKPSIAVLPFDNMSGDPEQE
                     FFADGITEDIITELSRFRDLFVISRNSS"
     gene            1018..>2001
                     /locus_tag="VF308_06575"
     CDS             1018..>2001
                     /locus_tag="VF308_06575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX7436349.1"
                     /translation="MSFDSLGLAEPLLRAVREAGYTTPTPIQSQAIPAVLSGGDVMGG
                     AQTGTGKTAGFVLPLLQRLMDKPAVRDARGKLPIRALILTPTRELAAQVEESVRTYGK
                     HSKLTSMVMFGGVGMQPQIDKLRRGVDILVATPGRLLDHHGQRTLDLSHVEIFVLDEA
                     DRMLDMGFLPDIKKVLAVVPAKKQSLLFSATFSDEIKALADRLLNAPVLIEVARRNQT
                     ADLIAQKVHPVGREMKKDLLTHLIKDNDWHQVLVFTRMKHGANRLVEHLLKQGISAMA
                     IHGNKSQTARTKALADFKKGDLQVLVATDIAARGIDIDQLPHVVNFEMPNVP"
BASE COUNT          327 a          729 c          643 g          302 t
ORIGIN      
        1 gaagagttgc gcgagatgac gaagagatcg cgaaagcgcg acagctcggt gatgatgtcc
       61 tcggtgatgc cgtcggcgaa gaactcctgc tccgggtcgc cgctcatgtt gtcgaacggc
      121 aggaccgcga tcgacggctt gtcgacgcgg tcgcgcttct gcgccgggcg cgccggagcc
      181 ggcgcgacgt cgctgcccgc cgccggcgcc tgatcgcgca cgcggtaggc gcgcaccggg
      241 gtcgcgatgt tcttgacgcg ctgctcgccc aggtcgtcga aggtcgcgtc gaggcgttgc
      301 cgcaccgcgc actggacggc gtcggagacg gtgacgccgc cgggctcggc gatgccctcg
      361 aggcgcgcgg cgatgttgac gccgtcgccg tagaccgtgc cgtcggcctt ctccatgacg
      421 tcgccgagat ggatgccgat ccggaactgc atgcggcagt cctcggcgac cccggctgaa
      481 cggcgcgcca gctcggcctg gatcgccagc gccgagacga ccgcgccgct cgccgtctcg
      541 aacaccgcca gcaccgaatc gccggccatg tcgatgacgc ggccgcggtg cgcgtcgatg
      601 gtcgtgcgga agacggcgcg cgcggtgtcg agcgcggcga cggtgccgcg ctcgtcgcag
      661 ttcatcaggc gcgagtagcc cgccacgtcg gccatcagga tcgcggccag gcgctgtcgc
      721 gtctcggtct cgttcacgcg cgatgccgcc gggagatgct catgacgcga atggtagaac
      781 ttcggcgccg ttcgagccgc tggcgacgac gcacgccgcg tcgccctgca ggccccaacg
      841 acccgcccga cgcgatccgt cacgtcttgg ccgggttcac cctacaatgc gcgctcgcgt
      901 cgcccagttt tccagtcagc gtcgacgcag tcgcttccga ctccctcccc ccgtctgcct
      961 tcgactggcg ctcgctagaa gcgagcagca ggccgatgaa ttaggcagaa ctcccccatg
     1021 tctttcgatt ctctcggcct cgccgagccc ttgctgcgcg ctgttcgcga agcgggctac
     1081 accactccca ccccgatcca gtcccaggcg atccccgccg tcctctcggg cggcgacgtc
     1141 atgggcggcg cccagaccgg aaccggcaag accgccggct tcgtcctgcc gctgctgcag
     1201 cgcctgatgg acaagcccgc ggttcgcgat gcgcgcggca agctgccgat ccgcgccctc
     1261 atcctcacgc ccacgcgcga gctcgcggcg caggtcgagg aaagcgttcg cacctacggc
     1321 aagcactcga agctgacgag catggtcatg ttcggcggcg tcggcatgca gccgcagatc
     1381 gacaagctcc gccgcggcgt cgacatcctc gtcgccaccc cggggcgcct gctcgaccac
     1441 cacggccagc gcacactcga cctctcgcat gtcgagatct tcgtgctcga cgaagccgat
     1501 cgcatgctcg acatgggctt cctgcccgac atcaagaagg tgctcgcagt ggtgccggcg
     1561 aagaagcaga gcctgctctt ctcggcgacc ttcagcgacg agatcaaggc gctcgccgac
     1621 cggcttctca acgctccggt gctgatcgag gtcgcgcgcc gcaaccagac cgccgacctg
     1681 atcgcccaga aggtgcaccc ggtcggccgc gagatgaaga aggatctcct gacccatctc
     1741 atcaaggaca acgactggca ccaggtgctg gtcttcacgc gcatgaagca cggcgccaac
     1801 cgcctggtcg agcatctgct caagcaaggc atcagcgcga tggcgatcca cggcaacaag
     1861 agccagacgg cgcgcaccaa ggcgctcgcc gacttcaaga agggcgacct gcaggtgctc
     1921 gtagccaccg acatcgcggc gcgcggcatc gacatcgacc agctccccca cgtcgtcaac
     1981 ttcgagatgc cgaacgtccc c
//
LOCUS       DASVHM010000348         4068 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_892544, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000348 DASVHM010000000
VERSION     DASVHM010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4068
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_892544"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..175)
                     /locus_tag="VF308_06580"
     CDS             complement(<1..175)
                     /locus_tag="VF308_06580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012351448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7436350.1"
                     /translation="MNALESQLGYPFGEALPELGATREVAPGVRWLRMKLPFALDHIN
                     LWLLRDELEGDDGS"
     gene            227..658
                     /locus_tag="VF308_06585"
     CDS             227..658
                     /locus_tag="VF308_06585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013107132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEX7436351.1"
                     /translation="MPRSAAAHPSTPLAPTFSIGELAREFDLTTRAIRFYEDCGLLAP
                     LRRGRNRVYTLRDRTRLKLTLRGKRLGLTLAEVKELVDMYESPRDTQPQLKKFLVVLA
                     THREQLEQQLADLQATLGEVREQEREARKLLAEGQRRAHLV"
     gene            711..1163
                     /locus_tag="VF308_06590"
     CDS             711..1163
                     /locus_tag="VF308_06590"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX7436352.1"
                     /translation="MTPIDPDYEQRCRDSFERQPAMAALGIGIVEVGPGRVVLTMAHR
                     ADLTQQHGFLHAGIVSTGLDSACGYAAFTLMPADAGVLTIEFKVNLLAPARGPELSFE
                     ATVTKPGRTISVVDGRAYQSEPGAPERKLFATMTATIMTITGRADIRH"
     gene            1204..2382
                     /locus_tag="VF308_06595"
     CDS             1204..2382
                     /locus_tag="VF308_06595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013899874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HEX7436353.1"
                     /translation="MNLPGLDHQLGEDIDALRDAVREFAQAEIAPRAAALDRDDQFPM
                     DLWAKMGTLGVLGITVAEEYGGAGMGYLAHMVAMEEISRASASVGLSYGAHSNLCVNQ
                     IKRNGSAAQKLKYLPKLISGEHVGALAMSESGAGSDVISMKLRAEEKGGYYRLNGSKM
                     WITNGPDADTLVVYAKTEPDLGARGVTAFLIEKGMKGFSVAQKLDKLGMRGSHTGELV
                     FQDVEVPWENVLGALNGGAKVLMSGLDYERAVLAAGPVGIMQAVLDNVMPYTHDRKQF
                     GRAIGEFQLIQGKVADMYTVLQAARSFCYTVGKNLDRLGFEHVRQVRKDCASVILWCA
                     EKATWMAGEGIQIFGGNGYINDYPMGRLWRDAKLYEIGAGTSEVRRMLIGRELFSETM
                     "
     gene            2418..3095
                     /gene="can"
                     /locus_tag="VF308_06600"
     CDS             2418..3095
                     /gene="can"
                     /locus_tag="VF308_06600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0015976 - carbon utilization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HEX7436354.1"
                     /translation="MSTDLKDLLDGNRRWAAETERRKPGFFTGLLGQQAPHYLWIGCA
                     DSRVPANEILGLLPGDVFVHRNVANVVVHSDLNALSVMQFAIDMLQVRHVIVVGHYGC
                     GGVAAALHDRRIGIADNWLRHVHDVRNKHRAWLEGIADDARRLDALCELNVLEQALNV
                     CETTVVQDAWARGQSVVVHGWVYGLHDGLLQDLKITASALAEVGAAYALAVRALKARF
                     DGARVES"
     gene            3095..>4068
                     /locus_tag="VF308_06605"
     CDS             3095..>4068
                     /locus_tag="VF308_06605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate dehydrogenase kinase/phosphatase AceK
                     regulatory subunit"
                     /protein_id="HEX7436355.1"
                     /translation="MFPRQLTDSRGFGIAQAMLEGFNRHYRLFREASAEAKQRFEQAD
                     WHGQQRTQRERIEFYDLRVDEAADRLQREFQAATLPKDVWQQVKLHYIGLLVDHHQPE
                     LAETFFNSVTTKILHRSYFHNDFIFVRPAVSTEYIENDEPAALPTYRAYYPTKETLRE
                     TWLRIVNNFQLEREFDDLERDVDAVLGAFAIELGQFAMRANFQVQVLSSLFYRNKGAY
                     LVGKVINGFYETPFALPILHDANGKLVIDTALFGEDDLLLLFSFARAYFMVAMEVPSA
                     YVQFLRSMMPRKPRSELYSALGLQKQGKNTFYRDFLMHMRHSSDKFRTA"
BASE COUNT          714 a         1402 c         1306 g          646 t
ORIGIN      
        1 tgctgccgtc atcgccctcg agctcgtcgc gcaggagcca gaggtttatg tgatcgagcg
       61 cgaacggcag cttcatgcgc agccagcgca cgccgggcgc gacttcgcgg gtcgcgccga
      121 gctccggcag ggcctcgccg aacgggtagc ccagttgcga ttcgagcgca ttcatcgtct
      181 ggccttaaac tttacgtaaa cgtcaattgc agccagtgta agaccgatgc cccgttccgc
      241 tgccgcgcac ccatcgaccc cgctggcgcc gacgttttcg atcggcgagc tggcgcgcga
      301 gttcgacctg accacccggg cgatccgctt ctacgaggat tgcggcctgc tcgcgccgct
      361 gcgccgcggc cgcaaccggg tctacacctt gcgcgaccgc acccgcctca agctcaccct
      421 gcgcggcaag cgcctcgggc tcacgctcgc cgaggtcaag gaactggtcg acatgtacga
      481 gtcgccacgc gacacgcagc cgcagctgaa gaagtttctc gtcgtcctcg cgacccaccg
      541 cgagcagctc gagcagcagc tcgccgacct gcaggcgacg ctcggcgaag tgcgcgagca
      601 ggaacgggaa gcccgcaagc tcctcgccga aggccagcgg cgggcccacc ttgtctagaa
      661 ttgacgtata cgtcaattcc aagccgtcga gcctccgtcc gtcgcgcgcc atgactccca
      721 tcgaccccga ctacgaacaa cgctgccgcg actcgttcga gcgccagccg gcgatggccg
      781 cgctgggcat cggcatcgtc gaggtcggcc ccggccgggt cgtgctgacg atggcgcacc
      841 gcgccgacct gacgcagcag cacggcttcc tgcatgccgg aatcgtctcg acggggctcg
      901 attcggcctg cggctatgcc gccttcacgc tgatgccggc cgacgcgggc gtgctgacga
      961 tcgaattcaa ggtcaacctg ctcgcgccgg cgcgcggccc cgagctgagc ttcgaagcca
     1021 cggtcacgaa gcccggccgt acgatcagcg tcgtcgatgg ccgcgcctac cagtccgagc
     1081 ctggcgcgcc cgagcgcaaa ctctttgcga cgatgacggc gacgatcatg accatcaccg
     1141 gccgcgccga catccggcac tgacgcgcca ggggcgtcat tccacctgta cggagacatc
     1201 gcgatgaacc tgcccggact cgaccaccag ctcggcgaag acatcgacgc gctgcgcgac
     1261 gcggtgcgtg aattcgccca agccgagatc gcgccgcgcg ccgcggcact cgaccgcgac
     1321 gaccagttcc cgatggatct gtgggccaag atgggcaccc tcggcgtgct cggcatcacc
     1381 gtcgccgagg aatacggcgg cgccggcatg ggctacctcg cgcacatggt cgcgatggag
     1441 gaaatcagcc gcgccagcgc ctcggtcggg ctttcctacg gcgcccacag caatctctgc
     1501 gtcaaccaga tcaagcgcaa cggcagcgcg gcgcaaaagc tcaagtacct gcccaagctg
     1561 atctccggcg aacacgtcgg cgcgctcgcg atgagcgaat cgggcgcggg ctcggacgtg
     1621 atctcgatga agctcagggc cgaggagaag ggcgggtact accgtctcaa cggcagcaag
     1681 atgtggatca ccaacggccc ggatgccgac acgctcgtcg tctacgccaa gaccgagccc
     1741 gatctcggcg cgcgtggggt cacggcgttc ctgatcgaga agggcatgaa gggcttctcg
     1801 gtcgcgcaga agctcgacaa gctcggcatg cgtggcagcc acaccggcga actcgtcttc
     1861 caggacgtcg aggtgccgtg ggaaaacgtt ctcggcgcgt tgaacggcgg cgccaaggtg
     1921 ctgatgagcg ggctcgacta cgagcgcgcc gtgctcgccg ccgggccggt cggcatcatg
     1981 caggcggtgc tcgacaatgt catgccttac acccacgacc gcaagcagtt cggtcgggct
     2041 atcggcgaat tccagctgat ccagggcaag gtggccgaca tgtacacggt attgcaggcc
     2101 gcgcgctcgt tctgctacac ggtgggaaag aatctcgacc gtctcggctt cgagcacgtg
     2161 cgccaggtgc gcaaggactg cgcgtcggtg atcctctggt gcgccgagaa ggcgacctgg
     2221 atggcgggcg agggcatcca gatcttcggc ggcaacggct atatcaatga ctacccgatg
     2281 gggagactct ggcgcgacgc caagctgtac gagatcggcg ccggaacctc ggaagtgcgg
     2341 cgcatgctga tcggccgcga gctgttctcg gaaacgatgt gacggcgctg tccggaccac
     2401 ctgcgcactc tcgatccatg agcaccgacc tgaaggatct cctcgacggc aatcggcgct
     2461 gggccgccga gaccgagcgg aggaagccgg gcttcttcac cggcctgctc gggcagcagg
     2521 cgccgcatta cctgtggatc ggctgcgccg acagccgcgt gccggccaac gagatcctcg
     2581 gattgctgcc gggcgatgtg ttcgtgcatc gcaacgtcgc caacgtcgtg gtgcactccg
     2641 acctcaacgc cctgagcgtg atgcagttcg ccatcgacat gctgcaggtc aggcacgtca
     2701 tcgtcgtcgg ccattacggc tgtggcggcg tggcggcggc gctgcacgac cggcgcatcg
     2761 gcattgccga caactggctc cgccatgtgc acgacgtgcg caacaagcac cgcgcctggc
     2821 tcgaaggcat tgccgacgac gcgcggcgtc tcgacgcttt gtgcgaactc aacgtgctgg
     2881 agcaggcgct gaacgtctgc gaaaccaccg tcgtgcagga cgcctgggcg cgcggccagt
     2941 cggtcgtcgt gcacggctgg gtctacgggc tgcacgacgg cctgctgcag gacctgaaga
     3001 tcacggccag cgcgctcgcc gaggtcggcg cggcctatgc cctcgccgtg cgggcgctga
     3061 aagcgcgctt cgatggcgcg cgcgtggagt cctgatgttt ccccggcagc tcaccgactc
     3121 gcgcggcttc ggcatcgccc aggcgatgct cgagggcttc aaccggcact accggctgtt
     3181 tcgcgaggcc agcgccgagg ccaagcaacg cttcgagcag gccgactggc atggccagca
     3241 gcgcacacag cgcgaacgga tcgagttcta cgacctgcgc gtcgacgagg ccgccgaccg
     3301 gctgcagcgc gagttccagg cggccacgct gcccaaggac gtgtggcagc aggtcaagct
     3361 gcactacatc ggcctgctgg tcgaccacca ccagcctgaa ctcgccgaga ccttcttcaa
     3421 ctcggtgacg acgaagatcc tgcaccggag ctatttccac aacgacttca tcttcgtgcg
     3481 ccccgccgtt tcgaccgagt acatcgagaa cgacgagccc gccgcgctgc ccacctatcg
     3541 cgcctactac ccgacgaagg agacgctgcg cgagacctgg ctgcgcatcg tcaacaactt
     3601 ccagctcgag cgcgagttcg acgacctgga gcgcgacgtc gacgcggtgc tcggcgcgtt
     3661 cgcgatcgag ctcgggcaat tcgccatgcg cgccaacttc caggtgcagg tgctctcgtc
     3721 gctgttctac cggaacaagg gcgcctacct ggtcggcaag gtcatcaacg ggttttacga
     3781 gaccccgttc gcgctgccga tcctgcacga cgcgaacggc aagctcgtca tcgacaccgc
     3841 gctcttcggc gaggacgacc tgctgctgct gttcagcttc gcgcgcgcct acttcatggt
     3901 cgcgatggag gtgccctcgg cttacgtgca gttcctgcgc tcgatgatgc cgaggaagcc
     3961 ccgttccgag ctctacagcg cgctcggcct gcagaagcag ggcaagaaca ccttctatcg
     4021 cgacttcctg atgcacatgc ggcactcgtc cgacaagttc cgcaccgc
//
LOCUS       DASVHM010000349         2734 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1178797, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000349 DASVHM010000000
VERSION     DASVHM010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2734
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1178797"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..602
                     /locus_tag="VF308_06610"
     CDS             <1..602
                     /locus_tag="VF308_06610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018905992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX7436356.1"
                     /translation="YQAGERFTNLYVLNAGSFKIVNLSSDGREQVVGLHMRGDWLGFD
                     GIADGSYTCDAIAMDTGEVWAIRYDALVATCPRQPALLRVLHEARSREIGRDRESLMS
                     MCTLTADARVAEFLRDWADSLAQRGLRTDQITLRMTRAEIGNYLGMTLETVSRALSRL
                     ARGKLIFFAEKGRRDIHIPEVEALTDFVQRSLAPAPLMQ"
     gene            complement(622..2658)
                     /locus_tag="VF308_06615"
     CDS             complement(622..2658)
                     /locus_tag="VF308_06615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019657376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEX7436357.1"
                     /translation="MFRSIFAAYPDALLVVDARGTIMLANPAAAMLLGYSVEELAGLA
                     VDALVPDSIRPRHAAYREGYGRNPRARPMGNQMELVAKRRDGREVMVEIALSPLLDHG
                     LPFVVAAIRDIGAYPRVRQALQRTRYSEHLAQLGRLAVDARDPQVLLEQVPAIAAEAL
                     QGDQALVFLLEPNRLEFRIASGDGAMTGEAVGTAIANTPRTPPGFVFAEGRPVVVADY
                     REERRFDVPEDYLRAGLVSALAVPLSDRGRVIGSLTVRSRKAQHFGDDEVRFLESLSN
                     LLATSLQRAQSEEALNHAQRLESVGQLTGGIAHDFNNLLTVIQGNLQVLDELPAIAAD
                     AHARQLVDAAARAARRSAELTGKLLAFSRRQVLQPSAIDVPALLESLAGMLRRTLDQR
                     IRIEVDASASCPPCLADPGQLEAALLNIAINARDAMPDGGTLRFSGELCRSLPLDVQH
                     EPSSAAAGDGDYVAIAISDSGTGMSEEIKERAFEPFFTTKAIGRGTGLGLSTVYGFAK
                     QSRGAVAIASAPGAGTTVTLYIPRLRKPAAALPEAARAGDHVPAGLNVLLVEDDTEVR
                     SLMRTFLGTLGCRTTACANAQEALLALTPEARFDLLLTDIALGSGLRGTELARQAQQR
                     TPGLAVLLMSGFSSELLDADRDSPPSWELLRKPYSRAELAQAICKVIGTDPDAP"
BASE COUNT          411 a          932 c          994 g          397 t
ORIGIN      
        1 tctaccaggc cggcgagcgc ttcaccaacc tctacgtgct aaatgccggc tccttcaaga
       61 tcgtcaacct gtcgtccgac gggcgcgagc aggtcgtcgg tctgcacatg cgcggcgact
      121 ggctcggctt cgacggcatc gccgacggca gctatacatg cgacgcgatc gcgatggaca
      181 ccggcgaggt ctgggcgatc cgctacgacg cgctcgtcgc cacctgcccg cgccaacccg
      241 cgctgctcag ggtgctgcac gaggcgagga gccgcgagat cggccgcgac cgcgaatcgc
      301 tgatgtcgat gtgcaccttg accgccgatg cgcgcgtcgc cgagttcctg cgcgactggg
      361 ccgattcgct ggcgcagcgc ggtctgcgca ccgaccagat caccttgcgc atgacgcgcg
      421 ccgagatcgg caactacctc ggcatgacgc tcgagacggt gagccgcgct ctgtcacggc
      481 tcgcacgcgg caagctgatc ttcttcgccg agaagggccg ccgcgacatt cacattccgg
      541 aagtcgaggc gctgaccgat ttcgtccagc gcagtctcgc acccgcgcct ttgatgcaat
      601 gagggataga ccggacgacg ctcagggcgc gtccgggtcg gtgccgatca ccttgcagat
      661 tgcctgcgcg agttcggcgc gcgaataggg cttgcgcaac agctcccagc tcggcggcga
      721 gtcgcggtcg gcatcgagca gctcggacga aaagcccgac atcaacagca ccgcgagacc
      781 gggcgtgcgt tgttgcgcct ggcgcgcgag ttcggtgccg cgcaggccgg agccgagcgc
      841 gatgtcggtc agcagcaggt cgaagcgcgc ctcgggcgtg agcgcgagca gggcctcctg
      901 cgcgttggcg cacgccgtcg tgcggcagcc gagcgtgccg agaaaggtcc gcatgaggct
      961 gcgcacctcg gtgtcgtcct cgaccagaag cacgttcagc cccgcaggga cgtggtcgcc
     1021 agcgcgcgcc gcttcgggca gcgccgcggc aggcttgcgc aagcgcggga tgtagagcgt
     1081 gacggtggtg cccgcgccgg gtgcgctcgc gatcgcgacc gcgccgcgcg attgcttggc
     1141 aaagccgtag accgtgctca gcccgagccc ggtgccgcgt ccgatcgcct tggtcgtgaa
     1201 gaacggctcg aacgcgcgct ccttgatctc ctcggacatg ccggtgccgc tgtcggaaat
     1261 cgcgatggcg acatagtcgc cgtcgcccgc cgccgccgag ctcggttcat gctgcacatc
     1321 gagcggcagc gaacggcaca gctcgcccga gaagcgcagc gtgccgccgt cgggcatcgc
     1381 gtcgcgggcg ttgatcgcga tgttgaggag cgcggcttcg agctgccccg ggtcggccag
     1441 gcagggcgga cacgacgcac tggcatcgac ctcgatgcgg atgcgctggt cgagcgtgcg
     1501 gcgcagcatg ccggccaggg actcgagcag cgccggcacg tcgatggcgc tcggctgcag
     1561 cacctgccgg cgcgaaaacg cgagcagctt gccggtcagc tcggcgctgc ggcgcgcggc
     1621 gcgggcggca gcgtcgacga gctgccgggc gtgcgcatcg gcggcgatcg cgggcagttc
     1681 atcgagcacc tgcagattgc cctggatcac ggtcagcagg ttgttgaaat cgtgcgcgat
     1741 gccgccagtc aactggccga cgctttcgag ccgttgcgca tggttcagcg cctcctcgct
     1801 ctgggcgcgc tgcaggctcg tcgcgagcag gttcgaaagc gactcgagga accggacttc
     1861 gtcgtcgccg aagtgctgcg ccttgcgcga gcgcaccgtc agcgatccga tgacgcggcc
     1921 gcggtccgag agcggcaccg cgagcgcgct gacgagcccg gcgcgaaggt agtcctcagg
     1981 aacgtcgaag cgccgctcct cgcggtagtc ggcgacgacg acgggacggc cctcggcaaa
     2041 gacgaagccg ggcggggtgc gcggcgtgtt cgcgatcgcg gtgccgaccg cctcgccggt
     2101 catcgcgcca tcgccgctcg cgatccggaa ttcgaggcgg ttcggctcga gcaggaacac
     2161 cagggcctgg tcgccctgca gcgcctcggc ggcgatcgcc ggcacctgtt cgagcagcac
     2221 ctgcggatcg cgcgcgtcga ccgcgaggcg gccgagctgc gcgaggtgtt cgctgtagcg
     2281 cgtgcgttgc agcgcctgcc tgacgcgcgg ataggcgccg atgtcgcgga tcgccgcgac
     2341 cacgaacggc aggccgtggt ccagcagcgg gctgagcgcg atttcgacca tcacctcgcg
     2401 gccgtcgcgc cgcttggcca cgagttccat ctgattgccc atcggccgcg cgcgcgggtt
     2461 gcggccatag ccctcgcggt aggccgcatg gcgcgggcgg atgctgtcgg gcacgagcgc
     2521 gtcgaccgcc aggccggcga gctcctcgac gctgtagccg agcagcatcg ccgcggccgg
     2581 attggcgagc atgatcgtgc cgcgcgcgtc gaccacgagc agcgcgtccg gataggcggc
     2641 gaagatggac cggaacacca agcgctcgtc gaacccggtg ggaagggggg gcggcggcgc
     2701 ggattggggc atggcggcag ctcgcgctca gcct
//
LOCUS       DASVHM010000350         3417 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_97967, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000350 DASVHM010000000
VERSION     DASVHM010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97967"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..172)
                     /locus_tag="VF308_06620"
     CDS             complement(<1..172)
                     /locus_tag="VF308_06620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX7436358.1"
                     /translation="MNFKHLYYFWATASAGGVMRAGEQLHTTPQTISGQIKLLEARLG
                     CSLFRKSGRRLEL"
     gene            308..1003
                     /locus_tag="VF308_06625"
     CDS             308..1003
                     /locus_tag="VF308_06625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013543246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEX7436359.1"
                     /translation="MAEPLQYARRNPVAEAQVSQRNRVLRNTYWLLALSMVPTVLGAW
                     IGVATGISRAMSPGIGLIVFLLGAFGFMYAIEKTKDSAAGVPVLLGFTFFMGLMLARL
                     VGAVLGLANGAGLIMMAFAGTGAVFFGMAALSSVIKRDLSTMGKWLFSGAVMLLVAGI
                     ANFFIQSSALMITLAVLAVAIFSAFILYDLKRVQDDLETNYITATLGVYLSLYNVFQS
                     LLALFGIAGGRDE"
     gene            1009..1746
                     /locus_tag="VF308_06630"
     CDS             1009..1746
                     /locus_tag="VF308_06630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015865779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEX7436360.1"
                     /translation="MDFLLDPNVWVAFAMLTALEIVLGIDNIIFISILVGRLPAALRD
                     RARQLGLGFAMLSRLALLFSLTWVMGLTDDLITAFGMGISGRDIVLILGGLFLLWKAS
                     HEIFTAVEARDEGAPELPKMASAAAGVFWATIVQIAVIDIVFSVDSVITAIGMLDQLG
                     VMVAAVIASVGVMLFAAKPIGDFVDRHPSVKVLALAFLVMVGMALTAEAFDVHVPKGY
                     IYAAMAFSLGVEMLNIRARAKRIAKAA"
     gene            complement(1743..2807)
                     /locus_tag="VF308_06635"
     CDS             complement(1743..2807)
                     /locus_tag="VF308_06635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007852539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEX7436361.1"
                     /translation="MPIAIRAETGMIARTSSAAWVKGVVDMFSAEGIDVEDLFDAAGL
                     DSAALHDPAMRFLIDDVSVLWELAVARSGKATLGLSRELAMTYGNLDVVAYAMMTCET
                     LLEGLNRLARYMNVVSDAATFALTPAEGGYWLELGHMGGERPVPRQRVEFGMLKVLTH
                     CSWITGRDLRALSIEFVYPEPPDQRPHCEAFQCPLRFGQNANRALLRTADLALPLSGR
                     NATLATLHERLAEQRLDALHGARTSRLVRELIAARVAGPDLSREGIAAALHISSRTLQ
                     RRLEEEGTSFQQLRDDTRRELAQRYLREPGSNSLSRVAERLGFEDQSNLFRACKRWFG
                     ESPGRYRARFGRSQEDRAVL"
     gene            2916..>3417
                     /locus_tag="VF308_06640"
     CDS             2916..>3417
                     /locus_tag="VF308_06640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015014394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX7436362.1"
                     /translation="MPSNAFFAAALAALAVVSLSACGGSDDVPPTTRATAFGTVEGNN
                     DAAASGTFSWKGVPFAKSPVGALRWKGPVDPDAWTTPRSTKQFGNACVQYGRIYGPGS
                     NNTYDATIGTTLNQAVGSEDCLYLNIWRPATTEASLPVIVFIHGGSNVSGYTADPVYD
                     GATLART"
BASE COUNT          548 a         1140 c         1095 g          634 t
ORIGIN      
        1 tcagctcgag gcgccgcccg ctcttcctga acaggctgca gccaaggcgc gcctcgagca
       61 gcttgatctg gccggagatc gtctgcgggg tcgtgtgcag ctgctcgccg gcgcgcatca
      121 cgccgccggc gctggcggtg gcccagaagt agtagaggtg cttgaagttc atcgtctgtc
      181 gccgggttga gtgtcgagct cgggcgcctt cgattcgaaa atctcgaagt cactgctccg
      241 caaatacgaa tttacgcgaa gtgtcatcgc ccttagattc gtgcctccat cctcccagga
      301 gcctgccatg gccgaaccgc ttcagtacgc tcggcgcaac ccagtcgcag aggcgcaagt
      361 ctcgcaacgc aaccgcgtgc tgcgcaacac ctattggctg ctcgcccttt cgatggtgcc
      421 gaccgtgctc ggtgcctgga tcggcgtggc gaccggcatc tcccgggcga tgtccccggg
      481 gatcggcctc atcgtcttcc tgctcggcgc cttcggcttc atgtacgcga tcgagaagac
      541 caaggattcc gccgccggcg ttccggtgct gctcggcttc accttcttca tgggcctgat
      601 gctcgcgcgc ctcgtcggcg cggtgctcgg cctggcgaac ggcgccgggc tgatcatgat
      661 ggcgttcgcg ggcaccggtg cggtcttctt cggcatggcc gcgctctcct cggtgatcaa
      721 gcgcgacctg agcacgatgg gcaaatggct cttcagcggc gccgtgatgc tgctcgtcgc
      781 cggcatcgcg aacttcttca tccagtcgag cgcgctgatg atcacgctcg cggttcttgc
      841 ggtcgccatc ttctcggctt tcatcctgta cgacctgaag cgagtccagg atgacctcga
      901 gaccaactac atcacggcca cgctcggcgt ctacctgagc ctctacaacg tgttccagtc
      961 gttgctggcg ctgttcggca tcgccggtgg gcgggacgaa taagccgaat ggactttctt
     1021 ctcgacccaa acgtgtgggt cgccttcgcg atgctgacgg cgctggagat cgtgctcggc
     1081 atcgacaaca tcatctttat ctcgatcctc gtcggccgcc ttcctgcggc actgcgcgac
     1141 agggcgcgtc agctcgggct cggcttcgcg atgctctccc ggctggcgct gctgttctcg
     1201 ctgacctggg ttatgggcct caccgatgac ctcatcacag ccttcggcat gggcatcagc
     1261 ggccgcgaca tcgtgctgat actgggcggc ctgttcctgc tctggaaggc ctcgcacgag
     1321 atcttcacgg cggtcgaggc gcgcgacgag ggcgcaccgg agctgccgaa aatggcctcg
     1381 gccgcggccg gtgtgttctg ggcgacgatc gtccagatcg cggtgatcga catcgtcttc
     1441 tcggtcgact cggtgattac ggcgatcggc atgctcgacc agctcggcgt gatggtcgcc
     1501 gcggtcatcg cctcggtcgg cgtgatgctg ttcgcggcca agccgatcgg cgatttcgtc
     1561 gaccggcatc cgtccgtcaa ggtgctcgct ctcgcgtttc tggtgatggt cggcatggcc
     1621 ttgacggccg aggccttcga cgtgcacgtg cccaagggct acatctacgc ggcgatggcg
     1681 ttctcgctcg gggtcgaaat gctgaacatc cgcgcacgcg cgaagcggat cgcgaaggcg
     1741 gcctagagta ctgcccggtc ctcctgcgag cgaccgaatc gcgccctgta tcggcccggc
     1801 gattcgccga accagcgctt gcaggcgcga aacaggttgc tctggtcctc gaaccccagg
     1861 cgctcagcaa cgcgtgacag ggagttgctg ccgggctcgc gcagatagcg ctgggcaagc
     1921 tcgcggcgcg tgtcgtcgcg cagttgttgg aacgaggttc cctcttcttc gagccgccgc
     1981 tgcagggtgc gactgctgat gtgcagcgct gcggcgatgc cctcgcggct gaggtcggga
     2041 ccggcgacac gcgccgcgat gagttcgcgc acgagacggc tggtcctggc tccatgaagc
     2101 gcgtcgaggc gctgctccgc gagcctttca tggagggtcg ccagcgtagc gttgcgtccc
     2161 gaaagcggca gggccagatc ggccgtgcgc aacagcgcgc ggttcgcgtt ctggccaaag
     2221 cgcagcgggc attgaaacgc ttcgcaatgc gggcgctgat cgggcggctc cggatacacg
     2281 aactcgatgc tcagggcgcg cagatcgcgc cccgtgatcc agctgcagtg ggtcagaacc
     2341 ttcagcatgc cgaattccac gcgctgccgc ggcaccggcc gctcgccgcc catgtggccg
     2401 agctcgagcc aatagccgcc ttcggccggg gtcagcgcga aggtcgccgc atcgctgacg
     2461 acattcatgt agcgcgccag gcggttcaag ccctcgagca gcgtctcgca agtcatcatg
     2521 gcgtaggcca cgacgtcgag gttgccatag gtcatcgcca gttcgcgaga caggccgagc
     2581 gtcgccttgc cggaacgcgc gaccgcgagt tcccacaaca cgctgacatc gtcgatcaga
     2641 aaccgcatcg ccggatcgtg gagcgcggcg ctgtcgagcc cggccgcgtc gaacagatct
     2701 tcgacatcga tcccctcggc cgagaacatg tcgaccacgc ccttgaccca ggcggctgaa
     2761 ctggtacgcg caatcattcc tgtctccgca cgaatcgcga tcggcacatg atcctggcgc
     2821 tgcgaagtca attaagtggc gcgccgagtc agtgtcttgc gggtccgcga ttcctagaat
     2881 atccgaaaca agtcggcatt ccggggagac aaaccatgcc ttcgaacgcg ttcttcgccg
     2941 cggcccttgc cgcgctcgca gtcgtcagcc tgagtgcctg cggcggcagc gacgatgtcc
     3001 cgccgaccac gcgcgcgacg gccttcggca ccgtcgaagg caacaacgac gcggccgcct
     3061 cgggcacctt ttcctggaag ggcgttccct tcgccaagtc gccggtcggc gcattgcgct
     3121 ggaaggggcc ggtcgatccg gatgcatgga cgacgccccg atcgacgaag caattcggca
     3181 atgcctgcgt gcagtacggc cgcatctacg ggcccggaag caacaacacc tacgacgcga
     3241 ccatcggcac cacgctgaac caggcggtcg gcagcgaaga ctgcctgtat ctcaacatct
     3301 ggcgtccggc caccaccgaa gcgagcctgc cggtgatcgt gttcatccac ggcggcagca
     3361 acgtctccgg ttacaccgcc gacccggtgt acgacggggc cacgctcgcg aggacag
//
LOCUS       DASVHM010000351         3872 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_312366, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000351 DASVHM010000000
VERSION     DASVHM010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3872
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312366"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..880)
                     /locus_tag="VF308_06645"
     CDS             complement(<1..880)
                     /locus_tag="VF308_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017524062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436363.1"
                     /translation="MKRVPVAIVLAGAVLATLPWLGLPAFYDSFFYLVLSWIVLATSW
                     NILSGYAGYFSFGHGAFFGAGLYTTATLATRANWPFLWTLPAAAGVAALLGLGLGAVV
                     FRVKRVRGELFALLTLAVTFVLSTIVLNTPIDGGPGVYLNSVAVPALGPTQAGTFYLL
                     ALAAAVGTLLIAWAISRSKFGAGLFAIHDDEVAAEVMGVPTYRYKLLALAVSSGLAGV
                     AGGIHALFISYVTAGEVFSITVPLTVVLMSVLGGTRHWAGPAVGATVITILLYSFTAA
                     DYAVAGKAMMGAVLIAT"
     gene            complement(877..1749)
                     /locus_tag="VF308_06650"
     CDS             complement(877..1749)
                     /locus_tag="VF308_06650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017524061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436364.1"
                     /translation="MSGFAWPSLNLLSQSILSGIFVGALYGLMGLGLGLSWGLLRLIN
                     LAHFAFAFLAAYLCYQLSHKGGMDPLLTLALIVPLFFAIGAALHWVMARFALTPFSSL
                     LLTFGLTGIIESLIQSIWTADFRKLESSYGQQKFRIGELFVPVPELITLVLAVALSCA
                     VWSVLRYTDAGRAMRAAAEDAPVAAAFGINVRALSLVLAGTCAALASVAGVCLALLFS
                     LAPSQIYAWIGVVFAAVMLGGLGSAWGPLVAGLLLGISESVTMALTSPSWAPLVSFTL
                     LILILLLRPGKAGT"
     gene            complement(1850..3061)
                     /locus_tag="VF308_06655"
     CDS             complement(1850..3061)
                     /locus_tag="VF308_06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017524060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7436365.1"
                     /translation="MITFEPLIRRIAAGLCIAAFGAAAAQAQAPSGQPIRIGSTLALT
                     GPLSATAQVHKIVGDLYVEQLNKRGGLLGRPVEWIVKDDQSKPDLARTLYEQLVTSDK
                     VDLLMGPYATGAILSAMGVAQRYNKVLVHHTLGIPALAKYDLQFPAWSLGSDPGVTLP
                     NTVFDALAASAKPPKTVALVTSKFPSIYFMSQGAREVMKKRGLTEVLYLEWDFGNRDF
                     GPIANRVKDAKPDFVWVGAIGLDGNLLLEAMKKIDYVPPMHFYLYPAPGPMVALPEAK
                     NALSVTIFEDHMPFLRNPNAAEFAKAYHERAIKAGLPDPSVEVQSAASYSAWQILEAG
                     VRGAQSLDDKAIGAWLKKNRVDTIQGVLRFDGPNNYGDDLMDVKQVQNGKWVVVWPKD
                     KAAPGATLQGP"
     gene            complement(3135..>3872)
                     /locus_tag="VF308_06660"
     CDS             complement(3135..>3872)
                     /locus_tag="VF308_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013743316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX7436366.1"
                     /translation="FLGLLVNPGNPRVVGPAIADALTGYYAAYGILGALHERHRTGLG
                     RTVEVSMFEAMTHFNLDAFTHFFSAGEVMGPYSRPRVSQSYVLACADGKWIALHLSSP
                     DKFWQGLALAIERPELSDDVRFATRQARIEHQEGLIEVLGPVFAARPRDEWCRRLEAH
                     DVPHAPMYTTAEVPHDPQARHLQLFVETEHPSLGRFRTVRSPVSFDGERALEVTAPPL
                     LGEHDEALRAGWGPRGVADGRCREDVD"
BASE COUNT          693 a         1314 c         1333 g          532 t
ORIGIN      
        1 tggtcgcgat cagcaccgcc cccatcatcg ccttgcccgc gaccgcatag tcggcggccg
       61 tgaacgagta gaggaggatc gtgatgacgg tcgcgccgac cgccggcccg gcccaatggc
      121 gcgtgccgcc gagcacgctc atcagcacga ccgtgagcgg aacggtgatc gagaacacct
      181 cgcccgccgt gacgtacgag atgaagagcg catggatgcc gcccgcgacg cccgcgaggc
      241 ccgaggagac ggcgagcgcg agaagcttgt agcggtacgt cggcacgccc atgacctcgg
      301 cggcaacctc gtcgtcgtgg atcgcgaaca ggcccgcacc gaatttcgag cggctgatgg
      361 cccacgcgat cagcagcgtg ccgacggccg ccgccagcgc gagcagatag aacgtaccgg
      421 cctgcgtcgg accgagcgcg ggcaccgcca cgctgttgag gtagacgccg ggaccgccgt
      481 cgatcggcgt gttgagcacg atcgtgctca acacaaacgt gaccgcgagc gtcagcaggg
      541 cgaacagctc gccgcggacc cgcttgacgc gaaagacgac cgcgcccaga ccgaggccga
      601 gcagtgcggc gacgccggcc gcggccggca gggtccacag gaacggccag ttcgcgcgcg
      661 tggccagggt cgccgtcgtg tagaggccgg cgccgaagaa ggcgccgtgg ccgaacgaga
      721 aatagccggc gtagccggac aggatgttcc aggaggtggc gaggacgatc cagctcagca
      781 ccagatagaa aaacgagtcg tagaacgccg gcaggccgag ccacggcagc gtcgccagga
      841 cggccccggc gagcacgatc gcgaccggca cgcgcttcat gtccccgcct tgcccggacg
      901 cagcagcagg atcaggatca gcagcgtgaa cgagaccagc ggcgcccacg acggcgaggt
      961 cagcgccatc gtcaccgact cgctgatgcc gagcagcaac ccggcgacga gcggccccca
     1021 cgcgctgccg aggcccccga gcatcaccgc ggcgaagacc acgccgatcc aggcgtagat
     1081 ctgcgacggc gcgagcgaga acagcagcgc caggcaaacc ccggcgacac tggcgagtgc
     1141 cgcgcaggtt ccggcgagca cgagcgacag cgcccggacg ttgatgccga acgccgcggc
     1201 gaccggcgcg tcctcggcgg cggcccgcat cgcccgaccg gcgtcggtgt aacgcaggac
     1261 ggaccagacc gcacaggaca gcgcgaccgc gaggaccagc gtgatcagct caggcaccgg
     1321 aacgaacaat tcgccgatgc ggaacttctg ctgcccgtaa ctcgattcga gcttgcggaa
     1381 atcggcggtc cagatcgact ggatcaggct ttcgatgatg ccggtcaggc cgaaggtcag
     1441 cagcagcgag ctgaagggcg tgagcgcaaa acgcgccatc acccagtgca gcgcggcgcc
     1501 gatcgcgaag aacagcggca cgatgagcgc cagcgtcagg agcggatcca tcccgccctt
     1561 gtgcgacagc tggtagcaca ggtacgcggc gaggaacgcg aacgcgaaat gcgcgaggtt
     1621 gatcagccgc aacaggcccc agctgaggcc gagccccagc cccatcaggc cgtagagcgc
     1681 accgacgaag atgccggaca ggatcgactg ggacagcagg ttcaggctgg gccaggcgaa
     1741 gcccgacatt cagcacactc ctctggcgct cgagcgcgca gaggtgcggg ctttgcgcgc
     1801 ctgaacgcca cgagccggct gctcgcccgt acgtccacca cgcttcattt cagggaccct
     1861 gcagcgtggc gccaggcgcc gccttgtcct tcggccagac gacgacccac ttgccgttct
     1921 gcacctgctt gacgtccatc aagtcgtcgc cgtagttgtt cggcccgtcg aagcgcagca
     1981 cgccctggat cgtgtcgacg cggttcttct tgagccaggc gccgatcgcc ttgtcgtcga
     2041 ggctctgcgc gcctctcacg ccggcctcga ggatctgcca agcgctgtac gaggcggcgg
     2101 actgcacttc gaccgacggg tcgggcagcc cggccttgat cgcgcgctcg tggtaggcct
     2161 tcgcgaattc cgccgcgttc gggttgcgca agaacggcat gtggtcctcg aagatcgtca
     2221 ccgagagcgc gttcttcgct tcgggcagcg ccaccatcgg gccgggcgca ggatagaggt
     2281 agaagtgcat cggcggcacg tagtcgatct tcttcatcgc ctcgagcagc aggtttccat
     2341 cgagcccgat cgcgccgacc cagacgaaat cgggcttggc atccttgacg cggttggcga
     2401 tcggaccgaa gtcgcggttg ccgaagtccc actcgaggta gagcacctcg gtcaggccgc
     2461 gcttcttcat cacctcgcgg gcgccctgcg acatgaagta gatcgacggg aacttgctcg
     2521 tcacgagcgc gaccgtcttc ggcggtttcg ccgacgcggc gagcgcgtcg aacaccgtgt
     2581 tcggcaaggt gacgcccggg tcggagccga gcgaccaggc cggaaactgc aggtcgtact
     2641 tggccagcgc cggtatgccc agcgtgtggt gcacgagcac cttgttgtag cgctgggcca
     2701 cgcccatcgc cgacaggatc gcgcccgtcg cgtagggtcc catcaggaga tcgaccttgt
     2761 cggaggtgac gagctgctcg tagagcgtgc gcgccaggtc gggcttggac tggtcgtcct
     2821 tgacgatcca ctcgaccggc cgaccgagca agccgccgcg cttgttcagt tgctcgacat
     2881 agagatcgcc gacgatcttg tgcacctgcg cggtggccga gagcggcccg gtcagcgcga
     2941 gcgtgctgcc gatgcggatc ggctggcccg aaggcgcctg cgcctgcgcg gcagccgcgc
     3001 cgaaggccgc gatgcagagg ccagcggcaa tccgccggat cagcggttcg aaggtgatca
     3061 tgtccgaggt ctcctgtcct aggtcttccg ttgcgactcc gtatgccgca ccttgcggca
     3121 tggcacgcgc cggatcaatc cacgtcttcc cgacatcgcc cgtccgcgac cccgcgcggg
     3181 ccccagcctg cgcgcagcgc ctcgtcgtgc tcgccgagca gcggaggggc ggtgacctcg
     3241 agcgcacgct caccgtcgaa cgagaccggc gagcgcacgg tgcgaaacct gccgagcgac
     3301 ggatgctcgg tttcgacgaa gagctggagg tggcgcgcct gcggatcgtg cggcacctcg
     3361 gccgtcgtgt acatcggggc gtgcggcacg tcgtgcgctt cgaggcggcg gcaccattcg
     3421 tcgcgcggcc gcgcggcgaa gaccgggccg agcacctcga tcaggccttc ctggtgctcg
     3481 atgcgcgcct gccgcgtggc gaagcgaacg tcgtcagaca gctccggacg ctcgatcgcc
     3541 agggccagcc cttgccagaa cttgtccggc gacgacaggt gcaacgcgat ccatttgccg
     3601 tccgcgcagg cgagcacgta cgactgcgag acgcgcggcc ggctgtaagg acccatcact
     3661 tcgccggccg agaagaagtg cgtgaaggca tcgaggttga agtgcgtcat cgcctcgaac
     3721 atcgagacct cgacggtgcg cccgagcccc gtgcgatgcc gctcgtgcag cgcgccgagg
     3781 atgccgtagg ccgcgtagta gccggtgagg gcgtcggcga tggccggccc gacgacgcgc
     3841 ggattgcccg ggttgacgag cagccccaga aa
//
LOCUS       DASVHM010000352         1859 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_817940, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000352 DASVHM010000000
VERSION     DASVHM010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1859
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_817940"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..858)
                     /locus_tag="VF308_06665"
     CDS             complement(<1..858)
                     /locus_tag="VF308_06665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008906535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HEX7436367.1"
                     /translation="MPPPSERSRLALYLDLIRWDRPAGTYLLLWPTLSALWIASGGFP
                     GWHLLIVFTLGTFLMRSAGCAVNDVADREFDRHVKRTASRPVTSGAVSPREALALGAA
                     LAVAAYALVLTTNLAAVAWSVAALAVTVLYPFSKRFFSMPQAVLGVAFSFGIPMAFAA
                     VRGGRSWLTPAAPASPDWSFSAVFASVPAVAWWLLLGNLFWVLAYDTEYAMVDRDDDL
                     RIGIKTSAITLGRYDVAAVMSFYALFIAIWAVIGTRLGLGPAYFAGLGAAALIACWHY
                     TLIRERSREG"
     gene            complement(896..>1859)
                     /locus_tag="VF308_06670"
     CDS             complement(896..>1859)
                     /locus_tag="VF308_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HEX7436368.1"
                     /translation="TQAEGEIELLTDAAPPFDRAAFLSGKQTPMFFGSAVNNFGVREV
                     LDALVDLAPSPGVRPAIQRDVEPDEPRFSGVVFKIQANMDPAHRDRIAFVRVASGHFE
                     RGMRLKVVRSGKELRPNTVVSFLSQRRELLDEAFAGDIIGIPNHGVLQLGDTLTEGEA
                     LQFTGLPFFAPEMFRSVEVADPLRTKQLKAGLTQLGEEGAIQVFRPVAGSLLLLGAVG
                     QLQFEVVAHRLEHEYGVKARILPSRFQVARWVTCDPQDGGAKELQRFIDANAHRVAYD
                     AVDAPTVLVEYAPELRAIESNWPKIKFHALREHAGLVFQKRLEG"
BASE COUNT          311 a          598 c          672 g          278 t
ORIGIN      
        1 gccttcgcgt gatcgttcgc ggatcagcgt gtagtgccag cacgcgatca gcgcggccgc
       61 gccgagcccg gcgaaatacg ccgggccgag gccgagtcgc gtgccgatga cggcccagat
      121 cgcgatgaag agcgcgtaga acgacatcac cgccgcgacg tcgtagcggc cgagcgtgat
      181 ggccgaggtt ttgatgccga tcctcaggtc gtcgtcgcgg tcgaccatcg cgtattcggt
      241 gtcgtaggcg aggacccaga acagattgcc gagcagcagc caccaggcga ctgccggtac
      301 cgatgcgaac acggccgaaa acgaccagtc ggggctcgcg ggcgcggccg gggtgagcca
      361 tgatctgccg ccgcggactg cggcgaaggc catcgggatg ccgaagctga aggcgacgcc
      421 gagcacggct tgcggcatcg agaagaagcg cttgctgaac ggatacagca cggtgacggc
      481 cagcgcggca acgctccacg cgacggccgc gaggttcgtc gtcaacacca gtgcgtacgc
      541 cgcgacggcg agcgccgcgc cgagggcgag cgcctcgcgc gggctcaccg cgccgctcgt
      601 caccgggcgg ctggcggttc gcttcacgtg ccggtcgaat tcacggtcgg cgacgtcgtt
      661 gacggcacag cccgcgctgc gcatcaggaa agtgccgagc gtgaagacga tgaggaggtg
      721 ccagcccggg aacccgccgc tggcgatcca gagcgccgac agggtcggcc agagcagcag
      781 gtaggtgccg gccgggcggt cccagcggat caggtcgagg tagagcgcaa ggcgcgatcg
      841 ctcggaaggc ggtggcatgc cccgattgtc gtcgcgggtg gccgtgtgcc cggcgtcagc
      901 cttcgagccg cttctggaac acgaggccgg cgtgctcgcg cagcgcatgg aacttgatct
      961 tcggccagtt gctttcgatc gcacgcagct ccggcgcgta ttcgaccagc accgtggggg
     1021 catcgaccgc gtcgtaggcg acgcgatgcg cattggcgtc gatgaagcgc tgcagttcct
     1081 tcgcgccgcc gtcctgcggg tcgcacgtga cccagcgcgc cacctggaag cggctcggca
     1141 ggatgcgcgc cttcacgccg tactcgtgtt cgaggcggtg ggcgaccacc tcgaactgga
     1201 gctggccgac ggcgccgagc aggagcaagg aaccggcgac cgggcgaaag acctggatcg
     1261 caccttcttc tcccaattgc gtcagtccgg ccttcagttg cttggtgcgc agcgggtcgg
     1321 cgacctcgac gctgcgaaac atctccgggg cgaagaacgg cagcccggtg aattgcagcg
     1381 cttcgccctc ggtgagcgtg tcgccgagtt gcagcacgcc gtgattcggg atgccgatga
     1441 tgtcgccggc aaacgcttcg tcgaggagtt cgcgccgttg cgacaggaag ctcacgaccg
     1501 tgttcggccg gagctccttg ccggagcgca cgactttcag gcgcatgccg cgttcgaagt
     1561 ggcccgaggc gacgcgcacg aacgcgatcc ggtcgcggtg cgccgggtcc atgttggcct
     1621 ggatcttgaa caccacgccg ctgaacctcg gttcgtcggg ttcgacgtcg cgctggatcg
     1681 ccggacgaac gccgggcgaa ggagccaggt cgacgagcgc atcgaggact tcgcgcacgc
     1741 cgaagttgtt gaccgccgag ccgaagaaca tcggcgtctg ctttcccgaa aggaaagcgg
     1801 cgcggtcgaa cggcggtgcg gcgtcggtga gcagctcgat ctcgccttcg gcctgcgtg
//
LOCUS       DASVHM010000353         5503 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_892764, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000353 DASVHM010000000
VERSION     DASVHM010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5503
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_892764"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1170
                     /locus_tag="VF308_06675"
     CDS             <1..1170
                     /locus_tag="VF308_06675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX7436369.1"
                     /translation="GAEAFEPGRNVAVTPGRVVLRNRIMELIQYTPTTPKVNAEPVLI
                     VPAWIMKYYVLDLSPGNSLIRHLVDHGFTVFAISWKNPTEADRNLGMNDYAEHGVRAA
                     LQAIAHIVPGAGIHATGYCLGGTLLSIAAAALGRDGASPLRTLTLLAAQTDFTAPGEL
                     GLFIDEAQVAFLEQLMAQRGYLDKKQMQSTFQMLRSGDLIWSYRLHSHLLGERRPVND
                     LMAWNADGTRLPERMHSEYLRGMFLDNALARGEWRVRGQPVNLSDIRVPIFNVGTVQD
                     HVAPWRSVYRLNALTDAEQTFVLTAGGHNVGIVNPPGQVKSSYRLRTWHAGDRLLTPD
                     EWIAATSPVADSWWTPWLEWLREHSTGRVAPPSMGAVADGLPALEAAPGLYVHQR"
     gene            complement(1152..2747)
                     /locus_tag="VF308_06680"
     CDS             complement(1152..2747)
                     /locus_tag="VF308_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX7436370.1"
                     /translation="MADDLLLLAEARDRVSALRETLEANDGSPVRLIETHVSWVLLTH
                     RLAYKFKKPVRLPFLDLTRLAERRRCCDEELRLNRRFAPDLYLDVIEVREGPQGPCLG
                     GSGPLVDVAVRMRRFPDGALWSERVGAGTLLPAQVDSFAGRLAALHREAPVAPPDSSF
                     GSSTVHRGLVNGLVGAIDSWQASLPAPHPGWPRVRRWLDEELDRLESHWLARLRDGRV
                     RECHGDLHLGNVLQAGDEAIAFDALEFAVELRWIDPLDDLAFLVMDLHANGRHDLALR
                     LLNAYLEASGDYDGLPALRFFLVTRALVRAQVCTLLPSRGDAGGATPSAATAYLELAC
                     EIARTADRRLAITHGLPGSGKTFVAKAIAEEVGAIRVRSDVERKRLFGLSSLQSSQAR
                     NDGAIYDASATERTYARLLAVARTALLADWPTIVDAAFLRRAERTGFRALAAALDAPF
                     TILDCRTEPALLRQRIAARQVRGDDASEADLDVLKRLAPLDEPLDDGEAALAIVCDAE
                     SSQQPATLGRRWREVGPLQRWWT"
     gene            2845..3078
                     /locus_tag="VF308_06685"
     CDS             2845..3078
                     /locus_tag="VF308_06685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436371.1"
                     /translation="MTHSTPNRPPRSPSSTVPSPASLVSFDSLTSLDNPFLEAQRAQW
                     EALVSWQQSLAAFNNDLWEQWAMHYAGGMPIDG"
     gene            3117..4472
                     /locus_tag="VF308_06690"
     CDS             3117..4472
                     /locus_tag="VF308_06690"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7436372.1"
                     /translation="MRLTFLGATGTVTGSKYLLEHGGRRVLVDCGLFQGLKQLRLRNW
                     ESPALPCAQIDAAVLSHAHLDHSGYLPKLVQLGFRGAVHCTPPTHDLCGLLLPDSARL
                     LEEEAQYANRHDWSKHHPALPLYTEADAVAALKRFRQVDFEQAFDPVPGVRIRLRRAG
                     HLLGAASIHVEWDGGSLLFSGDLGRGADLLMPPPSLPEAAEVVVMESTYGDRLHPVDD
                     PLTTIAEVVNRTAARGGVIIVPSFAIGRAQALLYGLHLLKEQRRIPDLPIFLNSPMAA
                     DATRIYHAHHAEHRLTPEQCEAMCTTAKIVNSVEESMRLNNLRMPSVIVSASGMASGG
                     RVLHHLKAYAPDPRNSVLFVGYQAMGTRGAAMVGGAASVKIHGQQVPIRAEVVNVPGF
                     SAHADREELLAWVGALPNAPERVYLTHGEPVAADSLRQAIEERHGWQCSVPEYRDAVE
                     L"
     gene            4601..5125
                     /locus_tag="VF308_06695"
     CDS             4601..5125
                     /locus_tag="VF308_06695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011463237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX7436373.1"
                     /translation="MYKRILVPIDGSPTSDRGLEEAIVIARMTGGSIRLLHVLDELVF
                     ASGFETGATYMTTVLPALRQRSERILAAGRERVAAAAVAVETQPVECFARRPSDVIVE
                     QATQWPADLIVLGTHGRRGVNRLMLGSDAEQVLRMAPVPVLLVRLSEIAGGVAAGSTT
                     AAASGVAKVSAAPA"
     gene            complement(5168..>5503)
                     /locus_tag="VF308_06700"
     CDS             complement(5168..>5503)
                     /locus_tag="VF308_06700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylacetate--CoA ligase family protein"
                     /protein_id="HEX7436374.1"
                     /translation="IEVNGRCDDTLHLGTETTRRVHVVPLALTTVLEEGAGLFDFQLV
                     QDGPRELSLSTAGHGKAACASLQRGRSVLGEFLREQGAGAIRIRCLSGRPPRLGRSGK
                     LQRVVGWCE"
BASE COUNT          874 a         1951 c         1852 g          826 t
ORIGIN      
        1 ggcgccgagg ccttcgagcc cggacgcaac gtcgccgtca cgccgggacg cgtggtcctg
       61 cgcaaccgga tcatggagct gatccagtac accccgacga cgcccaaggt gaacgccgag
      121 cccgtgctga tcgtgccggc ctggatcatg aagtactacg tgctcgatct gtcgccgggc
      181 aactcgctga tccggcatct cgtcgatcac ggcttcaccg tgttcgcgat ctcctggaag
      241 aacccgaccg aagccgatcg caacctgggc atgaacgact acgcggagca cggcgttcgc
      301 gccgcgctcc aggccatcgc gcacatcgtt cccggtgccg gcatccatgc caccggctac
      361 tgcctcggcg gcacgctgct ctcgatcgcg gccgctgcgc tgggccgcga cggcgcgtcc
      421 ccgctgcgca cgctcacgct cctggcggcg cagaccgact tcaccgcgcc gggcgagctg
      481 ggattgttca tcgacgaagc ccaggtcgca ttcctcgagc agctgatggc gcagcgcggc
      541 tacctcgaca agaagcagat gcagagcacg ttccagatgc tgcgctcggg cgacctgatc
      601 tggtcgtatc gcctgcacag ccatcttctc ggcgagcggc ggccggtcaa cgacctgatg
      661 gcctggaacg ccgacggcac gcgtcttccc gagcgcatgc actccgaata cctgcgcggc
      721 atgtttctcg acaacgcgct ggcgcgcggc gagtggcgtg tccgcggaca gccggtgaat
      781 ctgagcgaca tccgcgttcc catcttcaac gtcggcacgg tccaggatca tgtcgcgccc
      841 tggcgctcgg tctacaggct gaacgcgctc accgacgccg agcagacctt cgtgttgacg
      901 gccggcggcc acaacgtcgg catcgtcaat cctcccggcc aggtgaaatc gagctatcgg
      961 ttgcgcacct ggcacgccgg cgaccgcctg ctgacgccgg acgagtggat cgccgcaacg
     1021 tcgccggtcg ccgattcgtg gtggacgccc tggctcgagt ggttgcgcga gcactccacc
     1081 ggtcgtgtcg cgccgccgtc gatgggcgcg gtcgccgacg gcctgccagc gctggaggcc
     1141 gcacccggcc tctatgtcca ccaacgctga agcgggccga cttctcgcca gcggcggccg
     1201 agggttgcgg gttgctgcga cgattcggca tcgcagacga tcgccagcgc ggcctcgccg
     1261 tcgtcgaggg gttcgtcgag cggcgccagc cgcttcagca cgtcgaggtc ggcttcggag
     1321 gcatcgtcgc cgcgcacctg acgcgcggcg atgcgttggc gcaggagcgc cggctcggtg
     1381 cgacagtcga ggatcgtgaa cggtgcgtcc agggcggcgg ccagggccct gaagcctgtt
     1441 cgttcggcgc ggcggaggaa cgcggcgtcg acgatcgtcg gccaatcggc caagagcgcg
     1501 gttcgggcga cggcgagcaa gcgagcgtag gttcgttccg tggccgaggc gtcgtagatc
     1561 gcaccgtcgt tgcgcgcctg cgaggactgc agcgacgaca ggccgaacag gcgcttgcgt
     1621 tccacgtcgg agcgaacccg tatcgccccg acctcctcgg cgatcgcctt tgcgacgaaa
     1681 gtctttccgg accccggcag cccgtgcgtg atcgccagtc tgcgatcggc ggtgcgggcg
     1741 atctcgcacg cgagttcgag gtaggcggtc gcggcactcg gcgtggcacc gcccgcatcg
     1801 cctcgagaag gaaggagcgt gcagacctgc gcgcgaacca gcgcccgcgt gacgaggaag
     1861 aagcgaagcg ccggcaagcc gtcgtagtcc ccgctcgcct cgagataggc attgagcagt
     1921 cgcaacgcca ggtcgtgtcg accgttggcg tgcaggtcca tgaccaggaa cgccaggtcg
     1981 tcgagcggat cgatccagcg cagctcgacc gcgaattcga gcgcgtcgaa agcgatcgcc
     2041 tcgtcgccgg cctgcagcac gttgcccagg tgcaggtcgc cgtggcactc gcgaacgcga
     2101 ccgtcgcgca ggcgcgccag ccagtgcgac tcgaggcggt cgagctcttc gtcgagccac
     2161 cgccgcacgc gaggccaacc gggatgaggc gccggcaggc tcgcttgcca cgagtcgatc
     2221 gcgccgacaa ggccgttcac gaggccgcgg tgaaccgtcg acgagccgaa gctgctgtcg
     2281 ggcggcgcga ccggtgcctc gcggtgcagc gcggcaaggc gaccagcgaa ggaatcgact
     2341 tgcgcgggca ggagcgtgcc ggcgccgacg cgctcgctcc acagcgcgcc gtcggggaac
     2401 cggcgcatcc gcaccgcgac atcgaccaag ggaccgctgc ctccgaggca cgggccttgc
     2461 ggcccttcgc gcacttcgat cacgtcgagg tacaggtcgg gcgcgaagcg ccggttgagg
     2521 cgcagctctt cgtcgcaaca acggcgccgc tcggccagcc tcgtgaggtc gagaaagggc
     2581 aaacggaccg gcttcttgaa cttgtatgcc aagcggtggg tcaacagcac ccacgagaca
     2641 tgggtctcga tcaggcggac cggcgagccg tcgttggctt cgagggtttc gcgcaaggcc
     2701 gagacgcggt cgcgggcttc ggccagcagg aggagatcgt cagccatgcg ccatcttcga
     2761 agcgacgctc ggcagcggat tgacctgtgt caaggtgact gggagcccca ggcctagatt
     2821 ggaagccgct cttggagaaa cgtcatgacc cattcgaccc ccaaccggcc accgcggtcg
     2881 ccgagctcga cggtcccgtc gcccgccagc ctcgtttcgt tcgacagcct cacttcgctc
     2941 gacaacccct tcctggaggc gcagcgcgcc caatgggagg cccttgtttc ctggcagcaa
     3001 tcgctcgccg cattcaacaa cgacctctgg gagcaatggg ccatgcacta tgccggaggc
     3061 atgccgatcg atgggtgaaa ccggcgccat gcgatccgat tcgaccggcg ccgatcgtgc
     3121 ggctgacatt cctcggcgcg actggcaccg tcaccggatc caagtacctg ctcgagcacg
     3181 gcggacggcg cgtgctggtc gattgcgggc tcttccaggg gctgaagcag ctgcggctgc
     3241 gcaactggga aagcccggcg ctgccgtgcg cgcagatcga cgcggccgtg ctcagccacg
     3301 cccacctcga ccacagcggc tacctgccga agctcgtcca gctcggcttt cgcggcgccg
     3361 tccattgcac gccgccgacg catgacctgt gcgggttgct gcttcccgat tcggcccgcc
     3421 tgctcgagga agaggcgcaa tacgcgaacc gccacgactg gtcgaagcac cacccggcgt
     3481 tgccgctcta caccgaggcc gacgccgtcg ccgcgctgaa gcggttccgc caagtcgact
     3541 tcgagcaggc gttcgatccg gttcccggcg tgcggatccg gcttcgtcgt gccggccacc
     3601 tgctcggcgc ggccagcatc cacgtcgaat gggacggggg ctcgctcctt ttctcgggcg
     3661 acctcggcag gggtgcggat ctgctgatgc cgccgccttc cctccccgag gcggcggagg
     3721 tcgtggtgat ggaatcgact tacggcgacc gccttcatcc cgtcgacgac ccgctcacga
     3781 ccatcgccga agtcgtcaat cgcacggccg cccgaggcgg ggtgatcatc gtcccgtcgt
     3841 tcgcgatcgg ccgcgcacag gcgcttctct acggcctgca ccttctcaag gagcaacgcc
     3901 gcatcccgga cctgccgatc ttcctcaaca gcccgatggc ggccgacgcc acccgcatct
     3961 accacgcgca ccacgccgag caccgtctca cgcccgagca gtgcgaggcg atgtgcacga
     4021 cggcgaagat cgtcaacagc gtcgaagaat ccatgcgcct gaacaacctg cgaatgccgt
     4081 cggtcatcgt gtcggcgagc ggcatggcgt cgggcgggcg cgtcctgcac cacctgaagg
     4141 cctacgcgcc cgaccctcgc aacagcgttc tcttcgtcgg ctaccaggcg atgggaacgc
     4201 gcggggcggc gatggtcggc ggcgctgcca gcgtgaaaat ccatgggcag caggtgccga
     4261 ttcgcgccga ggtcgtcaac gtgccgggct tttcggcgca cgcggatcgt gaagagctgc
     4321 tcgcctgggt cggcgcgctg ccgaacgcgc ccgagcgggt ctatctcacg cacggcgagc
     4381 cggtcgccgc ggactcgctg cgccaggcca tcgaagagcg acacggctgg caatgcagcg
     4441 tgcccgaata ccgcgacgcg gtcgagctgt gaggtctcgg acgctgctga cgcccacccg
     4501 gcccgcggcg cgtcaacggc gtgccgattg acggcgatca agcggcaaga ctgcccgcaa
     4561 gcacacactg catccggacg gttcatcctg aggatatggc atgtacaagc gcatcctggt
     4621 tccgatcgac ggcagcccca cctccgaccg ggggctcgag gaagcgatcg tcatcgcgcg
     4681 aatgaccggc ggaagcatcc gcctcctcca cgtcctcgat gagctggtct tcgcgagcgg
     4741 cttcgagacc ggcgcgacct acatgaccac cgtcctgccg gcgctgcgcc aacgcagcga
     4801 gcgcatcctg gcggcgggtc gcgagcgcgt tgccgcggcc gccgttgcgg tcgagacgca
     4861 acccgtcgag tgcttcgcgc gccggccctc ggacgtcatc gtcgagcagg cgacccagtg
     4921 gcccgccgac ctcatcgtcc tcggcaccca tggccggcgc ggcgtcaatc gcctgatgct
     4981 cggcagcgac gccgagcagg ttctgcgcat ggcgccggtc ccggttctgc tcgtgcgctt
     5041 gagcgagatc gccggtggcg tcgcggcagg cagcaccacg gcggccgcat ccggcgtcgc
     5101 caaggtcagc gcagccccgg cctgaggccg gatcacgacc gccggccggc gcttgcccgg
     5161 cgcctgctca ctcgcaccat ccgaccactc gctgcagctt tccggagcgc cccaagcgcg
     5221 gcggacgccc gctcaggcat cggatccgaa tcgcgccggc gccctgttcg cgcaggaact
     5281 cgccgaggac cgaacggcct cgctgcaagg acgcgcaggc cgccttgcca tggcctgcgg
     5341 tgctgagcga cagctcgcgg ggcccgtcct ggaccagctg gaagtcgaac agcccggcac
     5401 cctcctcgag caccgtggtc agcgcgagcg gcacgacatg gacccggcgc gtcgtctccg
     5461 tgcccaggtg cagggtgtcg tcgcagcgac cgttgacttc gat
//
LOCUS       DASVHM010000354         2579 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_747400, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000354 DASVHM010000000
VERSION     DASVHM010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_747400"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            66..749
                     /locus_tag="VF308_06705"
     CDS             66..749
                     /locus_tag="VF308_06705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436375.1"
                     /translation="MLAALALLVVAAGVAVWQFGGRGGAGVVAGPPASAALARIGSAA
                     SALANAPPVAATALPAPASAVAPPVPTPTVATATVAPAASAPGRVATAAGASASAAPR
                     VVVAVAASAPSGAASRPKPGTKGKPGETGAPGTTTADRLQDAALNYPAADAHPRPSAA
                     REPTPAPPPRPVVVAEPTGPSSAREVCGGRVFIALAVCMDRECEQPRFRNTAECIPIL
                     EMKHKRENN"
     gene            858..2570
                     /locus_tag="VF308_06710"
     CDS             858..2570
                     /locus_tag="VF308_06710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020204593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEX7436376.1"
                     /translation="MFPNPDYDVPADRPHFAIWPKRLPRAVIAPETSLWVNLDVSALR
                     FPEKPAYIFFGRELGYRELRAQAEAIAGWLQSVGVAAGDRVAIFMQNCPQFVAAYYGI
                     LRANAVVVPVNPMNRTEEFKHYITDPGTRVVICSADLAGIVEAANAAVAPEQRLARVL
                     VTRYTDAMPEGALDPDDAAPAAMDAWLRADPPLPSGHVRWTDALALGLIPGPHTARPD
                     DLAMLPYTSGTTGLPKGCMHTHRTLMHNTVGGQWSYAAPESIGLGVVPMFHITGMLYG
                     VLGIVHSGATHVLMPRWDRELAGRLISRYHITHWTCIPTMMIDLFASPNYKSFDLSSL
                     RYISGGGAAMPHAVAQRLQDEFGLTFAEGYGLTETAAPSHANPPERAKLQCLGIPIFG
                     VDSRVVDPLTLKELPVGEVGEIITRGPMVFKGYWRHPGATQDAFVEFEGRSFFRTGDL
                     GRMDEEGYFFLTDRLKRMINASGFKVWPAEVEMLLYRHPAVQEACIIAARDAYRGETV
                     KAVVVLRAEARGKTCAEDITAWARENMAAYKVPKIVEFVETLPKSGSGKVMWRLLQDQ
                     EATR"
BASE COUNT          387 a          924 c          886 g          382 t
ORIGIN      
        1 tcgcgccgcc cgcgtcgatg gtggtgccgg cgtcgggggc ggcatcgtca tcgaaactcg
       61 gcgtcgtgct cgcggcgctg gcgctgctgg tcgtcgctgc cggcgttgct gtctggcagt
      121 tcggcggccg gggcggtgcc ggtgtcgtcg cgggtccgcc cgcgagcgcg gccctcgccc
      181 ggatcgggtc ggcggcctcg gcgctggcca atgcgccgcc ggtggctgcc accgcgctgc
      241 ccgcgccggc ctctgctgtc gcgccgccgg tgcccacacc caccgtcgcc acggcgactg
      301 tggcgccggc cgcttcggct ccgggacggg tcgccaccgc ggccggcgcg agcgcttctg
      361 ctgcgccaag ggtggtggtc gccgtggcag cgtccgcgcc ctcgggcgcg gcgagtcgac
      421 cgaagccggg cacgaagggc aaaccgggcg agaccggcgc gccggggacg acgaccgcgg
      481 atcggctgca ggatgcagcc ttgaactatc ccgccgccga cgcgcatccg cggccatcgg
      541 cggcgcgcga accgacgccg gcgccgccac cgcgtcccgt cgtcgttgcc gaaccgacgg
      601 gcccgtcgag tgcgcgcgag gtgtgcggtg gccgggtctt catcgcgctg gctgtctgca
      661 tggaccgcga gtgcgagcag ccgcgctttc gcaacaccgc ggagtgcatc ccgatcctgg
      721 aaatgaagca caagcgcgaa aacaactgag ccgaggggcg ccggcgtggc gccgactgcg
      781 cgaagcgtcc accggcatgg cgcctcaccc gtcggcgaga atccaggcga tccacccatc
      841 accgtctcgg agcgtccgtg tttccaaacc ccgactacga cgtcccggcc gatcggcctc
      901 acttcgcgat ctggcccaag cggctgccgc gcgcggtgat cgcgccggaa acctcgctct
      961 gggtcaacct cgacgtttcc gcgctgcgct ttccggaaaa gcccgcctac atcttcttcg
     1021 gccgcgaact cggctatcgc gagttgcgcg cccaagcgga ggcgatcgcc ggctggctcc
     1081 aaagcgtcgg tgtcgcggcc ggcgaccgtg tcgcgatctt catgcagaac tgcccgcagt
     1141 tcgtggcggc gtactacggc atcctgcgcg cgaatgcggt cgtggtgccg gtcaacccga
     1201 tgaaccggac cgaggagttc aagcactaca tcaccgaccc cggcacccgc gtcgtgatct
     1261 gcagtgccga cctggccggg atcgtcgagg ccgcgaacgc ggccgtcgcg cccgagcagc
     1321 ggctcgcgcg ggtgctggtc acgcgctaca ccgatgcaat gcccgaaggc gcgctcgacc
     1381 cggacgacgc cgcccctgcc gcgatggacg catggctgcg cgccgacccg ccgctgccct
     1441 cgggccacgt gcgctggacc gatgcgctcg cgctcggtct gatcccgggg ccacacaccg
     1501 ccaggcccga cgacctggcg atgctgccct acacctcggg caccacgggt ctgcccaaag
     1561 gctgcatgca cactcaccgc acgctgatgc acaacacggt cggcggccag tggagctatg
     1621 ccgcgcccga atcgatcggc ctgggcgtgg tgccgatgtt ccatatcacc ggcatgctct
     1681 acggcgtgct cggcatcgtc cacagcgggg ccacgcacgt gttgatgccg cgctgggacc
     1741 gcgaactcgc cggacgcctg atctcgcgct atcacatcac ccactggacc tgcattccga
     1801 cgatgatgat cgacctcttc gcgagcccca actacaagag tttcgacctg tcgagcctgc
     1861 gctacatcag cggcggcggg gcggccatgc cgcacgcggt ggcgcagcgc ctgcaggatg
     1921 aattcggcct gaccttcgcc gagggctacg gcctgaccga gaccgccgcg ccgagccatg
     1981 ccaacccgcc cgaacgcgcc aagctgcagt gcctgggcat cccgatcttc ggcgtcgatt
     2041 cgcgcgtcgt cgatccgctg acgctcaagg agctgcccgt cggcgaagtc ggcgaaatca
     2101 tcacgcgcgg gccgatggta ttcaagggct actggcgcca ccccggggcc acgcaggacg
     2161 cgttcgtcga attcgagggc cgcagcttct ttcgcaccgg tgacctcggc cgcatggacg
     2221 aggagggtta tttcttcctg accgacaggc tcaagcggat gatcaatgca agcggcttca
     2281 aggtctggcc ggcggaagtc gagatgctgc tctacaggca cccggcggtg caggaggcct
     2341 gcatcatcgc ggcgcgcgac gcctatcgcg gcgagacggt caaggcggtc gtggtgctgc
     2401 gcgccgaggc caggggcaag acctgcgccg aggacatcac cgcgtgggcg cgcgagaaca
     2461 tggctgccta caaggtgccg aagatcgtcg aattcgtcga gacgctgccg aaatcgggtt
     2521 ccggcaaggt gatgtggcgc ctgctccagg accaggaagc gacgcgttga gccgccaga
//
LOCUS       DASVHM010000355         3039 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_818113, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000355 DASVHM010000000
VERSION     DASVHM010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3039
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_818113"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..102
                     /locus_tag="VF308_06715"
     CDS             <1..102
                     /locus_tag="VF308_06715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008116250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 family protein"
                     /protein_id="HEX7436377.1"
                     /translation="VAGIYGGVTASRKIIFVQALPAAVALALVLAVS"
     gene            142..987
                     /locus_tag="VF308_06720"
     CDS             142..987
                     /locus_tag="VF308_06720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019426226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MTAP family purine nucleoside phosphorylase"
                     /protein_id="HEX7436378.1"
                     /translation="MLAIIGGTGIYGLDAMTIEDHVDPSTPFGHASGAIAKGRLGGRT
                     VLFMARHGAGHRLLPHEVNYRANIYALKRAGATQVLGFSAVGSLAERLAPGDLAVPSQ
                     YFDWTKGGRERSFFGNGVAAHVSTAQPVSANMVDWIARTARSGGVTLHRDVTYACVEG
                     PRLGTRAESLFLQGAGCDLVGMTNVPEVFLAREAQLCYATIGIVTDYDCWMEDPSRHV
                     TVSAIFERYRESLAKATALLEALVAVEPPAEEPEIRTSLRHAILTPDESLTPAQRAWL
                     EVLRR"
     gene            1174..2073
                     /locus_tag="VF308_06725"
     CDS             1174..2073
                     /locus_tag="VF308_06725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436379.1"
                     /translation="MFDLRVGHGTQAALRDDARGLEIGAGQQQGEFLAAIARDEFALA
                     LDGLADEARHRAQPFVAGGVAVAVVVVLEMVDVDHQQRHGLALARGARPLGVQRLVEE
                     APVADLCQPVDGRELRQALVEALQFELDALAFGDVHVRAHHAQRPAVGCALDDLAAAQ
                     QPGPVAGLLADPEFRLVGHALLLEMGLQRHCDALGVLRVKQGPPSRTLVADLSTVVAE
                     LEAGQLVLVEPVAGDVPIPEAELGATQREFEPLGGALPFLFGRSSEPVELAPLPLAAV
                     ETERAREQQHREKPAEFGRVSAP"
     gene            2320..2913
                     /locus_tag="VF308_06730"
     CDS             2320..2913
                     /locus_tag="VF308_06730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436380.1"
                     /translation="MRERDGHVARVEHRAHHDVEVAGIECGDDDTLELALRTGQHAAD
                     DDHESAADRFEGRRDIERVAVPRPVRDREVFALAEVAPDEHALSRRDDRAARVEQEHV
                     GDARDRVAEDRESLRGAARALAGRACIVGADARQGLVDAVELVTEVFVDDAGLPGEPV
                     ALDRADPGVVLLQFVADQGRSDRQCQQQREPFGPVAF"
BASE COUNT          447 a         1068 c         1042 g          482 t
ORIGIN      
        1 gtcgccggca tctacggcgg cgtgacggcg agccgcaaga tcatcttcgt gcaggcgctg
       61 ccggcggccg tcgcgcttgc gctggtgctc gcggtgtcgt gagccggcgg cctgcgcgcc
      121 gcttcgaaga acggagtgac gatgcttgcg atcatcggcg gtaccggcat ctacggcctc
      181 gacgcgatga cgatcgagga tcacgtcgat ccgtcgacgc cgttcggcca cgcttcgggc
      241 gccattgcga aagggcggct cggcggccgc accgtcctct tcatggcgcg ccacggcgcc
      301 ggtcaccgcc tcctgccgca cgaggtcaac taccgcgcca acatctatgc cctcaagcgc
      361 gccggcgcga ctcaggtgct cggcttttcg gcggtcggaa gcctggccga gcgcctcgca
      421 cccggggacc tcgcggtgcc gagccagtat ttcgactgga ccaagggcgg ccgcgaacgc
      481 agcttcttcg gcaatggcgt cgccgcccac gtgtcgaccg cgcaaccggt cagcgccaac
      541 atggtcgact ggattgcccg cactgcgcgc tccggcggcg tgacgctgca ccgcgacgtg
      601 acctacgcct gcgtcgaagg gccgcgcctg ggcacgcgcg ccgaaagcct cttcctgcag
      661 ggcgccggct gcgatctcgt cggcatgacg aacgtgcccg aggtgtttct cgcccgcgag
      721 gcgcagctct gctatgcgac gatcggcatc gtcaccgact acgactgctg gatggaggac
      781 ccgtcccgcc atgtcaccgt gagcgcgatc ttcgagcgct accgcgagag cctggccaag
      841 gccaccgcgc tgctcgaggc gctcgtcgcc gtggagccgc cggccgaaga gcccgagatc
      901 cgcacgtcgc tgcgccatgc gatactgacc cccgacgaaa gtctcacgcc cgcgcagcgc
      961 gcctggctcg aggtgctgcg gcgctgacga accgcgtcgg ccgcacgcgc cgcaaacgcc
     1021 ccatgactcg tagcgcccgc ggccggcgcg cttggcgcga tacagcgccg catcggccgc
     1081 gtcgacgagc accgacggct tgatgccggc gcccgccgtc gcgctcgcca cgccgatgct
     1141 catcgtgacc caggccgatg tcgacgacgc catgtgttcg atcttcgcgt cggccacggc
     1201 actcaggcag cgctgcgcga cgacgcgcgc ggcctcgaga tcggcgccgg gcagcagcag
     1261 ggcgaattcc tcgccgccat agcgcgcgac gagttcgccc tcgcgcttga cggtctcgct
     1321 gatgaggcgc gccaccgtgc gcagccattc gtcgccggcg gggtggccgt agcagtcgtt
     1381 gtagtccttg aaatggtcga tgtcgatcat cagcagcgcc acggtctcgc gcttgcgcgc
     1441 ggcgcgcgac cactcggcgt tcagcgtctg gtcgaagagg cgccggttgc cgacctctgt
     1501 cagcccgtgg atggtcgaga gctgcgtcag gcgctcgttg aggcgctgca gttcgagctc
     1561 gatgcgcttg cgttcggtga tgtccatgtg cgtgcccacc atgcgcagcg gccggccgtc
     1621 ggctgcgcgc tcgacgacct tgccgcggct cagcaaccag gcccagtggc cggacttttg
     1681 gcggatccgg aattccgact cgtaggccac gctctcctgc tggaaatggg cctgcagcgc
     1741 cattgcgacg cgctcggcgt cctccgggtg aaacagggcc cgccaagccg caccctcgtg
     1801 gccgatctct ccactgtcgt agccgagctg gaggcgggtc aactcgttct ggttgaaccg
     1861 gtcgcgggcg acgtcccaat cccagaggcc gaactcggcg ccacgcagcg cgagttcgag
     1921 ccgctcggcg gcgcgctgcc gttcctcttc ggccgcagct ccgagccggt cgaactggcg
     1981 ccgctgccat tggctgcggt agagaccgag cgtgctcgtg agcagcagca ccgcgaaaaa
     2041 cccgccgagt tcggtcgcgt gtctgcgcca tgactcgtac accgcagatt cgccccggct
     2101 caccgcgatc acgagcggct tgtccatgtc cagttcggcc ggcgcgaccg cgcgcagcgc
     2161 aaggatgcga tcctgcgcag cggctccgac cgacgcggtg accaggcgca ccgaggcagc
     2221 gcccttgtac ggcccggtgg gtcgcagggt ggcgtcgaac ctgccgggct cccaggcccc
     2281 ggtctcgcgc ggcatgccga cgaagacctt gccatcggca tgcgcgagcg cgacggacat
     2341 gtcgctcgcg tagagcaccg agcgcatcac gacgtcgaag tagccggcat cgagtgcggc
     2401 gacgacgaca ccctcgaact cgcccttcgg accggtcagc acgcggccga cgacgatcac
     2461 gaaagtgccg cggatcgttt tgaagggcgg cgagacatag agcgtgtcgc cgtcccgcgc
     2521 ccggttcggg accgagaagt attcgcgctc gcggaagttg cgcccgatga gcacgctctc
     2581 tctcgacgcg acgaccgtgc cgcgcgggtc gagcaggaac atgttggcga cgccagggat
     2641 cgcgtcgctg aggatcgtga gtcgctccga ggtgctgccc gagcgctcgc tggacgggcg
     2701 tgcatagtcg gcgcggatgc tcgccagggc cttgttgatg ccgtcgagtt ggtgaccgag
     2761 gttttcgtcg acgacgcggg cctgcccggc gagccggtcg cgctcgatcg cgccgatccg
     2821 ggtgtagtcc tgctccagtt cgtagccgat cagggccgca gcgatcgcca atgccagcag
     2881 cagcgcgagc cattcgggcc cgtagcgttt tgaggtggtc ggaggggccg gtttcatcga
     2941 cagtcacggc ccgccgacgt gcagcgctcg tgatcgtctt tcggcctcgc gcggccgaaa
     3001 tgaagtcgcg cgtcgatccg actcgtaaag caaggcgcg
//
LOCUS       DASVHM010000356         8693 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_964997, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000356 DASVHM010000000
VERSION     DASVHM010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 8693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8693
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_964997"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..514
                     /locus_tag="VF308_06735"
     CDS             <1..514
                     /locus_tag="VF308_06735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lysine decarboxylase"
                     /protein_id="HEX7436381.1"
                     /translation="NTLLTALQQFKDDYDRNQPLWRILPEFCSAHPRYERMGLRDLAQ
                     SIHETYAKDDIARLTTEMYLSDLQPAMKPSDAFAHIAHRKTERVPIDDLEGRITTSLL
                     TPYPPGIPLLIPGERFNRKIVEYLRFTRAFNAALPGFDTDVHGLVSTTETQGVTIEDG
                     RYFVDCVRAE"
     gene            complement(699..1481)
                     /gene="fabI"
                     /locus_tag="VF308_06740"
     CDS             complement(699..1481)
                     /gene="fabI"
                     /locus_tag="VF308_06740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007832278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004318 - enoyl-[acyl-carrier-protein]
                     reductase (NADH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEX7436382.1"
                     /translation="MGFLAGKRFLITGMLSNRSIAYGVARACRREGADLAFSYQGERF
                     RERVAEFAAEFGSNLVFDLDVAEDAQIDRVFTQLGQAWPEYDGLVHSIGFAPREAISG
                     DFLEGLSREAFRVAHDISSYSFPALAKAAAPRLRKGSALLTLTYLGALRSVPNYNMMG
                     LAKASLEASVRYLAASLGPRGVRVNGISAGPIKTLAASGIKGFARILEAVETYSPLRR
                     NVTIDDVGNVAAFLLSDLAAGITSEITYVDCGFSHVMAGAAE"
     gene            1693..2265
                     /gene="rimP"
                     /locus_tag="VF308_06745"
     CDS             1693..2265
                     /gene="rimP"
                     /locus_tag="VF308_06745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEX7436383.1"
                     /translation="MSWQGAIETTVKGLGYELVDAEKSAGGLLRVFIDHVAPEGSAPR
                     FITVDDCEKVTRQLLHMLEVEGCAYQRLEVSSPGLDRPLKKAADYQRFAGEQIELTLK
                     MPFKGRKKYRGELQAREGGWRLALGDAVAGEAACQALDFSLDEVREARLVPVIDFKGR
                     RVAPSPGAQDESGAGVAALAGGGVDGGRIQ"
     gene            2262..3815
                     /gene="nusA"
                     /locus_tag="VF308_06750"
     CDS             2262..3815
                     /gene="nusA"
                     /locus_tag="VF308_06750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007865395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HEX7436384.1"
                     /translation="MNRDLLDFVDAIAREKSVDLEVVFAAVEAALASASKKLHGGEVD
                     MRVSIDRESGDYETFRRWHVVPNEAGLQLPDSEILHFEAVEQIPDIEVDDYIEEQVDS
                     VPIGRIGAQAAKQVILQKIRDAEREQLLTDFLSRGEKIFVGTVKRLDKGDVIVESGRI
                     EGRLRRSEMIPKENLRTGDRVRAYIAEVDPTLRGPQILLSRSAPGFMIELFAQEVPEI
                     EQKLLEIKSCARDPGSRAKIAVVSHDKRVDPIGTCVGVRGSRVNAVTNELAGERVDIV
                     LWSEDPAQFVIGALAPANVQSIVVDEERHAMDVVVDEENLAIAIGRGGQNVRLASEMT
                     GWRINIMTAEESSAKQAEESDSVRKLFIDKLDVDAEVADILIAEGFASLEEVAYVPMQ
                     EMLEIESFDEDTVNELRTRAKDALLTMEIAKEEGVNDVSQDLRDFEGLTPELIGQLAE
                     GGVHTRDDLADLAVDELVELTGIDDEQAKALIMKAREHWFAAEAASALEATPAAATAP
                     AAETAGVQD"
     gene            3859..6696
                     /gene="infB"
                     /locus_tag="VF308_06755"
     CDS             3859..6696
                     /gene="infB"
                     /locus_tag="VF308_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEX7436385.1"
                     /translation="MASTTVAQLAAELNRSAVALLEQLQSAGVSKASTDDSLTETDKA
                     RLLDHLRSAHGTIASAERKKITLTRKSTSEIKQADSSGRARTIQVEVRKKRTFIKRDD
                     AAPAVDESAAVAAHEADLQRREEEAYAQAEQLRRQEEELAEQRRQREVQERQEREAAE
                     AVEARAREAAEKAAAAAAATVAPAKPAKSKAAGAKAEAAAPVAPVVPAEPPKPAVRMI
                     KAAVVENEEKQRATDLAKRRKAAEDEAAAIRVMMSAPKKVLVAKKPEEPKVADAAGIK
                     GTIHKKIGAPGTAAVAKPGDKKSIKSEKLSSSWADDAAKKRALKPAGRGPLGRSGAGW
                     RAPRAGRRGERNDGAPSTFVAPVEQQVQEVHVPETISVADLAHKMSVKASEVIKQLMK
                     LGQMVTINQQLDQETAMIVVEEMGHTALAAKLDDPDAFLEEETDADAQHEMLPRAPVV
                     TVMGHVDHGKTSLLDYIRTSRVAAGEAGGITQHIGAYHVDTPRGMITFLDTPGHAAFT
                     AMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAAGVPIVVAMNKVDKPEANIERL
                     KSELVAEQVVPEDFGGDSPFVPVSAKTGAGIDTLLEQVLLQAEVLELKAPKDTMAKGL
                     VIEAQLDKGRGPVATVLVQSGTLKRGDVVLAGSSFGRVRAMLDEDGKSITEAGPSIPV
                     EIQGLTEVPQAGDEFMVLGDERRAREIATFRQGKYRDVKLAKRQAANLETMMDQMGQG
                     AKQTLALIVKADVQGSQEALAQSLLKLSTDEVKVQIVHAAVGGISESDINLAIASKAV
                     IIGFNVRADAGSRKLAESNGVDIRYYNIIYDAVDEVKAAMTGMLAPEQREEVIGTAEI
                     RTVFVASKIGTVAGSMVTAGLVRRGARFRLLRDNVVIYTGEVESVRRLKDDVREVAAG
                     FECGIKLKNYNDIAEGDQLEFFEVKEVARTL"
     gene            6775..7140
                     /gene="rbfA"
                     /locus_tag="VF308_06760"
     CDS             6775..7140
                     /gene="rbfA"
                     /locus_tag="VF308_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEX7436386.1"
                     /translation="MRHKRSIPNRGFRVADQIQRDVAELIRDLKDPRVGMVTIHAVEV
                     TPDYAHATVFFSVLIGEPQECEAALNEAAGFLRNGLFKRLQIHTVPTLHFKFDRTTER
                     AAELNALIAKANATRAQED"
     gene            7146..8123
                     /gene="truB"
                     /locus_tag="VF308_06765"
     CDS             7146..8123
                     /gene="truB"
                     /locus_tag="VF308_06765"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEX7436387.1"
                     /translation="MPAARTLATPKIARRAVHGVLLLDKPLGLSSNDALQKAKRLYRA
                     EKAGHTGTLDPLATGLLPVCFGAATKFSQVSLDADKTYRATLRLGVTTTTADAEGDVV
                     ERREVRVTHAQVRAACAAFVGASLQLPPMHSALKHGGKPLYEYARAGINVAREARAVA
                     IHSIDVVEGQGDCWTIDVHCGKGTYIRTLAEDIGKTLGCGAHLQALRRSASGPLSIKA
                     AHTLADLEALDEAARDALLRGPDALLAEWPLIRLASEDAGRFLSGERRRVALADAPKV
                     RVYGPQPNAFLGGGHIAGGELISTRLLSPIEAGAVQFAPVGLTHPSSPT"
     gene            8120..>8693
                     /locus_tag="VF308_06770"
     CDS             8120..>8693
                     /locus_tag="VF308_06770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEX7436388.1"
                     /translation="MTRQIRNIAIIAHVDHGKTTLVDQLLRQSGTFRENEKVAERVMD
                     SNDLERERGITILAKNCAVEWKGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAV
                     EGPMPQTRFVTRKALALGLNPIVVVNKVDRPGARPDYVINATFDLFDKLHATEEQLDF
                     PVIYASGLNGWASLTPGVVGTDLAPLFDAML"
BASE COUNT         1611 a         2868 c         2957 g         1257 t
ORIGIN      
        1 gaacacgctg ctgaccgcgc tgcagcagtt caaggacgac tacgaccgca accagccgct
       61 ctggcgcatc ctgcccgagt tctgctcggc gcatccgcgc tacgagcgca tggggctgcg
      121 cgacctcgcg cagagcatcc acgaaacgta tgccaaggac gatatcgcgc ggctcaccac
      181 cgaaatgtat ctctccgacc tgcagccggc catgaagccg agcgacgcgt tcgcccatat
      241 cgcgcaccgc aagaccgagc gggtgccgat cgacgacctc gaagggcgga tcacgacctc
      301 gctgctgacg ccatacccgc ccggcatccc cctgctgatt ccgggcgagc gcttcaaccg
      361 caagatcgtc gagtacctgc gcttcacgcg ggccttcaac gcggccctcc cgggcttcga
      421 caccgatgtg cacggcctcg tctcgaccac cgagacccag ggcgtcacga tcgaggacgg
      481 gcgctatttc gtggactgcg tgcgggcaga gtgagcggct gtgcaatcgc gtctgacgtt
      541 tgcagctgcc cgccgggact cggcccggca tgccgagtga ctttcttttg ctggcccaga
      601 agaaagtaac agcaagagaa agttacgcgg ctgccggccg cgaccggcgg gctctcgcga
      661 gcagcgccgg ccctaaagcg ggccctcgcg agcagcgctt actccgccgc gcccgccatc
      721 acgtggctga acccgcagtc cacgtaggtg atctccgagg tgatgccggc ggccaggtcg
      781 gagagcagga aggcggcgac gttgccgaca tcgtcgatcg tcacgttgcg gcgcaagggc
      841 gagtaggtct cgaccgcctc gaggattctg gcgaagccct tgatgcccga ggcggcgagc
      901 gtcttgatcg gtccggccga gatgccgttg acgcgcacgc cgcgcgggcc gaggctcgcc
      961 gcgaggtagc gcacgctcgc ctcgagcgac gctttcgcca ggcccatcat gttgtagttc
     1021 gggacgctgc gcaatgcgcc gaggtaggtg agcgtcagca gcgcggagcc cttgcgcagg
     1081 cgcggtgcgg cagccttggc gagcgccggg aagctgtagc tcgagatgtc gtgcgcgacg
     1141 cggaatgcct cgcgcgaaag accctcgagg aagtcgccgg aaatcgcctc gcgcggggcg
     1201 aagccgatcg agtgcacgag accgtcgtat tcgggccagg cttggcccaa ctgtgtgaag
     1261 acgcggtcga tctgggcatc ttcggccacg tcgaggtcga agaccaggtt cgagccgaac
     1321 tcggcggcga attcggcgac gcgctcccgg aagcgctcgc cctggtagct gaacgcgagg
     1381 tcggcgccct cgcgccggca ggcccgggcg acaccgtagg cgatcgaccg gttggagagc
     1441 atgccggtga tcaggaagcg tttgccggct agaaagccca tgatgtctcc tgcgggtgat
     1501 tggcgccgga ttttggcatg cgacgccgca ccgggcgtcc ggcggagtgc cggccttgcc
     1561 cgggcttcgc acaggcagta caatcttctt tttccgaaaa aagctcgaat gggcggagtc
     1621 ttccggccca ttttttttgc ttgatcgctt tttcaagcgc cccatatagc gaagaggttg
     1681 gacaagcagg caatgagttg gcaaggcgcc atcgagacga ccgtcaaggg tctcggctac
     1741 gagttggtcg acgctgaaaa gagcgccggc gggctgctac gcgtcttcat cgatcacgtc
     1801 gcgccggaag gctccgcgcc gcgcttcatc acggtcgatg attgtgaaaa ggtgacgcgc
     1861 cagctcctgc acatgctcga agtggagggc tgcgcctacc agcgcctcga ggtgtcgtcg
     1921 cctggcctgg accggccgct gaaaaaagcg gccgactacc agcgtttcgc gggcgagcag
     1981 atcgagctga cgctgaagat gccgttcaag gggcgcaaga agtatcgcgg cgagttgcag
     2041 gctcgcgaag gcggctggcg cctcgcgctc ggcgacgccg tagctggcga ggcggcatgc
     2101 caagcgctgg atttttcgct cgacgaagtg cgcgaggccc ggctcgtgcc ggtgatcgat
     2161 ttcaaggggc gccgcgtcgc gccgtccccg ggcgcacagg acgagtcggg cgccggagtt
     2221 gcggcgctcg ccggtggtgg ggttgatgga ggtcggattc aatgaaccgc gatttgcttg
     2281 attttgtgga cgccatcgcg cgtgagaaga gcgtcgacct cgaagtcgtg ttcgccgcgg
     2341 tcgaagccgc cctcgcttcg gcgtcaaaga agctgcatgg cggcgaggtc gacatgcgcg
     2401 tttcgatcga ccgcgaaagc ggcgactacg agaccttccg gcgctggcac gtggtgccga
     2461 acgaggccgg gctgcagttg cccgactcgg agatcctaca tttcgaggcg gtcgaacaga
     2521 tccccgacat cgaggtcgac gactacatcg aggagcaggt tgactcggtg ccgatcggcc
     2581 ggatcggcgc gcaggccgcc aagcaggtga tcctgcagaa gatccgcgat gccgagcgcg
     2641 aacagctgct caccgacttt ctctcgcgtg gcgagaagat tttcgtcggc accgtcaaac
     2701 gtctcgacaa gggcgacgtg atcgtggagt cgggccgcat cgaagggcgc ctgcgccgca
     2761 gcgaaatgat tccgaaggaa aacctgcgca cgggcgaccg ggtgcgggcc tacatcgccg
     2821 aggtcgaccc gaccctgcgc gggccgcaga tcctgctctc gcgcagcgca ccgggcttca
     2881 tgatcgagct cttcgcgcag gaagtgcccg agatcgagca gaagctgctc gagatcaagt
     2941 cgtgcgcccg cgatccgggc tcgcgcgcga agatcgcggt ggtctcgcat gacaagcgcg
     3001 tcgatccgat cggcacctgc gtgggcgtgc gcggttcgcg cgtcaacgcg gtgaccaacg
     3061 aactggccgg cgagcgcgtc gacatcgtgc tttggtccga agacccggcg caattcgtga
     3121 tcggcgcgct ggcgccggcg aacgtgcagt cgatcgtcgt cgacgaggag cgtcacgcga
     3181 tggacgtcgt cgtcgacgag gagaacctcg cgatcgcgat cggccgcggc ggccagaacg
     3241 tccgcctggc ctccgagatg accggctggc gcatcaacat catgaccgcc gaagagtcct
     3301 cggccaagca ggccgaagaa tccgacagcg tccgcaagct cttcatcgac aagctcgacg
     3361 tcgatgccga ggttgccgac atcctcatcg ccgagggttt tgcgagcctc gaggaagtcg
     3421 cctacgtccc gatgcaggag atgctcgaga tcgagagctt cgacgaggac accgtcaacg
     3481 agctgcgcac ccgcgccaag gatgcgttgc tgacgatgga aatcgccaag gaagagggcg
     3541 tcaacgacgt ttcgcaggat ctgcgcgact tcgaaggcct cacgcccgag ttgatcggcc
     3601 aactcgccga gggcggcgtg cacacgcgcg acgacctggc cgacctcgcg gtcgacgagc
     3661 tggtggagct caccggcatc gatgacgaac aggccaaggc cttgatcatg aaggcgcgcg
     3721 aacactggtt cgcggccgaa gcggcatccg ccctcgaggc gactcctgcc gccgccacgg
     3781 cgcccgccgc cgagacggcc ggcgtccagg attgaccgcc ctgcacacgc tacgacagaa
     3841 agcttaagga acctacccat ggcctcgaca accgtcgccc aactcgccgc ggagctcaat
     3901 cgctccgccg tggcgttgct tgagcagttg cagtcggccg gcgtcagcaa ggcgtcgacg
     3961 gacgattcgc tgactgagac cgacaaggct cgcctgctcg accacctgcg ctcggcgcac
     4021 ggcacgatcg ccagcgcgga gcgcaagaag atcacgctga cgcgcaagtc gacgagcgag
     4081 atcaagcagg ccgattcgag cggtcgtgcc cggacgatcc aggtcgaggt tcgaaagaag
     4141 cgcaccttca tcaagcgcga cgatgcggcg cccgccgtcg acgagtccgc cgccgtggcg
     4201 gcccatgagg ccgatctgca gcggcgcgag gaagaggcgt acgcccaggc cgagcagctg
     4261 cggcgccagg aagaagagct tgccgagcag cgacgccagc gcgaagtgca ggaacggcag
     4321 gagcgcgaag ccgccgaggc cgtggaagcg cgcgcccgcg aggcggccga gaaggcggcg
     4381 gccgcagccg cggcaaccgt ggcgccggcc aagccggcga agagcaaggc ggcaggtgcc
     4441 aaggccgaag ccgcggcacc cgtcgctccg gtcgttccgg cggagccgcc gaaaccggcg
     4501 gtgcggatga tcaaggccgc cgtcgtcgaa aacgaggaaa agcagcgcgc caccgatctc
     4561 gcaaagcgcc gcaaggcggc cgaagacgaa gccgcggcga tccgggtgat gatgtcggcg
     4621 ccgaagaagg tgctggtcgc gaagaagccc gaggaaccga aggtggccga cgcggccggc
     4681 atcaagggca caattcacaa gaagatcggc gctccgggca cggctgcggt cgccaagccc
     4741 ggcgacaaga aatcgatcaa gtccgaaaag ctctcgtcga gctgggccga cgacgccgcg
     4801 aagaagcgcg cgctcaaacc cgccggtcgt ggcccgttgg gccgcagcgg cgccggctgg
     4861 cgtgcgccgc gcgcaggtcg ccgcggcgaa cgcaacgacg gtgcgccgtc gaccttcgtc
     4921 gcgcccgtcg agcagcaggt gcaggaagtt cacgtgcccg agacgatcag cgtcgccgac
     4981 ctggcccaca agatgtcggt gaaggcgtcc gaggtcatca agcagctgat gaagctgggc
     5041 cagatggtca cgatcaacca acagctcgac caggagacgg cgatgatcgt cgtcgaggaa
     5101 atgggtcata ccgcgctggc cgcgaagctc gacgacccgg atgcgttcct cgaggaagag
     5161 accgatgccg atgcgcagca cgagatgctg ccgcgcgcgc cggtcgtcac cgtgatgggc
     5221 cacgtcgatc acggcaagac ctcgctgctc gactacatcc gcacctcccg cgtggcggcg
     5281 ggcgaggccg gcggcatcac ccagcacatc ggcgcgtacc acgtcgacac gccgcgcggc
     5341 atgatcacct ttctcgacac gccgggccac gccgcgttca cggcgatgcg ggcgcgcggc
     5401 gccaaggcga ccgacatcgt gatcctggtc gtcgccgccg acgacggcgt gatgccgcag
     5461 accaaggagg cgatcgccca cgcgaaggcg gcgggcgtgc cgatcgtcgt cgcgatgaac
     5521 aaggtggaca agcccgaggc gaacatcgag cggctcaagt ccgaactcgt cgccgagcag
     5581 gtcgttccgg aagatttcgg cggcgactcg ccgttcgttc cggtctcggc aaagaccggg
     5641 gccggcatcg acacgctgct cgagcaggtt ctcctgcagg ccgaggtgct cgagctgaag
     5701 gcgccgaagg acaccatggc caagggcctc gtgatcgaag cccagctcga caagggccgc
     5761 ggaccggtcg cgacggtgct ggtgcagagc ggcacgctca agcgcggcga cgtggtgctg
     5821 gcgggatcga gcttcgggcg cgtgcgcgcg atgctcgacg aggacggcaa gtccatcacc
     5881 gaggccggcc cttcgattcc ggtcgagatc cagggcctga ccgaggtgcc gcaggcgggc
     5941 gacgagttca tggtgctcgg cgacgagcgc cgcgcgcgcg aaatcgcgac cttccgccaa
     6001 ggcaagtacc gcgacgtgaa gctcgccaag cgccaggccg cgaacctcga gaccatgatg
     6061 gaccagatgg ggcagggcgc caagcagacg ctcgcgctca tcgtcaaggc cgacgtccag
     6121 ggttcgcagg aagctctcgc ccagtcgctg ctcaagctct cgaccgacga ggtcaaggtg
     6181 cagatcgtgc atgccgcggt cggcggcatc tcggagagcg acatcaacct cgcgatcgcg
     6241 tcgaaggccg tgatcatcgg cttcaacgtg cgcgccgacg ccggctcgag gaagctcgcc
     6301 gagagcaacg gcgtcgacat ccgctactac aacatcatct acgacgcggt cgacgaggtg
     6361 aaggcggcga tgaccggcat gctggccccg gagcagcgcg aggaagtcat cggcacggcc
     6421 gagatccgca ccgtattcgt ggcctcgaag atcggcacgg tggccggttc gatggtcacg
     6481 gcgggcctcg tgcgccgagg cgcccgcttc cgcctgctgc gcgacaacgt ggtcatctac
     6541 accggcgaag tcgaatcggt gcgacgcctg aaggacgatg tgcgcgaggt cgcggccgga
     6601 ttcgagtgcg gcatcaagtt gaagaactac aacgacatcg ccgagggcga ccagctcgag
     6661 ttcttcgaag tcaaggaagt cgcccgaacc ctgtagagcg gaattcgtcc cagccgaacc
     6721 ccgccctcca aaagacggcg gggttcttgt ttgcgacacc gaaaggaact cacgatgcga
     6781 cacaagcgat cgataccgaa ccggggtttc cgcgtcgccg accagattca gcgcgacgtg
     6841 gccgaactga ttcgcgacct gaaggatccg cgcgtcggca tggtcacgat ccacgcggtc
     6901 gaggtgacgc cggactacgc gcacgcgacg gtgttcttct cggtgctgat cggcgagccg
     6961 caggaatgcg aggccgcatt gaacgaggcc gccggcttcc tgcgcaacgg cctgttcaag
     7021 cgcctgcaga tccacaccgt gccgacgctg cacttcaagt tcgatcgcac caccgagcgc
     7081 gccgccgaac tgaacgccct gatcgcgaaa gccaacgcga cccgggccca ggaagactga
     7141 acgcagtgcc ggccgcccgc acgcttgcaa ctccgaagat cgcacgccgc gcagtccacg
     7201 gcgtgctgct gctcgacaag ccgctcggcc tgtcgagcaa cgacgcgctg cagaaggcca
     7261 agcgcctcta ccgcgccgag aaggccgggc acaccggcac gctcgacccg ctcgccaccg
     7321 ggctgctgcc ggtctgcttc ggtgcggcga cgaagttctc gcaggtgagc ctggacgccg
     7381 acaagaccta tcgcgcgacc ctgcggctcg gcgtcacgac gaccaccgcg gacgcggaag
     7441 gcgatgtcgt cgaacgccgc gaggttcgcg tgacccacgc acaggtgcgt gcagcctgcg
     7501 ccgcgttcgt cggcgcgagc ctgcaactgc cgccgatgca ttcggcgctc aagcacggcg
     7561 gcaagcccct ttacgaatac gcccgggccg gcatcaacgt cgcgcgcgag gcccgggccg
     7621 tggcgattca ttcgatcgat gtcgtcgaag ggcagggcga ttgctggacg atcgacgtgc
     7681 actgcggcaa gggcacctat attcgcacgc tcgccgaaga catcggcaaa acgctcggct
     7741 gcggcgcgca tctgcaggcc ttgcgccgca gcgccagcgg accgttgtcg atcaaggccg
     7801 cccacacgct cgccgatctg gaagcgctcg acgaggcggc gcgcgacgcg ctgttgcggg
     7861 ggcccgatgc gctgctcgcg gagtggccgc tgatccgtct cgcgagcgag gacgccgggc
     7921 gcttcctcag cggcgagcgc cgccgtgtgg cgcttgccga tgcgccgaag gtgcgcgtct
     7981 acggtccgca gccgaatgcc ttcctcggcg gcggccacat cgcgggtggc gaactgattt
     8041 caacccggct tctgagcccg atcgaggccg gggcggtgca gttcgcaccc gtcggcttga
     8101 cccatccgag cagtccgaca tgacccgaca gatccgcaac atcgccatca tcgcccacgt
     8161 cgaccacggc aagacgacgc tcgtggacca attgctgcgc cagagcggca cgttccggga
     8221 aaacgagaag gtggccgagc gcgtcatgga ctcgaatgac ctcgagcgcg agcgcggcat
     8281 cacgatcctc gccaagaact gcgcggtcga gtggaagggc acgcacatca acatcgtcga
     8341 tacgcccggc cacgccgact tcggcggcga ggtcgagcgg gtgctctcga tggtcgacag
     8401 cgtgctgctg ctcgtcgacg ccgtcgaagg cccgatgccg cagacccgct tcgtcacgag
     8461 gaaggcgctc gcgctcggcc tcaatccgat cgtcgtcgtc aacaaggtcg atcgccccgg
     8521 cgcgcggccc gactacgtga tcaatgcgac cttcgatctc ttcgacaagc tccacgcgac
     8581 cgaggaacag ctcgactttc ccgtcatcta cgcgtcgggc ctcaacggct gggcgagcct
     8641 gacccccggc gtggtcggca ccgatctggc gcccttgttc gatgccatgc tga
//
LOCUS       DASVHM010000357         1731 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_892952, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000357 DASVHM010000000
VERSION     DASVHM010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_892952"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1386
                     /gene="amt"
                     /locus_tag="VF308_06775"
     CDS             <1..1386
                     /gene="amt"
                     /locus_tag="VF308_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007873832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEX7436389.1"
                     /translation="GAEAAASAASAAASAPVPNKGDVAWMLVSTALVIMMSIPALALF
                     YGGLVRSKNMLSVLMQVFVTFSMIVVLWCLYGYSLAFTEGNAFFGGFDRVFMKGMYDP
                     IAGTMAMAGTFSKGVAIPELLFMAFQATFAAITCCLIVGAFAERMKFAAVLAFMVLWF
                     TFAYAPIAHMVWFWPGPDAYTSKAIVDATNAKAGLIWQWGTLDFAGGTVVHINAAMAG
                     LVGAFMVGKRIGYGREAFTPHSLTLTMVGAALLWVGWFGFNAGSALEAGNSAVLAFIN
                     TFSATAAAVLAWSLGEAMTNKGKASMLGAASGAVAGLVAITPACGNVGLLGALVIGFV
                     AGFACLWGVNGLKKMLGADDSLDVFGVHGVGGIVGALLTGVFNSPSLGGPSFPDNWFT
                     GELVKPENYSIASQVWAQAKAVLVTIAWSGIVSLIAYKLVDMTIGLRVSEEDEREGLD
                     ITSHGETAYNS"
     gene            1541..>1731
                     /locus_tag="VF308_06780"
     CDS             1541..>1731
                     /locus_tag="VF308_06780"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013804765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HEX7436390.1"
                     /translation="MVPHLITALTGPINELEQRMLESLPAIERWFRLEWMEHTPPFYT
                     SVDLRNAGFKLAPVDTNLFP"
BASE COUNT          244 a          608 c          569 g          310 t
ORIGIN      
        1 ggcgccgagg cagcggcctc cgcggcatcg gctgcggctt ccgcaccggt gcccaacaag
       61 ggcgacgtcg cgtggatgct cgtgtccacc gcgctcgtca tcatgatgtc gatcccggcc
      121 ctggcgctgt tctacggcgg cctcgtgcgc agcaagaaca tgctgtcggt gctgatgcag
      181 gtgttcgtca ccttctcgat gatcgtcgtg ctgtggtgcc tctacggcta cagcctggcc
      241 ttcaccgagg gcaacgcctt cttcggcggc ttcgaccggg tgttcatgaa aggcatgtac
      301 gacccgatcg ccggaacgat ggcgatggcc gggacgttca gcaagggcgt cgccattccc
      361 gagctgctgt tcatggcgtt ccaggcgacc ttcgcggcga tcacctgctg cctgatcgtc
      421 ggcgcgttcg ccgagcgcat gaagttcgcc gcggtgctcg cgttcatggt gctctggttc
      481 accttcgcct atgcgccgat cgcgcacatg gtctggttct ggccgggccc ggatgcctac
      541 acgagcaagg cgatcgtcga cgccaccaac gccaaggccg gcctgatctg gcagtgggga
      601 acgctcgact tcgccggcgg cacggtcgtc cacatcaacg ccgcgatggc cggcctggtc
      661 ggcgccttca tggtcggcaa gcggatcggc tacggccgcg aagcgttcac gccgcattcg
      721 ctgacgctga cgatggtcgg tgccgcgctg ctgtgggtgg gctggttcgg cttcaacgcc
      781 ggctcggcgc tcgaagccgg caacagcgcc gtgctcgctt tcatcaacac cttctcggcc
      841 acggccgcgg cggtgctggc gtggagcctc ggcgaggcga tgaccaacaa gggcaaggca
      901 tcgatgctcg gcgccgcgtc cggcgccgtc gccggcctgg tggcgatcac gccggcgtgc
      961 ggcaacgtcg gcctgctcgg cgcgctcgtc atcggcttcg tcgccggctt cgcctgcctc
     1021 tggggcgtca acggcctgaa gaagatgctc ggcgccgacg actcgctcga cgtcttcggc
     1081 gtccacggcg tcggcggcat cgtcggggcg ctcctgaccg gcgtcttcaa ctcgccgtcg
     1141 ctgggcggcc cgagcttccc ggacaactgg ttcacgggcg agctggtcaa gcccgagaac
     1201 tactcgatcg ccagccaggt ctgggcgcag gccaaggccg tcctggtgac catcgcctgg
     1261 tcgggcatcg tctcgctgat cgcctacaag ctggtcgaca tgacgatcgg tctgcgcgtc
     1321 agcgaggaag acgagcgcga aggtctggac atcacctccc acggcgagac cgcctacaac
     1381 agctgaacgg gctcgtcgcc tccgggcgac tgccggggcc accgcgtgcg gtggcccttt
     1441 ttcttgctcc cgccggtcgc ttgcgtccgc gtgcgggtac cccatatgcc tagaatctcg
     1501 gctccgcccg ccgcccccag caggcagcga gctcctcgcc atggtccccc acctcatcac
     1561 cgcgctcacc ggcccgatca acgagctcga gcagcgcatg ctcgagtcgc tgccggcgat
     1621 cgaacggtgg ttccggctcg aatggatgga gcacacgccg ccgttctaca cgtcggtcga
     1681 cctcaggaac gccggcttca agctggcgcc ggtcgacacc aacctgttcc c
//
LOCUS       DASVHM010000358         2549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_893120, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000358 DASVHM010000000
VERSION     DASVHM010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_893120"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..615
                     /locus_tag="VF308_06785"
     CDS             <1..615
                     /locus_tag="VF308_06785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005796758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEX7436391.1"
                     /translation="IVIGFGRMAGEVVGFVANQPLVLAGCLDIKSSIKGARFVRFCDA
                     FGIPVITFVDVPGFMPGTAQEYGGIIKHGAKLLFAYAECTVPKITVITRKAYGGAYDV
                     MSSKHLRGDVNLAWPNAEIAVMGAKGAVEIIFREEKGDPEKLAAREAEYRAKFANPFI
                     AGARGYIDDVIQPHETRRRICRSLVMLRDKKVDDPWRKHGNIPL"
     gene            627..>2549
                     /locus_tag="VF308_06790"
     CDS             627..>2549
                     /locus_tag="VF308_06790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl/propionyl/methylcrotonyl-CoA carboxylase
                     subunit alpha"
                     /protein_id="HEX7436392.1"
                     /translation="MFKKILIANRGEIACRVIKTARRMGIGTVAVYSEADRDALHVAL
                     ADEAVFIGPAPSRESYLVADKIIAACKQTGAEAVHPGYGFLSENAEFARRVEAEGIVF
                     IGPKHASIAAMGDKIASKKLAGAAKVNTIPGYNAVIDTPEQAVGIAKDIGYPVMIKAS
                     AGGGGKGLRVATNDTEAFEGYTTCRNEARNSFGDDRVFIEKFVEEPRHIEVQVLGDAQ
                     GHCVYLWERECSIQRRHQKVIEEAPSPFLDDATRKAMGEQAVALANAVNYQSAGTVEF
                     VVGKDRSFFFLEMNTRLQVEHPVTECITGIDLVEQMIRVAAGEPLGFTQQQIRHQGWA
                     IECRINAEDPFRGFLPSTGRLVKYQPPLQTLEAARPAPKDFGGVRVDTGVYEGGEIPM
                     FYDSMICKLIVHGSDRADAIGRMREALNAFVIRGVSSNIPFQSALLSHPRFVAGLFNT
                     GFIAEEFPKGFSMASVRHHEPDFLLALAAAANRRTLDRAALISGQLPGHEMRIGEGFV
                     VVVADAQGHREGVPVAVRAQGPVIEVALRGKVYPIALEGHLRDVVVRGECAGVPFCVQ
                     IERLGLGYRLSHNGAWIEARVLAPRAAELYALMPVKARPDMSRFLLSPMPGLLVDVAV
                     KPGQAVRAGERLAVIEA"
BASE COUNT          430 a          855 c          865 g          399 t
ORIGIN      
        1 atcgtcatcg gcttcggccg catggccggc gaggtcgtcg gcttcgtcgc caaccagccg
       61 ctggtgctcg ccggctgcct cgacatcaag agcagcatca agggggcgcg cttcgtgcgg
      121 ttctgcgatg ccttcggcat cccggtgatc accttcgtcg atgtgcccgg cttcatgccg
      181 ggcacggcgc aggagtacgg cggcatcatc aagcacggcg ccaagctgct cttcgcctat
      241 gccgagtgca ccgtgccgaa gatcaccgtg atcacgcgca aggcctacgg cggggcctac
      301 gacgtgatga gctccaagca cctgcgcggc gacgtcaacc tcgcctggcc gaacgccgag
      361 atcgcggtga tgggcgccaa gggcgcggtc gagatcatct tccgcgagga aaagggcgac
      421 ccggaaaagc tcgccgcgcg cgaagccgaa tacagggcca agttcgcaaa ccccttcatc
      481 gccggcgcgc gcggctacat cgacgacgtg atccagccgc acgagacgcg ccggcgcatc
      541 tgccgctcgc tggtgatgct gcgcgacaag aaggtcgacg acccgtggcg caagcacggc
      601 aacattccgc tgtgagcgcg cctgccatgt tcaagaagat cctgatcgcc aaccgcggcg
      661 agatcgcctg tcgcgtcatc aagacggcgc ggcggatggg catcggcacg gtggcggtct
      721 actccgaggc ggaccgcgac gcgctccatg tcgcactcgc cgacgaagcg gtcttcatcg
      781 gccccgcacc gagccgcgag tcgtacctcg tggccgacaa aatcatcgcg gcctgcaaac
      841 agaccggcgc cgaggccgtg cacccgggct acggctttct ctccgagaac gccgaattcg
      901 cgcgccgcgt cgaggccgaa ggcatcgttt tcatcgggcc gaagcacgcg tcgatcgcgg
      961 cgatgggcga caagatcgcg tcgaagaagc ttgccggtgc ggcgaaggtc aacaccattc
     1021 cgggctacaa cgccgtgatc gacacccccg agcaggccgt cggcatcgcg aaggacatcg
     1081 gctacccggt gatgatcaag gcctcggccg gcggcggcgg caagggcctg cgggttgcga
     1141 ccaacgacac cgaggcgttc gagggctaca cgacctgccg caacgaggcg cgcaacagct
     1201 tcggcgacga ccgggtcttc atcgagaagt tcgtcgagga gccgcgccac atcgaggtcc
     1261 aggtgctcgg cgatgcgcag ggtcattgcg tctatctctg ggagcgcgag tgctcgatcc
     1321 agcgccgcca ccagaaggtc atcgaagagg cgccgagccc cttcctcgac gacgcgacgc
     1381 gcaaggcgat gggcgagcag gccgtggccc tggcgaacgc cgtcaactat cagtcggccg
     1441 gcacggtgga gttcgtcgtc ggcaaggacc gcagtttttt cttcctcgag atgaacacgc
     1501 gcctgcaggt cgagcacccg gtcaccgaat gcatcaccgg gatcgacctc gtcgagcaga
     1561 tgatccgcgt ggccgccggc gagcctctcg gcttcacgca gcaacagatt cgacaccagg
     1621 gctgggccat cgaatgccgc atcaatgccg aggatccgtt ccgcggcttc ctgccgtcga
     1681 ccggacgcct ggtgaagtac cagccgcccc tgcagacgct cgaagcggcg cggccggcgc
     1741 cgaaagactt cggcggcgtc cgggtggaca ccggcgtcta cgagggcggc gagatcccga
     1801 tgttctacga ctcgatgatc tgcaagctga tcgtgcacgg cagcgaccgc gccgatgcga
     1861 tcgggcgcat gcgcgaagcg ctaaacgcct ttgtgatccg cggagtctcg agcaacattc
     1921 cgttccagtc ggcgctgctc tcgcatccgc gcttcgtcgc cggtctgttc aacaccggct
     1981 tcatcgccga ggagtttccg aagggattct cgatggcatc ggtgcgccat cacgagcccg
     2041 atttcctgct cgcgctggcc gccgcggcga atcggcgcac gctcgatcgg gccgcgctga
     2101 tcagcggcca gttgcccggg cacgagatgc ggatcggcga aggcttcgtc gtcgtcgtcg
     2161 cggatgcgca gggccaccgc gaaggggttc ccgtggccgt gcgtgcgcag ggccccgtca
     2221 tcgaggtcgc cctgcgcggg aaggtctatc cgatcgcgct cgagggccat ctgcgcgatg
     2281 tcgtcgtgcg cggcgagtgc gccggcgtgc cgttttgtgt gcagatcgaa cggctcgggc
     2341 tcggctaccg cctgtcccac aatggcgcct ggatcgaggc gcgggtgctg gcgccgcgcg
     2401 ccgccgagct gtacgcattg atgccggtga aggcccgacc cgacatgtcg aggttcctgc
     2461 tctcgccgat gccgggactg ctggtcgacg tggcggtgaa gcccgggcag gcggtgcgcg
     2521 cgggcgagcg cctcgcggtc atcgaagcg
//
LOCUS       DASVHM010000359         2698 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_965317, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000359 DASVHM010000000
VERSION     DASVHM010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2698
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_965317"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..>2698
                     /gene="pepN"
                     /locus_tag="VF308_06795"
     CDS             52..>2698
                     /gene="pepN"
                     /locus_tag="VF308_06795"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013722729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HEX7436393.1"
                     /translation="MREGTAPLVRREDYAPPPFWIRKIDLTFDLDPAKTLVINRMQVE
                     RNPAVSAGPLKLHGDDIALTRCLANGESVSFRHEDGMLVIDHLPEGSFTLEIRSTCSP
                     EKNTRLSGLYTSSGGFFTQCEAEGFRRITYFLDRPDVMAEYTVLLRANKAAYPVLLSH
                     GNLVEQGDLDNGRHFARWHDPFPKPSYLFALVAAELVAREQHIRSRSGKDHLLQVYVR
                     RGDLDKTEHAMNSLVASVVWDEARFGLALDLERFMIVAVGDYNMGAMENKGLNIFNTK
                     YVLASAATATDNDFAAIESVVGHEYFHNWTGNRITCRDWFQLSLKEGLTVFRDQEFSM
                     DMVASASARATVRIANVRNLRQVQFPEDAGPMAHPVRPDSYVEINNFYTSTVYEKGAE
                     VVRMMQTLVGRDGFARGMKLYFDRHDGHAVTCDDFAQAIADANPASDLARLLPQFKRW
                     YSQSGTPKVTARGRYDAPSRTYTLGLEQSSHGAANEPFVIPLAMGLVGRDGRALPLRL
                     EDEAAGRAATSRVLVLDEARSFFTFVDVDQAPVLSLLRGFSAPVIVADGLGDGDLLVL
                     LRHDSDPFNRWEAGQRIALHRLLAAVHSGEPALLDADFIAAMRDVLRHPALDPAFKEL
                     VLTLPSEAYVAEQLDVVDPQKIHAAREAMKRSLARELRADWEWAFEAHQVIGGYSPDP
                     VSSGRRALANLSLTMLCLDGAERADPVWPGRAYQRFKDASNMTERQGALAALLFSGSS
                     LADAALEHFLAMFEGDALVVDKWFTLQAATPEHGDQVFGRVQRLLRHPAFNIANPNRA
                     RSLIGAFCLGNPAGFHRADGAGYAFWADRVLEIDAINPQLASRTARALDRWARLAEPY
                     KAAARIAIARVAAHPKLSNDTREIVS"
BASE COUNT          426 a          994 c          871 g          407 t
ORIGIN      
        1 acggcggccc gaaaggccag gctgcgcgtg catacgttct gaaagaaaac catgcgtgaa
       61 ggcactgccc ccctcgtccg ccgcgaagac tacgcgccgc ctcccttctg gatcaggaaa
      121 atcgacctga cgttcgacct cgatccggcc aagaccctgg tcatcaaccg gatgcaggtc
      181 gagcgcaatc cggccgtgtc ggccggcccg ctcaagctgc acggcgacga catcgcgctg
      241 acgcgctgcc tggccaacgg cgagtcggtg tcgtttcgcc acgaagacgg aatgctcgtc
      301 atcgatcacc tgcccgaggg cagcttcacg ctcgagatcc gcagcacctg ctcgcccgag
      361 aagaacacac gcctgtcggg cctgtacacc tcgagcggcg gcttcttcac gcagtgcgag
      421 gccgaggggt tccggcgcat cacgtatttc ctcgaccgcc ccgacgtgat ggccgagtac
      481 acggtgctcc tgcgcgccaa caaggcggcc tacccggtgc tgctctcgca cggcaacctg
      541 gtcgagcagg gcgatctcga caacggccgc cacttcgccc gctggcacga tccgtttccg
      601 aagccgagct acctgttcgc gctcgtcgcc gccgagctgg tcgcgcgcga gcagcacatc
      661 cgctcgcgct ccggcaagga ccacctgctg caggtctacg tgcgccgcgg cgacctcgac
      721 aagaccgagc acgcgatgaa ttcgctcgtc gcctcggtcg tctgggacga ggcgcgcttc
      781 ggcctcgcgc tcgacctcga gcgcttcatg atcgtcgccg tcggcgacta caacatgggc
      841 gcgatggaga acaagggcct caacatcttc aacaccaagt acgtgctggc gagcgcggcg
      901 acggcgaccg acaacgactt cgcggcgatc gaatcggtcg tcggccacga gtacttccac
      961 aactggaccg gcaaccggat cacctgccgc gactggttcc agctgagcct gaaggaaggc
     1021 ctgacggtct ttcgcgacca ggagttcagc atggacatgg tggcgagcgc gagcgcgcgc
     1081 gcgaccgttc gcatcgccaa cgtgaggaac ctccgccagg tgcagttccc ggaagacgcc
     1141 ggcccgatgg cgcacccggt gcggcccgac agctacgtcg agatcaacaa cttctatacc
     1201 tcgaccgtct acgagaaggg cgccgaggtc gtccgcatga tgcagacgct ggtcggccgc
     1261 gacggcttcg cgcgtggcat gaagctctac ttcgatcgcc acgatggcca tgccgtcacc
     1321 tgcgacgact tcgcgcaggc gatcgccgac gccaacccgg cgagcgacct ggcgcgcctg
     1381 ctgccgcagt tcaagcgctg gtactcgcag tcgggaacgc cgaaggtgac cgcgcgcggc
     1441 cgctacgacg cgccgtcgcg cacctacacg ctcggcctcg agcagtcgtc ccacggcgcg
     1501 gcgaacgagc cgttcgtcat cccgctggcg atggggctgg tcggccgcga cgggcgcgcg
     1561 ctgccgctgc gcctcgagga cgaagccgcc ggcagggcgg cgacctcgcg ggtgctcgtc
     1621 ctcgacgagg cgcgctcgtt cttcaccttc gtcgacgtcg accaggcgcc ggtgctgtcg
     1681 ctgctgcgcg gcttctcggc gccggtcatc gtcgccgatg gtctcggcga cggtgacctg
     1741 ctggtgctcc tgcgccacga cagcgatccg ttcaaccgct gggaggccgg ccagcgaatc
     1801 gccctgcacc gcctgctcgc ggcggtgcac agcggcgagc cggcgctgct cgacgccgac
     1861 ttcatcgccg cgatgcgcga cgtgctgcgc catcccgcgc tcgaccccgc cttcaaggag
     1921 ctcgttctca ccctgccgag cgaggcctac gtcgccgagc agctcgacgt cgtcgatccg
     1981 cagaagatcc acgctgcgcg cgaggcgatg aagcgaagcc tcgcgcgcga gctgcgcgcc
     2041 gactgggagt gggcgttcga ggcgcaccag gtgatcggtg gctattcgcc cgacccggtc
     2101 tcgtccggcc gccgcgccct cgccaacctg agcctgacga tgctctgcct cgacggtgcc
     2161 gagcgcgccg acccggtctg gccgggtcgc gcctaccagc gcttcaagga cgcgtcgaac
     2221 atgaccgagc gccagggcgc gctcgccgcc ctgctgttct cgggatcgag cctcgccgac
     2281 gccgccctcg agcacttcct ggcgatgttc gaaggcgacg cgctcgtcgt cgacaagtgg
     2341 ttcacgctgc aggcggccac gcccgagcac ggcgaccagg tgttcgggcg cgtccagcgg
     2401 ctgctgcgcc acccggcctt caacatcgcc aatccgaacc gcgcgcgcag cctgatcggc
     2461 gcgttctgcc tcggcaaccc ggcgggcttt caccgtgccg acggcgcggg ctacgcgttc
     2521 tgggccgatc gcgtcctcga gatcgatgcg atcaacccgc agctcgcctc gcgcaccgcc
     2581 cgggcgctcg atcgctgggc caggctcgcc gagccgtaca aggcagccgc gcgcatcgcg
     2641 atcgcacgcg tcgctgcgca cccgaagctc tcgaacgaca cccgcgagat cgtgtccc
//
LOCUS       DASVHM010000360         5949 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_387751, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000360 DASVHM010000000
VERSION     DASVHM010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5949
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387751"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1424)
                     /locus_tag="VF308_06800"
     CDS             complement(<1..1424)
                     /locus_tag="VF308_06800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010466082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009306 - protein secretion [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA];
                     GO_process: GO:0071978 - bacterial-type
                     flagellum-dependent swarming motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEX7436394.1"
                     /translation="MNALMQQVQGLLGPNAKAIRALMAPLVVVMILAMMVLPLPAFAL
                     DLLFTFNIAMALMVMMVAAYMVRPLDFAAFPAVILLTTLLRLSLNVASTRVVLLEGHT
                     GAAAAGKVIESFGHFLIGGNFAVGLIVFAILVVINFVVVTKGAERIAEVGARFTLDAM
                     PGKQMAIDADMNAGLIDEKEAKRRRSEVGEEAEFFGSMDGASKYVRGDAMAGLLILFI
                     NLIGGFVIGVAQHDLTAAQAADSYILLAVGDALVAQIPALLISVAAAMVVSRVGKEHD
                     VGSQIAKQVFSSPRSLAITAGVLAALGLIPGMPHVVFLLIGSGLAYGAWSLRRRAQRE
                     KDAPPPAAVIPEANAEASWDDLQPVDTLGLEVGYRLIALVDKARQGDLLARIKGVRRK
                     FAQDVGFLPPPVHIRDNLELKPSAYRLSLRGAVVGEGEAYPGMLLAINPGGASTQLIG
                     TTTTDPAFGLPAVWIEERQRETAQ"
     gene            complement(1567..2712)
                     /locus_tag="VF308_06805"
     CDS             complement(1567..2712)
                     /locus_tag="VF308_06805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
                     /protein_id="HEX7436395.1"
                     /translation="MADQNPQDKNLPASQRKLDKARADGQVARSRDLGHFAAVATGGA
                     LLVAFAPAASAWLKQLLMRGLRFDAGSLQDPAFMTARLSELAIGLLCVVAPFGFAMMA
                     VAIAGGFALSGWTWTFKPLGPRFDKFNPLTGFARLLSKAQVIDAAKASALALILGVIG
                     AFYLKSHLDIFSGLLALPLPAAIGQAGQATLSGLGLLLLVLAAFAAVDVPLQRHLHAQ
                     RLKMSHQELKQEQKELEGNAEVKAKVRTRMREMTKRRMIAAVPKADLVVMNPTHYAVA
                     LKYDDGRMAAPRVVAKGADLMALTIRDIAKGAQVPVLQAPVLARALYAHAELDREIPA
                     ALFAAVAQVLAYVYQLRAALQGRGAQPSELPALDVPVELDPHHGMAL"
     gene            complement(2843..4024)
                     /locus_tag="VF308_06810"
     CDS             complement(2843..4024)
                     /locus_tag="VF308_06810"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7436396.1"
                     /translation="MAASAGYLVAKVDLALLRDTPASDAALVLGAGALALVAAAGGLL
                     RWRDRQVLRSSQAREADQAQRLRDLELLRSIATESTDVIFAQQDARPVRDAIPPDSRP
                     APSGDGYRSLQTTHAGALILLAEDNLINQEVAVELLRSAGLTVEVASNGTEAFAMAQA
                     RAYDLILMDVQMPEVDDLQATRALRATPGGRTVPIVAMTANAFGEDREACLAAGMNDH
                     IAKPVHPDLLYATLLCWLPARTREPAVAAAPDHEPRAAIKESGSLRSRLAAIEGLDVV
                     RGLKLFDGRMESYFRVLRTFASMYVIGMPEIDQALAADSPVQMAAAGHLLRGASGSIG
                     ATQLEALAGVLEGRGGALASPEAAAAAVALQALLIETAGKLRHVVEEEDEALAPGIAW
                     R"
     gene            complement(4190..4606)
                     /locus_tag="VF308_06815"
     CDS             complement(4190..4606)
                     /locus_tag="VF308_06815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7436397.1"
                     /translation="MSDATDPRFLIVDDFSTMRRVMCALLKEIGFERAEAAADGGVAL
                     DMLRKSAFDFVITDILMPNMNGFELLTAIKADEKLKHLPVLMVTAEARKDDILRSMQC
                     GAAGYIVKPFTRATLEERVRKILQKPAALAEASPGR"
     gene            complement(4639..5607)
                     /gene="motB"
                     /locus_tag="VF308_06820"
     CDS             complement(4639..5607)
                     /gene="motB"
                     /locus_tag="VF308_06820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEX7436398.1"
                     /translation="MAGDSKKLQPIIIKRVRKGGHNKHGGAWKIAYADFVTAMMAFFL
                     LMWLLGSTAEGDKKGIADYFNAPLKVSFVGGSGSGDSSSVIRGGGADLSRASGQVKQG
                     DIPAPKKTINLAALKAEQRRAEAAQLEALKAKVEELIDTSPKLAAMKSQIRLDMTRDG
                     LRIQIVDEQNRPMFDSGSAIVKPYMRELLRDIGQVLADVPNRITLEGHTDAQPFVSGE
                     RGYSNWELSSDRANSSRRELLAGGLPEDRMLLVQGLASSTLFDANAPQSPVNRRISII
                     VMNRDAEDRLLRTPVATAETDPAPALAPVAAIAAAVATVAPVAVPH"
     gene            complement(5611..>5949)
                     /locus_tag="VF308_06825"
     CDS             complement(5611..>5949)
                     /locus_tag="VF308_06825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013596656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEX7436399.1"
                     /translation="PAFGIVAAVLGVVNTMGSVGQPPAILGGMIGSALVGTFLGILLA
                     YAVVEPLGGLMEQKVDEGSKELQCIKTTLLASMQGYAPQVAVEFGRKVLYSGDRPTFA
                     ELEGHVKGKK"
BASE COUNT          945 a         2041 c         2031 g          932 t
ORIGIN      
        1 atctgtgcgg tttcgcgctg gcgctcctcg atccacaccg cgggcagccc gaaggccggg
       61 tcggtggtcg tggtgccgat caactgggtc gacgcacccc cgggattgat ggcgagcagc
      121 atgcccggat aggcctcgcc ctcgcccacc accgcgccgc gcagcgagag gcgataggcg
      181 ctcggcttca attccaagtt gtcgcggatg tgcaccggcg gcggcaggaa acccacgtcc
      241 tgcgcgaact tgcggcgcac ccccttgatg cgggcgagca ggtcgccctg gcgcgccttg
      301 tcgacgagcg cgatcaggcg atagccgacc tcgaggccga gcgtgtcgac cggttgcagg
      361 tcgtcccagc tcgcctcggc attggcctcg ggaatgacgg ccgcaggcgg cggtgcatcc
      421 ttttcgcgct gcgcgcgccg gcgcagcgac caggctccgt aggccaggcc cgatccgatc
      481 aggaggaaaa cgacgtgggg catgccgggg atcagaccga gcgctgccag cacgccagcg
      541 gtgatcgcga gcgagcgcgg cgagctgaag acctgtttcg cgatctggct gccgacgtcg
      601 tgttccttgc cgacgcgcga gaccaccatc gccgcggcga ccgagatcag cagcgccggg
      661 atctgcgcga ccagcgcgtc gccgaccgcc agcaggatgt agctgtcggc ggcctgcgcg
      721 gccgtgagat cgtgctgggc gacgccgatc acgaagccgc cgatcaggtt gatgaagagg
      781 atcaggaggc ccgccatcgc gtcgccgcgg acgtacttgc tggcaccgtc catcgagccg
      841 aagaattcgg cttcctcgcc gacttcggag cggcgccgct tggcttcctt ctcgtcgatc
      901 aagccggcgt tcatgtcggc gtcgatcgcc atctgcttgc ccggcatcgc gtcgagggtg
      961 aagcgcgcgc cgacctcggc gatgcgctcg gcgcccttcg tgacgaccac gaagttgatg
     1021 accaccagga tcgcgaagac gatcaggccg accgcgaaat tgccgccgat caggaagtgg
     1081 ccgaacgact cgatcacctt gcccgccgcg gcggcgccgg tgtgaccctc gagcagcacg
     1141 acgcgcgtcg aggccacgtt gagcgaaagg cgcagcaggg tcgtgagcag gatcaccgcg
     1201 gggaacgcgg cgaagtcgag cggccgcacc atgtaggccg cgaccatcat caccatgagc
     1261 gccatcgcga tgttgaaggt gaagagcagg tcgagcgcga aggccggcag cggcaacacc
     1321 atcatcgcga ggatcatcac gacgacgagc ggcgccatca aggcgcggat ggccttcgca
     1381 ttggggccga gcaggccttg cacctgttgc atcagagcgt tcatgagtgg tctcgttcga
     1441 cttgcagcag cccgccggtc gcggccggcc gccgcctaac cttctctcgc tggctcaaaa
     1501 gggtttggag tgactcggca tgccgggccg agacccggcg ggctctcgcg agtgtcaaaa
     1561 ggacactcat agcgccatcc cgtgatgcgg atcgagctcc accggcacgt cgagcgccgg
     1621 gagttcgctg ggctgtgcac ccctgccctg gagcgcagcc cgcagctggt acacataggc
     1681 gagcacctgc gccaccgcgg cgaagagcgc cgccggaatc tcgcggtcga gttcggcgtg
     1741 ggcgtagagc gcgcgcgcca gcaccggggc ctgcagcacc ggcacctggg ctcccttggc
     1801 gatgtcgcgg atcgtcagcg ccatgaggtc ggcgcccttg gccacgacac gcggcgccgc
     1861 catgcggcca tcgtcgtact tgagggcgac ggcgtagtgg gtcgggttca tcacgaccag
     1921 gtcggccttg ggcaccgcgg cgatcatgcg gcgcttcgtc atctcgcgca tgcgcgtgcg
     1981 caccttcgcc ttgacttcgg cgttgccctc gagctccttt tgctcctgct tcaattcctg
     2041 gtggctcatc ttcaggcgct gcgcgtgcag gtgacgttgc aaaggcacgt cgaccgcggc
     2101 gaacgcggcg agcacgagca gcagcaggcc gaggccgctc agcgtggcct gcccggcctg
     2161 gccgatcgcc gccggcagcg gcaacgccag caggcccgag aagatgtcga ggtggctctt
     2221 caggtagaac gcaccgatca cgcccaggat cagcgccagc gcgctcgcct tggctgcatc
     2281 gatcacctgt gccttggaaa gcaggcgtgc aaatccggtc agcggattga acttgtcgaa
     2341 gcgcggcccg agcggcttga acgtccaggt ccagccgctc aatgcaaatc cgcccgcgat
     2401 cgcgacggcc atcatcgcga acccgaacgg cgccacgacg cagagcagcc cgatcgcaag
     2461 ttccgaaagg cgcgccgtca tgaaggccgg gtcctgcagc gagccggcgt cgaagcggag
     2521 cccgcgcatc aggagctgct tcagccaggc cgaggccgcc ggcgcgaacg cgacgaggag
     2581 cgcgccgccg gtcgccaccg cggcgaagtg gccgaggtcg cgcgaacgcg ccacctggcc
     2641 gtcggcgcgc gccttgtcga gcttgcgctg cgaggcgggg aggttcttgt cctgtgggtt
     2701 ctggtcggcc atggcgaaac gccgcggatg ggcgcctcgt cattgttccg gggagctcgg
     2761 aaaacttgag cccgagtaga aggggaaagc cggcgcattt cgcatccagg cgcacccggc
     2821 aggtcgacgc cgcccgcccc ggtcacctcc aggcgatgcc cggtgcgagc gcttcgtcct
     2881 cctcctcgac gacgtggcgc agcttgccgg ccgtctcgat cagcagcgcc tgcagcgcga
     2941 ccgctgcggc ggccgcttcc ggactcgcca atgcgccgcc gcgcccctcc agcacacccg
     3001 ccaacgcctc gagttgcgtc gcgccgatgg acccgcttgc gccgcgcagc aaatgtccgg
     3061 ccgccgccat ctggaccggc gaatcggcgg cgagcgcctg atcgatctct ggcatcccga
     3121 tgacgtacat cgaggcaaac gttcgcagca cgcgaaagta gctctccatg cggccatcga
     3181 agagcttgag accgcgaacc acgtcgagcc cctcgatcgc cgccagccga gaccgcaagg
     3241 agccggattc cttgatcgcg gcacgcggtt catgatcggg cgccgctgcc accgcaggct
     3301 cgcgcgtgcg cgccggcagc cagcacagca gcgtcgcgta caagaggtcg ggatggaccg
     3361 gctttgcgat gtgatcgttc atgccggccg cgaggcaggc ctcgcgatct tcgccgaagg
     3421 cgttggcggt catcgcgacg atcggcaccg tgcgcccgcc cggcgtcgcc cgcaacgcgc
     3481 gggttgcctg caggtcgtcg acttcgggca tctgcacgtc catgaggatg agatcgtagg
     3541 cgcgcgcctg cgccatcgcg aacgcctcgg tcccgttcga agccacctcg accgtgaggc
     3601 cggccgagcg caacaactcg accgcgacct cctggttgat gaggttgtct tcggcaagaa
     3661 ggatcagcgc tccggcatgt gtcgtctgca agctgcggta gccgtcgccg ctcggcgccg
     3721 gcctcgagtc gggcggaatt gcgtcgcgca ccggccgggc gtcctgctgc gcgaagatca
     3781 catcggtcga ttcggtcgcg atcgaacgga gcagttccaa atcgcgcagc cgctgcgcct
     3841 gatcggcttc ccgggcctgc gacgaccgca agacctgccg gtcgcgccag cgcaggaggc
     3901 cgcccgccgc ggcgacgaga gcgagcgcgc cggcgccgag gaccagggcg gcgtcgctgg
     3961 caggggtgtc tcgcagcagg gccaggtcga ccttcgcgac caggtacccg gcgctggccg
     4021 ccatgcccaa aagcgccgcg cccgcgagca gaaggccggc tcggaacacg cccccggggc
     4081 gtcggcggga tgcttcggat gcctttcagc gctcacgggc tcggtcggac gcgcctgcta
     4141 gcgtcacacc gcgcaatccc gactgtcaga acgggtcgtt cgacccgttt catcgacccg
     4201 gactggcttc cgccagggca gcgggcttct gcaggatctt gcgcacgcgt tcctcgaggg
     4261 tcgcgcgcgt gaacggcttg acgatgtagc cggccgcgcc gcactgcatc gaacgcagga
     4321 tgtcgtcctt gcgcgcctcg gcggtcacca tcagcaccgg cagatgcttc agcttctcgt
     4381 cggccttgat cgccgtgagc agttcgaagc cgttcatgtt cggcatcagg atgtcggtga
     4441 tgacgaaatc gaaggccgac ttgcgcagca tgtcgagcgc gactccgccg tctgcagccg
     4501 cttcggcgcg ctcgaagccg atctctttca gcagagcgca catgacgcgg cgcatcgtcg
     4561 agaagtcgtc gacgatcagg aatctcgggt cggtcgcgtc gctcatcgca gtcctggtcg
     4621 ggtcgaaaaa gaatcaggtc aatggggcac agcgaccggg gcgaccgtgg cgaccgcggc
     4681 agcaatcgcg gcaaccgggg cgagcgcagg cgcggggtcg gtctcggccg tcgcgacggg
     4741 cgtgcgcagc aggcggtctt cggcgtcgcg gttcatcacg atgatgctga tgcgccggtt
     4801 caccgggctc tgcggcgcat tcgcgtcgaa cagcgtgctc gaggccaggc cctgcaccag
     4861 cagcatccgg tcctcgggca ggccgccggc gaggagctcg cgccgtgacg agttggcgcg
     4921 gtcgctcgaa agctcccagt tgctgtagcc gcgctcgccg ctcacgaacg gttgggcatc
     4981 ggtgtggccc tcgagcgtga tgcggttcgg cacgtcggcg aggacctggc cgatgtcgcg
     5041 caggagttcg cgcatgtagg gcttgacgat ggcactgccg ctgtcgaaca tcggccggtt
     5101 ctgttcgtcg acgatctgga tcctcaggcc gtcgcgggtc atgtcgaggc ggatctgcga
     5161 cttcatcgcc gcgagcttcg ggctcgtgtc gatcagttcc tcgaccttgg ccttgagcgc
     5221 ctcgagctgc gccgcctcgg cacggcgctg ctcggccttc agcgcagcca ggttgatggt
     5281 cttcttgggc gccggaatgt cgccctgctt gacctggccc gacgcgcgcg acaggtcggc
     5341 gccgccgccg cggatcacgg acgacgaatc gcccgagccg ctgccgccga cgaacgaaac
     5401 cttcagcggc gcgttgaagt aatcggcgat gcccttcttg tcgccctcgg ccgtcgagcc
     5461 gagcagccac atcagcagga agaacgccat catcgccgtc acgaagtcgg cgtaggcgat
     5521 cttccaggcg ccgccatgct tgttgtggcc gcccttgcgg acgcgcttga tgatgatcgg
     5581 ctggagcttc ttcgagtcac cggccatggt tcacttcttt cccttgacgt gaccttcgag
     5641 ctcggcgaac gtcggccggt cgcccgaata gagcaccttg cgcccgaatt ccaccgcgac
     5701 ctgcggcgca tagccctgca tgctcgcgag cagggtcgtc ttgatgcact gcagctcctt
     5761 cgagccttcg tcgaccttct gctccatcag accgccgagc ggctcgacca cggcgtaggc
     5821 gagcaggatg ccgaggaagg tgccgaccag cgccgagccg atcatgccgc ccaggatcgc
     5881 cggcggctgg ccgaccgagc ccatggtatt gaccacgccg agcaccgccg cgacgatgcc
     5941 gaacgccgg
//
LOCUS       DASVHM010000361         2516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_312946, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000361 DASVHM010000000
VERSION     DASVHM010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312946"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..231)
                     /locus_tag="VF308_06830"
     CDS             complement(<1..231)
                     /locus_tag="VF308_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7436400.1"
                     /translation="MSAYAHYPSLADRTVLVTGGATGIGASLVEHFAAQGARVGFIDI
                     DGAAGAALVGRLAGARTAPLFVAADLTDTAALR"
     gene            312..1247
                     /locus_tag="VF308_06835"
     CDS             312..1247
                     /locus_tag="VF308_06835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7436401.1"
                     /translation="MSDISVYQPRRAARSQFIPVRGLRTHVLTWGDASLVTPERPALV
                     MLHGWMDVAASFQFVVDALPSERQVIALDWRGFGLTDTPAGDTYWIPDYVGDLDAALD
                     ILVPGQAIDLVGHSMGGNVVMLYAGLRPARIRRLVNLEGFGMPQTKPAQAPKRFVQWL
                     DDLKTPHQLRTYRSLEAVAARLQKTNPLLRSDRAAWLAQHWSRQRNQSDVTPGEWEIL
                     GDPAHKRQTPILYHVEDVLECWKLISAPLLWVEGDKTDIGRWWGRRYTKEEFHQRLGV
                     VANVERHVLAPAGHMLHHDQPEALAQRLESFLDAP"
     gene            complement(1270..2058)
                     /locus_tag="VF308_06840"
     CDS             complement(1270..2058)
                     /locus_tag="VF308_06840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020831462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="slipin family protein"
                     /protein_id="HEX7436402.1"
                     /translation="MIFDFFSFGLGGVVLLLLLLAAASLRILREYERGVVFQLGRFWK
                     VKGPGLVLIVPGVQQMVRVDLRIVTLDVPPQDVISRDNVPVKVNAVVFFRVIDPERAI
                     IQVANYLMATSQLAQTTLRVVLGKHELDEMLAERERLNLDVQRILDAQTDGWGIKVTN
                     VEIKDIDLNDVMIRAIARQAEAERERRAKVIHAEGEKQAAAALLEAARMLALQPEAMQ
                     LRYLQTMTQVAGDRGSTIVFPVPMELLGGLITKLRAEPKPPVEP"
     gene            complement(2055..>2516)
                     /locus_tag="VF308_06845"
     CDS             complement(2055..>2516)
                     /locus_tag="VF308_06845"
                     /inference="COORDINATES: protein motif:HMM:NF014062.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HEX7436403.1"
                     /translation="NYAGLALLLLGIALLGAEVVLSAFGVLGIGGVVAFVAGAILLFD
                     RDVPGFGVPLALIGALAASSAVVVLLTANLALRARRRPVVSGREQLAGARGEVLRVDG
                     GEAWAQVLGERWRVHSDQPLVAGQRVRVLRLRGLALDVQIEDNESTGGRAP"
BASE COUNT          418 a          910 c          830 g          358 t
ORIGIN      
        1 gcgcagcgct gcggtgtcgg tcaggtctgc cgcgacgaac agaggcgccg tgcgcgcgcc
       61 ggccagcctg ccgacgaggg ccgcgccggc cgcgccatca atgtcgatga aaccgacccg
      121 cgcgccctgg gcggcgaaat gctcgaccag gctggcaccg atgccggtgg cgccgccggt
      181 gacgagcacc gtgcggtcgg cgaggctggg gtagtgggcg taagcgctca tgggatgccg
      241 tctgcggcca tcgtaacgcc gtgtcccgcc ctcgacagcg cgcgacgccg cactccccta
      301 cagtgcgggg catgagcgac atctccgtct accaaccccg gcgcgccgcg cgcagtcaat
      361 tcattccggt gcgcggcctg cgcacccacg tcttgacctg gggcgacgcc tcgctcgtca
      421 cgcccgagcg ccccgcgctc gtgatgctgc acggctggat ggacgtggcg gcgtcgttcc
      481 agttcgtcgt cgacgcgctg ccgagcgagc gccaggtgat cgcgctcgac tggcgcggct
      541 tcggcctcac cgacacgccc gcgggcgaca cctactggat ccccgactac gtcggcgacc
      601 tcgacgccgc gctcgacatc ctcgtccccg gtcaggcgat cgatctcgtc ggccacagca
      661 tgggcggcaa cgtcgtgatg ttgtacgccg ggttgcggcc ggcgcgcatc cgccggctcg
      721 tcaacctgga aggcttcggc atgccgcaga ccaaacccgc gcaagcgccc aagcgcttcg
      781 tgcagtggct cgacgacctg aagacgccgc accagctacg cacctatcgg agcctcgagg
      841 ccgtcgccgc gcgactacag aagaccaatc cgctgctgcg aagcgaccgt gccgcctggc
      901 tcgcgcagca ctggtcgcgt cagcgcaacc agtccgacgt cacgccgggc gagtgggaaa
      961 tcctcggcga cccggcgcac aagcggcaga cgccgatcct ctaccacgtc gaggatgtgc
     1021 tcgagtgctg gaagctcatc agcgcgccgc ttctctgggt cgagggcgac aagaccgaca
     1081 tcgggcgctg gtggggcagg cgctacacca aggaagaatt ccaccagcgc ctcggtgtgg
     1141 tcgcgaatgt cgaaaggcat gtgctggcgc ccgccggcca catgctgcac cacgaccaac
     1201 ccgaggcact cgcgcagcgc ctcgagagtt ttctcgacgc accctgaggc gtccggcatc
     1261 ggcgcgcggt tagggctcca caggcggctt cggctccgca cgcagcttcg tgatgaggcc
     1321 gccgaggagc tccatcggca ccggaaagac gatcgtcgaa ccgcggtcgc cggccacctg
     1381 cgtcatcgtc tgcaagtagc gcaactgcat cgcctcgggt tgcagggcca gcatccgcgc
     1441 ggcttcgagc agcgccgcgg cggcctgctt ctcgccttcg gcatggatca ccttggcgcg
     1501 gcgctcgcgt tcggcctcgg cctggcgcgc gatcgcgcgg atcatcacgt cgttcagatc
     1561 gatgtccttg atctcgacgt tggtgacctt gatgccccag ccgtcggtct gggcatcgag
     1621 gatgcgttgc acgtcgaggt tgagccgctc gcgctcggcc agcatctcgt cgagttcgtg
     1681 cttgccgaga acgacgcgca aggtcgtctg cgccagttga ctggtggcca tcaggtaatt
     1741 ggcgacctgg atgatcgcgc gctcgggatc gatgacgcgg aagaagacca ccgcattgac
     1801 cttgaccggc acgttgtcgc gcgagatcac gtcctgcggc ggcacgtcca gggtcacgat
     1861 gcgcagatcg acgcgaacca tctgctggac acccggaacg atgagcacca gccccggccc
     1921 cttgaccttc cagaagcggc cgagttgaaa caccacgccg cgttcgtatt cgcgcaggat
     1981 gcgcagcgac gcagcggcca gcaacagcag cagcagcacg acgccgccca ggccaaaact
     2041 gaagaagtcg aaaatcatgg cgctcgccct ccggttgatt cgttgtcctc gatctgcacg
     2101 tcgagcgcca gcccgcgcag gcgcagcacg cgaacgcgct gccccgccac gagcggctgg
     2161 tcgctgtgca ctctccagcg ctcgccgagg acctgcgccc acgcctcgcc accgtcgacc
     2221 cgcagcacct cgccgcgggc accggcgagc tgctcgcgcc cgctgacgac cggccggcgc
     2281 cgggcgcgca gcgccaggtt ggcggtgagc agcacgacca ccgccgagct cgcagcgagc
     2341 gcaccgatca gggctagcgg cacgccgaat cccggcacgt cgcgatcgaa cagcagaatg
     2401 gcgccggcca cgaacgcaac cacgccgccg atgccgagca cgccgaaggc cgacagcacg
     2461 acctcggcgc cgagcagtgc gatgccgagc agcagcagcg ccagcccggc gtagtt
//
LOCUS       DASVHM010000362         3070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1252849, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000362 DASVHM010000000
VERSION     DASVHM010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3070
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1252849"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1374)
                     /locus_tag="VF308_06850"
     CDS             complement(<1..1374)
                     /locus_tag="VF308_06850"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEX7436404.1"
                     /translation="MNSRTGSALDYLPEQPRVLLVDDDEVNLLLTSVALRERGFSVTE
                     ATSGERAIRILADWLPDVVVLDALMPGLDGFQTCRELRLLPGFESLPVLMLTGLDDDA
                     SITRAYEAGATDFFVKSTQWSLLAGRLRYLLRASRTRVELERSKSRLARAQDLARMGS
                     FDWRKGQGGPVFSIEGLRVFGVGPDQHLNFRKLLRMVPDEERNAFIELTHNAMERSTV
                     LATDIHARLADGRQRIVHLEAEPEFNEHGNLVGYTGIVQDVTDRRLAEDRIRHLANFD
                     TLTGLPNRRQLIWRAERALEHGRRQNHQVALLLIDLDRFKVINDTLGHGAGDELLVEV
                     ARRLRSCVRHSDQVLESSLETVGVRSHRTLEAVGRLGGDEFVALLPEVIDERDAERVA
                     ERILEAMRQPITIGMQECFVTASVGIAIFPRDGASVADLLRNSDVAMYSVKSAGRNSS
                     SVYRPSLS"
     gene            complement(1371..1775)
                     /locus_tag="VF308_06855"
     CDS             complement(1371..1775)
                     /locus_tag="VF308_06855"
                     /inference="COORDINATES: protein motif:HMM:NF013767.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009927 - histidine phosphotransfer kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HEX7436405.1"
                     /translation="MKDAAAGGSPADERGGDAVLDVEALRRLGELDPTGANRLLERVF
                     EAFEASVVRLLPQLHAAHKAADHAGMRHVTHTLKSSSASIGAIKLSQLCAEIEGMIRL
                     DNLEGLAARIDRMDHETAVVLQALKQVPGVAS"
     gene            complement(1808..2545)
                     /locus_tag="VF308_06860"
     CDS             complement(1808..2545)
                     /locus_tag="VF308_06860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436406.1"
                     /translation="MLLRLSRLSSWLAAAAGGLALFGPIAQRPLCIDMALALAGAAFV
                     LWRAALALRGRLERRADAIPAALRLDAASLGDAEALVARRAAEAPGFEAALHDVADTL
                     RGELGARAARVFLVCAADGSVALAELVAVRPGFRTPRRAAPADDSALGRALREQRPST
                     DLPRALALPVLNDGSVVAIVELLGIDMTIDEPGLAQLLVAAQQSLGARFAHAAARSPP
                     PDTTRRTCLAARRGAFGAPAEPGGCAC"
     gene            2801..>3070
                     /locus_tag="VF308_06865"
     CDS             2801..>3070
                     /locus_tag="VF308_06865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436407.1"
                     /translation="MLFAAILVWWQGTSPPTEVTAGASAAAPQRPSPLPGLLASALLA
                     GLAAWFFLRLQERAALGRQSRTELHALCDLLDVWQWQTDAQHRLVV"
BASE COUNT          483 a         1067 c         1083 g          437 t
ORIGIN      
        1 cgacaggctc ggccggtaca ccgacgagga attgcggccc gccgacttga ccgagtacat
       61 cgccacgtcg gagttgcgca acaggtcggc gacgctcgca ccgtcgcgcg ggaagatcgc
      121 gatgccgacg ctggcggtga cgaagcactc ctgcatgccg atcgtgatcg gctggcgcat
      181 cgcttcgaga atgcgttcgg cgacgcgttc ggcgtcccgc tcgtcgatca cttccggcaa
      241 cagggcgacg aactcgtcgc cgccgagccg gccgaccgct tccagcgtgc ggtgcgaacg
      301 cacgccgacg gtctcgagcg agctctcgag cacctggtcc gagtggcgta cgcacgagcg
      361 gagccgcctc gcgacttcga ccagcagctc gtcgcccgca ccatggccga gcgtgtcgtt
      421 gatgaccttg aagcggtcga ggtcgatcag cagcagcgcc acctggtggt tctgccgccg
      481 gccgtgctcc agcgcccgct cagcccgcca gatcagctgg cgacggttcg gcaggccggt
      541 cagggtgtcg aaattggcaa ggtggcggat ccggtcttcg gccaggcgcc gatccgtcac
      601 gtcctggacg atgccggtgt agccgaccag gttgccgtgc tcgttgaact cgggctcggc
      661 ctcgaggtgg acgatccgct gccggccgtc ggccaggcgg gcgtggatgt cggtcgcgag
      721 caccgtgctg cgctccatcg cgttgtgcgt cagctcgatg aaggcattgc gctcctcgtc
      781 gggaaccatg cgcagcaact tcctgaaatt gaggtgctgg tccggcccga cgccgaacac
      841 gcgcaggcct tcgatcgaga acaccggtcc gccctggccc ttgcgccagt cgaaactgcc
      901 catgcgggcg aggtcctgcg cgcgcgccag gcgcgacttg ctgcgctcga gctcgacccg
      961 ggtgcgtgac gcgcgcaaca ggtagcgcag gcggccggcg agcaggctcc actgcgtcga
     1021 cttgacgaag aagtcggtcg cgccggcctc gtaggcgcgc gtgatcgagg cgtcatcgtc
     1081 gaggccggtc agcatcagca ccggcagcga ttcgaagccc ggcaacaggc gcagttcgcg
     1141 acaggtctgg aagccgtcga gcccgggcat cagggcatcg agcacgacca cgtcgggcag
     1201 ccagtcggcg aggatgcgga tggcgcgctc gccgctcgtg gcttcggtga cggagaagcc
     1261 ccgctcgcgc agcgcgaccg aggtcagcag cagattgacc tcgtcgtcgt cgacgagcag
     1321 cacccgcggc tgctcgggca gatagtcgag cgccgacccg gttcgtgaat tcatgatgcg
     1381 acgcccggca cttgcttgag cgcttgcaga acgacagcag tctcgtggtc catccgatcg
     1441 atccgcgcgg caaggccttc caagttgtcg agtcggatca tgccttcgat ttcggcacag
     1501 agttgggaca acttgatggc gccgatgctc gcggaggacg acttcagggt atgcgtcaca
     1561 tggcgcatgc cggcatggtc cgcggctttg tgcgcggcat gcagttgcgg caggaggcgc
     1621 acgacggacg cctcgaaggc ctcgaacacg cgttcgagca ggcgattggc gccggtcggg
     1681 tcgagttcgc cgagccgccg cagcgcttcg acgtcgagca ccgcgtcgcc gccgcgctcg
     1741 tccgccggcg accctcccgc ggcggcgtcc ttcaacggcg cgcagcagcg cctggagaat
     1801 cgtccgatca acatgcgcag ccgcccggtt cggcaggcgc gccgaacgcg ccacgccggg
     1861 cggcgaggca agtgcgccgg gtcgtatccg gcggcggcga gcgcgccgct gcgtgcgcaa
     1921 aacgggcgcc gagcgactgc tgcgcggcca cgagcaattg ggccaggccg ggctcgtcga
     1981 tcgtcatgtc gatgccgagc agttcgacga tggcgacgac gctgccgtcg ttgagcaccg
     2041 ggagcgccag ggcgcgcggc aggtcggtcg aagggcgctg ctcgcgcaag gcgcggccga
     2101 gtgccgaatc gtccgccggc gcggcgcgcc gcggagtccg gaaaccgggc cggaccgcaa
     2161 cgagttcggc gagcgcgacg gatccgtcgg ctgcacaaac caggaagacg cgcgcggcgc
     2221 gcgcgccgag ttcgccgcga agcgtgtcag ccacgtcgtg cagcgcggct tcgaacccgg
     2281 gcgcctcggc agcccggcgc gcgaccagcg cctcggcatc gcccagcgac gccgcatcca
     2341 gccgcagcgc cgcgggtatc gcgtcggccc ggcgctcgag tcgtccgcgc agggccagcg
     2401 cggcacgcca gagcacgaag gcggcaccgg ccagggcgag cgccatgtcg atgcaaagcg
     2461 ggcgctgcgc gatcggcccg aacagggcca gcccacccgc cgctgcggcg agccatgacg
     2521 acaaacggga caagcgcagc agcatgtcag cggattcaag aagcgaacga cgtgaaggat
     2581 agtgacgcgg ctgcggcacc ggggcgcgca ccgcttgcga ggacctcgcc gttttcggca
     2641 atgcgccacg aaacttgagc cgccgcgcgg ctcgcagcgg cccctggcgg gacggcgcag
     2701 gcacccgccg tccctacaat cgaatcaaat gccccgtgtc gacaatgccc gagttgtcag
     2761 gcgccgaccc cttcgacgat gggcggcatt gtgcgcactg gtgctgttcg ccgcaatcct
     2821 tgtctggtgg caagggacct cgcctccgac cgaagtcacg gcgggcgcct ccgctgcggc
     2881 cccgcaacgc cccagcccgc tgcccggctt gctcgcctcg gcgctgctgg ccggcctcgc
     2941 cgcgtggttc ttcctgcgcc tgcaagaacg cgccgcgctg ggtcgccagt cgcgcaccga
     3001 attgcatgcg ctctgcgatc tactcgacgt ctggcaatgg cagaccgatg cgcaacaccg
     3061 cctcgtggtc
//
LOCUS       DASVHM010000363         3667 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_675898, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000363 DASVHM010000000
VERSION     DASVHM010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3667
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_675898"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2449
                     /gene="fdhF"
                     /locus_tag="VF308_06870"
     CDS             <1..2449
                     /gene="fdhF"
                     /locus_tag="VF308_06870"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009665055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009326 - formate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0015942 - formate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HEX7436408.1"
                     /translation="LPRFAARRQPKADVSHPGIAVNLDACIQCTRCLRACREEQVNDV
                     IGYAFRGEHSKIVFDFDDPMGESTCVACGECVQACPTGALMPARGAGLVAADKEVASL
                     CPYCGVGCQLTYHVKDNRIVRVEGRDGPANQGRLCVKGRYGFDYAHHPHRLTVPLIRR
                     ADAVKHAGIALDPERFLEVFREASWDEALERAAGGLKAIRDAQGAGALAGFGSAKCSN
                     EEAYLFQKLVRTGFRSNNVDHCTRLCHASSVAALLEGIGSGAVSNPVMDVLDAEVVIV
                     IGANPTSNHPVAATWIKNAVRRGTKLVLIDPRGSDLARLAYRHLRFKPDTDVALLNAL
                     LHVIVAEGLVDPVFIAERTTGYAELERNVRGYSPEAMALVCGIEAETIREVARLYANS
                     KASMILWGMGISQHVHGTDNARCLIALALATGQIGRPGTGLHPLRGQNNVQGASDAGL
                     IPMMYPDYRRVDDAEARAHFERAWGMSLDPRPGLTVVEVVRAALRGEVRGMYILGENP
                     AMSDPDVNHARAALASLEHLVVQDIFLTETAALADVVLPATAFPEKTGSFTNTDRTVQ
                     LGRQAIDPPGDARQDLWIIEQIAARLGLEWRYADVGAVFDEMRRNMPSLFGITWERLG
                     REGAVTYPCTEEGAPGEPVVFRHDFPTSSGRARFVPADIVPADERPDADYPLVLITGR
                     QLEHWHTGSMSRRASVLDALEPDPVAMLHPSDLAALGARPGDIITLRSRRGEVSLYAR
                     ADASSTQGAVFVPFCYYEAAINRLTNPALDPTAKIPEFKYCAVRALRGGAEPMQLSFG
                     GGRALERAEDSAKPVAG"
     gene            complement(2450..2977)
                     /locus_tag="VF308_06875"
     CDS             complement(2450..2977)
                     /locus_tag="VF308_06875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mpo1-like protein"
                     /protein_id="HEX7436409.1"
                     /translation="MRTATDLLSQYAAYHRDRRNIVSHFIGVPMIVFAVGVLLARPVL
                     PIGGISVTPAGVAFALAAAWYLTRGNLVLGLAVGAAVGVLMRLAHSLAPAGIAAWLAW
                     GVGIFVVGWLIQFVGHWYEGKKPVFVDDLVGLLVGPMFIVAEAMFGLGWNRPMLEEIE
                     QRVGPTVLRDMARIA"
     gene            3110..>3667
                     /gene="dcd"
                     /locus_tag="VF308_06880"
     CDS             3110..>3667
                     /gene="dcd"
                     /locus_tag="VF308_06880"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004632155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEX7436410.1"
                     /translation="MSIKSDKWIRRMAETTGMIEPFEPRQVREAADGRRIVSYGTSSY
                     GYDIRCAPEFKVFTNIYSTVVDPKNFDEKSFVDIAADVCVIPPNSFALARTVEYFRIP
                     RNVLTICLGKSTYARCGIIVNVTPFEPEWEGFVTLEFSNTTPLPAKIYAGEGCAQVIF
                     FESDEVCETSYKDRGGKYQGQQGVTL"
BASE COUNT          613 a         1257 c         1250 g          547 t
ORIGIN      
        1 cctgccaagg ttcgccgcgc gccggcagcc caaggcggac gtttcgcacc cgggcatcgc
       61 ggtcaatctc gacgcctgca tacagtgcac gcgctgcctg cgcgcctgcc gcgaggagca
      121 ggtcaatgac gtgatcggct acgcgtttcg cggcgaacat tcgaagatcg tgttcgattt
      181 cgacgatccg atgggcgagt cgacctgcgt ggcctgcggc gagtgcgtgc aggcgtgccc
      241 gaccggcgca ttgatgccgg cgcgcggcgc gggcctggtc gcagccgaca aggaggtggc
      301 ttcgctctgc ccctactgcg gcgtcggctg ccagctcacc taccacgtca aggacaaccg
      361 catcgttcgc gtcgaaggcc gcgacgggcc ggccaaccag gggcgactct gcgtgaaggg
      421 ccgctacggt ttcgactacg cgcaccatcc gcatcggctg accgtgccgc tgatccgccg
      481 cgctgatgcg gtcaagcacg ccggcatcgc gctcgacccc gagcgcttct tagaggtctt
      541 tcgcgaggcg agctgggacg aagcgctcga gcgcgcggcg gggggcctga aggcgatccg
      601 cgatgcccaa ggcgcgggcg cgctcgccgg cttcggctcg gcgaaatgca gcaacgagga
      661 ggcctacctc ttccagaagc tggtgcgcac gggctttcgc agcaacaacg tcgaccattg
      721 cacgcggctc tgccacgcct catcggtggc cgcgctgctc gaaggcatcg gctcgggcgc
      781 cgtctcgaac ccggtgatgg acgtgctgga cgccgaggtc gtgatcgtga tcggcgccaa
      841 tccgacttcg aatcatccgg tcgccgcgac ctggatcaag aacgccgtgc gccgcggcac
      901 gaagctcgtg ctgatcgacc cgcgcggctc cgacctggcg cgcctggctt atcgccacct
      961 tcgtttcaag cccgataccg atgtcgcgct gctcaacgcg ctgctgcacg tgatcgtcgc
     1021 cgaggggctc gtcgatcccg tcttcatcgc cgagcgcacg accggttacg ccgaactcga
     1081 gcgcaacgtg cgcggctaca gccccgaagc gatggcgctc gtatgtggca tcgaggccga
     1141 aacgatccgc gaggtcgcgc gactctacgc gaactcgaag gcgtcgatga tcctgtgggg
     1201 catgggcatc agccagcatg tgcacgggac cgacaacgcg cgctgcctga tcgcgctagc
     1261 gctcgccacc gggcagatcg ggcgacccgg caccgggctg cacccgctgc gcggccagaa
     1321 caacgtgcag ggcgcatcgg atgcgggcct gatcccgatg atgtaccccg actatcgccg
     1381 cgtcgacgac gccgaggcgc gcgcgcattt cgagcgcgcc tggggcatgt cgctcgatcc
     1441 gcggcccggt ctcacggtgg tggaggtggt gcgcgccgcc ctgcgcggcg aggtgcgtgg
     1501 gatgtacatc ctgggcgaga acccggcgat gagcgacccg gacgtcaacc atgcgcgcgc
     1561 ggcgctggcg agcctcgagc atctcgtggt gcaggacatc ttcctgaccg agaccgccgc
     1621 gctcgccgat gtcgtgctgc cggccactgc gtttcccgag aagaccggaa gtttcacgaa
     1681 caccgaccgc acggtgcagc tgggccggca ggcgatcgat ccgccgggtg acgcgcgcca
     1741 ggatctgtgg atcatcgagc agatcgccgc gcgcctcggc ctcgagtggc gctacgccga
     1801 tgtcggcgcc gtcttcgacg agatgcgccg caacatgccg agcctcttcg gcatcacctg
     1861 ggagcggctc gggcgcgagg gcgccgtcac ctacccgtgc accgaagagg gcgcgcccgg
     1921 cgagccggtg gtgttccggc acgacttccc gacgtcgtcg ggacgcgcgc gcttcgtgcc
     1981 tgccgacatc gtgccggccg acgagcggcc cgacgccgat tacccgctgg tgctcatcac
     2041 cggccggcag ctcgagcact ggcacaccgg cagcatgagc cgccgcgcga gcgtgctcga
     2101 cgcgctcgag cccgacccgg tggcgatgct gcatccgagc gacctcgccg cgctcggcgc
     2161 gcggcccggg gacatcatca cgctgcggtc gcggcgcggc gaagtctcgc tctacgcgcg
     2221 cgccgacgcc tcgtcgaccc agggcgcggt gttcgtgccg ttctgctact acgaggccgc
     2281 gatcaatcgg ctcaccaatc cggcgctcga tccgaccgcg aagattccgg agttcaaata
     2341 ctgcgcggtg cgggcgctcc ggggcggggc cgagccgatg cagttgagtt tcgggggcgg
     2401 ccgggcgctc gaacgcgcgg aagattcggc gaaaccggtc gcgggctgat caggcgattc
     2461 gcgccatgtc gcgcagtacc gtcgggccga cgcgctgctc gatttcctcg agcatcggcc
     2521 ggttccagcc gagcccgaac atcgcttcgg cgacgatgaa cataggcccg acaagcagcc
     2581 cgacgaggtc gtcgacgaac accggcttct tgccttcgta ccaatggccg acgaactgga
     2641 tcaaccagcc gacgacgaag atacccacgc cccaggcaag ccacgccgcg atgccggcgg
     2701 gggcgaggct gtgtgcgagc cgcatcagga cgcccacggc ggcgccgacc gcgagaccga
     2761 gaaccaggtt gccacgcgtc aggtaccagg cggcggcgag cgcaaacgcg accccggccg
     2821 gggtgacgga aattccgccg atcggcagga cgggtcgcgc gagcagcacg ccgaccgcga
     2881 acacgatcat cggcacgccg atgaagtggc tgacgatgtt gcggcggtcg cggtggtagg
     2941 cggcgtactg gctcagcaag tcggtggcgg tgcgcatgtg aggctccggc atttcgtcgc
     3001 ctgaaatggt aagccaagtc cgctgcgatg accacggcgc gccgccccgg ccgaggcgaa
     3061 tgcccggttt cgcatcccta caatcgggcg tagccttgca agggacacga tgagcatcaa
     3121 gagcgacaag tggatccgcc gcatggcgga aacgaccggg atgatcgagc cgttcgagcc
     3181 gcgccaggtg cgcgaggccg ccgacggccg ccgcatcgtc agctacggca cttcgagcta
     3241 cggctacgac atccggtgcg cgcccgaatt caaggtcttc acgaacatct acagcaccgt
     3301 cgtcgatccg aagaacttcg acgagaagag cttcgtcgac atcgcggccg acgtctgcgt
     3361 gatcccgccc aacagcttcg cgctggcgcg cacggtcgag tatttccgca ttccgcgcaa
     3421 cgtgctgacg atctgcctgg gcaagagcac ctatgcgcgc tgcggcatca tcgtcaacgt
     3481 gacgcccttc gagcccgagt gggagggctt cgtgaccctc gaattcagca acacgacgcc
     3541 gctgccggcc aagatctacg cgggcgaagg ctgtgcccag gtgatcttct tcgagagcga
     3601 cgaggtctgc gaaaccagct acaaggatcg cggcggtaag taccagggcc agcagggcgt
     3661 caccctg
//
LOCUS       DASVHM010000364         2732 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_313375, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000364 DASVHM010000000
VERSION     DASVHM010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2732
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313375"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..465
                     /locus_tag="VF308_06885"
     CDS             <1..465
                     /locus_tag="VF308_06885"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012365474.1"
                     /note="catalyzes the formation of arginosuccinate from
                     citrulline and aspartate in arginine biosynthesis; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEX7436411.1"
                     /translation="EAPGLALLFIAYERLVTGIHNEDTIEQYRDHGRRLGRLLYQGRW
                     FDPQAIMLRETAERWVARAITGEVTIELRRGNDYSIMNTESPNLSYKPERLTMEKGAS
                     SFSPQDRIGQLTMRNLDIADTREKLLAYAKAGLLTAGPGSSLPRLKGGGEGE"
     gene            complement(604..1620)
                     /gene="murB"
                     /locus_tag="VF308_06890"
     CDS             complement(604..1620)
                     /gene="murB"
                     /locus_tag="VF308_06890"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEX7436412.1"
                     /translation="MQIDAGVNLKPYNTFGLPAVAKTLVRITSDADVRCVVDDKVLGR
                     APKFILGGGSNIILTRDMPQVVLKVEVRGMRIVEERPDAWIVEAGAGESWHDFVDFTL
                     DQGWPGLENLALIPGTVGAAPVQNIGAYGVELKERFESLDAVDLVTGRSVTLGPQTCA
                     FAYRDSVFKHSLAGRSLITRVRFRVPRPWQPVLGYLELQKKMSETGIDSPNARQIFDW
                     VVAIRRAKLPDPAAIGNAGSFFKNPVVTPEQCRDIIGRDPEIVHYPMPDGSVKLAAAW
                     MIDACGWKGKSVGQAGVYERQALVLVNRGAAIGSEVMTLSRAIQESVYGRFGIRLEHE
                     PVVV"
     gene            1687..2175
                     /locus_tag="VF308_06895"
     CDS             1687..2175
                     /locus_tag="VF308_06895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011805906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEX7436413.1"
                     /translation="MPSFDTVLDPDLVEVRNAVDQSAKEIGTRFDFKGSSSKVELKDK
                     EITLFADNEFQLGQVLDILIAKLSKRNVDARFLDRGAKIEKIGGDKVKQLVVVRSGID
                     AETAKKLQTTIKQSKLKVQASIQGDTVRVVGAKRDDLQAAMALIRKEIADQPLSFDNF
                     RD"
     gene            2180..>2732
                     /locus_tag="VF308_06900"
     CDS             2180..>2732
                     /locus_tag="VF308_06900"
                     /inference="COORDINATES: protein motif:HMM:TIGR02281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="retropepsin-like aspartic protease"
                     /protein_id="HEX7436414.1"
                     /translation="MKGLAAVAALLCAAGAAAQTVSMGGSLGSNALLVIDGKPKNVAV
                     GTTVDGIRLVSVTGNEAVVEVKGKRMSLRLGDAQVNLGGKGSEGSGRQIVLTAESGGH
                     FFANGSINGKSVRFVVDTGATSVSMSADEADRLGIDYKNGPRGMARTANGVVPMYQAS
                     LASLRIGDVQVYNVQATVVPAPMG"
BASE COUNT          466 a          914 c          942 g          410 t
ORIGIN      
        1 gaggcacccg gcctggcgct cctcttcatc gcctacgagc ggctcgtcac cggcatccac
       61 aacgaggaca cgatcgagca gtaccgcgac cacggccgcc gcctcggccg gctcctctac
      121 caggggcgtt ggttcgaccc gcaggcgatc atgctgcgcg agaccgccga gcgctgggtc
      181 gcgcgtgcga tcaccggcga ggtgacgatc gagctgcgcc gcggcaacga ctactcgatc
      241 atgaataccg agtcgcccaa cctcagctac aagcccgagc ggctgacgat ggaaaagggc
      301 gcgtcgagct tctcgccgca ggaccggatc ggccagctga cgatgcgaaa cctcgacatc
      361 gccgacacgc gcgagaagct gctcgcttat gcgaaggccg gtctgctcac tgccgggcca
      421 gggtcatcgc tgccgcgttt gaagggcgga ggcgaaggcg agtgatgctc atggcttgat
      481 aggtcgaccg cgttcaagcc gcgggcggct ggccagtgac gcttcgctgc ccgaccgcgg
      541 ctttgcgcgc tcggtcgtcg cagcggcggc gatcgcagcg cgttcaagcg gacgacgcga
      601 tcgtcacacg accaccggct cgtgctcgag gcggatgccg aagcggccgt agacgctttc
      661 ctggatcgcg cgcgagagcg tcatcacctc cgagccgatg gcggcgccgc ggttgacgag
      721 gacgagcgcc tggcgctcgt agacgccggc ctggccgacc gactttccct tccagccgca
      781 ggcgtcgatc atccaggcgg cggcgagctt gacgctgccg tcgggcatcg ggtagtggac
      841 gatctccggg tcgcggccga tgatgtcgcg gcactgctcg ggcgtgacga ccgggttctt
      901 gaagaagctg cctgcgttgc cgatcgccgc cgggtcgggc agcttggcgc ggcggatcgc
      961 gaccacccag tcgaagatct ggcgcgcgtt gggcgagtcg atgccggttt cgctcatctt
     1021 cttctgcaac tcgaggtaac cgagcaccgg ctgccacggc cgcggcactc ggaagcgaac
     1081 gcgcgtgatc aggctccggc ccgcgagcga atgcttgaat acgctgtcgc gataggcgaa
     1141 agcgcaggtt tgcggaccga gcgtgacgct gcggccggtg acgagatcga cggcgtcgag
     1201 cgactcgaag cgctccttca gctcgacacc gtaggcgccg atgttctgca ccggcgccgc
     1261 gccgacggtc cccgggatga gggcgaggtt ctcgagcccc ggccagccct ggtcgagggt
     1321 gaagtcgaca aaatcgtgcc agctctcgcc cgcccccgcc tcgacgatcc aggcgtcggg
     1381 ccgctcctcg acgatgcgca tgccgcgcac ctcgaccttg agaacgacct gcggcatgtc
     1441 gcgcgtgagg atgatgttgc tgccgccgcc gaggatgaac ttgggcgcgc ggccgagcac
     1501 cttgtcgtcg acgacgcagc gcacgtcggc gtcgctcgtg atgcgaacga gcgtcttggc
     1561 gaccgcgggc aggccgaacg tgttgtaggg tttgaggttc acccccgcgt cgatttgcat
     1621 gggagaattt tggcccataa gcgcgcgtgc cggggcttcg ccggcggccg ttgggagagt
     1681 tcgcagatgc ccagcttcga taccgtcctc gaccccgacc tggtcgaggt gaggaacgcc
     1741 gtcgaccaga gcgcgaagga gatcggcacg cgcttcgact tcaagggctc gtcgtcgaag
     1801 gtcgagctca aggacaagga gatcacgctc ttcgccgaca acgagttcca gctcggccag
     1861 gtgctcgaca tcctgatcgc caagctgagc aagcgcaacg tcgacgcgcg cttcctcgac
     1921 cgcggcgcca agatcgagaa gatcggcggc gacaaggtca agcagctcgt cgtcgtgagg
     1981 agcggcatcg acgccgagac ggcgaagaag ctgcagacga cgatcaagca gagcaagctc
     2041 aaggtgcagg cttccatcca gggcgacacg gtgcgcgtcg tcggcgccaa gcgcgacgac
     2101 ctgcaggcgg cgatggcgct gatccgcaag gaaatcgccg accagccgct ctcgttcgac
     2161 aacttccgcg actgagccga tgaagggcct cgccgccgtc gccgccttgc tctgtgccgc
     2221 cggcgctgcc gcgcagacgg tgtcgatggg cggcagcctg ggcagcaacg cgctcctcgt
     2281 catcgacggc aagccgaaga acgtcgccgt cggcacgacg gtcgacggca tccgcctggt
     2341 gagcgtcacc ggcaacgagg cggtcgtcga ggtgaagggc aagcgcatga gcctgcgcct
     2401 gggcgatgcg caggtgaacc tcggcggcaa gggcagcgag ggctcggggc gccagatcgt
     2461 cctcaccgcc gagagcggcg gccacttctt cgccaacggc tcgatcaacg gcaagagcgt
     2521 tcgcttcgtc gtcgacaccg gcgcgaccag cgtctcgatg agcgccgacg aggccgaccg
     2581 cctcggcatc gactacaaga acggcccgcg cggcatggcg cgaaccgcca acggcgtcgt
     2641 gccgatgtac caggcgtcgc tcgcctcgct gcgcatcggc gacgtccagg tctacaacgt
     2701 ccaggccacc gtcgttcccg cgccgatggg ct
//
LOCUS       DASVHM010000365         1941 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_388227, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000365 DASVHM010000000
VERSION     DASVHM010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388227"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..897)
                     /locus_tag="VF308_06905"
     CDS             complement(<1..897)
                     /locus_tag="VF308_06905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX7436415.1"
                     /translation="MSLHFHPLRVKSVRPDTDEAVIVSFEVPEAAAGEFRFTHGQHLT
                     VRQSLEGVEHRRSYSICAGVEDGELRVGVRKVPGGVFSTWINERLKPGDTLQVMTPQG
                     RFFVPLAPAQARHYLGIAGGSGITPILSIMKTVLAAEPLSHFTLIYANRRQRSTMFME
                     EIEDLKNRYLTRLVLHLVFSQEQMDVPLNTGRLSRDKLAEFIGPLIDPSSIDHAFICG
                     PFGMNDEAEAAILAAGVPAEHIHVERFGIPVPAGALPPKQEVRAGDAAQARIVIVRDG
                     LSREIDFRSEHGNILEAAAQAGL"
     gene            complement(911..1441)
                     /gene="paaD"
                     /locus_tag="VF308_06910"
     CDS             complement(911..1441)
                     /gene="paaD"
                     /locus_tag="VF308_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016449340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaD"
                     /protein_id="HEX7436416.1"
                     /translation="MSAVATPTAVEARLARAWDVLDGVLDPEVPVVSVRDLGIVRDVL
                     AEGEGLVVVVTPTYSGCPATEVIEESIRVALDDAGLGPATVRMQRAPAWTTDWMSAEG
                     RRKLREYGIAPPGPADPEAGVTMRFMPRRAAVKLACPRCESANTERISAFGSTACKAL
                     YRCLACGEPFEHFKAI"
     gene            complement(1438..>1941)
                     /gene="paaC"
                     /locus_tag="VF308_06915"
     CDS             complement(1438..>1941)
                     /gene="paaC"
                     /locus_tag="VF308_06915"
                     /EC_number="1.14.13.149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016449339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaC"
                     /protein_id="HEX7436417.1"
                     /translation="LVELPRGDFAQTVLRNFVLATFLKLLWQRLLGSGDAELAAIAGK
                     AVKEARYHQQHAGDWVLRLGGGTDESLRRLQAAVLALWPYVPEMFEADAVDEQALRLG
                     LGPRWADLQAEWMTEVAPVLREAGIEAPAVRAFRSTGKQGVHSEHMGYILAEMQYLQR
                     SHPGGVW"
BASE COUNT          304 a          679 c          666 g          292 t
ORIGIN      
        1 gagcccggct tgtgccgcgg cttcgaggat gttgccgtgt tcgctgcgga aatcgatctc
       61 gcggctcagc ccgtcgcgga cgatcacgat gcgcgcctgc gcggcgtcgc cggcgcgcac
      121 ttcctgcttc ggcggcagcg caccggccgg gaccggaatg ccgaagcgtt cgacatggat
      181 gtgctcggcc gggacgcccg ccgcaaggat cgcggcttcg gcttcgtcgt tcatgccgaa
      241 cggcccgcag ataaaggcgt ggtcgatcga actcgggtcg atcagcggcc cgatgaattc
      301 ggccagcttg tcgcggctta ggcgcccggt gttgagcggc acgtccatct gctcctgcga
      361 gaacacgagg tgcaggacga ggcgcgtcag gtagcggttc ttcaggtcct cgatctcttc
      421 catgaacatg gtcgagcgct ggcgccggtt cgcgtagatc agcgtgaagt gcgacagcgg
      481 ctcggccgcc agcacggtct tcatgatcga gaggatcggc gtgatgccgc tgccgccggc
      541 gatgccgagg tagtggcgcg cctgagccgg cgcgagcggc acgaagaagc gcccttgcgg
      601 cgtcatcacc tgcagcgtgt cgccgggctt gaggcgctcg ttgatccagg tcgagaacac
      661 gcccccgggc accttgcgca cgccgacgcg caactcgccg tcctcgacgc cggcgcagat
      721 cgagtacgag cgacggtgct cgacgccctc gagcgactgg cgcaccgtga gatgctggcc
      781 atgggtgaaa cggaactcgc cggcggcggc ctcgggtact tcgaagctga cgatcaccgc
      841 ctcgtccgta tcgggccgga cgctcttgac ccgaagcgga tgaaaatgaa gactcatgat
      901 caggcgccgc ctagatcgcc ttgaaatgct cgaaaggctc gccgcaggcc agacaccggt
      961 agagcgcctt gcacgcggtc gagccgaagg ccgagatgcg ctcggtgttc gcgctctcgc
     1021 agcgcggaca ggcgagcttg accgcggcgc gccgcggcat gaagcgcatc gtgacgcccg
     1081 cctcggggtc ggccggtccg ggcggcgcga tcccgtactc gcgcagcttg cggcgccctt
     1141 cggcgctcat ccaatcggtc gtccaagccg gcgcccgctg catccgcacc gtggccgggc
     1201 cgagacccgc gtcgtcgagc gcgacgcgaa tgctctcttc gatgacctcg gtcgcagggc
     1261 agccggagta cgtcggcgtg acgacgacga cgaggccctc accttcggcc agcacatcgc
     1321 ggacgatgcc gagatcgcgc accgagacca ccggcacctc cggatcgagc acgccatcga
     1381 ggacgtccca ggcgcgcgcg aggcgcgctt cgacagcagt gggcgtcgcg accgcgctca
     1441 ccacacgccc cccggatggc tgcgttgcag atattgcatc tcggcgagga tgtagcccat
     1501 gtgctcgctg tgcacaccct gcttgccggt gctgcgaaag gcgcgcacgg caggcgcctc
     1561 gatgcccgcc tcccggagca ccggggccac ttccgtcatc cactcggcct ggagatcggc
     1621 ccagcgcggc ccgaggccga gccgcagcgc ctgttcgtcg accgcgtcgg cctcgaacat
     1681 ctccggcacg tagggccaga gcgccagcac cgcggcctgc agccggcgca gcgattcgtc
     1741 ggtgccgcca cccagccgca ggacccagtc gcccgcatgc tgctggtggt agcgcgcctc
     1801 cttcacggcc ttgccggcga tcgccgcgag ttctgcatcg ccggagccga ggagccgttg
     1861 ccagagcagc ttcaggaacg tcgcaaggac gaagttgcgc agcaccgtct gcgcgaagtc
     1921 gccgcgcggc agctcgacca g
//
LOCUS       DASVHM010000366         4891 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_313516, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000366 DASVHM010000000
VERSION     DASVHM010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4891
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313516"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..803
                     /locus_tag="VF308_06920"
     CDS             <1..803
                     /locus_tag="VF308_06920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436418.1"
                     /translation="VATWLFLAGSTVLLAATLDVLRRQRALFMLTLAIGAACLVVGNA
                     QWAFGRAPAEVVPWWLAFLVLTIAGERLELSRFLPPSPVARHAFALLLLVIGAGLVAG
                     RAPWGPPLFGAGLLGLAAWLLKQDIARRTVRGRGLTRFIAICLLSGYGWLAVGAVLWL
                     GGAAGAPGSNAHDAALHAITLGFVFSMVFGHAAIILPAVTKFAVPYHPTFYVPLALLQ
                     ASLLVRLGGDAAGRIDWTRAGAWLNAAALAAFLLGTLGAVLRGRRKSI"
     gene            complement(855..3764)
                     /locus_tag="VF308_06925"
     CDS             complement(855..3764)
                     /locus_tag="VF308_06925"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005875936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HEX7436419.1"
                     /translation="MPKIRESAAATTLHSLPPQDISTEVLIEKYAKGEETSIEAVNRR
                     VARALAQAEPAEQRAHWEERFAEALREGFLPAGRIQSAAGSGLAATLINCFVQPIGDS
                     IAQVDDGHPGIYTALTEAAETMRRGGGVGYDFSRIRPRGAWVGSTQSSASGPVSYMRV
                     FDRSCETVESAGARRGAQMGVLRCDHPDIDDFTRAKDSGDLKNFNISVGVTDAFMEAV
                     QGDTEIELVHRAEPGMAQKEAGAYQQAQGDGGGVWVYRKRRARELWDQIMRSTYDHAE
                     PGVLFLDQINRDNNLSYCESIAATNPCAEQPLPPYGCCCLGSIDLTRFVHAPFEDDAH
                     FDEAGFVKVAQVATRMLDNVLDVTLWPLPQQSEEARSKRRIGLGFTGLGDALIMLNLR
                     YDGAPARAMARRIAELMRDAAYDASVELACERGAFPLFNADLYLSGTTFASRLSQALR
                     DRIRAHGLRNSHLLSIAPTGTISLAFADNASNGIEPAFSWSYTRRKRMADGSFKEHAV
                     EDHAWRLYRHLKGAAAPLTPAFVTALELSAQAHESMVAAVAPCIDTAISKTVNVPADY
                     PYADFQHLYVEAWQSGLKGLATYRPNSVLGAVLSATPQAIAPAAPLQIDGANRRLALD
                     RLPAPVLSSLRWPGRPELPAGNAAWTFMVHHPFGDFALFVGEVPGAEGGPPQPFEVWV
                     NGAEQPRGLGALAKTLSMDLRANDPAWLQLKLEALATVAEEHAFEMPFPPHGERRLFP
                     GVVAATAAVVRWRCEQLKALPRFGRATPTPVMDAMFSVEEPHTGPSGTLAWAVDIDNP
                     ATGEAFTLTLKEVTLPGADPTTMTRPCAIGFSGNYPRALDGLARLLSLDMRVIDPAWI
                     GMKLRKLLNYAEPLGHFMAFVPGLPHRERRQQTWPSTVAYMARLVIHRYAMLGVLDEA
                     GFPIREMGVLESASKREQRMPTMAGRVCTECGNAALIHKDGCEFCTACGATGQCG"
     gene            complement(3841..>4891)
                     /locus_tag="VF308_06930"
     CDS             complement(3841..>4891)
                     /locus_tag="VF308_06930"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nitronate monooxygenase family protein"
                     /protein_id="HEX7436420.1"
                     /translation="ISSVDLRRHHPDLMERTRDLAPGQAATQAAKIAINDANLEALER
                     EIVAARRLAGGRGMLAINVMRAVSEYAPSVTRSLECGIDAVVVGAGLPLDLPDLAKDH
                     PKALLIPILSDARGVQLVLRKWERKKRIPDAVIIEHPGLAGGHLGAAKVADLHDPRFD
                     FENVIPQVVGLLRDAGIESEVPVIAAGGIRSFADIARLQALGAAAVQLGTPFAVTLEC
                     DAHAEFKRVLADAGEDDLVEFTSVAGLPARAVNTPWLRNYLKAESRLQSVAHVKPRCT
                     LAFDCLGQCGLRDGLASWGQFCIDKQLAAALRGDLKKGLFFRGAGALPFGNQIRGVGE
                     LMTRMLTAPQPAFAA"
BASE COUNT          655 a         1665 c         1778 g          793 t
ORIGIN      
        1 cggtcgcgac ctggctcttt ctcgccggca gcacggtgct gctcgccgcc acgctcgacg
       61 tgctgcgccg gcagcgcgcc ctcttcatgc tgacgctggc gatcggcgcc gcgtgtctcg
      121 tggtcggtaa cgcgcagtgg gcgttcggcc gcgcgccggc cgaggtcgtt ccgtggtggc
      181 tcgccttcct cgtgctgacc atcgccggcg agcggctgga gctgtcgcgc ttcctgccgc
      241 catcgccggt ggcgcgccat gcctttgcgc tgctgctgct cgtgatcggc gccggcctgg
      301 tcgcggggcg cgcgccctgg ggtccgccct tgttcggcgc cggcctgctc ggcctggccg
      361 cgtggctgct caagcaggac atcgcgcgcc gcaccgtgcg cggccgcggc ctgacccgat
      421 tcatcgcgat ctgtctgctg agcggctacg gctggctcgc cgtcggcgcg gtgctgtggc
      481 tcggcggtgc ggcgggcgcg cccggatcga acgcgcacga cgcggcgctg cacgcgatca
      541 cgctcggctt cgtcttctcg atggtgttcg gccacgccgc catcatcctg ccggcggtca
      601 cgaaattcgc cgtgccctac cacccgacgt tctacgtgcc gctcgcgttg ctgcaggcgt
      661 cgctgctcgt gcgcctcggc ggcgatgccg cgggccggat cgactggacg cgagccggcg
      721 cctggctcaa cgcagcggcg ctggcggctt tcctgctcgg cacgctgggc gcggtgctgc
      781 gcggccggcg caagtcgatc tgattccggc cggttcgcgt ccttgcggag gtcgggttcg
      841 cctcagggcc cgcgtcagcc gcactgcccg gtcgcaccgc acgccgtgca gaactcgcag
      901 ccgtccttgt ggatgagcgc cgcattgccg cactcggtgc agacgcgtcc tgccatcgtc
      961 ggcatccgct gctcgcgctt gctcgcggat tcgagcactc ccatctcgcg gatcggaaag
     1021 cccgcttcgt cgagcacgcc aagcatggcg tagcggtgga tgacgaggcg cgccatgtag
     1081 gccacggtgg atggccacgt ctgctggcgc cgctcccggt gcggcaaccc gggcacgaac
     1141 gccatgaagt ggccgagcgg ctcggcgtag ttgaggagct tgcgcagctt catgccgatc
     1201 caggccggat cgatgactcg catgtcgagc gagagcagcc gcgccaggcc gtcgagggcg
     1261 cgcggatagt tgccggagaa gccgatcgcg cagggccgcg tcatcgtcgt cgggtcggcg
     1321 cctggcaggg tcacttcctt cagcgtcagc gtgaaggcct cgccggtcgc cgggttgtcg
     1381 atgtcgacgg cccaggccag cgtgcccgac ggcccggtgt gcggctcctc gacgctgaac
     1441 attgcgtcca tcaccggtgt cggcgtggcg cggccgaacc gcggcagcgc cttcagctgc
     1501 tcgcagcgcc agcgcacgac cgccgcggtc gccgccacga cgccggggaa caggcgccgc
     1561 tcgccgtgcg gcgggaacgg catctcgaag gcgtgctcct cggcgacggt ggcgagcgct
     1621 tcgagcttga gctgcagcca cgccgggtcg ttggcgcgca ggtccatgga gagcgtcttg
     1681 gcaagggcgc cgaggccgcg cggctgctcg gcgccgttga cccagacttc gaagggctgc
     1741 ggcgggccgc cctcggcgcc gggcacctcg ccgacgaaga gcgcgaaatc gccgaacgga
     1801 tggtggacca tgaacgtcca cgcggcattg ccggccggca gctccggccg gcccggccag
     1861 cggagggaag acagcaccgg ggccggcagg cgatcgagcg cgaggcggcg gttggcaccg
     1921 tcgatctgca gcggcgccgc cggggcgatg gcctgcggcg ttgcgctcag caccgcgccg
     1981 aggacgctgt tcggccggta ggtggcgagc cccttcagcc cggactgcca ggcctcgacg
     2041 tagagatgct ggaagtcggc atagggatag tcggccggca cattgacggt cttcgagatc
     2101 gcggtgtcga tgcagggcgc gaccgccgcg accatcgact cgtgcgcctg cgcactcagc
     2161 tcgagggcgg tgacgaacgc cggcgtcagc ggcgccgccg cgcctttcag gtgacggtac
     2221 agccgccagg catggtcctc gaccgcgtgt tccttgaagc tgccgtcggc cattcgcttc
     2281 ctgcgcgtgt agctccagct gaatgccggc tcgattccgt tgctggcgtt gtcggcgaag
     2341 gccaggctga tggtgccggt cggcgcgatc gagagcaggt gcgagttgcg caggccgtgc
     2401 gcgcggatgc ggtcgcggag cgcctgcgac aggcgcgagg cgaaggtcgt gccgctcagg
     2461 tagaggtcgg cgttgaagag cgggaaggca ccgcgctcgc acgcaagctc gaccgacgcg
     2521 tcgtaggccg cgtcgcgcat cagctcggcg atgcggcgcg ccatcgcccg cgcgggtgcg
     2581 ccgtcatagc ggagattgag catgatcagc gcgtcgccca ggccggtgaa gccgaggccg
     2641 atacggcgct tgctgcgcgc ttcctcgctc tgctgcggca gcggccagag ggtgacgtcg
     2701 agcacgttgt cgagcatccg ggtcgccacc tgcgcgacct tgacgaagcc ggcctcgtcg
     2761 aagtgggcgt cgtcttcgaa gggcgcgtgc acgaagcgcg tcaggtcgat cgagccgagg
     2821 cagcagcaac cgtagggcgg cagcggctgt tcggcgcagg gattggtcgc ggcgatgctt
     2881 tcgcagtagg agagattgtt gtcgcgattg atctggtcga ggaagagaac gccgggctcg
     2941 gcatggtcgt aggtcgaccg catgatctgg tcccacagct cgcgtgcgcg gcgcttgcgg
     3001 tagacccaga cgccgccgcc gtcgccctgc gcctgctggt aggcgccggc ctccttctgc
     3061 gccattcccg gctcggcgcg gtgcaccagc tcgatctcgg tgtcgccctg caccgcctcc
     3121 atgaaggcat cggtcacgcc gaccgagatg ttgaagttct tcaggtcgcc ggagtccttg
     3181 gcgcgggtga aatcatcgat gtccgggtga tcgcagcgca gcacgcccat ctgggcgccg
     3241 cgccgcgcgc cggccgactc gacggtctcg cacgagcggt cgaagacgcg catgtagctg
     3301 accggcccgg aggcgctgct ctgcgtgctg ccgacccacg cgccgcgcgg ccggatccgc
     3361 gagaagtcgt agccgacgcc gccgccgcgc cgcatcgtct cggccgcctc ggtcagcgcg
     3421 gtgtagatgc cgggatgacc gtcgtcgacc tgggcgatcg agtcgccgat cggctggacg
     3481 aagcagttga tgagcgtcgc cgcgaggccg gaaccggccg ccgactggat ccgacccgcc
     3541 ggcaggaagc cctcgcgcaa ggcctcggcg aagcgttctt cccagtgggc ccgctgctcg
     3601 gccggctcgg cttgcgcgag cgcacgcgcc acgcgccggt tcactgcctc gatcgaggtc
     3661 tcttcgccct tcgcgtactt ctcgatcagc acttcggtgc tgatgtcctg tggcggcagg
     3721 ctgtgcagcg tcgtcgccgc ggcgctctct cggattttcg gcatgggatt ggggtgggtt
     3781 ggcgcgcagt ctcgacagga agttgcggtc gtgggtcctc ggcggcgcgc gctcgggcgg
     3841 tcaggccgcg aaggcgggtt gcggtgccgt caacattcgc gtcatcagct cgccgacgcc
     3901 gcggatctgg ttgccgaacg gcagggcgcc ggcgccgcgg aagaacagcc cctttttcaa
     3961 gtcgccgcgc aacgccgccg cgagttgctt gtcgatgcag aactgacccc agctcgccag
     4021 tccgtcgcgc aatccgcatt ggcccaggca gtcgaacgcg agggtgcatc gcggcttcac
     4081 gtgggccacg gattggagcc gggattcggc cttcaggtag ttccgcaacc agggcgtgtt
     4141 caccgccctt gccggcaacc ccgccacgct cgtgaactcg acgagatcgt cttcgccggc
     4201 gtcggcgagc acgcgcttga actcggcgtg ggcgtcgcat tcgagcgtga ccgcaaaggg
     4261 cgtgccgagc tggaccgcgg cggcgccgag cgcctgcaat ctggcgatgt cggcaaacga
     4321 gcgaatgccg ccggcagcga tcaccggcac ttcgctctcg atgccggcat cgcgaagcag
     4381 gccgaccacc tgcgggatga cgttctcgaa gtcgaagcgt ggatcgtgaa ggtccgcgac
     4441 cttcgcagcg ccgagatggc cgccggccag gccggggtgc tcgatgatca cggcgtcggg
     4501 aattcgcttc tttcgctccc atttccgcag cacgagttgc acgccgcgcg cgtccgagag
     4561 aatgggaatg agcagtgcct tggggtggtc cttggcgagg tccggaagat cgagcggcag
     4621 gccggcgccg acgaccaccg cgtcgatccc gcactcgagg gagcgcgtga ccgaaggagc
     4681 gtactcgctg acggcgcgca tgacgttgat ggccagcatg ccccgaccgc cagcgagtcg
     4741 acgggcggcg acaatttcgc gctccagtgc ctccagattg gcatcgttga tggcgatctt
     4801 ggccgcctgc gtggccgcct gcccgggggc gaggtcgcgc gtcctttcca tcagatccgg
     4861 atgatggcgg cgcaggtcca ccgaggaaat c
//
LOCUS       DASVHM010000367         1623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_25795, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000367 DASVHM010000000
VERSION     DASVHM010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25795"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..1301
                     /locus_tag="VF308_06935"
     CDS             69..1301
                     /locus_tag="VF308_06935"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase family
                     protein"
                     /protein_id="HEX7436421.1"
                     /translation="MGVHVIKMPDIGEGIAEVELVAWHVKPGDAVTEDQALADVMTDK
                     ATVEIPSPVAGRVLALGGEVGQMLAVGADLISIELEGAGEPLAAPAAIPVSAPPSVAA
                     PVARSVESESPASPDRPIASPAVRARAWELGVDLKDVPASGAAGRIMRRDLDAYLASG
                     AARSLPPVPPSPRGAAPPEETHTEKIVGLRRKIAQKMQEAKRRIPHYTYVEEVDVGEL
                     QALRALLNAKWGARRGHLTLLAFLIRALVLAVREFPQVNARFDDEAGVITRHDAVHVG
                     IATQTPAGLMVPVLRDAQMRDLWSSAAEVVRLSDAARSGKAVRDELVGSTITISSLGR
                     LGGIMSTPVINHPEVAIVGVNRIALRPAIRDGAVVARQLMNLSSSFDHRVVDGMQAAA
                     FVQCLRDRLEHPATLFVE"
     gene            complement(1302..>1623)
                     /locus_tag="VF308_06940"
     CDS             complement(1302..>1623)
                     /locus_tag="VF308_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HEX7436422.1"
                     /translation="SPIDVALKFELVKGAHLRSPRYVTPGPVTNHFDRKGYEVTTGIG
                     PDLMAGARMAVSEMIELLSRRHGYSPVDAYMLCSVCADLRISSIVDVPNWVVSYYFPR
                     VVLE"
BASE COUNT          268 a          525 c          579 g          251 t
ORIGIN      
        1 ggagtgggcc tacttccccg gccccgcgcg cgtggccgcc gcattcaaac gcgcgatgga
       61 aaaataagat gggcgtgcat gtaatcaaga tgccggatat cggcgaaggc atcgccgaag
      121 tcgaactggt ggcgtggcat gtgaagcccg gcgatgccgt gactgaggac caggcgctgg
      181 ccgatgtgat gaccgacaag gcgacggtcg agattccgtc gccggtggcc gggcgggtgc
      241 tggcgctggg cggcgaggtc ggacagatgc tggcagtcgg cgccgatctg atctcgatcg
      301 agttggaggg cgcaggcgag ccgctggcgg cgccggccgc gatacctgtg tcggcaccac
      361 catccgtggc ggcgccggtc gcccggagcg tcgaatcgga gtcgccggcg tcgcccgaca
      421 gaccgatcgc ctcacccgcg gtgcgtgcac gcgcctggga gctcggcgtc gatctgaagg
      481 acgtgccggc cagcggcgcg gccggtcgca tcatgcgccg cgatctcgat gcctacctcg
      541 ccagcggcgc ggcgcgctca ttgccgccgg tgccgccgag cccgcgcggc gcagcgccgc
      601 cggaagagac gcacaccgag aagatcgtcg gcctgcgccg caagatcgcg cagaagatgc
      661 aggaggccaa gcgtcgcatt ccgcactaca cgtacgtcga agaggtcgat gtcggcgaac
      721 tccaggcgct gcgcgcgcta ctcaacgcga agtggggcgc gcggcgcggg cacctcacgt
      781 tgctggcgtt tctgatccgc gcgctcgtgc tcgcagtccg ggagttcccg caggtcaatg
      841 cgcgcttcga cgatgaagcc ggcgtgatca cgcgccacga tgccgtgcat gtgggcatcg
      901 cgacgcagac cccagccggc ctgatggtgc cggtgctgcg cgacgcgcag atgcgagacc
      961 tgtggtcgag cgccgccgaa gtcgtgcggc tgtccgacgc cgcgcgcagc ggcaaggcgg
     1021 ttcgcgacga actcgtcggc tcgaccatca cgatcagcag tctgggccgg ctcggaggca
     1081 tcatgtcgac gccggtgatc aaccaccccg aggtggcaat cgtcggcgtc aaccgcatcg
     1141 ccctgcggcc ggcgatccgg gacggcgccg tggtggcgcg gcagctgatg aacctgtcgt
     1201 cgtcgttcga tcatcgcgtg gtcgacggaa tgcaggctgc tgcgttcgtg cagtgcttgc
     1261 gcgatcgtct cgagcatccg gcaacgctgt ttgtggaatg actattccag gaccaccctc
     1321 ggaaagtagt acgagaccac ccagttcggc acgtcgacga tcgagctgat gcgaaggtcc
     1381 gcgcacacgc tgcacagcat gtaggcatcg accggcgaat agccgtggcg ccggctcagc
     1441 agctcgatca tttcggacac ggccatgcgg gcgccggcca tgaggtcggg cccgatgccg
     1501 gtcgtgacct cgtagccttt cctgtcgaaa tgattcgtga cggggcccgg cgtgacgtag
     1561 cggggcgagc gcagatgggc ccccttgacc agctcgaact tgagggccac atcgatcgga
     1621 ctc
//
LOCUS       DASVHM010000368         3165 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_25869, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000368 DASVHM010000000
VERSION     DASVHM010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3165
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25869"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1111)
                     /locus_tag="VF308_06945"
     CDS             complement(<1..1111)
                     /locus_tag="VF308_06945"
                     /inference="COORDINATES: protein motif:HMM:NF023516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3570 domain-containing protein"
                     /protein_id="HEX7436423.1"
                     /translation="MAATKAAIGLWRRLLTILGGLLGGLLGVAGARAADLPENKAEAL
                     IHSYSGGGVNAYGPAFLIRRSIFDKVALTGTYYVDAVSNASIDVVTTASPYRETRHEF
                     GLSADYAYRDALITFGLMTSHEPDYVANTGSLDVTQEVFGGMTTIAFGFTRASDQVKK
                     HNEPDFAATAKHWQYRLGATQILTPRWLMSANFEALSDDGYLGSPYRVARVFGAAVPE
                     RNPSTRSGRAIKLRLVGDLGSRDAMHVEYRYFRDTWEIKAHTAEIGYSRYFGENWLAD
                     AFYRYYTQQHALFYSDNATSETTYISRNRQLSTFNDMGLGAKLSYNLRRVPGRYDLKL
                     NGSYEYTRFKFKDFTDLRDGSLYGYASHVIQVYLSA"
     gene            complement(1098..1346)
                     /locus_tag="VF308_06950"
     CDS             complement(1098..1346)
                     /locus_tag="VF308_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4266 domain-containing protein"
                     /protein_id="HEX7436424.1"
                     /translation="MTAARTLAVVAALAASLLGGCAVPTFPTIQPWVKPYERERLADP
                     IMKLSRDALPDKHFEHVRDVREGARGATGFQGGGCGCN"
     gene            complement(1343..1876)
                     /locus_tag="VF308_06955"
     CDS             complement(1343..1876)
                     /locus_tag="VF308_06955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEX7436425.1"
                     /translation="MNITLALRRPARRRVPGLRLAACAAFAVLAGTASSAIAPATAAP
                     DFTLHAMAGPNLRLKEQRGRVVMVNFWATWCGPCRQEMPQLNRLYEKYKSSGFVLLGV
                     NVDDDVAKAAEVVGKLGVTFPVLLDTEKTVSKLYDLSTMPSTVIIDRDGKVRYVHRGY
                     LAGYEDNYEKQIRELLK"
     gene            complement(1887..2534)
                     /locus_tag="VF308_06960"
     CDS             complement(1887..2534)
                     /locus_tag="VF308_06960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel domain-containing
                     protein"
                     /protein_id="HEX7436426.1"
                     /translation="MNNKTFRKASLATLLAAASFGSLAQSTPAGNPDQVVVPQVDRRD
                     IEKPKFPSNDFEVGLFTGTYATQNFGSSWVYGARIGYHITEDFFVEGAYGQTKVSDEL
                     FRQILPGGIFAKDTEKLSYYNLSIGYNLFPGEIFIGGRRARPSQFYIVAGVGSTKFDQ
                     QTKPTFNAGFGYRVYLADWVALQLDLRDHIFSLDLLGKRQSTQNVELTGGLSFYF"
     gene            complement(2586..>3165)
                     /locus_tag="VF308_06965"
     CDS             complement(2586..>3165)
                     /locus_tag="VF308_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436427.1"
                     /translation="DWIEIELRHTDWFRIRTEGDKVGWVSRQQLESTLTAAGSAKTFR
                     DVLLDDYLTRKVQLGAAWGHFQSEPMLKLWTSYRLSDTLSIEGTIGQVQGVFSGTDLW
                     HVDVLIEPWSDHRFSPFFGVGLGKFKNFPNQSLIGATDTNAKLAVARLGVRYYLTERF
                     VMSADYSLYTAFISDQKSTEYRAWTAGLSFFF"
BASE COUNT          513 a          946 c         1157 g          549 t
ORIGIN      
        1 tggccgagag gtacacctgg atcacgtgag aggcataccc gtacaggctg ccgtcgcgca
       61 ggtcggtgaa gtccttgaac ttgaagcggg tgtactcgta cgagccgttg agcttgaggt
      121 cgtagcggcc tgggacccga cgcaggttgt aggaaagctt ggcgcccagc cccatgtcgt
      181 tgaacgtgct cagctggcgg ttgcgcgaga tgtaggtcgt ctcgctggtc gcgttgtcgc
      241 tgtagaagag cgcgtgctgc tgggtgtagt agcggtagaa cgcgtcggca agccagttct
      301 cgccgaagta gcggctgtag ccgatctcgg cggtgtgcgc cttgatctcc caggtgtcgc
      361 ggaagtagcg gtactcgacg tgcatcgcgt cgcgcgagcc gaggtcgccg accaggcgca
      421 gcttgatcgc ccggcccgag cgcgtgcttg ggttgcgctc cggcacggcg gcgccgaaca
      481 cgcgcgcgac gcggtagggg ctgccgaggt agccgtcgtc ggagagcgcc tcgaagttcg
      541 cgctcatgag ccagcgcggc gtcaggatct gggtcgcgcc gaggcggtac tgccagtgct
      601 tggccgtggc cgcgaaatcg ggctcgttgt gcttcttgac ctggtcgctc gcgcgggtga
      661 agccgaacgc gatcgtggtc atgccgccga agacctcctg cgtgacgtcg aggctgccgg
      721 tgttggccac gtaatcgggc tcgtggctgg tcatcaggcc gaaggtgatc agggcgtcgc
      781 gataggcgta gtcggcgctc aggccgaact cgtggcgcgt ctcgcggtac gggctggccg
      841 tggtgacgac gtcgatcgag gcgttgctga ctgcgtcgac gtagtacgtc ccggtgagcg
      901 cgaccttgtc gaagatgctc ctgcggatca ggaaggccgg gccgtaggca ttgacgccgc
      961 cgccgctgta cgaatggatc agcgcctcgg ccttgttctc cggcaggtcg gcggcgcgcg
     1021 cgccggcaac gccgagcaag ccgccgagca ggccgccgag gatcgtcagc aggcgtcgcc
     1081 agaggccgat cgccgcctta gttgcagcca cagccgcccc cctggaatcc ggtcgcgccg
     1141 cgcgcgcctt cgcgcacgtc gcgaacgtgc tcgaagtgct tgtcgggcag cgcatcgcgc
     1201 gacagcttca tgatcggatc ggccaggcgc tcgcgctcgt agggcttgac ccacggctgg
     1261 atggtcggaa acgtcggcac ggcacagccg ccgagcagcg aggcggcgag cgcggcgacg
     1321 acggcgagcg tgcgcgcggc cgtcacttga gcagctcccg gatctgcttc tcgtagttgt
     1381 cctcgtagcc ggcgagatag ccgcgatgga cgtagcggac cttgccgtcg cgatcgatga
     1441 tcacggtcga cggcatcgtg ctcaggtcgt acagcttgct caccgtcttc tcggtgtcga
     1501 gcaggaccgg gaacgtgacg ccgagcttgc ctacgacctc ggcggccttg gcgacgtcgt
     1561 cgtcgacgtt gacgccgagg aggacgaagc ccgacgactt gtacttctcg tagaggcggt
     1621 tcagctgcgg catttcctgg cggcacgggc cgcaccaggt cgcccagaag ttgaccatca
     1681 cgacgcggcc gcgctgctcc ttcaggcgca ggttcgggcc ggccatggcg tgcagcgtga
     1741 agtcgggcgc ggcggtcgcc ggcgcgatcg ccgaagaggc cgttccggcg aggaccgcga
     1801 acgcggcgca ggcggcaagc cgtaaccccg ggacgcggcg gcgggcagga cgacgaaggg
     1861 ccaaggtgat gttcatgacg acgagctcag aagtagaagg acaggccgcc ggtgagctcg
     1921 acgttctgcg tgctctggcg cttgccgagc agatcgagcg agaagatgtg gtcgcgcagg
     1981 tcgagctgca gcgcgaccca gtcggcgagg tagacgcggt agccgaagcc ggcgttgaag
     2041 gtcggctttg tctgctggtc gaacttggtg ctgccgacgc cggcgacgat gtagaactgc
     2101 gacggccggg cgcgccggcc gccgatgaag atctcgcccg ggaacaggtt gtagccgatc
     2161 gacaggttgt agtacgagag cttctcggtg tccttggcga agatgccgcc cggcaggatc
     2221 tgccggaaca gctcgtcgct gaccttggtc tggccgtacg cgccctcgac gaagaagtcc
     2281 tcggtgatgt gatagccgat gcgggcgccg tagacccagc tcgagccgaa gttctgcgtc
     2341 gcgtaggtgc cggtgaacag gcccacctcg aagtcgttcg acgggaactt gggcttctcg
     2401 atgtcgcgcc ggtcgacctg cggcacgacg acttggtcgg ggttgccggc cggcgtgctt
     2461 tgagcgagcg agccgaagct cgccgcggcg aggagcgtcg ccagggatgc cttgcggaag
     2521 gtcttgttgt tcatcgtgtg tgccggttga ccgacggtct tggccgttgg ttcagaacga
     2581 agatgtcaga agaagaaaga gagccccgcg gtccaggcgc ggtactcggt cgatttctgg
     2641 tcgctgatga aggccgtgta gagcgagtag tcggcgctca tgacgaagcg ctcggtgagg
     2701 tagtagcgaa cgccgaggcg ggcgaccgcg agcttggcgt tggtgtcggt cgcgccgatc
     2761 aggctctggt tggggaagtt cttgaacttg ccgagaccga cgccgaagaa cggcgagaag
     2821 cgatggtccg accacggctc gatcagcacg tcgacgtgcc agagatcggt gcccgagaac
     2881 acgccctgca cctggccgat ggtgccctcg atgctcaacg tgtcggagag gcgatagctg
     2941 gtccatagct tcaacatcgg ctcggactgg aagtgtcccc aggccgcgcc cagctgcacc
     3001 ttgcgagtca ggtagtcatc gagaagaaca tcacgaaagg tcttggcgct gccggcggcg
     3061 gtgagcgtcg actcgagctg ctggcggctg acccagccga ccttgtcgcc ctcggtgcgg
     3121 atgcggaacc agtcggtgtg gcgcagctcg atctcgatcc agtcg
//
LOCUS       DASVHM010000369         3271 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_966226, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000369 DASVHM010000000
VERSION     DASVHM010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3271
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_966226"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..688)
                     /locus_tag="VF308_06970"
     CDS             complement(<1..688)
                     /locus_tag="VF308_06970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019573510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX7436428.1"
                     /translation="MQTLRYEIDADGIATLTFDEPGSKVNTMRLEWQHDLAEAVSQLE
                     RDKERIRGVLLASAKTTFFAGAELKGVLHLKAEDAAEGFARIEALKKSFRRLETLGRP
                     VAALLAGAALGGGWEVALAAHARFALDDPKIQFGTPEVTLGLIPGATGITKTVRLLGL
                     MAAQPYLMEGKLFDPREALELGLVQGLGDSVESLRAQALEWIAEHPDAVQPWDRKDYR
                     MPGGSPSSPKI"
     gene            complement(691..1896)
                     /locus_tag="VF308_06975"
     CDS             complement(691..1896)
                     /locus_tag="VF308_06975"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010462498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEX7436429.1"
                     /translation="MTHAMIFDAVRTPRGKGKKDGSLHEVKPVDLLAGLLVKLQKRLD
                     FDPAQLDDVVMGVVSPVGEQGSVIAKTAALKAGWDFRVAGMQINRFCASGLEAVNLAA
                     QKVASGWEDMVVAGGVESMSRVPIGSDGGAWAQDPETNFAIGFVPQGIGADLIATLGD
                     WDREDVDRFALTSQQRAAAAQAEGRFDRSVIAVEDSLGLAVLERDEFIKPRTTLEGLA
                     SLKVAFGELGAMGFDAVALARYPQVERIRHVHTAGNSSGIVDGAAAVLIGSEAKGRAM
                     GLVPRGRIVATALSGADPTIMLTGPMPATRKALAKAGLGIDDIDLFEVNEAFAVVPMR
                     FMREMGVPHEKVNVNGGAIAMGHPLGATGAMLLGTLLDELERRSLKRGLITLCVGGGM
                     GIATIVERI"
     gene            2015..2887
                     /locus_tag="VF308_06980"
     CDS             2015..2887
                     /locus_tag="VF308_06980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7436430.1"
                     /translation="MAHYRSVFQPGLFNGRVVLVTGGGSGIGRCTAHELAALGATVAI
                     IGRKIEKLERVRGEIEAAGGDCSTHACDIREEDTVRAAVAAVLERHGRIDGLVNNAGG
                     QYPSPLSAISAKGWDAVVRNNLTGGFLMARECVTQWMAEHGGAIVNIIADMWGGMPGM
                     GHSGAARAGMLNFTETAALEWAPVRSNAVAPGWIASSGLDHYPPQMTETIRGMSKLVP
                     LQRLGTESEVAAAIVFLLSPAAAFISGACLRIDGAAPNAKRIWPEVGTGGSTEPFEGF
                     HLATTPRVLKPGSQ"
     gene            2921..>3271
                     /locus_tag="VF308_06985"
     CDS             2921..>3271
                     /locus_tag="VF308_06985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7436431.1"
                     /translation="MQFTHEHEEIRRTLKRFIADEINPHVDEWEAAELFPAHEVFKKL
                     GDLGLLGLTKPTDFGGMALDYSYSVVMAEALGDINCGALPMAIGVQTDMATPALARFG
                     SDALRREFLAPSIAG"
BASE COUNT          494 a         1165 c         1108 g          504 t
ORIGIN      
        1 cgatcttcgg gctcgaaggc gagccgccgg gcatccggta gtccttgcgg tcccacggct
       61 gcaccgcgtc ggggtgctcg gcgatccact caagcgcctg ggcgcgcaag ctctcgacgc
      121 tgtctcccag accctgcacc aggccgagtt cgagcgcctc gcgcgggtcg aagagcttgc
      181 cttccatcag gtacggctgc gccgccatca ggccgaggag ccgcaccgtc ttcgtgatgc
      241 cggtcgcgcc cgggatcagg ccgagcgtca cctcgggcgt tccgaactgg atcttcgggt
      301 cgtcgagcgc gaagcgcgca tgcgccgcga gcgccacctc ccagccgccg ccgagcgcgg
      361 cgccagccag cagcgccgcg acgggccggc ccagcgtctc gaggcggcgg aagctcttct
      421 tcagcgcctc gatgcgcgcg aacccctcgg cggcgtcttc ggccttcagg tgcagcacgc
      481 ccttcagctc ggccccggcg aagaaagtcg tcttcgccga tgcgagaagc acgccgcgga
      541 tgcgttcctt gtcgcgttcg agctggctca cggcctcggc gaggtcgtgc tgccactcca
      601 gccgcatcgt gttgaccttt gaaccgggct cgtcgaaagt cagggtcgcg atgccgtcgg
      661 catcgatctc gtagcgcagg gtctgcacga tcagatcctc tcgacgattg tcgcgatgcc
      721 catgccgccg ccgacgcaca gcgtgatcag gccgcgcttc aggctgcgcc gctcgagttc
      781 gtcgagcaag gtgccgagca gcatcgcacc ggtcgcgccg agcgggtgcc ccatcgcgat
      841 cgcgccgccg ttgacgttga ccttctcgtg cggcacgccc atttcgcgca tgaagcgcat
      901 cggcaccacg gcgaaggctt cgttgacctc gaagaggtcg atgtcgtcga tgccgagccc
      961 ggccttggcg agcgccttgc gcgtcgccgg catcggcccg gtcagcatga tggtcgggtc
     1021 ggcgccggag agcgcggtcg cgacgatgcg cccgcgcggc acgaggccca tcgcccggcc
     1081 cttcgcctcg ctgccgatca gcaccgccgc ggcgccgtcg acgatgcccg acgagttgcc
     1141 ggcggtgtgg acgtggcgga tgcgctcgac ctgagggtag cgggccagcg ccaccgcgtc
     1201 gaagcccatc gcgccgagct cgccaaacgc gaccttcagc gacgcgaggc cctccagcgt
     1261 ggtgcgcggc ttgatgaatt cgtcgcgctc gaggaccgcc aggccgaggc tgtcttcgac
     1321 cgcgatcacc gaccggtcga agcggccttc ggcctgcgcc gcggcggcgc gctgttgcga
     1381 ggtgagcgcg aagcggtcca cgtcttcgcg atcccagtca ccgagggtcg cgatgagatc
     1441 ggcgccgatg ccctgcggca cgaagccgat cgcgaaattg gtctcgggat cctgggccca
     1501 ggcgccgccg tcggagccga tcggcacccg cgacatgctc tcgacgccac cggcgacgac
     1561 catgtcttcc cagccgctcg cgaccttctg cgcggccagg ttcaccgctt cgagacccga
     1621 ggcgcagaag cggttgatct gcatgccggc gacgcggaag tcccagccgg ccttgagcgc
     1681 cgcggtcttc gcgatcaccg agccctgctc gcccaccggc gagacgacgc ccatcacgac
     1741 gtcgtcgagt tgcgccggat cgaagtcgag gcgcttctgc agcttcacga gcaggccggc
     1801 gaggaggtcg accggcttga cctcgtgcag gctgccgtcc ttcttgccct tgccgcgcgg
     1861 cgtgcgcacc gcgtcgaaga tcatcgcgtg ggtcatctgc gtctccctgg attgcctcgg
     1921 gccgatgggt ggcccgattg acaggcgatt atggttcttt gatcatgatc cgaggcaacc
     1981 gggtccgcac gccggtcgat cacaatcccc gtcgatggcc cactaccgat ccgtcttcca
     2041 gcccggcctc ttcaacggcc gggtcgtgct cgtgaccgga ggcggctcgg gcatcggccg
     2101 ctgcacggcg catgaactcg cggcgctcgg cgccacggtc gcgatcatcg gccgcaagat
     2161 cgagaagctc gagcgcgtgc gcggcgaaat cgaggccgcg ggcggcgact gctcgaccca
     2221 cgcgtgcgac atccgcgagg aagacacggt gcgtgcggcc gtcgcggcgg tcctcgaacg
     2281 ccacggccgc atcgacggcc tcgtcaacaa cgccggcggc cagtacccgt cgccgctttc
     2341 ggcgatcagc gcaaagggtt gggacgccgt cgtccgcaac aacctgaccg gcggcttcct
     2401 gatggcgcgc gagtgcgtca cgcaatggat ggccgagcac ggcggcgcga tcgtcaacat
     2461 catcgccgac atgtggggcg gcatgccggg catgggccac tcgggcgcgg cgcgcgccgg
     2521 gatgctcaat ttcaccgaga cggcggcgct cgaatgggcg cccgtgcgca gcaacgcggt
     2581 cgcgcccggc tggatcgcct cgagcggcct ggatcattac ccgccgcaga tgaccgagac
     2641 gatccgcggc atgtcgaagc tcgtgccgct gcagcgcctg ggcaccgaaa gcgaagtcgc
     2701 ggcggcgatc gtcttcctgc tctcgccggc ggcggcgttc atctcgggag cctgcctgcg
     2761 catcgacggc gcggcgccga acgcgaagcg catctggccc gaagtgggaa caggcggcag
     2821 caccgagccc ttcgaaggct tccacctcgc gacgacgccg cgggtgctca agcccggttc
     2881 ccaatagcgc gaagacaaga cccaacccac aggacccgcc atgcagttca cccacgagca
     2941 cgaagagatc cggcgcacgc tcaagcgctt catcgccgac gagatcaacc cgcacgtcga
     3001 cgaatgggag gcagccgagc tgttccccgc gcacgaggtg ttcaagaagc tcggcgacct
     3061 cggcctgctc ggtctgacca agccgaccga tttcggcggt atggcgctcg attattcgta
     3121 ttcggtcgtg atggccgagg cgctcggtga catcaactgc ggcgcgctgc cgatggccat
     3181 cggcgtgcag accgacatgg cgacgccagc gctggcgcgc ttcggctcgg acgcgttgcg
     3241 ccgcgaattt ctcgcgcctt cgatcgcggg c
//
LOCUS       DASVHM010000370         3472 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_388441, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000370 DASVHM010000000
VERSION     DASVHM010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3472)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3472)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3472
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388441"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..850
                     /gene="urtD"
                     /locus_tag="VF308_06990"
     CDS             <1..850
                     /gene="urtD"
                     /locus_tag="VF308_06990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012840156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="urea ABC transporter ATP-binding protein UrtD"
                     /protein_id="HEX7436432.1"
                     /translation="AAEQRRRAAKDPSGGRETSYSRVARPGELDIVHGAILYLDDITV
                     SFDGFKALNALSLSISAGELRCIIGPNGAGKTTMMDVITGKTRPDAGRAFFGSTIDLL
                     RLHENDIASIGVGRKFQKPTVFEHLSVFENLELALKADRGVRASMFFRLSGEQLDRIG
                     STLILIHLKDSAQRTAGMLSHGQKQWLEIGMLLIQSPKLLLLDEPVAGMTDEETERTA
                     ELFLSLEGSHSLVVVEHDMKFIHALTRDNPAKKVTVLHEGSVLAEGSLADVQANEKVV
                     EVYLGR"
     gene            923..1627
                     /gene="urtE"
                     /locus_tag="VF308_06995"
     CDS             923..1627
                     /gene="urtE"
                     /locus_tag="VF308_06995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019574793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter ATP-binding subunit UrtE"
                     /protein_id="HEX7436433.1"
                     /translation="MLKAEGINQYYGGSHILRNVGFEARPGEVTVVLGRNGVGKTTLL
                     KSLMGVVPVKTGRIAFAGAEITRDTPYERVRKGIGYVPQGREIFARLTVQENLAMGLA
                     YKRGGTPVPAALFDLFPILKTMINRRGGDLSGGQQQQLAIARALAAGPKLLILDEPTE
                     GIQPSIIKDIGRVIRMLAERGIDGVRMAIVLVEQYYDFAAELADQYLVMERGEIIRRG
                     RGKDMAADGVRKMMSI"
     gene            1727..2401
                     /locus_tag="VF308_07000"
     CDS             1727..2401
                     /locus_tag="VF308_07000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HEX7436434.1"
                     /translation="MITVHHLNNSRSQRVLWLLEELGQPYEIKHYQRDPKTMLAPDTL
                     REVHPLGKSPVLTDGDMTVAESGAIVEYLVERYGNGRLVPAPGTPERRRYTYWLHFAE
                     GSAMPPLLLKLIFDKIPTMPMPFFVKPVARGISAKVLERMVTPNLKRQLDFMEGELAR
                     SEWFAGAEFSAADIQMSFPLEAAAQRAGLDSSRPHLHAFLKRIHARPAYKKALERGGP
                     YSFATD"
     gene            2417..>3472
                     /locus_tag="VF308_07005"
     CDS             2417..>3472
                     /locus_tag="VF308_07005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase family protein"
                     /protein_id="HEX7436435.1"
                     /translation="MNTRPLRNVLAATIAALCGAIAQAASQAPVAAEHGMVVTAQHLA
                     TEVGVDVLKKGGNAIDAAVAVGYALAVVYPAAGNLGGGGFMTIQLADGRKTFLDFREK
                     APLAASADMYLDAAGNVIKGSTTTGHLAVGVPGTVSGLEMALARYGTMKRADLIAPAI
                     RYAEQGFVLEQGDADMFATATEAFKADPATAAIFLNNGQPFGAGDRLVQRDLAGTLRQ
                     IGEAGATAFYKGPVAQAIVASSQAGKGLLTQADLDQYKTRELAPVECDYRGFHVVSAP
                     PPSSGGVIICEILNVLEGYPLKDWGFRSAAAVHVQIEAMRHAYVDRNSYLGDPDFVKN
                     PLDRLLDKGYAAKIRAAI"
BASE COUNT          596 a         1199 c         1152 g          525 t
ORIGIN      
        1 agcggccgag cagcgccggc gtgcggcgaa ggatccttcg ggcgggcgcg agaccagcta
       61 ctcgcgcgtc gcgcggccgg gcgaactcga catcgtccac ggcgcgatcc tctatctcga
      121 cgacatcacc gtcagcttcg acggcttcaa ggcgctcaac gcgctgtcgc tctcgatcag
      181 cgccggcgaa ctgcgctgca tcatcggtcc gaacggcgcc ggcaagacga cgatgatgga
      241 cgtcatcacc ggcaagacgc ggcccgatgc cgggcgcgcc ttcttcggtt cgaccatcga
      301 cctgctgcgc ctgcacgaga acgacatcgc atcgatcggc gtcggccgca agttccagaa
      361 gccgaccgtc ttcgaacacc tgagcgtgtt cgagaacctc gagctcgcgt tgaaggccga
      421 ccgcggtgtg cgcgcgtcga tgttcttccg cctgagcggc gagcaactcg atcgcatcgg
      481 ctcgacgctg atcctgatcc acctgaagga cagcgcccag cgcaccgccg ggatgctctc
      541 gcacggacag aagcagtggc tcgagatcgg catgctgctg atccagagtc cgaagctgct
      601 gctgctcgac gagccggtgg ccggcatgac cgacgaggaa accgagcgca ccgcggagct
      661 ttttctttcg ctcgagggca gccactcgct cgtcgtcgtc gagcacgaca tgaagttcat
      721 tcacgcgctg acgagggaca acccggccaa gaaggtcacg gtcctgcatg aaggcagcgt
      781 gctggcggag ggatcgctcg cggacgtgca ggcgaacgag aaagtcgtcg aggtgtatct
      841 tggacgttga ctgcggaggc ctcctcgctg ctcgtgagag cccgccgaga cccggcgcgg
      901 tcccgcaaag gaagtgcgac gcatgttgaa ggcagaaggc atcaatcagt actacggcgg
      961 ttcgcacatc ctgcgcaacg tcggcttcga ggcccggccc ggcgaggtga cggtcgtgct
     1021 cggccgcaac ggcgtcggca agacgacgct gctgaagagc ctgatgggcg tggtgccggt
     1081 gaagacggga cgcatcgcct ttgccggcgc cgagatcacc cgcgacacgc cgtacgagcg
     1141 ggttcgcaag ggcatcggct acgtgccgca ggggcgcgag atcttcgcgc gcctgacggt
     1201 gcaggagaac ctggcgatgg gcctggccta caagcgcggc ggcacgccgg ttccggccgc
     1261 gctcttcgac ttgtttccga tcctcaagac gatgatcaac cgccgcggcg gcgatctttc
     1321 cggcggccag cagcagcagc tcgcgatcgc ccgcgcgctc gcggcgggcc cgaaactgct
     1381 gatcctcgac gagccgaccg aaggcatcca gccgagcatc atcaaggaca tcgggcgcgt
     1441 catccgcatg ctcgccgagc gcggcatcga cggcgtgcgc atggccatcg tgctggtcga
     1501 gcagtactac gatttcgcgg ccgagctcgc cgaccagtac ctcgtgatgg agcgcggtga
     1561 gatcatccgg cgcgggcgcg gaaaagacat ggccgccgac ggcgtgcgca agatgatgtc
     1621 gatctgagcg tcgcggccgc gcgcctcgcc tgcggcttgc gaccgggggc tgccaggtcg
     1681 gggcggggtc acaatgccgg ctcgatggct cgacctggcg gctgcgatga tcaccgttca
     1741 ccacctcaac aattcgcgtt cccagcgggt cctgtggctc ctcgaggagc tcggccagcc
     1801 ctacgagatc aagcactacc agcgcgaccc gaagacgatg ctcgcgcccg acacgctgcg
     1861 cgaggtgcac ccgctcggca agtcgccggt gctcaccgat ggcgacatga cggtcgccga
     1921 atcgggtgcc atcgtcgagt acctggtcga gcgctacggc aacggccgcc tcgtgcctgc
     1981 ccccggcacg cccgagcgtc gccgctacac ctactggctc catttcgccg aaggctcggc
     2041 gatgccgccc ctgctcctga agctcatctt cgacaagatc ccgacgatgc cgatgccgtt
     2101 cttcgtgaag ccggtcgcgc gcggcatttc ggccaaggtg ctggagcgca tggtcactcc
     2161 aaacctgaag cgccagctcg atttcatgga aggcgagctg gcccgcagcg agtggtttgc
     2221 cggcgccgag ttcagcgccg ccgacatcca gatgagcttt ccgctcgagg ccgcggcgca
     2281 gcgcgccggg ctcgattcga gccggccgca cctgcatgca tttctcaagc gcatccatgc
     2341 gcggccggcg tacaagaagg cgctcgagcg cggcgggccg tacagctttg caacagattg
     2401 aagccgaggt gaaccgatga atacaagacc cttgcgcaac gtgctcgccg cgacgatcgc
     2461 ggccctctgc ggcgcaatcg cgcaggcggc atcgcaggcg cctgttgcgg ccgagcacgg
     2521 catggtcgtg acggcgcagc acctcgccac cgaagtcggc gtcgatgtcc tgaaaaaggg
     2581 cggcaacgcc atcgacgcgg ccgtcgcggt cggctatgcg ctggccgtcg tctaccccgc
     2641 ggcgggcaac ctcggcggcg gcggcttcat gacgatccag ctcgccgacg gccgcaagac
     2701 ctttctcgat ttccgcgaga aggcgccgct cgcggccagc gccgacatgt acctcgacgc
     2761 cgccggcaac gtcatcaagg gctcgaccac gacgggccac ctggcggtcg gcgtgccggg
     2821 cacggtgtcg ggcctcgaga tggcgctcgc ccgctacggc acgatgaagc gcgccgacct
     2881 catcgcgccc gcgatccgct acgccgagca gggcttcgtc ctcgagcagg gcgacgccga
     2941 catgttcgcg acggcgaccg aggccttcaa ggccgacccg gcgaccgcgg cgatcttcct
     3001 caacaacggc cagcctttcg gcgccggcga ccggctcgtc cagcgcgacc tcgcgggcac
     3061 gctgcgccag atcggcgaag ccggcgccac cgccttctac aagggtcccg tcgcgcaggc
     3121 gatcgtggcc tcgagccagg ccggcaaggg gcttctcaca caagccgatc tcgaccagta
     3181 caagacgcgc gaactggccc cggtggaatg cgactaccgc ggcttccacg tcgtctcggc
     3241 gccgccgccg agctcgggcg gcgtcatcat ctgcgagatc ctgaacgtgc tcgagggcta
     3301 cccgttgaag gactggggct tccgttcggc cgcggccgtg cacgtgcaga tcgaggcgat
     3361 gcgccacgcc tacgtcgatc gcaatagcta tctcggcgac cccgacttcg tgaagaaccc
     3421 gctcgaccgg ctgctcgaca aaggctacgc ggcgaagatc cgcgccgcga tc
//
LOCUS       DASVHM010000371         5663 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_243418, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000371 DASVHM010000000
VERSION     DASVHM010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5663
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243418"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..1145)
                     /gene="queG"
                     /locus_tag="VF308_07010"
     CDS             complement(54..1145)
                     /gene="queG"
                     /locus_tag="VF308_07010"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HEX7436436.1"
                     /translation="MIAAVKWDGEALLAQLREQARALGFSQIGVADVNLASAEPGLLA
                     WLHNGFHGDMDYMAAHGLRRARPAELISGTVRVITARLDYLAQATPADWQAIEWQRLG
                     DPEQAAVSLYARGRDYHKVLRTRLQQLADGLAAAVGPFGHRVFTDSAPVLEVELAARS
                     GIGWRGKHTLVLDREAGSMFFLGEIYVDLALPLTEAASAHCGSCTACIDICPTQAIVG
                     PYRLDARRCISYLTIEHKGAIPIEFRAAIGNRIYGCDDCQLVCPWNKYAKVSALPDFD
                     VRALFAGPTLLQLWQWSEADFLHATEGSAIRRIGHERWQRNCAVALGNALRSKPDAAI
                     ADALRARRDSATALVREHIDWALAQAPAC"
     gene            1146..1622
                     /gene="tsaE"
                     /locus_tag="VF308_07015"
     CDS             1146..1622
                     /gene="tsaE"
                     /locus_tag="VF308_07015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEX7436437.1"
                     /translation="MSILETRHLLWPDERACASAAAALARHPDLRNAFIELQGPLGAG
                     KTTFVRHLLRALGVQGHVKSPTYALLEPYEVATDQGSMAISHFDFYRFDDPQEWEDAG
                     FRDVFASPGLKLVEWPEKAAALLPRADLRITIEPRAGDERAVRLDAQTPVGAELLG"
     gene            1619..2953
                     /locus_tag="VF308_07020"
     CDS             1619..2953
                     /locus_tag="VF308_07020"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEX7436438.1"
                     /translation="MSRPPTPTRPDRRAALRSMGALCLCIGARDLALGASIVAVRVWP
                     ASDYTRVTIESDAPLAERHFLAQDPQRLVIDIDGLELSPSLRELVGKVGADDPFIAGV
                     RVGQNQPRVVRMVIDLKQATAPQLFTLAPVAAYQHRLVFDLYPTQERDPLLALIRDKE
                     QAEEQAAKAVQDALGEFIGRMGKPVPVAPHEPPAAIVLPPPPAMQEKIDRLVVVALDP
                     GHGGEDPGAIGPSGLREKDVVLQIALQLRERINAQPNMRAMLTRDADFFVPLHERVRR
                     ARRVQADLFVSIHADAFFTPQARGASVFALSQSGASSSAARWMAERENAADLVGGVNI
                     KASDPTVLRTLLDMSTTAQIKDSLKLGGEVLGQIGRVGRLHKGSVEQAGFAVLKAPDV
                     PSILVESAFISNPEEEARLRDPDYQARLVEALTTGIRRYFARNPPLARSRQL"
     gene            3024..3983
                     /locus_tag="VF308_07025"
     CDS             3024..3983
                     /locus_tag="VF308_07025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7436439.1"
                     /translation="MLHPQSRALLTLIEERGFPPTHTLTPTEARAFYRERRAFTQPEP
                     PQVGSVRELQAEGPHGPIPMRLYLPLAAPDGDAAARGALPVLVYFHGGGWVIGDLDTH
                     DTLCRELTNGSGCAVVAVDYRMGPEHRFPAAVDDCIAATRWLRREASALGLDPKRIAV
                     GGDSAGGNLAAVVSIAAREAGDPALAFQLLIYPATDMRRTAPSHTTNGEGYLLTRDTI
                     GYFHDHYIDDVRHDLDWRASPLLHADLSKLPPALVLTAGYDPLRDEGMAYAAQLTKAG
                     NRVTYVCFERQIHGFITMGRVLDEANAAVSMCVAELRRALVPA"
     gene            complement(4057..4701)
                     /locus_tag="VF308_07030"
     CDS             complement(4057..4701)
                     /locus_tag="VF308_07030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEX7436440.1"
                     /translation="MEFIGQFVDFVLHVDVHLATFVQAHGAWVYALLFLIVFIETGVV
                     VMPFLPGDSLLFVVGALAGAGLMNLPLVLALLSAAAILGNQSNYAIGRHFGPKVFQWE
                     DSRFFNRRAFDQAHAFYERYGGITIVAARFMPFLRTFAPFVAGVAQMTRRKFMFYDVT
                     GGLLWVCGVTLAGYAFGNIPWVKLNLDKIIWAAILVPGLLVLFGAWRARGRAVT"
     gene            complement(4710..>5663)
                     /locus_tag="VF308_07035"
     CDS             complement(4710..>5663)
                     /locus_tag="VF308_07035"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEX7436441.1"
                     /translation="ALPKPVALHLTVARDNKPALFEHGILTGLLCAHLVREGGGMQHD
                     MDMAAAAGLLHDLGMLHIDPALFDSGDPLSGDQLNPLYVHPLTSSMLMGRFVDYPKEV
                     LRAVVEHHEQLDGSGYPRGLIGDAISPLGRLLSLAEVVTAMFDGGRQYPEQRVSLLLR
                     INPRRYDPALVPSIERLLRALPPPVEDSGMPAAESVESLRRLDALLTDWRDAVTAMLP
                     RLDTAGRSLVQSVSKQTDTLQRMLYEAGITPDQLGLIADDAANDPALRIELWALAQEL
                     QWQLRSTANQLQRRWRAGESKQAYPPLLAVWLDQVKGIGTT"
BASE COUNT          927 a         2007 c         1906 g          823 t
ORIGIN      
        1 attcgatatc tccaggttgc tgacacggca gtgtaggggg tggcgcgaga ccgtcagcaa
       61 gccggtgcct gagccagcgc ccagtcgatg tgctcgcgca ccagcgcggt cgcggaatcg
      121 cgccgcgcgc gcaacgcatc ggcgatggcc gcgtcgggct tgctgcgcag cgcgttgccg
      181 agcgcgaccg cgcagttgcg ctgccagcgc tcgtggccga tgcgccggat cgcgctgcct
      241 tcggtcgcat ggagaaagtc ggcttcgctc cactgccaca gttgcagcaa tgtcggcccg
      301 gcgaacagtg cacgcacgtc gaagtcgggc agcgcgctca ccttcgcata cttgttccag
      361 gggcagacca gctggcagtc gtcgcagccg tatatgcggt tgccgatcgc ggcgcgaaac
      421 tcgatcggaa tcgctccctt gtgttcgatc gtcaggtacg agatgcagcg ccgcgcgtcg
      481 agccgataag gtccgacgat cgcctgcgtc gggcagatgt cgatgcaggc agtgcagctg
      541 ccgcaatgcg ccgaagcggc ttcggtcagc ggcagcgcga ggtcgacata gatctcgccg
      601 aggaagaaca tcgatccggc ctcgcgatcg agcacgagcg tgtgcttgcc gcgccagccg
      661 atgccgctgc gcgccgcgag ctcgacctcg agcaccgggg ccgaatcggt gaagacgcgg
      721 tgcccgaacg gccccacggc agcggccagg ccatcggcga gctgttgcaa gcgcgtgcgc
      781 agcaccttgt gatagtcgcg accccgggcg tagagcgaca ccgcggcctg ctccggatcg
      841 cccagacgct gccactcgat cgcctgccag tcggcgggcg tcgcctgcgc caggtagtcc
      901 aggcgcgcgg tgatcacgcg caccgtgccg gaaataagct cggccggccg ggcccggcgc
      961 aggccgtgcg ccgccatgta gtccatgtcg ccatgaaagc cgttgtgcaa ccacgccaaa
     1021 agtcccggtt ctgccgacgc gaggttcaca tccgccacac cgatctggga aaatccgagc
     1081 gcgcgggcct gctcgcgcag ttgcgcgagc aaggcctccc catcccattt cacggctgcg
     1141 atcatttgtc gattctagaa acccgccacc tgctctggcc cgatgaacgg gcctgcgcca
     1201 gcgccgccgc cgccctggca cgccacccgg acttgcgcaa tgcattcatc gagctgcagg
     1261 gcccgctcgg cgccggcaag accaccttcg tgcgccacct gttgcgcgca ctcggcgtcc
     1321 agggccacgt gaagagcccg acctacgcgt tgttggaacc gtacgaggtg gcgacggacc
     1381 aaggcagcat ggccatctcg catttcgact tctatcgttt cgacgatccg caggagtggg
     1441 aggacgccgg ctttcgcgac gtgttcgcga gcccgggctt gaagctcgtc gaatggcccg
     1501 agaaagccgc cgcgctgctg ccgcgcgccg acctgcgcat caccatcgag ccgcgcgcgg
     1561 gcgacgagcg cgcggtgcgt ctcgatgccc aaacaccggt cggcgcggag ttgctcggat
     1621 gagccggcca cccaccccga cccgccccga ccggcgcgcc gcgttgcgct cgatgggcgc
     1681 gctctgcctt tgcatcggtg cgcgcgacct ggcgctcggc gcgagcatcg tcgcggtgcg
     1741 cgtctggccg gccagcgact acacgcgcgt cacgatcgaa tcggatgcac cgctcgccga
     1801 acgccacttc ctggcccagg acccgcagcg cctcgtcatc gacatcgacg gcctcgagct
     1861 cagtccgtcg ctgcgcgaac tggtcggcaa ggtgggcgcg gacgatccgt tcatcgccgg
     1921 cgtgcgggtc ggccagaacc agccgcgcgt cgtccgcatg gtgatcgacc tgaagcaagc
     1981 caccgcaccg cagctcttca cgctcgcgcc ggtcgcggcc taccagcacc ggctcgtctt
     2041 cgacctgtac ccgacgcagg aacgcgaccc gctgctcgcc ctgatccgcg acaaggagca
     2101 ggccgaggag caggccgcca aggcggtgca ggacgcgctc ggcgagttca tcggccgcat
     2161 gggcaagccc gtgccggtcg cgccgcacga gccgcccgcg gccatcgtcc tgccgccgcc
     2221 tccggcgatg caggaaaaga tcgaccggct cgttgtcgtc gccctcgacc cggggcacgg
     2281 cggcgaagac ccgggcgcga tcgggccgag cggcctgcgc gaaaaggacg tggtgctgca
     2341 gatcgcgctg cagttgcgcg agcgcatcaa cgcccaaccg aacatgcgcg cgatgctgac
     2401 ccgcgacgcc gacttcttcg tgccactgca cgagcgcgtg aggagggccc ggcgggtgca
     2461 ggccgacctg ttcgtctcga tccatgccga tgcgttcttc acgccgcagg cgcgcggcgc
     2521 ctcggtgttc gccttgagcc agagcggcgc gagcagctcg gcggcgcgct ggatggccga
     2581 gcgcgagaac gccgccgacc tggtcggcgg cgtcaacatc aaggccagcg atccgaccgt
     2641 cctgcgcacc ctcctcgaca tgagcacgac cgcgcagatc aaggacagcc tcaagctcgg
     2701 cggcgaggtg ctcggccaga tcggaagggt cggacgcctg cataagggca gcgtcgagca
     2761 ggccggcttc gcggtcttga aagcgcccga cgtgccctcg atcctggtcg agtcggcgtt
     2821 catctcgaac cctgaggaag aggccaggct gcgcgatccc gactaccagg cgcgcctcgt
     2881 cgaggccctc acgaccggca ttcgccgcta cttcgcgcgc aacccgccgc tcgcccggtc
     2941 acgccagctt taacgggctg ccgaatcgcc ggagccggcg cagcccggta agctgcgatc
     3001 cggacacccc tgtcggagaa ttcatgctgc atccccaatc ccgtgccctg ctcaccctca
     3061 tcgaggaacg cggcttcccg ccgacgcaca cactgacgcc gaccgaagcg cgcgccttct
     3121 accgcgagcg ccgggcgttc acccaacccg agccgcccca ggtcggcagc gtgcgcgaac
     3181 tccaggccga gggcccgcac ggcccgattc cgatgcgcct ctatctcccc ctcgccgcgc
     3241 cagacggcga cgccgccgcc cgcggcgcac tgcccgtgct ggtctacttt catggcggcg
     3301 gctgggtcat cggcgacctc gacacccacg acacgctgtg tcgcgagctc accaatggtt
     3361 ccggctgcgc cgtcgtcgcg gtcgactacc ggatgggtcc ggagcaccgc ttcccggcgg
     3421 ccgtcgacga ttgcatcgcc gcgacccgat ggctgcgccg cgaagccagc gcgctcggcc
     3481 tcgacccgaa gcgcatcgcg gtcggcggcg acagcgcggg cggcaacctc gcggcggtcg
     3541 tgtcgatcgc ggcgcgcgag gcgggcgacc cggcgctcgc cttccagctc ctgatctatc
     3601 ccgcgaccga catgcgccgc acggcgccgt cgcacacgac caatggcgag ggctacctgc
     3661 tgacgcgcga caccatcggc tacttccacg accactacat cgatgacgtg cgccacgacc
     3721 tcgactggcg cgcttcgccg ctgttgcatg ccgacctgtc gaagctgccg ccggctctcg
     3781 tcctgaccgc cggctacgac ccgctgcgcg atgaagggat ggcctacgcg gcgcagctga
     3841 cgaaggccgg caatcgggta acgtacgtct gcttcgagcg ccagatccat ggcttcatca
     3901 cgatgggccg ggtgctcgac gaagccaacg ccgcggtctc gatgtgcgtg gccgaactgc
     3961 gccgcgcgct ggtgccggcc tgatgcgcgg ctttccaggt cacgccctgc ggcgcgccct
     4021 gctggtgccg atgctgcccg cccgactccg gatggttcag gtgaccgccc tgccccgtgc
     4081 gcgccacgcg ccgaacagca ccagcaagcc cggcaccagg atcgccgccc agatgatctt
     4141 gtcgaggttg agcttgaccc aggggatgtt gccgaacgca tagccggcca gcgtgacgcc
     4201 gcagacccag agcaggccgc cggtcacgtc gtagaacatg aacttgcgcc gggtcatttg
     4261 cgcgacgccg gcgacgaaag gcgcgaacgt gcgcaggaac ggcatgaagc gggcggcgac
     4321 gatcgtgatg ccgccgtagc gctcgtagaa cgcgtgcgcc tggtcgaagg cgcggcgatt
     4381 gaagaagcgc gagtcttccc actggaacac cttcgggccg aaatggcgcc cgatcgcata
     4441 gttgctctgg ttgccgagga tcgcggcggc gctcagcagc gccagcacca ggggcaggtt
     4501 catcaggccc gcgccggcga gcgcgccgac cacgaagagc agcgagtcgc cgggcaggaa
     4561 cggcatgacc acgacaccgg tctcgatgaa gacgatcagg aacaggagcg cgtagaccca
     4621 ggcgccgtgg gcctgcacga aggtcgcgag gtgcacgtcg acatgaagga cgaagtcgac
     4681 gaactggccg atgaattcca tcgaaccgat tatgtcgtcc cgatgccctt cacctggtcg
     4741 agccacaccg cgagcaacgg cggataggcc tgcttcgatt cgccggcgcg ccagcgccgc
     4801 tgcaactggt tcgcggtcga gcgcaactgc cattgcagtt cctgggccag ggcccagagc
     4861 tcgatgcgca acgccggatc gttggcggcg tcgtcggcga tcaggcccag ctggtcgggc
     4921 gtgatccccg cttcgtaaag catgcgctgc aaggtgtcgg tctgcttgct gaccgattgc
     4981 acaagtgagc gcccggccgt gtcgaggcgc ggcagcatgg ccgtgaccgc gtcgcgccaa
     5041 tcggtcagca aggcgtcgag gcggcgcagg ctctcgaccg attcggccgc cggcatgccc
     5101 gagtcctcga ccggtggcgg cagcgcccgc agcagccgct cgatcgacgg caccagcgca
     5161 ggatcgtagc ggcgcgggtt gatgcgcagc agcagcgaaa cgcgctgctc ggggtactgg
     5221 cgcccgccgt caaacatcgc ggtgacgact tcggcgagcg acaacagccg cccgagcggg
     5281 ctgattgcat cgccgatgag accgcgcgga tagccggacc cgtcgagctg ctcgtgatgt
     5341 tcgaccaccg cgcggagcac ctctttgggg tagtcaacga agcgccccat cagcatcgac
     5401 gaggtcagcg gatggacgta gaggggattc aactgatcgc cgctcaacgg atcgcccgaa
     5461 tcgaacagcg cagggtcgat gtgcagcatg ccgagatcgt ggagcaggcc ggccgcagcg
     5521 gccatgtcca tgtcgtgctg catgccgccg ccttcgcgga ccaggtgcgc gcacagcagc
     5581 ccggtgagga tgccgtgctc gaagagtgcc ggcttgttgt cgcgcgcgac cgtcaggtgc
     5641 agggcgacgg gcttgggcag cgc
//
LOCUS       DASVHM010000372         1838 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1037057, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000372 DASVHM010000000
VERSION     DASVHM010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1037057"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /locus_tag="VF308_07040"
     CDS             <1..413
                     /locus_tag="VF308_07040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEX7436442.1"
                     /translation="ALTVPSGGTLEAKGHADSQLTRRLRDALHDVLAQLQFGQVLLAS
                     IGSTAPFIGLFGTVWGIYHALISISAAGMITIERVSGPVGEALVMTAAGLAVAIPAVL
                     AYNIFGKRVAASEAELEGFAHDLREMIIDAGAGA"
     gene            430..873
                     /locus_tag="VF308_07045"
     CDS             430..873
                     /locus_tag="VF308_07045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEX7436443.1"
                     /translation="MAFGRLERTPGAQPMSDINMTPLIDVMLVLLVIFMITAPLMTSS
                     LKLDLPKTEAGQPNDAPQFISVALDPQGRFYFGDEIVDSATFSARVAEAARKNPQTEV
                     QLRADRTVPYGRVAELIGIVQNAGLSRVGFVIEPAPVTAPVATRP"
     gene            complement(845..1462)
                     /locus_tag="VF308_07050"
     CDS             complement(845..1462)
                     /locus_tag="VF308_07050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006162395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1415 domain-containing protein"
                     /protein_id="HEX7436444.1"
                     /translation="MKRAKRSPPTAIEPSAASAAEIAIAETRAWVERAVVGLNLCPFA
                     KAAQAHGRTRFVCSAATDPETLLGAFCDEARFLVRASPAAIETTLLIHPFALADFDDY
                     NDFLDLADAALEALGCAGVLQVASFHPHYRFAGTAADDVTNATNRSPYPVLQLLREDS
                     IAAAVAAFPDSATIYEANLATLRRLGVEGWAELAESFRAWSRPVP"
     gene            complement(1483..1794)
                     /locus_tag="VF308_07055"
     CDS             complement(1483..1794)
                     /locus_tag="VF308_07055"
                     /inference="COORDINATES: protein motif:HMM:NF026093.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436445.1"
                     /translation="MLHLASAEYGAGRSDVLTKLKPYLDAEATVVGYRPGKGKYDGDA
                     GALQVRTPEGRRFFIGSGLPDNIRRDPPRRGSIVTYRYHDLTETGLPRFASFLRVHEA
                     F"
BASE COUNT          291 a          618 c          640 g          289 t
ORIGIN      
        1 cggcgctgac ggtgccgtcc ggcggcacgc tcgaagcgaa gggccacgcc gattcgcagc
       61 tgacgcggcg cctgcgcgac gcactgcacg acgttctcgc ccagctgcag ttcggccagg
      121 tgctgctcgc gtcgatcggc agcacggcac ccttcatcgg cctcttcggc acggtgtggg
      181 gcatctacca tgcgctgatc agcatctcgg cggccggcat gatcacgatc gagcgggtct
      241 cgggaccggt cggcgaagcg ctcgtgatga ccgccgcggg tctcgccgtc gcgatcccgg
      301 cggtgctcgc ctacaacatc ttcggcaagc gcgtcgcagc gagcgaggcc gagctcgaag
      361 gcttcgcgca cgacctgcgc gagatgatca tcgacgccgg cgccggcgct tgaagagccc
      421 tcgactcgca tggccttcgg acgactcgaa cgcacgcccg gcgcccagcc gatgagcgac
      481 atcaacatga cgccgctgat cgacgtgatg ctggtgctgc tggtgatctt catgatcacc
      541 gcgccgctga tgacctcgag cctgaagctc gacctgccga agaccgaggc cggccagccc
      601 aacgacgcac cgcagttcat ttcggtggcg ctggatccgc aggggcgctt ctacttcggc
      661 gatgagatcg tggacagcgc caccttcagt gcgcgcgtgg ccgaggccgc gcgcaagaac
      721 ccgcagaccg aggtgcagtt gcgcgccgac cggaccgtcc cctacggccg ggtggccgag
      781 ctaatcggga tcgttcagaa cgcgggcttg agccgggtcg gcttcgtgat cgagccggca
      841 ccggtcacgg caccggtcgc gaccaggccc tgaaggattc ggcaagctcg gcccagccct
      901 cgacaccgag gcggcgcaag gtggcgagat tggcctcgta gatcgtggcg ctgtccggga
      961 atgccgcgac cgccgcggcg atgctgtcct cgcgcaggag ttgcaagacc ggatagggcg
     1021 aacgattggt cgcgttggtc acgtcgtccg ccgcggtgcc cgcgaaccgg tagtgcggat
     1081 ggaagctcgc gacctgcaac acgcccgcgc agccgagcgc ctcgagcgcg gcatcggcga
     1141 gatcgagaaa gtcgttgtag tcgtcgaaat ccgccagcgc gaagggatgg atcagcagcg
     1201 tcgtctcgat cgcggcgggg gatgcccgga ccaggaaacg cgcttcgtcg cagaaggcgc
     1261 cgagcagcgt ttccggatcg gtcgcggcgc tgcagacgaa gcgggtccgg ccgtgggctt
     1321 gcgccgcctt cgcgaacgga caaaggttca ggccgaccac cgcgcgctcg acccaggccc
     1381 gggtttcggc gatggcgatc tctgcagcgc tcgcagccga gggttcgatg gcggtcggtg
     1441 ggcttcgctt cgctctcttc atctgcactt cgtcggtccg tttcaaaagg cctcgtgcac
     1501 gcgcaggaag ctcgcgaagc gcggcaggcc ggtctccgtc aggtcatggt agcggtaggt
     1561 gacgatgctg ccgcggcgcg ggggatcgcg acggatgttg tcaggcagac cggagccgat
     1621 gaagaagcgc cgcccttcag gcgtgcgcac ctgcagcgcg ccggcatcgc cgtcgtactt
     1681 gcccttgccg ggccggtagc cgacgacggt cgcttcggca tcgaggtacg gcttcagctt
     1741 ggtcagcacg tcgctgcggc ccgcaccgta ttcggcagag gccaggtgca gcaccaggcc
     1801 ctcgcctccc tacgcgactg tctcctccag acggcgtc
//
LOCUS       DASVHM010000373         4561 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_894412, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000373 DASVHM010000000
VERSION     DASVHM010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4561
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_894412"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..846
                     /locus_tag="VF308_07060"
     CDS             <1..846
                     /locus_tag="VF308_07060"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0019674 - NAD metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEX7436446.1"
                     /translation="VGKFQAEGIRGVLERIARFLVARGLAVSVETQTAQNTGIDAYPM
                     LDAHELGRQCDLAVVLGGDGTMLGIARQLARYGTPLIGINQGRLGFITDIPIDEFEAA
                     LSPMVAGEYVEEQRTMLEGHVRRGGAVIFDGHAMNDVVVSRSSTSSMVELKIDIGDEF
                     VANLRADGLIIGSPTGSTAYALSAGGPILHPGIAGWVLVPIAPHDLSNRPIVLPDGGE
                     ISIEIVGGRNASVNFDMQSLASLLHGDRIIVRRSPHRVRFLHPRGWNYYATLRRKLHW
                     HAGVA"
     gene            861..2567
                     /gene="recN"
                     /locus_tag="VF308_07065"
     CDS             861..2567
                     /gene="recN"
                     /locus_tag="VF308_07065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEX7436447.1"
                     /translation="MLRRLSLRNFVIVTELDVEFEELFTVLTGETGAGKSILIDALQL
                     ALGSRGDAGVVREGAARADIGAEFDAPASLAAWLAEAGFEAGPDEQERLLLRRTIDAQ
                     GKSRAWINGSPATIAQLREAADHLVDIHGQHAWQSLTRAPSVRALLDAYAGLDAAPLA
                     AAWSAWKSALQALEAARMKQADLERERERLAWQIGEIAKLAPGADEWAELDAEHTRLA
                     HAQALIEAARGALEAIAEADANAEALTGRAIDTLEAVAAFDPQLAATIEVLQGAQAQL
                     EDAAHTLNGYLNRIDLEPERLGALDDRLSAWLTLARRYRRPPAELHALWSQWQDESRA
                     LDAAADPDALQKALEAASAAFKTEAARVSKARRKAAPLLAAAITQAMQQLGMSGGRFE
                     VALPAQEAPQSFGLESAEFLVAGHAGTTPRPLAKVASGGELSRIALAIAVTTSQLASG
                     EGAAATLIFDEIDAGVGGAVGETVGRLLKQLGRDRQVLAVTHLPQVAACADHHFVVSK
                     RTRDGAVQSGIDVVTGEARVAEVARMLGGERLSGTSLAHAQEMISEAAAGAPPPEGRK
                     RP"
     gene            2609..3508
                     /gene="rapZ"
                     /locus_tag="VF308_07070"
     CDS             2609..3508
                     /gene="rapZ"
                     /locus_tag="VF308_07070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013721515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEX7436448.1"
                     /translation="MSLQEVVLVTGISGSGKSVALHALEDAGFFCVDNLPPELLRDFL
                     HLELRRPGRRIAIAVDVRSAGSLPHLLPVLGQLRNEGVSIQSVFLDASTDALVRRFSE
                     TRRPHPLSDHDPVHAPGPDASAADGRRALIDAIELERELLAELREVSTVIDTSQLRPA
                     QLRAWMRDLVQADDSHLTLVFESFAFKHGVPLDADYVFDVRVLPNPHYVRELRPLTGR
                     DEAVALYLDAQPEVNEMLDQIETFLTRWLPAFVRDQRSYLTVALGCTGGQHRSVYFAE
                     MLARRFRGRSVALIRHREIDHVG"
     gene            3519..4139
                     /locus_tag="VF308_07075"
     CDS             3519..4139
                     /locus_tag="VF308_07075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEX7436449.1"
                     /translation="MAATPDPSELPLFPLQAVLFPDGLLALKVFEARYLDLMAACMRH
                     RAAFGVVGLKRGTEVRRPDQPVAFESIGTKAELLDVDSAQAGILMVRCRGTERFEIDS
                     SRQQHDGLWLARTTPIVADETVAPTAALGAASRGLADAIAALDSQGTQPFLLPHRLAD
                     AGWVANRWCELLPIPIAAKQKLMELRDPLMRLEIVDDFLRKKGVLP"
     gene            complement(4157..>4561)
                     /locus_tag="VF308_07080"
     CDS             complement(4157..>4561)
                     /locus_tag="VF308_07080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX7436450.1"
                     /translation="RTQERYPVKGARAKRGQREHVWLWLCWRERVWLVRRPQQGVWAG
                     LWSLPEFDALPAFEAASAHWPGQGVALASFKHVLTHLDWRLHPWRWTLPVKTAAKRIA
                     EVTGAWPTGRWFMRDEALALGLPAPLRRLLSG"
BASE COUNT          693 a         1636 c         1570 g          662 t
ORIGIN      
        1 gtcggcaagt tccaggccga aggcatccgt ggcgtgctgg agcgcattgc ccgcttcctg
       61 gtcgcccggg gcctggccgt gtcggtcgaa acgcagaccg cgcagaacac gggaatcgat
      121 gcctatccga tgctcgacgc ccacgaactc ggccgccagt gcgacctcgc cgtggtgctc
      181 ggcggcgacg gcaccatgct cggcatcgcc cgccagctcg cccgttacgg cacgccgctg
      241 atcggcatca accaggggcg cctgggcttc atcaccgaca tcccgatcga cgagttcgag
      301 gcggcgctgt cgccgatggt tgcgggcgaa tacgtggaag aacagcgcac gatgctcgaa
      361 ggccacgtgc gccgcggggg cgccgtgatc ttcgacggcc acgcgatgaa cgacgtggtc
      421 gtgagccgga gctcgacttc gagcatggtc gaactcaaga tcgacatcgg cgacgagttc
      481 gtcgccaacc tgcgcgccga cggcctcatc atcggttcgc cgaccggctc gaccgcgtac
      541 gcgctttcgg ccggcggccc gatcctgcac ccgggcatcg ccggctgggt cctggtgccg
      601 atcgcgccgc acgatctctc gaaccggccg atcgtgctgc ccgatggagg cgagatctcg
      661 atcgagatcg tgggcgggcg caatgccagc gtcaacttcg acatgcagtc gctggcgagc
      721 ctgctgcacg gcgaccgcat catcgtgcgg cgctcgccgc accgggttcg cttcctgcac
      781 ccgcgcggct ggaactacta cgccaccctg cgccgcaagc ttcactggca cgcgggcgtc
      841 gcctgaatcg ctcgagaaac atgctgcgcc gactctccct gcgcaacttc gtgatcgtga
      901 ccgagctcga cgtcgagttc gaggagcttt tcacggtgct gaccggtgaa accggcgcgg
      961 gcaagtcgat cctgatcgat gcgctgcagc tcgcgctcgg cagccgcggc gacgccggtg
     1021 tggtgcgcga aggcgcggcg cgcgccgaca tcggcgccga gttcgacgcg ccggcgagcc
     1081 tggccgcctg gctcgccgag gccggcttcg aagccgggcc cgacgagcag gagcgcctcc
     1141 tcctgcgccg gacgatcgat gcgcaaggca agagccgcgc ctggatcaac ggcagcccgg
     1201 ccacgatcgc gcaattgcgc gaagcggccg accacctcgt cgacatccac ggccagcacg
     1261 cgtggcagag cctgacgcgc gcgccctcgg tgcgagccct cctcgacgcc tacgccggcc
     1321 tcgacgcggc accgctcgcg gccgcatggt cggcctggaa atccgcgctg caggcgctcg
     1381 aggcggcgcg catgaagcag gccgatctcg agcgcgaacg cgagcgcctc gcctggcaga
     1441 tcggcgagat cgcgaagctt gcgccgggtg ccgacgaatg ggccgagctc gatgccgagc
     1501 acacccggct ggcccacgcg caggccctga tcgaagcggc acgcggcgcg ctcgaggcga
     1561 tcgccgaagc cgacgcgaac gcggaggcgc tcaccggccg cgcgatcgat accctggagg
     1621 cggtcgccgc gttcgacccg cagctcgccg cgactatcga ggtgctgcaa ggcgcgcagg
     1681 cccagctcga ggacgccgcg cacaccctca acggctacct gaaccgcatc gatctcgaac
     1741 ccgagcgcct cggcgccctc gacgatcgtc tctcggcgtg gctgaccctg gcgcgccgct
     1801 atcgccgccc gccggccgag ctgcacgcgc tctggtcgca atggcaggac gagtcgcgcg
     1861 cgctcgatgc cgcggccgat ccggatgcgt tgcagaaggc gctcgaggcg gcgtccgcgg
     1921 ccttcaagac cgaagccgcg cgcgtctcga aagcgcggcg caaggccgcg ccgctgctcg
     1981 cggcggcgat cacgcaggcg atgcagcaac tcggcatgag cggtggccgc ttcgaggtgg
     2041 cgctgcccgc gcaggaagcg ccgcagtcgt tcgggctcga atcggccgag ttcctggtgg
     2101 ccggacatgc gggcaccacg ccgcgcccgc tcgccaaggt ggcatcgggc ggcgagctct
     2161 cgcgcatcgc gctcgcgatc gcggtcacca cgagccagct cgcgagcggt gaaggcgctg
     2221 ccgcgacgct gatcttcgac gagatcgatg ctggcgtcgg cggcgcggtg ggcgagacgg
     2281 tggggcggct tttgaagcaa ctcgggcgcg accgccaggt gctcgcggtg acgcacctgc
     2341 cgcaggtcgc ggcctgtgcc gatcatcatt tcgtcgtctc caagcgcacg cgcgacggcg
     2401 ccgttcaaag cgggatcgac gtcgtgaccg gcgaggcgcg tgtcgccgag gtcgcacgca
     2461 tgctcggcgg cgagcggctc tcgggcacga gtctcgcgca tgcgcaggaa atgatttccg
     2521 aggcggcggc cggcgcgccg ccgcccgagg gtcgcaagcg cccatgagcg acgcgacaca
     2581 cacggccacg gcggagcagg gcggcgcggt gtccttgcaa gaggtcgtcc tcgtgacggg
     2641 aatttccggc tcgggcaagt cggtggcgct gcacgcgctc gaagatgcgg gctttttctg
     2701 tgtcgacaac ctgccgcccg aactgctgcg cgatttcctg catttggagc tacggcggcc
     2761 gggccggcgc atcgcgatcg cggtcgacgt gcgcagcgcc ggttcgctgc cgcacctgct
     2821 gcccgtgctc ggccagctcc gcaacgaagg cgtttcgatc cagagcgtgt ttctcgacgc
     2881 cagcaccgat gccctggtgc ggcgcttttc ggaaacgcgg cgcccgcatc cgctctcgga
     2941 ccatgaccct gtgcatgcgc cggggcccga cgcgagtgcc gcggacggcc ggcgcgcgct
     3001 gatcgacgcc atcgagctcg agcgcgagct gctcgccgaa ctgcgcgagg tctcgaccgt
     3061 gatcgacacc agccagctgc gtccggccca gttgcgcgcc tggatgcgcg acttggtcca
     3121 ggccgacgac agccacctca ccctggtctt cgaaagcttc gccttcaagc acggcgtgcc
     3181 gctcgacgcc gactacgtgt tcgacgtgcg cgtgctgccc aatccgcact atgtgcgcga
     3241 actgcggcca ctgacggggc gcgacgaagc ggtcgcgctc tatctcgatg cgcagcccga
     3301 ggtgaacgag atgctcgatc agatcgagac cttcctcacg cgctggctgc cggccttcgt
     3361 gcgcgaccag cgcagctacc tcacggtcgc gctcggctgc accggggggc aacaccgttc
     3421 ggtctatttc gccgagatgc tggcgcggcg ctttcgcggg cgatcggtgg cgctgatccg
     3481 gcatcgcgag atcgatcacg tcggctgagc gggagcggat ggctgcgacg cccgacccct
     3541 cggaattgcc gctcttcccg ctgcaggccg tcctcttccc cgacgggctg ctcgcgttga
     3601 aggtgttcga ggcgcgctac ctcgatctga tggccgcctg catgcgccac cgcgccgcgt
     3661 tcggtgtggt cggattgaag cgcggcaccg aagtgcgccg acccgaccag ccggtcgcgt
     3721 tcgagtcgat cggcacgaaa gccgagctgc tcgatgtgga cagcgcccag gccggcatcc
     3781 tgatggttcg ctgccgcggc accgaacgct tcgagatcga ctcgagtcgc caacagcacg
     3841 acgggctctg gctcgcgcgc acgacgccaa tcgtggccga cgaaaccgtc gcgccgaccg
     3901 ctgcgctcgg cgctgcgtcc cgcgggctgg ccgatgccat cgctgcgctc gacagccagg
     3961 gcacgcagcc cttcctgctg ccgcatcgcc tcgcggacgc cggctgggtc gcgaaccgct
     4021 ggtgcgaact gctgccgatc ccgatcgcgg ccaaacagaa actgatggaa cttcgcgacc
     4081 cgctgatgcg gctcgaaatc gtcgacgact tcctgcgcaa gaagggcgtt ctgccctgac
     4141 gacccgatgg ggcggctcag ccggaaagca ggcgccgaag gggcgcgggc agaccgagcg
     4201 cgagcgcttc gtcgcgcatg aaccagcgcc cggtcggcca cgcgccggtc acctccgcga
     4261 tccgcttcgc ggccgtcttc acgggcaggg tccagcgcca cgggtgcagc cgccagtcca
     4321 aatgcgtcaa gacatgcttg aagctggcaa gggcaacacc ctggcccggc cagtgtgcac
     4381 tggcggcctc gaaggccggc aacgcatcga attccggcag gctccacaag ccggcccaca
     4441 cgccttgctg cgggcgccgc acgagccaga cgcgctcacg ccagcagagc caaagccaga
     4501 cgtgctcgcg ctgcccgcgc ttggcgcgcg cgcccttgac cggatagcgc tcctgcgtcc
     4561 g
//
LOCUS       DASVHM010000374         3454 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_459146, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000374 DASVHM010000000
VERSION     DASVHM010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3454
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459146"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1107
                     /locus_tag="VF308_07085"
     CDS             <1..1107
                     /locus_tag="VF308_07085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-glucose phosphate-specific
                     phosphoglucomutase"
                     /protein_id="HEX7436451.1"
                     /translation="AEALRAATTHRHDYIGSYVADLDNVIDFEAIRNAKVRMGVDPLG
                     GAGVHYWARIAEHYKLDLTVVSDSVDATFRFMTLDWDGQIRMDPSSPYAMQRLLDIKD
                     RFDIAFACDTDHDRHGIVTSKAGLLAPNHYLAVAIDYLFQHRPQWAANAAVGKTVVST
                     NLIDLVTKRLGRRLYEVPVGFKWFADGLLDGSLGFGGEESAGASFLRRDGTVWTTDKD
                     GLAPALLSAEITARCGRDPGQLYAELAQEFGNPLTDRVEAPATVQQKKQLAALTPAQL
                     GASELAGEKIDSVLGNAPGNGAAIGGIKVIARSGWFAARPSGTEDIYKIYAESFAGAD
                     HLQRILEDAQAIVDRAIAAPVAADASNAAPKKDH"
     gene            1109..2140
                     /locus_tag="VF308_07090"
     CDS             1109..2140
                     /locus_tag="VF308_07090"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013541074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HEX7436452.1"
                     /translation="MQAQRLIATARALMAGDRGLLAMDESTGTCNKRFAELGIALTEE
                     ARRAYRDMIVTTPHLGDAISGAILYDETIRQKTLRGLPFARALEDAGIIPGIKVDAGA
                     KALAAHPGELVTEGLDGLRERLADYATMGARFAKWRAVITIGGATPSRGCIEANAHAL
                     ARYAGLCQEAGLVPIVEPEVLMDGDHPLERCAAVTQAVLLAVFNQLDTQQVMLEGMLL
                     KPNMVLPGAACTEQSTVDDVADATVQCFSRAVPAAVPGIAFLSGGQAAGLASARLNAM
                     NVRFKSRLPWALSFSFARAIQQPALAAWRGVAANVPAAQQALFHRADCNRAARRGEYD
                     AQADAPRQA"
     gene            2161..>3454
                     /locus_tag="VF308_07095"
     CDS             2161..>3454
                     /locus_tag="VF308_07095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEX7436453.1"
                     /translation="MSDTLEQQCVDTLRFLSVAMVQKANSGHPGLPLGAAPMAYALWT
                     RQLKHNPTSPLWPDRDRFVLSAGHGSALLYSLLHVTGYDLSLDDIKQFRQWGSKAPGH
                     PERGHTAGVEVTTGPLGQGFANAVGMAIAEAHLAARYNREGHTVIDHHTWSIVSDGDL
                     MEGVASEAASLAGHLKLGKLICLYDNNSVTLSAGTDMTFSEDRPKRFEAYGWHTIEVG
                     DGNDLNAIEAALAAARAETTRPSLILVRTHLGFGSPEQDSFKAHGSPLGVADVKKTKE
                     ELGWPTEPPFFVPGPALARFREALVHGAKAEADWNGRMDAYAKEFPDMAKELRSRLNA
                     ELPGGWDADIPAFPADAKGMATRVAGGKVMNAIAPKLPALVGGSADLDPSTHTELKGQ
                     GDFNPPLLPGQDSEGSDAGGWGYTGRNVHFGVREHAMGG"
BASE COUNT          595 a         1206 c         1147 g          506 t
ORIGIN      
        1 gccgaggcac tgcgggcggc aacgacgcac cggcacgact acatcggcag ctacgtcgcc
       61 gacctcgaca acgtcatcga cttcgaagcg atccgcaatg ccaaggtgcg gatgggcgtc
      121 gacccgctcg gtggcgccgg cgtgcactat tgggcgcgca tcgccgagca ctacaagctc
      181 gacctgacgg tcgtgagcga ctcggtcgat gcgacctttc gtttcatgac cctcgactgg
      241 gacgggcaga tccgcatgga tccatcgtcg ccgtacgcga tgcagcgcct gctcgacatc
      301 aaggatcgct tcgacatcgc gttcgcctgc gataccgatc acgatcgcca cggcatcgtc
      361 acctcgaagg ccggcctgct cgctccgaat cactacctcg ccgtcgccat cgactacctg
      421 ttccagcacc ggccgcagtg ggcagccaat gccgccgtcg gcaagacggt cgtcagcacc
      481 aaccttatcg acctcgtgac gaagcgcctc ggccgcaggc tctacgaagt gccggtcggc
      541 ttcaagtggt tcgcggacgg cctgctcgac ggctcgctcg gcttcggcgg cgaagaaagc
      601 gccggcgctt cgttcctgcg ccgcgacggc accgtctgga ccaccgacaa ggatgggctg
      661 gcgccggcat tgctctccgc cgagatcacc gcgcgctgcg gtcgagatcc gggccagctc
      721 tacgccgagc tcgcgcagga gttcggcaac ccgctgaccg atcgggtcga ggcgccggcg
      781 accgtccagc agaagaagca gctcgcggcg ctcacgcctg cgcaactcgg cgcgagcgag
      841 ctcgccggcg aaaagatcga tagcgttctc ggcaacgcgc ccggcaatgg cgcggcgatc
      901 ggcggcatca aggtcatcgc caggagcggc tggttcgcgg cccgaccttc gggcaccgaa
      961 gacatctaca agatctacgc cgagagcttc gccggcgccg accacctgca gcggatcctg
     1021 gaggatgcgc aagcaatcgt cgaccgcgcg atcgcggcgc cggtcgccgc cgatgccagc
     1081 aacgccgcgc cgaagaagga ccactgacat gcaagcacag cgactcatcg ctaccgctcg
     1141 ggcgctcatg gccggcgacc ggggcctgct cgcgatggac gagagcaccg gcacctgcaa
     1201 caagcgtttc gcggagctcg gcatcgcgct gaccgaggaa gcgcgccgcg cctatcgcga
     1261 catgatcgtg acgacgccgc acctcggcga cgccatcagc ggcgccatcc tgtacgacga
     1321 gacgatccgc cagaagaccc ttcgcggcct gcctttcgcg cgtgcgctcg aggacgccgg
     1381 gatcatcccc ggcatcaagg tcgacgccgg cgccaaggcc cttgctgcgc atcccggcga
     1441 gctggtcacc gaaggcctcg acgggctgcg cgaacggctg gccgactacg ccacgatggg
     1501 ggcgcgcttt gcgaaatggc gcgcggtcat caccatcggt ggcgcgacgc cgagccgggg
     1561 gtgcatcgag gcgaacgccc acgcgctggc tcgctatgcg ggcctctgcc aggaagcagg
     1621 gctggtgccg atcgtcgagc ccgaggtgct gatggacggc gaccacccgc tcgagcggtg
     1681 cgcggcggtg acgcaagccg tcctgcttgc ggtgttcaac cagctcgaca cccagcaggt
     1741 gatgctcgaa ggcatgcttc tcaaacccaa catggtcctg cccggggcag cctgcaccga
     1801 gcagagcact gtcgacgatg tcgccgatgc gacggtccag tgcttctcgc gcgcggtgcc
     1861 ggcagcagtg cccggaattg ccttcttgtc gggcgggcag gcggcgggac tggcctcggc
     1921 gcgcctgaat gcgatgaacg tgaggttcaa gtcacgcctg ccctgggcgc tctcgttttc
     1981 gttcgcgcgc gccattcagc agccagcgct cgcggcgtgg cgcggcgtgg cggcgaacgt
     2041 tccggcagca cagcaagctc tctttcatcg cgccgactgc aatcgcgcgg cgcggcgcgg
     2101 tgagtacgac gcccaggccg acgctcctcg acaagcctga aacgcagcga agggaatccc
     2161 atgtcagaca cgctcgagca gcaatgcgtc gataccctgc gcttcctgtc ggtcgccatg
     2221 gtgcagaaag cgaacagcgg ccaccccggc ctgccgctcg gcgccgcgcc gatggcctat
     2281 gcgctgtgga cgcggcagct caagcacaac cccaccagcc cgctctggcc cgaccgcgac
     2341 cgcttcgtgc tctcggccgg ccacggctcg gcgctgctct acagcctgct gcatgtgacc
     2401 ggctacgacc tctcgctcga cgacatcaag cagtttcgcc aatggggcag caaggcgccg
     2461 gggcacccgg agcgtggcca tacggcgggc gtcgaagtca ccaccggccc gctcggccag
     2521 ggcttcgcca acgcggtcgg catggcaatc gccgaggcgc atctggccgc gcgctacaac
     2581 cgtgagggcc acacggtcat cgatcaccac acgtggtcga tcgtcagcga cggcgacctg
     2641 atggaaggcg tggcgtcgga ggccgcgtcg ctggccggtc acctgaagct cggcaagctg
     2701 atctgtctct acgacaacaa ctcggtgacg ctgtcggcgg gcaccgacat gaccttttcc
     2761 gaggatcggc cgaaacgctt cgaggcttac ggctggcaca cgatcgaagt cggcgacggc
     2821 aatgacttga acgcgatcga agcggcgctc gccgcggcgc gcgccgagac gacgcggcca
     2881 tcgctcatcc tcgtgcgcac gcatctcggc ttcggctcgc ccgagcagga cagcttcaag
     2941 gcgcatggct cgccgctcgg tgtcgccgac gtgaagaaga ccaaggaaga actcggctgg
     3001 ccgaccgagc cgcccttctt cgtgcccggg cccgccctgg ccagatttcg cgaagcgctc
     3061 gtgcacggcg cgaaggccga ggcggactgg aatggccgga tggatgccta cgcgaaagag
     3121 tttcccgata tggcaaagga gcttcgttcg cgcctgaacg cggagctgcc gggcggctgg
     3181 gacgccgaca ttccggcctt ccctgccgat gcgaaaggca tggcgactcg cgtcgcgggc
     3241 ggcaaggtga tgaacgcgat cgccccgaag ctgcccgcgc tggtcggcgg ctcggccgac
     3301 ctcgatccct cgacccacac cgagctgaaa ggacagggcg acttcaatcc gccgctgctt
     3361 cccggccagg acagcgaagg gtcggacgcg ggcggttggg gctacacggg ccgcaacgtc
     3421 cacttcggag ttcgcgagca tgcgatgggc ggca
//
LOCUS       DASVHM010000375         1726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_966582, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000375 DASVHM010000000
VERSION     DASVHM010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_966582"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..617
                     /locus_tag="VF308_07100"
     CDS             <1..617
                     /locus_tag="VF308_07100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436454.1"
                     /translation="DTALIAQRSPWGRWSDWFFQCYQLNLPLACGSVAWIAIGRELVR
                     ARRSAAPRDRIFWGGFVAGVILLGVATVGARDAWGLAHVCLQALVLLGVAFLAGRWGG
                     LSRAWRLALAMGATVDLLLGIVLHGGVQSYAFDHWFAPGQAPDDLLTSYNEVALLNLN
                     GKTVNHLAFLADGVTAPLALVLALLAAILMLAVVRAWPRGRRAH"
     gene            733..1686
                     /locus_tag="VF308_07105"
     CDS             733..1686
                     /locus_tag="VF308_07105"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX7436455.1"
                     /translation="MTASVPVVALVIPVFNEAAVLPELFARLAALFDGGHGCAWRAVL
                     VDDGSRDQSADLIRAQIARDPRFELVELSRNFGFQAALSAGLAHARGADAIVTMDADL
                     QDPPEVIPALVAAWREGAEVVRATRRTRAETGLRRMGFDFFHVIFGQLSDYPVEPNSG
                     TFGLLGRAAVDAFHQLPERNRFFPGLRAWIGFPTADVPYDRQERAAGKPQQTFRRLVR
                     YALDGVFSFSHLPLRLLTYTGLFIGTIGFCLGLYYVVKRLIAIETAPTGFTTLAALVL
                     FLGGVQLIAIGVLGEYLGRIYDEVKQRPVYLVKPPRADDRA"
BASE COUNT          207 a          644 c          557 g          318 t
ORIGIN      
        1 tggacaccgc gctcatcgcg cagcgcagcc catggggccg gtggagcgac tggtttttcc
       61 agtgctacca actcaacctc ccgcttgcct gcggcagcgt cgcgtggatt gccatcgggc
      121 gcgaactcgt ccgcgcgcgc cgcagcgcgg cgccgcgcga ccggattttc tggggcggtt
      181 tcgtggcagg cgtcatcctg ctcggcgtgg cgacggtcgg cgcccgcgac gcatggggtc
      241 tcgcgcacgt ctgcctgcag gcgctcgtgc tgctcggcgt cgcgtttctc gccgggcggt
      301 ggggcgggct cagccgcgcg tggcgcctcg ccctggccat gggcgcgacc gtcgacctgc
      361 tgctcggcat cgtgctgcac ggtggcgtgc aaagctacgc cttcgaccac tggttcgccc
      421 cgggccaggc acccgacgac ctcctgacaa gttacaacga ggtggctctg ctgaacctca
      481 acgggaaaac cgtcaaccac ctcgcctttt tggccgacgg tgtcaccgcg ccgctcgcgc
      541 ttgtgctcgc gctgctggcc gcgatcctca tgctcgccgt ggtgcgcgcc tggcctcgcg
      601 gccggcgtgc gcattgacgc cgcttatgcc ttcctccccg ccattcgccg tgcgaccgcc
      661 cgcgcttgtg ctcgcgctgc gggccacgcc gcccatgctc gccggagcac gcgcccacgc
      721 cttttctttg ccatgaccgc ctccgtcccc gtcgtcgccc tcgtcattcc cgtcttcaac
      781 gaagccgccg tgctgcccga gctcttcgcg cggctcgctg cgctcttcga cggtggccac
      841 ggctgcgcgt ggcgcgccgt gctcgtcgac gatggcagcc gcgatcagtc cgccgatctc
      901 atccgggcgc agatcgcgcg tgatccgcgg tttgaactcg tcgaactctc gcgtaacttc
      961 ggctttcagg ccgcgctgtc cgccggactg gcgcacgcgc gcggcgccga cgcgattgtg
     1021 accatggatg ccgacctgca ggatccaccg gaggtgattc ccgcgctcgt cgccgcgtgg
     1081 cgcgagggcg ccgaggtcgt gcgcgcgacg cggcgcacgc gcgccgagac cgggctgcgg
     1141 cgcatgggct ttgatttttt tcacgtcatc ttcggccagc tttcggatta tccggtcgag
     1201 ccgaacagcg gcacgttcgg cctgctcggg cgcgcggcgg tggacgcgtt tcaccagttg
     1261 cccgagcgca accgcttctt ccccggcctg cgcgcgtgga tcggttttcc gacggccgac
     1321 gtgccctacg atcggcagga gcgcgccgcg ggcaagccgc agcagacgtt tcgccggctc
     1381 gtgcgctacg cgctcgacgg cgtcttcagt ttctcccacc tgccgctgcg gctgctgacc
     1441 tacacgggcc tgtttatcgg cacgatcggc ttctgcctcg gcctctacta cgtcgtgaaa
     1501 cgcctgatcg ccatcgagac cgcgccgaca ggcttcacga ccctcgcggc gctcgtgctc
     1561 tttctcggcg gcgtgcaact catcgccatc ggcgtgctcg gcgaatacct cggccgcatc
     1621 tacgacgagg tgaagcaacg ccccgtctac ctcgtgaaac cgccgcgcgc ggacgaccgg
     1681 gcatgacgct aatcgcgtca ccagccacaa cggtggctgc cacgcc
//
LOCUS       DASVHM010000376         2266 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_605379, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000376 DASVHM010000000
VERSION     DASVHM010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_605379"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..373)
                     /gene="upp"
                     /locus_tag="VF308_07110"
     CDS             complement(<1..373)
                     /gene="upp"
                     /locus_tag="VF308_07110"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003819789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEX7436456.1"
                     /translation="MPVIEVRHPLVKHKVGLLRERDISTKKFREITSELARLLTYEAT
                     ADFPLEKTTVECWSGPAEVEQISGKKVTVVPILRAGLGMLDGVLDLIPSAKVSVVGLA
                     RNHETLQPENYFERFVGQLDER"
     gene            complement(383..1120)
                     /gene="rlmB"
                     /locus_tag="VF308_07115"
     CDS             complement(383..1120)
                     /gene="rlmB"
                     /locus_tag="VF308_07115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEX7436457.1"
                     /translation="MSKQILFGFHAVTVRLKTAPRTVLEVHVDAARRDQRMRQFVDRV
                     TAAGVRLVESDDVRLAKMSGTQRHQGVVARAEAIAVSHSLDDTLDAVEGAPLLLVLDG
                     VTDPHNLGACLRVADGAGANAVIAPKDHAVGLNATVAKVASGAADTVPYFMVTNLART
                     LNELKERDIRVVGTSDDAQKTLYQLDLTGPVALVLGAEGGGMRQLTARTCDELVRLPM
                     RGAVESLNVSVASAVCLYEAVRQRLHA"
     gene            1178..2005
                     /locus_tag="VF308_07120"
     CDS             1178..2005
                     /locus_tag="VF308_07120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436458.1"
                     /translation="MAALPFWGNENVMQSLGLSPDLLAYGDSWFWYPNNDLLIPINAI
                     WAGTKTLLAKGKNGAELREMVGGTPRLWNDFKSAMSGYPTIQCVLLSAGGNDFAGLEH
                     FQVLLKLDCSAATSVDDCFDPGDPAHGIERQPWRMLRELATNYQRLIDFVRSVKPAVP
                     IVLQDYDYAIPTGIGFGGIKGGIFGLGDWLQQPMIERQVPAALQNDVVRRLMDDFITI
                     LKALASPAQNHDVYLVETAGTLGPSDWANEMHPTPAGFNRLAQRFRPLLQQLIPGTP"
     gene            complement(2002..>2266)
                     /locus_tag="VF308_07125"
     CDS             complement(2002..>2266)
                     /locus_tag="VF308_07125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="heparan-alpha-glucosaminide N-acetyltransferase
                     domain-containing protein"
                     /protein_id="HEX7436459.1"
                     /translation="RLTNWVGLVTHRPLTEDYVPLLPWLGVMWWGVAAGQWVLAQRPR
                     WLAGALPRAARPLAVLGRWSLAFYMLHQPVLIGLLMLVLWLSR"
BASE COUNT          372 a          786 c          754 g          354 t
ORIGIN      
        1 tgcgctcgtc gagctggccg acgaagcgct cgaaatagtt ctcgggctgc agcgtctcgt
       61 ggttgcgggc gaggccgacg acgctcacct tcgcactcgg aatcaggtcg agcacgccgt
      121 cgagcatgcc gaggccggcg cgcaggatcg gcaccacggt gaccttcttg ccgctgatct
      181 gctcgacctc ggccgggccg ctccagcatt cgacggtcgt cttttcgagc gggaaatcgg
      241 cagtcgcctc atacgtcagg aggcgcgcga gttcgctggt gatctcgcgg aatttcttgg
      301 tcgagatgtc gcgctcgcgc agcaggccga ccttgtgttt cacgagcgga tgtctgactt
      361 cgatcaccgg catgtcaggg cctcaggcat gcaggcgctg gcgcaccgct tcatagagac
      421 acactgcgct cgccaccgac acgttgaggc tctcgaccgc accgcgcatc ggcaggcgca
      481 cgagctcgtc gcaggtgcgc gcggtgagct ggcgcatgcc tcccccttcg gcgccgagca
      541 ccagcgcgac cgggcccgtc aggtcgagct ggtagagcgt cttctgcgcg tcgtcggagg
      601 tgccgacgac gcggatgtcg cgctccttca gttcgttgag cgtgcgggcc aggttcgtga
      661 ccatgaaata cgggaccgtg tcggccgcgc cgctcgcgac cttcgcgacc gtcgcgttga
      721 ggccgaccgc atgatccttc ggggcgatca ccgcgttcgc gccggcgccg tcggccaccc
      781 gcaggcacgc gccgaggttg tgcggatcgg tcacgccgtc gagcaccagt agcagcggcg
      841 cgccctcgac ggcgtcgagc gtgtcgtcga gcgagtggct gacggcgatg gcctcggccc
      901 gggcgacgac gccctggtga cgctgcgtcc cgctcatctt cgccaggcgc acatcgtcgc
      961 tctcgaccag gcgcacgccg gcggccgtca cccggtcgac gaactggcgc atgcgctggt
     1021 cgcgccgcgc cgcatcgacg tgcacctcga gcaccgtacg cggcgcggtc ttgagccgca
     1081 ccgtcaccgc gtggaacccg aacaggatct gcttggacat gcgccgatgg tagccggggc
     1141 gcgtacagtg tcgctgaccg aaccgaagga ggacgagatg gctgcacttc ccttctgggg
     1201 caacgagaac gtgatgcaat cgctcgggct gagcccggat ctgctcgcct acggcgacag
     1261 ctggttctgg taccccaaca acgacctgct gattccgatc aacgcgatct gggcggggac
     1321 gaagaccctc ctcgccaaag gcaagaacgg cgccgaactg cgtgaaatgg tcggcggcac
     1381 gccccggctc tggaacgact tcaagagcgc gatgagcggc tatccgacga tccagtgcgt
     1441 gctgctcagc gccggcggaa acgacttcgc cgggctcgaa cacttccagg tgctgctcaa
     1501 actcgattgc tcggccgcga cgagcgtcga cgactgcttc gacccgggcg atccggccca
     1561 cggcatcgaa cgccaaccgt ggcggatgct gcgcgaactg gcgaccaact accagcgcct
     1621 gatcgacttc gtccgttcgg tcaaaccggc ggtcccgatc gtgctgcagg actacgacta
     1681 cgcgatcccg accggcatcg gcttcggcgg catcaagggc ggcatcttcg gcctgggtga
     1741 ctggctgcag caaccgatga tcgagaggca ggtgccggcc gccttgcaga acgacgtggt
     1801 gcgccgcctg atggatgact tcatcacgat cctcaaggcg ctcgcgagcc cggcccagaa
     1861 ccacgacgtc tacctggtcg agaccgcggg cacgctcggc ccgtcggact gggccaacga
     1921 gatgcacccc acaccggccg ggttcaaccg gctcgcccag cgcttccggc cgctgcttca
     1981 gcagctgatt cccggcacgc cctagcggct cagccagagc accagcatca gcaacccgat
     2041 cagcaccggc tggtgcagca tgtagaacgc gaggctccag cggccgagaa cggcgagtgg
     2101 tcgcgccgct cgtggcagcg cgccggcaag ccaccgcggc cgctgcgcga gtacccattg
     2161 gcccgcggcc acgccccacc acatgacgcc gagccagggc agcagcggca cgtagtcttc
     2221 ggtcaggggc cggtgcgtga cgagtccgac ccagttggtg agccgc
//
LOCUS       DASVHM010000377         2264 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_459295, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000377 DASVHM010000000
VERSION     DASVHM010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459295"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1509)
                     /locus_tag="VF308_07130"
     CDS             complement(<1..1509)
                     /locus_tag="VF308_07130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX7436460.1"
                     /translation="MKIVCIGGGPSGLYFALLMKQQNPAHDITVVERNKPYDTFGWGV
                     VFSDQTLGNLQAADPPSAAQILDAFNHWDDIEVNIRGHKFRSSGHGFCGIGRKRLLNI
                     LQRRCEDLGVKLAFETDVQDDAQYPDADLIIASDGLNSRIRARHAATYRPDIDMRDCR
                     FVWLGTTRLFEAFTFAFEETEWGWFQAHAYRFDDDTSTFIVETPEHVWRAAGLETMEK
                     EDAIAFCEKLFAPYLEGHKLMSNASHLRGSAQWIRFPRVVCQTWVHDNGRAPVVLMGD
                     AAHTAHFSIGSGTKLALEDSIELARCIGRTPDDLNGALQAYEAVRSIEVLRIQNAARN
                     STEWFEHVDRYVNLPPEQFAYSLLTRSQRISHENLRLRDKDYVEDYEDWIAERAGVAR
                     SPLQHSIPPMLTPFTVRGVTLKNRVVVSPMAQYSCVEGLPGDYHLVHLGARAMGGAGM
                     VVAEMTCPSPDARITPACPGLWNVAQRDGWKRIVDFVHANSDAKIALQLGHAG"
     gene            complement(1695..>2264)
                     /locus_tag="VF308_07135"
     CDS             complement(1695..>2264)
                     /locus_tag="VF308_07135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007870921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7436461.1"
                     /translation="RQGRIRLGGQDITGASPRDLLIKHGVAFVPQGRNLFGRLSAWQN
                     LELGGITLGMKTTHERIPEVLARFPRIARRMHSQASALSGGEQKQLEIGRALLLRPRV
                     LLIDEPSIGLSPLLVADVFRLLRDLADQGATVLMVEQNVKSALKISDEAIALESGRRV
                     LQRPAAELLADPHLERLFLGGTVPAPRGG"
BASE COUNT          348 a          733 c          793 g          390 t
ORIGIN      
        1 gccggcgtgg ccgagctgca acgcgatctt cgcatcgctg ttcgcgtgca cgaaatcaac
       61 gatgcgcttc cagccgtcac gctgcgccac gttccacagc cccgggcagg ccggggtgat
      121 gcgcgcgtcg ggcgaggggc aggtcatctc ggcgaccacc atgccggcac cacccatggc
      181 gcgtgcgccg aggtgcacga ggtggtagtc gccgggcagg ccctcgacgc acgagtactg
      241 cgccatcggc gagacgacga cccggttctt cagggtcacg ccacgcaccg tgaacggcgt
      301 gagcatcggc gggatcgaat gctgcagcgg actgcgcgcc acgccggcgc gctcggcgat
      361 ccagtcctcg tagtcctcga cgtagtcctt gtcgcgcagg cgcaggttct cgtggctgat
      421 gcgctggctg cgcgtcagca gcgaataggc gaactgttcg ggcggcaggt tgacgtagcg
      481 gtcgacgtgc tcaaaccact cggtcgaatt gcgcgcggcg ttctggatcc gcagcacctc
      541 gatgctgcgc accgcctcgt aggcctgcaa tgcgccgttc aggtcgtcgg gcgtgcggcc
      601 gatgcagcgg gcgagctcga tcgagtcttc gagcgcgagc ttggttccgg agccgatcga
      661 gaagtgcgcc gtgtgcgcgg cgtcgcccat cagcacgacc ggggctcggc cgttgtcgtg
      721 gacccaggtc tggcagacca cgcgcgggaa ccggatccac tgcgccgagc cgcgcaggtg
      781 gctcgcgttc gacatcaact tgtgaccctc gaggtagggc gcgaagagtt tctcgcagaa
      841 cgcgatcgcg tcctcctttt ccatcgtctc gaggccggcg gcgcgccaga cgtgttcagg
      901 cgtctcgacg atgaaggtcg aggtgtcgtc gtcgaagcgg taggcgtggg cctggaacca
      961 gccccactcg gtttcctcga aggcgaaggt gaacgcctcg aagagcctgg tcgtgccgag
     1021 ccagacgaag cggcagtcgc gcatgtcgat gtcgggacga taggtcgcgg cgtgcctggc
     1081 gcggatgcgg ctgttcaggc cgtcgctagc gatgatcagg tcggcgtccg gatactgcgc
     1141 gtcatcctgc acgtcggtct cgaacgccag cttcacgccg aggtcttcgc agcgccgctg
     1201 caggatgttg aggaggcgct tcctgccgat gccgcagaag ccgtgcccgc tggacctgaa
     1261 cttgtggccg cggatgttga cctcgatgtc gtcccagtgg ttgaaggcgt cgaggatctg
     1321 tgccgcgctc ggtgggtcgg ccgcctgcag gttgccgagc gtctggtcgg agaacaccac
     1381 gccccagccg aaggtgtcgt agggcttgtt gcgttcgacg acggtgatgt cgtgggccgg
     1441 gttctgctgc ttcatcagca gtgcgaaata gagccccgac gggccgccgc cgatgcagac
     1501 gatcttcatg cgtgctccag gctccgcggg cctcttgcgc gcgcgccgtt cgcccgctgc
     1561 agcgggagcg agcgcgccgg catctggcgt gtatgggtca tggctgaata gtttagtggt
     1621 aaagcagtct agtccagcaa acggacgttg gcaagcgcaa gcgcttcatc gccaatcccg
     1681 gcttcgaccg cgacttaccc tccccgcggc gccggcactg tgccgccgag gaacagccgc
     1741 tcgaggtgcg gatcggcgag caactcggcg gcgggtcgtt gcagcacgcg gcgacccgat
     1801 tcgagtgcga tcgcctcgtc ggaaatcttc agcgcgctct tcacgttctg ctcgaccatc
     1861 agcaccgttg cgccctggtc ggccagatcg cgcagcaacc tgaacacatc ggccacgagg
     1921 agcggcgaca ggccgatcga aggctcgtcg atgagcagta ccctgggacg cagcagcaag
     1981 gcgcgcccga tctcgagctg cttttgctcg ccgcccgaca gcgccgaggc ctggctgtgc
     2041 atgcgcctcg cgatgcgcgg aaagcgcgcc agcacttcgg ggatgcgctc gtgcgtggtc
     2101 ttcatgccga gcgtgatgcc gccgagctcg aggttctgcc acgcgctgag ccggccgaac
     2161 aggttgcggc cctgcggcac gaaggcgaca ccgtgtttga tcagcaggtc cctgggcgac
     2221 gcgccggtga tgtcctggcc gccgagccgg atgcggccct ggcg
//
LOCUS       DASVHM010000378         5834 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_389012, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000378 DASVHM010000000
VERSION     DASVHM010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5834
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389012"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1775
                     /locus_tag="VF308_07140"
     CDS             <1..1775
                     /locus_tag="VF308_07140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017877834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7436462.1"
                     /translation="AVFIPIFFMPGVIGLLFHEFAVIVALAIVASAFVSLTLVPMLAS
                     RFLSDEAHKKRPGTLVRSFERGFNAVLGSYERSLDLALRHRGVVLLVALATFIATAWL
                     FVTIPKGFFPEEDIGQITVSTEASEDTSFPEMVRLQDRAAALIRDDPNVRNVSSFNGG
                     TGSQNTGRMFISLKDRGERAPMKQVIEGLRRKLRDLAGITVFMRPIQNLQLGGRPSKA
                     QYQYILQSVRADEINGWAIKLQEKMRPDPLFRDVTSDSQLRGLQASLKIDRDRANTLG
                     VSIDSVRSALYSAFGERQVSTIYTATDSYQVILEVVPGAKQDENAFNNIYVRASTGAL
                     VPMSAFTTVERSIGPTAINHVGQLQAVTVSFNLAPGAALGDATTKIEQYRDQLQMPAS
                     IITSYGGDAAVFKSSQGSQAILIIAALLVIYVLLGVLYESYVHPLTILAGLPSAAVGA
                     LLMLKLFDMDLTLIATIGILLLIGIVKKNAIMMIDFALDAQRTRGMAAADAIREACLL
                     RFRPIMMTTLAALMGALPIAIGVGAGAELRQPLGLAVVGGLVFSQAITLYITPVIYLA
                     LDRFSGKGPVTTPEVAATTAEARV"
     gene            complement(1779..2300)
                     /locus_tag="VF308_07145"
     CDS             complement(1779..2300)
                     /locus_tag="VF308_07145"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX7436463.1"
                     /translation="MPITPPCVVNLTWRLHDAQGQPIDELTEPVEFFVGGDDLLPKVE
                     EALTGHETGYEVVLHLEPEHAFGEYDSSLVFFEERSIFPETVEVGMQFDGVPEGAATE
                     GMPADAIYNVTEVYPDHVVLDGNHPLAGMALRLDLTVQGVREATEAEIEAGSVGQPAV
                     MVLNAPPPAPQLH"
     gene            2325..3470
                     /locus_tag="VF308_07150"
     CDS             2325..3470
                     /locus_tag="VF308_07150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019574298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX7436464.1"
                     /translation="MDIALPTPLLGGRSPREFMRRHWQKKPLLIRAAIPDAATIVARN
                     EVFGLAARDDVESRLVVHGGERWSLRHGPFARRALPGLKRSGWTLLVQGADLHLDAAH
                     RLLARFRFVPDARLDDVMLSFATDCGGVGPHIDSYDVFLLQVRGRRRWRIGRSKAPEL
                     RDDVPLKILSNFVATQEWVLDPGDMLYLPPGWAHDGVAEGEAITASIGFRSAGGATLG
                     SEVLQHLLDAVEPADDETLYADPDQDATAEPGRIPAALQRFADASVARLVHARRARAC
                     ALGEALSEPKAGVWFDPGVAGELRSGVRLDRRTRMLYDDAHVFINGEAYRAAGRDGKI
                     VRRLADRKVLARRHVAALGAEAHALVEQWLAAGWLRPEPDPKLHEED"
     gene            3472..3960
                     /locus_tag="VF308_07155"
     CDS             3472..3960
                     /locus_tag="VF308_07155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436465.1"
                     /translation="MNAPTHRLITSRGEFHDALRSAFAEAAAAGAREIWLCDANFADW
                     PLSERAVIENLTRWINSGRRLTVLAQTFDEVVRRHSHWAEWRRQWSHVVQCRTETELE
                     VADFPTICLVADVISVRLVDPVHYRGLASHEGADAKICREAIDAVLQRSIETFPVTTL
                     GL"
     gene            4109..4369
                     /locus_tag="VF308_07160"
     CDS             4109..4369
                     /locus_tag="VF308_07160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436466.1"
                     /translation="MKKALLLVSMVAAISFAACSKKEETVVAPAPSATPAPTTVVVTP
                     PAADASAAGMAASAADSSAMAANSSAMAASDSASAAADAMKK"
     gene            complement(4446..5225)
                     /locus_tag="VF308_07165"
     CDS             complement(4446..5225)
                     /locus_tag="VF308_07165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010464013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7436467.1"
                     /translation="MRFCSLGSGSTGNATVVEASGVTRTSRVLIDCGFSLRELDLRLA
                     RAGLQASDLDAVFVTHEHGDHIGSAIALARRNGVPLWMSRGTWRAVREPELPTLIRFA
                     RDGEAITIGALELHPFTVAHDAEEPLQLRCSDSLRQLGLLTDAGSITPHMLANLQGCN
                     ALLLECNHDRAMLAASRYPASLKARIGGRFGHLANDTSAEILAACLHDGLRHLVAAHL
                     SQENNRPELVRESLAATWHGAREEIVIAHPQRGFAWITIDG"
     gene            complement(5275..>5834)
                     /gene="bamC"
                     /locus_tag="VF308_07170"
     CDS             complement(5275..>5834)
                     /gene="bamC"
                     /locus_tag="VF308_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HEX7436468.1"
                     /translation="ITHRGMEEVYIGQNKESTIWQPRPSDPQLEGEFLSRLMIKLGTK
                     EEVARTATAAPAEGGPARARVLAGRPAATLQLDDGFDRAWRRVGLALDRSGFTVEDRD
                     RAQGLYFVRYVDPKFAGREEPGFFSRLFSFGRKSDDASTLSRYRVSVKAEGDTSTVSV
                     LDAKGAPENGDVGKRIVGLLIDDLK"
BASE COUNT          896 a         1975 c         1946 g         1017 t
ORIGIN      
        1 tcgcggtgtt cattccgatc ttcttcatgc cgggcgtgat cggcctgctg ttccacgagt
       61 tcgcggtgat cgtcgcgttg gcgatcgtcg cctcggcgtt cgtctcgctc acgctcgtgc
      121 caatgctcgc gagccgcttc ctcagcgacg aagcgcacaa gaagcggccc ggcacgctcg
      181 tccggtcgtt cgagcgcggc ttcaacgccg tcctgggcag ctatgaacgc tcgctcgacc
      241 tggcgctgcg ccaccgcggc gtcgtgctgc tggtcgcgct cgccaccttc atcgcgacgg
      301 cttggctctt cgtgacgatc ccgaagggtt tctttcccga ggaggacatc ggccagatca
      361 ccgtctcgac cgaggcctcg gaggacacct cgtttcccga gatggtccgg ctgcaggacc
      421 gcgcggcggc gctgatccgc gacgatccga acgtgcgcaa cgtcagttcg ttcaacggcg
      481 gcaccggctc gcagaacacc gggcgcatgt tcatctcgct gaaggaccgg ggcgagcggg
      541 cgccgatgaa gcaggtgatc gaaggcctgc gcaggaagct ccgcgacctg gccggcatca
      601 cggtcttcat gcggccgatc cagaacctcc agctcggcgg ccggccgagc aaggcgcagt
      661 accagtacat cctgcagagc gtgcgcgccg acgagatcaa cggctgggcc atcaagctgc
      721 aggagaagat gcggcccgat ccgctcttcc gcgacgtgac cagcgactcg cagctgcgcg
      781 gcctgcaagc ctcgctgaag atcgaccgcg atcgcgccaa caccctcggc gtgtccatcg
      841 acagcgttcg ctccgcgctc tacagcgcat tcggcgagcg tcaggtctcg accatctaca
      901 ccgccaccga cagctaccag gtgatcctcg aagtcgtgcc gggcgccaag caggacgaga
      961 acgccttcaa caacatctac gtgcgcgcgt cgaccggcgc gctcgtcccg atgtcggcct
     1021 tcacgaccgt cgagcgcagc atcggcccga ccgcgatcaa ccacgtcggc cagttgcagg
     1081 cggtgacggt ctctttcaac ctcgcgccgg gcgccgccct cggcgatgcg acgacgaaga
     1141 tcgagcagta ccgcgaccag ctccagatgc cggcctcgat catcaccagt tacggcggcg
     1201 acgcggcggt gttcaagagt tcgcaaggca gccaggcgat cctgatcatc gccgcgctgc
     1261 tcgtgatcta cgtgctcctc ggcgtgcttt acgagagcta tgtgcacccg ctgacgatcc
     1321 tcgccggtct gccctcggcg gcggtcggcg cgctcttgat gctcaagctc ttcgacatgg
     1381 acctgacgct gatcgccacg atcggcatcc tgctgctgat cggcatcgtc aagaagaacg
     1441 cgatcatgat gatcgacttc gccctggacg cgcaacgaac gcgcggcatg gcggctgccg
     1501 atgcgattcg cgaggcctgc ctgctgcgct ttcggccgat catgatgacg acgctcgccg
     1561 cactgatggg tgcgctgccg atcgcgatcg gcgtcggcgc cggcgccgag ctgcgccagc
     1621 cgctcggcct cgccgtggtc ggcggattgg tcttctcgca ggcgatcacg ctctacatca
     1681 cgccggtgat ctacctcgcg ctcgaccgct tcagcggcaa ggggccggtg acgacgccgg
     1741 aggtcgccgc gacgacggcc gaagcccggg tctgaaccct agtgcagctg cggcgcgggc
     1801 ggcggcgcgt tcagcaccat gacggccggc tggccgacgc tgccggcctc gatttccgct
     1861 tcggtcgctt cgcgcacgcc ctgaaccgtc aggtcgagcc gcagcgccat gccggcgagc
     1921 ggatggttgc cgtcgagcac cacgtggtcg gggtagacct cggtcacgtt gtagatcgca
     1981 tcggccggca tgccttcggt cgcagcgcct tcgggaacgc cgtcgaactg catgccgacc
     2041 tcgaccgtct ccggaaagat ggaacgctct tcgaagaaga cgaggctcga gtcgtattcg
     2101 ccgaaggcgt gttcgggctc gagatgcagc accacttcgt atccggtctc gtggccggtc
     2161 agggcttcct cgaccttggg cagaaggtcg tcgccgccga cgaagaactc gaccggctcg
     2221 gtcagttcgt cgatcggttg accttgcgca tcgtgcaggc gccaggtgag gttgacgacg
     2281 cagggagggg tgatcggcac ccgacaatca tcgcacaatc attcatggac attgccctgc
     2341 caaccccttt gctcggcggc cgttcgccgc gcgaattcat gcgccggcat tggcagaaaa
     2401 agccgctcct gatccgcgct gcgatccccg atgccgccac gatcgtcgct cgcaacgagg
     2461 tcttcggact ggccgcccgc gatgacgtcg aatcgcgcct ggtcgtgcac ggcggcgagc
     2521 gctggtcgct gcgccacggg ccgttcgcgc ggcgcgcctt gccgggcctg aagcggtcgg
     2581 gatggacctt gctcgtgcaa ggcgccgacc tgcacctcga cgcggcccat cgcctgctcg
     2641 ccaggtttcg tttcgtgccc gacgcgcgcc tcgacgatgt gatgttgtcc ttcgcgaccg
     2701 attgcggcgg cgtcgggccg cacatcgatt cctacgacgt cttcctgctc caggtgcgcg
     2761 ggcgcaggcg ctggaggatc ggccggtcga aagctccgga gctgcgcgac gacgtgccgc
     2821 tgaagatcct gtcgaacttc gtcgcgacgc aggagtgggt gctcgatccc ggcgacatgc
     2881 tgtacctgcc gccgggttgg gcccacgacg gcgtggccga gggcgaggcc atcaccgcgt
     2941 cgatcgggtt tcgctccgcg gggggtgcga cgctcggctc ggaagtcctc cagcatctgc
     3001 tagacgcggt cgagcccgcg gacgacgaaa cgctctacgc cgatcccgat caggacgcca
     3061 ccgccgaacc ggggcgcatt ccggccgccc tgcaacgctt cgccgacgca tcggtcgcac
     3121 gcctcgtcca tgcgcgccgt gcgcgcgcct gcgcgctggg cgaggcgctg agcgaaccga
     3181 aggcgggcgt gtggttcgat ccgggtgtgg cgggcgagct gcgctcgggc gttcgcctcg
     3241 accggcgcac ccgcatgctc tacgacgatg cccatgtgtt catcaacggc gaggcctatc
     3301 gcgccgcggg ccgtgatggg aagatcgtgc ggcgcctcgc cgatcgcaag gtgctggcgc
     3361 ggcgccacgt cgccgcgctc ggcgccgagg cccatgccct ggtcgaacaa tggctggcag
     3421 cgggatggct gcggcccgag cccgatccga agctccacga ggaagactga catgaatgcg
     3481 ccgacccacc gactcatcac ttcgcgcggc gaattccacg acgcattgcg cagcgccttc
     3541 gccgaggcgg ccgcggcggg cgcgcgcgag atctggttgt gcgacgcgaa tttcgccgac
     3601 tggccgctca gcgaacgcgc cgtcatcgaa aacctgaccc gctggatcaa ttcggggcgc
     3661 cgcctgacgg tgctcgcgca gaccttcgac gaggtcgtgc gccgtcattc acactgggcg
     3721 gagtggcgtc gccagtggtc gcatgtggtg caatgccgca ccgagaccga gctcgaggtt
     3781 gcggattttc cgaccatctg cctggtcgcc gacgtcatca gcgtgcgtct tgtggatccg
     3841 gttcactatc gcggcctggc ctcgcacgag ggcgctgatg cgaagatctg ccgggaagcg
     3901 attgatgctg ttttgcaacg ctcgatcgag acgttcccgg tcaccacgct gggactctag
     3961 ggaaagcacc taacacgtct ataattgagg gctaggcacc ggaatgctcg agctttccct
     4021 tgtcttcgaa cgctggggct ctgcgcaagg agggttccca caattaccgg taattgtttg
     4081 accccttttt gacttctgag gaacaagtat gaaaaaagca ctactgttgg tttcgatggt
     4141 cgccgccatt tcgtttgctg catgcagcaa gaaggaagag accgttgtgg cgcctgctcc
     4201 gtctgccacg cccgctccga cgaccgtcgt ggtcaccccg ccggccgccg atgcttcggc
     4261 cgccggcatg gcagcgtccg ctgccgattc gtcggcgatg gccgccaatt cttcggcgat
     4321 ggccgccagc gattcggctt cggccgccgc cgacgcgatg aagaagtaaa ccggttttcc
     4381 ggtctgccca gaaagccgcc ttcgggcggc tttttgttgg ggcctgtgaa ccggctcgcg
     4441 tcgctttacc cgtcgatggt gatccaggcg aagccgcgct gcggatgggc gatgacgatc
     4501 tcttcgcggg ctccatgcca ggtggcggcc agggactcgc gcaccagctc gggccggttg
     4561 ttctcctggc tcaggtgcgc tgcgaccagg tggcgcaggc cgtcgtgcag gcaggcggcg
     4621 aggatctcgg ccgacgtgtc gttggcgagg tgaccgaagc gcccgccgat gcgcgccttg
     4681 agcgacgccg gatagcgcga ggcggcgagc atcgcgcggt cgtgattgca ttcgagcagc
     4741 agggcgttgc agccctgcag attcgccagc atgtgcgggg tgatggagcc ggcgtcggtc
     4801 agcaggccca gctgccgcag gctgtcggag cagcgcagtt gcagcggctc ctcggcatcg
     4861 tgggcaacgg tgaacggatg cagttcgaga gcgccgatcg taatcgcctc gccgtcgcgc
     4921 gcgaagcgga tcaatgtcgg caactccggt tcgcgcaccg cgcgccaggt gccgcggctc
     4981 atccacagcg gtacaccgtt gcgccgcgcc agggcgatgg cgctgccaat gtggtcgccg
     5041 tgctcgtggg tgacgaacac ggcgtcgagg tcgctcgcct gcaggcccgc gcgggccagc
     5101 cgcaggtcga gctcgcgcag ggaaaagccg cagtcgatca gcacccggct ggtccgcgtg
     5161 acaccgctcg cttcgacgac cgtggcattg cccgtgctgc cgctgcccag gctgcaaaac
     5221 cgcatggcgc ctacgcgttc gtcacgccaa aggcgccatt gctgcgcgtc cggctcactt
     5281 caggtcgtcg atcaggaggc cgacgatgcg cttgccgacg tcgccgtttt ccggggctcc
     5341 cttcgcgtcc aggaccgaca ccgtgctggt gtcgccttcg gccttgaccg aaacgcggta
     5401 gcgcgagagc gtcgacgcgt cgtcgctctt ccggccgaag ctgaagagcc tggagaagaa
     5461 gcccggctct tcccggccgg cgaacttggg atccacatag cgcacgaagt agaggccctg
     5521 ggcccggtcg cggtcttcca ccgtgaagcc gctgcggtcg agcgcgaggc cgacgcggcg
     5581 ccaggcccga tcgaagccat cgtcgagctg gagcgttgcc gccggtcgcc cggccagcac
     5641 acgggcccgt gcggggccgc cctcggccgg agcggccgtc gcggtgcgag ccacctcttc
     5701 cttggtgccc aacttgatca tcagacgcga caggaattcg ccttccagtt gcgggtcgga
     5761 cgggcgcggt tgccagatcg tgctctcctt gttctggccg atgtagacct cttccatccc
     5821 gcggtgcgtg atgt
//
LOCUS       DASVHM010000379         2154 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_314557, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000379 DASVHM010000000
VERSION     DASVHM010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314557"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..1639)
                     /gene="groL"
                     /locus_tag="VF308_07175"
     CDS             complement(8..1639)
                     /gene="groL"
                     /locus_tag="VF308_07175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009238928.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEX7436469.1"
                     /translation="MSAKQVLYREDARNRIRRGVDTLAEAVMVTLGPRGRTVLLDREF
                     GPPQIVNSGVVVAKAIELEDRFENMGAQLLREVAARTSEMAGDGTTTAIVLAHAMIGE
                     GLKFLAAGMNPMDLKRGIDRAVESVVQELKTIAQPCTASQEIAHVAAISANNDRSIGD
                     LVARAMDKVGREGAISIEDGSGMVSELEVVEGLQFDRGYLSPYFINNAEKQAAVLENA
                     AIVLCDQKLSTVTDLVPLLEAAAKSGAPLLVIAEEVDADALATLVINSVRGVVKTCAV
                     KAPGFGDRRKAMLQDMAVLTGGTVIASDLGLTLAKATLEHLGRARRVEVDKDSTTIIG
                     GAGDAKAIAERIAAIRKDRDAQTSDYERKHLDERIAKLSGGVALIKVGAATETELKER
                     KLRVEDALHATRAAVEEGIVPGGGVALLRARRVLQALASPNLDQASGVKIVLRALEEP
                     LRRIVSNAADEASVVLHKVDESAQRSYGYNAATREYGDLLEMGVIDPAKVTRLALQNA
                     ASIASLVLTIDCMVANAPKKPSEADAQPGASPEMY"
     gene            1820..>2154
                     /locus_tag="VF308_07180"
     CDS             1820..>2154
                     /locus_tag="VF308_07180"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HEX7436470.1"
                     /translation="MDLPTQTHLTTLRDLLTYRLHELRAEIHATEQAQREPADAATHD
                     VVDRKDEAAQRQRSDLDDAQEQRDIDEVAQVEAALHRLDAGTYGDCADCGEPISLQRL
                     LVQPAALRCA"
BASE COUNT          314 a          738 c          723 g          379 t
ORIGIN      
        1 gtggtgctca gtacatctcc gggctggcgc cgggctgtgc atccgcctcg gacggcttct
       61 tcggagcgtt cgccaccatg caatcgatgg tcagcaccag gctcgcgatc gaggcggcgt
      121 tctggagcgc gagccgcgtc accttggccg ggtcgatgac acccatttcg agcaggtcgc
      181 cgtactcgcg cgtcgcggcg ttgtagccgt agctgcgctg tgccgattcg tcgaccttgt
      241 ggagcacgac cgaggcctcg tcggccgcgt tgctgacgat gcggcgcagc ggctcttcca
      301 gtgcgcgcag cacgatcttg acgcccgaag cctggtccag gttcggcgag gccagggcct
      361 gcagcacccg gcgtgcgcgc agcagcgcca cgccgccgcc cgggacgatg ccttcctcga
      421 ccgcggcgcg ggtcgcatgc agggcgtcct cgacgcgcag cttgcgctcc ttgagctcgg
      481 tttcggtggc ggcgccgacc ttgatcagcg ccacgccgcc ggacagtttg gcgatgcgtt
      541 cgtcgagatg cttgcgctcg tagtcgctgg tctgggcgtc gcggtccttc ctgatcgcgg
      601 cgatgcgctc ggcaatggcc ttcgcgtcgc cggcgccgcc gatgatggtc gtgctgtcct
      661 tgtcgacctc gacccggcgc gcgcggccga ggtgctcgag cgtcgctttg gcgagcgtca
      721 gtccgaggtc gctcgcgatc acggtgccgc cggtcagcac ggccatgtcc tggagcatgg
      781 ccttgcgacg gtcgccgaaa cccggtgcct tcaccgcgca ggtcttgacg acgccgcgca
      841 cgctgttgat caccagcgtg gcgagcgcat cggcgtcgac ctcttcggcg atcaccagca
      901 gcggcgcgcc cgacttcgcg gcggcctcca gcaacggcac caggtccgtg acggtggaca
      961 gcttctggtc gcacagcacg atggccgcgt tctcgagcac cgcggcctgc ttctcggcgt
     1021 tgttgatgaa atagggcgac aggtagccgc gatcgaactg caggccttcg acgacctcga
     1081 gttcgctgac catgcccgaa ccatcctcga tcgagatcgc gccttcgcgg ccgaccttgt
     1141 ccatcgcgcg ggcgacgaga tcgccgatcg agcggtcgtt gttggccgag atcgccgcca
     1201 cgtgcgcgat ctcctgcgaa gcggtgcagg gttgggcgat cgttttcaat tcctgcacga
     1261 ccgactcgac agcgcggtcg atgccgcgct tcaggtccat cgggttcatg ccggccgcga
     1321 ggaacttcag gccctcgccg atcatcgcgt gggccagcac gatggcggtc gtggtgccgt
     1381 cgcccgccat ctcgctggtg cgcgccgcca cttcgcgcag cagttgcgcg cccatgttct
     1441 cgaagcggtc ctcgagctcg atcgccttgg cgacgacgac gccggagttg acgatctgcg
     1501 gcggaccgaa ctcgcgatcg aggagcacgg tgcgcccgcg cggcccgagc gtgaccatga
     1561 cggcttccgc gagggtgtcg acgccgcgcc ggatcctgtt gcgcgcatcc tcgcggtaga
     1621 gaacttgctt ggcgctcatg tgcgtgcctt ttcagggacc aagcatcaat ctaggcgtct
     1681 gccggcccca agccttgcga tagatcatgc cgccgagcct tcgcgagcga ttgatgctcg
     1741 tcaagcaccc gcgccggccg ggattccaga atcgatcatg gactgctcat cagccgatgc
     1801 ccaaccggac ggatcgatca tggatctccc cacccaaacc cacctgacga cattgcgcga
     1861 tctgctgacc taccgtttgc acgaactgcg cgccgagatt cacgcgaccg agcaggctca
     1921 gcgggagccg gccgacgctg cgacgcacga tgtggtagac cgcaaggacg aggccgcgca
     1981 gcggcagcgt tcggacctcg atgatgcgca ggagcagcgc gatatcgacg aggtggccca
     2041 ggtggaagcc gccttgcatc ggctcgacgc cgggacctac ggcgactgcg cggattgcgg
     2101 ggaaccgatt tccctgcagc gcctgctggt gcaacccgcg gcgctgcgct gcgc
//
LOCUS       DASVHM010000380         2399 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_314584, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000380 DASVHM010000000
VERSION     DASVHM010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314584"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..772
                     /locus_tag="VF308_07185"
     CDS             <1..772
                     /locus_tag="VF308_07185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7436471.1"
                     /translation="GAKALINRGGAVRFENVRFGYDPDRTILHGVSFEIPAGRTVAVV
                     GPSGSGKSTLARLLFRFYDVNAGSISIDGQDIRSVTQKSLRESIGIVPQDTVLFNDTV
                     EYNIAYGRTGASRGEVEGAAKAAHIHAFIASTPKAYDTMVGERGLKLSGGEKQRVAIA
                     RTLLKNPPVLIFDEATSALDSANERAIQAELQSAARNKTALVIAHRLSTVVDAHQILV
                     MEGGRILERGTHAELLALNGRYAEMWRLQQSSAEEAVA"
     gene            complement(780..2030)
                     /locus_tag="VF308_07190"
     CDS             complement(780..2030)
                     /locus_tag="VF308_07190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008158377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HEX7436472.1"
                     /translation="MQTTHDDSAPPPRPRPLSGLTVIDVTRVVAGPYCAMMLADLGAT
                     VIKVEHPSDPDYVRDFPPRLGATDAGAAAGGSGYFAQYNRHKLGVSLDLKHADGKALF
                     IDMVRKADVVIENFRPGTMDKLGLGYEALRRANPRLIYTAISGFGQTGPNSRRPSFDS
                     TAQAAGGLWSMNGRPGEPPVRVGSVLGDLGASFYATIGTLAALREVERSGLGQLVDIS
                     QQDSVVTLTESAIVNYTVAGLVARPLGNEHPFARPYGQYPCKDGHVFFGSYSDKLWRD
                     SCVIFGEPELADDPEIDTMNKRFDERTYQRRVKPVIERWFADRTKAELEAMAGDRIAL
                     TPIKTIDEVVADPHLRARDMFVKVPCAGVSVEVFGSPIKLSATPPLAVGPVPGLGEHN
                     REVYLDWLGLPAERYEALRAGGVI"
     gene            complement(2066..>2399)
                     /locus_tag="VF308_07195"
     CDS             complement(2066..>2399)
                     /locus_tag="VF308_07195"
                     /inference="COORDINATES: protein motif:HMM:NF013488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEX7436473.1"
                     /translation="AARAFCWVKRHHRGREASFAGAVYDRYWRLGRDLSQAEELKAVA
                     PIVGIEAEALAAGVQSEESRTDLRDAVAAALERGVFGSPFIIVDGEPFWGSDRLELVD
                     EWLTRGGW"
BASE COUNT          388 a          810 c          842 g          359 t
ORIGIN      
        1 gggcgcgaag gcgttgatca accgcggcgg cgcggtgcgc ttcgagaacg tgcgcttcgg
       61 ctacgacccg gaccgcacga tcctgcacgg cgtcagcttc gagataccgg ccggccggac
      121 ggtggcggtc gtcggcccat cgggttcggg caagagcacg ctggcgcgtc ttctgttccg
      181 cttctacgac gtgaacgccg gcagcatctc gatcgacggc caggacatcc gcagcgtcac
      241 ccagaaaagc ctgcgcgagt cgatcggcat cgtgccgcag gacacggttc tcttcaacga
      301 caccgtcgaa tacaacatcg cctacggccg caccggcgcc agtcgcggcg aggtcgaagg
      361 cgccgcgaag gcggcgcaca tccacgcctt catcgcgtcg acgccgaagg cctacgacac
      421 gatggtcggc gagcgcgggt tgaagctctc cggcggcgag aagcagcgcg tcgcgatcgc
      481 acgcacgctg ctgaagaatc cgccggtgct gatcttcgac gaggcgacgt cggcgctcga
      541 ttcggcgaac gaacgcgcga tccaggccga actgcagagc gccgcgcgca acaagacggc
      601 gctcgtgatc gcgcaccggc tctccacggt ggtcgacgcg caccagatcc tcgtgatgga
      661 aggcggccgc atcctcgagc gcggcaccca tgcggagctg ctcgcgctga acgggcgcta
      721 tgccgagatg tggcgcctgc agcaaagcag cgccgaagag gcggttgcgt gaacaagccc
      781 tagatgacgc cgccggcgcg gagcgcttcg tagcgctccg ccggcaggcc cagccaatcg
      841 aggtagacct cgcggttgtg ctcgccgagc ccgggcacgg gcccgacggc gagcggcggt
      901 gtggcggaca gcttgatggg cgacccgaag acctcgacgg aaacgcccgc gcacgggacc
      961 ttgacgaaca tgtcgcgcgc gcgcaggtgc ggatcggcaa ccacctcgtc gatcgtcttg
     1021 atcggcgtca gggcgatccg gtcgccggcc atcgcctcga gttcggcctt ggtgcgatcc
     1081 gcgaaccagc gctcgatgac cggcttaacg cggcgctggt acgtgcgctc gtcgaagcgc
     1141 ttgttcatcg tgtcgatctc ggggtcgtcc gcgagctcgg gttcgccgaa gatcacgcac
     1201 gagtcgcgcc acagcttgtc gctgtacgag ccgaaaaaga cgtggccgtc cttgcagggg
     1261 tattgcccgt agggccgggc gaacgggtgt tcgttgccga gcggtcgggc gacgaggccg
     1321 gccacggtgt agttgacgat cgcgctctcg gtcagggtca cgaccgaatc ctgctgcgag
     1381 atatcgacca gctggccgag gccgctgcgt tcgacttcgc gcagcgcggc gagcgtgccg
     1441 atcgtggcgt agaaagatgc cccgagatcg ccgagcacgc tgccgacgcg aaccggcggc
     1501 tcgccgggcc tgccgttcat cgaccacagt ccgccggcgg cctgtgcggt gctgtcaaag
     1561 gacggtcgac gcgaattcgg gccggtctgg ccgaagccgc tgatggcggt gtagatcagg
     1621 cgcgggttcg cgcgccgaag cgcctcgtag ccgagcccga gcttgtccat cgttcccggc
     1681 cggaagttct cgatcacgac atcggccttg cgcaccatgt cgatgaacag cgccttgccg
     1741 tcggcgtgct tcaggtcgag gctgacgccg agcttgtggc ggttgtactg ggcgaaatag
     1801 ccgctcccgc cggccgctgc gccagcgtcc gtcgcgccca ggcgcggcgg aaagtcgcgc
     1861 acgtaatccg gatcgctcgg gtgctcgacc ttgatcacgg tggcgcccag gtcggcgagc
     1921 atcatcgcgc aatacggacc cgcgacgacg cgcgtcacgt cgatgacggt caggccgctc
     1981 agcgggcgcg ggcgcggggg cggcgccgaa tcgtcgtgcg tcgtctgcat ctggttctcc
     2041 ttgcgaaggc agccgctgcg tgcgctcacc agccaccgcg ggtgagccac tcgtcgacga
     2101 gttcgaggcg gtcggagccc cagaagggct cgccgtcgac gatgatgaac ggcgacccga
     2161 agacgccgcg ttcgagcgcc gcagcgaccg cgtcgcgcag atccgtgcgt gactcctcgc
     2221 tctggacgcc ggccgcgagc gcctccgcct cgatgccgac aatcggcgca acggccttga
     2281 gttcctcggc ttgcgacagg tcgcgaccaa gacgccagta gcggtcgtag acggcgcccg
     2341 cgaacgacgc ttcgcgcccc cggtggtggc gcttgaccca gcagaaggcg cgcgccgca
//
LOCUS       DASVHM010000381         2739 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_314712, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000381 DASVHM010000000
VERSION     DASVHM010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2739
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314712"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            152..346
                     /locus_tag="VF308_07200"
     CDS             152..346
                     /locus_tag="VF308_07200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013594685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436474.1"
                     /translation="MAKPNYSFEKRQRELAKKKKKEEKEREKAGRKAGTVTGAEGSAE
                     AGPGESAGETSQPAAAEPAR"
     gene            complement(376..2166)
                     /gene="mnmC"
                     /locus_tag="VF308_07205"
     CDS             complement(376..2166)
                     /gene="mnmC"
                     /locus_tag="VF308_07205"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: protein motif:HMM:TIGR03197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEX7436475.1"
                     /translation="MILEAGSDRVDAFVATWQAWRDDLQRCARLHFIALGSLRPAAFD
                     AIPAGTRGGELARQLAEAWPPLTKNLHRLSFEAGRVQLLLAPGEPGAWLREIVASVDA
                     FLVAGANGERADRLERLPSFAKAMARIAAPAATLAARRIDPAAADALEAAGFRIDPSG
                     VGAAALGTATARYEPRFVPRQNDVRRSRATTTHRHALIVGAGLAGCAAAWALAEQGWR
                     STVLERHAAIAREASGNPAGIFHGIVNGQDGTHARFNRAAALEAHAAATVALAQHAVK
                     GGLDGLLQLADASVSVAAMRALLQRLGLPDGYVRAFDADHASARAGLELQRPAWFYPG
                     GGWISPAGLARSFLERAAPSVELRLGMAVTELRREGSAWELRDAAGQLIEMAETVVLA
                     NAGEALRLLGGAWPVEAVRGQLSFVRVADAPALRLPRLPISGDGYLLPEVEGLALFGA
                     TADRDDDDPAVRMRDHVRNLSQLGRLAPASGVATHVDAERLQGRTAWRWVSRDRLPLI
                     GPVPRGCGAIPVNACDGSARFDQLRFVPRESGLFVFTALGSRGIAWAALGAQALASSI
                     TGAPTPVEASLVDALDPARFRVREGRRRAA"
     gene            complement(2239..>2739)
                     /locus_tag="VF308_07210"
     CDS             complement(2239..>2739)
                     /locus_tag="VF308_07210"
                     /inference="COORDINATES: protein motif:HMM:NF023354.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-dependent oxidative N-demethylase subunit
                     alpha family protein"
                     /protein_id="HEX7436476.1"
                     /translation="PWLAVCLPSNWAPEDKLGRRFAQVHAPVADNESLVAAADHLVRL
                     ITGGERWERFVWTLNDDARLHRHPRRAPPVCWDPDCAPEALAATAYFRTERQTFLPIP
                     ESRQALFTIHVEVKPLAAAITSRAEAERLHAALSSMSPAVLAYRGLDAPRDRLLAWLE
                     TFAASA"
BASE COUNT          459 a          930 c         1007 g          343 t
ORIGIN      
        1 atcttcgcgc gcaaccgggc gagcctgtgt ctgctcggca cgccgacggg cgtgaggacg
       61 ctgagtttct gagtgcgtcc ggcactttgg cgctcaaaaa cgcgtaacct cggcactgct
      121 caatttctgc agctcaccgg aaggacggcc cgtggccaaa ccaaactatt cgttcgaaaa
      181 gcggcagcgc gaactggcga agaagaagaa gaaggaagaa aaggaaaggg agaaggccgg
      241 ccgcaaggca ggcactgtga ccggcgccga aggcagcgcc gaagcgggtc ctggcgagag
      301 tgccggggaa acgagccaac cggcagccgc ggagccggcc cgctgatctg acaccgggcg
      361 ccggactcgc gttcatcacg cagctctccg gcgcccctcg cgcacccgga aacgcgccgg
      421 atccagcgca tcgacaagac tcgcttcgac cggcgtcggg gcgccggtga tcgacgaagc
      481 gagagcctga gcaccgagcg cggcccaggc gatgccgcgc gagccgagcg cggtgaacac
      541 gaacagaccg gactcgcgcg gcacgaatcg cagctggtcg aaacgcgccg acccatcgca
      601 agcgttcacc gggatggcac cgcacccacg cggcaccggg ccgatcagcg gcaggcggtc
      661 gcggctgacc cagcgccacg cagtcctgcc ttgcaggcgc tcggcgtcga cgtgggtcgc
      721 gacgccgctc gcgggcgcaa gccggccgag ttgcgagagg tttcgcacgt ggtcacgcat
      781 gcgcacggcg gggtcgtcgt cgtcgcggtc tgccgtcgcg ccgaagaggg cgaggccctc
      841 gacttcgggt aacagatacc cgtctccgct gatcggcagg cgcggcaggc gcagggccgg
      901 cgcatcggcc acgcgcacga aactgagctg cccgcgcacc gcctcgacgg gccaagcgcc
      961 gccgaggagg cgcaaggctt ctccggcgtt cgccagcacc acggtctcgg ccatttcgat
     1021 gagctgccct gcggcgtcgc gcaattccca tgcgctgccc tcgcgccgca gttcggtcac
     1081 ggccatgccg agccgaagct cgaccgatgg cgcggcacgt tcgaggaacg agcgcgcgag
     1141 gccggcggga gaaatccatc cgccgcccgg gtagaaccag gccgggcgct gcagctcgag
     1201 gccggcgcgt gcgctggcat ggtcggcgtc gaaggcccgg acgtagccat cgggcaggcc
     1261 gaggcgctgg aggagggcgc gcatcgccgc gaccgagacg gacgcgtcgg cgagctgcag
     1321 gaggccatcg aggccgccct tcaccgcgtg ctgcgcgagc gccaccgtcg cggcggcgtg
     1381 cgcttcgagt gcagcagcgc ggttgaagcg tgcgtgagtg ccgtcctggc cgttgacgat
     1441 gccgtggaag attccggccg ggttgccgga cgcctcgcgc gcgatcgccg catggcgctc
     1501 gagcacggtg ctgcgccagc cctgttcggc cagggcccag gctgcggcgc aaccggcgag
     1561 ccccgcgccg acgatgagcg cgtgccgatg cgtcgtcgtg gcgcgagagc ggcgcacatc
     1621 gttttgacgc ggcacgaaac gcggctcgta acgcgccgtg gcggtgccga gcgcggccgc
     1681 gccgacgccc gaaggatcga tccgaaagcc ggcggcctcg agcgcatcgg cggccgcggg
     1741 gtcgatccgt cgcgcggcaa gggttgcggc gggcgcggcg atgcgcgcca tggccttggc
     1801 aaaactgggc aatcgttcca gcctgtcggc cctctcgccg ttggcgccgg cgacgagaaa
     1861 ggcatcgacg ctggcgacga tttcacgcaa ccacgcgccg ggttcgccag gcgcgagcag
     1921 caactggacc cggccggctt cgaaagacag gcggtgaagg tttttcgtga gcggcggcca
     1981 ggcctccgcc agttgccggg cgagctcgcc gccgcgtgtt ccggccggaa ttgcatcgaa
     2041 cgcggcgggc cgaagcgagc cgagcgcgat gaagtgaagg cgcgcgcagc gctgcaggtc
     2101 gtcgcgccag gcctgccagg tcgcgacgaa agcgtctacc cgatcggagc cggcctcgag
     2161 aatcacgaac cgttcgcgcc cgcgccatcg cgccggcaac ccgctcgcgc gcaacaaggc
     2221 ggtcgcggta tccgtcattc aagccgaagc cgcgaaggtc tcgagccagg ccagcagacg
     2281 atcgcgcggg gcgtccaggc cccgatacgc cagcactgca gggctcatac tggagagggc
     2341 cgcatgcagc cgctcggcct cggcccgcga tgtgatggcg gcggccagcg gtttcacctc
     2401 gacatggatc gtgaagagtg cctggcgcga ctcggggatg ggcagaaagg tctggcgctc
     2461 ggtgcggaag tacgcggtcg cggcgagcgc ttcaggcgcg caatcggggt cccagcacac
     2521 cggcggggcc cgacgtggat ggcgatgcaa acgcgcatcg tcgttcaggg tccagacgaa
     2581 gcgttcccaa cgttcgccgc cggtgatgag ccggaccaga tggtccgccg ccgcgaccag
     2641 gctttcgttg tcggcgaccg gcgcatggac ctgcgcgaag cgtcggccga gcttgtcctc
     2701 gggtgcccaa ttcgacggca ggcagacggc gagccaggg
//
LOCUS       DASVHM010000382         2560 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_749619, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000382 DASVHM010000000
VERSION     DASVHM010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2560
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_749619"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            353..937
                     /locus_tag="VF308_07215"
     CDS             353..937
                     /locus_tag="VF308_07215"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEX7436477.1"
                     /translation="MLLMIDNYDSFTYNLVQYFGELGEEVRVFRNDEITLEGIGALRP
                     DRLVLSPGPCSPAEAGICVDAIKAFTGRLPILGVCLGHQAIGAALGGHVVRARTLMHG
                     KTSLISTDGRGVYRTLPKEFTVIRYHSLAIERDTLPESLDITATSEDGEIMGVRHRAL
                     AATATPLEGVQFHPESILTEHGHAMLKNFLETAG"
     gene            934..1956
                     /gene="ltaE"
                     /locus_tag="VF308_07220"
     CDS             934..1956
                     /gene="ltaE"
                     /locus_tag="VF308_07220"
                     /EC_number="4.1.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013539098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low-specificity L-threonine aldolase"
                     /protein_id="HEX7436478.1"
                     /translation="MKTVDLRSDTVTRPTPAMRAAMAAAEVGDDVFGDDPTVNALQER
                     IAALLGKEAALFVPSGTQSNLVAIMSHCGRGDEYIVGQMAHTYRWEGGGAAVLGSVQP
                     QPLEHQADGTLALAAIEAAIKPDDSHFARSRLLCLENTLGGKVLPMAYIAEATALARG
                     RDLATHLDGARLFNAAVALGGNPKANAREIAAHFDSVSVCFSKGLGAPVGSALAGSRR
                     FIHAAHRWRKMLGGGMRQAGVLAAAALHALEHHVERLAEDHALARRLAEGLRGVAGLT
                     VEAPQTNIVFADLRGERAAGLMEHLKSRGVLATGLYRLRFVTHLDVDAGGIDRTVAAV
                     REHLAA"
     gene            1976..>2560
                     /gene="trpD"
                     /locus_tag="VF308_07225"
     CDS             1976..>2560
                     /gene="trpD"
                     /locus_tag="VF308_07225"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEX7436479.1"
                     /translation="MPITNLDALARTIDHREIFHDEMLALVRRIMSGEMSPVMMAAVL
                     VGLRVKKETIGEITAAAQVMREFATKVEVPDRTHLVDIVGTGGDGSHTFNISTCSMFV
                     AAACGARVSKHGNRSVSSKSGSADVLEALGVPLTLTPKAIAQSIADTGIGFMFAPNHH
                     PAMKNVGAVRKELGVRTIFNILGPLTNPADAPNIL"
BASE COUNT          437 a          877 c          852 g          394 t
ORIGIN      
        1 atggccttgc ggtgcaggct caacaccagg ccggccgggc tgtgaggcat cgcgttgccc
       61 ggtgtgactt ggctgagcgg gtggcgtgcg gcggggtccg ttctcatccg ggtcaatgcc
      121 gacgataatg ccgagcatgc tcgctacgac ttcatcctca gcggcgctac ttcggcagcg
      181 ttggcgcaag ccatcagcct gaccgaccta ttgcgcccgc gcgggcgctc cagactcccc
      241 acccagcacg tcgcgccggc ctcgccagcg acagaaaaag cgggtatcaa agcgggtatc
      301 gaaactgggt ggcacagcca gtacccaatg aaattaatag gatagagcgc aaatgctgct
      361 catgatcgac aactacgaca gcttcaccta caacctggtg cagtatttcg gcgagctcgg
      421 cgaagaggtg cgcgtgttcc gcaacgacga gatcacgctc gaaggcatcg gcgcgttgcg
      481 gccggatcgg ctggtgctgt cgccgggccc ctgctcgccg gccgaagccg ggatttgcgt
      541 cgatgcgatc aaggccttca ccggacggtt gccgatcctc ggtgtctgcc tcgggcacca
      601 ggcgatcggc gccgcgctcg gtggccatgt ggtccgggcg cgcacgctga tgcacggcaa
      661 gacgagcctc atcagcacgg atggacgcgg cgtgtaccgc acgctgccga aggagttcac
      721 cgtgatccgc tatcactcgc tcgcgatcga acgcgatacc ttgccggaat cgctcgacat
      781 caccgccacc tccgaagacg gcgagatcat gggcgtgcgc caccgcgctc tggcggccac
      841 ggccacgccg ctcgaaggcg tgcagttcca tccggagtcg atcctgaccg agcacggtca
      901 tgcgatgctg aagaatttcc tggagacagc cggatgaaga ccgtcgatct gcgcagcgat
      961 accgtgaccc ggccgacgcc cgcgatgcgc gccgcgatgg cggcggccga ggtcggcgac
     1021 gacgtgttcg gcgacgatcc gaccgtcaac gcgttgcagg aacggatcgc ggcgctgctc
     1081 ggcaaggaag ccgcgctctt cgtgccgagc gggacgcaga gcaatctcgt cgccatcatg
     1141 agccactgcg gccgcggcga cgagtacatc gtcggccaga tggcgcacac ctaccgctgg
     1201 gaaggcggcg gcgccgcggt gctcggcagc gtgcagccgc agccgctcga gcaccaggcc
     1261 gacggcacgc tcgcgctggc cgcgatcgag gcggcgatca agcccgacga ctcgcacttc
     1321 gcccgcagcc gtctgctctg cctcgagaac acgctcggcg gcaaagtgct gccgatggcc
     1381 tacatcgccg aggccaccgc gctcgcgcgg gggcgagacc tcgccacgca tctggacggc
     1441 gcccggctct tcaacgccgc ggttgcgctc ggtggcaatc cgaaggcgaa tgcgcgcgag
     1501 atcgccgcgc atttcgacag cgtctcggtg tgcttctcga aaggcctcgg ggcgccggtg
     1561 ggctcggccc tggccggctc gcgccggttc attcatgccg cccaccgctg gcgcaagatg
     1621 ctcggcggcg gcatgcgcca ggccggcgtg cttgccgcgg ccgcgctgca tgcgctcgag
     1681 catcatgtcg agcgtctggc cgaagaccat gcgctcgcac ggcgcctcgc cgaaggcctg
     1741 cggggcgtag ccgggctcac ggtcgaggcg ccgcagacca acatcgtctt cgccgacctg
     1801 cgcggcgagc gcgccgccgg cttgatggag cacctgaagt cgcgcggcgt gctggcgacg
     1861 ggcctctatc gtctgcgctt cgtcacccac ctcgatgtcg atgccggcgg catcgatcgg
     1921 acggtggccg cggtgcgcga acacctggct gcctgaactg cgaacggaga cttcgatgcc
     1981 gatcaccaac ctcgacgcgc tggcccgaac catcgaccac cgcgaaatct tccacgacga
     2041 gatgctcgcc ctggtgcgcc gcatcatgag cggcgagatg tcgccggtga tgatggcggc
     2101 ggtgctcgtc ggcctgcggg tgaagaagga aaccatcggc gagatcaccg ccgcagcaca
     2161 ggtgatgcgc gagttcgcga ccaaggtcga ggtccccgat cgcacgcacc tggtcgacat
     2221 cgtcggcacc ggcggcgacg gctcgcacac cttcaacatc tcgacctgca gcatgttcgt
     2281 cgccgccgcc tgcggggcgc gcgtcagcaa gcatggcaat cgcagcgtct cgagcaaatc
     2341 gggcagcgcc gacgtgctcg aagcgctcgg cgtgccgctc acgctcacgc cgaaagcgat
     2401 tgcgcaatcg atcgccgata ccggcatcgg cttcatgttc gcgccgaacc atcatccggc
     2461 gatgaagaat gtcggggcgg tgcgcaagga actcggcgtg cgcacgatct tcaacatcct
     2521 ggggccgctc accaatccgg ccgatgcgcc gaacatcctg
//
LOCUS       DASVHM010000383         6000 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_605824, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000383 DASVHM010000000
VERSION     DASVHM010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6000
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_605824"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..187)
                     /locus_tag="VF308_07230"
     CDS             complement(<1..187)
                     /locus_tag="VF308_07230"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX7436480.1"
                     /translation="MPCVLIPVDGSDNSTRAVEVACRQLANRQPVTLHLLNVQPPNHS
                     GVVKKYLNQDLIDKFHQE"
     gene            complement(334..2628)
                     /locus_tag="VF308_07235"
     CDS             complement(334..2628)
                     /locus_tag="VF308_07235"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-translocating pyrophosphatase"
                     /protein_id="HEX7436481.1"
                     /translation="MSTPMALYFALACGLAAVVYGFFQRSWILSQDAGNARMQEIASA
                     IQQGAAAYLARQYKTIGLVGVILAVLIGVFLDGTTAVGFVLGALLSGACGFIGMNVSV
                     RANVRTAQAATRGIGPALNVAFKGGAITGMLVVGLGLLGVGTFFMFVTGNGNVTPDRS
                     LATILKPMLGFAFGASLISIFARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVI
                     ADNVGDNVGDCAGMAADLFETYAVTLIATMALAALTFTNGTATQMAAVIYPLVLGGFS
                     IIASIIGCSMVKASPGMKNVMPALYRGLAVAGVISLIGFFFITRAILPDDALGAGTQI
                     RLFGACVVGLVLTAALVWITEYYTGTNFKPVQHVAQASTTGHGTNVIAGLGVSMRSTA
                     WPVLCVCVAIVVSFKLGGLYGIAIAATSMLSMAGIIVALDAYGPITDNAGGIAEMADL
                     PESVRAVTDPLDAVGNTTKAVTKGYAIGSAGLAALVLFADYTHALGARGLSVSFDLSN
                     HMVIVGLFIGGLIPYLFGAMAMEAVGRAAGAVVVEVRRQFRDIKGIMEGTGKPEYGKA
                     VDMLTTAAIKEMVVPSLLPVVVPILVGLLLGPAALGGLLMGTIVTGLFVAISMCTGGG
                     AWDNAKKYIEDGHHGGKGSEAHKAAVTGDTVGDPYKDTAGPAINPLIKIINIVALLIV
                     PLLPIAAATGVTAVHMTAPAVVGVATPAPSMTATPAPSTTASAVTATPTLSTMPGSSP
                     SAALRSPATVSASAPMEAPASAPK"
     gene            2796..3338
                     /gene="ppa"
                     /locus_tag="VF308_07240"
     CDS             2796..3338
                     /gene="ppa"
                     /locus_tag="VF308_07240"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016833510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEX7436482.1"
                     /translation="MSLHNVTPGARAPDEFNVIIEIPMNADPIKYEVDKQSGALFVDR
                     FMSTAMHYPCNYGYVPQTLSDDGDPVDVLVITPFPLHSGVVVTCRPIGVLKMQDEAGG
                     DAKLLAVPIDKILSIYHHWQKPQDMNELRLRQIQHFFEHYKDLEPGKWVKVEAWEGPE
                     SAREEIRQGILSYRDSEQKK"
     gene            3346..>6000
                     /locus_tag="VF308_07245"
     CDS             3346..>6000
                     /locus_tag="VF308_07245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEX7436483.1"
                     /translation="MLKSLGRLVLFVLVVGAAAPVLAQRLPQGVVAVTAVEGVDEYRL
                     ANGLQILLIPDDSKPTTTVNLTYRVGSRYENYGETGMAHLLEHLLFKGTPTHRTVWAE
                     FEKRGLAANGSTSFDRTNYTAHFSANADNLQWYLGWLADAMVNSFIARKDLDTEMTVV
                     RNEMERGENEPDGVLLRETMAAMFDWHNYGKSTIGARSDVENVDIPRLQAFYRLYYQP
                     DNATLIVSGKFDVAAVLNRISGSFGKIPRPTRKLAFHYTLDPAQDGERSVTVRRNGGA
                     PLMIAAYHVPAASAPDFAAVEVLALVLGDTPSGRLHKGLTEQQLAASTFAFAYDLAEP
                     SVFVTGAQLAPGQDVDKARTALLAVDESVLREPITAEELARAKAKWAKNWEQSFTNPE
                     TVGIALSESVAQGDWRLFFLTRDRVRDVALADVQRVAGQYLLPSNRTLGTYLPADAPL
                     RAPAPIRVDLAQSMKDFKPQAAAAKVEAFDATPANLDARTQTFAVGGVKAALLPKGTR
                     GGAVRATLTLRFGDEKSLFGLGEVPDSVAALLDKGTRTLTREQIQDRLDQLKTELSIS
                     STPGRVTLSLATRREHLPAAIALVGDLLRNPVFPEAALLELKQQSITEIEQQRREPNA
                     LAENTLGRWGNPYPRGDVRYVSTFDETVEDVRAVTLDKLREFHARFYGAGAGEFAAVG
                     DLDPAAVRTALQAAFAGWERGAAFTRVPRPLVAVKPDRLLLDTPDKQNATLLVRESFP
                     VSDSDPDYPALMMANFLLGGGGNSRLWKRIREGEGLSYDVRTGIVWSNFEANSPWQAS
                     AIYAPPVRARVEAAFREEIARALKDGFTAQELSEGQRGLLNFRRLSRAQDASLSAALA
                     NNLYLDRTFAFAAKIDAALSALTPAQVNS"
BASE COUNT         1058 a         1962 c         2021 g          959 t
ORIGIN      
        1 cttcctggtg gaatttgtca atcaggtcct gattgaggta cttcttgacc acccccgaat
       61 ggttgggcgg ctgcacgttc agcaaatgca acgtcacagg ctgccggttg gcaagttgcc
      121 ggcaggccac ctccaccgcg cgcgtcgaat tgtcagaacc atcgaccgga atcaacacgc
      181 agggcatgac gatctccttg tgcggtctga tcaagtccaa tcaataatga atgtcaccga
      241 gcacgtgggc cgcttcgcgg gcatgaagag cctgtcttgt gcagacccga gccaacgggc
      301 tgtcgctaag gcaccatgcc gtcgctctct tttttacttc ggtgcgctgg ccggcgcttc
      361 catcggcgcg ctggcgctga ccgtcgccgg gcttcgcagg gcggccgaag gcgaggaacc
      421 cggcatggtc gacagcgtcg gcgttgcggt caccgcggaa gcggtcgtcg aaggggcggg
      481 agttgccgtc atgctcggcg caggggtcgc cacaccgact actgccggcg cagtcatgtg
      541 caccgccgtc acgccggtgg ccgccgcgat cggcagcagc ggcacgatta ggagcgcgac
      601 gatgttgatg atcttgatca gcgggttgat cgccggaccc gcggtgtcct tgtagggatc
      661 gccgacggtg tcgccggtca cggccgcctt gtgcgcttcg ctgcccttgc cgccatgatg
      721 gccgtcctcg atgtatttct tcgcgttgtc ccaggcgccg ccgccggtgc acattgagat
      781 cgcgacgaag aggccggtga cgatggtgcc catcagcagg ccgccgagcg cggccggtcc
      841 gagcagcagc ccgaccagga tcggcacgac caccggcagc aggctcggca cgaccatttc
      901 cttgatcgcg gcggtggtca gcatgtcgac ggccttgccg tactcgggct tgccggtgcc
      961 ttccatgatg cccttgatgt cgcggaactg gcgtcgcact tcgacgacca cggcgcccgc
     1021 agcgcgcccg accgcttcca tcgccatcgc gccaaagagg tagggaatca gcccgccgat
     1081 gaagaggccg acgatgacca tgtggttcga caggtcgaag ctgaccgaaa gcccgcgcgc
     1141 accgagcgca tgggtgtagt cggcgaacag caccagcgcg gccagaccgg ccgagccgat
     1201 ggcgtagccc ttggtgacgg ccttggtcgt gttgccgacc gcgtcgagcg ggtcggtcac
     1261 ggcgcgcacg ctctcgggca gatcggccat ctcggcgatg ccgccggcgt tgtcggtgat
     1321 cggaccgtag gcgtcgagcg cgacgatgat gccggccata ctgagcatcg aggtggcggc
     1381 aatcgcgatg ccatagagac cgccgagctt gaacgagacc acgatcgcga cgcagacgca
     1441 cagcaccggc caggcggtgg atcgcatcga gacgccgagg ccggcgatga cgttggtgcc
     1501 atgccccgtc gtcgaggcct gcgcgacgtg ctggaccggc ttgaaattgg tgccggtgta
     1561 gtactcggtg atccagacca gcgccgccgt cagcaccagg ccgaccacgc aggcgccgaa
     1621 gagtcgaatc tgcgtgcccg cgccgagcgc gtcgtcgggc aggatggcgc gggtgatgaa
     1681 gaagaagccg atgagcgaga tcacgcccgc gacggcgagg cccctgtaga gcgcgggcat
     1741 cacgttcttc atgcccggcg aggccttgac catgctgcag ccgatgatcg aggcgatgat
     1801 cgaaaagccg ccgagcacga gcgggtagat caccgcggcc atctgggtcg cggtgccgtt
     1861 cgtgaaggtc agcgcggcga gggccatggt cgcgatcagc gtgacggcgt aagtctcgaa
     1921 caggtcggcg gccatgccgg cgcagtcgcc gacgttgtcg ccgacgttgt cggcgatcac
     1981 cgccggattg cgcgggtcgt cttcggggat gcccgcttcg accttgccga cgaggtcggc
     2041 gccgacgtcg gcgcctttcg tgaagatgcc gccgcccagc cgcgcgaaga tcgagatcag
     2101 cgaggcgccg aaggcgaagc cgagcatggg ttttaggatc gtggcgagcg atcggtccgg
     2161 cgtgacgttg ccgttgccgg tgacgaacat gaagaaggtg ccgacaccga gcaggccgag
     2221 cccgacgacg agcatgccgg tgatcgcgcc gcccttgaag gcgacgttta gggccggccc
     2281 gatcccgcgc gtcgctgcct gcgcggtgcg tacgttggcg cgcacagaga cgttcatgcc
     2341 gatgaagccg catgcgcccg agagcagcgc tccgaggacg aagccgaccg ccgtcgtgcc
     2401 gtcgaggaag acgccgatca gcacggcgag gatgacgccc accagtccga tcgtcttgta
     2461 ctgtcgcgcg aggtaagccg ccgcgccttg ctggatggcg cttgcgatct cctgcatgcg
     2521 cgcgttgccg gcatcctggc tgagaatcca gcttcgttgg aagaagccgt agaccacggc
     2581 ggcaaggccg caggccaggg cgaaatagag cgccatcggt gtcgacatcg gaatcgttcc
     2641 ttgggtgttc ggtggtttcg ggcgttgaaa aaaacggggc tcgccatgcc cgcgagtccg
     2701 gcaagccaaa cccgcagatg ctaagggaaa tcggcagacc gacggaccac gccgcgtaaa
     2761 atgcgggttt ccccgcgcac gacagagacg ccgccatgag cctgcacaac gtgaccccgg
     2821 gcgcgcgagc gcccgacgag ttcaacgtga tcatcgagat cccgatgaat gccgacccga
     2881 tcaagtacga ggtcgacaaa cagagcggtg cgctcttcgt cgaccgtttc atgagcaccg
     2941 cgatgcacta tccgtgcaac tacggctatg tgccgcagac gctttcggat gacggcgacc
     3001 cggtcgatgt cctcgtgatc acgccgtttc cgctccattc gggcgtggtc gtgacgtgcc
     3061 ggccgatcgg cgtgctgaag atgcaggacg aagccggcgg cgatgccaag ctgctcgccg
     3121 tgccgatcga caaaatcctg tcgatctacc accattggca aaagccccag gacatgaacg
     3181 agctgcgtct gcggcagatc cagcatttct tcgagcacta caaagacctg gaaccgggca
     3241 agtgggtgaa ggtcgaagcc tgggagggcc ccgagtcggc gcgcgaagaa atccgccagg
     3301 gcatcctcag ctaccgtgac agtgagcaga agaaatagcc ttcacatgct gaagtctctc
     3361 gggcgtctcg tcctgttcgt gctcgtcgtc ggcgccgccg cgccggttct ggcgcaacgc
     3421 ctgccgcaag gcgttgtcgc ggtgaccgcg gtcgaaggtg tcgacgaata ccggcttgcc
     3481 aatggcttgc agattctgct catccccgac gactcgaagc cgacgaccac ggtgaacctg
     3541 acctaccggg tcggttcgcg ctacgagaac tacggcgaga ccggcatggc gcacctgctc
     3601 gaacacctgc tgttcaaggg cacgcccacg catcgcaccg tctgggccga gttcgagaag
     3661 cgcggcctcg ccgccaacgg cagcaccagc ttcgaccgca ccaactacac cgcgcacttc
     3721 tcggcgaacg cagacaacct gcagtggtat ctcggctggc tcgccgatgc catggtcaac
     3781 agtttcatcg cgagaaagga cctcgacacc gagatgaccg tcgtgcgcaa cgagatggag
     3841 cgcggcgaga acgaacccga cggcgtgctg ctgcgcgaaa cgatggcggc catgttcgac
     3901 tggcacaact atggcaagag cacgatcggt gcgcgcagcg atgtggaaaa cgtcgacatc
     3961 ccgcgcctgc aggcgttcta tcgtctgtac taccagcccg acaacgcgac cctgatcgtc
     4021 tcggggaagt tcgatgtcgc ggcggtgctc aatcggatct cgggcagctt cggcaagatc
     4081 cccaggccga cgcgcaagct cgcctttcac tacacgctcg acccggccca ggacggcgaa
     4141 cgcagcgtga cggtgcggcg caacggcgga gccccgctga tgatcgcggc gtatcacgtg
     4201 cccgcggctt ccgcgcccga tttcgccgcc gtcgaagtgc tcgcgctggt ccttggagac
     4261 acgccttccg ggcgcctgca caagggcctc accgagcagc aactggcagc cagcaccttc
     4321 gcattcgcct atgacctcgc cgagccttcg gtgttcgtca ccggcgcgca gctcgcgccg
     4381 gggcaggacg tggacaaggc gcgtacggcg ctgctcgccg tcgacgaatc ggtgctgcgc
     4441 gagccgatca ccgcggaaga actggcgcgc gccaaggcca agtgggcaaa gaactgggag
     4501 cagtccttca ccaatcccga aacggtcggc atcgcgcttt ccgaatcggt tgcgcaaggc
     4561 gactggcgcc ttttcttcct gacccgcgat cgggttcgcg atgtcgcgct cgccgacgtg
     4621 caacgcgtcg ccggccaata cctgctgccc tccaaccgca cgctcggcac ttatctgccg
     4681 gccgatgcgc cgttgcgggc gccggccccg atccgggtgg acctggccca gagcatgaag
     4741 gatttcaagc cacaggccgc ggcggcgaag gtcgaggctt tcgacgcgac gccggccaac
     4801 ctcgatgctc gcacccagac cttcgcggtc ggcggcgtca aggcggccct gctgcccaag
     4861 gggacacgcg gcggggcggt gcgggcgacg ctgacgctgc gcttcggcga cgagaagagc
     4921 ctcttcggcc tcggcgaggt cccggattcg gtcgccgcgc tgctcgacaa gggcacgcgg
     4981 acgctgacgc gcgagcagat ccaggaccgt ctcgaccagt tgaagaccga gctctcgatc
     5041 agcagcacac cgggccgcgt gacgctctcg ctggcgacgc gccgcgagca tctgccggcg
     5101 gcgatcgcgc tggtcggcga cctgctgcgc aatccggtct ttccggaggc ggccctgctc
     5161 gaactgaagc agcagtcgat caccgagatc gagcagcagc gcagggaacc gaacgcgctg
     5221 gccgagaaca cgctgggccg ttggggcaat ccctatccac gcggggacgt gcgctacgtc
     5281 tcgaccttcg acgagacggt ggaggacgtg agggcggtga cgctcgacaa gctgcgcgag
     5341 ttccacgcgc gtttctacgg cgcgggcgcg ggcgagttcg ccgcggtcgg tgatctcgat
     5401 ccggcggcgg tccgcacggc gctgcaggcg gcgttcgccg gctgggagcg cggggccgcg
     5461 ttcacacggg tgccgcgccc gctcgttgcc gtcaagcccg atcggctctt gctcgacacg
     5521 cccgacaagc agaacgcgac gctgctggtg cgggaaagct ttccggtctc ggatagcgac
     5581 ccggactacc cagccttgat gatggccaac ttcctactcg gcggcggggg caactcgcgg
     5641 ctgtggaagc gcattcgcga aggcgagggc ctgtcgtacg acgtgcggac cggcatcgtc
     5701 tggagcaact tcgaggcgaa ttcgccctgg caggccagcg ccatctatgc gcccccggtg
     5761 cgggcgagag tcgaggctgc tttccgcgag gagatcgcgc gcgcgctcaa ggacggcttc
     5821 acggcccagg agttgagcga aggccagcgc ggcttgctca atttccggcg tctgtcgagg
     5881 gcgcaggatg cgagcctgtc cgcggccctt gccaacaacc tgtacctcga ccggaccttc
     5941 gcgttcgcgg cgaagatcga cgccgctctc agtgcgctca cgcccgcgca ggtgaacagc
//
LOCUS       DASVHM010000384         4553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_26948, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000384 DASVHM010000000
VERSION     DASVHM010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4553
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26948"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1562)
                     /locus_tag="VF308_07250"
     CDS             complement(<1..1562)
                     /locus_tag="VF308_07250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEX7436484.1"
                     /translation="MTRSNSVYGRCVGLLQSGALIVALAFVASPRMVWAQGADATVLD
                     AREALRKKDRNRLASDRAAAAAERNPLAMWVDYWELSNRLSDAQQDELNAFAARWNGT
                     YVEDRLRNDWLLELGRRRDWNNFAAEFPRFKMNDDREVACYALLVDHLQGKDVREAAP
                     AAWLAQREADDGCALMAATLYDAKQLSAATAWRKARVSIDANRPRAARQAVLLVNAAA
                     VKTLDEVIDSPAHYLRAATGNGRTGAELTALALMRMASNDADAAAALLNERWERALPA
                     DLSAWAWAAVAKQAALKLQPEAADHFLRASKTAAKSGTSIDWPDDTLAWKVRAALRAD
                     NGRARWQQVVQAIDAMSAGEQREPAWVYWKARGLQALAKDSQDGESLRALSRELLASL
                     VGQLNFYGTLAAEDAAQGLTLPLRPAPLTPAEVDAASANPGLARALQLIAIGLRNEGV
                     REWNFTLLGMSDRELLAAAQMACDREVWDRCINTSERTRAEVDMEQRFPTPFRKEVSA
                     RAREIGLDAAYV"
     gene            1620..2168
                     /locus_tag="VF308_07255"
     CDS             1620..2168
                     /locus_tag="VF308_07255"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEX7436485.1"
                     /translation="MRHDLRTRLLAERMQFAASAAAAGAEAALARELRALVAELEPQC
                     LGLYWPQRAEFNAPAALAADPGPAISALALPFARRTPPQMHYRAWDGTPPSLRDECGI
                     PSPKGAAVVPDVVLVPCVGYTESGFRLGYGGGYFDRWLAAHPHVCAVGVAWFGSRIDE
                     AEFAPLAHDVRLALIVTERGPV"
     gene            2184..2771
                     /locus_tag="VF308_07260"
     CDS             2184..2771
                     /locus_tag="VF308_07260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEX7436486.1"
                     /translation="MTAAPPDPARDALRKKLVAARLALPDRLERAVQLQSVLRAWLAG
                     RREGSIGAYWPIKGEFDPLPALYRWTEGGVDGAPRRIGLPVADRATGSLRFHVWYPGC
                     PMEQDAYDIPKPKDTDEFMPALLVVPCLGFGPGGVRLGYGGGFFARTLATLAPSPVMV
                     GVSYTHGFLPMLRLGPGELQLDALLTEDGVMWQRE"
     gene            complement(2781..3662)
                     /gene="metF"
                     /locus_tag="VF308_07265"
     CDS             complement(2781..3662)
                     /gene="metF"
                     /locus_tag="VF308_07265"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019702822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEX7436487.1"
                     /translation="MNPSHPRAALPISLEFFPPKTPEGVTKLKQVRAQLYVLRPQYCS
                     VTYGAGGSTQEGTFQTIKAILEEGCEGAPHFSCIGASPESLRAALGAYRDAGVHRVVA
                     LRGDLPSGYGGFGGFGEFRYSSDLVAFIRSETGAHFHIEVAAYPETHPQAPSPQADLQ
                     AYLTKVRAGASSAITQMLFNSDAYFRFVDETRALGATIPVVPGIMPIINASGIIRFAE
                     NCGADIPRWMRLRLQSFGDDSASIRAFGLDVITRLCEQLCAGGAPGLHFYTMNQSPAT
                     LEICRRLGIGSANGAAP"
     gene            complement(3659..4429)
                     /locus_tag="VF308_07270"
     CDS             complement(3659..4429)
                     /locus_tag="VF308_07270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010104904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEX7436488.1"
                     /translation="MRADQLIVSRGLAPTRSAAQRLIDHRGVRWLAPGGWAVPRKAGE
                     DLPEDCGLEVIDDAEVRFVSRGGLKLDSALAHCGIDVRGAVCLDIGQSTGGFTDALLQ
                     RGAARVVGIDVGHGQLHARLAADPRVTGLEGVNARSLAGAAVAAATPGGGFDLVVADL
                     SFISLTLVLPEIARHLGAHGHALLLVKPQFELQPQDIGKGGLVKDAAAYPRVEARIRS
                     ACAVEGLALRDYVASSIEGGDGNREFFAWAGHAPAQQP"
     gene            complement(4434..>4553)
                     /locus_tag="VF308_07275"
     CDS             complement(4434..>4553)
                     /locus_tag="VF308_07275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012207716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEX7436489.1"
                     /translation="VARLHLKKVGAMLTELTDEQAAYIGVSKAGPYKPDTYRY"
BASE COUNT          622 a         1609 c         1596 g          726 t
ORIGIN      
        1 tacacgtagg ccgcgtcgag gccgatctcg cgcgcccgcg ccgagacctc cttgcgaaac
       61 ggcgtcggga agcgctgctc catgtcgacc tcggcgcggg tgcgctcgct ggtgttgatg
      121 cagcgatccc agacctcgcg gtcgcaggcc atctgcgcgg cggcgagcaa ctcgcggtcg
      181 ctcatgccga gcagcgtgaa gttccattcg cgcacgccct cgttgcgcag gccgatcgcg
      241 atcagttgca aggcgcgggc aaggcccgga ttcgcactcg ccgcatccac ctccgccggc
      301 gtcagcggcg caggtcgcag cggcagggtg agcccctgcg ccgcgtcttc ggcggcgagc
      361 gtgccgtaga agttcaactg tccgaccagg ctcgccagca attcccggct cagtgcccgc
      421 agggattcac cgtcctgcga atccttcgcc aatgcctgca ggccgcgggc cttccagtag
      481 acccaggccg gctcgcgctg ctcgcccgcg ctcatcgcgt cgatcgcctg caccacctgc
      541 tgccagcgcg cacggccgtt gtcggcgcgc agggcggcgc gcaccttcca ggccagcgtg
      601 tcatcgggcc agtcgatgct ggttccggac ttggccgcgg tcttgctggc gcgcaggaag
      661 tgatccgccg cttcgggttg cagtttcagc gccgcctgct tcgcgaccgc cgcccaggcc
      721 caggccgaga ggtcagcggg tagcgcgcgt tcccagcgtt cgttgaggag cgctgccgcc
      781 gcgtcggcat cgttcgacgc catgcgcatc agggccagag ccgtcagttc cgcgccggtg
      841 cggccgttgc ccgtcgccgc gcggaggtag tgcgccgggc tgtcgatcac ctcgtcgagc
      901 gtcttcacgg ccgccgcatt gacgagcagc acggcctggc gcgccgcgcg cggccggttc
      961 gcatcgatcg agacgcgcgc cttgcgccag gccgtggcgg cgctcaactg cttcgcgtcg
     1021 tagagcgtcg cggccatgag cgcgcagccg tcgtcggctt cgcgctgggc gagccatgcg
     1081 gcgggcgcgg cctcgcgcac gtccttgccc tgcagatgat cgacgagcag cgcgtagcag
     1141 gcgacttcgc ggtcgtcgtt catcttgaag cgcgggaatt cggcggcgaa attgttccag
     1201 tcgcgccgcc ggccgagttc gagcaaccag tcgttgcgca ggcgatcctc gacgtaggtg
     1261 ccgttccagc gcgccgcgaa ggcgttgagc tcgtcctgct gcgcgtcgct gagccggttg
     1321 ctcagctccc agtagtcgac ccacatggcc agcgggttgc gctccgcggc cgcggcggcg
     1381 cggtctgacg ccaagcggtt gcgatccttc ttgcgcaagg cctcgcgcgc gtcgagcacg
     1441 gtcgcgtcgg cgccttgcgc ccagaccatg cggggcgagg cgacgaaggc gagcgcgacg
     1501 atgagcgcgc cgctctgcag caggccgacg cagcgcccat atactgaatt cgaccgagtc
     1561 attcgcttca acgtcttctt ctcatcttga tcgccgctca aagcccccca ccgctgccgg
     1621 tgcgtcacga tttgcgcacc cgtctgctgg ccgagcgcat gcaatttgcc gccagcgcgg
     1681 cggccgccgg ggccgaggcg gccctggcgc gcgaactgcg cgcgctggtg gccgagctgg
     1741 aaccgcagtg cctcggcctc tattggccgc agcgcgctga atttaacgca ccggcggccc
     1801 tcgcggccga cccggggccc gcaatatcgg cgttggcgtt gccttttgcg cgccggacgc
     1861 ctccgcagat gcactaccgc gcctgggacg gcacgccgcc gtcgttgcgc gacgagtgcg
     1921 gcattccgtc acccaagggc gccgcggtcg tcccggatgt cgttctcgtc ccgtgcgttg
     1981 gctacaccga atcggggttt cgcctgggct acggcggtgg ctacttcgac cgctggctcg
     2041 ccgcgcatcc gcacgtctgc gcggtcggtg tcgcgtggtt cgggtcgcgc atcgacgagg
     2101 ctgaattcgc gccgttggcg cacgacgttc ggctcgcgct gatcgtcacc gagcgcggcc
     2161 cggtctgaag cgaaagtctt gcgatgacgg cagcaccgcc cgatcccgcc cgtgacgccc
     2221 tgcgcaagaa actcgtggcg gcgcggctcg ccctgcccga tcggctcgag cgcgcggtgc
     2281 agctgcaaag cgtgctgcgg gcctggctcg ccgggcgccg cgagggttcg atcggcgcct
     2341 actggccgat caagggcgaa ttcgacccgc tgcccgcgct ctaccgctgg accgaaggcg
     2401 gcgtcgatgg cgcaccgcgg cgcatcggcc tgccggtcgc cgaccgcgcc accgggtcgc
     2461 tgcgctttca cgtctggtac ccgggctgcc cgatggagca ggacgcttac gacatcccga
     2521 agccgaagga caccgacgaa ttcatgcccg cgctcctggt cgtgccctgc ctcggtttcg
     2581 ggcctggcgg cgtgcgcctc ggctacggcg gcggcttctt cgcacggacc ctggcgacgc
     2641 tcgcgcccag tccggtgatg gtcggcgtga gctacaccca cggcttcctg ccgatgcttc
     2701 gcctcggccc gggcgagctt cagctcgacg cgctgctcac cgaggacggt gtgatgtggc
     2761 agcgcgaatg agcgacgtgt tcagggcgct gcgccgttgg cgctgccgat cccaaggcgc
     2821 cggcagatct ccagcgtcgc cggactctgg ttcatcgtgt agaagtgcag gcccggcgcg
     2881 ccacccgcgc acagctgctc gcacaggcgc gtgatgacgt cgagaccgaa tgccctgatc
     2941 gaggcgctgt cgtcgccgaa gctctgcagg cgcagccgca tccagcgcgg gatgtcggcg
     3001 ccgcagttct cggcgaagcg gatgatgccg ctcgcgttga tgatcggcat gatgcccggc
     3061 accacgggga tcgtcgcgcc aagtgcccgg gtctcgtcga cgaagcggaa ataggcatcg
     3121 ctgttgaaga gcatctgcgt gatcgccgaa ctcgcgcccg cccgcacctt ggtcaggtag
     3181 gcctgcaggt cggcctgcgg cgagggcgcc tgcggatgcg tctcgggata ggcggcaacc
     3241 tcgatgtgga agtgagcgcc ggtctcgctg cggatgaagg cgaccaggtc gctcgaatag
     3301 cggaactcgc cgaagccgcc aaagccgccg tagccgctcg gcaagtcgcc gcgcagcgcg
     3361 acgacgcggt gcacgcccgc gtctcgatac gcgccgagag ccgcgcgcag cgactcgggg
     3421 ctcgcgccga tgcacgagaa gtgcggcgct ccttcgcagc cctcttcgag aatcgccttg
     3481 atggtctgga aggtgccttc ctgggtcgag ccaccggcgc cgtatgtcac cgaacagtac
     3541 tgtggccgca gcacatagag ctgggcgcgc acctgcttca gcttggtcac gccttccggc
     3601 gtcttcggcg gaaagaactc gaggctgatg ggcaatgcgg cccgtgggtg cgatgggttc
     3661 atggctgttg tgcgggcgcg tgcccggccc acgcgaagaa ctcgcggttg ccgtcgccgc
     3721 cctcgatcga actcgcgacg tagtcgcgca gggcgagacc ttcgaccgcg caggcgctgc
     3781 ggatgcgggc ctccacgcgc gggtaggcgg ccgcatcctt gacgagcccg cccttgccga
     3841 tgtcctgcgg ctgcagttcg aactggggct tgacgagcag cagggcgtgg ccgtgcgcgc
     3901 cgagatgccg ggcgatttcg ggcagcacca gcgtcagcga gatgaacgac aggtcggcga
     3961 cgacgaggtc gaagccaccg ccaggcgtcg ccgccgcgac ggcggcgccc gcgaggctgc
     4021 gcgcgttgac gccttcgagc cccgtcacgc gcgggtctgc ggccaggcgc gcatgcagct
     4081 ggccgtgccc gacgtcgatg ccgacgacgc gtgccgcgcc gcgttgcagc agcgcgtcgg
     4141 tgaagccgcc ggtgctctgg ccgatgtcga ggcagaccgc gccgcgcaca tcgatgccgc
     4201 agtgcgcgag cgcgctgtcg agcttgagtc cgccgcgcga gacgaagcgc acttcggcgt
     4261 cgtcgatgac ctcgaggccg caatcctcgg gcaggtcttc accggccttg cgcggaacgg
     4321 cccagccgcc cggcgcgagc cagcgcacgc cgcggtgatc gatcaggcgc tgcgcggccg
     4381 aacgcgtcgg cgccaagccg cgagaaacga tcagctgatc ggcccgcatc gcctcagtag
     4441 cggtaggtgt cgggcttgta cggaccggcc ttgctcacgc cgatgtacgc cgcctgctcg
     4501 tcggtcagct cggtcagcat cgcgccgacc ttcttcaggt gcagccgcgc gac
//
LOCUS       DASVHM010000385         2400 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_967265, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000385 DASVHM010000000
VERSION     DASVHM010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2400
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_967265"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..357)
                     /locus_tag="VF308_07280"
     CDS             complement(<1..357)
                     /locus_tag="VF308_07280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005667699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEX7436490.1"
                     /translation="MEPSFSTRVALVLFVVAAIFIFQTFKIVPQQHAWVVERLGKYDR
                     TLAPGLEFVWPFLERVAYKHSLKEVPLDVPSQVCITRDNTQLQVDGIIYFQVTDPMRA
                     SYGSSNYISAITQLAQT"
     gene            complement(373..819)
                     /locus_tag="VF308_07285"
     CDS             complement(373..819)
                     /locus_tag="VF308_07285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020229352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HEX7436491.1"
                     /translation="MDLSNASVWWIAAGVAVAAELATGTFYLLMIALGLAAGALAAQF
                     GSAEGMQFVAAAIVGGGATAFWHWRRVSRAGPALPTARDRDVNLDIGERVHVSAWADD
                     GTARVSYRGSTWAARLQPGAPPVAGEHVVAAVEGNWLVLAPRVATH"
     gene            955..>2400
                     /locus_tag="VF308_07290"
     CDS             955..>2400
                     /locus_tag="VF308_07290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Orn/Lys/Arg decarboxylase N-terminal
                     domain-containing protein"
                     /protein_id="HEX7436492.1"
                     /translation="MLRFQFPIVIIDEDFRSENASGLGIRALAAAIEKEGFEVLGATS
                     YGDLSQFAQQQSRTSAFILSIDDEEFTEGPDLDPVVLNLRKFITEIRFKNAEIPIYLY
                     GETRTSQHLPNDILRELHGFIHMFEDTPEFVARHIIREARAYLDGVAPPFFKALLDYA
                     QDGSYSWHCPGHSGGVAFLKSPVGRMFHQFFGENMLRADVCNSVDELGQLLDHTGPIA
                     QSERNAARIFNADHCFFVTNGTSTSNKMVWHHTVAPGDVVVVDRNCHKSILHAIVMTG
                     SIPVFLRPTRNHYGIIGPIPKSEFMPDAIRAKIAAHPLLHGVDAAKVKPRILTLTQST
                     YDGVLYNTETIKHALDGYIETLHFDEAWLPHAAFHKFYGTFHSMGKNRPRPKDQIVFA
                     TQSTHKLLAGISQASQVLVQDSQTRKLDAHLFNEAYLMHSSTSPQYAIIASCDVSAAM
                     MEAPGGRALVEESISEALDFRRAMRKVDAEYG"
BASE COUNT          425 a          832 c          780 g          363 t
ORIGIN      
        1 cgtctgcgcg agctgggtga tcgccgagat gtagttgctc gagccgtagc tcgcgcgcat
       61 cgggtcggtg acctggaaat agatgatgcc gtcgacctgc agctgggtgt tgtcgcgcgt
      121 gatgcagacc tggctcggca cgtcgagcgg cacttccttc agcgagtgct tgtaggcgac
      181 gcgctcgagg aacggccaaa cgaactcgag gccaggcgcg agcgtgcggt cgtacttgcc
      241 gaggcgctcg acgacccagg cgtgctgctg cggaacgatc ttgaaggtct ggaagatgaa
      301 gatcgcggca acgacgaaga ggaccagcgc caccctcgtc gagaaggacg gttccatgcg
      361 gagtgctccg gttcagtgag tggcgacgcg aggggcgagg acgagccagt tgccttcgac
      421 cgcggcgacg acgtgctcgc cggcgaccgg cggcgcgccc ggctgcaggc gggcggccca
      481 ggtcgagccg cgatagctca cccgcgccgt gccgtcgtcg gcccaggccg agacgtggac
      541 gcgctcgccg atgtcgaggt tgacgtcgcg gtcgcgcgcc gtcggcagcg ccgggccggc
      601 gcgcgagacc cggcgccagt gccagaacgc ggtcgcgccg ccgccgacga tcgcggcggc
      661 gacgaattgc atgccttcgg ccgatccgaa ctgggcggca agggcacccg ccgcgaggcc
      721 gagcgcgatc atgagcaggt agaacgtgcc ggtggcgagc tcggccgcga cggcgacgcc
      781 ggcggcgatc caccacacac tggcattgga gagatccatc gctgcctccg cgcgactggc
      841 gcaccggcga gtgtaggggt gcacggtctt gcggcgctca ttcccacgac cgacattccc
      901 gcccgcgacg gccctacact gcgcgctttc cgaaccgcct gccagggctc gccgatgctg
      961 cgcttccagt tccccatcgt catcatcgac gaggacttcc gctccgagaa cgcctcgggg
     1021 ctgggcatcc gcgcgctcgc cgcggcgatc gagaaggaag gcttcgaggt gctgggcgcc
     1081 accagctacg gcgacctgtc gcagttcgcg cagcagcaaa gccggaccag cgcgttcatc
     1141 ctgtcgatcg acgacgagga gttcaccgag ggccccgatc tcgacccggt ggtgctcaac
     1201 ctgcgcaagt tcatcaccga gatccgcttc aagaacgccg agatcccgat ctatctctac
     1261 ggcgagacgc gcacctcgca gcacctgccg aacgacatcc tgcgcgagct gcacggcttc
     1321 atccacatgt tcgaggacac gccggagttc gtggcgcgcc acatcatccg cgaggcgagg
     1381 gcctatctcg acggcgtcgc gccgccgttc ttcaaggcgc tgctcgacta cgcccaggat
     1441 ggctcgtact cgtggcactg cccgggccac tccggcggtg tcgccttcct gaagagtcct
     1501 gtcggccgga tgttccacca gttcttcggc gaaaacatgc tccgcgccga cgtatgcaac
     1561 tcggtcgacg agctcggcca gctgctcgat cacaccgggc cgatcgcgca gagcgagcgc
     1621 aacgccgcgc ggatcttcaa cgccgaccac tgcttcttcg tcaccaacgg cacgagcacg
     1681 tcgaacaaga tggtctggca ccacaccgtc gcgcccggcg acgtcgtcgt cgtcgaccgc
     1741 aactgccaca agtcgatcct gcacgcgatc gtcatgaccg gatcgatccc ggtgttcctt
     1801 cggccgacgc gcaatcacta cgggatcatc ggcccgatcc cgaagagcga gttcatgccg
     1861 gacgcgatcc gcgccaagat cgcggcccat ccgctgctcc atggcgtcga cgcagcgaag
     1921 gtcaagccgc gcatcctgac gctgacgcaa agcacctacg acggcgttct ctacaacacc
     1981 gagacgatca agcacgcgct cgacggctac atcgagacgc tgcacttcga cgaggcctgg
     2041 ctgccgcacg ccgcgttcca caagttctac ggcaccttcc attcgatggg caagaaccgg
     2101 ccgcgcccga aggaccagat cgtcttcgcg acgcagtcga cgcacaagct gctcgccggc
     2161 atcagccagg cgtcgcaggt gctggtgcag gactcacaga cgagaaagct cgacgcccac
     2221 ctcttcaacg aggcctacct gatgcacagc tcgacgagcc cgcagtacgc gatcatcgcg
     2281 tcgtgcgacg tctcggcggc gatgatggaa gcgccgggcg gccgcgccct ggtcgaggag
     2341 agcatttccg aggcgctcga ctttcgccgc gcgatgcgca aggtcgacgc cgaatacggc
//
LOCUS       DASVHM010000386         2904 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_749908, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000386 DASVHM010000000
VERSION     DASVHM010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2904
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_749908"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..937
                     /gene="purH"
                     /locus_tag="VF308_07295"
     CDS             <1..937
                     /gene="purH"
                     /locus_tag="VF308_07295"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEX7436493.1"
                     /translation="RLRYGENPHQNAAFYRDLEPAPGSLARYMQLQGKELSYNNIADA
                     DAAWECVKSFDGPACVIVKHANPCGVALGANSAEAYAKAFKTDPTSAFGGIIAFNGGV
                     DAATAALVGKQFMEVLIAPAYTPEALALLAAKARVRVLQIALPPGGHTDAERGRNAQD
                     FKRVGSGLLIQSADNLETTRADLKVVTRMQPTPEQLTDLLFAWKVAKYVKSNAIVFCA
                     GGMTLGVGAGQMSRVDSARIAGIKAANAGLTLQGSAAASDAFFPFRDGLDALIDAGAT
                     CVIQPGGSMRDDEVIAAADERGIAMVFTGVRHFRH"
     gene            947..1564
                     /locus_tag="VF308_07300"
     CDS             947..1564
                     /locus_tag="VF308_07300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX7436494.1"
                     /translation="MKLPEAAGLLLAFIARLITGAQGHWYGCPPKSEQRIYFANHQSH
                     FDWVLLWAALPRDLRGVTRPIAARDYWTSSPLKHWITREIFNAVYVSRQRSDDEDPLE
                     PLMEALRHGDSLVIFPEGTRGHAADPSPFKSGLYALAQAFPDVQLIPAWIDNVQRVMP
                     KGEVVPVPILCTVTFGAPVALRPGEERRAFLDRARAAVMALRAIH"
     gene            1564..2532
                     /locus_tag="VF308_07305"
     CDS             1564..2532
                     /locus_tag="VF308_07305"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEX7436495.1"
                     /translation="MGSLRSLSVTQQVGLLFVTLFGALALVTLVAFSRSLRERDEVQQ
                     ALVDRFWRDLRAVWAGALLFWIAWASGAFVSTLVFGVLSFLALREFVTLTHTRRGDHR
                     SLLLAFFIVLPAQYVLVATRLFNAFTVFIPVYVFLAIPVISAFGNDPKRFLERTAKIQ
                     WGIMVCVYGMSHAPALLLLDLPAYAGRGAFLVLYLVLVVAAAQIAQEVASRTLRRRPV
                     ARAISRSFSWRAWSAGLLAAALVGAMLYWTTPFKPWAALAMGFVAGGAGTLGEFVMEA
                     LKRDAGVRSWSGRPSVTGAVGLLDRAAPLCFAAPVFFHSVRWYFGV"
     gene            2546..>2904
                     /gene="ruvC"
                     /locus_tag="VF308_07310"
     CDS             2546..>2904
                     /gene="ruvC"
                     /locus_tag="VF308_07310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011806752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEX7436496.1"
                     /translation="MRILGIDPGLRTTGFGVVDCEGPTLRYVASGTIRSDSKQSGPLP
                     ARLKIIFDGVRELSARYRPHCASVEIVFVNVNPQSTLLLGQARGAALTALVSSELEVA
                     EYTALQMKKAIVGHGKA"
BASE COUNT          404 a         1027 c          981 g          492 t
ORIGIN      
        1 gaggctgcgc tacggcgaaa acccgcacca gaacgcggcg ttttaccgcg acctcgagcc
       61 ggcgcccggc agcctcgcgc gctacatgca gttgcagggc aaggagcttt cgtacaacaa
      121 catcgccgac gccgacgcgg cctgggaatg cgtgaagagc ttcgacggcc cggcctgcgt
      181 gatcgtcaag catgccaatc cgtgcggcgt ggccctcggc gcgaactcgg ccgaggccta
      241 cgcgaaggcc ttcaagaccg atccgacctc ggcattcggc ggcatcatcg ccttcaacgg
      301 cggcgtcgac gcggcgaccg cggcgctcgt cggcaagcag ttcatggagg tgctgatcgc
      361 gcccgcgtac acgcccgaag cgctcgcgct gctggccgcc aaggcgcgcg taagggtctt
      421 gcagatcgcg ctgcccccgg gcggccacac cgatgcggag cgcgggcgca acgcgcagga
      481 ttttaagcgc gtcggttcgg gcctcttgat ccagtcggcc gacaacctcg agacgacgcg
      541 tgccgacctg aaagtcgtga cacgcatgca gccgaccccc gagcagctga ccgacctgct
      601 cttcgcctgg aaggtcgcga aatacgtgaa gagcaatgcg atcgtgttct gcgccggggg
      661 catgacgctc ggcgtcggcg cggggcagat gagccgcgtc gactcggcgc gcattgccgg
      721 catcaaggcg gcgaacgccg gcctgacgct gcagggctcg gcggccgcga gcgatgcgtt
      781 cttcccgttt cgcgacggcc tcgacgcgct gatcgatgcc ggcgccacct gcgtgatcca
      841 gcccggcggt tcgatgcgcg acgacgaagt gatcgccgcc gccgatgagc gcggcatcgc
      901 gatggtcttc accggcgtgc gacatttccg tcactagtcc gcagcgatga agctgcccga
      961 agctgccggc ctcctcctcg cgttcatcgc acgcctgatc accggagcac agggccactg
     1021 gtacgggtgc ccaccgaaat ccgaacagcg catctacttc gcgaaccacc agagccactt
     1081 cgactgggtc ctgctctggg ccgcgctgcc gcgcgatctg cgcggcgtga cccggccgat
     1141 cgcggcgcgc gactactgga cctcgtcgcc gctcaagcac tggatcacgc gcgagatctt
     1201 caacgcggtg tacgtgagcc ggcagcgcag cgacgacgaa gatccgctcg agccgctgat
     1261 ggaggccttg cgccatggcg actcgctcgt catctttccg gagggcacgc gcggccatgc
     1321 cgccgaccct tcccccttca agtcggggct ctatgcgctc gcccaggcct tccccgacgt
     1381 gcagctgatc ccggcctgga tcgacaacgt gcagcgggtg atgcccaagg gcgaggtcgt
     1441 gccggtcccg atcctgtgca cggtcacgtt cggcgcgccg gtcgcactgc ggccgggcga
     1501 agagcgtcgc gcctttctcg accgggcgcg cgcggcggtg atggcgctgc gcgcgatcca
     1561 ctgatgggca gcctgcgctc tctcagcgtg acgcagcagg tcggcctgct gttcgtgacg
     1621 ctcttcggcg cgctcgcgct ggtcacgctg gtcgccttca gccggtcgct gcgggaacgc
     1681 gatgaggtcc agcaagccct ggtcgaccgg ttctggcgcg acctgcgcgc ggtgtgggcc
     1741 ggcgcgctgc tgttctggat cgcctgggcc tcgggtgcct tcgtctcgac gctcgtcttc
     1801 ggcgtgctgt ccttcctcgc cctgcgcgaa ttcgtgaccc tgacgcacac gcgccgcggc
     1861 gatcatcgca gcctcctgct ggcattcttc atcgtcctgc cggcgcagta tgtgctcgtc
     1921 gcgacgcgac tcttcaacgc cttcacggtc ttcatcccgg tctacgtgtt cctcgccatc
     1981 ccggtcatca gcgcgttcgg caacgatccg aaacgcttcc tcgagcgcac cgcgaagatc
     2041 cagtggggca tcatggtctg cgtctacggc atgagccacg cgcccgcctt gctgttgctc
     2101 gacctgcccg cctatgcggg gcggggcgcc ttcctcgtgc tctacctcgt gctggtggtg
     2161 gcggccgcgc agatcgcgca ggaggtggcg agccgcacgc tgcgccgccg cccggtggca
     2221 cgcgcgatca gccgctcgtt ctcgtggcgc gcctggtcgg cgggcctgct cgcggcggcc
     2281 ctcgtcggcg cgatgctcta ctggaccacg ccgttcaagc cctgggcggc gctggcgatg
     2341 ggcttcgtgg ccggcggcgc cggcacgctg ggcgaattcg tgatggaggc cttgaagcgc
     2401 gacgccggcg tgcgcagctg gagcggacgg ccttccgtca ccggcgcggt cggcctgctc
     2461 gaccgcgccg cgccgctctg cttcgccgca ccggtcttct ttcattcggt gcgctggtat
     2521 ttcggggtct aggttggccg gcgtcatccg catcctcggc atcgacccgg gtcttcggac
     2581 caccgggttc ggtgtggtcg actgcgaagg gccgacgctg cgctacgtgg cgagcggcac
     2641 gatccggagc gactcgaaac agtcgggccc cctgcccgcg cgcctgaaga tcatcttcga
     2701 cggcgtgcgc gagctgagtg cgcgctaccg gccgcactgc gcgtcggtcg agatcgtctt
     2761 cgtcaatgtc aacccgcagt cgacgctgct gctcggccag gcgcgcggcg cggcgctgac
     2821 cgcactggtc tcgagcgaac tcgaggtcgc cgagtacacc gcgctgcaga tgaagaaggc
     2881 catcgtcggc cacggcaagg ccaa
//
LOCUS       DASVHM010000387         1762 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_677604, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000387 DASVHM010000000
VERSION     DASVHM010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_677604"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..353
                     /locus_tag="VF308_07315"
     CDS             <1..353
                     /locus_tag="VF308_07315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012362760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7436497.1"
                     /translation="RRTQLAGTLSGGERQMLAVARALMGRPALLMLDEPSLGLAPLVV
                     RDIFATITALRATGVTILLVEQNARAALEVADYGYVLEMGEIALEGPAADLALDPRVI
                     ETYLGAVQKKTAGA"
     gene            382..870
                     /locus_tag="VF308_07320"
     CDS             382..870
                     /locus_tag="VF308_07320"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX7436498.1"
                     /translation="MPDQSPEPTAAAAGGLDASPLTRLVGYASTRASIELRKVFARHM
                     KPLDLKVVEFSILMLVAANPQANQKQIGQTLDLSAPNMAVTLDRMVERGWVQRVRSER
                     DRRAQHVRLTDKGRDVVQRAAKISTTMEDAALRMLSAAERALLIELLLKVAGVESARA
                     ER"
     gene            954..>1762
                     /locus_tag="VF308_07325"
     CDS             954..>1762
                     /locus_tag="VF308_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEX7436499.1"
                     /translation="MKRPPNIVFIVADDLGFADLGCYGGRVPVSPVLDRLAAGGLRLT
                     QGYANSPVCSPTRFALMTARYQYRLRGAAEEPINSRSRGSTTLGLPPEHPTLASLLKA
                     AGYRTALIGKWHLGYPPAFSPLRSGYEEFFGPMSGGVDYFSHCDSRGTHDLWLGEEEH
                     REEGYLTDLISRRAVDWIGRVAPGGAPFFLSVHYTAPHWPWETRDDAALAAEVRNNLF
                     HLHGGNIHTYRRMIEHMDEGIGAIMAALEAQGVARDTLVVFTSDNGGERFS"
BASE COUNT          279 a          644 c          578 g          261 t
ORIGIN      
        1 aacgtcgcac ccagctcgcg ggcacgctct cgggcggtga acggcagatg ctcgcggtcg
       61 cgcgcgccct gatgggcagg cccgcgctgc tgatgctcga cgagccgagc ctgggtcttg
      121 cgccgctcgt cgtgcgcgac atcttcgcca ccatcaccgc cttgcgcgcg accggcgtga
      181 cgatcctgct cgtcgagcag aacgcgcgcg ccgcgctcga agtggccgac tacggctacg
      241 tgctcgaaat gggcgagatc gcgctcgaag ggccggccgc cgatctcgcc ctggatccgc
      301 gcgtgatcga aacttacctg ggcgcagtgc agaagaagac cgcgggcgct tgaccgtcgt
      361 cgcgcccagc ctcgcacctc gatgccggac caaagccccg agccgaccgc cgccgcggca
      421 ggcggcctcg acgcatcgcc cctgacgcgc ctcgtcggct atgcctcgac ccgcgcctcg
      481 atcgagctgc gcaaggtgtt cgcacgccac atgaagccgc tcgatctgaa ggtggtcgag
      541 ttcagcatcc tgatgctcgt cgccgcgaat ccgcaggcca accagaagca gatcgggcag
      601 acactcgatc tctccgcccc caacatggcg gtcacgctcg accggatggt cgaacgcggt
      661 tgggtgcaac gcgtgcgcag cgaaagggac cggcgcgccc agcatgtccg cctcaccgac
      721 aagggccgcg atgtggtgca gcgcgccgcg aagatatcga cgacgatgga agacgccgcg
      781 ctgcgcatgc tgtcggcggc cgagcgcgcg ttgctgatcg aactgctgct gaaggtcgcc
      841 ggcgtcgagt cggcgcgcgc cgagcgctga gcgtttcacg ccgacgctgc gcgcagtgtc
      901 gatggctatc atcgatccgt cgccgctccg agcgaccccc tcatcgcgac cgaatgaagc
      961 gcccgccgaa catcgtcttc atcgtcgccg acgacctcgg cttcgccgac ctcggctgct
     1021 acggcgggcg cgtgccggtg tcaccggtgc tggatcgtct ggccgccggc ggcctgaggc
     1081 tgacccaggg ctatgccaac tcgccggtct gttcgccgac ccgtttcgcg ctgatgacgg
     1141 cgcgctacca gtaccggctg cgcggcgccg ccgaagagcc gatcaacagc cgcagccgcg
     1201 gcagcaccac gctcggcctg ccgcccgaac acccgacgct ggcgtcgctg ctgaaggccg
     1261 cgggctatcg gaccgcgctc atcggcaagt ggcacctcgg ctatccgccc gccttcagcc
     1321 cgctgcgctc ggggtacgag gaattcttcg gcccgatgtc gggcggcgtc gactacttca
     1381 gtcactgcga ttcgcgcggc acgcacgacc tgtggttggg cgaggaagag caccgcgagg
     1441 agggctacct caccgacctg atctcgcggc gcgcggtcga ctggatcggc cgcgtcgcgc
     1501 caggcggcgc gccgttcttt ctcagcgtgc actacaccgc gccgcactgg ccgtgggaga
     1561 cgcgcgacga cgccgcgctc gccgccgagg tcaggaacaa cctcttccac ctgcatggtg
     1621 gcaacatcca cacctaccgc cgcatgatcg aacacatgga cgaaggcatc ggcgccatca
     1681 tggccgcgct cgaagcgcaa ggcgtcgcgc gcgacacgct cgtcgtcttc accagcgaca
     1741 acggtggcga gcgcttctcc ga
//
LOCUS       DASVHM010000388         3383 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_820704, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000388 DASVHM010000000
VERSION     DASVHM010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3383
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_820704"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            209..1087
                     /locus_tag="VF308_07330"
     CDS             209..1087
                     /locus_tag="VF308_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HEX7436500.1"
                     /translation="MQPRLDSRFDTIRALPSAGKGPATPLVPAVSRALALLERLAGAR
                     EPMSLARLAGELALPKSSVHGLCNTLVSFGYLRRQSDGAFLIGPRVMGLAEAFVSGTD
                     VAQEFNALWTDSGAEPDESVVLSVLSGGDALYVGVRNSARPLGLKFTVGMRLPAYLSG
                     SGKAMLSLLPPDEVRRLYAGGLQTRLTKKGPRDVEALLKELALTRRRGYSIDEEAVRE
                     GVCSIGAPVFDASGLAVAGVAVCVNKALLGAGRGERYRLLALAVARSLSERLGADPQR
                     PARAVRPRVRSAGVAA"
     gene            1084..1857
                     /locus_tag="VF308_07335"
     CDS             1084..1857
                     /locus_tag="VF308_07335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008648866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436501.1"
                     /translation="MSAEFILETRELTKEFKGFVAVSKVDLRVRRGTIHALIGPNGAG
                     KTTCFNLLTKFLTPTSGRIVYDGTDITSEKPAHIARRGVVRSFQISAVFGHLSVLENV
                     RVALQRKLGTSYHFWKPERSLGVLDAEAMELLHAVDLEAYAAIPAIELSYGRKRALEI
                     ATTLAMDPKLMLLDEPTQGMGLEDVDRIRSLIKRVAANRTVLMVEHNMSVVASIADTI
                     TVLQRGATLAEGPYAEVSKNPAVVEAYMGSADAELAGAH"
     gene            1860..2564
                     /locus_tag="VF308_07340"
     CDS             1860..2564
                     /locus_tag="VF308_07340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436502.1"
                     /translation="MATFLEITDLHGWYGESHVLHGVNLRVEEGEVVTLLGRNGAGRT
                     STLRAILGLIGSRKGSIKVHGRETVGMATHRIARLGLGYCPEERGIFSSLSAEENLML
                     PPRLAAEGGMSVEQIYAMFPNLKERAASQGSRLSGGEQQMLAVARILRTGARLLLLDE
                     ISEGLAPVIVQKLGEMVGSLRRQGYTIVMVEQNFRFAAPLADRFMVMEHGQVIQEFTQ
                     AELPSRMERLHEYLGV"
     gene            2629..>3383
                     /locus_tag="VF308_07345"
     CDS             2629..>3383
                     /locus_tag="VF308_07345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013236704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436503.1"
                     /translation="MKLKQLTAACTLALATMFGVATPAQAQISGDVIKIGIITDMSSL
                     YADIDGPAGVEAIKMAVADMGGAINGKKIEVLYADHQNKADVAAAKAREWFDTQGLDM
                     LIGGTNSGTALAMAKVAAEKKKLFIVVGAASSALTNEQCNAYTLHWAYDTVALAKGTG
                     NAVVKSGGKSWYFLTADYAFGAQLQNDTASVVKAAGGTVVGSVKHPLSASDFSSFLLQ
                     AQGSKAQILGLANAGGDTINSIKAANEFGVTKT"
BASE COUNT          565 a         1163 c         1127 g          528 t
ORIGIN      
        1 gatggccgct acgtgatcca gcgcaagctc ccggccgccc gctgaggcga aaatccggcg
       61 ccgccggcgc tgccgcgaat cgagggcaat tccggagggg agtaacccgc gagccagcgc
      121 ccgaaacgcg ttaccacgac caccagaccc ctagactctg cgtcccgctc gctgaagtgc
      181 gttcaacgtg ctgaacggcg acccctgcat gcagccccgc ctcgattccc gcttcgacac
      241 gattcgtgcc ttgccgtctg ctggcaaagg cccggcgacg ccgctcgtgc ccgctgtgtc
      301 gcgcgcgctt gccctgctcg agcggctcgc cggagcgcgt gagccgatga gcctggcgcg
      361 cctggccggc gagctggccc tgcccaagag cagcgtgcac ggcctgtgca acacgctggt
      421 ctcgttcggc tacctgcgtc ggcagtccga cggcgcgttc ctgatcgggc cccgcgtgat
      481 gggtctcgcc gaagccttcg tctcgggcac cgacgtcgcc caggaattca acgccctctg
      541 gaccgacagc ggcgcggagc cggacgaatc agtcgtgctc tcggtgctga gcggcggcga
      601 tgcgctctat gtcggcgtgc gcaacagtgc ccggccgctc ggcctcaagt tcaccgtcgg
      661 catgcgcctg ccggcctacc tctccggcag cggcaaggcg atgctttcgc tgctaccgcc
      721 cgacgaggtg cgccggctct acgccggcgg gctgcagacg cgcttgacga agaaggggcc
      781 gcgcgacgtc gaggcgctcc tcaaggaact ggcgttgacg cgccggcgcg gctacagcat
      841 cgacgaggaa gccgtgcgcg aaggcgtgtg ttcgatcggc gccccggtgt tcgacgcctc
      901 gggccttgcc gtcgcaggcg tggccgtctg cgtcaacaag gcgcttctcg gcgcgggccg
      961 cggcgagcgt taccgcctgc ttgccctcgc ggtggcgcgc tcgctgtcgg agcgcctcgg
     1021 cgctgatccg caacgcccgg ctcgggcggt gcggccgcgc gtgcgcagcg ccggagtcgc
     1081 cgcatgagtg ctgaattcat tctcgagacg cgcgagctca cgaaggagtt caaggggttc
     1141 gtcgcggtca gcaaggtcga cctgcgcgtg cgccgcggca ccatccacgc gctgatcggg
     1201 ccgaacggcg ccggcaagac cacctgcttc aacctgctga ccaagttcct gacgccgacc
     1261 tcgggccgga tcgtctacga cggcaccgac atcacgtctg agaagccagc gcacatcgcg
     1321 cgccgcggcg tcgtgcgctc gttccagatc tccgccgtct tcgggcacct gagcgtgctc
     1381 gagaacgtgc gcgtcgcgtt gcagaggaag ctcggcacgt cgtaccactt ctggaagccg
     1441 gagcgctcgc tcggtgtcct cgatgccgag gcaatggagt tgctgcatgc ggtcgatctg
     1501 gaggcctacg cggcgatccc cgcgatcgag ctgagctacg gccgcaagcg cgcgctcgag
     1561 atcgcgacga cgctcgcgat ggacccgaag ctgatgctgc tcgatgagcc gacccaaggc
     1621 atgggcctcg aagacgtgga ccggatcagg agcctcatca agcgcgtcgc ggcgaaccgc
     1681 acggtgctga tggtcgagca caacatgagc gtcgtcgcga gcatcgccga caccatcaca
     1741 gtgctgcagc gcggcgccac gctggccgaa ggcccctacg cggaggtctc gaagaacccg
     1801 gcggtggttg aggcctacat gggcagcgcc gatgccgaac tcgcgggcgc gcattgaccg
     1861 tggcgacctt tctcgaaatc accgatctgc acggctggta cggcgaatcg cacgtgctgc
     1921 acggcgtgaa cctccgggtc gaagagggcg aggtggtgac gctgctcggc cgcaacggcg
     1981 ccgggcgcac gagcaccttg cgtgcgatcc tgggcttgat cggcagccgc aagggctcga
     2041 tcaaagtgca tggacgcgag accgtcggca tggcgacgca tcgcatcgcc cgcctgggtc
     2101 tcggctattg ccccgaggag cgcggcatct tttccagcct ctcggccgag gagaacctga
     2161 tgctgccgcc gcgcctcgcc gccgagggtg gcatgagcgt cgagcagatc tacgcgatgt
     2221 ttccgaacct caaagagcgc gcggccagcc agggctcgcg gctttcgggc ggcgagcagc
     2281 aaatgctcgc cgtggcgcgc atcctgcgga ccggtgcgcg cctgctgctg ctcgacgaga
     2341 tctccgaggg cctcgcgccg gtgatcgtgc aaaagctcgg cgagatggtc ggctcgttgc
     2401 ggcgccaggg ctacacgatc gtgatggtcg agcagaactt ccgcttcgcg gcgccgctcg
     2461 ccgaccgctt catggtgatg gagcacggcc aggtgatcca ggagttcacg caggccgaac
     2521 tgccttcgcg gatggagcgg ctgcacgaat acctgggcgt gtaaggtcag gtccctcttc
     2581 tgtcgtattc acaagcattt ctctcaacct ttccctgtgg agaccatcat gaaactgaaa
     2641 caactcaccg ccgcctgcac cttggcactg gccacgatgt tcggcgtggc cacccccgcg
     2701 caagcccaga tctcgggcga cgtgatcaag attggcatca tcaccgacat gtccagcctg
     2761 tatgccgaca tcgacggtcc ggccggcgtc gaagcgatca agatggcggt ggccgacatg
     2821 ggcggcgcga tcaacggcaa gaagatcgag gtcctctacg ccgaccacca gaacaaggcc
     2881 gacgtcgccg ccgccaaggc ccgcgaatgg ttcgacaccc agggcctgga catgctgatc
     2941 ggcggcacca actcgggcac cgcgctggcc atggccaagg tcgcggccga gaagaagaag
     3001 ctgttcatcg tcgtcggcgc ggcctcctcg gcgctgacca acgaacagtg caacgcctac
     3061 acgctgcact gggcctacga caccgtggcg ctggccaagg gcaccggcaa cgcggtggtc
     3121 aagtccggcg gcaagagctg gtacttcctg accgccgact acgccttcgg cgcacagctg
     3181 cagaacgaca ccgcgtccgt ggtcaaggcc gccggcggca ccgtggtcgg ctcggtcaag
     3241 caccccttgt cggccagcga cttctcctcg ttcctgctcc aggcgcaggg cagcaaggcg
     3301 cagatcctgg gcttggccaa cgccggcggc gacaccatca actcgatcaa ggcggccaac
     3361 gaattcggcg tcaccaagac gat
//
LOCUS       DASVHM010000389         2551 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_100822, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000389 DASVHM010000000
VERSION     DASVHM010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2551
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100822"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..2007
                     /locus_tag="VF308_07350"
     CDS             133..2007
                     /locus_tag="VF308_07350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7436504.1"
                     /translation="MRRLAANAAAFPGRIAMREKDRGIWQQTGWGALLESTLACAAGL
                     EALGFTRGDALLVVGDNRPHLYTGMLAAGALAGYAMPVYPDAAPDEVAHAIGASRVRF
                     VLAEDQEQVDKILDLRERCPSVEHIVHDDGRGLAGYSDPGLVSWQALLERGAERLRRE
                     PTLRDGFLQRAQPDDPAVFIHSSGTTGRPKGVVLSHRNVLSGVASAHRAHAFDFFEEV
                     LAYLPMAWVGDFAMTVGAGIALAFTINIPERPETVLHDLREIAPTFYLAAPRSWDNML
                     TVVQVRMEDSTRMKKAIYGFFMGVALASERAKLEGRAPTRWQRLLRPLGELLVCGPIK
                     DQMGLSRLRFAFTGGEAIGEDTFVFYRALGVGLRQLYGQTESSAFNAMHDEGEVRLHT
                     VGRPLPGVEVRISESGEILIRSGSVFAGYWCNDEATRAALDEGWLHTGDAGYVEEAGG
                     HLVVLGRLAEVVHTAGGERYIPNYIENRLKFSPWIKDVAVLGSGRDTLAAIVCIDKEP
                     VGHWAEVRGISYVSYAELSQRPEVIELVAHAVARVNATLPEGLKLRHFVSLHKEFDAD
                     DGEITRTRKLRRNVVEERYAPIIDAIYGGQKSVAMKARIVYETGAVGITERVLAVREV
                     "
     gene            2013..>2551
                     /locus_tag="VF308_07355"
     CDS             2013..>2551
                     /locus_tag="VF308_07355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436505.1"
                     /translation="MELGYFLELGINGALAGLMYSLVAMGIVLIYKSSSVPNLAQGAL
                     TMVGAYVVLGFVQGAGLSMWLAIPLAMLTMCALGVAIERVALRRLAGRPIVMILMMTL
                     GLDIFLRAGTMAISGGTARPMRIGISDEPMFLGPLLLNRAYVVGAAVALFLFVCFVLF
                     FRTRRGAVLRAISDDYMAS"
BASE COUNT          367 a          882 c          882 g          420 t
ORIGIN      
        1 gcgagatgat cgacaccggc atgccgcgcg acgtcatcaa gaatccgcgc gtgatcaagg
       61 cttatctggg cggggccggt ggcgcggcct gaagctgccg gtgcgtggga tttctccagc
      121 gagaccacgc tggtgcgtcg cttggcggcc aatgcggccg ccttccccgg gcggatcgcg
      181 atgcgcgaga aggaccgtgg catctggcag cagaccggct ggggcgcgct gctcgaatcg
      241 acgctcgcct gcgccgccgg gctcgaagcg ctgggcttca cgcgcggcga cgcgctgctg
      301 gtggtcggcg acaaccggcc gcatctgtac accggcatgc tcgcggccgg cgcgctcgcc
      361 ggctacgcca tgcccgtcta ccccgacgcg gcgcccgacg aggtcgccca tgcgataggc
      421 gcctcgcggg ttcgcttcgt gctggccgag gatcaggaac aggtcgacaa gatcctggac
      481 ctgcgcgagc gctgcccgtc ggtcgagcac atcgtccacg acgacgggcg cggtctggcg
      541 ggctactccg accccggcct cgtctcctgg caggcgctgc tggagcgcgg cgccgaacgg
      601 ctgcgccgcg agccgacgtt gcgcgatgga tttctgcagc gtgcgcagcc cgacgacccg
      661 gcggtgttca tccactcgtc cggcaccacc ggccggccga agggcgtcgt cctcagccat
      721 cgcaacgtgc tgtccggcgt ggccagtgcg caccgcgctc acgccttcga cttcttcgag
      781 gaggtgctcg cctacctgcc gatggcctgg gtcggcgatt tcgcgatgac cgtcggcgcg
      841 ggcatcgcgc tcgccttcac gatcaacatt cccgagcggc cggagaccgt gctgcacgac
      901 ctgcgcgaga tcgcgccgac gttctacctg gccgcgccgc gcagctggga caacatgctg
      961 acggtcgtgc aggtgcggat ggaggactcg acgcgcatga agaaggccat ctacggcttc
     1021 ttcatgggcg tcgcgctcgc cagcgagcgc gccaagctcg agggccgcgc gccgacccga
     1081 tggcagcgcc tgctgcgccc gctcggcgag ctgctcgtct gcgggccgat caaggaccag
     1141 atggggcttt cacgcctgcg ctttgccttc accggcggcg aggcgatcgg cgaagacacc
     1201 tttgtcttct accgggccct gggcgtcggt ctgcgccagc tctacggcca gaccgagagc
     1261 agcgccttca acgcgatgca cgacgaaggc gaagtgcggc tgcataccgt gggccgaccg
     1321 ctcccgggcg tcgaggtgcg gatcagcgag tcgggtgaaa tcctgatccg ctcgggcagc
     1381 gtcttcgccg gctattggtg caacgacgaa gcgacgcgag ccgcgctcga cgaaggctgg
     1441 ctgcacaccg gcgatgccgg ctatgtcgag gaagccggcg gccaccttgt cgtcctcggc
     1501 cgccttgccg aagtggtgca caccgccggc ggcgaacgct acatcccgaa ctacatcgag
     1561 aaccggctca agttcagccc ctggatcaag gacgtcgcgg tgctcggcag cggccgcgac
     1621 acgctggccg ccatcgtttg catcgacaag gagccggtgg gccactgggc cgaggtgcgc
     1681 ggcatctcct atgtgtcgta cgccgagctt tcgcagcgcc ccgaggtgat cgagctcgtc
     1741 gcgcacgccg tggcgcgcgt caacgccacc ctgcccgagg ggctgaagct gcgccacttc
     1801 gtcagcctgc acaaggagtt cgacgccgac gacggcgaga tcacccgcac ccgcaagctc
     1861 cgccgcaacg tcgtcgagga gcgctacgca ccgatcatcg atgccatcta cggcggccag
     1921 aaaagcgtcg cgatgaaggc gcggatcgtc tacgagaccg gtgcggtcgg catcaccgag
     1981 cgggtgctcg cggtgcgcga ggtgtgacgg cgatggagct cggctacttc ctcgagctcg
     2041 gcatcaacgg cgcgctggcc gggctgatgt actcgctggt ggcgatgggc atcgtcctca
     2101 tctacaagtc gtcgtcggtg cccaatctcg cgcagggagc gctgacgatg gtcggcgcct
     2161 atgtcgtgct cggcttcgtg cagggtgccg ggctgtcgat gtggctggcg atcccgctgg
     2221 cgatgctgac gatgtgcgcg ctcggtgtgg cgatcgaacg cgtcgccctg cgccgcctcg
     2281 cggggcgtcc gatcgtgatg atcctgatga tgacgctcgg cctcgacatc ttcctgcgcg
     2341 ccggcacgat ggcgatcagc ggcggcaccg cccggccgat gcgcatcggc atcagcgacg
     2401 agccgatgtt cctcggcccg ctgctgctca accgcgccta cgtggtcggt gccgccgtcg
     2461 ccctgttcct gttcgtctgc ttcgtgctct tctttcgcac ccggcgcggc gccgtgctgc
     2521 gcgcgatctc cgacgactac atggcctcgt g
//
LOCUS       DASVHM010000390         1538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1181786, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000390 DASVHM010000000
VERSION     DASVHM010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1181786"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..114)
                     /locus_tag="VF308_07360"
     CDS             complement(<1..114)
                     /locus_tag="VF308_07360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012206130.1"
                     /note="part of multienzyme complex composed of H, L, P,
                     and T proteins which catalyzes oxidation of glycine to
                     yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a
                     reduced pyridine nucleotide; protein H is involved in
                     transfer of methylamine group from the P to T protein;
                     covalently bound to a lipoyl cofactor; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein H"
                     /protein_id="HEX7436506.1"
                     /translation="MTVMYTRDHEWIDAADPQAATVGITQHAQDALGDVVFV"
     gene            complement(167..1285)
                     /gene="gcvT"
                     /locus_tag="VF308_07365"
     CDS             complement(167..1285)
                     /gene="gcvT"
                     /locus_tag="VF308_07365"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HEX7436507.1"
                     /translation="MSATPLLKTPLHALHAELGAKMVPFAGYAMPVSYPAGIMAEHRQ
                     CRTSAALFDVSHMGQVRLAGAGAARALETLVPMDVADLPLAQQRYAFFTNANGGILDD
                     LMITRRENDLFLVVNAACKDADIRHLTTNIGDRCTVQLLDDRALLALQGPQAAAALAR
                     LASGIGALTFMTATQARLAGADCFVTRSGYTGEDGFEISVPAAQADALARALLALPEV
                     KPAGLGARDTLRLEAGLCLYGHDIDTTTTPIEAGLAWAIQKIRRPGGAREGHYPGAAV
                     IEAQLTGGAASKRVGLVGLERVPVREGAIVIDAGGRKLGHVTSGTIGPSVNRPIAMAY
                     LAANHAIAGHEVYAEVRGKRQPMRVSPMPFTPHRYFRG"
     regulatory      complement(1338..1447)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     regulatory      complement(1456..>1538)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
BASE COUNT          221 a          485 c          576 g          256 t
ORIGIN      
        1 gacgaacacg acgtcgccga gggcatcctg ggcgtgctgg gtgatgccga cggtggcggc
       61 ctgcgggtcc gcggcatcga tccattcgtg gtcgcgcgtg tacatgacag tcatcgaggt
      121 gctcctgggg tgggggatcg attcggttgt gaaggacggc gctggatcag ccgcggaaat
      181 agcggtgcgg cgtgaacggc atcgggctca cccgcatggg ttggcgcttg ccgcgcactt
      241 cggcatacac ctcgtgaccg gcgatcgcat ggttggcggc gaggtaggcc atcgcgatgg
      301 gccgattcac gctcgggccg atcgtgccgc tggtcacgtg gccgagtttg cggccgccgg
      361 catcgatcac gatcgcacct tcgcgcaccg gcacgcgttc gagcccgacg agcccgacac
      421 gcttgctggc agcgccgccg gtgagctggg cttcgatgac ggcagcgccc ggatagtggc
      481 cttcgcgcgc gccgccgggc cggcggatct tctggatcgc ccaggcgagg ccggcttcga
      541 tcggggtcgt ggtagtgtca atatcgtggc cgtagaggca aagtccggcc tcgaggcgca
      601 gcgtgtcgcg cgcaccgagg cccgcgggct tgacctcggg cagggcgagc agcgcgcgcg
      661 cgagtgcatc cgcctgcgcc gcgggcaccg agatctcgaa tccgtcttcg ccggtgtagc
      721 ccgagcgggt cacaaagcaa tcggcgccgg cgagacgggc ctgggtcgcc gtcatgaagg
      781 tcagggcgcc gatgccggag gccaggcgcg cgagtgccgc tgcggcctgc gggccctgca
      841 gcgcgagcag ggcgcggtcg tcgagcagtt gcacggtgca gcggtcgccg atgttcgttg
      901 tcagatggcg gatgtcggcg tccttgcagg ccgcattgac gacgaggaac aggtcgtttt
      961 cgcgtcgcgt gatcatcagg tcgtcgagga tgccgccatt ggcattggtg aagaaggcat
     1021 agcgctgctg ggccagcggc agatcggcga cgtccatcgg caccagggtc tcgagagcgc
     1081 gcgcggcgcc cgcgccggcc aggcgaacct ggcccatgtg cgagacgtcg aagagggccg
     1141 ccgaggttct gcactggcgg tgctcggcca tgatcccggc tggataggag accggcatgg
     1201 catagccggc gaagggcacc atcttcgcgc cgagttcggc gtggagcgcg tgcagaggcg
     1261 tcttcagcag gggggtcgcg gacatcgcac aggctccagg gctacgttcc aggcggcgcg
     1321 aaccggtcgc gccgaaacat gccctctctg tccgctttac ctgagagatt ggcgggcccg
     1381 ctcacgggtg gccgcttgcc ccttcggtgg acccgttttt aacgggcctc tctccagcga
     1441 ggaacgcctc gggtgaagcg cttgccagtc cttttgcctg agcgttcgac ccctcgtcgc
     1501 gacggggcct gcgccttcgg cggcttcacg cggaagct
//
LOCUS       DASVHM010000391         6330 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1038558, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000391 DASVHM010000000
VERSION     DASVHM010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6330
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1038558"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..473
                     /locus_tag="VF308_07370"
     CDS             <1..473
                     /locus_tag="VF308_07370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX7436508.1"
                     /translation="EEVFFPALREPRGLPRLRALFERWVRRVSVEIDSGCIYISGAVE
                     FDDRPGPVRDALVTMVRTWQLALERAIHAAVAEGHLRPDTDAQQVLFELHGLILALHH
                     DARFLQNPGVAGRARAAFDRLMGHFATPAASVKAGRAPRARRKPRSAASPSSSV"
     gene            499..2289
                     /locus_tag="VF308_07375"
     CDS             499..2289
                     /locus_tag="VF308_07375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HEX7436509.1"
                     /translation="MAHYTPPLRDMQFVLHEVLNVVDELKALPRHADIDADTINAVLE
                     EAGKFASQVLAPLNQSGDIEGCRLDLATHEVKAPNGFKEAYAQYVEGGWPALSADPNF
                     GGQGLPLIVNQCLFEMLNSSNQAWTMYTGLSHGAYEALREHGSDEQKALYLPKLTSGK
                     WTGTMCLTEPQCGTDLGLLRTKAEPQADGTYRLTGEKIFISAGDHDLAENIIHLVLAR
                     LPEAPTGSKGISLFVVPKFIANADGSLGARNGIYCAGLENKMGIHGNATAQMVLDGAV
                     GTLVGQPNKGLAAMFVMMNAARLGVGMQGLGLTEVAYQNAAIYAKDRLQMRSLSGVKA
                     ADKPADPIIVHPDVRKMLLTARAYAEGGRALAMWTTLQIDKELSTDDEEVRRECADLV
                     ALVTPIVKAFLTDNAWISTSACMQVFGGHGYIRESGMEQFVRDSRINMIYEGTNTIQS
                     LDLLGRKVLGDNGAKLKKFGKLVTQFIEDEGTNEALQEFVNPLADLGDKVTKLTTEIG
                     MKAFQNADEVGAAAVDYLRVCGHLVFAYFWARMAKVALEKADSGDSFYKAKLVTARFY
                     FAKLLPETAMLIRTARAGAKPMMDMEEALF"
     gene            2330..2785
                     /locus_tag="VF308_07380"
     CDS             2330..2785
                     /locus_tag="VF308_07380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HEX7436510.1"
                     /translation="MSRKPYLFAFILGLTLLAGLARAQNTPVGVWKTIDDETRKEKSL
                     IRVTEAGGVLTGTLEKLLDPATKQDAVCEKCTDERKDKPLLGMTLIRNVKQSDRDKDL
                     WDGGDILDPNNGKVYKVRLKPVDGGARLDVRGYIGAPLLGRTQTWIRAE"
     gene            2818..5214
                     /locus_tag="VF308_07385"
     CDS             2818..5214
                     /locus_tag="VF308_07385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA
                     hydratase family protein"
                     /protein_id="HEX7436511.1"
                     /translation="MNRFNVRKVAVLGAGVMGAQIAAHLVNLKVPVVLFDLPAKEGPK
                     NGIVSRAVDGLKKLKPAPLGIAEDAALIQQANYEDDLDQLRGCDLIIEAIAERMDWKL
                     DLYKRIAPAIAPHAIVASNTSGLSITKLAEVLPAEIRPRFCGIHFFNPPRYMALVELI
                     ATPDTRPEILDQLEAFVTTALGKSVVRAKDTPNFIANRVGIAGMLATIKEAENFGLSY
                     DVVDDLTGKKMGRASSGTFRTADVVGLDTMAHVIKTLQDNLADDPFYPTFATPPVLAR
                     LIEQGALGQKSGAGFYKKVGKDILRLDPQKGDYVAGGGKADEIVARILKKPPAERLKL
                     LRESKNPQAQFIWAILRDSFHYAAVHLAAIADSARDVDFAMRWGFGVSQGPFELWQAA
                     GWGQVAQWVQEDIDAGKALSNAPLPAWVFEGPVASNQGVHRPDGSWSPAQARWVLRST
                     LPVYARQLFAESVFGADAPAPLKAGTEEYRNDEVRVWSQDSEVLIASITAKLHLISPS
                     VTEGLLKALDIAEARYKGLVIWSPDDVFSAGANLEALMPVFMKSGAKGIEPEIKKLQD
                     MMLRMRYAAVPVVSALRGIALGGGCEIALYSSRRVAAMESYMGLVEVGVGLIPAGGGL
                     AYIARRAAEMAAAANANADILAFLRDGFTNAAMAKVGTSAIESRKCGYLLWSDAVVAN
                     KDELLFVASAQARAMFESGWRAPARVSFPVAGRSAIATIKAQLANMRDGGFISKHDFH
                     ISALIADVVCGGDVDAGTLASEEYLMALERKHFCALLEHPKSQERIMGMLQTGKPVRN
                     "
     gene            5229..>6330
                     /locus_tag="VF308_07390"
     CDS             5229..>6330
                     /locus_tag="VF308_07390"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011802842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEX7436512.1"
                     /translation="MSKQVQEAYVVAATRTPIGKSGRGYFRATRSDDLLVLAIQSALR
                     QVPTLDPKAIEDAVIGCSFPEAEQGMNMARIAVALAGLPHSVGGITVNRFCASGLSAI
                     QMAADRIRVGEAEVMIAGGAESMSLVPMGGNKPSFNPRVFASDENVGIAYGMGLTAEK
                     VAAQWKVSREAQDEFALQSHLRALKAQQAGEFSDEMTPVEIVERFPDLARGEPGMRTR
                     TVTLDEGPRPDTSLEGLAKLRPVFAAKGSVTAGNSSQTSDGAGALILASEKAVKQFNL
                     KPLARFVSFASRGVAPEIMGIGPIEAIPAALRYAGLTLDDIGWIELNEAFAAQSLAVI
                     ETVGLDPSKVNPMGGNKPSFNPRVFASDENVGI"
BASE COUNT         1133 a         2117 c         2119 g          961 t
ORIGIN      
        1 aggaagaagt cttttttccg gccctgcgcg aaccgcgcgg cctgccgcgc ctgcgggccc
       61 ttttcgaacg ctgggtccgg cgcgtgtcag tcgagatcga ctcgggttgc atctacatca
      121 gcggcgcggt cgagttcgac gaccgcccgg gaccggttcg cgacgctctc gtgacgatgg
      181 tgcgcacctg gcagctggcg ctcgagcgcg cgatccatgc tgcggtcgcc gaaggccatc
      241 tgcgccccga caccgatgcg cagcaggtgc tgttcgagct gcacgggctc atcctcgcgc
      301 tccaccacga tgcgcgcttc ctgcagaatc ccggcgtcgc gggtcgagcc cgggccgcgt
      361 tcgatcgcct catggggcat ttcgccacgc cggcggcgag cgtcaaggcc ggccgcgcgc
      421 cgcgcgcccg tcgcaagccc cggtccgcag cttccccttc ttcttcggtt tgagcccacc
      481 cctcaggagt cccgtttcat ggcccactac accccgccgc tgcgcgacat gcagttcgtc
      541 ctgcacgaag tgctcaacgt cgtcgatgaa ttgaaggcgc tgccccgcca tgcggacatc
      601 gacgccgaca caatcaacgc ggtgctcgaa gaggcgggca agttcgcgag ccaggtgctc
      661 gcgccgctca atcagagcgg cgacatcgaa ggctgcaggc tcgacctcgc gacgcacgag
      721 gtcaaggcgc cgaacggttt caaggaagcg tacgcgcagt acgtcgaggg cggctggccg
      781 gcgctcagcg ccgaccccaa ttttggtggc cagggcctgc cgctcatcgt gaaccagtgc
      841 ctgttcgaga tgctcaattc gtcgaaccag gcctggacca tgtacacggg cctttcgcat
      901 ggcgcctacg aggcgctgcg cgaacacgga tcggacgaac agaaggcgct ttacctgccc
      961 aagctcacca gcggcaaatg gaccggcacg atgtgcctga ccgaaccgca gtgcggcacc
     1021 gacctcggcc ttctgcgcac caaggccgag ccgcaagccg acggcacgta ccggctgacc
     1081 ggcgagaaga tcttcatttc ggcgggcgac cacgacctcg ccgagaacat catccacctc
     1141 gtgctggccc ggttgcccga ggcgccgacc ggctcgaagg gcatttcgct tttcgtggtg
     1201 ccgaaattca ttgcgaatgc cgacggcagc ctcggcgccc gcaacggcat ctactgcgct
     1261 gggctcgaaa acaagatggg catccacggc aacgcgaccg cgcagatggt gctcgacggc
     1321 gccgtgggca cgctggtcgg ccagccgaac aaggggctgg cggcgatgtt cgtgatgatg
     1381 aacgcggcgc gcctgggggt cggcatgcag ggcctcggtc tgaccgaagt cgcctaccag
     1441 aacgccgcga tctacgcgaa ggaccggctg cagatgcgct cgctttccgg cgtgaaggcg
     1501 gccgacaagc cggccgaccc gatcatcgtc catcccgacg tgcgcaagat gctgctgacg
     1561 gcccgtgcct acgccgaggg cggtcgggcc ctggcgatgt ggaccacgct gcagatcgac
     1621 aaggagctct cgaccgacga cgaggaggtg cggcgcgaat gcgccgacct cgtcgcgctg
     1681 gtcacgccga tcgtcaaggc cttcctgacc gacaacgcct ggatctccac ctcggcctgc
     1741 atgcaggtct tcggcggtca cggctacatc cgcgaatcgg ggatggagca gttcgtgcgc
     1801 gactcgcgca tcaacatgat ctacgagggc acgaacacga tccagtcgct cgacctgctc
     1861 ggccgcaagg tgctcggcga caacggcgcg aagctgaaga agttcggcaa gctggtgacc
     1921 cagttcatcg aggacgaggg cacgaacgaa gcgctgcagg agttcgtgaa tccgctcgcc
     1981 gacctcggcg acaaggtcac caagctcacc accgagatcg gcatgaaggc gttccagaat
     2041 gccgacgagg tcggcgccgc ggcggtcgac tacctgcgcg tctgcggcca cctcgtcttc
     2101 gcctatttct gggcccgcat ggccaaggtg gcgctcgaga aggcggacag cggcgactcg
     2161 ttctacaaag ccaagctggt caccgcgcgc ttctacttcg ccaagctcct gcccgagacg
     2221 gcgatgctga tccgcaccgc gcgcgccggc gccaagccga tgatggacat ggaggaagcg
     2281 ctgttctgaa gcgttccgtc accccttctt caaacacgga gacccaccca tgagccgcaa
     2341 gccatacctc ttcgccttca tcctcggcct cacgcttctg gcggggctgg cccgtgcgca
     2401 gaacaccccg gtcggcgtct ggaagacgat cgacgacgag accaggaagg agaagtcgct
     2461 gatccgcgtg accgaagcgg gcggcgtcct gaccggcacg ctcgagaaac tactcgatcc
     2521 ggcgaccaag caagatgcgg tctgcgagaa gtgcactgac gagcgcaagg acaagccgct
     2581 tctcggcatg accttgatcc gcaacgtgaa gcagagcgac cgcgacaagg acctctggga
     2641 cggcggtgac atcctcgacc ccaacaacgg caaggtctac aaggtgcgcc tgaagccggt
     2701 cgacggcggc gccaggctcg acgtgcgcgg ctacatcggc gcgcccttgc tcggccgcac
     2761 ccagacctgg atccgcgccg agtgacggcg cagcaccgac atcgaaggac cgctgaaatg
     2821 aaccgattca atgtgcgcaa agtggccgtg ctcggcgccg gcgtgatggg ggcgcaaatc
     2881 gccgcccatc tcgtcaacct caaggtgccg gtcgtgctgt tcgatctgcc ggcgaaggag
     2941 ggcccgaaga acggcatcgt gtccagagcc gtcgatgggt tgaagaagct gaagccggcg
     3001 cccttgggga tcgccgagga tgccgcgctg atccagcagg ccaactacga ggacgacctc
     3061 gaccaactgc gcggctgcga tctgatcatc gaggcgatcg ccgagcgcat ggactggaag
     3121 ctcgatctgt acaagcggat cgctccagcc atcgcgccgc acgcgatcgt cgcgagcaac
     3181 acttcgggcc tgtcgatcac gaagctcgcc gaagtgctgc cggccgagat caggccgcgc
     3241 ttttgcggca tccacttctt caacccgccg cgctacatgg cgctggtcga gctgatcgcg
     3301 acgcccgaca cccggcccga gatcctcgac cagctcgagg ccttcgtcac caccgcgctc
     3361 ggcaagtcgg tcgtgcgcgc gaaggacacg ccgaacttca tcgccaaccg cgtcggcatc
     3421 gccggcatgc tggcgacgat caaggaagcc gagaacttcg gcctgtctta cgacgtcgtc
     3481 gacgacctca ccggcaagaa gatggggcgc gcgagctccg gcacgtttcg caccgccgac
     3541 gtggtcgggc tcgacaccat ggcgcacgtc atcaagacct tgcaggacaa cctcgccgac
     3601 gacccgttct atccgacttt cgcgacgccg ccggtgctcg ccagactcat cgaacagggc
     3661 gcgctcggcc agaagagcgg agcgggcttc tacaagaagg tcggcaagga catcctgcgc
     3721 ctcgatccgc agaagggcga ctacgttgcc ggcggcggca aggccgacga gatcgtcgcg
     3781 cgcatcctca agaagccgcc ggccgaacgc ctgaagctgc tgcgcgaatc gaagaatccg
     3841 caggcccagt tcatctgggc gatcctgcgc gacagcttcc actatgccgc cgtgcacctc
     3901 gccgccatcg ccgacagcgc gcgcgacgtc gacttcgcga tgcgctgggg cttcggcgtg
     3961 agccaggggc cgttcgaact ctggcaggcc gcgggctggg gtcaggtcgc gcagtgggtc
     4021 caggaagaca tcgatgcggg caaggcgctg agcaatgcgc cgctgccggc ctgggtgttc
     4081 gaaggcccgg tcgcgagcaa ccagggcgtg caccggcccg acggctcatg gagccccgcg
     4141 caggcgcgct gggtgctgcg cagcaccttg cccgtgtacg cgcgccagct ctttgcggaa
     4201 agcgtgttcg gcgccgacgc gcccgcgccg ctcaaggcgg gcaccgagga atatcgcaac
     4261 gacgaagtgc gcgtctggag ccaggacagc gaggtgctga tcgcgagcat cacggccaag
     4321 ctgcacctga tcagcccgag cgtgaccgaa ggcctgctga aggcgctcga catcgccgaa
     4381 gccaggtaca agggcctcgt gatctggtcg cccgacgacg tgttctcggc cggcgccaat
     4441 ctcgaagcat tgatgccggt gttcatgaaa tcgggcgcca agggcatcga gcccgagatc
     4501 aagaagctgc aggacatgat gctgcggatg cgctatgcgg cggtgccggt ggtgtcggcg
     4561 ctgcgcggca tcgcgttggg cggcggttgc gagatcgcgc tctactcgtc gcgccgcgtg
     4621 gcggcgatgg aaagctacat ggggctcgtc gaagtgggcg tcggcttgat cccggccggc
     4681 ggcgggctcg cgtacatcgc gcgccgcgcc gctgaaatgg cagcggcggc gaacgccaat
     4741 gccgacatcc tggcgttcct gcgcgacggc ttcaccaatg cggcgatggc caaggtgggt
     4801 accagcgcca tcgagagtcg caaatgcggc tacctgctct ggagcgacgc ggtcgtggcg
     4861 aacaaggacg agttgctctt cgtcgcgagc gcccaggcca gggcgatgtt cgagagcggc
     4921 tggcgcgcgc cggcgcgggt ctccttcccg gtggccggcc ggtcggcgat cgcgacgatc
     4981 aaggctcagc tcgcgaacat gcgcgacggc ggcttcatca gcaagcacga tttccacatc
     5041 tcggcgctga tcgccgacgt cgtctgcggc ggcgatgtgg atgccggaac gctcgccagc
     5101 gaggaatacc tgatggcgct cgagcgcaag catttctgtg ccttgctcga gcacccgaag
     5161 tcgcaggaac ggatcatggg catgctccag accggcaagc cggtccggaa ctgagagaag
     5221 gcatcgaaat gagcaagcaa gttcaagagg cgtatgtcgt tgccgcgacg cgcaccccga
     5281 tcggcaagtc cggccggggc tatttcaggg ccacccggtc cgacgatctg ctggtcctcg
     5341 cgatccagag cgcgctgcgg caggtgccga cgctcgaccc gaaggcgatc gaagatgccg
     5401 tcatcggctg ctcgttcccc gaggccgagc agggcatgaa catggcgcgg atcgcggtgg
     5461 cgctcgccgg cctgccgcat tcggtcggcg gcatcaccgt caaccggttc tgtgcctccg
     5521 gcctttcggc gatccagatg gcggccgatc gcatccgcgt cggcgaggcc gaggtgatga
     5581 tcgccggcgg cgccgagtcg atgagcctgg tgccgatggg cggcaacaag ccgtctttca
     5641 acccgcgcgt gttcgcgagc gacgagaacg tgggcatcgc ctacggcatg ggcctcaccg
     5701 ccgagaaggt ggccgcgcag tggaaggtat cgcgcgaggc gcaggacgag ttcgcgctgc
     5761 agtcgcacct gcgggccctg aaagcgcagc aggcgggcga gttcagcgac gagatgactc
     5821 cggtcgagat cgtcgagcgc tttcccgatc tggctcgcgg cgagcccggc atgcgcacgc
     5881 gcaccgtcac gctcgacgag ggcccgcgcc ccgacacctc gctcgaaggc ctggccaagc
     5941 tgcggccggt gttcgcggcc aagggctccg tgaccgcggg caacagctcg cagaccagcg
     6001 acggcgccgg tgcgctgatc ctcgcgagcg agaaggcggt gaagcagttc aacctgaagc
     6061 cgctcgcgcg cttcgtcagt ttcgcgagcc gcggcgtggc gccggagatc atgggcatcg
     6121 gcccgatcga ggcgattccg gcggcgctgc gctacgccgg gctgacgctc gacgacatcg
     6181 gctggatcga gctcaacgaa gcattcgcgg cgcagtcgct ggccgtcatc gagacggtcg
     6241 gcctcgaccc gagcaaggtc aacccgatgg gcggcaacaa gccgtctttc aacccgcgcg
     6301 tgttcgcgag cgacgagaac gtgggcatcg
//
LOCUS       DASVHM010000392         2112 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_245056, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000392 DASVHM010000000
VERSION     DASVHM010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2112
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245056"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..617
                     /locus_tag="VF308_07395"
     CDS             <1..617
                     /locus_tag="VF308_07395"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HEX7436513.1"
                     /translation="VPAYSTLGVLPFDWLADPLLSTFIDYPEGELARLVFHELAHQIA
                     YAKGDTVFNESFATAVERIGGERWLGTRASAAAREAYARFDGRRQDFRALIARYRAEL
                     DALYRGSAPDTEKRARKAALFAALRADYATLQAERWGGFSGYDAWFARANNASLGVLA
                     AYNELVPAFLRLFEREGGDFGRFYAEVGRLAMLDPAARRAALER"
     gene            650..985
                     /locus_tag="VF308_07400"
     CDS             650..985
                     /locus_tag="VF308_07400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007862548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoic acid system family protein"
                     /protein_id="HEX7436514.1"
                     /translation="MADIRIHRSHQLGLPKARKVAWQWAEAVEKRFDMECTVIQGQGG
                     DTVEFTRPGVTGRLLVGADHFDLEARLGFLLGAFSKRIETEIEQNLDALLASSAKAQA
                     RKAVAKKKA"
     gene            complement(1008..1262)
                     /locus_tag="VF308_07405"
     CDS             complement(1008..1262)
                     /locus_tag="VF308_07405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000062 - fatty-acyl-CoA binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA-binding protein"
                     /protein_id="HEX7436515.1"
                     /translation="MADLKSRFEQAIADSKKLAEKPDNMTLLKLYALFKQASSGDADG
                     KRPGFGDMVGRAKWDAWNAVKGKSADEAMQEYVDLVESLK"
     gene            1343..>2112
                     /locus_tag="VF308_07410"
     CDS             1343..>2112
                     /locus_tag="VF308_07410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004144 - diacylglycerol O-acyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0045017 - glycerolipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="wax ester/triacylglycerol synthase
                     domain-containing protein"
                     /protein_id="HEX7436516.1"
                     /translation="MNPDPIPPPDPERMSRVDTAWLRMDNDVNLMMIVGIWLLRPAIA
                     YEALCARVEEKLLQYERFRQKVVQDATGASWVHDPAFDIHRHVVRERLRRTPGESERA
                     ALQRRAGELANTPLSSDHPLWQFHLIEGYEGGSALMVRVHHCIGDGIALISVMLSITD
                     GGADPPKRTRRAAAGEDGEWLADLSAKALAVYDASLARSMEMLSDPQQGLLGSLDKAR
                     SAYRVLGDVAAMALMPDDSPTLLKGKPGGHKVVAWSEPL"
BASE COUNT          334 a          712 c          715 g          351 t
ORIGIN      
        1 gcgtgccggc gtattcgacc ctcggtgtgc tgcctttcga ctggcttgcc gacccgctgc
       61 tgagcacctt catcgactat cccgaaggcg agttggcgcg cctcgtcttc cacgaactcg
      121 cccaccagat cgcctatgcg aagggcgaca cggttttcaa cgaatcgttc gcgaccgcgg
      181 tcgagcgcat cggcggcgaa cgctggctcg gcacacgggc gagcgcggcg gcgcgcgaag
      241 cctacgcacg cttcgacggc cggcgccagg actttcgcgc gctgatcgcg aggtaccgcg
      301 ccgagctcga tgcgctgtat cgcggcagcg cccccgacac cgagaagcgt gcccgcaagg
      361 cggcactctt cgccgcgttg cgggccgact acgcgacgct gcaggccgag cgctggggcg
      421 ggttttccgg gtacgacgcc tggttcgccc gggccaacaa tgcgtcgttg ggtgtgctcg
      481 ccgcctacaa cgaactcgtg ccggcgttcc tgcggctgtt cgagcgggag ggcggcgatt
      541 tcggccgttt ctatgccgag gtcgggcgtc tcgcgatgct cgatcccgcc gcgcgccggg
      601 ccgcgctcga acgctagggt cgaactcgca tgatcagaaa ggaatggccg tggccgacat
      661 ccgcattcac cgctcgcatc agctcggctt gccgaaggca cgcaaggttg cctggcaatg
      721 ggccgaagct gtcgagaagc gcttcgacat ggaatgcacg gtgatccagg gacagggcgg
      781 cgatacggtg gagttcaccc gcccgggggt gaccgggcgc ctcttggtcg gcgcagacca
      841 cttcgacctc gaggcccggc tcggcttcct gctcggtgcg ttcagcaagc gcatcgagac
      901 cgagatcgaa cagaacctcg atgcgttgct ggcttcgagc gcgaaggcgc aggcgcgcaa
      961 ggcggtcgcg aagaagaagg cctaggcgcc gcggcggcgg ccgcggatca cttcagcgac
     1021 tcgaccaggt cgacgtactc ctgcatcgcc tcgtcggcgc tcttgccctt gaccgcgttc
     1081 caggcgtccc acttggcgcg gccgaccatg tcgccgaagc cgggacgctt gccgtcggcg
     1141 tcgccgctgc tggcctgctt gaagagcgca tagagcttca gcaaggtcat gttgtcgggt
     1201 ttttcggcga gcttcttcga gtcggcgatc gcctgctcga aacgcgattt cagatcggcc
     1261 atgcaaggtc tccgtgagtg aaagtcggca ttgacggcgc tgatgttacc caccatcttg
     1321 ggggcgcctt cacgccaacg ccatgaatcc tgacccgatc ccgccacccg acccggagcg
     1381 catgtcccgc gtggacaccg catggctgcg gatggacaac gacgtgaacc tgatgatgat
     1441 cgtcggcatc tggctcttgc ggccggccat cgcgtacgag gcgctgtgcg cgcgcgtcga
     1501 ggaaaagctt cttcaatacg agcgcttccg gcagaaggtg gtccaggatg cgaccggcgc
     1561 gagctgggtc cacgacccgg cgttcgacat ccaccggcat gtcgtgcgcg agcgtctgcg
     1621 gcgcacgccg ggggagagcg agcgcgcggc gctgcagcgc cgcgccgggg aactggccaa
     1681 tacgcctctt tcgtccgatc acccgctctg gcagttccat ctgatcgaag gctacgaagg
     1741 tggcagcgcg ctcatggtcc gtgtgcacca ctgcatcggc gacggcatcg cgctgatctc
     1801 ggtcatgctg agcatcaccg acggcggcgc cgacccgccg aagcgcacgc gccgcgccgc
     1861 ggccggcgag gatggcgaat ggctcgccga tctgtccgcc aaagcgctcg ccgtctacga
     1921 cgcgagcctg gccaggtcga tggagatgct ctccgatccg cagcagggcc tgctcggctc
     1981 gctcgacaag gcgcgcagcg cctaccgcgt gctcggcgac gtcgcggcga tggctctgat
     2041 gcccgacgat tcgccgacgc tgctcaaagg caagcccggc ggccacaagg tcgtcgcctg
     2101 gagcgagccg ct
//
LOCUS       DASVHM010000393         1651 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_245154, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000393 DASVHM010000000
VERSION     DASVHM010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245154"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..467)
                     /locus_tag="VF308_07415"
     CDS             complement(<1..467)
                     /locus_tag="VF308_07415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010106051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HEX7436517.1"
                     /translation="MPNVRLIARLDIKGPNLIKGVHLEGLRVIGDPQEYARSYYEQGA
                     DELVYIDIVASLYGRSKLTEIVRRAAHDVFVPMTVGGGIRSIDDVGDLLRAGADKVAI
                     NTAAVRRPELIDEVSRRFGSQAMVLSIEAKQQAPGRWEVYTDCGRERSGVDAV"
     gene            complement(469..>1651)
                     /locus_tag="VF308_07420"
     CDS             complement(469..>1651)
                     /locus_tag="VF308_07420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010106025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HEX7436518.1"
                     /translation="SAVEYEHTADSKKKTINFDAEGICDACRMAEQKLGTIDWPERER
                     DLRELCDRHRRNDGSYDCVVPGSGGKDSFYAAHMLKYKYGMHPLTVTWAPHIYTEWGW
                     RNFEAWLHAGFDNFLCTPNGRVHRLVTRLAVENLFHPFQPFIFGQKALAPKMALLHKI
                     PLVFYGENEAEYGNPIADTQSAKRDWSYFTSDDKSKIYLGGTSIAALQEDFGVDAHEL
                     QPYLPPNPAEIERRKVEVHYLGYYLKWHPQSCYYYAVEHGGFQASPERTPGTYSKYNS
                     IDDRIDDFHYHTTFTKFGIGRATYDAAQEIRSGDITRDEGVALAKRFDGEFPDRFAEE
                     IFRYLSIPAKEFPKATRMFEQPVIDRAYYDNLADSFRSPHLWRYDDGKWQLRHAVWDE
                     Q"
BASE COUNT          242 a          521 c          577 g          311 t
ORIGIN      
        1 tcgacggcgt cgacgccgct gcgctcgcgg ccgcagtcgg tgtagacctc ccagcggccc
       61 ggcgcctgct gcttggcctc gatcgacagc accatcgcct gcgagccgaa gcggcgcgag
      121 acctcgtcga tcagctcggg ccggcgcacc gcggcggtgt tgatcgcgac cttgtcggcg
      181 ccggcgcgaa gcagatcgcc gacatcgtcg atgctccgga tgccgccgcc gaccgtcatc
      241 ggcacgaaca cgtcatgggc ggcgcggcgc acgatctcgg tcagcttgct gcgaccgtac
      301 aggctggcga cgatgtcgat gtagacgagc tcgtcggcgc cttgctcgta gtagctgcgc
      361 gcgtactcct gcgggtcgcc gatgacgcgc aacccctcga ggtggacgcc cttgatcagg
      421 ttcggcccct tgatgtcgag gcgggcgatg aggcggacgt tcggcacgct actgctcgtc
      481 ccagacggca tggcgcagct gccacttgcc gtcgtcgtag cgccacaggt gcggcgagcg
      541 gaacgagtcg gccaggttgt cgtagtaggc gcgatcgatg accggctgct cgaacatccg
      601 cgtcgccttc gggaattcct tcgccgggat gctcaggtac ctgaagatct cctcggcgaa
      661 gcgatcgggg aactcgccgt cgaaccgctt cgccagcgcg acgccttcgt cgcgcgtgat
      721 gtcgccggaa cggatctcct gcgccgcgtc ataggtggca cggccgatgc cgaacttcgt
      781 gaaggtcgtg tggtagtgga agtcgtcgat gcggtcgtcg atgctgttgt acttgctgta
      841 ggtgcccggc gtgcgctcgg gggaggcttg gaagccgccg tgctcgaccg cgtagtagta
      901 gcagctctgc ggatgccact tcaggtagta gccgaggtag tggacctcga ccttccggcg
      961 ctcgatctcg gccgggttcg gtggcaggta gggctgcagc tcgtgcgcgt cgacgccgaa
     1021 gtcttcctgg agcgcggcga tcgaggtgcc gccgaggtag atcttcgact tgtcgtcgga
     1081 ggtgaagtac gaccagtcgc gcttcgcgga ctgggtgtcg gcgatcgggt tgccgtactc
     1141 ggcctcgttc tcgccgtaga agacgagcgg gatcttgtgt agcaacgcca tcttcggcgc
     1201 gagcgccttc tggccgaaga tgaacggctg gaacgggtgg aagaggttct cgaccgcgag
     1261 ccgggtcacc agccggtgca cgcgaccgtt cggcgtgcac aggaagttgt cgaagccggc
     1321 gtgcagccag gcctcgaaat tgcgccagcc ccactcggtg tagatgtgcg gcgcccacgt
     1381 caccgtgagc gggtgcatgc cgtacttgta cttgagcatg tgcgcggcgt agaagctgtc
     1441 cttgccgccc gagcccggca ccacgcagtc gtaagagccg tcgttcctgc ggtggcgatc
     1501 gcacagctcg cgcaagtcgc gctcgcgctc gggccagtcg atcgtgccga gcttctgctc
     1561 tgccatccgg caggcgtcgc agatgccctc ggcatcgaag ttgatcgtct tcttcttgct
     1621 gtcggcggtg tgctcgtact cgacggccga g
//
LOCUS       DASVHM010000394         2150 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_390149, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000394 DASVHM010000000
VERSION     DASVHM010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390149"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..509)
                     /locus_tag="VF308_07425"
     CDS             complement(<1..509)
                     /locus_tag="VF308_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008448293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEX7436519.1"
                     /translation="MSWSAVDFAILAPAFLAGILVLATHVPLGAQVLKKGIVFIDLAI
                     AQIAALGVVVAGLLDLAPSGWQVQAAAALAALAGAVLLDWTEKKWPQVQEAQIGVVFV
                     LAATAGILLLSKNPHGGEHLRDLLAGQILWVGYAQLAIPLVATVAILALWFGMQSRLS
                     QLGFYLVFAL"
     gene            complement(506..1438)
                     /locus_tag="VF308_07430"
     CDS             complement(506..1438)
                     /locus_tag="VF308_07430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020703332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEX7436520.1"
                     /translation="MKLLAFPRQFRMPARAFAVACVAACSLQAHAALNVVACEPEWAA
                     LAKEIGGDKVNVSSATNAAQDPHHIEARPSLIARMRSADLIACTGMELEIGWLPVLIQ
                     QSGNARLAPGAPANFEAGRFVTPLEVPTRLDRSEGDVHAQGNPHIQLDPRNIAKVGAA
                     LAARLALIDPANAKTYQDRLQSFQARWSESIRKWELLAQPLKGVVVVAHHKNMAYLWD
                     WLGLREVGTLEPKPGVEPSAGHLSGLNAQLARQPAKLVVRAAYEDPRASQWLADHAHI
                     PAVALPFTVGGNDKATDLFGLFDSTVALLLDGAK"
     gene            complement(1448..>2150)
                     /locus_tag="VF308_07435"
     CDS             complement(1448..>2150)
                     /locus_tag="VF308_07435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020703333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436521.1"
                     /translation="ELGAELGAGRGFPGSESHRNGIGSSALFAHLGDDIGESASWRTG
                     VSVVSNRASDRAYADVDAVGAPVNNRFSGSTRTWILDGIYKWSPAGNATRTNFKLQGE
                     YFRRTESGTLTQATGIGGGNSGDYRATQSGWYLQAVYQFVPQWRAGVRYDRLDSGSPD
                     IGLVTAGTLSAADFPILQSARPSRATVMVDYSLSEFSRFRLQLAADRSNPAATDRQLF
                     LQYIMSLGAHGAHTF"
BASE COUNT          337 a          717 c          765 g          331 t
ORIGIN      
        1 agcgcgaaca cgaggtagaa gccgagctgc gacaagcgac tctgcatgcc gaaccagagc
       61 gccaggatcg cgacggtggc gacgagcgga atcgcgagct gcgcatagcc gacccagagg
      121 atctgcccgg cgagcaggtc gcgcaggtgt tcgccgccat gtggattctt cgacagcagc
      181 aggatgccgg ccgtcgccgc gagcacgaag acgacgccga tctgcgcctc ctggacctgc
      241 ggccacttct tctcggtcca gtcgagcagc accgccccgg ccagcgccgc cagcgcggcg
      301 gcggcctgca cctgccagcc gctcggcgcc aggtcgagca ggccggcgac gacgacgccg
      361 agcgcggcga tctgcgcgat cgcgaggtcg atgaagacga tgcccttctt cagcacctgg
      421 gcgccgagcg gcacgtgcgt cgcgaggacg aggatgccgg cgagaaatgc cggagcgagg
      481 atcgcgaaat cgacggcgct ccagctcatt tggcaccgtc cagcaatagt gcgacggtgc
      541 tgtcgaagag gccgaagaga tcggtcgcct tgtcgttgcc gccgaccgtg aacggcaggg
      601 cgaccgcagg gatgtgcgcg tggtcggcca gccactgcga ggcgcgcgga tcttcgtaag
      661 cggcgcggac caccagcttg gccggctggc gcgcgagttg tgcgttcagc ccgctcaggt
      721 ggccggcgct cggctcgact cccggcttgg gctcgagcgt gccgacctcg cgcaggccga
      781 gccagtccca caggtaggcc atgttcttgt gatgcgcgac gaccacgacg cccttgagcg
      841 gctgcgccag cagctcccat ttgcggatgc tctcgctcca gcgcgcctgg aatgattgca
      901 gccgatcctg gtaggtcttc gcattcgccg ggtcgatcag cgcaagccgg gccgcgagcg
      961 cggccccgac cttggcgatg ttgcgcggat cgagctggat gtgcggattg ccctgcgcat
     1021 ggacgtcgcc ctcgctgcgg tcgagccggg tcgggacctc gagcggcgtc acgaagcggc
     1081 cggcctcgaa attcgcaggc gcccccggcg caagacgggc attgcccgat tgctggatca
     1141 gcaccggcag ccagccgatc tcgagctcca tgccggtgca ggcaatcagg tcggcgctgc
     1201 gcatgcgcgc gatcaggctc ggccgggcct cgatgtgatg cgggtcctgc gccgcgttcg
     1261 tggccgaact gacgttcacc ttgtcgccgc cgatctcctt ggcgagcgcg gcccactcgg
     1321 gctcgcaggc gacgacgttc aaggccgcgt gggcctgcag gctgcacgcg gccacgcagg
     1381 cgacggcgaa ggctctcgcc ggcatccgga attggcgggg aaatgcgagg agtttcatgg
     1441 tcgtgtccta gaacgtgtgc gcgccatgag caccgaggct catgatgtac tgcaggaaga
     1501 gttgacgatc ggtcgccgcc gggttgctgc ggtcggcagc gagttgcagg cgaaagcgac
     1561 tgaactccga cagcgagtaa tcgaccatca cggtggcgcg cgaaggccgc gcgctttgca
     1621 ggatggggaa gtcggctgcg ctcaacgtac cggccgtgac gagcccgatg tccggcgatc
     1681 cggaatcgag ccggtcgtag cggaccccgg cgcgccactg cggcacgaac tgatagacgg
     1741 cctgcagata ccagccgctc tgcgtcgcgc gatagtcgcc gctgttgccg cctccgatgc
     1801 cggtcgcctg ggtcagcgtg ccgctctcgg tgcggcggaa gtactcgccc tgcagcttga
     1861 agttggttcg cgtggcattg ccagcgggcg accacttgta gatgccgtcg aggatccagg
     1921 tgcgggtgct gccgctgaac cggttgttca ccggtgcgcc cacggcatcg acgtccgcgt
     1981 aggcccgatc gctcgcgcgg ttcgacacga ccgacacgcc ggtgcgccag ctcgcgctct
     2041 cgccgatgtc gtcgccgagg tgcgcgaaga gcgcgctcga gccgatcccg ttgcgatggc
     2101 tctcgctgcc cggaaagcca cggcccgcgc cgagttcggc gccgagctcg
//
LOCUS       DASVHM010000395         4504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_101373, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000395 DASVHM010000000
VERSION     DASVHM010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4504
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101373"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..714)
                     /locus_tag="VF308_07440"
     CDS             complement(<1..714)
                     /locus_tag="VF308_07440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEX7436522.1"
                     /translation="MQADTALALDAPDAPASTAAAALLDDPVAQAAFTVWEQSAKGPR
                     IARSHLQLGGLFCAACAGIIEQALLREPGVAQAHVNYSTRRALVAWDGSATRLSTLIA
                     AIARAGYSAAPDAAAPSRALRQTEQRSALWRLFVAVFCMMQVMMYAAPLYWAAPGTLA
                     PDLRTLLLWAAWLLSIPVVLFSAAPMFGDALRGLRQRRIGMDLPVALGVAVMFIVSSG
                     ATFDPGGVFGNDTYFDSLTM"
     gene            complement(731..1321)
                     /locus_tag="VF308_07445"
     CDS             complement(731..1321)
                     /locus_tag="VF308_07445"
                     /EC_number="1.-.-.-"
                     /EC_number="1.6.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011463688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEX7436523.1"
                     /translation="MIRRRIFVIQGHPDPDGGHLLHALAQSYLDGAASASHEVRSAAV
                     ARLDFPLLRTKLDWDTGSVPPGLAEAQQAIAWANHLVLFFPLWLGDMPALLKGFLEQV
                     ARPGFALGAPGEGGMGKKLLGGRSARVVVTMGMPAPVYRWYFQAHSVKSLERNILGFC
                     GIAPIHRTLIGMVEEMDDARRRKWLDALGELGAKGE"
     gene            1450..1872
                     /locus_tag="VF308_07450"
     CDS             1450..1872
                     /locus_tag="VF308_07450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018905985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX7436524.1"
                     /translation="MKILIAADGSSYTKRMLAYIAAHDEWLGPKHSYTVIHSVLAVPH
                     RVAAFVGADVVAKFHEEDAEAVFRPIRAFFKQQGIEATFIHTVGHAADSIANLAQEGK
                     FDLLLMGSRGHGDLANLVLGSVATKVLAKCSTPVLLVR"
     gene            complement(1888..>4504)
                     /locus_tag="VF308_07455"
     CDS             complement(1888..>4504)
                     /locus_tag="VF308_07455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020653172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional acetate--CoA ligase family
                     protein/GNAT family N-acetyltransferase"
                     /protein_id="HEX7436525.1"
                     /translation="GASDRDRSIGALVLRNLKDAGFAGPIWPVSLSHATVGGMPAAQR
                     VALLPEVPDLAVICTPAPTVPGLIAELGAHGTRAAIVLTAGLKASRQAGGPSLEAEML
                     AAARPHLVRILGPNCLGLLVPGVCLNASFAPAAARPGSLAFLSQSGALATALLDWANS
                     RGIGFSHFVSLGDSADVDLGDLLDYLAADAETRAILLYVESVAAARKFMSAARAAARN
                     KPVLIVKSGRAPEGARAAASHTGALAGSDAVFDAAIRRAGMLRVDTMADLFDAAETLA
                     RAKPLRGERLAIVTNGGGAGVLAADALALGGGALTRFEASTLAALDASLPATWSHANP
                     VDLIGDAPIERYVAALHAVLDAPETDAVLFMHAPTAVVPAADIAAACLPLLRASEKPV
                     LTCWLGGDAVAAASAACEDARVATFETPERAVAGFLQLLNYRRNQEALLQTPPSRLPG
                     PPADSAAARAIVERALAEGREMLEEQEVRSLLGAYGIAQVESRPALDPEAAAAAAAEI
                     GFPVVLKILSPQISHKSDVGGVTLDLRSVEAVQRAALEMHARIAALRPDAALHGYTVQ
                     AMVVRPHAHELIVGVADDPIFGPVILFGAGGTAVEVLRDRAVALPPLNAVLAQDLISR
                     TRVARLLAGYRDRAPADAEALIASLLQVSQLACDLPEVAEMDINPLLADDHGVIALDA
                     RVRVRAVAAGVSRLAIRPYPTELEERIELASGTILLRPIRPEDEPKLRAFYAGASPAD
                     MRLRFFMVRREVPHSELARYSQIDYDREMTFIALEDGATDDRLLGEARALCDPDNVRA
                     EFAIQVATEWQGRGLGRALLTKLMRYLRAQGTREVVGECLPENPGMVHLARELDFETH
                     YAAETGSVALRCTLR"
BASE COUNT          700 a         1539 c         1637 g          628 t
ORIGIN      
        1 catcgtcagc gaatcgaaat aggtgtcgtt gccgaaaacg ccgcccggat cgaaggtcgc
       61 acccgagctg acgatgaaca tgacggcgac gccgagcgcc accggcaggt ccatgccgat
      121 gcggcgttgg cgcaggccgc gcagcgcatc gccgaacatc ggtgccgcgg agaaaagcac
      181 gaccggaatg ctgagcagcc acgccgccca gagcagcagc gtgcgcaggt cgggggccag
      241 cgtgccgggc gccgcccaat agagcggcgc cgcgtacatc atcacctgca tcatgcagaa
      301 caccgcgacg aagaggcgcc agagtgcgct gcgttgctcg gtctggcgca gcgcgcgcga
      361 aggtgccgcc gcgtcgggcg cggcgctgta gccggcccgc gcgatcgccg cgatcagagt
      421 cgacaggcgc gtcgccgagc cgtcccatgc gaccagtgcg cgccgggtgc tgtagttcac
      481 atgcgcctgc gcgacgcccg gctcgcgcag gagcgcctgt tcgatgatgc cggcgcaggc
      541 cgcgcagaag agaccgccga gttgcagatg tgagcgggcg atgcgcggcc ccttcgctga
      601 ctgttcccag accgtgaagg cggcctgcgc aaccgggtcg tcgaggagcg ctgccgccgc
      661 tgtggacgca ggagcgtccg gggcatcgag cgcgagggcc gtgtcggctt gcatgggtgg
      721 tgcgccggcg ctactcgccc ttcgcgccga gttcgcccag cgcgtcgagc catttgcgac
      781 gccgcgcgtc gtccatttct tcgaccatgc cgatcagcgt gcggtgaatc ggcgcgatgc
      841 cgcagaagcc gaggatgttg cgctcgagtg atttcacgct gtgggcctgg aagtaccagc
      901 gatagaccgg cgccggcatg cccattgtga cgaccacccg cgccgagcgg ccgccgagca
      961 gcttcttgcc catgccgccc tcgccgggcg cgccgagcgc aaagcccggc cgggcgacct
     1021 gctcgaggaa gcccttgagc aacgccggca tgtcgccgag ccagaggggg aagaacagca
     1081 cgaggtggtt cgcccaggcg atggcctgct gggcctcggc gagtccgggc gggacggacc
     1141 cggtgtccca gtccagcttg gtgcgcagca gggggaagtc gagccgcgcg accgcggcgc
     1201 tgcgcacctc atgcgacgcg ctcgccgcgc cgtccaggta gctctgcgcg agcgcgtgca
     1261 ggaggtgtcc gccgtccgga tcgggatgtc cctggatgac gaagatgcgt cgacggatca
     1321 tgcgcagagt cctgggaagt ccccgctcat attctcgtcc ggtagcggcc gcatccttga
     1381 ttttcgacaa gatacgggcc gcgcggactg gcaacactgg tgaccgaaac cgcgaggaaa
     1441 ggaaaggcga tgaagatcct gatcgctgcc gatggcagtt cctacacgaa gcgcatgctg
     1501 gcctacatcg ctgcgcacga cgaatggctc gggcccaagc acagctacac cgtcatccat
     1561 tccgtgctgg ccgttccgca ccgggtggcg gcgttcgtcg gcgcggacgt ggtcgccaag
     1621 tttcacgaag aggatgccga ggcggtattc cggccgatcc gggccttttt caagcagcag
     1681 ggcatcgagg cgaccttcat ccacacggtc ggtcatgcgg ccgattcgat cgcgaatctg
     1741 gcgcaagaag gcaagttcga tctgctcctg atgggctcgc gcggccatgg cgatctcgcc
     1801 aatctcgtgc tcggttcggt cgctaccaaa gtgctggcga agtgctcgac gccggtgctc
     1861 ctggtgcgct gaagcagcgc cgccgaatca ccgcagcgtg cagcgcagcg cgaccgagcc
     1921 ggtctcggcc gcgtagtgcg tttcgaaatc gagttcgcgc gccaggtgga ccatgcccgg
     1981 attctcgggc aggcactcgc cgaccacctc gcgcgtgccc tgcgcgcgca ggtagcgcat
     2041 cagcttggtc agcaaggcgc gtccgaggcc gcggccctgc cactcggtcg ccacctggat
     2101 cgcgaattcg gcgcgcacgt tgtccgggtc gcagagggcg cgggcctcgc cgagcaggcg
     2161 atcgtccgtg gcgccgtcct cgagggcgat gaacgtcatc tcgcggtcgt agtcgatctg
     2221 gctgtagcgc gccagctcgg agtgcggcac ttcgcgccgg accatgaaga aacgcaggcg
     2281 catgtcggcc gggctcgcgc cggcgtagaa ggcgcgcagc ttcggttcgt cctcggggcg
     2341 gatcgggcgc agcaggatcg tcccggaggc gagttcgatg cgttcctcga gctcggtcgg
     2401 atacggtcgg atggcgagtc gcgaaacgcc cgccgccacg gcccgcaccc gcacgcgcgc
     2461 gtcgagcgcg atcacgccgt ggtcgtcggc gagcagtggg ttgatgtcca tctcggccac
     2521 ttcgggcagg tcgcaggcga gttgcgacac ctgcagcagg ctggcaatga gggcctcggc
     2581 atcggcgggc gcccgatccc gatagccggc gagcagccgc gcaacccgcg tgcgcgagat
     2641 caggtcctgc gccagcaccg cgttgagcgg cggcaacgcc accgcccggt cgcgcaacac
     2701 ctcgaccgcg gtgcctccgg cgccgaacag gatcaccggg ccgaagatcg gatcgtcggc
     2761 gacgccgacg atcagctcgt gcgcatgcgg acgcaccacc atcgcctgca ccgtgtagcc
     2821 atgcagggcg gcgtcgggcc ggagcgcggc gatgcgcgca tgcatctcga gcgccgcacg
     2881 ctgcacggcc tcgaccgagc gcaggtcgag cgtgactccg ccgacatcgg acttgtgcga
     2941 gatctggggc gagaggatct tcaggacgac cggaaagccg atctcggcgg ccgccgcggc
     3001 ggccgcttcg gggtcgagcg cggggcgcga ttcgacctgc gcgatcccgt acgcgccgag
     3061 caggcttcga acctcctgct cctcgagcat ctcgcgaccc tcggcgagtg cgcgctcgac
     3121 gatcgcccgg gccgccgcgc tgtcggccgg cggaccgggc aggcgcgatg gcggcgtctg
     3181 cagcagggct tcctggttgc gccggtagtt gagcagttgc aggaatccgg cgaccgcgcg
     3241 ttccggcgtc tcgaaggtcg cgacccgcgc gtcctcgcag gccgcgcttg ccgcggccac
     3301 ggcgtcgcct ccgagccagc aggtcagcac cggcttttcg gatgcgcgca gcagcggcag
     3361 gcacgcagcc gcgatgtcgg cggcgggcac caccgcggtg ggcgcgtgca tgaagaggac
     3421 ggcatcggtc tccggcgcgt cgagcacggc gtgcagcgcc gcgacatagc gctcgatggg
     3481 cgcgtcgccg atcagatcga ccggattggc gtgcgaccag gtcgccggca ggctcgcatc
     3541 gagcgccgcc agggtcgacg cttcgaagcg agtcaacgcg ccgccgccga gcgcgagcgc
     3601 atcggcggcc agcacgccgg caccgccgcc gttcgtgacg atggcgaggc gttcgccgcg
     3661 cagcggcttt gcacgcgcga gcgtctcggc ggcgtcgaag aggtcggcca tcgtgtcgac
     3721 gcgcagcatc ccggcgcggc gtatcgccgc atcgaacacc gcgtcggagc cggcgagcgc
     3781 gccggtgtgc gatgcagccg cgcgcgcgcc ttctggcgcg cgccccgact tgacgatgag
     3841 gaccggcttg ttgcgcgccg cggcgcgggc cgctgacatg aacttgcgcg ccgccgcgac
     3901 cgattcgacg tagagcagga tggcccgggt ttcggcgtcg gcggccagat agtcgagcag
     3961 gtcgccgaga tcgacatcgg cgctgtcgcc gagcgacacg aagtgcgaaa agccgatgcc
     4021 gcgcgagttg gcccagtcga gcaatgcggt cgccagcgcg cccgattggg acaggaaggc
     4081 aagtgagccg ggccgcgccg cggccggggc gaagctcgcg ttcaggcaca cccccggcac
     4141 cagcaggccc aggcagttcg gcccgaggat gcgcaccagg tgcgggcggg ccgccgcgag
     4201 catttcggct tcgaggctgg gcccaccggc ctgccgcgac gccttgaggc cggcggtcag
     4261 cacgatcgcg gcgcgcgttc cgtgcgcgcc tagttcggcg atcaggccag gcacggtcgg
     4321 cgccggcgta cagatcaccg cgaggtcggg cacctccggc agaagggcga cgcgctgcgc
     4381 ggcgggcatg ccgccgaccg tggcatgact gaggctgacg ggccagatcg gtccggcaaa
     4441 accggcatcc ttcaggttgc gcagcaccag cgcaccgatg ctgcgatctc ggtccgaggc
     4501 accg
//
LOCUS       DASVHM010000396         2576 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1182304, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000396 DASVHM010000000
VERSION     DASVHM010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2576
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1182304"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..138
                     /locus_tag="VF308_07460"
     CDS             <1..138
                     /locus_tag="VF308_07460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019451507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose transferase"
                     /protein_id="HEX7436526.1"
                     /translation="AYPMLSLGYVVNAVAAWWLFGEALGPMRGTGILLILAGVFVMSR
                     T"
     gene            163..1314
                     /locus_tag="VF308_07465"
     CDS             163..1314
                     /locus_tag="VF308_07465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012356263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HEX7436527.1"
                     /translation="MSDPSFLPFARPAIDAATIAEVGRVLASGWITSGPKVLAFEAQL
                     SGLFGGRPVRAFANGTATMEVALRLAGIGPGDEVVTTPITWVATANVIGAVGATPVFA
                     DVDPRTRNIDLTAVEAAITPRTRALMPVYLAGMPVDMERLYAIARKHGLRVVEDAAQA
                     IDSRWNQQRIGSFGDLVSFSFQANKNITCAEGGCLVMNSPAEAERSERLRLQGVVRSG
                     PDGMDVESPGGKFNLTDINATIGLGQLARLSEVTRRRAELAETYFDAAAHAGLAGLGI
                     ELPPPINRTGAITNWHMFQVLVPADRLKGGRAALMQAMREAGIGTGVHYPAIHLFSYY
                     RSLGWRDGMLPHAERIGRSILTLPLYPALRSGDVERVCLGLAEACKRLL"
     gene            1314..2276
                     /locus_tag="VF308_07470"
     CDS             1314..2276
                     /locus_tag="VF308_07470"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012356264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX7436528.1"
                     /translation="MRLPEVSVVIPVYNEEDVLPALFERLYPVLDALGESYEIIFVND
                     GSTDRSAPLLAAQFHKRPDVTRVVLFNGNFGQHMAILAGFEHVRGRIAVTLDADLQNP
                     PEEIPNLIAAIRAGHDYVGTIRRQRNDSAFRRTASRLMNGLRERITRIRMTDQGCMLR
                     AYDRALVDTLNACREVNTFIPALAYTFAATPTEIEVEHEPRHAGESKYSLYGLIRLNF
                     DLVTGFSIVPLQWFSLIGTLLSLFSGALFVLLLVRRFLLGAEVEGVFTLFALQFFLTG
                     IMLFGIGLMGEYVGRIQQEVRNRPRYRISTVLEAPPTRTVEAAA"
     gene            2273..>2576
                     /locus_tag="VF308_07475"
     CDS             2273..>2576
                     /locus_tag="VF308_07475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008648545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltransferase"
                     /protein_id="HEX7436529.1"
                     /translation="MRAVVFAHSNVGDRCLRVLRARGVEVPLVVTHRDHPGETIWFER
                     VADTAAELGLPVIYGDDPEDPDLAAAVARARPDFIFSFYYRAMIPAAVLGLATRGAF"
BASE COUNT          387 a          925 c          822 g          442 t
ORIGIN      
        1 gcctacccga tgctctcgct cggctatgtc gtcaacgccg tcgcagcctg gtggctgttc
       61 ggcgaggccc tcgggccgat gcgcggcacc ggaatcctgt tgatcctcgc cggcgtcttc
      121 gtgatgtcgc gcacctgact cccgtttcat cgcctgtcgc tcgtgtccga tccttccttc
      181 ctgcccttcg cgcgccccgc catcgatgcc gccacgatcg ccgaagtcgg ccgcgtgctc
      241 gcatcgggct ggatcacgtc ggggccgaag gtgctggcct tcgaggcgca gttgtccggg
      301 ctgttcggcg gccggcccgt gcgcgccttt gcaaacggca cggcgacgat ggaggtggcc
      361 ctgcgcctgg ccggcatcgg gccgggcgac gaagtcgtta ccaccccgat cacctgggtc
      421 gccaccgcca atgtcatcgg cgcggtcggc gcgacgccgg tattcgcgga tgtcgatccg
      481 cgcacgcgca acatcgatct gaccgccgtc gaggcggcga tcacgccacg aacgcgcgcc
      541 ctcatgccgg tctacctcgc gggcatgccg gtcgacatgg agcgactcta cgccatcgcc
      601 cgcaagcacg gcctgcgcgt cgtcgaagat gccgcccagg ccatcgactc gcgctggaac
      661 cagcagcgca tcggcagctt cggcgacctg gtgagcttca gcttccaggc caacaagaac
      721 atcacctgcg ccgagggcgg ctgcctggtg atgaactcgc cggcggaagc cgaacgcagc
      781 gagcgactgc gcctgcaagg tgtcgtacga tcgggcccgg acggcatgga cgtcgaatcc
      841 ccggggggca aattcaacct caccgacatc aacgcgacca tcggccttgg ccaactggcc
      901 cggctgtccg aagtgacccg ccggcgcgcc gagctggcag agacctactt cgatgccgcc
      961 gcccatgccg ggctcgccgg actgggcatc gagctgccac cccccatcaa ccgcaccggc
     1021 gccatcacca actggcacat gttccaggtg ctggtgccgg ccgaccggct gaagggcggt
     1081 cgcgccgcgc tgatgcaggc catgcgcgag gccggcatcg gcacgggggt gcactacccg
     1141 gcgatccacc tgttctccta ctaccgttcg ctcggctggc gcgacggcat gctgccgcac
     1201 gcggaaagaa tcgggcgcag catcctcacg ctgccgctgt atcccgccct gcgttcgggc
     1261 gatgtcgagc gggtctgtct tggtctggcc gaagcatgca aacgccttct ctgatgcgtc
     1321 tccccgaagt ctcggtcgtg atccccgtgt acaacgagga agacgtgctg ccggcgttgt
     1381 tcgagaggct ctaccccgtg ctcgacgcac tgggcgaatc ctacgaaatc atcttcgtca
     1441 acgatggcag cacggaccgc tccgctccgc tgctcgcggc ccagttccac aagcgcccgg
     1501 atgtgacgcg cgtcgtgctg ttcaacggca acttcggcca gcacatggcg atcctggccg
     1561 gcttcgagca tgtccgcggc cggatcgccg tcacgctcga tgccgacctg cagaacccgc
     1621 ccgaggagat tccgaatctc atcgcggcga tccgcgccgg ccacgactac gtgggcacga
     1681 tcagacgcca gcgcaacgac agcgcctttc ggcgcacggc atcgagattg atgaacgggc
     1741 tgcgcgagcg gatcacgcgc atccgcatga ccgaccaggg ctgcatgttg cgggcttacg
     1801 accgcgccct ggtcgacacg ctcaacgcct gccgcgaggt gaacaccttc atcccggcac
     1861 tggcctacac gttcgccgcg acgccgaccg agatcgaggt cgagcacgag ccgcgtcacg
     1921 cgggtgaatc gaagtattcg ctgtacgggt tgatccgcct gaatttcgac ctggtgaccg
     1981 ggttctcgat cgtcccgctg cagtggttct cgctcatcgg cacgctgctg tcgctcttct
     2041 cgggcgcgtt gttcgtgctg ctgctggttc gccgcttcct cctcggcgcg gaagtcgaag
     2101 gcgtgttcac gctgttcgcc ctccagttct ttctcaccgg catcatgctg ttcggcatcg
     2161 ggctgatggg cgaatacgtc ggccgcatcc agcaggaagt gcgcaaccgg ccgcgctacc
     2221 ggatcagcac cgtgctcgaa gccccgccaa cgcgcacggt cgaggccgcg gcatgagggc
     2281 ggtcgtcttt gcgcattcga acgtcggcga ccgctgcctg cgcgtgctgc gcgcgcgcgg
     2341 cgtcgaggtg ccgctcgtcg tgacgcaccg cgaccacccc ggcgagacga tctggttcga
     2401 gcgcgtggcc gataccgcgg ccgagctcgg gctgccggtg atctacgggg acgaccccga
     2461 agacccggat ctggccgccg ccgtcgcgcg ggcccgcccc gacttcatct tctccttcta
     2521 ctaccgagcc atgatccccg cagccgtgct ggggctggcc acgcggggcg ccttca
//
LOCUS       DASVHM010000397         2096 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1399282, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000397 DASVHM010000000
VERSION     DASVHM010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1399282"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..652)
                     /locus_tag="VF308_07480"
     CDS             complement(<1..652)
                     /locus_tag="VF308_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEX7436530.1"
                     /translation="MNAPTDISRLVPSLDGKVCAEEWQTRVDLAAAYRLVAHFKWDDL
                     VFTHLTARIPGTSHYLINPYGLMFDEITASSLVKIDLQGNVLQETSFPINPAGFTIHS
                     AVHAVRHDVQCVMHTHTLNGVAVSAQKAGVLPISQQSIFVISSLAYHDYEGVALRDEE
                     KPRLVADLGDKTFLMLRNHGLLTVGKTIADAFQAMYFFEATCAIQLRAQAGGTLASG"
     gene            complement(698..1654)
                     /locus_tag="VF308_07485"
     CDS             complement(698..1654)
                     /locus_tag="VF308_07485"
                     /inference="COORDINATES: protein motif:HMM:NF033920.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PA2778 family cysteine peptidase"
                     /protein_id="HEX7436531.1"
                     /translation="MTIGRVALALALATAVSGCAILLPQSEAFRTQWPATLGDRAELA
                     TVPFFTQKDYECGPAALAMVLAFDAVPVTPDELVPKVYVPARKGSLQIEMLAAPRAYG
                     VVSWQLGPRLEDVLREVEAGTPVIVLQDYGVWPVAVWHYAVVIGFDRASSKVVLRSGE
                     KERLEMPLPVLEYIWKPSRYWAIVAMPPDRIAATATEASWAAAVAAMERVSSRAAART
                     AYRTLLARWPDSLNGAIGLANVQYADADFGAAEQVLRGAVAQHPESAVALNNLAQVLS
                     DEGRHAEALQVIEEAIARGGPFQKDAEQTRAQIRAKMDAARR"
     gene            complement(1708..2073)
                     /locus_tag="VF308_07490"
     CDS             complement(1708..2073)
                     /locus_tag="VF308_07490"
                     /inference="COORDINATES: protein motif:HMM:NF042483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA2779 family protein"
                     /protein_id="HEX7436532.1"
                     /translation="MKSTAFKMLCRLLIVSLFALPFQSAMAGMIGTQQALAAASAQAD
                     RDAIVSALTRSDVASQLQAQGVDTNAAKARVAAMTDQEASALAGQIQSVPAGAHTNGW
                     TIAAVVIIAIVVWYFYAYK"
BASE COUNT          340 a          683 c          726 g          347 t
ORIGIN      
        1 cgccgctcgc gagcgtgccg ccggcctgcg cacgcagctg gatcgcgcag gtcgcctcga
       61 agaagtacat cgcctggaac gcgtcggcga tggtcttgcc gaccgtcagc aggccgtggt
      121 tgcgcagcat gaggaaggtc ttgtcgccga ggtcggcgac gaggcgcggc ttctcctcgt
      181 cgcgcagcgc gacgccttcg tagtcgtgat acgcgaggct cgagatcacg aagatcgact
      241 gctgcgaaat cggcagcacg ccggccttct gcgccgacac cgcgacgccg ttcaacgtgt
      301 gggtgtgcat cacgcactgg acgtcgtggc gcaccgcgtg taccgcgctg tggatcgtga
      361 agccggccgg gttgatcgga aaggacgtct cctgcagcac gttgccctgc aggtcgatct
      421 tgacgaggct cgacgcggtg atctcgtcga acatcaaacc atagggattg atcaggtagt
      481 ggctcgtacc cggaatgcgc gccgtgaggt gggtgaagac gaggtcgtcc cacttgaaat
      541 gggcgaccag ccggtacgcc gccgcgaggt cgacccgggt ctgccattct tcggcgcaga
      601 ccttgccgtc gaggctcggg acgagccggc tgatgtcggt cggtgcgttc atgaagactc
      661 cttcccacgc agtgcgcgtg gcgccggtga ttttcgccta gcggcgcgcc gcgtccatct
      721 tcgcgcgaat ctgtgcgcgt gtctgttcgg cgtccttctg gaacgggcca ccgcgggcga
      781 tcgcttcctc gatgacctgc aacgcttccg cgtggcgccc ctcgtcggac agcacctggg
      841 ccaggttatt gagggcgacc gcggactcgg ggtgctgcgc cacggcgccg cgcagcacct
      901 gttcggcggc gccgaagtcg gcgtcggcat actgcacgtt ggccaggccg atcgcgccgt
      961 tcaggctgtc gggccagcgc gcgagcagcg tgcgatacgc ggtgcgcgcc gccgcccggc
     1021 tcgacacccg ttccatcgcc gcgaccgcgg ccgcccagga tgcttcggtc gccgtcgccg
     1081 cgatgcgatc gggcggcatc gcgacgatgg cccagtagcg gctcggcttc cagatgtatt
     1141 cgagcaccgg cagcggcatt tcgaggcgtt ccttttcgcc cgaacgcagc accaccttgc
     1201 tgcttgcgcg gtcaaagccg atgacgacgg cgtagtgcca caccgcgacc ggccagacgc
     1261 cgtaatcctg gagcacgatc accggcgtgc cggcttcgac ttcgcgcagg acatcttcga
     1321 ggcgcggccc gagctgccac gacaccacgc cgtaagcgcg cggcgcggcg agcatctcaa
     1381 tctgcaggct gcccttgcgt gccggtacat agaccttggg gacgagctcg tcaggagtca
     1441 ccggcaccgc gtcgaaggcg agcaccattg ccagcgccgc cggcccgcat tcgtagtcct
     1501 tctgcgtgaa gaaaggcacc gtggcgagct cggcgcggtc gccgagagtc gccggccatt
     1561 gggttcgaaa cgcctcggac tgcggcagca ggatggcgca gccggacacc gccgtagcga
     1621 gggcgagcgc gagcgcgaca cgcccgatcg tcaagacgcc cgcgcgaggg cgggcgtcgg
     1681 tcaagcggaa aggaaacaat cggcggatta cttgtaggcg tagaagtacc acacgacgat
     1741 cgcgatgatg accacggcgg cgatcgtcca gccattggtg tgggcaccgg ccggcactga
     1801 ctggatctgg cctgcgagcg cgctcgcttc ctggtcggtc atcgcggcga cacgggcctt
     1861 ggcggcattc gtgtcgacac cctgggcctg caactggctg gcgacgtcgc tgcgcgtcag
     1921 cgcactgacg atcgcatcgc gatcggcctg ggccgacgcg gcggcaagcg cttgctgggt
     1981 gccgatcatg ccggccatcg cggactggaa gggcaaggcg aaaagcgaga cgatgagcag
     2041 acggcaaagc atcttgaacg cagtcgattt catgaaagtc tccggtggtt tcggtt
//
LOCUS       DASVHM010000398         1757 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1182474, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000398 DASVHM010000000
VERSION     DASVHM010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1182474"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..822
                     /locus_tag="VF308_07495"
     CDS             <1..822
                     /locus_tag="VF308_07495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7436533.1"
                     /translation="AHVVVNDLGATLDGKPDDERPAQEVAAQIEALGGEAIVDGGSVA
                     EWGAAHKMVEAALAAFGRIDIVVNNAGILRDAMFHRMSEPEFDDVVAVHLKGSFNVSR
                     AAAPHFKAQGSGCYVHMTSTSGLIGNFGQANYSAAKLGIAALSKSIALDMQRFGVRSN
                     AVAPFAWTRMIDSIPSETPEQKKRVDGLKKLVPEKIAPFVVGLCADAAHDVTGQIFGV
                     RNNEIFLFSQPRPIRSAHRGEGWTPESVLETALPMLRADFYALDRSSDVFTWDPV"
     gene            891..1355
                     /locus_tag="VF308_07500"
     CDS             891..1355
                     /locus_tag="VF308_07500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX7436534.1"
                     /translation="MATETHSIDWELRLGFLIHDVSRLRRSAFDRCLKPLNVTRSQWW
                     VLAYLSREDGMTQSQLAEELDLGKVAVGGLIDRLEKSGLVRRDADASDRRVNRVFLEP
                     KSKQLITRMRKVSHRLNEQILSGLSDDKLGSTATTLGAMKGNLLTYLQTTDS"
     gene            1488..>1757
                     /locus_tag="VF308_07505"
     CDS             1488..>1757
                     /locus_tag="VF308_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008904666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436535.1"
                     /translation="MDISASANLPRSGHEPATGLPLSVEGVDLRFGGIHALRNVSFAA
                     APGQITAIIGPTLSRRVLDALAQSMVAADTEAHVAVFTHGLPINVV"
BASE COUNT          312 a          595 c          572 g          278 t
ORIGIN      
        1 gcgcacgtcg tcgtcaacga tctcggcgcc acgctcgacg gcaagcccga cgacgagcgg
       61 ccggcgcagg aagtcgcggc gcagatcgag gcgcttggcg gcgaggcgat cgtcgacggc
      121 ggctcggtcg ccgagtgggg cgcggcacac aagatggtcg aggccgcgct cgccgcgttc
      181 ggacgcatcg acatcgtcgt caacaatgcc ggcatcctgc gcgacgcgat gttccaccgc
      241 atgagcgagc cggagttcga cgacgtggtc gcggtgcacc tgaagggcag cttcaacgtc
      301 agccgtgccg ccgcgccgca tttcaaggcg cagggcagcg gctgctacgt ccacatgacc
      361 tcgacctcgg gcctgatcgg caacttcggg caggcgaact acagcgcggc caagctcggc
      421 atcgcggcgc tctcgaagtc gatcgcgctc gacatgcagc gcttcggcgt gcgttccaac
      481 gcggtcgcgc cattcgcctg gacccggatg atcgactcca ttccgagcga gacgcccgaa
      541 cagaagaagc gcgtcgacgg gctgaagaag ctggtgccgg aaaagatcgc gcccttcgtc
      601 gtcggcctct gcgccgatgc ggcgcacgac gtcaccgggc agatcttcgg cgtgcgcaac
      661 aacgagatct tcctgttcag ccagccgcga ccgatccgca gcgcccaccg cggcgagggc
      721 tggacgccgg aaagcgtgct cgagaccgcg ctgccgatgc tgcgtgccga cttctacgca
      781 ctcgatcgct cgagcgacgt gttcacctgg gaccccgtct agcgaacaga ccctagaatg
      841 tacgcatcct tacagtaaat gatcggcccg cgcgggtcgg tctccaccga atggcaactg
      901 agactcacag catcgactgg gaacttcgac tcggcttcct gattcacgac gtgtcccggc
      961 tgcgccgcag tgcgttcgac cgttgcctga agccgttgaa cgtcacgcgg tcgcagtggt
     1021 gggtgctggc ctatctgtcg cgcgaggacg gcatgaccca gtcgcagctg gccgaggaac
     1081 tcgatctcgg caaggtggcg gtcggcggcc tgatcgaccg gctcgagaag tccggcctgg
     1141 tgcgacgcga cgccgacgcg tccgatcggc gcgtcaaccg cgtctttctc gaacccaaga
     1201 gcaagcagct gatcacgcgc atgcgcaagg tcagccatcg cctgaacgag cagatccttt
     1261 ccggcctttc ggacgacaag ctgggcagta ccgcgacgac gctgggtgcg atgaagggca
     1321 acctgctcac ctacctccag acgaccgact cctgaagcgg tgcagggcgg ggaaaacacc
     1381 aagctgcgga accatattat gcggtagtgt acggttttca caggcttcgt cgcagcgcct
     1441 gtccaggggc gccgagtcgc ccggacggca acccctactg gcagtgtatg gatatttcgg
     1501 cgtcagccaa cctgccgcgc agcgggcacg aaccggcaac cggcctcccg ctctcggtcg
     1561 aaggcgtcga cctgcgcttc ggcggcatcc acgccttgcg caacgtgtcg ttcgcggcag
     1621 cgcccgggca gatcacggcg atcatcggcc caacgctttc gcgccgggtg ctggatgcgc
     1681 tggcccaatc gatggtcgcc gccgacaccg aggcgcacgt cgccgtcttc acgcacggcc
     1741 tgccgatcaa cgtcgtg
//
LOCUS       DASVHM010000399         5265 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_896335, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000399 DASVHM010000000
VERSION     DASVHM010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5265
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_896335"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..386)
                     /locus_tag="VF308_07510"
     CDS             complement(<1..386)
                     /locus_tag="VF308_07510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HEX7436536.1"
                     /translation="MTSISARRAGAALALFAGALAGCQSLQSSENFLGVVTPYRVEVV
                     QGNVITNEQVALAKPGLTRAQVRDVLGSPLLADPFHADRWDYVFTIRRQGAAPQLRRV
                     VVRFKSDILEGLEGGADLPSEHEFVAS"
     gene            494..922
                     /gene="fur"
                     /locus_tag="VF308_07515"
     CDS             494..922
                     /gene="fur"
                     /locus_tag="VF308_07515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009516273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HEX7436537.1"
                     /translation="MTHAEELKNSGLKATLPRIKVLEVFQNTTQRHMSAEDVFRVLLA
                     EHADIGLATVYRVLMQFEQAGILSRNHFESGKSVFELNEGKHHDHLVCLDCGRVEEFF
                     DAEIEKRQKSIALARGFELQDHALALYAACTKKNCEFKVK"
     gene            complement(947..1897)
                     /gene="hprK"
                     /locus_tag="VF308_07520"
     CDS             complement(947..1897)
                     /gene="hprK"
                     /locus_tag="VF308_07520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010101391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr(Ser) kinase/phosphatase"
                     /protein_id="HEX7436538.1"
                     /translation="MKPTVISAEALFEEFRTALHWEWIAGHAHPERHFDDDAVRDARS
                     AADLVGYLNYIHPNRVQIVGRREVAYLNQTSADVTERRISRIVTLDPPVLICADGQVP
                     PDRLVALCDRADIPLFVTEESAGHVIDVVRGYLGQHFAERTTRHGVFMDILGLGVLLT
                     GESGLGKSELGLELISRGHGLVADDAVDLYRVSQTALEGRCPDLLMNLLEVRGIGLLD
                     IKAIFGETAVRRKMRLKLIVHLVRKETMDRDFERLPYEPLSEDVLEVPVRKTVIAVDA
                     GRNLAVLVEAAVRNTILQLRGIDTYAEFIERHHRAMGKSE"
     gene            complement(2003..2473)
                     /locus_tag="VF308_07525"
     CDS             complement(2003..2473)
                     /locus_tag="VF308_07525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEX7436539.1"
                     /translation="MNRLAAILPAVDVLVDVDATSKKRAFEQAGLLFENQHAIARATV
                     TDNLFARERLGSTGLGHGVAIPHGRIKGLKNPLAAVLRVRQAIAFDAPDDEAVSLLIF
                     LLVPEAATQRHLEILSEIAEMLSDRELRERLKSEVDPAEVHRIIAAWEPLKSVA"
     gene            complement(2634..2975)
                     /gene="raiA"
                     /locus_tag="VF308_07530"
     CDS             complement(2634..2975)
                     /gene="raiA"
                     /locus_tag="VF308_07530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_component: GO:0022626 - cytosolic ribosome [Evidence
                     IEA];
                     GO_function: GO:0045182 - translation regulator activity
                     [Evidence IEA];
                     GO_process: GO:0009386 - translational attenuation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HEX7436540.1"
                     /translation="MNLTISGHHLDVTPAIREYVVAKLDRITRHFDQVVDITVLLSIE
                     KPAEKERRQKAEVTVHVKGKDLFAECTSEDLYAAIDQLMDKLDRQVVRHKDKVQNHHH
                     DAPKRTDATLS"
     gene            3223..4182
                     /gene="corA"
                     /locus_tag="VF308_07535"
     CDS             3223..4182
                     /gene="corA"
                     /locus_tag="VF308_07535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015914531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEX7436541.1"
                     /translation="MLNVFTLANGRLFQEEIESHQALAHVQPVWVDLDAPTEEEKGWI
                     AQRFGLTIPSDAVDDDLEESARFYEEDNGELHIRTDFLIDDETPRNVRVAFILHRNIL
                     FSVHAEDLPVFRLLRLRARRIPALIGDAKDVLLKLYDADAEYSADALEGIYDGLEAVS
                     ARVLRQNVDDKAAGEALSAIAKEEDLNGRIRRNVMDTRRAVSFMMRSRMLGAEQFEEA
                     RQILRDIDSLDSHSTFLFDKINFLMNATVGFININQNKIIKIFSVASVALLPPTLIAS
                     IYGMNFKAIPELDWRYGYVYAIGLMIASVAAPFIYFRRKGWLR"
     gene            complement(4179..>5265)
                     /locus_tag="VF308_07540"
     CDS             complement(4179..>5265)
                     /locus_tag="VF308_07540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD/FAD-binding protein"
                     /protein_id="HEX7436542.1"
                     /translation="YNEGAAPKLAALLAELGVATAPAEMSFSAQIPAAGIEWSSAGPA
                     GVFAQRANLLRPAFWNMLGEIPRFNRHAATLARSASAPAHDDSVGDFLAAHRFSKGFR
                     DWYLLPLLGCIWSCPTEQMLRMPVTAMARFCRDQGLLKIMHRPRWNSVRGGADIYVRR
                     MLSQVADARLATPVRQVKRLPIGGADVSSDRGTERFDTVVFACHSVDALALLADPSAD
                     EREVLGAFHYQRNRAILHTDARVLPLRPSAWAAWNYEAARDDSGEAGAVCVHVLVNRL
                     QPLPFDVPVIVSLNPVQEPAAASVQGEFHYAHPVFDRRALAAQERLPALQGHADTWFC
                     GAWTGLGSHEDGLASALAVCARLAGGR"
BASE COUNT          850 a         1722 c         1885 g          808 t
ORIGIN      
        1 gaggcgacga actcgtgctc gctcggcagg tcggcgccac cttcgaggcc ctcgaggatg
       61 tcgctcttga agcggacgac gacccggcgc aactgcggcg ccgcgccctg gcggcggatc
      121 gtgaagacgt agtcccagcg atcggcgtgg aacgggtcgg cgaggagcgg cgagccgagc
      181 acgtcgcgaa cctgggcacg ggtcaggccg ggcttggcga gcgcgacctg ctcgttggtg
      241 atgacgttgc cctgcacgac ctcgacccgg tacggcgtga cgacgccgag gaagttctcg
      301 gacgactgca gcgactggca gccggcgagc gcgccggcga agagagcgag ggccgcgccg
      361 gcacggcgtg cggagatcga tgtcatgggt gtcgtgaggg gcgccgcgcg agggtcgtcg
      421 acgcgaggcc aaggctcgta tgatggaccg attctaccgg cgcgcccctg cgcgccgggc
      481 tcgtccgaag cccatgaccc acgccgaaga actgaagaac agcggcctca aggcgacgct
      541 gccgcgcatc aaggtgctcg aggtcttcca gaacacgacc cagcgccaca tgagcgccga
      601 ggacgtcttt cgcgtcctcc tcgccgagca cgccgacatc ggcctggcga cggtctaccg
      661 cgtcctgatg cagttcgagc aggccggcat cctctcgcgc aaccacttcg agagcggcaa
      721 gtcggtcttc gagctgaacg aaggcaagca ccacgaccac ctggtctgcc tcgactgcgg
      781 ccgggtcgag gagttcttcg acgccgagat cgagaagcgc cagaagagca tcgctctggc
      841 gcgtggcttc gagctgcagg accacgcgct cgcgctctac gccgcgtgca cgaagaagaa
      901 ctgcgaattc aaggtgaagt gacgcgcctc ggcgcgcctc ggccggctac tcggacttgc
      961 ccatcgcccg gtggtggcgc tcgatgaact cggcgtaggt gtcgatgccg cgcaactgca
     1021 ggatcgtgtt gcgcaccgcc gcctcgacca gcaccgcgag gttgcggccg gcgtcgacgg
     1081 cgatcaccgt ctttcgcacc ggcacctcga ggacgtcctc gctgagcggc tcgtagggaa
     1141 gccgctcgaa gtcgcggtcc atcgtttcct tgcggacgag atggacgatg agcttcaggc
     1201 gcatcttccg gcgcaccgcg gtctcgccga agatcgcctt gatgtcgagc aggccgatgc
     1261 cgcgcacctc gagcaggttc atcagcaggt cggggcaacg cccttcgagg gcggtctgcg
     1321 agacgcggta caggtcgacc gcgtcgtcgg cgacgaggcc gtggccgcgc gagatcagct
     1381 cgaggccgag ctcgctcttg ccgaggcccg attcgccggt gaggagcacg ccgaggccga
     1441 ggatgtccat gaagacgccg tgccgcgtcg tccgctcggc gaagtgctgg ccgaggtagc
     1501 cgcgaacgac gtcgatcacg tggccggccg attcctcggt gacgaagagg gggatgtcgg
     1561 cgcggtcgca gagcgcgacc aggcgatcgg gcggcacctg gccgtcggcg cagatgagca
     1621 ccggcgggtc gagcgtgacg attcgcgaga tgcgccgctc ggtgacgtcg gcgctggtct
     1681 ggttgaggta ggcgacctcg cgccggccga cgatctggac ccggttcggg tgaatgtagt
     1741 tgaggtagcc gaccaggtcg gcggccgagc gcgcgtcgcg cacggcgtcg tcgtcgaaat
     1801 ggcgctcggg atgggcgtgg ccggcgatcc actcccagtg cagggcggtg cggaactcct
     1861 cgaacagcgc ctcggcgctg atgacggtcg gtttcatggg gcccggtggc gcctcccgtt
     1921 ggtcactgcc cccagaggag gcgcggccgg gcttgggagc ggcccggcgc ccggccggac
     1981 gacgctcacc tcacagccct gctcaagcta ccgatttgag cggctcccag gcggcgatga
     2041 tccggtgcac ctcggccggg tcgacttcgc tcttgaggcg ctcgcgcagc tcgcggtcgg
     2101 acagcatctc ggcgatctcg gacaggatct cgaggtggcg ctgcgtcgcc gcctcgggga
     2161 cgagcaggaa gatcagcagc gacacggcct cgtcgtcggg cgcgtcgaag gcgatcgcct
     2221 ggcgcacgcg cagcaccgcc gcgagcgggt tcttcagccc cttgatgcgg ccgtggggga
     2281 tggcgacgcc gtggccgagc ccggtcgagc cgagccgttc gcgcgcgaac aggttgtcgg
     2341 tgaccgtggc gcgggcgatc gcgtgctggt tctcgaacag caggccggcc tgctcgaacg
     2401 cgcgtttctt gctggtggcg tcgacgtcga ccaggacgtc gacggcgggc aggatggcgg
     2461 cgagacgatt catgaggggc gcgccggcgg cggctggcga tccgcgccgg cgggagtgac
     2521 aaaaagatga aacgaattat ggagtcgggg cggccgacgc gccgggtttc aaccccctca
     2581 gtcgatggat ggcggcgcgg tgcagcggca cggcaacacc gccgctgcgg cggtcaactg
     2641 agggtggcgt cggttcgttt gggcgcgtcg tggtggtggt tctggacctt gtccttgtgg
     2701 cggacgacct ggcggtcgag cttgtccatc agctggtcga tcgccgcgta gaggtcttcc
     2761 gaggtgcact ccgcgaacag gtccttgccc ttgacgtgaa cggtcacctc ggccttctgt
     2821 cggcgttcct tctcggccgg cttctcgatc gagagcagga ccgtgatgtc gaccacctgg
     2881 tcgaagtgcc gcgtgatccg atccagcttg gcgacgacgt attcgcgtat cgccggagtc
     2941 acgtcgaggt gatgaccgct gatcgtcaga ttcatgtaaa tcctttcggg agtgcgtcgg
     3001 gagacggtag cagagcggcc gaagcctgtc tcgtgaaaag ggtcgtcggg tcggggtcgg
     3061 aatcagtcta tcgccgtggc gaacagcaca cgctgccgtc gcgccggcgg cacggccgat
     3121 gcgataattt cgtcaccgca tctcgagacg acgttcttgg acatttctca ccctcggtga
     3181 ccgtccgctc cggcgagcca ggtcatgctc gacggagcct tcatgctgaa cgtcttcacg
     3241 ctggccaacg gccggctctt ccaggaagag atcgaaagcc accaggcgtt ggcccacgtc
     3301 cagccggtct gggtcgacct cgacgcgccg accgaggagg aaaagggctg gatcgcgcag
     3361 cgcttcggcc tgacgatccc gagcgacgcg gtcgatgacg acctcgagga atcggcccgc
     3421 ttctacgagg aagacaacgg cgagctgcac atccgcaccg acttcctgat cgacgacgag
     3481 acgccgcgaa acgtccgcgt cgccttcatc ctccatcgca acatcctgtt ctcggtccac
     3541 gccgaggacc tgccggtgtt tcgcctgctg cgtctgcgcg cgcgccgcat cccggcgctg
     3601 atcggcgatg ccaaggacgt gctcctgaag ctctacgacg ccgacgccga gtattccgcc
     3661 gacgcgctcg aaggcatcta cgacggcctc gaagcggtga gcgcgcgcgt tctgcgccag
     3721 aatgtcgacg acaaggcggc gggcgaggcg ctttcggcga tcgccaagga agaggacctc
     3781 aacggccgca tccgcaggaa cgtgatggac acgcgccgcg ccgtcagctt catgatgcgc
     3841 agccggatgc tcggcgccga gcagttcgag gaggcgcgcc agatcctgcg cgacatcgac
     3901 tcgctcgaca gccacagcac gttcctgttc gacaagatca acttcctgat gaacgcgacg
     3961 gtcggcttca tcaacatcaa ccagaacaag atcatcaaga tcttctcggt cgcgagcgtc
     4021 gcgctgctgc cgccgacgct gatcgcgagc atctacggca tgaacttcaa ggcgatcccc
     4081 gagctcgact ggcgctacgg ctacgtgtac gcgatcggct tgatgatcgc ctcggtcgcg
     4141 gcgccgttca tctacttccg ccggaagggc tggctgcgct agcggccgcc ggccaggcgc
     4201 gcgcagacgg cgagcgccga ggcgaggccg tcctcgtgcg agccgagacc ggtccaggcg
     4261 ccgcagaacc aggtgtcggc gtgcccctgc agggcgggca ggcgctcctg cgcggcgagg
     4321 gcgcgccggt cgaagaccgg atgggcgtag tggaattcgc cctgcaccga cgccgcggcc
     4381 ggctcctgga ccggattgag cgagacgatc accggcacgt cgaacggcaa gggctgcagg
     4441 cgattgacga gaacgtggac gcagacggcg cccgcctcgc ccgagtcgtc gcgcgcggcc
     4501 tcgtagttcc aggccgccca cgcgctgggc cgtagcggca ggacgcgcgc gtcggtgtgc
     4561 aggatcgccc ggttgcgctg atagtggaac gcgccgagca cctcgcgctc gtcggcgctc
     4621 gggtcggcga ggagggcgag cgcgtcgacg ctgtggcagg cgaagacgac ggtgtcgaag
     4681 cgctcggtgc cgcggtcgct cgagacgtcg gcgccgccga tcggcagtcg cttgacctgc
     4741 cgcaccggcg tcgcgaggcg ggcgtccgcg acctgcgaca gcatcctgcg gacgtagatg
     4801 tcggcgccgc cacgcaccga attccagcgc ggccggtgca tgatcttcaa caggccttga
     4861 tcgcggcaga agcgcgccat cgccgtgacc ggcatgcgca gcatctgctc ggtcgggcac
     4921 gaccagatgc agccgagcag cggcagcagg taccagtcgc gaaagccctt cgagaagcga
     4981 tgcgcggcga ggaagtcgcc gaccgaatcg tcgtgggcgg gtgccgacgc cgagcgcgcc
     5041 agcgttgccg cgtggcggtt gaagcgcggg atctcgccga gcatgttcca gaacgccggt
     5101 cgcaacaggt tggcccgctg ggcgaacacc cccgccgggc cagcgctgct ccattcgatg
     5161 ccggcggcgg gaatctgcgc cgagaacgac atctcggccg gcgcggtggc gacgccgagc
     5221 tcggcgagca gggccgcgag cttcggcgcg gcgccctcgt tgtag
//
LOCUS       DASVHM010000400         4118 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_390570, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000400 DASVHM010000000
VERSION     DASVHM010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4118
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390570"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..934
                     /locus_tag="VF308_07545"
     CDS             <1..934
                     /locus_tag="VF308_07545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020653147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HEX7436543.1"
                     /translation="AMLPTDGVGLARMEFIVAEHIKAHPMALVHPEKVDDPAVRDEIA
                     RLTQGFERPADYFVRQLAEGVGTIAAAFYPKPVIVRMSDFKTNEYASLLGGRWFEPKE
                     ENPMLGFRGASRYTHPAYAEGFALECAAMKRVREPMGLSNVKLMIPFCRRVQEAERVL
                     QAMAAHGLGRGVNGLEIYVMCEIPNNVIQIDAFARLFDGFSIGSNDLTQLVLGVDRDS
                     ALVAFDFDERDEGVKAMIRQTIEGARRNHRHAGICGQAPSDYPEMAEYLVELGIDSMS
                     VTPDTLLKITREVLAVEKRLGRPPRGSDAAGGSS"
     gene            931..1311
                     /locus_tag="VF308_07550"
     CDS             931..1311
                     /locus_tag="VF308_07550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011801471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX7436544.1"
                     /translation="MSAPISSLMERRVWAVDMDDTVAEVESLFARQGVSWAPVLESKR
                     TIVGVISASGLLQFHAQRQDPSAVRAWQLCSYKPITVSPDTPVSEVARLMIDRKIHHV
                     VVTDNEGIAGVVSSLDFVRSFVRD"
     gene            complement(1336..2115)
                     /locus_tag="VF308_07555"
     CDS             complement(1336..2115)
                     /locus_tag="VF308_07555"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX7436545.1"
                     /translation="MRTPVEDAGTTTKPFYWKLVRNIRRAFRAPLPDHRAYQDLIRGK
                     EGIEIGGPTKLFRRDLPIYAAAKSVDGVNFSATTVWEGRLAEGLTYRTMKRKVGRQFI
                     ADATDLSRLPAESYDFVLSSNNLEHIANPLKAVGEWLRLLRPGGHLLLVLPRKESNFD
                     HRRDITAFRHLLDDLEQGTTEHDLTHLEEILECHDYAMTPDTGDRETLKQRGLANFEN
                     RCLHHHVFDPALIEAVFRHFGVQPVLQTTTATDYVAVAMKP"
     gene            complement(2124..2855)
                     /locus_tag="VF308_07560"
     CDS             complement(2124..2855)
                     /locus_tag="VF308_07560"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX7436546.1"
                     /translation="MNDLEAYFRRNTGRRIHKWMHYFEIYDRHFARFRGQAPVVLEFG
                     VSQGGSLQMWRDYFGPGTRLYGVDINPECKRFEEDGVRIFIGDQADRNFLRTLAATVP
                     PIDILIDDGGHTMEQQIATFEEIFPHVKPHGVYLCEDLHTSYWHRWGGGYRKRGSFIE
                     YSKNWVDALHAWHSRAPRQLKVSDFTRSAHSLHYYDSVLVVEKRPMQPPTNEATGETL
                     FPDYAVPSRGVVERLQRMLKRVRGK"
     gene            complement(2852..3952)
                     /locus_tag="VF308_07565"
     CDS             complement(2852..3952)
                     /locus_tag="VF308_07565"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HEX7436547.1"
                     /translation="MPSDRFRRILVICTRQLGDVLLTTPLIDAAKRRWPEAQVDVLGF
                     AGTLGLLRGNPQVGELIEVPAGSGRLQSFSLIRRLWRQYDLALIAQYSDRAHLYGAVA
                     ARRRSGLVLKDRSTSWWKRLLLDHMVEVDEDQTHAVLEKLRLIAPWTAPQDEIRVQPP
                     PARELPVEIGKRLRARYVVVQVPTIVHYKQWPLVHQSALVQGLLADGIQVVLSGGPSE
                     ADRAKTAQVAHAVIGADSGQVLDLAGALDLNQMVTLLRGAALYIGPDTSITHLAAACD
                     IPVIAIYGPIDPRLWGPWPQAHAPVQPYVERARRQQRSTIVVLQGDPPCVPCNRQGCE
                     RHNDSRSECLETLMPQRVLDEARATLSAHAPP"
BASE COUNT          661 a         1363 c         1418 g          676 t
ORIGIN      
        1 cgccatgctg cccaccgacg gcgtgggcct ggcacgcatg gagttcatcg tcgcggagca
       61 catcaaggcg cacccgatgg cgctggtgca cccggagaag gtcgacgacc cggcggtgcg
      121 cgacgagatc gcccgcctga cgcaaggttt cgagcgcccg gcggactact tcgtgcgcca
      181 gctcgccgaa ggcgtgggca ccatcgccgc ggcgttctac cccaagcccg tgatcgtgcg
      241 catgtccgac ttcaagacca acgagtacgc cagcctgctc ggcggccgct ggttcgagcc
      301 gaaggaagaa aacccgatgc tcggcttccg cggcgcctcg cgctacacgc acccggctta
      361 tgccgagggc ttcgcgctgg aatgcgcggc gatgaagcgc gtgcgcgaac ccatgggcct
      421 gagcaacgtg aagctgatga tcccgttttg ccgccgcgtg caggaggccg agcgcgtgct
      481 gcaggcgatg gccgcgcacg ggctcggacg cggggtcaac gggctcgaga tctacgtgat
      541 gtgcgagatt cccaacaacg tgatccagat cgacgcgttc gcccgactgt tcgatgggtt
      601 ctcgatcggc tccaacgacc tgacgcagct cgtgctcggg gtggaccgcg attccgcact
      661 cgtcgccttc gacttcgacg aacgcgacga aggcgtcaag gcgatgatcc gccagacgat
      721 cgagggcgcg cggcgcaacc accgccatgc cggcatctgc ggccaggccc cgtccgacta
      781 tccggagatg gccgaatacc tcgtggagct gggcatcgat tcgatgagcg tcacccccga
      841 cacgcttctg aagatcacgc gcgaggtgct ggctgtcgaa aagcggctgg gacggccgcc
      901 gcgcggcagc gacgcggctg gaggttcatc gtgagcgcac ccatttcttc gttgatggaa
      961 cgccgggtct gggccgtcga catggacgac accgtcgcgg aggtcgagag cctgttcgcc
     1021 cgccagggtg tgtcatgggc cccggtactc gaatccaagc gcacgatcgt gggcgtgatc
     1081 agcgcatcgg gcctgctgca gttccatgcg cagaggcagg acccgagcgc agtgcgggcg
     1141 tggcagctgt gcagctacaa gccgatcacc gtcagcccgg acacgccggt cagcgaagtg
     1201 gcgcgactca tgatcgatcg aaagatccat cacgtcgtcg tgaccgacaa cgagggcatc
     1261 gcgggggtgg tgtcgtcgtt ggacttcgtg cggagcttcg tccgcgactg aagcccggca
     1321 agcgctgggc gctcttcaag gcttcatcgc aaccgcgacg tagtcggtcg cggtcgtcgt
     1381 ctgcagcacg ggctgcacgc cgaagtgccg gaacaccgcc tcgatcagcg ccgggtcgaa
     1441 cacgtggtgg tgcaggcagc ggttctcgaa attggcgagg ccgcgttgct tgagcgtctc
     1501 gcggtcgccg gtgtccggag tcatcgcgta gtcgtgacac tcgaggattt cctcgaggtg
     1561 cgtcaggtca tgctcggtcg tgccctgctc caggtcatcg aggaggtggc ggaacgcggt
     1621 gatgtcgcgg cggtggtcga agttgctctc cttgcgcggc agcaccagca gcagatggcc
     1681 gcccgggcgc aggaggcgca accattcgcc gaccgccttc agcggattgg cgatgtgctc
     1741 gaggttgttc gacgagagca cgaagtcata ggactcggcc ggcaggcggc tgaggtcggt
     1801 cgcgtcggcg atgaactgcc gcccgacctt gcgcttcatg gtgcggtacg tcaggccctc
     1861 ggcgaggcgc ccttcccaga ccgtcgtggc gctgaagttc acgccgtcca ccgacttcgc
     1921 cgccgcgtag atcggcaagt cgcggcggaa gagtttcgtc ggaccgccga tctcgatgcc
     1981 ctccttgccg cggatcaggt cctggtacgc gcggtggtcg ggcagcggcg cgcgaaatgc
     2041 gcgccggatg ttgcgcacca gcttccagta gaagggcttc gtcgtcgtgc cggcgtcttc
     2101 gacgggggtt cgcattgccg gctttacttt ccgcgcacac gcttcaacat gcgctgcaga
     2161 cgctcgacca cgccgcgcga cggcaccgca tagtccggga acagcgtctc gccggtcgcc
     2221 tcgttggtcg gcggctgcat cgggcgcttc tcgaccacga gcacgctgtc gtagtagtgc
     2281 agcgaatggg ccgagcgcgt gaagtcggag accttcagct ggcgcggcgc gcgcgaatgc
     2341 caggcgtgca gcgcgtcgac ccagttcttg ctgtactcga tgaacgaacc gcgcttcctg
     2401 tagccgccgc cccagcggtg ccagtacgag gtgtgcaggt cttcgcaaag atagacgcca
     2461 tgcggcttca cgtgcggaaa aatctcctcg aacgtcgcga tctgctgctc catcgtgtgc
     2521 ccgccgtcgt cgatcaggat gtcgatcggc ggcaccgtcg cggcgagcgt gcgcaggaag
     2581 ttccggtcgg cctggtcgcc gatgaagatg cgcacgccgt cttcctcgaa gcgcttgcac
     2641 tcggggttga tgtcgacgcc gtagagccgt gtgccgggac cgaaatagtc cctccacatc
     2701 tgcagcgagc cgccctgcga aaccccaaac tcgagcacca ccggcgcctg gccgcggaag
     2761 cgcgcgaagt gccggtcgta gatctcgaag tagtgcatcc acttgtggat gcgccggccg
     2821 gtgtttcgcc tgaaatacgc ttcgaggtcg ttcatggggg agcgtgggca ctcagcgtcg
     2881 cccgtgcctc gtccagcacg cgctgcggca tcagcgtttc caggcattcg ctgcggctgt
     2941 cattgtgccg ctcgcagcct tgccggttgc agggcacgca gggcgggtcg ccctgcagca
     3001 ccacgatcgt cgagcgctgc tgccggcgcg cgcgctctac atagggttgc acgggcgcgt
     3061 gcgcctgcgg ccacggtccc cagaggcggg ggtcgatcgg tccgtagatc gcgatcaccg
     3121 gaatgtcgca agccgccgcc aggtgggtga tggaggtgtc ggggccgatg tagagcgcgg
     3181 cgccgcgcag cagcgtcacc atctggttca ggtcgagcgc cccggcgagg tcgagcacct
     3241 gcccgctgtc ggccccgatc accgcgtgcg cgacctgcgc cgtcttcgcc cgatcggcct
     3301 cggaaggtcc gccgctcagg accacctgga tcccgtcggc gagcagcccc tgcaccagcg
     3361 cgctctgatg cacgaggggc cactgcttgt agtggacgat cgtcggcacc tggaccacga
     3421 catagcgcgc acgcaggcgc ttgccgatct cgaccggcaa ttcacgggcg ggcggcggct
     3481 gcacccggat ctcgtcctgc ggcgccgtcc acggcgcgat caggcggagt ttctcgagca
     3541 ccgcatgcgt ctggtcttcg tcgacctcga ccatgtgatc gagcagcagg cgcttccacc
     3601 acgaggtcga acgatccttg agcacgaggc cgctgcgccg gcgcgccgcg accgcgccgt
     3661 agaggtgcgc gcggtcgctg tactgcgcga tcagcgcgag gtcgtactgg cgccagaggc
     3721 ggcggatcag cgagaacgat tgcagccggc ccgaccctgc cggaacctcg atcaactcgc
     3781 cgacctgcgg gttgccacgc aggaggccga gcgttcccgc aaagccgagc acgtcgacct
     3841 gcgcctcggg ccagcgccgc ttggccgcat cgatcagcgg cgtggtcagc agcacgtcgc
     3901 cgagctggcg ggtgcagatg acgaggatgc gacggaagcg gtcggagggc atcaaccgat
     3961 tgtgcgatcc cggatgggca tgttcaaatc gatccacacc cgacgactgc caggaggcac
     4021 atgaccgatc cccacaccac gaaccgcctg cgccgcagac tcgtcgccgg gggtgccggc
     4081 ctgctcgcgg gggccggcct cggcacgctg agccgggc
//
LOCUS       DASVHM010000401         4477 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1329235, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000401 DASVHM010000000
VERSION     DASVHM010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4477
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1329235"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..465
                     /gene="ureE"
                     /locus_tag="VF308_07570"
     CDS             <1..465
                     /gene="ureE"
                     /locus_tag="VF308_07570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreE"
                     /protein_id="HEX7436548.1"
                     /translation="VELDWDVRQKSRFDAIDTQGRSLGVFLPRGRVVRGGDVLVAEDG
                     SLIKVVAKPQPVLIVRACPEHGSAFDLLRAAYHPGNRHVQLQLERDHLKLEPDHVLAA
                     MLRRMHLIVTAADEAFEPEAGAYASGAHAQADADSHEHEHEHEHGHSHDHPD"
     gene            552..1205
                     /locus_tag="VF308_07575"
     CDS             552..1205
                     /locus_tag="VF308_07575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory UreF family protein"
                     /protein_id="HEX7436549.1"
                     /translation="MWLASPALPVGGFSYSEGLEAAVESGLVIDEARATGWLLDQLHL
                     GLARSDMGVVAKAFSAWQRSDLAAVGTLNAWVASTRESSEMRQQAEQMGRSLSAWLGN
                     RGKNDDRLTALAALAPSPTWPIAFALAAAQSGAALRESLLAFAFGWAENMIQAAVKSI
                     PLGQSAGQRALARLVDAIPAAVDHAMTLDTGARQAFLPMLAILSAQHESQYSRLFRS"
     gene            1228..1872
                     /gene="ureG"
                     /locus_tag="VF308_07580"
     CDS             1228..1872
                     /gene="ureG"
                     /locus_tag="VF308_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HEX7436550.1"
                     /translation="MSALHAIRNRTRPLPPLRVGVGGPVGSGKTTLVELLCKAMRDSY
                     DLVVVTNDIYTKEDQRLLTVAGALEAERIMGVETGGCPHTAIREDASINLEAVDRMLV
                     KFPNADIVFIESGGDNLAATFSPELSDLTIYVIDVAAGEKIPRKGGPGITKSDLFVIN
                     KTDLAPYVGASLEVMEADTRRMRGARPFVMTNLKTRAGLDEVIRFIESRGLLKA"
     gene            complement(1950..2528)
                     /locus_tag="VF308_07585"
     CDS             complement(1950..2528)
                     /locus_tag="VF308_07585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSC84-related protein"
                     /protein_id="HEX7436551.1"
                     /translation="MNKRILAVAAAVTLALAGATGCSTTMSSTGGADPSVKRQSIDAN
                     VDGALSRLYEKSPGARELVSKARGTLVFPSVVSAGFVVGGSYGQGALRMRGAPEEYYS
                     LAAGSVGLLAGADSKVVVLLFMTQEALDKFESSKGWTVGADAGVTLVTVAANVEIDSK
                     TAQQAIIGFVMTNGGLMANVSLEGAKFSRLML"
     gene            complement(2695..3102)
                     /locus_tag="VF308_07590"
     CDS             complement(2695..3102)
                     /locus_tag="VF308_07590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX7436552.1"
                     /translation="MPDTAVGVLPQRLCASGDLAEKGRALVFDVLEYNQPVRAFALRY
                     EGRVVAYLNRCVHVPAEMDWQPGEFLDSEHEFILCATHGATYEPLTGRCAGGPCGRGR
                     LSVVEVEEREGQVYWIPSRDIRPAANERLRGQV"
     gene            complement(3095..3757)
                     /locus_tag="VF308_07595"
     CDS             complement(3095..3757)
                     /locus_tag="VF308_07595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019575032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEX7436553.1"
                     /translation="MNRPRRFDLIVFDWDGTLFDSTALIARCIQAACADVGTAVPSDR
                     DASYVIGLGLVEALQHAAPLLPRERYRDLAERYRHHYLASQHGVVLFDGTLEMLRSLK
                     SRNHLIGVATGKTRRGLDEALRSAQLESLFDATRTADETASKPDPRMLLELMRELGVE
                     PDRTLMIGDTTHDLQLAANAGAASIGVSYGAHDHDAFDGFATCHVADSTADLRTWLEE
                     HA"
     gene            complement(3754..>4477)
                     /locus_tag="VF308_07600"
     CDS             complement(3754..>4477)
                     /locus_tag="VF308_07600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEX7436554.1"
                     /translation="FPVIYEDDHLLALDKPAGVAVHGGSGVSFGVIEQLRRARPEARF
                     LELVHRLDKETSGLLLLAKKRSALLALQEQMRPGQGDKAMAKTYAALVAGSWPESLKV
                     IDVALHKYLDAAGERRVRTVDEAHEDGRRSITLVKVVRRFDAWSLLDVTLKTGRTHQI
                     RVHLADAGHVIAGDDKYGDRALNKALARGEAVPGCRFERMFLHARRLRFAHPASAQTI
                     ELEAPLPLACTRLLDALAASKP"
BASE COUNT          735 a         1546 c         1508 g          688 t
ORIGIN      
        1 gtcgaactcg actgggatgt gcgccagaag agccggttcg acgccatcga tacccagggg
       61 cgctcgctcg gcgtattcct gccgcgcggc agggtggtgc gtggcggcga cgtgctggtg
      121 gccgaggacg gctcgctgat caaggtcgtg gccaagccgc agccggtgct gatcgtgcgc
      181 gcctgcccgg aacatgggtc tgcgttcgac ctgctgcgcg ccgcctacca tcccggcaac
      241 cggcatgtgc agctccagct cgagcgggac catcttaagc tcgagcccga ccacgtgctc
      301 gccgcgatgc tgcggcgcat gcacctgatc gtgaccgcgg ccgacgaagc gttcgagccc
      361 gaagcgggcg cgtacgcgag cggcgcgcat gcgcaggctg acgcggactc gcacgagcac
      421 gagcacgagc acgagcacgg tcattcgcac gaccacccgg attgaagacg cgcccggggt
      481 cgagacgaaa ggcgccgccc cgtgtgcgcc gccaggccgc cccgctccgc gccgcggcgc
      541 tgctgcaact gatgtggctc gcctcgccgg cgttgccggt cggtggcttc agctattcgg
      601 aagggctcga agcagcggtc gagtcgggcc tcgtgatcga cgaagcgcga gcgaccgggt
      661 ggcttctcga tcaattgcat ctcggccttg cccgcagcga catgggggtc gtggcgaagg
      721 cgttctcggc ctggcagcgg agcgacctcg ccgcggtcgg cacgttgaat gcctgggtcg
      781 ccagcacgcg cgaatcgagc gagatgcggc aacaggccga gcagatgggc cggtcgctct
      841 cggcctggct cggcaaccgt ggcaagaacg atgaccgtct caccgcgctg gcggcgctgg
      901 cgccgtcgcc gacctggccg atcgcgttcg cactcgccgc agcgcagagc ggcgccgctc
      961 tgcgcgagtc gctgctcgcc ttcgcgttcg gctgggccga gaacatgatc caggcggcgg
     1021 tgaaatcgat cccgctcggc caaagcgccg ggcagcgcgc cctggcccgc ctggtcgatg
     1081 cgatacccgc cgccgtcgac cacgcgatga cgctcgatac cggggcgcgc caggccttcc
     1141 tgccgatgct cgcgatcctg tcggcgcaac acgagtcgca gtactcgcgc ctcttccgct
     1201 cgtgaacgca ccgcgataat ccgcaccatg agcgcactcc atgccatccg caaccgcacc
     1261 cgacctctgc cgccgctgcg cgtcggcgtc ggcggcccgg tcggttcggg caagaccacg
     1321 ctcgtcgaac tgctctgcaa ggcgatgcgc gacagctacg acctggtggt cgtgacgaac
     1381 gacatctaca ccaaggaaga ccagcgcctg ctcacggtgg cgggcgcgct cgaggccgaa
     1441 cgcatcatgg gcgtggaaac cggtggctgc ccgcacaccg cgatccgcga agacgcgtcg
     1501 atcaacctcg aagccgtcga ccggatgctc gtgaagttcc cgaatgccga catcgtcttc
     1561 atcgaaagcg gcggcgacaa cctggccgcg accttcagcc ccgaactctc cgacctgacg
     1621 atctatgtga tcgacgtcgc cgcgggcgag aagatcccgc gcaagggcgg tccgggcatc
     1681 accaagagcg atctcttcgt catcaacaag accgacctcg caccctacgt cggcgcgagc
     1741 ctcgaggtga tggaagccga cacgcggcgc atgcgcggcg cgcggccctt cgtgatgacc
     1801 aacctgaaga cgcgcgccgg cctcgacgaa gtgatccgct tcatcgagag ccgcgggctg
     1861 ctgaaggcct gacgcaaacg aggacgaaga agctccgccg ctggcggcac cacgatcggc
     1921 tctcgagcgg acgacgggtc aatcgacgat cagagcatga gccgcgagaa cttggcgccc
     1981 tcgaggctga cgttcgccat caagccgcca ttggtcatca cgaagccgat gatcgcctgt
     2041 tgagcggtct tgctgtcgat ctctacgttc gccgcgaccg tgaccagcgt caccccggca
     2101 tcggcgccga cggtccaacc cttgctggat tcgaacttgt cgagtgcttc ctgggtcatg
     2161 aagagcagga cgacgacctt cgagtcggcg cccgcgagca ggccgaccga accggctgcc
     2221 aggctgtagt actcctcggg ggcgcctcgc atccgcagcg cgccctggcc atacgatcca
     2281 ccgaccacga acccggccga gaccaccgac gggaacacca gcgtccccct cgccttgctc
     2341 accagttcgc gcgcgccggg actcttttca tagagacgcg aaagcgcgcc gtcgacgttg
     2401 gcatcgatgc tctggcgctt gaccgacggg tcggcacccc cggtgctgga catcgtcgtc
     2461 gaacagcctg ttgcgcccgc caatgcgagg gtaacggctg ccgcaactgc aagaattcgc
     2521 ttgttcataa ggatctctca agtgcctcgg gttcggcgcc agacggggtg aggcgatccc
     2581 cgaccggcat gaacccgatt caagcacccg gggcatcggg caacatccgg acaacgcgat
     2641 gcgttgcagt aggagcaggc cgcgcgagct gtcagggccc gcgcatcgat cccttcagac
     2701 ttggccgcga agtcgctcgt tcgctgccgg ccggatgtcg cgcgaaggaa tccagtagac
     2761 ctgtccttcg cgctcctcga cctcgaccac gctgaggcgg ccgcgaccgc acgggccacc
     2821 ggcgcagcgc ccggtcagcg gctcgtaggt cgcgccgtgc gtcgcgcaga ggatgaattc
     2881 gtgctcgctg tcgagaaact cgccgggctg ccaatccatc tcggccggca cgtggacaca
     2941 gcgattcagg taggccacga cccggccttc gtagcgcagc gcgaaggcgc gcaccggctg
     3001 gttgtactca agcacgtcga agaccagcgc ccggcccttc tcggcgagat cgcccgaagc
     3061 gcagagccgc tgcggcaaca caccgacggc agtgtcaggc atgctcttca agccacgtcc
     3121 tgaggtcggc ggtcgaatcc gccacgtggc aggtggcgaa gccgtcgaag gcgtcgtggt
     3181 cgtgggcgcc atagctcacg ccgatgctgg ccgcgccggc gtttgcggcc agctgcagat
     3241 cgtgcgtggt gtcgccgatc atcagggtgc ggtccggctc gacgccgagc tcgcgcatca
     3301 gttcgagcag catccgcgga tccggcttgc tggcggtttc gtcggcggtg cgcgttgcat
     3361 cgaagaggct ctcgagctgc gccgacctga gcgcttcgtc gaggccgcgc cgggtcttgc
     3421 cggtagccac gccgatcagg tggttgcggc tcttgagcga gcgcagcatc tcgagcgtgc
     3481 cgtcgaacag gacgacgccg tgctggctcg cgaggtagtg atgccgatag cgctcggcga
     3541 gatcgcggta gcgctcgcgc ggcaggagcg gcgccgcgtg ctgcagggcc tcgaccaggc
     3601 cgagcccgat cacgtagctc gcatcgcgat cgctcggcac ggccgtgccg acatcggcgc
     3661 aggcggcctg gatgcagcgc gcgatcaggg ccgtcgagtc gaacagcgtg ccatcccaat
     3721 cgaagacgat caggtcgaag cggcgcggcc gattcatggc ttcgatgccg cgagggcgtc
     3781 gagcagccgc gtgcaggcca ggggcagcgg cgcctcgagc tcgatcgttt gcgcactggc
     3841 cgggtgcgcg aagcgcagcc ggcgcgcatg caggaacatg cgttcgaagc ggcaaccggg
     3901 cacggcctcg ccgcgcgcca gggccttgtt cagggcacgg tcaccgtact tgtcgtcgcc
     3961 ggcgatcacg tgcccggcgt cggcgaggtg gacccggatc tggtgtgtgc gcccggtctt
     4021 gagggtcacg tcgagcaggg accaggcgtc gaagcggcgc accaccttga cgagcgtgat
     4081 cgagcgccgc ccgtcttcat gcgcttcgtc gaccgtgcga acccggcgtt cccccgctgc
     4141 gtcgaggtac ttgtgcaagg cgacatcgat gaccttcagg ctttccggcc agctgcccgc
     4201 caccagcgcc gcataggtct tggccatcgc cttgtcgccc tggcccggac gcatctgctc
     4261 ctgcagcgcg agcagcgccg aacgcttctt cgcgagcagc agcaggcccg aggtttcctt
     4321 gtcgagccgg tgcaccagtt ccaggaagcg tgcctcgggc cgcgcgcgcc gcagctgttc
     4381 gatcacgccg aagctgacgc cactgccacc atgcaccgcg accccggccg gcttgtcgag
     4441 cgcgagcaga tgatcgtctt catagatgac ggggaat
//
LOCUS       DASVHM010000402         3502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_28348, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000402 DASVHM010000000
VERSION     DASVHM010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3502
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28348"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            29..1054
                     /locus_tag="VF308_07605"
     CDS             29..1054
                     /locus_tag="VF308_07605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009515593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436555.1"
                     /translation="MQRRTLIRAAIAGPAAIALPGLVRAQTLEKPKVAIAVGGKNLLY
                     YLPLTIAESLGYFKAEGLDVTISDFSGGSRALQAVVGGSADVVSGAFEHTINMQVKGQ
                     RLRAFVLQGRAPQIVLGFNPKTMPWFKSIADLKGKKIGVTAPGASTNIVANFVLGKVG
                     IKPNAVSIIGVGAGSGAVAAMRSGQIDAMSNLDPVITLLQRSGDLQIITDTRIVADAD
                     RLFGGPMPAGCLYAPESLIERNPNTIQALTNAMVRADKWIQGAGPSDIVKAVPESYLL
                     GDRAVYIDAFLAAKGALSTDGMIPEAGAETARRALASIDPEVAAAKLDLKAVYTNEFV
                     RKANAKG"
     gene            1469..2272
                     /locus_tag="VF308_07610"
     CDS             1469..2272
                     /locus_tag="VF308_07610"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436556.1"
                     /translation="MSATALELDGVACTFIAEGDPGQRYTAVRDVSLSVGAGEFVSVV
                     GPTGCGKSTLLNVAAGLLEPSAGKVEVFGAPLTGINRRAGYMFQAESLMPWRSALQNV
                     AAGLEFRGVADANAQADDWLKRVGLGGFGDRYPHQLSGGMRKRVSLAQTLVLDPDIIL
                     MDEPFSALDIQTRQLMENEVLALWAEKKKAVLFITHDLDEAIALSDRVVVLSAGPASH
                     PIGEFAVDLKRPRDVAEVRTAPRFIELHQAIWSVLREEVLKGYRQQLAA"
     gene            2278..3105
                     /locus_tag="VF308_07615"
     CDS             2278..3105
                     /locus_tag="VF308_07615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018418131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436557.1"
                     /translation="MWKMLKPRQGNLRIWQIGLLVAIFMLWHVLTTPGLVPTFVFEND
                     RQAAFFFGEPLKIFGRIWDWFFAHADIYQHLWVTLLETVLAFALGTALGLACGLWLAL
                     SPLAAAIADPYIKALNSMPRVILAPIFAVWFGLGVASKVALGVTLVFFIVFFNVYQGV
                     KEVSPVVLASARMLGASQRQLLRHVYLPSATSWVFSSLHTSVGLAFVGAVVGEYLGSS
                     RGVGYLILQAEGAFDINTVMAGILVLTAFALLLDALVGRLEVRLMKWQPKAGETEKL"
     gene            complement(3117..>3502)
                     /locus_tag="VF308_07620"
     CDS             complement(3117..>3502)
                     /locus_tag="VF308_07620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436558.1"
                     /translation="VALREWRPSPVATAAAIVVVGKNAQREAERAQSFALDEYERQAR
                     VNAAQAAELRREAATKERLADEEAARRAAAREARRASEWRAYYKKPEYCDESLPNVDS
                     IGCANDFIRQRRAFDERFKFNAGRS"
BASE COUNT          554 a         1176 c         1161 g          611 t
ORIGIN      
        1 cggctgagac cacgaaggag accacgggat gcaacgccgt accctgatcc gcgccgccat
       61 cgccggcccc gccgcgatcg ccctgccggg gttggttcgg gcgcagacgc tcgagaagcc
      121 gaaagtcgcg atcgcggtcg gcggcaagaa cctgctttat tacttgccgc tgacgatcgc
      181 cgaaagcctc ggctacttca aggccgaggg tctcgacgtc acgatctccg atttctccgg
      241 cggctcgcgc gccctgcagg ccgtggtcgg cggcagcgcc gatgtcgtct cgggcgcatt
      301 cgagcacacg atcaacatgc aggtgaaggg ccagcgtctg cgcgccttcg tgttgcaggg
      361 gcgtgcgccg cagatcgtgc tcggtttcaa cccgaagacg atgccctggt tcaagtcgat
      421 cgccgatctg aagggcaaga agatcggcgt cacggcgccg ggagcgagca ccaacatcgt
      481 cgccaacttc gtgctcggca aggtcggcat caagccgaac gcggtttcga tcatcggcgt
      541 cggcgcgggc agcggcgcag tcgccgcgat gcgatcgggc cagatcgacg cgatgagcaa
      601 cctcgacccg gtgatcaccc tgctgcagcg ctcgggcgac ctgcagatca tcaccgacac
      661 gcgcatcgtc gccgatgccg atcggctctt cggaggcccg atgcccgccg gctgccttta
      721 tgcgcccgag agcctgatcg agcgcaatcc gaacacgatc caggcactca ccaatgcgat
      781 ggtgcgcgcc gacaagtgga tccagggcgc gggaccgtcc gacatcgtca aggcggttcc
      841 ggagagttat ctgctcggcg atcgcgcggt ctatatcgac gcctttctcg ccgccaaggg
      901 cgcgctctcg accgacggga tgatccccga ggcgggcgcc gagacggcgc ggcgcgcgct
      961 cgccagcatc gacccggagg tcgcggcggc caagctcgac ctgaaagcgg tctacaccaa
     1021 cgagttcgtc aggaaggcga acgcgaaggg gtgagaacct gcaggcatcg tcgatgcttg
     1081 ccgcagcccg ccgggactcg gcccggcaag ccgagtcact cacggaactt cgccgcttcg
     1141 cagcttcatt cacagtcgtt ccttgaatcg tctctctctg agggtttttc gaggtcaaag
     1201 aatatgaagc cgcgtagcgg cgaagctcgg tcgaggaatt gctgcatggg cgtcggtggt
     1261 accaagtggt gagctctttg cagttcgaag ctccggccga atcgtgttgg gtcttcttct
     1321 ttggtgactt tcttctgggc cagcagaaga aagttactcg gcatgcccgg ccgagaccgg
     1381 gcgggctccc gcgcgcagcg caggactatg caatttgctg caagcatcgg catgccaggc
     1441 cgagacttgg cggggcacgg aaggtcacat gagtgccacc gcgctcgaac tcgacggcgt
     1501 cgcctgcacc ttcatcgccg agggcgaccc cggacagcgc tatacggcgg tgcgcgacgt
     1561 gagcctcagc gtcggcgcgg gcgagttcgt ctcggtggtc ggcccgaccg gttgcggcaa
     1621 gagcacgctg ctcaatgtcg cggccgggct gctcgaaccg agcgccggca aggtcgaggt
     1681 gttcggcgcg ccgctcaccg gcatcaaccg gcgtgccggc tacatgttcc aggccgagag
     1741 cctgatgccc tggcgctccg ccctgcagaa cgtggccgcg ggactggagt tccgcggcgt
     1801 ggccgatgcg aacgcgcagg ccgacgactg gctgaagcgg gtcgggctcg gtggcttcgg
     1861 cgaccgctat ccgcaccagc tttccggcgg catgagaaag cgcgtcagcc tggcccagac
     1921 gctggtactc gaccccgaca tcatcctgat ggacgagccg ttctcggctc tcgacatcca
     1981 gacccggcag ctgatggaaa acgaagtgct cgcactctgg gccgagaaga agaaggcggt
     2041 gctcttcatc acccacgacc tcgacgaggc gatcgcgctg agcgaccggg tggtcgtgct
     2101 gtcggcgggg ccggcgtcgc atccgatcgg cgagttcgcg gtcgacctga agcgcccgcg
     2161 cgacgtcgcc gaagtccgga ccgcaccgcg cttcatcgag ctgcaccagg cgatctggtc
     2221 cgtgctgcgc gaagaggtgc tcaaaggcta tcggcagcag ctcgccgcct gaacgacatg
     2281 tggaagatgc tcaagcctcg ccaaggcaac ctgcggatct ggcagatcgg cttgctggtg
     2341 gcgatcttca tgctctggca cgtgctcacg acgccggggt tggtgccgac cttcgtgttc
     2401 gagaacgatc gccaagccgc gttcttcttc ggcgagccgc tgaagatctt cggtcgcatc
     2461 tgggactggt tcttcgccca cgccgacatc taccagcacc tctgggtcac gctgctcgaa
     2521 accgtgctcg cgttcgcgct cggcaccgcc ctcggcctcg cgtgcggcct gtggctcgcc
     2581 ctctcgccgc tcgccgcggc cattgccgac ccgtacatca aggcgctcaa cagcatgccg
     2641 cgcgtcatcc tcgcgccgat cttcgcggtc tggttcgggc tcggcgtggc gagcaaggtc
     2701 gcgctcggcg tcacgctcgt cttcttcatc gtcttcttca acgtctacca gggcgtcaag
     2761 gaggtgagcc cggtcgtgct ggccagcgcc cgcatgctcg gcgcgagcca gcgccagctg
     2821 ctgcgccacg tctacctgcc gagtgcgacg agctgggtct tcagttcgct gcacaccagc
     2881 gtcggcctgg cattcgtcgg cgcggtggtg ggcgaatacc tcggttcctc acggggcgtc
     2941 ggctacctga tcctgcaggc cgagggcgct ttcgacatca acaccgtgat ggccggcatc
     3001 ctggtgctga cggccttcgc cttgctgctc gacgcgctgg taggccggct cgaggtgcgg
     3061 ctgatgaagt ggcaacccaa ggccggcgaa accgaaaagc tctgactagg ccctacctag
     3121 ctccgcccgg cattgaattt gaaccgttcg tcgaaggcgc gccgctggcg gatgaagtcg
     3181 ttggcgcagc cgatcgagtc gacgttgggc agcgattcgt cgcaatactc cggcttcttg
     3241 tagtaggccc gccactcgct cgcgcgccga gcctcgcggg cggcggcgcg gcgcgcagcc
     3301 tcttcgtccg ccaggcgctc cttggtcgcg gcctcgcgcc gcagctcggc cgcctgtgcc
     3361 gcattcacgc gggcctgtct ctcgtattcg tcgagggcga agctctgcgc gcgctcggct
     3421 tcgcgctgcg cgttcttccc gaccacgacg atggcggccg cggtcgcgac cgggctgggc
     3481 cgccattcgc gcagggccac cg
//
LOCUS       DASVHM010000403         2634 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_896703, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000403 DASVHM010000000
VERSION     DASVHM010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2634
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_896703"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1524
                     /locus_tag="VF308_07625"
     CDS             <1..1524
                     /locus_tag="VF308_07625"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7436559.1"
                     /translation="RADGPEFLFCHALIRDGAYASLLHSRRRRLHARAAEWFEPNDLV
                     LAAEHFDRGEHPRAALAYLAASQAVSAQFRYQTALGLAARGLELAAERDARFALLMAR
                     ARLLVELGRAGDAIEAYRAALDASADSGERAQALIGMAAGMRLNDRIDEGLAALDEAE
                     PLAAEAGLALELSRLHHLRGNLLFPLGRHAQCLSEHERARQHARQAGSLEAEAAALGG
                     LGDAYYLHGHMRSAHEQFRECVALSRAHGFGRLEVANLPMVGWSVHYLNDLRGAVEVG
                     HEAIELAARASQPRAELMARILVAWIDGLLRDHSEAAERQIEEALRLSQVLGSRRFET
                     QLRGLTAMLALRRGDRDLARTLAWNALAICREHGMGHIGPWILGLCALVETDVEARRH
                     LLAEGELQLARGSVGHNHILLRDVAIDVALETGDWVAVEENCARIRTYTADEPLPMSD
                     FIIARGLALARFGQGERSTELQTALIGLGTVATHAELNAAMPAIENALAGFGASQPA"
     gene            1550..2038
                     /locus_tag="VF308_07630"
     CDS             1550..2038
                     /locus_tag="VF308_07630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006297032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HEX7436560.1"
                     /translation="MAVPSIDAKGAVPTLVLDTNVVLDWLLFRDARCGVLAEAIRVGQ
                     VRWVASPAMRAELQHVLARGIRGDWTIDAGSILYAWDRWATMVAAGDGPARPSLRCTD
                     ADDQKFIDLALQVRAQALLSSDRAGLKLRRRAATHGLRILTADAWQPQATGATAEAVS
                     SG"
     gene            complement(2093..>2634)
                     /locus_tag="VF308_07635"
     CDS             complement(2093..>2634)
                     /locus_tag="VF308_07635"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902914.1"
                     /note="DNA-dependent RNA polymerase catalyzes the
                     transcription of DNA into RNA using the four
                     ribonucleoside triphosphates as substrates. Subunit beta'
                     binds to sigma factor allowing it to bind to the -10
                     region of the promoter; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEX7436561.1"
                     /translation="ARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQITNPGDTS
                     YILGEQVERSELLGRNDKALAEGKLPATHADVLLGITKASLSTDSFISAASFQETTRV
                     LTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHDARKAKEAMDDAERRAIAVQEAE
                     ELAAVQLAAVDAGTESSDQ"
BASE COUNT          380 a          928 c          900 g          426 t
ORIGIN      
        1 cgcgccgacg gccccgagtt cctgttctgt cacgcgctga tccgcgacgg tgcctacgca
       61 tccttgctgc actcgcggcg ccgccgcctg catgcgcgcg cggccgaatg gttcgagccg
      121 aacgacctcg tgctcgcggc cgagcatttc gaccgcggcg agcacccgcg cgcggcgctc
      181 gcgtatctcg ctgccagcca ggcggtgtcc gcgcagtttc gctaccagac cgcactggga
      241 ctcgccgcgc gtggcctgga gctggccgcc gaacgggacg cccgcttcgc gctgctgatg
      301 gctcgggccc ggctcctggt cgagctcggc cgggccggcg acgcgatcga ggcgtatcgt
      361 gccgcgctcg acgcgtccgc agactcgggc gagcgcgccc aggccctgat cggaatggcc
      421 gccggcatgc gcctcaacga ccggatcgac gaaggcctgg cggcgctcga cgaggccgag
      481 ccgctggccg ccgaggccgg cctcgcgctc gagctctcgc gcctgcacca cctgcgcggc
      541 aacctgctgt ttccgctcgg gcgccatgcg caatgcctga gcgaacacga gcgcgcacgc
      601 cagcatgcgc ggcaggccgg atcgctcgaa gccgaggccg ccgcgctcgg cggcctcggc
      661 gatgcctact acctgcatgg ccacatgcgc tccgcccacg agcaattccg cgaatgcgtg
      721 gcgctgtcgc gcgcgcatgg cttcggccgg ctcgaagtcg cgaacctgcc gatggtcggc
      781 tggtcggtgc actatctcaa cgatctgcgc ggtgcggtcg aggtcggcca cgaggcgatc
      841 gaactcgccg cgcgggcctc gcagccgcgg gccgaactga tggcccgcat cctcgtcgcc
      901 tggatcgatg gcctgttgcg cgatcattcc gaagccgccg agcggcagat cgaagaggcg
      961 ttgcggctca gtcaggtgct cggctccagg cgattcgaaa cccagcttcg cggactgacc
     1021 gcgatgctgg ccttgcgtcg tggcgaccgt gatcttgcgc gcaccctggc ctggaacgcg
     1081 ctcgcgatct gccgcgaaca cgggatgggt cacatcggcc cgtggatcct cggcctctgc
     1141 gcgctggtcg agaccgacgt cgaagcgcgc cgtcatttgc tcgccgaggg cgagctgcaa
     1201 ctcgcacgag gctcggtcgg ccacaaccac atcctgttgc gcgacgtcgc gatcgacgtg
     1261 gcgctggaga ccggagattg ggtcgccgtg gaggagaact gcgcaaggat ccgcacctac
     1321 accgccgacg agcccttgcc gatgagcgat ttcatcatcg cgcgcggcct tgcgctcgcg
     1381 cgcttcggcc aaggtgagcg cagcaccgag ctgcagaccg ccctcatcgg cctgggcaca
     1441 gtcgcgacgc acgcggaatt gaatgcggcc atgcccgcca tcgagaacgc gcttgccgga
     1501 ttcggcgcgt cgcagcctgc ctgagacgac aagaccgccg atcaccgaca tggctgtccc
     1561 ttcaatcgat gccaagggcg ccgtgccgac gctggttctc gatacgaacg tcgtcctcga
     1621 ctggctgctc tttcgcgatg cgcgctgtgg cgtcctggcc gaagccatcc gcgtcggcca
     1681 ggtgcgctgg gtcgcttcgc cggcgatgcg cgcggaactg cagcacgtgc tcgcacgcgg
     1741 catccgcggc gactggacaa tcgatgcggg gtcgatcctg tacgcctggg accgctgggc
     1801 gacgatggtc gccgcgggcg acggaccggc gcggccgtcc ctgcgctgca ccgatgcgga
     1861 cgaccagaag ttcatcgatc tcgcgctgca ggtgcgggcg caggcgctgc tgagcagcga
     1921 tcgcgcgggg ctgaaactgc ggcgtcgtgc cgcgacgcac ggcctgcgca tcctcactgc
     1981 ggacgcatgg cagcctcagg caaccggagc gacggctgaa gccgtgtcgt cgggctgaac
     2041 aaaaaaagga cggcccgcgg gccgtccttc gatccgaagc ggaaaaggcc gattactggt
     2101 cgctgctctc cgttcccgca tcgaccgccg ccaattgcac ggccgccagt tcctcggctt
     2161 cctgcacggc gatggcacgg cgctcggcgt cgtccatcgc ttccttggcc ttgcgggcgt
     2221 cgtggaaggc catgccggtg ccggccggga tcaggcgccc gacgatgacg ttttccttca
     2281 ggccacgcag ctcgtcgcgc ttgcccatga tggcagcctc ggtgagcacg cgggtcgtct
     2341 cctggaacga cgccgccgag atgaagctgt cggtcgacag cgacgccttg gtgatgccga
     2401 gcagcacgtc ggcgtgcgtc gccggcagct tgccttcggc gagcgccttg tcgttgcggc
     2461 cgagaagctc cgagcgctcg acctgttcgc cgaggatgta gctcgtgtcg cccgggttgg
     2521 tgatctgcac gcggcgcagc atctggcgaa cgatcacctc gatgtgcttg tcgttgatct
     2581 tcacgccctg caggcggtac acgtcctgga cctcatcgac gatgtagcgc gcca
//
LOCUS       DASVHM010000404         6536 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1399911, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000404 DASVHM010000000
VERSION     DASVHM010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6536
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1399911"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1578)
                     /locus_tag="VF308_07640"
     CDS             complement(<1..1578)
                     /locus_tag="VF308_07640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEX7436562.1"
                     /translation="MAKPSRIPAPVSAPAHAFEHTRKVFWTASRRVGAFFSLPELAKT
                     YPNVKRLPVSVRIVLESVLRNCDGKKVTANHVAELAGWRPNAPRTDEIPFVVARVVLQ
                     DFTGVPLLADLAAMRNVAADMGKNPKTIEPLVPVDLVVDHSIMIDYFGAKDALDLNMR
                     LEFQRNHERYQFMKWGMQAFDTFGVVPPGFGIVHQVNLEYLARGVHRMAAPRGQTSVH
                     YPDSLVGTDSHTTMINGIGVVGWGVGGIEGEAAMLGQPVYLLTPDVVGFEFTGRLREG
                     VTATDLVLTVTEILRREKVVGSFVEFFGEGTAGLAVPDRATLANMAPEYGATMGFFPV
                     DAKTIDYFRGTGRTPDEIEALQAYFEAQEMFGVPQSGQIDYTRVVTLDLGSVAPSLSG
                     PRRPQDRIELGHVAEQFASLFSKAPAANGFNQPAAHLLTRHLVRAKDVRVEKAEHPVP
                     RTPSVEPGAPRAVEEMDANKPTLAAAQAEASSEQPPVADMTIGNGDVLIAAITSCTNT
                     SNPSVMIAAGLLAKKAVE"
     gene            complement(1718..2914)
                     /locus_tag="VF308_07645"
     CDS             complement(1718..2914)
                     /locus_tag="VF308_07645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEX7436563.1"
                     /translation="MHRRYAVRVLNQISPVGLKRLGADRYTVGKDVAEPDAMLVRSAD
                     MHAMDIPASVQAIGRAGAGTNNIPVKALSARGVAVFNAPGANANAVKELVLAGMLMAA
                     RNLAPALRFVATLDAGSPDIDKAVEEGKKAFAGFELAGHTLGIVGLGKVGCLVADAAI
                     RLGMDVLGYDPEITVDAAWSLPAQVKKAGSVAEVLKSAHFISLHVPLVDATRHLVNAR
                     NIGLMRPGAVLLNFSREGVVDEAGVLAALNAEGLAWYVCDFPSAATLAHERVIALPHL
                     GASTREAEDNCAVMVADQIRDYLEHGNVANAVNFPAVSMTRESAFRIAIANANVPNML
                     GQISTAMANAGLNIHNMVNKSRGDMAYTLVDVDSAVNDSVLEAIRAIEGVLSVRYLPQ
                     IAPAAE"
     gene            complement(2907..3989)
                     /gene="serC"
                     /locus_tag="VF308_07650"
     CDS             complement(2907..3989)
                     /gene="serC"
                     /locus_tag="VF308_07650"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019141741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEX7436564.1"
                     /translation="MTRVFNFSAGPAALPESVLRLAAEEMLDWHGSGMSVMEMSHRGK
                     EFISIHAEAESLLRELLAVPSNYKVLFLQGGAIGQNAIVPMNLLRGRTGADYVNTGEW
                     SKKSIKEAAHYCRVNVAASAEASGFTQVPKQDTWKLDPNAAYVHICANETIGGVEYHW
                     VPDIGAVPLVADMSSNILSRPIDVARYGLIYAGAQKNIGPAGLTIVIVRDDLIGQALP
                     ITPSAFDYKQQADNDSMLNTPPTYAIYIAGLVFRWIKDQGGLAAMETRNRSKAALLYD
                     HLDATSFYTSPVAREDRSLMNVPFKLRDAALDAAFLKGAEARHMLQLKGHRSVGGMRA
                     SIYNAMPVEGVKALVDYMKAFEAEHA"
     gene            4249..5643
                     /locus_tag="VF308_07655"
     CDS             4249..5643
                     /locus_tag="VF308_07655"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX7436565.1"
                     /translation="MLLGGCGGGGGHGGTPAGALDTIAPTVTLTAPADLSSGLTGTVA
                     LAATAADDVAVSGVDFQVDGAALGSSVAAAPFTATVDTSRFVAGQHVVLARARDAAGN
                     VSAWASATVQFGGSQTQPAGFTRNESWVTGLNAATAFAQAPDGRLFVAQQGGAPRVVK
                     GGTLLATPFLQLAVDSSGERGLIGVTLHPNFAVNGWVYVYYTTTEGGAHNRISRFTAA
                     GDVALAGSEAKLVDLPLLSGATNHNGGALHFGSDAKLYAGVGDNANGANAQILGSLFG
                     KLLRFDEDGGIPADNPFFASNAGLARAVWAYGLRNPFRFAVEPGTGRIHINDVGQNTW
                     EEIDLGVAGANYGWPNSEGPDNLGAGITAPLFTYKHSAAAPAGSGPGGFFTGFAIAGG
                     SFYPQAGPFPPAYRGSYFFADFVSRFVGRYDVANNAAYAFASLSGTPVDMLTGSDGAL
                     YVLTRAAIVRVSAP"
     gene            complement(5650..>6536)
                     /locus_tag="VF308_07660"
     CDS             complement(5650..>6536)
                     /locus_tag="VF308_07660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEX7436566.1"
                     /translation="KKGKKNVFSGRILEIEGLPDLKVEQAFELSDASAERSAAGCTVH
                     LNPAPIIEYITSNVALMKWMIAEGYAAARTLQRRIAAQEAWLADPKLLQPDADAEYAA
                     VIEIDLAEIHEPIVACPNDPDDVRTLSDVAGAKIDEVFIGSCMTNIGHFRAASKLLEG
                     KRDIPVKLWVAPPTKMDASRLTEEGHYGVLGSAGARMEMPGCSLCMGNQAQVREGATV
                     FSTSTRNFPNRLGKNANVYLGSAELAAICSKLGRIPTRAEYLADMGVLDAASGTVYQY
                     LNFDRIDSFKTAAEGVAA"
BASE COUNT          960 a         2216 c         2263 g         1097 t
ORIGIN      
        1 ctcgaccgcc ttcttcgcga gcaggccggc ggcgatcatc acgctcgggt tcgaggtgtt
       61 cgtgcacgac gtgatcgcgg cgatcagcac gtcgccgttg ccgatcgtca tgtcggcaac
      121 cggcggctgc tccgaactcg cttcggcctg tgcggcggcg agcgtcggct tgttcgcatc
      181 catttcttcg accgcgcgcg gcgcgccagg ctcgaccgac ggggttcgcg gcaccggatg
      241 ttccgccttc tcgacgcgca cgtccttggc gcgcaccaag tggcgcgtca gcagatgcgc
      301 ggctggctgg ttgaagccgt tcgcggccgg cgccttgctg aagagcgagg cgaattgctc
      361 cgcgacgtgg ccgagctcga tccggtcctg cgggcggcgc gggcccgaga gactgggcgc
      421 gacgctgcca aggtcgagcg tcacgacccg ggtgtagtcg atctgccccg actgcggcac
      481 gccgaacatc tcctgcgcct cgaagtaggc ctgcagcgct tcgatctcgt cgggcgtgcg
      541 gccggtgccc ctgaagtagt cgatcgtctt cgcatcgacc ggaaagaaac ccatcgtcgc
      601 gccgtattcg ggcgccatgt tggcgagcgt cgcccgatcg ggcactgcga ggccggccgt
      661 gccctcgccg aagaattcga cgaagctgcc gacgaccttc tcgcggcgca ggatctccgt
      721 gacggtgagc accaggtcgg ttgcggtcac gccctcgcgc aggcgtccgg tgaactcgaa
      781 cccgaccacg tccggcgtca gcaggtagac cggctgcccg agcatcgccg cttcgccctc
      841 gatgccgccg acgccccagc cgacgacgcc gatgccgttg atcatcgtcg tgtggctgtc
      901 ggtgccgacg agcgagtcgg ggtagtggac cgacgtctgt ccgcgcgggg cggccatccg
      961 gtgcacgccg cgcgccaggt attcgaggtt gacctggtgg acgatgccga atccgggcgg
     1021 cacgacgccg aacgtgtcga acgcctgcat gccccacttc atgaactggt agcgctcgtg
     1081 gttgcgctgg aactcgaggc gcatgttcag gtcgagcgcg tccttcgcgc cgaagtagtc
     1141 gatcatgatc gagtgatcga cgaccagatc gaccggcacc agcggctcga tcgtcttcgg
     1201 attcttgccc atgtcggcgg cgacgttgcg catcgccgcc aggtcggcga gcagcggcac
     1261 gccggtgaag tcctgcagca ccacgcgggc gacgacgaac gggatctcgt cggtgcgcgg
     1321 ggcgttcggg cgccagccgg cgagttcggc cacgtggttc gcggtgacct tcttgccgtc
     1381 gcagttgcgc agcaccgatt cgagcacgat gcgcaccgac accggcaggc gtttcacgtt
     1441 cgggtaggtc ttggccagtt cgggcagcga gaaaaacgcc ccgacccggc gcgaggcggt
     1501 ccagaacacc ttgcgcgtgt gttcgaacgc gtgcgccggc gcgctcacgg gagcgggaat
     1561 cctgcttggc tttgccatgg cggctctcct cgatgtgccg agacgattgt gcacggcggc
     1621 gtcgcggcgc gcgccctgcc gcacgcataa gcccatcagc gcatcggaca acgcgacacg
     1681 aggcccgcgc cgggcgggag tcggcggccc ggcgcgccta ctcggcggcc ggcgcgatct
     1741 gcggcaggta gcgcaccgag agcacgcctt cgatcgcccg gatcgcctcg agcacgctgt
     1801 cgttgacggc gctgtcgaca tccaccagcg tgtaggccat gtcgccgcgc gacttgttga
     1861 ccatgttgtg gatgttcagt ccggcgttcg ccatcgcggt cgagatctgg ccgagcatgt
     1921 tgggcacgtt cgcgttcgcg atcgcgatcc ggaatgccga ttcgcgcgtc atcgagaccg
     1981 ccggaaagtt cactgcgttg gcgacgttgc cgtgctcgag gtagtcgcgg atctggtcgg
     2041 ccaccatcac ggcgcagttg tcctcggctt cgcgcgtcga ggcgccgagg tgcggcagcg
     2101 cgatgacgcg ctcgtgagcg agggtcgcgg cgctcggaaa gtcgcacacg taccaggcca
     2161 ggccctcggc attcagggcg gcgagcacgc cggcttcgtc gacgacgcct tcgcgcgaga
     2221 agttcagcaa caccgcgccg gggcgcatca gcccgatgtt gcgggcgttg acgaggtggc
     2281 gcgtcgcatc gaccaggggc acgtgcagcg agatgaagtg ggcgctcttc aggacttcgg
     2341 cgacgctgcc cgcctttttc acctgcgccg gcaggctcca ggccgcgtcg acggtgatct
     2401 cggggtcgta gccgagcacg tccatgccga ggcggatcgc cgcatcggcg accaggcagc
     2461 cgaccttgcc gaggccgacg atgccgagcg tgtgaccggc gagctcgaac ccggcaaagg
     2521 ccttcttgcc ttcctcgacc gccttgtcga tgtcggggga gccggcatcg agcgtggcca
     2581 cgaagcgcag cgcgggggcg aggttgcgcg cggccatcag catgccggcg agcaccagct
     2641 ccttgaccgc gttggcgttg gcccctggcg cgttgaacac cgcgacgccg cgcgcgctca
     2701 gcgctttcac cgggatgttg ttggtgcctg cgccggcgcg gccgatggcc tgcacgctcg
     2761 ccgggatgtc catcgcgtgc atgtcggccg aacgcaccag catcgcatcg ggttcggcca
     2821 cgtccttgcc gaccgtgtag cggtcggcgc caaggcgctt cagcccgacc ggcgagatct
     2881 ggttgagcac ccggaccgca tagcgcctat gcatgctcgg cctcgaacgc cttcatatag
     2941 tcgaccagcg ccttcacgcc ttcgaccggc atcgcgttgt agatcgaggc gcgcatgccg
     3001 ccgaccgagc gatgcccctt cagctgcagc atgtggcgcg cctcggcgcc cttgaggaac
     3061 gcggcgtcga gggccgcgtc gcgcagcttg aacggcacgt tcatcagcga acggtcttcg
     3121 cgcgccaccg ggctcgtgta gaaagaggtc gcgtcgagat ggtcgtagag cagggccgct
     3181 ttcgagcggt tgcgcgtctc catcgcggcc aggccgccct gatccttgat ccagcggaag
     3241 accagcccgg cgatgtagat cgcatacgtc ggcggcgtgt tgagcatcga gtcgttgtcg
     3301 gcctgctgct tgtagtcgaa ggccgacggc gtgatcggca gggcctgccc gatcaggtcg
     3361 tcgcggacga tcacgatcgt gagcccggcc gggccgatgt tcttctgcgc cccggcatag
     3421 atgagcccgt agcgcgccac gtcgatcggg cgcgacagga tgttcgacga catgtcggcc
     3481 acgagcggca cggcgccgat gtcgggcacc cagtggtatt cgacgccgcc gatcgtctcg
     3541 ttggcgcaga tgtggacata ggcggcgttc gggtcgagct tccaggtgtc ctgtttcggc
     3601 acctgcgtga agccgctcgc ctcggcgctg gccgcgacgt tcacccggca atagtgcgcc
     3661 gcttccttga tcgatttctt cgaccattcg ccggtattga cgtagtcggc gccggtgcgg
     3721 ccgcgcagca ggttcatcgg cacgatcgcg ttctggccga tcgcgccgcc ctgcaggaac
     3781 agcaccttgt agttcgaggg cacggcgagg agctcgcgca gcaggctctc ggcctcggca
     3841 tggatcgaga tgaattcctt gccgcgatgg ctcatttcca tcaccgacat gccggagccg
     3901 tgccagtcga gcatctcctc ggccgccagg cgcaggaccg actcgggcag cgcggccggg
     3961 ccggcgctga aattgaaaac acgtgtcatg agggctccgg atcgacggct gtcagacccc
     4021 cggacggcgt ccggaggcgg ggaagaggat tatccgatgc gatgcgcgcg gctcgcaccc
     4081 tgccacaaaa aatcgctgcc cgaagggaac gcggccttgt acaactcctc acagcgatcg
     4141 cccccgcgcg gccagaattc gcgacgcttc gacgaggcgc aaccccgcgc aggaggcccg
     4201 catgaggatc gaaccctgtg gtgtcggctc gcatccgccg ccgtggcgat gctgctcggg
     4261 gggtgcgggg gtggcggggg ccacggcggc acgcccgccg gggcgctcga cacgatcgca
     4321 ccgaccgtga ccttgacggc gccggccgac ctctccagcg gcctgaccgg gaccgtcgcg
     4381 ctcgccgcga cggccgccga tgacgttgcg gtgagcggcg tggattttca ggtcgacggt
     4441 gcggcgctgg gcagcagcgt cgccgcggcg ccgttcacgg cgaccgtcga cacgagccgg
     4501 ttcgtggcgg gccagcatgt cgtgctagcc cgcgcacgcg atgcggccgg caatgtgtcg
     4561 gcgtgggcga gtgcgacggt ccagttcggc ggcagccaga ctcaaccggc cggcttcacg
     4621 cgcaacgaaa gctgggtcac cggcttgaac gctgcgaccg cgttcgcgca ggcgccggac
     4681 gggcgcctgt tcgtcgcgca gcagggcggg gcgccgcgcg tcgtcaaggg cggcacgctg
     4741 ctcgcgacgc cgttcctgca gctcgcggtc gattcgagcg gcgagcgcgg cctgatcggc
     4801 gtgacgctgc atccgaactt cgccgtcaac ggctgggtct acgtctacta cacgaccacc
     4861 gagggcggcg cgcacaaccg catcagccga ttcaccgcgg cgggcgatgt cgcgctcgcg
     4921 ggcagcgagg ccaagctggt cgacttgccc ctgctctcgg gcgcgaccaa ccacaacggc
     4981 ggcgcgctcc acttcggcag cgacgccaag ctctacgccg gcgtcggcga caacgcgaac
     5041 ggggccaacg cgcaaatcct cggcagcctg ttcggcaaat tgctgcgctt cgatgaagat
     5101 ggcggcatcc ccgccgacaa cccgttcttc gcttcgaacg cgggcctggc gcgtgccgtc
     5161 tgggcttatg ggctgcgcaa cccgttcagg ttcgcggtcg agccgggcac cggccgcatc
     5221 cacatcaacg acgtcggcca gaacacctgg gaagagatcg atctcggtgt ggccggggcg
     5281 aactacggct ggccgaattc cgaagggccc gacaacctgg gcgccgggat cacggcgccg
     5341 ctcttcacgt acaagcacag cgccgccgcg cctgccggct cggggccggg cggattcttc
     5401 accggcttcg cgatcgccgg cggcagcttc tacccgcagg ccgggccgtt cccgccagcg
     5461 taccggggca gctacttctt cgccgacttc gtcagccgct tcgtcgggcg ctacgacgtc
     5521 gcgaacaacg ccgcgtacgc gttcgccagc ctttcgggga ctccggtcga catgctgacc
     5581 gggtccgacg gcgccctcta cgtgctgacg cgcgccgcga tcgttcgcgt cagcgcgccg
     5641 tgatccgcat caggccgcga ccccctcggc cgccgtcttg aacgagtcga tccggtcgaa
     5701 gttcaggtat tgatagaccg tgccgctggc cgcgtcgaga acgcccatgt cggccaggta
     5761 ctcggcgcgc gtcgggatgc gcccgagctt cgaacagatc gccgcgagct cggccgagcc
     5821 gaggtagacg ttggcgttct tgccgaggcg gttcgggaag ttgcgcgtgc tcgttgaaaa
     5881 caccgtcgcg ccttcgcgca cctgcgcctg gttgcccatg cacaggctgc agcccggcat
     5941 ctccatgcgc gcaccggcgc tgccgagcac gccgtagtgg ccttcctcgg tgaggcggct
     6001 cgcatccatc ttggtgggcg gcgcgaccca gagcttgacc gggatgtcgc gcttgccctc
     6061 gagcagcttg ctcgccgcgc ggaagtggcc gatgttggtc atgcagctgc cgatgaacac
     6121 ttcgtcgatc tttgcgccgg cgacgtccga cagcgtcctc acgtcatcgg gatcgttcgg
     6181 gcaggcgacg atcggttcgt gaatctcggc cagatcgatt tcgatcacgg ctgcgtattc
     6241 ggcatcggca tcgggctgga gcagcttcgg atcggcgagc caggcctcct gcgcggcgat
     6301 gcggcgctgc agcgtgcgcg ccgccgcgta gccctcggcg atcatccatt tcatcagcgc
     6361 gacgttgctg gtgatgtatt cgatgatcgg ggccggattg aggtgcacgg tgcaccctgc
     6421 ggcgctgcgc tcggccgacg cgtcggagag ctcgaacgcc tgttcgacct tcagatcggg
     6481 caggccctcg atctcgagga tgcggccgct gaagacgttc ttcttgccct tcttct
//
LOCUS       DASVHM010000405         2002 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_316294, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000405 DASVHM010000000
VERSION     DASVHM010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316294"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..678)
                     /gene="purH"
                     /locus_tag="VF308_07665"
     CDS             complement(<1..678)
                     /gene="purH"
                     /locus_tag="VF308_07665"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902768.1"
                     /note="involved in de novo purine biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEX7436567.1"
                     /translation="MQALISVSDKSGVVDFARELSRLGVRLLSTGGTAKLLAEAGLAV
                     TEVADHTGFPEMLDGRVKTLHPKIHGGLLARRDVPAHMAALREHGIAPIDLLVVNLYP
                     FEATVARPGCTLDDAIENIDIGGPAMVRSAAKNWKDVAVLTDASQYPTVLEELRAGGA
                     VTEVTRFALAVAAFNRISNYDAAISDYLSALAFDAGGDHKRAEFPAQVNGRFVKLQDL
                     RYGENPHQ"
     gene            complement(692..931)
                     /locus_tag="VF308_07670"
     CDS             complement(692..931)
                     /locus_tag="VF308_07670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019427577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
                     /protein_id="HEX7436568.1"
                     /translation="MSNKKHIEECIRESLESYFKDLRGVDPTAMYEMILRVVEKPLLD
                     VVMTQAEGNQSRAAEWLGINRNTLRRKLLEHKLIK"
     gene            complement(945..1979)
                     /gene="dusB"
                     /locus_tag="VF308_07675"
     CDS             complement(945..1979)
                     /gene="dusB"
                     /locus_tag="VF308_07675"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013543593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HEX7436569.1"
                     /translation="MRIGHIQLANRLFAAPMAGVTDRPFRKLCRRLGAGYAVSEMVTS
                     RKDLWASLKTSRRADHTGEAAPISVQIAGTDAAMMAEAAAYNIERGAQIIDINMGCPA
                     KKVCNTWAGSALMRDEPLALEIAEAVVAACAPHNVPVTLKMRTGWCESERNAVRLARA
                     AESAGIAMVTVHGRTREQGYKGAAEYDTVAAVKAALRIPVVANGDIDTPEKARAVFLA
                     TGADAIMIGRAAQGRPWIFREIAHFLETGAILAPPEVGEAKGWLLDHLDDHYRLYGEH
                     TGVRSARKHIGWAVETLPGGAHFRAKMNLLETCAEQVAAVADWFDELATRSRRLPAMS
                     AAGAGDPMLQ"
BASE COUNT          281 a          673 c          676 g          372 t
ORIGIN      
        1 ctggtgcggg ttctcgccat agcgcagatc ctgcagcttg acgaagcggc cattgacctg
       61 ggccgggaac tcggctctct tgtgatcgcc gccggcgtcg aaggccagcg ccgagaggta
      121 gtcgctgatc gccgcatcgt agttcgagat ccggttgaat gcggcgaccg cgagcgcgaa
      181 gcgggtcact tcggtgacgg cgcccccggc ccttagttct tcgagaaccg tcgggtactg
      241 cgacgcgtcg gtcaggaccg cgacgtcctt ccagttcttc gccgccgagc gcaccatcgc
      301 cgggccgccg atgtcgatgt tctcgatcgc gtcgtcgagc gtgcatcccg gtcgtgcgac
      361 cgtcgcctcg aatgggtaga ggttgacgac gaggaggtcg atcggcgcga tgccgtgttc
      421 gcgcagcgcc gccatgtggg ccgggacgtc ccggcgcgcg agaagtccgc cgtgaatctt
      481 cggatgcagc gtcttgacgc gaccgtcgag catctccggg aatccggtgt ggtccgcgac
      541 ctcggtgacc gcgaggccgg cctcggcgag cagcttcgcg gtgccgccgg tcgagagcag
      601 ccggacgccg aggcgcgaga gttcgcgcgc gaagtcgacg accccgctct tgtcggatac
      661 ggagatcaac gcttgcatcg ggggcccgtc gtcacttgat cagcttgtgc tcgagcaact
      721 tcctgcgcag cgtgttgcgg ttgatgccga gccattccgc cgcacggctc tggttgccct
      781 cggcctgcgt catgaccacg tcgagcaagg gcttttcgac cactcgcagg atcatctcgt
      841 acatcgccgt cgggtcgacc ccgcgcaggt ccttgaagta gctctcgagg ctttcgcgga
      901 tgcattcttc gatgtgcttc ttgttgctca tgctcgtgct cgactcattg aagcatcgga
      961 tcgccggcgc ccgccgcgct catggcgggc agccgccggc tgcgggtcgc cagttcgtcg
     1021 aaccagtcgg cgacggcggc gacctgctcc gcgcaagtct ccaggaggtt catcttcgcg
     1081 cgaaaatggg ccccgccagg cagtgtttcc accgcccagc cgatgtgttt gcgcgcactg
     1141 cgcacaccgg tgtgctcgcc gtagaggcga tagtggtcgt cgagatggtc caacagccag
     1201 cccttggctt cgccgacttc gggcggcgcc aagatggcgc cggtttcgag gaagtgggcg
     1261 atctcgcgaa agatccaggg ccgcccctgg gccgcgcggc cgatcatgat cgcgtcggcc
     1321 ccggtagcaa ggaacacggc gcgcgccttt tccggcgtgt cgatatcccc gttggcgacg
     1381 accgggatcc gcagcgcggc tttcaccgcc gcgaccgtgt cgtattccgc cgcgcccttg
     1441 tagccttgtt cgcgcgtgcg cccatggacc gtcaccatcg cgatgccggc gctttcggcg
     1501 gcgcgggcca ggcgcaccgc attgcgttcg gactcgcacc agccggtgcg catcttcagc
     1561 gtcaccggca cgttgtgcgg tgcacaggcc gccaccaccg cttcggcgat ctcgagcgcg
     1621 agcggctcgt cgcgcatcag cgccgagccg gcccaggtgt tgcagacctt ctttgccggg
     1681 cagcccatgt tgatgtcgat gatctgggcg ccgcgctcga tgttgtaggc cgcggcttcg
     1741 gccatcatcg cagcgtcggt gccggcgatc tgcaccgaga tcggcgccgc ctcgcccgtg
     1801 tgatcggcgc ggcggctggt cttcaggctg gcccagagat ccttgcgcga ggtcaccatc
     1861 tcgcttaccg cataaccggc gcccaggcgc ctgcaaagct tgcggaacgg ccggtcggtg
     1921 acccctgcca tcggcgccgc gaacagccgg ttcgccagct ggatgtggcc gatgcgcatg
     1981 agggtcttcg gggtgctgaa aa
//
LOCUS       DASVHM010000406         3328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_172872, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000406 DASVHM010000000
VERSION     DASVHM010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172872"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..1743
                     /locus_tag="VF308_07680"
     CDS             76..1743
                     /locus_tag="VF308_07680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010399965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEX7436570.1"
                     /translation="MRTSLARTSVIGLTALFVFLPLGLIFYQSLLDAPFFAPHRVGLG
                     AFSFIFADDDFWDALRNSLVIAAAMGLIAVPLGGILAFLMIRTDLPGRGWIEPLLLIP
                     VFVSPMVLGFGYVVSAGPVGFYSVWAKELFGGVPWNVYSLTGIAVIAGLTHVPHVYLY
                     SSSALKSLGSDVEEAARMAGSTPFQVARDVSLPMVTPSLLFSGVLVFFLGFEIFGLPL
                     VLGDPEGHLVLATYLYKLTNKLGTPSYHLMAAVAVCIVAMTFPLVMLQRVLLKNAGKY
                     VTVKGKAGRQRPLPLGGWRWVAAAILVFWLFVTVVVPLSGIALRALVTNWGEGVRLAD
                     VLTLDNFRDVLQQPTLVRGIVNTVLIGIVGGGLAVVCYTAVGLTTHRKNDVWSRVVDY
                     MVLVPRAVPGLLAGLAFLWVFLFFPPLAPLRSTIFSLWIAYTVVWLAYGMRLVSSSLL
                     QVGPELEEAARSAGASPGRVTRDVTLPLIRYGLLASWLLVFMIFEREYSTGVYLLGPG
                     TEVIGSLLVSLWGTGAAESVAALSFINVVLVAIGLTVALRFGVKLHD"
     gene            1736..2821
                     /locus_tag="VF308_07685"
     CDS             1736..2821
                     /locus_tag="VF308_07685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011547833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436571.1"
                     /translation="MTDTANTTGAANKLRVDDLHLSYGDNAILKGVSMQLAQGEVVSL
                     LGPSGSGKTTLLRAVAGLEAAHRGTIRIEDRPVFDAATRVELPAEKRNLGLVFQSYAL
                     WPHRTVFENVAYGLKLRKVASAEVRQRVESALGNLGLGALGDRLPHQLSGGQQQRVAI
                     ARALVYNPPVILMDEPLSNLDAKLREEARAWLRELILKMRLSALVVTHDQNEAMAMSD
                     RILLLNNGVIEQQGTPQELYGQPRTLFVADFMGSNNKVEGKVVERRGDAALLAGDGWQ
                     LWGDARGPAAVGGAATGMVRLERVRLASGEGANTLKLPLVTSMFLGDRWEYLFNRGDL
                     RLRAYGSRALAPGEQWLEIEPESFWIF"
     gene            2848..3249
                     /locus_tag="VF308_07690"
     CDS             2848..3249
                     /locus_tag="VF308_07690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018904550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein"
                     /protein_id="HEX7436572.1"
                     /translation="MDKHRLDKWLWAARFYKTRALAAEDIAKGRVSVNEQVAKASREL
                     RQGDVVELRQAGSSRTLVVKALSRLRGPAPTAQALYEETPESIAQRIARAAERKLNPE
                     PAQTIEQGRPTKRDRRQLADWNRWSASAEPD"
BASE COUNT          463 a         1183 c         1119 g          563 t
ORIGIN      
        1 ggctcgactt catcaagcag tggcaggcag cgatgaaggc cggcaagtaa gcgtcggcgg
       61 cgcgtcgttc cgtccatgcg aaccagtctc gcccgcacca gcgttatcgg cctgacggcg
      121 ctcttcgtct tcctgcccct cggcctgatc ttctatcaga gcctgctcga cgcgccgttc
      181 ttcgcaccgc accgcgtcgg cctcggcgcg ttcagcttca tcttcgccga cgacgatttc
      241 tgggacgcgc tcaggaactc gctggtgatc gccgccgcga tggggctgat cgccgtgccg
      301 ctcggcggca tcctggcctt cctgatgatt cgcaccgacc tgcccgggcg cggctggatc
      361 gagccgctgc tgctgatccc ggtgttcgtc tcgccgatgg tgctcggctt cggctacgtc
      421 gtctcggccg ggccggtcgg cttctactcg gtctgggcca aggagctctt cggcggcgtg
      481 ccctggaacg tctactcgct cacaggcatc gccgtcatcg ccgggctgac ccacgtgccc
      541 cacgtctacc tctattcgtc gtcggcgctg aagagcctcg gctccgacgt cgaggaggcg
      601 gcgcggatgg ccggatcgac gccgttccag gtcgcccgcg acgtcagtct gcctatggtc
      661 acgccgtcgc tgctgttctc gggcgtgctc gtcttcttcc tcggcttcga gatcttcggc
      721 ctgccgctcg tcctcggcga tccggagggc catctcgtgc tggccaccta cctctacaag
      781 ctcaccaaca agctcggcac gccgtcctac cacctgatgg cggcggtggc ggtgtgcatc
      841 gtcgcgatga cgttcccgct cgtcatgctg cagcgcgtcc tgctcaagaa cgccggcaag
      901 tacgtcaccg tcaagggaaa ggcggggcga cagcggccgc tgccgctcgg tggctggcgc
      961 tgggtcgccg cggcgatcct ggtcttctgg ctcttcgtca cggtggtcgt gccgctctcg
     1021 ggaatcgcct tgcgcgctct cgtcaccaac tggggggaag gcgttcgcct cgccgacgtc
     1081 ctgacgctcg acaacttccg cgacgtgctg cagcagccga cgctcgttcg cggcatcgtc
     1141 aacacggtgc tgatcggcat cgtcggcggc ggcctggcgg tggtctgcta caccgcggtc
     1201 ggcctgacga cgcaccgcaa gaacgatgtc tggtcgaggg tcgtcgacta catggtgctg
     1261 gtgccgcgcg ccgtgccggg ccttctcgcc ggcctcgcgt tcctgtgggt gttcctgttc
     1321 tttccgccgc tggcgccgct ccgttcgacg atcttcagcc tctggatcgc ctacacggtc
     1381 gtctggctcg cctacggcat gcgcctggtg tcgagctcgc tgctccaggt cggccccgag
     1441 ctcgaggagg cggcgcgcag cgccggcgcg agcccgggcc gcgtcacccg cgacgtcacc
     1501 ctgccgttga tccgctacgg cctgctcgcc agctggctgc tcgtcttcat gatcttcgag
     1561 cgcgagtatt cgaccggggt ctacctgctc ggccccggca ccgaggtgat cggctcgttg
     1621 ctggtctcgc tctggggaac cggtgccgcc gagtcggtcg ctgcgctgtc gttcatcaac
     1681 gtcgtgctgg tcgcgatcgg cctgacggtc gccctgcgtt tcggagtcaa gcttcatgac
     1741 tgacacggcc aacacgaccg gtgcagcgaa caagctgcgc gtcgacgacc tgcacctctc
     1801 ctacggcgac aacgcgatcc tgaagggcgt gtcgatgcag ctcgcgcagg gcgaggtcgt
     1861 ctcgctgctc ggcccgtcgg gaagcggcaa gacgactttg ctgcgcgccg tcgccgggct
     1921 cgaggcggcg caccgcggca cgatccggat cgaggaccgc ccggtcttcg acgccgcgac
     1981 cagggtcgag ctgcccgccg agaagcgcaa cctcggcctg gtcttccagt cctacgcgct
     2041 ctggccgcac cggaccgtgt tcgagaacgt cgcctacggt ctcaagctgc gcaaggtggc
     2101 aagcgccgaa gtgcgccagc gcgtcgaatc ggcgctcggc aacctcggcc tcggcgccct
     2161 cggcgaccgg ctgccgcacc agctctcggg cggccagcag cagcgcgtcg cgatcgcccg
     2221 cgccctagtc tacaacccac ccgtgatcct catggacgag ccgctctcca acctcgacgc
     2281 caagctgcgc gaggaagcgc gggcgtggct gcgcgagctg atcctgaaga tgcgcctctc
     2341 ggcgctggtc gtcacgcacg atcagaacga ggcgatggcg atgtcggacc ggatcctcct
     2401 gctcaacaac ggtgtcatcg agcagcaggg gacgccgcag gagctctacg gccagccgcg
     2461 caccctgttc gtcgccgact tcatgggcag caacaacaag gtcgaaggca aggtcgtcga
     2521 gcggcgcggc gacgcggcgc tgctcgctgg cgacggctgg cagctgtggg gcgacgcgcg
     2581 cggcccggct gccgtcggcg gcgcggcgac cgggatggtc aggctcgagc gggttcgcct
     2641 ggcgagcggc gaaggcgcca acaccctgaa gctgccgctg gtgacctcga tgttcctcgg
     2701 cgaccgctgg gaatatctct tcaaccgagg cgacctgcgc ctgcgcgcct acgggtcgcg
     2761 cgcgctcgcg ccgggcgagc agtggctcga gatcgagccg gagagcttct ggatcttctg
     2821 accgccccgc gcggcaccgc cacggccatg gacaagcatc gcctcgacaa gtggctctgg
     2881 gcggcccgct tctacaagac gcgcgccctc gccgccgaag acatcgccaa ggggcgggtc
     2941 tcggtgaacg agcaggtcgc caaggcctcg cgcgagctgc gccaaggcga cgtcgtcgag
     3001 ctgcgccagg ccggatcgag ccggacgctc gtcgtcaagg cgctgagccg cctgcgcggg
     3061 ccggcgccga cggcgcaggc cctctacgag gagacgccgg agagcatcgc gcagcggatc
     3121 gcgcgtgcgg cggagcgcaa gctcaacccc gagccggcgc agacgatcga gcagggccgg
     3181 ccgaccaagc gcgatcggcg ccagctcgcc gactggaacc gctggagcgc ctcggccgag
     3241 ccggactgag aaagtcgctc gcgttcggca aagtccgccc ttgaaacccc ggggatgcgc
     3301 ctcacgtcct tcggatgaac gcgaacga
//
LOCUS       DASVHM010000407         2440 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_102358, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000407 DASVHM010000000
VERSION     DASVHM010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2440
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102358"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /locus_tag="VF308_07695"
     CDS             <1..331
                     /locus_tag="VF308_07695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX7436573.1"
                     /translation="GPYPHLIAWYERVQALGHGRPTPLSSEDALEVARRATSRAAASV
                     LPGQAFETGAEVTVTPTDYAADPVPGRLVGLDADEVVIAREDKRVGQVQVHFPRIGYQ
                     VKSTAQA"
     gene            367..1275
                     /locus_tag="VF308_07700"
     CDS             367..1275
                     /locus_tag="VF308_07700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7436574.1"
                     /translation="MKNFKGRTAVITGAGSGFGLEVARIAARKGMKLVLADIQQDALD
                     RAAAELRALGADVLASRLDVSKAAEVEALGGAVFARFGAPHFVFNNAGIGAGGLIWEN
                     TLKDWEWVLGVNLMGVVHGVRVFTPMMLEAARKDPAYEGHVVSTASMAGILNAPNMGV
                     YNVSKHAVVSLSETLYQDLRLVTDQIGASVLCPFFVPTGITASDRNRPDALRETAAPT
                     RSQLIGRAMSEKAVSSGKVSAAQVARFVFEAIENDRFYIYSHPKSLASVQTRLEDIMQ
                     GRNPTDPFAGKPEIGASLKAALRAAT"
     gene            1283..1774
                     /locus_tag="VF308_07705"
     CDS             1283..1774
                     /locus_tag="VF308_07705"
                     /inference="COORDINATES: protein motif:HMM:NF016178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HEX7436575.1"
                     /translation="MDEAPEPGRAATIEPFWLAYQRACGVEVEGFSAAALGHTRLLAD
                     AFAELVASGVKRGHATLLRDFEKDLEPLPQPGDHLVVLDSAGEPRAIVRTSHVEKRRF
                     NEIDDAFAFEAGEGDLTLRWWLTAHRQDFAERAEAEGFEAHERMELVLEYFEMVWPPP
                     GGV"
     gene            complement(1793..>2440)
                     /locus_tag="VF308_07710"
     CDS             complement(1793..>2440)
                     /locus_tag="VF308_07710"
                     /inference="COORDINATES: protein motif:HMM:NF018473.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1223 domain-containing protein"
                     /protein_id="HEX7436576.1"
                     /translation="VTATAEIYTSEGCNSCPQADRWLSRLKTDPDVVALAFHVDYWDR
                     LGWKDRFSSPTYTQRQSQQLSSNGARFSYTPQVVIDGTDRKDWPGIAAPLTSRGAAAA
                     PVELTLAREGQRITATVAPLATAPKRLAAYWAVTEQGHVSAVQAGENEGVTLKHDYVV
                     RAYRPVTAWLPRAEAPETLVYDLAGAADPAHPRQVNLVVVNADDGRPVQALKLGC"
BASE COUNT          379 a          824 c          857 g          380 t
ORIGIN      
        1 cggcccctat ccgcacctga tcgcctggta cgagcgcgtg caggcgctcg gtcatggcag
       61 gcccacgccg ctgtcgagcg aggatgcgct cgaggtggcg cgccgcgcga cgtcccgcgc
      121 cgccgcttcg gtgctgccgg gacaggcctt cgagaccggt gctgaggtca cggtgacacc
      181 gaccgattat gccgccgatc ccgtgcccgg tcgtctcgtc ggcctcgatg ccgacgaggt
      241 ggtgatcgcc cgcgaggaca agcgcgtcgg tcaggtgcag gtgcactttc cgcgcatcgg
      301 ctaccaggtc aagtcgaccg cgcaggcctg acgcgacatt cccttcgaat cgaaagcgag
      361 agttccatga agaatttcaa aggccgcacc gcggtcatca ccggcgccgg ttccgggttc
      421 ggcctcgaag tggcgcggat cgccgcgcga aagggcatga agctcgtgct cgccgatatc
      481 cagcaggacg cgctcgaccg cgccgccgcc gaattgcggg cgctcggggc cgacgtgctg
      541 gcctcgcgcc tcgacgtctc gaaagccgcc gaggtcgagg cgctgggtgg cgccgtgttc
      601 gcgcgtttcg gcgcgcccca cttcgtcttc aacaacgccg gcattggcgc gggcgggttg
      661 atctgggaga acacgctgaa ggactgggag tgggtcctcg gggtcaacct aatgggcgtc
      721 gtgcacggcg tgcgcgtctt cacgccgatg atgctcgagg ctgcccgcaa ggacccggcc
      781 tacgagggcc atgtcgtcag caccgcgtcg atggccggca ttctgaacgc gcccaacatg
      841 ggtgtgtaca acgtcagcaa gcatgccgtg gtctcgctga gcgaaacgct ctaccaggac
      901 ctgcgcctcg tcaccgacca gatcggcgcg tcggtgctgt gcccgttctt cgtcccgacg
      961 ggcatcaccg ccagcgaccg caatcgcccc gacgcactgc gcgaaacagc cgcgccgacc
     1021 aggagccagc tgatcggccg ggccatgagc gagaaggcgg tgagcagcgg caaggtcagc
     1081 gcggcccagg tggcccgctt cgtcttcgag gcgatcgaga acgaccgctt ctacatctac
     1141 agccatccga agtcgctggc gagcgtgcag acgcggctcg aagacatcat gcagggccgc
     1201 aacccgaccg acccgttcgc gggcaagccc gagatcggcg ccagcctgaa ggcggcgctg
     1261 cgcgctgcca cctgaccggg tcgtggacga agcgcccgag cccggccggg cggcaaccat
     1321 cgagccgttc tggctcgcct accagcgcgc gtgcggcgtc gaggtcgagg gcttttcggc
     1381 agcggcactc ggtcacaccc ggctccttgc tgacgcgttc gcggaactgg tcgcatcggg
     1441 tgtgaagcgc ggccatgcga ccttgctgcg cgacttcgaa aaggatctcg aaccgctgcc
     1501 gcagccgggc gatcatctcg tcgtgctcga cagcgccggc gaaccgcgcg cgatcgtgcg
     1561 cacgagccac gtcgagaagc gccgcttcaa cgagatcgac gacgcgttcg cgttcgaagc
     1621 cggagagggc gacctcacct tgcgctggtg gctcaccgcg caccggcagg actttgccga
     1681 gcgcgccgag gccgagggat tcgaagccca cgagcgaatg gaactcgtgc tcgagtactt
     1741 cgaaatggtc tggcctcccc caggcggcgt gtgaaccggc tccgaccccc gttcagcagc
     1801 cgagcttgag tgcctgcacc gggcggccgt cgtcggcgtt cacgacgacg aggttgacct
     1861 gcctcggatg ggccgggtcg gcggcgccgg ccaggtcgta gaccagggtt tcgggtgcct
     1921 cggcgcgggg cagccaggcc gtgaccggcc ggtacgcgcg caccacgtag tcgtgcttca
     1981 gggtcacgcc ctcgttctcg ccggcttgca ccgcgctgac atggccctgc tcggtcacgg
     2041 cccagtaggc ggcgaggcgc ttcggcgcgg tcgcgagcgg tgcgacggtc gcggtgatgc
     2101 gctggccttc gcgcgccagg gtcaactcga ccggggccgc ggccgcgccg cgtgacgtga
     2161 ggggcgccgc gatgcccggc caatccttgc gatcggtgcc gtcgatgacg acctgcggcg
     2221 tgtagctgaa tcgggcaccg ttgctcgata gctgctgcga ctggcgctgc gtgtaggtcg
     2281 ggctcgagaa acgatccttc cagccgagcc gatcccagta gtcgacgtgg aaggcgaggg
     2341 cgacgacatc ggggtcggtc ttcaatcggg agagccaccg atcggcctgc ggacaggagt
     2401 tgcagccttc tgaggtgtag atctcggcgg tcgccgtcac
//
LOCUS       DASVHM010000408         4774 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_897392, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000408 DASVHM010000000
VERSION     DASVHM010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4774
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_897392"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VF308_07715"
     CDS             complement(<1..285)
                     /locus_tag="VF308_07715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436577.1"
                     /translation="MLCLLACGVAGASCPPGTTTKVALQILKQVEWKVADDNARQALA
                     LALLDCLASPDPVLRDEIAFDAISHWTRGRALTPATLQSIRTTLLPRLLPD"
     gene            362..1135
                     /locus_tag="VF308_07720"
     CDS             362..1135
                     /locus_tag="VF308_07720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007867302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEX7436578.1"
                     /translation="MSSRWLGILVSLLFALPALAEEASSSRLDAVQKSGRLRVCTPGD
                     YTPFALQKQEGMFEGLDVDLVQTAAKALGAEAVFVKSAWPTLMKDFVEKCDVAVGGIS
                     VTLERQKTAFFSQAYMVNGKAPITRCENVAKFQTVADIDKPSVTVIENPGGSNERFAR
                     ANFKSAKIVIYNDNTTIFDEILKGNADVMISESAETIVQQRLRPGLCAVNPDKPLQYG
                     EMAWLLPRGDVAFKAWVDQWLHLAKASGEYDRIAARWLR"
     gene            complement(1334..1576)
                     /locus_tag="VF308_07725"
     CDS             complement(1334..1576)
                     /locus_tag="VF308_07725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436579.1"
                     /translation="MEALDPVTWRSRCAQRMAELDPDLTRNEAERLAKDVHAFERTRA
                     MEPEAAAEFVSIEMSRPERAPFERRSASREREAGAA"
     gene            complement(1597..1827)
                     /locus_tag="VF308_07730"
     CDS             complement(1597..1827)
                     /locus_tag="VF308_07730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436580.1"
                     /translation="MKHLTLVALGAAVIMTGCVAYPDDTYHDRGDRGAYRDNDRRYDR
                     DDRRDEQRERDRDRKDRDNDRDGDRRDWPARP"
     gene            complement(2117..2563)
                     /locus_tag="VF308_07735"
     CDS             complement(2117..2563)
                     /locus_tag="VF308_07735"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HEX7436581.1"
                     /translation="MDLVDQLSPRGFDCVCGNLRMAARAVSSVYDRHLAASGVQSSQM
                     AVLWAVSNAQGMTVKELAARIAMHETTLIRNLRVLEREGWVALEVGADDRRQRIPSLT
                     RAGRAVFAKALLGWKKAQAEVARLLDDKVAETNRKLVRLTRAIWND"
     gene            2850..>4774
                     /locus_tag="VF308_07740"
     CDS             2850..>4774
                     /locus_tag="VF308_07740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005668536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX7436582.1"
                     /translation="MRKTRLCTALMVACGGVMLSAGQAALAQNTTTLERVEITGSNIR
                     RINSETASPVQTLTREDIDKSGRASVAELLQTLAVDNQGSVPKNFGAGFASGASGISL
                     RGLGAASTLVLLNGRRIAPFGLADDGQKVFSDLNLIPLEAVERVEILKDGGSAIYGSD
                     AIAGVVNVILRKDYQGLAVNASYATTQYWNGQERRASITGGFGDLQKQGFNVLANLEV
                     GRQGEIWNRDITDRDYIGRQDLRYLGFSANETVASISAGGNGAITTNNAAGSAINGNV
                     RNPATLDYYNRGNLAGLGFTRTFPGAACSNFTSHPQGDPGGGCLNDAARDYGQIQPSQ
                     KYINFFARGTLDILPALQGYAEFNWYNNKNQAYTTPSQVSSSVGFPGGPVSNAGVSLG
                     AAHPDNPYFGTDARLRYLATDNGPRVKNGESDFYRVLVGLKGTVAAWDYDTAFLYSET
                     KGSELRTGYLQRDVAFALLNPSAANVAAATAGSAAYAALPPGTFWRIAENAGLNSPAL
                     YAALSPAITDSSLAKVTQVDVKASRELGQLQGGPLGVAVGAELRRESIQLTPVTGTER
                     GNIIGLGYSAYDGGRTVAAGYVEILAPVLKQLEASAAIRYDHYSDAGSSTTPKLGLKY
                     TPIRELALRGTYAQGFRA"
BASE COUNT          757 a         1639 c         1649 g          729 t
ORIGIN      
        1 gtcgggcagg aggcgcggca gcaaggtcgt gcggatcgac tgcaaagtcg ccggggtgag
       61 ggcccggccg cgagtccagt gcgagatcgc gtcgaaggcg atctcgtcgc gcagcaccgg
      121 atcgggagag gcgaggcagt cgagcagcgc aagggccagc gcctgacgcg cgttgtcatc
      181 ggcgaccttc cattccacct gcttcaggat ctgtagcgcg accttcgtcg tcgtgcccgg
      241 cgggcaggac gcgccggcca cgccgcaggc gagaaggcag agcatggagg cgacgcggcg
      301 cgctaggatg aggctcggcc aaggcgcgcg cgcgccgccg gatgcacaag gagaaggttt
      361 catgtcaagc cggtggttgg gaattctggt ttcgcttctg ttcgcgctgc cggcacttgc
      421 cgaggaggcc tcgtcgtcgc gcctcgacgc ggtgcagaag agcggcaggc tgcgcgtctg
      481 cacgcccggc gattacacgc ccttcgccct gcagaagcag gagggaatgt tcgagggtct
      541 cgacgtcgac ctggtgcaga cggccgccaa ggcgctcggc gccgaggcgg tgttcgtgaa
      601 gtcggcgtgg ccgacgctga tgaaggactt cgtcgagaaa tgcgacgtcg ccgtcggcgg
      661 catctcggtg acgctcgagc gccagaagac ggccttcttc tcgcaggcct acatggtcaa
      721 cggcaaggcg ccgatcacgc gctgcgagaa cgtcgccaag ttccagaccg tcgccgacat
      781 cgacaagccg tcggtgacgg tgatcgagaa cccgggcggc agcaacgagc gcttcgcgcg
      841 cgccaacttc aagagcgcga agatcgtcat ctacaacgac aacacgacga tcttcgacga
      901 gatcctgaag ggcaacgccg acgtgatgat ctcggagtcg gccgagacga tcgtgcagca
      961 gcgcctgcgc ccgggcctgt gcgccgtgaa tcccgacaag ccgctccagt acggcgagat
     1021 ggcgtggctc ctgccgcgcg gcgacgtcgc cttcaaggcg tgggtcgacc agtggctgca
     1081 cctcgccaag gcgagcggcg agtacgaccg gatcgccgct cgctggctgc gctagggcct
     1141 gttaacgcta tgggagggct cgcgtgactc ggcaacgcgg cgggcgccgc tttgccgaga
     1201 tcacccgcag ggcaggagcg tcgccggcca ccgggcggcg ttgcgcgctc gttgtgtgcc
     1261 caaggcacac ggcctcgcgc gcgccttgcc cggcggcgct cccgcgcgag ccctcccata
     1321 gcgtcaacag gccctaggcg gcgccggctt cgcgctcccg cgacgccgat cgtcgctcga
     1381 acggcgcccg ctcggggcgg ctcatctcga tcgagacgaa ctcggcggcc gcttcgggtt
     1441 ccatcgcgcg agttcgctcg aaggcgtgga cgtccttggc gaggcgctcg gcctcgtttc
     1501 gggtgaggtc ggggtcgagt tcggccattc gctgggcgca gcggctgcgc catgtcacgg
     1561 ggtcgagagc ttccatcgtt atcggacctt tcgctttcaa gggcgggcgg gccagtcgcg
     1621 ccggtcgccg tcccggtcgt tgtctcggtc tttgcggtct ctgtcgcgct cgcgctgctc
     1681 gtcgcggcga tcgtcgcggt cgtagcgccg gtcgttgtcg cgataggcgc cgcgatcgcc
     1741 acgatcatgg tacgtatcgt ccggataggc aacacagccg gtcatgatca cggccgcgcc
     1801 gagcgcgacc agggtgaggt gcttcatggg gtctcctggc agtgacgcca aggtacggac
     1861 ttcgcgccgg aacgtctgtc ggcagcgcgc gcgggatctt gtcggggacc tccgacaagt
     1921 ccggccgaac ggcatggctc tggcgtcggg gttgccgtgc tgccgcgatc tgcctggcga
     1981 cgatggcgta acttcagtgc gcccgtggcg gcggtgttcg ccggcctggc ggcgatcggc
     2041 tacggcagcg tcctgaccac ccggtccggt cgcggcgaag cgtatgcagc gccgctcgcg
     2101 gagagcgcct gatcgctcag tcgttccaga tcgcgcgggt cagccgaacc agcttgcggt
     2161 tggtctcggc caccttgtcg tcgagcagcc tcgcgacttc cgcctgcgcc ttcttccagc
     2221 cgagcagcgc cttggcgaac acggcgcggc cggcccgcgt gagcgacggg atccgctgcc
     2281 gacggtcgtc ggcgccgacc tcgagcgcga cccagccctc gcgttcgagg acgcggaggt
     2341 tgcggatcag cgtcgtctcg tgcatcgcga tccgcgccgc aagctccttg accgtcatgc
     2401 cctgggcgtt cgagaccgcc cacagcacgg ccatctggct cgactggacg ccggaggcgg
     2461 cgagatggcg gtcgtagacg ctcgagacgg cgcgtgcggc catccgcagg ttgccgcaca
     2521 cgcagtcgaa tccgcgcggg ctgagctggt cgacgaggtc catcggcgcg agtatagatg
     2581 caggcacatg gatcgacgag tgcgccgcgc ggcgaacgcg tgcgccctcg tgccgaccgc
     2641 ggcggcggtc cgaagtgttt cgaacttgtc gcgacgttgc gccggcgttg cgctgcggat
     2701 gcgcgcgccg agattcgcag gaactgcaac ttcggccgcg caagcggtca agacaatcgc
     2761 cgctcgcctg cgcgaagtac gccctcgaaa cacgaggcgg cccttcaggg tgatctacct
     2821 atcgacctct cttcccccgg agaatccaga tgagaaagac acggctctgc acagcgttga
     2881 tggtggcctg cggcggcgtg atgctgagcg caggtcaggc ggcactggcc cagaacacga
     2941 cgacgctcga gcgcgtcgag atcaccggct cgaacatccg ccgcatcaat tccgagacgg
     3001 cctcgccggt gcagacgctg acgcgcgagg acatcgacaa gtcggggcgc gccagcgtcg
     3061 ccgaactgct gcagacgctg gcggtcgaca accagggctc ggtgccgaag aacttcggcg
     3121 cgggcttcgc ctcgggcgct tccggcatct cgctgcgcgg cctcggcgcc gcctcgacgc
     3181 tggtgctgct gaacggccgc cgcatcgcgc cgttcggcct cgccgacgac ggccagaagg
     3241 tgttctccga cctcaacctg atcccgctcg aggcggtcga gcgcgtcgag atcctcaagg
     3301 acggcggctc ggcgatctac ggatcggatg ccatcgccgg cgtcgtcaac gtcatccttc
     3361 gcaaggacta tcagggcctc gcggtgaacg cgagctacgc gacgacccag tactggaacg
     3421 gccaggagag gcgggcgtcg atcaccggcg gcttcggcga cttgcagaag cagggcttca
     3481 acgtgctcgc caacctcgag gtcggtcgcc agggcgagat ctggaaccgc gacatcaccg
     3541 atcgcgacta catcggccgg caggacctgc gctatctcgg cttcagcgcc aacgagacgg
     3601 tcgccagcat ctccgccggc ggcaacggcg cgatcacgac caacaacgcg gccggcagcg
     3661 cgatcaacgg caacgtccgc aatccggcca cgctcgacta ctacaaccgc ggcaacctcg
     3721 ccgggctcgg cttcacgcgg acgtttcccg gcgcggcgtg cagcaacttc acgagtcatc
     3781 cgcagggcga cccgggcggc ggctgcctga acgacgccgc gcgggactac ggccagatcc
     3841 agccttcgca gaagtacatc aacttcttcg cgcgcggcac gctcgacatc ctgccggcgt
     3901 tgcagggcta tgccgagttc aactggtaca acaacaagaa ccaggcgtac acgacgccgt
     3961 cgcaggtcag cagctcggtg ggctttccgg gcgggccggt cagcaatgcc ggggtgtctc
     4021 tgggggccgc gcacccggac aacccctact tcggcaccga tgcgcgtctg cgctacctcg
     4081 ccaccgacaa cggtccgcgg gtcaagaacg gcgagtcgga cttctatcgc gtcctggtcg
     4141 gcctcaaggg aacggtcgcc gcttgggact acgacaccgc cttcctgtac tcggagacca
     4201 agggctcgga gctgcgcacg ggctatctgc agcgcgacgt cgccttcgcg ctcctgaacc
     4261 cgagcgccgc caacgttgcc gcggcaacgg ccggcagcgc ggcctacgcg gcgctgccgc
     4321 cgggaacctt ctggcgcatc gccgagaacg cgggcctgaa ctcgccggcc ctctacgccg
     4381 cgctctcgcc cgcgatcacc gacagctcgc tcgcgaaggt cacccaggtc gacgtcaagg
     4441 cgtcgcgcga gctcggtcag ctgcagggcg gcccgctcgg cgtcgccgtc ggcgccgagc
     4501 tgcgccgtga gagcatccag ctgacgccgg tgacgggaac cgagcgcggc aacatcatcg
     4561 gcctcggcta ctcggcctac gacggcggcc ggaccgtcgc cgccggctac gtcgagatac
     4621 tggcaccggt gctgaagcag ctcgaggcgt cggccgcgat ccgctacgac cactactccg
     4681 atgccggcag ctcgacgacg cccaagctcg gcctcaagta cacgccgatc cgcgagctcg
     4741 ccttgcgcgg cacgtatgcg cagggctttc gcgc
//
LOCUS       DASVHM010000409         4809 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1257005, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000409 DASVHM010000000
VERSION     DASVHM010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4809
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1257005"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1257)
                     /locus_tag="VF308_07745"
     CDS             complement(<1..1257)
                     /locus_tag="VF308_07745"
                     /inference="COORDINATES: protein motif:HMM:NF026177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEX7436583.1"
                     /translation="MWPRTLRSRLVLFFAGLLILAQATVLVILDSAAARVSRDEVEGG
                     LQAGEVVFRRLLALNREQIEQVAELLSADFAFREAVATRDMPTVLSVLVNHGRRVNAE
                     VMMLLDLDANIIADTSRPRATPRPLQFPELLARDARNTIGAADIHRADGASAIVMLEP
                     ARPFQVAVLPVLAPDPIAHVMIGFPVDEKFARQLHAMTGLEVTFATQDRDGSWHVLAS
                     TLPARASRDLNGALAADARPGSGHVVRLGGEAYLTRIARLNADSPVKVAALLQRSLAL
                     AAEPFDRLRSALLLVAGLTLAASVAGGMVLARRISGPLLALTQLAQRIRSGDYAASAR
                     IEGPEEISALAASLDHMRDGIAQREAEILRLAYQDSLTGLPNRALFQDRVEQALRAAC
                     RDGTGAAVLMMDLDRFKEVNDTLGHQV"
     gene            complement(1263..1871)
                     /locus_tag="VF308_07750"
     CDS             complement(1263..1871)
                     /locus_tag="VF308_07750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="methylamine utilization protein"
                     /protein_id="HEX7436584.1"
                     /translation="MALTAADARAATFTAHVTDRAGAPVRDAVVYLLAAGGARPNASG
                     DSAVVGQQDREFIPFVTAIQTGTAVTFPNRDQLMHHVYSFSPAKTFQIKLYEGDPPNP
                     IVFDKPGLVAVGCNIHDWMQAYILVVDTPHFAVSDAQGQARIEGVPSGSYEARAWHPH
                     APAGEWRASVRVAEGARAATPIVLVLAPPRRKPKPPLDTTKY"
     gene            complement(1965..2390)
                     /locus_tag="VF308_07755"
     CDS             complement(1965..2390)
                     /locus_tag="VF308_07755"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX7436585.1"
                     /translation="MNFIRTFAALALAAAAPAACAGAADDAQRHLRAIAANNVEALAH
                     DYAEGAVMQWVGGPLNGVYVGSAQLRDLWTRFAKAQGVLELAIAQVEENANPNGATVT
                     SNARFRGNAQTKVRHVLVYRDAKIIAEVWQIDPAMAFAN"
     gene            complement(2544..3227)
                     /locus_tag="VF308_07760"
     CDS             complement(2544..3227)
                     /locus_tag="VF308_07760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhaM family polyhydroxyalkanoate granule
                     multifunctional regulatory protein"
                     /protein_id="HEX7436586.1"
                     /translation="MADAPSFAKFVPGFDFLQGLVKNAGAALPAIGQWVAPTLNPEEL
                     EKRIGELRTVQFWLEQNARLLGATIQALEVQRMTLSTLKTMNVQMGDLRESLRIRMPD
                     MSAPSPVAQVPADPLPAQAAGAAAAPAAPKSGARKKGADAAAQSGTAPAAVDPLQWWG
                     ALTKQFTELATNAIKDSATDAAKNRAANAIEQSADAAGTTLRKAVPGATGAARKAPAK
                     PRRRAAAKR"
     gene            complement(3320..4291)
                     /locus_tag="VF308_07765"
     CDS             complement(3320..4291)
                     /locus_tag="VF308_07765"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HEX7436587.1"
                     /translation="MSRVTLFPRAVRIGLLAAWAWAPFSHAQSPSDCPPAPVELTTQR
                     IEAGMSTARDHGFLWRISKGGHASYLYGTIHLAKLEWMFPGPTVLDALRESDTVALEI
                     DLLDPDVQHRLRDGMTAERGFAFPEPIVERLGRRMAAECVEPESMAKMGPELQAAALT
                     VLAARRDGLDPSYSVDLMLSGLSRSAHKSMISLETPETHLQALQLPSRDEAIAFVTSA
                     LDDLESGRARPLLNRLAAVWAAGDHAELARYDAWCECRKTPAERQAMKRLLDDRNPGL
                     ADSIDALHSSGRNVFAAVGSLHMVGPLGLPAQMTRRGYRVELGEFER"
     gene            complement(4382..>4809)
                     /locus_tag="VF308_07770"
     CDS             complement(4382..>4809)
                     /locus_tag="VF308_07770"
                     /inference="COORDINATES: protein motif:HMM:TIGR02281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="retropepsin-like aspartic protease"
                     /protein_id="HEX7436588.1"
                     /translation="GIQWWLHAQEQMRFHAEGETIEIRRGIDGHYHWPGSINGRAVDF
                     LVDTGATGTAISAALARELRLESIGQVESSTAGGLVTGQLMRADVALRGGVRAERLRI
                     VALPALADRPLLGMDVLGRLHWQQRDGVMRIDLGAAAPS"
BASE COUNT          683 a         1645 c         1744 g          737 t
ORIGIN      
        1 gacctggtgg ccgagggtgt cgttgacctc cttgaagcgg tccagatcca tcatcagcac
       61 cgccgcgccc gttccatcgc ggcacgctgc gcgcagggcc tgctcgaccc gatcctggaa
      121 cagggcgcgg ttcggcaggc cggtcaggct gtcctgatag gccaggcgca ggatttccgc
      181 ttcgcgctgg gcgatgccgt cgcgcatgtg atcaaggctc gcggcgaggg cactgatttc
      241 ctcgggcccc tcgatccggg ccgacgccgc atagtcgccg gagcggatgc gctgggcgag
      301 ctgcgtcagc gccagcagcg ggccgctgat ccggcgcgcc agaaccatgc cgccggcgac
      361 gctcgcggcc agggtgaggc cggcgacgag caggagcgcg ctgcgcaggc ggtcgaaggg
      421 ctcggccgcg agcgcgagcg agcgctgcag cagcgccgcg accttcaccg gcgagtcggc
      481 attgagccgc gcgatgcgcg tcagataggc ctcgcccccg aggcggacga cgtggccgct
      541 gccgggtcgc gcatcggcgg cgagggcgcc gttcaggtcg cggctggcac gcgccggcag
      601 cgtcgaggcg aggacgtgcc aggagccgtc ccgatcctgg gtggcgaagg tgacctcgag
      661 tcccgtcatc gcgtggagct ggcgcgcgaa cttctcgtcg actggaaagc cgatcatcac
      721 gtgggcgatc gggtcgggcg cgagtaccgg cagcacggcg acctggaacg gccgcgccgg
      781 ctcgagcatc acgatcgccg aggcgccgtc ggccctgtgg atgtcggccg cgccgatggt
      841 gttgcgcgca tcgcgcgcca gcagttcggg aaactggagc ggccgcggcg tcgcgcgcgg
      901 ccgcgaggtg tcggcgatga tgttggcatc gaggtcgagc agcatcatga cctcggcgtt
      961 gacgcgacgc ccgtggttca cgagcaccga gagcaccgtg ggcatgtcgc gcgtcgcgac
     1021 ggcttcgcga aaggcgaagt ccgccgacag caattcggcg acctgttcga tctgctcgcg
     1081 gttcagcgcc agcaggcgcc tgaacaccac ctcgcccgcc tgcaagccgc cttccacctc
     1141 gtcacgcgaa acccgggccg cggcgctgtc gaggatcacc agcacggtcg cctgggcgag
     1201 gatcagcagc ccggcgaaga acagcacgag gcggctgcgg agggtgcgtg gccacatggt
     1261 cttcagtact tggtcgtatc gaggggcggc ttgggtttgc gccggggcgg cgccagcacg
     1321 agcacgatcg gcgtggcggc gcgcgcgccc tcggcgaccc tgacgcttgc ccgccactcg
     1381 cccgccggcg catgcgggtg ccaggctctc gcctcgtagg agccgctcgg cacgccttcg
     1441 atgcgggcct ggccttgcgc atcgctgacc gcgaagtgcg gcgtgtcgac gaccaggatg
     1501 taggcctgca tccagtcgtg gatgttgcag ccgacggcga cgagtccggg cttgtcgaag
     1561 acgatgggat tcggcggatc gccctcgtag agcttgatct ggaaggtctt ggccggggag
     1621 aacgagtaga cgtggtgcat caactggtcg cggttcggaa acgtcaccgc ggtgcccgtc
     1681 tggatcgccg tgacgaaggg aatgaactcg cggtcctgct ggcccaccac cgccgagtcg
     1741 ccggaggcgt tcggcctggc gccgccggcc gcgagcagat agaccacggc gtcgcggacg
     1801 ggcgcgccgg cgcggtcggt cacgtgggcg gtgaacgtcg cggcgcgcgc gtcagcggcc
     1861 gtcagcgcca ccagcgccgc gccgcatgcc cacccgaggc ggcgccacgc cggcaggcct
     1921 gacgcccgcc gtacggccga gcgtgacgcg aaccccacgc gccctcagtt cgcgaaggcc
     1981 atcgccgggt cgatctgcca gacctcggcg atgatcttgg cgtcgcgata cacgagcacg
     2041 tggcggacct tggtttgggc gttgccgcga aagcgcgcgt tcgacgtcac cgtcgcgccg
     2101 ttcgggttgg cgttttcctc gacctgcgca atggccagtt cgagcacacc ctgggccttg
     2161 gcgaagcggg tccagagatc gcgcaactgg gcgctgccca catagacccc gttgagcggt
     2221 ccgccgaccc attgcatcac ggcaccctcg gcatagtcgt gcgccagagc ctcgacgttg
     2281 ttggcggcaa tcgctctcag gtggcgctgt gcatcgtcgg cggccccggc gcaggcggcc
     2341 ggtgcggcag cggccagcgc aagtgcggca aatgttcgaa tgaagttcat gatcgccccc
     2401 ctgtggatgc tgggcggcgc ggggttgcga gccggcttcg cacgcccgtc gggaatcgac
     2461 cctggcggac gatgcccggg gcgtgcccct cggatttctg ctcccggccg gcgatcttga
     2521 gggcccggag cgctcgcctg ccgtcagcgc ttggcggcgg cgcgccggcg tggcttggca
     2581 ggcgccttgc gagccgcacc ggttgctccc ggcacggcct tcctcagcgt ggtgcccgcg
     2641 gcatcggccg attgctcaat cgcgttggcg gcgcggttct tggccgcgtc ggtcgcgctg
     2701 tccttgatcg cgttcgtggc gagctccgtg aactgcttgg tcaacgcccc ccaccattgc
     2761 agcggatcga cggcggcggg cgcggtgccg gactgtgccg ccgcatcggc gcccttctta
     2821 cgtgcaccgc tcttcggcgc ggccggcgcg gcagccgcgc ccgcggcctg ggcgggcagc
     2881 ggatcggccg gcacttgcgc gacgggcgag ggggccgaca tgtccggcat gcggatgcgc
     2941 agcgactcgc gcagatctcc catctgaacg ttcatcgtct tcaaggtcga cagcgtcatg
     3001 cgctgcacct cgagcgcctg gatcgtagcc cccagcaggc gcgcgttctg ctcgagccag
     3061 aactgaacgg tgcgcagctc gccgatgcgc ttctcgagct cttccggatt cagcgtcggc
     3121 gccacccact ggccgatggc aggcagcgcg gcgccggcgt tcttcaccag tccttggaga
     3181 aaatcgaacc cgggaacgaa cttcgcgaag ctgggcgcgt cggccatgat gtctcctcgt
     3241 gggtgtcgcg ctgtcgtggc gacacggcgc gcttcattgt gcatgcgccg cagcgcctca
     3301 gcgccgcagc gccgcaggct cagcgctcga attcgcccag ctcgaccctg tagccacggc
     3361 gcgtcatctg cgccggcaag ccgaggggac cgaccatgtg caagctgccg accgccgcga
     3421 acacgttgcg gccgctggaa tggagcgcgt cgatgctgtc ggccaggccc ggattgcgat
     3481 catcgagaag gcgtttcatc gcttgccgtt cggccggcgt cttgcggcat tcgcaccacg
     3541 cgtcatagcg cgccagttcg gcgtggtcgc ccgcggccca gaccgcggcg agccggttca
     3601 gcagcgggcg agcacggccc gactcgaggt cgtcgagcgc gctcgtcacg aatgcgatcg
     3661 cctcgtcccg gctcggcaac tgcagcgctt gcagatgcgt ttcgggcgtc tcgagcgaga
     3721 tcatggactt gtgcgcactg cggcttaacc cggagagcat caggtcgacg ctgtagctcg
     3781 gatcgagtcc gtcgcggcgc gcggcgagca ccgtgagcgc ggcggcctgc agttcgggcc
     3841 ccatcttcgc catgctctcg ggctcgacgc attcggccgc catgcgtcgc ccgaggcgtt
     3901 cgacgatcgg ctcggggaac gcgaaaccgc gctcggccgt catgccgtcg cgcaggcggt
     3961 gctggacatc cggatcgagc agatcgatct cgagcgcgac cgtatcgctc tcgcgcagcg
     4021 cgtcaagcac ggtcgggccc gggaacatcc attcgagctt ggcgagatgg atcgtgccgt
     4081 agaggtacga ggcgtgtccg cctttgctga tgcgccacag gaagccgtgg tcgcgcgcgg
     4141 tgctcatgcc ggcctcgatc cgctgcgtcg tcaactcgac gggcgcgggc gggcagtccg
     4201 agggtgactg ggcatggctg aacggggccc aggcccaggc tgcgagcagg ccgatgcgaa
     4261 cggcgcgggg gaaaagggtg acgcggctca tggcctcaag cttagtcgca gcgcccgtgc
     4321 cgtcgccagc cgctcgagaa gccgcgcgcg agaactattt ggctgcagcc gcctcgcgag
     4381 ctcacgaggg cgccgccgcg cccaagtcga tccgcatcac gccgtcgcgc tgctgccagt
     4441 gcaggcggcc gagcacgtcc atgccgagga gcggccgatc cgcgagcgcg ggcaacgcga
     4501 cgatgcgcag ccgctcggcg cgtacgccgc cccggagcgc gacgtcggcg cgcatcagct
     4561 gcccggtgac gagaccgccg gcggtgctcg attcgacctg cccgatcgat tcgaggcgaa
     4621 gctcgcgggc gagggcagcc gagatggcgg tgccggtggc cccggtatcg acgaggaagt
     4681 cgacggcgcg cccgttgatg ctgcccggcc agtgatagtg gccgtcgatc ccgcgtcgga
     4741 tctcgatggt ttcgccctcg gcatgaaagc gcatctgctc ttgcgcgtgc aaccaccact
     4801 ggatgccga
//
LOCUS       DASVHM010000410         2197 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_534889, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000410 DASVHM010000000
VERSION     DASVHM010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_534889"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..984)
                     /gene="dnaX"
                     /locus_tag="VF308_07775"
     CDS             complement(<1..984)
                     /gene="dnaX"
                     /locus_tag="VF308_07775"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEX7436589.1"
                     /translation="MSYLVLARKYRPRDFDSLVGQPHVVQALVNALTQQRLHHAYLFT
                     GTRGVGKTTISRILAKSLNCTGPDGSGGITARPCGVCAACREIDSGRYIDYVELDAAS
                     NRGVDEITQLLDQAVYKPVVGRFKVYMIDEVHMLSNHAFNAMLKSLEEPPEYLKFVLA
                     TTDPQKVPPTVLSRCLQFNLRPLAPQTVHEHLESVLNQEGIFAAPAALQLIARAARGS
                     MRDALSLADQAIAHGAGAIDEAGVRQMLGAVDRGQAARLVEALAARAGAAVIAAVDQL
                     RELGLSASGTLEEMAALLQQMAVRQAVPDAAAPDDPDAPETLRLSALFEPDE"
     gene            1075..>2197
                     /locus_tag="VF308_07780"
     CDS             1075..>2197
                     /locus_tag="VF308_07780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase related protein"
                     /protein_id="HEX7436590.1"
                     /translation="MTFNPEPAAPAGPAGGALDYRQSGVDYDLIDHLKVAAQRAAAAT
                     ATHLSEHGFSEVTASRGESAYVVDVGPFYLASIVECLGSKALVADEMHRLTGRSYYAG
                     IAQDTIAMAINDLITVGATPLVVQAYWAAGGSEWFADQARAEALVAGWKSACDHCGVA
                     WGGGETPALAGIVADDRIDLAASCTGLVNPKERLSLGAALAPGDAIVLLASSGIHANG
                     VSLARKLAQRLPQGYLTPLPRSHPPITYGEALLAPTLLYSPVTEALYKAGVVPHYCAN
                     ITGHGWRKLLRHPAELRYRIHTLPEVPAVLDFIREQAGQDLRAAYSTFNMGAGFALFV
                     AAADVEPTLCVAAAQGVRAWHAGSVEAGVKELVIEPLGLS"
BASE COUNT          344 a          771 c          748 g          334 t
ORIGIN      
        1 ttcatcgggc tcgaacagcg cggacagacg cagcgtctcg ggcgcatccg gatcgtcggg
       61 cgccgccgca tccgggacgg cctggcgcac cgccatctgc tgcagcagcg ccgccatttc
      121 ctcgagcgtg ccggaggccg agaggccaag ctcgcgcagc tgatcgacag ccgcgatcac
      181 ggcggcgcca gcgcgcgccg cgagcgcctc gaccagccgc gcggcctggc cgcgatcgac
      241 cgcaccgagc atctggcgaa cgccggcctc atcgatcgca ccggcgccgt gggcgatcgc
      301 ctggtcggcg agcgacaagg catcgcgcat cgagccgcgc gcggcgcggg cgatcagctg
      361 cagcgccgcc ggcgccgcaa agatgccttc ctggttcagc accgattcga gatgctcgtg
      421 cacggtctgc ggcgcgagcg ggcgcagatt gaattgaagg cagcgcgaca gcaccgtggg
      481 cggaaccttt tgcgggtcgg tcgtcgccag cacgaacttc aggtactcgg gcggctcttc
      541 gagcgatttc agcatcgcgt tgaaggcgtg attcgacagc atgtgcactt cgtcgatcat
      601 gtagaccttg aagcggccga cgaccggctt gtagacggct tggtcgagca actgcgtgat
      661 ctcgtcgaca ccgcggttcg acgccgcgtc gagttcgaca tagtcgatgt agcggccgct
      721 gtcgatctcc cggcacgcgg cgcaaacgcc gcacggacgc gcggtgatgc cgccgctgcc
      781 gtcgggcccg gtgcagttca gcgacttggc gagaatgcgc gagatcgtcg tcttgccgac
      841 gccgcgcgtg ccggtgaaaa ggtaggcatg gtgcaggcgc tgctgcgtga gcgcgttgac
      901 gagtgcctgc acgacgtgcg gctgcccgac cagcgaatcg aaatcgcgcg gccggtactt
      961 gcgcgccaga acgaggtacg acattcgagg attctacggg ggcgactctg cgcagcaggc
     1021 cgatgacctc aggcgtgccg gataatcggc acctttgcag atggctgctg cgcgatgact
     1081 ttcaaccccg aaccagcggc gcccgcaggc cctgccggcg gcgcgctcga ctaccgccaa
     1141 tccggcgtcg actacgacct gatcgatcac ctcaaggtcg ccgcgcagcg cgccgccgcc
     1201 gcgaccgcca cccatctgtc ggagcatggc tttagcgaag tgaccgcgtc gcgcggcgaa
     1261 tcggcgtacg tggtcgatgt cggcccgttc tacctcgcga gcatcgtcga atgcctcggc
     1321 tcgaaagccc tggtcgccga cgagatgcac cggctcaccg gccgaagcta ctacgccggc
     1381 atcgcccagg acacgatcgc gatggcgatc aacgacctga tcacggtcgg cgcgacgccc
     1441 ctcgtcgtgc aggcctactg ggccgccggc ggctcggagt ggttcgccga ccaggcgcgc
     1501 gccgaagccc tcgtcgccgg ctggaagagc gcctgcgacc actgcggcgt ggcctggggc
     1561 ggcggtgaaa cgccggcgct cgcgggcatc gtcgcggacg accggatcga cctcgccgca
     1621 tcctgcaccg ggctcgtcaa cccgaaggag cgcctttcgc tcggcgccgc cctcgcgccc
     1681 ggtgacgcca tcgtgctcct cgcctcgagc ggcatccacg ccaatggggt gagcctcgcc
     1741 cgcaagctcg cgcagcgcct gcctcagggc tatttgacgc cgcttccacg cagccatccg
     1801 ccgatcacct acggcgaagc cctgttggcg ccgacgttgc tgtactcgcc cgtgaccgag
     1861 gcgctctaca aggccggggt cgtgccgcac tactgcgcca acatcaccgg ccacggctgg
     1921 cgcaagttgt tgcggcatcc ggccgagttg cgctaccgca tccacaccct gcccgaagtg
     1981 ccggcggtgc tcgacttcat tcgcgagcag gccgggcagg acttgcgcgc ggcctacagc
     2041 acgttcaaca tgggcgcggg attcgcgttg ttcgtggcgg ccgcggacgt ggaaccgacg
     2101 ctctgcgtcg ccgcggcgca aggcgtgcgc gcctggcatg ccggcagcgt cgaagcgggg
     2161 gtcaaggaac tcgtgatcga acccctgggc ctgagct
//
LOCUS       DASVHM010000411         4064 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_246748, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000411 DASVHM010000000
VERSION     DASVHM010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246748"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(165..626)
                     /locus_tag="VF308_07785"
     CDS             complement(165..626)
                     /locus_tag="VF308_07785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015912662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEX7436591.1"
                     /translation="MSSIYDRLTDLDIALPPLAIPAGAYVPFVRTGNLVYLSGHIAKR
                     DGKAWVGQLGRDMTTATGRKAARAVAVDLLGTLHAAIGDLNKVERIVRITSLVNSTAE
                     YTEHHLVTNGCSELFGEVFAEKGTHARSAYGVVQLPLGACVEIELIAQVAE"
     gene            677..1945
                     /locus_tag="VF308_07790"
     CDS             677..1945
                     /locus_tag="VF308_07790"
                     /inference="COORDINATES: protein motif:HMM:NF024956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030420 - establishment of competence for
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEX7436592.1"
                     /translation="MGGTDIGWRLAGLALAWLAGVALHLQERALWPTPVYAALTLGGA
                     LCLCAAWRWRRAFVLALAGAAVCGAAASGWRASVYMADTLDPAVEGQDVVVTGIVASL
                     PQQSASGLRFRFEVESAVLRGRELRVPAQLALGWYKGCTKTRASASRSVLRAGQRWRF
                     TVRLRQPHRNLNPYGYDYELSLLEQGVRATGYVRDAPPELLHGAAGYPVERLRQRVRD
                     AIYASVADRRIAGVLAALAVSDQGAIEREDLDLFRNTGVAHLMSISGLHVTMFAWLAG
                     LVVAALWRHGARATLWLPVPQAARWGGLGAALAYAVFSGWGVPSQRTVWMLATVTLLQ
                     ALGVRWPWTLVLLVAAVAVSALDPWAVLQAGFWLSFMAVGLLMASAPADTRPAADAAP
                     ETPAGWRSLPARFARHVHGEVRTQSSRRWA"
     gene            1951..2481
                     /locus_tag="VF308_07795"
     CDS             1951..2481
                     /locus_tag="VF308_07795"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEX7436593.1"
                     /translation="MTLVFFQQVSIVGFAANLIAIPLVTLVITPLALLGAIVVPLWSV
                     GAWFVQLLVAALTWLAALPGAVWAVPVAPAWAQLAGLLGAVLLVLPLPWRVRVLAPLR
                     PCRCSCRRGAYRPKGSSISSPSTSDKAPRSSFARATTCSSTTPARSIRATAMLGSACC
                     CRCCVRAARHASIASC"
     gene            2367..3212
                     /locus_tag="VF308_07800"
     CDS             2367..3212
                     /locus_tag="VF308_07800"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7436594.1"
                     /translation="MLVYDAGPQYSRDSDAGQRVLLPLLRARGETRIDRLVLSHRDND
                     HTGGARAVLTALPVGELMSSLEAEHPVLALSTKPTRCVAGQAWIWVGVRFDVLRPQAG
                     DYEHPAKPNALSCVVRISGGGRCALLTGDIEREQEAALVADLGAALGSDVLIVPHHGS
                     RTSSSGAFLDAAQPTTAVFQAGYRSRFGHPAPNVLERYRDRGIAIALSPACGAWLWLA
                     AGPRNWRVPARRGASLLAPRGRARLRLGGNSAQDAGRNETWPEVCLPFRGRSVDGTRL
                     RRNAG"
     gene            3181..>4064
                     /locus_tag="VF308_07805"
     CDS             3181..>4064
                     /locus_tag="VF308_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HEX7436595.1"
                     /translation="MGPGFDEMRADSATVREHYLGYDRWLSQQPNDVMRSRREEAEVI
                     FRRVGITFAVYGAKDDGANRDNAGNERLIPFDLIPRVIPAHEWSEMERGLRQRVTALN
                     RFLHDVYHDQDIVRAGIIPAEQIAGNAQFRPEMKGVAVAGGVYSHIAGIDIVRAANAD
                     GSGTYYVLEDNLRVPSGVSYMLENRKMMMRLFPELFSQHRVAPVAHYPDLLLETLRSV
                     APAAVNEPTVVVLTPGMHNSAYFEHAFLAQQMGIELVEGQDLFVKDTFVYMRTTQGPK
                     RVDVIYRRVDDDFLDPSA"
BASE COUNT          550 a         1430 c         1438 g          646 t
ORIGIN      
        1 ccgctgcagg atgcaccacg ggcacggctc catcgcaaaa gcgtgctgcg agacgagcgc
       61 cgccacgatc gagccgaagg acacgaccgc gacgaagacg agcagcagcg gcgcagccgc
      121 cagcgcgccc gagccgcgag ccggccgcgc cggagtggtt gccatcactc ggcgacttgc
      181 gcgatcagct cgatctcgac gcaggcaccg agcggcaact ggacgacgcc gtaggcgctg
      241 cgtgcgtgcg ttcccttttc cgcgaagact tcgccgaaga gctcggaaca tccgttcgtg
      301 acgaggtggt gttccgtgta ctcggcggtg ctgttgacga ggctcgtgat gcgcacgatg
      361 cgctcgacct tgttcaggtc gccgatggcg gcgtggaggg tgccgagcag gtcgaccgcg
      421 accgcgcggg ccgccttgcg cccggttgcg gtggtcatgt cgcgcccgag ctggccgacc
      481 caggccttgc cgtcgcgctt ggcgatgtga ccggagagat agacgaggtt gccggtccgc
      541 acgaacggca cgtaggcgcc ggccggaatg gcgagcggcg gcagcgcgat gtcgaggtcg
      601 gtgaggcggt cgtagatgga ggacatgggt tctttcgcaa aggcgccggg ccaagcgcaa
      661 atcctacact gcggcgatgg gaggaaccga catcggctgg cgtcttgccg ggctcgcgct
      721 cgcctggctc gccggcgtgg cgctgcattt gcaggagcgc gcgttgtggc cgaccccggt
      781 ctacgcggcc ctgacgctcg gcggcgcgct ctgcctttgc gcggcatggc gctggcgccg
      841 cgccttcgtg ctggcgctcg cgggcgcggc cgtgtgcggg gcggccgcgt ccggatggcg
      901 cgcgtccgtc tacatggccg atacgttgga ccctgcggtc gaaggacagg acgttgtcgt
      961 gaccggcatc gtcgcgagcc tgccgcaaca gagcgcgtcg ggcctgcgct tccgcttcga
     1021 ggtcgagtcc gccgtgctgc gcggtcgcga gctgcgtgtg ccggcgcagc tcgcgctcgg
     1081 ctggtacaag ggctgcacga agacgcgagc ctcagcgagc cgtagcgtgc tgcgcgccgg
     1141 ccagcgctgg cgcttcacgg tgcgcctgcg ccagccgcac cgcaacctca acccgtacgg
     1201 ctacgactac gagctgagcc tgctcgagca gggcgtgcgc gccaccggct acgtgcgcga
     1261 tgcgccgccc gagttgctcc acggcgccgc cggctatccg gtcgagcggc tgcgccagcg
     1321 cgtgcgcgac gcgatctatg cgagtgtcgc cgaccggcgc atcgccggcg tgctggccgc
     1381 gctcgcggtc agcgaccagg gcgcgatcga gcgcgaagac ttggatctct ttcgcaacac
     1441 cggcgtcgcc catctgatgt cgatcagcgg cctgcacgtc acgatgttcg cttggctcgc
     1501 cggcctcgtc gtcgcggcgc tgtggcggca cggcgctcgc gcgactctgt ggctgccggt
     1561 gccgcaggcg gcgcgctggg gcggtctggg cgcggccctg gcgtacgcgg tcttttccgg
     1621 ctggggcgta ccgtcgcagc gcacggtctg gatgctcgcg accgtcacgc tgctgcaggc
     1681 gctcggtgtg cgctggccgt ggacgctggt gctgctcgtc gccgccgtcg ccgtctcggc
     1741 actcgaccct tgggccgtgc tgcaggccgg cttctggctc tcgttcatgg cggtcggcct
     1801 gctgatggcg tccgcgccgg ccgacacccg gcccgcggcc gacgcggcac cggaaacgcc
     1861 cgccggctgg cgcagcctgc cggcacgatt cgcccggcac gtgcacggcg aggtgcgcac
     1921 gcagtcatcg cgacgctggg cctgaccccc ttgaccctcg tcttcttcca gcaggtctcg
     1981 atcgtcgggt tcgcggccaa cctgatcgca atccctctcg tgactctggt gatcacgccg
     2041 ctcgccttgc tcggtgcgat cgtggtgccg ctgtggagcg tgggcgcgtg gttcgtgcaa
     2101 ctgctcgtcg cggcgctgac ctggctcgcc gcgttgccgg gcgccgtctg ggcggtgccg
     2161 gtcgccccgg cctgggcgca gctcgccggc ctcttgggcg cggtgctgct ggtcctgccc
     2221 ttgccgtggc gcgttcgcgt gctcgcgccc ctgcggcctt gccgctgctc gtgccgccgc
     2281 ggcgcctacc gcccgaaggg cagttcgatc tcctcgccct cgacgtcgga caaggcaccg
     2341 cggtcgtcgt tcgcacgcgc gaccacctgc tcgtctacga cgccggcccg cagtattcgc
     2401 gcgacagcga tgctgggcag cgcgtgctgt tgccgctgct gcgtgcgcgc ggcgagacac
     2461 gcatcgatcg cctcgtgctg agccaccgcg acaacgacca caccggcggc gcgcgcgccg
     2521 tcctgacggc gctgccggtc ggcgagctga tgagttcgct cgaagccgag cacccggtgc
     2581 tcgcgctttc aacgaagccg acgcgctgcg tcgccggcca ggcgtggatc tgggttggcg
     2641 tgcgcttcga cgtgctgcga ccgcaggcgg gcgactacga gcacccggcc aagccgaacg
     2701 cgctgtcgtg cgtggtgcgc atcagcggcg gcggccgctg cgcactcctg accggcgaca
     2761 tcgagcgcga acaggaagcc gcactcgtcg ccgacctcgg cgccgccctg ggcagcgacg
     2821 tgctgatcgt gccccatcac ggcagccgca cttcatcgag cggcgccttt ctcgacgcgg
     2881 cgcagccgac gaccgcggtt ttccaggccg gctaccgcag ccgcttcggc cacccggcgc
     2941 ccaatgtcct ggaacgctat cgcgaccgcg gcatcgccat cgcgctcagc ccggcctgcg
     3001 gtgcgtggct gtggctcgcg gccgggccgc gcaattggcg tgtgccagcg cgacgcggtg
     3061 cgtcgctact ggcaccacgg ggccgtgcga gactccggct aggtggaaac tcggcgcaag
     3121 acgccgggcg aaacgagacg tggcccgaag tttgcttacc ttttcgggga aggagcgtag
     3181 atgggaccag gcttcgacga aatgcgggct gacagcgcga ccgtgcgcga acattacctc
     3241 ggctacgacc gctggctttc ccagcagccg aacgacgtga tgcgctcgcg gcgtgaagaa
     3301 gccgaagtga tctttcgccg ggtcggcatc accttcgcgg tctacggcgc caaggacgac
     3361 ggcgccaacc gcgacaacgc cggcaacgag cgcctgatcc cgttcgacct gatcccgcgg
     3421 gtcatcccgg cgcacgagtg gagcgagatg gagcgcggcc tgcgccagcg cgtgacggcg
     3481 ctgaaccgct tcctccacga cgtctaccac gaccaggaca tcgttcgcgc cggcatcatt
     3541 ccggccgagc agatcgcagg caatgcccag ttccgccccg agatgaaggg ggtcgcggta
     3601 gcgggcgggg tctattcgca catcgccggc atcgacatcg tacgcgccgc gaacgccgac
     3661 ggcagcggca cctactacgt tctcgaagac aacctgcggg tcccgagcgg cgtgagttac
     3721 atgctcgaga accgcaagat gatgatgcgg ctcttcccgg agctgttcag ccagcaccgg
     3781 gtcgcgccgg tcgcgcacta ccccgacctg ctcctcgaga ccctgcgctc ggtcgcgccg
     3841 gcggcggtca acgagccgac ggtcgtcgtg ctgacgccgg gcatgcacaa cagcgcgtat
     3901 ttcgagcacg cgttcctggc ccagcagatg ggcatcgaac tggtggaggg gcaagatctc
     3961 ttcgtcaagg acaccttcgt ctacatgcgc accacgcagg gtccgaagcg ggtcgacgtg
     4021 atctaccggc gcgtcgacga cgacttcctc gatcccagcg cctt
//
LOCUS       DASVHM010000412         3410 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1183831, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000412 DASVHM010000000
VERSION     DASVHM010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3410
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1183831"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1251)
                     /locus_tag="VF308_07810"
     CDS             complement(<1..1251)
                     /locus_tag="VF308_07810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX7436596.1"
                     /translation="MKTPLIDAVADEARRRFLVSSALAGGGLALGVPLPEAALAADAT
                     APGAELNVWVVVRPDDTCVVRFARTEMGQGTLTGLAQLVAEELDCDWAKVTTEAITPG
                     RNFASKRAWGEMGTGGSRGIRTSQDYVRRGGAAARLMLMQAAAAQWQVPLGELTVDAG
                     VITHPASGRSVRYGQVAAAAARLPAPDPKSLTLKDPKTWKIAGQPLKRLDTADKLDGS
                     KVYAIDLRLPGMLCAAIRSCPVYGGKLVSFDADTIKGRPGVRGAVRVNDSTVAVVADT
                     WWRAKSALEALPVVWDEGAGATQSSARIATFLADGLTSDNAFADRKEGDAPAAIAGAA
                     RKVEAVYSTPFLAHATMEPMNCTARITAERGEVWVPTQNGEGALAALSEQSGLPLAQC
                     EVYKHTLGGGFGRRGQQDFVRQAVA"
     gene            1406..2617
                     /locus_tag="VF308_07815"
     CDS             1406..2617
                     /locus_tag="VF308_07815"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEX7436597.1"
                     /translation="MTASADRRSTARDIRLSSRSRLASTYLGRCIAFNLPTSHDQARM
                     PQRGLVPRATPLPLPRRPSPAPLGALEVAMRPAAPPVPLVDFLAATATTALVVLHRGY
                     VAWEHRLNDGAPERLQRCFSVTKSVASALLGLAVGAGCIDSVQAPIGRWLPELRDPGV
                     AALTLEHLLQMRSGIRFCEGMLPWRDEPRTYYAIDLRKRLPGCRIGDPVGSLFHYNDW
                     HLLLLSLLLERATGQSVTSWLQQRLWDPLGMEHAGSLMVDRHDGDGLEHLESGLTASA
                     LDLARFGQLYLQDDVWKGRRVLPEGWVEATTAPEGARSDAPWFAYYRRRPWGRFLASG
                     RIYYKDMWWGCRIDERRHDYFAMGVLGQHVYVSPDTDTVIVRLSDRFPPGVWWPPLFR
                     RIAQAVAASDG"
     gene            2690..>3410
                     /locus_tag="VF308_07820"
     CDS             2690..>3410
                     /locus_tag="VF308_07820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020722993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7436598.1"
                     /translation="MAAFSASFRASRQGCAIALACCLAGPTALAQIGPKRAEPATLKA
                     NAEVLQTLPFADRQDFDDAMRGFVGTTPDALVPGTGPRPVWTMKPYDFLKASEAADSV
                     NPSLWRQAQLNAIHGLFKVTERVYQVRGFDISNMTIVEGDTALIVIDPLLAAETARAG
                     LDLYYQHRPRKAVGTVIYSHGHADHFGGVKGVIDEADVAAGKVRVLAPSGFMETAVAE
                     NIVAGNAMSRRAQYQFGALLPP"
BASE COUNT          470 a         1246 c         1147 g          547 t
ORIGIN      
        1 ggcgaccgcc tgccgcacga aatcctgctg accacgccgg ccgaagccgc cgcccagcgt
       61 atgcttgtag acctcgcact gcgcgagcgg tagtcccgac tgctccgaca gcgcggccag
      121 cgcaccttct ccgttctgcg tcggcaccca cacttcgccg cgctccgcgg tgatccgcgc
      181 cgtgcagttc atcggctcca tcgtcgcatg ggcaaggaag ggcgtgctgt ataccgcctc
      241 gactttccgc gccgccccgg cgatggctgc aggcgcgtcg ccttctttgc ggtcggcaaa
      301 agcgttgtcc gacgtcaggc catcggcgag gaacgtggcg atgcgcgcgc tcgactgcgt
      361 ggcgcccgcg ccttcgtccc acaccacggg cagcgcctcg agcgcgcttt tcgcgcgcca
      421 ccaggtgtcg gcgaccaccg cgacggtgct gtcgttgacg cgaacggcgc cgcgcacgcc
      481 gggccggccc ttgatcgtgt cggcgtcgaa gctcaccagc ttgccgccgt acaccggaca
      541 cgaccggatc gccgcgcaca gcatgccggg caggcgcaga tcgatcgcgt agaccttgct
      601 gccgtcgagt ttgtccgcgg tgtcgagccg cttcaacggc tggcccgcga tcttccaggt
      661 tttcgggtct ttcagcgtca ggctcttcgg gtcgggcgcc ggcaggcggg ccgccgccgc
      721 ggcgacctgg ccgtagcgca ccgagcggcc gctcgcggga tgcgtgatga cgcccgcatc
      781 gaccgtcagc tcgccgagtg gcacctgcca ttgcgcggcc gcggcctgca tcagcatcag
      841 gcgggcggca gccccgccgc ggcgcacata gtcctgcgag gtgcggatgc cgcggctgcc
      901 gccggtgccc atctcgcccc aggcgcgctt gctggcgaaa ttgcgccccg gggtgatggc
      961 ttcggtcgtc accttggccc aatcgcaatc gagctcctcg gccaccagct gggccaatcc
     1021 ggtgagggtg ccctggccca tctcggtgcg cgcaaagcgc acgacgcagg tgtcgtcggg
     1081 acgcaccacg acccagacgt tgagctcggc gcccggggcc gtggcatcgg ccgccaatgc
     1141 cgcctccggc aagggcacgc cgagcgcgag gccaccaccg gccagcgccg agctgaccag
     1201 gaagcggcgg cgggcttcgt cggcgacagc gtcgatcagg ggtgtcttca tcatcgtcgg
     1261 ccccgctgtt ggtggagcgc gcagtttgag cgcctggcgc ggccggcgca atgcccgcgc
     1321 acccgatggc gccgcgcctc ggcgttgaaa tccgtttgcg accgatcaag gtttgcgaaa
     1381 ggggacgttg gcagactcgc tcgccatgac cgcatccgcc gatcgccgca gcacggcccg
     1441 cgacatccgg ctgtcgtcgc gatcgcggct cgcttcgacc tacctggggc gctgcatcgc
     1501 gttcaatctg cccaccagtc atgaccaggc gcgaatgccg cagcgcggac tggtgccgcg
     1561 cgcaacgccg ctgcccctgc cgcgccgtcc atcgccggcg cccctcggcg cgctggaagt
     1621 cgccatgcgc cccgctgcgc cgccggtgcc gcttgtcgac ttccttgccg ccacggcgac
     1681 gaccgctctg gtcgtgctgc atcgcgggta cgtcgcctgg gagcaccgcc tgaacgacgg
     1741 cgcgcccgaa cgtctccagc gctgcttctc cgtcacgaag tcggtggcat cggcgctgct
     1801 cggcctggcg gtcggcgccg gttgcatcga ctcagtgcag gccccgatcg ggcgctggct
     1861 gcccgagttg cgcgaccccg gcgtggcggc gctgacgctg gagcatttgc tgcagatgcg
     1921 ctccggcatt cgcttttgcg aaggcatgct gccgtggcgc gacgagccgc gcacctatta
     1981 cgccatcgac ctgcgcaagc gcctgccggg atgccgcatc ggcgacccgg tcgggtccct
     2041 cttccactac aacgattggc atctcctgtt gctctcgctg ctgctcgagc gcgccaccgg
     2101 ccagtcggtg acctcgtggc tgcaacagcg cctgtgggat ccgctcggca tggagcacgc
     2161 cggcagcctg atggtcgacc gtcacgatgg cgatggcctc gagcacctgg aaagcggcct
     2221 cacggcgagt gcgctggacc ttgccaggtt cggtcagctc tacctccagg acgacgtctg
     2281 gaaaggccgg cgcgtgcttc ccgaaggctg ggtcgaggcc accacggcgc ccgagggcgc
     2341 gcgctcggac gccccctggt tcgcctatta ccggcgtcgc ccctggggcc gcttcctcgc
     2401 aagcgggcgc atctactaca aggacatgtg gtggggttgc cgcatcgacg aacggcgcca
     2461 cgactacttc gccatgggcg tgctcggcca gcacgtctac gtatcgcccg acaccgacac
     2521 cgtcatcgtg cggctgtcgg accgcttccc gcccggcgtg tggtggccgc cgctgtttcg
     2581 gcgcatcgcg caggcggttg ccgcgtccga tggctgaggt gcggatggaa gcggttgcgg
     2641 cgagcgcaaa cttgtgaact cgtcgcactc gactcccaca ggagacctca tggctgcctt
     2701 ctccgcatcg tttcgggcct cccggcaggg ttgcgccatc gctctcgcct gctgcctcgc
     2761 aggcccgacg gcccttgccc agatcggccc gaagcgcgcc gagcccgcga cgctgaaggc
     2821 caacgccgag gtgctgcaga ccttgccctt cgccgaccgg caggatttcg acgacgcgat
     2881 gcgcggcttc gtcggcacga cgcccgacgc gctggtgccc ggcactggcc cgcggccggt
     2941 ctggaccatg aagccctatg acttcctcaa ggcgagcgag gctgccgaca gcgtcaaccc
     3001 gagcctgtgg cgccaggcgc agctcaacgc gattcacggc ctgttcaagg tgaccgagcg
     3061 cgtctatcag gtgcgcggct tcgacatctc caacatgacg atcgtcgaag gcgacaccgc
     3121 cctgatcgtc atcgacccgc tgctcgcggc cgagacggcg cgcgccggac tcgacctgta
     3181 ttaccagcac cggccccgca aggcggtggg cacggtgatc tactcgcacg gtcacgccga
     3241 tcatttcggc ggcgtcaagg gcgtgatcga cgaggccgat gtcgcggccg gcaaggtgcg
     3301 cgtgctcgcg ccgtcgggat tcatggaaac ggccgtggcc gagaacatcg tcgccggcaa
     3361 cgcgatgagc cggcgcgccc agtaccagtt cggcgcgctg ctgccgccgg
//
LOCUS       DASVHM010000413         2665 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_535213, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000413 DASVHM010000000
VERSION     DASVHM010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2665
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_535213"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1132
                     /locus_tag="VF308_07825"
     CDS             <1..1132
                     /locus_tag="VF308_07825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX7436599.1"
                     /translation="AELERDPPSVNVAALVGHSTLRVMTMTALDRPAEPAEIAAMQAL
                     LSEALAAGAIGLSTGTFYPPAVKATTEEIIDVGRPLGASGAIYVTHMRDEADRVMEAL
                     DETFRIGRELDVPVVVSHHKVQNVANFGRSTVTLPHIRAAMACQCVALDCYPYTAGST
                     MIRTDRGMLDGRVLIASSQPHPECAGRDLDAIAHDWGIAKDEAARRLQPGSAIYFLMD
                     EDDVRRILAFDETMIGSDGIPAGAKPHPRLWGTFPRVLGHYSRDVGLFPLETAVWKMT
                     GLTARNFGLRERGTLAVGQHADVVVFDPATIRAAASYEAPTRPAEGIDAVIVNGTVTW
                     RHGRHSGARQGQVIRRDSRAARDSTPFQPVPSSSRSNRETAP"
     gene            1129..1515
                     /locus_tag="VF308_07830"
     CDS             1129..1515
                     /locus_tag="VF308_07830"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012251012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEX7436600.1"
                     /translation="MTTPIERVPTPLPMPFSKAVRAGGFLFLSGVLPMDTEGRVVEGG
                     IDAQTRIVLERIAATLGELGASLADVVRVTVWLSDLTDFAAFNDEYRRHFGSDFPARS
                     TVQATLYGGARIEIEAQALAPRPGAP"
     gene            complement(1537..2301)
                     /locus_tag="VF308_07835"
     CDS             complement(1537..2301)
                     /locus_tag="VF308_07835"
                     /inference="COORDINATES: protein motif:HMM:NF018928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SapC family protein"
                     /protein_id="HEX7436601.1"
                     /translation="MSDSVLYVAPVLLDPAQHRSRKVVELTDFSVARKMHAAFLTATE
                     FPQAALDFAILFIPTGEHDAMGRGVMSPIVLLGLTPGENLHVEGERWDARYIPAFVRR
                     YPFLSADVKNLAAPGVFVDAAWSGFSESAGEPLFDADDKPAPALVRVMDFLERFDLEA
                     QRTRAFCERVVELGILKEMKADVTLPGDKSLVVEGFFAVDEEKLQALPDATVLELHRN
                     GLLMLLQVHLLSMANVRHLVMRKTRRLQLEGATPAA"
     gene            complement(2298..>2665)
                     /locus_tag="VF308_07840"
     CDS             complement(2298..>2665)
                     /locus_tag="VF308_07840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019425412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transporter associated domain-containing
                     protein"
                     /protein_id="HEX7436602.1"
                     /translation="GEVQGMITVRDVLEAITGEFNTRTDEHSWAVQRDDGSWLFDGLI
                     PIPELKDRLGLKELPEEDRGRYNTLAGMIMLLLGRLPDTTDSVEWEGWRFEVVDLDGK
                     RVDKVLASALAPRAEGEEA"
BASE COUNT          420 a          955 c          884 g          406 t
ORIGIN      
        1 cgcggaactc gaacgcgacc caccttcggt aaacgtggcc gcgctggtcg gccattcgac
       61 cttgcgcgtg atgacgatga ccgcgctcga ccggccggcc gaaccggccg agattgcggc
      121 gatgcaggcg ctcttgagcg aggcgctcgc ggccggggcg atcggcctgt ccaccggaac
      181 gttctatccg ccggccgtca aggccacgac cgaagagatc atcgacgtcg gtcggccgct
      241 cggcgccagc ggcgcgatct acgtgaccca catgcgcgac gaagcggatc gggtgatgga
      301 ggcgctcgac gaaaccttcc gcatcggccg cgaactcgac gtcccggtgg tcgtctcgca
      361 ccacaaggtg cagaacgttg cgaacttcgg ccgctcgacg gtgacgcttc cgcacatccg
      421 cgccgcgatg gcgtgccagt gcgtcgcgct cgactgctat ccctataccg ccggctcgac
      481 catgatccgc accgaccgcg gcatgctcga cggccgcgtg ctgatcgcct cgagccagcc
      541 gcaccccgaa tgcgccggac gcgacctcga cgccatcgcg cacgactggg gcatcgccaa
      601 ggacgaagcg gcacggcgcc tgcagcccgg cagcgcgatc tacttcctga tggacgaaga
      661 cgacgtgcgc cgcatcctgg cgttcgacga gacgatgatc ggctccgacg gcatccccgc
      721 cggcgcgaag ccgcatccac gcctctgggg cacgtttcct cgcgtgctcg gccactacag
      781 ccgcgacgtc ggcctctttc cgctcgagac cgcggtctgg aagatgaccg gcctcaccgc
      841 ccgcaacttc ggcctgcgcg aacgcggcac cctcgccgtg ggacagcacg ccgacgtcgt
      901 cgtgttcgac cccgccacga tccgcgccgc cgccagctac gaggctccga cccggcccgc
      961 cgaaggcatc gatgcggtga tcgtcaacgg cacggtgacc tggcgacacg gccgccactc
     1021 cggcgcgcgc cagggccagg tgatccggcg cgattcacgg gcggcgcgcg attcaacacc
     1081 gttccaaccg gttccatctt cgagccgatc gaaccgggag accgcgccat gaccacaccg
     1141 atcgagcgcg tcccgacgcc gctgccgatg ccgttctcga aggcggtgcg cgccggcggc
     1201 ttcctgtttc tctccggcgt gctgccgatg gacaccgagg gccgtgtcgt cgaaggcggc
     1261 atcgacgcgc agacgcgcat cgtgctcgag cgcatcgcgg ccacgctcgg cgagctcggc
     1321 gcgagcctcg ccgacgtggt ccgggtcacc gtctggcttt ccgacctcac cgacttcgcc
     1381 gccttcaacg acgaataccg acgccacttc ggctcggact ttccggcgcg ctcgaccgtg
     1441 caggcgacgc tctatggcgg ggccaggatc gagatcgagg cccaggcgct cgcgcctcga
     1501 ccgggcgcgc cctgacggcc tgcgcgcgcg gccggttcag gcagcgggcg tggcgccctc
     1561 gagctgcagg cgcctcgtct tgcgcatcac gagatggcgg acgttggcca tcgacagcag
     1621 gtgcacctgc agcagcatca ggaggccgtt gcgatggagt tcgagcaccg tcgcgtcggg
     1681 gagcgcctgc agcttttcct cgtcgaccgc gaagaagccc tcgacgacca ggctcttgtc
     1741 gccgggcagc gtgacgtcgg ccttcatctc cttcaagatg ccgagttcga cgacgcgctc
     1801 gcagaaggcc cgggtgcgct gcgcttcgag gtcgaagcgc tcgaggaaat ccatcacccg
     1861 caccagagcg ggtgcgggct tgtcgtcggc atcgaagagc ggttcgccgg cgctctcgga
     1921 aaagccgctc cacgccgcat cgacgaatac gccaggggcc gcgaggttct tcacgtcggc
     1981 gctgaggaac ggatagcggc ggacgaaggc gggaatgtag cgcgcgtccc atcgctcgcc
     2041 ctcgacgtgc aggttctcgc ccggcgtgag gccgagcagc acgatcggcg acatcacgcc
     2101 ccgccccatc gcatcgtgct cgccggtcgg aatgaagagg atcgcgaagt cgagcgcggc
     2161 ctgcggaaac tcggtcgccg tcaggaacgc cgcatgcatc ttgcgggcga ccgagaaatc
     2221 ggtcagctcg acgaccttgc ggctgcgatg ctgcgccggg tcgagcagca ccggcgcgac
     2281 gtagaggacg gaatcgctca cgcttcttct ccttcggcac gcggcgcgag cgcactcgcg
     2341 aggaccttgt cgacccgctt gccgtcgagg tcgacgactt cgaaacgcca gccctcccac
     2401 tcgaccgaat cggtcgtgtc gggcaggcgc ccgagcagca gcatgatcat cccggcgagg
     2461 gtgttgtagc ggccgcggtc ctcctcgggc agctctttga ggccgaggcg gtccttcagt
     2521 tcggggatcg ggatcaggcc gtcgaagagc cagcttccat cgtcgcgctg caccgcccac
     2581 gagtgctcgt cggtgcgggt gttgaattcg ccggtgatcg cttccagcac gtcgcgcacg
     2641 gtgatcatgc cctgcacctc gccgt
//
LOCUS       DASVHM010000414         4518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_391994, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000414 DASVHM010000000
VERSION     DASVHM010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4518
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391994"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..504)
                     /locus_tag="VF308_07845"
     CDS             complement(<1..504)
                     /locus_tag="VF308_07845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crotonase/enoyl-CoA hydratase family protein"
                     /protein_id="HEX7436603.1"
                     /translation="MASPFTPAAGALAALDLLRIEHSDAVTHVRLNRPAKRNALNDTL
                     VAQLQAAFSGMPSETRAVVLSGAGDHFSAGLDLSELSERSVAEGVLHSRSWHAAFEHI
                     QFGRVPVIAVLQGAVVGGGLELAASAHVRVAEASAFYGLPEGQRGLFVGGGGSARIPR
                     LIGTARMA"
     gene            complement(719..907)
                     /locus_tag="VF308_07850"
     CDS             complement(719..907)
                     /locus_tag="VF308_07850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436604.1"
                     /translation="MVAAPRQVLVGAAKARRMWGTAALSSGAAAMAAFGTASFRQITF
                     TPPELPAPRAVAITDSDA"
     gene            979..1842
                     /locus_tag="VF308_07855"
     CDS             979..1842
                     /locus_tag="VF308_07855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX7436605.1"
                     /translation="MNTADLIAIDTHTHLEVSCRNPFDSYGEEYDRAADKYFRSSRRP
                     TMDETIAYYREKKIGFVNFTVDAETQMGRRRIPNEEIAEAAQQNSDIMIAFGSIDPHK
                     GKMGAREATKLIEEYGVRGFKFHPTVQGFEPADKMAWPIYEVIAEHKLPAVFHSGHSG
                     IGSGMRCGGGLRLQNSNPMLLEDVAIAFPDMQIVIAHPSWPWQDEAISLAMHKPNIWI
                     DLSGWSPKYFAPQLVQYANTLLKDRILFGSDFPLITPDRWLKDFEEAGFKPEVKPLIL
                     KENAKRLLGLV"
     gene            complement(1879..2661)
                     /locus_tag="VF308_07860"
     CDS             complement(1879..2661)
                     /locus_tag="VF308_07860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017877376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TorF family putative porin"
                     /protein_id="HEX7436606.1"
                     /translation="MKKALFMIALISALLATPMLCFAEDTSPLSFNVSVTSDYRFRGI
                     SQTRLKPALQGGVDYAPASGFYVGAWASTIQWIKDNGVKGPVELDIYGGYKGEIQKDF
                     GYDVGLLQYAYVGNKLADTGGGGVYKNADTTEVYGALTYGPVSAKLSYALTDLFGNYD
                     FVSNRSSRGSIYAEVNGSFDLGSGFALVPHIGHQKVSRIAKASYTDYQVAVVKDLGKG
                     FSLSGAVVGTDADKSFYVPGAAANSTSFLGKTAAVVSVKVVF"
     gene            complement(2713..3441)
                     /locus_tag="VF308_07865"
     CDS             complement(2713..3441)
                     /locus_tag="VF308_07865"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEX7436607.1"
                     /translation="MKPVAIFQHDPLQRPGFLLRFLDEAGIASRLIRPTEGDDVPRTA
                     RSFSGLVFLGSDCSVNDRLPWIERELRLVGDAVACDIPVLGHCFGGQLLARALGATVH
                     RGPWPNIGWTRLRVTPAAKPLFGATPEVLAFNWHYETFAIPRGATRTLFGMHCLNKGF
                     SFGKHLAFQCHLEVTEEIVRTWCNSHRAELAAADGPAVQDEAEILAHLPQRLQRVHQA
                     ARAAYGRWAAPLIRSSGASHYGGL"
     gene            complement(3603..4346)
                     /gene="kdpE"
                     /locus_tag="VF308_07870"
     CDS             complement(3603..4346)
                     /gene="kdpE"
                     /locus_tag="VF308_07870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007865703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator KdpE"
                     /protein_id="HEX7436608.1"
                     /translation="MTAPLATPARVLIVEDDAAIRRFVRQTLEAAGYQVFETESLKRG
                     LIETGTRKPDLVILDLGLPDGDGVDLIRDVRGWSSLPIIVLSARSNETDKIEALDAGA
                     DDYLVKPFSVYELMARVRAALRRARRAGSGQTGHVRFGECEFDLERRLVRRRGEHVHL
                     TPVEYKLAAMLVGHESQVFTHRQLLREVWGPASSDHNHYLRVYMGHLRRKLEVDPARP
                     AHFLTETGIGYRFVADPLGAALQANVPSE"
BASE COUNT          820 a         1488 c         1493 g          717 t
ORIGIN      
        1 ggccatgcgc gccgtgccga tcaggcgcgg gatgcgggcc gagccgccgc cgccgacgaa
       61 aaggccccgc tggccttcgg gcaggccgta gaaggcgctg gcttcggcca cccgaacatg
      121 cgccgacgcc gccagttcga gaccgccgcc gacgacggcg ccctgcagca ccgcgatcac
      181 cggcacgcgg ccgaactgga tgtgctcgaa cgccgcatgc caggagcgcg aatgcaacac
      241 gccttcggcg acgctgcgct cggagagctc ggacaggtcg agcccggcac tgaagtggtc
      301 gcccgcgcca ctcaacacga cggcgcgcgt ctcgctcggc atgccgctga aggcggcctg
      361 cagctgtgcg accagggtgt cgttgagggc attgcgcttg gccgggcggt tcaggcgcac
      421 gtgcgtgacg gcgtcgctgt gctcgatgcg cagcaggtcg agtgcggcca gtgcgccggc
      481 ggcgggtgtg aagggcgaag ccatggttgc gccagtaatt tagttaagta tattaaacac
      541 atgagcagac tgcacctgag tgtttaccct cgcttcttgc tttgcaggcg cggcccgatc
      601 gaaggcggtc ctcgccgcca gaagactcgt acctcacagg caatccggag ccccgcgcag
      661 ctcagggaat gcccgaatat ctattgccga tatagttaat aagtttaatc aatcttcatc
      721 aggcgtccga atcggtgatc gcgaccgcac gcggcgccgg caattcgggc ggcgtgaacg
      781 tgatttggcg gaaactcgcg gtgccgaacg ccgccatcgc ggccgcccct gaggagagtg
      841 ccgccgtgcc ccacatcctt cgtgccttgg ccgcgccgac cagcacctgg cgtggcgcgg
      901 cgaccatgtc ccgaccgacc ccgatgcgct gatcgaccgc ctgcgcggcg ccgccagcgc
      961 cccaaccagg agacctgcat gaacaccgcc gacctgatcg cgatcgacac ccacacgcac
     1021 ctcgaggtgt cgtgccgaaa ccccttcgac agctatggcg aggagtacga ccgcgccgcc
     1081 gacaagtact tccgctcgag ccggcggccg acgatggacg agaccatcgc ctactaccgc
     1141 gagaagaaga tcggcttcgt caacttcacg gtcgacgccg aaacgcagat ggggcgccgg
     1201 cgcattccga acgaagagat cgccgaggcc gcgcagcaga acagcgacat catgatcgcg
     1261 ttcggcagca tcgatccaca caagggcaag atgggcgcgc gcgaagccac gaagctgatc
     1321 gaggagtacg gcgtcagggg cttcaagttc cacccgacgg tgcagggctt cgagccggcc
     1381 gacaagatgg cctggccgat ctacgaagtc atcgccgagc acaagctgcc ggccgtcttc
     1441 cacagcggcc actcggggat cggcagcggc atgcgctgcg gcggcggact gcgcctgcag
     1501 aactcgaacc cgatgctgct cgaggacgtc gcgatcgctt ttcccgacat gcagatcgtc
     1561 atcgcgcacc cgtcgtggcc gtggcaggac gaagcgatct cgctcgccat gcacaagccc
     1621 aacatctgga tcgatctgtc gggttggagc ccgaagtact ttgcgccgca gctcgtgcaa
     1681 tatgcgaaca cgctgctgaa ggaccggatc ctgttcggat ccgacttccc gctgatcacg
     1741 cccgatcgct ggctcaagga cttcgaggaa gccggcttca aacccgaagt gaagccgcta
     1801 atcctgaagg aaaacgcgaa gcgcctgttg gggctcgtct gagagcgcga atccgcgcag
     1861 cacggaggcg atagcttctc agaacacgac cttgacactc acgaccgcgg cggtcttgcc
     1921 caggaaactc gtgctgttcg ccgcggcgcc aggcacgtag aacgacttgt ccgcgtcggt
     1981 gccgacgacc gcgccgctca gcgagaaccc tttgccgaga tccttgacca cggcgacctg
     2041 gtagtcggtg tacgacgcct tggcgatgcg actcaccttc tggtggccga tgtgcggcac
     2101 cagggcgaaa cccgagccga gatcgaaact gccgttcacc tcggcgtaga tgctgcctcg
     2161 gctgctccga ttcgagacga agtcgtagtt gccgaacaga tcggtcaatg cataggacag
     2221 cttggcggac accgggccgt aagtcagtgc tccgtagacc tcggtggtgt cggcgttctt
     2281 gtagacgcct ccaccgcccg tgtcggcgag cttgttaccg acgtaggcgt actggagcag
     2341 gcccacgtcg tagccgaaat ccttctggat ctcgcccttg taaccgccgt agatgtcgag
     2401 ttcgaccggg cccttcaccc cgttgtcctt gatccactgg atcgtcgagg cccaggcgcc
     2461 gacgtagaag ccggacgccg gcgcgtaatc gacgccgcct tgcagggcgg gcttcaagcg
     2521 cgtctgcgaa atgccgcgga atcgatagtc gctcgtcacg ctgacgttga aggagagcgg
     2581 ggaagtgtct tcggcaaagc agagcatcgg agtcgcgagc agcgcggaga tcagcgcgat
     2641 catgaagagg gcttttttca tttgtggttt ccaggttgac gggggaagaa tcaggatcga
     2701 acgagccagc cgctacaagc cgccgtagtg gctcgcgccg gacgaccgga tcaacggtgc
     2761 ggcccagcgg ccgtacgcag cgcgagcggc ctggtgaaca cgttgcagac gctgcggcag
     2821 gtgcgcgagg atttcggcct cgtcctgcac ggccggccca tccgcggcgg cgagttcggc
     2881 tcgatgcgag ttgcaccagg tccgcacgat ctcttcggtg acttccaggt ggcactggaa
     2941 agccaggtgc ttgccgaatg aaaatccctt gttcaggcag tgcatgccga acagcgtgcg
     3001 cgtcgcaccc cgagggatcg cgaaggtctc gtagtgccag ttgaacgcca gcacctcggg
     3061 cgtggcgccg aacaggggct tggccgccgg cgtgacgcgc aatcgggtcc agccgatgtt
     3121 gggccacgga cccctgtgca ccgtggcgcc gagagcccgc gccagcagtt gcccgccgaa
     3181 gcagtggccg agaaccggga tatcgcaggc caccgcatcg ccgacgagac gcagttcccg
     3241 ctcgatccag ggcagccgat cgttgacgct gcagtcgctg cccagaaata ccagaccgct
     3301 gaaggaccga gcggtgcgcg gcacatcgtc gccctcggtg ggccggatca ggcgggatgc
     3361 gattcccgct tcatccagaa atcgaagcaa aaagccggga cgttgcaagg ggtcatgctg
     3421 gaagatggcg actggcttca tgaaatggcg ctcgacgcga gcgcccgctg tgacgatcgg
     3481 gtcactctac ggattcgcgt gaataaacgg cctcaaattc ggccgccggc gcgtcaatgc
     3541 cgtgtcctgc ctctcgtgcg aaacgagcgc cctcttcgcg acgtcacgac gacccgcgcg
     3601 tgtcactccg aaggaacatt ggcttgcagc gccgcgccga gaggatcggc gacaaagcgg
     3661 tagccgattc ccgtttcggt caggaagtgc gccggccgcg cagggtcgac ttcgagcttg
     3721 cggcgcaagt gacccatgta gacgcgcaga tagtggttgt ggtcggacga ggccggcccc
     3781 cacacctcgc gcagcagttg gcgatgcgtg aagacctggc tctcgtggcc caccagcatc
     3841 gccgcgagct tgtactcgac gggcgtgagg tgcacgtgct cgccgcggcg ccgcaccagc
     3901 ctgcgctcca gatcgaactc gcactcaccg aagcgcacat gaccagtctg cccggagccg
     3961 gcgcggcgtg cccggcgcaa cgccgcgcgc acgcgcgcca tcagctcgta gaccgaaaac
     4021 ggcttgacca ggtagtcatc ggcgccggcg tcgagggcct cgatcttgtc agtctcgttg
     4081 ctgcgcgccg agagcacgat gatcggcagg ctgctccagc cgcgcacgtc gcggatgagg
     4141 tcgacgccgt cgccgtcggg caggcccaaa tccaggatca ccagatcggg cttgcgcgtt
     4201 ccggtctcga tcaggccgcg cttcaggctc tcggtctcga acacctggta gccggcggcc
     4261 tcgagcgtct ggcggacgaa gcgccggatc gccgcgtcgt cctcgacgat cagcacgcga
     4321 gccggggtgg ccagcggcgc ggtcatgtcg gcacctgcgg cggcgcgact tgcgccgcct
     4381 tcgcgtcttc ggccggctcg gcgagcgccg gcgcgtcgcg atgcgggagc gtccaggtca
     4441 gcaccgcgcc atgcgccggc ggcgcgcgat tggccgcgct gatcgtcccg ccatgcgcct
     4501 gcacgatggc gcggcaga
//
LOCUS       DASVHM010000415         4117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_752485, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000415 DASVHM010000000
VERSION     DASVHM010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_752485"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /gene="prpE"
                     /locus_tag="VF308_07875"
                     /gene_synonym="yahU"
     CDS             <1..217
                     /gene="prpE"
                     /locus_tag="VF308_07875"
                     /gene_synonym="yahU"
                     /EC_number="6.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019427935.1"
                     /note="catalyzes the formation of propionyl-CoA using
                     propionate as a substrate; PrpE from Ralstonia
                     solanacearum can produce acetyl-, propionyl-, butyryl- and
                     acrylyl-coenzyme A, and Salmonella enterica produces
                     propionyl- and butyryl-coenzyme A; not expressed in
                     Escherichia coli when grown on propionate/minimal media;
                     ATP-dependent; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="propionyl-CoA synthetase"
                     /protein_id="HEX7436609.1"
                     /translation="EGDIMKTVDTQLGAVARPSRVHFVSALPKTRSGKLLRRAIQAVC
                     EGRDPGDLTTIEDPGALQALREVVAAA"
     gene            357..2189
                     /locus_tag="VF308_07880"
     CDS             357..2189
                     /locus_tag="VF308_07880"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEX7436610.1"
                     /translation="MVFKSFSVRAVVLLSFALAAGMVSAQGKPRIDKAADLPRFSYRI
                     DAKLEDVVRLPERFAPFAAAVRRDTESVLAGYDIADKATRRDLLNVLAMLDFLDAKYE
                     RTLARIEEIRLLQDKPADKLLSGLRLKAMASAARSTGPSGEAYGRAVAEAMQRELAPL
                     PYAVIENDIKGAKAGAELMGETLILGRVREVMQPIVDSGGVLSSEFAPGVVAARFGWF
                     AALPLKQTFIDVYGTYLAAHKIEKADIWAARDVTLQASHTRDPVVIAVWDSGVDTRLF
                     GSQIVRHGDRPALIAYDKYGRPAAGELMPLAPEQQGRLAPMLARVKGFSDLSSNIDSK
                     EASEVKAFLSGLAPEQYRAAIEEIGLAGNYSHGTHVAGIALAGNPAARLVVARIEFSH
                     TLKPDPCPSRELAERDARATQAYVDFMKRHRVKVVNMSWGGDVGAFEVDLEQCGIGKT
                     PEERKALAREYFEIQKAALTRAFAGAPRILFVTAAGNSNNDASFIESVPSGIALPNLL
                     TVGAVDSAGDEAPFTSYGPTVKVHANGYQVESVLPGGSRVALSGTSMASPQVANLAGK
                     LLAVNPKLTPEQLIRIITDTAERTPDGRRNLINPKKALAAATAA"
     gene            complement(2202..3875)
                     /locus_tag="VF308_07885"
     CDS             complement(2202..3875)
                     /locus_tag="VF308_07885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEX7436611.1"
                     /translation="MPLPKPPAQRASLLSADDFVSHAGARAGKRAPRSARECEASVPA
                     VLELVDGAERGVGGAAFAISAEAPVQAAPAAPARAPAPGPAKKPRGTGPSTLFVLDTN
                     VLMHDPTSLFRFEEHDIYLPMITLEELDGHKRGMTEVARNARQVSRDLDALAANMPSR
                     DAAGMSDGLLLSRTGHREAGGKLYFQTNLVDVTLPPGLPQGKADNQILGVVKALREQQ
                     KGRDVVLVSKDINMRIKARALGLPAEDYFNDKTLEDGDLLYTGVLPLPADFWERHGKT
                     MESWQQGGLTYYRISGPMVPVLLVNQFLYLEAPGAAPLYAKVTEITGKTAVLRTLKEY
                     THQKNAVWGVTARNREQNFALNLLMDPECDFITLTGTAGSGKTLMSLAAGLSQVMDDR
                     RYTEIIVTRVTVPVGEDIGFLPGTEEEKMSPWMGALDDNLEVLSKTDTGAGEWGRAAT
                     NDLVRSRIKIKSLNFMRGRTFLNKYVIIDEAQNLTPKQMKTLITRAGPGTKIVCLGNL
                     AQIDTPYLTEGSSGLTFAVDRFKGWPHSGHVTLARGERSRLADFASEVL"
     gene            complement(3940..>4117)
                     /locus_tag="VF308_07890"
     CDS             complement(3940..>4117)
                     /locus_tag="VF308_07890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005797581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEX7436612.1"
                     /translation="MFGVVKNKIMYGKKVKGIERSTFLIDGTGVLRAEWRGLTVAGHV
                     DEVLKAVKAIKKSG"
BASE COUNT          646 a         1372 c         1404 g          695 t
ORIGIN      
        1 cgaaggcgac atcatgaaga ccgtcgacac ccagctcggt gcggtggcgc ggccgtcgcg
       61 ggtccacttc gtgagcgcct tgccgaagac gcgctcgggc aagctcctgc gccgcgcgat
      121 ccaggcagtc tgcgagggcc gcgatccggg cgacctcacg accatcgaag accccggcgc
      181 attgcaggcg ctgcgcgagg tcgtcgccgc agcctgaccc cggggatctg cagtccgtcg
      241 catgacgggg gggtcggcag cccgctgcga agcggggtgc gcgtagcatc gcgcttcggc
      301 ccggttggcg ttcgacgcga ccggtccgtc tgccaattct tccgtcgagg aattccatgg
      361 tcttcaagtc attttccgtg cgcgccgtcg tgctcctgag cttcgcgctc gcggcgggga
      421 tggtctcggc ccaaggcaag ccgcgcatcg acaaggccgc cgacctgccg cgcttcagct
      481 atcggatcga cgccaagctc gaggacgtcg tgcgcctgcc ggagcgcttt gcgccgttcg
      541 ccgcggccgt ccggcgcgac accgaatcgg tgctcgccgg ctacgacatt gccgacaagg
      601 cgacgcgccg cgacttgctc aacgtgttgg cgatgctgga cttcctcgat gcgaagtacg
      661 agcgcaccct tgcgcgcatc gaggagatcc ggctccttca ggacaagccc gccgacaagc
      721 tcctctcggg cttgcggctc aaggcgatgg cgtcggccgc ccgatcgacc gggccgagcg
      781 gcgaagccta cgggcgcgcg gtggccgagg cgatgcagcg cgagctcgcg ccgctgccct
      841 atgcggtgat cgaaaacgac atcaagggcg ccaaggccgg cgcggagctg atgggcgaaa
      901 cgctgatcct cggccgggtg cgcgaagtga tgcagccgat cgtcgactcg ggcggtgtgc
      961 tgagttccga gttcgcgccc ggcgtcgtcg cggcgcgctt cggctggttc gcggcattgc
     1021 cgttgaagca gaccttcatc gatgtctacg gcacctatct cgcggcccac aagatcgaga
     1081 aggcggacat ctgggccgct cgcgatgtga ccctgcaagc ttcgcacact cgtgaccccg
     1141 tggtcatcgc ggtgtgggac agcggcgtcg acacgcgcct cttcggcagc cagatcgtgc
     1201 gccacggcga tcggcccgcg ctgatcgcct acgacaagta cggccggccg gcggcgggtg
     1261 aattgatgcc gttggcgccg gagcagcagg gccgcctggc gccgatgctg gcgcgggtca
     1321 agggcttctc ggatctgagc tcgaacatcg acagcaagga ggcgagcgag gtcaaggcct
     1381 tcctctccgg gctggcgccg gaacagtacc gggcggcgat cgaggagatc ggtctggcgg
     1441 gcaactattc gcacggaacc catgtcgccg gcatcgccct cgccggcaac ccggcggcac
     1501 gcctcgtcgt cgcgcgcatt gaattcagcc acaccttgaa gccggatccg tgtccgagcc
     1561 gcgagctcgc cgagcgcgac gcccgggcca cgcaggccta cgtcgacttc atgaagcggc
     1621 atcgggtcaa ggtcgtcaac atgagctggg gcggcgacgt cggggccttc gaggtcgatc
     1681 tcgaacaatg cggcatcggc aagacgcccg aggagcgcaa ggccctggcg cgcgaatact
     1741 tcgaaatcca gaaggccgcc ctgacgcgcg cgttcgcggg cgcgcccagg atcctgttcg
     1801 tcaccgcggc cggcaacagc aacaacgacg cgagcttcat tgagagcgtg ccgagcggca
     1861 tcgcgttgcc caacctgttg acggtgggtg cggtcgacag tgccggcgac gaggcgccgt
     1921 tcacgagcta cggcccgact gtgaaggtgc atgcgaacgg ctatcaggtc gagagcgtcc
     1981 tgccgggcgg cagccgggtc gcgctctcgg gcacgtcgat ggcctcgccg caggtcgcga
     2041 acctcgccgg caagctgttg gcggtgaacc cgaagctcac gcccgagcag ctgatccgaa
     2101 tcatcacgga cactgccgag cgcacgcccg acgggcgccg caacctgatc aatccgaaga
     2161 aggcgctggc cgcggcgacg gccgcctgat ctcgagcact tctagagcac ttcggacgcg
     2221 aaatcggcga ggcgcgagcg ctcgccgcgc gccagcgtca cgtggcccga atgcggccaa
     2281 cccttgaagc ggtcgaccgc gaaggtgagt cccgagctgc cctcggtgag atagggcgtg
     2341 tcgatctgcg ccaggttgcc gaggcagacg atcttcgtgc ccggcccggc gcgcgtgatc
     2401 agtgtcttca tctgcttggg cgtcaggttc tgggcctcgt cgatgatcac gtacttgttg
     2461 agaaacgtgc ggccgcgcat gaagttcagg ctcttgatct tgatcctgct gcgcaccaga
     2521 tcgttggtcg cggcgcggcc ccattcgccg gcaccggtgt cggtcttgga cagcacctcg
     2581 aggttgtcgt cgagcgcgcc catccacggg ctcatctttt cctcttcggt gccaggcagg
     2641 aagccgatgt cctcgcccac cggcacggtc acccgcgtga cgatgatttc ggtgtagcgc
     2701 cggtcgtcca tcacctggga aaggcccgcg gcgagcgaca tcagcgtctt gccggagccg
     2761 gccgtgcccg tcagcgtgat gaagtcgcac tccgggtcca tcagcaggtt gagcgcgaaa
     2821 ttctgctcgc ggttgcgcgc ggtgacgccc cacacggcgt tcttctggtg ggtgtattcc
     2881 ttgagcgtgc gcagcaccgc ggtcttgccg gtgatttcgg tcaccttcgc atagagtggc
     2941 gccgcaccgg gcgcttcgag gtagaggaac tggttgacca gcagcaccgg caccatcggc
     3001 ccgctgatcc ggtagtaggt gaggccgccc tgctgccagc tctccatcgt cttgccgtgg
     3061 cgctcccaga aatcagcggg cagcggcaac accccggtgt agagcaggtc accgtcttcg
     3121 agcgtcttgt cgttgaagta gtcttcggcc ggaaggccga gcgcacgcgc cttgatgcgc
     3181 atgttgatgt ccttcgacac caacaccacg tcgcggccct tctgctgctc gcgcaacgct
     3241 ttcaccacgc cgaggatctg gttgtcggcc ttgccctgcg gcaagcccgg cggcagggtg
     3301 acatcgacca ggttggtctg gaagtacagc ttgccgccgg cttcccgatg cccggtgcgg
     3361 ctcagcagca gcccgtcgct catgccggcc gcatctcggc tcggcatgtt cgcggccagc
     3421 gcgtcgaggt cacggctgac ctggcgcgcg ttgcgcgcca cttccgtcat gccgcgtttg
     3481 tgcccgtcga gttcctcgag cgtgatcatc ggcaggtaga tgtcatgctc ttcgaagcga
     3541 aacagcgagg tcgggtcgtg catcagcacg ttggtgtcga gcacgaacag cgtggacggt
     3601 ccggtgccgc gcggcttttt ggccgggccg ggtgccggcg cgcgagccgg tgcggccgga
     3661 gcagcctgca ccggagcctc ggcgcttatc gcaaacgccg cgcctcccac cccacgctcg
     3721 gccccatcga cgagttcgag aactgccggc actgacgcct cgcactcgcg tgccgatctg
     3781 ggagcgcgct tgccggcgcg ggcccccgca tgcgagacga agtcgtcggc gctgagcagg
     3841 gaagcgcgct gcgcgggagg cttgggcaat ggcatgtcgg aggggtcgag ggaaggaaag
     3901 ggccgcgccg gcgcggcagg ctggagcgct cgaacgggat cagcccgact tcttgatcgc
     3961 cttgacggct ttcagcacct cgtcgacatg tccggcgacg gtcaggccgc gccattcagc
     4021 acgcaacacc ccggtgccat cgatgaggaa ggtgctgcgc tcgatgcctt tcaccttctt
     4081 gccgtacatg atcttgttct tgacgacgcc gaacatg
//
LOCUS       DASVHM010000416         2200 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1184009, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000416 DASVHM010000000
VERSION     DASVHM010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1184009"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..527)
                     /locus_tag="VF308_07895"
     CDS             complement(<1..527)
                     /locus_tag="VF308_07895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007870279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEX7436613.1"
                     /translation="MRMISASLKALFGAALVAVAAGASAQKTQLTVYTALETDQIKAY
                     EAGFTKQNPNIELKWVRDSTGVITAKLLAEKANPQADVVMGVAASSLALLDSQGMLVG
                     YAPINLDAIMSAYRDKKDPPAWWGMDVWGATVCFNTVEAQKKGIPKPETWKDLTKPIY
                     KGQVVMPNPASSGTG"
     gene            705..1439
                     /locus_tag="VF308_07900"
     CDS             705..1439
                     /locus_tag="VF308_07900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate utilization associated
                     transcriptional regulator"
                     /protein_id="HEX7436614.1"
                     /translation="MPALAAAAVPHPTITLLQTSSLSSVVQGELERMILSGELRPGEK
                     LTETALAARLGVSRGPLREAFRMLDESGLVRTEKNRGVFVRDLPVEEAVEIFDLRAAM
                     DQLVGRRLAVSIAPAALKEVRGLVEQMEQAVKAKDAPRYHLLNLRFHDRLVELAGNGK
                     LTAIYRRLIKELSLFRRLNLADGWLMPISAGEHRQIVKAIASGDADAAGRAMYDHVME
                     SKERTIKNHQRPAAALAGAAVEKAAR"
     gene            1436..>2200
                     /locus_tag="VF308_07905"
     CDS             1436..>2200
                     /locus_tag="VF308_07905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX7436615.1"
                     /translation="MITVNGRTYALAHQPTVVVCVDGCEPDYIAQSVAHGHVPWLKEV
                     LATGTTLVADCVIPSFTNPNNLSIVTGAPPSVHGICGNYLFDVASGEEVMMNDPKWLR
                     APTILAELANAGQFVAVITAKDKLRKLLGHRLKGICFSAEKADEASEDENGIDGVVER
                     VGMPVPSVYSAELSEFVFAAGVELMSHERRPDVMYLSTTDYVQHKHAPGTDGADAFYR
                     MMDGYLGKLDAMGCTIVLTADHGMNAKTKMDSAPDVV"
BASE COUNT          368 a          754 c          714 g          364 t
ORIGIN      
        1 aagccggtgc cggatgaagc cgggttgggc atgacgactt ggcccttgta gatcggcttg
       61 gtcaggtctt tccaggtctc gggcttcggg atgcctttct tctgcgcctc gacggtgttg
      121 aagcacaccg tcgcgcccca cacgtccatg ccccaccagg ccggcggatc cttcttgtcg
      181 cggtacgccg acatgatcgc gtcgaggttg atcggcgcgt agccgacgag catgccctgc
      241 gagtcgagca gcgccaggct cgaggcggcg acgcccatca cgacgtcggc ctgcgggttg
      301 gccttctcgg cgagcagctt ggcggtgatg acgccggtcg agtcgcggac ccacttcagc
      361 tcgatgttcg ggttctgctt cgtgaagccg gcctcgtagg ccttgatctg gtcggtctcg
      421 agcgccgtgt agaccgtgag ctgggtcttc tgcgccgatg cgcccgccgc gacagcgacg
      481 agggctgcgc cgaacagcgc tttgagtgag gccgaaatca tgcgcatctc cctgatgtct
      541 ggtgtgagga tcggatcgat cagcgccgat ccgtgtgcaa agcctatgcc ggttctgtga
      601 cggctcggcg gctgacgcag cgcagtctca tctgcgcgaa aaccgaagtc aactgttttt
      661 tgaagattgt tgacaatcgg cgccgcttgg cttctactgc gccgatgccc gccctcgccg
      721 cggccgccgt gccgcatccg accatcacgc tcctgcagac gagctcgctc tcgagcgtcg
      781 tccaaggcga gctcgagcgg atgatccttt ccggcgagct gcgtccgggc gaaaagctca
      841 ccgagacggc gctcgccgcc cgcctcggcg tctcgcgcgg gcctttgcgc gaggcgtttc
      901 gcatgctcga cgaatcgggc ctcgttcgca ccgagaagaa ccgcggcgtc ttcgttcgcg
      961 acctgccagt cgaggaagcc gtcgagatct tcgacctgcg cgcggcgatg gaccaactcg
     1021 tcggccgccg cctcgccgtc tcgatcgcgc cggcggcgct gaaggaggtc cgcggcctgg
     1081 tcgagcagat ggagcaggcc gtcaaggcca aggacgcgcc gcgctaccac ctgctcaacc
     1141 tgcgcttcca cgatcgcctg gtcgagctcg ccggcaacgg caagctgacg gcgatctaca
     1201 ggaggctgat caaggaactg agcctgtttc gccgcctcaa cctggcggat gggtggctga
     1261 tgccgatctc ggccggcgag catcgccaga tcgtcaaggc gatcgcctcg ggcgacgccg
     1321 acgcggccgg acgggcgatg tacgaccacg tcatggaaag caaggagcga acgatcaaga
     1381 accaccaacg acccgccgcc gcgctcgccg gcgccgcggt ggaaaaggcc gcgcgatgat
     1441 caccgtcaac ggccgcacct acgccctcgc gcaccagccc accgtcgtcg tctgcgtcga
     1501 cggctgcgag cccgactaca tcgcccagtc ggtcgcgcac ggccacgtgc cgtggctgaa
     1561 ggaagtgctc gcgaccggca cgacgctcgt cgccgactgc gtcatcccga gcttcaccaa
     1621 cccgaacaac ctctcgatcg tcaccggcgc gccgccctcg gtgcacggca tctgcggcaa
     1681 ctacctgttc gacgtcgctt ccggagaaga ggtgatgatg aacgacccga agtggctgcg
     1741 cgcgccgacg atcctcgccg agctcgccaa cgccggccag ttcgtcgccg tgatcaccgc
     1801 caaggacaag ctgaggaagc tcctcggcca ccgcctgaag ggcatctgct tctcggccga
     1861 gaaggccgac gaggcgagcg aggacgagaa cggcatcgac ggcgtcgtcg agcgcgtcgg
     1921 catgccggtg ccctccgtct acagcgccga gctctcggag ttcgtgttcg cggccggcgt
     1981 cgagctgatg tcgcacgaac gccgccccga cgtgatgtat ctctcgacca ccgactacgt
     2041 gcagcacaag cacgctcccg gaaccgacgg cgccgacgcg ttctatcgca tgatggacgg
     2101 ctacctcggc aagctcgacg ccatgggctg cacgatcgtg ctcacggcgg accacggcat
     2161 gaacgcgaag acgaagatgg actcggcgcc cgacgtcgtg
//
LOCUS       DASVHM010000417         3792 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_822993, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000417 DASVHM010000000
VERSION     DASVHM010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3792
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_822993"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VF308_07910"
     CDS             complement(<1..201)
                     /locus_tag="VF308_07910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HEX7436616.1"
                     /translation="MRCIEWCCRAGLGLLAGCATPPGGPGEGSGPTTVARPAPAPAAP
                     VPRQAPAAATPATTTRLPAPHAV"
     gene            complement(188..2176)
                     /gene="uvrC"
                     /locus_tag="VF308_07915"
     CDS             complement(188..2176)
                     /gene="uvrC"
                     /locus_tag="VF308_07915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018309391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEX7436617.1"
                     /translation="MNDDAIPDQETLHVRPAVADAGAACERLLAEVAALPNLPGVYRY
                     FDAGDAVLYVGKARDLKKRVSSYFQKSHSGAGLVRIGQMVAKIVRMETTVVRSEAEAL
                     LLENNLIKSLVPRYNILFRDDKSYPYLKITGARPAGNDGAPAAASFPRVAYYRGAIDQ
                     RHRYFGPYPSAWAVKETIQLLQKVFHLRSCEDTVFGNRTRPCLLYQIRRCSAPCVGHI
                     GPADYARDVANAERFLDGEQQELTDALQAEMMAHAEALRFEQAAEIRNQLGALSRVLH
                     QQAVEDNTGLTTKDADILAAKVEGGRACVNLAMVRGGRHLGDRPYFPKHVEDAIALPA
                     DDDADGAPAAEVRVLEAFIAQHYLDAAVPPLLVLSHPVRKALVEALSMQSGIKVTAQH
                     QPREPRRAWLDMCIKGARIRLAQLLAEEGSQQARTHALVDALDLAVEDLHSFRIECFD
                     ISHTAGESTQASCVVFEAHRMQSSQYRRYNIDGITGGDDYAAMRQVLMRRYAKFVEAA
                     SRGEARLPDLVLVDGGRGQVGVAREVFGELGIDLGKIVGVEKGEGRKVGLEELFFADG
                     REKISLAKDSAALMLVAQIRDEAHRFAITGMRARRASVRTGASGLEEIAGVGPKKRAK
                     LLQRFGGVRGVSYASVEDLMSVDGISKDLAEEIYRALH"
     gene            2244..3314
                     /gene="earP"
                     /locus_tag="VF308_07920"
     CDS             2244..3314
                     /gene="earP"
                     /locus_tag="VF308_07920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011801027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0106361 - protein-arginine
                     rhamnosyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P maturation arginine
                     rhamnosyltransferase EarP"
                     /protein_id="HEX7436618.1"
                     /translation="MLWDLFCRIVDNHGDVGVGWRLAADLAARGEAVRLWLDDQDALA
                     WMAPSGASGVTVGSWADAARTRVPGDVVAEAFGCGLPEPFARRMAARPRPPVWINVEY
                     LSAEAVVERNHGLPSPRLHGPGAGLTQWFFYPGFTAATGGLLREADLADRQRRFSRTA
                     WLGSVDLGGRPPIRGDERIVSLFCYENPAIANLLDALALAPTLLLLAVGPAARTVEAL
                     LGPRLERNALRAVALPLLSQNDYDHLLWSADLNFVRGEDSFVRAQWAAAPFVWQIYAQ
                     EDGVHLVKLDAFLDRFLNQAPPALAQDVRRFFRAWNAASPFPSTLPELAPWRAHCAAW
                     RAGLLEQGDLCSRLLCFAAERR"
     gene            3406..3735
                     /locus_tag="VF308_07925"
                     /pseudo
     CDS             3406..3735
                     /locus_tag="VF308_07925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346962.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
BASE COUNT          557 a         1312 c         1291 g          632 t
ORIGIN      
        1 cacggcgtgg ggcgcgggca ggcgcgtcgt ggtggccggc gttgcggcgg ccggggcttg
       61 acgcggcacg ggcgctgcgg gtgccggcgc gggccgcgcc accgtcgtcg gccccgaacc
      121 ctcgccgggt ccgcccggcg gcgtcgcgca gccggccagc aggcccaggc cggcccggca
      181 acaccattca atgcagcgca cgatagattt cctccgcgag atccttcgag atgccgtcca
      241 cgctcatcag gtcttcgacg ctggcgtagc tcaccccgcg cacgccgccg aagcgctgca
      301 gcagtttcgc tcgtttcttg gggccgacac cggcaatctc ctcgagtccg ctcgcgccgg
      361 tgcgcacact ggcacgccgc gcccgcattc cggtgatggc gaaccgatgc gcttcgtcgc
      421 ggatctgggc caccagcatc agcgcggccg agtccttggc gagggatatc ttctcgcgcc
      481 cgtcggcgaa gaacagttcc tcgagcccca ccttgcggcc ctcccccttc tcgacgccga
      541 cgatcttgcc gagatcgatg ccgagttcgc cgaagacctc gcgcgcgacg ccgacctggc
      601 cgcggccgcc gtcgacgagg acgaggtcgg gcaggcgcgc ttcgccgcgg ctcgccgcct
      661 cgacgaactt cgcatagcgc cgcatcagca cctggcgcat cgccgcgtag tcgtcgccgc
      721 cggtgatgcc gtcgatgttg tagcgccggt actgcgaact ctgcatgcgg tgcgcctcga
      781 agaccacgca cgaggcctgg gtcgactcgc cggcggtgtg actgatgtcg aagcactcga
      841 tgcgaaagga gtgcaggtcc tcgaccgcga ggtcgagcgc atcgacgagc gcgtgggtgc
      901 gcgcctgttg cgagccctcc tcggcaagca actgggcgag ccggatccgc gcgcccttga
      961 tgcacatgtc gagccaggcg cggcgcggct cgcgcggctg gtgctgggcg gtcaccttga
     1021 tgccgctctg catcgaaagc gcctcgacca aggctttgcg gaccgggtgg ctcagcacca
     1081 gcagcggcgg caccgcggcg tcgagatagt gctgcgcgat gaaggcttcg agcacgcgca
     1141 cctcggccgc aggcgcgccg tcggcatcgt cgtcggccgg cagcgcgatc gcgtcttcga
     1201 catgcttcgg gaaatagggc cggtcgccga gatgccggcc gccgcgcacc atcgcgaggt
     1261 tcacgcaggc gcgcccgccc tcgaccttgg ccgcgaggat gtcggcatcc ttcgtcgtca
     1321 ggccggtgtt gtcctcgacg gcctgctggt gcagcacgcg cgacagcgcg ccgagctggt
     1381 tgcggatttc cgccgcctgc tcgaaccgga gcgcctccgc gtgcgccatc atttcggcct
     1441 gaagggcgtc ggtcagctcc tgttgttcgc cgtcgaggaa gcgctcggca ttggccacgt
     1501 cgcgcgcata gtcggccggc ccgatgtggc cgacgcaggg cgccgagcag cgcctgatct
     1561 ggtagagcag gcagggccgg gtgcggttgc cgaacaccgt gtcctcgcag ctgcgcaggt
     1621 gaaagacctt ctgcagcaac tggatcgttt ccttcacggc ccaggcgctc ggataagggc
     1681 cgaagtagcg atggcgctgg tcgatcgcgc cgcggtaata ggccacgcgc gggaagctcg
     1741 cggccgctgg cgcgccgtcg ttcccggcgg gccgcgcccc ggtgatcttc aggtacgggt
     1801 agctcttgtc atcgcgaaac aggatgttgt agcgcgggac cagcgacttg atcaggttgt
     1861 tctcgagcag cagcgcctcg gcctcggagc gcacgacggt cgtctccatg cgcacgatct
     1921 tcgcgaccat ctggccgatg cgcaccagac cggcgccgct gtgactcttc tggaaatagc
     1981 tcgacacgcg cttcttcagg tcgcgcgcct tgccgacata gagaacggcg tcgccggcgt
     2041 cgaaatagcg gtagacaccg ggaaggttgg gcagcgccgc cacctcggcg aggagcctct
     2101 cgcaagcggc gccggcatcg gccactgcgg ggcggacgtg cagcgtctct tggtcgggga
     2161 tcgcgtcgtc gttcatcctg tgaagattgt gccgcgtggg ccccgcccaa ggccggcccg
     2221 cgccagcccc aataattccg ccaatgctct gggacctttt ctgccgcatc gtcgacaacc
     2281 acggcgacgt cggtgtcggc tggcggctcg ccgccgatct cgccgcacgc ggcgaggccg
     2341 tgcgcctctg gctcgacgac caggacgcct tggcctggat ggcgccgagc ggagcgagcg
     2401 gcgtcacggt cggcagctgg gccgacgcgg cccgaaccag ggtaccgggc gacgtcgtcg
     2461 ccgaggcctt cggctgcggt ctgcccgagc cctttgcccg gcggatggcg gcacggccac
     2521 gcccgccggt gtggatcaac gtcgaatatc tcagcgccga ggccgttgtc gaacgcaatc
     2581 acggcctgcc ctcgccgcgc cttcacgggc cgggcgccgg gctcacccag tggttcttct
     2641 atcccgggtt cacggccgcc accggcgggc tgttgcgcga ggccgacctc gccgatcgcc
     2701 agcggcgctt ttcacgcact gcctggttgg gatcggtgga tctcgggggc cggcctccga
     2761 tccgcggcga tgaacgcatc gtcagcctgt tctgctacga gaacccggca attgcgaacc
     2821 tgctcgacgc gctggcgcta gcgcccaccc tgctgctcct ggcggtgggg ccggcggcgc
     2881 ggacggtcga ggccctgctc ggacctcgtc tcgagcgcaa cgccctgcgc gcggtggcgc
     2941 tgccgctctt gagccagaac gactacgacc acctgctctg gtcggcggat ctgaatttcg
     3001 tgcgcggcga ggactccttc gttcgcgcac agtgggctgc ggcacctttc gtctggcaga
     3061 tctatgcgca ggaggacggc gttcatctcg tcaagctcga cgcctttctc gatcgcttcc
     3121 tgaaccaggc gccgccggct ctcgcgcaag acgtgcgtcg gttcttccgg gcgtggaatg
     3181 cggcctcgcc gttcccgtcc acgctcccgg agctcgcgcc ctggcgcgcc cattgcgccg
     3241 cctggcgcgc cgggttgctc gagcagggcg acctgtgcag ccggctcctg tgttttgctg
     3301 ccgaaagacg ctaaaatgtg aaggtttgcg cagcgctcgc accgggagac tgcagcaccc
     3361 ccgcatcctc gcgtccgcgg acgccttccc acccgaaaga tcgttatgaa agtcgcccag
     3421 gaaattcgcg ccggaaacgt catcatgcag ggcaaggatc cgatggtcgt gctgcgcacc
     3481 gagtacagcc gcggcggccg caattcggcg acggtgcgca tgaagctgaa gagcctcctc
     3541 agcaactcgg gcaccgaggt cgtgtacaag gctgacgaca agatggacca ggtcatcctc
     3601 gacaagaagg agtgcaccta ctcctatttc gcggatccga tgtatgcgtt catggatgcc
     3661 gactacaacc agttcgaggt cgaggccgag aacatgggcg acgcgatcca gtatctcgaa
     3721 gacggcatgc ccgtgtaggt ggtgttctac gacggcaagg ccatttcggt cgaactgccg
     3781 accagcctgg tg
//
LOCUS       DASVHM010000418         1670 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_173723, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000418 DASVHM010000000
VERSION     DASVHM010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173723"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1086
                     /locus_tag="VF308_07930"
     CDS             <1..1086
                     /locus_tag="VF308_07930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HEX7436619.1"
                     /translation="AAEYARRMQGDLPADWARTALDAAVAAHTKAETVASRKASQLAL
                     EAFTQALPELLGGSADLTGSNLTHTASTAPLRFEAHGAVALGADAKIGRHINYGVREF
                     GMAAIMNGIALHGGFIPYGGTFLTFSDYSRNAIRMAALMKLRVIHVFTHDSIGLGEDG
                     PTHQSIEHAAALRLIPGLDVWRPCDTAETAIAWACAIESRRRPSALLLSRQNLPYAPK
                     AGLDEIAKGAYVLAEPNEVGLRKKARAVIIATGSEVQLALHAQQQLAAEGIAVRVVSM
                     PSTTVFDRQRTAYKESVLPAGLPRVAVEMGATDGWWKYGCAAVVGIDTFGESAPAPVL
                     FKHFGFTVDNVAATVRQVLSKSSKEPS"
     gene            1083..>1670
                     /locus_tag="VF308_07935"
     CDS             1083..>1670
                     /locus_tag="VF308_07935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012250522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde 3-phosphate dehydrogenase
                     NAD-binding domain-containing protein"
                     /protein_id="HEX7436620.1"
                     /translation="MTIRVAINGYGRIGRNILRAHYEGGKKHDIQIVALNDLGKPETN
                     AHLTRHDTAHGPFPGSVGVDGDAMIVSGDKGGSGADRIKVLAVRNPAELPWKDLGVDV
                     VLECTGLFTSKAKASAHLNGGAKKVIISAPGGSDMDATIVYGVNHGVLKASDTVISNA
                     SCTTNCLAPLVQPLHARIGLVNGLMTTIHAYTNDQV"
BASE COUNT          293 a          608 c          546 g          223 t
ORIGIN      
        1 gccgccgagt acgcgcgccg catgcagggg gatctcccgg ccgactgggc ccggacggcg
       61 ctcgatgcgg ccgtcgccgc gcacaccaag gccgagacgg tcgcgagccg caaggcgagc
      121 cagctcgcgc tcgaggcctt cacgcaagcg ctgcccgaac tcctcggcgg cagcgccgac
      181 ctgaccggtt cgaacctcac ccacaccgcc agcacggcgc cgctgcgctt cgaggcccac
      241 ggcgcggttg cgctcggcgc cgacgcgaag atcggccgcc acatcaacta cggcgtgcgc
      301 gaattcggca tggcggcgat catgaacggc atcgcgctgc acggcggctt catcccctac
      361 ggcggcacct tcctcacctt cagcgactac agccgcaacg cgatccgcat ggccgcgctg
      421 atgaagctgc gcgtcatcca tgtcttcacg cacgactcga tcggcctggg cgaagacggg
      481 ccgacgcacc agtcgatcga acatgccgca gccctccgtc tcatccccgg gctcgacgtc
      541 tggcgcccct gcgacacggc cgagacggcc atcgcctggg cctgtgcgat cgagagccgg
      601 cggcgcccga gcgcgctgct gttgtcgcgg cagaacctcc cctatgcgcc gaaggctggg
      661 ctcgacgaga tcgcgaaggg cgcctacgtg ctcgccgaac cgaacgaggt cggcctgcgc
      721 aagaaggcgc gggcggtgat catcgcgacc ggatcggaag tgcagctcgc gctgcatgcg
      781 cagcagcagc tcgcggccga gggcatcgcg gtgcgggtcg tctcgatgcc gtcgacgacg
      841 gtcttcgacc gccagcgcac ggcctacaag gaaagcgtgc tgccggccgg ccttccgcgc
      901 gtggcggtcg agatgggcgc gaccgacggc tggtggaaat acggctgcgc cgcggtcgtc
      961 ggcatcgaca ccttcggcga gtcggccccg gcgccggttc tcttcaagca cttcggcttc
     1021 acggtggaca acgtcgccgc gacggtgcgt caggttttgt ccaagtcatc caaggaacct
     1081 tcatgaccat cagagtcgcc atcaacggct atggccgaat cggccgcaac atccttcgcg
     1141 cccactacga aggcggcaag aagcacgaca tccagatcgt cgcgctcaac gacctcggca
     1201 agcccgagac caacgcgcac ctgacgcgcc acgacaccgc gcacgggccg ttcccgggca
     1261 gcgtcggcgt cgacggcgac gcgatgatcg tctcgggcga caagggcggc agcggcgccg
     1321 accgcatcaa ggtgctcgcc gtgcgcaacc ccgccgaact gccgtggaag gacctcggcg
     1381 tcgacgtcgt cctcgaatgc acggggctct tcacctcgaa ggcgaaggcc tccgcacacc
     1441 tgaacggcgg ggcgaagaag gtcatcatct ccgcgccggg cggcagcgac atggacgcga
     1501 ccatcgtcta cggcgtcaac cacggcgtgc tcaaggccag cgacacggtg atcagcaacg
     1561 cgagctgcac gaccaactgc ctggcgccgc tggtgcagcc gctgcacgcc cggatcggcc
     1621 tcgtcaacgg cctgatgacg acgattcacg cctacaccaa cgaccaggtg
//
LOCUS       DASVHM010000419         1678 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1330894, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000419 DASVHM010000000
VERSION     DASVHM010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1330894"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1678)
                     /gene="ligD"
                     /locus_tag="VF308_07940"
     CDS             complement(<1..>1678)
                     /gene="ligD"
                     /locus_tag="VF308_07940"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013541217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase D"
                     /protein_id="HEX7436621.1"
                     /translation="VIVWDRGTWEPVGDARQGMADGKLVFRLHGEKLAGLWELVRIRK
                     PGDRQDPWILFKKKDEWARPQADHDVVSALPDSVLAKPLGPLESRTTAPDRLEGAVKA
                     ALPARLSPQLATLAKTIPGTGEWLYEIKFDGYRVMARIDDGAARLFTRGGHDWTAKLR
                     SLATAVEALGLQSAWLDGEIVVMNDDGTPNFNALQNAFDSARTESILYFLFDVPYFEG
                     YDLRRVPLRDRRALLKHLLEAKGIERVRYSEAFAADLASVLQTACRLSLEGVIAKRSD
                     APYVSQRTETWLKLKCGQRQEFVIGGFTDRSGAAAEVGSLLLGVHDAAGKLVYAGNVG
                     TGWDSKTGRELYRKLTRIEVAEAPFAIGDPSERGRWSRRPAVEERWVEPQLVAEIAFA
                     EWTPDGHVRHASFQGLRTDKPAAAITRERAVSVASETVAKKPIDGVAAATKVSNPDRV
                     IDPSTGLKKLDLVRYYESVADWILPHLKGRPVSLVRGPSGVGGELFFQKHGDKLGIPG
                     IRELDPALWPGHQALLEIANVEALVGAAQMNVIELHTWNSTIRHIDKPDRV"
BASE COUNT          240 a          562 c          580 g          296 t
ORIGIN      
        1 ccacccgatc cggcttgtcg atgtgtctga tggtcgagtt ccaggtgtgc agctcgatca
       61 cgttcatctg tgcggcgccg acgagcgcct ccacgttggc gatctcgagc agggcctggt
      121 gccccggcca cagggccgga tcgagctcgc ggatgccggg gatgccgagc ttgtcgccgt
      181 gtttctggaa gaagagttcg ccgcccacgc cgctcggccc gcgcaccagc gagaccggcc
      241 ggcccttgag gtgcggcagg atccagtcgg ccacgctctc gtagtagcgc acgagatcga
      301 gctttttcag gcccgtgctc ggatcgatga cgcggtccgg gttggacacc ttggtcgctg
      361 cggcgacacc gtcaatgggt ttcttcgcga ccgtctcgct cgccacgctg acggcccgct
      421 cgcgcgtgat ggcggccgcg ggtttgtcgg tgcgcaagcc ctggaacgag gcgtgccgga
      481 cgtggccgtc gggggtccat tcggcgaagg cgatctcggc gacgagttgc ggctctaccc
      541 agcgctcctc gaccgccggg cgacgcgacc agcgtccgcg ctcgctcgga tcgccgatcg
      601 cgaacggcgc ttcggcgacc tcgatccggg tgagtttcct gtagagctcg cggccggtct
      661 tcgaatccca gccggtgccc acattgcccg cgtagaccag cttgccggcc gcgtcgtgca
      721 cgccgagaag gaggctgccg acctcggccg cggcgccgct gcggtcggtg aagccgccga
      781 tcacgaattc ctggcgctgg ccgcatttga gcttgagcca ggtctcggtg cgctgcgaca
      841 catagggcgc gtcgctgcgc ttcgcgatca cgccttcgag gctgagccgg catgcggtct
      901 gcagcacgct tgcgagatcc gccgcgaaag cttcgctgta gcgcacgcgc tcgatgccct
      961 tggcctcgag cagatgcttg agcagcgcgc gccggtcccg cagcggcacg cgccgcaggt
     1021 cgtagccctc gaagtagggc acgtcgaaca ggaagtacag gatgctttcg gtgcgcgccg
     1081 aatcgaacgc gttctgcagg gcattgaagt tcggcgtgcc gtcgtcgttc atcaccacga
     1141 tctcgccgtc gagccatgcc gattgcaggc ccagcgcctc gactgccgtg gccaacgatc
     1201 gcaacttcgc ggtccagtcg tggccaccgc gggtgaagag ccgggccgcg ccgtcgtcga
     1261 tgcgcgccat cacccgatag ccgtcgaact tgatttcata gagccactcg ccggtgcccg
     1321 gaatcgtctt cgcgagtgtc gcgagctggg gcgagagccg ggccggaagg gctgccttga
     1381 cggcgccttc gaggcggtcg ggtgcggtgg tgcgggattc gagcggaccg agcggtttgg
     1441 cgagcacgct gtcgggcagc gcgctgacga cgtcgtggtc ggcctgcgga cgggcccact
     1501 cgtctttttt cttgaagaga atccacgggt cctggcgatc cccgggcttc ctgatgcgca
     1561 cgagttccca gagaccggcg agcttttcgc catgcaggcg aaagaccaac ttgccgtcgg
     1621 ccatgccctg gcgcgcatcg ccgacgggct cccaggtgcc gcggtcccag acgatcac
//
LOCUS       DASVHM010000420         3137 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_392153, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000420 DASVHM010000000
VERSION     DASVHM010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3137
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392153"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..694
                     /locus_tag="VF308_07945"
     CDS             <1..694
                     /locus_tag="VF308_07945"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008902859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="oxygenase MpaB family protein"
                     /protein_id="HEX7436622.1"
                     /translation="ELAYTLLTFGYVFLRCLRRLGIGLPRADEEAFLHCWNVTGHVLG
                     IERELMADTMEESEALFARMQARGRARPVAADPRPALGRALVATMRRSIPLALVKPFP
                     ALMLRYLCGARTSKDLGVRGPAATAGSALFFVTMFAMRVLDRVVRLFVADFSISRFVT
                     RVVGYRLLTRVLMDQTRPLSLPDHLLGQIGSMTAGWGDDPKAPRWMNRLEDRLTTAGD
                     WRVGGGPQPGRG"
     gene            complement(639..>3137)
                     /locus_tag="VF308_07950"
     CDS             complement(639..>3137)
                     /locus_tag="VF308_07950"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7436623.1"
                     /translation="DDPALLDRSSLLATVLDLHLAETPTTRDMSGRGRLDATAELLIH
                     LLHATDSGSTRVVILEDVHWLDSPSWSVVEQAAHQVRGLCLLLTARPRVDNPLPARAV
                     VLLDAATTTRVVLAPLGDAAVRDVIAAQLGVSVVPDAIVRLVSDKTQGMPLFVRQVLG
                     TLIDSRTVRIDAGAVRYDLQALAGFSIPDTIRGAVISRIDRLSPRQQFTLKKASVVGR
                     VFTLEALGSADAGDASAEELRADIEAIAARGLVEPGPAPGEFSFSHALIRDAVYSLLP
                     FERRRQLHAALAAWYERRVGDDPEMLGRIGNHYAEAHDPVRAPRALESAGDRALRTGA
                     YREAQSLFRRLVEISATGFGAGSDARVSATDEDLAGWRLRLGLSSYDLGELESARIDL
                     EIAAKLLRDPIPTERAIGLRLGVEIVKALARGLLRRGARPRQEHTRERQLARVLSALG
                     WIYSLIQRPNHMLFTIVRRFNLLADGAPSAEQMGAFSGTMYLLMMLGRHRLGDAFAAR
                     IVEIQRGLQQPRAYADAIYVVALAYVAQARWEECERHATEAEQIFARLGERRLRMVVI
                     ALLANAAELRGAFERASEFYSALLQMAEESGDPLSKCWATGGLAMIAIRQGRFDDGRA
                     MAETAVALARSIGETAADLTSSGSLAICALETGDVERARALVAEGVELLAKMPRLATA
                     QHVLNGLDTFSEAILLLWERDAPVRGSADWKQRAGHAALATSRMNGYARVFAIGAPAA
                     ANRRALEHWLHNRREKAIAMWKHAIAEGERSRIPYETGKAHLELARHLPLGNNERRVH
                     AEAAAAIFERIGAPAGLTRARAAGHLQPASPQRS"
BASE COUNT          455 a         1077 c         1112 g          493 t
ORIGIN      
        1 agagctcgcc tacaccctgc tgaccttcgg ctatgtgttc ctgcgctgcc tgagacgcct
       61 gggcatcggc ctgccacgcg ccgacgagga ggctttcctg cattgctgga acgtcaccgg
      121 gcatgtgctg ggcatcgaac gcgagttgat ggccgacacg atggaggaaa gcgaagcgct
      181 ctttgcgcgc atgcaggcgc gcggccgggc ccggccggtg gctgcggatc cgcgtccggc
      241 cctcggccgc gcgctcgtcg cgacgatgag gcgctcgatc ccgctcgcgc tcgtaaagcc
      301 ttttccggca ctgatgctgc gctacctgtg cggtgcacgg acctcgaagg atctcggcgt
      361 gcgcggaccg gcggcgacgg ccggcagcgc gctgttcttc gtgaccatgt tcgccatgcg
      421 cgtgctcgat cgcgtggtcc ggctcttcgt ggccgacttc tcgatctccc gcttcgtgac
      481 ccgcgtcgtc ggctatcgac tgttgacccg cgtgctgatg gatcagaccc ggccgctcag
      541 cctgcccgat cacctgctcg gccagatcgg atcgatgacg gcaggttggg gcgacgatcc
      601 gaaggcgccg cgctggatga atcggctcga ggatcggctc acgaccgctg gggactggcg
      661 ggttggaggt ggcccgcagc ccgggcgcgg gtgaggccgg ccggcgcgcc gatgcgctcg
      721 aagatcgccg ccgccgcttc ggcgtgcacg cggcgttcat tgttgccgag cggcagatgg
      781 cgtgccagtt cgagatgggc cttgccggtt tcgtagggta tgcgcgagcg ttcgccctcg
      841 gcgatcgcgt gcttccacat cgcgatcgcc ttttcgcgcc ggttgtgcag ccagtgctcg
      901 agcgcgcgcc ggttcgccgc cgccggcgcg ccgatcgcga atacccgcgc gtagccgttc
      961 atgcgcgacg tggcaagcgc cgcgtgcccc gcccgctgct tccagtcggc gctgccgcgc
     1021 accggtgcgt ctcgttccca gagaagcagg atcgcctcgg agaaggtgtc caggccattg
     1081 aggacgtgct gcgccgttgc caggcgaggc atcttggcca gcagctcgac gccttcggcg
     1141 acgagggccc gggcccgctc gacgtcgccc gtctcgagcg cgcagatcgc gagcgatccg
     1201 ctgctggtta gatcggcggc tgtttcgccg atcgagcggg cgagcgcgac cgcggtttcg
     1261 gccatcgccc ggccgtcgtc gaaacgcccc tggcggatcg cgatcatcgc gaggccaccg
     1321 gtcgcccagc acttgctgag cggatcgccg gattcttcgg ccatctgcaa cagcgccgag
     1381 tagaactcgc tcgcgcgctc gaacgctccg cgcaactccg cggcattggc cagcagcgcg
     1441 atcaccacca tgcgcaggcg gcgctcgccg aggcgcgcga agatctgctc cgcttcggtc
     1501 gcatggcgct cgcactcctc ccagcgcgcc tgcgccacgt aggcgagcgc gacgacgtag
     1561 atggcgtcgg cataggcgcg cggctgttgc agcccgcgct ggatctcgac gatgcgggcc
     1621 gcaaaggcgt cgccgagacg gtgccggccg agcatcatca acaggtacat ggttccgctg
     1681 aaggcgccca tctgttcggc gctcggcgct ccgtccgcaa gcagattgaa gcggcgcacg
     1741 atcgtgaaca gcatgtgatt cgggcgctgg atcaggctgt agatccagcc gagcgcgctc
     1801 agcacacgcg cgagctggcg ctcgcgcgtg tgctcctgtc gcggccgtgc gcctcgacgc
     1861 aggaggccgc gcgccagcgc cttgacgatt tcgacgccga gccgaagacc gatcgcgcgc
     1921 tcggtgggga tcggatcccg aagcagcttc gccgcaatct ccagatcgat gcgcgcgctt
     1981 tccagttcac ccaggtcata ggacgagagc ccgaggcgca ggcgccagcc cgcaaggtct
     2041 tcatcggtcg cgctgacgcg cgcgtcgctg ccggcaccga agccggtcgc cgaaatctcg
     2101 accagacgtc gaaagagcga ctgggcttca cggtaggcgc cggttcgcag cgcccggtcg
     2161 ccggcacttt cgagggcacg tggcgcgcgc accggatcat gggcctcggc gtagtgattg
     2221 ccgatgcggc cgagcatctc cggatcatcg ccgacgcggc gttcgtacca ggcggcgagc
     2281 gcggcgtgca attggcgccg gcgttcgaac ggcagcaggc tgtagacggc atcgcggatc
     2341 agcgcatggc tgaaggagaa ttcgcccggc gccgggcccg gttcgacgag tccgcgcgcg
     2401 gcgatcgctt cgatgtcggc gcgcagctct tcggccgacg cgtcgccggc gtccgcgctg
     2461 ccgagcgctt cgagcgtgaa cacgcgcccg accacgctcg ccttcttcag cgtgaactgc
     2521 tggcgcggcg acagccggtc gatccgcgag atcaccgcgc cgcggatcgt gtccggaatc
     2581 gaaaagccgg cgagtgcctg gaggtcgtag cggaccgcgc ctgcgtcgat gcgaacggtg
     2641 cggctgtcga tgagcgtgcc gagcacctgc cggacgaaga gcggcattcc ctgcgtcttg
     2701 tcgctgacga gacgcacgat cgcatcgggc acgacggaaa cgccgagctg cgcggcgatg
     2761 acgtcacgga ccgccgcgtc gccgagcggc gcgagcacga cccgtgtggt cgtcgcggcg
     2821 tcgaggagca cgaccgcgcg cgccggcagc gggttgtcga cgcgcggccg cgcggtcagc
     2881 aacaggcaga gcccgcgcac ctggtgcgcg gcctgctcga cgaccgacca tgacggcgag
     2941 tcgagccagt gcacatcctc gaggatcacg acccgggtgc ttcccgaatc ggtggcatgc
     3001 aacaggtgaa tcagcaactc cgcggtcgcg tcgaggcggc cccggccgct catgtcgcgg
     3061 gtggtcggcg tctcggcgag atgcaggtcg agcaccgtgg caagcaggct cgagcgatcc
     3121 agcagcgcgg ggtcgtc
//
LOCUS       DASVHM010000421         7446 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_969864, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000421 DASVHM010000000
VERSION     DASVHM010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7446
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_969864"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..531)
                     /locus_tag="VF308_07955"
     CDS             complement(<1..531)
                     /locus_tag="VF308_07955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011807962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7436624.1"
                     /translation="MTAPLVFITGASSGIGQGLAARFQRAGYRLALVARRAAEVQAWA
                     EGARLEPSTFRVYGADVRDVAAITGAGRACIAAQGVPDVVIANAGISVGMDTAVYEDL
                     EVMRATFETNNIGLAATFQPFVAPMTERRSGTLVGIGSVAGIRGLPGHAAYCSSKAAV
                     IGYCESLRGELRPSGVK"
     gene            complement(581..1243)
                     /gene="lptC"
                     /locus_tag="VF308_07960"
     CDS             complement(581..1243)
                     /gene="lptC"
                     /locus_tag="VF308_07960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HEX7436625.1"
                     /translation="MNEATAATPPAVALRVPAAPWLVRLGGLLTAYLPLLVMALLALL
                     SWWLVENTPLAGEPGAEAPPRHEPDYTMREFVVQRFARDGTMRTQIEGDVALHYPDTD
                     TLEIEHPRIRAIAANGRVTLASAERALANGDGSEVQLLVGAHVIREATGAEEAIEFRG
                     DFLHVFLATERVRSHLPVRVTQGATEVQAAGMEYDNLARVVDLKGRMRAVFAVPARKP
                     RK"
     gene            complement(1240..1830)
                     /locus_tag="VF308_07965"
     CDS             complement(1240..1830)
                     /locus_tag="VF308_07965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase family protein"
                     /protein_id="HEX7436626.1"
                     /translation="MPMRPIEPTLTFEPELLLAARGPGAGIRAAIFDVDGVLTDGSIY
                     LNEHGEVLKAFSTLDGHGLKLLARGGIVPLVISGRDSPALRRRMADLGIMHALYGVGD
                     KLAAATPLLAQLGIEWDALAVMGDDWPDLPLLARAGFACAPPNAHLEVRALVDHVTSA
                     PGGHGAARECCDLLLTAAGRYAELLRTDLITLDRSA"
     gene            complement(1832..2821)
                     /locus_tag="VF308_07970"
     CDS             complement(1832..2821)
                     /locus_tag="VF308_07970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEX7436627.1"
                     /translation="MSAIPSFDSERALQLARATLDIEARALLGLKARQGEGFARAVQA
                     MLACRGRVVVMGMGKSGHVGRKIAATLASTGTPAMFVHPGEASHGDLGMVTTGDVVLA
                     ISNSGESDELAAIVPAIKRIGVTLIAMTGRADSSLAEHADIALSSEVDQEACPLNLAP
                     TASTTAQMALGDAIAVALLDARGFREEDFARSHPGGSLGRKLLIHVRDLMRSGDAVPQ
                     VGPETSFTEMLREMTGKGLGFTAVAGADGRVLGIFTDGDLRRLIERGVDLRALRAGEV
                     LHTGPKLVRADALAVDAAQVMEQHRITSVLVVDARDVLCGALNSNDLMRAKVI"
     gene            2912..4915
                     /locus_tag="VF308_07975"
     CDS             2912..4915
                     /locus_tag="VF308_07975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEX7436628.1"
                     /translation="MATTLELVLLYLLAAVAGAVVCRLARLPPMLGYLAVGVLIGPNA
                     MALAKDSAAVSYLAEFGVVFLMFVIGLEFNLPKLRSMRKLVFGLGLSQVALTTLAVLL
                     GNALLAWGAMRAGRAWGLSWQSAIALGGALAMSSTAIVVKLMAERLELESEHGRRVMG
                     VLLFQDLAVVPLLVLIPALGSSPEVLLRELALAALKAGVLLAVLLVGGQRVMRGWLTL
                     VARRKSEELFILNLLLVTLGLAWLTESAGLSLALGAFVAGMLIAETEYKHQVETDIRP
                     FHDVLLGLFFITIGMKLDAAAVVREWPLVLLLTVMPVLFKFALVTALARLFGAAPGVA
                     LRTGLYLAQAGEFGFVLLTLATQQRLLPAPLQSPVLASMVLSMLATPLLIHYSNRIVM
                     RLSSNDWLMQSVAMTTIAKRTINTAGHIIIAGFGRSGQNLARLLEAEKIAYIALDLDP
                     DRVRQAAAAGQSVVFGDAARLQSMMAAGLGRARAVVISYHDTPSAMKVLQIVRAQAPK
                     VPVIVRTLDDSDLERLQAAGATEVVPEAIEGSLMLASHALALVGVPMRRVLRVVQQQR
                     DARYGLLRGYFHGADDDTVDELQHARLLSVTLPVTAGSVGHPLGSQPLGADEVTVVSV
                     RRASGAVTHADPALVLAAGDTLVLSGLPEPLARAEAALLASAA"
     gene            complement(4958..5425)
                     /locus_tag="VF308_07980"
     CDS             complement(4958..5425)
                     /locus_tag="VF308_07980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEX7436629.1"
                     /translation="MEIDELVQAVQTLNAEDAFRARLSLDQWRTLAPYLGRHEIRAGD
                     LLIKQGDADRSMYFLAQGSMQIFVTGGPPGSNRVAILRAGAVVGEPGLFGDSPRMANV
                     EAMTPCVVWALRGPRMEELAQRSPALALELLRAAGAVMAVRMRATLSRQAPIT"
     gene            complement(5631..7076)
                     /gene="mnmE"
                     /locus_tag="VF308_07985"
     CDS             complement(5631..7076)
                     /gene="mnmE"
                     /locus_tag="VF308_07985"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019573781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEX7436630.1"
                     /translation="MADQQAARRDREVAAGAAAQPIVAIATASGRGAVGIVRVSGPDL
                     APLIEALCGRLLEARRATYLPFIGADGRPIDQGLAIHFPAPHSYTGEAVLELQAHGGT
                     VLLQLLLARCLEAAAETDPRTGAARLPGLRLAEPGEFTARAFLNDKLDLAQAEAVADL
                     IDASTEAAARSASRSLSGAFSVEVNALRDQLIDLRMLVEATLDFPDEEIDFLDKADAH
                     GRLERIDAAVGAVLERARQGVLLREGITVVLAGQPNVGKSSLLNALAGAELAIVTAVP
                     GTTRDKVAGTIQIEGVPVHVVDTAGLRDGADEVERIGIARSWSEIANADAVIFLHDLT
                     RLDEASYAEAEARLGERMPAGLSATGRLLHVYNKADLGFMAPPGQGLALSARTGQGLD
                     ALRRRLLDLVGWRAQPEGVFIARTRHLEALRRTREHLRLAAAHAARRDAALELLAEEL
                     RLAHDALGEITGAFTPDDLLGVIFSRFCIGK"
     gene            complement(7037..>7446)
                     /gene="yidC"
                     /locus_tag="VF308_07990"
     CDS             complement(7037..>7446)
                     /gene="yidC"
                     /locus_tag="VF308_07990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0051205 - protein insertion into membrane
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEX7436631.1"
                     /translation="QQEMMRIYREEKVNPLGGCLPIVVQMPFFIALYWVLLSSVEMRH
                     APWIGWITDLSAKDPYFILPLLMTATSVFQVWLNPTPPDPVQAKMMWIMPLVFSVMFF
                     VFPAGLVLYWLTNNILSITQQWLINKQLGVIGK"
BASE COUNT         1115 a         2620 c         2584 g         1127 t
ORIGIN      
        1 tttcaccccg ctcggccgca gctcgccacg cagactctcg cagtagccga tgacggccgc
       61 cttactcgag caataggcag cgtggcccgg caggccccgg atgcccgcga cgctgccgat
      121 ccccacgagc gtgcccgagc ggcgctcggt catcggcgcg acgaaaggct ggaacgtcgc
      181 ggcgaggccg atgttgttgg tctcgaacgt cgcgcgcatc acttctagat cctcgtagac
      241 cgcggtgtcc atgccgacgc tgatgccggc attggcgatc acgacgtccg gcacgccctg
      301 cgccgcgatg cacgcgcgac cggcgccggt gatcgcagcg acatcgcgga catcggcgcc
      361 gtagaccctg aaggtcgatg gctcgagccg cgcgccttcg gcccaggcct gaacctcggc
      421 cgcgcgccgt gccacgagtg caaggcggta cccggcgcgc tgaaagcgtg ccgcaaggcc
      481 ctggccgatg ccgctcgaag cgccggtgat gaacaccagc ggtgccgtca tggccgggcg
      541 ccgcgcgagg ctgcattcgt tcgggttcgc atcgggctcc tcacttgcgc ggcttgcgcg
      601 ccgggaccgc gaagacggcg cgcatgcggc ccttcagatc gacgacacgc gccagattgt
      661 catattccat cccggccgcc tgcacctcgg ttgccccttg cgtcacccgc accggaaggt
      721 gcgagcggac ccgctcggtg gcgagaaaca catgcaggaa gtcgccgcga aactcgatcg
      781 cctcctccgc tcctgtggcc tcgcggatca cgtgggcgcc gacgagcagc tggacctcgc
      841 tgccatcgcc gttggcgagt gcgcgctcgg ccgaggcgag cgtcacacga ccgttcgccg
      901 cgatcgcgcg gatgcgcgga tgttcgatct cgagcgtatc ggtgtccgga tagtgcaagg
      961 cgacgtcgcc ctcgatctgc gtgcgcatcg ttccgtcgcg ggcaaaccgc tggaccacga
     1021 actcgcgcat cgtgtagtcg ggttcgtgcc gcggcggcgc ctcggcgccc ggctcgccgg
     1081 caagcggcgt gttctcgacg agccaccagc tgaggagcgc gagcagcgcc atcacgagca
     1141 agggcagata ggccgtgagc aggccgccca ggcgcaccag ccacggcgcg gccggcacgc
     1201 gaagggcgac cgccggcggc gtggcggcgg tcgcctcgtt cacgcggaac ggtccagagt
     1261 gatcaggtcg gtgcgcagca gttcggcata gcgcccggcc gcggtcagca gcaggtcgca
     1321 acactcgcgc gcggcgccat gtccgccggg cgcgctcgtc acgtggtcga cgagggcgcg
     1381 aacctcgagg tgcgcgttcg gcggcgcgca ggcgaacccg gccctggcga gcagcggcag
     1441 atcgggccaa tcgtcaccca tcaccgcgag cgcgtcccac tcgatgccga gctgggcgag
     1501 caacggcgtc gcggcggcga gcttgtcgcc gacgccatag agcgcgtgca tgatgccgag
     1561 gtcggccatg cggcgccgca gcgcgggcga atcgcggccg ctgatcacga gcggcacgat
     1621 gccgccgcgg gcgagcagct tgagcccgtg gccgtcgagg gtcgagaagg ccttcagcac
     1681 ctcgccgtgc tcgttcaggt agatgctgcc gtcggtgagg acgccgtcga catcgaagat
     1741 cgccgcgcgg atgccggctc ccgggccgcg cgccgcgagc agcaattcgg gctcgaacgt
     1801 cagcgtcggt tcgatcgggc gcatcggcat gtcagatcac cttggcgcgc atcaggtcgt
     1861 tcgaattcag cgcgccgcac agcacatccc gcgcgtcgac gaccagcacg ctcgtgatgc
     1921 ggtgctgttc catcacctgc gccgcatcga ccgcgagcgc gtcggcgcgc accagcttcg
     1981 gcccggtgtg cagcacctcg cccgcacgca gcgcgcgcaa gtcgacaccg cgctcgatca
     2041 ggcgccgcag gtcgccgtcg gtgaagatgc cgaggacacg cccgtcagcg ccggccaccg
     2101 cggtgaagcc caggcccttg ccggtcattt cgcgcagcat ttcggtgaac gatgtctccg
     2161 ggccgacctg gggcaccgca tcgccgctgc gcatcaggtc gcgcacgtgg atgaggagct
     2221 tcctgccgag gctgccgccg gggtgggaac gggcgaagtc ttcttcgcga aagccgcgcg
     2281 catcgagcag cgcgaccgcg atcgcatcgc cgagcgccat ctgcgcggtc gtgctggcgg
     2341 tgggcgccag attgagcggg caggcttcct ggtcgacctc gctcgacagc gcgatgtcgg
     2401 catgctccgc gaggctgctg tcggcgcgcc cggtcatggc gatgagcgtg acgccgatcc
     2461 gcttgatcgc cggaacgatc gccgcgagtt cgtcgctttc ccccgagttc gagatcgcca
     2521 gcacgacatc gcccgtcgtc accatgccga ggtcgccgtg gctcgcctcg cccgggtgca
     2581 cgaacatcgc cggcgtgccg gtggaggcga gcgtggccgc gatcttgcga cccacgtggc
     2641 cgctcttgcc catgcccatc acgacgacgc gaccgcggca cgcgagcatc gcctgcaccg
     2701 cacgcgcgaa accctcgcct tggcgcgcct tcagcccgag cagggcgcgc gcctcgatgt
     2761 cgagcgtggc gcgcgccagc tggagcgcac gctcggaatc gaatgagggt attgcagaca
     2821 ctggatggcc gatgcgcccg gtaggatcgg tcgattctag ggttgcccgc gggcgcgcca
     2881 gacgcgctgc cttctgaccg catcgcacct catggccacg acgctcgaac tggtcctgct
     2941 ctacctgctc gccgcggtcg ccggcgcggt cgtgtgtcgc ctcgcacgcc tgccgccgat
     3001 gctcggctat ctggccgtcg gcgtgctgat cggcccgaac gcaatggcgc tggccaagga
     3061 ttctgccgcg gtgagctatc tcgccgaatt cggcgtcgtc ttcctgatgt tcgtcatcgg
     3121 cctcgagttc aacctgccca agctgcgcag catgaggaag ctcgtcttcg gtctcggcct
     3181 gagccaggtg gccctgacga cgctggccgt cctgctcggc aacgccctcc tggcctgggg
     3241 cgccatgcgg gccgggcggg cctggggcct gtcctggcaa agcgccatcg cgctcggcgg
     3301 cgcgctcgcg atgagcagca ccgcgatcgt cgtcaagctg atggccgagc gcctcgagct
     3361 cgaaagcgaa cacggccgcc gcgtcatggg cgtgctgctg ttccaggatc tcgccgtggt
     3421 gccgctcctc gtgctgatcc cggcgctcgg ctcgtcccct gaggtgctgc tgcgcgaact
     3481 cgcgctcgcc gccctgaagg cgggcgtgct gctggcggtg ctgctggtcg gcggccagcg
     3541 cgtgatgcgc ggctggctca ccctcgtcgc gcgcaggaag agcgaggagc tcttcatcct
     3601 caacctgctg ctggtgacgc tcggcctggc ctggctcacc gaatccgcag gcctttcact
     3661 agccctcggc gcgtttgtcg ccggcatgct gatcgccgag accgaataca agcatcaggt
     3721 cgagaccgac atccgaccct tccacgacgt gctgctcgga cttttcttca tcaccatcgg
     3781 catgaagctc gatgccgcgg cggtggtccg ggagtggccg ctggtgctgt tgctgacggt
     3841 catgccggtg ctcttcaagt tcgcgctcgt caccgcgctg gcgcgactct tcggggccgc
     3901 gcccggagtc gccctgcgca ccgggctcta tctcgcccag gccggcgagt tcggtttcgt
     3961 gctgctgacc ctcgccacgc agcagcggct cctgcccgcg ccgctgcaaa gtccggtgct
     4021 cgcgagcatg gtgttgtcga tgctcgccac gccgctcctg atccactaca gcaaccgcat
     4081 cgtgatgcgg ctttcgagca acgactggct gatgcaatcg gtggcgatga cgacgatcgc
     4141 caagcgcacg atcaacaccg ccgggcacat catcatcgcc ggcttcgggc gcagcggcca
     4201 gaacctggcg cgactgctcg aggcggagaa gatcgcctac atcgcactcg atctcgatcc
     4261 ggatcgggtg cgccaggccg ccgccgccgg gcagagcgtc gtcttcggcg acgcagcgcg
     4321 cctgcagagc atgatggcgg ccggcctcgg ccgcgcccgt gcggtcgtca tcagctatca
     4381 cgacacgcct tcggccatga aagtcctgca gatcgtgcgc gcccaggcgc cgaaggtgcc
     4441 ggtcatcgtg cgcaccctcg acgacagcga tctcgagcgc ctgcaggccg ccggggcgac
     4501 cgaggtcgtt cccgaggcga tcgaaggctc cctgatgctg gcgagccacg cgctggcgct
     4561 ggtcggcgtg ccgatgcggc gcgtcctgcg cgtggtgcag caacagcgcg acgcgcgcta
     4621 tggcctgctg cgcggctact tccacggtgc cgacgacgac accgtcgacg aactccagca
     4681 cgcccgcctc ctgagcgtca ccctgccggt gacggcaggc tcggtcggcc atccgctcgg
     4741 cagtcaaccg ctcggcgcgg acgaggtgac ggtggtctcg gtgcgccgcg cctccggcgc
     4801 cgtgacacac gcggacccgg cgctcgtgct cgcggccggc gacacgctgg tgctgtcggg
     4861 cttgcccgag ccgcttgcgc gcgccgaagc ggccctgctc gcgagcgccg cgtgatcggg
     4921 agcccggggg cgccgcgtcc gcggcgcccc cgaccgctca ggtgatgggg gcttggcgcg
     4981 acagggtcgc gcgcatgcgc acggccatca ccgcgccggc agcgcgcagc agttcgagcg
     5041 cgagtgcggg cgagcgctgc gccagctctt ccatgcgcgg gccgcgcagc gcccagacga
     5101 cgcagggcgt catcgcctcg acgttcgcca tccgcggact gtcgccgaaa agtcccggct
     5161 cgccgacgac ggcgcccgcg cgcaggatcg cgacacgatt gctgccaggc gggccgccgg
     5221 tcacgaatat ctgcatgctg ccctgggcga ggaaatacat cgaacgatcg gcgtcgccct
     5281 gcttgatcag caaatcgccg gcgcggatct cgtggcgccc cagatagggc gccaaggtgc
     5341 gccattgatc gagcgagagg cgcgcacgaa acgcatcctc cgcattcagg gtctgcaccg
     5401 cctgcaccaa ctcgtcgatt tccatgggcc tcccgcgcgg cggaccgtcg atcgcggcca
     5461 cttgcacttc ggccgaatta tgagcgcccg cacggaccga aaagcgggtg gattcgcgga
     5521 gggtcgcgcc atctgtcaac cggcctgatc cgctcgtcgc cttgtgcttg aaacggcgtg
     5581 aaggcctgga gagggttgca caagttcgct gccggcgcgg gccagcgccc tcacttgccg
     5641 atgcaaaaac ggctgaagat gacgccgagc agatcgtccg gcgtgaacgc gccggtgatc
     5701 tcgccgagcg catcgtgagc gaggcgcagc tcctcggcca gcaattcgag cgcggcatcg
     5761 cgccgcgccg cgtgcgccgc ggcgagccgc aagtgttcgc gcgtgcggcg caaggcctcg
     5821 aggtgacggg ttcgcgcgat gaacacgccc tcgggctggg cgcgccagcc gacgaggtcg
     5881 agcaggcggc ggcgcagggc gtcgagcccc tggccggttc tcgccgaaag cgcgagcccc
     5941 tggccgggcg gggccatgaa gccgaggtcg gccttgttgt agacgtggag caggcggccg
     6001 gtggccgaga gacccgccgg catgcgctcg cccaggcgcg cctcggcctc ggcatacgac
     6061 gcctcgtcga ggcgcgtcag gtcatgcagg aagatcaccg catcggcatt cgcgatctcg
     6121 ctccagctgc gcgcgatgcc gatgcgctcg acctcgtcgg cgccgtcgcg cagccccgcg
     6181 gtgtcgacga catgcaccgg cacgccttcg atctggatcg tcccggcgac cttgtcgcgg
     6241 gtagtgccgg ggaccgccgt cacgatcgcc agctcggcgc cggcaagcgc gttcagcaag
     6301 gagctcttgc cgacattggg ttggccggca agcacgaccg tgatgccctc gcgcaggagc
     6361 acaccctggc gggcacgttc gagcacggcg ccgaccgcgg cgtcgatgcg ctcgagccgg
     6421 ccatgcgcat cggccttgtc gaggaaatcg atctcctcgt ccggaaaatc gagggtcgcc
     6481 tcgaccagca tgcgcaagtc gatcaactgg tcgcgcaggg cgttcacttc gaccgaaaac
     6541 gcgccgctga gcgagcggct cgccgagcgc gccgccgcct cggtgctcgc gtcgatcagg
     6601 tcggccacgg cttcggcctg ggccaggtcg agcttgtcgt tgagaaaggc gcgcgcggtg
     6661 aactcgccgg gttcggccag gcgcaggccg ggcaggcgcg cggcccccgt gcgcgggtcg
     6721 gtttcggcgg cggcttcgag gcagcgcgca agcagcaatt gcagcagcac cgtgccgcca
     6781 tgcgcctgca attcgagcac cgcttcgccg gtgtaggaat gcggcgccgg aaaatggatc
     6841 gcgagcccct ggtcgatcgg ccggccatcg gcgccgatga agggcagata ggtggcccgg
     6901 cgcgcctcca gcaggcggcc gcacaacgcc tcgatcagcg gcgcaaggtc gggacccgag
     6961 acgcgcacga tgccgacggc gccgcgtcca ctcgcggtcg cgatcgcgac gatgggttgc
     7021 gccgcggcgc ccgccgctac ttcccgatca cgccgagctg cttgttgatc agccactgct
     7081 gcgtgatcga gaggatgttg ttggtcagcc agtacagcac gaggccggcc gggaaaacga
     7141 agaacatcac cgagaagacg agcggcatga tccacatcat cttggcctgg accggatcag
     7201 gcggcgtcgg attgagccag acctggaaca cgctggttgc ggtcatcagc agcggcagga
     7261 tgaaatacgg atccttggcc gagaggtcgg tgatccagcc gatccatggc gcgtggcgca
     7321 tttcgacgct cgacagcagc acccaataaa gggcgatgaa gaacggcatc tgcacgacga
     7381 tcggcaggca gccgccgagg gggttgacct tctcctcgcg gtagatgcgc atcatctcct
     7441 gctgca
//
LOCUS       DASVHM010000422         1565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1113598, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000422 DASVHM010000000
VERSION     DASVHM010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1113598"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..302)
                     /locus_tag="VF308_07995"
     CDS             complement(<1..302)
                     /locus_tag="VF308_07995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019573597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HEX7436632.1"
                     /translation="MPALRAAPIKPDAKSALIVVDVQNCFVTGGTLAVKDGEQVVPII
                     NKLASAFENVVITQDWHTPGHISFASAHAGKKPFETTKLAYGNQVLWPDHCVQGTP"
     gene            complement(418..1023)
                     /locus_tag="VF308_08000"
     CDS             complement(418..1023)
                     /locus_tag="VF308_08000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid synthesis family protein"
                     /protein_id="HEX7436633.1"
                     /translation="MLYPAAGTHPAIDVRKLVLSVEEVWHDGGPRARVPLRRGSIAAL
                     LHNPYAGAYVEDIQPMMEALKPLGREMAQRLITALGGPAAIEGYGKGALIGLDGELEH
                     GALWHVPGGYGMRDLLEGSHAIVPSTTKIGAAGASIDIPIHHRVAAYVRSHFDSLEVR
                     VADGPRADEMLLALAMTTGPRPHARVGGLRVDEISKFDGQR"
     gene            complement(1026..>1565)
                     /locus_tag="VF308_08005"
     CDS             complement(1026..>1565)
                     /locus_tag="VF308_08005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0280 family protein"
                     /protein_id="HEX7436634.1"
                     /translation="VRVGLFADLARFDPTVANLRTDADFAVDSTLPVRGIATSGWRGR
                     SFSLGIADSVTVLAATASAADAAATVIANAVDADDPRIRRSPANRLRDDSDLGARLVT
                     CDVPLLSWPVVARALAAGAAVAEAEIEAGRALGAALCLQGRVRTCALAAAFDTLAHGP
                     QAARIGAALGNAVPRSIRM"
BASE COUNT          228 a          531 c          581 g          225 t
ORIGIN      
        1 tcgggcgttc cctgcacgca gtggtcgggc cacagcacct ggttgccgta ggcgagcttg
       61 gtggtctcga acggcttctt gccggcatgc gccgaggcga acgagatatg tccgggagtg
      121 tgccagtcct gcgtgatgac gacgttctcg aacgcggacg cgagcttgtt gatgatcggc
      181 acgacctgct ccccgtcctt cactgccagc gtgccgccgg tgacgaagca gttctgcacg
      241 tcgaccacga tcagcgcgct cttcgcatcg ggtttgatcg gggccgcgcg cagcgccggc
      301 atcacgccga gcagaaccag accggcgccc gcggacccga ggcccgcgac gaacttcctg
      361 cgttgcatct ccatcatgat tcctccgtgg ttgaaaggag gcgctgcgtc cccggcgcta
      421 gcgctggccg tcgaacttcg aaatctcgtc gacccgcagg ccgccgaccc gcgcgtgcgg
      481 ccgcggtccg gtcgtcatgg cgagcgcgag cagcatctcg tcggcgcgcg gaccgtccgc
      541 gacgcgcacc tcgaggctgt cgaaatggct gcgcacatag gcggcgacgc ggtggtggat
      601 cgggatgtcg atggaggcgc ccgcggcgcc gatcttggtg gtcgagggca cgatggcgtg
      661 cgaaccctcg agcaggtcgc gcataccgta gccgcccggc acgtgccaga gcgcgccgtg
      721 ttcgagttcg ccgtccaggc cgatgagcgc acccttgccg tagccttcga tcgcagccgg
      781 accgccgagc gccgtaatga gccgctgcgc catctcgcgg ccgagcggct tcagcgcctc
      841 catcatcggc tggatgtctt cgacataggc gccggcgtag gggttgtgca gcagcgcggc
      901 gatgctgccg cggcgcagag gcacgcgggc gcgcgggccg ccgtcgtgcc agacctcctc
      961 gaccgagaga acgagcttgc ggacgtcgat cgcgggatgg gtgccggcgg cgggatagag
     1021 catggtcaca tcctgatcga gcgtgggaca gcgttgccaa gagccgcgcc gatgcgcgcg
     1081 gcttgcgggc catgcgcgag cgtatcaaac gcggcggcga gcgcgcaggt gcgcacccgg
     1141 ccctgcaggc aaagcgcggc gccgagcgca cgtccggcct cgatctcggc ttcggccacg
     1201 gccgcgccgg cggccagcgc gcgggcgacg accggccacg acagcaaggg cacgtcgcag
     1261 gtcaccaggc gcgcgccgag atcgctgtca tcgcgcaggc ggttcgccgg ggagcggcgg
     1321 atgcgcgggt cgtcggcatc gacggcgttg gcgatgacgg tggccgctgc gtcggcggcc
     1381 gaggccgtcg ccgcgagcac cgtgacgctg tcggcgatgc cgagcgagaa gctgcgcccg
     1441 cgccagccgc tggtggcgat gccgcgcacc ggcagcgtcg agtccacggc gaagtctgca
     1501 tcggtgcgca ggttggctac ggtcgggtcg aagcgcgcca ggtcggcgaa caggccgacg
     1561 cgcac
//
LOCUS       DASVHM010000423         2108 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_247123, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000423 DASVHM010000000
VERSION     DASVHM010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247123"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            136..471
                     /gene="yidD"
                     /locus_tag="VF308_08010"
     CDS             136..471
                     /gene="yidD"
                     /locus_tag="VF308_08010"
                     /inference="COORDINATES: protein motif:HMM:TIGR00278.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEX7436635.1"
                     /translation="MLKAGSLALIGAYQRYVSPHKGYGCAYRASTGGRSCSRYAQRAI
                     SRAGLWPGLILLRHRLRACAGAAMALAEAPKESLEETVFGECAPAVREGRKLCCGSLI
                     GGISNGEDT"
     gene            535..1821
                     /locus_tag="VF308_08015"
     CDS             535..1821
                     /locus_tag="VF308_08015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEX7436636.1"
                     /translation="MTDHPHDPHTSVATLGNGVRVVAIRLPYLETASVSVFVRSGSQH
                     ESGRQSGISHVVEHMAFKGTHERDCQQINLDAERLGADVNAHTDKDHTAFHMSGMGRH
                     AGRFVAMLGDIVQGSTFPEAELERERQVILHEVTEDEDDALSTAYKLFDKTCFGEHPI
                     ARPVIGTRRNIQRFTRAELIGYVQRQYTATNVVVGVAGNVDPERVLKDAQAAFGSMPR
                     GSENVVAAPAYLGGIASRRQAGCSQTHVVLGFPIPALKADDHASVVAAALFGEGMSSP
                     LMDQIRERRGLVYYAACSADVLELCGQFVIEATTVPQHLDEFFAEVARLLAVHAESSD
                     AVGLERARNQIAVRMLRAQERPLRRLEDAALHLFVHGRVRSRAELMARIEAVSAGQVR
                     DAFARMLASGASIAIAGKVGKGANDRFRSALVAPHR"
     gene            1973..>2108
                     /locus_tag="VF308_08020"
     CDS             1973..>2108
                     /locus_tag="VF308_08020"
                     /EC_number="1.11.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013397080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004096 - catalase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEX7436637.1"
                     /translation="MSTPDQSTALTTAAGIPVADNQNSITAGPRGPVLLQDFHLIEKL
                     Q"
BASE COUNT          365 a          750 c          681 g          312 t
ORIGIN      
        1 gcgctgcagc tcgacgcgat cgccgtctac ggcaagcgcg cgaccggcgc gaagtatctc
       61 gtcaacccga acaagggcat cgccgcgtag ccgatcttcc gatcggcgaa aggcccacac
      121 cgatagccct ttcccatgct caaagccggc agcctcgccc tcatcggcgc ctaccagcgc
      181 tacgtgtctc cgcacaaggg ctacggctgc gcctaccgcg cgagcacggg cggacggtcg
      241 tgctcgcgct atgcccagcg cgcgatctcg cgcgccggct tatggcccgg cctgatcctg
      301 cttcggcatc gcctgcgcgc ctgtgccggc gcggccatgg ctctcgccga ggcgccgaaa
      361 gaatcgctcg aggaaaccgt cttcggagag tgcgcgcccg ccgttcgcga aggccgaaag
      421 ctgtgctgcg gcagcctcat cggcggcatc tcgaacggtg aagacaccta ggccaggacc
      481 acgaaacgca tcgaccgaca gggtcgcgcg cccggcgcca caatggcgcc tcccgtgaca
      541 gaccaccccc acgaccccca cacctcggtg gccaccctcg gcaacggcgt acgcgtcgtc
      601 gcgatcaggt tgccgtacct cgaaacggcg agcgtcagcg tcttcgtgcg ctccgggagc
      661 cagcacgaga gcgggcgcca gagcggcatc agccacgtcg tcgagcacat ggcgttcaag
      721 ggcacccacg agcgcgactg ccagcagatc aacctcgatg ccgagcggct cggcgccgac
      781 gtcaacgccc acaccgacaa ggaccacacc gccttccaca tgtccggcat gggccggcac
      841 gcggggcgtt tcgtggcgat gctgggagac atcgtgcagg gcagcacctt tcccgaggcc
      901 gagctcgagc gcgagcgcca ggtcatcctg cacgaagtca ccgaagacga agacgatgcc
      961 ctctcgaccg cctacaagct gttcgacaag acctgcttcg gcgagcatcc gatcgcccgg
     1021 ccggtcatcg gcacgcgccg caacatccag cgcttcaccc gcgccgagct gatcggctac
     1081 gtgcaacgcc agtacaccgc gacgaacgtg gtcgtcggcg tggccggcaa tgtcgatccc
     1141 gaaagggtcc tgaaggacgc gcaggcggcg ttcggctcga tgccgcgggg cagcgagaac
     1201 gtggtggcgg cgccggccta cctcggcggc atcgcctcgc gccgccaggc cggctgcagc
     1261 cagacccacg tggtgctcgg tttcccgatc ccggcgctca aggccgacga ccatgccagc
     1321 gtggtcgcgg cggccctctt cggcgaaggg atgagctcac cgctgatgga ccagatccgc
     1381 gagcgacgcg gcctcgtcta ctacgccgcc tgctcggccg atgtgctcga gctgtgcgga
     1441 cagttcgtga tcgaagcgac gacggtgccc cagcacctcg acgagttctt cgccgaggtc
     1501 gcgagattgc tggccgttca tgccgaatcg agcgacgcgg tgggtctgga gcgcgcccgc
     1561 aaccagatcg ccgtgcgcat gctgcgcgcg caggagcggc cgctgcggcg cctggaagac
     1621 gcggcgctcc acctgttcgt gcacggacgg gtgcgctcgc gcgcggaact gatggcgcgc
     1681 atcgaggcag tcagcgccgg ccaggtccgc gacgcgttcg cacgcatgct cgcctctggc
     1741 gcgtcgatcg cgatcgcggg caaggtgggc aaaggtgcga acgaccgatt ccggtcggcg
     1801 ctggtcgcgc cgcatcgcta gaaggggttt cgatggtgga gcgattcgcc gttgcggatc
     1861 gacgattaag ttcaactatc gatgctctag gatcaattga ctttccaata gcgcgcccgc
     1921 tgtttagatt tgcgttcgtc cacccgatcg tggaagccaa cggagaacgc ccttgagcac
     1981 gccagaccag tccaccgcct tgaccaccgc cgccggcatt ccggtcgcgg acaaccagaa
     2041 ctcgatcact gccggcccgc gcggcccggt gctgctgcag gacttccacc tgatcgaaaa
     2101 gctccagc
//
LOCUS       DASVHM010000424         2929 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_392379, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000424 DASVHM010000000
VERSION     DASVHM010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2929
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392379"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..963
                     /locus_tag="VF308_08025"
     CDS             <1..963
                     /locus_tag="VF308_08025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007880322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX7436638.1"
                     /translation="KLAAALAAGCSIIVKAPEETPGSPAELIRAFADAGVPAGAVNLV
                     YGDPAAISSYLIPHPVIRKISFTGSTVVGKQLAALAGQHMKRVTMELGGHSPVLVFDD
                     ADVDRAADQLVMYKGRNAGQVCVAPSRFFVQKKAYDRFVERFAKAYGALQLGDGLDAA
                     TVMGPLAHARRVDSMQQFVEDAKRRGGQVVVGGERLARPGNFFPPTVITGLPDDSKLM
                     TEEPFGPVAPITPFDDIDEVLKRANALPFGLASYVFTGSLHTAQKVSTHLEAGMVNIN
                     HFGMALAETPFGGIKDSGMGSEGGMETFDGYLVTKFISEMGLPG"
     gene            987..1859
                     /locus_tag="VF308_08030"
     CDS             987..1859
                     /locus_tag="VF308_08030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007832654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436639.1"
                     /translation="MDLTTFLIQCLNAVQYGLLLFLLASGLTLIFGIMGVINLAHGSF
                     YMLGAYLAFALAPLFGQQFLVMLACGALLAFVFGYLLEWAFFSFLYQRDHLQQVLMTY
                     ALILVFEELRSILVGNDVHGVQPPAWLSGTIALGDRMTYPTYRLFASAACIVIAAGLY
                     FVVNRTRLGMMVRAGASNRDMVRGLGVDIRLLYRAVFAAGVALAALAGMIAAPLSSVY
                     PGMGGSVLIICFVVVVIGGIGSISGALIASLMVGFVDTFGKVFFAELSGIGIYVLMAV
                     ILIWRPEGLAKRGP"
     gene            1859..2851
                     /locus_tag="VF308_08035"
     CDS             1859..2851
                     /locus_tag="VF308_08035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007832655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436640.1"
                     /translation="MRDFARSAASWIVPLAALALLAGVPFVAGEYLQDLVVKIVILAI
                     FALSLELLVGTTGLVSLGHAAFLGIGAYAAVLAAPKAGAGSLPVLLAISMACAAAYAV
                     FVGALSLRTRGVYFIMVTLAFAQMAYFIFHDTRLGGGSDGIYLNVKPVLGSLLDLKDR
                     NQFYYFALGALALTYALLAALLRSRFGHALAGIRINERRMRAAGFRTYGFKLAAFVVA
                     GTLAGLAGFLIAVRDGFVNPEMLAWQESGTVLLMLILGGLGHLRGAVLGAIVFTLLKE
                     LYSSQGLVGPLADHWQLALGLTIIAFVAALPKGLIGLPALLRGRPRIAVVVDDE"
BASE COUNT          365 a         1026 c          977 g          561 t
ORIGIN      
        1 aagctcgccg ctgcgctcgc cgcgggctgc tcgatcatcg tcaaggcgcc cgaggagacg
       61 ccgggctcgc ccgccgagct gatccgcgct ttcgccgatg ccggcgtgcc ggccggcgcg
      121 gtcaacctgg tctacggcga cccggccgcg atctcgtcgt acctgatccc gcatccggtc
      181 atccgcaaga tctcgttcac cggctcgact gtcgtcggca agcagctcgc cgcgctcgcc
      241 ggccagcaca tgaagcgcgt gacgatggag ctcggtggcc attcgccggt gctggtgttc
      301 gacgatgccg acgtcgatcg cgccgccgac cagctcgtga tgtacaaggg ccgcaacgcc
      361 ggccaggtgt gcgtcgcgcc gagccgcttt ttcgtgcaga agaaggccta cgaccgcttc
      421 gtcgagcgct ttgcgaaggc gtacggcgcg ctgcagctcg gcgacgggct cgacgccgcg
      481 accgtgatgg ggccgctcgc ccatgcgcgg cgcgtcgatt cgatgcagca gttcgtcgag
      541 gacgcgaagc ggcgcggcgg ccaggtcgtc gtcggcggcg agcggctggc gcggccgggc
      601 aacttctttc cgccgaccgt catcaccggc ctgcccgacg attcgaagct gatgaccgag
      661 gagccgttcg gcccggtcgc accgatcacg ccgttcgatg acatcgacga ggtgctcaag
      721 cgcgccaacg cgctgccgtt cggcctcgcg tcgtacgtgt tcacggggtc gttgcacacc
      781 gcgcagaagg tgtcgacgca tctcgaggcc ggcatggtca acatcaacca cttcggcatg
      841 gcgctggccg agacgccgtt cggcggcatc aaggacagcg gcatgggcag cgagggcggc
      901 atggagacgt tcgatggcta cctcgtcact aagttcatct cggagatggg cctcccgggc
      961 tgaggcgggc gatctcgctc tgcgccttgg acctgaccac ctttctcatc cagtgcctga
     1021 acgccgttca gtacgggctg ctgctgttcc tgctcgccag cggtctgacg ctgatcttcg
     1081 ggatcatggg cgtgatcaac ctcgcccacg gcagcttcta catgctgggg gcctacctcg
     1141 cgttcgcgct cgcgccgctg ttcgggcagc agttcctcgt gatgctggcg tgcggggcgc
     1201 tgctggcctt cgtgttcggc tacctgctcg aatgggcctt cttcagcttc ctgtaccagc
     1261 gtgaccacct gcagcaggtg ctgatgacgt atgcgctgat cctcgtcttc gaggagctgc
     1321 gcagcatcct cgtgggcaac gacgtgcacg gcgtgcagcc gccggcctgg ctctccggca
     1381 cgatcgcgct cggagaccgg atgacctacc cgacctatcg cctcttcgcg agcgccgcct
     1441 gcatcgtgat cgcggccggg ctctacttcg tcgtcaaccg cacgcgcctg ggcatgatgg
     1501 tgcgcgccgg cgcgagcaac cgcgacatgg tgcgcggcct cggcgtcgac atccgtctgc
     1561 tctaccgcgc ggtgttcgct gccggcgtgg cgttggcggc cttggccggc atgatcgccg
     1621 cgccgctgtc gtcggtctat ccgggcatgg gcggcagcgt cctgatcatc tgcttcgtcg
     1681 tcgtcgtgat cggcggcatc ggctcgatca gcggcgcgct gatcgcgtcg ctgatggtcg
     1741 gcttcgtcga cacattcggc aaggtctttt ttgccgagct gagcggcatc ggcatctacg
     1801 tgctgatggc ggtcatcctg atctggcgcc ccgaagggct cgccaagcgg ggcccttgat
     1861 gcgggacttc gcgcgttccg ccgcgtcctg gatcgtgccc ctcgccgcgc tggcgctgct
     1921 cgccggcgtg cccttcgtcg ccggcgaata cctgcaggac ctggtcgtga agatcgtgat
     1981 cctcgcgatc ttcgccctca gcctcgaact gctggtcggc accaccggtc tcgtcagcct
     2041 cggccacgcg gcgttcctcg gcatcggtgc ctacgcggcc gtgctcgcgg caccgaaggc
     2101 gggggccggt tcgctgcccg tgctgctcgc catctcgatg gcctgcgcgg ccgcctatgc
     2161 cgtcttcgtc ggcgcgctca gcctgcgcac gcgcggcgtc tacttcatca tggtcacgct
     2221 cgcgttcgcg cagatggcgt atttcatctt ccacgacacc aggctcggtg gtggcagcga
     2281 cggcatctac ctgaacgtca agccggtgct cggttcgctg ctcgatctga aggatcgcaa
     2341 ccagttctac tacttcgcgc tcggcgcgct cgcgctcacc tacgccctgc tcgccgcgct
     2401 gctgcgctcg cgcttcggcc acgcgctcgc cggcatccgc atcaatgagc ggcgcatgcg
     2461 cgccgccggc tttcgtacct acggcttcaa gctcgcggcc ttcgtcgtcg ccggcacgct
     2521 ggcggggctc gccggattcc tgatcgccgt gcgcgacggc tttgtcaacc ccgagatgct
     2581 ggcctggcag gagtcgggca ccgtgctcct gatgctgatc ctgggcggcc tcggccacct
     2641 gcgcggcgcg gtgctcggtg cgatcgtgtt cacgctgctc aaggaactct attcgtcgca
     2701 gggccttgtt ggcccgctcg ccgaccactg gcagctggcg ctgggcctga ccatcatcgc
     2761 tttcgtcgcc gcgctgccga aagggctgat cggcctgccg gcgctgttgc ggggccggcc
     2821 gcgcatcgcc gtggtggtcg acgatgaatg agccgcgcgc cgcgtctgcc ggcatcctgc
     2881 tgcaggcggt gaacctgacg cgtcgcttcg gcggcctggc cgcggtcga
//
LOCUS       DASVHM010000425         3122 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_753048, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000425 DASVHM010000000
VERSION     DASVHM010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3122
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_753048"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..165)
                     /locus_tag="VF308_08040"
     CDS             complement(<1..165)
                     /locus_tag="VF308_08040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019430763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase"
                     /protein_id="HEX7436641.1"
                     /translation="MPATLDGQLVVAISSRALFDFEEENQHFEANDDRAYMQLQLERL
                     DRAAKPGVAFS"
     gene            complement(265..1479)
                     /gene="gspF"
                     /locus_tag="VF308_08045"
     CDS             complement(265..1479)
                     /gene="gspF"
                     /locus_tag="VF308_08045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010105630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system inner membrane protein
                     GspF"
                     /protein_id="HEX7436642.1"
                     /translation="MPAYKFEALDASGKSATGLLDADTARAARAQLRAQALVPLAVVP
                     VAAAGTQAEGLRFTRRVFGTTGLAVWTRQLAGLVSSGLPLERALTALADEAEHPRQRE
                     LVAHLRSEVNAGSPFARALASAPREFDDVYRGVVAAGEQSGALGAVLERLADDLEERQ
                     ELKGKLIGATLYPAIVSLIAIVIVIFLVTYVVPQVASVFTSSKRALPMLTTLMLGFSS
                     FLRSYGWLLVLALGAGFGVLTAMLRNAAFRESFDAGWLTLPLVGRLARGYNAARFAAT
                     LSMLAGAGVPILKALQAAAETLSNRAMRADAMDALVQVREGAPLASALAGKKRFPGLL
                     SMFARLGEQTGQLPLMLERAARQLGTEVQRRALQMATILEPLLIVAMGAVVMLIVLAV
                     LLPIIQLNTWVK"
     gene            complement(1510..2931)
                     /gene="gspE"
                     /locus_tag="VF308_08050"
     CDS             complement(1510..2931)
                     /gene="gspE"
                     /locus_tag="VF308_08050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system ATPase GspE"
                     /protein_id="HEX7436643.1"
                     /translation="MGMRHPLPYAYAKAHTLLLEDDGQHLVLWAPETIALPALSEVLR
                     LYEVDAFEREAAATLAGRIAAAYAGSESSAAVVIGEVESAVDLSRMMQELPAIEDLLE
                     ASNDAPIIRMLNALLTQAAKDGASDIHIEPYERSSSVRFRVDGTLREVVQPNKALHAA
                     LISRLKIMAELDIAERRLPQDGRISLRIGGRAVDVRVSTLPSSYGERAVLRLLDKNES
                     KFTLEGLGMSGDVLTRFDRLVHQPHGIVLVTGPTGSGKTTTLYASLGRVDTAGTNVLT
                     VEDPVEYELAGIGQTQVNPRIDLTFAKALRAILRQDPDVIMIGEIRDFETAQIAIQAS
                     LTGHLVLATLHTNDAPSAVTRLTDMGVEPFLLSSSLLGVLAQRLVRKLCPLCKRADDS
                     GRFHPVGCVACGNTGYKGRTGVYELMVADEHVRALIHSHAAESQLFVAAQASGLRSMR
                     EDGERLVEKGITSPEEVMRVTRE"
BASE COUNT          474 a         1044 c         1139 g          465 t
ORIGIN      
        1 cgagaacgca acgcctggct tggccgcccg atcgaggcgc tccagctgca actgcatgta
       61 ggcgcggtcg tcgttcgcct cgaagtgctg gttctcttcc tcgaagtcga acagcgcgcg
      121 cgacgagatc gcgacgacga gctggccgtc cagggttgcg ggcatcgttg gatgatagtg
      181 ggctggtact tgcggtcccc ggagaggtgg gcccacgcga agggacgggc tggcccggat
      241 tccgtcagcg gagaacgcgc agcgtcactt cacccacgta ttgagctgga tgatcggcag
      301 gagcaccgcg agcacgatca gcatcaccac cgcacccatc gccacgatga gcagcggctc
      361 gagaatggtc gccatctgca gcgcgcggcg ttgcacttcg gtgccgagct ggcgcgctgc
      421 gcgctcgagc atcagcggca gctggccggt ctgctcgccc aggcgcgcga acatcgacag
      481 gagtccggga aagcgcttct tgccggcgag cgccgaggcg agcggggcgc cttcgcgcac
      541 ctgcaccagc gcatccatcg cgtcggcgcg catcgcccgg ttcgagagcg tctcggcggc
      601 agcctgcagg gccttgagga tcggcacgcc ggcgccggcg agcatcgaga gcgtggcggc
      661 gaagcgcgcc gcgttgtagc cacgcgcgag ccggccgacg agcggaagcg tgagccagcc
      721 cgcatcgaag ctctcgcgaa acgccgcatt gcgcagcatc gccgtcagca cgccgaagcc
      781 ggcgccgagc gccagcacca gcagccagcc gtagctgcgc aggaaggagc tgaacccgag
      841 catcagggtc gtcaacatcg gcaatgcgcg cttcgagctc gtgaacaccg aggcgacctg
      901 cggcaccaca taggtgacga ggaagatcac gatcacgatt gcgatcaggg acacgatcgc
      961 cgggtagagc gtcgcaccga tcagcttgcc cttgagctcc tggcgttcct ccaggtcgtc
     1021 ggccaggcgt tcgagcacgg cgccgagcgc accgctttgc tcgccggcgg cgacgacgcc
     1081 gcggtagacg tcgtcgaatt cgcgcggcgc gctggcgagc gcgcgggcga acggcgaacc
     1141 ggcgttgact tcgctgcgca ggtgggcgac gagttcgcgc tggcgcggat gttcggcctc
     1201 gtcggcgagc gccgtgaggg cacgctcgag cggcagcccg gacgagacca gcccggccag
     1261 ctggcgcgtc cacacggcca ggccggtggt gccgaacacc cgccgcgtga agcgcaggcc
     1321 ttcggcctgc gtgccggccg cggcaaccgg cacgacggcc agcggcacca gcgcctgcgc
     1381 ccgcaactgg gcacgcgcgg cgcgcgcagt gtcggcatcg agcagcccgg tcgcggactt
     1441 gcccgatgca tcgagcgcct cgaacttgta ggccggcatc gccctagccg gcagcgctcg
     1501 gccgcatcgt cattcgcgcg tgacccgcat cacttcctcg ggcgaagtga tgcctttctc
     1561 gaccagccgt tcaccgtctt cgcgcatcga gcgcaggccg ctcgcctggg ccgcgacgaa
     1621 gagttgcgac tcggccgcgt ggctgtggat cagcgcgcgc acatgctcgt cggccaccat
     1681 cagctcatag acgccggtgc gtcccttgta gccggtgttg ccgcaggcca cgcagccgac
     1741 cgggtggaag cgcccgctgt cgtcggcgcg cttgcacagc gggcagagct tgcgcacgag
     1801 gcgctgggcc agcacgccga gcaggctcga ggagagcagg aacggctcga cgcccatgtc
     1861 ggtgagacgc gtcaccgccg aaggcgcgtc gttggtgtgc agcgtggcga gcacgaggtg
     1921 gccggtaagg gacgcctgga tcgcgatctg cgcggtctcg aaatcgcgga tctcgccgat
     1981 catgatgacg tccgggtcct ggcgcaggat cgcgcgcagc gccttcgcga acgtgaggtc
     2041 gatgcgcggg ttgacctggg tctggccgat gccggcgagt tcgtactcga ccgggtcctc
     2101 gaccgtcagc acgttggtgc cggcggtgtc gacgcggccg agcgaggcgt agagcgtcgt
     2161 ggtcttgccc gaaccggtcg ggccggtgac cagcacgatg ccgtgcggct ggtggacaag
     2221 gcggtcgaag cgggtgagca cgtcgccgct catgcccagg ccctcgagcg tgaacttcga
     2281 ttcgttcttg tcgagcaggc gcagcaccgc acgctcgccg taggaagagg gcagcgtcga
     2341 gacgcgcacg tcgacggcgc gaccgccgat gcgcagcgag atgcgtccgt cctgcggcag
     2401 gcggcgctcg gcgatgtcga gctcggccat gatctttagg cgcgagatca gcgcggcatg
     2461 cagggccttg ttgggctgca ccacctcgcg cagcgtgccg tcgacccgga agcgcaccga
     2521 gctcgagcgt tcgtagggct cgatgtggat gtcgctcgcg ccgtccttcg cggcctgtgt
     2581 caagagcgcg ttcaacatgc ggatgatcgg cgcgtcgttg gaggcttcga gcaggtcctc
     2641 gatcgccggc agctcctgca tcatgcgcga caggtcgacc gcgctctcga cttcgccgat
     2701 cacgaccgcg gcgctcgatt cgctgccggc gtaggcggcg gcgatgcggc cggcgagcgt
     2761 ggccgcggct tcgcgctcga aggcgtcgac ctcgtagagg cgcagcactt cgctgagagc
     2821 cggcagggcg atcgtttccg gcgcccacag caccaggtgc tggccgtcgt cctcgagcag
     2881 cagtgtgtgc gccttcgcgt aggcgtaggg cagggggtgg cgcatgccca tggttcggtc
     2941 gcgatctcag ttggccgggc cgcttgcggc gggcttcggc gcgagcgcgc cggattcggt
     3001 cccgggcgaa ctcggccgca ccgagagcgg gacggccgaa tcgtcgagcc ggcgctccgg
     3061 cggcagcacc ggcgattcgt tgatcggaat cagcaggctg ggcgtcggct gggcgtcctt
     3121 ct
//
LOCUS       DASVHM010000426         1968 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_898661, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000426 DASVHM010000000
VERSION     DASVHM010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_898661"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..618)
                     /locus_tag="VF308_08055"
     CDS             complement(<1..618)
                     /locus_tag="VF308_08055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEX7436644.1"
                     /translation="MRCDRTEAWAALHGHFEAHGRAFDLREAFARDPGRFESMGIEAP
                     EVYADLSKNLLDTATLHFLIDLARECGVEARRDAMFAGAPINSTEGRAVLHTALRAPR
                     GQGPFSDEVHGVLEAMLAYAESVRDTPASGIRHIVNIGIGGSDLGPQMVVPALDAYAH
                     PDLTFHFVANVDGNDIVPVLRRLRPADTLFVIASKTFTTQETMANA"
     gene            complement(1073..>1968)
                     /gene="urtB"
                     /locus_tag="VF308_08060"
     CDS             complement(1073..>1968)
                     /gene="urtB"
                     /locus_tag="VF308_08060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtB"
                     /protein_id="HEX7436645.1"
                     /translation="LGVVFTGLSLGSILLLVALGLAITYGLMGVINMAHGELMMIGAY
                     ATYLVQNAFKAWFPGAFDAYVLVAIPASFLAAALVGAALERSVIRWLYGRPLETLLAT
                     WGISLVLQQGVRSLFGAQNVPVENPKWLSGGVELMSNLTLPFNRIAIIAFAALVLVGV
                     ALVIGRTRLGLFVRGVTQNRPMAACMGVNTARVDTYAFALGSGLAGLAGCALSQVGNV
                     GPDLGQGYIVDSFMVVVLGGVGQLAGTVYAALGLGVLNKLLEGWQGAVLAKIMVLVFI
                     VIFIQKRPQGIFAMKGRSAEA"
BASE COUNT          337 a          671 c          691 g          269 t
ORIGIN      
        1 cgcgttggcc atcgtctcct gggtcgtgaa ggtcttgctc gcgatgacga agagcgtatc
       61 ggcgggcctg agccggcgca ggaccggcac gatgtcgttg ccatcgacgt tggcgacgaa
      121 atggaacgtg aggtccgggt gcgcataggc atcgagcgcc ggcacgacca tctgcggtcc
      181 gaggtcgctg ccgccgatgc cgatgttgac gatgtggcgg atgccgctgg ccggggtgtc
      241 gcgcacgctc tcggcatagg cgagcatcgc ctcgagcacg ccgtgcacct cgtcgctgaa
      301 cggcccctga ccgcgcggcg cgcgcaacgc ggtgtgcagg accgcgcggc cctccgtcga
      361 attgatcggc gcgccggcga acatcgcgtc gcgtcgcgcc tcgacgccgc attcgcgggc
      421 gaggtcgatc aggaagtgca gggtcgcggt gtcgagcagg ttcttcgaca agtcggcata
      481 cacctcgggc gcctcgatgc ccatcgattc gaagcgtccg gggtcgcgcg cgaaggcctc
      541 gcgcaggtcg aacgccctcc catgggcttc gaagtggccg tggagcgcgg cccaggcttc
      601 ggtgcggtcg cagcgcatcg gattcaagtc agtcttccac caggctttgc ctgacccgcg
      661 ccgcatgaag cactccacca gcgccagagc gcgcaaagcc ttgagcggat ggccagctgc
      721 gcttcgctgc gttcgtctga aaggtcgagc gcgcaaagcc acgggcgggt ggccggagac
      781 accggtgcag ctcacgaaaa ctcacggccg gttcccgcag aggcgcgggt gggcggtggg
      841 cgcagcgcct ctgcggcgcc gagcagcgca gcgcagcggg gagggagcgg tacgccgcga
      901 cgacctcgac gtgtctgagg ccctgtaccc ggggccgagt tgtcgaagtc gccccgcgga
      961 gcgagcagcg cagggcagtc ggcccgcagg gacgaccgcc gcagtgaagc ggagcccgcc
     1021 gcccgcccgc gcctctgcgc gctcgagcgt cgaactcctc gtggcgcctc atctacgcct
     1081 ccgcactgcg gcccttcatc gcgaagatgc cctggggccg cttttggatg aagatgacga
     1141 tgaagacgag caccatgatc ttcgcgagca cggcgccctg ccagccttcg agcagcttgt
     1201 tgagcacgcc caggccgagg gccgcgtaca cggtgccggc gagctggccg acgccgccga
     1261 gcacgacgac catgaacgag tcgacgatgt agccctggcc gagatccggc ccgacgttgc
     1321 cgacttgcga gagcgcgcag ccggccagac cggcgagccc ggaaccgagc gcgaacgcat
     1381 aggtgtcgac gcgcgccgtg ttgacgccca tgcaagcggc catcggccgg ttctgcgtca
     1441 cgccgcgaac gaagaggccg aggcgcgtcc ggccgatcac gagcgccacg ccgaccagca
     1501 cgagcgccgc gaaggcgatg atcgcgatgc ggttgaacgg cagcgtcagg ttgctcatca
     1561 gctcaacgcc gcccgagagc cacttcgggt tctcgaccgg cacgttctgc gcgccgaaga
     1621 gcgagcgcac gccctgctgc agcacgaggc tgatgcccca ggtggcgagc agcgtttcga
     1681 gcggccggcc gtagagccag cggatcacgc tgcgctcgag agctgcgccg accagcgccg
     1741 cggccaggaa cgacgccgga atcgccacca gcacataggc gtcgaacgca cccgggaacc
     1801 acgccttgaa ggcgttctgc acgagatagg tcgcataggc gccgatcatc atcagctcgc
     1861 cgtgggccat gttgatcacg cccatcaggc cgtaggtaat cgccaggccc agcgcgacca
     1921 gcagcaggat cgatccgagg ctcaggccgg tgaagacgac acccaggc
//
LOCUS       DASVHM010000427         4009 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_174469, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000427 DASVHM010000000
VERSION     DASVHM010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4009
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174469"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..376)
                     /locus_tag="VF308_08065"
     CDS             complement(<1..376)
                     /locus_tag="VF308_08065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEX7436646.1"
                     /translation="MSGFEHFWSQGDFITRSVAALLLLMSVSAWVVIFWKTWLLRRVR
                     ADLLRAVPAFWAAPSIDAGREQLAAFDREAVLTPLLAAAVAAPPGGTLEARGHADSQL
                     TRRLRDALHGVLQELQFGQVLLA"
     gene            complement(373..1251)
                     /gene="dapB"
                     /locus_tag="VF308_08070"
     CDS             complement(373..1251)
                     /gene="dapB"
                     /locus_tag="VF308_08070"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006297360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEX7436647.1"
                     /translation="MTGAPASTHHTGKRMRVAVAGASGRMGRTLIEAIGASDDLVLSG
                     ALDAPGSPALGLEARTHSTGTRAVRVTCDLRAGLADAQVLIDFTRPEGTLAHAAVCRE
                     LGIKLVIGTTGFSDAQKAEIAGHARHIAIVMAPNMSIGVNVVLKLLDTAARALDAGFD
                     VEIIEAHHRHKIDAPSGTALKMGEVVAKASGRNLKECAVYARDGLSSPDGGERDPRAI
                     GFSSIRGGDIVGDHTVLFAGNGERIEITHRAGSRATYAEGSLRAARFLIGRASGLYGM
                     DEVLGLAADSAKAAAP"
     gene            complement(1248..1796)
                     /locus_tag="VF308_08075"
     CDS             complement(1248..1796)
                     /locus_tag="VF308_08075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HEX7436648.1"
                     /translation="MSASRLSSAAHPLCPLICAVLLAGCQSLQSSDNLLGPITPYRIE
                     IVQGNVITKEQAALVKPGMSRAQVRDVLGSPLLADLFHADRWDYVFTIRRQGAQPQAR
                     AVVALFEGETLKSVETGGELPAERDFVASIDTLKPSRAVPALALTDEQRKVLPTPPRP
                     APAEAVPDVAARTYPPLETTGP"
     gene            1889..2317
                     /gene="fur"
                     /locus_tag="VF308_08080"
     CDS             1889..2317
                     /gene="fur"
                     /locus_tag="VF308_08080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019429672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HEX7436649.1"
                     /translation="MTHAEELKNSGLKATLPRIKVLEVFQKTMQRHMSAEDVFKVLLA
                     EGAEVGLATVYRVLMQFEQAGILSRTHFETGKAVFELNEGKHHDHLVCMDCGRVEEFF
                     DAEIEKRQRSVAQARGFELQDHALALYAACTKKNCVYRMR"
     gene            complement(2325..3281)
                     /gene="hprK"
                     /locus_tag="VF308_08085"
     CDS             complement(2325..3281)
                     /gene="hprK"
                     /locus_tag="VF308_08085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008903894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr(Ser) kinase/phosphatase"
                     /protein_id="HEX7436650.1"
                     /translation="MKPTVISAEALFEEHRPALHWEWIAGHAHPERRFDETAVRAAQS
                     AADLVGYLNYIHPYRVQIVGRREVAYLNAATPDVAERRISRIVTLEPPVLIVADAQVP
                     PDKLVAMCDRADIPLFVTGESAGHVIDVVRGYLGQHFAERTTRHGVFMDILGLGVLLT
                     GESGLGKSELGLELISRGHGLVADDAVDLYRVSQTAIEGRCPELLLNLLEVRGIGLLD
                     IKAIFGETAVRRKMRLKLIVHLVRKETMDREFERLPYEPLNEEILDVPVRKTVIAVDA
                     GRNLAVLVEAAVRNTILQLRGIDTYKEFVERHHKAMQKPEPG"
     gene            complement(3316..3786)
                     /locus_tag="VF308_08090"
     CDS             complement(3316..3786)
                     /locus_tag="VF308_08090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEX7436651.1"
                     /translation="MNRLASILPAVNVLVDVDATSKKRAFEHAGLLFENQHAIARATV
                     TDNLFARERLGSTGLGHGVAIPHGRIKGLKNPLAAVLRVQQPIAFDAPDDEPVGLLIF
                     LLVPEAATQRHLEILSEIAEMLSNRDLRERLKTEGDAAAVHGMIAAWEPLKSVA"
BASE COUNT          619 a         1297 c         1457 g          636 t
ORIGIN      
        1 aggccagcag cacctggccg aactggagct cctgcagcac gccgtgcagc gcgtcgcgca
       61 ggcgccgggt gagctgcgaa tcggcgtggc cgcgcgcctc gagcgtgccg ccggggggcg
      121 cggcgaccgc cgcggcgagg agcggcgtga gcaccgcctc gcgatcgaac gcggcgagct
      181 gctcgcgccc ggcgtcgatc gaaggggcgg cccagaaagc cggcactgcc cgcagcagat
      241 cggcacgcac ccggcgcagc agccaggtct tccagaaaat gacgacccag gcgctgaccg
      301 acatcagcag cagcagcgcg gcgacgctgc gcgtgatgaa gtcgccttgc gaccagaagt
      361 gctcgaagcc gctcatggag cggccgcttt cgcggagtcg gccgcgagcc cgagcacctc
      421 gtccatcccg tacaggccgc tcgcccggcc gatgagaaag cgcgccgcgc gcaggctccc
      481 ttcggcgtag gtggcgcggc tgcccgcgcg gtgggtgatc tcgatgcgct cgccgttgcc
      541 ggcaaagagc acggtgtggt cgccgacgat gtcaccgcca cggatgctgg aaaagccgat
      601 cgcgcgcggg tcgcgctcgc cgccgtcggg cgagctgagg ccgtcgcgcg catagaccgc
      661 gcactccttg aggttgcggc ccgacgcctt ggcgacgacc tcgcccatct tcaacgcggt
      721 gccgctcggc gcatcgatct tgtggcggtg atgggcctcg atgatctcca cgtcgaagcc
      781 agcgtcgagc gcgcgggcgg cggtgtcgag gagcttgagc acgacattga cgccgatgct
      841 catgttgggc gccatgacga tcgcgatgtg cctggcgtgt ccggcgatct cggccttctg
      901 cgcatcgctg aagccggtcg tgccgatcac gagcttgatg ccgagttcgc ggcacaccgc
      961 ggcatgcgcg agcgtgccct cgggccgggt gaaatcgatc agcacttgtg cgtccgccag
     1021 gccggcgcgc aggtcgcagg tcacgcgcac ggcgcgggta ccggtcgaat gggtgcgggc
     1081 ctcgagtccg agggccgggc ttcccggcgc atcgagcgcg cccgagagca ccaggtcgtc
     1141 actcgcgccg atcgcttcga tcagggtacg gcccatgcgt ccggacgcgc cggcaacggc
     1201 cacgcgcatc cgcttcccgg tatggtgcgt gctggccggg gctccggtca tggcccggtg
     1261 gtctcgagcg gcggataggt gcgcgccgcg acgtccggaa cggcttcggc gggtgccggt
     1321 cgcggcgggg tgggcaggac tttgcgctgc tcgtcggtga gggccagcgc gggtacggcg
     1381 cgcgatggtt tcagggtgtc gatcgaggcg acgaaatcgc gttcggcagg cagctcgccc
     1441 ccggtctcga cgctcttcag ggtttcgccc tcgaacagcg ccaccacggc gcgcgcctgg
     1501 ggctgcgcac cctggcggcg gatcgtgaag acgtagtccc aacggtcggc atggaacagg
     1561 tcggcgagga gcggcgagcc gagcacgtcg cgcacctggg cccggctcat gccgggcttg
     1621 acgagcgccg cctgctcttt cgtgatgacg ttgccctgca cgatctcgat gcggtacggc
     1681 gtgatcggcc cgagcaggtt gtcggaagat tgcagcgact gacatccggc gagcagcacg
     1741 gcgcagatca acgggcagag cgggtgggca gcgctggaaa gtcgggaggc actcatgggc
     1801 gtcggtgagg tgcgccaatg gcgcacgcca acctcgatat gatgcggcga ttctagcgtc
     1861 cggcccttcc acggcctgtc cacgccacat gacgcacgcc gaggaactga agaacagcgg
     1921 actcaaggcg acactgccgc gcatcaaggt gctcgaggtg ttccagaaga cgatgcagcg
     1981 tcacatgagc gccgaagacg tgttcaaggt gctgctcgcc gaaggcgcag aggtcggctt
     2041 ggccactgtc taccgcgtgc tcatgcagtt cgagcaagcc ggcatcctgt cgcgcaccca
     2101 tttcgagacc ggcaaggcgg tcttcgagct caacgagggc aagcaccacg accacctggt
     2161 ctgcatggat tgcggccggg tcgaggagtt cttcgacgcc gagatcgaga agcgccagcg
     2221 cagcgtggcg caggcgcgcg gcttcgaact gcaggaccac gcgctcgcgc tctacgcggc
     2281 gtgcacgaag aagaactgcg tctaccgcat gcgctagggc ttgttcaccc cggctcgggc
     2341 ttctgcattg ccttgtggtg gcgttcgacg aattccttgt acgtgtcgat gccgcgcagc
     2401 tgcaggatcg tgttgcgcac tgccgcttcg accagcaccg cgaggttgcg cccggcgtcg
     2461 accgcgatca ccgtcttgcg caccggcacg tcgaggattt cctcattgag cggctcgtac
     2521 ggcaggcgct cgaattcgcg gtccatcgtt tccttgcgca cgagatggac gatgagtttg
     2581 agccgcatct tgcggcgcac tgcggtctcg ccgaagatcg ccttgatgtc gagcaggccg
     2641 atgccgcgca cctcgaggag attgagcaac agctcggggc agcggccctc gatcgcggtc
     2701 tgcgagacgc ggtatagatc gaccgcatcg tcggccacga ggccgtggcc gcgcgagatc
     2761 agttccagcc cgagctcgct tttccccagg cccgattcgc cggtcaggag cacgcccagg
     2821 ccgaggatgt ccatgaacac gccgtggcgt gtcgtgcgct cggcgaagtg ctggcccagg
     2881 tagccgcgca ccacgtcgat cacgtggccg gccgactcgc cggtgacgaa gagcgggatg
     2941 tcggcgcggt cgcacatcgc gaccagtttg tcgggcggca cctgggcgtc ggccacgatc
     3001 agcaccggcg gctcgagcgt gacgatgcgc gagatgcggc gctcggcgac gtcgggcgtg
     3061 gctgcgttca ggtaggccac ttcacggcgg cccacgatct gcacccggta cgggtggatg
     3121 tagttcagat agccgaccag gtctgcggcc gactgcgcgg cgcgcaccgc ggtttcgtcg
     3181 aaacgccgct cggggtgcgc atggcccgcg atccactccc agtgaagtgc cgggcggtgc
     3241 tcttcgaaca gcgcctcggc gctgatgacg gtgggtttca cgagcgggct cgatcgaccg
     3301 cgatgcgccg gacggtcagg ccaccgattt gagcggctcc caggcagcga tcatcccgtg
     3361 caccgcggcg gcgtcgcctt cggtcttcag gcgttcgcgc aaatcccggt tggagagcat
     3421 ctcggcgatt tcagaaagga tctcgaggtg gcgctgggtc gcggcttctg gcaccagcag
     3481 gaagatcagc aggccgaccg gttcgtcgtc gggcgcatcg aacgcaatcg gctgctgcac
     3541 gcgcagcacc gcggcgagcg ggttcttcag gcccttgatg cgcccgtgcg ggatcgcgac
     3601 gccatggccg aggccggtcg agccgaggcg ctcgcgcgcg aacaggttgt cggtgaccgt
     3661 ggcgcgcgcg atggcgtgct ggttttcgaa caggagcccg gcgtgctcga acgcgcgttt
     3721 cttgctggtc gcgtcgacgt cgacgaggac attgacggca ggcaggatgg aggcgagacg
     3781 attcatcgag tcggcagtcg ctgaaagcgg gcttcccgtc gcgaaagtga cgagttgatg
     3841 aattatggag gtgagcgcgg ccgcatggag tgtcccgccg ggtagcgggg tctgattcga
     3901 cggctgttgc tgcgtcgcag caacagccgt cggggccgca agcggccggc ccgggcgccc
     3961 ggcgtcagag ggcggcgtcg agccgcttcg gggcggcgtg gtgctggtc
//
LOCUS       DASVHM010000428         3426 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1257967, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000428 DASVHM010000000
VERSION     DASVHM010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3426
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1257967"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..742)
                     /locus_tag="VF308_08095"
     CDS             complement(<1..742)
                     /locus_tag="VF308_08095"
                     /inference="COORDINATES: protein motif:HMM:NF014634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008887 - glycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0031388 - organic acid phosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEX7436652.1"
                     /translation="MRVADRPVLVAPDKFKGTLTAAEVAAAAARGLARAGVAADICRI
                     ADGGEGTIEALTEGVDHELHAVAAHDALGQAQAGRVALIDGGRTALVEVADAIGLARI
                     APGERDAMAASSRGAGELIAAAAGLGVREVLVGIGGTATTDGGRGAIEALRAARLAGK
                     RGPLAKMPRLTVLCDARASWEQAATVFSPQKGADAATVSRLLRRLDAFADELPRDPRD
                     ALFTGCGGGLAGGLWAAAGAELKSGAGVV"
     gene            948..1658
                     /locus_tag="VF308_08100"
     CDS             948..1658
                     /locus_tag="VF308_08100"
                     /inference="COORDINATES: protein motif:HMM:NF015956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HEX7436653.1"
                     /translation="MAHEATVAEEEYLQTIFWLQEAGLPITGANVARAMQLSPPTVHE
                     MIVRLEKNGYITRRADKSLKFTAEGVAHAEATVRRHRMIERFLTDVLGIPWDDVHEEA
                     ERLEHAMSPLLEERMRAAIGDAKTCPHGHPINPADRIPGVPLADCQVGAKVMILRFEN
                     EAEDLLHYLMAAGLYPGLDAKVMSGDDDGLVLQSKNGEHEVTRSVAETISVTADPSPP
                     PRTALPEQLVLAKERYGR"
     gene            1723..>3426
                     /locus_tag="VF308_08105"
     CDS             1723..>3426
                     /locus_tag="VF308_08105"
                     /inference="COORDINATES: protein motif:HMM:NF028011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate cyclase regulatory domain-containing
                     protein"
                     /protein_id="HEX7436654.1"
                     /translation="MPRPSETIDYAAEGLFDDVETSALDARRRLLDYLLDEECVPLDE
                     VKLAAKERRLMMLPVERALGGEPVYEAAEVAKLADFELELFLNLRRGLGLAEPALDQK
                     AFSEYDVKVMRSVRANLEMGMSLEGIREINRVLASALSQLAATVERQFLTSFLQPGDD
                     EYDIAVRYAEVARITSPEFGFVLQHLFNLHLREATRVDVLGNLATMDLSSDTRELAVC
                     FADLVGFTSLGEQIRADELGSIAERLNEITIDLVQPPVRLIKTIGDAVMLASPESDAL
                     IDTALALIEAVDREEEGFPQLSAGLAVGEVLARGGDVYGPPVNHASRLCDVARPGSLV
                     TTGELHERFEGAYDWTSVGRRRFKGIEQPIEIYRARAKGGREREKAAAKAREQVEQEQ
                     KRAERERERAIAAAEKDSEKAAKEQDKLAKGLERELQKAVEEREKEAAKQLEKAAKEA
                     EPAATPIASAREQIKAVIPTEQLRLPAKAAAEQLRAVMPKKAKADAGPEKPKTKKTTA
                     KAERAAKSKKAATPKSKKPPKEQIKAVKAAIPKLGTKDVQKSADDADKSAKKSKLAKS
                     KA"
BASE COUNT          641 a         1152 c         1164 g          469 t
ORIGIN      
        1 gcaccacgcc ggcgccggac ttcagctcgg cgccggctgc cgcccacaag ccgcccgcca
       61 aaccgccgcc gcaaccggtg aaaagcgcgt cgcgcggatc gcgcggcagc tcatcggcga
      121 aggcgtcgag ccgtcgcagc agcctcgaca cggtcgcggc gtccgctcct ttctgcggcg
      181 agaacacggt cgccgcctgc tcccagctcg cgcgcgcgtc gcagagcacg gtcagtcgcg
      241 gcattttggc cagcggaccg cgtttaccgg cgagccgcgc cgcgcgcagc gcctcgatcg
      301 caccgcgacc gccgtcggtc gtcgccgtgc cgccgatccc cacgagcacc tcgcgcacgc
      361 cgaggccggc tgccgccgcg atcagctcgc cggcgccgcg ggagctcgcg gccatcgcgt
      421 cgcgttcgcc gggcgcgatg cgcgcgaggc cgatcgcatc ggccacctcg accaacgccg
      481 tgcgtccgcc gtcgatcagc gctacgcggc cggcctgcgc ctgtccgaga gcgtcgtgag
      541 cggccacggc gtgcagttcg tgatcgacgc cttcggtgag cgcctcgatc gtgccctcgc
      601 cgccgtcggc gatacgacag atgtcggcgg cgaccccggc gcgcgcgagc ccgcgagccg
      661 ccgccgcagc cacctcggca gccgtgagag tgcccttgaa cttgtccggc gcgaccagca
      721 ccgggcgatc cgcaacacgc atgggcggca gcctaccgcc ggcccacggc gcactccgcc
      781 caagcaacaa accgcgtcac gatgggcttt attgccgcga ggtgaaaccg tgccgcatgc
      841 cgcggggtcg caccttgcgg cgcaattcgc cttactcaag ggatccggcg atcgggaggg
      901 gaccgacggt ctgcgtagcg gccgtgctgg agtaggatca cccgcggatg gcgcacgagg
      961 caacagtcgc cgaggaggag tatctgcaga cgatcttctg gctgcaggag gccggcctgc
     1021 cgatcaccgg cgccaacgtc gcgcgcgcga tgcagctgtc gccgccgacg gtgcacgaga
     1081 tgatcgtcag gctcgagaag aacggctaca tcacgcgccg cgccgacaaa tcgctgaagt
     1141 tcacggccga aggcgtcgcg cacgccgagg cgacggtacg ccggcaccgc atgatcgaac
     1201 gcttcctgac cgacgttttg ggcattccct gggatgacgt gcatgaagag gccgagcgcc
     1261 tcgagcacgc gatgtcgccg ctgctcgaag agcgcatgcg cgcggcgatc ggcgacgcca
     1321 agacctgccc gcacggccac ccgatcaatc cggccgaccg catcccgggc gtaccgctgg
     1381 ccgactgcca ggtcggcgcc aaggtgatga ttctgcgctt cgagaacgag gccgaggatc
     1441 tgctgcacta tctgatggcg gccggccttt accccgggct cgatgccaag gttatgtccg
     1501 gcgacgacga cggattggtc ttgcagtcga aaaacggtga acacgaggta acgcgatcag
     1561 tcgctgagac gatctcggtg accgccgatc cgtcgccgcc gccgcgcacg gcgctgcccg
     1621 agcagctcgt gctcgccaaa gaacgctacg gtcgttgacc gttctggtgg cgataccgcg
     1681 attgaaccgg tcatcgcggc cggccgatag ttttcagcgc tgatgccacg gccgagcgag
     1741 acaatcgact acgcggccga gggccttttc gacgacgtcg agacaagcgc gcttgacgcg
     1801 cgacgccggc tgctcgacta cctgctcgac gaagagtgcg tgccgcttga cgaagtcaag
     1861 ctcgccgcca aagagaggcg gctgatgatg ctgccggtcg agcgcgcgct cggcggcgag
     1921 ccggtctacg aagccgccga ggtcgccaag ctggccgatt ttgagcttga gctgtttctc
     1981 aacctgcgcc gcgggcttgg cctggccgag ccggcgctcg accagaaggc gttcagcgag
     2041 tacgacgtca aggtgatgcg ctcggtgcgc gcaaacctcg agatgggcat gtcgctggag
     2101 ggcatcagag agatcaaccg cgtgctcgcc tccgcgctct cacaactggc ggcaaccgtg
     2161 gagcggcagt tcctgacgtc cttcctgcag cccggcgacg acgagtacga catcgctgtg
     2221 cgctacgccg aggtcgctcg catcacctcg ccggagttcg ggttcgtgct gcagcacctc
     2281 ttcaacctgc acctgcgcga agcgacgcgc gtggacgtgc tcggcaatct ggcgacgatg
     2341 gacctatcct ccgacacccg cgagctggcc gtctgcttcg ccgacctggt cggctttaca
     2401 tccctgggtg agcagattcg cgccgacgag ttgggttcga tcgccgagcg gctgaacgag
     2461 atcacgatcg acctggtcca gccgccggtg cgtttaatca aaacgatcgg cgacgccgtg
     2521 atgctcgcgt cgcccgagtc cgatgcgctg atcgacacgg cactggcgct gatcgaggcg
     2581 gtagaccgcg aggaggaagg gtttcctcag ctgagcgccg gtctggcggt cggcgaggtg
     2641 ctcgcgcgcg gcggcgacgt ctacggaccg cccgtcaacc acgccagccg gctctgcgac
     2701 gttgctcggc cgggttctct ggtgaccacc ggcgagttgc acgagcgctt tgaaggcgca
     2761 tatgactgga cgtcggttgg acgccgtcgc ttcaagggca tcgagcagcc gatcgagatc
     2821 taccgcgcgc gcgcgaaggg cggtcgtgag cgtgagaagg ccgccgccaa ggcccgcgag
     2881 caggtcgaac aagagcagaa gcgcgccgaa cgcgaacgcg agcgagcgat cgccgccgcc
     2941 gagaaggaca gcgagaaggc cgccaaggag caggacaagc tggccaaggg cctggaacgg
     3001 gaacttcaga aagcggtcga ggagcgtgaa aaggaagctg ccaagcagct cgagaaggcc
     3061 gccaaggaag ccgagccggc cgccacgccg atcgcgtccg cgagggagca gatcaaggcg
     3121 gtgattccga ctgagcagct caggctgccc gcgaaggcgg cagccgaaca actcagggcg
     3181 gtgatgccga aaaaggcgaa agccgacgcc gggcccgaga aaccgaagac gaaaaagacg
     3241 accgccaagg cagaaagagc cgctaagtcg aaaaaggccg ccacgccgaa atcgaaaaag
     3301 ccgccgaagg aacagatcaa ggcggtgaag gcagcgatcc cgaagctcgg caccaaagac
     3361 gttcagaagt ctgccgacga tgcggacaaa tcagcaaaga aatcgaagct ggccaagtcg
     3421 aaggcg
//
LOCUS       DASVHM010000429         1867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_247785, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000429 DASVHM010000000
VERSION     DASVHM010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247785"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..828)
                     /locus_tag="VF308_08110"
     CDS             complement(<1..828)
                     /locus_tag="VF308_08110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007733789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX7436655.1"
                     /translation="MNESDQRHLRSSTPQGVGARVRRKEDARLLAGRGQFVGDIKLPN
                     MLEVAFVRSPVAHGRLQAVIKPEGREAQVFTMDDLAGVKPIRAVSGLAGFKPSDQWPL
                     AREKVRQVGEMIAMCVAATRAEAEDIAAQVMVEIDDLPAVVDMLAARSAHPPALVHEH
                     WGDNVFLQTNIRGDIAGVRSRADFVVRRQVRTARQSMAPIEGRGVVCHWDTRLDQLVM
                     HSAAQMPHINRAGLSECLGIDQGRIRVISPDVGGGFGYKGILLPEEICLGWLAMRLQR
                     "
     gene            complement(847..>1867)
                     /locus_tag="VF308_08115"
     CDS             complement(847..>1867)
                     /locus_tag="VF308_08115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007733779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase/deacetylase family
                     metallohydrolase"
                     /protein_id="HEX7436656.1"
                     /translation="GVRSGVTTLIDQGGPSCMTLPAFRAYVTEAKQSRVFAYLSSYLV
                     GGMEGHYYPALYKPDCLDADATVRAALANPDIVKGFKAHAELGGFARWGVEVMRVAAD
                     IGRRANMPLYIHFGQLWPLPEAGSNGVDPDTILEQVVPLLKPGDILAHPFTRHPGGFV
                     DRSGKVHGIVREALAMGLKVDVGHGSHFSYRMARIALDAGITPDTLGADMHGYNTLVP
                     QAAGTPDSHPDKDHMFAGQVRFSLASAMTAMLALGLPIEHVVRMVTCNVVETFGLPRE
                     LGTLAVGNPADVSVLHDESGRWALHDNEGSQIVGDRLLRPAFCLRDGVRHDCDAGILP
                     VAEAA"
BASE COUNT          286 a          645 c          639 g          297 t
ORIGIN      
        1 gcgctgcagc cgcatcgcga gccagccgag gcagatttct tcgggcagca ggattccctt
       61 gtagccgaag cccccgccga cgtcgggcga gatcacgcgg atccggccct ggtcgatgcc
      121 caggcactcc gacagccccg cgcggttgat gtgcggcatc tgcgccgcgc tgtgcatcac
      181 gagttgatcg agccgcgtgt cccagtggca gacgacgccg cggccctcga tcggcgccat
      241 cgactgtcgc gcggtgcgta cctggcggcg cacgacgaag tcggcccggc tccgaacgcc
      301 ggcgatgtcg ccgcggatgt tcgtctgcag gaacacgttg tcgccccaat gctcgtggac
      361 gagggcgggc ggatgcgcgc tgcgtgccgc cagcatgtcg accaccgcgg gcaggtcgtc
      421 gatctcgacc atcacctgcg cagcgatgtc ttccgcctcg gcgcgcgttg cggcgacgca
      481 catcgcgatc atctcgccca cttggcgcac cttctcgcgc gccagcggcc actggtccga
      541 cggcttgaag cccgcgagcc cggagacggc gcggataggt ttgacgccgg ccaggtcgtc
      601 catcgtgaag acctgggctt cacggccctc cggcttgatc accgcctgca gccggccgtg
      661 cgcgaccggc gagcgcacga aggcgacttc gagcatgttc ggcagcttga tgtcgccgac
      721 gaactgtcca cggccggcca gcagacgcgc gtcttccttg cgccgcaccc gcgccccgac
      781 accctgcggg gtggaagacc gaaggtgtct ttgatcgctt tcgttcatcg acatgcactc
      841 ttcagttcac gcggcttcgg ccacgggcag gatgccagcg tcgcaatcgt ggcgcacgcc
      901 gtctcgaagg cagaaggcgg ggcgcagcag acgatcgccg acgatctgcg agccttcgtt
      961 gtcgtgcagg gcccagcggc cgctctcgtc gtgcagcacg ctcacgtccg ccgggttgcc
     1021 gacggccagc gtgccgagct cccggggcag gccgaacgtc tccacgacgt tgcaggtgac
     1081 catgcgcacc acgtgctcga tcggcaggcc cagcgccaac atcgccgtca tcgccgacgc
     1141 cagcgaaaag cgcacctggc cggcgaacat gtgatccttg tcgggatggc tgtctggcgt
     1201 gcctgcggct tgcggtacca gggtgttgta gccgtgcatg tcggcaccca gcgtgtcggg
     1261 cgtgatgccg gcgtccagcg cgatgcgcgc catgcggtag ctgaagtgcg aaccgtggcc
     1321 gacgtccacc ttcaatccca tggccagggc ctcgcgaacg atgccatgca ccttgccgct
     1381 gcgatcgacg aagccgccgg ggtggcgcgt gaaggggtga gccaggatgt cgcccggctt
     1441 gagcaggggc accacctgct cgaggatcgt atcggggtcg acgccgttcg aacccgcctc
     1501 gggcagcggc cagagctggc cgaagtggat gtacagcggc atgttcgcgc gtcgaccgat
     1561 gtcggctgcg acccgcatca cttccacgcc ccagcgcgcg aagccgccca gttcggcgtg
     1621 tgccttgaag cccttgacga tgtcgggatt ggcgagcgcg gccctgaccg tcgcgtcggc
     1681 gtcgaggcag tcgggcttgt acagcgcggg atagtagtgg ccctccatgc cgcccacgag
     1741 gtaggacgac agataggcga agacgcgtga ctgcttggcc tcggtcacgt acgcgcgaaa
     1801 ggccggcagc gtcatgcacg acgggccgcc ctggtcgatc agcgtcgtca cgcccgagcg
     1861 cacgccg
//
LOCUS       DASVHM010000430         1748 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_318074, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000430 DASVHM010000000
VERSION     DASVHM010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318074"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..935
                     /locus_tag="VF308_08120"
     CDS             <1..935
                     /locus_tag="VF308_08120"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013394788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEX7436657.1"
                     /translation="SGSTNAIVHMVALARRSGFDFPIDRYDTLARRTPVLANVRPSGR
                     YLMEDFFYAGGLRALLRQLGDLLDTSQLTVNGHSLGENIAGAEVWNEDVIRSRANPLF
                     ASDGLAVLRGNLAPDGAVIKPPAASPELLVHTGPAVVFEDYNDMAARIDDPALEVTAA
                     SVLVLRNAGPQGAPGMPEWGQLPIPKKLLEHGVRDMVRLSDARMSGTSYGACVLHIAP
                     EARVGGPLALVESGDLIELDVPARKLNVLISAAEMARRRAAWIAPAPKFERGFGALYL
                     RHVSQADKGCDFDFLEPTGAATAGPAGGTEPEIH"
     gene            962..>1748
                     /gene="garL"
                     /locus_tag="VF308_08125"
     CDS             962..>1748
                     /gene="garL"
                     /locus_tag="VF308_08125"
                     /EC_number="4.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006160037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008672 - 2-dehydro-3-deoxyglucarate
                     aldolase activity [Evidence IEA];
                     GO_process: GO:0019394 - glucarate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxyglucarate aldolase"
                     /protein_id="HEX7436658.1"
                     /translation="MNPSPYQALPVNGFRRDLLAGKTLIGCWSSFNSPYTAEILGLAG
                     FDWLLLDGEHAPNDVTTFIPQLMALKDSSSAPVVRPPWNDTVIIKRLLDAGFYNLLVP
                     FIESADEARRAVAATRYPPQGVRGVGTSHRSNRYGTVPGYFECINDNITVLLQIESRA
                     GVAAIDAIAAVEGVDGIFIGPSDLSASLGHLGQPNHPEVQAAISHLFERTRAHGKAVG
                     TLTPNHDDAQRYIDMGMQFVAVGSDQGVFRSATQALRDRFMPKK"
BASE COUNT          281 a          653 c          563 g          251 t
ORIGIN      
        1 tctcgggctc gaccaacgcg atcgtccaca tggtggcgct ggcgcggcgc agcggtttcg
       61 acttcccgat cgaccgctac gacacgctcg cgcggcgcac accggtgctc gccaacgtgc
      121 gcccttccgg ccgctacctg atggaggatt ttttctacgc cggcggcctg cgcgcgctgc
      181 tgcgccagct cggtgacctg ctcgacacgt cccagctcac cgtcaatggg catagcctcg
      241 gcgaaaacat cgccggcgcc gaggtctgga acgaggacgt catccgcagc cgtgcgaacc
      301 cgctcttcgc cagcgacggc ctggcggtgc tgcgcggcaa tctcgcaccg gacggcgccg
      361 tcatcaagcc gccggcggcc tcgcccgaac tgctggtgca caccggaccg gccgtcgtct
      421 tcgaggacta caacgacatg gccgcgcgca tcgacgaccc ggccctcgag gtcaccgccg
      481 cgagcgtcct cgtgttgcgc aacgccggcc cgcaaggcgc ccccggcatg cccgaatggg
      541 gacagctgcc gatcccgaag aagctgctcg agcacggcgt gcgcgacatg gtgcgcctgt
      601 cggacgcgcg catgagcggc acgagctacg gggcgtgcgt gcttcacatc gcgccggagg
      661 cgcgcgtcgg cggcccgctc gccctggtcg aaagcggcga cctgatcgag ctcgacgtgc
      721 ccgcgcgcaa gctcaacgtg ctgatctccg cggccgagat ggcgcgccgc cgcgctgcct
      781 ggatcgcgcc ggcgccgaaa ttcgaacgcg gcttcggcgc cctctatctt cggcatgtga
      841 gccaggccga caagggctgc gatttcgact tcctcgaacc caccggcgcg gcgaccgcgg
      901 ggccggcggg cggcaccgag cccgagatcc actgaacccg ccatcccgcg gagcaacccc
      961 catgaacccg tccccctacc aggcgctgcc ggtcaatggc tttcgccgcg acctgctcgc
     1021 cggcaagacg ctgatcggct gctggtcgag cttcaacagc ccgtacacgg ccgaaatcct
     1081 cggcctggcc ggcttcgact ggctgctgct cgacggcgaa catgcaccga acgacgtcac
     1141 gaccttcatc ccgcaactga tggcgctcaa ggacagctcg agcgcgccgg tggtgcggcc
     1201 gccctggaac gacacggtga tcatcaagcg cctgctcgac gccggcttct acaacctgct
     1261 cgtgccgttc atcgaatcgg ccgacgaagc gcgccgcgcg gtcgccgcga cgcgctatcc
     1321 gccgcaaggc gtgcgcgggg tcggcacctc gcaccgcagc aaccgctacg gcaccgtgcc
     1381 gggctacttc gagtgcatca acgacaacat cacggtgctg ctgcagatcg aaagccgggc
     1441 cggcgtcgcg gcgatcgacg cgatcgccgc ggtagaaggc gtcgacggca tcttcatcgg
     1501 cccgtcggac ctgtcggctt cgctcggcca cctcggccag ccgaatcacc ccgaggtcca
     1561 ggccgcgatc agccaccttt tcgagcgcac gcgcgctcac ggcaaggcgg tcggcacgct
     1621 gaccccgaac cacgacgacg cgcagcgcta catcgacatg ggcatgcagt tcgtcgccgt
     1681 cggttccgac cagggcgtgt tccgcagcgc gacgcaggca ttgcgcgacc ggttcatgcc
     1741 gaagaaga
//
LOCUS       DASVHM010000431         4579 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1258201, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000431 DASVHM010000000
VERSION     DASVHM010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4579
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1258201"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..268
                     /locus_tag="VF308_08130"
     CDS             <1..268
                     /locus_tag="VF308_08130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006461646.1"
                     /note="catalyzes the conversion of ferulic acid to
                     feruloyl-CoA; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="feruloyl-CoA synthase"
                     /protein_id="HEX7436659.1"
                     /translation="PADATPAAVLEAPPVHEFFQRLVDDLWHSGTGSATRVARAMVLL
                     DPPSIDLGEVTDKGSINQRAVLTHRVATVERLFAGAAGVILPRR"
     gene            303..1067
                     /locus_tag="VF308_08135"
     CDS             303..1067
                     /locus_tag="VF308_08135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010466903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7436660.1"
                     /translation="MNIQGQAALVTGGASGLGAQTARELARRGAKVAVLDRNGDGAKA
                     VAAEFGGIGVACDITSTESVVAALAAARATHGPARLVMNIAGIGTAKRLIGRDGTPMP
                     IEDFRRVIEVNLVGTFNVIRLATAEIVKLDPLEDGERGVIVCTASVAAFDGQVGQEAY
                     AASKGGLVALTLPLARDLAQFGVRVVTIAPGLFLTPLMAELPQPVQESLAASIPFPKR
                     LGKPEEFAHLAASIIENMSLNGEVIRLDGALRMAPR"
     gene            1118..1549
                     /locus_tag="VF308_08140"
     CDS             1118..1549
                     /locus_tag="VF308_08140"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019577532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEX7436661.1"
                     /translation="MPRTTTHRVRVEFGDCDPAGIVFFPNFSRWMDAASASFFMQCGV
                     PPWHQLVKTHGIVGTPLLEINTRFTKSATYGEVLLVSTHIEVWRAKTFTHFHRVIRPR
                     DGGEDLICEGHEVRAFVRRDVDDPDRLRAMPIPEDIKALCQ"
     gene            1615..2745
                     /locus_tag="VF308_08145"
     CDS             1615..2745
                     /locus_tag="VF308_08145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436662.1"
                     /translation="MNRLTPVAAALAVLFATAAQADVNIGISLPLTGPASGLGIPMKN
                     FFALWPQTIAGEKVNLIILDDATDPTKGVVNAKRFVTEDKVDIIGGSAATPVAAAMAE
                     VAADSQTVQIAFSPVALPPGKDAWTFRLPQSTTVMAHAMVEHMKKNGVKTVGFLGYTD
                     AYGESWLKDFTTVAQPAGIKVVAAERFARSDTGVTAQALKLSAANPDAILIVASGSGA
                     AMPELGVLERGYKGKIYQTHAAASPDLMRIGGKAVDGTYVVSGPAVIAEQLPESHPSK
                     KLAIDFVQKYEKAQGAGQRNQFAGHAYDMLVTMEKVLPVALKKAKPGTKEFRAAIKDA
                     METMGRTIFSHGVMNWTKDDHWGFTNETGVMLKVVNGEWKVE"
     gene            2806..3855
                     /locus_tag="VF308_08150"
     CDS             2806..3855
                     /locus_tag="VF308_08150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011517936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436663.1"
                     /translation="MFNLDLVTAGILMLDGATNGAVYALLALATVLVFAVTRVIFIPQ
                     GEFVAYGALTLALLQLGKVPGTVWLLLAVTLVATAQDAFAAARRGLPARALGLRALKE
                     LLFPLLVVAVTLWAAPRKFPLVFQSLLTLAIVTPLGPLVYRLAYEKLADATVLVLLIV
                     SVGVHFALTGLGLVFFGAEGFRNPSFWDARFSAGALSLTGQTLIIFMVSAALIVGLFL
                     FFERTLRGKALRATAVNRLGARLMGISTSGAGRLSFGLAAFIGALSGLLIGPTTTMFY
                     DSGFLIGLKGFVAAIFGGLASYPAAALGAVFVGLLESFGSFWASAFKEVIVFTVIIPV
                     LLWRSFQHGHADEDE"
     gene            3855..>4579
                     /locus_tag="VF308_08155"
     CDS             3855..>4579
                     /locus_tag="VF308_08155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011517935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7436664.1"
                     /translation="MSALAMRRYVFIAFTVLLALMPQLPVPEFWITQANYIGLYALVV
                     IGLVLLTGVAGLTSFGQAAFVGLGAYSAAYLTVTHGVSPWFTVWIGLVVTGLAALVLG
                     WITLRMSGHYLPLATIAWGLSLYYLLGNIDALGKYDGLLGIPALKFFGIQLNTGRSFF
                     YLLWALVLLAAVGVTHLLDSRAGRALRAVKGGTTMAEAMGVDTFRTKVTAFVLAALLA
                     SVSGWLFAHFQRTVNPSPFGLNMG"
BASE COUNT          664 a         1635 c         1498 g          782 t
ORIGIN      
        1 gccggccgat gccacgcccg ccgcggtgct cgaggcgccg ccggtgcacg aattcttcca
       61 gcgcctcgtc gacgatctct ggcacagcgg caccggcagc gcgacccgcg tggcgcgcgc
      121 gatggtcctc ctggatccgc cgagcatcga tctcggcgag gtcaccgaca agggctcgat
      181 caaccagcgc gcggtgctga cgcatcgcgt cgccacggtc gagcggctct tcgccggcgc
      241 tgccggcgtc atcctgccgc gccgctgaac gcggcggcgc agcttcagca caaggccaca
      301 acatgaacat ccaagggcaa gccgcactcg tcaccggcgg cgcatcgggg ctcggcgcgc
      361 agaccgcgcg cgaactggcg cggcgcggcg cgaaggtcgc ggtgctcgac cgcaacggcg
      421 acggcgccaa ggcggtcgcg gccgagttcg gcggcatcgg cgtcgcctgc gacatcacct
      481 cgaccgagag cgtcgtcgcc gcgctggccg cggcccgcgc cacgcacggc ccggcgcgcc
      541 tggtgatgaa catcgccggc atcggcaccg ccaagcgcct catcggccgc gacggcacgc
      601 cgatgccgat cgaggatttc aggcgcgtga tcgaggtcaa cctcgtcggc accttcaatg
      661 tcatccgcct cgccaccgcc gagatcgtca agctcgaccc gctcgaagac ggtgagcgcg
      721 gcgtgatcgt ctgcaccgcg tcggtcgcgg cgttcgacgg ccaggtcggg caggaggcgt
      781 atgccgcctc gaagggcggg ctcgtcgcgc tgaccctgcc gctggcgcgc gacctggcgc
      841 agttcggggt gcgcgtcgtg accatcgccc ccgggctctt cctgacgccg ctgatggccg
      901 agcttccgca gccggtgcag gagtcgctcg ccgcgagcat tccgttcccc aagcgcctgg
      961 gcaaacccga agagttcgcg cacctcgcgg ccagcatcat cgagaacatg tcgctcaacg
     1021 gcgaagtgat ccggctcgac ggcgcgctgc gcatggcgcc gcgctgatgc gcgcgggcgc
     1081 cgaccgtgat cgcctccgaa tgcttccaag accagccatg ccccgcacca cgacccaccg
     1141 cgtgagggtt gaattcggcg actgcgaccc ggcgggcatc gtcttcttcc cgaacttctc
     1201 gcgctggatg gatgcggcgt cggcgtcgtt cttcatgcag tgcggggtgc ccccgtggca
     1261 ccaattggtg aagacgcacg gcatcgtcgg cacgccgctg ctcgagatca acacccgctt
     1321 cacgaagtcg gccacctacg gcgaagtgct cctcgtttcg acccacatcg aggtgtggcg
     1381 cgccaagacg ttcacgcact tccaccgggt gattcgtccg cgcgatggcg gcgaagacct
     1441 gatttgcgaa ggccacgaag tgcgtgcctt cgtgcgccgc gatgtcgacg acccggaccg
     1501 cctgcgcgcg atgccgattc ccgaagacat caaggcgctc tgccaatagt gcgcggccgt
     1561 tcacgacccc gcgaagtcat ctgccctttc ttcttgttcc aggagaccgt caccatgaat
     1621 cgactcacac ccgttgccgc ggcgctcgcc gtgctgttcg cgaccgccgc gcaggccgat
     1681 gtcaacatcg gcatcagcct gccgctcacg ggccccgcgt cgggcctcgg cattccgatg
     1741 aagaacttct tcgcgctctg gccgcagacg atcgccggcg agaaggtcaa cctgatcatc
     1801 ctcgacgacg ccaccgaccc gaccaagggc gtcgtcaatg cgaagcgctt cgtcaccgaa
     1861 gacaaggtcg acatcatcgg cggctcggcc gcgacgccgg tcgccgccgc gatggccgag
     1921 gtcgccgccg attcgcaaac cgtgcagatc gcgttctcgc cggtggcgct gccgcccggc
     1981 aaggacgcct ggaccttccg gctgccgcag tcgaccacgg tgatggccca tgcgatggtc
     2041 gagcacatga agaagaacgg cgtcaagacc gtcggcttcc tcggctatac cgatgcctac
     2101 ggcgagagct ggctcaagga cttcaccacg gtcgcgcaac cggccggcat caaggtcgtc
     2161 gcggccgagc gcttcgcgcg ctcggacacc ggcgtgaccg cacaggcgct caagctgagc
     2221 gcggccaacc ccgatgcaat cctgatcgtc gcttccggca gcggcgccgc gatgcccgaa
     2281 ctcggcgtcc tcgagcgcgg ctacaagggc aagatctacc agacccacgc cgcggccagc
     2341 cccgacctga tgcgaatcgg cggcaaggcg gtcgacggca cctacgtcgt ctccggcccg
     2401 gcggtgatcg ccgagcagct ccccgagagc cacccctcga agaagctcgc gatcgacttc
     2461 gtgcagaagt acgagaaggc gcagggcgcc ggccagcgca accagttcgc cggccacgcc
     2521 tacgacatgc tcgtgacgat ggaaaaggtg ctcccggtcg cgctgaagaa ggccaagccc
     2581 ggcaccaagg aattccgcgc cgcgatcaag gacgcgatgg agacgatggg ccgcacgatc
     2641 ttctcgcacg gcgtgatgaa ctggaccaag gacgatcact ggggtttcac gaacgagacc
     2701 ggcgtgatgc tcaaggtcgt caacggcgag tggaaggtcg agtgacgcgg tccgcgggcg
     2761 ggcgatagtt cttcgtgatc cacgccgcgc tcccgaagcc gaccgatgtt caacctcgat
     2821 ctcgtcaccg ccggcatcct gatgctcgac ggcgccacca acggcgccgt ctacgccttg
     2881 ctggcgctgg cgaccgtgct ggtgttcgcg gtgacgcggg tcatcttcat tccgcagggc
     2941 gagttcgtcg cctatggcgc gcttacgctc gcgctgctgc aactcggcaa ggtgccgggc
     3001 acggtctggc tgctcctcgc ggtcacgctc gtcgccacgg cgcaggacgc tttcgccgcg
     3061 gcgcggcgcg gcctgccggc gcgcgcgctc gggctgcgcg cgctcaagga attgcttttt
     3121 cccctgctcg tggtggcggt caccctctgg gccgcgccgc gcaagttccc gctcgtcttc
     3181 cagagcctgc tgacgctcgc gatcgtcacc ccgctcggac cgctcgtcta ccgactcgcc
     3241 tacgagaagc tcgccgacgc gaccgtgctc gtcctcctga tcgtctcggt gggcgtgcac
     3301 ttcgccctca ccggcctggg cctggtcttc tttggcgccg agggctttcg caatccgagc
     3361 ttctgggatg cgcgcttttc ggccggtgcg ctctcgctca ccggccagac gctgatcatc
     3421 ttcatggtct cggcggcgct gatcgtgggc ctcttcctct tcttcgagcg cacgctgcgc
     3481 ggcaaggcgc tgcgtgcgac cgcggtgaac cggctcggtg cccggctgat gggcatctcg
     3541 acgtcgggcg ccgggcgcct gagcttcggc ctcgccgcgt tcatcggcgc gctttcgggc
     3601 ctgctgatcg ggccgacgac gacgatgttc tacgactcgg gctttctgat cggcctgaag
     3661 ggcttcgtcg cggcgatctt cggcgggctc gcgagctacc cggccgccgc gctcggcgcg
     3721 gtcttcgtcg gcctgctcga gagcttcggt tcgttctggg ccagtgcgtt caaggaggtg
     3781 atcgttttca cggtgatcat tccggtcttg ctgtggcgct cgttccagca cggtcacgcc
     3841 gacgaggacg aatgatgtct gccctcgcga tgcgccgcta cgtcttcatc gccttcacgg
     3901 tgctgctggc gctgatgccg cagctgccgg tgcccgagtt ctggatcacc caggccaact
     3961 acatcggcct ttacgcgctg gtcgtgatcg gcctggtgct gctgaccggc gtggccgggc
     4021 tcacgtcgtt cgggcaagcc gctttcgtcg gtctgggcgc gtacagcgcc gcgtacctga
     4081 cggtcacgca cggtgtctcg ccctggttca cggtctggat cggcctcgtc gtcaccggcc
     4141 tcgcggccct cgtgctcggc tggatcacgc tgcgcatgtc gggccactac ctgccgctcg
     4201 caacgatcgc gtggggcctg tcgctctact acctgctcgg caacatcgac gcgctcggca
     4261 agtacgacgg cctgctcggc attccggcgc tgaagttctt cggcatccag ctcaacaccg
     4321 ggcgcagctt cttctacttg ctgtgggcgc tggtgttgct cgccgcggtc ggggtgacgc
     4381 acctcctcga ttcgcgcgcc gggcgcgccc tgcgcgcggt caagggcggc acgacgatgg
     4441 ccgaggcgat gggcgtcgac acgtttcgca ccaaggtcac cgccttcgtg ctcgcggcgc
     4501 tgctcgcgag cgtgtcgggc tggctcttcg cgcacttcca gcgcaccgtg aatccatcgc
     4561 cgttcggcct caacatggg
//
LOCUS       DASVHM010000432         5727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_970852, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000432 DASVHM010000000
VERSION     DASVHM010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5727
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_970852"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..236)
                     /locus_tag="VF308_08160"
     CDS             complement(<1..236)
                     /locus_tag="VF308_08160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436665.1"
                     /translation="MAKANSPVPTKAPTSDSVGMSYLETPSRKFVTIYLPLIVFLIVL
                     LFPFYWMGITSVKPDNELLSRTGNPFWVIAPTLA"
     gene            complement(245..1147)
                     /locus_tag="VF308_08165"
     CDS             complement(245..1147)
                     /locus_tag="VF308_08165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017453013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEX7436666.1"
                     /translation="MIERLQNNRNALGLLFMLPAALLLIVFLTYPLGLGFWLGFTDAK
                     VGRTGQWIGLENYEFLWNDAVTRLALFNTLFYTFVASVIKFGLGLWLALLLNRNIRFK
                     TFFRAVILLPYIVPTALSAIAFWWIYDSQFSIISWMLVKMGLIDTYIDFLGQPWHARF
                     AVIAANVWRGVPFVAITLLAGLQTISPSYYEASAIDGATRWQQFRHVTLPLLTPIIAV
                     VMTFSVLFTFTDFQLIYVITRGGPLNATHLMATLSFQRAISGGALGEGAAISIAMVPF
                     LLAAIMFSYFGLQRRAWQQGGQDK"
     gene            complement(1179..2507)
                     /locus_tag="VF308_08170"
     CDS             complement(1179..2507)
                     /locus_tag="VF308_08170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013543743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEX7436667.1"
                     /translation="MNEFNRRKFLEGSAGVAAAATLGTGSALFAPLAQAQALTFKPEK
                     GAKLRVLRWSRFVQGDIDAYMVNVKKFIDKTGIEVRVDNEGWEDVRPKAAVAANTGAG
                     PDIILSTNDDANLYPDKLLDVTDLAEYLGKKYGGWYAAGQAFNRPDGKKWIALPLGAA
                     GSMMVYRESMLKTAGFDTFPKDTDNFLKMFKALKEKGTPGGMALGNATGDGMWCNWLI
                     WAFGGKLVDQNNKVVIDSPETLKALDYGKELYATFIPGTLSWLDPNNNKAFLDSQISV
                     TNNGISIYYAAKNSTDPKVHDLAADINHASFPVGPVGVPTESHLFFNQMIMKYTKYPQ
                     AAKEFLRFMMEKEQFDPWLTGAQAYVATPLAGYASTAIWTSDPKNTPYRDPVKNMRPA
                     GYAGKLGYASAGAAADFIVINMVAEAISGSKTPKEAMERAQKRAERYYRV"
     gene            complement(2558..3628)
                     /gene="ugpC"
                     /locus_tag="VF308_08175"
     CDS             complement(2558..3628)
                     /gene="ugpC"
                     /locus_tag="VF308_08175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013543742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HEX7436668.1"
                     /translation="MASVTIRSVRKKFGETAILHGVDIDIADGSFTVLVGPSGCGKST
                     LLRMIAGLEEITAGEIRIGERRVNDLPPKERDIAMVFQNYALYPHMTVGKNMAFALML
                     AKEDKATIDRKVGRAAEILALTPLLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEP
                     LSNLDAKLRVAMRSEIKELHLRLKTTSVYVTHDQIEAMTMGDKIVVMRDGRIEQTDSP
                     LELYDHPANLFVAGFIGSPAMNFLPGTLRRNAGAGRVELADGTRLDAPANAGGADGQA
                     VIMGMRPEHLTLAATGISSKVVVVEPTGADTFVACRHEGAEFSVVFRERHDFAPGTTI
                     HLQPDLQRAHLFDASSGERLAA"
     gene            3776..4555
                     /locus_tag="VF308_08180"
     CDS             3776..4555
                     /locus_tag="VF308_08180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013543741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HEX7436669.1"
                     /translation="MLTRPSPTQAAPPRLVIERLSDRLAALLSAQVESGSLAPGERLP
                     TEQQLALSHGISRTVVREAVHQLKSRGLLVSRQGSGVYVSKAPRNHALSFDAAALESI
                     EAVVQVREVRRALEGETAALAATRASRLQVAALRRALRAIDKSTAEGGDGVAEDLAFH
                     RALTEACGNPHFGRLLEFLEQYLAEAMRVTRGNEAQRLDFMEQVRAEHRAIVEAIAAR
                     QPHLARRRAVEHMRRGDRRLQITGLIPAPEAARKSASRKPT"
     gene            4552..5586
                     /gene="denD"
                     /locus_tag="VF308_08185"
     CDS             4552..5586
                     /gene="denD"
                     /locus_tag="VF308_08185"
                     /EC_number="1.1.1.410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019430642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-erythronate dehydrogenase"
                     /protein_id="HEX7436670.1"
                     /translation="MKLLITGGGGFVGSRLARALLAQGRLGGQTIEHLVLTDQVAPAA
                     DLGADRRVETRVSPLLDQCAGLAREPFDGIFHLASAVSGECEADFDLGLRSNLDTTRA
                     LLDALRAGVQAGAKPARLVFSSSVAVFGPDPSMLLPARVGDTTLPAPQTSYGTHKLIC
                     EYLIADYTRKGFVDGRAARLMTVTVRPGRPNRAASSFFSGIVREPLAGLEAICPVDPQ
                     TSHPLTSPARTIEGLIAVFEASREAFGGRLALNLPAVNVRVSDMLDALEAVAGRAVRE
                     RVRFVPDPTIAAIVANWPGGASAERATRLGLRPDTDFADIIRQYIADCAAAPGGAEAL
                     KGLPRTGAMR"
     gene            5583..>5727
                     /locus_tag="VF308_08190"
     CDS             5583..>5727
                     /locus_tag="VF308_08190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7436671.1"
                     /translation="MNRIDLAGRVAVVTGGAQGIGYAIAERMLASGARVVIWDIDEAR
                     LGAA"
BASE COUNT          916 a         1902 c         1954 g          955 t
ORIGIN      
        1 tgggcgagcg tcggcgcgat cacccagaac gggttgccgg tgcgcgagag cagctcgttg
       61 tcgggcttca ccgacgtgat ccccatccag tagaacggga acaggaggac gatcaggaag
      121 acgatcagcg gcaggtagat cgtcacgaac ttgcgcgacg gcgtctcgag gtagctcatg
      181 ccgacgctgt cgctcgtcgg cgccttcgtc ggcaccggcg agttcgcttt cgccatggcg
      241 tcgctcactt gtcctgcccg ccctgctgcc aggcgcgccg ctgcagcccg aagtagctga
      301 acatgatcgc cgcgagcagg aacggcacca tcgcgatcga gatcgccgcg ccttcgccga
      361 gggcgccgcc cgagatcgcg cgctggaacg agagcgtcgc catcaggtgg gtcgcgttga
      421 gcgggccgcc gcgggtgatg acgtagatca gctggaagtc ggtgaaggtg aagagcaccg
      481 agaaggtcat gacgacggcg atgatcggcg tcagcagcgg cagcgtgacg tggcggaact
      541 gctgccagcg cgtcgcgccg tcgatcgccg aggcttcgta gtacgacggc gagattgtct
      601 gcaggccggc gagcagcgtg atcgcaacga acggaacgcc gcgccagacg ttggcggcga
      661 tcacggcgaa gcgcgcgtgc cacggctggc cgaggaaatc gatgtaggta tcgatcaggc
      721 ccatcttcac cagcatccag ctgatgatcg agaactggga gtcgtagatc caccagaagg
      781 cgatcgccga gagcgccgtc ggcacgatgt agggcagcag gatgacggcg cgaaagaagg
      841 tcttgaagcg gatgttgcgg ttcaggagca gggccagcca gaggccgagc ccgaacttga
      901 tgacgctcgc cacgaacgtg tagaagagcg tgttgaacag ggccaggcgc gtgaccgcgt
      961 cgttccagag gaactcgtag ttctccaggc cgatccactg gcctgtgcgg ccgaccttgg
     1021 cgtcggtgaa gccgagccag aagccgaggc cgagcggata ggtcaggaag acgatcaaca
     1081 gcaacgccgc gggcagcatg aacagcagcc cgagcgcgtt gcggttgttc tgcagcctct
     1141 cgatcaacga catgcgagag gcaccgccgg cggcgaggtc agacgcggta atagcgctcc
     1201 gcccgcttct gtgcccgctc catcgcttcc ttcggcgtct tcgagccgct gatcgcctcg
     1261 gcgaccatgt tgatgacgat gaagtcggcc gccgcacccg ccgaggcata gcccagcttg
     1321 ccggcgtagc ccgccgggcg catgttcttg accgggtcgc ggtacggcgt gttcttcgga
     1381 tccgacgtcc agatcgccgt cgacgcgtag cccgcgagcg gcgtggccac gtaggcctgg
     1441 gcgccggtca gccagggatc gaactgctcc ttttccatca tgaagcgcag gaattccttc
     1501 gccgcctgcg ggtacttggt gtacttcatg atcatctggt tgaagaacag gtgcgactcg
     1561 gtcggcacgc ccaccgggcc gaccgggaac gaggcgtggt tgatgtccgc ggccaggtca
     1621 tggaccttcg gatcggtcga attcttcgcc gcgtagtaga tcgagatgcc attgttggtg
     1681 acgctgatct ggctgtcgag gaaggccttg ttgttgttcg ggtcgagcca cgacagcgtc
     1741 cccgggatga aggtcgcgta cagctccttg ccgtagtcga gcgccttcag cgtctcgggg
     1801 ctgtcgatca cgaccttgtt gttctgatcg acgagcttgc cgccgaaggc ccagatcagc
     1861 cagttgcacc acatgccgtc gccggtcgcg ttgccgagcg ccatgccgcc cggtgtgccc
     1921 ttctccttca acgccttgaa catcttcagg aagttgtcgg tgtccttcgg gaaggtgtcg
     1981 aagccggccg ttttgagcat gctttcgcgg tagaccatca tcgagcccgc ggcgccgagc
     2041 ggcagcgcga tccacttctt gccgtcgggc cggttgaagg cctggccggc cgcgtaccag
     2101 ccgccgtact tcttgcccag gtactcggcc aggtcggtga cgtcgagcag cttgtcggga
     2161 tagaggttcg catcgtcgtt ggtcgacagg atgatgtcgg ggccggcgcc cgtgttggcg
     2221 gccacggcgg ccttcgggcg cacatcctcc cagccttcgt tgtcgacccg gacttcgatg
     2281 ccggtcttgt cgatgaactt cttgacgttg accatgtagg cgtcgatgtc gccctgcacg
     2341 aaacggctcc agcgcagcac gcgcagcttg gcccccttct cgggcttgaa cgtcaaggct
     2401 tgcgcctggg cgagcggcgc gaaaagcgcg ctgccggtgc cgagcgtggc cgcggcggcg
     2461 acgccggccg agccttccag aaacttgcgg cgattgaatt cgttcatcgg ggtctccttg
     2521 tgttttcggg acgtggcagc tggggaagtc gcgcgggtca cgcggcgagg cgctcgccgg
     2581 agctcgcatc gaagagatgg gcgcgctgca gatcgggctg caggtggatc gtggtgccgg
     2641 gcgcgaaatc gtggcgttct cggaacacga ccgaaaactc ggcgccttcg tggcggcacg
     2701 cgacgaaggt atcggcaccg gtgggctcga ccacgacgac cttcgacgaa atgcccgtcg
     2761 cggccagggt gaggtgctcg gggcgcatgc ccatgatcac cgcttggcca tcggcgccgc
     2821 cggcattcgc gggggcatcg agccgggtgc cgtcggcgag ttcgacccgc cctgcgccgg
     2881 cgttgcggcg caaggtgccg ggcaggaagt tcatcgccgg cgagccgatg aatccggcca
     2941 cgaacaggtt ggccggatgg tcgtagagct cgagcggact gtcggtctgc tcgatgcgcc
     3001 catcgcgcat tacgacgatc ttgtcgccca tcgtcatcgc ctcgatctgg tcgtgcgtga
     3061 cgtagaccga ggtcgtcttg aggcgcaggt gcagctcctt gatctcgctg cgcatcgcga
     3121 cgcgcagctt cgcgtcgagg ttggagagcg gctcgtcgaa caggaacacc tgcgggtcgc
     3181 gcacgatcgc acggcccatc gccacgcgct ggcgctgccc gcccgagagc tggcgcggat
     3241 agcgctcgag cagcggcgtg agcgcgagga tctcggcggc gcggccgacc ttgcggtcta
     3301 tcgtcgcctt gtcttccttg gccagcatca gagcgaacgc catgttcttg ccgacagtca
     3361 tatgcggata gagcgcgtag ttctggaaca ccatcgcgat gtcgcgttcc ttcggcggca
     3421 ggtcgttgac cctgcgctcg ccgatgcgga tttcgccggc agtgatttcc tcgagacccg
     3481 cgatcatgcg cagcaacgtg gacttgccgc agcccgaggg gccgaccagc acggtgaagg
     3541 aaccatcggc gatgtcgatg tcaacgccgt gcaggatcgc cgtctcgccg aatttcttcc
     3601 tgaccgaccg gatcgtgacg ctagccatgc tgcttgaaaa gtgagtcgac atcgcgcgcg
     3661 gcgcctgtcg ccgcaaccgc aatgtcgcgg cagtatcggc attgcaggac ccgagcgcca
     3721 tagggcaaac cgttagacgg cttggggaac caatttgtat gatgacccga ccaccatgct
     3781 cacccggccc tcccccaccc aggccgcccc gccccgcctg gtcatcgagc ggctctccga
     3841 ccggctcgcc gcgctgctgt cggcacaggt cgaatccgga tcgctcgcgc ccggcgagcg
     3901 gctgccgacc gagcagcaac tcgcgctttc ccacggaatc tccagaacgg tggtccgcga
     3961 agccgtgcac cagctcaagt cgcgcggcct gctggtgtcg cgccagggct cgggtgtcta
     4021 cgtgtcgaag gccccgcgca accatgcgct cagcttcgat gccgccgcgc tcgaatcgat
     4081 cgaggcggtg gtccaggtcc gcgaagtgcg gcgcgcgctc gaaggcgaaa ccgccgcgct
     4141 cgccgcgacc cgcgcctcgc gcttgcaggt cgccgcgctg cggcgcgcgc tgcgcgcgat
     4201 cgacaagagc accgccgagg gcggcgacgg cgtcgccgaa gacctcgcct tccaccgcgc
     4261 cctgaccgaa gcctgcggca atccgcactt cgggcgcctg ctcgagtttc tcgaacaata
     4321 tctggccgag gcgatgcgcg tgacgcgcgg caacgaagcc cagcgcctcg atttcatgga
     4381 gcaggtgcgg gctgagcacc gcgccatcgt cgaggcgatc gcggcgcgcc agccgcacct
     4441 ggcgcggcgc cgcgccgtcg aacacatgcg ccgcggcgat cgccggctgc agatcacggg
     4501 cttgatcccg gcgcccgagg cggcgcgcaa atcagcatcg aggaaaccga catgaaattg
     4561 ttgatcaccg gcggcggcgg cttcgtcggc tcgcgtctgg cccgcgccct gctggcgcaa
     4621 ggtcgactcg gcggccagac gatcgagcac ttggtgctga cggatcaggt ggcgccggcc
     4681 gccgatctcg gcgccgaccg gcgcgtcgaa acccgggtca gcccgcttct cgatcaatgc
     4741 gcggggctcg cgcgcgagcc cttcgacggc atcttccatc tcgcctccgc ggtctcgggc
     4801 gaatgcgagg ccgacttcga tctcggcctg cgctcgaacc tcgacaccac gcgcgccctg
     4861 ctcgatgcgc tgcgtgcggg cgtacaggcc ggtgcgaagc cggcgcgcct cgtgttctcg
     4921 agttcggtcg ccgtgttcgg gcccgaccct tcgatgcttt tgccggcccg cgtcggcgac
     4981 acgacgctgc cggcgccgca gacctcctac ggcacccaca agctgatctg cgagtacctg
     5041 atcgccgact acacgcgcaa gggctttgtc gacgggcgtg cagcgcgcct gatgacggtc
     5101 accgtgcgcc ccggacggcc gaatcgcgcg gcctcgtcgt tcttctccgg catcgtccgc
     5161 gagccgctgg cgggactcga ggcgatctgc ccggtggacc cgcaaacctc gcatccgctg
     5221 acctcgccgg cgcgcacgat cgaaggcctg atcgccgtct tcgaagcgag ccgagaagcg
     5281 ttcggcggtc gcctcgcgct gaacctgccg gccgtcaatg tgcgggtctc ggacatgctc
     5341 gatgcgctcg aggccgtggc cgggcgagcg gtgcgcgagc gcgtgcgctt cgtgcccgac
     5401 ccgaccatcg ccgctatcgt cgccaactgg ccgggcggcg ccagcgccga gcgcgcgacg
     5461 cgccttggcc tcagacccga caccgacttc gccgacatca tccgccagta catcgcggac
     5521 tgcgcggccg cgccaggcgg cgcagaagcg ctgaaagggc tgccccggac aggagcgatg
     5581 cgatgaaccg catcgatctc gcgggaagag tcgccgtcgt caccggcggc gcccaaggca
     5641 tcggctacgc gatcgcggaa cgcatgctcg cgtcgggcgc tcgggtcgtg atctgggaca
     5701 tcgacgaggc ccgcctcggc gcggccc
//
LOCUS       DASVHM010000433         4319 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_104240, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000433 DASVHM010000000
VERSION     DASVHM010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4319
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104240"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..1326)
                     /locus_tag="VF308_08195"
     CDS             complement(70..1326)
                     /locus_tag="VF308_08195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013539751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HEX7436672.1"
                     /translation="MNWPYELQIGWRYTRVGRAGRRNRFISFISGVSVLGIALGVAAL
                     IIVLSVMNGFQKEVQNRMLSVIAHIEVLDPQGAALADWQATAAAARRNPEVIGAAPFI
                     AAQALIARGDEMRGAVVRGISPNDEATVTDLAAQLKDTTLTRLVPGGWGIVLGIELAR
                     SLEVRPGDKVTLVAPGGQVTPAGVVPRLKQFTVVGTFDAGHYEYDSGLAWIHVDDAAR
                     LFRVEGPTGVQLRLKDLQRAREVSAELAQSLGPGVTVRDWTRTNRNWFAAVQVEKRLM
                     FIILTLIVAVAAFNLVSTLVMTVTDKRADIAILRTLGASPGSVMSIFMVQGALSGIIG
                     TFAGVALGLLVAFNVDVIVPFIERLLQVSFLPSSVYLISRMPSDPQSGDIVPIVVISL
                     VLSFLATLYPSWRASRVQPAEALRYE"
     gene            1446..2339
                     /locus_tag="VF308_08200"
     CDS             1446..2339
                     /locus_tag="VF308_08200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436673.1"
                     /translation="MLPSLALPNLTRLLRRLAPTARDDADETTLSPPHERALAAAWGW
                     HGADGALPFAARAAAADGIAVHGRAWGLVTPVHWHVGRAQVSMADPAALGLAELESRA
                     FFEALRELFESEGFEWHWAAPSRWYAAHPSLAHLPCASLDRVIGRNVDFWLDAGARAD
                     RHAARIRRLQSEVQLLLYPHPINDAREARGKLAVNSFWLSGCGEPQPAGLVSIEVDDT
                     LRRALLAGDAAGWGTAWSALDARVIAGLLEAANGDDRSVSLTLCGERGWQRYERAPHS
                     LWQRLRATTQTPRVHDLLEAL"
     gene            2339..4072
                     /gene="recJ"
                     /locus_tag="VF308_08205"
     CDS             2339..4072
                     /gene="recJ"
                     /locus_tag="VF308_08205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008297 - single-stranded DNA
                     exodeoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEX7436674.1"
                     /translation="MAAPNRPTLVLRDAPPRVVWALEQAGVHPLLARLFAGRGVRAAD
                     ELDDGLGRLLTPADLHGAEAAARLLADAIGAGKRLCIVADYDCDGATACAVALRGLAL
                     LGAAKETLHFVVPDRAVHGYGLTPAIVDLALQLRPDVLITVDNGIASLEGVAHARAHG
                     LTVVVTDHHLPALVDERVVLPDADVIVNPNQPGCAFASKNLAGVGVIFYVLLALRSEL
                     RARGAFAAENQPRLDALLDLVALGTVADVVRLDPNNRRLVAQGLKRVRAGRMQPGVAA
                     LFAAAGRDPRRASAFDFGFALGPRINAAGRLSDMTLGIECLVTDDAAKATELAQRLDA
                     INRERRELESGMREQAEALLESLMPEDEPPAALSIFDPDFHEGVIGIVASRLKDRVHR
                     PTFVFALGRDGMLKGSGRSIAGFHLRDALDLVSKRHPGVLKRFGGHAMAAGCTIDEAD
                     FETFDAALRQVALEWLDAATLARVLRSDGPLASEYFSVDAVRAMDAQVWGQAFEAPLF
                     SDEVEIASQRLVADKHLKLTLRCAGAVREAIWFGRTEPIAERVRLAYRVSLDEYNGRE
                     RVQMVVEAAID"
     gene            4133..>4319
                     /locus_tag="VF308_08210"
     CDS             4133..>4319
                     /locus_tag="VF308_08210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011806534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEX7436675.1"
                     /translation="MNADLHCHSVVSDGTLEPEAIAARAHANGVELWALTDHDEVGGQ
                     RRACEAALALGMSYLTGT"
BASE COUNT          631 a         1554 c         1506 g          628 t
ORIGIN      
        1 ccgctgcctt cggcatagcg cttgtgcagg cccatcgcct tgacgatcga gggcccctcg
       61 tccaccgcct cactcatagc gcagcgcctc ggccggctgg acccggctcg cacgccagct
      121 cggatagagc gtcgcgagga acgacagcac cagcgagatc acgacgatcg gcacgatatc
      181 gccgctctgc gggtcgctcg gcatgcggct gatgaggtag acgctgctcg gcaggaagct
      241 cacctgcagc aggcgctcga tgaacggcac gatcacgtcg acgttgaagg cgacgaggag
      301 gccgagcgcc acccccgcga aggttccgat gatgccggac aaggcccctt gcaccatgaa
      361 gatcgacatc accgagcccg ggctcgcgcc gagcgtgcgc aggatggcga tgtcggcgcg
      421 cttgtcggtc acggtcatga cgagcgtcga gacgaggttg aacgcggcga ccgcgacgat
      481 cagggtcagg atgataaaca tcaggcgctt ctcgacctgc acggcggcga accagttgcg
      541 gttggtgcgg gtccagtcgc gcaccgtgac gccgggcccg aggctttgcg cgagctcggc
      601 cgagacctcg cgcgcgcgct gcaggtcctt gagcctcaac tgcacgccgg tcggcccctc
      661 gacccggaac agccgggcgg cgtcgtcgac atggatccag gccaggccgc tgtcgtattc
      721 gtagtggccg gcgtcgaagg ttccgaccac tgtgaactgc ttgaggcgcg gcacgacgcc
      781 cgccggcgtc acctgcccgc ccggggcgac gagggtgacc ttgtcgccgg gccgcacctc
      841 gagcgagcgc gccagttcga tgccgagcac gatgccccag ccgcccggca cgaggcgcgt
      901 cagggtcgtg tccttcaatt gcgccgcgag gtcggtgacg gtggcctcgt cgtttggcga
      961 gatgccgcgc acgaccgccc cgcgcatctc gtcgccacgc gcgattagcg cctgcgcggc
     1021 gatgaagggc gccgcgccga tgacctcggg gttgcggcgc gccgccgccg cggtcgcctg
     1081 ccagtcggcg agtgccgcgc cctgcggatc gagcacctcg atgtgcgcga tcaccgagag
     1141 catccggttc tgcacttcct tctggaagcc gttcatcacc gagagcacga tgatgagcgc
     1201 ggcgacgccg agcgcgatgc cgagcaccga cacgcccgaa atgaacgaga tgaaacggtt
     1261 gcgtcgcccg gcccgaccga cccgcgtata gcgccagccg atctgcagtt cgtaaggcca
     1321 gttcatgggg aacggatgct acaggagggt cgccccggcg aaggttcctc ggaccgcacc
     1381 ggataatcgg agtcatgcac ctgttgattc cgtttgcctc cgcgttgtcg gaggaggctg
     1441 tgcgggtgct gccctccctc gcgctgccga acctgacgcg gcttttacga cgcctcgcgc
     1501 ccacggcgcg cgacgacgcc gacgagacca cgctgtcgcc gccgcacgag cgtgccctcg
     1561 cggccgcatg gggctggcac ggcgcggacg gggcgctgcc ctttgccgcg cgggccgcgg
     1621 cggcggacgg catcgcggtg cacggccgtg cctgggggct ggtgacgccg gtgcactggc
     1681 acgtcggacg ggcccaggtc tcgatggccg accccgctgc gctcgggctc gccgagctcg
     1741 aatcgcgcgc gttcttcgag gcgctgcgcg agctcttcga gagcgagggc ttcgagtggc
     1801 actgggcagc gccgagccgc tggtatgcgg cgcacccgag cctcgcccac ctcccctgcg
     1861 cgtcgctcga tcgggtcatc ggccgcaacg tcgatttctg gctcgacgca ggtgcgcgag
     1921 ccgaccgcca cgccgcacgg atccggcgcc tgcagagcga ggtgcagttg ctgctctacc
     1981 cgcacccgat caacgacgcg cgggaagcgc gcggcaaact cgccgtgaac tcgttctggc
     2041 tcagcggttg cggcgaaccg caaccggccg gcctggtatc gatcgaggtc gacgacacgc
     2101 tgcggcgcgc gctgctggcc ggcgacgcgg ccggctgggg aacggcctgg tccgcactcg
     2161 acgccagggt gatcgcaggc ctgctcgagg ccgcgaacgg cgacgatcga tcggtctcgc
     2221 tcacgctttg cggtgaacgc ggctggcaac gctacgagcg cgcgccgcac tcgctctggc
     2281 aacgcctgcg cgcgacgacg caaacgccgc gcgtccacga cctgctggag gcgctctgat
     2341 ggcggctccg aaccggccga cgctggtcct gcgcgatgcc ccgccgcggg tcgtctgggc
     2401 gctcgagcag gccggcgtgc acccgctgct ggcgcgcctc ttcgccgggc gcggcgtgcg
     2461 cgccgcggac gagctcgacg acggtctcgg ccgccttctg acgcccgcag atctgcacgg
     2521 tgccgaggcc gccgcgcgcc tgctcgccga tgcgatcggc gcaggaaagc gcctgtgcat
     2581 cgtcgccgac tacgattgcg acggcgcaac ggcctgcgcg gtcgcactgc gcggactcgc
     2641 gctcctcggc gcggccaagg agacgctgca tttcgtggtc cccgaccggg cggtgcacgg
     2701 ctatggcctc accccggcca tcgtcgatct cgcgctgcaa ttgcgccccg acgtgctgat
     2761 cacggtcgac aacggcatcg ccagcctcga aggcgtggcc catgcgcgcg cgcacgggct
     2821 caccgtcgtg gtgaccgatc accacctgcc ggcgctcgtc gacgagaggg tcgtgctgcc
     2881 cgatgccgac gtgatcgtca acccgaacca gcccggctgc gccttcgcga gcaagaacct
     2941 cgccggcgtc ggcgtgatct tctacgtgct gctggccctg cgcagcgagc tgcgcgcgcg
     3001 cggcgcgttc gcggcggaga accaaccgcg cctcgacgcc ctgctcgacc tcgtggcgct
     3061 gggcaccgtc gccgacgtgg tgcggctcga cccgaacaac cggcgcctcg tcgcgcaagg
     3121 cctgaaacgg gttcgcgccg gtcgcatgca acccggcgtc gcggccttgt tcgcggcggc
     3181 ggggcgcgac ccgcggcgcg ccagcgcgtt cgatttcggc ttcgcgctcg ggccacgcat
     3241 caacgcggcc gggcgccttt ccgacatgac gctcggcatc gagtgcctgg tcaccgacga
     3301 cgcggcgaag gccaccgaac tggcgcagcg gctcgatgcg atcaaccgcg aacggcgcga
     3361 actcgaatcg gggatgcgcg agcaggccga ggcgctgctc gagagcctga tgcccgaaga
     3421 cgagccgccc gcggccctct cgatcttcga tccggatttc cacgagggcg tgatcggcat
     3481 cgtcgcctcg cgcctgaaag accgcgtgca ccggccgacc ttcgtgttcg cgctcggccg
     3541 cgatggcatg ctgaagggct cgggccgttc gatcgcgggc ttccacttgc gcgacgcact
     3601 cgacctcgtc agcaagcgcc accccggcgt gctcaagcgc ttcggcggtc atgcgatggc
     3661 ggccggctgc accatcgacg aggccgattt cgagaccttc gacgccgcgc tgcgccaggt
     3721 cgcgctcgaa tggctcgacg ctgcgacgct cgcccgcgtg ctgcgcagcg acggcccgct
     3781 ggcgagcgag tatttcagcg tcgatgcggt gcgcgcgatg gacgcgcagg tctggggcca
     3841 ggccttcgag gcgccactct tcagcgacga ggtcgagatc gcctcgcagc gcctggtcgc
     3901 cgacaagcac ctgaagctga ccctgcgctg cgccggcgcc gtgcgcgagg cgatctggtt
     3961 cggacgcacc gaaccgatcg ccgaacgcgt ccggctcgcc taccgcgtga gcctcgacga
     4021 gtacaacggc cgcgagcgcg tgcagatggt ggtcgaagcg gcgatcgatt gaccctgcac
     4081 gggcacgcgt gtcggcgccg ctccctacaa tgaggtcccc ccgcacgcat tcatgaacgc
     4141 cgatctgcac tgccactccg tcgtctccga cggcacgctc gaaccggaag cgatcgcagc
     4201 gcgggcgcat gcgaacggcg tcgagctatg ggcgctgacg gaccatgacg aagtcggcgg
     4261 ccagcggcgc gcctgcgagg ccgcgctggc gctcggcatg tcctacctca ccggcaccg
//
LOCUS       DASVHM010000434         4669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_970902, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000434 DASVHM010000000
VERSION     DASVHM010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4669
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_970902"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..587
                     /locus_tag="VF308_08215"
     CDS             <1..587
                     /locus_tag="VF308_08215"
                     /EC_number="2.6.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047304 - 2-aminoethylphosphonate-pyruvate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0019700 - organic phosphonate catabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2-aminoethylphosphonate--pyruvate transaminase"
                     /protein_id="HEX7436676.1"
                     /translation="RRVRFDALVAASGKCLEGVPGMGFVLVRKAVLERCAGNSQSLAM
                     DLHDQHAYMERTGQWRFTPPTHVVAALAEAIRQFVEQGGQPARLARYTDNCRTLIDGM
                     GALGFRPFLKPELQAPVIVTFHAPADPKYDFKAFYQAAKRRGFILYPGKLTQIETFRV
                     GCIGAIGANEMQQAVHAVADALREMGIASGAPAL"
     gene            637..2022
                     /locus_tag="VF308_08220"
     CDS             637..2022
                     /locus_tag="VF308_08220"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase family protein"
                     /protein_id="HEX7436677.1"
                     /translation="MASKDKEHPAVAAVRKSGTGKVKVAVSDIDGILRGKYLHLDKFL
                     GAVQPHPGGGFGFCDVVFGWDSSDVTYDNTVLTGWQHGFPDALARLDLDTFRHVPWDG
                     GVPFFLGEFVKPDGTPSPICPRQTLKRVLARAAKLGLAPMCGMEFEWFNFAETPQSWA
                     AKQGVCPEPITPGMFGYSLLRMNHKREYLNALMDEMPAFGVPIEGLHTETGPGVYEVA
                     ILFGEALEQADRAILFKTGAKEIGARFGVMPSFMAKWSQKYPGCSGHVHQSLKEGPDG
                     KINLFYDAKASRKMSELFESYLAGQVACLMEFAPMFWPTINSYKRLVDGFWAPVKPTW
                     GMDNRTASFRVIAGSPKATRLETRCPGADVNPYLAMAAVIAAGLDGVEKGLKLTAPPI
                     TGTNQGSEHIPRAPRTLIETTRIFKQSDVARDWLGDDFVDHFAATRDWEWRQWLDGVT
                     DWELKRYLEII"
     gene            2026..3606
                     /locus_tag="VF308_08225"
     CDS             2026..3606
                     /locus_tag="VF308_08225"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436678.1"
                     /translation="METVRSKLRGWALLALLCAAQPAHAVALRIATAFDPQTMDPHAL
                     ALLYHSRIAHQVYESLLNRDEQFRIEPGLALSWQAVTPTTWRFKLRSGVVFHDGAPFT
                     VDDAVFSIQRASQPPSQRSFQLNGLVAARKADDSTLEVELALPDAVFPEKLLNLPMMS
                     RAWSVQHGVERAQDFNGKQETYAVRNANGTGAFALERYEPDVRTVLKRNPRWWGWADK
                     RSGNVDEITWIAIRSDATRLAALISGEVDLVLDPPLPDVGRLKTEPALTLLQTTDLGE
                     QYLTFDQFRDELADGEAKGRNPFKDLRVRRAVYHAINVDLIVQKVLRGLGTPTGAFLS
                     TKVDGSLAELDRRLPYDPARARALLAEAGYPNGFSVPLDCVNVAWREAGCQAMAAMLT
                     QVGIRTQLRSSPTNQFFPKLSQATASLIEFGWTPTTDAWASLNGLFHTWDKRGFGTFN
                     AGRYSNPKLDVLIDAIRVEPDLTRRRAMVGVALRLIADDLPFIPLYRRTLTWAMAKKV
                     HAVQWPSDSPELRWLRVQ"
     gene            3646..>4669
                     /locus_tag="VF308_08230"
     CDS             3646..>4669
                     /locus_tag="VF308_08230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEX7436679.1"
                     /translation="MTITRFSFPTTIHFGPGARRLAGPHLREQGLSRPLIVTDKGLAA
                     LPLVAALKAEFEAAGHAVAVYGGIWGNPTGPQAMGGAAAYRAHRADCVVGVGGGAALD
                     VAKVVGLMATHPGDVMEYVWDHPQVRPIGAALPYFVALPTTSGTGSEVGRSSVISEAD
                     THVKRVVFSPLILAKAVFADPELTLGLPPAVTAATGMDALTHNVESYLSPAYHPLCDG
                     IALEGTRIAARALATAVREPGNLQARADMMMSSMMGAIAFQKDLGAVHSCAHALGTVC
                     DLHHGLANALMIDTVLAWNAEAVPAKFDELAHAAGVAGGGAAFVPWLKALKRQIGIAA
                     NLTAAGV"
BASE COUNT          740 a         1633 c         1594 g          702 t
ORIGIN      
        1 cgcgcagggt ccgcttcgac gcgctcgtcg ccgccagcgg aaagtgtctc gagggcgtcc
       61 cggggatggg tttcgtgctg gtcaggaagg ccgtgctgga gcgctgcgcc gggaattcgc
      121 agtcgctcgc gatggacctg cacgaccagc acgcctacat ggagcgcacc ggccagtggc
      181 gtttcacgcc gccgacccac gtcgtcgcgg cgctcgcgga ggcgatccgc cagttcgtcg
      241 agcagggcgg ccagccggct cggctcgcgc gctacaccga caactgccgc acgctgatcg
      301 acgggatggg tgcgctcggc ttcaggccgt tcctcaagcc cgagctgcag gcgccggtca
      361 tcgtgacctt ccatgcgccg gccgatccga agtacgattt caaggcgttc taccaagccg
      421 cgaagcgccg cggcttcatc ctctaccccg gcaagctgac gcagatcgag accttccggg
      481 tcggctgcat cggcgcgatc ggcgcgaacg aaatgcagca ggcggtccac gcggtggccg
      541 acgccttgcg cgagatgggc atcgccagcg gcgccccggc gctctgagcc gcgccggctc
      601 ggtatccacg acaacccaac ctgggacggc actccgatgg caagcaaaga caaggaacat
      661 ccggcggtcg ctgcggtcag gaagagcggc accggcaagg tcaaggtcgc ggtcagcgac
      721 atcgacggca tcctgcgcgg caagtacctg cacctcgaca agttcctcgg cgcggtgcag
      781 ccgcacccgg gcggcggctt cggattttgc gatgtcgtgt tcggctggga ctcgagcgac
      841 gtgacctacg acaacacggt cctgaccggc tggcagcatg gatttccgga tgcgctcgcc
      901 cggctcgacc tcgacacctt ccgtcacgtg ccgtgggacg gcggcgtgcc gttcttcctc
      961 ggcgagttcg tcaaacccga cggcacgccg tcgccgatct gtccgcgcca gaccttgaag
     1021 cgcgtgctcg cgcgcgctgc caagctcggc ctggcaccga tgtgcgggat ggagttcgag
     1081 tggttcaact tcgccgagac gccgcagagc tgggccgcga agcagggcgt ctgcccggaa
     1141 ccgatcacgc ccggcatgtt cggctattcg ctgctgcgga tgaaccacaa gcgcgagtac
     1201 ctgaacgcgc tgatggacga gatgccggcg ttcggcgtgc cgatcgaggg cctgcacacc
     1261 gagaccgggc cgggcgtcta cgaggtcgcg atcctgttcg gcgaggccct ggagcaggcc
     1321 gaccgcgcca tcctcttcaa gaccggtgcg aaggaaatcg gcgcgcgctt cggcgtgatg
     1381 ccgagcttca tggcgaagtg gtcccagaag taccccggct gcagcggcca cgtgcaccag
     1441 agcctgaagg aaggcccgga cggcaagatc aatcttttct acgacgcgaa ggcgtcgcgc
     1501 aagatgagcg agctgttcga gagctacctc gccggccagg tcgcgtgcct gatggagttc
     1561 gcgccgatgt tctggccgac gatcaacagc tacaagcgcc tcgtcgacgg tttctgggcg
     1621 ccggtgaagc ccacctgggg catggacaac cggaccgcga gtttccgcgt catcgccgga
     1681 agtccgaaag cgacccgcct cgagacgcgc tgcccgggcg ccgacgtcaa cccgtacctg
     1741 gcgatggcgg ccgtgatcgc cgccggactc gacggcgtcg agaagggctt gaagctcacc
     1801 gcgccgccga tcaccggcac caaccagggc tccgagcaca tcccgcgtgc gccgcgcacg
     1861 ctgatcgaga cgacgcgcat cttcaagcag tcggacgtcg cgcgcgattg gctaggcgac
     1921 gacttcgtcg accacttcgc cgcgacccgc gactgggaat ggcgccagtg gctggacggc
     1981 gtgacggact gggaattgaa gcgctacctc gagatcatct gaacgatgga aacggtccgc
     2041 tcgaaactgc gcgggtgggc actcctcgcg ctgctctgcg cggcgcagcc ggcgcacgcg
     2101 gtggcgctgc gcatcgcgac cgcgttcgac ccgcagacga tggatccgca cgcgctcgcg
     2161 ttgctctatc actcgcgcat cgcgcatcag gtctacgagt cgctgctgaa ccgcgacgaa
     2221 cagttccgga tcgaacccgg cctcgcgctg tcgtggcagg cggtcacgcc gacgacctgg
     2281 cgcttcaagc tgcgcagcgg cgttgtcttc cacgacggcg cgccgttcac ggtcgacgac
     2341 gcggtcttct cgatccagcg cgcgtcgcag ccgccttcgc agcgctcgtt ccagctcaac
     2401 ggtctggtcg cggcgcgcaa ggccgacgac tcgacgctcg aggtcgagtt ggcgctgccg
     2461 gacgccgtct tcccggagaa gctgctgaac ctgccgatga tgagccgggc ctggtcggtc
     2521 cagcacggcg tcgagcgcgc gcaggacttc aacggcaagc aggagaccta cgcggtccgc
     2581 aacgccaacg gcaccggcgc gttcgcgctc gagcgctacg agcccgacgt ccgcaccgtc
     2641 ctcaagcgca acccgcgctg gtggggctgg gccgacaagc gctccggcaa tgtcgacgag
     2701 atcacgtgga tcgcgatccg ctccgatgcg acgcggctcg ccgcgctgat ctcgggcgag
     2761 gtcgacctgg tgctcgaccc gccgctgccc gacgtcggcc ggctcaagac cgagccggcg
     2821 ctgacgctgc tgcagaccac cgacctaggc gagcagtacc tgaccttcga ccagttccgc
     2881 gacgagctcg ccgacggcga ggcgaagggc cgcaatccgt tcaaggacct gcgcgtgcgg
     2941 cgcgccgtct accacgcgat caacgtcgac ctgatcgtgc agaaggtgct gcgcgggctc
     3001 ggcacgccga ccggcgcgtt cctgtcgacg aaggtcgacg gctcgctcgc cgagctcgac
     3061 cggaggctgc cgtacgaccc ggcgcgggcg cgcgcgctgc tcgccgaagc gggttacccg
     3121 aacggctttt cggttccgct cgactgcgtc aacgtcgcct ggcgcgaggc cggctgccag
     3181 gcgatggcgg cgatgctgac gcaggtcggc attcgcaccc agctgcgctc gtcgccgacg
     3241 aaccagttct tcccgaagct gagccaagcc accgcgagcc tgatcgagtt tggatggacg
     3301 ccgacgaccg atgcttgggc gtcgcttaat ggccttttcc acacttggga caagcgcggc
     3361 ttcggcacct tcaacgccgg gcgctacagc aacccgaagc tcgacgtgct gatcgacgcg
     3421 atccgggtcg agcccgacct gacgcggcgc cgtgcgatgg tcggcgtcgc gctgcgcctg
     3481 atcgccgacg acctgccgtt cattccgctc taccgccgca cgctgacctg ggcgatggcg
     3541 aagaaggtgc acgcggtgca atggccgagc gacagccccg aactgcgctg gctccgcgtc
     3601 cagtgagccc cgcccccgac gaatccactc ttcccgacga cagccatgac gatcacccgc
     3661 ttctcgtttc cgacgacgat ccatttcggt cccggcgcgc gccgcctcgc cggtccgcac
     3721 ctgcgtgagc agggcctgtc caggccgctg atcgtcaccg acaagggcct cgccgcgctg
     3781 ccgctcgtcg ccgcgctgaa ggccgagttt gaagcggccg gccatgcggt cgccgtgtac
     3841 ggcggcatct ggggcaaccc gaccggcccg caggcgatgg gcggcgcggc tgcctaccgc
     3901 gcgcaccggg ccgactgcgt cgtcggcgtc ggcggcggcg cggcgctcga cgtcgcgaag
     3961 gtcgtcggcc tgatggcgac gcacccgggc gatgtgatgg agtacgtctg ggaccacccg
     4021 caggtgcggc cgatcggcgc ggcgctaccg tacttcgtcg cgctgccgac gacgtcgggc
     4081 accggcagcg aagtcgggcg cagcagcgtg atcagcgaag ccgacacgca cgtcaagcgc
     4141 gtggtcttct cgccgctgat actcgcgaag gcggtcttcg ccgatcccga gctgaccctt
     4201 ggcctgccgc cggcggtgac cgcggcgacc ggcatggatg cattgacgca caacgtcgag
     4261 agctacctgt cgccggccta ccacccgctg tgcgacggga tcgcgctcga aggcacgcgg
     4321 atcgccgcgc gcgctctcgc gaccgcggtg cgcgagccgg gcaacctgca ggcgcgcgcc
     4381 gacatgatga tgagttcgat gatgggcgcg atcgcgttcc agaaggacct cggcgcggtc
     4441 cattcgtgcg cacatgcgct cggcaccgtc tgcgacctgc atcacggcct cgcgaacgcg
     4501 ctgatgatcg acacggtgct ggcgtggaac gccgaggcgg tgccggcgaa gttcgacgaa
     4561 ctcgcgcatg ccgccggtgt cgccggcggc ggggccgcct tcgtgccgtg gctgaaggcg
     4621 ttgaagcgcc agatcgggat cgccgcgaac ctgacggccg ccggcgtga
//
LOCUS       DASVHM010000435         3903 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_318366, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000435 DASVHM010000000
VERSION     DASVHM010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3903)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3903)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3903
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318366"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..746
                     /locus_tag="VF308_08235"
     CDS             <1..746
                     /locus_tag="VF308_08235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEX7436680.1"
                     /translation="DEEFARLRLRGLVDECPEPRASVVGEAANASQAMVWLATQQCDV
                     LLLDVQMPGRDGTQLAAELRGQAHAPAVVFVTAHVEHAVKAFDLEAVDYVTKPVRRER
                     LQAALQRVVQRLGRAPAEPAVEDEEVPVIVVSDRGRVVRVPVSEVLYLKAELKYVTLR
                     TPVHTYVLDDSLSELEERLGARFMRVHRNALVARKAVRALERKGIAGEGDDEGGEAWA
                     VCIAPVEEWLAVSRRQVAAVREALVAVGL"
     gene            complement(792..1217)
                     /locus_tag="VF308_08240"
     CDS             complement(792..1217)
                     /locus_tag="VF308_08240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436681.1"
                     /translation="MTHRRPLLGMALLAAWLASGAEAREDGRPFPTARTDAIESCVEG
                     QAIRFHPEHRRVVLDAADAAAVGAALVRRYPIIERDGLAPQRIVLWRKPAAGWLYIAL
                     LENPARQGEVCYTATFVAARFDLTPALLEKYFGAGVANE"
     gene            complement(1277..>3903)
                     /gene="ppc"
                     /locus_tag="VF308_08245"
     CDS             complement(1277..>3903)
                     /gene="ppc"
                     /locus_tag="VF308_08245"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HEX7436682.1"
                     /translation="AGRALNRLLKGLSGDQTVSVIRAFSFFSHLANIAEDRHHVRRRR
                     HHERHGHLQEGSLAMAFVRLGQRGIDATRIADTLAGAFISPVLTAHPTEVQRKSILDA
                     ERAIAELVGERDALLGDGDLARNTALLRARVTQLWQTRLLRSTRLAVADEIENALSYY
                     HSTFLTQVPLLYREIEEALPGFEVRSFFRMGNWIGGDRDGNPFVTAATLRMAFERQCE
                     TALRFYLTQLHELGAELSISATLSPVTPEMNALADRSGDHNPHREDEPYRRALIGMYA
                     RLAATLHELTGTEALRHAVAPQNPYAAAAELLADLQVIEASLRRHHAAALTEPRLRPL
                     MRAVQVFGFHLATVDLRQSSDKHEAVIAELLKVARVEADYTALGEAARRALLLRLLDD
                     ARPLRVVGAVQAEAYSELARSELAIFETAALMLRRYGREALRHCIISHTETVSDLLEV
                     LLLLKEVGLLRGTLESGAACALIVSPLFETIADLREAEPIMRAFYALPGVAAMIQASG
                     AEQDIMLGYSDSNKDGGAFTSSWELYGAEIALAELFAGLRASYGITLRLFHGRGGTVG
                     RGGGPSYQAILAQPPGTVNGQIRLTEQGEVIASKYANPEIGRRNLETLVAATLEATLL
                     RPTQDAPQSFMGAAAEISAASMAAYRKLVYETPGFTEYFFSATPIREIAELNIGSRPA
                     SRAKSDGGPPAIEDLRAIPWGFSWGQCRVGLPGWFGFGCAVEHYLRGDAATRKTRLAL
                     LRRMHRQWPFFKTLLSNVDMVLAKSDLGIAARYVGLVEDSKLGKRIFDAIRAEWARTD
                     AALALITGEKGRLASNPSLARSIEYRFPYLDPLNHLQVELMRRYRQTRSGDPANERVK
                     TGIHISINGLAAGLRNTG"
BASE COUNT          556 a         1284 c         1452 g          611 t
ORIGIN      
        1 acgacgagga gttcgcgcgc ctgcgcttgc gcggtctcgt cgatgaatgc cccgaaccgc
       61 gcgcgagcgt tgtcggcgag gcggcgaacg cgtcgcaggc gatggtctgg ctcgcgaccc
      121 agcagtgcga cgtgctgctg ctcgatgtgc agatgcccgg ccgcgacggc acccagctcg
      181 cggccgagtt gcgcgggcag gcgcacgcgc ctgcggtcgt cttcgtcacc gcgcatgtcg
      241 agcatgcggt caaggccttc gatctcgagg ccgtcgacta tgtcaccaag ccggtccggc
      301 gcgagcgcct gcaggccgcg ctgcaacgcg tggtgcagcg cctcgggcgc gcgccggccg
      361 agccggcggt cgaagacgaa gaggtgccgg tcatcgtcgt cagcgatcgc ggccgggtgg
      421 tgcgcgtgcc ggtgagcgag gtgctctacc tgaaggccga actcaagtac gtgacgctgc
      481 gcacgccggt gcacacctac gtgctcgacg attcgctgtc ggagctggag gagcgtctcg
      541 gggcgcgctt catgcgcgtc catcgcaatg cgctcgtcgc ccgcaaggcc gtgcgcgcgc
      601 tcgagcgcaa ggggatcgcc ggcgagggcg acgacgaggg cggcgaggcc tgggccgtgt
      661 gcatcgcgcc ggtcgaggaa tggcttgccg tgtcgcggcg ccaggtggcc gcggtgcgcg
      721 aggcgcttgt cgcggtcgga ctctgatgct cgggtttggc ggcgttcggc tctccgccgg
      781 ccgagcttcg atcactcgtt cgcgaccccg gcaccgaaat acttctcgag cagggctggc
      841 gtgaggtcga agcgggcggc gacgaacgtc gccgtgtagc acacctcgcc ttgcctggcg
      901 gggttttcga gcagcgcgat gtagagccaa ccggccgcgg gctttctcca cagcacgatg
      961 cgctgcggcg ccaggccgtc gcgctcgatg atggggtagc gccgcaccaa cgcggcgccg
     1021 accgccgccg cgtcggccgc gtcgagaacg acgcgccggt gctcgggatg gaagcggatc
     1081 gcctggcctt cgacgcagct ttcgatcgca tcggttcgcg ccgtggggaa ggggcgcccg
     1141 tcttcgcgcg cttcggcgcc gcttgcgagc caggcggcca gcagggccat gccgagaagg
     1201 gggcgccgat gcgtcatccg tgggttgtgc cagcgcgcct gcgtcgagtc aagcgtaggg
     1261 ccgtcggcgc gagccctcag ccggtgttgc gcaagcccgc cgcgagcccg ttgatcgaga
     1321 tgtggatgcc ggttttcacg cgttcgttgg cggggtctcc gctgcgggtc tgccgatagc
     1381 gccgcatcag ctcgacctgc aggtggttga gcggatcgag gtacgggaag cggtactcga
     1441 tcgagcgggc gaggctcggg ttcgacgcga gccgcccttt ttcgccggtg atgagcgcga
     1501 gcgcggcatc cgtccgcgcc cattcagcac ggatcgcgtc gaagatgcgc ttgccgagct
     1561 tgctgtcttc gaccaggccg acatagcgcg cggcgatgcc gaggtcgctc ttggcgagca
     1621 ccatgtcgac gttggagagc aaggtcttga agaacggcca ctgccggtgc atccgccgca
     1681 gcagcgcaag gcgggttttc cgggtcgcgg cgtcgccgcg caggtagtgc tcgacggcgc
     1741 aaccgaagcc gaaccatccg ggcaggccga cccggcactg gccccagctg aagccccacg
     1801 gaatcgcgcg caggtcttcg atcgccggag ggccgccgtc tgacttggcg cgcgaggccg
     1861 ggcgcgagcc gatgttgagc tcggcgatct cgcggatcgg cgtggcgctg aagaagtact
     1921 ccgtgaatcc cggcgtctcg tagaccagct tgcgataagc ggccatgctg gcggcgctga
     1981 tctcggcggc cgcgcccata aagctctgcg gcgcgtcctg cgtcggtcgc agcagcgtgg
     2041 cctcgagcgt ggccgcgacc agggtttcga gattgcgccg gccgatctcg gggttcgcat
     2101 atttcgaggc gatcacctcg ccctgttcgg tgaggcggat ctggccgttc accgtgccgg
     2161 gcggctgcgc caggatcgcc tggtagctcg ggccgccgcc gcgccccacc gtgccgccgc
     2221 ggccatggaa gaggcgcagg gtgatgccat acgatgcgcg caggcccgcg aacagctcgg
     2281 ccagcgcgat ctcggcgcca tagagttccc agctgctcgt gaatgcgccg ccgtccttgt
     2341 tgctgtcgct gtagccgagc atgatgtcct gctcggcgcc ggacgcctgg atcatcgcgg
     2401 cgacgccggg cagcgcgtag aacgcgcgca tgatcggttc ggcctcgcgc agatcggcga
     2461 tggtctcgaa cagcggcgag acgatcaggg cgcaggcggc gccgctttcg agcgtgccgc
     2521 gcagcaggcc gacttccttc aacagcagca gcacctcgag caggtcgctc accgtctcgg
     2581 tgtgggaaat gatgcaatgg cgcagcgcct cgcggccgta gcggcgcagc atgagcgcgg
     2641 cggtctcgaa gatcgcgagt tccgagcgcg ccagctcgct gtaggcctcg gcctgcacgg
     2701 cgccgacgac gcgcagcggc cgcgcatcgt cgagcaggcg cagcagcagg gcgcggcgcg
     2761 ccgcttcgcc aagggcggtg tagtcggcct cgaccctcgc gaccttcaag agctcggcga
     2821 tcaccgcttc atgcttgtcg gaactctggc gcaggtcgac ggtggcgagg tgaaagccga
     2881 acacctggac cgcgcgcatc agcgggcgca ggcgcggctc ggtcagggcg gcggcgtgat
     2941 gcctgcgcag cgaggcctcg atcacctgca ggtcggcgag cagctcggcc gccgcggcgt
     3001 aggggttctg cggtgcgacc gcatggcgca gcgcctcggt gccggtcagc tcgtgcaggg
     3061 tcgcggcgag ccgcgcatac atgccgatca gggcgcgccg atacggctcg tcctcgcggt
     3121 gcgggttgtg gtcgccggac cgatcggcga gcgcattcat ctcgggcgtg accgggctga
     3181 gcgtcgccga gatcgagagt tcggcgccga gttcgtgcag ctgcgtgagg tagaagcgca
     3241 gcgcggtctc gcattggcgt tcgaaagcca tgcgcagggt cgccgcggtg acgaacgggt
     3301 tgccgtcgcg gtcgccgccg atccagttgc ccatccggaa gaagctccga acctcgaagc
     3361 cgggcagcgc ctcctcgatc tcgcggtaca gcagcggtac ctgcgtcagg aaggtgctgt
     3421 ggtaatagct gagcgcgttc tcgatctcgt cggcgacggc gaggcgcgtc gaacgcagca
     3481 ggcgcgtctg ccagagctgg gtgacgcggg cccgcaggag ggccgtgttg cgggcgaggt
     3541 caccatcacc gaggagcgcg tcgcgttcgc cgaccagctc ggcgatcgcc cgctccgcat
     3601 cgagaatgct cttgcgctgc acctcggtcg ggtgcgccgt caacaccggc gaaatgaagg
     3661 ctccggcgag cgtgtccgcg atccgggtgg cgtcgatgcc gcgctgaccg aggcgcacga
     3721 acgccatcgc gagcgaccct tcctgcaaat ggccatggcg ctcgtgatgg cggcgccgcc
     3781 gcacgtgatg gcggtcctcg gcgatgttgg cgaggtgcga gaaaaagctg aacgcgcgga
     3841 tcacgctcac ggtctggtcg ccgctcaggc ctttgagcag ccggttgagt gcgcgcccgg
     3901 ccg
//
LOCUS       DASVHM010000436         2565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_681398, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000436 DASVHM010000000
VERSION     DASVHM010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_681398"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..235)
                     /locus_tag="VF308_08250"
     CDS             complement(<1..235)
                     /locus_tag="VF308_08250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436683.1"
                     /translation="MKILRPLAALGIVAVSAASAGTLTVTDAAGQPLATAMVREVAAA
                     PRKLDTSDHGYPAPGQARTVDIDITRFTDAAGRA"
     gene            complement(232..1065)
                     /locus_tag="VF308_08255"
     CDS             complement(232..1065)
                     /locus_tag="VF308_08255"
                     /inference="COORDINATES: protein motif:HMM:NF004825.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7436684.1"
                     /translation="MATTHDPLGRTVVITGAAGGLGSALARRFGAAGAKVVALDLDGA
                     RAEALAADLRAQGVEALGLACDVGDEAACRGAIARAIDSFGGIDVLVNNAGISARCLL
                     RETDPGVIRRVMAVNFFGAVHSTQAALESLIARRGQIVAISSIAGFSPLVGRTAYAAS
                     KHALHGFFDSLRSELCEDGVDVMLVCPSFIATGIEGAALGGDGRVAAAPRRTGGGEAQ
                     PEAVAARIVDAARRRQRLCLPATTAWLAWWISRLAPRTYERLMLRRIGAEFDPSSRSK
                     T"
     gene            complement(1069..2055)
                     /locus_tag="VF308_08260"
     CDS             complement(1069..2055)
                     /locus_tag="VF308_08260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019142345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7436685.1"
                     /translation="MTGARILVTGGGGYLGSQVVAALARSSAEGDAGPAGCVVALDVR
                     EMPAERRLPSVVYAAGDIRDPALVDLLREHCIDTVVHLAAIVTPGRKADRDFEYQVDV
                     EGTRNVLQACVGAGARHIVVSSSGAAYGYHADNPAWLSETDAIRGNREFAYSWHKRLV
                     EEMLAQYREREPQLRQTVFRIGTILGETVSNQITALFDKRRPLALAGSDSPFVFIWDQ
                     DVVGAILHAIRNGRAGIYNVAGDGALTIHDIAARMGKRCRVLPPWLLQAALWVGKHLG
                     LTQYGPEQLRFLHYRPVLDNRRLKEEFGYRPRMSSAEVFDLWWAARRAAGKG"
     gene            complement(2052..>2565)
                     /locus_tag="VF308_08265"
     CDS             complement(2052..>2565)
                     /locus_tag="VF308_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019142346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HEX7436686.1"
                     /translation="NALLRAFSLDPLHMLIDVAMLLGIPLAAGLAVSHRFPALAKKVH
                     GPMRTFSLVVFIAFVVGALAMNWAIFREYGRFVVVVVLVHNALALAGGYAFARAAGLP
                     ERDRRAVAFETGIQNSGLGLVLVFNFFGGLGGMAIVTAWWGIWHIVAGVSLSTFWMKR
                     PPEAAAVGVA"
BASE COUNT          403 a          922 c          908 g          332 t
ORIGIN      
        1 tcgcgcggcc tgcggcatcg gtgaagcgtg tgatgtcgat gtcgaccgtg cgggcctggc
       61 cgggcgccgg gtagccgtga tcggaggtgt cgagcttgcg cggtgcggca gccacctcgc
      121 gcaccatcgc ggtggccagc ggctggccgg cggcatcggt gacggtgagc gtcccggccg
      181 aagcggccga cacggcgacg ataccgagtg cggccagcgg acgaaggatc ttcatgtctt
      241 gctccgtgac gacggatcga attcggcacc gatgcgacgc agcatcaggc gctcgtaggt
      301 gcgtggtgcg aggcggctga tccaccaggc cagccaggcg gtcgtagccg gcaggcacag
      361 gcgctggcgg cgtcgcgccg catcgacgat gcgtgcggcg accgcctctg gctgcgcctc
      421 gccgccgccg gtccggcgcg gcgcggccgc gacgcggccg tcaccgccga gcgccgcacc
      481 ttcgatgccg gtggcgatga acgaggggca gaccagcata acgtcgacgc cgtcctcgca
      541 cagctcgctg cgcaggctgt cgaagaaacc gtgcagcgca tgcttgctcg cggcatacgc
      601 ggtgcggccg accagcggcg agaagccggc gatgctcgag atcgcgacga tctgcccgcg
      661 ccgcgcgatc agcgattcga gcgccgcctg ggtgctgtgc accgcgccga agaagttgac
      721 cgccatcacg cggcggatga cgccgggatc cgtctcgcgc aacaggcaac gcgccgagat
      781 gccggcgttg ttgaccagca cgtcgatgcc gccgaaggag tcgatcgcgc gggcgatcgc
      841 cccgcggcac gcagcctcgt cgcccacgtc gcaggccagg cccagcgcct cgacaccttg
      901 cgcgcgcaga tccgcggcca aggcctcggc ccgagcgccg tccaggtcga gagccactac
      961 cttcgcaccg gccgcgccga agcggcgagc gagcgcgctg cccaggcctc cggccgcacc
     1021 ggtgatcacg acggtcctgc caagagggtc gtgcgtcgtc gccatcgttc agcccttgcc
     1081 ggccgcgcgg cgcgcggccc accagaggtc gaacacctcg gccgagctca tgcgcgggcg
     1141 gtagccgaac tcctccttca gccgccggtt gtcgagcacc ggccggtagt gcaggaagcg
     1201 cagctgctcc ggaccgtact gagtcaggcc caggtgcttg ccgacccaca acgcagcctg
     1261 cagcaaccac ggcggcagca cgcggcagcg cttgcccatg cgcgcggcga tgtcgtgaat
     1321 cgtcagcgcc ccgtcgccgg ccacgttgta gatgccggcc cggccgttgc ggatcgcatg
     1381 caggatcgca ccgaccacgt cctggtccca gatgaagacg aagggactgt ccgagccggc
     1441 gagcgccagc gggcgccgct tgtcgaacag cgcggtgatc tggttgctga ccgtctcgcc
     1501 gaggatggtg ccgatgcgaa acaccgtctg ccgcaactgc ggctcgcgct cgcggtactg
     1561 cgccagcatc tcctcgacca accgcttgtg ccacgagtac gcgaactctc ggttgccgcg
     1621 gatcgcgtcg gtctcgctca gccaagccgg gttgtcggcg tggtagccgt aggcggcgcc
     1681 cgacgacgag accacgatat gccgggcgcc ggcgccgacg caggcctgca gcacgttgcg
     1741 cgtgccttcg acgtcgacct ggtattcgaa gtcgcggtcg gccttgcggc ccggcgtgac
     1801 gatggccgcg aggtgcacca cggtatcgat gcagtgctcg cgcagcaggt cgaccagggc
     1861 cgggtcgcgg atgtcgccgg cggcgtagac cacgctgggc aggcggcgct cggcgggcat
     1921 ctcgcgcacg tcgagcgcga cgacgcagcc ggcgggtccg gcgtcgccct ccgccgacga
     1981 ccgcgccagc gcggcgacca cctggctgcc gaggtagccg ccgccaccgg tcacgaggat
     2041 tcgcgcacct gtcatgccac gcccaccgcc gccgcctcgg gcgggcgctt catccagaac
     2101 gtcgacaggc tgacgccggc cacgatgtgc cagatgcccc accacgcggt cacgatggcc
     2161 atgccgccca ggccgccgaa gaagttgaac accagcacca ggccgagccc ggagttctgg
     2221 atgccggtct cgaatgccac cgcgcggcgg tcgcgctcgg gcaggcccgc tgcccgggcg
     2281 aaggcgtaac ccccggccag cgccagcgcg ttgtgcacca gcacgacgac gacgacgaag
     2341 cggccgtact cgcgaaagat cgcccagttc atcgccagcg cgccgaccac gaatgcgatg
     2401 aacaccacca gcgagaaagt gcgcatcggg ccgtgtacct tcttcgccag cgccgggaag
     2461 cggtgcgaga cggcgaggcc ggccgcgagc gggatgccca gcagcatggc cacgtcaatc
     2521 agcatgtgca gcgggtcgag cgagaacgcg cgcagcagcg cgttc
//
LOCUS       DASVHM010000437         4269 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1402184, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000437 DASVHM010000000
VERSION     DASVHM010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4269
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1402184"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..643)
                     /locus_tag="VF308_08270"
     CDS             complement(<1..643)
                     /locus_tag="VF308_08270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEX7436687.1"
                     /translation="MLKQRILTAMVLLALLLPALIVKQAWPFAVLTMAAMALAGWEWA
                     RLNDAGALAAPLGIALGAACALALYAGWTTTAPRLAWWLAFLAWVLGGTWVLRAGVAG
                     WPRLPRALRWAIGLVALWTAWLALANAKAIGLNFILSVFLLVWSADVFAYFGGRALGK
                     RKLAPAISPGKSWEGVWSGMAGALLVAAAWLVIDAAGSIGTESFFSIAANRFGY"
     gene            complement(653..1396)
                     /gene="uppS"
                     /locus_tag="VF308_08275"
     CDS             complement(653..1396)
                     /gene="uppS"
                     /locus_tag="VF308_08275"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009453388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HEX7436688.1"
                     /translation="MAERPASAPAVPRHVAIVMDGNGRWAKKRHMPRFFGHKQGVDAL
                     VRTVHACADRGIEYLTVFAFSSENWKRPSEEVSSLMGLVLVAVSKYLAKLAGDGVRVR
                     IVGDRAQVSDKLRQAWQHAEDSTRHNTKIHLSVAFNYGGRWDIVQACRQAMVAGVKPE
                     DLDEATLNSYMALSYAPDPDLFIRTGGEVRISNFLLWQAAYSELVFTECLWPEFGTEE
                     LDSALAQYARRERRFGAVPAAAELVASGS"
     gene            complement(1396..1956)
                     /gene="frr"
                     /locus_tag="VF308_08280"
     CDS             complement(1396..1956)
                     /gene="frr"
                     /locus_tag="VF308_08280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011483606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEX7436689.1"
                     /translation="MTIAEIKKTAEQKMGRSIESLKNDLQKIRTGRAHTGILDQVHVD
                     YYGSPVPISQVANVTLLDARTISVQPWEKGMGAKIEKAIRESDLGLNPSAQGDLLRVP
                     MPALTEERRKELTKVARHEGEDAKIAVRNLRRDANDHARRLAKDKTISEDEERRSLDE
                     LQKLTDRTVAEIDRLISAKEAEIMAV"
     gene            complement(1969..2679)
                     /gene="pyrH"
                     /locus_tag="VF308_08285"
     CDS             complement(1969..2679)
                     /gene="pyrH"
                     /locus_tag="VF308_08285"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011801151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEX7436690.1"
                     /translation="MAAYKRILLKLSGEALMGEDAYGINRATIVRIVREVQEVTQLGC
                     EVAVVIGGGNIFRGVAGGSVGMDRATADYMGMLATVMNALALADTMRQEGITARVMSA
                     IAIEQVVEPYVRPKALQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEIGAQIVLKAT
                     KVDGIYSSDPNKDPGATRYARISFDEAIIKNLQVLDATAFALCRDQKLPIRVFSIFKS
                     GALKRVVQGEDEGTLVHV"
     gene            complement(2756..3673)
                     /gene="tsf"
                     /locus_tag="VF308_08290"
     CDS             complement(2756..3673)
                     /gene="tsf"
                     /locus_tag="VF308_08290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HEX7436691.1"
                     /translation="MAAITASMVGALRAKTDAPMMECKKALTEADGDMDKAEELLRVK
                     LGSKAGKAASRIAAEGVVAASVEGTTGALIEVNCETDFVTKNDSFLAFAKALAGLVAA
                     KNPADVAALAALPLGQDGFGPTVEDVRKGLIGKIGENMSIRRFQRYAGGGKLASYLHG
                     TRIGVLVEFEGDETAAKDVAMHVAAMKPKALTTADVSESLIAAERSVATLRAAEDAEK
                     AKAEGKAVQSPEIVARRIEGSVAKFLKEVSLHNQAFVKNDKQTVEQMLKEKSTRVHAF
                     TLYVVGEGIEKKTGDFAAEVAAQVAAAKG"
     gene            complement(3796..>4269)
                     /gene="rpsB"
                     /locus_tag="VF308_08295"
     CDS             complement(3796..>4269)
                     /gene="rpsB"
                     /locus_tag="VF308_08295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005796060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEX7436692.1"
                     /translation="DQRWLGGMMTNFKTVKGSLKRLKDMKAQIEAGTEIRIKKEALMF
                     QRELAKLEKDIGGIQDMNALPDAMFVIDVGFHKIAVAEAKKLGIPIIAIVDSNHSPIG
                     IDYVIPGNDDSSKAVALYAKAVADAVLEGKANAANEVVQGAAVGDEFVEVDEASA"
BASE COUNT          611 a         1450 c         1462 g          746 t
ORIGIN      
        1 cgtagccgaa gcggttggcc gcgatcgaga agaagctctc ggtgccgatc gagccggcgg
       61 cgtcgatcac gagccacgcc gcggcgacga gcagggcgcc ggccatgccg ctccaaacgc
      121 cctcccagct cttgcccggg ctgatcgccg gcgcgagctt gcgcttgccg agcgcgcggc
      181 cgccgaaata ggcgaacacg tcggcgctcc agacaaggag gaacaccgag aggatgaagt
      241 tgaggccgat cgccttggcg ttggcgagcg ccagccacgc ggtccagaga gcgaccaggc
      301 cgatcgccca gcgcaacgcg cgcggcaggc gcggccagcc ggcgacgccg gcgcgaagca
      361 cccacgtgcc gccgagcacc caggcgagga aggcgagcca ccaggcgagg cgaggcgccg
      421 tcgtcgtcca gccggcgtag agcgcgagcg cgcaggcggc gccgagggcg atgccgagcg
      481 gcgccgccag cgcgccggcg tcgttgagcc gcgcccactc ccagccggcg agcgccatcg
      541 ccgccatcgt caggaccgcg aacggccacg cttgcttcac gatcagcgcc gggagcaaca
      601 gggccagcag caccatcgcg gtcagaatgc gctgcttgag cacgagcggg ccctagcttc
      661 cgctcgcgac gagctcggcg gcggcgggga cggcgccgaa tcgtcgttct cgccgcgcgt
      721 actgcgccag tgcggagtcg agctcttcgg taccgaactc gggccagagg cactcggtga
      781 agacgagctc cgagtacgcg gcctgccaga gcaggaagtt gctgatccgc acttcgccgc
      841 cggtgcggat gaagaggtcg ggatccgggg cgtagctgag cgccatgtag ctgttgaggg
      901 tcgcctcgtc gaggtcctcg ggcttgacgc ccgcgaccat cgcctgccgg cacgcctgga
      961 cgatgtccca gcggccgccg tagttgaacg cgaccgagag gtggatcttg gtgttgtggc
     1021 gcgtgctgtc ctcggcgtgc tgccaggcct ggcgcagctt gtccgagacc tgggcgcggt
     1081 cgccgacgat gcgcacgcga acgccgtcgc cggcgagctt ggcgaggtac ttcgagacgg
     1141 cgacgaggac cagccccatc aggctcgaga cttcctcgct cggccgcttc cagttctcgg
     1201 aggagaacgc gaacaccgtc aggtattcga tgccgcggtc ggcgcacgca tggacggtgc
     1261 gcacgagcgc gtcgacgccc tgcttgtggc cgaagaagcg cggcatgtgc cgcttcttgg
     1321 cccagcggcc gttgccgtcc atgacgatgg cgacgtggcg gggcaccgcc ggcgccgagg
     1381 cgggacgctc cgccatcaga ccgccatgat ctcggcttcc ttggccgaga tgagccgatc
     1441 gatctcggcg acggtccggt cggtgagctt ctgcagctcg tcgagcgaac ggcgctcctc
     1501 gtcctcggag atcgtcttgt ccttggcgag gcgccgggcg tgatcgttgg cgtcgcggcg
     1561 caggttgcgg acggcgatct tggcgtcctc accctcgtgg cgggcgacct tggtgagctc
     1621 cttgcggcgc tcctcggtca aggccggcat cggcacgcgc agcaggtcgc cctgcgccga
     1681 aggattcaag ccgagatccg actcgcggat ggccttctcg atcttcgcgc ccattccctt
     1741 ttcccagggc tggacgctga tcgttcgcgc gtcgagcagg gtcacgttgg cgacttggct
     1801 gatcggcacc ggcgagccgt agtagtcgac gtgcacctgg tcgaggatcc cggtgtgggc
     1861 gcggccggtg cggatcttct gcaagtcgtt cttgagcgac tcgatcgacc ggcccatctt
     1921 ctgctcggcg gtcttcttga tctctgcaat cgtcatgtga agcagtcctt agacgtggac
     1981 gagcgtgccc tcgtcctctc cctgaacgac gcgcttgagc gcgcccgact tgaagatgct
     2041 gaagacgcgg atcggcagct tctggtcgcg acagagcgcg aaagcggtcg cgtcgagcac
     2101 ctgcaggttc ttgatgatcg cctcgtcgaa gctgatccgg gcgtagcgcg tcgcgcccgg
     2161 gtccttgttc gggtcggagc tgtagatgcc gtcgaccttg gtggccttca gcacgatctg
     2221 cgcgccgatc tcggcgccgc gcagggccgc cgcggtgtcg gtggtgaaga acgggttgcc
     2281 ggtgccggcg gcgaagatca cgaccttgcc ttcctcgagg tactgcagcg ccttcggccg
     2341 cacgtagggc tcgacgacct gctcgatcgc gatcgccgac atcacccgcg ccgtgatgcc
     2401 ctcctggcgc atcgtgtcgg cgagcgcgag cgcgttcatc accgtcgcca gcatgcccat
     2461 gtagtctgcg gtggcccggt ccatgccgac cgagccgccg gcgacgccgc ggaagatgtt
     2521 gccgccgccg atcacgaccg cgacctcgca accgagctgc gtcacttcct gcacctcgcg
     2581 cacgatgcga acgatcgtcg cgcgattgat gccgtacgca tcctccccca tcaaggcttc
     2641 gccggaaagc ttgagcagga tgcgcttgta cgcggccatg cagtcgactc cttcgtgatg
     2701 gtcttcgagc cgggctgaag tctagccgcc gacggtgaag acgccggacg ccgggtcagc
     2761 ccttggcggc ggcgacctgc gccgcgacct cggccgcgaa gtcgccggtc ttcttctcga
     2821 tcccttcgcc cacgacgtac agcgtgaacg catggactcg ggtcgacttc tccttgagca
     2881 tctgctcgac cgtctgcttg tcgttcttga cgaaggcctg gttgtgcagg ctgacttcct
     2941 tcaggaactt cgcgaccgat ccctcgatgc gccgggcgac gatctcgggc gactgcaccg
     3001 ccttgccctc ggccttcgcc ttctcggcgt cctcggcggc gcgcagggtc gcgaccgagc
     3061 gctcggcggc gatcagcgat tcggagacgt cggccgtggt gagcgccttc ggcttcatcg
     3121 ccgcgacgtg catcgcgacg tccttggccg cggtctcgtc gccctcgaac tcgaccagca
     3181 cgccgatccg cgttccgtgc aggtagctgg cgagcttgcc accgccggcg tagcgctgga
     3241 agcgacggat cgacatgttc tcgccgatct tgccgatcag ccccttgcgg acgtcctcga
     3301 cggtcggccc gaagccgtcc tggccgagcg gcagcgccgc cagcgccgcg acgtcggccg
     3361 ggttcttcgc cgcgaccagc ccggcgagcg ccttggcgaa ggcgaggaac gagtcgttct
     3421 tggtgacgaa gtcggtctcg cagttcacct cgatgagggc accggtcgtg ccttcgaccg
     3481 acgcggcgac gacgccttcg gcggcgatcc gcgacgccgc cttgccggcc ttgctgccga
     3541 gcttgacgcg cagcagctcc tcggccttgt ccatgtcgcc gtcggcctcg gtcagggcct
     3601 tcttgcactc catcatcggt gcgtcggtct tggcgcgcaa cgcgccgacc atgcttgcgg
     3661 tgattgccgc catcgtcttg ctccttcaga ccggacgcgc cgtcgaggac ggggcgccgg
     3721 gttcgatgtt cagttgtgaa aaaggggctg aatcagcccc tgggtccgct cgccggaggc
     3781 gagccggggc gccgatcagg ccgaggcttc gtcgacttcg acgaattcgt cgccgacggc
     3841 ggcgccctgc accacttcgt tggcggcgtt ggccttgcct tcgaggacgg cgtcggcgac
     3901 ggccttggcg tacagcgcga cggccttcga cgagtcgtcg ttgccgggaa tcacgtagtc
     3961 gatgccgatc ggcgagtggt tcgaatcgac gatcgcgatg atcgggatgc cgagcttctt
     4021 cgcctcggcg acggcgatct tgtggaagcc gacgtcgatc acgaacatcg cgtccggcag
     4081 ggcgttcatg tcctggatgc cgccgatgtc cttctcgagc ttggcgagct cgcgctggaa
     4141 catcagcgct tccttcttga tccggatctc ggtgccggcc tcgatctgcg ccttcatgtc
     4201 cttcaggcgc ttgagcgagc ccttgacggt cttgaagttg gtcatcatgc cgccgagcca
     4261 gcgctggtc
//
LOCUS       DASVHM010000438         3457 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_393401, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000438 DASVHM010000000
VERSION     DASVHM010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3457
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393401"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..278)
                     /locus_tag="VF308_08300"
     CDS             complement(<1..278)
                     /locus_tag="VF308_08300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019654536.1"
                     /note="membrane component of a putative sugar ABC
                     transporter system; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease YjfF"
                     /protein_id="HEX7436693.1"
                     /translation="MSPAFAAALPRRIDARYVPLLGTIAVFVLTAGYGSLAYPSFFAA
                     QVFLNLLIDNAFLCIVGVGMTFVILSGGIDLSVGAVIALTTMISAALV"
     gene            complement(275..1321)
                     /locus_tag="VF308_08305"
     CDS             complement(275..1321)
                     /locus_tag="VF308_08305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006713072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436694.1"
                     /translation="MRSDWRQRVRGHRLLWPAVALVLLLAVNAIFNPGFWQLQWRDGH
                     LYGSVIDILNRASPLALVALGMTLVIATRGIDISVGAVVAIAAAMAALMIGGDLVVKD
                     GVQTHVSRLPMGVAIVAALAVAALCGLWNGLLVAKVGMQPIIATLILMVAGRGIAQLL
                     TGGQIITIYYAPFFFLGNGFLLGVPFAVFIAAAVWGALHLLMTRTALGMFIQAIGINP
                     EASRVAGLPQRLITVSVYVFCGVCAGAAGLVISSNVKSADGNNAGMLMELDAILAVTL
                     GGTLLSGGRFSLAGSVLGALIIQTLTSTIYSIGVPPEINMVVKAGVVFFVMLLQSAEF
                     RRTARGWIWHEAAA"
     gene            complement(1321..2838)
                     /locus_tag="VF308_08310"
     CDS             complement(1321..2838)
                     /locus_tag="VF308_08310"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010461384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HEX7436695.1"
                     /translation="MSAAPVLEARGLIRRFTGVLALSRVDFRLFGGEVHALMGQNGAG
                     KSTLIKVLTGVHPADDGELRLGGETVRPGSPAAAQRLGISTVYQEVNLCPNLSVAENI
                     FAGRYPRRGAAALWRIDWARMNDGARALLARLHVDIDVTRLLSSYSVAVQQMVAIARA
                     LGVQARVLILDEPTSSLDEDEVEQLFAVLRRLRDEGLAILFVTHFLEQMYAISDRITV
                     LRNGELVGEYLKAELPAPALITAMVGRELSVAAGRHGVAGATVDETGPALLEAKGVGR
                     RGHLRPVDLSLRRGEIVGIGGLLGSGRTELARLLFGLDKRDSGELEMAGSAVRIDSPA
                     QAIRQGLAMCPEERKFDGIVAELSVRENIVLALQARLGLYRFLSLARQEQIAGRFVEA
                     LGIRTTDLDTPIALLSGGNQQKVVLARWLATEPRLLILDEPTRGIDVAAKQEIMNQIL
                     ALARAGMSVLFISSEMSEVVRVSDRIVVLRDRRKVGELPRDSSEQAVYHLIAAGA"
     gene            complement(2841..>3457)
                     /locus_tag="VF308_08315"
     CDS             complement(2841..>3457)
                     /locus_tag="VF308_08315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017451266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7436696.1"
                     /translation="DRAVDEKDDSLWVTFMGSDFVEEGRRAGRWLVEKTKGTSGDVNI
                     VELQGTVGSAPAIDRKKGFEEIIKTNPRYKIIRSQTGDFTRAKGKEVMEAFLKAEGKK
                     INVLYAHNDDMAIGAIQAIEEAGMKPAKDIIIISVDAVKGAFEAMIAGKLNVSVECSP
                     LLGPQLMQAVKDLKAGKTLPKRIVTQEGVFPMEVAAKEFPNRKY"
BASE COUNT          557 a         1199 c         1189 g          512 t
ORIGIN      
        1 tcgaccagcg ccgccgagat catcgtcgtc agcgcgatca ctgcgccgac cgacaggtcg
       61 atgccgcccg acaggatgac gaaggtcatg ccgacgccga cgatgcagag gaaggcgttg
      121 tcgatcagca ggttcaggaa cacctgggcc gcgaagaagc tggggtaggc cagcgagccg
      181 tagccggcgg tgagcacgaa cacggcgatc gtgccgagca gcggcacgta gcgcgcgtcg
      241 atgcggcgcg gcaaggctgc ggcgaaggca gggctcatgc cgcggcctcg tgccagatcc
      301 agccgcgcgc cgtgcgccgg aactcggccg actgcagcag catcacgaag aagacgacgc
      361 cggccttgac gaccatgttg atctcgggcg gcacgccgat cgaatagatc gtcgatgtca
      421 gcgtctggat gatcagcgcc ccgagcacgc tgccggccag gctgaagcgc ccgccgctga
      481 gcagcgtgcc gccgagcgtg acggcgagga tcgcgtcgag ctccatcagc atgccggcgt
      541 tgttgccgtc ggcgctcttg acgttcgagc tgatcaccag cccggccgcg ccggcgcaga
      601 cgccgcagaa cacgtagacc gagaccgtga tcagtcgctg cggcaagccg gccacccgcg
      661 acgcctccgg gttgatgccg atcgcctgga tgaacatgcc gagggcggtg cgggtcatca
      721 acaggtgcag cgcgccccac accgcggcgg cgatgaagac ggcgaacggc actccgagca
      781 ggaagccgtt gccgagaaag aagaacggcg cgtaatagat cgtgatgatc tggccgccgg
      841 tcagcagctg cgcgatgccg cggccggcga ccatcaggat cagcgtcgcg atgatcggct
      901 gcatgccgac cttggccacc agcaggccgt tccagaggcc gcacagcgcg gcgacggcca
      961 gcgcggcgac gatcgccacg cccatcggca agcggctgac atgggtctgc acgccgtcct
     1021 tcaccacgag gtcgccgccg atcatcagcg ccgccatcgc cgccgcgatc gcgaccaccg
     1081 cgccgaccga gatatcgatg ccgcgcgtcg cgatcaccag cgtcatgccg agcgccacca
     1141 gcgccagcgg cgacgcgcgg ttgaggatgt cgatgacgct gccgtagagg tggccgtcgc
     1201 gccactgcag ctgccagaag cccggattga agatcgcgtt gacggcgagc aggagcacga
     1261 gggcgacggc cggccagagc aggcgatggc cgcggacgcg ctggcgccag tcgctgcgca
     1321 tcacgccccc gccgcgatca ggtgatagac ggcctgctcc gagctgtcgc gcggcagctc
     1381 gccgaccttg cgacgatcgc gcaggacgac gatgcggtcc gagacgcgca cgacctcgct
     1441 catctccgag gagatgaaca gcaccgacat tcccgcgcgc gccagcgcca ggatctgatt
     1501 catgatctcc tgcttcgcgg cgacgtcgat gccgcgggtc ggctcgtcga ggatcaggag
     1561 gcgcggctcg gtcgcgagcc agcgcgcgag cacgaccttt tgctggttgc cgcccgacag
     1621 gagggcgatc ggcgtgtcga ggtcggtggt gcggatgccg agcgcctcga cgaatcggcc
     1681 ggcgatctgc tcttgccggg ccagcgacag gaaacggtag aggccgagcc gcgcctgcaa
     1741 cgccagcacg atgttttcgc gcaccgacag ctcggcgacg atgccgtcga acttgcgctc
     1801 ttcggggcac atcgccaggc cctggcggat ggcctgggcg gggctgtcga tgcgcacggc
     1861 cgagccggcc atctcgagct cgccgctgtc gcgcttgtcg aggccgaaga gcagccgcgc
     1921 gagctcggtg cgacccgatc ccaacaggcc gccgatgccg acgatctcgc cgcgccgcag
     1981 gctcaggtcg acgggccgca gatggccgcg ccggcccacg cccttcgctt cgagcagtgc
     2041 cggcccggtc tcgtcgacgg tcgcgccggc gactccgtgt cgtccggcgg cgacgctcag
     2101 ctcgcgcccg accatcgccg tgatcagcgc cggtgccggc agctcggcct tcaggtattc
     2161 gccgacgagc tcgccgttgc gcagcaccgt gatgcggtcg gagatggcat acatctgctc
     2221 gaggaaatgg gtgacgaaga gaatcgccag gccttcgtcg cgcaggcgcc gcagcacggc
     2281 gaagagctgc tcgacctcgt cttcgtcgag gctcgaggtc ggctcgtcga ggatcagcac
     2341 gcgcgcctgc acgccgagcg cgcgcgcgat cgccaccatc tgctgcaccg cgaccgaata
     2401 gctcgacagc agccgcgtga cgtcgatgtc gacgtgcagg cgcgccagca aggcacgcgc
     2461 gccgtcgttc atgcgcgccc agtcgatgcg ccagagcgcg gcggcgccgc ggcgcgggta
     2521 gcgtccggcg aagatgttct ccgccaccga caggttcggg cacagattga cctcctggta
     2581 caccgtgctg atgcccaggc gctgcgccgc ggcgggcgag ccgggacgca ccgtctcgcc
     2641 gccgagccgc aactcgccgt cgtcggccgg atggaccccc gtcagcactt tgatcagggt
     2701 cgacttgccg gcgccgttct gccccatcag cgcgtgcact tcgccgccga acaggcgaaa
     2761 gtcgacgcgc gacagggcga gcacgcccgt gaagcggcgg atcagcccgc gcgcctcgag
     2821 gaccggcgcc gcggacaagc tcagtacttc cggttcggga attccttggc cgcgacctcc
     2881 atcgggaaca cgccttcctg cgtgacgatg cgcttgggca gggtcttgcc ggccttcagg
     2941 tccttgacgg cctgcatcag ctgcggcccg agcagcgggc tgcactcgac gctgacgttg
     3001 agcttgccgg cgatcatcgc ctcgaaggcg cccttcacgg cgtcgaccga gatgatgatg
     3061 atgtccttcg cgggcttcat gccggcctct tcgatggcct ggatcgcgcc gatcgccatg
     3121 tcgtcgttgt gcgcgtagag cacgttgatc ttcttgccct cggccttcag gaaggcttcc
     3181 atcacctcct tgcccttggc gcgggtgaag tcaccggtct gcgagcggat gatcttgtag
     3241 cgcgggttgg tcttgatgat ctcctcgaag cccttcttgc ggtcgatcgc cggcgccgag
     3301 ccgacggtgc cctggagctc gacgatgttc acgtcgccgc tcgtgccctt ggtcttctcg
     3361 accagccagc ggccggcgcg gcggccttcc tcgacgaagt ccgagcccat gaaggtgacc
     3421 cacaggctgt cgtccttctc gtcgaccgcg cggtcgg
//
LOCUS       DASVHM010000439         1923 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_104532, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000439 DASVHM010000000
VERSION     DASVHM010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1923
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104532"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..230
                     /locus_tag="VF308_08320"
     CDS             <1..230
                     /locus_tag="VF308_08320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007867632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cation transporter dimerization
                     domain-containing protein"
                     /protein_id="HEX7436697.1"
                     /translation="HSTIRFDHVVTRRAGQRRFVDLHMHMPGGWSLGRAAALRAEVEQ
                     ALMSDVRGLRASIQLLPTDVEAHFNDADSLG"
     gene            227..667
                     /gene="dtd"
                     /locus_tag="VF308_08325"
     CDS             227..667
                     /gene="dtd"
                     /locus_tag="VF308_08325"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013900023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HEX7436698.1"
                     /translation="MIALLQRVARAHVEVGGETVGAIGHGLLVLVCAEPRDTEELADR
                     LIAKILNLRIFGDAAGKMNRSVVDVGGGLLIVSQFTLAADVSGGNRPSFTAAAPAEQG
                     RRLYERVVATAQLRHAPVAAGVFGADMQVHLVNDGPATIPITLR"
     gene            complement(688..1656)
                     /locus_tag="VF308_08330"
     CDS             complement(688..1656)
                     /locus_tag="VF308_08330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
                     /protein_id="HEX7436699.1"
                     /translation="MKRVLLAVAVLLCATARAEYPDKPVTIVVPFAAGGPTDKVSRDL
                     AEAMRAPLGGQSIIIENVGGAGGTLAASKLAPAPNDGYTLLLHHIGISTAPALYRRLP
                     YKTLDDFEYLGMINEVPMTLIGRPTLPANNFAELTKWIEANKGKINLANAGLGAASHL
                     CGLLFQSSVKVEMQTVPYKGHRAGVNDLLGGQVDLMCDQTTNTSGQIEAGKVKAYGVT
                     TAKRLTTPALRNLPTLDEAGLKGFNVAVWHGLYAPKGTPKATTDKINAALRVALKDPD
                     FVKREEGLGAVIITDGRVGGVEHKKFVEAEIAKWGAVIKAAGQYAD"
BASE COUNT          270 a          639 c          666 g          348 t
ORIGIN      
        1 ggcacagcac gatccgcttc gaccatgtgg tgacgcgccg tgccgggcag cgtcgcttcg
       61 tcgacctgca catgcacatg ccgggcggct ggtcgctcgg acgcgccgcc gcgctgcgcg
      121 ccgaggtcga gcaggcgctg atgagcgatg tgcgcggatt gcgcgcctcg atccagcttc
      181 tgccgaccga tgtcgaggcg catttcaacg acgcggattc actcgggtga tcgcgttgct
      241 gcagcgcgtg gcccgcgcgc atgtcgaggt cggcggcgaa acggtcggcg ccatcggcca
      301 tggactgctc gtgctggtgt gcgccgagcc gcgcgacacc gaggagctcg ccgaccggct
      361 gatcgcgaag atcctgaatc tgcgcatctt cggcgatgcg gccggcaaga tgaaccgcag
      421 cgtcgtcgac gtgggcggcg gcttactgat cgtcagccag ttcacccttg ccgccgacgt
      481 gtcgggcggc aaccgcccga gcttcacggc cgcggctccc gccgaacagg gccgccgcct
      541 ctacgagcgc gtcgtcgcca cggcgcagct gaggcatgcg ccggtcgcgg ccggcgtttt
      601 cggcgccgac atgcaggtgc acctcgtcaa cgacggaccg gcgacgatcc cgatcacgct
      661 gcgctagggc ctgtgaacag gccctagtca atctgcatac tggcccgcgg ccttgatgac
      721 cgcgccccac ttggcgattt cggcttcgac gaacttcttg tgttcgacgc cgccgacacg
      781 tccgtcggtg atgatcaccg cgccgagccc ttcttcgcgc ttgacgaagt ccgggtcctt
      841 cagcgcgacg cgcagcgccg cgttgatctt gtcggtcgtg gccttcggcg ttcccttggg
      901 cgcatagagc ccgtgccaga ccgcgacgtt gaagcccttc agacccgctt cgtcgagcgt
      961 cggcaggttc ctcagcgccg gcgtggtcag gcgctttgcc gtggtgaccc cataggcctt
     1021 gaccttgccg gcttcgatct gtccgctcgt gttcgtggtc tggtcgcaca tcaggtcgac
     1081 ctgtccgccg agcaggtcgt tcacgccggc gcggtgcccc ttgtacggca cggtctgcat
     1141 ctcgaccttg accgagctct ggaagagcag gccgcacagg tgcgaggcgg cgccgagacc
     1201 ggcgttcgcg aggttgatct tgcccttgtt ggcctcgatc cacttcgtca gttcggcgaa
     1261 gttgttggcc ggcagggtcg gccggccgat cagcgtcatc ggcacttcgt tgatcatgcc
     1321 gaggtactcg aagtcgtcga gtgtcttgta cggcagcctg cggtagagcg ccggcgcggt
     1381 gctgatgccg atgtgatgca gcagcagcgt gtagccgtcg ttcggcgcag gggcgagttt
     1441 cgacgcggcc agcgtgccgc cggcgccgcc gacgttttcg atgatgatcg actgcccgcc
     1501 gaggggcgcg cgcatcgctt cggcgagatc gcgtgacacc ttgtcggtgg gcccacccgc
     1561 ggcgaacggt acgacgatcg tgaccggctt gtcggggtac tcggcccggg cggtggcgca
     1621 gagcaggacg gcgacggcaa gcagcacgcg tttcatcgaa ggtcctctgg aacagtggga
     1681 tgaaagattg tcggcatcgg ccggcggccc gcgccatggc gaaaaccatg caatcgccgc
     1741 gctgaaagga tcaggcgagg tgctcggcca gcacacgcgc ggcgtgttgc gccgcgcgcc
     1801 ctgcgccgtc ggcgatctga tgccggcagc tcgtgccgtc ggcgacgatc agcgcctgcg
     1861 gcgccttcct gatcgcgggc agcaggctca gctcggccat ctgcatcgag atctcgtggt
     1921 gtt
//
LOCUS       DASVHM010000440         1638 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1114885, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000440 DASVHM010000000
VERSION     DASVHM010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1114885"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..399
                     /locus_tag="VF308_08335"
     CDS             <1..399
                     /locus_tag="VF308_08335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436700.1"
                     /translation="TQAPLEDTAGLVALAHCLARHAAEADPEPDPAAEVLEEGVFRAA
                     RFGVRARLPDADGQLRPVSELLDDALALARGYAPELHCADELDRLPALLARDGGAGRQ
                     RAAYEIAGMDGLLRELTKFTGAGTATPAVR"
     gene            544..1008
                     /locus_tag="VF308_08340"
     CDS             544..1008
                     /locus_tag="VF308_08340"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX7436701.1"
                     /translation="MKHAATQVARARGSAKTSILESRNPSGKEQHLSRIQQVIETLET
                     ERAEVQKHLTWLEQQINEFHAHNGDSAAVTPARSVRRATARRASKRRATARSRHLDAK
                     TRIIDFLAQHPGSTAGDVAKGLNLNPGSASTRLSQLAKAGEIKKASRGYTTK"
     gene            1425..>1638
                     /locus_tag="VF308_08345"
     CDS             1425..>1638
                     /locus_tag="VF308_08345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436702.1"
                     /translation="MCRLFGMSAGSMRARATFWLLDAPDSLATQSHRDPDGTGLGWFD
                     GKRAPHVSKQPIAAYDDAQFGREAREV"
BASE COUNT          283 a          547 c          565 g          243 t
ORIGIN      
        1 acccaggcgc cgctcgagga caccgccggt ctggtcgcgc tcgcgcactg cctggcgcgc
       61 cacgctgccg aggccgatcc cgagccggat ccggcggccg aggtgctcga ggagggcgtg
      121 ttccgagcgg cgcgcttcgg cgtccgcgcc cggctgcccg acgccgacgg tcagctgcgg
      181 cctgtcagcg agctgctcga cgacgcactg gcgctcgcgc gcggctacgc ccccgagctg
      241 cactgcgccg atgagctcga ccggctgccg gcgctcttgg cgcgcgacgg cggcgccggg
      301 cgccagcgcg ccgcgtacga gatcgcgggg atggacgggt tgcttcgcga gctgacgaag
      361 ttcacaggcg cgggtacggc gacgccggcc gtgcgctgag cgccagcgcg cggggcattt
      421 cccatgcgcg gacgcgcggg cggtcaccgc ggtccttctc gagctgaccc attcggcgta
      481 gcgctggcaa cctatatcag cgcgtacaca tcgaggggtt gacggtagga agaaggcggc
      541 ggcatgaagc acgccgccac tcaggtcgcg cgagcgcgcg ggtctgctaa gacgtcgatt
      601 ctcgaatctc gcaatccctc tggaaaggag cagcacttgt ctcgcattca gcaggtcata
      661 gagacgctcg agaccgagcg cgctgaagtc cagaagcatc tgacttggct cgagcaacag
      721 atcaacgagt tccacgctca caatggcgat tcggcggcgg tcactccggc tcgctcggtg
      781 cgccgcgcga cggcgaggcg cgcgagcaag cggcgtgcaa ccgcgcgtag ccgtcatctc
      841 gacgccaaga cgcgcatcat cgacttcctc gcccagcacc ctggcagcac cgctggtgat
      901 gtcgctaagg gcctgaacct caatcccggc agtgcctcaa cccgcctgag ccagctcgcg
      961 aaggccggcg agatcaaaaa ggcatcgcgc ggctacacga ccaagtagtg gcacgacctc
     1021 gcgggatcga aggtggaccg ttgcgcgagt gcgacgaggc tgcggtccga cacagctacg
     1081 ccgacctcgg tggtgtgggc ctgcactatg tcgaggcagg cgatacggtc aattgggtcc
     1141 gcagggccct ggccaactcg gtaagagagc gcacgtcgag cttgcgacgt tgaccgtcag
     1201 gtcatgacga cttcgcgcga aagcaggcgt cagcccaggc gctgagctca agcccgctca
     1261 ggacgaacag cgacagtctg gccggggacc gagcgcatgg tcgctttgtc cgacaaggcg
     1321 gcagccagag gggcgttcgc aggctgccga gaacaccgag ttgctcgttg tcgccgagag
     1381 atctaacctt ctcacatggc tcgaccggca tcgcctgcct aaccatgtgt cgcctgttcg
     1441 gcatgagtgc cgggagcatg cgagctcggg caacgttctg gctgctcgac gcacccgaca
     1501 gcctcgcgac tcagagtcac cgcgacccgg acgggaccgg tctgggctgg tttgacggta
     1561 agagggctcc tcacgtcagc aagcagccga tcgccgctta cgacgacgcg cagttcgggc
     1621 gcgaggcgcg cgaggtct
//
LOCUS       DASVHM010000441         1511 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_971238, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000441 DASVHM010000000
VERSION     DASVHM010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_971238"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..462
                     /locus_tag="VF308_08350"
     CDS             <1..462
                     /locus_tag="VF308_08350"
                     /EC_number="4.2.2.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEX7436703.1"
                     /translation="FNTIDERLAHLRWLGDMSERLKKRTAEHITRVEFLETLWYESTR
                     AGLEPSLLLGLVQVESGFRKYAISLAGARGYTQVMPFWARLIGDGNSSRLFHMQTNLR
                     FGCVILRHYLDLEHGDMFMALGRYNGSRGHPEYPNAVFGARKAWEPRPTSS"
     gene            complement(459..1040)
                     /locus_tag="VF308_08355"
     CDS             complement(459..1040)
                     /locus_tag="VF308_08355"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007580710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0106141 - flavin prenyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEX7436704.1"
                     /translation="MKAVSAARARVVVGITGATGAVYAIRLLERLKATGHETHLVASP
                     AAILNVHHELGLDRKALEELADVAYNPSEVGAAIASGSFATAGMVIAPCSMKTLAAVA
                     QGFSDNLLSRAADVTLKERRRLILMVRETPFNLAHLRNMIAVTEMGGIVFPPLPAFYH
                     RPQTIADLVDETVERALALLGIGAAAPQAWRGL"
     gene            complement(1037..1354)
                     /gene="grxD"
                     /locus_tag="VF308_08360"
     CDS             complement(1037..1354)
                     /gene="grxD"
                     /locus_tag="VF308_08360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020423715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HEX7436705.1"
                     /translation="MNDVQQRIDDLVKNNRVVLFMKGTAQFPMCGFSGRAVQILKACA
                     VEDLTTVNVLDDEGIRQGIKAYANWPTIPQLYVNGEFVGGSDIMTEMYEAGELQQALG
                     ATA"
BASE COUNT          252 a          486 c          513 g          260 t
ORIGIN      
        1 ttcaacacga tcgacgagcg cctcgcccac ttgcgctggc tcggcgacat gagcgagcgg
       61 ctgaagaagc gcacggccga gcacatcacc cgcgtcgagt tcctcgagac gctctggtac
      121 gaaagcaccc gcgccgggct cgagccttcg ttgctgctcg gcttggtgca ggtcgagagc
      181 ggctttcgca agtacgcgat cagcctcgcc ggtgcgcgcg gctatacgca ggtgatgcct
      241 ttctgggcgc gtctcatcgg cgacggcaat tcgagccggc tctttcacat gcagaccaat
      301 ttgcgcttcg gttgcgtgat cctgcgccac tacctcgacc tggaacatgg cgacatgttc
      361 atggcgctcg gacgctacaa cggcagtcgc ggccatcccg aatatcccaa cgcggtattc
      421 ggtgcgcgca aggcctggga accccggccg actagctcct agaggccgcg ccacgcctgc
      481 ggcgccgcag cgccgatgcc gagcagggcg agcgcgcgtt cgacggtttc gtcgacgagg
      541 tcggcgatgg tttgcgggcg gtgatagaac gccggcagcg gcgggaagac gatcccgccc
      601 atttcggtga ccgcgatcat gttgcgcagg tgggctaggt tgaagggcgt ctcgcgcacc
      661 atcaggatca ggcgcctgcg ctccttcagg gtcacgtcgg cggcgcggga caggaggttg
      721 tccgaaaagc cctgcgccac cgccgcgagc gtcttcatcg agcacggcgc gatcaccatg
      781 ccggcggtcg cgaacgaacc gctggcgatg gccgcgccca cctcggaagg gttgtaggcc
      841 acgtccgcga gctcctcgag cgccttgcgg tcgaggccca gttcatgatg gacattgagg
      901 atggcggcgg ggctcgcgac gagatgcgtc tcgtgtcccg tggccttgag ccgctccagc
      961 agccggatag catagaccgc gccggtggcg ccggtgatgc cgacgaccac gcgggcgcgc
     1021 gccgcgctca cggccttcag gcggtcgcgc cgagcgcctg ctgcaactcg cccgcctcgt
     1081 acatctccgt catgatgtcc gagccgccga cgaattcgcc gttgacgtag agctgcggga
     1141 tcgtcggcca gttcgcgtag gccttgatgc cctggcggat gccctcgtcg tcgagcacgt
     1201 tgacggtggt caggtcttcg acggcgcagg ccttcaggat ctgcaccgcg cgtcccgaga
     1261 acccacacat cgggaactgg gcggttccct tcatgaagag cacgacccgg ttgttcttga
     1321 ccagatcgtc gatgcgttgt tggacgtcgt tcatggggta gagccggaga attgatgaat
     1381 agtcgaggtt atacggcaaa cggcggccgg ctcgcgccgg tcgcccgcaa ggccttgccg
     1441 gggcacgggt tcagaacgaa tacgagacgc cgagctgaaa caccggcgac cagcgcatgt
     1501 cgtgaagggt g
//
LOCUS       DASVHM010000442         2688 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_825013, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000442 DASVHM010000000
VERSION     DASVHM010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2688
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_825013"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1726
                     /locus_tag="VF308_08365"
     CDS             <1..1726
                     /locus_tag="VF308_08365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007856889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEX7436706.1"
                     /translation="MQPAASSPFVQRWRHLDKSAWIWLLAIAVLLILVINPLFRLLVV
                     SFEQPDTGAFTLANYAAAYSRSRYVDALVNSLILGAAAATLCLIFGTPLAWALSRTDM
                     PAKGLIWVSILGTFIIPPYLGAVGWILLAGPNAGWLNRAAVALTGADKGPFNIYTMPG
                     LVLVTACYSFPYVFMFTKSALDLISSEMEDAANILGAGNLRTTLSITLPLALPAMLGA
                     FILVFLEAIALFGSPALIALPGRFHVVTTQLWQFFEYPPKVGVAAAYAMPLLAITVLL
                     FWIQRRITSRKGYISLTGKGGERRPIELGAWKWPLLAYCLFVCTLSFFMPMVVICQAA
                     LAKAWGRGFSLDNLTLRNLYFTLFENTLTRNAVVNTFLYAGSAAVIAVLLALSVAYIV
                     NRQLVGKVLGNVLSFVTMAPFVIPGIVLAIGFYAAYTHPPLLLYGTAWILILAFATRF
                     LPIAYANSSAAIRSVNPELEDAVRILGGTRLTAIRRVVLPLLKRSLAGAFILVFIPGT
                     RELSSAIFLYSINTQVLSVLLFDKSDEGNFEMLAAIGLILVVITVILILIGFRLLGRD
                     FMLRRTAA"
     gene            1723..>2688
                     /locus_tag="VF308_08370"
     CDS             1723..>2688
                     /locus_tag="VF308_08370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436707.1"
                     /translation="MSRLVLRNVGRTFGGVTAVDDFNLALEEGELVSLLGPSGCGKTT
                     TLRMIAGFMAPTAGTIEVDGQVISSPASVLPPEKRGMSMIFQSYAIWPNMTVAENVGF
                     GLKVRKLGGDEIRRRVDEILEVVQMSALRDRYPAELSGGQQQRVALARSIVVKPALLL
                     LDEPLSNLDANLREEMRFEIRRLHDEFKIAMVYVTHDQAEAMVTSDRIVVMNKGRIEQ
                     IDAPYALYARPRTRFVAGFIGRTNFLEGKANAVSVDFGAFSVRKDALLSEGALPDRVL
                     VSLRPQSIHLVRHEQAIAEGHCRARGRVERRAYLGEYWDYHVALEG"
BASE COUNT          408 a          953 c          820 g          507 t
ORIGIN      
        1 gatgcagccc gcggcatcgt cgccgttcgt tcagcgatgg cgccatctcg acaagtcggc
       61 ctggatctgg ctgctcgcca ttgcagtgct actcatcctg gtcatcaatc cgctgtttcg
      121 actgctcgtc gtcagcttcg agcagcccga caccggcgcc ttcaccctcg ccaactacgc
      181 tgcggcgtac agccggtcgc gctacgtcga cgcgctcgtc aattcgctca tcctcggagc
      241 ggccgcggcg acgctctgcc tgatcttcgg tacgccgctg gcatgggcgc tctcgcgcac
      301 cgacatgcct gccaaaggcc tgatctgggt gtcgatcctg ggcaccttca tcatcccgcc
      361 gtacctcggc gcggtcggct ggatcctgct ggccgggccg aacgccggct ggctgaatcg
      421 ggcggccgtc gccctcacgg gcgccgacaa ggggccgttc aacatctaca ccatgcccgg
      481 gctggtgctg gtcaccgcct gctacagctt tccgtacgtg ttcatgttca ccaagtcggc
      541 gctcgatctt atttcctcgg agatggagga cgcggcgaac atcctcggcg ccggcaacct
      601 gcgcacgact ttgtcgatca ctctgccgct ggcgctgccg gcaatgctcg gcgccttcat
      661 cctggtgttc ctcgaagcga tcgcgctgtt cggatcgccg gcattgatcg ccctccccgg
      721 gcgctttcac gtcgtgacga cgcagctgtg gcagttcttc gagtacccgc ccaaggtcgg
      781 cgtcgccgcg gcgtatgcca tgcccctgct ggcgatcacc gtcttgctgt tctggatcca
      841 gcgacgcatc accagccgca agggctacat ctcgctgacc ggcaagggcg gcgaacgccg
      901 gccgatcgag ctcggcgctt ggaaatggcc gctgctcgcc tactgcctgt tcgtctgcac
      961 cctgtcgttc ttcatgccga tggtcgtgat ctgtcaggcg gccctggcca aggcctgggg
     1021 acgcggcttc agtctcgaca acctgacctt gcggaacctg tacttcaccc tgttcgagaa
     1081 caccctgacg cgcaacgccg tcgtcaacac cttcctgtat gccggctcgg ccgcggtcat
     1141 cgccgtgctg ctcgcgctca gcgtcgccta catcgtcaac cggcagctgg tcggaaaggt
     1201 cctcggcaac gtgctgtcgt tcgtgacgat ggcacccttc gtcatccccg gcatcgtcct
     1261 ggcaatcggc ttctatgcgg cctacacgca tcccccgctg ctgctctacg ggacggcgtg
     1321 gatcctgatc ctggcgttcg cgacccgctt cctgccgatc gcctacgcca acagcagcgc
     1381 ggcgattcgc agcgtcaatc ccgagctcga ggacgccgtg cgcatcctgg gcggcacccg
     1441 gctgacggcc atccgcaggg tggtgctgcc gctgctcaag cgcagcctgg ccggcgcgtt
     1501 catcctcgtc ttcatccccg gcacgcgcga gctgagctcg gcgatcttcc tctactcgat
     1561 caacacccag gtgctctcgg tgctgctgtt cgacaagagc gacgagggca acttcgagat
     1621 gctcgccgcc atcggcctca tcctcgtggt catcaccgtc atcctgatcc tgatcggctt
     1681 tcgcctgctc ggccgcgact tcatgctcag gagaaccgcg gcatgagcag gctcgtactg
     1741 cgcaacgtgg gccgcacctt cggcggcgtc acggcggtcg acgacttcaa cctcgccctc
     1801 gaggaaggcg agctggtctc gctgctcggg ccgtcgggat gcggcaagac gacgacgctc
     1861 agaatgatcg ccggcttcat ggcgccgacg gccggaacga tcgaggtcga cggacaggtg
     1921 atctcgtcac ccgcttcggt gctgccgccg gaaaagcgcg gcatgtcgat gatcttccag
     1981 agctacgcga tctggccgaa catgacggtc gccgaaaacg tcggcttcgg cctcaaggtg
     2041 cgcaagctcg gtggcgacga gattcggcgc cgcgtcgacg agatcctcga ggtcgtgcag
     2101 atgtctgccc tgcgcgaccg ctaccccgcc gagctgagcg gcgggcagca gcagcgcgtc
     2161 gccctcgccc gctcgatcgt cgtcaagccc gccttgctgc tgctcgacga acctctgtcg
     2221 aacctcgacg ccaacctgcg cgaggaaatg cgcttcgaga tccgccgcct gcacgacgag
     2281 ttcaagatcg cgatggtgta cgtgacgcac gatcaggccg aggccatggt cacctccgac
     2341 cgcatcgtcg tgatgaacaa gggccgcatc gagcagatcg acgcgcccta cgcgctctac
     2401 gcgcgaccgc gcacgcgctt cgtcgcgggc ttcatcggcc gcaccaattt cctcgagggg
     2461 aaggcgaatg ccgtgagcgt cgacttcggc gccttctcgg tccgcaagga cgccttgctc
     2521 agcgaaggcg ccctgcccga ccgcgtcctg gtgtcgctgc gtccgcaaag cattcacctt
     2581 gtcaggcatg agcaggcgat cgccgaaggg cattgccggg cgcgcgggcg cgtggagcgc
     2641 cgcgcctacc tcggcgagta ctgggactac cacgtcgccc tcgaaggc
//
LOCUS       DASVHM010000443         2837 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1185987, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000443 DASVHM010000000
VERSION     DASVHM010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1185987"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..175
                     /locus_tag="VF308_08375"
     CDS             <1..175
                     /locus_tag="VF308_08375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HEX7436708.1"
                     /translation="PVFQGDTLHVRTEVLSLRASASRPMAGIVEFRHIAYNQDDVEVA
                     RCTRSAFMHRQPA"
     gene            complement(608..2227)
                     /locus_tag="VF308_08380"
     CDS             complement(608..2227)
                     /locus_tag="VF308_08380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7436709.1"
                     /translation="MHDYELHERTMGRILAEKARRIPDKTFLIWEGHTWSYAELEEMT
                     NRYANGFSALGIAHGDHVAVMLPNCPEFFWVSWGLGKIGAVAVPINTAAKGELLRYFI
                     DQSDASCVVVDDEWVDRVAALAPQLAKVRRYVYRGERSLADCGLGATGAPVHALAELE
                     SDDDSQPPLDAVAYDDTHLIMYTSGTTGPSKGVMCPHSQGHAVGRALTIDFGYRPDDV
                     LYTCLPLFHGNAIWYTCYAALWADAAIALAPRFSATRFWDEIRTSGATQFNTLGAMTN
                     IIWKLPPGPHERDHVLRLCMTVPVPKEIYQEMQQRYGVTLTSVFAMTENFAMTRFTPD
                     DPPDKAGSAGRTRGACELRIVDDDERDLPAGQVGEIWMRPLQDGAMMKGYYKMPVETA
                     REFVDGWFRTGDRGYLDSDGYLYFVDRKKEAIRRRGENISGYEVELILSRHPAILEVA
                     AIPVASEMSEDDVMVYVVLKSGQTLTHADVVHFAAEHMSYFMVPRFVEFIGELPKTAS
                     EKLEKYKLKQDAQARRGELWDREREGIAVKR"
     gene            complement(2247..>2837)
                     /locus_tag="VF308_08385"
     CDS             complement(2247..>2837)
                     /locus_tag="VF308_08385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436710.1"
                     /translation="GKTTLLRTISGLMRARSGSIRLDGQEIRTVKPDAIVRLGIAQVP
                     EGRGIFPDLTVRENLLVGAHTRAGRTDVAADCGRMLGMFPALARREKQEGSTLSGGEQ
                     QMLALARALMGRPRLLLADEVSLGLAPVITKQVFGHLQMLREQGMTIVVVEQNAHLVM
                     KMADHVYVLKHGRVAMHGTSQELASRRELTEAYLGE"
BASE COUNT          439 a          957 c          948 g          493 t
ORIGIN      
        1 gccggtgttc cagggcgaca ccttgcacgt caggaccgag gtgctgtcgt tgcgagcgag
       61 cgcctcacgc ccgatggcgg gcatcgtcga gttccgccac atcgcctaca accaagacga
      121 tgtcgaggtc gcgcgctgca cgcgcagcgc tttcatgcac cggcagccgg cgtgatcgcc
      181 gcgcggtcct gggtctttgt tccgggcgac agcgcccgca agatcgaacg cgcgctcttg
      241 gcgtggcacg caatcgcgac gaaggcggtc gctgccgtga gccgttcagg ctggcgcgca
      301 gcctgatgct gattcgccgc cgctgccgct gccgagtgca gtgccgtcga cgcggtcttc
      361 gtcgactttc gcgacgccga cgcgctggtc ctcgagtgca agggagcaag ggccgacggg
      421 ttcaccgcga aggcggcgat ccaccccgac caggtcggcg cgatcaacca tgccttcagc
      481 gcgaccgcgc aagagcgcgc gtgggccgag caggtgatcg ctgcgttggg gaacggaggc
      541 gtcgtcgacg gccggatggt cgacgcgccg gacctgcgcc tggcgctgcg catcctcggc
      601 gggcgactca gcgcttgacc gcgatgcctt cgcgctcgcg atcccagagc tcgccgcgcc
      661 gcgcctgcgc gtcctgcttc agcttgtact tctcgagctt ctcgctcgcc gtcttcggca
      721 gctcgccgat gaattcgaca aagcgcggca ccatgaaata gctcatgtgc tcagccgcga
      781 aatgcacgac gtcggcgtgt gtgagcgtct gcccggactt gagcaccacg tagaccatca
      841 cgtcgtcttc gctcatttcc gaagccacgg gaattgcggc gacctcgagg atcgccggat
      901 gccgcgacag gatcagttcg acctcgtagc ccgagatgtt ctcgccgcgg cgtcggatcg
      961 cttccttctt tcggtcgacg aagtagaggt agccgtcgga atcgagatag ccgcggtcgc
     1021 ccgttcgaaa ccagccgtcg acgaactcgc gcgcggtctc gaccggcatc ttgtagtagc
     1081 ccttcatcat cgccccgtcc tgcagtggcc gcatccagat ctcgccgacc tgtcccgcgg
     1141 gcaggtcgcg ctcgtcgtcg tcgacgatgc gcagctcgca ggcgccacgc gtgcggccgg
     1201 ccgagccagc cttgtcgggc ggatcgtcgg gcgtgaagcg cgtcatcgcg aagttctcgg
     1261 tcatcgcgaa caccgaagtc agcgtgacgc cgtagcgctg ctgcatctcc tggtagatct
     1321 ccttcggcac cggcaccgtc atgcacaggc gcaagacgtg gtcgcgctcg tgcgggccgg
     1381 gcggcagctt ccagatgatg ttggtcattg cgccgagcgt gttgaactgg gtcgccccgc
     1441 tcgtgcggat ctcgtcccag aaacgcgtgg ccgaaaagcg cggcgcgagc gcgatcgcgg
     1501 cgtcggccca gagcgcggcg tagcacgtgt accagatggc attgccgtgg aagaggggaa
     1561 ggcaggtgta gaggacgtcg tccggtcggt agccgaagtc gatcgtcagc gcgcgtccga
     1621 ccgcgtggcc ttgcgagtgc gggcacatca cgcccttcga cggaccggtc gtgcccgagg
     1681 tgtacatgat cagatgcgtg tcgtcgtagg cgacagcgtc gagcggcggc tgcgagtcgt
     1741 cgtcggactc gagctcggcg agcgcgtgca ccggggcgcc ggtggcgccg aggccgcagt
     1801 cggccagtga tcgttcgccg cggtacacgt agcgccgcac cttcgccagt tgcggcgcaa
     1861 gcgcggcgac gcggtcaacc cactcgtcat cgacgaccac gcacgacgca tccgactgat
     1921 cgatgaaata gcgaagcaac tcgcctttcg cggcggtgtt gatcggcacc gcgaccgcgc
     1981 cgatcttgcc gagtccccac gagacccaga agaactcggg acagttcggc aacatcaccg
     2041 cgacatggtc gccgtgggcg atgccaagtg cgctgaagcc gttggcgtag cggttcgtca
     2101 tctcctcgag ctcggcgtag ctccaggtgt ggccttccca gatcagaaac gtcttgtcgg
     2161 gaatgcgccg ggccttctcc gccaggatgc ggcccatcgt tcgctcatgg agttcgtagt
     2221 cgtgcatcct gatccgcatc cttccgtcat tcgccgaggt aggcctcggt cagctcgcgc
     2281 cgcgatgcca gctcttgcga ggtgccgtgc attgccacgc ggccgtgctt gagcacgtag
     2341 acgtggtcgg ccatcttcat cacgaggtgg gcattctgct cgacgacgac gatggtcatg
     2401 ccttgctcgc gcagcatctg cagatgaccg aaaacctgct tcgtgatcac cggcgcaagg
     2461 ccgaggctca cctcgtcggc aagcagcagc cgcggccgcc ccatcagcgc gcgcgcgagt
     2521 gccagcattt gctgctcgcc accgctcagg gtcgagcctt cctgcttctc gcgccgcgcg
     2581 agcgcgggaa acatcccgag catgcgcccg cagtcggccg cgacgtcggt gcgccccgcg
     2641 cgcgtgtgcg caccgacgag cagattctcg cgcaccgtca ggtcggggaa aatgccgcgg
     2701 ccctcgggca cttgcgcgat gccaagccgc acgatggcgt cgggctttac cgtgcggatc
     2761 tcctggccgt cgaggcggat gctgccgctg cgcgcccgca tcaggccgct gatcgtgcgt
     2821 agaagcgtcg tcttgcc
//
LOCUS       DASVHM010000444         1899 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_971837, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000444 DASVHM010000000
VERSION     DASVHM010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_971837"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..939
                     /locus_tag="VF308_08390"
     CDS             <1..939
                     /locus_tag="VF308_08390"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX7436711.1"
                     /translation="VNTNASCEVRIMRDGSVELLSGVQDIGTGICTVLAQVVAEEMGL
                     RPEDIVIRIGDTDFPAGPPSYGSLCTASITPPARNAAHRVLRELFDAVAPVLGAAPES
                     LVARGGRIATADNARGMSFREAAARLRTDRISAVASRSDDYGGFGFRMGDMASAQNAL
                     GGVQFVQVAVDVETGIVRVERVVAAQDCGRPMNPRQIESQVQGGVLMGLSYALYEERV
                     LDRHTGHVLNADLEHYKTARSLETPEIEVILLENYQGTSATDAYGIAEPANVATAPAI
                     ANAVYNAIGARVRQLPMTPATILGALGRIPARSARA"
     gene            1002..>1899
                     /locus_tag="VF308_08395"
     CDS             1002..>1899
                     /locus_tag="VF308_08395"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HEX7436712.1"
                     /translation="MADAMQTQSGRPGTDAVVLKAGGIDLLDLMKAGLLSPRRVANLR
                     AIPGLGRIVEEPGGAVRIGAMVTLAQLADHPLIRARYRALAEAAGQSASPQIRQVATI
                     GGNLLQRPRCWYFRSLHHHCVRKGGQTCFAFAGENEYHAIFGHNGCAMVHPSTSATAL
                     VAFGARAEIAGARGAQRVVSLEDFFVLPDVDIARENALKSGEILTAIVLAPSGPAVRS
                     AHLRQGETDSFDWPVADVAVVLDMGAQGVCGRASVVLGAAAPVPYRAKGAEAVLAGKR
                     ISEEAARSAAQAALAGAAPLSRN"
BASE COUNT          285 a          664 c          664 g          286 t
ORIGIN      
        1 gtcaacacca acgcgtcgtg cgaggtgcgc atcatgcgcg acggatcggt cgagctgctc
       61 tccggtgtgc aggacatcgg caccggcatc tgcaccgttc tcgcccaggt cgtcgccgaa
      121 gaaatgggac tgcgtcccga agacatcgtg attcgcatcg gtgacaccga cttccccgcc
      181 gggccgccct cgtatggcag cctgtgcaca gcgtcgatca cgccaccggc gcgcaatgcg
      241 gcgcaccggg tgctgcgcga actgttcgac gccgtggcgc cggtgctcgg cgcggcgccg
      301 gagagcctcg tcgcgcgcgg cggccgcatt gccacggccg acaacgcccg cggcatgagt
      361 ttccgcgagg cggctgcacg cctgcgcacg gatcgcatta gcgcggtggc gagtcgctcc
      421 gacgactacg ggggcttcgg cttcaggatg ggcgacatgg cctccgcgca gaatgccctg
      481 ggtggcgttc agttcgtgca ggtcgcggtg gacgtcgaga ccggcatcgt gcgcgtggag
      541 cgcgtcgtcg cggcgcagga ctgcggtcgc ccgatgaatc cccgccagat cgaaagccag
      601 gtgcagggcg gcgtcctgat gggcctgtcc tatgcactgt acgaagagcg cgtgctcgac
      661 cggcacaccg gccacgtgct caatgccgac ctcgagcact acaagaccgc ccggtccctt
      721 gagacgcctg agatcgaggt catcctgctc gagaactacc agggaacgag cgcgaccgat
      781 gcctacggca tcgccgagcc ggccaacgtc gccaccgcgc cggccatcgc caacgctgtc
      841 tacaacgcca tcggcgcgcg cgtgcgccag ctgccgatga cgcccgccac gatcctcggt
      901 gcgctcggtc gcattcccgc aaggagcgcg cgcgcatgaa ccgcttcgaa tggaccagcc
      961 cccgcggcgt cgccgaagcg gcgggtgcgg gatcgatcac ggtggccgac gccatgcaga
     1021 cgcaaagcgg ccggccggga accgatgcgg tcgtcctgaa ggccggcggc atcgatctgc
     1081 tcgacttgat gaaggcgggg ctgctcagcc cgcgccgcgt cgccaacctg cgcgccattc
     1141 ctggtttggg gcgcatcgtc gaagagccgg gcggcgccgt gcgcatcgga gcgatggtta
     1201 cgctcgccca actcgccgat catccgttga tccgcgcgcg ctaccgcgcc ctggccgagg
     1261 ccgcggggca atcggccagc ccgcagatcc ggcaggtggc gaccatcggc ggcaacctgc
     1321 tgcagcggcc gcgctgctgg tacttccgtt cgctgcacca ccactgcgtg cgcaagggcg
     1381 gccagacgtg ttttgcgttc gccggcgaga acgagtacca cgcgatcttc ggccacaacg
     1441 gttgcgccat ggtgcacccc tcgacatcgg ccacggcgct ggtggccttc ggcgccaggg
     1501 ccgagatcgc gggtgcccgc ggcgcccagc gcgtcgtcag ccttgaagat ttcttcgtcc
     1561 tgcccgatgt ggacatcgcg cgagagaacg ctctgaagtc gggtgaaatc ctcacggcta
     1621 tcgtgctcgc gccctcaggg cctgcggtcc gctcggcgca cctgcgtcag ggcgagacgg
     1681 attccttcga ctggccggtt gccgacgttg cggtcgttct cgacatgggg gcgcagggcg
     1741 tctgcgggcg cgcttcggtc gtgctcggcg ccgcggcacc cgtcccgtat cgggccaagg
     1801 gggcggaggc cgtactggcg gggaaacgga tctccgaaga ggccgcgcgc agcgcggcgc
     1861 aagcggcgct cgccggcgct gcgccgctca gcaggaacg
//
LOCUS       DASVHM010000445         1694 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_610588, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000445 DASVHM010000000
VERSION     DASVHM010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_610588"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1223)
                     /gene="frc"
                     /locus_tag="VF308_08400"
     CDS             complement(<1..1223)
                     /gene="frc"
                     /locus_tag="VF308_08400"
                     /EC_number="2.8.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033608 - formyl-CoA transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA];
                     GO_process: GO:0033611 - oxalate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyl-CoA transferase"
                     /protein_id="HEX7436713.1"
                     /translation="MTKALDGVRILDFTHVQSGPTCTQLLAWFGADVIKVEKAGEGDA
                     TRGQLRDIPDVDSLYFTMLNHNKRSITVNTKDPKGKEVVDRLIKSCDVLVENFAPGAL
                     DRMGFTWEHIHALNPRMIVASVKGFGPGPYEDCKVYENVAQCAGGSASTTGFDDGPPL
                     VTGAQIGDSGTGLHLALGIVAALYQRNTTGRGQKVLAAMQDGVLNLCRVKLRDQQRLD
                     RTGVMTEYPQYPDIGFGEAVPRAGNASGGGQPGWILKCKGWQHDPIAYIYFITQAPVW
                     SAICKVIGEEGWITDPHYATPKARLPHLKSIFARIEEWTMTKTKFEAMDILNKFDIPC
                     GPILSMKEIAEEPSLRATGTVVEVDHPTRGKYLTVCNPIKMSDSATEVKRSPLLGENT
                     EEVLTELGYSAGEMAT"
     gene            complement(1261..>1694)
                     /locus_tag="VF308_08405"
     CDS             complement(1261..>1694)
                     /locus_tag="VF308_08405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEX7436714.1"
                     /translation="IMGIGMGFAIAAAVTTGKPVIAIEGDSAFGFSGMEVETICRYGL
                     PVCVIVFNNNGVYKGTDTNPRGGDVAPTVFVKGARYDKMIEAFGGVGVNATTPDELRK
                     GLTEAVASGKPTLINAVIDETAGTESGRITSLNPQAAAKKK"
BASE COUNT          237 a          544 c          579 g          334 t
ORIGIN      
        1 gtcgccatct cgccggccga gtagccgagc tcggtgagca cttcctcggt gttctcgccg
       61 agcagcggcg atcgcttcac ctcggtggcg ctgtcggaca tcttgatggg gttgcaaacg
      121 gtgaggtact tgccgcgcgt cggatgatcg acctcgacca cggtgccggt cgcgcgcagc
      181 gacggctctt cggcgatctc cttcatcgac aggatcggcc cgcacgggat gtcgaacttg
      241 ttgaggatgt ccatggcctc gaacttggtc ttggtcatcg tccattcctc gatccgcgcg
      301 aagatcgact tgaggtgcgg caggcgcgct ttcggcgtcg cgtagtgcgg gtcggtgatc
      361 cagccttcct cgccgatcac cttgcagatc gcgctccaca ccggcgcctg ggtgataaag
      421 tagatgtacg cgatggggtc gtgctgccag cccttgcact tcaggatcca gcccggctgg
      481 ccgccgcccg aggcgttgcc ggcgcgcggc accgcctcgc cgaagccgat gtcggggtac
      541 tgcgggtatt ccgtcatcac gccggttcga tcgaggcgct gctggtcgcg caacttgacg
      601 cggcacaggt tgagaacgcc gtcctgcatc gcggcgagga ccttctggcc gcgcccggtg
      661 gtgttgcgct ggtagagcgc ggcgacgatg ccgagggcga ggtgcagccc cgtgcccgaa
      721 tcgccgatct gcgcgccggt gacgagcggc gggccgtcgt cgaatccagt ggtggacgcc
      781 gagccgccag cgcattgcgc gacgttctcg tacaccttgc aatcttcgta tgggccggga
      841 ccgaagcctt tcaccgaggc gacgatcatg cgcgggttga gcgcgtggat gtgctcccag
      901 gtgaagccca tgcggtcgag cgcgccgggg gcgaagttct cgaccagcac gtcgcacgac
      961 ttgatcagcc ggtcgaccac ttccttgccc ttcgggtcct tggtgttgac cgtgatcgag
     1021 cgcttgttgt ggttgagcat cgtgaagtag aggctgtcga catcggggat gtcgcgcagc
     1081 tggccgcgcg tggcgtcgcc ttcgccggcc ttctcgacct tgatcacgtc ggcgccgaac
     1141 caggcgagca gctgcgtgca ggtcggcccc gactggacgt gcgtgaagtc gaggatgcga
     1201 acgccgtcga gtgctttggt catcgttggt tcctgaggga tcgtgccgcg tgagcggaag
     1261 tcacttcttc ttcgccgcgg cttgcggatt gaggctcgtg atgcggccgc tctcggtgcc
     1321 cgccgtctcg tcgatcaccg cgttgatgag ggtcggcttg cccgacgcga ccgcctcggt
     1381 caggcccttc ctcagctcgt cgggcgtcgt cgcgttgacg ccgacgccgc cgaaggcctc
     1441 gatcatcttg tcgtagcgcg cacccttgac gaacaccgtc ggcgcgacgt cgccgccgcg
     1501 cgggttggtg tcggtgccct tgtagacgcc gttgttgttg aagacgatca cgcacaccgg
     1561 caggccatag cggcagatcg tctcgacctc catgcccgag aagccgaagg cgctgtcgcc
     1621 ctcgatggcg atcacgggct tgccggtcgt cacggccgcg gcgatggcga agcccatgcc
     1681 gatgcccatg attc
//
LOCUS       DASVHM010000446         2033 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1186415, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000446 DASVHM010000000
VERSION     DASVHM010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1186415"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1039
                     /gene="prfA"
                     /locus_tag="VF308_08410"
     CDS             <1..1039
                     /gene="prfA"
                     /locus_tag="VF308_08410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEX7436715.1"
                     /translation="ATLADGAASADMRRFRDLTREHAEVSGLVERFRRFEQRERDLTA
                     ARDLLAAPGIEADMAEMAEEEIRGAPADIETLRFELQAALLPRDTDDVRNAFLEIRAG
                     TGGDESALFAGDLARMYLRHCERKGWQTEVLSESASDLGGYKEIVFRISGDGVYGRLK
                     FESGGHRVQRVPATETQGRIHTSACTVAVLPEPDAAEELKLNPAELRIDTFRASGAGG
                     QHVNKTDSAIRITHLPTGIVAECQDDRSQHRNKAKAMSVLLARLAEKDRSERAAREAA
                     TRKGLIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLQAILDGDLDDVFAALQAAQAA
                     EQLAALESGAA"
     gene            1036..1866
                     /gene="prmC"
                     /locus_tag="VF308_08415"
     CDS             1036..1866
                     /gene="prmC"
                     /locus_tag="VF308_08415"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEX7436716.1"
                     /translation="MTGPDVAAALAQGRALGLDRLDAHVLLGHVLGRPRTWLIAHGEA
                     VLGAAEAAAWRALAERRAGGEPLAYLVGAKEFHGLPLRVNPQVLIPRPETEILVDRAI
                     EILRTAQLGAARPRVVDLGTGSGAVALALKAAVPAAVIFASDESEAALEVARANAARL
                     GLEVEFRAGSWWQPWAGQRFDLVVSNPPYVAEADPHLAALRHEPVTALSAGVDGLADL
                     NVIVRGAAGHLHPGGSLWLEHGFDQAPAVTEMLRAAGFAGLQTCADLGGRPRCTGGRL
                     "
BASE COUNT          334 a          725 c          692 g          282 t
ORIGIN      
        1 cgcgaccctc gccgacggcg ccgcctcggc cgacatgagg cgctttcgcg acctgacgcg
       61 cgaacacgcc gaagtgtccg gactggtcga gcggttccgc cgtttcgagc aacgcgagcg
      121 cgacctgact gcggcacgcg accttctcgc cgcaccgggc atcgaggccg acatggccga
      181 gatggccgaa gaggagatcc gtggcgcccc agccgatatc gagaccttgc gcttcgagct
      241 tcaggcggcc ctgctaccgc gcgacacgga cgacgtgcgc aatgccttcc tcgagatccg
      301 cgccggcacc ggtggcgacg agtcggccct tttcgccggc gacctggcgc gcatgtacct
      361 acgccactgc gagcgcaagg gctggcagac cgaggtgctg agcgaaagcg cgagcgacct
      421 cggtggctac aaggaaatcg tctttcgcat cagcggcgac ggcgtctacg ggcgcctcaa
      481 gttcgagtcg ggaggccatc gcgtgcagcg cgttccggca acggaaacgc agggtcgcat
      541 ccacaccagc gcctgcacgg tcgcggtgct gcccgagccg gatgcggccg aagagctcaa
      601 gctcaatccg gccgagcttc gcatcgacac ctttcgcgcg agcggcgccg gcggccagca
      661 cgtcaacaag acggacagcg ccatccgcat cacccacctg ccgaccggca tcgtcgccga
      721 gtgccaggac gaccgctcgc aacatcgcaa caaggccaag gcgatgtcgg tgctgctggc
      781 gcgactcgcc gaaaaggatc gctcggagcg cgctgcccgc gaagccgcaa cccgcaaggg
      841 cctgatcggc agtggcgacc gcagcgaccg catccgcacc tacaactttc cgcaaggtcg
      901 cctgaccgat caccgcatca acctgacgct ctacaagctg caggcgatcc tggacggcga
      961 tctcgacgac gtgttcgcgg cgctgcaagc cgcgcaagcc gcggagcagc tggccgcact
     1021 cgaaagcggc gcggcgtgac cggaccggac gtcgccgcag cactcgccca gggccgcgcg
     1081 ctcgggctcg atcggctcga tgcccacgtg ctgctcggcc acgtgctcgg ccgtccgcga
     1141 acctggctga tcgcccacgg cgaggcggtg ctgggtgcgg ccgaagccgc tgcctggcgc
     1201 gcgctcgccg aacgccgcgc cgggggcgag cccctggcct atctggtcgg ggcgaaggag
     1261 ttccatgggc taccgctgcg tgtcaacccg caggtgctga tcccgcggcc cgaaaccgaa
     1321 atcctggtcg accgggcgat cgagattctg cgcaccgcgc agctcggcgc cgcgcgaccc
     1381 cgggtggtcg atctcggcac cggcagcggc gccgtagcac tcgccttgaa agcggcagtc
     1441 cccgcagccg tgatcttcgc ctcggacgag agcgaggccg cgctcgaggt ggcacgggcc
     1501 aacgcggccc gcctcggcct cgaggtcgag ttccgtgcgg gttcctggtg gcagccatgg
     1561 gccggccagc gcttcgacct ggtcgtgagc aacccgccct acgtggccga agccgatccg
     1621 catctcgccg cgctgcgcca cgaaccggtc acggcgctga gcgccggcgt cgacgggttg
     1681 gcagacctca acgtcatcgt tcgcggcgcc gccggccacc tgcatccggg cgggtcgctg
     1741 tggctcgaac atggcttcga tcaggcgccc gctgtgacgg aaatgctgcg agccgccggc
     1801 ttcgccggcc tgcaaacgtg tgcggacctg ggcgggcgac cgcgctgcac cggtggtcgt
     1861 ctgtaagtac cggcaaggtt cgcaggaagg agggtctccc cgaaagtccc gggcgggtgc
     1921 cgtgaaaaaa gcgacgcatt cgcttgcgct agcgcagagt cggtcgcctg gataccacac
     1981 ggacgcttcg atcccggcgt agcatgaact cccggtggct catcgaagtc gaa
//
LOCUS       DASVHM010000447         2223 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_465026, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000447 DASVHM010000000
VERSION     DASVHM010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465026"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..2210)
                     /locus_tag="VF308_08420"
     CDS             complement(108..2210)
                     /locus_tag="VF308_08420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011802719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEX7436717.1"
                     /translation="MADFSESRQQDEVVGAVVPPLIGQRPVAQQQRILAGMVGLGLLG
                     LVALTIVSIVSAGRGSAQVAASGQALMQSQRLAKSVSQALIGSAQAFPEVKESAEVLA
                     HNVRGLKTGEGDVAVAPANIQAALDPVLPLVDRAEKNAATVLAQQKVLTQVGQSLRAI
                     NRQSSDLLEVAETVSSLKLQRDASPAELSAVGTLVMLTQRIGKSANEFLTTEGVSPEA
                     VFLLGKDLNSFRDLGEGLLEGSQPLRLPGTRDPQTRERLTALMKLYEETRAQAGAILG
                     NLQGLTAAREAQASIIADSEPLRKGLEAVQDRLGGETGLGGVTLVFLVLSALIVIVGG
                     AGLVRLRVNEQDQRAAMAQSRRLEAEAQEQEAKRVNDANQAAILRLMNELQGVAEGDL
                     TQQATVTEDITGAIADSVNYTVEELRTLVSQVQGTAARVTDTTEQVEVNSTELLATSS
                     EQLREIRDTGESVLQMAGRINDVSGRAQETVKVARQSLDAAEQGLRAVQNTIGGMNSI
                     RDQIQETSKRIKRLGESSQEIGEITELISDITEQTNVLALNAAIQAASAGEAGRGFSV
                     VAEEVQRLAERSGDATRQIAALVKTIQTDTQDAVGAMERSTQGVVEGTRLSDAAGTAL
                     GEIDRVTRQLSDLIAQISNQALSEAQSANVVAANIQHIFAVTEQTGEGTRSTAQMVRE
                     LSRTAEELKQSVARFKIA"
BASE COUNT          307 a          760 c          751 g          405 t
ORIGIN      
        1 gactcgctca tcgtttgact catgggttgg tgatcgtgcg cgcttcgggg cgccgcctca
       61 ttccgtcatc gcgcgggctg gggagttgct gcggtccggc gccgcgttca ggcgatcttg
      121 aaccgagcca ccgactgctt gagctcctcg gcggtgcggg acagttcgcg caccatctgc
      181 gcggtcgatc gcgtgccttc gccggtctgc tcggtgactg cgaagatgtg ctggatgttg
      241 gcggcgacga cgttggccga ctgggcctcg ctgagggcct ggttcgagat ctgcgcgatc
      301 aggtcggaga gttggcgcgt cacgcggtcg atctcgccga gcgccgtgcc ggccgcgtcg
      361 gacaggcgcg ttccttcgac cacgccctgg gtcgagcgct ccatggcgcc gaccgcatcc
      421 tgggtatcgg tttgaatcgt cttcacgagc gcggcgatct gccgcgtcgc gtcgccggag
      481 cgctcggcca ggcgctgcac ttcctcggcc acgaccgaga agccgcgtcc cgcctcgccc
      541 gccgaggcgg cctggatcgc ggcgttgagc gcgaggacgt tggtctgttc cgtgatgtcc
      601 gagatcagct cggtgatctc gccaatttcc tgcgacgact cgccgaggcg cttgatccgc
      661 ttcgaggtct cctggatctg gtcgcggatc gaattcatgc cgccgatcgt gttctgcacc
      721 gcgcgcaggc cctgctcggc ggcgtcgagc gactggcgcg cgaccttcac ggtctcttgc
      781 gcccgccccg acacgtcgtt gatgcgcccg gccatctgca acaccgactc gccggtgtcg
      841 cgaatctcgc gcagctgttc cgacgacgtg gcgagcaact cggtcgaatt gacttcgacc
      901 tgctcggtcg tgtcggtcac gcgggcggcc gtgccctgca cctgcgacac gagcgtgcgc
      961 aattcctcga ccgtgtagtt caccgaatcc gcgatcgcgc cggtgatgtc ctcggtcacc
     1021 gtcgcctgct gcgtcaggtc gccctcggcg acgccctgca gctcgttcat cagccgcaga
     1081 atcgccgcct ggttggcgtc gttgacgcgc ttggcctcct gctcctgggc ttcggcttcg
     1141 aggcggcggc tttgcgccat cgcggcgcgc tgatcctgct cgttgacgcg cagccgcacc
     1201 aggccggcgc cgccgacgat cacgatcaag gccgacagga ccaagaacac cagcgtcacg
     1261 ccaccgagcc cggtttcgcc gccgagccga tcctgcaccg cctcgaggcc tttgcgcagc
     1321 ggttcgctgt cggcgatgat ggaagcctgg gcttcacgcg cggcggtcag gccctgcagg
     1381 ttgccgagaa tcgcgccggc ctgggcgcgc gtttcctcgt acagcttcat cagcgcggtg
     1441 aggcgttcgc gggtctgcgg atccctcgtg cccggcagcc gcagtggctg gctgccttcg
     1501 agcaggcctt cgccgaggtc gcgaaacgag ttgaggtcct tgccgagcag aaacaccgct
     1561 tcggggctga cgccttcggt ggtcaggaac tcgttcgccg acttaccgat gcgctgggtc
     1621 agcatgacga gcgtaccgac tgccgagagc tcggccggcg aggcgtcgcg ctgcagcttc
     1681 agcgaggaaa cagtttcggc gacttcgagc agatcggacg actggcggtt gatcgcgcgc
     1741 agcgactgtc cgacttgcgt caggaccttc tgctgggcca gcacggtggc cgcgttcttc
     1801 tcggcgcgat cgacgagcgg caacactggg tcgagcgcgg cctggatgtt ggcaggggcg
     1861 acggcgacat cgccttcgcc ggtcttgagg ccgcgcacat tgtgagccag cacctcggcg
     1921 ctctctttga cttccggaaa cgcctgggcg ctgccgatca gggcctgcga caccgacttg
     1981 gcgagtcgct gcgactgcat caaggcctgt ccgctcgcgg ccacctgtgc cgaaccgcga
     2041 ccggccgaga cgatcgagac gatggtcaat gcgacgaggc ccaggagacc caggcccacc
     2101 atgcctgcaa ggatgcgctg ctgctgggcg accggacgct ggccgatcaa cggcgggaca
     2161 accgcgccga ccacctcatc ctgctggcgc gactcggaga aatcggccat cccggacggc
     2221 atc
//
LOCUS       DASVHM010000448         1661 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_249306, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000448 DASVHM010000000
VERSION     DASVHM010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249306"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..674)
                     /locus_tag="VF308_08425"
     CDS             complement(<1..674)
                     /locus_tag="VF308_08425"
                     /inference="COORDINATES: protein motif:HMM:NF024923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HEX7436718.1"
                     /translation="MASTISPASDAADTPARGKRSPVLPILIVVALLGIGWATKTILY
                     NQGHVSTDNAQVDGTIVPVLAKVGGFVRTLGVDENDHVKLGQPIVLIDSSEYAVRLAQ
                     AEAELAAAAYVAGGKVVEGQAEAQIESARAAQAKATADLARYKELAAKQIVSKLQLDA
                     AQAAFDQANANLAALQRQASGAAAQLSNAEIGGKFAQARYASAKATRDNAALQLSYTK
                     VVSPVAG"
     gene            complement(727..>1661)
                     /locus_tag="VF308_08430"
     CDS             complement(727..>1661)
                     /locus_tag="VF308_08430"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX7436719.1"
                     /translation="SSAYGDEAAAQSQMAAGTAAAVYVRVLRADALFAARMADSTLSE
                     ELLAIARDQLNAGVGISLDVTRAQSQFAATRAQIISARNERSRARLDLHRALGLPLNA
                     PISLADSLPGLPTNGALPTELEATERAMRSRADLRSADAQIAAAQRQIESIKSERLPA
                     LSAFIDQGPTSKSTQHLVSTYDWGIRLSVPMFDGFRREGRIEEQQAAVRELGVRKRDL
                     TEQAAIDVSGALLDLMSAREELAATEEHLRFAEQELAQARDRFRSGVAGNADVITASL
                     SLNAARTQIVDSRAAFQSARVALARAQGTVTELP"
BASE COUNT          221 a          547 c          606 g          287 t
ORIGIN      
        1 cccgccacgg gcgagacgac cttcgtgtat gagagttgca gggccgcgtt gtcgcgcgtg
       61 gcctttgcac tggcgtagcg agcctgggca aatttcccac caatttcggc gttcgagagt
      121 tgcgccgcag cgccgctcgc ctgccgctgg agtgcggcga ggttcgcgtt cgcctggtcg
      181 aatgccgcct gcgccgcgtc cagctgcagc ttcgacacga tctgctttgc ggcgagttcc
      241 ttgtagcggg cgaggtccgc cgtcgccttc gcctgcgcgg ccctggcgga ctcgatctgc
      301 gcctcggcct ggccttcgac taccttgccg cccgcgacgt acgccgccgc ggcgagttcg
      361 gcctccgcct gcgcgagtcg cacggcgtat tcggacgaat cgatcagaac gatcggctgg
      421 ccgagtttca cgtggtcgtt ctcgtcgacg ccgagcgtcc gcacgaagcc gcccactttc
      481 gcgagcacgg ggacgatcgt gccgtccacc tgcgcgttgt cggtcgagac gtgtccctga
      541 ttgtacagga tcgtcttggt ggcccagccg atgccaagca gcgccacgac gatgaggatc
      601 ggtagaaccg ggctgcgctt tccgcgcgcc ggagtgtcgg cggcatcgct ggctggggaa
      661 atggtggagg ccatggggtc tcagttctcg agcgaaagag tgttgtgccg ggccgtgttg
      721 gccgggctac gggagttcgg tgacggtgcc ctgcgcacgc gcgagcgcga cgcgggccga
      781 ctggaaggcg gcgcgtgaat ccacgatctg ggtgcgcgcc gcattgaggc tgagcgacgc
      841 ggtgatgacg tcggcgttgc ccgcgacgcc ggaccggaag cggtcgcgcg cctgcgcgag
      901 ctcctgctcg gcgaacctca ggtgctcctc ggtcgcggcg agctcctcgc gcgccgacat
      961 cagatcgagc agtgcgccgc tcacgtcgat ggccgcctgc tcggtgaggt cgcgtttgcg
     1021 cacgccgagt tcccgcaccg ccgcctgctg ctcctcgatg cgtccctcgc ggcggaagcc
     1081 gtcgaacatc ggcaccgaga gcctgatgcc ccagtcgtac gtgctgacca ggtgctgcgt
     1141 gctcttgctg gtgggaccct gatcgatgaa cgcggagagc gccggcagcc gctcggactt
     1201 gatcgactcg atttgccgtt gcgcggccgc aatctgcgcg tcggcggagc gaaggtcggc
     1261 gcgcgatcgc atcgcgcgtt cggtggcctc cagctcggtg ggcagcgcgc cgttcgtcgg
     1321 gagcccgggc agtgaatcgg cgagcgagat gggcgcgttc agcggcaggc cgagcgcgcg
     1381 atgcaggtcg aggcgcgcgc ggctgcgctc gttgcgggcc gagatgatct gcgcgcgcgt
     1441 cgccgcgaac tgcgactgtg cgcgggtcac gtcgagcgaa atgccgacgc cggcgttcag
     1501 ctggtcgcga gcgatcgcga gcagttcctc gctgagcgtg gaatccgcca tgcgcgcggc
     1561 gaacagggcg tcggcccgga gtacgcgcac atagacggcg gctgccgttc cagccgccat
     1621 ctgcgactgt gcagcggcct cgtcgccgta tgcggaggaa c
//
LOCUS       DASVHM010000449         3639 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_682605, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000449 DASVHM010000000
VERSION     DASVHM010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3639
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_682605"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VF308_08435"
     CDS             <1..203
                     /locus_tag="VF308_08435"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEX7436720.1"
                     /translation="GGGAAFVPWLKALKRQIGIAANLTAAGVTREQIPRLVEIAVADM
                     CHQTNPRVCTAGDFERLFAGAM"
     gene            215..976
                     /locus_tag="VF308_08440"
     CDS             215..976
                     /locus_tag="VF308_08440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010104732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEX7436721.1"
                     /translation="MVGVSACFFHADSDRPIFTGKTLQYVEESIAHWVMSTGALALMI
                     PNPAGATKRGDVELDDYAERLDALVLEGGSDVWPGSYRETPLEERWSGDRIRDEYEQE
                     LLHAFAARGKPVLGVCRGLQLMNVALGGTLYQDIDTQLPGAVRHRDAVVYDRNFHELE
                     FVDGTRLAAIHAGIARANVNSVHHQAIKDLAPGLVIEARSPADGLIEAIRRPGPSYMA
                     AVQWHPEFHRRDEGTLDDTPMLIDFLHAAEAARAQ"
     gene            973..2346
                     /locus_tag="VF308_08445"
     CDS             973..2346
                     /locus_tag="VF308_08445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007870308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX7436722.1"
                     /translation="MTLLAIHNPATGALIAEVLADDGASVAAKMERARAAQPQWAARP
                     LAERQACIGRFRAALDAGIETLAATLTAEVGKPIRQSRNELNGLLGRIDFFLAEVEGA
                     TAPETVFQDAAMTERIGHDPLGVVANISAWNYPYFVGANVFVPALLTGNAVLYKPSEY
                     ATLTGQHIARLLHQAGVPEDAFAMLVGAADVGAALLAQPVDGVFFTGSAGTGAKIAAA
                     LGPRMIRTQLELGGKDPTYVADDADPKAAAESLADGAMYNSGQSCCSVERIYVHERIH
                     DAFVEAFVDAVRGFKVGDPTCEDTYIGAITRAPQLQVLEAQVADALARGATLRTGGRR
                     VAPPGNWFEPTVFTDVDHTMALMREESFGPIIGIQRVPGDAEALRLMNDTRYGLTAGV
                     YTPDEARATAILARVNAGSVYWNCCDRVSPRLPWSGHGDSGVGVTLSRYGIQAFTRLR
                     AWHLRAP"
     gene            2343..3011
                     /locus_tag="VF308_08450"
     CDS             2343..3011
                     /locus_tag="VF308_08450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IB family hydrolase"
                     /protein_id="HEX7436723.1"
                     /translation="MTRLALLDLDQTLLSGDSDALWCDFLIGEGRLDRAEFEPRNRAM
                     AERYARGAATPSEFCGFYAQTLAGAPVDGSQALRERFFVAMIAPRIPASARALVEHHR
                     QQGDRLVLTTATNRFLTELTARDLGIGDLIATEVEVVGGTFTGRTTGTLNMREGKVVR
                     LRAWLDEQGLPESILAEATFYSDSVNDLPLLLAVGHPVAVDPDPVLEARARRDGWPVL
                     RLVR"
     gene            complement(3024..>3639)
                     /locus_tag="VF308_08455"
     CDS             complement(3024..>3639)
                     /locus_tag="VF308_08455"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEX7436724.1"
                     /translation="LVPIALALTYERTVAKMRATHRKLRHLADIDVLTRLPNRRHFHE
                     LAARSLATTEPATAAVLMFDIENLKRINDLLGQATGDEALRQVGLALRETLRNRDVAG
                     RLGGDEFAALLPDTTVADAVRVASRISDHLQDRQVAPRTARLTLNVGAVQMRAGDTII
                     EALRRADIALDDARSHTRGRPVSAASLEDTVTLPRNAQLEPKAV"
BASE COUNT          539 a         1286 c         1259 g          555 t
ORIGIN      
        1 ccggcggcgg ggccgccttc gtgccgtggc tgaaggcgtt gaagcgccag atcgggatcg
       61 ccgcgaacct gacggccgcc ggcgtgacgc gcgagcagat tccccgcctg gtcgagatcg
      121 cggtcgccga catgtgccac cagaccaatc cgcgggtctg caccgcgggc gatttcgagc
      181 gactctttgc gggggcgatg tgaaggacag attgatggtc ggcgtctcgg cgtgtttctt
      241 ccacgccgac tccgaccgac cgatcttcac cggcaagacc ctgcagtacg tcgaggaatc
      301 gatcgcgcac tgggtcatgt cgaccggcgc gctggcgttg atgatcccga acccggccgg
      361 cgcgacgaag cggggcgacg tcgaactcga cgactatgcc gagcggctcg acgcgctcgt
      421 gctcgaaggc ggttcggatg tctggccagg cagctaccgc gaaacgccgc tcgaggagcg
      481 ctggtccggc gaccgcatcc gcgatgaata cgaacaggaa ctcctgcatg ccttcgccgc
      541 gcgcggcaaa ccggtgctcg gcgtctgccg cggcctgcaa ttgatgaacg tcgcgctcgg
      601 cggcacgctc taccaggaca tcgacacgca gctcccgggc gcggtgcggc atcgcgatgc
      661 ggtggtgtac gaccggaatt tccacgaact cgaattcgtc gacgggaccc ggctcgccgc
      721 gatccacgcc ggcattgcgc gcgcgaacgt caacagcgtg caccatcaag ccatcaagga
      781 cctcgcccct ggcctggtca tcgaggcgcg cagcccggcc gacgggctca tcgaggcgat
      841 ccggcgcccc gggccaagct acatggcggc ggtacagtgg caccccgagt tccatcgccg
      901 cgacgagggc acactcgacg acacgccgat gctgatcgac ttcttgcacg cggccgaagc
      961 cgcaagagcc caatgaccct tctcgccatc cacaaccccg cgaccggcgc gctgatcgcc
     1021 gaagtgctcg ccgacgatgg cgcgagcgtc gccgccaaga tggagcgcgc ccgcgccgcg
     1081 cagccgcagt gggcggcgcg cccgctcgcc gagcggcagg cctgcatcgg gcgctttcgc
     1141 gccgcgctgg atgccggcat cgagacgctc gccgcgaccc tgaccgccga agtgggcaag
     1201 ccgatccgcc agtcgcgcaa cgaactgaac ggcctgctcg ggcgcatcga ttttttcctc
     1261 gccgaggtcg agggcgcgac cgcgcccgag acggtctttc aggatgccgc gatgactgag
     1321 cgcatcggcc atgacccgct cggcgtcgtc gccaacatct cggcctggaa ctacccgtac
     1381 ttcgtcggcg ccaacgtctt cgtgccggcg ctcctgacgg gcaacgcggt gctctacaag
     1441 ccgtccgaat acgcgaccct gaccggacag cacatcgccc ggctgctgca ccaggcgggc
     1501 gtgcccgagg atgccttcgc catgctggtc ggcgcggccg atgtcggcgc ggcgctcctc
     1561 gcccaaccgg tcgacggcgt gttcttcacc gggtcggccg gcaccggcgc gaagatcgcc
     1621 gcggcgctcg ggccgcgcat gatccgcacg cagctcgaac tcggcggaaa ggacccgacc
     1681 tacgtcgccg acgacgccga tccgaaggcc gccgccgagt cgctcgccga cggtgcgatg
     1741 tacaactccg ggcagagttg ctgctcggtc gagcgcatct acgtgcacga gcgcatccac
     1801 gatgcgttcg tcgaggcctt cgtcgatgcg gtgcgcggct tcaaggtcgg cgacccgacg
     1861 tgcgaagaca cctacatcgg tgcgatcacg cgcgcgccgc aattgcaggt gctcgaggcc
     1921 caggtggccg acgcgctggc ccgcggcgcc acgctgcgca ccggcggccg gcgcgtcgcg
     1981 ccgccgggca actggttcga gccgaccgtc ttcacggacg tcgaccacac gatggcgctg
     2041 atgcgcgagg aaagcttcgg tccgatcatc ggcatccagc gggtgccggg cgacgccgag
     2101 gcgctgcgcc tgatgaacga cacgcgttac ggcctgaccg cgggcgtcta cacgccggac
     2161 gaggcgcgcg ccacggccat cctggcccgg gtcaatgcgg gctccgtcta ctggaactgc
     2221 tgcgatcggg tcagcccgcg actgccctgg tcaggccacg gcgattcggg tgtcggcgtc
     2281 accctctcgc gctacggcat ccaggccttc acgcggctgc gtgcctggca cctgcgcgcg
     2341 ccgtgacccg gctcgccctg ctcgatctcg atcagacgct gctcagcggc gacagcgacg
     2401 ccttgtggtg cgactttctg atcggcgaag gccggctcga ccgggccgag ttcgaaccgc
     2461 gcaaccgcgc gatggccgag cgctatgcgc gcggcgcggc gacgccttcg gagttctgcg
     2521 gtttctatgc gcaaacgctc gccggcgcgc ccgtggacgg gtcgcaggcg ctgcgcgaac
     2581 gttttttcgt cgcgatgatc gcgccgcgaa tccccgcctc ggcgcgggcg cttgtcgagc
     2641 accatcgaca gcagggcgat cgcctcgtct tgacaacggc gacgaatcgc ttcctcaccg
     2701 agctcaccgc ccgcgacctc ggcatcggcg acctgatcgc gaccgaggtc gaggtcgtcg
     2761 gcggcacgtt caccggacgc acgaccggca cgctcaacat gcgtgaaggc aaggtggtcc
     2821 ggctacgggc gtggctcgac gagcagggcc tgccggagtc gatcctcgcc gaggccacct
     2881 tctacagcga ttccgtgaat gacttgccgc tgctgctcgc ggtcggccat ccggtcgcgg
     2941 tcgatccgga cccggtgctc gaggcccggg cgcgtcgcga cggctggccg gtgctacggc
     3001 tcgtccgctg accgggctgc gcctcagacc gccttcggct cgagctgcgc gttgcgcgga
     3061 agcgtgaccg tgtcctcgag gctggcggcc gagaccggcc ggccccgggt gtggcttcgc
     3121 gcatcgtcga gcgcgatgtc ggcgcggcgc agtgcttcga tgatcgtgtc gccggcccgc
     3181 atctgcaccg ctcccacgtt gagggtcagg cgcgccgtgc gcggtgcaac ctggcggtct
     3241 tggaggtgat cgctgatgcg cgaggcgacc cgcaccgcat cggcgaccgt cgtgtccggc
     3301 agcaaggccg cgaactcgtc gccgccgaga cggccggcga cgtcgcggtt gcgcagcgtc
     3361 tcgcgcaggg cgagcccgac ctggcggagc gcttcgtcgc cggttgcttg gccgagcagg
     3421 tcgttgatcc gtttcaggtt ctcgatgtcg aacatcagca ccgccgcagt cgctggctcc
     3481 gtcgtcgcca gggaacgcgc ggccagttcg tgaaagtggc gccggttcgg aaggcgtgtc
     3541 agcacgtcga tgtcggcgag gtggcgaagc ttgcgatggg tggcgcgcat cttcgcgacg
     3601 gtgcgctcgt aggtcagcgc cagcgcgatc ggaaccagg
//
LOCUS       DASVHM010000450         3701 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_32059, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000450 DASVHM010000000
VERSION     DASVHM010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3701
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32059"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VF308_08460"
     CDS             <1..257
                     /locus_tag="VF308_08460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="prepilin-type cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEX7436725.1"
                     /translation="PNAAPAACARNTYNDVLDYDGYATSGQVCNIDGTAIASLVGYSV
                     RVQVQAAALAGVGAAQRITVTVTRGSDSLSLTGWRTDFAS"
     gene            262..1158
                     /locus_tag="VF308_08465"
     CDS             262..1158
                     /locus_tag="VF308_08465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEX7436726.1"
                     /translation="MPNVSRRRAVRGFTLIELILVIIVGSVMAATLVVFFRPAVDGYL
                     ASRARADLTDQADTALRRITRDVRMAVPNSVRTPGSQCFEVVPSSGGGRFRNGPDTVN
                     DSGPNCTPGASCSAPLDSAQATTVFDVLTPLASTPAAGDWVVVGNQNPADVYGGVNRA
                     TIASVAMPAAAYGRHRITVASTQFPLGYDGARFTVVPNAQQAVFYVCSGADGTLDATG
                     NGRGTLYRLASYGFNAAYPAACPAVASADVLATRVRTCSFVYDPNQGATQQSGFVWME
                     IELARNGEKAHLAMGAHVANGP"
     gene            1155..1595
                     /locus_tag="VF308_08470"
     CDS             1155..1595
                     /locus_tag="VF308_08470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MSHA biogenesis protein MshP"
                     /protein_id="HEX7436727.1"
                     /translation="MSMRQRGFGVIAAIVVLVVLAVLAAAVVRFGSVAQATNAQNVRS
                     ARAIQAARAGTDWGLWQAFKGTWASCSGASQTLDLSASTGFHVTVSCDSRTFNEGESA
                     PGTPRSVRIYTIDAVACSSAACPDNAAATAPNYIERRWQVHASD"
     gene            complement(1633..2934)
                     /locus_tag="VF308_08475"
     CDS             complement(1633..2934)
                     /locus_tag="VF308_08475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HEX7436728.1"
                     /translation="MNDITITALLIAALFLILGSGVWIGLTLSGVAWIGMQLFSSRPA
                     GDAMAVTTWGSASSWTLTALPLFIWMGEILFRTRLSQDMFRGLAPWVQGLPGRLLHTN
                     VVGCAIFAAVSGSSAATCATIGKMSLPELTRRGYPEIMSVGSLAGAGTLGLLIPPSII
                     MIVYGVTADVSISQLFIAGVIPGVLLALIFSLYIGAWSLFNAEKIPPPDAPMSLAQKL
                     HESRNLIPVVLLIAAVLGSIYSGIATATEAAGLGVVGALLLSALQGSLTWESFSQALM
                     GGTRLYCMIALILAGAAFLTLSMGYIGLPRHLAEWIATLGLSKFGLILALTAFYVVLG
                     CFLDGISMVVLTMGVIMPTVQKAGIDPLWFGIFIVIVVEMAQVTPPVGFNLFVLQGMT
                     KREIGYIARAAFPFFLLMVLMVVVLYVFPQIVTFLPDQMKG"
     gene            complement(2927..3436)
                     /locus_tag="VF308_08480"
     CDS             complement(2927..3436)
                     /locus_tag="VF308_08480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015014448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease subunit"
                     /protein_id="HEX7436729.1"
                     /translation="MRRLLDALYEGAGALAALFMVLLLVMVMLSIAGRQFHFNIPGVD
                     AYAGYMMAAAGFLALAHTLKRGEHIRVTLLLASLRGGARRGFEIWSLFAAALLASLAA
                     FYSGKLSWQSYTFHDVSTSNDATPLWLPQLSMAIGTAVLAIAFVDELVLEVRGRRVVI
                     EPAEALRNE"
     gene            complement(3463..>3701)
                     /locus_tag="VF308_08485"
     CDS             complement(3463..>3701)
                     /locus_tag="VF308_08485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter
                     substrate-binding protein"
                     /protein_id="HEX7436730.1"
                     /translation="TQAALLKAGADAEVRGWALSQAKNLEYMDLLKKNGMTIVAPPAQ
                     LTSDMKKVGDTMLKEWLEKAGPEGQAIIDSYKKM"
BASE COUNT          644 a         1254 c         1268 g          535 t
ORIGIN      
        1 ctccgaacgc cgctcccgcc gcctgtgcgc gcaacacgta caacgacgtg ctcgactacg
       61 acggctatgc cacgagcggg caggtctgca acatcgacgg cactgcgatc gcgtcgctcg
      121 tcggctattc ggtgcgggtg caggtgcagg ccgcggcact cgcgggcgtc ggcgcggccc
      181 agcgcatcac ggtcaccgtg acgcgcggtt ctgacagcct gagcctgacc ggctggcgca
      241 ccgacttcgc gtcctgaagc gatgccgaac gtctcccgcc gtcgcgccgt gcgtggcttc
      301 acgctgatcg agctgatcct cgtgatcatt gtcggctcgg tgatggccgc gacgctggtg
      361 gtcttcttca ggcctgccgt cgacggctac ctcgcgagcc gcgcccgcgc cgacctcacc
      421 gaccaggccg atacggcgtt gcgacgcatc acgcgcgatg tacgcatggc ggtgccgaac
      481 tcggtgcgca cgccgggctc acagtgcttc gaggtcgtgc cgagcagcgg cggcgggcgc
      541 tttcgcaacg ggcccgacac cgtcaacgat tcgggtccga actgcacgcc cggcgcgagc
      601 tgttccgccc cgctcgacag cgcgcaggcg acgaccgtgt tcgacgtgct gacgccgctc
      661 gcgtcgacgc ccgcggccgg cgactgggtg gtggttggca accagaaccc ggccgacgtg
      721 tacggtgggg tgaaccgcgc cacgatcgcc tcggtagcga tgcctgccgc ggcttacggc
      781 cggcaccgga tcacggtcgc gtcgacgcag tttccgctcg gctacgacgg cgctcggttc
      841 acggtcgtgc cgaacgcgca gcaggccgtc ttctacgtct gcagcggtgc cgacggcacg
      901 ctcgatgcca ccggaaacgg caggggcacg ctgtatcgcc tggcgagcta cgggttcaat
      961 gcggcctatc cggccgcgtg cccggccgtc gcgtcggccg acgtgctcgc gacgcgggta
     1021 cgcacctgct cgttcgtcta cgacccgaac cagggcgcga cccagcagag cggcttcgtg
     1081 tggatggaaa tcgagctcgc gcgcaacggc gagaaggcgc atctggcgat gggcgcgcac
     1141 gtcgccaacg ggccatgagc atgcgccagc gcggcttcgg cgtcatcgcg gcgatcgtcg
     1201 tgctggtcgt gctcgccgtg ctcgccgccg cggtggtgcg cttcggcagc gtggcccagg
     1261 ccacgaacgc gcagaacgta cgctcggcgc gggccatcca ggctgcgcgc gccggcacgg
     1321 attggggtct ctggcaggcc ttcaagggca cgtgggcaag ctgcagcggc gcgagccaga
     1381 ccctggacct gagcgcgagc accggctttc acgtcaccgt gagttgcgac tcgcgcacct
     1441 tcaacgaggg cgagtcggcc ccgggcacgc cgcgcagcgt gcgcatctac acgatcgacg
     1501 cggtggcctg cagcagcgcc gcgtgtcccg acaacgcggc cgcgaccgcg cccaactaca
     1561 tcgagcggcg ttggcaggtg cacgccagcg actaggagat caaggcacgg gattgcggag
     1621 gaagacggat cctcaaccct tcatctgatc cggcaggaag gtgacgatct gcggaaagac
     1681 gtagagcacg acgaccatca gcaccatcag caggaagaac ggaaacgcgg cccgggcgat
     1741 gtagccgatc tcgcgctttg tcatgccctg cagcacgaag aggttgaagc cgaccggcgg
     1801 cgtgacctgc gccatctcga cgacgatgac gatgaagatg ccgaaccaga gcgggtcgat
     1861 gccggccttt tgcaccgtcg gcatgatcac gcccatcgtc agcacgacca tcgagatgcc
     1921 atcgagaaaa cagccgagca cgacatagaa cgcggtcagc gcgaggatca ggccgaactt
     1981 cgagaggccg agcgtcgcga tccattccgc aagatgccgg ggcaggccga tgtagcccat
     2041 gctcagcgtc aggaacgcgg cgccggcgag gatcagcgcg atcatgcagt agagccgcgt
     2101 gccgcccatc agcgcctggc tgaagctctc ccacgtcagc gatccctgca gcgccgacag
     2161 cagcagcgcg ccgacgacgc cgagcccggc cgcttccgtg gcggtcgcaa tgccgctgta
     2221 gatcgagccg agcaccgcgg cgatcagcag cacgaccggg atcaggttgc gcgattcgtg
     2281 gagcttttgc gcgaggctca tcggcgcatc cggcggcgga atcttctcgg cattgaagag
     2341 cgaccaggcg ccgatgtaga gcgagaagat cagcgcgagc agcacgcccg ggatcacgcc
     2401 ggcgatgaag agctgcgaga tcgagacgtc ggcggtgaca ccgtagacga tcatgatgat
     2461 cgagggcgga atcagcaggc cgagcgtgcc ggcgccggcg agcgagccga ccgacatgat
     2521 ctcgggatag ccgcgccggg tcagctccgg caggctcatc ttgccgatcg tcgcgcaggt
     2581 cgccgcgctc gacccggaca ccgcggcgaa gatcgcgcag ccgaccacgt tggtgtgcag
     2641 caaccgcccc ggcaggccct gcacccaggg cgcgaggccg cggaacatgt cctggctcag
     2701 gcgcgtgcga aacaggatct cgcccatcca gatgaagagg ggcagggcgg tcagggtcca
     2761 gctcgacgcc gagccccagg tggtcacggc catcgcgtcg ccggccgggc gcgagctgaa
     2821 gagctgcatg ccgatccagg ccacgcccga gagcgtgagg ccgatccaga cgccgctgcc
     2881 gaggatcagg aaaagcgccg cgatcagcag cgcggtgatc gtgatgtcat tcattgcgca
     2941 aggcttccgc cggttcgatc accacgcgcc ggccgcgcac ctcgaggacc agttcgtcga
     3001 cgaacgcgat cgcgagcacg gcggtgccga tcgccatcga gagctgcggc agccagagcg
     3061 gcgtcgcatc gttgctggtc gacacatcgt ggaaggtgta cgactgccag gagagcttgc
     3121 cgctgtagaa cgccgcgagc gacgccagca gcgccgcggc gaaaagcgac cagatctcaa
     3181 agccgcgccg cgcgccgccg cgcagtgacg cgagcagcaa cgtcacgcgg atgtgctcgc
     3241 cgcgcttcaa cgtatgggcc agcgcgagga agcccgcggc cgccatcatg tagccggcat
     3301 aggcgtcgac gccgggaatg ttgaagtgga actgccgccc ggcgatggac agcatcacca
     3361 tcacgagcaa cagcaccatg aagagcgccg cgagcgcgcc ggcgccttcg tagagcgcat
     3421 cgagcaggcg gcgcatggtc gttcggcccg acgcgccggc catcacatct tcttgtagct
     3481 gtcgatgatc gcctggcctt cggggccggc cttctcgagc cattccttga gcatcgtgtc
     3541 gccgaccttc ttcatgtcgg aggtgagttg cgcgggcggg gccacgatcg tcatgccgtt
     3601 cttcttcagc agatccatgt attcgaggtt cttcgcctgt gagagcgccc agccgcgcac
     3661 ctcggcgtcg gctccagcct tcaacaacgc ggcctgggtc g
//
LOCUS       DASVHM010000451         6099 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1186743, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000451 DASVHM010000000
VERSION     DASVHM010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6099
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1186743"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            43..729
                     /gene="cybH"
                     /locus_tag="VF308_08490"
     CDS             43..729
                     /gene="cybH"
                     /locus_tag="VF308_08490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013124488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HEX7436731.1"
                     /translation="MSTHDSKLFPVYVWEVPVRIWHWVMAGCLLVLACTGYLIGSPLP
                     SMSGEASDHYLFGYIRFAHFTAAYLFAVFFVLRVIWAFIGNRFARELFSVPFSLFHRA
                     WWGGLFGQTRYYLFLDREARPWQGHNPLAAAGMFFMYVLGAIFMILTGFAMYGEGLGM
                     ESWAFKVFSSWVMPLFGYSQNVHTLHHLGMWYLIAFTLVHLYMVVREDICSDETVVST
                     MINGWRVAKR"
     gene            726..1391
                     /locus_tag="VF308_08495"
     CDS             726..1391
                     /locus_tag="VF308_08495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019574240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HEX7436732.1"
                     /translation="MSTVPAPEEAEAPAPRPAVLVLGIGNVLWADEGFGVRAVEALHQ
                     GWRMPANVSLVDGGTQGMYLLDHVCSADRVLVLDAIDYKLAPGTLRLFRDDEVPVWAD
                     RVMSLHQATFQELLSLARVRGRFPEKITLIGVQPDVLDDLGGSLSPLVRARLDEAVAL
                     ALAELFAWGIEAVPRAEAPDEPLGAAALAIHAYEAGRPSATEACRIGDARFMNQVGNG
                     GKR"
     gene            1391..1693
                     /locus_tag="VF308_08500"
     CDS             1391..1693
                     /locus_tag="VF308_08500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013124492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEX7436733.1"
                     /translation="MCIGLPLRVIEPEGSFAWCEADDERERLDMMLVGEQPVGTWVLG
                     FHGAARQVLSEEEAARTRAGRRALAAVLSGDGRIDDFFADLVGREPELPAHLQRGL"
     gene            1693..2166
                     /locus_tag="VF308_08505"
     CDS             1693..2166
                     /locus_tag="VF308_08505"
                     /inference="COORDINATES: protein motif:HMM:NF019092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase"
                     /protein_id="HEX7436734.1"
                     /translation="MNASLAAPASPATLHPLLLRLVRETGAAVLNPETFDAWAEQPGA
                     AMVVFAEDPERYKETLDLAVIVPELHASRARRFRVALLPPSAARALASRYGFAHWPAF
                     VMLRDGRYVGAVDGIRDWDVYIGELDRLLAAPPSRPPTIGIPVTVAGQSAAPSCH"
     gene            2184..3041
                     /locus_tag="VF308_08510"
     CDS             2184..3041
                     /locus_tag="VF308_08510"
                     /inference="COORDINATES: protein motif:HMM:NF016682.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation C-terminal
                     domain-containing protein"
                     /protein_id="HEX7436735.1"
                     /translation="MRAVTIPIRSLIAEPEESIEYMPMPREMMTFEMPCLPEPGADND
                     VAGARDVLETFLGHFDTWLEGGAELPALDLKGLAADSLRVLNETLGEGEVSAIVDAGH
                     EIRIQETVFSGVWREQHFDARGALLHDYLLAAPIPPVVTALARERAAAQLRALELPAG
                     AMNVPALIYELQEAMDRSGPVTPAHVINLTLLPLSPEDTGHIDRVLDGGSVVILSRGF
                     GNCRISSTAARNVWRVQYFNNMQTLILNTIEVIEMPEVAVAAREDLVETRTRLADLTQ
                     WMGDSIAAA"
     gene            3048..3260
                     /locus_tag="VF308_08515"
     CDS             3048..3260
                     /locus_tag="VF308_08515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018904271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HEX7436736.1"
                     /translation="MGDTSEPAGRQAAIGPTTRLECKICWTVYDPAVGDEVWQIPPGT
                     PFSDLPAHWTCPTCSCEKQHFLVLDD"
     gene            3253..3816
                     /gene="hybE"
                     /locus_tag="VF308_08520"
     CDS             3253..3816
                     /gene="hybE"
                     /locus_tag="VF308_08520"
                     /inference="COORDINATES: protein motif:HMM:NF023365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[NiFe]-hydrogenase assembly chaperone HybE"
                     /protein_id="HEX7436737.1"
                     /translation="MTDADPPPADRPSPAGALQDRFRAILQRQMQDMPMLNPVLSVEA
                     LGLRPWSDHWLGILITPWFMNLLLMPRVAAKWHPIAERESRHYVFPAGVFEFIGARDP
                     VLGDYQACSLFSPMFEFADQQGAHDTALAALDALFDGANREPGEVPARRTGLGDTTVV
                     PAPAMAERVLSKRDFLFGLPPRVDRGP"
     gene            3806..4906
                     /locus_tag="VF308_08525"
     CDS             3806..4906
                     /locus_tag="VF308_08525"
                     /inference="COORDINATES: protein motif:HMM:NF012592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEX7436738.1"
                     /translation="MDLEGALRIGLTVNDGRIERIRITSTRPDVARSLLQGRSRAEIQ
                     AAVPLLFSICGRSQAAASELACAAAAGHASTPDTLARCSAAISTEMVRECAWRTLLDW
                     PQWIGEKPAEDAVQGARAALVFQFTAPTDPGANAIAVAALGMAADEWLALRSLSELDR
                     WIDAGETASARFIRQVRDDDAAGASSDPGALEVPLLDGRHHAWMAELCQACDADPGFA
                     RHPTWHGAPAETGALARLQSDPLIGALIRRSASRVPARFMARLRELALLLAGRASAAV
                     GAQAVPSGGGIAWVENARGLLTHQVRLEQDRADLYRIVAPTEWNFHPDGALASALAHA
                     PAADLTGVTKRATRLVHSLDPCVACRVEFDDA"
     gene            4908..5240
                     /gene="hypA"
                     /locus_tag="VF308_08530"
     CDS             4908..5240
                     /gene="hypA"
                     /locus_tag="VF308_08530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008901 - ferredoxin hydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEX7436739.1"
                     /translation="MSLAEGVREIVDETARSNGARRVAMVRLEIGRLAQVEVEAMRFA
                     FDVVKRGSFADTARLEIVETEGTAWCMLCGEAVVIAGRADACPKCARYQLQVTGGDRM
                     RVMEIEIE"
     gene            5266..>6099
                     /gene="hypB"
                     /locus_tag="VF308_08535"
     CDS             5266..>6099
                     /gene="hypB"
                     /locus_tag="VF308_08535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013124499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEX7436740.1"
                     /translation="MCMTCGCGTDEARVEGAEHEHPHTHPDGTTHSHAHEHEHEHEHA
                     AHDHAHDPGASGWHTHADGTAHAHPDAHPHEHGAGHLHYGTGAAGASAPGMTQARMVR
                     IERDILAKNDAVAQRNRAWLAQRGIFALNLVSSLGSGKTTLLVRTIGQLAGLIPVAVI
                     EGDQQTTFDADRIRATGAPAIQINTGKGCHLDAAMVETALGRLDLAEDSVLMVENVGN
                     LVCPAGFDLGEAHKVVVLSVTEGEDKPLKYPDMFHAAALMLLNKVDLLPHLSFDVERC
                     LA"
BASE COUNT          933 a         2136 c         2075 g          955 t
ORIGIN      
        1 agatcacccg ggtgacgatc cgctgagccc acggaggcaa tcatgagcac gcacgacagc
       61 aagctcttcc cggtctacgt ctgggaagtc ccggtccgga tctggcattg ggtgatggca
      121 ggatgcctgc tggtactggc ctgcaccggc tacctgatcg gctcgccgct gccgtccatg
      181 agtggcgagg ccagcgacca ctacctgttc ggctacatcc gcttcgccca cttcacggcg
      241 gcctacctgt tcgcggtgtt cttcgtgttg cgcgtgatct gggccttcat cggcaaccgc
      301 ttcgcgcgcg agctcttctc ggtgccgttc agtctgttcc accgtgcatg gtggggcggc
      361 ctgttcggcc agacccgcta ctacctgttc ctcgaccgcg aggcgcggcc ctggcagggg
      421 cacaacccgc tcgccgcagc gggcatgttc ttcatgtacg tgctgggcgc gatcttcatg
      481 atcctgacgg gcttcgcgat gtacggtgaa gggctcggca tggaaagctg ggccttcaag
      541 gtcttctcgt catgggtcat gcccttgttc ggctacagcc agaacgtgca cacgctgcac
      601 catctgggca tgtggtacct gatcgccttc acgctggtgc acctctacat ggtggtgcgc
      661 gaagacatct gctccgacga gaccgtcgtc agcacgatga tcaacggctg gcgggtggcg
      721 aaacggtgag caccgtgccg gcacccgagg aggctgaagc tccggcgccg cgtcccgccg
      781 tgctggtgct cggcatcggc aacgtgctct gggccgacga gggcttcggt gtgcgggccg
      841 tcgaagcgct gcaccagggc tggcgcatgc cggcgaacgt gtcgctggtc gatggcggca
      901 cgcagggcat gtacctgctc gaccacgtct gctccgccga ccgcgtgctc gtgctcgatg
      961 cgatcgacta caagctggcg ccgggcacgt tgcgcctgtt tcgagacgat gaagtgccgg
     1021 tgtgggccga ccgggtgatg agcctgcacc aggccacgtt ccaggaactg ctgtcgctgg
     1081 cccgggtgcg cggccgcttc cccgagaaga tcacgctgat cggcgtgcag ccggacgtgc
     1141 tcgacgatct cggcggcagc ctcagcccgc tggtgcgcgc ccgcctcgac gaagcggtcg
     1201 cgctcgcgct ggccgagttg ttcgcctggg gcatcgaggc cgtgccgcgt gccgaagcgc
     1261 ccgacgagcc gctcggcgcc gccgcgctgg cgatccatgc ctatgaagcg gggcgcccgt
     1321 cggcgaccga ggcctgccgg atcggcgatg cgcgcttcat gaaccaggtg ggtaacgggg
     1381 ggaagcgctg atgtgcatcg gacttcccct gcgcgtgatc gagcccgagg gcagctttgc
     1441 ctggtgcgaa gccgacgacg aacgcgaacg cctcgacatg atgctggtcg gtgagcaacc
     1501 ggtcggcacc tgggttctgg ggtttcacgg cgcggcgcgc caggtcttga gcgaggaaga
     1561 agcggcccgg acccgggccg ggcgacgggc gctggccgcg gtgctcagcg gcgacggacg
     1621 catcgacgat ttcttcgccg acctggtcgg ccgcgaaccc gaattgccgg cccatcttca
     1681 aagggggctc tgatgaacgc gtcgctcgct gcgccggcca gtccggcgac cttgcatcca
     1741 ctgctcttgc gcctggtccg ggaaaccggc gcagcggttc tcaatcccga gaccttcgac
     1801 gcctgggcgg agcagcccgg cgctgcgatg gtcgtgttcg ccgaggatcc cgaacgctac
     1861 aaggaaacgc tcgacctggc ggtgatcgtg ccggaattgc acgccagccg cgcgcgccgc
     1921 ttccgggtgg cgctgctgcc gccctcggcg gcccgcgccc tggcctcgcg ctacggcttt
     1981 gcgcattggc cggccttcgt gatgctgcgc gatggccgct acgtcggtgc cgtcgacggc
     2041 atccgcgact gggacgtgta catcggcgaa ctcgaccgtc tgctggcggc gccaccgagc
     2101 cgaccgccga cgatcggcat cccggtcacc gtcgccgggc agtcggcagc gccgtcctgc
     2161 cactgacacg aaggagcgca cccatgcgag ccgtgacgat cccgatccgc agcctgatcg
     2221 ccgagcccga ggagtcgatc gaatacatgc cgatgccgcg cgagatgatg accttcgaga
     2281 tgccgtgcct gcccgagccg ggcgcggaca acgacgtcgc gggcgcgcgc gacgtgctcg
     2341 agaccttcct gggacatttc gacacctggc tcgagggcgg cgccgaactg cccgcgctcg
     2401 atctgaaggg cctggccgcc gactcgctgc gcgtgctgaa cgaaacgctc ggcgagggcg
     2461 aagtgtccgc catcgtcgat gcgggccacg agatccggat ccaggagacg gtgttttccg
     2521 gggtctggcg cgagcagcac ttcgacgccc gcggcgcgct gctgcacgac tatctgctcg
     2581 ccgctccgat cccgccggtg gtcactgcgc tggctcgcga acgcgccgcg gcgcagctgc
     2641 gcgccctcga actgccggcc ggcgcgatga atgtgcccgc gctgatctac gaactgcagg
     2701 aggcgatgga ccgcagcggc cccgtcacgc ccgcgcacgt gatcaacctg acgctgctgc
     2761 cgctgtcgcc cgaagacacg ggccacatcg accgggtgct cgacggcggc tcggtcgtca
     2821 tcctgtcgcg cggcttcggc aactgccgca tcagcagcac ggccgcgcgc aacgtctggc
     2881 gggtgcagta cttcaacaac atgcagacgc tgatcctgaa cacgatcgag gtcatcgaga
     2941 tgcccgaggt ggcggtcgcc gcacgcgaag acctggtcga gacgcgcacc cgactcgccg
     3001 acctgacgca gtggatgggc gactcgatcg ccgcggcctg aacgccaatg ggcgacacca
     3061 gcgaaccggc aggcaggcag gccgcgatcg gccccacgac ccggctcgaa tgcaagatct
     3121 gctggaccgt gtacgacccg gccgtgggcg acgaggtctg gcagatcccg cccggaacgc
     3181 ccttttccga tctgcccgcg cactggacct gtccgacctg ctcttgcgag aagcagcact
     3241 tcctggtgct cgatgactga cgccgacccc ccgcccgccg acaggccgtc gcctgccggc
     3301 gcgctgcaag acaggttccg cgccatcctg cagcggcaga tgcaggacat gccgatgctc
     3361 aaccccgtgc tgtcggtcga agcgctcggc ctgcgcccct ggagcgacca ctggctcggt
     3421 atcctgatca cgccctggtt catgaatctg ttgctgatgc cccgcgtggc cgcgaaatgg
     3481 catccgatcg ccgaacgcga gagccggcac tacgtctttc ccgccggcgt gttcgaattc
     3541 atcggcgctc gcgacccggt gcttggcgac taccaggcct gttcgctctt ctcgccgatg
     3601 ttcgagttcg cggatcagca gggcgcacac gacacggccc tggccgcgct cgacgcgctg
     3661 ttcgatgggg ccaaccgcga gcccggcgag gtgcccgcgc ggcgcaccgg gctcggcgac
     3721 acaaccgtcg tcccggcgcc ggcaatggct gagcgtgtgc tcagcaagcg cgacttcctg
     3781 ttcggattgc caccccgggt cgaccgtgga ccttgaaggc gcgttgcgca tcggtctgac
     3841 cgtgaacgac gggcggatcg agcggatccg catcacatcg acacggcccg acgtcgcgcg
     3901 ctccctgctg caggggcgca gccgcgccga gatccaggcc gcggtgccgc tgctgttctc
     3961 gatctgtggc cggtcgcagg ccgcggcgag cgagctcgcc tgcgccgccg ccgccggcca
     4021 cgcgtccaca cccgacacgc tggcgcgctg cagcgccgcg atatccaccg agatggtgcg
     4081 tgaatgtgcc tggcgcacgc tgctcgactg gccgcagtgg atcggcgaga agcccgccga
     4141 agacgcagtc cagggcgcgc gcgccgcgct ggtctttcaa ttcactgcgc cgaccgaccc
     4201 cggcgcgaac gccatcgcgg tggcggcgct cggaatggcc gccgacgagt ggctggcgct
     4261 gcggtccctc tccgagctgg accgctggat cgacgccggc gaaaccgcca gcgcacgctt
     4321 catccgccag gtgcgcgacg acgacgcggc cggcgcgagc agcgatcctg gcgcgctcga
     4381 ggtccctttg ctcgacggcc gacatcacgc ctggatggcc gagctgtgcc aagcctgcga
     4441 tgcagacccc gggttcgccc gccatccgac atggcacggt gcgccggccg agactggcgc
     4501 gctggcacgg ctccaaagcg acccgctgat cggcgcgctg attcgccgct cggcgtcgcg
     4561 cgttccggcc cggttcatgg cccgcctgcg cgagcttgcg ttgctgctgg ccggccgcgc
     4621 ctcggcggca gtcggcgcgc aggccgtgcc gtccggaggc ggcatcgcct gggtcgagaa
     4681 cgcacgcgga ttgctcaccc accaggtccg tctggagcag gaccgcgccg acctttaccg
     4741 catcgtcgcg ccgaccgaat ggaacttcca tcccgacggt gcgctcgcat cagcgctggc
     4801 gcatgcccct gcggccgacc tcactggcgt gacgaagcgc gccacccgtc tggtacattc
     4861 tttggacccc tgcgtggcct gccgtgtcga gttcgacgat gcatgaaatg tccttggcag
     4921 aaggcgttcg cgagatcgtc gacgagacgg cccgctcgaa cggtgcgcgg cgcgtggcga
     4981 tggtgcgtct ggagatcggc cggctggccc aggtcgaggt cgaggcgatg cgctttgcct
     5041 tcgatgtggt caagcgcggg tcgttcgccg acacggcccg gctcgagatc gtcgagaccg
     5101 aaggcacggc ctggtgcatg ctctgtggcg aagcggtggt gatcgccggt cgcgccgatg
     5161 cgtgcccgaa atgcgcgcgc tatcagctgc aggtcaccgg cggcgaccgc atgcgggtga
     5221 tggagatcga gatcgaatga gctcgacaga aacaggagac cgaccatgtg catgacctgc
     5281 ggttgcggaa ccgacgaagc ccgcgtcgag ggcgcggagc acgagcatcc gcacacccac
     5341 cccgacggca cgacgcacag ccacgcgcac gagcacgagc acgagcacga gcatgctgcc
     5401 cacgatcacg cgcacgaccc gggcgccagc ggatggcaca cgcatgccga cggcaccgcg
     5461 cacgcccatc cggatgcgca cccgcacgaa cacggcgccg gccacctcca ctacgggacc
     5521 ggcgcggccg gcgcttccgc gcccggcatg acgcaggcac gcatggtccg gatcgaacgc
     5581 gacatcctcg ccaagaacga cgccgtcgca cagcgcaacc gggcctggct ggcgcagcgc
     5641 ggcatcttcg cgctcaacct ggtctcgagc ctgggctcgg gcaagaccac gctgctggtg
     5701 cgcacgatcg gccaactggc cgggttgatt ccggtcgcgg tgatcgaagg cgaccagcag
     5761 accacgttcg acgccgaccg cattcgcgcc accggcgcgc cggcgatcca aatcaacacc
     5821 ggcaagggct gtcacctcga tgcggcgatg gtcgagacgg cactcggccg cctcgacctc
     5881 gccgaagact cggtgctgat ggtcgagaac gtcggcaacc tcgtctgccc ggccggcttc
     5941 gacctcggcg aggcgcacaa ggtggtcgtg ctctcggtga ccgagggcga ggacaagccg
     6001 ctgaagtacc cggacatgtt ccatgccgcg gcgctgatgt tgctgaacaa ggtcgacctg
     6061 ctgccgcacc tgagcttcga tgtcgaacgc tgtcttgcg
//
LOCUS       DASVHM010000452         3808 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_755183, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000452 DASVHM010000000
VERSION     DASVHM010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3808
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_755183"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            279..3053
                     /gene="mgtA"
                     /locus_tag="VF308_08540"
     CDS             279..3053
                     /gene="mgtA"
                     /locus_tag="VF308_08540"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003808882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015444 - P-type magnesium transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HEX7436741.1"
                     /translation="MIDVLKNWFGGFLLRRRATQHFARRALLDTVGGRARAQGVPERL
                     ARDLLDAAGDDLPAALVRLESHADGLSAPEAAERLTHFGPNEVEHEKPLPWWLHLWHS
                     YKNPFNLLLTVLAVVSYVTEDAKATIVIGTMVVLSTVIRFVQEERSNRAAARLKAMVS
                     NTATVIRRDLGTEAAEVAEKYFDLQLHSRRPPARIEVPIRELVPGDHVVLSAGDMIPA
                     DCRVMSAKDLFVAQAAMTGESLPVEKFADRRGSGEGPLEQSNLVFMGTNVVSGTATAL
                     VVATGNSTYFGTLAARVSAANHAPTAFQAGVNSVSWLLIRFALVMVPVVLLVNGFTKG
                     DWTEAFLFALSVAVGLTPEMLPMIVTSTLARGAVQLSRKKVIVKRLDAIQNFGAMDVL
                     CTDKTGTLTQDKIALERHTDVFGAPSEEVLKFAYLNSHYQTGLKNLLDRAVLEHVELQ
                     TELKLAQDYRKIDEIPFDFERRRMSVVVSERDDHHELICKGAVEEMLAVCTRVQAEAA
                     SGAGAVALDEAMLERVRQFTCRLNEEGLRVVAVAMKEIPANQTTYSVADETGLTLIGY
                     VVFLDPPKDSSAPALKALADHGVDVKVLTGDNELVTARVCRQVGLRADTVLLGPQIER
                     MDDAALAQAVERHALFARLTPLHKERIVRALRGNGHVVGFMGDGINDAPALRAADIGI
                     SVDSAVDIAKEAADIILLEKSLMVLEEGVIGGRRTFSNMLKYIRMTASSNFGNVLSVL
                     VASAFLPFLPMLPLQLLVQNLLYDISQIAIPFDHVDDELVKLPLKWNPGDIGRFMVFF
                     GPISSIFDITTFAVMWFVFGADSGSRQALFQSGWFVVGLLTQTLIVHMIRTPRVPFIE
                     SRAAPALMVMTLAIMAAGIFLPMGPLADYFKLQALPPAYFLWLSGILFGYCVLTTLMK
                     RFYIRRFGWQ"
     gene            complement(3069..>3808)
                     /locus_tag="VF308_08545"
     CDS             complement(3069..>3808)
                     /locus_tag="VF308_08545"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013393972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HEX7436742.1"
                     /translation="HWNESLFTFTCTRGTSLRFESGHFVMVGIMVDGKPLLRAYSIAS
                     AHYEEHLEFFSIKVPNGPLTSRLQHLQVGDKVLVGRKPTGTLVLTDLLPGRHLYLFAT
                     GTGLAPFMSIIRDPDTYDRFERIVLVHGVRKVDELAYADLIAHELPQHDHLGEQVRAQ
                     LVYYPTVTREPFRNQGRLPDLIGNGKLCSDIGLPQIDPTHDRAMICGGPAMLKDMRSV
                     LDALGFVVSAGIGQAGHYVIERAFVER"
BASE COUNT          607 a         1253 c         1298 g          650 t
ORIGIN      
        1 ggcacgcgat cggcgagcat tcaccgcacg gtccccgcga tggggctcct tcaccgcgaa
       61 ggagtccgac catgtgttgc ccgacgatgc cgaaatctcg cccgctcgtg cagggcggcg
      121 ccgcctctct tcccgacggc ggtgaagccg ggcgcgaatc ggcgcgggtc gcagcccatc
      181 agggtctctg gtcgagtcgc cgcgtgcgcg tcctggtgcg tgtgcaggcg gcgctccggt
      241 tgcgggcgcg ctaacccgcg cggaaccggg gttttcgcat gatcgatgtc ttgaaaaact
      301 ggttcggcgg cttccttctg cgccgccggg cgactcagca cttcgcccgc cgcgcgctgc
      361 tggacacggt gggcgggcgc gcccgcgcgc aaggcgtgcc cgaacgcctc gcgcgcgacc
      421 tgctggacgc ggcgggcgac gacctgccgg cggcgctggt gcggctcgag tcgcatgcag
      481 acgggttgag cgcgcccgag gctgccgagc ggctcacaca cttcggcccg aacgaggtcg
      541 agcatgaaaa gcctctgccc tggtggctgc acctgtggca ttcgtacaag aacccgttca
      601 acctgctgct gacggtgctc gccgtcgtct cgtacgtgac cgaggacgcg aaggcgacga
      661 tcgtgatcgg cacgatggtc gtcctcagca cggtcatccg cttcgtgcag gaggagcggt
      721 cgaaccgcgc cgcggcgcgg ctgaaggcca tggtgagcaa caccgccacg gtgatccggc
      781 gcgacctcgg caccgaggcg gccgaggtgg ccgagaagta tttcgacttg cagctgcatt
      841 cgcgccggcc gccggcccgc atcgaggtgc cgattcgcga gctcgtcccg ggcgaccacg
      901 tggtgctttc ggcgggcgac atgattccgg ccgactgccg ggtcatgagt gcgaaggatc
      961 ttttcgtcgc ccaggcggcg atgaccggcg aatccttgcc ggtcgagaag ttcgccgatc
     1021 gtcgcggcag cggtgaaggg ccgctcgagc aaagcaacct cgtcttcatg ggcacgaacg
     1081 tcgtctccgg cacggcgacc gcgctcgtcg tggccaccgg aaacagcacc tatttcggga
     1141 cgctggccgc gcgcgtcagc gccgccaatc acgcgcccac cgcgttccag gccggcgtga
     1201 acagcgtgag ctggctcttg atccggttcg cgctcgtgat ggtgcccgtg gtcctgctcg
     1261 tcaacggctt caccaagggc gactggaccg aagccttcct cttcgcgctc tcggtcgcgg
     1321 tgggtctcac gcccgagatg ctgccgatga tcgtcacctc gacgctggcc aggggcgcgg
     1381 tgcagctgtc gcgcaagaaa gtcatcgtca agcgtctcga cgcgatccag aacttcggcg
     1441 cgatggacgt gctctgcacc gacaagaccg ggacgctgac gcaggacaag atcgccctcg
     1501 aacgccacac cgacgtcttc ggcgcgccgt ccgaggaggt gctgaagttc gcgtacctca
     1561 atagccacta ccagaccggg ctgaagaacc tgctcgaccg ggccgtgctc gagcacgtcg
     1621 aactgcagac cgagctcaaa ctggcgcagg actatcgcaa gatcgacgag attccgttcg
     1681 acttcgagcg gcgccgcatg tcggtcgtgg tgtccgagcg cgacgatcac cacgagctca
     1741 tctgcaaggg cgcggtggaa gagatgctcg cggtgtgcac ccgcgtgcag gccgaagcgg
     1801 cgtcgggcgc cggtgccgtg gcgctcgacg aggcgatgct cgaacgggtg cgccagttca
     1861 cgtgccggct caacgaggag ggcttgcgcg tcgtcgccgt ggcgatgaag gagatcccgg
     1921 caaaccagac gacctattcg gtggccgacg agaccggcct gacgctgatc ggttacgtcg
     1981 tcttcctcga cccgccgaaa gacagcagcg caccggcgct caaggcgctc gccgaccatg
     2041 gggtcgatgt caaggtgctg accggcgaca acgagctggt cacggcgcgc gtgtgccggc
     2101 aggtcggcct gcgcgccgat accgtgctgc tcggtccgca gatcgagcgc atggacgacg
     2161 cggcgctggc gcaggccgtc gagcggcacg cgttgttcgc ccgtctcacg ccgctgcaca
     2221 aggagcgaat cgtgcgcgcc ctgcgcggca acggccatgt ggtcggcttc atgggcgacg
     2281 gcatcaacga cgcgccggcg ctgcgggccg cggacatcgg catctcggtc gactcggccg
     2341 tcgacatcgc gaaggaagcg gccgacatca tcctgctcga aaagagcctc atggtgctgg
     2401 aagagggggt gatcggaggc cgcaggacct tcagcaacat gctcaagtac atccgcatga
     2461 ccgcgagctc caacttcggc aacgtgctct cggtgctggt ggcgagcgcc ttcctgccgt
     2521 tcctgccgat gctgccgctg cagctgctgg tccagaacct cctctacgac atttcgcaga
     2581 tcgccatccc gttcgaccac gtcgacgatg aactggtgaa gctgccgctg aagtggaacc
     2641 cgggcgacat cggccgcttc atggtgttct tcggaccgat cagctcgatc ttcgacatca
     2701 cgacattcgc cgtgatgtgg ttcgtgttcg gcgccgattc cggctcgcgg caggcgctgt
     2761 tccagtcagg ctggttcgtg gtcggtctgc tgacgcagac gctgatcgtg cacatgatcc
     2821 gaacccccag ggtgcccttc atcgaaagcc gcgccgcgcc ggccttgatg gtcatgacgc
     2881 tcgcgatcat ggcggcgggc atcttcctgc ccatgggccc gttggccgac tacttcaagc
     2941 tgcaggcgct gccgccggcg tacttcctgt ggctgtccgg catcctgttc ggctactgcg
     3001 tgctgacgac cttgatgaag cgcttctaca tccggcgctt cggctggcag tgacgctgcc
     3061 gacgcccgtc acctctcgac gaatgcgcgc tcgatgacgt agtggccggc ctggccgatg
     3121 ccggccgaga ccacgaagcc cagcgcgtcg agcaccgagc gcatgtcctt gagcatcgcc
     3181 gggccgccgc agatcatcgc ccggtcgtgc gtcgggtcga tctgcggcaa tccgatgtcg
     3241 ctgcacagct tgccgttgcc gatcaggtcg ggcagccgcc cctggttgcg gaacggctcg
     3301 cgcgtcacgg tcgggtagta gacgagttgc gcgcgcacct gctcgccgag gtggtcgtgc
     3361 tgcggcagtt cgtgcgcgat caggtcggca taggcgagtt cgtcgacctt gcgcacgccg
     3421 tgcaccagca cgatcctttc gaagcggtca taggtgtccg ggtcgcgaat gatgctcatg
     3481 aacggcgcga ggccggtgcc ggtcgcgaag agatagagat ggcggcccgg cagcaggtcg
     3541 gtcagcacca gcgtgccggt gggcttgcgg ccgaccagca ccttgtcgcc gacctgcagg
     3601 tgctgcaggc gcgaggtgag cgggccgttc ggcaccttga tgctgaaaaa ctcgaggtgc
     3661 tcctcgtagt gcgcgctcgc gatcgaatag gcacgcaaca gcggcttgcc gtcgaccatg
     3721 atgccgacca tcacgaagtg gccgctctcg aagcgcaggc tggtgccgcg cgtgcaggtg
     3781 aaggtgaaga gcgattcgtt ccagtgat
//
LOCUS       DASVHM010000453         4695 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1333808, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000453 DASVHM010000000
VERSION     DASVHM010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4695
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1333808"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            111..512
                     /locus_tag="VF308_08550"
     CDS             111..512
                     /locus_tag="VF308_08550"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HEX7436743.1"
                     /translation="MTAIVIDSSYALACMMPDERRPDSMDTVLGEVLLAPFIWPIEIA
                     SAMRNCVRLKRFDVAQAIALATHVTGLDARVAAPWHNEASRYLELALAHELTPYDAIY
                     IDLCLSEHSALATCDRELSLVAARLGIRIHS"
     gene            541..3180
                     /gene="alaS"
                     /locus_tag="VF308_08555"
     CDS             541..3180
                     /gene="alaS"
                     /locus_tag="VF308_08555"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041492808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEX7436744.1"
                     /translation="MTASEIRSTFLKFFESKGHTVVASSPVVPGDDPTLLFTNAGMNQ
                     FKDVFLGYDKRPYVRAATAQKCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFK
                     KDALHYAWELLTEVYKLPPDKLWATVYAEDDEAYDIWRNEIGLPTERIVRIGDNKGAR
                     FASDNFWMMGDTGPCGPCSEIFYDHGPRIPGGPPGSPDEDGDRYIEIWNNVFMQFNRD
                     DAGVMHKLPKPSVDTGMGLERLTAVLQHVHSNYEIDLFVTLLAAAKKVVDAAGAGDCD
                     KDSPSLKVIADHIRACAFTVVDGVIPGNEGRGYVLRRITRRAIRHGYKLGARKPFFHR
                     LVADLAVVMGDAYPELRRDRQRATEVLKQEEERFFHTIANGMEILEVAIAALPPGGAR
                     VLGGDIAFKLHDTFGFPLDLTADVCRERNVAVDTAGFDAAMGRQREQARAAGKFKLAQ
                     GLEYSGGGTTFHGYDALTHDNARVVAVYVDGSAVASARAGDDAVIVLDHTPFYAESGG
                     QVGDAGELRNATSRVIVEDTLKIQAAVFGHEGRVVEGEIRVGDVLDAKVDVERRARTV
                     RNHSATHLMHKALREVLGEHVQQKGSLVNAERTRFDFAHNAPMTEAQIRRVEALVNAE
                     ILENHATTVRVMPIEEAQKLGAMMLFGEKYGDQVRVLDIGTSRELCGGTHVRRSGDIG
                     LFKIVAESGVAAGIRRVEAVTGDNALAYVQVLEGTVHQLAGALKSAPAEMPARVGQVL
                     DQMRHLEKELAALKGRLASSQGDELVAQAVDVKGLKVLAARLEGADARTLRDTLDKLK
                     DKLKTAVIVLAVVDGGRVQLAAGVTSDATAKIKAGDLVNHVASQVGGKGGGKPDMAMA
                     GGTDPSRLAAALASVQSWVAERV"
     gene            3355..3624
                     /locus_tag="VF308_08560"
     CDS             3355..3624
                     /locus_tag="VF308_08560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436745.1"
                     /translation="MTITIRRASPDDADAYARIMGDPAVYGGLMQMPYTDAADWRARL
                     TDLCARGKPDLPLAAELRTARSSERWAMRWRGYIRTRRTSWRLRA"
     gene            complement(4187..>4695)
                     /locus_tag="VF308_08565"
     CDS             complement(4187..>4695)
                     /locus_tag="VF308_08565"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HEX7436746.1"
                     /translation="GERPVFFYPGSSIGNFTPDEALVFLRRIRVQAAGGGLVIGVDLV
                     KPATILEAAYNDPLGVTAAFNLNLLRHLNRLIGSDFRPEAWRHVAFFNAERSRIEMHL
                     EARHDLVVHWPGGERTFHAAERIHTENSCKYTANDFSELLRRAGFGEPTGWSDPNGWF
                     AVFWAPAD"
BASE COUNT          835 a         1562 c         1594 g          704 t
ORIGIN      
        1 gaaatcgagc gcaagcacgg cccgatcacc accgacgaga tcgtgcaatg ggttcgcgag
       61 ggccgcgaag aacgcaccga acgcatcctg aaagccgcga cgcccaagaa atgacggcca
      121 ttgtgatcga cagctcttac gcgttggctt gcatgatgcc cgacgagagg aggccagact
      181 cgatggacac cgttctcggc gaggtccttc tggcgccctt catctggccg atcgaaatcg
      241 ccagtgcaat gcgaaactgc gtgcggctca aacgcttcga cgtggcccag gcgatcgcac
      301 tcgccacgca cgtcacggga ctcgacgccc gcgttgccgc tccctggcac aacgaggcgt
      361 cgcgctattt ggaattggcg ctggcccacg aactcacgcc gtacgacgcg atctacatcg
      421 acctgtgtct cagcgaacac agtgcgctgg cgacctgcga tcgcgagctg tcgcttgtcg
      481 cggcgcggct cggcatccgc atccactcat gaactgccgc gcacagccgc tccatcctcg
      541 atgacagcct ccgaaatccg ttccacgttc ctgaagttct tcgagtcgaa gggtcacacc
      601 gtcgtcgcct cgagcccggt cgtgccgggc gacgacccga cgctgctgtt cacgaacgcc
      661 ggcatgaacc agttcaagga cgtgttcctc ggttacgaca agcggcccta cgtgcgtgcg
      721 gcgacggcgc agaagtgcat ccgcgccggc ggcaagcaca acgatctcga gaacgtcggc
      781 tacacggcac gtcatcacac cttcttcgag atgctcggca acttcagttt cggcgactat
      841 ttcaagaagg acgcgctcca ctacgcctgg gaactgctga ccgaggtcta caagctgccg
      901 cccgacaagc tctgggcgac cgtctacgcc gaggacgacg aggcctacga catctggagg
      961 aacgagatcg gcctgccgac cgagcgcatc gtgcgcatcg gcgacaacaa gggcgcgcgc
     1021 tttgcgtccg acaacttctg gatgatgggt gacacgggcc cgtgcggacc gtgcagcgag
     1081 atcttctacg accacggccc caggatcccg ggtggtccgc cgggctcgcc cgacgaggac
     1141 ggcgaccgct acatcgagat ctggaacaac gtcttcatgc agttcaaccg cgacgacgcc
     1201 ggtgtgatgc acaagctccc caagccgagc gtcgacaccg gcatggggct cgagcgcctc
     1261 accgcggtgc tgcaacatgt gcactcgaac tacgagatcg atctgttcgt caccttgctc
     1321 gcggccgcga agaaggtggt cgatgcggcc ggtgcgggcg attgcgacaa ggacagtccg
     1381 tcgctcaagg tcatcgccga ccacatccgt gcctgcgcct tcacggtcgt cgacggcgtg
     1441 attcccggca acgagggccg cggctacgtg ctgcgccgga tcacgcggcg cgcgatccgc
     1501 catggctaca agctcggtgc gaggaagccc ttcttccacc ggctcgtcgc cgatctcgcc
     1561 gtcgtgatgg gcgacgcgta tcccgagctg cgccgcgatc ggcagcgcgc gaccgaggtg
     1621 ctgaagcagg aagaggaacg cttcttccat accatcgcca acggcatgga aatcctcgaa
     1681 gtcgcgattg cggcgctgcc gcccggcggc gcccgggtac tcggcggcga catcgccttc
     1741 aagctgcacg acactttcgg atttccgctc gacctcaccg ccgacgtgtg ccgcgaacgc
     1801 aacgtggccg tcgacaccgc gggtttcgat gcggcgatgg gccggcagcg cgaacaggcg
     1861 cgcgcggcag gcaagttcaa gctcgcgcag gggctcgagt actcgggtgg cggcaccacc
     1921 tttcacggct acgacgcgct cacgcacgac aacgccaggg tcgtcgcggt ctatgtcgac
     1981 ggcagcgcgg tcgcctcggc gcgcgccggc gacgacgccg tgatcgtgct cgaccacacg
     2041 ccgttctatg ccgagtcggg cgggcaggtc ggcgatgccg gcgagctgcg caacgcgacc
     2101 tcgcgcgtga tcgttgagga caccctcaag atccaggccg cggtgttcgg tcacgaaggc
     2161 cgcgtcgtcg agggcgagat ccgggtcggc gacgtgctcg acgcgaaggt cgacgtcgag
     2221 cgccgcgcga ggacggtccg caaccatagc gcgacccacc tgatgcacaa ggcgctgcgc
     2281 gaggtgctgg gcgagcacgt gcagcagaag ggttcgctcg tcaacgccga gcgcacccgt
     2341 ttcgacttcg cccacaacgc accgatgacc gaggcgcaga tccgccgcgt cgaggccctc
     2401 gtcaacgccg agatcctcga gaaccatgcg acgacggtgc gcgtcatgcc gatcgaggag
     2461 gcgcagaagc tcggcgcgat gatgctgttc ggcgagaagt acggcgacca ggtccgggtg
     2521 ctcgacatcg gcacgagccg cgagctctgc ggcggcacgc acgtgcggcg cagcggcgac
     2581 atcggcctct tcaagatcgt cgccgagagc ggcgtggccg cgggcatccg ccgggtcgag
     2641 gcggtcaccg gggacaacgc gctcgcctat gtgcaggtgc tcgagggtac ggtgcaccag
     2701 ctcgcggggg cgctcaagtc ggcgccggcc gaaatgcccg cccgggtcgg tcaggtgctc
     2761 gaccagatgc ggcacctcga gaaggaactc gcggcgctga aggggcgcct cgcctcgtcg
     2821 cagggtgacg agctggtggc ccaggccgtc gacgtgaagg gcctcaaggt gctcgccgcc
     2881 cggctcgaag gcgccgacgc gcgcaccctg cgcgacacgc tcgacaagtt gaaggacaag
     2941 ctcaagaccg cggtgatagt gctggccgtc gtcgatgggg gcagggtgca actcgcggcg
     3001 ggggtgacga gcgacgccac ggcgaagatc aaggctggcg acctggtcaa ccacgtcgcc
     3061 agccaggtcg gcggcaaggg cggtggcaag cccgacatgg cgatggcggg cggcaccgac
     3121 ccgagccggc tcgctgcggc gctggcttcg gtgcaatcct gggtggcgga gcgcgtgtag
     3181 gccccgatcg gggatttcgc tctgccgcgc ggatggcggg catgcgaccc ttgcgcgtcc
     3241 gctgttgcga aggaaatcgg caagctcgag gcgaccttac tcgagccgaa cgtcgatcgc
     3301 ctcgacaaga ccgaacacaa ggtgcgcatc cagggttgag ccggagtttc ctccatgacg
     3361 atcaccatcc gtcgcgcttc acccgacgat gccgatgcct acgcccgcat catgggcgac
     3421 ccggccgtgt acggcgggtt gatgcagatg ccctacaccg atgcggcgga ctggcgcgca
     3481 cgcctcaccg acctctgcgc ccgcggcaag cccgacctgc cgctcgcggc cgagctgaga
     3541 acggcgaggt cgtcggaacg gtgggccatg cgatggcgcg gctacatccg aacccgccgc
     3601 acatcgtggc ggcttcgggc gtagcggcgt cttgctctga aaggcgagat ccggaatgac
     3661 cgcaagtccg ccgcgcggaa ggccgaagtg cgttacttcc tgcggcggcg aagggcggca
     3721 caaccggcca gacccaaggc gaccaatgcc agcgtgggag tctccggcgc cggcgtgttg
     3781 ctgaacggca ggtccaccta caggaggacc gcgggaccgc cacagcattc gccatagacc
     3841 aggtcgaatg cgaaggtccc cgatggcccg ccataggtcg tggtggtgat gaccggcgcc
     3901 gtgggtccgg gagcggacac ctcagtccgc caatgatgag cgtcaggcca tcgtcatgcg
     3961 tgacgctgaa ggtctgcccg ttggtcacgg tcacgaaacc ggtgaaatcg agaagtgtcc
     4021 cgacaccgcc ggcgtccatc aacgacgtca gcgtgccggc ggtgttctcg actgcgccgg
     4081 tggggcgaac tgccggcaag gcgactggcc gtgtcgacac gtttgtgcgc cgcgtcgcgc
     4141 cgcggcgcca gcgccaccct tcgcgcagcg cgcagtgcgc gcgctctcag tcggccggcg
     4201 cccagaacac cgcgaaccag ccgttcggat cgctccatcc ggtcggctcg ccgaagcctg
     4261 cccggcgcag cagctcgctg aagtcgttcg cggtgtactt gcacgagttc tcggtgtgga
     4321 tgcgctcggc ggcgtggaac gtccgttcgc cgccgggcca atgcacgacg aggtcgtggc
     4381 gcgcctcgag gtgcatttcg atgcgcgaac gctcggcgtt gaagaatgcg acatggcgcc
     4441 acgcctcggg cctgaaatcg ctcccgatca ggcggttcag atggcgcagc aggttgagat
     4501 tgaaggccgc ggtgacaccg agcgggtcgt tataggccgc ctcgagaatc gtggcgggct
     4561 tgaccagatc gacgccgatc acgaggccgc cgccggccgc ctggacgcgg atgcggcgca
     4621 ggaagacgag cgcttcatcg ggcgtgaaat tgccgatgct cgaacccgga tagaagaaga
     4681 cggggcgctc gccga
//
LOCUS       DASVHM010000454         4262 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_320239, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000454 DASVHM010000000
VERSION     DASVHM010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4262
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320239"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..407
                     /locus_tag="VF308_08570"
     CDS             <1..407
                     /locus_tag="VF308_08570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436747.1"
                     /translation="ASLCRALLLDPPILLMDEPFGALDAMTRDEMNIELLRIWGEGRL
                     DAPVGGGAVGRRKTIVFVTHSIPEAVFLADRVVVMTARPGRVAGIHRVDIARPRTVQA
                     RALPAFGRLTLEIYTELTGASVERAAPAAALS"
     gene            417..1970
                     /locus_tag="VF308_08575"
     CDS             417..1970
                     /locus_tag="VF308_08575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase"
                     /protein_id="HEX7436748.1"
                     /translation="MNAALRLKVLDVELFEQPFRLRMPFRFGVITVTQGLQAFARVRV
                     RLDDGREGAGYAAEALGAKWFDKNPALTDEQNIEQLRKAIEIASEAYRAAPFMTAFDL
                     FAEHHRAQLEACAEVDLVPLVASFGPALLDRAVLDAVCRLEGISFWTAMRTNLPGMRS
                     HAIAPDLAGFDFDAFLASLEPAHTIEARHTVGLVDPIVAADQPEGTRVDDGLPETLEE
                     VVTTYGNRFFKLKVSGHLEADLERLIRIAGVLDRVRDPVQISLDGNEQYEDIEAVAAL
                     WSAMEAEPALQRLCASTLFVEQPIKRQVALTRSVHPLARFRPVIIDESDGDLDAFPRA
                     RALGYSGVSSKDCKGFYKSLINLARCRQWNAAGEGGYFMSGEDLTTQAGLSVQQDLAL
                     VSLLGLTHVERNGHHFIDGFAGRPLAETQDFLRAHPDLYHAERGRVRLHIEGGRLRIG
                     SLECAGFGTAVNPDLSTTAPMPKADWPPTREAAWPDEPAAAEPGAPAGAGLEASGADP
                     DAPAEAPRA"
     gene            1967..3388
                     /locus_tag="VF308_08580"
     CDS             1967..3388
                     /locus_tag="VF308_08580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX7436749.1"
                     /translation="MNEYEAYDGLGLAELVRDGETSAAELLDAALLRIAERNPRLNAV
                     VTPLADAARRTIAAGLPEGPFSGVPFLVKELVASVAGAASTAASRLYQHNMATADSEI
                     VARFRRAGLVIAGKTNSPEFGLSPTTESRLYGVTRNPWREELAPGGSSGGSAAAVAAG
                     MVPLAHATDGGGSIRIPASACGLFGLKPTRARISAGPEVGEGLSGLAIQHVISRSVRD
                     SAAMLDAIAGPLPGDPYAAAPPVRPWLDEVSLAPGRLRIAFARTAPTGVPIHPACVAA
                     VEDAARLCASLGHEVEEAAPAFDAHALERGFTTVFGAHVMANIARATGGALPERELVE
                     PLTYAIAERARGLSAADFIVTLHGLHREARRIAAFFEQHDLWLTPTLAQPPLPIGHFE
                     IESDDVDKWIARLAAFIPFTYPFNVTGQPAASVPLYWSEDGLPIGCQFVARYGDEATL
                     FRLAAQLELARPWFDRRPASVHG"
     gene            3551..>4262
                     /locus_tag="VF308_08585"
     CDS             3551..>4262
                     /locus_tag="VF308_08585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007853080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7436750.1"
                     /translation="MTFAPVPALPFKRVLMTGAAGGLGRELRPRLKRRCEILRLSDIA
                     DLGSAAPGEELVVAALEEPDAVLRLLQGVDAVVHLGGVSVEGPFEPILQANIVGVYNL
                     YEAARRHGVKRIVFASSNHVTGFYRQDEVIDPLSPMRPDGYYGISKAFGENLSRFYFD
                     RYAIETVCLRIGSSFPEPKDRRMLATWLSYDDLERLVVASLTAPLVGHSVVYGMSDNR
                     TIWWDNTSAAHLGYRPQDS"
BASE COUNT          609 a         1527 c         1436 g          690 t
ORIGIN      
        1 gcgcgtcgct gtgtcgggcg ttgctgctcg accccccgat cctgctgatg gacgaaccgt
       61 tcggcgctct cgacgcgatg acgcgcgacg agatgaacat cgaactgctg cgaatctggg
      121 gcgaaggccg gctcgacgcg ccggtcggcg gcggcgcggt cgggcggcgc aagaccatcg
      181 tcttcgtcac ccattcgatc ccggaggcgg tattcctcgc tgatcgcgtc gtcgtgatga
      241 ccgcgcgccc gggccgcgtt gccggcatcc accgcgtcga cattgcgcgc ccgcgcaccg
      301 tgcaggcgcg cgcgctgccc gcgttcgggc gcctcacgct cgagatctac accgaactca
      361 ccggtgcgtc ggtcgagcgt gcggcgcccg ccgccgcgct gtcgtaaagg ggccgcatga
      421 acgcagcgct tcgcctcaag gttctcgacg tcgaactgtt cgagcagccg ttccggctac
      481 gcatgccgtt tcgcttcggt gtcatcacgg tcacgcaggg cctgcaggcg ttcgcgcggg
      541 ttcgggtgag gctcgatgac ggccgtgaag gcgcgggcta cgccgccgaa gcgctcggcg
      601 cgaagtggtt cgacaagaac ccggcgttga ccgacgagca gaacatcgaa cagctgcgca
      661 aggcgatcga gatcgcctcc gaggcgtatc gcgcggcgcc tttcatgacg gcgttcgacc
      721 tgttcgccga gcaccaccgc gcgcagctcg aggcctgcgc cgaggtcgat ctcgtgccgc
      781 tggtcgcgag cttcggtccg gcgctgctcg accgcgcggt gctcgacgcg gtgtgccgcc
      841 tcgagggcat ctcgttctgg acggcgatgc ggacgaacct gccgggcatg cgcagccatg
      901 cgatcgcgcc cgacctcgcc ggcttcgatt tcgacgcctt cctcgcgagc ctcgagccgg
      961 cgcacacgat cgaggccagg cacaccgtcg gtctcgtcga tccgatcgtg gccgccgacc
     1021 agcccgaggg cacgcgggtc gacgacggcc tgcccgaaac gctcgaagaa gtcgtcacga
     1081 cctatggcaa ccgcttcttc aagctcaagg tctcgggcca tctcgaggcc gacctggagc
     1141 ggctcatccg catcgccggc gtcctcgacc gggtccgcga cccggtgcag atttcgctcg
     1201 acggcaacga gcaatacgag gacatcgagg cggtcgcggc gctgtggagc gcgatggaag
     1261 ccgagcccgc gctgcagcgc ctctgcgcct cgacgctctt cgtcgagcag ccgatcaagc
     1321 gccaggtcgc gctgacgcgc agcgtgcatc cgctggcgcg gttccggccg gtgatcatcg
     1381 acgaatcgga cggcgatctc gacgcgtttc cacgcgcgcg cgcgctcggc tattcgggcg
     1441 tctcctcgaa ggattgcaag ggcttttaca agtcgctgat caacctcgcg cgctgtcgcc
     1501 agtggaacgc ggccggcgag ggcggctatt tcatgtcggg cgaagacctg acgacgcagg
     1561 ccggcctttc ggtccagcag gatctggccc tcgtcagtct gctcggcctc acgcacgtgg
     1621 agcgcaacgg ccatcatttt atagacggct tcgccggccg cccgctcgcc gagacccagg
     1681 atttcctgcg cgcgcacccg gacctctatc acgccgaacg cggccgggtg cgcctgcaca
     1741 tcgagggcgg gcggctgcgg atcggctcgc tcgaatgtgc gggcttcggc acggcggtga
     1801 accccgacct gtcgacgacg gcgccgatgc ccaaggccga ttggcccccg acgcgcgagg
     1861 cggcatggcc cgacgagccc gccgctgccg agcccggtgc gccggccggc gcgggcctcg
     1921 aagcctccgg tgcggatccg gacgcacctg ccgaagcgcc ccgcgcatga acgagtacga
     1981 agcttacgac gggctcggcc tggccgaact ggtgcgcgat ggcgagacct ccgcggccga
     2041 gttgctcgac gccgcgctgc tgcgcatcgc cgagcgcaat ccgcggctca acgccgtcgt
     2101 cacgcccctc gccgacgcgg cgcgccgaac catcgccgcc ggccttcccg aagggccgtt
     2161 cagcggcgtg ccgtttctgg tcaaggaact ggtggcgtcg gtggcgggcg cggcgagcac
     2221 ggcggcttcg cgcctctacc agcacaacat ggccacggca gacagcgaga tcgtggcgcg
     2281 ctttcgccgt gccggtctcg tcatcgcggg caagacgaat tcccccgagt tcggtctctc
     2341 gcccacgacc gagtcgcgcc tgtacggcgt gacgcgcaat ccctggcgcg aggagctcgc
     2401 tcccggcggc tcgagtggcg gctcggccgc ggccgtggcg gccggcatgg tcccgctcgc
     2461 gcacgcgacc gatgggggag gttcgatccg cattccggcg tcggcctgcg gcctcttcgg
     2521 tctcaagccg acacgggccc gcatcagcgc cggtccggag gtcggcgaag gactgagcgg
     2581 cctggcgatt cagcacgtga tctcgcgcag tgtgcgcgac agtgccgcga tgctcgatgc
     2641 gatcgccggg ccgttgccgg gcgaccccta tgccgcggcg ccgccggtgc ggccctggct
     2701 cgacgaggtg tcgctcgctc cggggcggct gcgcatcgcc ttcgcgcgca ccgcaccgac
     2761 cggggtcccg atccatccgg cgtgcgtcgc cgcggtcgag gacgccgcgc gcctgtgtgc
     2821 gtcgctcggc catgaggtcg aggaagccgc gccggcgttc gacgcgcacg cgctcgagcg
     2881 cggctttacg acggtgttcg gcgcccacgt catggccaac atcgcgcgcg cgaccggtgg
     2941 cgcgctgccc gagcgtgagc tggtcgagcc gctcacctac gcgatcgccg agcgcgcccg
     3001 cggcctcagc gccgccgact tcatcgtcac gctgcatggc ctgcatcgtg aggcgcgccg
     3061 gatcgcggcc ttcttcgagc agcacgactt gtggctgacg cccacgctgg cgcagccgcc
     3121 gctgccgatc ggtcatttcg agatcgaatc ggacgacgtc gacaaatgga tcgcacgcct
     3181 cgccgctttc ataccgttca cctatccgtt caacgtcacc ggccagccgg ccgcctcggt
     3241 gccgctctac tggagtgaag acggcctgcc gatcggctgc cagttcgtgg cgcgctatgg
     3301 cgacgaggcg acgctgttcc ggcttgcggc gcagctcgag ctggcgcggc cgtggttcga
     3361 ccggcggccc gcgtcagtcc acggctgaga agacggtgta cggcgcgcgc gcgttcatcg
     3421 gagaatcacc tcgatctcgt cagtcatcgt ataactagcc gtcgagtcac ccaggatcgg
     3481 cggtgacatt tggcaacggg gtctttccga tcagcccaga aatgtgcgcg atttcagccc
     3541 cgacccgttc atgactttcg ctccggttcc cgccctgccc ttcaagcgcg tcctgatgac
     3601 cggcgccgcc ggcggtctcg gccgcgaact ccgcccgcgc ctcaagcgcc ggtgcgaaat
     3661 cctgcgtctc agtgacatcg ccgatctggg ctccgccgcg cctggcgagg aactggttgt
     3721 ggcagcgctc gaggagcccg atgcagtgtt gcgattgctc cagggcgtcg atgccgtggt
     3781 ccacctcggc ggcgtctccg tcgagggccc gttcgagccg atcctgcagg ccaacatcgt
     3841 cggtgtctac aacctctacg aagcggcgcg ccgccacggc gtgaagcgga tcgtgttcgc
     3901 gagttcgaac catgtgacgg gcttctatcg ccaggacgaa gtgatcgacc cactcagccc
     3961 gatgcgcccc gacggctact acggcatcag caaggctttc ggcgagaacc tgtcgcgctt
     4021 ctatttcgat cgctacgcca tcgagaccgt gtgcctgcgc atcggctcgt cgttccccga
     4081 gccgaaggac cgccgcatgc tcgccacctg gctcagctac gacgacctcg agcgcctcgt
     4141 cgtcgcgagt ctcaccgcgc cgctggtcgg ccacagcgtc gtctacggca tgtcggacaa
     4201 ccggacgatc tggtgggaca acacctcggc cgcgcacctc ggctaccgcc cgcaggacag
     4261 tt
//
LOCUS       DASVHM010000455         3521 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_176484, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000455 DASVHM010000000
VERSION     DASVHM010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3521
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176484"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1328
                     /locus_tag="VF308_08590"
     CDS             <1..1328
                     /locus_tag="VF308_08590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011807003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX7436751.1"
                     /translation="DWGISRQRYWGTPIPIVHCAACGVVPVPEKDLPVVLPEDLIPDG
                     SGSPLAKSTAFLQCACPKCGKPAHRETDTMDTFVDSSWYFMRYCDPRLDDAMVGAGTK
                     YWMPMDQYIGGIEHAILHLLYARFWTMVMRDLKLVSIDEPFTRLLTQGMVLNHIYSRA
                     TEQGGVDYFWPEDVEPSVDGTHAILKSDGSAVAYEGLGTMSKSKNNGVDPQQLIDRYG
                     ADTARLFVMFASPPEQTLEWNDAGVEGANRFLRRVWNFAAKNAALLKEAPSKPLHGDV
                     AKTMRFEIHSVLRQVSYDYERMQYNTVVSGAMKLLNALEGAKDLASPGATAALHEGYG
                     ILLRVLYPACPHTTWVLWNELGYAAIHGDLLDAPWPQVDEAALVQDEIELMLQVNGKL
                     RGAIRVPAGASHQAIESAALASPDFLRFSKGQPIRKVIVVPGRLVNVVL"
     gene            1328..1819
                     /gene="lptE"
                     /locus_tag="VF308_08595"
     CDS             1328..1819
                     /gene="lptE"
                     /locus_tag="VF308_08595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019576987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HEX7436752.1"
                     /translation="MPSRRAVVAVLAGGLAGCGFELKRAPELRFRTLLLAGFGVRSPL
                     AAELRRSVNASTTTLVVDAAAQAQVVLEALTDAREKSVVASTATGQVTEYQLRERFRF
                     RLRTIAGKELIPATEIVQSRDMSYTESAALAKEQEEAILYRAMETDIASQVMRRLASV
                     QVL"
     gene            1828..2940
                     /gene="holA"
                     /locus_tag="VF308_08600"
     CDS             1828..2940
                     /gene="holA"
                     /locus_tag="VF308_08600"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEX7436753.1"
                     /translation="MQVRADQLDAHLRKGVRSLYTVWGDEALLAQEAGDAIRAAARAA
                     GCTERQVHVVAGNHFDWSSLLGASQALSLFAERQLIEIRIPSGKPGKEGSEALQRYCE
                     TAASKLADDVVTLVQLPKLDRAQQSSAWFAALEGAGVTVRVDPIERKALPQWIAQRLA
                     AQGQRVAAAETGQRTLAFFADRVEGNLLAAHQEVQKLGLLYPPGELGFEQVEAAVLNV
                     ARYDVFKLGEAVLAGQVARALRMLDGLHAEGEAAVLVHWTLAEDIRGLKRVKDAMASG
                     KPLPLALREARAWGAKERLFERAVVVASDTALAELLAAAQVCDGLVKGLRHPDWPIDA
                     WEGLERLVLMVCERIGAGAGSTRAAAASAPRLALMP"
     gene            complement(2937..3428)
                     /locus_tag="VF308_08605"
     CDS             complement(2937..3428)
                     /locus_tag="VF308_08605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019043153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEX7436754.1"
                     /translation="MNRFESEVAVLAEALRARGAMLATAESCTGGMIAAACTALAGSS
                     EWFERGFVTYSNAAKTEMLGVGPALIAAHGAVSAEVACAMAEGALARSHATWSVAVTG
                     IAGPSGATPGKPVGTVWLALAGKGLAARAELLQLSGGRASIREQTVRRALQRLIAATA
                     AQA"
     gene            complement(3425..>3521)
                     /locus_tag="VF308_08610"
     CDS             complement(3425..>3521)
                     /locus_tag="VF308_08610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019655651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEX7436755.1"
                     /translation="PIGWSQGFAIMFDDLVAALCTLLVIALWRAF"
BASE COUNT          568 a         1238 c         1204 g          511 t
ORIGIN      
        1 gcgactgggg catcagccgc cagcgctact ggggcacgcc gatcccgatc gtccactgcg
       61 ccgcatgcgg cgtcgtgccg gtgccggaga aggatctgcc ggtcgtgctg cccgaagacc
      121 tgatccccga cggcagcggc agcccgctcg cgaagagcac cgccttcctg caatgcgcgt
      181 gtccgaagtg cggcaagccc gcgcaccgcg agacggacac gatggacacc ttcgtcgaca
      241 gctcgtggta cttcatgcgc tactgcgacc cgcgcctcga cgacgcgatg gtcggcgccg
      301 gcacgaagta ctggatgccg atggaccagt acatcggcgg catcgagcat gcgatcctgc
      361 acctgctcta cgcgcgcttc tggaccatgg tgatgcgcga cctgaagctg gtctcgatcg
      421 acgagccgtt cacccggctg ctgacgcagg gcatggtgct caaccacatc tactcgaggg
      481 ccaccgagca gggcggcgtc gactacttct ggcccgaaga cgtcgaaccg agcgtcgacg
      541 gcacgcacgc gatcctcaag agcgatggtt ccgccgtggc ctacgaaggc ctcggcacga
      601 tgagcaagag caagaacaac ggcgtcgacc cgcagcagct gatcgaccgc tacggcgccg
      661 ataccgcgcg gctcttcgtc atgttcgcgt cgccgcccga gcagaccctc gaatggaacg
      721 acgccggcgt cgagggcgcg aaccggttcc tgcgccgggt ctggaacttc gccgcgaaga
      781 acgcggcgct gctgaaggag gcgccgtcga agccgttgca cggcgacgtt gcgaagacga
      841 tgcgcttcga gatccacagc gtgctgcgcc aggtcagcta cgactacgag cgcatgcagt
      901 acaacaccgt cgtctccggc gcgatgaagc tgctcaacgc gctcgaaggc gcaaaggatc
      961 tcgccagccc gggtgccacc gccgcgctgc acgaaggcta cggcatcctg ctgcgcgtgc
     1021 tgtacccggc ctgcccgcac acgacctggg tgctgtggaa cgagctcggc tatgcggcga
     1081 ttcatggcga cctgctcgac gcgccctggc cgcaggtcga cgaagcggcg ctggtgcagg
     1141 acgaaatcga gctgatgctc caggtcaacg gcaagctgcg cggtgcgatt cgcgtcccgg
     1201 ccggagctag ccaccaggcg atcgaatcgg ccgcgttggc cagccccgat ttcctgcgct
     1261 tctcgaaagg ccagccgatc cgcaaggtga tcgtggtgcc gggccgactc gtcaacgtcg
     1321 tcctctgatg ccgagccgcc gcgccgtggt cgccgtcctc gcgggcggtc tggccggctg
     1381 cgggttcgag ttgaagcgcg cccccgagct gcgctttcgc acgttgctgc tcgccggctt
     1441 cggcgtgcgc tcgccgctcg ctgccgaatt gcgcaggagc gtcaatgcca gcaccacgac
     1501 gctggtcgtc gacgccgcgg cacaggcgca ggtcgtcctg gaggcgctga ccgatgcgcg
     1561 cgagaagagc gtcgtcgcct cgaccgcgac cggtcaggtc acggagtacc agttgcgcga
     1621 gcgctttcga tttcgactgc gcaccatcgc cggcaaggaa ttgatcccgg cgaccgagat
     1681 cgtgcagagc cgcgacatga gctacaccga aagcgcagcg ctggcgaagg aacaggaaga
     1741 agcgatcctc taccgcgcga tggagaccga catcgcctcg caggtgatgc ggcgcctggc
     1801 gtcagtgcag gtgctgtaga gccttccatg caggtgcgcg cagaccagct cgacgcccat
     1861 ctccgcaagg gcgtgcgttc gctctacacc gtgtggggcg acgaggcgct gctggcccag
     1921 gaagcgggcg acgcgatccg cgcggccgcg cgcgccgccg gctgcaccga gcgccaggtc
     1981 catgtcgtcg ccggcaatca tttcgactgg agcagcctgc tcggcgcgtc gcaggcgctg
     2041 agcctgttcg ccgaacgcca gctgatcgag atccggattc cctctggcaa gcccggcaag
     2101 gaaggctccg aggcgctgca gcgctattgc gaaacggcgg cttcgaagct cgccgacgac
     2161 gtggtcacgc tggtgcagtt gcccaaactc gaccgcgccc agcagtcgag cgcctggttc
     2221 gccgcgctcg agggcgccgg cgtgacggtg cgcgtcgatc cgatcgagcg caaggctttg
     2281 ccgcagtgga tcgcccagcg cctcgccgcg cagggacagc gcgtcgccgc ggctgagacc
     2341 ggtcagcgca cgctcgcgtt cttcgccgac cgggtcgagg gcaacctgct tgccgcgcac
     2401 caggaggtgc aaaagctcgg cctgctctat ccgcccggcg aactcggctt cgaacaggtc
     2461 gaagcggcgg tcctgaacgt ggcgcgctac gacgtcttca agctcggcga ggccgtgctc
     2521 gcaggccagg tcgcccgggc cctgcgcatg ctcgacggcc tgcatgccga aggcgaggcc
     2581 gcggtgctcg tgcactggac gctcgccgag gacatccgcg ggttgaagcg cgtgaaggac
     2641 gccatggcct cgggcaagcc actgccgctg gccctgcgcg aagcgcgcgc ctggggcgcg
     2701 aaggaacgtc ttttcgagcg ggcggtcgtg gtggcgagcg acacggccct ggccgaattg
     2761 ctggccgcgg cccaagtctg cgacggactc gtcaagggtc tgcgccatcc cgactggccg
     2821 atcgatgcct gggaagggct cgagcggctg gtcctgatgg tctgcgagcg catcggggcc
     2881 ggcgcgggga gcacccgcgc cgccgccgcc tcggcgcccc ggctcgcgct catgccctaa
     2941 gcctgcgccg cggtcgcggc gatgagccgc tgcaacgccc ggcgcaccgt ctgttcgcga
     3001 atcgacgcgc ggcctccgct cagctgcagg agttcggctc tcgcggcgag accctttccg
     3061 gcgagcgcca gccagacggt gccgaccggc ttgcccggtg tcgcgcccga aggtccggca
     3121 atcccggtca ccgcgacgga ccaggtcgca tgcgaacggg ccagcgcccc ttccgccatc
     3181 gcgcacgcca cttcggcgct gaccgcgccg tgcgccgcga tcagggccgg cccgacgccg
     3241 agcatctcgg tcttggccgc gttcgaatag gtcacgaagc cgcgctcgaa ccactcgctc
     3301 gaaccggcca gcgcggtgca ggcggcggcg atcatcccgc cggtgcacga ttcggccgtg
     3361 gccagcatcg cgccgcgtgc gcgcagcgct tcggccagca ccgcgacctc ggactcgaac
     3421 cggttcaaaa cgccctccac agcgcgatga cgagcagcgt gcagagcgcc gcgacgaggt
     3481 cgtcgaacat gatcgcgaaa ccctgcgacc aaccgatcgg c
//
LOCUS       DASVHM010000456         1759 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_537997, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000456 DASVHM010000000
VERSION     DASVHM010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537997"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..560)
                     /locus_tag="VF308_08615"
     CDS             complement(<1..560)
                     /locus_tag="VF308_08615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436756.1"
                     /translation="MLKRLAIAAALAASASAGFAQTVIGGATLIDTATVISGTVTPTT
                     YLTFDHGSNGTTGNADGTTYSILSPGLTPSVAMSTADHQWAQFDDPIVMHSVAALSGV
                     IAIPAIDHGWTLTNSGPGSEPFEPFEFRIWGCATSTFSSTACELGHITKVWTKGVDDV
                     GAMKNADDWTSQWNFTGSYNYFAITSG"
     gene            721..>1759
                     /gene="radA"
                     /locus_tag="VF308_08620"
     CDS             721..>1759
                     /gene="radA"
                     /locus_tag="VF308_08620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019700820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEX7436757.1"
                     /translation="MAKEKSIYSCTECGATSPKWLGKCPSCGAWNTLVESVAETGARP
                     RYAAGRGLLPAAAVATLAEIDATDAERQPTGIEEFDRALGGGIVAGGVVLIGGDPGIG
                     KSTLLLQALDALARTMKVLYVTGEESGAQVALRSRRLGLGASPVRVLAEIQLEKILAT
                     LEVEQPAVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRLAKASGITIILVGHVTK
                     DGALAGPRVMEHIVDTVLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVS
                     NPSAIFLSTHGEPVPGSCVLVTLEGTRPMLVEVQALVDAGGPSPRRLSVGLERDRLAM
                     MLAVLHRHAGIA"
BASE COUNT          264 a          575 c          643 g          277 t
ORIGIN      
        1 cccgacgtga tggcgaagta gttgtaggag cccgtgaagt tccactgcga cgtccagtcg
       61 tcggcgttct tcatcgcgcc gacatcgtcg acgcccttgg tccagacctt ggtgatgtga
      121 cccagctcgc aggcggtgct cgagaacgtc gacgtggcgc agccccagat ccggaactcg
      181 aacggctcga acggctccga gcccggtccc gagttcgtca gcgtccagcc gtggtcgatc
      241 gccgggatgg cgatcacgcc cgagagggcg gccacgctgt gcatgacgat gggatcgtcg
      301 aactgagccc actggtggtc tgccgtcgac atggcgacgc tgggggtgag cccaggcgac
      361 aggatgctgt aggtcgtgcc gtcggcgttg cctgtcgttc cgttgctgcc gtggtcgaag
      421 gtcagatagg tggtcggcgt cacggtgccg ctgatcaccg tcgcggtgtc gatcagcgtc
      481 gcgccgccga tgaccgtctg ggcgaatccg gcgctcgccg acgcggctaa cgccgcggcg
      541 atggcaagtc tcttcaacat gggaacctcc tggagcttcg aactgaaacg cggctccact
      601 ggcgggagct ggggcagtga atttaggctt cgggtggacc gtccgctacc cctggtcagg
      661 ggtggggtaa acccgatgtg ggacctgccg gttcgccgcg gggcgcgccg acaattggca
      721 atggccaagg agaagtcgat ctacagctgc accgaatgcg gtgcgacgag cccgaagtgg
      781 ctcggcaagt gccccagctg cggcgcctgg aacacgctcg tcgagtcggt cgccgagacc
      841 ggcgccaggc cacgctatgc cgccggccgc ggcctgctgc cagccgcggc ggtggcgacg
      901 ctcgccgaga tcgatgccac cgacgccgag cgccagccga ccggcatcga ggagttcgac
      961 cgggcgctgg gcggcggaat cgtcgccggc ggcgtcgtcc tgatcggcgg cgatccgggg
     1021 atcggcaagt cgacgttgct gctgcaggcg ctcgacgcgc tggcgcggac gatgaaggtg
     1081 ctctacgtca ccggcgagga aagcggcgcc caggtcgcgc tgcgctcgcg ccggctcggc
     1141 ctcggcgcga gcccggtgcg cgtcctcgcc gagatccagc tcgagaagat cctggcgacg
     1201 ctcgaggtcg agcagccggc ggtcgcggtg atcgattcga tccagaccgt ctacagcgag
     1261 gcgctgacgt cggcgccggg ctcggtggcg caggtgcgcg agtgcgcggc gcagctgacg
     1321 cggctggcca aggcgagcgg gatcacgatc atcctcgtcg gccacgtcac caaggacggc
     1381 gccttggccg ggccgcgcgt gatggagcac atcgtcgaca ccgtgctcta tttcgagggc
     1441 gacacgcact cgagctttcg cctcgtccgg gcgatcaaga accgcttcgg cgcggtcaac
     1501 gagatcggcg tcttcgcgat gaccgagaaa ggcctgaagg gcgtcagcaa cccgagcgcg
     1561 atcttcctgt cgacgcacgg cgagccggtg ccggggtcgt gcgtcctcgt cacgctcgag
     1621 ggcacccggc cgatgctggt cgaggtgcag gcgctcgtcg atgccggcgg gccgagcccg
     1681 cggcgcctct cggtcggcct cgagcgcgac cgcttggcga tgatgctggc ggtgctgcat
     1741 cgccacgccg gcatcgccg
//
LOCUS       DASVHM010000457         2675 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_611521, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000457 DASVHM010000000
VERSION     DASVHM010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_611521"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..107)
                     /locus_tag="VF308_08625"
     CDS             complement(<1..107)
                     /locus_tag="VF308_08625"
                     /inference="COORDINATES: protein motif:HMM:NF013611.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEX7436758.1"
                     /translation="MCLAIPVEVVELLGESMAIVDLDGIRKEISLELVDG"
     gene            complement(111..2441)
                     /gene="hypF"
                     /locus_tag="VF308_08630"
     CDS             complement(111..2441)
                     /gene="hypF"
                     /locus_tag="VF308_08630"
                     /EC_number="6.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008810858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003998 - acylphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEX7436759.1"
                     /translation="MLTLTDVARRAIRARGAVQGVGFRPFVFRLAHELGLAGWVFNDA
                     DGVSIEVQGPAFALDSFEQRLRTDAPPLARVETLRATARARVGREEGFRILASRAGKV
                     TTSIPPDTATCDECLAELFDPADRRHRYAFINCTQCGPRYTLTRALPYDRAQTSMAAF
                     PQCPQCLREYTDPLHRRFHAEPNACPVCGPALALVDARNQPVPGDPIAATLGLLRAGR
                     IVAIKGLGGFHLACDARNAGAVALLRERKQREEKPFAVMAANLASAARWVRAGAAEQA
                     LLQSCERPIVLLQMLHGCAERLAGVAPGLNVAGVMLPCTPIQYLLFHEAADRPAGTDW
                     LHDAHDLLLVMTSANPGGEPLVIGNDEALGRLDGIADALLLHDRDIVARCDDSVLRQG
                     TTGAAQFIRRARGYTPRPVKLPRTGPSVLATGAWLKNTICITRGDEAFLSPHVGDLDN
                     AATCGALVEMADHLCAVLDVKAQAVAHDLHPDFFSTRFALEFAASRSLPAHAVQHHHA
                     HVAAVAAEHGVDGPLLGLALDGIGLGEDSGAWGGELLLVDGATFRRLGHLAPIAMPGG
                     DAAAREPWRMAAAALHRIGRGAQIEQRFSARPAAAAVARMLARDLRCPPTTSMGRWFD
                     AAAALLRVRETSAYEGQAPMLLEALASTGESFASVAELSDLVPIQPDGTLDPTLLITR
                     LADEGDARRGAALFHHAIADGLARWVAAATESTGVRVVALGGGCFLNALLTALLAPRL
                     AALDIRVLEARQAPPNDGGIALGQAWVAICRQNAGE"
     gene            complement(2454..>2675)
                     /locus_tag="VF308_08635"
     CDS             complement(2454..>2675)
                     /locus_tag="VF308_08635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436760.1"
                     /translation="EGMHDWLTWIERGARAARERRLDQADALKRAAQLNALERMAQAA
                     APQQHPDPVDALQRRIAELEAQLASLKLP"
BASE COUNT          391 a          919 c          992 g          373 t
ORIGIN      
        1 ccgtcgacga gttcgagcga gatctccttg cggatgccgt ccaggtcgac gatcgccatc
       61 gattcgccca gcagttcgac cacctcgacc ggaatggcaa gacacatcgt tcactctcct
      121 gcgttctgtc tgcagatcgc aacccaggcc tggccgagcg cgatgccgcc gtcgttgggc
      181 ggcgcctggc gggcctcgag aacgcgaatg tcgagcgccg ccaagcgtgg cgccagcagc
      241 gccgtgagca atgcgttcag gaagcaacca ccgcccagcg cgaccacgcg cacgccggtc
      301 gattctgtgg ccgcggcgac ccagcgggca agcccgtcgg cgatggcatg gtgaaacagc
      361 gctgccccgc gtcgcgcgtc gccttcatcg gccaggcgtg tgatcagcag ggtcgggtcg
      421 agcgtcccgt cgggctggat gggtaccagg tcgctcagct cggcgaccga agcgaaggat
      481 tcgcccgtgg aggccagcgc ttcgagcagc atcggggcct ggccttcgta ggcgctggtt
      541 tcgcgcacgc gcagcagcgc ggcggcggca tcgaaccagc ggcccatgct ggtggtgggt
      601 gggcagcgca ggtcgcgcgc cagcattcga gccacggcgg cggcagcggg ccgggcgctg
      661 aagcgctgct cgatctgggc gccacggccg atgcggtgca acgcggcagc cgccatgcgc
      721 cagggctcgc gcgcggcggc gtcaccgccg ggcatggcga tcggtgccag atggccgagc
      781 cgcctgaacg ttgcgccgtc gacgagcagc aactcgccgc cccaggcgcc actatcctca
      841 ccgaggccga tgccgtcaag cgccaggccg agcagcgggc cgtcgacgcc gtgctcggcc
      901 gccaccgccg cgacatgcgc gtgatggtgc tgcaccgcgt gcgcgggcag cgagcggctc
      961 gccgcgaact ctagcgcaaa ccgggtgctg aagaagtcgg ggtgcaggtc gtgggccacg
     1021 gcctgcgcct tcacgtcgag caccgcgcac aggtggtccg ccatctcgac cagcgcgccg
     1081 caggtggccg cgttgtcgag gtcgccgaca tgcggcgaca ggaacgcctc gtcgccacgc
     1141 gtgatgcaga tcgtgttctt cagccaggcg ccggtggcga gcaccgacgg accggtccgt
     1201 ggcagcttca ccggcctggg cgtgtagccg cgcgcgcgcc ggatgaactg cgccgcgccg
     1261 gtggtgccct gcctgagcac gctgtcgtcg cagcgggcga cgatgtcgcg gtcgtgcagc
     1321 agcaatgcgt cggcaatgcc gtcgagccgc cccagggcct cgtcgttgcc gatcaccagc
     1381 ggctcaccgc cggggttggc gctggtcatc acgagcagca ggtcgtgtgc gtcgtgcagc
     1441 cagtcagtgc ccgcagggcg atccgcagct tcgtgaaaca gaagatattg gatcggcgtg
     1501 cagggcagca tgacgccggc cacattcagg cccggcgcga cgccggcgag gcgctcggcg
     1561 cagccgtgca gcatctgcag cagcacgatc ggccgctcgc aggattggag cagcgcctgc
     1621 tcggcggcgc cggcgcgcac ccagcgcgcg gccgaggcga ggttcgcggc catcaccgca
     1681 aacggctttt cctcacgctg cttgcgttcg cgcagcagcg ccacggcgcc ggcgttgcgg
     1741 gcgtcgcagg cgaggtgaaa gccaccgagc cccttgatgg cgacgatcct gccggcgcgc
     1801 agaaggccga gcgtggccgc gatcggatcg ccggggacgg gctggtttcg tgcatcgacg
     1861 agcgcgagcg cgggcccgca caccgggcag gcattgggct cggcatggaa gcgccggtgc
     1921 agcggatcgg tgtattcacg caggcactgc gggcactgcg ggaaagcggc catgctggtt
     1981 tgcgcgcggt cgtagggcag ggcgcgtgtc agcgtgtagc gcgggccgca ctgggtgcag
     2041 ttgatgaagg cgtagcggtg gcgccggtcc gcagggtcga acaactcggc caggcattcg
     2101 tcgcaggtgg cggtgtcggg cgggatcgag gtggtcacct tgcccgcccg gctggccagg
     2161 atgcgaaagc cctcctcgcg gccgacgcgc gcgcgcgccg tggcacggag agtttcgacg
     2221 cgggccagcg gcggcgcgtc cgttctcagc cgctgctcga acgaatccag cgcgaacgcc
     2281 ggaccttgca cttcgatcga gacaccgtct gcgtcgttga agacccagcc ggccaggccc
     2341 agctcgtgcg caaggcgaaa gacgaaaggc cggaagccga cgccctgcac cgcgccgcgg
     2401 gcgcggatcg cgcggcgcgc gacatcggtc agggtcagca tcgcgggggc ctttcaggga
     2461 agcttcaggc tcgcgagctg cgcctcgagc tcggcgatgc ggcgttgcag cgcatcgacc
     2521 gggtccgggt gctgctgcgg cgcagccgcc tgcgccatgc gctccagggc gttcaactgg
     2581 gcggcccgct tcagtgcatc ggcctggtcc aggcgccgct cgcgcgccgc gcgtgcgccg
     2641 cgctcgatcc aggtcagcca gtcgtgcatg ccttc
//
LOCUS       DASVHM010000458        10403 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_826393, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000458 DASVHM010000000
VERSION     DASVHM010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 10403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10403
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_826393"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2762)
                     /locus_tag="VF308_08640"
     CDS             complement(<1..2762)
                     /locus_tag="VF308_08640"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX7436761.1"
                     /translation="MPDPSIRCARCQADNPPGARFCSACGQPLGGACPRCGAEVATGQ
                     RFCSACGQDLAPPAPATAVAPVTPVTPVGPTAGDEGERRHATVMFSDLCGYTALNEEL
                     DPEEVEAVMTRIKADASDVIERHGGTVNQFVGDEVMALFGIPLAHRDDARSAVSAALE
                     LHRAVAAYVATLGPAIARSLALHTGINTGLVVARRSDARAGDYALTGDAVNTAARLRG
                     LAKPGQVLVSAATWRLVSDHFDAEETAPVEVKGKEQPLAAWRVRGPRQATRGGEAALV
                     GRDEELRDFRALAVACAERKRSRVVVVRGDPGVGKSRLVAEFAAVAGALGFSCHAAAV
                     LDFGAATGRDAMRSLARSLVGLPGAADEDERRRALESASGERALAAEKRLFLHDLLDI
                     APPSDLRVLAAAMSTAAREKGSLLALCDLATSAAVAAPLLLVVEDIHWADAWTLERLA
                     ALAVLAAKQPMLVVMTTRFAGDPTAGAWRTVLHGAPLLGVDLGPLSEEESLRLAAQAS
                     SMPPALIESCATRAEGNPLFLLQLLLNAGETTQSALPGSIQALVHTRMDRLAGADKLA
                     LQAAAVLGQRFGAAALRHLVENPAYDCRLLVEQFLVRADGGEFMFCHALIRDGAYASL
                     LHKRRRALHARAAEWFGPRDLVLAAEHFDRADDPRAAAAYLAASDAVAAQFRHPGALA
                     LAERGLALAAEPTTRFALLMARGKLLVELGRAGDAIEASRAALAVAASGGERAQALIA
                     MAAGMRLNDRIAEGLAALDEAEPLATAAALPLELSRLHHLRGNLLFPLGRDVDCVREH
                     ELALRHARDAGSLQAQAAALGGLGDGYYLQGRMRSANQQFRECVALAREHGFGKLEVA
                     NLSMVGWSGMHLSEVGTSIAVGHEAIALAMRASQPRAELMARPLVAWCEGLIRGRLDE
                     AERENAA"
     gene            3003..3380
                     /gene="rpsL"
                     /locus_tag="VF308_08645"
     CDS             3003..3380
                     /gene="rpsL"
                     /locus_tag="VF308_08645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEX7436762.1"
                     /translation="MPTINQLVRHGRETETAKSKSPALQGGPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTNGFEIISYIGGEGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGSL
                     DLQGVKDRKQSRSKYGAKRPKKA"
     gene            3543..4013
                     /gene="rpsG"
                     /locus_tag="VF308_08650"
     CDS             3543..4013
                     /gene="rpsG"
                     /locus_tag="VF308_08650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008649176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEX7436763.1"
                     /translation="MPRRREVPKRDILPDPKFGSVDLSKFMNVIMESGKKAVAERIIY
                     GALDQVEKKSGKDPLEIFIVALNNIKPMVEVKSRRVGGANYQVPVEVRPVRRVALAMR
                     WLKESARKRGEKSMAQRLANELLEAVEGRGGAMKKRDEVHRMAEANKAFSHFRF"
     gene            4112..6235
                     /gene="fusA"
                     /locus_tag="VF308_08655"
     CDS             4112..6235
                     /gene="fusA"
                     /locus_tag="VF308_08655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEX7436764.1"
                     /translation="MSRKTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTCFWKGMDFSHPEHRINIIDTPGHVDFTIEVERS
                     MRVLDGAVMVYDSVGGVQPQSETVWRQANKYKVPRLAFVNKMDRVGADFLRVRQMMID
                     RLKANPVVITLPIGAEDNFKGVVDLVKMKAIYWDEASQGMKFSYEEIPAELQAESEKW
                     REQMVEAAAEANEELMNKYLESGKLTEDEITQGIRIRTIAGEIHPMLCGSAFKNKGVQ
                     RLLDAVLDFMPSPVDIPPVPGTDDDDKPVTRRRADDEKFSALAFKLMTDPYVGQLTFV
                     RVYSGILKSGDSVFNPIRGKKERIGRILQMHANQREEIKEILAGDIAACVGLRDVTTG
                     ETLCDPAAIIMLERMVFPEPVISQAVEPKTKADQEKMGIALGRLAQEDPSFRVKTDEE
                     SGQTIISGMGELHLEIIVDRMRREFGVEANVGKPQVAYRETIRKAVSDVEGKFVRQSG
                     GKGQYGHVVLKIEPQEPGKGFEFVDAIKGGVVPREFIPAVRKGVEDSLPNGVLAGYPV
                     VDVKVTLTFGSYHEVDSNENAFKMAASFGFKDGCRKASPVILEPMMAVEVETPEDFAG
                     NVMGDLSSRRGMVQGMDDMAGGGKLIKAEVPLSEMFGYSTTLRSMSQGRATYSMEFKH
                     YSEAPKNVADAIITSRGSITAGRAT"
     gene            6301..7491
                     /gene="tuf"
                     /locus_tag="VF308_08660"
     CDS             6301..7491
                     /gene="tuf"
                     /locus_tag="VF308_08660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011299314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEX7436765.1"
                     /translation="MAKSKYERTKPHVNVGTIGHVDHGKTTLTAALTSVLSKLYGGEA
                     KAYDQIDAAPEEKARGITINTAHVEYETKNRHYAHVDCPGHADYIKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLARQVGVPYIIVYMNKCDMVDDAELLELVEMEVRELLDK
                     YEFPGDATPIIHGSAKLALEGDKGELGEGSILKLAEALDTYIPQPKRAIDGAFLMPVE
                     DVFSISGRGTVVTGRVERGVIKVGEEIEIVGITATQKTTCTGVEMFRKLLDQGQAGDN
                     VGILLRGTKREEVQRGQVLCKPGSVKPHTHFTAEIYVLSKEEGGRHTPFFNNYRPQFY
                     FRTTDVTGAVELAKDKEMVMPGDNVSITVKLINPIAMEEGLRFAIREGGRTVGAGVVA
                     KILE"
     gene            7553..7867
                     /gene="rpsJ"
                     /locus_tag="VF308_08665"
     CDS             7553..7867
                     /gene="rpsJ"
                     /locus_tag="VF308_08665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003264110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEX7436766.1"
                     /translation="MATQQRIRIRLKAFDYKLIDQSALEIVDTAKRTGAIVKGPVPLP
                     TRMQRFDILRSPHVNKTSRDQFEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIK
                     LQ"
     gene            8054..8773
                     /gene="rplC"
                     /locus_tag="VF308_08670"
     CDS             8054..8773
                     /gene="rplC"
                     /locus_tag="VF308_08670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011799637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEX7436767.1"
                     /translation="MTTRSNEGAHVDERLGLLGRKVGMMRIFTDDGDAIPVTVLDVSN
                     NRVAQVKTAATDGYAALQVVFGDKKASRVSKPEAGHLAKAGVVAGELVQEFRVAETVA
                     AEYKPGAQVPVGVFAVGQLVDVQGTTIGKGFTGTIKRHHFKSQRASHGNSRSHNVPGS
                     ISMAQDPGRVFPGKKMSGQLGNVTRTTQNLDIVRIDEARQLLLVRGAVPGAKNGHVVV
                     RPAVKAPPKGAPAKTSAKGAA"
     gene            8773..9393
                     /gene="rplD"
                     /locus_tag="VF308_08675"
     CDS             8773..9393
                     /gene="rplD"
                     /locus_tag="VF308_08675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEX7436768.1"
                     /translation="MQLELLNEQGQATAKFDAPDTVFARDYNEALVHQIVVAFQANAR
                     LGTRAQLDRAMVKHSTKKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPDENFTQKVN
                     KKMYRAGMSAILSQLAREGRLAVVESLSVDSPKTKGLAQKFKSMGLDSVLVITDQMAD
                     NLIMASRNLANVLIVEPRYADPLALVHYKKVLVTKGAMEQLKEMLS"
     gene            9585..9905
                     /gene="rplW"
                     /locus_tag="VF308_08680"
     CDS             9585..9905
                     /gene="rplW"
                     /locus_tag="VF308_08680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011799639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEX7436769.1"
                     /translation="MAPARSAHAESRLAQVLIAPIVSEKATMAAEKHNQVLFKVMRDA
                     TKPEIKAAVELMFKVTVDSVQTVQHKGKTKRFGKGTGRRDHVKKAYVCLAAGQELNFS
                     GEGA"
     gene            9905..>10403
                     /gene="rplB"
                     /locus_tag="VF308_08685"
     CDS             9905..>10403
                     /gene="rplB"
                     /locus_tag="VF308_08685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEX7436770.1"
                     /translation="MPVIKIKPTSPGRRAVVKVSHPHLYKGRPEVSLLEPQMQNAGRN
                     NNGHITTRHKGGGHKHHYRVVDFVRNKDSIPAKVERIEYDPNRSAHIALVVYADGDRR
                     YVIAPRGLEVGSTILSGAEAPIKAGNTLPIRNIPVGSIIHCIEMLPGKGAQIARSAGT
                     ACTLLA"
BASE COUNT         1869 a         3518 c         3581 g         1435 t
ORIGIN      
        1 gcagcgttct cccgctcggc ctcgtcgaga cggccgcgga tcagcccttc gcaccaggcg
       61 acgagcggtc gcgccatcaa ctcggcgcgc ggctgcgacg cgcgcatcgc cagcgcgatg
      121 gcctcgtggc cgacggcgat cgatgttccg acctcgctca ggtgcatgcc ggaccagccg
      181 accatcgaca ggttcgcgac ctcgagcttg ccgaagccgt gctcgcgcgc gagcgcgacg
      241 cactcgcgga actgctggtt ggccgagcgc atccggccct gcaggtagta gccgtcgccg
      301 aggccgccga gggccgctgc ctgggcctgc aaggatccgg cgtcccgggc atggcgaagc
      361 gccagctcgt gctcgcgcac gcagtcgacg tcgcggccga gcggaaagag gaggttgccg
      421 cgcaggtggt gcagtcgcga gagctcgagc ggcagcgccg cggcggtcgc gagcggctcg
      481 gcctcgtcga gggcggccag accctcggcg atgcggtcgt tgaggcgcat ccccgccgcc
      541 atcgcgatca gtgcctgcgc ccgttcgccg ccgctggcgg cgacggcgag cgcggcccgg
      601 ctcgcttcga tcgcgtcgcc ggcgcggccg agctcgacga gcagcttgcc gcgtgccatc
      661 aggagcgcga accgcgtcgt cggttcggcc gcgagcgcga ggccgcgctc ggccagcgcg
      721 agcgcgcccg gatgtcggaa ctgcgccgcg acggcgtcgc tcgccgcgag gtacgcggca
      781 gcggcgcgcg ggtcgtcggc gcggtcgaag tgctcggcgg cgaggacgag gtcgcgcggc
      841 ccgaaccact cggcggcgcg cgcgtgcagg gcgcggcgcc gcttgtgcag tagcgaggcg
      901 taggcgccgt cgcggatgag ggcgtggcag aacatgaact cgccgccgtc ggcgcgaacc
      961 aggaactgct cgacgagcag ccggcagtcg tacgccgggt tctcgacgag gtggcgcagc
     1021 gccgcggcgc cgaagcgctg gccgaggacc gccgccgcct ggagcgcgag cttgtcggcg
     1081 ccggcgaggc ggtccattcg cgtgtggacg agcgcctgga tcgagccggg aagcgccgac
     1141 tgcgtcgtct cgccggcgtt gaggagcagc tgcagcagga agagcggatt gccctcggcg
     1201 cgcgtcgcgc aactttcgat cagcgccggc ggcatcgacg acgcctgcgc ggcgaggcgc
     1261 agcgactcct cctcgctcag cgggccgagg tcgacgccga gcagcggcgc gccgtgcagc
     1321 acggtgcgcc aggcgccggc ggtcgggtcg ccggcgaagc gggtcgtcat cacgacgagc
     1381 atgggctgct tcgcggcgag gacagccagg gcggcgaggc gctcgagcgt ccaggcgtcg
     1441 gcccagtgga tgtcctcgac gacgagcagg agcggcgccg ctacggcggc gctcgtcgcc
     1501 aggtcgcaga gcgcgagcag cgagcccttc tcgcgcgccg cggtgctcat cgcggcggcg
     1561 agcacgcgca ggtcggaagg cggcgcgatg tcgagcaggt cgtgcaggaa gaggcgcttc
     1621 tcggcggcga gggcgcgctc gccgctcgcg ctttcgagcg cgcgacgacg ctcgtcctcg
     1681 tcggcggcgc cgggcaggcc gaccaggctg cgggcgaggc tgcgcatcgc gtcgcggccg
     1741 gtcgccgcgc cgaagtcgag caccgcggcg gcgtggcacg agaagccgag ggcgccggcg
     1801 acggcggcga actcggcgac caggcgcgac ttgccgacgc ccggatcgcc gcggacgacg
     1861 acgacgcggc tgcgctttcg ctcggcgcat gcaacggcga gggcgcggaa gtcgcgcaac
     1921 tcctcgtcgc ggccgacgag cgccgcttcg ccgccgcgcg tcgcctggcg cgggccgcgc
     1981 acgcgccagg cggcgagcgg ctgctccttg cccttgacct cgaccggcgc cgtctcctcg
     2041 gcgtcgaagt ggtccgagac gaggcgccag gtcgcggcgc tgacgagcac ctggccaggc
     2101 ttggccaggc cgcgcaggcg cgccgcggtg ttgacggcgt cgccggtcag cgcgtagtcg
     2161 ccggcgcggg cgtcgctgcg gcgggcgacg accaggccgg tgttgatgcc ggtgtgcagg
     2221 gcgagcgagc gggcgatcgc cggcccgagc gtcgccacgt aggcggcgac cgcgcggtgc
     2281 agctcgaggg ccgccgagac cgcgctgcgg gcgtcgtcgc gatgggcaag cgggatgccg
     2341 aagagcgcca tgacctcgtc gccgacgaac tggttgaccg tgccgccatg acgctcgatg
     2401 acgtcgctgg cgtcggcctt gattcgcgtc atcaccgcct cgacctcctc cgggtctagc
     2461 tcttcgttga gcgcggtgta gccgcagagg tccgagaaca tcaccgtcgc gtgccggcgc
     2521 tcgccctcgt cgcccgcagt cgggccgacc ggggtgacgg gggtgaccgg ggcgaccgcc
     2581 gtcgcgggtg ccggcggtgc gaggtcctgg ccgcaggcgg agcagaagcg ctgcccggtg
     2641 gcgacctcgg cgccgcaccg ggggcaggcg ccgccgagcg gctgcccgca cgcgctgcag
     2701 aagcgggccc cgggcgggtt gtcggcttgg cagcgggcgc agcgtatgga gggatcgggc
     2761 atcgcgagcc gcgatcatcc cgcccgcatc gctcgaggac aaggccccgg cttgcgggcg
     2821 cccctgccgc ggcatacaat catcggcttt tctcgtcttc ggctttcgat gaggccgggg
     2881 gcgccaagcc gccttccgtg agcggtattc ccgtcacggc cgacaccgag gcagctggcg
     2941 caattcgtca gggccttccg ccttggccgt ttcgcccgcg cttcaccaga caacgagttc
     3001 ctatgcccac gatcaaccag ctcgtccgcc atggccgcga gaccgagacc gccaagtcga
     3061 agtcgccggc gctgcagggc ggcccgcaac gccgcggcgt ctgcacgcgc gtctacacga
     3121 cgacgcccaa gaagccgaac tcggcgctcc gcaaggtcgc caaggtgcgc ctgacgaacg
     3181 ggttcgagat catttcgtac atcggcggcg aaggccacaa cctgcaggag cacagcgtcg
     3241 tgctcgtgcg cggcggccgc gtcaaggatc tgcccggcgt tcgctatcac atcgttcgcg
     3301 gctcgctcga cctgcaaggc gtcaaagacc gcaagcagtc gcgctccaaa tacggcgcca
     3361 agcgcccgaa gaaggcttaa cggccttctg cggggccatc cgaccccggt tcgacccgat
     3421 gcccggctcc gtgccgggtt cgggctttat ggcggccctc gggtcgtcga gtaagtgggt
     3481 ggtcctgtgg ctgccccggc gttcgcgaag cgggcgccaa ctgaagcaaa aggaagagtg
     3541 aaatgcctcg tcgtcgcgaa gtccccaagc gggacatcct ccccgatccc aagttcggct
     3601 ctgtcgacct gtccaagttc atgaacgtca tcatggaatc gggcaagaag gccgtcgccg
     3661 aacggatcat ctacggcgcc ctcgaccagg tcgagaagaa gtccggcaag gacccgctcg
     3721 agatcttcat cgtcgccttg aacaacatca agccgatggt cgaagtgaag tcgcgccgcg
     3781 tcggcggcgc gaactaccag gtgccggtcg aggttcgccc ggtgcggcgc gtcgccctgg
     3841 cgatgcgctg gctgaaggaa tcggcgcgca agcgcggcga gaagtcgatg gcgcagcggc
     3901 tcgcgaacga gctgctcgag gccgtcgagg gccgcggcgg cgcgatgaag aagcgcgacg
     3961 aagtgcaccg gatggcggag gccaacaagg ccttctcgca tttccgcttc tgagcctcat
     4021 ctagagccga accttcttca gctcgctcgt catcgggccg cgcgcgaaac gcggcggctc
     4081 gacacgggtg ggacgcattt ggagcttttc catgtcccgc aagaccccca tcgagcgcta
     4141 ccggaacatc ggtatctcgg cccacatcga cgccggcaag acgacgacga ccgagcgcat
     4201 cctgttctac accggggtca accacaagat cggtgaagtg cacgacggcg ccgcgacgat
     4261 ggactggatg gagcaggagc aggagcgcgg catcacgatc acgtcggctg cgacgacctg
     4321 cttctggaag ggcatggact tctcgcatcc cgagcaccgc atcaacatca tcgacacgcc
     4381 gggccacgtc gacttcacga tcgaagtcga gcgcagcatg cgcgtcctcg acggcgcggt
     4441 catggtctac gactcggtgg gcggcgtgca gccgcagtcg gaaaccgtct ggcgccaggc
     4501 caacaagtac aaggtgccgc gcttggcgtt cgtcaacaag atggaccgcg tcggcgccga
     4561 cttcctgcgc gtgcgccaga tgatgatcga tcggctgaag gccaaccccg tggtgatcac
     4621 cctgccgatc ggcgcggaag acaacttcaa gggcgtggtc gacctcgtca agatgaaggc
     4681 gatctactgg gacgaagcat cccagggcat gaagttcagc tacgaggaga tccctgccga
     4741 gctgcaggcc gaatccgaga agtggcgcga gcagatggtc gaggccgccg ccgaggcgaa
     4801 cgaagagctg atgaacaagt acctcgagtc gggcaagctg accgaggacg agatcacgca
     4861 gggcatccgc atccgcacga tcgccggcga gatccacccg atgctctgcg gcagcgcatt
     4921 caagaacaag ggcgtgcagc gcttgctcga cgcggtgctc gacttcatgc cgtcgccggt
     4981 cgacatcccg ccggtgccgg gtaccgacga cgacgacaag ccggtcactc ggcggcgtgc
     5041 cgacgacgag aagttttccg ccctcgcgtt caagctgatg accgacccgt atgtcggcca
     5101 gctcaccttc gtgcgcgtct attcgggcat cctgaagtcg ggcgactcgg tcttcaatcc
     5161 gatccgtggc aagaaggaac gcatcggccg gatcctgcag atgcacgcca accagcgcga
     5221 agagatcaag gaaatcctgg ccggcgacat cgcggcctgc gtcggcctgc gcgacgtgac
     5281 gaccggcgag acgctgtgcg atccggcggc gatcatcatg ctcgagagga tggtctttcc
     5341 ggagccggtg atctcgcagg ccgtcgagcc gaagaccaag gccgaccagg agaagatggg
     5401 catcgccctc ggccgtctgg cccaggaaga cccgtcgttt cgcgtcaaga ccgacgagga
     5461 gtccggccag acgatcatct ccggcatggg cgagctccac ctcgagatca tcgtcgaccg
     5521 catgaggcgc gagttcggcg tcgaggccaa tgtcggcaag ccgcaggtcg cgtatcgcga
     5581 gacgattcgc aaggccgtga gcgacgtcga aggcaagttc gttcgccagt cgggcggcaa
     5641 gggccagtac ggccacgtcg tactgaagat cgagccgcag gagccgggca agggcttcga
     5701 gtttgtcgat gcgatcaagg gcggcgtcgt gccgcgcgaa ttcatcccgg ctgtcaggaa
     5761 gggcgtcgag gattcgctgc cgaacggcgt gctcgccggc tatccggtcg tcgacgtcaa
     5821 ggtgacgctc accttcggct cgtaccatga ggtcgactcg aacgagaacg cgttcaagat
     5881 ggcggcatcg ttcggcttca aggacggctg ccgcaaggcg tcgccggtga tcctcgagcc
     5941 gatgatggcg gtcgaggtcg agacgccgga agacttcgcc ggcaacgtca tgggcgatct
     6001 ctcgtccagg cgcggcatgg tccagggcat ggacgacatg gctggcggcg gcaagctcat
     6061 caaggccgag gtgccgttgt cggagatgtt cggctactcg acgaccttgc gatcgatgtc
     6121 gcagggccgg gcgacgtact cgatggagtt caagcactac agcgaggcgc cgaagaacgt
     6181 cgccgacgcg atcatcacgt cgcgcggcag catcaccgcc ggccgcgcga cgtaagcttc
     6241 gcaggacgga cagcggggtc gcaagcgacc ccttacagga ttacttgacg gagtttcgag
     6301 atggcaaaga gcaaatacga gcgcaccaag ccgcacgtga acgtggggac cattgggcac
     6361 gtcgaccacg gcaagacgac cttgacggcg gcgttgacgt cggtgctgag caagctctac
     6421 ggtggcgagg ccaaggcgta cgaccagatc gacgcggcgc ccgaagagaa ggcgcgcggg
     6481 atcacgatca acaccgccca cgtcgagtac gagaccaaga accggcacta cgcccacgtc
     6541 gactgcccgg ggcacgccga ctacatcaag aacatgatca ccggggcggc gcagatggac
     6601 ggcgcgatcc tggtggtgag cgctgccgac ggccccatgc cgcagacccg cgagcacatc
     6661 ctgctggcgc gccaggtggg cgtgccctac atcatcgtct acatgaacaa gtgcgacatg
     6721 gtcgacgacg ccgagctctt ggagctcgtc gagatggaag tgcgcgagct cctcgacaag
     6781 tacgagttcc cgggcgacgc caccccgatc atccacggct cggccaagct ggcgctcgag
     6841 ggcgacaagg gcgagctcgg cgaaggcagc atcttgaagc tcgccgaagc cctcgatacc
     6901 tacatccccc agcccaagcg ggccatcgac ggcgccttcc tgatgcctgt ggaagacgtc
     6961 ttctccatct ccgggcgcgg caccgtcgtg acggggcggg tcgagcgcgg cgtcatcaag
     7021 gtcggcgagg aaatcgagat cgtcggcatc acggcgaccc agaagaccac ctgcaccggc
     7081 gtcgagatgt tcagaaagct cttggaccag ggccaggcgg gcgacaacgt cggcatcctg
     7141 ctgcgcggca ccaagagaga agaagtccag cgcggccagg tgctgtgcaa gccgggatcg
     7201 gtcaagccgc acacccactt cacggccgag atctatgtcc tctcaaagga agagggcggg
     7261 cgccacacgc cgttcttcaa caactaccgg ccccagttct acttccgcac gaccgacgtg
     7321 accggagcgg tcgagcttgc caaggacaag gagatggtga tgccgggcga caacgtctcg
     7381 atcaccgtca agctcatcaa ccccatcgcc atggaagaag gcctgcgctt cgccatcaga
     7441 gaaggcggcc gtaccgtcgg cgccggggtg gtggcgaaga ttctggaata ggaccgcgcg
     7501 ccgcgccaac tcccgccggc gcgagccggc atcgctcttt gaaagaaaca tcatggctac
     7561 ccagcaaaga atccgcatcc gcctcaaggc gttcgactac aagctgatcg accagtcggc
     7621 gctcgagatc gtcgataccg ccaagcgcac cggcgccatc gtcaagggcc cggtgccctt
     7681 gccgacgcgc atgcagcgct tcgacatcct gcgctcgccg cacgtcaaca agacctcgcg
     7741 cgaccagttc gagatccgca cccaccagcg cctgatggac atcgtcgacc cgaccgacaa
     7801 gaccgtcgat gcgctgatga agctcgacct gccggccggc gtcgacgtcg agatcaagct
     7861 gcagtaactc ctgcctcggg tacgccgctt ggtggacccg aggccttctg ataaactagc
     7921 tggctttccc gcgatcgcgc ctcaggcccc ggccttcgaa gccgcgacga caggaaaacc
     7981 ttccaaagtc agcccggcca atcgctgtcg ggcgttgcaa caaaggccgc gctcgcgtgg
     8041 ctggagaaca tttatgacca ctcggtcgaa tgagggcgct cacgtcgacg agcgcctcgg
     8101 gctcctgggc cgcaaggtgg ggatgatgcg catcttcacc gacgacgggg atgcgattcc
     8161 cgtcaccgtc ctcgacgtct cgaacaaccg cgtcgcccag gtcaagaccg ccgcgaccga
     8221 cggctatgcc gcgctccagg tcgtcttcgg tgacaagaag gcttcgcgcg tcagcaagcc
     8281 cgaagcgggc catctggcca aggccggcgt cgtcgcgggc gagctggtgc aggaattccg
     8341 cgtcgccgag accgtcgccg ccgaatacaa gcccggcgct caggttccgg tcggcgtctt
     8401 cgccgtcggc cagctcgtcg acgtgcaggg cacgacgatc ggcaagggtt tcaccggaac
     8461 gatcaagcgc caccacttca agtcgcagcg cgcctcgcac ggcaacagcc ggtcgcacaa
     8521 cgtgcccggc tcgatctcga tggcgcagga cccggggcgc gtgttcccgg gcaaaaagat
     8581 gtcgggccag ctcggcaacg tcacgcgcac gacccagaac ctcgacatcg tccgcatcga
     8641 cgaagcgcgc cagctgctgc tcgtgcgcgg cgcggtcccg ggcgcgaaga acggccacgt
     8701 cgtggtccgt cccgccgtga aggcgccgcc caagggcgcc cccgccaaga cttccgccaa
     8761 gggagccgcc tgatgcaact cgaactcctc aacgaacaag gccaggcgac ggcgaagttc
     8821 gacgcgccgg acacggtgtt cgcgcgcgac tacaacgaag cgctggtgca ccagatcgtc
     8881 gtcgccttcc aggccaacgc gcgcctgggc acgcgcgccc agctcgaccg ggcgatggtc
     8941 aagcactcga ccaagaagcc gtggcgccag aagggcaccg gccgcgcccg cgccggcatg
     9001 acctcgtcgc cgctatggcg cggcggcgga cggatcttcc cgaacagccc ggacgagaac
     9061 ttcacccaga aggtgaacaa gaagatgtac cgcgccggca tgtcggcgat cctgtcgcag
     9121 cttgcgcgag aagggcgcct ggcggtcgtc gagtcgctga gcgtcgactc gcccaagacc
     9181 aagggcctgg cgcagaagtt caagtcgatg ggcctcgact cggtgctggt catcaccgac
     9241 cagatggccg acaacctgat catggcgtcg cgcaacctcg ccaacgtgct catcgtcgag
     9301 ccgcgctacg ccgacccgct cgccctcgtg cactacaaga aggtgctcgt caccaagggc
     9361 gcgatggagc aactgaagga gatgctgtca tgagcacggc acccgacacc tcgaaggcca
     9421 aggccgaccc gaagaccgac gccaaggcga agaagtccgc cgaggcgaag ccggccaagg
     9481 aatcgaagac caagcgggcc gcagtcgccg cagaagcaga ggccgcgccg aaggctgccg
     9541 ccgcgaagaa gccggctgcg aagaaggcca aggtcgcgaa gcctgtggcg ccggctcgct
     9601 ccgcgcacgc cgagagccgc ctcgcccagg tcctgatcgc gccgatcgtc agcgagaagg
     9661 cgacgatggc cgccgagaag cacaaccagg tgctgttcaa ggtcatgcgc gacgcgacca
     9721 agcccgagat caaggcggcc gtcgagctga tgttcaaggt caccgtcgat tccgtgcaaa
     9781 ccgtccagca caagggcaag acgaagcgct tcggcaaggg aaccggccgt cgcgaccacg
     9841 tcaagaaggc ctacgtctgc ctggccgcgg gccaggagct gaacttctcc ggggagggcg
     9901 cgtaatgccc gtcatcaaga tcaagccgac gtcgccgggc aggcgcgcgg tcgtcaaggt
     9961 ctcgcatccg cacctgtaca agggccggcc cgaagtgtcg ctgctcgagc cgcagatgca
    10021 gaacgccggc cgcaacaaca acggccatat cacgacgcgc cacaagggcg gcggccacaa
    10081 gcaccactac cgcgtcgtcg atttcgtccg caacaaggat tcgatcccgg ccaaggtcga
    10141 gcgcatcgag tacgacccga accgcagcgc ccacatcgct ttggtcgtct acgccgacgg
    10201 cgatcgccgc tacgtgatcg cgccgcgcgg cctcgaggtc ggctcgacga tcctgtcggg
    10261 cgccgaggcg ccgatcaagg ccggcaacac gctgccgatc aggaacatcc cggtcggctc
    10321 gatcatccac tgcatcgaga tgctgcctgg caagggcgcg cagatcgcgc gctcggccgg
    10381 cacggcgtgc acgctgctgg cgc
//
LOCUS       DASVHM010000459         2382 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1403770, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000459 DASVHM010000000
VERSION     DASVHM010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2382
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1403770"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(160..1029)
                     /gene="atpG"
                     /locus_tag="VF308_08690"
     CDS             complement(160..1029)
                     /gene="atpG"
                     /locus_tag="VF308_08690"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012202356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEX7436771.1"
                     /translation="MAAGKEIRGKIKSVENTRKITKAMEMVAASKMRKAQERMRAARP
                     YAERVRSLAANLSHATPEYKHPFMVANADAKVAGFIVVTTDKGLCGGLNTNVLRATTA
                     KLKELESRGQKAEAVAIGNKGLGFLNRIGAKVVSHATHLGDRPLLEKLIGPVKVLLDA
                     YAAGQLSAVYLCYTRFINTMRQEPVIQQLLPLSDEQMQKQEGKHGWDYIYEPDAKVVI
                     DELLVRYIEALVYQATAENMASEQSARMVAMKSATDNAGNVIGELKLVYNKTRQAAIT
                     KELSEIVAGAAAV"
     gene            complement(1063..>2382)
                     /gene="atpA"
                     /locus_tag="VF308_08695"
     CDS             complement(1063..>2382)
                     /gene="atpA"
                     /locus_tag="VF308_08695"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019657638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEX7436772.1"
                     /translation="VILGDYTELSEGNEVKRTGKILSVPVGEAMIGRVVNALGAPIDG
                     KGPIATKMSAPIEKIAPGVIARQSVSQPMATGLKSIDSMVPIGRGQRELIIGDRQTGK
                     TAVAIDAIINQKGQNMTCIYVAIGQKASSIKNVVRSLEANGAMEYTIVVAASAAESAA
                     MQYVSAYSGCTMGEYFRDRGEDALIVYDDLSKQAVAYRQVSLLLRRPPGREAYPGDVF
                     YLHSRLLERAARVNEKYVEDFTKGAVKGKTGSLTALPIIETQAGDVSAFVPTNVISIT
                     DGQIFLETSLFNAGIRPAINAGISVSRVGGAAQTKVIKGLSGGIRTDLAQYRELAAFA
                     QFASDLDEATRKQLDRGARVTELLKQPQYSPLPISLMAASLFAVNKGFMDDVDVKKVL
                     AFESGLHTHLKTSHAGLLAKIEDSKQLDKDAEAELSGAVTAFKKSFA"
BASE COUNT          343 a          759 c          803 g          477 t
ORIGIN      
        1 cgtagatgcg cggcatgtgc tcgcgcggaa attcgacgtc gacgacggcg ccgatgcact
       61 ggacgatctt gccttgcgcg gcgttggcgg tttgcatgtc aaccatgttg tgttccttgc
      121 ttcttcaact tgatgtcgtc aaaccgtgga tcggagccgc tagacagcgg cggcacccgc
      181 cacgatttcc gagagttcct tggtgatcgc cgcctgacgc gtcttgttgt agacgagctt
      241 gagctcgccg atcacgttgc cggcgttgtc ggtcgccgac ttcatcgcga ccatgcgcgc
      301 cgactgctcg gaggccatgt tctcggcggt cgcctggtag accagcgcct cgatatagcg
      361 gacgagcagc tcgtcgatca cgaccttggc gtcgggctcg tagatgtagt cccagccgtg
      421 tttgccctcc tgcttctgca tctgctcgtc ggagagcggc agcagctgct ggatcaccgg
      481 ctcctggcgc atcgtgttga tgaagcgcgt gtagcagagg tagacggcgg agagctggcc
      541 ggcggcgtag gcgtcgagca gcaccttcac cgggccgatc agcttttcga gcagcggccg
      601 gtcgccgagg tgggtcgcgt gcgagacgac cttggcaccg atccggttca ggaagcccag
      661 ccccttgttg ccgatcgcga ccgcctcggc cttctggccc cggctctcga gctccttgag
      721 cttggccgtg gtcgcgcgca gcacgttggt gttgaggccg ccgcacaggc ccttgtcggt
      781 cgtgacgacg atgaagccgg cgaccttcgc atcggcgttg gcgaccatga acggatgctt
      841 gtactccggc gtcgcgtgcg agaggttggc ggcgaggctt ctcacgcgct cggcgtacgg
      901 gcgcgccgcg cgcatgcgct cctgcgcctt cctcatcttc gacgcggcga ccatttccat
      961 cgccttggtg atcttcctcg tgttctcgac gctcttgatc ttgccgcgaa tttccttgcc
     1021 ggctgccatg cgtgagtcct ctctatgtcc gtcgaaatgc gatcaggcga acgacttctt
     1081 gaaggccgtg acggcgcccg acagctcggc ctcggcgtcc ttgtcgagct gcttcgagtc
     1141 ctcgatcttg gcaagcaggc cggcgtggct ggtcttcagg tgcgtgtgca ggccgctctc
     1201 gaacgcgagc accttcttga cgtcgacgtc gtccatgaag cccttgttga ccgcgaacag
     1261 cgacgcggcc atcagcgaga tcggcagcgg cgagtactgc ggctgcttga gcagctcggt
     1321 gacgcgggcg ccgcggtcga gctgcttgcg cgtcgcctcg tcgaggtcgg acgcgaactg
     1381 ggcgaacgcg gcgagctcgc ggtactgcgc aaggtcggtg cggatcccgc ccgagaggcc
     1441 cttgatgacc ttggtctgag ccgcgccgcc gacgcgcgac accgaaatgc cggcgttgat
     1501 ggcgggccgg atgccggcgt tgaagagcga ggtctcgagg aagatctgac cgtcggtgat
     1561 cgagatcacg ttggtcggca cgaacgccga gacgtcgccg gcctgggtct cgatgatcgg
     1621 cagcgccgtc agcgacccgg tcttgccctt gacggcgccc ttggtgaagt cctcgacgta
     1681 cttctcgttg acgcgcgcgg cgcgctcgag caggcgcgag tggaggtaga acacgtcgcc
     1741 gggataggct tcgcggcccg gcgggcggcg cagcaggagc gagacctggc gatacgcgac
     1801 agcctgcttg gaaaggtcgt cgtagacgat cagcgcgtct tcgccgcgat cgcggaagta
     1861 ttcgcccatc gtgcagcccg agtaggccga gacgtactgc atggccgcgc tctcggcggc
     1921 cgaagcggcg acgacgatgg tgtactccat cgcgccgttg gcttcgagcg agcgcaccac
     1981 gttcttgatc gacgacgcct tctggccgat cgcgacgtag atgcaggtca tgttctgacc
     2041 cttctggttg atgatcgcgt cgatcgccac ggcggtcttg ccggtctgcc ggtcgccgat
     2101 gatgagctcg cgctggccgc ggccgatcgg caccatcgag tcgatcgact tcaggccggt
     2161 cgccatcggc tggctcacgc tctggcgcgc gatcacgccg ggcgcgatct tctcgatcgg
     2221 cgccgacatc ttggtggcga tcggtccctt gccgtcgatc ggcgcgccga gcgcgttgac
     2281 gacgcggccg atcatggcct cgcctaccgg cacggagaga atctttccgg tgcgcttgac
     2341 ttcgttgcct tcgctaagct cggtgtagtc gcccagaatc ac
//
LOCUS       DASVHM010000460         7507 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_901128, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000460 DASVHM010000000
VERSION     DASVHM010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7507
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_901128"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..774)
                     /locus_tag="VF308_08700"
     CDS             complement(<1..774)
                     /locus_tag="VF308_08700"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent lyase/thiolase"
                     /protein_id="HEX7436773.1"
                     /translation="MYPFRCARSGSDDVDHVLEHRLGADAVLDRGGDDNPFVRYREGL
                     YAWHAARAHGLGDGAFVDLVRRLDDSIAAVDGHGFRVTPFGRQLALGERTGVELWLKD
                     ETGNVAGSHKARHLMGILLFLEVVEQGMKPPLAVASCGNAALAAAVLARAASRALQVF
                     VPPDAEPAVLDRLHTLGATVVACPRAPGERGDPCMRRFHEALAAGALPFCCQGNENGL
                     AIDGGQTLVFEMLASGAPPLDDLVVQVGGGALASACMQAF"
     gene            complement(828..2309)
                     /locus_tag="VF308_08705"
     CDS             complement(828..2309)
                     /locus_tag="VF308_08705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-5'-phosphate-dependent protein subunit
                     beta"
                     /protein_id="HEX7436774.1"
                     /translation="MNRHDTTITDRATYDRALEHFRTRRIALPTFAELAEPKRIGAAR
                     RGQLAGVDPDAADALNLFRVHWYNDAARTGLAEVPAHVVLPEALTGIASPIIVALGDR
                     FPMIHAHKVLPAYACLVSRLVTGRFDPARQRALWPSTGNYCRGGVAISRVVGCHGVAI
                     LPAGMSDERFAWLERWVTEPGDIIRTPGTESNVREIYDACAALSKDPVNVILNQFNEF
                     ANYLAHYAVTGRAFAHVFESVRARAPSLQLGAFVSASGSAGTLGAGDWLKEHHGAKIV
                     AVEALECPTMLYNGFGEHNIQGIGDKHIPYIHNVTNTDAAVAVSDHATDQLFVLFNDP
                     AGHALLRARGVGDDVIAALPHFGLSSICNIVAAIKTAKTLGLGAQQAIMTVATDGAAM
                     YTSEKPKAVAKHFGGRFDAARAAETFERHLAKASTEDVLVMGPTERDRIFNLGYFTWV
                     EQRGVSLADFEARRDQAFWRGLHGLLPAWDELITAFNRSSGAA"
     gene            complement(2321..3325)
                     /locus_tag="VF308_08710"
     CDS             complement(2321..3325)
                     /locus_tag="VF308_08710"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX7436775.1"
                     /translation="MSTAGFVNAHTHLYSGLAPFGMPASAEPPADFMAILERVWWRLD
                     RALDAQALRFSAQWYVAEALQLGTVGLIDHHESPNLIEGALDILADVCQAAGLPAVLC
                     YGATERNGGRDEARRGLAECRRFIETNQRPLVRGVVGLHASFTVSDDTIRDAAALCRD
                     LGTVLHVHVAEDAADVADARRRGWDGPLERLERLGALPPGSILAHGVKLSEPQVRRAD
                     ALGCWLVHNPRSNHGNRVGYAAALRASARVALGTDGYPSDLAAEHSALLAESEKHGDD
                     PAAVARRPQAGHALLAERFGGHTPLSAAADTASNIDLDALRAQATAEAQRLWTRMAQL
                     "
     gene            complement(3376..5991)
                     /gene="xdh"
                     /locus_tag="VF308_08715"
     CDS             complement(3376..5991)
                     /gene="xdh"
                     /locus_tag="VF308_08715"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR03311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004854 - xanthine dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0046415 - urate metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenium-dependent xanthine dehydrogenase"
                     /protein_id="HEX7436776.1"
                     /translation="MIEFVLNGSPQRVETRDDEWFLETLRERCGITSPKDGCSPQGQC
                     GACVVLVDGHPKTTCAMRARVADGKHVVTLDGLPAAERQQIADCFAATAGLQCGFCIP
                     GIALRAKSITDRDPAPTREAIAHALDGHLCRCTGYVKIIDAIELLAAAKRGEPIPPAC
                     TDGRVGQPLTRVGAAQTTLGDRPFVGDLTRPGMLHGALVLSPHPRARVLGIDTTRARA
                     LSGVHTIATAADVPGERWYGLLLNDWPGFVAEGEEVRCVGDVLAAVAAVDRHTAREAA
                     ALVDVSYEVLPPVLDPRRALAADAPRVNPQHENLLERSVVRRGDADAALAGSAHVVSG
                     TWATQRIEHLFLEPESALAEPMPDGALRLYTQGQGIFEDRRQVARFLGISADRIYVEL
                     VPNGGAFGGKEDMSVQAQTALLAQMTGAPVKLTLSREESIRLHPKRHSLTMDYTVGCD
                     ADGRLTAVKARLIGDSGAYASVGGKVLERAAGHSCGAYHVPHVDVDSQAVYTNNPPCG
                     AMRGFGANQVHFALEACMDLLAKKAGLDRWEIRWRNALRVGDTFTTGQVLEKSVGIRK
                     TLEAIKPHYDAALRDGRAVGIACGIKNSGIGNGVEEWGKARLVVEADGSVSLYNGYTE
                     MGQGLLTVLVQFAVEATGLPAAVFVPKVNSTFDLQCGQTTGSRGTLFSGRAVLAAAAK
                     LRVDLDAGHSLADLAGRVYAGDIVVRDTTALGAKVAKIKTHTTFGYATQLVILDATGR
                     VERVVAAHDAGRVVNPALASGQVEGAVHMGLGYALTEELRCENGMPVTFKMKEIGVLR
                     ARDMPQVDVILVEEPEPEGPMGAKGVGEIGLVPTAAAVAGALEAFDGIRRTTLPMKDS
                     PAARAMSVGFTLGTR"
     gene            complement(6699..>7507)
                     /locus_tag="VF308_08720"
     CDS             complement(6699..>7507)
                     /locus_tag="VF308_08720"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX7436777.1"
                     /translation="GFDIIAQGMSGIMLMTGHPGGAPTKVGIAMNDIACGVTTLSGIL
                     AAYIAKLRTGRGQFLETSLLEAGLAWTPWEFGAYFGSGELPTPTGSRHRRSSPYQAYR
                     TQDGYVTAGASNAKLWNNFCTMVCERPEWLTDTRFATAPSRLDNIDALEKEIEAVLMT
                     KPTAHWVEKLDAAEVPGGPVYGYDQIMNDPHIKARAMVVDMEHPKIGPMKTLGLPLKS
                     SSELTAIRKPAPWLGQHSGEVLREIGYSPGEIIELFARDVVYDKYPTDTR"
BASE COUNT         1087 a         2616 c         2653 g         1151 t
ORIGIN      
        1 gaaggcctgc atgcaggcgc tcgcgagcgc acccccaccg acctgcacga cgaggtcatc
       61 cagcggcggg gcaccgctgg cgagcatctc gaacaccagg gtctggccgc catcgatcgc
      121 cagtccgttc tcgttgccct ggcagcagaa cggcagcgcg ccggcggcga gtgcctcgtg
      181 aaagcggcgc atgcaggggt ccccgcgctc gcccggcgca cgcggacagg ccacgaccgt
      241 ggcgcccagt gtgtgcaggc gatcgagcac cgccggctcg gcatccggcg gcacgaagac
      301 ctgcagcgcg cgcgacgcgg cgcgggccag caccgccgcg gccaacgccg cgttgccgca
      361 gctggcgact gccagcggcg gcttcatccc ctgctcgacc acttcgagga acagcaggat
      421 gcccatcagg tggcgcgcct tgtgcgagcc ggcgacgttg ccggtctcgt ccttcagcca
      481 cagctcgacc ccggtacgct cgcccagtgc gagctgccga ccgaacggcg tcacccggaa
      541 accgtggccg tcgaccgccg cgatcgagtc atccagtcgg cgcaccaagt cgacaaacgc
      601 gccgtcgccg aggccgtgcg cgcgtgccgc atgccaagcg tacaggccct cgcgatagcg
      661 cacgaaaggg ttgtcgtcgc cgccgcggtc cagcaccgcg tcggcgccga gccggtgctc
      721 gagcacatgg tccacatcat cgctgccgct gcgcgcacag cggaacgggt acatcgtgcc
      781 cgcaggcggc tcccagccgc agccggcaca gaccagccgc gacccgctca cgctgcgccg
      841 ctgctgcggt tgaaggcggt gatcagctcg tcccaggccg gcagcaggcc gtgcagcccg
      901 cgccagaagg cctggtcgcg ccgcgcctcg aagtcggcga gcgagacgcc gcgctgctcg
      961 acccaggtga agtagccgag gttgaagatg cggtcacgct cggtcgggcc catcaccagc
     1021 acatcctcgg tcgacgcctt ggcgaggtgc cgctcgaagg tctcggccgc gcgtgcggcg
     1081 tcgaagcggc cgccgaagtg cttggcgacg gccttcggct tctcggacgt gtacatcgcg
     1141 gcgccatcgg tggcgacggt catgatcgcc tgctgcgcgc ccaggcccag cgtcttggcg
     1201 gtcttgatcg ccgcgacgat gttgcagatg ctcgacaggc cgaagtgcgg caatgctgcg
     1261 atcacgtcgt cgccgacgcc gcgtgcgcgc agcaacgcgt ggccggcggg gtcgttgaac
     1321 agcacgaaca gctggtcggt ggcgtggtcg gacaccgcaa cggcggcgtc ggtgttggtg
     1381 acgttgtgga tgtacgggat gtgcttgtcg ccgatgccct ggatgttgtg ctcgccgaag
     1441 ccgttgtaga gcatcgtcgg gcattcgagc gcctcgacgg cgacgatctt cgcgccgtgg
     1501 tgctccttga gccagtcgcc cgcgcccagc gtgcccgccg acccgctggc cgagacgaag
     1561 gcgcccagct gcagcgaagg agcacgcgcg cgcacgctct cgaacacatg cgcgaaagcg
     1621 cgcccggtga cggcgtagtg ggccaggtag ttggcgaact cgttgaactg gttgaggatg
     1681 acgttgaccg ggtccttgga cagggccgcg caggcgtcgt agatctcgcg cacgttgctc
     1741 tcggtgcccg gcgtgcggat gatgtcgccc ggctcggtga cccagcgctc cagccacgcg
     1801 aagcgctcgt cgctcatgcc tgcgggcagg atcgccacgc cgtggcagcc gacgacgcgc
     1861 gagatcgcca cgccgccgcg gcagtagttg ccggtggacg gccacagcgc gcgctggcgc
     1921 gccgggtcga agcggccggt gaccaggcgc gagacgaggc aggcataggc cggcagcacc
     1981 ttgtgcgcgt ggatcatcgg gaagcggtcg ccgagcgcga cgatgatcgg cgaggctatg
     2041 ccggtcagcg cctcgggcag caccacgtgc gccggcacct cggccaggcc ggtgcgcgcg
     2101 gcgtcgttgt accagtgcac gcggaagagg ttcagcgcgt cggccgcgtc gggatccacg
     2161 ccggcgagct gcccgcgccg cgcggcgccg atgcgcttgg gctcggccag ctcggcgaag
     2221 gtcggcagcg cgatgcgccg ggtgcggaag tgctcgaggg cgcggtcgta ggtcgcacgg
     2281 tcggtgatcg tcgtgtcgtg gcggttcatg gttctgccgt tcagagttgg gccatgcgcg
     2341 tccacagccg ctgggcctcg gccgtggcct gcgcgcgcag tgcgtcgagg tcgatgttgc
     2401 ttgccgtgtc cgccgcggcg gacaggggcg tgtgcccgcc gaaacgctcg gccagcagcg
     2461 cgtgaccggc ctgcggccgc cgcgccacgg cggcggggtc gtcgccgtgc ttctcggatt
     2521 ccgccagcaa cgcgctgtgt tcggccgcga ggtccgacgg atagccgtcg gtgccgagcg
     2581 cgacgcgcgc gctggcgcgc agcgctgcgg catagccgac gcgattgccg tggttcgagc
     2641 gcgggttgtg caccagccag cagccgagcg cgtcggcgcg gcgcacctgc ggttcactga
     2701 gtttcacgcc gtgcgcgagg atcgatccgg gcggcagtgc gccgagccgc tcgagccgct
     2761 ccagcgggcc gtcccagccg cggcgccggg catcggcaac gtcggcggca tcctccgcca
     2821 cgtgcacatg caggacggtg cccagatcac ggcacagcgc cgcggcgtcg cggatcgtgt
     2881 cgtccgacac cgtgaacgag gcatgcagcc cgaccacgcc gcgcaccagc ggccgctggt
     2941 tggtctcgat gaagcggcgg cattccgcga ggccgcgccg cgcctcgtcg cgcccgccgt
     3001 tgcgctcggt cgcgccgtag cagagcacgg ccggcaagcc cgccgcctgg cagacatcgg
     3061 ccaggatgtc gagcgcgcct tcgatcaggt tcggcgactc atggtggtcg atcagaccga
     3121 cggtgccgag ctgtagcgct tcggccacgt accactgcgc cgagaaccgc agcgcctgcg
     3181 cgtccagggc gcggtcgagc cgccaccaca cgcgctcgag gatggccatg aagtccgccg
     3241 gcggctcggc cgaggccggc atgccgaacg gcgccagccc cgaatacagg tgcgtgtgcg
     3301 cgttgacgaa gccggcggtg ctcacatggc cacgagcgca agtggcgctc gcttccacag
     3361 cagcgcccgc agcgctcacc tcgtccccag cgtgaagccc acgctcatcg cgcgcgcggc
     3421 gggcgagtcc ttcatcggca gcgtcgtgcg gcggatgccg tcgaaggcct ccagcgcgcc
     3481 ggccaccgct gcggcggtcg gcaccaggcc gatctcgccg acgcccttgg cgcccatcgg
     3541 gccctcgggc tcgggttcct cgaccaggat cacgtcgacc tgcggcatgt cgcgcgcgcg
     3601 cagcaccccg atctccttca tcttgaaggt caccggcatg ccgttctcgc agcgcaactc
     3661 ctcggtgagc gcgtagccca ggcccatgtg caccgcgcct tcgacctggc ccgaggccag
     3721 cgccgggttg acgacgcggc ccgcgtcgtg cgcggcgacg acgcgctcga cccggcccgt
     3781 agcgtcgagg atgaccagct gcgtcgcgta gccgaaggtg gtgtgcgtct tgatcttcgc
     3841 caccttcgcg ccgagcgcgg tggtgtcgcg cacgacgatg tcgccggcat agacgcggcc
     3901 ggccaggtcg gcgagcgagt gcccggcgtc aaggtcgacg cgcagcttgg cggcagcggc
     3961 gagcaccgcg cggccgctga acagcgtgcc gcgcgagccg gtcgtctggc cgcactgcag
     4021 gtcgaaggtc gagttcacct ttggcacgaa gaccgcggcc ggcaggccgg tggcctcgac
     4081 ggcgaactgc accagcaccg tcagcagccc ctggcccatc tcggtgtagc cgttgtagag
     4141 cgagacgctg ccgtcggctt cgacgaccag ccgggccttg ccccactcct cgacgccgtt
     4201 gccgatgccg ctgttcttga tgccgcaggc gatgcccacg gcgcggccgt cgcgcagcgc
     4261 cgcgtcatag tgcggcttga tcgcttcgag cgtcttgcgg atgccgaccg acttctccag
     4321 cacctgtccg gtggtgaagg tgtcgccgac gcgcagcgcg ttgcgccagc ggatctccca
     4381 gcggtcgagc ccggccttct tcgccagcag gtccatgcag gcttccagcg caaagtgcac
     4441 ctggttggcg ccgaagccgc gcattgcgcc gcagggcggg ttgttggtgt agacggcctg
     4501 cgagtcgacg tcgacgtggg gcacgtggta cgcgccacac gagtgcccgg ccgcacgctc
     4561 gagcaccttg ccgccgaccg atgcataggc gccggaatcg ccgatgagcc gcgccttgac
     4621 ggcggtcagc cggccgtcgg cgtcgcagcc gaccgtgtaa tccatcgtca gcgaatggcg
     4681 cttggggtgc agtcggatcg actcctcgcg gctgagcgtc agcttgaccg gcgcacccgt
     4741 catctgcgcc agcagcgcgg tctgggcctg caccgacatg tcctccttgc cgccgaaagc
     4801 gcccccgttc ggaaccagtt cgacgtagat gcgatccgcg ctgatgccga ggaagcgcgc
     4861 cacctgccga cgatcctcga agatgccctg gccttgcgtg tacaggcgca gcgcgccgtc
     4921 gggcatgggc tcggcgagcg cgctctcggg ctcgaggaac agatgctcga tgcgctgcgt
     4981 ggcccaggtg ccgctgacca catgcgcgct gccggcgagc gcggcgtcgg cgtcgccgcg
     5041 ccgcacgacc gagcgctcga gcaggttctc gtgctgcggg ttgacgcgcg gcgcgtccgc
     5101 ggcgagcgcg cgccgcgggt ccagcaccgg cggcagcact tcgtagctga cgtcgacgag
     5161 cgcggccgcc tcgcgcgcgg tgtggcggtc gaccgcggcg acggccgcca gcacgtcgcc
     5221 gacacagcgc acctcttcgc cctcggcaac gaagcccggc cagtcgttga gcagcagtcc
     5281 gtaccagcgc tcgccgggca cgtcggcggc ggtggcgatg gtgtgcacgc cggacagggc
     5341 gcgggcgcgc gtggtgtcga tgcccagcac gcgggcgcgc ggatggggcg acagcaccag
     5401 cgcgccgtgc agcatgccgg gccgggtcag atcgccgacg aagggccgat cgcccagcgt
     5461 ggtctgcgcg gcgccgacgc gcgtgagcgg ttggccgacg cggccgtcag tgcaggccgg
     5521 cgggatcggc tcgccgcgct tggccgcggc gagcaactcg atcgcgtcga tgatcttcac
     5581 gtagccggtg cagcggcaca ggtgcccgtc cagcgcgtgg gcgatggcct cgcgcgtcgg
     5641 cgcggggtcg cggtcggtga tcgacttggc gcgcagcgcg atgccgggaa tgcagaagcc
     5701 gcactgcagc ccggccgtgg cggcgaagca gtcggcgatc tgctggcgtt cggccgccgg
     5761 caggccgtcg agcgtgacga cgtgcttgcc gtcggcgacc cgggcgcgca tcgcgcaggt
     5821 cgtcttcgga tggccgtcga ccagcaccac gcaggcgccg cactggccct gcgggctgca
     5881 accgtccttc ggcgaggtga tcccgcagcg ctcgcgcagc gtctccagga accactcatc
     5941 gtcccgcgtc tcgacgcgct gcgggcttcc gttcagtacg aactcgatca tcatggtggt
     6001 gtaggcgcct gtcgcgcgag gcgtcgatgc cgcagatccg ccgtggggcc gacctcatgt
     6061 cccgacagcg tacaggtgtc tcgaccgccc gctttgagct tgaacaaggg cgtgcgacgc
     6121 ggtcgagccg ctcgtctcag ctcacgtccc cttccgttgt gccgatagcg aaggatccag
     6181 cccgccatac cggcggctgc aagtgtgaag gtcagcccgt tgccatcgtg gcccagtcat
     6241 cggttgccac ccgcgaatga ccgctgtcgc caaactctga tttgctcaat gagttcggcg
     6301 aacgtccggt tccaaggcag atcagtcagt cgaccagaaa atcgccacgg gctcctttgg
     6361 gtccctcagt ggacactgag ctcagccggt tcggcgcccg aaagcggagg taaggttgct
     6421 acgccgcgcg ttctaagcct gccgctgaaa gtgacgcgcg tggatggccg aatccaaatg
     6481 gctccgccac attcgcaatt gctcctatcg tcacgggttg ggtcgagagc ggtcacttcg
     6541 ccgttgtgct ttcaaaccgc cagaggtcca agagaagggg agtaactcag ggggtaagtg
     6601 gactcacgac ggtgggcccg tgccccacca ttgctcactt tccgatgaac tagcgattcc
     6661 cttcacccgc tccagtgaaa gatgctcgcg cggccagact atcgcgtgtc cgtggggtac
     6721 ttgtcgtaga cgacgtcgcg cgcgaacaat tcgatgattt cgccagggct gtagccgatc
     6781 tcacgcagca cttcccccga atgctggccg agccaaggcg ccggcttgcg aatggccgtc
     6841 agttcgctgc tggacttcaa gggcaacccg agcgtcttca tcggtccgat cttgggatgc
     6901 tccatgtcga ccaccatcgc cctcgccttg atgtgcgggt cgttcatgat ctggtcatag
     6961 ccatagacgg ggccgcccgg aacttcggcg gcgtcgagct tttcgaccca gtgggccgtc
     7021 ggcttcgtca tcagcacggc ttcgatctcc ttctcgagag cgtcgatgtt atcgagccgt
     7081 gacggtgcgg tcgcaaagcg cgtgtccgtg agccattcgg gccgctcgca caccatcgtg
     7141 cagaagttgt tccacagctt ggcgttgctt gcgccggcgg tgacataccc gtcctgcgtg
     7201 cgatacgcct ggtagggcga cgagcgccgg tggcggctgc cggtgggcgt cggcaactcg
     7261 cccgagccga agtaggcgcc gaattcccaa ggcgtccacg ccaagcccgc ttccagcagc
     7321 gaggtctcga ggaactggcc gcgacccgtt ctcagcttgg cgatgtaggc ggccagaatt
     7381 ccggacagcg tcgtcacgcc gcaggcgatg tcgttcatcg cgatgccgac cttggtcggc
     7441 gcgccgcccg ggtggcccgt catcagcatg atgccggaca tgccttgcgc gatgatgtcg
     7501 aagccgc
//
LOCUS       DASVHM010000461         2481 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1116717, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000461 DASVHM010000000
VERSION     DASVHM010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2481
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1116717"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1632)
                     /gene="carB"
                     /locus_tag="VF308_08725"
     CDS             complement(<1..1632)
                     /gene="carB"
                     /locus_tag="VF308_08725"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011298333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEX7436778.1"
                     /translation="MPRRTDLEAVLIIGAGPIIIGQACEFDYSGAQACKALREEGYKV
                     ILVNSNPATIMTDPEMADVTYIEPITWPMLEKIIAKERPLCGGGFALLPTMGGQTALN
                     CALDLHRHGVLARYGVEMIGASEQAIEKAEDRLKFKDAMTGIGLHSARSGIAHSMEEA
                     LVVQQRITREIGGTGFPMVIRPSFTLGGTGGGIAYNPEEFEQICKRGLDLSPSKELLI
                     EESLIGWKEFEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQTLSDKEYQLM
                     RNASIAILREIGVETGGSNVQFATNPADGRMVVIEMNPRVSRSSALASKATGFPIAKV
                     AAKLAIGYTLDELKNDITGGATPASFEPSIDYVVTKIPRFAFEKFPAADSHLTTQMKS
                     VGEVMAIGRTFQESFQKALRGLETGIDGLSERSTDREEIIQEIGEAGPERILYVADAF
                     RIGMSQQEVFEETAIDPWFLAQIHQLVQHEQAVLGRTVASLSRDEMRFLKQKGFSDRR
                     LATLLGTSQHEVREARHAMGVRPVYKRVDTCAAEFA"
     gene            complement(1625..>2481)
                     /gene="carA"
                     /locus_tag="VF308_08730"
     CDS             complement(1625..>2481)
                     /gene="carA"
                     /locus_tag="VF308_08730"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013901081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEX7436779.1"
                     /translation="TVAIANIDTRRLTRRLRSRGAQNGCILTLPVGEPVTVGHVAEAV
                     ARARNAPAMVGLDLAKEVSQAQAYEWRETEWVLGSGYGTLAAPRFAVVAYDYGIKKNI
                     LRMLASRGCKVTVVPAQTPAAQALKHRPDGIFLSNGPGDPEPCDYAIEATRELIESSI
                     PTFGICLGHQIMALAAGAKTFKMKFGHHGANHPVKDLDSGRVSITSQNHGFAVDPKTL
                     PSNLRQTHVSLFDGTLQGLARTDKPAFCFQGHPEASPGPHDIGYLFDRFIGLMEARPR
                     PAAGRAHA"
BASE COUNT          369 a          831 c          825 g          456 t
ORIGIN      
        1 ggcgaactcg gcggcgcagg tgtcgacccg cttgtagacc ggccgcacgc ccatcgcatg
       61 acgtgcctcg cgcacctcgt gctggctcgt gccaagcagc gtggcgaggc gccggtcgga
      121 aaagcccttc tgcttcagaa agcgcatctc atcgcgcgaa aggctcgcca ccgtgcgtcc
      181 cagcaccgcc tgttcgtgct ggacgagctg gtggatctgg gcgaggaacc acgggtcgat
      241 cgcggtttcc tcgaacactt cctgctggct catgccgatg cgaaacgcgt cggccacgta
      301 gaggatgcgc tccggcccgg cttcgccgat ctcctggatg atctcctcgc ggtcggtgct
      361 gcgctcggaa agcccgtcga tgccggtctc gaggccacgc aaggccttct ggaagctctc
      421 ctggaaggtc cggccgatcg ccatcacctc gccgaccgac ttcatctgcg tggtcaggtg
      481 cgaatcggcg gccgggaact tctcgaacgc gaagcgcgga atcttcgtca cgacgtagtc
      541 gatcgacggc tcgaaactcg ccggcgtcgc gccgccggtg atgtcgttct tcagctcatc
      601 gagcgtgtag ccgatggcga gcttcgcggc gaccttggcg atcggaaagc cggtcgcctt
      661 ggaggccagc gccgacgagc gcgagacccg cgggttcatc tcgatcacga ccatccggcc
      721 gtcggcgggg ttggtcgcga actgcacgtt cgagccgccg gtctcgacgc ctatctcgcg
      781 caggatcgcg atcgaggcgt tgcgcatcag ctggtattcc ttgtcggaga gggtctgcgc
      841 cggcgcgacc gtgatcgagt cgccggtgtg gatgcccatc ggatcgaggt tctcgatcga
      901 gcagacgatg atgcagttgt ccgccttgtc gcggaccact tccatctcga actccttcca
      961 gccgatcagg ctttcctcga tcagcagttc cttggacggc gacaggtcga gcccgcgctt
     1021 gcagatctgc tcgaattcct ccgggttgta ggcgatgccg ccgccggtgc cgccgagcgt
     1081 gaagctcggc cggatcacca tcggaaagcc cgtgccgccg atctcccggg tgatgcgctg
     1141 ctggacgacg agcgcctctt ccatcgagtg ggcgatgccc gagcgggccg aatgcaggcc
     1201 gatgccggtc atcgcgtcct tgaacttgag gcgatcctcg gccttctcga tcgcctgttc
     1261 gctcgcgccg atcatctcga cgccgtacct ggcgaggacg ccgtggcggt gcaggtcgag
     1321 ggcgcaattc agcgcggtct gaccgcccat cgtcggcagc agcgcgaagc cgccgccgca
     1381 caggggccgc tccttcgcga tgatcttctc gagcatcggc caggtgatcg gctcgatgta
     1441 ggtcacatcg gccatttccg ggtcggtcat gatcgtcgcc ggattgctgt tgacgaggat
     1501 gaccttgtag ccctcctcgc gcagcgcctt gcaggcctgg gccccggaat agtcgaattc
     1561 gcaggcctgg ccgatgatga tcgggccggc gccgatgatc agcacggctt cgaggtcggt
     1621 ccgcctaggc atgcgccctc ccggcggccg gcctcggccg tgcctccatc aggccgatga
     1681 accggtcgaa cagatacccg atgtcgtgcg gcccgggcga cgcctccggg tgaccctgga
     1741 agcagaacgc cggcttgtcg gtgcgggcca ggccctggag cgtgccgtcg aaaagagaga
     1801 cgtgcgtctg ccgcaggttc gaaggcagcg tcttcgggtc gaccgcgaaa ccgtggttct
     1861 ggctcgtgat gctgacccga ccgctgtcga gatccttcac cggatgattg gcgccatggt
     1921 ggccgaactt catcttgaag gtcttcgcgc ccgcggccag cgccatgatc tgatgcccga
     1981 ggcagatgcc gaaggtcggg atgctgctct cgatcagttc gcgcgtcgcc tcgatcgcat
     2041 agtcgcaggg ctcgggatcg cccgggccgt tgctcaggaa gatgccgtcg ggccgatgct
     2101 tcaacgcctg cgctgccggg gtttgcgccg gcaccacagt caccttgcag ccgcggctcg
     2161 cgagcatgcg caggatgttc ttcttgatcc cgtagtcgta ggcgacgacc gcgaaacgcg
     2221 gcgccgccag cgtgccgtag cctgagccga gcacccattc ggtctcgcgc cactcgtagg
     2281 cctgcgcttg gctgacctct ttggcgaggt cgagccccac catggcgggc gcgttgcgcg
     2341 ccctcgccac cgcttcggcg acgtgcccga ccgtgaccgg ttcgccgacg ggcagcgtca
     2401 ggatgcaacc gttctgggca ccccggctgc gcagccgccg cgtcaagcgc cgcgtgtcga
     2461 tgttggcgat ggccacagtg c
//
LOCUS       DASVHM010000462         1522 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_465802, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000462 DASVHM010000000
VERSION     DASVHM010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465802"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..1014
                     /locus_tag="VF308_08735"
     CDS             82..1014
                     /locus_tag="VF308_08735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013541090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crotonase/enoyl-CoA hydratase family protein"
                     /protein_id="HEX7436780.1"
                     /translation="MPVFKTVRIDKDPAQPRIARLLLDRPDKLNAINSAMPAEIRQAV
                     EWAEREDEVHVLVVEGAGRAFCAGYDLAEFAEGMDPSGTGDPASRQEKSPWDPMLDYA
                     AMKRYTEDFMALWRCSKPTIAKVHGHAVAGGSDIALSCDLLVMADDARIGYMPTRVWG
                     CPTTAMWTYRVGPARAKQLMFTGDTLSGAQAAAWGLANLAVPADRLDAETRRLAERIC
                     GVPRAHLAMHKLVVNQVMLTMGLEQSQMLATVFDGITRHNPEGLWFRRHAQVEGFKSA
                     VEWRDSGRPIPEGDEARALIADLERRLAEARAAR"
     gene            complement(1033..>1522)
                     /locus_tag="VF308_08740"
     CDS             complement(1033..>1522)
                     /locus_tag="VF308_08740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019653362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436781.1"
                     /translation="GLGFDGALLEFAEPGAIRSASLRIFDRSFAVTYWLQAVAIGIGL
                     FGIGASFSAQVLARRKEFGLLAHLGFTRAQVRSVVAAECAVWTAVGAVLGLLLGLAVS
                     VVLVKVVNPQSFHWTMDLTVPWARLAALCGAVLVAGTVTGWLAARGAASRQMALAVKE
                     DW"
BASE COUNT          257 a          532 c          529 g          204 t
ORIGIN      
        1 cggtcaactg agtgaatccg gacactcgtg tccggattca ctcgatcggc ttctgtcgca
       61 gcgcacctcg aggagacgcc gatgcccgta ttcaagactg tccggatcga caaggatccg
      121 gcgcaacccc ggatcgcccg gctccttctc gaccggcccg acaagctcaa cgcgatcaac
      181 agcgcgatgc cggcggagat ccgccaggcg gtcgaatggg ccgaacgcga ggacgaggtt
      241 cacgttctcg tcgtcgaagg cgcgggtcgc gcgttttgcg ccggctacga cctcgcggag
      301 tttgccgaag ggatggaccc gtcgggcacc ggcgaccctg cgtcgcgcca ggagaaatcg
      361 ccctgggatc cgatgctcga ctacgccgcg atgaagcgct acaccgaaga cttcatggcg
      421 ctgtggcgct gctcgaagcc gacgatcgcg aaggtgcacg gccacgcggt cgcgggcggc
      481 agcgacatcg cgctcagctg cgacctgctc gtgatggccg acgatgcgcg catcggctac
      541 atgccgacgc gcgtctgggg ctgcccgacg accgcgatgt ggacttaccg cgtcggcccg
      601 gcacgggcca agcagctgat gttcaccggc gataccctga gcggcgcgca ggccgccgcg
      661 tggggcctcg ccaacctggc ggtgccggcg gatcggctcg atgccgagac ccggcgtctc
      721 gccgagcgca tctgcggcgt accgcgcgcc catctcgcga tgcacaagct ggtcgtcaac
      781 caggtcatgc tgacgatggg gctcgagcaa tcgcagatgc tcgcgaccgt cttcgacggc
      841 atcacgcggc acaacccgga aggcctgtgg ttccgacgtc atgcgcaggt cgagggtttc
      901 aagagcgctg tcgaatggcg cgacagcggg cggccgattc ccgagggcga cgaggcccgc
      961 gccctcatcg ccgatctcga gcgccggctg gccgaagcgc gcgcggcacg gtgaggtcgc
     1021 gcgcccgtcc ggctaccagt cttccttgac cgcgagcgcc atctggcgcg atgccgcgcc
     1081 gcgcgcggcg agccagccgg tcacagtgcc ggcgacgagc acggccccgc acaacgcggc
     1141 caagcgggcc cagggcacgg tcaggtccat ggtccagtgg aagctctgcg ggttgacgac
     1201 cttgaccagc accacgctga cggcgagacc gagcagcagg ccgaggaccg caccgaccgc
     1261 ggtccacacc gcgcattcgg cggcgacgac gctgcgcacc tgtgcgcgcg tgaaaccgag
     1321 gtgcgcgagc agcccgaact ccttgcggcg cgcgagcacc tgggccgaga agctcgcgcc
     1381 gattccgaac aggccgatgc cgatcgcgac cgcttggagc cagtacgtca ccgcgaagct
     1441 gcgatcgaag atgcgcagcg acgcgctgcg gatcgcgccg ggctcggcga actcgagcag
     1501 cgcgccgtcg aagccgaggc cg
//
LOCUS       DASVHM010000463         3604 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1043846, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000463 DASVHM010000000
VERSION     DASVHM010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3604
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1043846"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1056
                     /gene="mraY"
                     /locus_tag="VF308_08745"
     CDS             <1..1056
                     /gene="mraY"
                     /locus_tag="VF308_08745"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019574104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEX7436782.1"
                     /translation="VFGPWVIRRLAALKIGQPIRSYGVESHQAQSGTPTMGGVLILLG
                     IGVSTLLWFDWSNRFVWIVMVVTIGFGAIGWVDDWRKVVGKSPEGMRSGEKYFWQSVI
                     GIIAALYLAFSVSETSNLRVLELFLRWVQSGFSNDLPPKADLIVPFFKTISYPLGVFG
                     FIALTYFVIVGASNAVNLTDGLDGLAIMPVVMVGSALGVFAYITGNSVYSRYLLFPYI
                     PGAGELLIFCSAMAGAGLAFLWFNTHPAQVFMGYVGALALGGALGTIAVITRQEIVLG
                     IMGGVFVVEALSVMAQVIWFKYTRRRYGEGRRFFKMAPLHHHFEKSGWKETQVVVRFW
                     IITIMLCLVGLASLKLR"
     gene            1056..2603
                     /gene="murD"
                     /locus_tag="VF308_08750"
     CDS             1056..2603
                     /gene="murD"
                     /locus_tag="VF308_08750"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEX7436783.1"
                     /translation="MKTLNHTSVLVLGLGESGLAMARWAARSGASVRVWDSRESPPNA
                     AALREHVPFAQLFSGPLEADAIAAGTLVLKSPGLAPTDPRIAAPLAAAVARGATLLNE
                     LDLFTRALADLKAAQDYAPKVIAITGTNGKSTTTAMAAQLIARTGKRVAVAGNIGPTM
                     LQTLADALDAGVLPEVWVLELSSFQLDGVQGFEPTAATVLNITQDHLDWHGSMAAYAA
                     AKARVFGERAVMVVNRDDARVEALVPAAAPPRPAKPARGRSPRPVERRVVRFGLTAPQ
                     CPGDYGLVVDNGMAWLVRALPDDETARRGGRAEGPAHDITLQHLMPADALRIRGRHNA
                     ANALAALALAAAIGCPLAPMLHGLREYRGEPHRVEYITAIDAVDAFDDSKGTNVGATV
                     AALDGLGDDKAPGKLVVILGGDGKGQDFTPLLEPVRRHARAVATIGRDAALIEAVLET
                     SGVTMQRHPTLEAATRWCFEQARAGDAVLLSPACASLDMFRNYPHRAAVFVAEVHAIA
                     AHHGVAA"
     gene            2600..>3604
                     /locus_tag="VF308_08755"
     CDS             2600..>3604
                     /locus_tag="VF308_08755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative peptidoglycan glycosyltransferase FtsW"
                     /protein_id="HEX7436784.1"
                     /translation="MNASSAWGGLAGWLARLSAGTRRRASSAGARNPGGSRAASAEVI
                     PVREWISVDPGQPARLLSFDRTLVCVVVAMLALGLVMVYSASIALPDNPKFARYAPTY
                     FLTRHIASIAIALLAGLVVVQVPVQVWEKASPWIFVGALLLLVLVLLPFIGRSMNGAR
                     RWIPLAFMSFQPSELGKVAIAMYAAGYMVRRMDVKENFFRAVFPMAISIAVVGLLLLA
                     EPDMGAFMVIAAIAMGILFLGGVNGRMFLLITGVLIGAFVLMISLSEWRRERIFAYLN
                     PWDEKYTLGKAYQLSHSLIAFGRGEIFGQGLGSSVEKLHYLPEAHTDFLLAVIGEELG
                     F"
BASE COUNT          506 a         1248 c         1226 g          624 t
ORIGIN      
        1 gtgttcggcc cgtgggtgat ccgccgcctg gccgccctga agatcggcca gccgatccgc
       61 agctacggcg tcgaatcgca tcaggcccag agcggcacgc cgaccatggg cggggtgctg
      121 atcctgctcg gcatcggcgt ctcgaccctg ctctggttcg actggtcgaa ccggttcgtg
      181 tggatcgtga tggtcgtgac gatcggcttc ggcgcgatcg gctgggtcga cgactggcgc
      241 aaggtcgtcg gcaagagccc ggaaggcatg cgttcgggcg agaagtactt ctggcagtcg
      301 gtgatcggca tcatcgccgc gctctacctc gccttcagcg tcagcgaaac ctcgaacctg
      361 cgcgtgctcg agctgttcct gcgctgggtg cagagcggct tctcgaacga cctgccgccg
      421 aaggctgacc tgatcgtgcc cttcttcaag accatcagct atccgctcgg ggtgttcggc
      481 ttcatcgcct tgacctattt cgtcatcgtc ggcgcgagca acgcggtcaa cctcaccgac
      541 gggctcgacg gcctggcgat catgccggtg gtgatggtcg gctccgcgct cggcgtcttc
      601 gcgtacatca ccggcaactc ggtctacagc cgctacctgc tctttcccta cattcccggc
      661 gccggcgaac tgctgatctt ctgctcggcg atggccggcg cgggcctcgc cttcctctgg
      721 ttcaacaccc atccggccca ggtgttcatg ggctacgtcg gcgcgctcgc gctcggcggc
      781 gcactcggca cgatcgccgt catcacgcgc caggagatcg tgctcggcat catgggcggc
      841 gtcttcgtcg tcgaggcgct gtcggtgatg gcccaggtga tctggttcaa gtacacgcgc
      901 aggagatacg gcgagggccg gcgcttcttc aagatggccc cgttgcacca tcatttcgag
      961 aagtcgggct ggaaggaaac gcaggtcgtc gtgcgtttct ggatcatcac gatcatgctc
     1021 tgcctggtcg gcctggcgag cctgaagctg cgctgatgaa gaccctgaac cacacctccg
     1081 tgctcgtgct gggtctcggc gagtcagggc tcgcgatggc gcgctgggcg gcgcgatcgg
     1141 gcgcatccgt gcgggtctgg gactcgcgcg agtcgccccc gaacgcggcc gcgttgcgcg
     1201 agcacgtgcc tttcgcgcag cttttctcgg ggccactgga agccgacgcc attgccgccg
     1261 gcacgctggt gttgaagagc cccggcctcg cgccgaccga cccgcgcatc gccgcgccac
     1321 tggcggccgc ggtggcgcgc ggcgccaccc tgttgaacga gctcgacctc ttcacgcgcg
     1381 ccctcgccga cctgaaggcc gcgcaggact atgcgccgaa ggtgatcgcg atcaccggca
     1441 ccaacggcaa gagcacgacc accgcgatgg ccgcccaact gatcgcgcgc accggcaagc
     1501 gcgtggcggt ggccggcaac atcggcccga ccatgctgca gacgctggct gacgccctcg
     1561 acgcgggtgt gctgccggag gtctgggtgc tcgaactctc gagcttccag ctcgacggcg
     1621 tgcagggctt cgagccgact gcggcgaccg tcctcaacat cacccaggat catctcgact
     1681 ggcacggctc gatggcggcc tacgcggcgg ccaaggcgcg cgtcttcggc gagcgcgcgg
     1741 tcatggtcgt caaccgcgac gacgcgcggg tcgaagcgct ggtccccgcc gccgcaccgc
     1801 cccggccggc gaagcccgcg cggggccgga gcccgcgtcc ggtcgagcgc cgcgtcgtgc
     1861 gcttcggcct gacagcgccg cagtgcccgg gcgactacgg cctcgtcgtc gacaacggca
     1921 tggcctggct ggtgcgcgcg ctccccgacg atgaaacagc gcgtcgcggc gggcgcgctg
     1981 aaggaccggc gcacgacatc accttgcagc acctcatgcc cgccgacgcg ctgcgcatcc
     2041 gcggacgcca caacgccgcc aatgcgctgg ccgcgctggc gctcgccgcc gcgatcggtt
     2101 gtccgctcgc gccgatgctg cacgggctgc gcgaataccg cggcgagccg catcgcgtcg
     2161 aatacatcac cgcgatcgac gctgtcgatg cgttcgacga cagcaagggc acgaatgtcg
     2221 gcgcgacggt cgcggccctg gacgggctcg gcgacgacaa ggcgccgggc aagctggtcg
     2281 tgatcctcgg tggcgacggc aagggccagg acttcacgcc cttgctcgag ccggtacgcc
     2341 gccatgcccg cgcggtcgcg acgatcgggc gcgacgcggc gttgatcgag gccgtgctcg
     2401 agacctccgg cgtgacgatg cagcgccatc cgacgctcga agcggccacg cgctggtgct
     2461 tcgaacaggc acgggccggc gacgccgtgc tgctcagccc ggcttgcgcg agcctcgaca
     2521 tgtttcgcaa ctatccgcat cgcgccgcgg tgttcgtcgc cgaagtccac gccattgcgg
     2581 cgcaccacgg agtggcggca tgaacgcgtc gagcgcctgg ggcgggcttg ccggatggct
     2641 ggcgcggctt tcggccggca cgcggcgcag ggcttcgtcg gcgggcgcgc gcaatccagg
     2701 cggctcgcgc gccgcgagcg ccgaggtgat tccggtgcgc gaatggatca gcgtcgaccc
     2761 cggacaaccg gcgcggctgc tgagcttcga tcggacgctc gtctgcgtcg tcgtcgcgat
     2821 gctcgcgctc ggcctggtca tggtgtacag cgcctcgatc gcgctgcccg acaacccgaa
     2881 gttcgcgcgc tacgccccga cctacttcct gacgcgccac atcgcgtcga tcgcgatcgc
     2941 gctccttgcc gggctcgtcg tcgtgcaggt gccggtccag gtctgggaaa aggcctcgcc
     3001 gtggatcttc gtcggcgcgc tgctgctgct ggtgctggtg ctgctgccct ttatcggccg
     3061 gagcatgaac ggagcgcggc gctggatccc gctggcgttc atgagcttcc agccctcgga
     3121 actcggcaag gtcgcgatcg cgatgtacgc ggccggctac atggtgcggc gcatggacgt
     3181 gaaggagaac ttctttcgcg ccgtgttccc gatggcgatc tcgatcgcgg tcgtcggcct
     3241 cctgctcctc gccgagcccg acatgggcgc cttcatggtg atcgccgcga tcgcgatggg
     3301 gatccttttc ctcggcggcg tcaacggccg catgttcctg ctgatcaccg gcgtgctgat
     3361 cggtgctttc gtgctgatga tctcgctcag cgaatggcgg cgcgaacgca tcttcgcgta
     3421 cctgaatccg tgggacgaga agtacacgct cggcaaggcc taccagcttt cgcattcgct
     3481 gatcgccttc gggcgcggcg agatcttcgg ccagggcctc ggctcgagcg tcgagaagtt
     3541 gcattacctg ccggaagcgc ataccgattt cctgctcgcc gtgatcggcg aggaactcgg
     3601 cttc
//
LOCUS       DASVHM010000464         5002 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_106175, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000464 DASVHM010000000
VERSION     DASVHM010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5002
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106175"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            171..482
                     /gene="rplU"
                     /locus_tag="VF308_08760"
     CDS             171..482
                     /gene="rplU"
                     /locus_tag="VF308_08760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008116344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEX7436785.1"
                     /translation="MHAVIKTGGKQYRVAAGEKIKVERLVADIGQQVTLGQVLAIGSG
                     ADMAVGTPFLAGANVVATVVAQGRHDKVRIFKMQRRKHYQKRQGHRQAFTEIEISAIN
                     A"
     gene            517..774
                     /gene="rpmA"
                     /locus_tag="VF308_08765"
     CDS             517..774
                     /gene="rpmA"
                     /locus_tag="VF308_08765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003058534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEX7436786.1"
                     /translation="MAQKKGGGSTRNGRDSQPKMLGVKVFGGQKVPAGSIIVRQRGTK
                     FHPGSNVGIGKDHTLFALVDGEVSFAIKGPQNRQTVFVRAA"
     gene            916..1992
                     /gene="obgE"
                     /locus_tag="VF308_08770"
     CDS             916..1992
                     /gene="obgE"
                     /locus_tag="VF308_08770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEX7436787.1"
                     /translation="MKFVDEATIDVVAGQGGNGCMSFRREKSIPFGGPNGGDGGRGGS
                     VFAVGDRNLNTLIDYRYARRHEARNGENGRGSDQYGAAAQDIVLRMPMGTIIRDAETG
                     EAIAELLVPGEKVLIVKGGDGGFGNMHFKSSTNRAPRQKTPGWPGEQKKLKLELRVLA
                     DVGLLGMPNAGKSTLIAAISNARPKIADYPFTTLHPNLGVVRVAPEQSFVVADVPGLI
                     EGAAEGAGLGHQFLRHLQRTHLLLHVVDFAPFDESVDPVAQARAIVAELKKYDPDLHA
                     KPRWIVLNKLDMVPPEECERRVKDFVKRLRWKGPVFQISALTREGCEPLIRAVYEHVA
                     KVRNVVADDPDPRFDAASPVAEGR"
     gene            1989..3107
                     /gene="proB"
                     /locus_tag="VF308_08775"
     CDS             1989..3107
                     /gene="proB"
                     /locus_tag="VF308_08775"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEX7436788.1"
                     /translation="MSALLTNARRIVVKVGSSLVTDEGRGVDPEAVGNWCRQMATLAG
                     QGREIVMVSSGAIAEGMKRLGWTARPKGIHELQAAAAVGQMGLAQIYESRLRELGMRS
                     AQVLLTHADLADRERYLNARTTLLTLLGLKVIPVINENDTVVNDEIKFGDNDTLGALV
                     ANLLDADALVILTDQKGLYSADPRKDPAARLIAEAQAGSPELETMAGGAGSALGRGGM
                     LTKVLAAKRAARSGASTIIAWGREPDVLLRLAAGEAIGTTLRASTQKRAARKQWMSDH
                     LQLRGAVVVDAGAAVKVRDDGKSLLPIGVVEVQGDFHRGDVIAVRAPDGAELARGLAN
                     YSSSEARLIARRPSSEFERLLGFTGEPELIHRDNLVLT"
     gene            complement(3144..3764)
                     /locus_tag="VF308_08780"
     CDS             complement(3144..3764)
                     /locus_tag="VF308_08780"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006296167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEX7436789.1"
                     /translation="MLDREGFRPNVGIILLNQRNQVFWGKRIRTHSWQFPQGGINYGE
                     TPEQAMYRELHEEVGLLPDHVRIVARTRDWLRYEVPTHFIRRDARGHYRGQKQIWFLL
                     QLTARDCDMNLRATDHPEFDAWRWNEYWIPLEVVIEFKRDVYQMALTELARFLPRGAQ
                     HNRYLRSGMRPHHRDEGPERRGGGACEPAPEAATTTPIVPPVEPRL"
     gene            3885..>5002
                     /gene="proS"
                     /locus_tag="VF308_08785"
     CDS             3885..>5002
                     /gene="proS"
                     /locus_tag="VF308_08785"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007854564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEX7436790.1"
                     /translation="MKASQFFISTQKEAPADAEVVSHKLMLRAGFIKRLSAGIYSYMP
                     MGLRVIRKVEAIVRDEMNRAGAVELLMPVVQPAELWQESGRFQKYGPELLRVKDRHER
                     DFVIQPTSEEVITDIARQELRSYRALPRNFYHIQTKFRDERRPRFGVMRGREFTMKDA
                     YSFDRDFESGRRSYDAMFKAYCAIFDRMGLQYRAVTADSGAIGGDVSQEFQVIADTGE
                     DAIVYSRDSDYAANIELAEALPLISARAAPTQALTKTPTPGKSTCEDVVALLGLALTS
                     SVKSLVLATDKKSDTGDLLETTIWLLLVRGDHSLNEVKAAKVEGLKGGFRFATVAEIE
                     DRFGCKPGYLGPIDTKKPIKVVADRTVAAMSDFVCGAN"
BASE COUNT          897 a         1625 c         1692 g          788 t
ORIGIN      
        1 ggcctgcgct tggcgcgccg gctagctcga ggccttgcct gcgccgccgc cgccggcgag
       61 gctcgtgcta tactaataag ttctgcgcat aaagcgcgcc acgccttttc atgtccgaca
      121 ccagtgtcgg gcgactgacc aggggccgtg gactcatcga aagggccgag atgcacgcag
      181 tcatcaaaac cggtggcaag caatacaggg tcgctgccgg cgaaaagatc aaggtcgagc
      241 gcttggtcgc cgacatcggc cagcaggtca ccctcggcca ggtgctggcg atcggcagcg
      301 gcgccgacat ggcggtgggc accccgtttc tggctggcgc gaacgtggtc gcgaccgtcg
      361 tcgcccaagg ccggcacgac aaggtgcgca ttttcaagat gcagcgccgc aagcactacc
      421 agaagcgcca gggccatcgt caggcgttca ccgagatcga gatcagcgcg atcaacgcct
      481 gattcgcaga aaattcagtc atccaggagc tgaaacatgg cacagaagaa gggcggcggt
      541 tcgaccagaa acggccgcga ctctcaaccg aaaatgctcg gcgtgaaggt gttcggcggc
      601 cagaaggttc cggccggctc catcatcgtg cgccagcgcg gcaccaagtt tcaccccggc
      661 tcgaacgtcg gcatcggcaa ggatcacacc ctgttcgcac tcgtcgacgg cgaggtgagc
      721 ttcgcgatca aaggtccgca gaaccgccag acggtcttcg tccgcgccgc ctgaacgccg
      781 gtcgcgcgcg agcggcgcac tctgcaagcc ccggctcgcc ggggcttctt catttgcggc
      841 gctgacttac catggcggcc ggtgcgctcc ggcgcaacgc cttcgcgctg caccccttgc
      901 caaaccacag gaatcatgaa gttcgtcgac gaagccacca tcgatgtcgt cgccggtcag
      961 ggcggcaacg gctgcatgag ctttcggcgc gagaagtcca tcccgttcgg cggcccgaat
     1021 ggcggcgacg gcgggcgcgg cgggagcgtc tttgccgtcg gtgaccgcaa cctcaacacc
     1081 ttgatcgact accgctatgc gcgccggcac gaggcgcgca atggcgagaa cgggcgcggc
     1141 tccgatcagt acggtgcggc cgcacaggac atcgtgctgc gcatgccgat gggcacgatc
     1201 atccgcgatg ccgaaaccgg cgaggcgatc gccgagttgc tcgttccggg tgaaaaggtg
     1261 ctgatcgtca agggcggcga cggtggtttc ggcaacatgc acttcaaaag cagcacgaac
     1321 cgcgcgccgc gccagaagac gccgggctgg ccgggcgagc agaaaaagct caagctcgag
     1381 ttgcgtgtgc tcgccgatgt cgggctgctc ggcatgccca acgcgggcaa gtcgacgctg
     1441 atcgccgcga tctcgaacgc gcggccgaag atcgccgact atccgttcac gaccttgcat
     1501 ccgaacctcg gcgtcgttcg ggtcgcaccc gagcagagtt tcgtcgtcgc cgacgtcccc
     1561 gggctcatcg agggcgcggc ggagggtgcc ggcctcgggc accagttcct gcgccacctg
     1621 cagcgcaccc acctgttgct gcacgtcgtc gacttcgcgc cgttcgacga gagcgtcgat
     1681 ccggtcgcgc aggcgcgcgc catcgtcgcc gaactgaaga agtacgaccc ggacctgcat
     1741 gccaagccgc gctggatcgt gctgaacaag ctcgacatgg ttccccctga ggagtgtgag
     1801 cggcgcgtca aggatttcgt gaagcgactg aggtggaaag gcccggtgtt ccagatctcg
     1861 gccttgacgc gcgaaggctg cgaacccctg atacgcgccg tgtacgagca tgtcgcgaag
     1921 gtgcgcaacg tcgtggcaga cgatccggac ccgcgcttcg acgctgcaag cccggtcgcg
     1981 gaggggcgat gagcgcgctg ctgacgaacg cccggcgcat cgtcgtcaag gtcggctcga
     2041 gcctcgtcac cgacgagggc cgtggcgtcg accccgaagc cgtgggcaac tggtgccggc
     2101 agatggcgac gctggccggt caaggccgcg agatcgtgat ggtgtcgagc ggggcgatcg
     2161 ccgaaggcat gaagcgcctc ggctggaccg cgcggccgaa gggcatccac gagttgcagg
     2221 ccgcggccgc tgtcggccag atgggtctgg cccagatcta cgagtcgcgc ttgcgcgaac
     2281 tgggcatgcg cagcgcgcag gtcctgctga cccacgccga cctggccgat cgggagcgct
     2341 atctgaacgc gcggacgacc ttgctgaccc tgctcggact caaagtcatc ccggtcatca
     2401 acgaaaacga cacggtggtc aacgacgaaa tcaagttcgg cgacaacgac acgctcggcg
     2461 cgctcgtcgc caatctgctc gacgccgacg cgctcgtcat cctgaccgat cagaaggggc
     2521 tctactcggc cgacccgcgc aaggatccgg ccgcccgcct catcgccgag gcgcaagccg
     2581 gctcacccga actcgagacg atggcaggcg gcgccggatc ggcgctcggc cgcggcggca
     2641 tgttgaccaa ggtgctcgcc gccaagcgcg cggcgcgcag cggtgccagc acgatcatcg
     2701 cttgggggcg tgagcccgac gtgctgctgc gcctcgcggc aggtgaggcg atcggcacca
     2761 cgttgcgggc ctcgacgcag aaacgggccg cgcgcaagca gtggatgagc gaccatctgc
     2821 agctgcgcgg cgcggtggtc gtcgacgctg gcgccgccgt caaggtccgc gatgacggca
     2881 agagcctgct gccgatcggc gtcgtcgaag ttcagggcga cttccaccgc ggcgacgtga
     2941 tcgcagtgcg cgcccccgat ggcgcggagt tggcgcgcgg gctcgccaac tacagcagca
     3001 gcgaagcgcg cttgattgcg cgccggccgt cgagcgagtt cgaaaggctg ctcggcttca
     3061 ccggcgaacc cgaactcatc caccgggaca acctcgtcct gacctgagga cgacgctccg
     3121 cccgcgagcg ccgcggggcg gccctagagg cggggctcga cgggtgggac gatgggcgtc
     3181 gtcgtcgcgg cctcgggggc cggctcgcag gcgccgccgc cgcggcgctc gggtccttcg
     3241 tcgcgatggt gcggacgcat gcccgagcgc aggtagcggt tgtgctgcgc gccgcgcggc
     3301 aggaagcggg cgagctcggt caacgccatc tggtacacgt cgcgcttgaa ctcgatcacg
     3361 acctcgagcg ggatccagta ttcgttccag cgccaggcgt cgaactcggg gtggtcggtc
     3421 gcacgcaggt tcatgtcgca gtcgcgagcg gtgagctgca gcaggaacca gatctgcttt
     3481 tgcccgcggt agtgaccgcg cgcgtcgcgc cggatgaagt gcgtcggcac ctcatagcgc
     3541 agccagtcgc gggtgcgcgc gacgatgcgc acatggtcgg ggaggagccc gacttcctcg
     3601 tgcaactcac ggtacatcgc ctgctcaggc gtctcgccgt aattgatgcc cccttgcggg
     3661 aactgccagg agtgggtgcg tatgcgcttg ccccagaaca cctggtttcg ctggttgagc
     3721 aggatgatgc cgacgttggg tctgaaccct tcacggtcga gcataatcaa cctcaattct
     3781 ttcgttgaat ccattattgc actggcattg cgggagtcaa acctacgggt ttcccgcaaa
     3841 cccacgccag atcgcaacgc ggcagttctg ccaatcgccc gcccatgaaa gccagccagt
     3901 tcttcatctc gacgcagaag gaagcacctg ccgatgcgga ggtcgtgagc cacaagctca
     3961 tgctgcgtgc cggattcatc aagcgcctgt cggcgggcat ttacagctac atgccgatgg
     4021 gtctgcgggt catccgcaag gtcgaggcga tcgtgcgcga cgagatgaac cgtgccgggg
     4081 ccgtcgagct cctgatgccg gtcgtgcagc cggccgaact ctggcaggaa agcgggcgct
     4141 tccagaagta cgggcccgag ctgctgcggg tgaaggatcg ccatgagcgc gacttcgtga
     4201 tccagccgac cagcgaggaa gtcatcaccg acatcgcgcg ccaggagctg cgcagctacc
     4261 gcgcgttgcc gaggaatttc tatcacatcc agaccaagtt tcgcgatgag cggcggccgc
     4321 gcttcggcgt gatgcgcggg cgcgaattca cgatgaagga tgcgtattct tttgatcgcg
     4381 acttcgagtc cggtcgccgc agctacgacg cgatgttcaa ggcctactgc gcgatcttcg
     4441 accgcatggg cctgcagtat cgcgccgtga ccgcggacag cggcgcgatc ggcggcgatg
     4501 tgtcgcagga attccaggtc atcgccgaca ccggcgagga cgcgatcgtc tactctcgcg
     4561 acagcgacta cgccgccaat atcgagttgg ccgaagcgtt gccgctgatc tccgcgcgcg
     4621 ccgcgccgac acaggcgttg acgaagacgc cgacgccggg caagagtacc tgcgaggacg
     4681 tcgtcgcgct gttgggccta gcgctgacgt cgtcggtgaa gtcgctggtg ctggccaccg
     4741 acaagaagag cgacacgggc gatcttctcg agaccaccat ctggctgctg ctggtgcgcg
     4801 gcgaccacag cctcaacgaa gtgaaggccg ccaaggtcga aggcttgaag ggggggttcc
     4861 gctttgcgac ggtagccgag atcgaagatc gcttcggctg caagccgggc tacctgggcc
     4921 cgatcgacac gaagaagccg atcaaggtcg tcgccgaccg cacggtagcc gcgatgagcg
     4981 acttcgtctg cggtgccaac ga
//
LOCUS       DASVHM010000465         6564 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_973189, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000465 DASVHM010000000
VERSION     DASVHM010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6564
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_973189"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1276)
                     /locus_tag="VF308_08790"
     CDS             complement(<1..1276)
                     /locus_tag="VF308_08790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HEX7436791.1"
                     /translation="MTFPLGSLRGDGADPVPSRDPSAAFAPHWREQVALLVGAVVWLL
                     ALLALATHSAADPGFSTSGAGGPINNRAGVLGAWLSDVAFFVAGYSVWWTILVGARAW
                     LGALARTLRAHSGAAPEAPAHALPAWTMGLGLALLLAASASLEWTRLYQWEGQVAGGN
                     AGGVLGLVLGRASQNLLGFAGSGVLWIAVLVAGASLALRFSWLRVADSIGLSVESLRT
                     RRVERIERAEDARLGAEAIRERGEVFEVEQELHEQHLPIVIEPTLVDVPKSTRVVKER
                     QKPLFSELVDTKLPQVDLLDSAPQRVEGVSAESLEMTSRLIEKRLKDFGVEVRVVAAS
                     PGPVITRYEIEPALGVKGAQVVSLAKDLARSLGLVSIRVVETIPGKTTMALELPNAKR
                     QMIRLSEVLGSQAYADPGSQLTIGLGKDIVGLP"
     gene            complement(1401..2066)
                     /locus_tag="VF308_08795"
     CDS             complement(1401..2066)
                     /locus_tag="VF308_08795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEX7436792.1"
                     /translation="MAMLSNLDLIRRVPLFSLLTNEQAQGIADSVVKRRFRRGEIVVE
                     HNKKSNALFILLTGRARVLTADARGREVILAVLQSGDYVGEMSLIDNEPHSATVRAEV
                     QTDMLILGRAEFARCLPENSSLSYAIMRGLVQRLRSADRQIESLALLDVYGRVARTLL
                     DMSEMDGEIKVIRNKVSRQDLAKVVGASREMVSRVMKDLEGRGMVQTQENGWVVIKEQ
                     LTG"
     gene            2223..3176
                     /gene="trxB"
                     /locus_tag="VF308_08800"
     CDS             2223..3176
                     /gene="trxB"
                     /locus_tag="VF308_08800"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEX7436793.1"
                     /translation="MPLPSHHAGVLILGSGPAGYTAAIYAARANLKPMLVTGIAQGGQ
                     LMTTTDVDNWPADVDGVMGPDLMQRFLKHAERFDTKVVFDHINEVELGKRPFVLRGDS
                     AHYTCDALIIATGASAKYLGLPSEQAFMGRGVSGCATCDGFFYRGQEVCVVGGGNTAV
                     EEALYLSNIASKVHVVHRRDKFRAEAILVDKMMAKVADGKMQLHLWSTLDEVLGDERG
                     VSGVRIRSTKDDATAEIAVTGCFIAIGHSPNTDIFKGQLEMRDGYILSKAGLDGMATM
                     TSVPGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRFLEQA"
     gene            3281..3514
                     /gene="rpmB"
                     /locus_tag="VF308_08805"
     CDS             3281..3514
                     /gene="rpmB"
                     /locus_tag="VF308_08805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004631999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEX7436794.1"
                     /translation="MARVCQVTGKRPMVGNNVSHANNKTKRRFLPNLQYRRFWVEGEN
                     RWVRLRITNAALRLIDKVGIEQVVADLRARGEI"
     gene            3527..3694
                     /gene="rpmG"
                     /locus_tag="VF308_08810"
     CDS             3527..3694
                     /gene="rpmG"
                     /locus_tag="VF308_08810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011903571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEX7436795.1"
                     /translation="MAKGGREKIKLESSAGTGHFYTTDKNKKTTPEKLELMKFDPKAR
                     KHVTYKETKLK"
     gene            complement(3784..5004)
                     /locus_tag="VF308_08815"
     CDS             complement(3784..5004)
                     /locus_tag="VF308_08815"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HEX7436796.1"
                     /translation="MDVLTSVFNALVQWLGHGFSGFSGWEIVAYTLITTHITIAAVTI
                     FLHRAQAHRALDLHGIPSHFFRFWLWLGSGMVTKEWVAIHRKHHAKCETEDDPHSPQT
                     RGIKTVLLMGSELYRTEAKNQETLAKYGRGTPDDWLERNLYSRFSWQGVGLMLIADLF
                     LFGAIGATVWAVQMLWIPITAAGIVNGIGHFWGYRNFEAPDASRNVLPWGIVIGGEEL
                     HNNHHTYPTSAKLSVKRYEFDIGWMYIRGLEMLGLAKVRKTAPQLKLGAIKPVADGKT
                     LEAIIANRYEVMANYARSLRSASRAEIARLKGEGETAGRIAQLRIARRWLHRDDDKIP
                     QAARAHVAGALASSPYLAKLVAMREELRLLWTRTNVSAEQLVADLQAWLRKAEESGIA
                     ALQDFALRLRAAHA"
     gene            complement(5126..6394)
                     /locus_tag="VF308_08820"
     CDS             complement(5126..6394)
                     /locus_tag="VF308_08820"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HEX7436797.1"
                     /translation="MHPTALLEAQTELVHRALRFEHPADRVVADFFREQRALGTRDRH
                     LLADGVFALLRKLPLWRHLASSANGGRGEVERRLALLVWQGNAGVLNAAIDERERDWL
                     ARCRAFDLAALPDRLRHNLPDWLAVPLQERLGDEFWAWVDAVDAPAPLDLRVNALKAD
                     RDEVLERLRSAGFDAAATPYSPLGIRVAGKPALQKTDVFEEGLVEVQDEGSQLLALVA
                     GAKRGEMVVDFCAGAGGKTLALGAQMRNTGRLYAFDISGHRLAALKPRLQRSGLANVH
                     PAQIAHERDDRVKRLAGKIDRVLVDAPCSGSGTLRRNPDLKWRQSAESVSALVPTQGA
                     ILAAASRLVKPGGRLVYATCSVLDAEGESVAREFDALGAGQFERLPAQEALERSRVTD
                     AGSLVSGQDLRLWTHRHGTDGFFAAIWQRH"
BASE COUNT         1086 a         2224 c         2261 g          993 t
ORIGIN      
        1 caggcaggcc gacaatgtcc ttgccgaggc cgatcgtcag ctgcgagccg ggatcggcgt
       61 acgcctgcga gccgagaacc tccgagaggc ggatcatctg ccgcttggcg ttgggcagct
      121 cgagcgccat cgtcgtcttg ccgggaatcg tctcgacgac acggatcgag accaggccga
      181 gcgagcgcgc caggtccttg gccaggctca cgacctgggc gcccttgacg ccgagcgccg
      241 gctcgatctc gtagcgcgtg atcaccggcc ccggcgacgc ggcgacgacg cggacctcga
      301 cgccgaagtc cttgaggcgc ttctcgatca ggcgcgacgt catctcgagc gattcggcgc
      361 tgacgccctc gacacgctgc ggcgccgagt cgagcagatc gacctgtggc agcttggtgt
      421 cgacgagctc gctgaagagg ggcttctggc gctccttgac gacgcgagtg ctcttcggca
      481 cgtcgaccaa ggtcggctcg atgacgatcg gcaggtgctg ctcgtgcagc tcctgctcga
      541 cctcgaagac ctcgccgcgc tcgcggatcg cctcggcgcc gaggcgggcg tcctcggcgc
      601 gctcgatgcg ctcgacccgg cgcgttcgca gcgattcgac gctcaagccg atcgaatcgg
      661 cgacgcgcag ccaggaaaag cgcaacgcca gcgaggcacc ggcgacgagc acggcgatcc
      721 agagcacgcc cgatccggcg aagccgagca ggttctggct ggctcgaccg aggacgagac
      781 cgagcacgcc gccggcgttg ccgcccgcga cctggccttc ccattggtac aggcgcgtcc
      841 attcgagcga agcgctggcg gcgagcagca gggccaggcc gagccccatc gtccacgccg
      901 gcagagcatg ggcgggcgct tcaggcgcgg cgccgctgtg cgcgcgcagc gttcgcgcca
      961 gcgcgccgag ccaggcgcgc gcgccgacca ggatcgtcca ccagaccgag tagccggcga
     1021 cgaagaaggc gacgtcggag agccaggcgc cgaggacgcc ggcacggttg ttgatcgggc
     1081 cgccggcgcc cgaggtcgaa aagcccggat cggcggcgct gtgcgtggcg agggcgagca
     1141 gcgcgagcag ccagacgacg gcgccgacca ggagagcgac ctgctcgcgc cagtgcggcg
     1201 cgaaggcggc ggaggggtcg cgcgacggca ccggatcggc gccgtcgccg cgaagtgaac
     1261 ccagcggaaa agtcatcccc gaattgtcgg tgctcgcggc acctcagaaa agcgggcccg
     1321 acgggcccgg tccctcccgc ccggcgggag gggagcgcag cagggagggt gcaatcctgt
     1381 gcgagagcag ttgacgggct tcagcccgtc aactgctcct tgatcaccac ccagccgttc
     1441 tcctgcgtct gcaccatgcc gcggccttcg aggtccttca tgacccggct caccatctcg
     1501 cgcgacgcgc cgacgacctt ggccaggtcc tggcgcgaga ccttgttgcg gatgaccttg
     1561 atctcgccgt ccatctcgga catgtcgagc agggtgcggg cgacccggcc gtagacgtcg
     1621 agcagggcga gcgactcgat ctggcggtcg gcgctgcgca ggcgctggac caggccgcgc
     1681 atgatcgcgt acgacaggct cgagttctcg ggcaggcagc gcgcgaactc ggcgcggccg
     1741 aggatcagca tgtcggtctg gacctcggcc cggaccgtcg ccgagtgcgg ctcgttgtcg
     1801 atcaggctca tctcgccgac gtagtcgccc gactggagca ccgcgaggat cacctcgcgg
     1861 ccgcgcgcat cggcggtgag cacgcgcgcc cgccccgtga gcaggatgaa gagggcgttg
     1921 gacttcttgt tgtgctcgac gacgatctcg ccgcgcctga agcgcctctt gacgacgctg
     1981 tcggcgatgc cttgcgcctg ctcgttcgtc agcaacgaaa agagcgggac gcgccggatg
     2041 aggtcgaggt tcgagagcat cgccatctga ggagcctttc tggttgcggg cgcggccgtg
     2101 gcaaacatca cgccacgcgc ggtcacgcta ttgtcaccat tacgagcgtt gatgccagca
     2161 ggatcgaacc ccatgtcaga cttgcggcgc cgctgccaca ccgaacccca ttcatcgtcg
     2221 ccatgccctt gccttcccat cacgccggtg tcctgatcct cggctccgga ccggccgggt
     2281 atacggcggc gatctacgcc gcacgcgcca acctgaagcc gatgctcgtc acgggcatcg
     2341 cccagggcgg ccagctgatg acgacgaccg acgtcgacaa ctggccggcc gacgtcgacg
     2401 gcgtcatggg tccggacctg atgcagcgct tcctcaagca cgccgagcgc ttcgacacca
     2461 aggtcgtgtt cgaccacatc aacgaggtcg agctcggcaa gcggccgttc gtcctgcgcg
     2521 gcgattccgc ccactacacc tgcgacgcct tgatcatcgc caccggcgcc tcggccaagt
     2581 acctcgggct gccctccgag caggcgttca tgggccgcgg cgtcagcggc tgcgccacct
     2641 gcgatggctt cttctaccgg ggccaggagg tctgcgtcgt cggcggcggc aacaccgcgg
     2701 tcgaggaggc gctctacctc tcgaacatcg cctcgaaggt gcacgtcgtc catcgccgcg
     2761 acaagttccg cgccgaggcg atcctggtcg acaagatgat ggccaaggtc gccgacggca
     2821 agatgcagct gcacctgtgg tcgacgctcg acgaggtgct cggcgacgag cgcggcgtga
     2881 gcggcgttcg cattcgcagc acgaaggacg acgcgaccgc cgagatcgcc gtcaccggct
     2941 gcttcatcgc catcggccat tcgccgaaca ccgacatctt caagggccag ctcgagatgc
     3001 gcgacggcta catcctgagc aaggccggcc tcgacggcat ggcgacgatg accagcgtgc
     3061 ccggcgtgtt cgccgccggc gacgtccagg accacgtcta ccggcaggcg atcacgagtg
     3121 ccggtaccgg ctgcatggcc gcgctcgacg cccagcgatt cctcgagcag gcctgagtcg
     3181 agcaagtcgg cgccgcgccg ctataatggc aggctttgcc gcgaccggcc ctatgggctg
     3241 cgctggcaac ccctcacaca gctagtcacg gagaagcgtc atggcacgcg tctgtcaggt
     3301 aacgggcaag cgcccaatgg tcgggaacaa cgtctcccac gccaacaaca agacgaagcg
     3361 ccgcttcctg cccaacctgc aataccgccg gttctgggtc gaaggcgaga accgctgggt
     3421 gcgcctgcgc atcaccaacg cggcattgcg gttgatcgac aaggtcggca tcgagcaggt
     3481 cgtcgccgac ctgcgcgcgc gcggcgaaat ctaaggagta gcgaccatgg caaaaggtgg
     3541 acgcgagaag atcaagctcg aatcgagcgc cggcaccggt catttctaca cgaccgacaa
     3601 gaacaagaag acgacgccgg aaaagctcga gctgatgaag ttcgatccga aagcacgcaa
     3661 gcacgtgacc tacaaggaaa ctaagctcaa gtaggaaagc ggggtcgctg cgcgacccct
     3721 tctggttcag ccaaatgcaa aagggtcgcc tcggcgaccc ttttctttgg agctgcgtcg
     3781 cgcttaagcg tgcgccgcgc gcagacgcag ggcgaagtcc tggagggcgg cgattccgct
     3841 ctcctcggcc ttgcgcagcc acgcctgcag atcggcgacg agctgctcgg ccgagacgtt
     3901 ggtgcgggtc cagagcaggc gcaactcttc gcgcatggcg accagcttgg cgaggtacgg
     3961 gctcgacgcc agcgcgccgg cgacgtgagc gcgggcggcc tgagggatct tgtcgtcgtc
     4021 gcggtgcagc cagcgacgcg cgatgcgcaa ctgggcgatg cggccggcgg tctcgccctc
     4081 gcccttcagg cgcgcgatct cggcgcggct ggcgcttcgg aggctgcgcg cgtagttggc
     4141 catcacctcg tagcggttgg cgatgatcgc ctcgagcgtc ttgccgtcgg cgaccggctt
     4201 gatcgcgccg agcttcagct gcggcgcggt cttgcggacc ttcgccaggc cgagcatctc
     4261 gaggccacgg atgtacatcc agccgatgtc gaactcgtag cgcttgaccg acagcttggc
     4321 cgaggtcgga taagtgtggt ggttgttgtg cagctcttcg ccgccgatga cgatgcccca
     4381 cggcaggacg ttgcggctcg cgtcgggcgc ctcgaagttg cgatagcccc agaagtggcc
     4441 gatgccgttg acgatgccgg ctgccgtgat cgggatccag agcatctgca ccgcccagac
     4501 ggtggcaccg atcgcgccga acaggaacag gtcggcgatc agcatcaggc cgacgccctg
     4561 ccagctgaaa cgcgaataga ggttgcgctc gagccagtcg tcgggcgtgc cgcggccgta
     4621 tttggcgagc gtctcctgat tcttggcttc cgtgcgatag agctcgctac ccatcagcag
     4681 gacggtcttg ataccgcgcg tctgcgggct gtgcggatcg tcttcggtct cgcacttggc
     4741 gtggtgcttg cggtggatcg cgacccactc cttggtcacc atgcccgagc cgagccagag
     4801 ccagaagcgg aagaaatgcg acggaatccc gtgcaggtcg agggcgcggt gcgcctgcgc
     4861 ccggtgcagg aagatcgtca ccgcggcgat cgtgatgtgc gtcgtgatca gcgtgtaggc
     4921 gacgatttcc caaccgctga agccggaaaa gccgtggccg agccactgca ccagcgcgtt
     4981 gaaaactgag gtcagcacat ccatccgggg cctttttcac tcgtatcaca ggaaccgtcg
     5041 attctattcg acgcgccctc gccgataacc ttcgcatttg acggatatca cgctgagtcg
     5101 aaatatgggg acgcgaccgc cgacctcaat ggcgttgcca gattgccgcg aagaagccgt
     5161 cggtaccgtg ccgatgcgtc cacaaacgca gatcctggcc gctgacgagc gatccggcgt
     5221 cggtcacccg ggaccgctcg agggcctcct gggcggggag gcgctcgaac tggccggcgc
     5281 ccagcgcgtc gaactcgcgc gccaccgact cgccctcggc gtcgaggacg ctgcaggtgg
     5341 cgtagacgag ccggccgccg ggcttcacca ggcgggacgc ggccgccagg atcgcaccct
     5401 gcgtgggcac cagggctgac accgattcgg cgctctggcg ccacttcagg tcgggattgc
     5461 ggcgcagcgt tcccgacccg ctgcacggcg catcgacgag gacgcgatcg atcttgccgg
     5521 ccagacgctt gacccggtcg tcgcgctcgt gcgcgatctg cgccggatgg acattggcca
     5581 ggccgctgcg ctgcaggcgc ggcttcagcg cggcgaggcg atggcccgag atgtcgaagg
     5641 cgtagagccg cccggtgttt cgcatctgcg cgccaagggc gagcgtcttg ccgccggcgc
     5701 cggcgcagaa atcgacgacc atctcgccgc gcttggcgcc ggcgacgagg gcgagcagct
     5761 ggcttccttc gtcctgcacc tcgaccagtc cctcttcgaa gacatcggtc ttctggagcg
     5821 cgggcttgcc ggcgacgcga atgccgagcg gcgaatacgg cgtcgccgcg gcgtcgaagc
     5881 cggccgagcg caggcgctcg agcacctcgt cgcgatcggc cttgagcgcg ttgacgcgga
     5941 ggtcgagcgg cgccggcgcg tcgaccgcgt caacccaggc ccagaactcg tcgccgaggc
     6001 gctcctgcag cggcacggcg agccagtcgg gcaggttgtg gcgcagacgg tcgggcagcg
     6061 cggcgagatc gaacgcccgg cagcgcgcga gccagtcgcg ctcgcgctcg tcgatggcgg
     6121 cattcaggac gccggcgttg ccctgccaga cgaggagcgc cagacgccgt tcgacctcgc
     6181 cgcggccacc gttggccgag ctcgccagat ggcgccagag cgggagcttc ctcaggagcg
     6241 cgaagacgcc gtcggcgaga aggtggcgat cgcgcgtgcc gagggcgcgc tgctcgcgga
     6301 agaaatcggc gacgacgcgg tcggcggggt gctcgaagcg gagcgcgcgg tgcacgagct
     6361 cggtctgcgc ctcgagcagt gcagtcggat gcatcgcccg gattatcctt ggcgccccgg
     6421 gaccgtcctg gcgcgcgtcg cgccctcttt atgcgagaga caccgtgagc cgccgaccct
     6481 cggtcgccct gagcgcgtcg gtcagccatc tcgtcgcgca tcgtcgtctc gtcctctgcg
     6541 cgatcgccgg cgcgatcgcc ggtg
//
LOCUS       DASVHM010000466         2497 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1260702, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000466 DASVHM010000000
VERSION     DASVHM010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1260702"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VF308_08825"
     CDS             <1..180
                     /locus_tag="VF308_08825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436798.1"
                     /translation="DLGSYRMPSLIPLTVYTAIVPAAGVLIALFSIEQLVNGWRHGFE
                     GPEDQDDLPAAEFAE"
     gene            177..1520
                     /locus_tag="VF308_08830"
     CDS             177..1520
                     /locus_tag="VF308_08830"
                     /inference="COORDINATES: protein motif:HMM:NF018513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HEX7436799.1"
                     /translation="MSPSAGAILCLMAFLFLLFGYMGVPVSFALIAGVLVATLFTPIS
                     MQSMVGQLFHGIDSEALLAVPFFLLVGELMASSDVVHRMIRLSQTLVGHMRGGLAQVV
                     TLFSMFFAGISGSSTADVAVLSRTVAPEMDKEGYDRAFTAALIASASTMANLIPPSIM
                     AVVYGATGNVSIGGLFLAGVVPGVLIGIGLMVYSYFWGPVGVLKKRAPLTEVLVAARG
                     SALPLVIPVIIMGGILSGWFTPTEAGMMAAMYILVVLIPVLNRGHIKELPRDFMYAGL
                     LYSLPLAAVAGASAFGWMVAYLRGPDIVAGYITGFAGTNGPMIMFLLVCVFIIVGDFI
                     DAVPAIIIFMPIINKLTQIGNIQPLHMGVVIITTLVFGLITPPYGLSLLVASKYVGVG
                     FGKAVVRSLPLYIVFLLTIAFVVLFPDVVLWLPKQLLPESVGCFKAPGGTGFICP"
     gene            1543..2427
                     /locus_tag="VF308_08835"
     CDS             1543..2427
                     /locus_tag="VF308_08835"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEX7436800.1"
                     /translation="MHAFVASQAPFGVRPLTPRLGAEISGLDLARGVAPDDFRALYDA
                     FLRYQVLVVAAHEVPPAAQVAFARQFGEVQVHVMSMYHADGFPELYRLSNLDAAGKPD
                     GKHPDKGTLYWHTDGSWRRVTGQATIIYGEIVPATGGETHFADMYGAYDRFSDAWKRR
                     IAGLRAVHNLDFSRTRRHGTDLMTEAQKREAPPVEHPIVRRHPETGRTCLYLGDHAES
                     VVGMPYDEGRNRIDELNALAVHADLTYEHHWRPHELIVWDNRCLMHRATDYDPQTQSR
                     VVRRCTVLGEEPVGVAAA"
BASE COUNT          343 a          905 c          789 g          460 t
ORIGIN      
        1 gacctgggca gctaccgcat gccttcgctg atccctctca ccgtgtacac ggccatcgtg
       61 cccgcggccg gcgtcctgat cgcgctgttc tcgatcgagc agctcgtcaa cggctggcgt
      121 cacggtttcg aagggcccga ggatcaggac gacctgccgg ctgcggagtt cgccgaatga
      181 gcccgagcgc cggcgcgatc ctgtgcctga tggccttcct gttcctgttg ttcggctaca
      241 tgggcgtgcc ggtgtcgttc gcgttgatcg cgggggtgct ggtcgcgacc ctgttcacgc
      301 cgatcagcat gcagtcgatg gtcgggcagc tctttcacgg catcgattcc gaggcgctgc
      361 tcgcggtgcc gttcttcctg ctggtcggcg agcttatggc gtcgtccgac gtcgtccacc
      421 gcatgattcg tctctcgcag accctggtcg ggcacatgcg cggcggcctg gcccaggtcg
      481 tgacgctgtt cagcatgttc ttcgccggca tctcgggctc gtcgacagcg gatgtcgcgg
      541 tcctcagccg caccgtcgcc cccgagatgg acaaggaagg ctacgaccgg gctttcactg
      601 ctgcgctgat cgcctcggcc tcgaccatgg ccaacctgat cccgcccagc atcatggcgg
      661 tcgtctacgg cgccaccggc aatgtctcga tcggcggtct cttcctcgcc ggcgtcgtgc
      721 cgggcgtgct gatcggcatc ggcctgatgg tttacagcta cttctggggc ccggtcggcg
      781 tcctcaagaa gcgcgcgccg ctgaccgagg tgctcgtcgc cgcgcgcggc tcggcgctgc
      841 cgctggtcat cccggtgatc atcatgggcg gcatcctgag cggctggttc acgccgaccg
      901 aggcggggat gatggcggcg atgtacatcc tggtcgtgct gatcccggtg ctcaaccgcg
      961 gccatatcaa ggagctgccg cgcgacttca tgtacgcggg cctgctctac tcgctgccgc
     1021 tcgcggcggt ggcgggcgcg tcggcgttcg gctggatggt cgcctacctg cgcggccccg
     1081 acatcgtcgc cggctacatc acgggcttcg ccggcaccaa cgggccgatg atcatgttcc
     1141 tgctcgtctg cgtgttcatc atcgtcggcg acttcatcga cgcggtgccg gcgatcatca
     1201 tcttcatgcc gatcatcaac aagctcaccc agatcggcaa cattcagccg ctgcacatgg
     1261 gcgtggtgat catcacgacg ctggtgttcg gcctgatcac gccgccgtac gggctgtcgc
     1321 tgctggtcgc gtcgaagtac gtcggcgtcg gcttcggcaa ggcggtcgtt cgctcgctgc
     1381 cgctctacat cgtcttcctg ctcaccatcg ccttcgtcgt cctgttcccg gacgtcgtcc
     1441 tctggctgcc gaagcagctg ttgcccgaat cggtcggctg cttcaaggcg ccgggcggca
     1501 cgggattcat ctgcccctga gaaactcggc cgaggttcga ccatgcatgc cttcgtcgct
     1561 tcccaggcgc ctttcggcgt ccgcccgctg accccgcgcc tcggcgccga gatctcgggc
     1621 ctcgacctcg cgcgcggcgt cgcgcccgac gactttcgcg cgctctacga cgccttcctg
     1681 cgctaccagg tcctcgtcgt cgccgcgcac gaggtgccgc cggcggcgca ggtcgccttc
     1741 gcacgccagt tcggcgaggt ccaggtccac gtcatgtcga tgtaccacgc cgatggcttt
     1801 cccgagctct accggctctc caacctcgac gccgcgggca agcccgacgg caagcatccg
     1861 gacaagggga cgctgtactg gcacaccgac ggctcctggc gccgcgtcac cgggcaggca
     1921 acgatcatct acggcgagat cgtcccggcg acgggcggtg agacgcactt cgccgacatg
     1981 tacggcgcct acgaccggtt cagcgacgcg tggaagcggc gcatcgcggg cctccgcgcc
     2041 gtccacaacc tcgacttctc gcgcacccgc cgccacggca ccgacctcat gaccgaggcg
     2101 cagaagcgcg aggcgccgcc ggtcgagcac ccgatcgttc gccgccaccc cgagaccggc
     2161 cgcacctgcc tctacctcgg cgaccacgcc gagagtgtcg tgggcatgcc gtatgacgaa
     2221 ggccgcaacc gcatcgacga gctcaacgcg ctcgccgtcc acgccgacct gacctacgag
     2281 caccactggc ggccgcacga gctgatcgtc tgggacaacc gctgcctgat gcaccgcgcg
     2341 accgattacg acccgcagac gcagtcgcgc gtcgttcgcc gttgcaccgt cctgggcgag
     2401 gagccggtcg gcgtcgccgc cgcctagcga tcgaccttct tcacgttcgc gcaacgtaac
     2461 agcgactctc gcgcggcgcg ccatccgcga caatcgg
//
LOCUS       DASVHM010000467         1749 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_538452, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000467 DASVHM010000000
VERSION     DASVHM010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_538452"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..998
                     /locus_tag="VF308_08840"
     CDS             <1..998
                     /locus_tag="VF308_08840"
                     /inference="COORDINATES: protein motif:HMM:NF025131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="stimulus-sensing domain-containing protein"
                     /protein_id="HEX7436801.1"
                     /translation="SLYGRGDVLRFELPPPSIEKPGLAERTMIAVRTWLNRGDLPLYR
                     ELGPENGNGYREVADALKGQKRSMVRVNDRGEVIVSVAVPVQRFRAIQGALMLSTQGD
                     DIDQMVTAERLAILKIGGVASAVMILLSLLLASTIAGPVRRLADSAERVRRRIRTRVE
                     IPDFTRRRDEIGHLSGALRDMTDALYNRIEAIEMFTADVAHELKNPLTSLRSAVETLP
                     LARNENSRSRLLAVIEHDVKRLDRLISDISDASRLDAELQRQDMTPVDLRRLLTALTT
                     VANETRLGNNIAVEVRFEGRGPNDTFSVPGHDSRLGQVISNLLSNAQSFSEAGGR"
     gene            964..>1749
                     /locus_tag="VF308_08845"
     CDS             964..>1749
                     /locus_tag="VF308_08845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436802.1"
                     /translation="MRSRFPKPAAGDAHAAARGRERAGIVEQIADHLAEPRVVAGHLV
                     ARQRTAFEGERHAHLVAAHLVGGLHQRVEQLGEIDRSGFLALQLGIETAGVGNIRNQP
                     IEPLHIVLDDVEQALAVGIGLGHRQRFHRRAQRGERVAQFMRDVGGEALDRLDAGVER
                     IGHVAQRARQMPDLVAPAGEIRNLDAGADAPSHPLGAVGQPAHRAGDGAGQQHREHHH
                     DGGGDQEHLDDGEPLGLHHVVDVGALRGQHQRAAHRAEALHRHR"
BASE COUNT          294 a          600 c          584 g          271 t
ORIGIN      
        1 gcagtctcta cggccgcggc gatgtgctgc gcttcgaact gccgccgccg tcgatcgaaa
       61 aaccgggcct cgcggagcga acgatgatcg cggtgcgcac ctggctcaac cgcggcgacc
      121 ttccgctcta tcgcgaactc gggccggaaa acggcaacgg atatcgcgaa gtcgcggacg
      181 cgctgaaggg ccagaagcgc agcatggtgc gcgtcaacga ccgcggcgaa gtgatcgtct
      241 cggtcgcggt gccggtgcag cgtttccgcg cgatccaggg cgcgctgatg ctctcgaccc
      301 agggcgacga catcgatcag atggtgaccg ccgagcggct cgcgatcctg aagatcggcg
      361 gcgtcgcatc cgctgtcatg atcctcttgt cgctgttgct ggcgagcacg atcgccggcc
      421 cggtgcgccg gctcgccgac agcgccgaac gcgtccgccg ccgtatccgc acccgcgtcg
      481 agattccgga tttcacccgc cgccgcgacg agatcgggca cctctccggc gcgctgcgcg
      541 acatgacgga cgcgctgtat aaccgcatcg aggcgatcga gatgttcacc gccgacgtcg
      601 cccatgaatt gaagaacccg ctcacctcgc tgcgctccgc ggtcgaaacc ctgcctttgg
      661 cgcgcaacga gaacagccgc tcgcggctgc tggcggtcat cgagcacgac gtcaagcggc
      721 tcgaccggct gatctcggac atatcggacg cgagccggct cgatgccgag ctgcagcgcc
      781 aggatatgac gccggtcgac ctgcgccgcc tgctgacggc gctaaccacg gtcgccaatg
      841 aaacccggct cggcaacaat atcgccgtcg aggtgcgctt cgagggaaga ggccccaacg
      901 acaccttctc ggtgccgggc catgattcaa ggctcggaca ggtgatctcc aatctgctct
      961 ccaatgcgca gtcgttttcc gaagccggcg gcaggtgatg cgcacgctgc tgcccgcggc
     1021 cgagaacgag cgggcattgt cgagcaaatt gctgaccacc tggccgagcc gcgagtcgtg
     1081 gccgggcacc tggtagctcg acagcggacc gccttcgaag gcgagcgtca cgctcacctc
     1141 gtcgcggcgc acctcgttgg cggccttcac cagcgcgtcg agcagcttgg cgagatcgac
     1201 cggagcggct tcctggcgct gcagctcggc atcgagacgg ctggcgtcgg aaatatccga
     1261 aatcagccga tcgagccgct tcacatcgtg ctcgatgatg tcgagcaggc gcttgcggtt
     1321 ggcatcggtc ttggccatcg gcagcgtttc caccgccgag cgcagcgagg tgagcgggtt
     1381 gcgcaattca tgcgcgacgt cggcggcgaa gctctcgatc gcctcgatgc gggtgtagag
     1441 cgcattggtc atgtcgcgca gcgcgcccga cagatgcccg atctcgtcgc gccggcgggt
     1501 gaaatccgga atctcgacgc gggtgcggat gcgccgtcgc acccgctcgg cgccgtcggc
     1561 cagccggcgc accgggccgg cgatggtgcc ggccagcagc atcgagagca ccaccatgac
     1621 ggcggcggcg accaggaaca ccttgacgat ggcgagccgc tcggcctcca ccatgtcgtc
     1681 gatgtcggcg ccttgcgtgg acagcatcag cgcgccgcgc accgcgcgga agcgctgcac
     1741 cggcaccgc
//
LOCUS       DASVHM010000468         3596 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_320708, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000468 DASVHM010000000
VERSION     DASVHM010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3596
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320708"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1697)
                     /locus_tag="VF308_08850"
     CDS             complement(<1..1697)
                     /locus_tag="VF308_08850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX7436803.1"
                     /translation="MLSTPLVIAASFAYLMLLFAIAYLGDSRAGAGRSIIGNAWVYAL
                     SMGVYCTAWTYFGSIGRAASAGLWFLPIYLGPTLGMLIAWMLLRKMIRIARVHRITSI
                     ADFIASRYGKSRLLAALVTLIAVVGIVPYVALQLKATATGYSLLTSGHVLPGGSVAGA
                     AWWRDSTLYMALVLAGFTIAFGTRHLDTTERHEGMVAAIAVESMVKLLAFLAIGAFVT
                     WGLFEGPGDIFTRASARPDLKPLLGLGAENRFAGGQWFALTLLSMLSLFFLPRQFQMM
                     VVENVDERHVRRAAWAFPLYLLLINLFVLPIALGGLLHPASAGADSETFVLSLPLATG
                     HPWLALLAFVGGLSAATGMIIVEAIAVSTMVCNDLVIPLLLRRGPGPARDLTGTLLGI
                     RRGVIVALLLLGYLYFRIAGEAYALVSIGLISFAAVAQFGPALLGGMYWKGGTRAGAL
                     AGLGAGFMLWVYTLMLPSIAKSGWMPDGFMTEGLFGIALLRPEQLFGLTGGDGLTHSL
                     LWSLLANAGLYVGVSLWRAPSARETSQAVLFVDVFERHAGAGASGPVFWRGRAQVGDL
                     "
     gene            complement(1702..1905)
                     /locus_tag="VF308_08855"
     CDS             complement(1702..1905)
                     /locus_tag="VF308_08855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436804.1"
                     /translation="MNQRLRSQRLLALFAGGWLLLNFPLLTLWDRGVLVAGLPLLPLA
                     LFAGWAALIGATAWICEADDTPD"
     gene            complement(1916..3343)
                     /locus_tag="VF308_08860"
     CDS             complement(1916..3343)
                     /locus_tag="VF308_08860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative nucleotidyltransferase substrate
                     binding domain-containing protein"
                     /protein_id="HEX7436805.1"
                     /translation="MTTTAPDVQREMLLLVTARVRDAYLRRPVYVDAALDLASVCREM
                     ARLNVTGVLVRDGERLGLFTTTDLRDAVVRGTSLERVPVRDAARFELITVRPDCELFE
                     ALWLMERHRVHRLVVCEGAQVLGVLAQLDLVSFVASHSHIVALQIDEAANVADLGRAA
                     ARIDSMIELLHDGGIKIERIARLVNDLNARLFARLWSLLAPPELVANSCLVVMGSEGR
                     GEQILKTDQDNALLLRDGFEPAGLDAVAAKFNGALSELGYPPCPGDIMLTNPLWRQPL
                     AAFRETIRDWLFAADPQGPMRLAIFFDAAAVAGDRSLLDAARDHLDNIFADNDAFLAR
                     FASAVDQFSAGGGWWSWLTTRRDDTQLDLKKIGTFPIVHGVRVLALQHRLRELGTAAR
                     LRVLVERGAIDGELARDLVDALHCLMGMKLTHQLRQRAAGETPGNLVRPADLGSLERD
                     ALNQALAIVKRFRALLAQRFRLDAL"
     gene            complement(3415..>3596)
                     /gene="actP"
                     /locus_tag="VF308_08865"
     CDS             complement(3415..>3596)
                     /gene="actP"
                     /locus_tag="VF308_08865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009667773.1"
                     /note="member of the sodium:solute symporter family;
                     cotranscribed with the acs gene which encodes acetyl
                     coenzyme A synthase; mutations affect acetate uptake;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cation acetate symporter"
                     /protein_id="HEX7436806.1"
                     /translation="SAWFPYNSGAIFSIPAAFLTIWLVSILDRSPRAQQDRAGYPAQE
                     VRSETGIGAERGGGH"
BASE COUNT          624 a         1233 c         1293 g          446 t
ORIGIN      
        1 aggtcgccga cctgcgcgcg gccgcgccag aagaccggtc cggaggcgcc ggcgcccgcg
       61 tgccgctcga agacgtcgac gaacagcacc gcctgactgg tctcgcgtgc cgacggcgcg
      121 cgccatagcg acacgccgac atagagcccg gcgttcgcca gcagactcca cagcagcgaa
      181 tgcgtcaggc cgtcgccgcc ggtaaggccg aacagttgtt cgggccgcag cagcgcgatt
      241 ccgaacagcc cttcggtcat gaaaccgtcc ggcatccagc ccgacttcgc gatcgacggc
      301 agcatcagcg tgtagaccca gagcatgaag ccggcgccga ggccggcgag cgcgccggcg
      361 cgcgtgccgc ccttccagta catgccgccg agcagcgccg gtccgaactg cgcgaccgcg
      421 gcaaagctga tcaggccgat gctgacgagc gcgtaggcct cgccggcgat ccggaagtac
      481 aggtagccga gcagcagcag cgcgacgatc acgccgcggc ggatgccgag cagcgtgccg
      541 gtcaggtcgc gcgccggccc gggcccgcgg cgcagcagca acgggatcac gaggtcgttg
      601 cagaccatcg tcgagaccgc gatcgcctcg acgatgatca tcccggtcgc cgccgagagc
      661 ccgccgacga aggcgaggag cgcaagccac ggatgcccgg tggcgagcgg cagcgacagc
      721 acgaaggtct cggagtcggc gccagcactg gccgggtgca gcaacccacc gagcgcgatc
      781 ggcagcacga acaggttgat gagcagcagg tagagcggga acgcccaggc cgcgcgccga
      841 acgtggcgct cgtcgacgtt ctcgacgacc atcatctgga actggcgcgg caggaagaag
      901 agcgacagca tcgacagcag ggtcagcgcg aaccactggc cgccggcgaa gcggttctcg
      961 gcgccgaggc cgagcagcgg cttcaggtcg gggcgcgccg aggcacgcgt gaagatgtcg
     1021 cccgggcctt cgaacaggcc ccaggtgacg aatgcgccga tcgcgaggaa cgcgagcagc
     1081 ttgaccatcg actcgaccgc gatcgccgcg accatcccct cgtgacgctc ggtggtgtcg
     1141 agatggcggg tgccgaaggc gatcgtgaaa ccggcgagca ccagcgccat gtaaagcgtg
     1201 ctgtcgcgcc accaggcggc gccggcgacg ctgccgccgg gcagcacatg tccgctcgtc
     1261 agcagcgaat agccggtggc ggtcgccttc agctgcaacg cgacgtacgg gacgatgccg
     1321 acgacggcga tcagcgtgac cagcgcagcc agcagccggc tcttgccgta gcggctggcg
     1381 atgaagtcgg cgatcgacgt gatgcgatgg acgcgagcga tacggatcat cttgcgcagc
     1441 agcatccacg cgatcagcat cccgagcgtc ggaccgaggt agatcggcag gaaccacaag
     1501 ccggccgatg cggcccggcc gatgctgccg aagtaggtcc aggcggtgca atagaccccc
     1561 atcgacaggg catagaccca ggcgttgccg atgatcgagc gccctgcgcc ggcgcggctg
     1621 tcgcccaggt aggcgatcgc gaacagcagc atcaggtacg cgaacgacgc ggcgatgacc
     1681 agcggtgtcg acagcatggc gtcagtccgg cgtgtcgtcg gcctcgcaga tccacgcagt
     1741 cgcgccgatc agcgcggccc agccggcgaa cagcgccagc ggtaacagcg gcaagccggc
     1801 gacgagaacg ccgcggtccc acagcgtcag cagcgggaag ttcagcagca gccagccgcc
     1861 cgcgaacagc gcgagcaggc gttgcgagcg caggcgctgg ttcaccggcg gctcctcata
     1921 gcgcgtcgag ccggaagcgc tgcgcgagca gcgcgcggaa gcgcttgacg atcgccagcg
     1981 cctggttcag cgcatcgcgc tcgaggctgc cgaggtcggc cggccgcacc aggttgcccg
     2041 gcgtttcgcc ggccgcgcgc tggcgcagct ggtgggtgag cttcattccc atcaggcagt
     2101 gcagcgcatc gacgaggtcg cgcgcgagct cgccgtcgat cgcgccgcgc tcgaccagca
     2161 cgcgcagccg cgccgccgtg ccgagctcgc gcagccggtg ctgcagcgcc agcacgcgca
     2221 cgccgtgaac gatcgggaag gtgccgatct tcttcaggtc gagctgggtg tcgtcgcgcc
     2281 gggtcgtcag ccacgaccac cagccgccgc cggcgctgaa ctggtcgacc gcgctcgcga
     2341 agcgggcaag gaaggcgtcg ttgtcggcga agatgttgtc gaggtggtcg cgcgccgcat
     2401 cgagcagact ccggtcgccg gccacggccg cggcgtcgaa gaagatcgcg aggcgcatcg
     2461 ggccctgcgg gtcggcggcg aacagccagt cgcggatcgt ctcgcgaaac gccgcaagcg
     2521 gctggcgcca caacgggttg gtcagcatga tgtcgccggg gcacggcggg tagccgagct
     2581 cgctgagcgc gccgttgaac ttcgcggcca ccgcgtcgag gccggccggc tcgaagccgt
     2641 cgcgcagcag gagcgcgttg tcctggtcgg tcttcaggat ctgctcgccg cggccttcgc
     2701 tgcccatcac gacgaggcag ctgttggcga cgagctcggg cggcgcgagc agcgaccaca
     2761 gccgcgcgaa caggcgcgcg ttcaagtcgt tgacgaggcg cgcgatgcgt tcgatcttga
     2821 tgccgccgtc gtgcagcagc tcgatcatcg agtcgatgcg cgcggccgcg cgcccgaggt
     2881 cggcgacgtt cgcggcctcg tcgatctgca gcgcgacgat gtgcgaatga ctggcgacga
     2941 agctgacgag gtcgagctgg gcgagcacgc ccagcacctg cgcgccttcg cacaccacta
     3001 ggcggtgaac ccgatgccgc tccatcagcc acagggcctc gaacagctcg cagtccggcc
     3061 gcaccgtgat gagctcgaag cgggctgcgt cgcgcaccgg cacgcgctcg agcgacgtgc
     3121 cgcgaacgac cgcatcgcgc aggtcggtgg tggtgaacag gccgagcctc tcgccgtcgc
     3181 gcaccagcac gccggtcacg ttcaggcgtg ccatctcgcg gcacacgctc gcgaggtcga
     3241 gcgcggcgtc gacgtagacg gggcggcgca ggtaggcatc gcgcacccgc gccgtcacga
     3301 gtaacagcat ctcgcgttga acgtcggggg cggtggtcgt catgtccggt gagaaacgga
     3361 agcgggactg cggcgatcgt gcctgcagtc ccgcgtgggg tccagagttc cggactagtg
     3421 cccgccgcca cgctccgcgc cgatgcccgt ctcggaacgc acctcttgcg ccgggtagcc
     3481 cgcgcgatcc tgctgtgccc gcgggctgcg gtcgaggatc gaaaccagcc agatggtcag
     3541 gaacgccgcg gggatcgaga agatcgcccc cgagttgtac gggaaccagg ccgagc
//
LOCUS       DASVHM010000469         1882 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_683482, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000469 DASVHM010000000
VERSION     DASVHM010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_683482"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1171)
                     /gene="aspS"
                     /locus_tag="VF308_08870"
     CDS             complement(<1..1171)
                     /gene="aspS"
                     /locus_tag="VF308_08870"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEX7436807.1"
                     /translation="MRTTYCGLVSETLVGQTVTLMGWAHRRRDHGGVIFIDLRDREGL
                     VQIVCDPDRAETFGRAEGVRNEYCLKVVGKVRARPAGTGNANLTSGGIEVLCTELEVL
                     NPSVSPPFQLDDENLSETTRLTHRVLDLRRPFMQRNLKLRYRVAMEVRKFLDANGFID
                     IETPMLTKSTPEGARDYLVPSRVHEGMFFALPQSPQLFKQLLMIAGFDRYYQITKCFR
                     DEDLRADRQPEFTQIDIETSFLEEEEIRTMFEGMIRSTFQHAIGVELPAFPVMTYTDA
                     MRRYGSDKPDLRVKLELTELTDVMADVDFKVFATPATQKDGRVVALRIPGGGEMSRGE
                     IDAYTEFVKIYGAKGLAWIKVNDVAKGREGLQSPVVKNLHDKALAEILARTAAASG"
     gene            complement(1297..>1882)
                     /locus_tag="VF308_08875"
     CDS             complement(1297..>1882)
                     /locus_tag="VF308_08875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020203148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF502 domain-containing protein"
                     /protein_id="HEX7436808.1"
                     /translation="QAVLPMGAHAPIEWLRSIPGLGVIVMLLGLLLTGVFATNIFGQW
                     WLRQGHRLLNKIPIVKSIYSSVKQVSDTLFSSSGNAFRQAVLVQYPRRGSWTIAFVTG
                     KPGGEAAHHLRGDYLSVYVPTTPNPTSGFFLMVPHAEVITLAMSVDEALKYVISMGVV
                     APPTTLVRSTEPIREALAEPARDTSAVAARNPTG"
BASE COUNT          302 a          600 c          647 g          333 t
ORIGIN      
        1 ccccgctggc ggccgcggtg cgcgcgagga tctcggcgag tgccttgtcg tgcaggttct
       61 tgacgaccgg cgactgcagg ccttcgcgac ccttggcgac atcgttgacc ttgatccagg
      121 ccagaccctt ggcaccgtag atcttcacga attcggtgta ggcatcgatc tcgccccggc
      181 tcatctcgcc gccgccggga atgcgcagcg cgacgacgcg gccgtccttc tgggtcgcgg
      241 gtgtcgcgaa caccttgaag tcgacatcgg ccatcacgtc ggtcaactcg gtgagttcga
      301 gcttgacgcg caggtcgggc ttgtcggagc cgtagcggcg catcgcatcg gtgtacgtca
      361 tcaccgggaa cgccggcagc tcgacgccga tcgcgtgctg gaaagtgctg cggatcatgc
      421 cctcgaacat cgtgcggatc tcttcctcct cgaggaacga ggtctcgata tcgatctgcg
      481 tgaactcggg ctggcggtcg gcgcgcaggt cttcgtcgcg gaagcacttg gtgatctggt
      541 agtagcggtc gaagcccgcg atcatcagca gctgcttgaa gagctggggg ctttgcggca
      601 gcgcgaaaaa catgccctcg tgaacgcggc tcggcacgag gtagtcgcgt gcgccttcgg
      661 gtgtgctctt ggtgagcatc ggcgtctcga tgtcgatgaa gccgttggca tcgagaaact
      721 tgcgcacctc catcgccacc cggtagcgca gcttcaggtt gcgctgcatg aaggggcggc
      781 gcagatcgag cacgcggtgc gtgaggcggg tggtctcgga gaggttctcg tcgtcgagct
      841 ggaacggcgg cgagacgctc gggttgagca cttcgagttc ggtgcacaac acctcgatcc
      901 cgccgctggt gaggttggcg ttcccggtgc cggcggggcg ggcgcgcacc ttgccgacca
      961 ccttcaggca gtactcgttg cgcacgcctt cggcgcgccc gaaggtctcg gcgcgatcgg
     1021 ggtcgcagac gatctgcacc aggccttcgc ggtcgcgcag gtcgatgaag atcacgccgc
     1081 catggtcgcg ccggcgatgg gcccagccca tcagcgtgac ggtctggccc accagcgttt
     1141 cgctgacgag gccgcaatag gttgttcgca tcacatctcc agatcgttcg gggcagcgac
     1201 ggatcgctgg tttcggcgcc tccggaaccc gcatgggcga aggacttcgc gacacgtcag
     1261 gctggcgcgc cggacggttc gcacgtccgc cgccgctcag ccggtcggat ttcgcgccgc
     1321 gacggcgctg gtgtcgcgcg ccggctcggc gagagcctcg cgaatcggct cggtgctgcg
     1381 caccagggtc gtcggcggcg ccaccactcc catcgagatg acgtacttca aggcttcgtc
     1441 gacgctcatc gcgagggtga tcacctcggc atgcggcacc atgaggaaaa agcccgaggt
     1501 cgggttcggc gtcgtcggca cgtagacgct gaggtagtcg ccgcgcaggt ggtgcgccgc
     1561 ctcgccgccg ggcttgccgg tcacgaaagc gatggtccac gagccgcggc gcgggtattg
     1621 caccagcacg gcctggcgga aggcgttgcc gctgctcgaa aaaagcgtgt ccgagacctg
     1681 cttgaccgag ctgtagatcg acttgacgat cggaatcttg ttgaggaggc gatgcccctg
     1741 gcgcagccac cactgcccga agatgttggt cgcaaagacg cccgtcagca agagaccgag
     1801 cagcatcacg atgacaccga gcccgggaat cgagcgcagc cattcgatcg gcgcgtgcgc
     1861 ccccatcggc agcaccgcct gt
//
LOCUS       DASVHM010000470         4425 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1404148, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000470 DASVHM010000000
VERSION     DASVHM010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4425
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1404148"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(236..1516)
                     /locus_tag="VF308_08880"
     CDS             complement(236..1516)
                     /locus_tag="VF308_08880"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008158377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX7436809.1"
                     /translation="MHMAQEGQAEADQGRRVLPLAGITVIDLSRVVAGPYCTMMLADL
                     GATVIKVEHPNDPDYVRDFPPHVGAAARPGAALESGAAPGGSAYFAQYNRHKLGVSLD
                     LKHPDGKALLLEMIAKADVFVENFRPGTMDKLGLGWPTLQVANPRLIYTAISGFGQTG
                     PHSPRPSFDSTAQAAGGLWSMNGEAGRPPVRVGSIIGDLAASFYATIGTLAALREVER
                     SGVGQRVDISQQDSVVTLTESAIVNFTVNGAVATPLGSAHPFARPYGQFPCKDGFVFF
                     GSYSDKLWRETCAIFGEPELAEDPEIDTMVKRFDEATYKRRIEPIIDRWFLPRTKAEL
                     EAMAGNRIALTPIKKIDEVVGDPHLRAREMFVPVGVGGIEVEVFGSPMKLSATPALVA
                     GDAPLLGQHNREVYVDWLGMAPTRFAQLHADGVI"
     gene            complement(1522..2178)
                     /locus_tag="VF308_08885"
     CDS             complement(1522..2178)
                     /locus_tag="VF308_08885"
                     /inference="COORDINATES: protein motif:HMM:NF013488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxychromene-2-carboxylate isomerase"
                     /protein_id="HEX7436810.1"
                     /translation="MAAELQPPRVSNPGAPGAAPIDFYFDFISSYGYVASLRIEAIAA
                     RHGRSVNWHCMLLGVAVMKVMGLKPLLETPLKGDYVRRDLPRYARRHGLALAREVSDP
                     MMDPRPAARAFCWVKRHHPGHEGAFAHEVFDRYWRLGRDLSSSDELAATAGALGFDGA
                     ALRQGIDSEEARTDLRAAVAASLERGVFGSPFVFVDDEPFWGSDRLEQVEDWLARGGW
                     "
     gene            complement(2196..3695)
                     /locus_tag="VF308_08890"
     CDS             complement(2196..3695)
                     /locus_tag="VF308_08890"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011811016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HEX7436811.1"
                     /translation="MNTTPILELRKATKKYAGVPAIEDVDFALRTGEIHAIVGENGAG
                     KSTLTKVMAGVVNLTSGQMLVDGKEVNPRTPNEALHLGVAMVFQETSLVPTMTVAQNL
                     FLGQEKFFNRLRGIYIAAQQFLQSLQFDVDPTAVVSLLGAAKKQMVEIARAVLHNAKV
                     IIFDEPTASLTPEEKKYFFDLVYNLKARGVSVIFISHALEEALLVSDRITILRDGKHV
                     VTDDKVNFDRARIVQAMVGRDLSQTLYGQRKTSVRPQGKRVLSVQNLRMAAMVKNNSL
                     SVFAGQITGVFGLVGSGRTETFKVVAGVIKRDFMHGGEVLLHDRPVRYFVPASAVRDG
                     IVYVTEDRKIEGFFETQSIAGNVYLGLLAKLRGKRKLVSRKEAAEVGAHWIKRLNIRA
                     IGEEVKAIELSGGNQQKLVIAKSLVQEPEIIIFDEPTRGVDVGAITEIHQLINRLADE
                     GKAVVVISSYLPEIMALSDRILVQRMGKVVEEYSALEATEEKIMYAAIH"
     gene            complement(3692..>4425)
                     /locus_tag="VF308_08895"
     CDS             complement(3692..>4425)
                     /locus_tag="VF308_08895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="strictosidine synthase"
                     /protein_id="HEX7436812.1"
                     /translation="LNALNAISATDDGRLVATDGSKTQPVEHWKHDLMELGRSGRLLE
                     FDLAAGTSREIASNLAYAFGARTTRDEVWVSESWRHRVLRFGGKRSGQTVLDGLPGYP
                     SRIAPASGGGCWLTCFTLRTQLVEFVLREPAFRKRMLAEIEPQYWIAPALNSGNTFLE
                     PMQGAHLKTMGIVKPWAPPRSYGLVIRLTEQGLVRYSLHSRFDGKHHGIVAAVECGGH
                     LYMLSKGRNRVLRLSIAAAETSLGT"
BASE COUNT          707 a         1481 c         1465 g          772 t
ORIGIN      
        1 aagatcaggc gatcacgccg tcaaagaaag acggcctaga cgcagtgtcg tccaggccgt
       61 cgatccgaag ctgaaaagag gtggtgcggc tggcaggatt cgaacccacg acccgttggt
      121 cgtagctcgt tgcctgatag caagttgttg atcccattct tggcatttgc tgggaacggc
      181 gcttgctgca cttctgctag agccgcgccg ttgccatgct ccaagtcaat tctgctcaga
      241 tgaccccgtc tgcgtgcaac tgcgcgaagc gggtaggcgc catgccgagc cagtcgacat
      301 agacctcccg attgtgctga cctagcaacg gtgcatcgcc ggccacgagc gcaggcgttg
      361 ccgaaagctt catcggcgag ccgaacacct cgacctcgat cccgccgaca ccgacgggta
      421 cgaacatctc acgcgcccgc aagtgcggat cgccaaccac ctcgtcgatc ttcttgatcg
      481 gtgtcagcgc gatccggttg cccgccatgg cctcgagctc cgccttggtt cgcggcagga
      541 accagcgatc gatgatcggc tcgatgcggc gcttgtacgt cgcttcgtcg aagcgcttca
      601 ccatggtgtc gatctccgga tcttcggcga gctcgggttc gccgaagatc gcgcaggttt
      661 cgcgccagag cttgtcgctg taggaaccga agaacacgaa gccgtccttg catggaaact
      721 ggccgtacgg ccgcgcgaac ggatgggcgc tgccgagcgg cgtggcgacc gcaccgttga
      781 ccgtgaagtt gacgatcgcg ctttcggtca gcgtgacgac cgagtcctgc tgcgagatgt
      841 cgactctctg gccgacgccg ctgcgttcga cctcgcggag cgccgcgagc gtgccgatgg
      901 tcgcgtagaa cgacgccgcg aggtcgccga tgatgctgcc gacccgcacc ggcgggcggc
      961 ccgcctcgcc gttcatagac cacagtccgc ctgcggcctg cgccgtgctg tcgaacgacg
     1021 gccgcggcga gtgcggcccg gtttggccga agccgctgat cgcggtgtag atcaggcgcg
     1081 ggttcgcgac ctgcagcgtc ggccagccga gccccagctt gtccatggtg ccgggccgga
     1141 agttctcgac gaagacgtcg gccttggcga tcatctcgag cagcagcgcc ttgccgtcgg
     1201 gatgcttcag gtccaggctc acgccgagct tgtggcggtt gtactgcgcg aaatacgcgc
     1261 ttccgccggg agccgcgccc gattccagcg cagcgccagg gcgcgccgcg gcgccgacgt
     1321 gcggcgggaa gtcgcgcacg tagtccggat cgttcgggtg ctcgaccttg atcacggtgg
     1381 ctccgaggtc ggccagcatc atcgtgcagt acggcccggc gacgacgcgg ctgaggtcga
     1441 tcacggtgat gccggcgagc ggcagcacgc gcctgccctg gtctgcttcg gcctgccctt
     1501 cctgcgccat gtgcatcgcc ctcaccagcc gccgcgcgcg agccagtcct cgacctgctc
     1561 gagccggtcg gagccccaga acggctcgtc gtccacgaac acgaagggcg agccgaagac
     1621 gccgcgctcg agcgatgccg caacggcagc gcggagatcg gtgcgcgcct cttcgctgtc
     1681 gatgccctgc cgcagggccg cgccatcgaa gccgagcgct ccggcggtgg cagcgagctc
     1741 gtccgatgac gacaggtcgc gaccgagccg ccagtagcgg tcgaatacct cgtgcgcgaa
     1801 ggcgccttcg tgccccgggt gatgtcgttt gacccagcag aaggcgcgtg ccgcggggcg
     1861 cgggtccatc atcgggtcgc tgacctcgcg cgccagcgcg aggccgtgac ggcgcgcgta
     1921 gcgagggagg tcgcgccgga cgtaatcgcc cttcagcggc gtttcgagca gcggcttcag
     1981 gcccatcacc ttcatcacgg cgacaccgag cagcatgcag tgccagttga cgctgcggcc
     2041 gtggcgcgcg gcgatcgcct cgatgcgcag gctcgcgacg taaccgtaac tggagatgaa
     2101 atcgaagtag aagtcgatcg gtgcggcgcc cggtgcgcct gggttcgaga ctcgcggcgg
     2161 ttgcagttcg gcggccatcg tcttcgcccc gcggctcagt ggatcgccgc gtacatgatc
     2221 ttctcttcgg tggcctcgag cgcggagtac tcctcaacca ccttgcccat ccgctggacc
     2281 aggatccggt ccgagagcgc catgatctcg ggcaggtacg acgagatcac gaccaccgcc
     2341 ttgccctcgt ccgccagccg attgatcagc tgatggatct cggtgatcgc gccgacgtcg
     2401 acgccgcgcg tcggctcgtc gaagatgatg atctcgggct cctgaacgag cgacttggcg
     2461 atcacgagct tttgctggtt gccaccggaa agctcgatcg ccttgacctc ctcgccgatg
     2521 gcgcggatgt ttaggcgctt gatccagtgc gcaccgacct cggcagcctc cttcctggac
     2581 accagcttgc gcttgccgcg cagcttggcg aggagaccca ggtagacgtt gccggcgatc
     2641 gactgggtct cgaagaagcc ttcgatcttg cggtcctcgg tgacgtagac gatgccgtcg
     2701 cgcaccgccg aagccggcac gaagtagcgc accgggcggt cgtgcagcag gacctcgccg
     2761 ccgtgcatga agtcgcgctt gatgacgccg gcgacgactt tgaaggtctc ggtccgcccc
     2821 gagccgacca gcccgaacac ccccgtgatc tggcccgcga acaccgacag cgagttgttc
     2881 ttcaccatcg ccgccatgcg caggttctgc accgagagga cgcgcttgcc ctgcggccgc
     2941 acgctggtct tgcgctggcc gtagagcgtc tgcgacaggt cgcggccgac catcgcctgg
     3001 acgatccggg cgcggtcgaa attcaccttg tcgtcggtca cgacgtgctt gccgtcgcgc
     3061 aggatcgtga tccggtcaga gacgaggagc gcctcctcga gcgcgtgcga gatgaagatc
     3121 accgagacgc cgcgcgcctt caggttgtag accaggtcga agaagtactt cttctcctcg
     3181 ggcgtcaggc tcgcggtcgg ctcgtcgaag atgatgacct tggcgttgtg cagcacggcg
     3241 cgcgcgatct cgaccatctg cttcttggcc gcgccgagga ggctcacgac cgccgtcggg
     3301 tcgacgtcga actggagcga ctgcaggaac tgctgcgccg cgatgtagat gccgcgcagg
     3361 cgattgaaga acttctcctg gccgaggaag aggttctgcg cgaccgtcat cgtcggcacc
     3421 aggctcgtct cctggaacac catcgccacg cccaggtgca aggcctcgtt cggcgtgcgc
     3481 gggttgactt ccttgccgtc gaccagcatc tggcccgacg tcaggttcac gaccccggcc
     3541 atcaccttcg tcagcgtcga cttgccggcg ccgttctcgc cgacgatggc gtggatctct
     3601 cccgtgcgca gcgcgaagtc gacgtcttcg atggccggga cgccggcgta cttcttggtc
     3661 gccttgcgca actcgagtat cggcgtcgtg ttcatgtccc gaggctcgtt tcggcagcgg
     3721 cgatcgacag ccggagcacg cgattgcggc ccttcgagag catgtacagg tggccgccgc
     3781 attcgaccgc ggcgacgatg ccatggtgct tgccgtcgaa gcgactgtgc agcgaatagc
     3841 gcaccaggcc ttgctcggtc agcctgatca cgagcccgta ggagcgcggc ggcgcccacg
     3901 gcttcacgat gcccatcgtc ttcaggtgcg cgccctgcat cggttcgaga aacgtgttgc
     3961 ccgagttcaa tgccggtgcg atccagtact gcggttcgat ctcggccagc atgcgcttgc
     4021 gaaacgccgg ctcgcgcagc acgaactcga ccagttgcgt gcgcagggta aaacaggtga
     4081 gccagcaacc gccgcccgag gcgggcgcga tgcgcgacgg atagcccggc aggccgtcga
     4141 gcaccgtctg gccggaacgc ttgccgccga acctcagcac gcggtgacgc cagctctcgc
     4201 tgacccagac ttcgtcccga gtcgtgcgcg ctccgaaggc ataggcgagg ttggacgcga
     4261 tctcgcgcga cgtgccggcg gccagatcga attcgagcag gcgcccgctg cgaccgagtt
     4321 ccatcaggtc gtgcttccag tgctcgacgg gctgcgtctt cgagccgtcg gtggccacca
     4381 gtcggccgtc gtccgtggcg ctgatcgcgt tcagcgcgtt gagcg
//
LOCUS       DASVHM010000471         2500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_683687, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000471 DASVHM010000000
VERSION     DASVHM010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_683687"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..284)
                     /locus_tag="VF308_08900"
     CDS             complement(<1..284)
                     /locus_tag="VF308_08900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007862092.1"
                     /note="involved in the transport of lipid A across the
                     inner membrane; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HEX7436813.1"
                     /translation="MTRPTSTFKARLQRIAPYFAGTRRGFALVIIGAIVGAATEPAIP
                     ALLKPLLDSGFKAGTLQLWLVPVAIIGIFVVRGLAGFVAQYGLSWSANRA"
     gene            364..1197
                     /locus_tag="VF308_08905"
     CDS             364..1197
                     /locus_tag="VF308_08905"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX7436814.1"
                     /translation="MLPPAPPSEIQDPPRVSVYIIAFNEAEKIRDAIASVLWADEIVV
                     ADSHSTDGTQQIAESFGARVVQIEFHGFGELRNRAIEACRGDWIFSLDSDERCTPQVR
                     DEVLAIVAAPDALDVYRVPRRNYFMGRWIRHSGWYPNFRQPQLFRRGTMAYTLEPVHE
                     GYRLLSDKPLGVLTHAIWQFPFANLGEVVAKLNRYSTLGAAKVAPGRASMVRALTSAT
                     WAFVKHLVFKRGILDGWAGFVIAFAYFEQTFYRYAKRYEQDAAWALPAHAPIRRVVKS
                     D"
     gene            1230..2498
                     /gene="tolB"
                     /locus_tag="VF308_08910"
     CDS             1230..2498
                     /gene="tolB"
                     /locus_tag="VF308_08910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system beta propeller repeat protein
                     TolB"
                     /protein_id="HEX7436815.1"
                     /translation="MLKRRSLLACAAGAFAASARAQFKVEISGVGATQLPIAVLKFRD
                     EDRAGQAISAIVRADLERSGVFRLIDASGALDETSQPVMTEWRGRSADALAAGSVARL
                     ADGRFDVRFKLWDVVKGSELGSQSNAVLAADLRLAAHRIADTIYEKLTGDKGVFSTRI
                     AYVTKGGGRYTLRVADADGEGGQVALNSAEPIISPAWSPNGRELAYVSFESQKAVVYT
                     QDVATGSRRAVANFRGSNSAPAWSPDGQTLAVTLSRESGSQLFLIGRNGENPRRLTTS
                     QAIDTEPVFAPDGRSIYFVSDRGGGPQIYRIGVGGGAVERVTFGGSYNISPTLSPDGR
                     TLAFISRSGNAFRLHTQELAPGAQPTAISDSSEDEHPSFAPNGRLIVYATRAQGREVL
                     MTTTLDGKIKARLASAAADVREPVWGPYGR"
BASE COUNT          400 a          876 c          844 g          380 t
ORIGIN      
        1 atggcgcggt tggccgacca cgagaggccg tactgggcca cgaacccggc gaggccgcgc
       61 acgacgaaga tgccgatgat ggccacgggc accagccaga gctgtagcgt gccggccttg
      121 aagccgctgt cgagcagggg cttcaacaag gccggaatgg cgggttcggt ggccgcgccg
      181 acgatggcgc cgatgatcac cagcgcgaag cccctgcgtg tgcccgcgaa gtagggcgcg
      241 atgcgctgca ggcgcgcctt gaacgtcgag gtcggtcggg tcatctcggc ccggattatc
      301 cgccgggcgc tctgcctaca atgcgaccgg cccgccgcgc acccgcgcca ccgcccccgg
      361 cagatgctcc cacccgcgcc cccctccgag atccaggacc cgccccgggt gtcggtctac
      421 atcatcgcct tcaacgaggc cgaaaagatc cgggacgcga tcgcgagcgt gctctgggcc
      481 gacgagatcg tcgttgccga ttcgcacagc accgatggca cgcagcagat cgccgaatcg
      541 ttcggcgcgc gcgtggtcca gatcgagttc cacggcttcg gcgagctgcg caaccgcgcc
      601 atcgaagcct gtcgcggcga ctggatcttc agcctcgatt cggacgagcg ctgcacaccg
      661 caagtgcgtg acgaggtgct cgcgatcgtc gccgcgcccg acgcgctcga cgtctatcgg
      721 gtgccgcggc gcaactactt catgggccgc tggatccgcc attcgggctg gtacccgaac
      781 tttcgccagc cgcagctctt ccggcgtggc acgatggcct acacgctcga gccggtccac
      841 gagggctatc gactgctcag cgacaagccg ctcggcgtgc tgacccacgc gatctggcag
      901 tttccgttcg cgaacctcgg cgaagtcgtg gccaagctca accgctactc gacgctcggc
      961 gccgccaagg tcgcgccggg ccgggcctcg atggtccggg cgctgacgag cgcgacctgg
     1021 gccttcgtca aacacctggt cttcaagcgc ggcattctcg acggctgggc cggcttcgtg
     1081 atcgctttcg cctacttcga gcagaccttc taccgctatg ccaagcgcta cgagcaggat
     1141 gcggcctggg ccttgcccgc gcacgcgccg atccggcgcg tcgtgaaatc agattgaacc
     1201 gacccgtgcg aatcgggtct gccaccttca tgttgaaaag aagaagcctt cttgcctgcg
     1261 ctgcgggcgc attcgcagcc tcggcacggg cccagttcaa ggtcgagatc tccggggtcg
     1321 gcgccaccca gttgccgatc gcggtgctga agtttcgcga cgaggatcgc gccggccagg
     1381 cgatctcggc gatcgtgcgc gccgacctcg agcgcagcgg cgtgttccgc ctgatcgatg
     1441 cgagcggcgc cctcgacgag acgagccagc cggtcatgac cgaatggcgc ggccgcagcg
     1501 ccgatgcgct cgccgccggt tcggtcgcgc gtctcgccga tgggcgcttc gacgtccgct
     1561 tcaagctttg ggacgtggtc aagggcagcg aactcggcag ccagagcaac gccgtgctgg
     1621 cggccgacct gcgcctggct gcgcaccgca tcgccgacac catttacgag aagctgaccg
     1681 gagacaaggg cgtcttctcg acccgcatcg cctacgtcac gaagggcggt ggccgctaca
     1741 cgctgcgcgt cgccgacgcc gacggcgagg gcgggcaggt cgcgctgaac agcgccgagc
     1801 cgatcatctc gccggcctgg tcgccgaacg gtcgcgagct cgcctacgtc tcgttcgaga
     1861 gccagaaggc ggtcgtctac acgcaggacg tcgccacggg cagccggcgc gcggtcgcga
     1921 actttcgcgg ctccaacagc gcgccggcct ggtcgccgga cgggcagacg ctcgcggtca
     1981 cgctctcgcg cgagtccggc tcgcagcttt tcctgatcgg ccgcaacggc gagaatccgc
     2041 gccggctgac gacgagccag gcgatcgaca ccgagccggt gttcgcgccc gatggacgca
     2101 gcatctattt cgtcagcgac cggggcggcg gcccgcagat ctatcgcatc ggcgtgggcg
     2161 gcggcgcggt cgagcgcgtg acgttcggcg gcagctacaa catcagcccg acgctgagcc
     2221 cggacggccg cacgctggcc ttcatctcgc gatccggcaa cgcgtttcgc ctccacacgc
     2281 aggagctcgc gcccggagcc cagccgacgg cgatcagcga cagcagcgag gacgagcacc
     2341 cgagcttcgc gccgaatggc cggctcatcg tttatgcgac tcgtgcgcag ggtcgggagg
     2401 ttttgatgac gaccacgctc gatggcaaga taaaggcccg tctcgcatcg gcggcggccg
     2461 atgtgcgtga gcccgtctgg ggcccgtacg ggcgatagaa
//
LOCUS       DASVHM010000472         2144 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_33265, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000472 DASVHM010000000
VERSION     DASVHM010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33265"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..527)
                     /locus_tag="VF308_08915"
     CDS             complement(<1..527)
                     /locus_tag="VF308_08915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HEX7436816.1"
                     /translation="MNIEQARFNMIEQQIRTWEVLDPGVLELLAMVRREDFVPAAYRA
                     MAFVDTEVPLPAGQCMLAPKVEARLLQELAVQRHERVLEVGAGSGHMAALLAHKAQHV
                     TSLEIVPELARLAADNLHRAWIMNVEVLEADASRTVAQDGPFDVIVLSGSVAEVPRTL
                     LAQLKPGGRLTAIVG"
     gene            complement(572..>2144)
                     /locus_tag="VF308_08920"
     CDS             complement(572..>2144)
                     /locus_tag="VF308_08920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7436817.1"
                     /translation="WSLGHRLATLAIATASFVGSFFIIPILGAEFVPKADFSETQINF
                     YTPVGSSLEVTETRAKQIDAVLREMPEVKYTVTTINSGQAAGKIYGATYIRLVDRNDR
                     QRGVNELTVPLRERLARIPGVTITNIGQTDLGGGKSLQFSIQGTDLGELERLSKAITT
                     RLAAIPGLVDLDSTLKPDKPTVAVEVRRDAASDAGLNVNMLAGALRTLVAGTLVGNWR
                     APDGENYDVNVRLTPQSRNSIEDLQRMPINVAPAADGSARVVRLSQVADVMPATGPNQ
                     INRRDLNREINIDANAFGRSSGDVSTDIRKVLDAVNWPPGYRYSFGGSTKNMNESFSY
                     AVGALGLAVVFIYMILASQFRSFLQPLALMSSLPLTLIGVVLALLFFRSTLNMFSIIG
                     IVMLMGLVTKNAILLIDFAIRAQRGEHGEAPLPREAALLHAARVRLRPILMTTLAMIF
                     GMVPLAFALSEGSEQRAPMGQAVIGGVITSSLLTLVVVPVVYCYLDDLARWARRKWAG
                     TGRPAPTVTAPQAPK"
BASE COUNT          330 a          693 c          773 g          348 t
ORIGIN      
        1 tggccgacga tcgcggtcag gcgcccgccc ggcttgagtt gggcgagcag cgtgcgcggc
       61 acctcggcga cggagccgga cagcacgatc acgtcgaagg gcccgtcctg cgccaccgtg
      121 cgcgacgcgt ccgcctccaa cacctcgacg ttcatgatcc aggcgcggtg caggttgtcg
      181 gcggcgagcc gggcgagctc gggaacgatc tcgaggctcg tcacgtgctg cgccttgtgg
      241 gcgagcaggg ccgccatgtg gcccgagccg gcgccgacct cgagcacgcg ctcgtggcgc
      301 tgcacggcga gttcctggag taggcgcgcc tcgaccttgg gcgcgagcat gcactggccg
      361 gccggcagcg gcacctcggt gtcgacgaag gccatcgccc ggtaggccgc gggcacgaag
      421 tcctcgcgcc ggaccatggc gaggagctcc agcacgcccg gatccagcac ctcccaggtg
      481 cggatctgct gctcgatcat gttgaagcgg gcttgttcga tgttcatggt ctgtgcacct
      541 cggccgacga atcctctagt cttcctctag tctatttggg tgcctggggc gcggtgacgg
      601 tcggggcggg gcggcccgtg ccggcccatt tgcggcgggc ccagcgcgcc aggtcgtcga
      661 gatagcagta gacgaccggc acgaccacca gcgtcagcag cgacgaggtg atgacgccgc
      721 cgatcaccgc ctggcccatc ggcgcgcgct gctccgagcc ttcggaaagc gcgaaggcga
      781 gcggcaccat gccgaagatc atcgccagcg tcgtcatcag gatcgggcgc aagcgcacgc
      841 gggccgcgtg cagcagcgcc gcctcgcgcg gcagcggcgc ctcgccgtgc tcgccgcgtt
      901 gcgcgcggat cgcgaaatcg atcagcagga tcgcgttctt ggtcaccagc cccatcagca
      961 tgacgatgcc gatgatcgag aacatgttga gcgtggagcg gaagaagagc agggcgagga
     1021 cgacgccgat cagcgtcaac ggcagcgaac tcatcagcgc gagcggttgc aggaagctgc
     1081 gaaactggct cgccaggatc atgtagatga agaccaccgc gagaccgagc gcgccgaccg
     1141 cgtagctgaa cgattcgttc atgttcttgg tcgagccgcc gaagctgtag cggtagccgg
     1201 gcggccagtt caccgcgtcg aggaccttgc ggatgtcggt cgagacgtcg cccgagctgc
     1261 gcccgaaggc gttcgcatcg atgttgatct cacgattgag gtcgcgccgg ttgatctggt
     1321 tcggcccggt cgcgggcatc acgtcggcca cctgggagag gcgcaccacg cgggccgagc
     1381 cgtcggcggc cggcgcgacg ttgatcggca tgcgctgcag gtcttcgatc gaattgcggc
     1441 tctgcggcgt gagccgcacg ttgacgtcgt agttctcgcc gtcgggggcg cgccagttgc
     1501 cgaccagcgt accggcgacg agcgtgcgca gcgcgccggc gagcatgttg acgttgaggc
     1561 cggcatcgga cgccgcgtcg cgccgcacct cgaccgcgac ggtcggcttg tccggcttga
     1621 gcgtgctgtc gaggtcgacc aggcccggga tcgcggcgag gcgggtcgtg atcgccttcg
     1681 acaggcgttc gagctcgccg agatcggtgc cctggatcga gaactgcagg ctcttgccgc
     1741 cgcccagatc ggtctggccg atgttggtga tcgtgacgcc gggaatccgc gcgaggcgct
     1801 cgcgcagcgg cacggtcagc tcgttgacgc cgcgctgccg gtcgttgcgg tcgacgagcc
     1861 ggatgtaggt cgcgccgtag atcttgccgg cggcctggcc gctgttgatc gtggtcaccg
     1921 tgtacttcac ttccggcatc tcgcgcagca ccgcgtcgat ctgtttcgcg cgcgtctcgg
     1981 tcacttcgag cgacgagccg accggcgtgt agaagttgat ctgggtctcg gaaaaatcgg
     2041 ctttcggcac gaattcggcg ccgaggatcg ggatgatgaa gaagctgccg acgaagctcg
     2101 ccgttgctat ggcgagggtg gccagccgat gcccgagcga ccag
//
LOCUS       DASVHM010000473         8200 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_756363, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000473 DASVHM010000000
VERSION     DASVHM010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 8200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8200
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_756363"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..559
                     /locus_tag="VF308_08925"
     CDS             <1..559
                     /locus_tag="VF308_08925"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX7436818.1"
                     /translation="PAIDPPQRQGRNTVKCWRFRFGNQGDGMASGIRFGLNGRHVGLD
                     VDHDRTLLSILRTDLELTGAKYGCGQGLCGACTVLVDGKATRACSTPLHAVAGKEVVT
                     IEGLASGERLHPLQQAFIDHGAFQCGYCTPGMLLSAHALLRETPKPSRAAIVAHLERN
                     LCRCGAHQRIVAAIEAVSRALGQAS"
     gene            619..2697
                     /locus_tag="VF308_08930"
     CDS             619..2697
                     /locus_tag="VF308_08930"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX7436819.1"
                     /translation="MLVALGPLTLRAQDAPRLYPEDFNAYLVIGENGRVTVFSGKIEM
                     GQGVMTSQAQMVAEELGVELAAIDMVLGDTERCPWDMGTFGSLTTRMFGPALRAAAAQ
                     ARLVLIALAAERLGVPAERLEVRNGLVFVTGEPGRAIGYGTLSKGARIAKVVDEKAVL
                     QAASGFRVMGTSPRRLDARAKVTGAAKYAADLRVPGMLCARVLRPPAHGATLMRLDSF
                     AVERMPGVTLARQGDLVAVLHADPDRAETALGRLNAQWRVPESKLDQDNIFDHIVAQS
                     TLQKELVNRGDLTAARARSERVFEAIFKKGYVAHAAIEPHAALAEVKDGRATVWASTQ
                     TPFPTRDRIAKVLGLDARSVRVITPFLGGGFGGKSADAQAVEAALLAQITGKPVQVAW
                     SRAEEFFNDTFDPAAVVKIVSGIDRDGRISLWDYSVYAAGERGATTFYDIADARIRSA
                     GRTAYGSDAEGQGVHPFAVGPWRAPGANMNVFATESQVDTMASAAGMDPFEFRMKNLK
                     DARMRRALAAAARAFGWMAAAAPSGRGFGIACSVDAGTHVATMAEVKVDPATGRVNVL
                     RIVCAQDMGIVVNPEGAKMQIEGGITMGLGYALAEELRFRGGEILDRNFDSYEIPRFS
                     GVARVEAVLVQNDDLAPQGGGEPSITTVGAVIANAVFDATGARVLRLPLTPERVRSAI
                     DHRVPTAASG"
     gene            complement(2733..3947)
                     /locus_tag="VF308_08935"
     CDS             complement(2733..3947)
                     /locus_tag="VF308_08935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436820.1"
                     /translation="MLLNTLFLALRSIRRNLLRSFLTILGIVIGVSAVITMVTLGHGA
                     TQAVQMQISSLGTNLLMVRPGQRQGPGGGGGGVGIPSFKEADADAIEAQIGGVAAVAP
                     EGRASVTVVGNGRNWATSVTGSSNAWFATGNWKLASGRTFTDDEQRAGAAVCIVGETV
                     RREIYGGTRGLGEQLRIKQFSCEVIGVLASKGQAAMGNDQDDTVVVPLHTLQRRVTGN
                     QKVNTLLVSMEDGSDSTRLKASLRQLLRERRKLAEGDDDNFNVLDTQQLAETLSGTTK
                     VMTTLLGAVAAVSLLVGGIGIMNIMLVSVTERTREIGLRLAIGALEREVLLQFLIEAV
                     TLAALGGLVGIVIATAASFVFAGVMGVPYLFDPTINLLSFVFSAAIGVLFGYFPARRA
                     ARLDPIEALRHE"
     gene            complement(3947..4705)
                     /locus_tag="VF308_08940"
     CDS             complement(3947..4705)
                     /locus_tag="VF308_08940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019572445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436821.1"
                     /translation="MSTAAGLPLIRLRGVTKVYGSGQARLTALAGVDLDVVAGEFVAI
                     MGPSGSGKSTAMNILGCLDTPSSGQYLFQGAHVETLSRDQRARLRRRYLGFVFQGFNL
                     LARTSAQENVELPLLYRGETAAKRHAAAARALQSVGLGGWEDHTPAELSGGQQQRVAI
                     ARAIVTEPAVVLADEPTGNLDTQRSREIMVLLRGLNLDHGITVLMVTHEPDMAAYARR
                     LVRFVDGRIDSDAANPHPVVPGEPTVPAATAGAT"
     gene            complement(4702..6042)
                     /locus_tag="VF308_08945"
     CDS             complement(4702..6042)
                     /locus_tag="VF308_08945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011802915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX7436822.1"
                     /translation="MNSRTAAESVAPTPGVESKNELAVLLDEPAALPWYRRPALWGGV
                     AGLAIAAGALWWWQQRQAADAAPSYTTQAAVRGNLTLTVTANGTLQPTRSISIGSELS
                     GTVTKVNVDVNDKIRKGQVLVELDTAKLRDQILRSRASLAESIAKVAQTVATEKEAAA
                     NLARLEEVARISGGKVPSKAELDTGRATLDRAIADEASARASVDDARAALSTDETNLS
                     KASITAPADGVVLTRNVDPGNAVAASLQAVTLFTVAEDLKQLRLWVYVDEADVGSVAV
                     GQEAAFTVSAYPSRNFPARVTRVGYGSTITDNVVTYLTYLDVDNGDLSLRPGMTATAT
                     ITATQRKNVLLVPNSALRFAPIDAAAAARPAASGGIVASLTPRMPSRSGTRSPAAAGA
                     STAAARQVWVLRDGKAVPLPVTPGISDGRMTEIIGGELQAGMLVITDQKAMAAK"
     gene            complement(6039..7448)
                     /locus_tag="VF308_08950"
     CDS             complement(6039..7448)
                     /locus_tag="VF308_08950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011802914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HEX7436823.1"
                     /translation="MLALAVQGCESLGSHHGAVEAADVPAGWSIAEGVAANGPSPLVQ
                     WWTRFGDVELTALVDQALRANTSVAGAQAALRQAVALRDVSAAGLLPVIAGSASAQHS
                     TGRNGAGNNLQAGLDANWEVDVFGANRSALRAAEATARASAATLGDVRVSIAAEVALE
                     YIALRSAQARLEIARANLVSQQETLQLTQWRLQAGLVTSLEAEQARAATEQTSAQVPA
                     LQTGIEQSSHALAVLTGRPPAALSSELAPLGAVPQAADDLALRIPAETLRQRPDVRAA
                     EDQVAAAVARADQADAARWPTFQLGGSVGLSAMTLGSLASRASVISALFASVSVPVFD
                     GGAARAQVRAQEAALDQAQATYRSAILTALKDVEDALVALRGDRERLAHLEQAAEAAS
                     NAALLARQRYGSGLVDFQIVLETQRTQLSTQDGVASARADVSADHVRLYKALGGGWVP
                     DPGDSTPAAADSAARAPRS"
BASE COUNT         1249 a         2799 c         2819 g         1333 t
ORIGIN      
        1 cccagcaatt gatccgccgc aaagacaggg acggaacacg gtgaaatgct ggcgctttcg
       61 attcggcaat cagggtgacg gcatggcgag cgggatccga ttcggtctga acggccggca
      121 cgtcggactc gacgtcgatc acgaccgcac gctcctttcg atcctacgca cggacctcga
      181 gctaaccggc gcgaagtacg gctgcggcca gggcctgtgc ggagcatgca ccgtgctcgt
      241 cgacggcaag gccacgcgag cctgctcgac cccgcttcac gcggtcgcag gcaaggaagt
      301 cgtcacgatc gaagggcttg cgtccggtga gcgattgcat cccttgcagc aggccttcat
      361 cgatcacggt gcgttccagt gcggctactg cacgccaggg atgctgctct cggcacatgc
      421 actgttgcgc gaaactccga aaccctcgcg agcggcgatc gtggcgcacc tggaacgcaa
      481 cctgtgtcgt tgcggcgccc accagcgcat cgttgccgcc atcgaagccg tttcacgggc
      541 gttggggcaa gcatcgtgag cgcatcgtcg gggctgaccc gtcgcagctt cttcaggctc
      601 gccggcggcg gcgtggtcat gctggttgca ctgggtccac tgacgcttcg cgcgcaggat
      661 gcgccgcgcc tctacccgga ggatttcaac gcctacctcg tgatcggcga gaacggccgg
      721 gtcaccgtct tctcgggaaa gatcgaaatg ggccagggag tcatgacttc gcaggcccag
      781 atggtggccg aagagctggg cgtcgagctc gcggcgatcg acatggtgct gggcgacacc
      841 gagaggtgcc cgtgggacat ggggaccttc ggttccctga cgacccgcat gttcggcccg
      901 gcgttgcgcg cggccgcggc ccaggcccgg ctcgtgctca tcgcgctggc cgctgaacgc
      961 ctcggtgttc cggcggaaag actcgaggtt agaaacgggc tcgtcttcgt gaccggcgaa
     1021 ccgggccgcg cgatcggcta cggcacgctt tcgaaaggcg cccggatcgc gaaggtcgtg
     1081 gacgagaagg cggtgctgca agccgcgtcc ggattccgcg tgatgggcac gtcaccccgg
     1141 cggctcgacg cgcgcgcaaa ggtcacggga gcggcaaagt acgcggccga cctccgggtt
     1201 cccggcatgc tctgcgcgcg agtcctgcgc ccgccggcgc acggcgcgac gttgatgcgg
     1261 ctggacagct tcgctgttga gcggatgccc ggtgtgacgc tcgccaggca gggcgatctc
     1321 gtggccgtgc tgcacgccga tcccgaccgc gccgaaacgg cgctcgggcg gctgaacgcg
     1381 cagtggcgcg tgcccgagtc gaagctggat caagacaaca tcttcgacca catcgtcgcg
     1441 cagtcgaccc tgcaaaagga gcttgtcaat cgcggcgacc tgacggccgc gcgagcgcgc
     1501 tccgaacggg tgttcgaggc gatcttcaag aagggttacg tcgcccacgc ggccatcgag
     1561 ccacatgcgg cgctggccga ggtcaaggac ggacgggcta cggtctgggc gtcgacgcag
     1621 acaccgttcc cgacgcgcga ccggattgcc aaggtcctcg gcctcgacgc ccgcagcgtt
     1681 cgggtgatca cgccattcct cggcggaggc ttcggcggca agagcgcgga cgcccaggcc
     1741 gtcgaggcgg cgctgctggc gcagatcacg ggcaagcccg tgcaggtggc ctggtcgcgt
     1801 gcggaagagt tcttcaacga caccttcgac cccgccgcgg tggtgaagat cgtttcggga
     1861 atcgatcggg acggcaggat ctcgctgtgg gactactccg tctacgccgc cggtgaacga
     1921 ggggccacca cgttttacga catcgcggat gcacgcattc gctccgccgg ccgaaccgcc
     1981 tacggatccg acgcggaggg acaaggcgtt cacccgttcg ctgtcggccc gtggcgggcg
     2041 ccgggcgcga acatgaatgt cttcgcgacc gaatcgcagg tcgacaccat ggcctcggcg
     2101 gcaggcatgg accccttcga attccggatg aagaacctga aggacgcgag aatgcgccgc
     2161 gcgcttgcgg cagcggcccg tgcgttcggc tggatggcgg cggctgcgcc gagcggacgc
     2221 ggcttcggga tcgcgtgcag cgtcgacgcc ggaacccatg tcgcaacgat ggccgaggtg
     2281 aaggtcgatc cggcaaccgg tcgggtcaac gtgttgcgca tcgtctgcgc gcaggacatg
     2341 ggcatcgtcg tcaaccccga gggcgcgaag atgcagatcg aaggcggcat cacgatgggc
     2401 ctcgggtatg cgctggccga ggagttgcgg ttccgcggcg gcgagatcct cgaccgcaat
     2461 ttcgacagct acgagatccc gcgcttcagc ggggttgcgc gcgtcgaagc cgtgctcgtc
     2521 cagaacgacg atctggcgcc gcaaggaggc ggagagccgt cgatcacgac tgtcggagcg
     2581 gtaatcgcca atgcggtctt cgatgcgacc ggggcaaggg tgctgcgctt gccgctgacg
     2641 ccggagcgcg tgcgctcggc cattgatcac cgcgtcccga cggcggcgtc cggctgaacg
     2701 cgccgctcac gcgtcgtctg gccgctcgtg cgctactcgt gtcgaagcgc ctcgatcggg
     2761 tccaggcggg ccgcgcgccg tgccgggaag tagccgaaca gcacgccgat agcggccgag
     2821 aacacgaagg acaacaggtt gatggtcggg tcgaacaggt agggcactcc catcacgccg
     2881 gcaaacacga acgacgcggc ggtggcgatc acgatgccga ccaggccgcc cagcgccgcc
     2941 agggtgaccg cctcgatcag gaactgcagc agcacctcgc gctcgagcgc gccgatggcc
     3001 aggcgcaggc cgatctcgcg ggtccgctcg gtgacgctga cgagcatgat gttcatgatg
     3061 ccgatgcccc cgaccagcag gctcaccgcg gccacggcac cgagcagcgt cgtcatcacc
     3121 ttcgtcgtgc cggacagtgt ctcggcgagt tgctgcgtgt cgagcacgtt gaaattgtcg
     3181 tcgtcgccct cggccagctt gcggcgctcg cgcagcaact ggcgcaggct ggccttcagg
     3241 cgcgtgctgt cgctgccgtc ctccatcgac accagcagcg tgttgacctt ctggttgccg
     3301 gtcacgcggc gctgcagcgt gtgcagcggc acgacgaccg tatcgtcctg gtcgttgccc
     3361 atcgcggcct ggcccttgga ggccagcacg ccgatcacct cgcaggagaa ctgcttgatg
     3421 cgcaattgct cgccgagacc gcgcgttccg ccgtagatct cgcgccgcac cgtctcgccg
     3481 acgatgcaga cagcggcgcc ggcgcgttgt tcgtcgtcgg tgaacgtgcg gcccgaggcc
     3541 agcttccagt tgccggtcgc gaaccaggcg ttgctgctgc cggtcacgct ggtcgcccag
     3601 ttgcggccgt tgccaactac cgtgacgctg gcgcgccctt cgggtgccac cgcggctacg
     3661 cctccgatct gcgcctcgat cgcgtcggca tcggcctcct tgaacgacgg tattcccacg
     3721 ccgccgccac caccgcccgg cccttggcgc tgtcccggcc gcaccatcag caggttggtg
     3781 ccgaggctcg aaatctgcat ctgcaccgcc tgcgtggcgc catggccgag cgtgaccatc
     3841 gtgatcaccg cactgacgcc gatcacgatg cccaggatcg tcaggaacga gcgcagcagg
     3901 ttgcggcgga tcgagcgcag cgcgaggaac agcgtgttca gcagcatcac gtcgcccctg
     3961 ccgtcgccgc cgggaccgtc ggctcaccgg gaacgacggg gtggggattc gccgcgtcgc
     4021 tgtcgatgcg gccatcgacg aagcggacca gccgcctggc ataggccgcc atgtcgggct
     4081 cgtgcgtgac catcagcacg gtgatgccgt gatcgagatt caggccgcgg agcagcacca
     4141 tgatttcccg actgcgctgg gtgtcgagat tgccggtggg ctcgtcggcc agcacgaccg
     4201 ccggctcggt gacgatggcg cgggcgatcg ccacccgttg ctgctgcccg ccggacaact
     4261 cggccggcgt gtggtcctcc cacccgccca agcccaccga ctgcagcgcc cgggccgcgg
     4321 ccgcatgccg cttggctgcg gtctcgccac ggtacagcag cggcaactcg acgttttcct
     4381 gcgccgaggt gcgcgccagc aggttgaagc cctggaacac gaagcccagg tagcgacgcc
     4441 gcagccgcgc tcgctggtct cgggacaagg tctcgacatg cgcgccctgg aacaggtact
     4501 ggccgctgct cggcgtatcg aggcagccca ggatgttcat tgcggtcgat ttgcccgagc
     4561 cgctcgggcc catgatggcg acgaactcgc cggcgacgac gtcgaggtcg actccggcga
     4621 gcgccgtcaa tctggcctgg ccgctgccat agaccttggt cactccgcgc aagcggatca
     4681 ggggcagacc ggcagctgtg ctcatttggc ggccatggcc ttctggtcgg tgatcaccag
     4741 catgccagcc tgcaactcgc cgccgatgat ctcggtcatc cggccgtcgc tgatgccggg
     4801 cgtcaccggc agcggcacgg ccttgccatc gcgcagcacc cacacctgcc gcgcggccgc
     4861 ggtgctggcg ccggctgcgg ccggactgcg cgtgccgctc ctggatggca tgcgcggcgt
     4921 caggctggca acaatgccgc cgctggccgc cggcctggcg gcggcggcag cgtcgatcgg
     4981 cgcgaagcgc agcgcgctgt tgggcacgag cagcacgttc ttgcgctgcg tcgcggtgat
     5041 cgtcgcggtg gccgtcatcc cgggccgcaa gctgaggtcg ccgttgtcga cgtcgaggta
     5101 ggtcaggtag gtgacgacgt tgtcggtgat cgtcgagccg tagccgacgc gggtcacgcg
     5161 tgccgggaag ttccggctcg ggtaggcgct gacggtgaac gccgcctcct gcccgactgc
     5221 gaccgacccg acgtcggcct cgtcgacgta cacccacagg cgcaattgct tgaggtcctc
     5281 ggcgaccgtg aacagcgtca ctgcctgcag cgatgccgcc acggcgttgc ccggatcgac
     5341 gttgcgagtc aggacgacgc cgtcggcggg cgcagtgatc gacgccttcg acaggttcgt
     5401 ctcgtcggtc gacagcgccg cccgggcatc gtcgacgctg gcacgggcgc tggcttcgtc
     5461 ggcgatcgcc cggtcgagcg tcgcgcggcc ggtgtcgagc tcggcctttg acggcacctt
     5521 gccaccggag atgcgagcca cttcctcgag gcgcgccagg ttggctgccg cttccttctc
     5581 cgtggcgacg gtctgggcga ccttggcgat cgattccgcc agcgacgcac gcgagcgcag
     5641 gatctggtcg cgcagcttgg cggtgtcgag ctcgacgagg acctgaccct tcctgatctt
     5701 gtcgttgacg tcgacgttga ccttcgtcac ggtgcccgag agctcgctgc cgatgctgat
     5761 cgagcgcgtc ggctgcagcg tgccgttggc ggtgacggtc agcgtcagat tgccgcgcac
     5821 cgcagcctgc gtcgtgtaac tcggcgccgc gtccgcggcc tgccgctgct gccaccacca
     5881 cagcgcgccc gcagcgatcg ccagccccgc gaccccgccc cacaacgcgg ggcgccggta
     5941 ccaggggagt gccgcgggct cgtcgagcaa gacggcgagt tcattcttcg attcgactcc
     6001 cggagtcggg gcgacgctct cggcagcagt gcgggaattc atgagcgggg cgcgcgcgca
     6061 gcgctgtcgg cggcggccgg agtcgagtcg ccggggtcgg gaacccagcc tccgccgagc
     6121 gccttgtaca ggcgcacatg gtcggcgctg acgtcggcac gcgcactggc gacgccgtcc
     6181 tgcgtgctga gctgggtgcg ctgggtttcg aggacgatct ggaagtccac caacccgctg
     6241 ccgtagcgct ggcgtgccag cagcgcagcg ttgctcgcgg cctcggcggc ctgctccagg
     6301 tgggccagcc gctcgcggtc gccgcggagg gcgacgagcg cgtcttcgac atccttgagt
     6361 gccgtcaata tcgcgctccg ataggtcgct tgcgcctgat ccagcgcggc ctcctgggcg
     6421 cgtacctggg cgcgtgccgc accgccgtcg aacaccggaa ccgagacgct ggcgaacagc
     6481 gcactgatca ccgaggcgcg gctggcgagc gagcccagcg tcattgcgct caggcccacc
     6541 gaaccaccga gctggaaggt cggccagcgc gccgcatcgg cctggtcggc gcgggcgacg
     6601 gcggcagcca cctgatcctc ggcggccctg acgtccggcc gctggcgcag cgtctcggca
     6661 gggatgcgca atgccaggtc gtccgcagcc tgcggcacgg cacccagcgg agccaactcg
     6721 ctcgacaagg ccgccggcgg ccggccggtc aagaccgcaa gcgcatggct gctctgctcg
     6781 atgccggttt gcagggccgg cacctgggcg ctcgtctgtt cggtcgcggc gcgcgcctgt
     6841 tcggcttcga gcgaggtgac gaggcccgcc tgcagccgcc actgcgtcaa ctgcaaggtc
     6901 tcctgctggc tgaccaggtt ggcacgggcg atctccaggc gcgcctgcgc gctgcgcaac
     6961 gcgatgtact cgagcgccac ttcggcggcg atcgacacgc gcacatcacc gagggttgcg
     7021 gcacttgcgc gagctgtggc ctcggcggcg cgcagcgcac tccggttggc accgaagaca
     7081 tcgacctccc agttcgcgtc caggcccgcc tgcaggttgt tgccggcgcc attgcgaccg
     7141 gtgctgtgtt gtgccgatgc cgagcctgcg atcaccggca acaatccggc cgccgacaca
     7201 tcgcgcagcg ccacggcctg gcgcagagcg gcctgagcgc ccgcgacgct ggtgttggcc
     7261 cgcagcgcct gatcgacgag agcggtgagc tccacgtcgc cgaagcgcgt ccaccactgg
     7321 acgagcggcg agggtccgtt cgccgcgacg ccttcggcga tcgaccatcc ggcgggtaca
     7381 tcggctgcct cgacggcgcc atgatgcgag cccaatgact cgcaaccttg cacggcaagc
     7441 gccagcatca gaacgccggc tagagtcggc acccgacccc ccgtccgttg cgcggtggtt
     7501 cggtcgcatt cgccgtgacg tttgttcatg aatgcgcccg ggacactcaa tcttagcttc
     7561 cagtgtcagc gcctcccgtt cgcgcgacct tgtcggcgat caactcggca cgatgcccgg
     7621 gactcgaagc gagactgtgg tgcttccggg tctcaaaccg agcggcgtgc cgccattgcc
     7681 cttgatgggg cctgcgttcg gatgcccacc tcagggtgtc aacgatgtct tgggtccctc
     7741 gcagcgaatc cgagccgaag atcagagtgc ctgaaccgga cggtcaggag cacccgctga
     7801 tggccgactg cgtgagttcg ctgccgcgcc ggtaagctgt ccttcgcgtc cagaggctcg
     7861 acctgccacg ggctgctttc cgagacttcg ggaaactcac gctcacggcc atgagcagcc
     7921 agtcgcaatt ggcggctttc gggcctcaat gggtatatcc actttcgttg agagccgggc
     7981 tttccacttt cagaaagatt ccgatcgtgg ttcggacatt cgcgacacgc tccacactcc
     8041 ggtcaagagc ccctcctttg tcgctcggtt gcgccgcttc cgtggggtgg atctactcta
     8101 cgacttcatc ggctcgaagc agtaccgacg aagggatgtg atgcccaggg ccttcgcggt
     8161 cttgagattg atcaccattt cgagtttcgc cggctcctgc
//
LOCUS       DASVHM010000474         2121 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1334703, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000474 DASVHM010000000
VERSION     DASVHM010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2121
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1334703"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..195)
                     /locus_tag="VF308_08955"
     tRNA            complement(120..195)
                     /locus_tag="VF308_08955"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(160..162),aa:Val,seq:tac)
     gene            complement(218..490)
                     /locus_tag="VF308_08960"
     CDS             complement(218..490)
                     /locus_tag="VF308_08960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEX7436824.1"
                     /translation="MNKSELIEHIARQADISKAAASRALEAMIGGVKTSLKKNNAVSL
                     VGFGTFSVGKRAARSGRNPRTGAAIKIKAAKVPKFRAGKALKDALN"
     gene            complement(681..1778)
                     /locus_tag="VF308_08965"
     CDS             complement(681..1778)
                     /locus_tag="VF308_08965"
                     /EC_number="1.1.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011810438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009027 - tartrate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0046395 - carboxylic acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tartrate dehydrogenase"
                     /protein_id="HEX7436825.1"
                     /translation="MKKTHRIAAIAGDGIGTETLPEGLRVLEAAATRFGIELAVDRFD
                     FASWNYYERHGSMLPDDWKERIGGHDAIFFGAVGWPAKIPDHVSLWGSLLKFRRDFDL
                     YVNLRPARLMPGVRSPLAGLAPGDIDMMIVRENTEGEYSSIGGRMFEGTEREVVVQET
                     VMSKVGIDRVLEYAFELAQSRPKKHLTSATKSNGIAITMPYWDERVEAMAKRYPDVRV
                     DRYHIDILAAHFVQRPQIFDTVVASNLFGDILSDLGPACTGTIGIAPSANINPARVHP
                     SLFEPVHGSAPDIAGQGIANPIGQIWSGALMLDFLGHREAHDAIIAAIEAVLDPGSGG
                     PKTRDLGGSATTSDLGRAVADALASASAASR"
     gene            complement(1792..>2121)
                     /locus_tag="VF308_08970"
     CDS             complement(1792..>2121)
                     /locus_tag="VF308_08970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007868494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7436826.1"
                     /translation="TASTVQMVAAFFVCLPLALLESEPMDWHPNLILAMAWSVGILTL
                     GGSSLLYLLIQRGEATAVTSLLYLVPPCTALMAWALFGESLTLLMMVGVALTVIGVAL
                     VVRRPTK"
BASE COUNT          350 a          678 c          737 g          356 t
ORIGIN      
        1 aaaaaatcga acatcggagt gcgcagatgc aagaaaggcg aaccgcggtt cgcctttcgt
       61 cgaagaggcc ggaattctag ccgagcgggt gcgcagggcc gcagggcgcg ggcacgggat
      121 ggtgggtgct gaggggctcg aacccccgac ctacgccttg taagggcgcc gctctaccag
      181 ctgagctaag cacccgcgcc gcgccgggcg cacggaatta gttgagcgcg tccttgagcg
      241 ccttgccggc gcgaaacttg ggcaccttcg cggccttgat cttgatcgcc gcgccggtgc
      301 gcgggttgcg gccgctacgc gcggcgcgct tgccgacgct gaaggttccg aagccgacaa
      361 gcgatacagc gttgttcttc ttcaggctcg tcttgacgcc accgatcatg gcctcgaggg
      421 cgcgcgacgc cgcggccttc gagatgtctg cctgcctggc gatgtgctcg atcagttcgg
      481 atttgttcac aaaagtttcc ccctcaggaa gctgtctcgg atgaattcgg cggtgcgtcg
      541 cgcggcggct gcaggtgctc gtcggggcga aacgattaca gcgttgcgaa tctgcagtgt
      601 caagcagggt atgggattct atttgcgcgc ggacaaagga attccttcac cgctcgtgca
      661 atagatgctt gacagcccgc ctaacgcgat gcagcgctcg ccgaagccag cgcgtcggcg
      721 acggcgcggc ccaggtccga ggtggtcgcg ctgccgccga gatcgcgcgt tttcgggcct
      781 cccgagcccg ggtcgagaac ggcttcgatc gcggcgatga tcgcgtcgtg tgcctcgcgg
      841 tggcccagga aatcgagcat cagcgcgccc gaccagatct ggccgatcgg gttggcaatc
      901 ccctggccgg cgatgtcggg agcagagccg tgcaccggct cgaacagcga cggatggacg
      961 cgcgcagggt tgatgttggc cgacggggcg atgccgatcg tcccggtgca cgccgggccg
     1021 aggtcgctca ggatgtcgcc gaacaggttg ctcgcgacga cggtgtcgaa gatctgcggt
     1081 cgctgcacga agtgggcggc gaggatgtcg atgtgatagc ggtcgacgcg cacgtcggga
     1141 tagcgcttgg ccatcgcctc gacccgctcg tcccagtaag gcatggtgat cgcgatgccg
     1201 ttcgacttgg tcgccgaggt gaggtgcttc ttcggccgcg actgcgccag ctcgaacgcg
     1261 tactcgagga cgcggtcgat gccgaccttc gacatcaccg tttcctggac gacgacctcg
     1321 cgctcggtgc cctcgaacat ccgcccgccg atgctcgagt actcgccctc ggtgttctcg
     1381 cgcacgatca tcatgtcgat gtcgcccggc gccagcccgg cgagcggcga gcgcacgccc
     1441 ggcatcaggc gcgccggccg gaggttgacg tagaggtcga agtcgcgcct gaacttgagc
     1501 agcgaccccc agagcgagac gtggtcgggg atcttcgccg gccagccgac ggcgccgaag
     1561 aagatcgcgt cgtggccgcc gatgcgctcc ttccagtcgt cgggaagcat gctgccgtgg
     1621 cgttcgtagt agttccacga ggcgaagtcg aagcggtcga ccgccagctc gatgccgaac
     1681 cgggtcgccg ctgcctcgag cacgcgcagc ccctcgggca gggtctcggt gccgatgccg
     1741 tcgccggcga tggcggcgat gcggtgcgtc ttcttcatgt cggtctctcc ttcacttcgt
     1801 cggccggcga acgaccaggg ccacgccgat cacggtcaat gccaccccca ccatcatgag
     1861 cagcgtgagc gactcgccga acagcgccca cgccatcagc gcggtgcagg gcggcaccag
     1921 gtagagcagg ctcgtcacgg cggtcgcttc gccgcgctgg atgagaaggt acagcaacga
     1981 gctgccgccg agggtgagga tgccgaccga ccaggccatc gcgaggatca ggttggggtg
     2041 ccagtccatc ggttcgctct cgagcagggc gagcggcagg cagacgaaga aggcagcgac
     2101 catctgcacc gtgctcgccg t
//
LOCUS       DASVHM010000475         5091 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_177361, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000475 DASVHM010000000
VERSION     DASVHM010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5091
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177361"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1502
                     /gene="uvrB"
                     /locus_tag="VF308_08975"
     CDS             <1..1502
                     /gene="uvrB"
                     /locus_tag="VF308_08975"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEX7436827.1"
                     /translation="ARNETDFSRGTFRVRGDTIDIFPAEHSELAIRIELFDDTLESLT
                     LFDPLTGRIRQKIPRFVIYPASHYATPRGRVVSAIETIKEELRGRLDELVKAGKLVEA
                     QRLEQRTRFDLEMLQEIGHCKGIENYTRHLSGAAPGQPPATLVDYLPKDALMFLDESH
                     VMIGQLGGMYNGDRARKTTLVDYGFRLPSALDNRPLKFEEFEAKMRQVVFVSATPAAY
                     ENQHAGQVIEQLVRPTGLVDPEVEVRPAATQVDDVLQEIRDRVVLNERVLITTLTKRM
                     AEQLTDYLADNGVKVRYLHSDIDTVERVEILRDLRLGAFDVLVGINLLREGLDIPEVS
                     LVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITDSMRRALDETVRRRAR
                     QITHNEAMGITPRSIVKKVRDLIDGVYSEKSAKDDLKRAAMAVEALSERDLGKRIKQL
                     EKQMLDHARNLEFEKAAQVRDQLAALREQAFGAPGRDNIVAIQAGQAKG"
     gene            1708..2241
                     /locus_tag="VF308_08980"
     CDS             1708..2241
                     /locus_tag="VF308_08980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcription factor"
                     /protein_id="HEX7436828.1"
                     /translation="MRLTTKGRFAVTAMIDLALREHSGPVALAAISGRQQISLSYLEQ
                     LFGKLRRHELVESTRGPGGGYSLGRKAEEITVADIIVAVDEPIDATGCAGKENCMGDD
                     AGRCMTHDLWASLNSKMIEFLDSVSLRKLVDEQLAKGVSIEEHPIKRAISSQPVVKPI
                     KITAPNSVFAFGAAFSK"
     gene            2287..3507
                     /locus_tag="VF308_08985"
     CDS             2287..3507
                     /locus_tag="VF308_08985"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011805375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0044571 - [2Fe-2S] cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HEX7436829.1"
                     /translation="MEMTPHFPIYLDYGATTPVDQRVVDAMIPWLREHFGNPASRSHA
                     WGWEAEAAVEKARAEVAALVGADPREIVWTSGATESDNLALKGAAQFYKTRGKHLITV
                     KTEHKAVLDTMRELERQGFEVTYLDVQEDGLLDLEKLKAAMRPDTILVSVMSVNNEIG
                     VIQDIAAIGAMCRERGIIFHVDAAQATGKVAIDLGKLPVDLMSLASHKTYGPKGIGAL
                     YVRRKPRVRIEAQMHGGGHERGMRSGTLPTHQIVGMGEAFRIAREEMGTEIERVRMLQ
                     QRLLTGLKDIEQTFVNGNLDKRVPHNLNMSFNFVEGESLIMGIKGIAVSSGSACTSAS
                     LEPSYVLRALGRSDELAHSSLRMTIGRFTTAEEIDYVIMTLKDRVAKLRDLSPLWDMY
                     KEGIDISTIQWAAH"
     gene            3533..3931
                     /gene="iscU"
                     /locus_tag="VF308_08990"
     CDS             3533..3931
                     /gene="iscU"
                     /locus_tag="VF308_08990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HEX7436830.1"
                     /translation="MAYSDKVVEHYENPRNVGSFDKGDDTVGTGMVGAPACGDVMKLQ
                     IKVNPETGLIEDAKFKTYGCGSAIASSSLVTEWVKGKSLDEALTIKNTHIAEELALPP
                     VKIHCSILAEDAIKAAVDDYRAKKPNPAAH"
     gene            3935..4258
                     /gene="iscA"
                     /locus_tag="VF308_08995"
     CDS             3935..4258
                     /gene="iscA"
                     /locus_tag="VF308_08995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017874702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HEX7436831.1"
                     /translation="MAVTLTEAAARHVTRYLGKRGKGVGVRLGVKTTGCSGLAYKLEY
                     ADEMAPEDVVFEGHGVKVLVDPKSLPYIDGTELDFVREGLNEGFKFHNPREKDRCGCG
                     ESFRV"
     gene            4337..4855
                     /gene="hscB"
                     /locus_tag="VF308_09000"
     CDS             4337..4855
                     /gene="hscB"
                     /locus_tag="VF308_09000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007828191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0051259 - protein complex oligomerization
                     [Evidence IEA];
                     GO_process: GO:0097428 - protein maturation by iron-sulfur
                     cluster transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HEX7436832.1"
                     /translation="MKLDSDDFELFAIERRFAQDRSALDARWRSLQGEVHPDRFATQG
                     AAAQRIAMQWAMRVNEAYERLKDPLKRAAYLCELNGAPVEAENNTAMPAAFLVQQLEW
                     REALDAADSAARIEGLAGAVTTHRRALLDRLETLLDRKHDYQAAAQQVRALMFVERFA
                     HDVERRLEALGQ"
     gene            4859..>5091
                     /locus_tag="VF308_09005"
     CDS             4859..>5091
                     /locus_tag="VF308_09005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020425040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEX7436833.1"
                     /translation="MALLQISEPGGAPDPHQRRIAVGIDLGTTHSLVAAVRNGVAECL
                     PDEAGRVILPSAVRYLPGGRREIGRAALGEAAN"
BASE COUNT          953 a         1663 c         1680 g          795 t
ORIGIN      
        1 acgcccgcaa cgagaccgac ttctcgcgcg gcacgttccg ggtgcgcggc gacacgatcg
       61 acatctttcc ggccgagcac agcgagctcg cgatccggat tgagctcttc gacgacacgc
      121 tcgagtcgct gacgctgttc gacccgctca ccggccggat ccggcaaaag atcccgcgtt
      181 tcgtgatcta tccggccagc cactacgcga cgccgcgcgg tcgcgtcgtc tcggcgatcg
      241 agacgatcaa ggaggagctg cgcggccggc tcgacgagct ggtcaaggcc ggcaagctgg
      301 tcgaggcgca gcggctcgag cagcgcaccc ggttcgacct ggagatgctg caggagatcg
      361 gtcactgcaa gggcatcgag aactacaccc gccatctctc gggcgcggcg ccggggcagc
      421 cgccggcgac gctcgtcgac tacctgccga aggacgcgct gatgtttctc gacgagagcc
      481 acgtgatgat cggccagctc ggcggcatgt acaacggcga ccgggcgcgc aagaccacgc
      541 tcgtcgacta cggctttcgg ctgccgtcgg cgctcgacaa ccggccgctc aagttcgagg
      601 aattcgaggc caagatgcgc caggtggtgt tcgtgtccgc gaccccggcc gcctatgaaa
      661 accagcacgc cggccaggtc atcgagcagc tggtgcggcc gaccggtctc gtcgacccgg
      721 aagtcgaggt gcgtcccgcg gcgacgcagg tcgacgacgt gctgcaggaa atccgcgacc
      781 gcgtcgtcct gaacgagcgt gtcctgatca cgacgctgac caagcgaatg gccgagcagc
      841 tcaccgacta tctcgccgac aacggcgtca aggtgcgcta tctgcacagc gacatcgaca
      901 cggtcgagcg ggtcgaaatc ctgcgcgacc tgcgcctggg cgccttcgac gtgctggtcg
      961 gcatcaacct gctgcgcgag ggcctcgaca ttcccgaggt gtcgctggtc gcgatcctcg
     1021 acgccgacaa ggaggggttc ctgcgctccg aacgcagcct gatccagacg atcggccggg
     1081 cggcgcgcaa cctgaacggc cgggccatcc tctacgccga ccggatcacc gactcgatgc
     1141 gccgtgcgct cgacgagacc gtgcgccgcc gcgcccggca gatcacccat aacgaagcga
     1201 tggggatcac tccgcgcagc atcgtcaaga aggtgcgcga cctgatcgac ggggtctaca
     1261 gcgaaaagag cgcgaaggac gacctgaaac gcgcggccat ggcggttgag gcgttgagcg
     1321 aacgcgacct cggcaagcgc atcaagcaac tcgaaaagca gatgctcgat cacgcccgca
     1381 acctcgagtt cgagaaggcg gcgcaagttc gcgaccagct cgccgctctg cgcgagcagg
     1441 cgttcggcgc cccggggagg gacaatatcg tggcgatcca ggccggccag gcgaagggct
     1501 gagcgcgatc gcggcgccga tgtaggacgg cgcgccgctt ccctgtcgga agacgccgca
     1561 gaggggaaag acccctcttg cctacggaac ttcccaggcc aaagccgacc gaaatggtag
     1621 gtttccgcta tactcgagta aattgctcgg gatagcggcg ccttcagggc aattgccatt
     1681 ccgacgctcg cttatgagga gatttttatg cgtttgacca ccaaaggccg gtttgccgtg
     1741 accgccatga tcgacctcgc gcttcgcgag cactctggcc ccgtcgcgct ggcggccatc
     1801 agcgggcgcc agcagatttc gttgtcgtac ctcgaacagc tgttcggcaa gttgcgccgc
     1861 catgaactgg tcgagagcac ccgcggcccc gggggcggct attcgctcgg ccgcaaggcg
     1921 gaggaaatca cggtggccga catcatcgtt gccgtcgacg agccgatcga cgcgaccggt
     1981 tgcgccggca aggaaaactg catgggcgac gacgccgggc gctgcatgac acacgacctg
     2041 tgggcgagcc tgaattccaa gatgatcgaa ttcctggatt cggtgtcgct gcgcaagctc
     2101 gtcgacgagc aactggccaa gggcgtgtcg atcgaggagc atccgatcaa gcgggcgatc
     2161 tcgagccagc ccgtcgtcaa gccgatcaag attaccgcac cgaattcggt gttcgcgttc
     2221 ggtgcagcgt tttccaagtg acccttcccg cctcccgcgc gtgaacgcgc gggttgccga
     2281 ctcgccatgg aaatgacccc gcacttcccg atctacctgg actatggcgc gaccacgccg
     2341 gtcgaccagc gcgtcgtcga cgcgatgatt ccctggctgc gcgagcactt cggcaatccc
     2401 gcctcgcgca gtcatgcgtg gggctgggaa gccgaggctg cggtggagaa ggcgcgcgcc
     2461 gaagtcgccg cgctggtcgg tgccgacccg cgcgagatcg tctggacttc cggtgcgacc
     2521 gagtcggaca acttggcgct gaagggcgcg gcgcagttct acaagactcg cggcaagcat
     2581 ctgatcaccg tgaagaccga gcacaaggcg gtgctcgaca cgatgcgcga gctggagcgt
     2641 caagggttcg aggtgacgta cctcgacgtg caggaagacg ggctgctcga tctcgaaaag
     2701 ctcaaggcag cgatgcggcc cgacacgatc ctggtgtcgg tcatgtccgt caacaacgag
     2761 atcggcgtga ttcaggacat cgccgccatc ggcgcgatgt gccgcgagcg cggcatcatc
     2821 ttccacgtcg acgccgccca ggcgaccggt aaggtcgcga tcgacctggg caagctgccg
     2881 gtcgatctga tgagcctcgc gtcgcacaag acttacgggc ccaagggcat cggcgcgctc
     2941 tacgtgcggc gcaagccgcg cgtgcgcatc gaggcgcaga tgcacggcgg cggccacgag
     3001 cgcggtatgc gttcgggcac attgcccacg caccagatcg tcggcatggg cgaggctttt
     3061 cgcatcgccc gcgaggagat gggcaccgag atcgagcgtg tgcgcatgct ccagcaacgg
     3121 ctgctcacgg ggctcaaaga catcgagcag acgttcgtca acggcaatct cgacaagcgc
     3181 gtgccgcaca acctgaacat gtcgttcaac ttcgtcgagg gcgagtctct gatcatgggt
     3241 atcaagggca tcgccgtgtc gtcgggctcg gcctgcacgt cggcgagtct ggagcccagc
     3301 tatgtgctgc gggcgctcgg ccgcagcgac gaactcgccc attcgagcct gcgcatgacg
     3361 atcggccgct tcacgacggc cgaagagatc gactacgtga tcatgacgtt gaaggatcgt
     3421 gtcgcgaagc tgcgcgacct gtcgccgctc tgggacatgt acaaggaagg catcgacatc
     3481 agcaccattc agtgggcggc gcactgacgc tgtccggacc caggagaacg agatggccta
     3541 cagcgacaag gtggtcgagc actacgagaa cccgcgcaac gtcggttcct tcgacaaggg
     3601 tgacgacacg gtgggcaccg gcatggtcgg cgcgccggcc tgtggcgacg tgatgaagct
     3661 tcagatcaag gtcaatcccg aaacgggcct gatcgaggac gcgaagttca agacctacgg
     3721 ctgtggttcg gcgatcgcgt cgagttcgct cgtgaccgaa tgggtcaagg gcaaatcgct
     3781 cgacgaagcc ctgaccatca agaacaccca catcgccgag gaactggcct tgccgccggt
     3841 gaagattcac tgctcgatcc tcgccgaaga cgcgatcaag gcggcggtgg acgactaccg
     3901 ggccaagaag ccgaaccccg cggctcactg acgtatggcc gtcaccctga ccgaagcggc
     3961 ggcccgtcac gtcacgcgct atctcggcaa gcgcggcaag ggcgtcggcg tgcgcctggg
     4021 cgtcaagacg accggctgct cggggctcgc ctacaagctc gaatacgccg atgagatggc
     4081 gcccgaagac gtggttttcg aaggccacgg cgtgaaggtg ctggtcgatc cgaaaagcct
     4141 gccgtacatc gacggcaccg aactcgactt cgtccgcgaa ggcctgaacg aaggcttcaa
     4201 gttccacaac ccgcgcgaga aggatcgctg cggctgtggc gagtcgttcc gcgtctagcg
     4261 cccgttttcc ggggatcggg gcgcggctca agccgcgcct cgtcgtttcc acgctgccct
     4321 tcgtcctcca cccttcatga aactcgacag cgacgacttc gaactcttcg ccatcgaacg
     4381 ccgcttcgcg caggaccgat cggccctcga tgcgcgctgg cgttcgctcc agggcgaagt
     4441 ccatccggac cggttcgcca cccagggcgc agcggcccag cgcatcgcca tgcaatgggc
     4501 gatgcgcgtc aacgaagcgt atgagcgtct caaggatccc ctgaagcgcg cggcctattt
     4561 gtgcgagttg aacggcgcgc cggtggaggc cgagaacaac accgccatgc cggcagcctt
     4621 cctggtgcag caactcgagt ggcgcgaagc gctcgacgcg gccgattcgg cggctcgcat
     4681 cgaaggcttg gccggcgcgg tcacgacgca tcggcgcgcc ttgctggatc ggctcgagac
     4741 gcttctcgac cggaagcacg actaccaggc ggccgcgcag caggtccggg ccctcatgtt
     4801 cgtcgagcgc tttgcccatg acgtcgagcg gcgtctcgag gcgctgggac aatagcgcat
     4861 ggccttgctg cagatctcgg aaccgggggg tgcacccgac ccccaccagc gacgcatcgc
     4921 ggtcggcatc gacctcggga cgacgcattc actcgtcgct gccgtgcgca atggcgtggc
     4981 cgaatgcctg ccggatgaag ccgggcgcgt catcctgccg tcggccgtgc gctacctgcc
     5041 cggcggccgg cgcgagatcg gaagagccgc gctgggcgag gcggcgaacg a
//
LOCUS       DASVHM010000476         2162 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_827299, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000476 DASVHM010000000
VERSION     DASVHM010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_827299"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..944
                     /locus_tag="VF308_09010"
     CDS             <1..944
                     /locus_tag="VF308_09010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010463451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="twin-arginine translocation pathway signal"
                     /protein_id="HEX7436834.1"
                     /translation="NHGVWSDAGFLPGSEFNGAAAFLMKLNAPQGAEGNEVTAGPRWM
                     TIRSDNNDKFAQADGVWIGRRGTPTNVTAEGPALKGAENVVIAGIDHRETSFSPKAFE
                     QAYRFLTGAPAATLEVVPEARVVLDGKVSGLGLNNLQGSYANNLPLVGATLEVYATDP
                     ATGERRGPAAHRKSIGADGLWGPFVADGTASYEFVISAPGYAATHIYRSPFARSSRIV
                     NLRADRLADADKDAAAVIVLTRPRGYFGVPRDRISLDGQSPPAGIPPGTPGLSTAKLK
                     LTEAPGRAVAGEFNGERVVGRAWPAANNEVVFLELHN"
     gene            1066..>2162
                     /locus_tag="VF308_09015"
     CDS             1066..>2162
                     /locus_tag="VF308_09015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013428543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent hydrolase"
                     /protein_id="HEX7436835.1"
                     /translation="MAELKINGARLWASLMEMARIGATPKGGVCRLALTDLDRDGRDL
                     FVTWCKEAGCTVKVDQMGNIFARRPGRNNKLAPVGTGSHLDSQPTGGRFDGVYGVLAG
                     LEVIRTLNDLGIQTERPVEASVWTNEEGSRFAPAMVASGVYAGVFTLEYGLSRTDAEG
                     RTMGEELQRIGYAGSEPMGGRPVHAFFETHIEQGPILEAEGQTIGVVTDAQGQRWYEL
                     TLTGQESHAGPTPMAVRRDALLGAARVIQLVNEIGLKHAPLAVSTVGMINSYPNSRNV
                     IPGRAFLTVDFRCPVNDELTMMDAELKEGVARIAAASRLEHELKQIFQYDCVHFDESC
                     VAMVRAGAERLGYSTRNIVSGAGHDACYMSKV"
BASE COUNT          367 a          745 c          734 g          316 t
ORIGIN      
        1 cgaaccacgg ggtctggtcc gatgccggct tcctgcccgg cagcgagttc aacggcgcgg
       61 ctgcgttcct gatgaagctc aacgcgccgc aaggcgcaga gggcaacgag gtcacggccg
      121 gcccgcgttg gatgacgatc cgctccgaca acaacgacaa gttcgcccag gccgatggcg
      181 tctggatcgg acgccgcggc acgccgacga acgtgaccgc ggagggcccg gcgctcaagg
      241 gtgccgagaa cgtcgtgatc gccggcatcg atcaccgcga gacgtcgttc agcccgaagg
      301 ccttcgagca ggcgtatcgc ttcctcaccg gcgcgccggc agccacgctc gaggtcgtgc
      361 ccgaggcgcg ggtcgtgctc gatggcaagg tgagcggact cgggctcaac aatctgcagg
      421 gttcgtacgc gaacaatctg ccgctggtcg gcgcgactct cgaggtctat gccaccgacc
      481 cggcgacggg cgagcgccgc ggcccggcgg cccatcgcaa gagcatcggc gccgacggac
      541 tctgggggcc attcgtcgca gacgggacgg cgagctacga attcgtcatc tcggctccgg
      601 gctacgccgc cacgcacatc taccgctcgc cctttgcgcg ctcatcgcgc atcgtcaatc
      661 tgcgtgccga tcgtctcgcc gacgccgaca aggatgccgc cgcagtgatc gtgctgacgc
      721 ggccgcgcgg ctacttcggc gtgccgcgcg accggatcag cctcgatggc cagagcccgc
      781 cggccggcat tccgccgggc acgcccggcc tttcgaccgc gaaactcaag ctcaccgagg
      841 cgccgggtcg cgccgtcgcc ggcgaattca acggcgagcg cgtcgtcggc cgggcgtggc
      901 cggcggcgaa caacgaagtc gtgttcctag aactgcacaa ctgaggccgc acaccgggac
      961 tcggctggca ctcttcgtgc tcgcgccttt tggcattgcc ccgatggacg ggcgcccccg
     1021 aagcgggcat aaccgtgtat ccgtggaacc caacaggagt acgtcatggc agaactgaag
     1081 atcaacggtg cccgtttgtg ggcgagcctg atggagatgg cgagaatcgg cgccacgccg
     1141 aagggtggcg tctgccgcct cgcgctgacc gacctcgacc gcgacggccg cgacctcttc
     1201 gtcacctggt gcaaagaggc cgggtgcacg gtcaaggtcg accagatggg caacatcttc
     1261 gcgcgccggc ccggccgcaa caacaagctc gccccggtgg gcaccggcag ccacctcgac
     1321 agccagccga ccggtggccg cttcgacggc gtctacggcg tgctcgcggg gctggaggtg
     1381 atccgtacgc tgaacgatct cggcatccaa accgagcgcc cggtggaggc ttcggtctgg
     1441 accaacgagg aaggctcgcg cttcgccccg gccatggtcg cctcgggcgt gtacgcgggc
     1501 gtcttcacgt tggagtacgg cctttctcgc accgacgccg aaggcaggac gatgggcgag
     1561 gagttgcagc gcatcggcta cgccggcagt gagccgatgg gcggccggcc ggtgcacgcg
     1621 ttcttcgaaa cccacatcga acagggtccg atcctcgagg ccgaaggcca gaccatcggc
     1681 gtcgtcaccg atgcgcaagg ccagcgctgg tacgagctca cgctgaccgg ccaggaatcg
     1741 cacgccggcc cgacgccgat ggccgtgcgg cgcgacgcgc tgctcggtgc ggcccgggtg
     1801 atccagctcg tcaacgagat cggcctgaag cacgccccgc tggcggtctc gacggtgggc
     1861 atgatcaaca gctatccgaa ctcgcgcaac gtgattcccg gcagggcatt cctgaccgtg
     1921 gacttccgct gccccgtcaa cgacgagctg acgatgatgg atgccgagct gaaggaaggc
     1981 gtcgcccgca tcgccgcggc gagccggctc gaacacgaac tgaagcagat cttccagtac
     2041 gactgcgttc acttcgacga gagctgcgtg gcgatggtgc gcgccggcgc cgagcgcctg
     2101 ggctactcga cccgcaatat cgtctcgggc gccggccacg acgcctgcta catgtcgaag
     2161 gt
//
LOCUS       DASVHM010000477         1828 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_539173, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000477 DASVHM010000000
VERSION     DASVHM010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_539173"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..1811)
                     /locus_tag="VF308_09020"
     CDS             complement(120..1811)
                     /locus_tag="VF308_09020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7436836.1"
                     /translation="MQARDFLLAHREDYATAYRDFRWPALDTFNWALDHFDAMAAGND
                     APALRIVGEDGSDVVRSFWQMAERSAQVANHLRGLGVRRGDRLLLMLGNELALWEVML
                     AAVKLGAVMIPASALLTPEDLRDRLARGAVRHVVAASEQVPKFAALTGDFTRISIGAS
                     AAGWQRFEDSAAAPLAFVPDGATNADDPLLLYFTSGTTAQPKLVLHTHQSYPVGHLST
                     MYWIGLRPGDVHLNISSPGWAKHAWSCFFAPWNAGACVFIYNTARFNAQSLLATLATG
                     RVTSLCAPPTVWRMLIQEDLAAYRDRLSLREVIGAGEPLNPEIIEQVRAAWGLTLRDG
                     YGQTETTAQIGNSPGQPLKPGSMGRPLPGYRVALLDPQGHEAEEGEVCLVLSPRPVGL
                     MVGYQDSAEKTVEAMREGHYHTGDTALRDADGYITFVGRADDVFKASDYRISPFELES
                     ALIEHEAVAEVAVVPSPDPVRLAVPKAYLILTADAVPGPALAEAIFAFARRQLAPYKR
                     VRRIEFVTELPKTISGKIRRVQLRALEVERRAAGTRAEGEYFEEDFPDRAGGAGP"
BASE COUNT          273 a          641 c          648 g          266 t
ORIGIN      
        1 tcgaatacgg cgtcggcaag ggctacgcgg cgtacgaatc ggtgcaggcg catccgccga
       61 tctgaacagc gcgccgcgaa cgcccacgcg cgcggcgccg gccctttgcg ccgcgtgcgt
      121 cagggccccg cgcccccggc ccgatcagga aagtcttcct cgaaatactc gccctcggca
      181 cgcgtgcccg cggcgcggcg ttcgacttcc agcgcgcgca gctgcacgcg gcggatcttg
      241 ccggagatgg tcttcggcag ttcggtgacg aactcgatgc gccgcacccg cttgtacggc
      301 gcgagctggc gccgcgcgaa cgcgaagatc gcctcggcca gcgcgggccc cggcaccgca
      361 tcggcggtca ggatgagata cgccttcggc accgcgagcc gcaccggatc cgggctcggc
      421 accaccgcga cctcggccac ggcctcgtgc tcgatcaagg cgctttcgag ttcgaacggg
      481 ctgatgcgat agtccgaggc cttgaacacg tcgtcggcgc ggccgacgaa ggtgatgtag
      541 ccatcggcgt cgcgcagcgc cgtgtcgccg gtgtgatagt gcccctcgcg catcgcctcg
      601 acggtcttct cggcgctgtc ctggtagccc accatcaggc cgacggggcg cggcgaaagg
      661 accagacaga cctcgccctc ctccgcctca tggccctgcg gatcgagcaa cgccacgcga
      721 tagccgggca gcggccggcc catcgagccg ggcttgagcg gctggccggg cgagttgccg
      781 atctgcgcgg tggtttcggt ctggccgtag ccgtcgcgca gcgtcaggcc ccaggccgcg
      841 cgcacctgct cgatgatttc ggggttgagc ggctcgccgg cgccgatcac ttcgcgcagg
      901 ctcagccggt cgcgataggc ggccaggtct tcctggatta gcatgcgcca gacggtgggc
      961 ggtgcgcaga ggcttgtgac gcggccggtc gcgagcgtcg ccagcaggct ctgcgcattg
     1021 aagcgcgcgg tgttgtagat gaagacgcag gcgcccgcgt tccagggcgc gaagaagcag
     1081 ctccatgcgt gcttggccca gcccggcgac gagatgttga ggtgcacgtc gcccggccgc
     1141 agcccgatcc agtacatcgt cgacaagtgt cccaccggat agctctgatg cgtgtgcagc
     1201 acgagcttgg gctgggcggt cgtcccggac gtgaagtaga gcagcagcgg atcgtccgca
     1261 ttcgtcgcac cgtccggcac gaaggcgagc ggcgcggccg ccgaatcctc gaagcgctgc
     1321 cacccggccg ccgatgcgcc gatgctgatg cgcgtgaagt cgcccgtcag cgctgcgaac
     1381 ttcggcacct gctcgctcgc ggcgacgacg tggcgcaccg cgccgcgggc gaggcggtcg
     1441 cgcaggtctt cgggcgtgag cagcgccgag gccgggatca tcaccgcgcc gagcttgacg
     1501 gccgcgagca tcacctccca gagcgcgagc tcgttgccga gcatcagcag caggcgatcg
     1561 ccgcggcgca cgcccagacc gcgcaggtga ttggcgacct gcgccgagcg ctcggccatc
     1621 tgccagaagg atcgcaccac gtcgctgccg tcctcgccca cgatgcgcag cgccggcgca
     1681 tcgttgcccg cggccatcgc gtcgaaatgg tcgagcgccc agttgaacgt gtcgagcgcc
     1741 ggccagcgga agtcgcggta cgcggtcgcg tagtcctcgc ggtgcgcgag cagaaagtcg
     1801 cgggcctgca ggaacgcggc tgtcgatt
//
LOCUS       DASVHM010000478         2287 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_612658, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000478 DASVHM010000000
VERSION     DASVHM010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_612658"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /gene="mutL"
                     /locus_tag="VF308_09025"
     CDS             <1..203
                     /gene="mutL"
                     /locus_tag="VF308_09025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003064460.1"
                     /note="This protein is involved in the repair of
                     mismatches in DNA. It is required for dam-dependent
                     methyl-directed DNA mismatch repair. Promotes the
                     formation of a stable complex between two or more
                     DNA-binding proteins in an ATP-dependent manner without
                     itself being part of a final effector complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA mismatch repair protein MutL"
                     /protein_id="HEX7436837.1"
                     /translation="RARDELLSTMACHGAVRANRTLSLAEMNALLRDMERTDRSDQCN
                     HGRPTWRQITRKELDALFWRGR"
     gene            529..1290
                     /locus_tag="VF308_09030"
     CDS             529..1290
                     /locus_tag="VF308_09030"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019141081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HEX7436838.1"
                     /translation="MSELGIASRREADEWIAKGWVRVDGRVVSELGSRVVPGQHISVD
                     AKARRQQAARVTVLLNKPVGYVSGQAEDGYEPAVVLVTPQNQWREDRSGTHFVREHLR
                     SLVPAGRLDIDSVGLLVLTQDGRIAKQLIGEESDVEKEYLVRVATTAGAALTPDKLGP
                     LRHGLELDGEALRPAQVEWINPEQLRFVLVQGKKRQIRRMCEAVGLQVLGLKRVRIGG
                     VVLGDLPPGQWRYLRADEAFTPAAALRGAAPASSA"
     gene            complement(1430..1705)
                     /locus_tag="VF308_09035"
     CDS             complement(1430..1705)
                     /locus_tag="VF308_09035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436839.1"
                     /translation="MDLHPSRRDLRLSSGVILFVYVAAHLANHALGLTSIAAAERGLR
                     VAVAVWQSPLGTLVLYSAAATHIALALLAIYYFCSVHPYMSGRVVVR"
     gene            complement(1843..2073)
                     /locus_tag="VF308_09040"
     CDS             complement(1843..2073)
                     /locus_tag="VF308_09040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436840.1"
                     /translation="MALVGVAVTGAWVAESKLAKSAVKYVDVGRDQSKDCDDCIQFMS
                     GKTAKDRGACKIVEGEISPHGHCIAFAPKPKK"
     gene            complement(2156..>2287)
                     /locus_tag="VF308_09045"
     CDS             complement(2156..>2287)
                     /locus_tag="VF308_09045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007876629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HEX7436841.1"
                     /translation="TDIMPGKTATLRLTPDKTGSFIFLCDVFCGTGHEDMNGTLVVA"
BASE COUNT          399 a          774 c          781 g          333 t
ORIGIN      
        1 tgcgcgcccg cgacgagctg ctctcgacca tggcctgcca cggcgccgtg cgcgccaacc
       61 gcacgctgag ccttgcggag atgaacgcgc tgctgcgcga catggaacgc accgatcggt
      121 cggaccagtg caaccatggc cggccgacct ggcgccagat cacgcgcaag gaactcgacg
      181 cgctgttctg gcgcggtcgc tgaagcccgc cacctctgac gctcgcccgt ttcgcacgca
      241 ccgcccatgg ccacgctcaa gctccgcaaa cccgccgcgc ccgccggtgc gcccgcaagc
      301 ccgaagcgcg cgccactgcg ccgcggcgcg ttgcggccgc gaccgacgct ggctgaggcg
      361 caagcccggc gcaccgagcg tgacgcaccg acgcgtgaac caccgcaaag gcgccgcgct
      421 gagcgggcga gtgcgcatgg cgccgaacca ccgcccgtgc gccgcgccaa accgtccgcg
      481 gcgggcgcct cgggtcatag cgacggcagc ctgcggcttt cgaagcgcat gagcgagctc
      541 ggcatcgcct cgcgccgcga ggccgacgaa tggatcgcca agggctgggt gcgggtcgac
      601 ggcagggtcg tgagcgagct cggttctcgc gtcgtgccgg gccagcacat cagcgtcgac
      661 gcgaaggcgc gccgccagca ggccgcgcgg gtcacggtgc tcctgaacaa gccggtgggc
      721 tatgtgagcg gtcaggccga agacggctac gagccggccg tggtcctggt cacaccgcag
      781 aaccagtggc gcgaagaccg ttccggcacg cacttcgtgc gcgaacacct gcgcagcctg
      841 gtgccggcgg gccgcctcga catcgattcg gtcggcctgc tcgtgctgac gcaagacggg
      901 cgcatcgcca agcaattgat cggcgaggag agcgacgtcg aaaaggagta cctggtccgc
      961 gtcgcgacga cggcgggcgc cgcgcttacc cctgacaagc tcgggccgct gcgccacggg
     1021 ctcgaactcg acggcgaagc gctgcggccg gcacaggtcg aatggatcaa cccggagcag
     1081 ctgcgcttcg tgctcgtgca aggcaagaag cgccagatcc gccgcatgtg cgaagcggtc
     1141 ggcctgcagg tgctcggcct gaaacgcgtg cgcatcggcg gcgtggtgct gggcgacctg
     1201 ccaccgggcc agtggcgcta cctgcgcgcc gatgaagcgt tcacgccggc cgccgctctg
     1261 cgcggcgccg caccggcatc gagcgcctga gcgaaagcga cccgttcctc gcgcttcagg
     1321 ggtggtcgcg acgcggccgc accggacagt ttggaatccg gcgcgaagaa tgaacccgct
     1381 gctgtgaccc gcttcgccgc gggcggggtg ggggcgcgcc gagccacgtt tagcgcacca
     1441 ccacgcgacc cgacatgtac ggatgcactg agcaaaaata gtagatcgca aggagggcca
     1501 acgcgatgtg cgtggcggcg gcgctgtaca ggaccagcgt gccgagcggg ctttgccaga
     1561 cggcgacggc gacgcgcagt ccccgttcag ccgccgcgat cgaagtcagc cccaacgcgt
     1621 gattggcgag atgagcggcg acatagacga acaggatcac gccggacgaa agacgcagat
     1681 cacgacggct cggatgaagg tccatcaggc aggtcgcgtg cgcgagttcg tttcagggaa
     1741 ctgcggctac ccaggcacct acggcgccgg cgattcgatg attgacgatt gtggcgacga
     1801 agatgcccgc gatgatgggc atgggaaatc tgctcgcagg gctcacttct taggtttcgg
     1861 cgcaaacgcg atgcaatggc cgtgcgggct gatctcgcct tcgacgatct tgcaagcgcc
     1921 ccggtccttg gctgttttgc ccgacatgaa ctgaatgcag tcatcgcagt ccttgctttg
     1981 gtctctaccg acatccacgt atttcacagc cgatttggcg agcttgcttt cggcgaccca
     2041 agccccagtg accgcgacgc cgacgagtgc cacgcctgcg atcgcgccct cgtgaattca
     2101 ccggcacttc ggcgtttgcc atcggagcac cgtgcccgat ggacgtaaac acgcgtcagg
     2161 cgacgaccag cgtgccgttc atatcctcgt gcccggtgcc gcagaacaca tcacacagga
     2221 aaatgaagct gccagtcttg tcgggcgtga gtcgcagtgt ggcggtcttg ccgggcatga
     2281 tgtcggt
//
LOCUS       DASVHM010000479         2352 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_684507, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000479 DASVHM010000000
VERSION     DASVHM010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2352
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_684507"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            292..1314
                     /locus_tag="VF308_09050"
     CDS             292..1314
                     /locus_tag="VF308_09050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007858507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033225 - ATPase-coupled
                     2-aminoethylphosphonate transporter activity [Evidence
                     IEA];
                     GO_function: GO:0033226 - 2-aminoethylphosphonate binding
                     [Evidence IEA];
                     GO_process: GO:0033223 - 2-aminoethylphosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2-aminoethylphosphonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HEX7436842.1"
                     /translation="MKLLLAATILATSTSVLAQKTQLTVYTALETDQIKAYETGFNKV
                     NPNIEIKWVRDSTGVITAKLLAEKANPQADVVMGVAASSLALLDSQGMLVAYAPLNLD
                     AIMSAYRDKKNPPAWWGMDVWGATVCFNTVEAQKKNIPKPETWKDLTKPIYKGQVVMP
                     NPASSGTGYFDVTAWLTLWGDQNGKGGGWKYMDALHENIAQYTHSGSKPCNMAAAGEY
                     VVGISFEYRANSNKAKGAPIDLVFPKEGLGWDLEAFGIHKGTKKLEAAQKLADWASSK
                     DAMLLYGKNFAITAQPGVAAPLANVPADYEKRLVKMDFKAAADSRERVLAEWSKRYDS
                     KSEPKK"
     gene            1325..>2352
                     /locus_tag="VF308_09055"
     CDS             1325..>2352
                     /locus_tag="VF308_09055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033225 - ATPase-coupled
                     2-aminoethylphosphonate transporter activity [Evidence
                     IEA];
                     GO_process: GO:0033223 - 2-aminoethylphosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2-aminoethylphosphonate ABC transporter
                     ATP-binding protein"
                     /protein_id="HEX7436843.1"
                     /translation="MADYLRLEGIRKSFGTFEALKDIDLAITQGEFVCFLGPSGCGKT
                     TLLRIIAGLETQTAGRILQGERDISVLPPAERDYGIVFQSYALFPNLSVADNVAYGLV
                     NRKVAKATVAARVDELLKLVGLPGSGAKFPAQLSGGQQQRIALARALATSPGLLLLDE
                     PLSALDALERVRLRGEIRSLQRKLGVTTIMVTHDQEEALSVADRIVVMNHGVIEQIGT
                     PMTIYRDPATPFVADFVGKINVLSGRLHPGRDLRIGTSRFACEHDTAAERDVKIYLRP
                     EDVLARPISPGDANVFDGAIDKIEFLGSYCLVRVNAEAMGAQPITVYLSLNFLAEQGL
                     EVGSRLPL"
BASE COUNT          438 a          787 c          766 g          361 t
ORIGIN      
        1 ttgcgaggga gctcgtctgc aggagcgtga tggtcggatg aggggcgggc gcagtcgcgg
       61 cagcgggcat cgggacagta gacgcgatcg aatgccgatt gtcaacaatc tccaagaaac
      121 agttgacttg cttttgcacc cctgcctaga ctgcgtcggc ccgggcaagc gccgaactgt
      181 catcgacatg gcataggctt tgcacgcgga gcggcgctgg cgtcgttcga ttcgtcctca
      241 tacagatttc tcaaccaaga atcaagggag atgcgcatga atccgggttc catgaagcta
      301 ctgctcgcag cgacgatcct cgcgacctcg acgtcggtgc tggcgcagaa gacgcagctc
      361 accgtctaca ccgcgctcga gaccgaccag atcaaggcct acgagacggg cttcaacaag
      421 gtcaacccga acatcgagat caagtgggtg cgcgactcga cgggcgtgat caccgccaag
      481 ctcctggccg agaaggcgaa cccgcaggcc gacgtcgtga tgggcgtggc cgcgtcgagt
      541 ctggccctgc tcgactcgca gggcatgctc gtcgcctacg cgccgctcaa cctcgacgcg
      601 atcatgtcgg cctaccgcga caagaagaac ccgccggcct ggtggggcat ggacgtgtgg
      661 ggcgcgacgg tgtgcttcaa caccgtcgag gcgcagaaga agaacatccc caagcccgag
      721 acctggaagg acctgaccaa gccgatctac aagggccagg tcgtgatgcc gaacccggcg
      781 tcgtcgggca ctggctactt cgacgtcacg gcctggctca cgctctgggg cgaccagaac
      841 ggcaagggcg gcggctggaa gtacatggac gcgctgcacg agaacatcgc ccagtacacg
      901 cactcgggct cgaagccctg caacatggct gcggcgggcg aatacgtcgt cggcatctcg
      961 ttcgagtacc gcgccaacag caacaaggcc aagggcgcgc cgatcgacct ggtgttcccg
     1021 aaggaaggcc tcgggtggga cctcgaggcg ttcggaatcc acaagggcac caagaagctc
     1081 gaggcggcgc agaagctcgc cgattgggcg tcgagcaagg acgcgatgct gctctacggc
     1141 aagaacttcg cgatcaccgc gcagccgggc gtcgccgcgc cgctcgccaa cgtcccggcc
     1201 gactacgaga agcgcctcgt caaaatggac ttcaaggctg ccgccgacag ccgcgagcgc
     1261 gtcctcgcgg agtggagcaa gcgctacgac agcaagtccg agccgaagaa ataggtcgtc
     1321 gccagtggcg gactacctcc gcctcgaagg gatccgcaag tcgttcggga cgttcgaggc
     1381 gctcaaggac atcgacctgg cgatcaccca gggcgagttc gtctgcttcc tcggcccgtc
     1441 ggggtgcggc aagacgacgc tgctgcggat catcgccggc ctcgagacgc agaccgccgg
     1501 ccgcatcctg cagggcgagc gcgacatctc ggtgctgccg ccggccgagc gcgactacgg
     1561 catcgtcttc cagtcgtacg cgctctttcc caatctctcg gtcgccgaca acgtcgccta
     1621 cggcctcgtc aatcgcaagg tcgccaaggc gacggtcgcc gcacgcgtcg acgagttgct
     1681 gaagctggtc ggcctgcccg gcagcggcgc caagttcccg gcccagctgt cgggcgggca
     1741 gcagcagcgg atcgcgctcg cacgcgcgct tgccacgtcg cccgggctgc tcctgctcga
     1801 cgagccgctg tcggcgctcg acgcgctcga gcgggtccgt ctgcgcggcg agatccgctc
     1861 gctgcagagg aagctcggcg tgacgacgat catggtcacg cacgaccagg aagaggcgct
     1921 ctcggtcgcc gaccgaatcg tcgtcatgaa ccatggcgtg atcgagcaga tcggcacgcc
     1981 gatgacgatc taccgcgacc cggcgacgcc gttcgtcgcc gactttgtcg gcaagatcaa
     2041 cgtgttgtcg gggcgccttc atcccggccg cgacctgcgc atcggcacga gccggttcgc
     2101 gtgcgagcac gacaccgccg ccgagcgtga cgtcaagatc tacctgcggc ccgaggatgt
     2161 cctcgcccgg ccgatttcgc ccggcgacgc caacgtcttc gatggcgcga tcgacaagat
     2221 cgagttcctc ggctcgtact gcctcgtccg cgtcaacgcc gaggcgatgg gcgcgcagcc
     2281 gatcaccgtc tatctctcgc tcaacttcct cgccgagcag ggcctcgagg tcggcagccg
     2341 cctgccgctg aa
//
LOCUS       DASVHM010000480         1718 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_177998, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000480 DASVHM010000000
VERSION     DASVHM010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177998"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..479)
                     /locus_tag="VF308_09060"
     CDS             complement(<1..479)
                     /locus_tag="VF308_09060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7436844.1"
                     /translation="MDAQHEDLPPPSRLLMLMEGRAVLGLAAFYAALPWLRTAPPGDG
                     HPVMVLPGLAASDASTGPLRGYLAKLGYAVQGWELGRNLGRRQVVDLHLVPRLRELCA
                     RTGRSVSLVGWSLGGILAREMAKRAPQDVRLVITLGSPFAGGGRASNVARLLEAVSGR
                     "
     gene            594..>1718
                     /locus_tag="VF308_09065"
     CDS             594..>1718
                     /locus_tag="VF308_09065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436845.1"
                     /translation="MGTLFKALNLEPKTPVAGAKASSRKPLQDSDFPADAKRRKLADE
                     EARKTGRTIAEAKPDASGDGPKKSTVDGKIDGAVDDFIDEKGKQLRKLNKDMMPGFAD
                     VFEEMSPEEAFLDDMAKGAENAKEQIEFIQKTLAYAEKVGDAAALAPIAEASKNLQKI
                     SERVLGGLGKAGKAISTAKQIVVFYQALKGFADASGQMSADRGKSVEAWVASVKSLWN
                     ASKPFVDTFKDKAFTAALGGSEAAAAASATLAIVGAELYIGIRLLDQGVKNVNAYFER
                     LHRLTREDSDHVVADAPPQAPVAPLPFSTREETIASLKRHDEMERQKKALRAKNAKAA
                     KEEDATARALEDFNERVFPKVYLKYRPTIRDKIYGAYRKAG"
BASE COUNT          324 a          594 c          583 g          217 t
ORIGIN      
        1 cgcccgctga ccgcctcgag caggcgcgcc acattcgagg cgcggccgcc gccggcgaac
       61 gggctgccca gcgtgatgac caggcgcacg tcctgcggcg cgcgcttggc catctcgcgc
      121 gccaggatgc cgcccaggct ccagccgacc aggctcacgc tgcgcccggt gcgcgcgcac
      181 agctccctca ggcgcggcac caggtgaagg tcgacgacct gcctgcgccc gagattgcgt
      241 ccgagctccc agccctggac cgcgtagccg agcttggcga ggtatccgcg cagcgggccg
      301 gtcgaggcat cgctggcggc caggccgggc agcaccatga ccggatgtcc gtctcccggc
      361 ggggccgtgc gcagccacgg cagcgccgcg tagaaggcgg ccagcccgag caccgcccgg
      421 ccttccatca gcatcaagag ccgtgacggc ggcgggaggt cttcatgttg agcgtccacg
      481 gccgaaatag tattaccgtc gcgcgtccct ccgcgcgcaa ctttcggccg ccccggacta
      541 cgggcaccgc cgctcgactg tttcaccttt tctcgaagct ggaggagcca ctgatgggaa
      601 ctctgttcaa ggcgctcaac ctggagccga agacgccggt cgccggcgcc aaggcgagct
      661 cgcgcaagcc gctccaggac tcggactttc cggccgacgc caagcggcgc aagctcgccg
      721 acgaggaggc gcgcaagaca ggccgcacga tcgccgaagc gaagcccgac gcttccggcg
      781 acgggccgaa gaagagcacc gtcgacggga agatcgacgg cgccgtcgac gacttcatcg
      841 acgagaaggg caagcagctg cgaaagctga acaaggacat gatgcccggc ttcgccgacg
      901 tcttcgagga gatgtcgccc gaagaagcgt tcctcgatga catggccaag ggcgccgaga
      961 acgccaagga gcagatcgag ttcatccaga agacgctcgc ctacgccgag aaggtgggcg
     1021 acgccgcggc gctcgcgccc atcgccgagg cgtcgaagaa cctgcagaag atcagcgagc
     1081 gcgtgttggg cggcctcggc aaggcgggca aggcgatatc gacggccaag cagatcgtcg
     1141 tcttctacca ggcgctcaag ggcttcgccg acgcgagcgg gcagatgagc gccgatcgcg
     1201 gcaagtcggt cgaggcgtgg gtcgcctcgg tcaagtcgct ctggaacgcg tcgaagccgt
     1261 tcgtcgacac gttcaaggac aaagccttca ccgccgcact cggcggctcc gaggcggccg
     1321 cggcagcgag cgccacgctc gccatcgtcg gcgcggagct ctacatcggc atccgcctgc
     1381 tcgatcaggg cgtcaagaac gtcaatgcgt acttcgagcg cctgcaccgg ctgacgcggg
     1441 aggacagcga tcacgtcgtc gccgacgccc ccccgcaggc gcctgtcgcg ccgcttccct
     1501 tcagcacgcg cgaggagacg atcgccagcc tgaagcgcca cgacgagatg gagcggcaga
     1561 agaaggcgtt gcgcgcgaag aacgcgaagg ccgcaaaaga ggaagatgcc accgcccggg
     1621 cgctcgagga cttcaacgag agggtcttcc cgaaggtcta tctcaagtac cgcccgacga
     1681 tccgcgacaa gatctatggc gcttaccgca aggcgggg
//
LOCUS       DASVHM010000481         4392 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1404878, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000481 DASVHM010000000
VERSION     DASVHM010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4392
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1404878"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VF308_09070"
     CDS             <1..330
                     /locus_tag="VF308_09070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018311281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HEX7436846.1"
                     /translation="QQEMFVEINPAAANDRGIRNGEAVWVKSPTGARIRVVAQVTERV
                     GRDTVFLPFHFSGHWQGVDLKPYYPEGAAPVIRGEAVNTATTYGYDSVTMMQETKTTL
                     CQIERAA"
     gene            342..959
                     /gene="fdh3B"
                     /locus_tag="VF308_09075"
     CDS             342..959
                     /gene="fdh3B"
                     /locus_tag="VF308_09075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009667640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase FDH3 subunit beta"
                     /protein_id="HEX7436847.1"
                     /translation="MARMKFICDAERCIECNGCVTACKAEHDVPWGVNRRRVVTLNDG
                     VPGERSISVACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDTCIGCGYCSYACPFGAP
                     QFPTNGAFGLRGKMDKCTFCAGGPEANGSEAENAKYGRNRLSEGKLPACAEMCSTKAL
                     LGGDGDVVADIFRTRVLNRGKGSEVWGWGTAYGKPAQAKVEAKKS"
     gene            956..1192
                     /locus_tag="VF308_09080"
     CDS             956..1192
                     /locus_tag="VF308_09080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009241251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436848.1"
                     /translation="MTRLAAVCSVVLALGLGACGERAQTTAVGGEKKADTPSWQANGS
                     VYLAPGWTPGDRASWEAQLRNRAQAQNDYAAGVK"
     gene            1208..2380
                     /locus_tag="VF308_09085"
     CDS             1208..2380
                     /locus_tag="VF308_09085"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007861302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009326 - formate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009061 - anaerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HEX7436849.1"
                     /translation="MRSTIRSLGCAGVAALALVGAALAQGDPARKDDPVPMAAPPAAS
                     AGSPGITGTYLIPAEPKADESNAQRARTQPGNNAPFWRAVRESGNVPGTVNNAAAGEK
                     GVLIQAFTQYPGSKVTNAGEAWRQVRNRWIVPYGGALFVIVFLALAIYYWAKGPIGGH
                     EPNTGRVIERFTYFERAAHWSNAIAFCILAVSGLVMAFGKFLLLPIIGGTLFGWLAYA
                     LKTAHNFAGPLFAVSLVIVFLTFLRSNMPGRGDLTWLRKGGGMFGGVEPSSHRFNAGE
                     KLLFWGGVFLLGVFVVSSGLVLDKVLPGLDYLRGDMQIAHIVHSISAILMMAVFLAHI
                     YMGTIGLKGSYRAMKTGYVDEAWAREHHRYWYEEIRAGKIPVERGAPAGRFEQPAA"
     gene            2403..2798
                     /locus_tag="VF308_09090"
     CDS             2403..2798
                     /locus_tag="VF308_09090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436850.1"
                     /translation="MRSAPFVALIAAALVGPVLAKLPPLSDDAKAKAAEAAAKTAWSD
                     KVGAYKLCQSMDHVADVYRKDAKAAGKDAPAPVAGPPCGDPGPYASTITPAASKPIEA
                     SGAHSPAGMAVSPPSTNATAAQLSGGPKK"
     gene            2858..3727
                     /locus_tag="VF308_09095"
     CDS             2858..3727
                     /locus_tag="VF308_09095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010463295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEX7436851.1"
                     /translation="MRPTLRLTSASAALTHDVSARDEFGATRRISIPAERALTVFVDK
                     RELVTLMTLGATPELLVLGYLRNQRLVESVDDIDSITVDWDVQAAAVKTRAGIERFDQ
                     KTARRVVTTGCGQGTVFGDLMADLDSIHLPSALDPATRISQGALYGLLNAMRLQESTY
                     KSAGSVHGCALFRQQDLLTFVEDVGRHNAIDTIAGWMWLHGVDGRDKAFYTTGRLTSE
                     MVIKSAQMGVPIIVSRSGVTQMGHEVAARLGLTLFGRATNRHFLCYCGFDRFDAQPEP
                     VREGVAASSVPQA"
     gene            3724..>4392
                     /locus_tag="VF308_09100"
     CDS             3724..>4392
                     /locus_tag="VF308_09100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009520903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HEX7436852.1"
                     /translation="MTVPGGKVMPIQPLPHDAGAARRRKRQGPKGRQVDLAALDQVRR
                     ALGPLPLRRDLLIEHLHAIQDAHRQLTTAHLAALAQLLHLAQTEVFEVASFYHHFDIV
                     RENPDGGFDAPPRITVRVCEGLSCELAGARDLLRELPGILRADVRVVAAPCVGRCEQA
                     PVAVVHQNAIGASTCARIAAAVAANDTAPRVEPHVDLAAYRAAGGYRLLADCLEGRRE
                     VESVL"
BASE COUNT          703 a         1503 c         1518 g          668 t
ORIGIN      
        1 cagcaggaga tgttcgtcga gatcaatccc gccgccgcga acgaccgcgg catccgcaac
       61 ggcgaggcgg tctgggtcaa gtcgccgacc ggtgcgcgga tccgtgtcgt cgcccaggtc
      121 accgagcgcg tcggtcgcga cacggtgttc ctgccgttcc acttctcggg ccactggcag
      181 ggcgtcgacc tgaagccgta ctacccggag ggcgcggcac ccgtcattcg tggtgaagcg
      241 gtcaacaccg ccaccacgta cggctacgac agcgtcacga tgatgcagga aacgaagacg
      301 acgctgtgcc agatcgagcg cgccgcataa gggagaacca catggcaaga atgaagttca
      361 tctgtgacgc cgagcgttgc atcgagtgca acggctgcgt caccgcatgc aaggccgagc
      421 acgacgtgcc gtggggcgtg aaccggcgtc gcgtggtcac gctcaacgac ggcgtgccgg
      481 gcgagagaag catctcggtc gcctgcatgc actgctcgga tgcgccctgc atggcggtct
      541 gcccggtcga ttgcttctac cgcaccgacg aaggcgtggt gctgcacgac aaggacacct
      601 gcatcggttg cggctactgc tcgtacgcct gcccgttcgg agctccccag ttcccgacca
      661 acggcgcgtt cggcctgcgc ggcaagatgg acaagtgcac tttctgcgcc ggcggccccg
      721 aagccaacgg cagcgaagcc gagaacgcca agtacggccg caaccggctc tccgaaggca
      781 agcttccggc ctgcgccgaa atgtgctcga ccaaggcgct gctcggcggc gacggcgatg
      841 tggtcgccga catcttccgc acccgcgtgc tcaaccgcgg caagggcagc gaagtctggg
      901 gttggggcac ggcttacggc aagccggccc aggccaaggt cgaggcgaag aagtcatgac
      961 gcgtctcgca gcggtgtgca gcgtggtgct ggcgctcggt ctcggcgcct gcggcgaaag
     1021 ggcccagacg acggcggtcg gcggtgagaa gaaagccgac acgccgagct ggcaggcgaa
     1081 cggcagcgtc tatctcgcgc cgggctggac gcccggcgat cgggccagct gggaggcgca
     1141 gttgcgcaat cgggcgcagg cgcagaacga ctacgcggca ggcgtgaagt aggcgcgggg
     1201 agcatccatg cgaagcacga tccgaagctt gggttgcgcc ggcgtcgccg cgttggcgct
     1261 ggttggtgcg gcccttgcgc aaggcgaccc ggccaggaag gacgatccgg ttccgatggc
     1321 ggcgccgccc gcggcgagcg ccggcagccc cggcatcacc ggcacctacc tgattccggc
     1381 ggaaccgaag gccgacgaga gcaacgcgca gcgcgccagg acccagcccg gcaacaacgc
     1441 gccgttctgg cgcgccgtgc gcgagtcggg caacgtgccg ggcacggtca acaacgcggc
     1501 ggccggcgag aagggcgtcc tgattcaggc gtttacgcag taccccggct cgaaggtgac
     1561 caacgccggg gaagcgtggc ggcaggtgcg caaccggtgg atcgttccgt acggcggcgc
     1621 actgttcgtc atcgtcttcc tggcgctcgc gatctactac tgggccaagg gcccgatcgg
     1681 cggccacgag cccaacaccg ggcgcgtgat cgagcgcttc acctacttcg agcgcgcggc
     1741 gcactggagc aacgcgatcg cgttctgcat cctcgcggtc tcgggcctgg tgatggcgtt
     1801 cggcaagttc ctgctgctgc cgatcatcgg cggaacgctc ttcggctggc tcgcctatgc
     1861 gctcaagacc gcgcacaatt tcgccgggcc gctctttgcc gtctcgctcg tgatcgtgtt
     1921 cctgaccttc ctgcgcagca acatgccggg tcgcggcgac ctcacctggc tgcgcaaggg
     1981 tggcggcatg ttcggtggcg tggagccgtc atcgcatcgc ttcaacgccg gcgagaagct
     2041 gctgttctgg ggcggtgtgt tcctgctcgg cgtgttcgtg gtcagctccg ggctcgtgct
     2101 ggacaaggtc ctgcccggtc tcgactacct gcgcggcgac atgcagatcg cccacatcgt
     2161 gcattcgatt tcggcgatcc tgatgatggc ggtcttcctc gcccacatct acatgggcac
     2221 gatcggcctg aagggttcct accgggccat gaagaccggt tacgtcgacg aagcctgggc
     2281 ccgcgagcac catcgctact ggtacgaaga aatccgcgcc ggcaagatcc cggtcgagcg
     2341 cggcgcgccg gccggacgct tcgaacagcc ggccgcctga tcacgatatc aagaggaaag
     2401 ccatgcgttc agccccgttt gtcgccctga ttgccgccgc cctggtcggc cccgtgctgg
     2461 caaagctgcc accgctcagt gacgatgcca aggccaaggc cgccgaggcg gccgcgaaga
     2521 cggcgtggtc cgacaaggtc ggggcctaca agctctgcca gtcgatggac cacgtggccg
     2581 acgtctaccg caaggacgcc aaggcggcgg gcaaggatgc gcccgcgccg gtggcgggcc
     2641 cgccgtgcgg cgatccgggg ccttatgcgt caacgatcac cccggccgca tccaagccga
     2701 tcgaggcttc cggggcgcac tcgcccgccg gcatggcggt gtcgccgccg agcacgaacg
     2761 cgacggccgc gcagttgtcc ggcgggccga agaagtagcc acgcggcggc ggccggctgc
     2821 cgcaagcggg ccgattcctt ttgcgtacag ttgggggatg cgccccacgc ttcgcctcac
     2881 gtccgccagc gcagcgctga cgcatgacgt cagtgcgcgc gacgaattcg gcgccacgcg
     2941 ccgaatctcg atcccggccg agcgcgcgct cacggtcttc gtcgacaagc gcgagctcgt
     3001 cacgctgatg acgctcggtg ccacgcccga gcttctcgtg ctcggctacc tgcgcaacca
     3061 gcgcctcgtc gagtcggtgg acgacatcga ttcgatcacc gtcgactggg acgtgcaggc
     3121 cgccgcggtg aagacgcgag ccggcatcga gcgcttcgac cagaagaccg cccggcgcgt
     3181 cgtcacgacc ggttgcgggc agggcacggt attcggcgat ctgatggccg acctcgactc
     3241 gattcacctg ccttcggcgc tcgaccccgc gacgcgcatc agccagggcg cgctgtacgg
     3301 cttgctgaat gcgatgcggc tccaggagag cacctacaag tcggccggct cggtgcatgg
     3361 ttgcgcgctc tttcgccagc aggacttgct gaccttcgtc gaagacgtcg gccgccacaa
     3421 cgcgatcgac accatcgccg ggtggatgtg gctgcacggc gtcgacggcc gcgacaaggc
     3481 tttctacacg accggccggc tgacgagcga gatggtgatc aagtcggcgc aaatgggcgt
     3541 gccgatcatc gtctcgcgca gcggcgtcac ccagatggga cacgaagtgg ccgcccggct
     3601 cggcctcacc ctgttcggcc gggccacgaa ccgccacttc ctctgctact gcggcttcga
     3661 ccgtttcgac gcgcagccgg agccggtgcg cgaaggcgtg gcggcctcat cggtgccgca
     3721 ggcatgacag tgccgggcgg caaggtcatg ccgatccagc cgctgcctca tgacgccggc
     3781 gcggcgcgcc ggcgcaagcg ccaaggcccc aagggccggc aggtcgacct cgcggcgctc
     3841 gatcaggtcc ggcgggcgct cggcccgctg ccattgcgac gcgacctgct gatcgagcac
     3901 ctgcatgcga tccaggatgc gcaccggcag ttgacgacgg cgcatctcgc cgcgctcgcg
     3961 cagctgctcc atctggcgca gaccgaggtc ttcgaagtcg cgagcttcta tcaccacttc
     4021 gacatcgtgc gcgagaaccc cgacggcggc ttcgacgcac cgccgcgcat cacggtgcgc
     4081 gtgtgcgagg gtttgagttg cgagctcgca ggagcgcgcg acctgttgcg cgagttgccg
     4141 ggcatcctcc gcgccgacgt gcgcgtcgtt gccgcgccgt gtgtgggccg ctgcgagcag
     4201 gcgccggtcg cggtcgtgca ccagaacgcg atcggcgcct cgacctgcgc ccgaatcgcc
     4261 gccgcagtcg cggcgaacga caccgcgccg cgcgtcgagc cgcatgtcga cctcgcggcg
     4321 tatcgggccg cggggggcta tcgcctgctc gccgattgcc tcgagggccg gcgcgaggtc
     4381 gagtcggtgc tc
//
LOCUS       DASVHM010000482         3033 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1045229, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000482 DASVHM010000000
VERSION     DASVHM010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3033
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1045229"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..636
                     /gene="fliS"
                     /locus_tag="VF308_09105"
     CDS             199..636
                     /gene="fliS"
                     /locus_tag="VF308_09105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEX7436853.1"
                     /translation="MFSSAHQLGSRRPSVASYRDVNASTAIEGATPHRLVSLLYQSVG
                     SEIAAARGAIARSDIGEKGRAISHAVRIIEEGLLAPLDLTAGGAIAINLRDLYQYVVY
                     RLTMANLNTDDAALAECARLIEVLREGWDAIAGQVDMPARAAA"
     gene            669..968
                     /locus_tag="VF308_09110"
     CDS             669..968
                     /locus_tag="VF308_09110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FliT"
                     /protein_id="HEX7436854.1"
                     /translation="MNSVLLNYYEAIEQASQDMLEAARSGDWDHVVKLEGACALLIAQ
                     LKRNAAERPLASDEAQLKSRIMQRILVNDAEIRQLAEPWLEDLDNLLAGRPKTMH"
     gene            988..1746
                     /locus_tag="VF308_09115"
     CDS             988..1746
                     /locus_tag="VF308_09115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar regulator YcgR PilZN domain-containing
                     protein"
                     /protein_id="HEX7436855.1"
                     /translation="METRPAPMDALAGSNAGLDEFRVASPREIGVMLRELCDGNVPLN
                     LNASDGSVYTTTLWTLDTDRGSMGFCADVADTRMQTLLECEEVVVVGYLNNVKLQFDV
                     NNLVLVRGNRASVLSCTAPREMFRFQRRGAYRVRPLMRSSPTARLLHPADASLELTLR
                     VIDVSIAGCALFLPDDTPQPQPGVMLDRVEIDLDADTRFQVNMRLRHVTSINADARGV
                     RLGCEFVRASGDALRSLQRFIDQTQKRGKLLALD"
     gene            complement(1754..2164)
                     /locus_tag="VF308_09120"
     CDS             complement(1754..2164)
                     /locus_tag="VF308_09120"
                     /inference="COORDINATES: protein motif:HMM:NF016807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BLUF domain-containing protein"
                     /protein_id="HEX7436856.1"
                     /translation="MSTLRQLFYVSRVAESVGERDVRNILAISRRNNRMLDVTGCLSC
                     SGRHFAQILEGRDVAIDNLMGRIARDPRHSDFRLVLDRPIVLREHPLWSMAYRHDPDP
                     DETLEGLFTEPLPALRESLRMMVRLKPDTVMGAL"
     gene            complement(2207..2530)
                     /gene="fliE"
                     /locus_tag="VF308_09125"
     CDS             complement(2207..2530)
                     /gene="fliE"
                     /locus_tag="VF308_09125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011804772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEX7436857.1"
                     /translation="MNVTMKPFDFAQAVARAGLGTDGVPLRKPGSVEGVGFQKALGQA
                     LDAVSKTQNDAARMQREVQLDNPTVSLEQTMVAMQKAQIGFQATLQVRNRLVQAYSDI
                     MNMQV"
     gene            2697..>3033
                     /locus_tag="VF308_09130"
     CDS             2697..>3033
                     /locus_tag="VF308_09130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body M-ring protein FliF"
                     /protein_id="HEX7436858.1"
                     /translation="MDNAVALPSHLQDVSPASFAGRLAALPVRGKLSLGIGIAALAGV
                     VLAMTMWNSHGDYKVLYANLADKDGGAVIAQLAQMNVPYRMSEGGAAILVPAAQVHDL
                     RLKMATAGLP"
BASE COUNT          531 a         1043 c          978 g          481 t
ORIGIN      
        1 cagcagatcg cgacctggaa caagaacccg agctgagtcg aatctggccc gtgatgcggt
       61 cgcacgcggg gggccgcccc gcggcgtgcc ccgcgtttgc aagccgctct cctggccctg
      121 aaaacccccg ttgtaccgag gtaaagattc aacctcaggc gtcgataaac aaggcacaga
      181 cgcaaggagt agacggaaat gttcagcagc gcccatcagc tcggatcacg tcggccttcg
      241 gtcgcaagct atcgtgacgt aaatgccagc accgccatcg aaggggcgac cccgcacagg
      301 ctcgtcagcc tcctgtacca gtcggtcgga agcgaaatcg ccgcagcccg cggcgcgatc
      361 gcgcgttccg acatcggcga gaagggccgg gcgatctcgc atgccgtgcg catcatcgag
      421 gaaggcctgc tcgcgccgct cgacctgacg gccggtggcg cgatcgccat caacctgcgc
      481 gacctctacc agtacgtcgt ctatcgcctg acgatggcca atttgaacac cgacgatgct
      541 gcgctcgccg agtgcgcacg attgatcgag gtcctgcgcg agggctggga cgccatcgcc
      601 gggcaggtcg acatgccggc gagggccgcg gcatgagccg ggtcgcacga ctacagggaa
      661 tcaaagccat gaactccgtg ctgttgaact actacgaagc gatcgagcag gcgagccagg
      721 acatgctcga agccgcccgc agcggcgact gggaccacgt ggtcaagctc gaaggcgcct
      781 gcgcgctgct gatcgcccag ctgaagcgca acgcggccga gcggccgctc gcctccgacg
      841 aggcccagtt gaagtccagg atcatgcagc gcatcctcgt caatgacgcc gagatccgcc
      901 agctcgccga accctggctg gaagatctcg acaacctgct cgccggccgg ccgaagacga
      961 tgcactgagt caagacggat ctgcatgatg gaaaccagac ccgcaccgat ggatgccctg
     1021 gccggcagca acgccggcct cgacgaattc cgggtcgcct cgccgcgcga gatcggggtc
     1081 atgctgcgcg aactctgcga cggcaatgtg ccgctgaacc tgaacgcgag cgacggcagc
     1141 gtctacacga ccacgctctg gacgctcgac accgaccgcg gcagcatggg cttttgcgcc
     1201 gacgtggccg acacccgcat gcagaccttg ctcgagtgcg aggaagtcgt cgtcgtcggc
     1261 tatctgaaca acgtcaagct gcagttcgac gtcaacaacc tcgtgctggt gcgcggcaac
     1321 cgcgcgagcg tgctgagctg caccgcgccg cgcgagatgt tccggttcca acgccgcggc
     1381 gcctatcggg tgcggccgct gatgcgcagt tcgccgacgg cgcgcctgct tcaccccgca
     1441 gacgccagcc tggaactgac gctgcgcgtc atcgacgtga gcatcgccgg ctgcgccctc
     1501 ttcctgcccg acgacacgcc ccagccgcag cccggggtca tgctcgacag ggtcgagatc
     1561 gacctcgatg ccgacacgcg ctttcaggtc aacatgcggc tgcgccacgt cacctccatc
     1621 aatgcggatg cgcgcggcgt gcgcctgggc tgcgagttcg tccgcgccag cggcgatgcg
     1681 ctgcgctcgc tgcagcgctt catcgaccag acccagaagc gcggcaagct gctcgcgctc
     1741 gactagggcc ttcctacagc gcgcccatca ccgtatccgg cttgagccgg accatcatgc
     1801 ggagcgattc gcgcaacgcc ggcaggggct ccgtgaagag cccttcgaga gtctcgtcag
     1861 ggtcgggatc gtgccgatac gccatcgacc agagcgggtg ctcgcgcagg acgatcgggc
     1921 gatccagaac cagtcggaag tcgctgtggc gcgggtcgcg ggcgatgcgc cccatcaggt
     1981 tgtcgatcgc cacgtcgcgg ccctcgagga tctgcgcgaa gtgccggccc gagcaactca
     2041 ggcagccggt gacgtcgagc atccggttgt tgcgccgcga gatggcgaga atgttgcgca
     2101 cgtcgcgttc gcccacgctt tcggccacgc ggctgacata gaaaagctgt ctgagggtcg
     2161 acacgaggct ggcgaaggcg ctgtgaaacg gcgtgtgcgg tccggctcag acctgcatgt
     2221 tcatgatgtc ggaataggcc tgcaccagcc ggttgcgaac ctgcagcgtc gcctggaatc
     2281 cgatctgcgc cttctgcatc gccaccatgg tctgctcgag gctcacggtc gggttgtcga
     2341 gctgaacctc gcgctgcatg cgcgcggcgt cgttttgcgt cttgctgacc gcgtcgagcg
     2401 cctggccgag cgccttctgg aaaccgacgc cttcgacgct gcccggtttc ctgagcggca
     2461 cgccatcggt gccgaggccg gcccgggcca cggcctgggc gaaatcgaat ggtttcatgg
     2521 tgacgttcat gggtcactcc ttagccggca tcgtaagcag gcgagcccgg cgacggtggc
     2581 gcgaactgac gcgccaatgc ccggctgttc cggccatccg cgaaggggcc gatcccaata
     2641 atcgctcatc gacccgaggt ctttcctgcc ggtttctccg gctcgccacg aatcccatgg
     2701 acaacgccgt cgccctccct tcccacctgc aagacgtctc gcccgcctcg ttcgccggac
     2761 gcctcgcggc gcttccggtg cgcggcaagc tgagcctggg cataggcatc gcagcgctcg
     2821 ccggcgtcgt gctggcgatg acgatgtgga actcgcacgg cgactacaag gtgctctacg
     2881 ccaatctcgc cgacaaggac ggcggcgcgg tcatcgccca gctggcgcag atgaacgtgc
     2941 cctaccgcat gtccgaaggc ggcgcggcga tcctcgttcc cgcggcccag gtccacgacc
     3001 tgcgcctgaa gatggcgacg gccggcctgc cca
//
LOCUS       DASVHM010000483         1974 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_757336, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000483 DASVHM010000000
VERSION     DASVHM010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757336"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1707
                     /locus_tag="VF308_09135"
     CDS             <1..1707
                     /locus_tag="VF308_09135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEX7436859.1"
                     /translation="KIESKRIAARAGVPCVPGYHGDEQDPQHLLEQARAIGAPLLIKA
                     SAGGGGKGMRRVDDLADFVAHLDLARREAMRAFGDDRVLIEKLIERPRHLEVQLAGDR
                     HGNLVHLYERECSIQRNYQKVIEEAPAPRLPPAVREQLFSAALKLGSEIGYDSLGTVE
                     FVLAEGTDTPYFLEMNTRLQVEHPVTEMVTGLDLVEWQIRIACDETLPLSQADIAVSG
                     WAVEARINCEDPAHGHRPEFGTVGRYVEPALAGVRTDSGIASGSEISPHYDSMVAKLI
                     GHGPTRAQAIDRLRDGLVDFEAAGIGTNQSLLCAIVDHSLFRSGCLTTGFLGEAFEAG
                     WREDRAALHDARIAAALHALREGEGHARDPKDHWQRSSGYRFMAAAGRRAALRVQVAL
                     DGEADEVVVSIERDDGRHIVRVGGDEPLLVRASWLGADVMLLAPKHGPSRRFAFTREG
                     DVTVVNHVGTRWRLRVLSELRVLARAATQASAQGSEIKSELPGAVTEIHVAAGDAVAA
                     GDVLVVMEAMKLIFPLVAARAGTVAAVLCAPGDIVPRGHTLVQLEPLGPAPAPAATAE
                     VS"
     gene            1726..>1974
                     /locus_tag="VF308_09140"
     CDS             1726..>1974
                     /locus_tag="VF308_09140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HEX7436860.1"
                     /translation="MRGLYFEEFTVGMKFDHTLTRTVTEWDNMQFSMMTMNPQPLHID
                     AHFAATTEFGRPLVNSLFTLGLMIGISVADTTLRTTIAN"
BASE COUNT          325 a          668 c          684 g          297 t
ORIGIN      
        1 aagatcgaat ccaagcgtat cgccgcgcgc gccggcgtgc cgtgcgtgcc cggctaccac
       61 ggcgacgagc aggacccgca gcacctgctc gaacaggcgc gcgcgatcgg cgcgccgctg
      121 ttgatcaaag cgagcgccgg cggtggcggc aagggcatgc gcagggtcga cgacctggcc
      181 gacttcgtcg cccacctcga cctggcgcgg cgcgaagcga tgcgtgcgtt cggcgacgat
      241 cgtgttctga tcgaaaagct gatcgagcgg ccgcgtcacc tcgaggtgca actcgccggc
      301 gaccggcacg gcaacctggt gcacctgtac gagcgcgaat gctcgatcca gcgcaactac
      361 cagaaggtga tcgaggaggc gccggcgccg cgattgccgc cagccgtgcg cgagcaactg
      421 ttctcggccg ccttgaagct cggcagcgag atcggctacg actcgctcgg cacggtcgaa
      481 ttcgtgctgg cagaaggcac cgacacgccg tatttcctgg agatgaacac acgactgcag
      541 gtcgagcatc cggtcaccga gatggtgacg ggcctcgacc tcgtcgaatg gcagatccgc
      601 atcgcctgcg acgagacgct gccgctgtcg caggctgata tcgcggtcag tggctgggcc
      661 gtcgaagcgc gcatcaactg cgaagacccg gcccacggcc atcggcccga gttcggcacc
      721 gtcggccgat acgtggagcc ggcgctcgcc ggtgtgcgca ccgacagcgg catcgccagc
      781 ggctccgaga tttcgccgca ctacgactcg atggtcgcta agctgatcgg ccacggcccg
      841 acgcgggcgc aggcgatcga ccgcttgcgc gatgggctcg tcgacttcga ggcggccggc
      901 atcggcacga accagagcct gctctgtgcg atcgtcgacc acagcctctt tcgcagcggc
      961 tgcctgacga cggggttcct cggcgaggcc ttcgaagcgg gctggcgcga agaccgcgca
     1021 gccttgcacg acgcacgcat cgcggccgcc ctgcacgcac tgcgcgaggg cgaagggcat
     1081 gcgcgcgatc cgaaggacca ttggcagcgc agcagcggct atcgcttcat ggccgcggcc
     1141 gggcggcgcg cggccctgcg ggttcaggtg gcgctcgacg gcgaggccga cgaggtcgtg
     1201 gtttccatcg agcgcgacga cgggcgccac atcgtgcgtg ttggcggcga cgagcccctc
     1261 ttggtccgcg catcctggct cggcgccgac gtgatgctgc tggcaccgaa gcatgggccg
     1321 tcgcggcgct tcgcgttcac gcgcgaaggc gacgtcaccg tcgtcaacca cgtcggcacg
     1381 cgctggcgcc tgcgggtact gagcgagttg cgggtgctgg cccgcgcggc gacgcaagcg
     1441 tccgcgcagg gcagcgaaat caagtccgaa ttgcccggcg ccgtgaccga aatccacgtg
     1501 gcggccggcg atgcggtcgc tgccggcgac gtgctggtgg tgatggaggc gatgaagctg
     1561 atcttcccgc tggttgcggc gcgcgccggc accgtggcgg cggtgctgtg cgcaccgggc
     1621 gacatcgtgc cgcgtggcca tacgctggtg caactcgagc cgctcggtcc ggcgcccgcg
     1681 ccggcagcca cagcagaagt gtcctgacga aaccgaggag cctgcatgcg cggcctgtat
     1741 ttcgaagaat tcaccgtcgg catgaagttc gaccacacgc tgacgcgcac cgtcaccgag
     1801 tgggacaaca tgcagttttc gatgatgacg atgaacccgc agccgctgca catcgacgcg
     1861 cacttcgcgg ccacgaccga gttcggtcgg ccgctcgtca atagcctttt cacgctcggt
     1921 ctgatgatcg gcatttccgt ggccgacacc accttgcgca cgacgatcgc caac
//
LOCUS       DASVHM010000484         1751 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1262005, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000484 DASVHM010000000
VERSION     DASVHM010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1262005"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..785)
                     /locus_tag="VF308_09145"
     CDS             complement(<1..785)
                     /locus_tag="VF308_09145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436861.1"
                     /translation="MRSAVLEGHYGQRIEIDLCAGCHLTWFDDTESVRLSGLGWITLL
                     RGLHAAPEQTMREVASPLGCVRCAAPLKPIRNLSRFGRTSGHECPRGHGYFQTFGQLL
                     AERGLVRPLEARDRRALQREGRSLACLNCGAALPGVTATDACAYCRSPLLVLDVKRLL
                     ASLMVRHGLPLPADAAEPAAWACRACGDAVDPTRMTACPRCGHAVLAPSLADAVPFFD
                     ALEPQLREMRPRAPRPHGERLRERRSFRDTAFYRLIVAPLGYAG"
     gene            complement(847..1749)
                     /gene="lipA"
                     /locus_tag="VF308_09150"
     CDS             complement(847..1749)
                     /gene="lipA"
                     /locus_tag="VF308_09150"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HEX7436862.1"
                     /translation="MPIKIVAAEALKKPAWIRVKAGSASTRFYEIKKILREHRLHTVC
                     EEASCPNIGECFGNGTATFMIMGDKCTRRCPFCDVGHGRPDPLDADEPENLAKTIAAL
                     KLGYVVITSVDRDDLRDGGAGHFVACIRRTRELSPATKIEILTPDFRGRMDRALEILK
                     AAPPDVMNHNLETAPRLYKEARPGSDYAWSLNLLKRFKEFAPDVPTKSGLMVGLGETD
                     AEILEVMRDMRAHGIDMLTIGQYLAPSSHHLPVRRYVHPDTFRMFEAEAAKMGFTHAA
                     VGAMVRSSYHADQQAHAAGVETAV"
BASE COUNT          265 a          589 c          635 g          262 t
ORIGIN      
        1 ccggcgtagc cgagcggcgc gacgatcagg cgatagaacg ccgtgtcgcg aaagcttcgc
       61 cgctcgcgca gccgttcacc gtgcggacgg ggggcgcgcg ggcgcatctc gcgcaactgc
      121 ggctcgagcg cgtcgaagaa cggcaccgcg tcggccagcg aaggagccag cacggcgtgg
      181 ccgcagcgcg ggcaggcggt catgcgcgtc ggatcgacgg cgtcgccgca cgccctgcag
      241 gcccaggcgg cgggctcggc cgcgtcggcg ggcaacggca ggccatggcg aaccatcagg
      301 gacgccagaa ggcgcttcac atcgaggacg agcagcgggc tgcggcaata cgcgcacgca
      361 tccgtcgccg tcacgcccgg caaggctgcg ccgcagttga ggcaggccag gctgcgtccc
      421 tcgcgctgca aggcgcgccg gtcgcgcgct tcgagcggtc gtacgaggcc gcgctcggcg
      481 agcagctggc cgaacgtctg aaaatagcca tgaccccgcg ggcactcgtg accggaagtg
      541 cggccgaagc gcgaaagatt gcggatcggc ttcagcggcg cggcgcagcg cacgcatccg
      601 agcgggcttg cgacctcgcg catcgtctgc tccggcgctg catgcagccc gcgcaggagc
      661 gtgatccagc ccagacccga caggcgtacc gattccgtgt cgtcgaacca ggtcaggtga
      721 cagcccgcgc aaagatcgat ttcgatgcgc tgcccgtagt gcccctcgag caccgcggac
      781 cgcatcgatg cgcggcagtt cgtgcagacg cgcgcgcgct cgcccggcgg ggcggcggcc
      841 gccggctcag acggcggtct cgacacctgc cgcgtgcgcc tgctggtcgg cgtgatagct
      901 cgagcgcacc atggcgccga cggcggcatg ggtgaagccc atcttcgccg cttcggcctc
      961 gaacatgcga aacgtgtcgg ggtggacgta gcggcgcacc ggcaggtgat ggctgctcgg
     1021 cgcgaggtac tggccgatcg tcagcatgtc gatgccgtgc gcgcgcatgt cgcgcatcac
     1081 ctcgagaatc tccgcgtcgg tctcgccgag cccgaccatc aggccgctct tggtcggcac
     1141 gtcgggcgcg aattccttga agcgcttgag caggttcagc gaccaggcgt agtcggagcc
     1201 cgggcgcgct tccttgtaaa gcctcggcgc ggtctcgagg ttgtggttca tcacgtcggg
     1261 gggtgcggcc ttgaggattt cgagcgcgcg atccatgcgg ccacggaaat cgggcgtcag
     1321 gatctcgatc ttcgtcgccg gagacagctc gcgcgtgcgc cggatgcagg cgacgaaatg
     1381 cccggccccg ccgtcgcgca ggtcgtcgcg atcgacgctc gtgatcacga cgtagcccag
     1441 cttgagcgcg gcgatggtct tggcgaggtt ctcgggctcg tccgcgtcga gcggatcggg
     1501 gcggccatgg ccgacgtcgc agaacgggca gcgccgggtg cacttgtcgc ccatgatcat
     1561 gaaggtcgcg gtgccgttgc cgaagcactc gccgatgttc gggcagctcg cctcctcgca
     1621 gaccgtgtgc agccggtgct cgcgcaggat cttcttgatc tcgtagaagc gcgtcgaggc
     1681 cgaccccgcc ttgacgcgga tccaggccgg cttcttcagc gcttcggcgg cgacgatctt
     1741 gatcggaatg c
//
LOCUS       DASVHM010000485         1821 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_757434, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000485 DASVHM010000000
VERSION     DASVHM010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757434"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..163
                     /locus_tag="VF308_09155"
     CDS             <1..163
                     /locus_tag="VF308_09155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019430825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEX7436863.1"
                     /translation="IRQIVAAEDPAKPLSDSQISQMLDEQGIQVARRTVAKYREALKI
                     APTQLRKTM"
     gene            189..1478
                     /locus_tag="VF308_09160"
     CDS             189..1478
                     /locus_tag="VF308_09160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="THUMP domain-containing protein"
                     /protein_id="HEX7436864.1"
                     /translation="MPLPLFLPCAAGVEVLLAGEVRELLPKASVVEARGGVALEGEPL
                     EVMTLNLESRLAQRVLVEVGTCAYRAEQELYDLARGIDWSDWITPRHTLRVDTTAHRS
                     PLRSVNFAALRIKDAVCDRLRDETGQRPSVDTRHPDLPLVLHLGEEHAVLYVDSSGES
                     LFKRGWRIDKGDAPLKETLAAAMLAAAGWRGTPEAGGALHDPCCGSGTIAIEAAQIAC
                     GIAPGLKRGFAFEGLLPFATADMRAAWQRLKSHAQARIHPARVPVSGADVSFRMVDFA
                     RRNAERAGVAHAVTFNGGDALERPAPPIAADLHGTLMLNPPYGERIEPKGSRGAAREL
                     AEDGRARSVPADGETPNRELPGDFFARLAAHWKREYAPHPGGWTAFVLSPDMKLPGAM
                     RLKESRRIPMWNGPIECRLFRFDLVAGPARPAPDETA"
     gene            complement(1600..>1821)
                     /locus_tag="VF308_09165"
     CDS             complement(1600..>1821)
                     /locus_tag="VF308_09165"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008903011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016436 - rRNA (uridine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmE family RNA methyltransferase"
                     /protein_id="HEX7436865.1"
                     /translation="FVLSLDATLRWNAAMADPEGTALVVLSGPEGGLTAAEEEAARGA
                     GYTAVSLGPRVLRADTAPLAVLAWCGLRP"
BASE COUNT          277 a          675 c          623 g          246 t
ORIGIN      
        1 gatccgccag atcgtcgccg ccgaggaccc ggccaagccg ctctccgaca gccagatctc
       61 gcagatgctc gacgagcagg gcatccaggt cgcgcgccgc accgtcgcga aataccgcga
      121 ggccctgaag atcgcaccga cgcagttgcg caagacgatg tgatgccgct gcgtgtgaac
      181 cgaccctgat gccgttgccg ctcttcctgc cttgcgccgc gggagtcgag gtcctgctcg
      241 ccggcgaagt ccgcgagttg ctgcccaagg cgagcgtcgt cgaggcgcgc ggcggcgtcg
      301 cgctcgaggg cgaaccgctc gaggtgatga cgctgaatct ggagagccgc ctggcccagc
      361 gcgtcctcgt cgaggtcggc acctgcgcct atcgcgccga acaggagctc tacgatctgg
      421 cgcgcggcat cgactggtcc gactggatca cgccgcgcca caccttgcgg gtcgatacga
      481 ccgcgcaccg cagccccctg cgcagcgtca atttcgcggc cttgcgcatc aaggacgcgg
      541 tctgcgaccg gctgcgcgac gagaccggac aacggccgag cgtcgacacc cgccatcctg
      601 atctgccact ggtgctgcac ctgggcgaag aacacgcggt gctgtacgtc gacagctccg
      661 gcgaatcgct cttcaagcgc ggctggcgca tcgacaaggg cgatgcgccc ttgaaggaga
      721 cgctcgccgc ggccatgctc gcggcggccg gctggcgcgg aacccccgaa gcgggcggcg
      781 cgctgcatga cccctgctgc gggtccggca cgatcgccat cgaggcggcg cagatcgcct
      841 gcggcatcgc ccccggcctc aagcgcggct tcgccttcga aggcctgttg ccgttcgcga
      901 ccgccgacat gcgcgccgcg tggcaacgcc tgaaaagcca tgcgcaggcg cgcatccacc
      961 cggcccgcgt cccggtctcg ggcgccgacg tgtcgtttcg catggtcgac ttcgcgcgcc
     1021 gcaatgccga gcgcgccggc gtcgcccatg cggtcacctt caacggcggc gacgcgctcg
     1081 agcgcccggc accgccgatc gcggcggatc tgcatggcac gctgatgctc aacccgccct
     1141 acggcgagcg catcgagccg aagggctcgc gcggcgcggc ccgcgagctg gccgaagacg
     1201 gtcgggcgcg cagcgtcccc gccgacggcg aaacgccgaa ccgtgaattg ccgggcgact
     1261 tcttcgcacg cctcgcggcg cactggaaac gcgaatatgc gccgcacccg ggcggctgga
     1321 ccgccttcgt gctgagcccc gacatgaagc ttcccggcgc gatgcggctc aaggaatcgc
     1381 gccgcatccc gatgtggaat gggccgatcg agtgccgcct gttccgcttc gatctggtcg
     1441 ccggccccgc gcgacccgcg ccggacgaga ccgcatagcg cccgcggcgc ctgcgatcag
     1501 gcgacgcgct ggcgcacggt gaggttgcgg gtcagaagaa gcccttgcca cagagcacgc
     1561 agcagcaact gcagcttcat gtgcggcgtc gttcccgggt catggtcgga ggccgcacca
     1621 ggccagcacc gcgagcggcg cggtgtcggc gcgcagcacg cgcgggccga gcgagaccgc
     1681 ggtgtagcca gcgccccggg cggcttcctc ctccgccgcc gtcaggcctc cttcgggccc
     1741 gctcaggacg accagcgccg tgccctcggg gtcggccatc gcggcattcc agcgaagcgt
     1801 cgcatcgagg ctcaacacga a
//
LOCUS       DASVHM010000486         2466 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1262137, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000486 DASVHM010000000
VERSION     DASVHM010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1262137"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1647)
                     /locus_tag="VF308_09170"
     CDS             complement(<1..1647)
                     /locus_tag="VF308_09170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019572341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436866.1"
                     /translation="MDRTAASLAPAPVEERWTDTLTRWRYRYWPDHALGEILAKRWME
                     TAIPVIVLVLVAFALSRAIPNFLSPAALADTGRQAGEIGFIVLGMALVMIVGGIDLSV
                     GSMFALTNFCALYLMHVLKWAVAPAVVVTLLCGAALGALNGVLIGYFRLRAFLTTLIT
                     LIIYRALYDLLTADYATAIAGGFPESKAWDFIGNGDWLGVPTVVFVYAAVAIFGHIFL
                     TRLRPGWHVTAIGGSRRSAYNTGIAVRRTVALCYVASGVLTALGGVFFASRLATAGGD
                     IGVSLEITVLTAAVLGGISLGGGKGSVMKALVGTLIVLLIINGLTTMSLHGGYNRMVL
                     AGILLLAATIDIRWLKNRHRIVNKVYVSPTYHGMPPLPSTAPDCGTAWALNDRLRPAT
                     PIGLGRIEGPEDVILDRYDNLYAGSRHGDIIRFLAPDYERMEVFAHIGGTPLGMAFDR
                     QDNLYVCIGGMGLYRVTPERKVEKATDETNRSYTSINDDSRLRLADDLDITDDGRIFF
                     SEATVRFEMHEWATDGLEARGNGRIICFDTNTGKTHTVIRD"
     gene            complement(1648..>2466)
                     /locus_tag="VF308_09175"
     CDS             complement(1648..>2466)
                     /locus_tag="VF308_09175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019572342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEX7436867.1"
                     /translation="GLKKELEPLGVKIVVRDPNWNTNAGAQAVTTLISEKPDVIVVHN
                     PDVQTYAKLLQKAESQGIQIVQINMRSAYPSVVYVGADWIEVGEKATNAVVDACKGKS
                     NKIAVVQGALSAAASAYTLKGVENVLAKHPDIKVVSSQAADWDAAKAKGITQTVLKQH
                     PDLCGIVGFWDGMDSGTAAAIKEAGLTGKVFLATSGGGEQKGACDQVKSGAFDLDLSY
                     DVPTQASNMAASIKWLLQNPGKTGTAKGSIYTTLIPITKANAGNEGTCWKLGKT"
BASE COUNT          374 a          817 c          857 g          418 t
ORIGIN      
        1 gtcgcgaatg acggtgtgcg tcttgccggt gttggtgtcg aagcagatga tgcggccgtt
       61 gccgcgcgcc tcgagcccgt cggtcgccca ctcgtgcatc tcgaagcgca ccgtcgcctc
      121 cgagaagaag atgcggccgt cgtcggtgat gtcgaggtcg tcggccagcc gcaggcggct
      181 gtcgtcgttg atcgacgtgt agctgcggtt ggtctcgtcg gtcgccttct cgaccttgcg
      241 ctcgggcgtg acgcggtaca ggcccatgcc gccgatgcag acgtagaggt tgtcctggcg
      301 gtcgaacgcc atgccgagcg gcgtgccgcc gatgtgcgcg aagacctcca tccgctcgta
      361 gtcgggcgcg aggaaacgga tgatgtcgcc atggcgcgag ccggcgtaga ggttgtcgta
      421 gcgatcgagg atcacgtcct cggggccttc tatgcggccg aggccgatcg gcgtcgccgg
      481 ccgcagccgg tcgttcagcg cccaggcggt gccgcaatcg ggcgccgtcg acggcagcgg
      541 cggcatgccg tggtacgtcg ggctgacgta gaccttgttg acgatccggt gcctgttctt
      601 cagccagcgg atgtcgatcg tcgcggcgag caacaggatg ccggcgagca ccatccggtt
      661 gtagccgccg tgcagcgaca tcgtcgttag gccgttgatg atcaggagca cgatcagggt
      721 gccgacgagc gccttcatca ccgagccctt gccgccgccg aggctgatgc cgccgagcac
      781 cgccgccgtg agcacggtga tctcgaggct gacgccgatg tcgccgcccg cagtcgccag
      841 gcgcgacgcg aagaagacgc cgccgagagc ggtgagcacg ccgctcgcga cgtagcagag
      901 ggcgaccgtg cgacgcacgg cgatgccggt gttgtaggcc gatcgacgcg agccgccgat
      961 cgcggtgacg tgccagcccg ggcgcagccg cgtcaggaag atgtggccga agatcgcgac
     1021 cgcggcgtag acgaagacga ccgtcggcac accgagccag tcgccgttgc cgatgaagtc
     1081 ccacgccttc gattccggga agccgccggc gatcgcggtg gcgtagtcgg cggtgaggag
     1141 gtcgtagagc gctcggtaga tgatcagcgt gatgagcgtc gtcaggaagg cgcgcaggcg
     1201 gaagtagccg atcagcacgc cgttcagcgc gccgagcgcg gcgccgcaca gcagcgtgac
     1261 gacgacggcc ggcgccaccg cccacttcag cacgtgcatc aggtagagcg cgcagaagtt
     1321 cgtcaacgcg aacatcgagc cgaccgagag atcgatgccg ccgacgatca tcaccagcgc
     1381 catgccgagc acgatgaagc cgatctcgcc ggcctgccgc ccggtgtcgg cgagcgccgc
     1441 cggcgagagg aagttcggga tcgcgcgcga cagcgcgaac gcgaccagta ccagcacgat
     1501 caccgggatc gcggtctcca tccagcgctt ggcaaggatc tcgccgagcg cgtggtcggg
     1561 ccagtaccgg tagcgccagc gcgtcagcgt gtcggtccag cgctcctcga cgggcgccgg
     1621 cgcgagcgat gcggccgtgc gatccactca ggtcttgccc agcttccagc aggtgccttc
     1681 gttgccggcg ttggccttcg tgatcgggat cagcgtggtg tagatcgatc ccttcgcggt
     1741 tcccgtcttg cccgggttct gcagcagcca cttgatcgac gctgccatgt tgctcgcctg
     1801 cgtcggcacg tcgtagctca gatcgaggtc gaacgcgccc gacttgacct ggtcgcacgc
     1861 gcccttctgc tcgccgccgc cggacgtcgc gaggaagacc ttgcccgtga ggccggcctc
     1921 cttgatcgcc gccgcggtgc ccgagtccat gccgtcccag aagccgacga tgccgcacag
     1981 gtccggatgc tgcttgagca cggtctgcgt gatgcccttg gccttcgccg cgtcccaatc
     2041 cgccgcctgg ctcgagacga ccttgatgtc ggggtgcttg gcgagcacgt tctcgacgcc
     2101 cttcagcgtg taggcgctgg ctgccgccga cagcgcgccc tgcacgaccg cgatcttgtt
     2161 cgacttgccc ttgcaggcgt cgaccacggc gttggtcgcc ttctcgccga cctcgatcca
     2221 gtcggcgcca acgtagacga ccgagggata cgccgagcgc atgttgatct gcacgatctg
     2281 gatgccctgc gactccgcct tctgcagcag cttcgcgtag gtctgcacgt cggggttgtg
     2341 gacgacgatg acgtcgggct tctcgctgat cagcgtcgtc acggcctggg cgccggcgtt
     2401 ggtgttccag ttcggatcgc ggacgacgat cttgacgccg agcggctcga gttccttctt
     2461 caggcc
//
LOCUS       DASVHM010000487         2253 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_828196, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000487 DASVHM010000000
VERSION     DASVHM010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_828196"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..965
                     /gene="map"
                     /locus_tag="VF308_09180"
     CDS             162..965
                     /gene="map"
                     /locus_tag="VF308_09180"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEX7436868.1"
                     /translation="MTISIKSAADIEGMRIAGRLASEVLDMLTAHVKPGVTTEQLDKL
                     AHDLIVDEQHATPAPLNYAPPGYKPYPKSICTSINHQVCHGIPNDRVLKNGDILNIDV
                     TVIKDGWHGDTSRMFIVGEGSIAARRLCQMTYDAMWKGIVKVKPGARLGDIGHSIQTF
                     AENNGFSVVREFCGHGIGQRFHEEPQVLHYGRPGTLDELVPGMMFTIEPMINAGRREI
                     REMGDGWTIVTKDRSLSAQWEHTILVTDTGYEVMTLSSGSPPPPAFVGA"
     gene            995..>2253
                     /locus_tag="VF308_09185"
     CDS             995..>2253
                     /locus_tag="VF308_09185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020228187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HEX7436869.1"
                     /translation="MLAELDAPMPAVDRVGGLRAQFLRSKAELLAHFAAARPTAPSAR
                     RLLRALTRLVDQTLLALWQEAGMPEGTALLAVGGYGRGELFPHSDVDVLVLLPPAVAK
                     AAEAPLAAIEGFITACWDTGLEIGSSVRTVAECVVMAQSDVTVQTALLESRMLCGSRR
                     VVNHFRRSVGQVMDAKTFLRAKTLEMSQRHQKYEDTPYSLEPNCKESPGGLRDLQVVI
                     WVARAAGLGKSWSALAAKGLITPFEVKQLQRNEGLLKLIRARLHAISGRREDRLVFDL
                     QTAVAESFGYRSTRAQLASEVLMRRYYWAAKAVTQLNQILMLNIEERVNGSQNAPMRP
                     INEKFLERAGMLEVASDDLYQRDPHAILETFLVFQQTVGPKGLSARTLRALYNARDLM
                     DAEFRHDPVNRATFMKILKEPVGQTHA"
BASE COUNT          398 a          781 c          746 g          328 t
ORIGIN      
        1 acagcgcatt gtcgccttcg aaggtcgcca ggttcctaga cgggactgtc acgcgcgagg
       61 acaaaaggag gggcctgtgg tggtcgccga aagaccgcga ccggccgagg ccgatcggtg
      121 gaaacccgcg attctagagc cccgatgcga taattcgagg catgacgatc tccatcaaga
      181 gcgctgccga catcgaaggc atgcgcatcg cgggccgtct ggcatcggag gtgctggaca
      241 tgctcaccgc gcacgtgaaa ccgggcgtga cgaccgagca gctcgacaaa ctcgcccacg
      301 acctcatcgt cgacgagcag cacgcgactc cggcgccgct caactatgcg ccgcccggct
      361 acaaacccta cccgaagtcg atctgcacct cgatcaatca ccaggtctgc cacggcattc
      421 cgaacgaccg ggtgctgaag aacggcgaca tcctcaacat cgacgtcacc gtcatcaagg
      481 acggctggca cggcgacacg agccgcatgt tcatcgtcgg cgaaggctcg atcgcggccc
      541 ggcggctgtg ccagatgacc tacgacgcga tgtggaaggg gatcgtcaag gtcaagcccg
      601 gcgcccgtct cggcgacatc ggccactcga tccagacctt cgccgaaaac aacggtttct
      661 cggtcgtgcg cgagttctgc gggcacggca tcgggcagcg ctttcacgag gagccgcagg
      721 tgctgcacta cggccggccc ggcacgctcg acgaactcgt gcccggcatg atgttcacga
      781 tcgaaccgat gattaacgcg gggcgccgcg agatccgcga gatgggcgac ggctggacca
      841 tcgtcaccaa ggaccggtcg ctctcggcgc agtgggagca cacgatcctc gtcaccgaca
      901 ccggctacga agtgatgacg ctttcgtccg gcagcccgcc acctcccgcc ttcgtcggcg
      961 cctgagccgg gcctctcccc gggccccagc cgcaatgctc gccgagctcg atgcgccgat
     1021 gccggccgtg gaccgcgtcg gcggcctgcg cgcgcagttc ctgcggagca aggccgaact
     1081 gctcgcgcac ttcgccgcgg cgcggccgac cgcgccgtcg gcacggcgcc tgctgcgcgc
     1141 cctgacgagg ctggtcgacc agaccctgct cgcgctctgg caggaggccg gcatgccgga
     1201 gggcacggcg cttctcgccg tcggcggcta tgggcgcggc gaactctttc cgcactccga
     1261 cgtcgacgtg ctggtgctgc tgccgccggc ggtcgccaag gcggccgagg cgccgctcgc
     1321 ggcgatcgag ggcttcatca ccgcctgctg ggacaccggc ctcgagatcg gctcgagcgt
     1381 gcgcaccgtg gccgaatgcg tcgtgatggc gcagagcgac gtcaccgtgc agacggcgct
     1441 gctcgaatcg cgcatgctgt gcggttcgcg ccgcgtcgtc aaccacttcc ggcgcagcgt
     1501 cgggcaggtg atggacgcga agaccttcct gcgcgcgaag acgctcgaga tgagccagcg
     1561 ccaccagaag tacgaggaca cgccctactc gctcgagccg aactgcaagg agagcccggg
     1621 cggcctgcgc gacctgcagg tggtgatctg ggtggcacgc gcggccggtc tcgggaagag
     1681 ctggagcgcg ctcgcggcaa aggggctgat cacgccgttc gaggtcaagc aactgcagcg
     1741 caacgaaggc ctgctcaagc tgatccgcgc ccgcctgcac gcgatctcgg gccggcgcga
     1801 agaccggctc gtgttcgatc tgcagacggc ggtcgccgag agtttcggct accgctcgac
     1861 ccgggcgcag ctcgcctccg aggtgttgat gcggcgctat tactgggccg cgaaggcggt
     1921 gacccagctc aaccagatcc tgatgctcaa catcgaggag cgcgtcaacg gctcgcagaa
     1981 cgcgccgatg cggccgatca acgagaagtt cctcgagcgc gccggcatgc tcgaagtcgc
     2041 gagcgacgac ctgtaccagc gcgacccgca cgcgatcctc gagaccttcc tggtgttcca
     2101 gcagaccgtc ggaccgaagg gcctctcggc gcggaccctg cgcgcgctct acaacgcccg
     2161 cgacctgatg gatgcggagt tccgccacga tccggtgaac cgcgcgacct tcatgaagat
     2221 cctgaaggaa ccggtcggcc agacccacgc ctt
//
LOCUS       DASVHM010000488         2088 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_902959, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000488 DASVHM010000000
VERSION     DASVHM010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_902959"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..556)
                     /locus_tag="VF308_09190"
     CDS             complement(<1..556)
                     /locus_tag="VF308_09190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003076798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEX7436870.1"
                     /translation="MHSIEAGFWVVALLVALAIAFDFMNGFHDAANSIATVVSTGVLK
                     PQTAIVFAAFFNVLAIGIFHLNVAATIGKGIVPPGVVDHHVVFGALIGAIFWNVVTWW
                     YGIPSSSSHSLIGGIVGAVIAKAGAGALIAAGLWKTVLFIFLSPLLGFLLGALSMIAV
                     AHIFRRASPLKVDNLFRRMQLVSAG"
     gene            complement(560..1207)
                     /locus_tag="VF308_09195"
     CDS             complement(560..1207)
                     /locus_tag="VF308_09195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020226797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 domain-containing protein"
                     /protein_id="HEX7436871.1"
                     /translation="MLFGKLLPREGNFFELFNQHAGFIAEGARAFILLIRNYADLELR
                     ERYANDVGNFERQADRITAEVNRLLHKTFITPIDREQIHGLINAMDDILDLLQDATET
                     MSLYDVREMTDEVLRLGDISARCCERVQHAVSLLPRISQPATAEAAIKTCEEIDLLES
                     DADRVMRGAMSKLFREETDVRELIKLKTIYELLESISDRCEDVANLIEGVVLENS"
     gene            complement(1240..1902)
                     /locus_tag="VF308_09200"
     CDS             complement(1240..1902)
                     /locus_tag="VF308_09200"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014007813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019136 - deoxynucleoside kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HEX7436872.1"
                     /translation="MNSALRRFRHIAVEGPIGAGKSSLAVRLARHLGAELMLEQPAEN
                     PFLQRFYADMPGYAFQTQLFFLFQRLRQMQALAQPSVFASAVVTDFLFAKDAIFARVN
                     LSDDEHRLYRQMHAQLAPQVREPDLVVWLQAPASTLVQRIRRRGIAMEQGIAPAYLER
                     LAAAYAAHFHTYDGAPVFAVATEHFNPAERDADFALLVERLDAFKGRREFFNAQVDTT
                     LS"
     gene            complement(1907..>2088)
                     /locus_tag="VF308_09205"
     CDS             complement(1907..>2088)
                     /locus_tag="VF308_09205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEX7436873.1"
                     /translation="AYGDLRLEGPELILPHPRLHERAFVLLPLAEIAPGLVLPGLGRV
                     ANLLPAVTGQRIDKL"
BASE COUNT          381 a          653 c          726 g          328 t
ORIGIN      
        1 gcccggccga gaccagctgc atgcggcgga acaggttgtc gaccttgagc ggcgaagcgc
       61 gccggaagat gtgcgcgacc gcgatcatcg agagcgcgcc cagcaggaag ccgagcagcg
      121 gcgacaagaa gatgaagagc accgtcttcc agagtccggc ggcgatcagc gcgcctgcgc
      181 ccgccttggc gatcacggca ccgacgatgc cgccgatcag ggagtgcgac gagctcgacg
      241 ggatcccgta ccaccaggtc accacgttcc agaagatcgc accgatcagc gccccgaaga
      301 cgacgtggtg atcgaccacg ccgggcggca cgatgccctt gccgatggtc gccgcgacgt
      361 tgaggtggaa gatgccgatc gccagcacgt tgaagaaggc cgcgaagacg atcgccgtct
      421 ggggcttgag cacacccgtc gacaccaccg tcgcgatcga attcgcggcg tcgtgaaagc
      481 cgttcatgaa gtcgaaggcg atcgcgagcg cgaccagtag cgcgacgacc cagaacccgg
      541 cctcgatcga gtgcatgcgc taggagttct cgaggaccac gccctcgatc aggttcgcca
      601 cgtcctcgca gcggtccgag atcgattcga gcaactcgta gatcgtcttc agcttgatca
      661 gctcgcgcac atcggtctct tcgcgaaaga gcttggacat cgccccgcgc atgacgcggt
      721 cggcgtccga ctcgaggagg tcgatctcct cgcaggtctt gatcgcggcc tcggcggtcg
      781 ccggctggct gatgcgcggc agcagtgaga ccgcatgctg cacccgctcg cagcagcgtg
      841 cgctgatgtc gccgagccgc agcacctcgt cggtcatctc gcgcacgtcg tagagcgaca
      901 tcgtctcggt cgcgtcctgc agcaggtcga ggatgtcgtc catcgcgttg atcaggccgt
      961 ggatctgctc ccggtcgatc ggcgtgatga aggtcttgtg gagcagccgg ttcacctccg
     1021 cggtgatgcg gtcggcctgg cgctcgaaat tgccgacgtc gttcgcgtag cgttcgcgca
     1081 gttcgaggtc ggcgtagttg cggatcagca ggatgaaggc gcgcgcgccc tcggcaatga
     1141 acccggcgtg ttgattgaaa agctcgaaga agttgccttc gcgcggcagc agcttgccga
     1201 acagcatgag agtctcccgt ttaggtcgcg caccagggct caggacagcg tcgtgtcgac
     1261 ctgcgcgttg aagaactcgc gccgtccctt gaaagcgtcg aggcgttcga ccagcaaggc
     1321 gaaatcggcg tcccgttcgg ccggattgaa atgctccgtg gcgaccgcga ataccggggc
     1381 gccatcgtag gtgtggaagt gcgccgcgta ggccgcggcg aggcgctcga ggtaggccgg
     1441 tgcgatgccc tgctccatcg cgatgccgcg tcggcggatg cgctggacca gcgtcgacgc
     1501 cggcgcctga agccagacca cgaggtcggg ctcgcgcacc tgcggcgcga gctgggcatg
     1561 catctgccgg tacagccggt gctcgtcgtc gctcaggttg acccgggcga agatcgcatc
     1621 cttggcgaac aagaaatcgg tgaccaccgc gctcgcgaag acgctcggct gggccagcgc
     1681 ctgcatctgg cgcaggcgct gaaacaggaa aaagagctgg gtctggaacg catacccggg
     1741 catgtcggca tagaagcgct gcaggaacgg gttctcggcc ggctgctcga gcatcagttc
     1801 ggccccgaga tggcgggcca ggcggaccgc gagcgagctc ttgccggcgc cgatcgggcc
     1861 ttcgacggcg atgtggcgaa agcgacgcag ggctgagttc atgatctcag agtttatcga
     1921 tgcgctgccc ggtgacggcg ggaagcaggt tggcgacgcg gccgagcccc ggaagaacga
     1981 gtccgggcgc aatctcggcg agcggcaaga gcacgaaggc gcgttcatgc aagcgcgggt
     2041 gcggcaggat caactccggc ccttcgaggc gcagatcgcc gtaggcga
//
LOCUS       DASVHM010000489         4144 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_828263, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000489 DASVHM010000000
VERSION     DASVHM010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4144
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_828263"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..404)
                     /locus_tag="VF308_09210"
     CDS             complement(<1..404)
                     /locus_tag="VF308_09210"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008906353.1"
                     /note="Catalyzes the transfer of electrons from NADH to
                     quinone; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEX7436874.1"
                     /translation="MPLLSIAIWLPIVAGVLLLAFGRDDRAEAVRWAALIAAVASFAV
                     TIPLVTGFNVGTAAMQFAEKHAWIARFNVWYTLGVDGLSVWFVLLTAFITVIVVISAW
                     QVIEERVHQYMGAFLILSGLLVGVFCAMDGLL"
     gene            complement(429..2519)
                     /gene="nuoL"
                     /locus_tag="VF308_09215"
     CDS             complement(429..2519)
                     /gene="nuoL"
                     /locus_tag="VF308_09215"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEX7436875.1"
                     /translation="MATTLSPALLTVVPMAPLVGALVAGLFGKQIGRAGAHTVTILGV
                     LISFLISAWVLYAVAVDGARFNATIYEWMRVGPLKMEIGFLIDGLTAMMMAVVTFVSL
                     MVHVYTIGYMADDPGYQRFFSYISLFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIG
                     FWFTRTSAIFAGMKAFIVNRVGDFGFILGIGLVVAFAGTLDYRDAFAKGGELAQLAFP
                     ASDWRLITVICICLFIGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMV
                     ARMSPLFELSDVALSVVLVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTVALG
                     ASAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLVG
                     SLALIGAPFFAGFYSKDSIIEAVHESHLAGAGFAYFAVLIGVFVTAFYSFRMYFLVFH
                     GPERFRDKPFPPQAHDDHAHDEAEGHGADAHATHAESDPHASDAHAAPPHESPAVVTW
                     PLIALAIPSVVIGFLTIGPMLFGDFFKDSIAVVAEQHPAMEELARAFHGPAAMAIHSL
                     TGPIFWLALAGVVVAWFFYLRRPDIPAAIQRRFSFVYRVLDNKYYFDWFNENVLARGA
                     RLLGNGLWKGGDVGVIDGILIDGSARTIGGVAALSRRLQSGYLYWYALVMIVGVIGLM
                     TWQLWPFLGNMIGR"
     gene            complement(2526..2843)
                     /gene="nuoK"
                     /locus_tag="VF308_09220"
     CDS             complement(2526..2843)
                     /gene="nuoK"
                     /locus_tag="VF308_09220"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011463804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEX7436876.1"
                     /translation="MTLGPVTLGHYLSVGAILFALSVIGIFLNRKNLIVLLMAIELML
                     LAVNLNFVAFSYYLGDMAGQVFVFFILTVAAAESAIGLAILVVLFRTRSTIAVDELDT
                     LKG"
     gene            complement(2840..3487)
                     /locus_tag="VF308_09225"
     CDS             complement(2840..3487)
                     /locus_tag="VF308_09225"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013901967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEX7436877.1"
                     /translation="MDTNTALFYVFSAVLLLAAFRVITARSPVYAALFLVLAFFSAAC
                     VWILLHAEFLAIALVLVYVGAVMVLFLFVVMMLDVDVGSLREGFWRHFPVAAIVGVVI
                     ALEMAAVLLPGFRLTDAPATPAAALKLGNTKLLGIEVYTRYLYPLQIAAVLLLVAIIA
                     AISLTLRARKDSKHIDPSEQIKAKKADRMRIVSMKPESAPRDVASDAAKPVGDRR"
     gene            complement(3546..4043)
                     /gene="nuoI"
                     /locus_tag="VF308_09230"
     CDS             complement(3546..4043)
                     /gene="nuoI"
                     /locus_tag="VF308_09230"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEX7436878.1"
                     /translation="MAQATPIKDFLSSFMLGELFKGMRLTGRHFLSKKMTIQYPEEKT
                     PLSPRFRGLHALRRYENGEERCIACKLCEAVCPALAITIESEVRDDGSRRTTRYDIDL
                     TKCIFCGFCEESCPVDSIVETHILEYHGEKRGDLYFTKDMLLAVGDRYEKEIAAAKEA
                     DAKYR"
BASE COUNT          807 a         1282 c         1465 g          590 t
ORIGIN      
        1 aacagcagcc cgtccatcgc gcagaagacg ccgacgagca gccccgagag gatcaggaat
       61 gcgcccatgt actggtggac gcgctcctcg atgacctgcc acgcggagat cacgacgatg
      121 acggtgatga acgccgtcag cagcacgaac cagaccgaga ggccgtcgac gccgagcgtg
      181 taccagacgt tgaaacgcgc gatccaggcg tgcttctcgg cgaactgcat cgccgcggtg
      241 ccgacgttga agccggtgac gagtgggatc gtcacggcga agctcgcgac cgcggcgatc
      301 agcgcggccc agcgcaccgc ctcggcgcgg tcgtcgcggc cgaaggcgag gagcagcacg
      361 cccgcgacga tgggcagcca gatggcgatg ctgagaaggg gcatgttctt gttgtcgtcg
      421 ccgcccgatc agcggccgat catgtttccg aggaacggcc agagctgcca ggtcatgagg
      481 ccgatcacgc cgacgatcat gaccagcgcg taccagtaca gatagccgct ctgcaggcgc
      541 cgactgagcg cggcgacgcc accgatcgtg cgtgccgagc cgtcgatgag gatgccgtcg
      601 atgacaccga catcgccacc cttccacagg ccgttgccga gcaggcgcgc gccgcgcgcg
      661 agaacgttct cgttgaacca gtcgaagtag tacttgttgt cgagcacgcg gtagacgaac
      721 gagaagcggc gctggatcgc cgccgggatg tcgggccggc gcaggtagaa gaaccaggcg
      781 acgacgacgc cggcgagcgc gagccagaag atcggcccgg tgagcgaatg gatcgccatc
      841 gcggccgggc cgtggaaggc acgcgccagc tcttccatcg ccgggtgctg ctcggcgacg
      901 acggcgatgg agtccttgaa gaagtcgccg aacagcatcg gcccgatcgt caggaagccg
      961 atcacgaccg acgggatcgc gagcgcgatc agcggccagg tgacgaccgc tggcgactcg
     1021 tgcggcggcg ccgcatgcgc gtcggaggcg tgcgggtcgg actcggcatg cgtcgcgtgc
     1081 gcgtcggcgc cgtggccctc tgcctcgtcg tgcgcatggt cgtcgtgcgc ctggggcggg
     1141 aacggcttgt cgcggaagcg ctccggtccg tggaagacca ggaagtacat ccggaacgag
     1201 tagaacgcag tgacgaagac gccgatgagg accgcgaagt aggcgaagcc ggcgccggcc
     1261 aggtggctct cgtgcaccgc ctcgatgatc gagtccttcg agtagaagcc ggcgaagaac
     1321 ggcgcgccga tcagcgcgag cgagccgacc agcgacgtga tccacgtgat cggcatgtac
     1381 ttcctcaggc ctcccatgtt gcggatgtcc tggtcgtggt gcatgccgat gatcaccgag
     1441 ccggcggcga ggaagagcag cgccttgaag aacgcgtgcg tcatcaggtg gaacaccgcc
     1501 accgagtacg ccgaggcgcc gagcgcgacc gtcatgtagc cgagctgcga cagcgtcgag
     1561 taggcgacca cgcgcttgat gtcgttctgg atgacgccga ggaagcccat gaagagcgcc
     1621 gtgatcgcgc cgatgacgag cacgaccgag agtgcgacgt ccgacagctc gaacagcggc
     1681 gacatccgtg cgaccatgaa gatgccggcg gtcaccatcg tcgccgcgtg gatcagcgcc
     1741 gagatcggcg tcgggccttc catcgaatcg ggcagccaga cgtggagcgg gaactgcgcg
     1801 ctcttgccca tcgcgccgat gaagaggcag atgcagatca cggtgatgag gcgccagtcg
     1861 ctcgccggga aggcgagctg cgcaagctcg ccgcccttgg cgaacgcgtc gcggtagtcg
     1921 agcgttccgg cgaaagcgac gaccaggccg atgccgagga tgaagccgaa gtccccgacc
     1981 cggttgacga tgaacgcctt catgccggcg aagatcgcgg acgtacgcgt gaaccagaag
     2041 ccgatcagca ggtacgagac gaggccgacc gcctcccagc cgaagaagag ctggaggaag
     2101 ttgttgctca tgacgagcat gagcatcgag aacgtgaaca gcgagatgta gctgaagaag
     2161 cgctggtagc ccgggtcgtc ggccatgtag ccgatcgtgt agacgtgcac catcagcgag
     2221 acgaaggtga cgacggccat catcatcgcc gtcaggccgt cgatgaggaa gccgatctcc
     2281 atcttgagcg ggccgacgcg catccattcg tagatggtcg cgttgaaacg ggcgccgtcg
     2341 acggcgacgg cgtacagcac ccaggccgag atcaggaacg agatcaggac gccgaggatc
     2401 gtgaccgtgt gcgcgccggc tcggccgatc tgcttgccga agagcccagc gacgagcgcg
     2461 ccgacgagcg gcgccatcgg cacgaccgtc agcagcgcgg gcgagagggt ggtggccatc
     2521 gcgccctagc ccttgagcgt gtcgagctcg tcgacggcga tcgtcgagcg ggttcggaac
     2581 aggacgacca ggatcgcgag gccgatcgcc gactcagccg cggcgacggt gaggatgaag
     2641 aagacgaaca cctggccggc catgtcgccg aggtagtacg agaaggcgac gaagttgagg
     2701 ttgacggcga gcagcatcag ctcgatcgcc atcagcagga cgatcaggtt ctttcggttg
     2761 aggaagatgc cgatcaccga gagcgcgaac aggatcgcgc cgaccgagag gtagtggccg
     2821 agcgtgacgg gacccagggt catcgccgat cccccaccgg cttggcggcg tcgctggcga
     2881 cgtcgcgcgg cgcgctctcg ggcttcatcg aaacgattcg catccggtcg gccttcttgg
     2941 ccttgatctg ctcggacggg tcgatgtgct tggagtcctt gcgcgcgcgc agggtcagcg
     3001 agatcgcggc gatgatcgcc acgagcagca gcaccgccgc gatctgcagc gggtagaggt
     3061 agcgcgtgta gacctcgatc ccgagcagct tggtgttgcc gagcttgagc gccgccgcgg
     3121 gcgtggcagg cgcgtcggtg aggcggaacc cgggcaggag cacggccgcc atctcgaggg
     3181 cgatgacgac gccgacgatc gccgcgaccg gaaagtggcg ccagaagcct tccctcagcg
     3241 acccgacgtc gacgtcgagc atcatgacga cgaacaggaa cagcaccatc accgcgccga
     3301 cgtagaccag cacgagcgcg atcgccagga actcggcgtg cagcaggatc cagacgcagg
     3361 cggcgctgaa gaaggcgagc accaggaaga gcgcggcata gaccgggctc ctcgccgtga
     3421 tgacgcgaaa cgccgccagt agcagcacgg cggagaacac gtagaagagc gcggtgttgg
     3481 tgtccatggt tgggcaggcg tggcgtcacg ccggctcgcc gctcagcgag cggcaggccg
     3541 acaggtcagc ggtacttcgc gtccgcctcc ttcgccgcgg cgatctcttt ttcgtagcgg
     3601 tcgccgacgg cgagcagcat gtccttggtg aagtagaggt cgccgcgctt ctcgccgtgg
     3661 tactcgagga tgtgcgtctc gacgatcgaa tcgaccgggc agctctcctc gcagaagccg
     3721 cagaagatgc acttggtgag gtcgatgtcg tagcgcgtcg tccggcgcga gccgtcgtcg
     3781 cggacctcgc tctcgatcgt gatcgccagc gccgggcaga ccgcctcgca cagcttgcag
     3841 gcgatgcagc gctcctcgcc attctcgtag cggcgcagcg cgtgcaggcc gcgaaagcgc
     3901 ggcgagagcg gcgtcttctc ctccgggtac tggatcgtca tcttcttcga gaggaagtga
     3961 cggccggtga gccgcatgcc cttgaagagc tcgccgagca tgaagctcga gagaaagtcc
     4021 ttgatcggtg tggcttgagc catggcgggc gctatttcca gaggttccag ggcgactgga
     4081 tcacgaggcc gacgacgacg agccagacca gcgtcaccgg aatgaagatc ttccagccga
     4141 gtcg
//
LOCUS       DASVHM010000490         3806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1045561, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000490 DASVHM010000000
VERSION     DASVHM010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3806
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1045561"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(14..1042)
                     /locus_tag="VF308_09235"
     CDS             complement(14..1042)
                     /locus_tag="VF308_09235"
                     /inference="COORDINATES: protein motif:HMM:NF015724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HEX7436879.1"
                     /translation="MSLDRQIMRRVAAIVVLGAVPLAAGAQELGRGGSMATGGAGPNG
                     AINANSQLERCDAPKGTLAVVEPQSQVLGNLQRYGLGSPTSVLRMLVQQSNCFQVVER
                     GVAMGNMMQERALARSGELQSGSNIGKGQMAAADFIVNPSVVFSENNAGGVGGALGGL
                     LGGRAGALAGGIAGGVKFKQAQTSMLLVDARSGIQVAAAEGSAEKADFALGGALFGGG
                     GGAAAGGYSNTNEGKMITASVVDNWNNIVRSIRGNASLIQGRGMASEANAAGSVRANA
                     AAAGDVMVPKINGVKVLRLPQDGAGEVQSLGRNDEVLMLGEERNGYAKVTAPRGDGWV
                     KAILLRKQ"
     gene            complement(1205..1933)
                     /locus_tag="VF308_09240"
     CDS             complement(1205..1933)
                     /locus_tag="VF308_09240"
                     /inference="COORDINATES: protein motif:HMM:NF006118.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7436880.1"
                     /translation="MDIKNATALVTGANRGLGRELVNQLLSAGALKVYAAAREAAAVQ
                     DLVRAHPGRVEAVSLDILRPEQIAAAAARCADVNLLVNNAGINRGRGLIAAPSLEDAQ
                     AEIATNYLGTLAMCRAFAPRLGKGAIVNVLSILAKVTLPAMGSLCASKAAGLRMTEGV
                     RAELAAQGTLVLALMTGAIDTDMSRDFQGPKSSPAEVAQAVLAGLERGDEEVYVGDMP
                     GWINGALATDPKGLERELAKYLPQ"
     gene            complement(1945..2796)
                     /locus_tag="VF308_09245"
     CDS             complement(1945..2796)
                     /locus_tag="VF308_09245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017524566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7436881.1"
                     /translation="MAEPLLQVQRLSLALPDLALRPFFGKAALRAILHDIDLTVDAGA
                     CVALVGESGSGKTTLARTVLRLHEPQRGDIVFAGREITHMTEPELRPLRARMQMIFQD
                     PLSALNPRRRIGEIVIQPLLSYGRLGPAPSAAVRTARAHELLEQVSLPPGMAARYPHE
                     LSGGQRQRVGIARAIALQPDLIVADEIVSGLDVSTQARILLLLRALRERLGMGMIFVT
                     HDLSVVRVLCDRVAVMQEGRIVEQGTTQDVFERPQHAYTRTLLEAVPLPEIDDTWLSG
                     RAANATP"
     gene            complement(2789..3712)
                     /locus_tag="VF308_09250"
     CDS             complement(2789..3712)
                     /locus_tag="VF308_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7436882.1"
                     /translation="MNAPVCLSVDGLHVALRASRGRVATLIVRGVDLAVAAGEIHALV
                     GESGAGKSTVGRAVLGITPPGMDVVAVSIAFLGMDWLRMSPAQRRVHLGRDIALIPQD
                     PLTALNPGHTIGAQLAEVLRLHLHHAADQARSRSLELLESVQIRTPATVLRQYPHELS
                     GGMRQRVLIAMAFACKPKLIVADEPTTALDVTVQREVLRLLRALQRDEGAAVLFITHN
                     LGLVAKLCDRVSVIHSGRIVEHGDVRTVLEAPRSAYTRALFAATPRYDRPADALLPTD
                     DAVTDALWRDAQAYDRTWWPAHPAAARGARG"
BASE COUNT          525 a         1348 c         1351 g          582 t
ORIGIN      
        1 cggaactctt cggtcactgc ttgcgcagca ggatggcctt gacccagccg tctccgcgcg
       61 gtgcggtcac cttggcgtag ccgttgcgct cctcgccgag catcagcact tcgtcgttgc
      121 ggcccaggct ttgcacttcg ccggcgccat cctgcggcag gcgcagcacc ttcacgccgt
      181 tgatcttggg caccatcacg tcgcccgccg ccgcggcgtt ggccctcacg ctccccgccg
      241 cgttggcctc cgacgccata ccgcgaccct ggatcaggct cgcgttgccg cggatcgaac
      301 gcacgatgtt gttccagttg tcgacgaccg aggcggtgat catcttgcct tcgttggtgt
      361 tgctgtagcc gcccgctgcg gccccgccgc caccgccgaa gagcgcgccg ccgagcgcga
      421 agtcggcctt ctcggcgctg ccttcggcgg ccgcgacctg gatgcccgaa cgcgcatcga
      481 cgagcagcat gctggtctgg gcctgcttga acttgacccc gcccgcgatg ccgccggcga
      541 gcgcgccggc ccgcccgccg agcaagccgc cgagcgcgcc gccgacgccg cccgcgttgt
      601 tctcgctgaa cacgacgctc gggttgacga tgaaatcggc ggcggccatc tggcccttgc
      661 cgatgttcga gccgctctgc agctcgcccg agcgcgccag cgcgcgctcc tgcatcatgt
      721 tgcccatcgc cacaccgcgc tcgacgacct ggaagcagtt cgactgttgc accagcatgc
      781 gcagcacgct ggtcggcgac cccaggccgt agcgctgcag gttgccgagc acctggctct
      841 gcggttcgac gactgcgagc gtgcccttgg gggcgtcgca gcgctcgagc tgcgaattcg
      901 cgttgatcgc gccgttcggg ccggcgccgc cggtcgccat cgagcctccg cggccgagct
      961 cctgtgcgcc ggcggcgagc ggtacggcgc cgagcacgac gatggcagcg actcgccgca
     1021 tgatttgacg atccaatgac atggcgttct ccggtgagcg gcggggaggg acggcgccgg
     1081 gacgcatcgc gccgcggcag ccggcatttt agaggggcca cccgtggctt gtgggcccat
     1141 ccgtccggat tcatcggcac ccgcatggcc gggcgcaccg gacacataca tgccgggcgc
     1201 accgttactg cggcagatac ttcgccagct cgcgctccag gcccttcggg tccgtcgcca
     1261 gcgcaccgtt gatccacccc ggcatgtcgc cgacatagac ctcttcgtcc ccgcgctcca
     1321 gccccgccag cacggcttgc gccacttccg ccggcgacga cttcggaccc tggaagtcgc
     1381 ggctcatgtc ggtgtcgatc gcgccggtca tcagcgccag caccagcgtg ccctgggccg
     1441 cgagttcggc gcgcacgccc tcggtcatgc gcaagccggc cgccttcgag gcacacagcg
     1501 agcccatcgc cggcaaggtc accttggcca ggatcgacag cacgttgacg atcgcgcctt
     1561 tgccgagtcg cggcgcgaaa gcccggcaca tcgcgagcgt gccgagatag ttcgtggcga
     1621 tctcggcctg ggcatcctcg agcgacggcg cggcgatgag accgcggccg cggttgatgc
     1681 cggcgttgtt gaccagcagg ttcacgtcgg cgcagcgtgc cgccgccgcc gcgatctgtt
     1741 cgggccgcag gatgtcgagg ctcacggcct cgactcggcc ggggtgggcc cgcaccaggt
     1801 cctgcaccgc cgccgcctcg cgcgcggcgg cgtagacctt gagcgcgccg gcgctcagca
     1861 gctgattgac gagttctcgt cccaggccgc ggttggcgcc tgtgaccagc gcggtggcgt
     1921 tcttgatgtc catctcggtt tccttcaagg agttgcgttg gcggcgcggc ccgacaacca
     1981 agtgtcgtcg atctcgggca gcggaacggc ttcgagcaag gtgcgcgtgt acgcgtgctg
     2041 cgggcgttcg aacacgtcct gcgtcgtccc ctgctcgacg atgcggcctt cctgcatcac
     2101 cgcgacacgg tcgcatagca cgcgaaccac cgacaggtcg tgggtgacga agatcatgcc
     2161 catgccgagg cgctcgcgca acgcgcgcag cagcagcagg atccgggcct gggtcgacac
     2221 gtcgagtccg gagacgatct cgtcggcgac gatcaggtcg ggctggagcg cgatcgcgcg
     2281 ggcgatgccg acgcgctggc gctggccgcc cgagagttcg tgcggatagc gcgcggccat
     2341 gccgggcggc aggctgacct gttcgagcag ttcatgcgcg cgtgccgtgc gcacggcggc
     2401 gctcggtgcc gggccgagcc ggccgtagct gagcagcggt tggatgacga tctcgccgat
     2461 gcggcggcgc gggttgagcg ccgaaagcgg gtcctgaaag atcatctgca tgcgtgcgcg
     2521 cagcggccgc agttcgggct cggtcatgtg cgtgatctcg cgcccggcaa agacgatgtc
     2581 gccgcgctgc ggttcgtgca ggcgcagcac cgtgcgtgcc agcgtggtct tgccggagcc
     2641 cgactcgccg accagcgcga cgcatgcgcc ggcatcgacg gtgaggtcga tgtcgtggag
     2701 gatcgcgcgc agcgctgcct tgccgaagaa cggccgcagc gccaggtcgg gcaaggccag
     2761 gctcaggcgc tgcacctgca gcaggggctc agccacgggc gcctcgcgcg gcggccgggt
     2821 gcgccggcca ccaggtccgg tcataggcct gcgcgtcgcg ccacagcgca tcggtgaccg
     2881 cgtcatcggt cggcagcaag gcgtcggccg gccggtcgta gcgcggcgtg gcggcgaaga
     2941 gggcccgggt gtaggcgctg cgtggcgcct cgagcaccgt gcgcacgtcg ccgtgctcga
     3001 cgatgcggcc ggagtggatc acgctcaccc gatcgcagag cttggcgacc agcccgaggt
     3061 tgtgggtgat gaacagcacc gccgcgcctt cgtcgcgttg cagcgcgcgc agcagtcgca
     3121 gcacctcgcg ctgcaccgtc acgtcgaggg ccgtcgtcgg ctcgtcggcg acgatgagct
     3181 tgggcttgca cgcgaatgcc atcgcgatca gcacgcgctg gcgcatgccg ccggagagtt
     3241 cgtgcgggta ctggcgcagc accgtcgcag gcgttcggat ctgcaccgac tccagcagct
     3301 cgaggctgcg cgaccgggcc tgatcggcag cgtggtgcag atgcaggcgc aggacttcag
     3361 cgagttgcgc accgatcgtg tggccgggat tgagcgcggt gagtgggtcc tgcgggatga
     3421 gcgcgatgtc gcggcccaga tgaacgcggc gctgcgccgg gctcatgcgc aaccagtcca
     3481 tgccgaggaa ggcgatgctg acggccacca cgtccatccc gggcggcgtg atgccgagca
     3541 ccgcgcggcc gaccgtgctc ttgcccgcac cggattcgcc gacgagcgcg tggatctcgc
     3601 ccgccgcgac cgccaggtcg acgccgcgca cgatcagcgt cgcgacgcgc ccgcggctcg
     3661 cgcgcagcgc gacgtgcagg ccgtcgaccg agaggcagac cggtgcgttc atcggcgcag
     3721 cagcgggtcg agcgactcgc gcaggccgtc gcccagcgca ttgcaggcga gcacggtggt
     3781 cgcgatcgcc gcgatcggca ggccga
//
LOCUS       DASVHM010000491         2454 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1045628, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000491 DASVHM010000000
VERSION     DASVHM010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1045628"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..238
                     /locus_tag="VF308_09255"
     CDS             <1..238
                     /locus_tag="VF308_09255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005431540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEX7436883.1"
                     /translation="DEVQGGLTEDNALFEARRCLSCGNCFECDNCYGVCPDNAVIKLG
                     PGNRFDFNYDYCKGCGICVAECPCGAIDMIPEDA"
     gene            complement(260..1003)
                     /locus_tag="VF308_09260"
     CDS             complement(260..1003)
                     /locus_tag="VF308_09260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011804526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX7436884.1"
                     /translation="MDEIVFRPLHTVACKVRCSSCNLREICLPVGLTREEMAHVDSIM
                     VVGQRKVARGEALVHAGDRFDSVFAVRTGFFKSVIISSPGRQQITAFQTSGELIGLGG
                     IDTGRHEVDVVALEDSQVCVIPYGELEALGRAVPSLQRQFHRHLSREIAADHEAMMQL
                     GSMHAEERVAAFLLNLVHRLETRGFSSTSVLLRMSRDEIGSFLGLKLETVSRTLSKFQ
                     TDGLLFVRQRQIQITDPVGLKQVLEPAAA"
     gene            1105..>2454
                     /locus_tag="VF308_09265"
     CDS             1105..>2454
                     /locus_tag="VF308_09265"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX7436885.1"
                     /translation="MLPAAHRQLHDELAAFIPAARLVTDPLRLLAWGTDASFYRLVPK
                     LVVVVEDEDEVRRLLRSCARLDVPVTFRAAGTSLSGQAVSDSVLVMLGDGWRRVSVAA
                     DAGEVTLQPGVIGAAANRRLAPLGRKIGPDPASIDAAMIGGIAANNASGMCCGTAQNS
                     YHTLAGMRIVLADGSVLDSRDPASRAAFARDRAELAQGLAELGRATRADPTLAARIRH
                     KFRLKNTTGYSLNALIDFSDPVDILAHLMIGSEGTLGFISEITYFTVEEHAHKASALV
                     LFDRLETACSAVTRLKQTPVAAVELLDRASLRSVQGKPGIPGSLSSLPEDGAALLVET
                     RAGTAAALAIKIDLISAQLSSLPPATPLHFTTDAAESAALWNVRKGMFPAIGAMRPTG
                     TTVIIEDVAFPVERLAEATLALQQLLRRHGYDEAIIYGHALEGNLHFVFTQDFGRAAE
                     "
BASE COUNT          381 a          894 c          818 g          361 t
ORIGIN      
        1 cgacgaggtc cagggcggcc tcaccgagga caacgcgctg ttcgaggcgc gccgctgcct
       61 cagctgcggc aactgcttcg agtgcgacaa ctgctacggc gtctgcccgg acaacgccgt
      121 gatcaagctc ggccccggca atcgcttcga cttcaactac gactactgca agggctgcgg
      181 catctgcgtc gccgagtgcc cgtgcggcgc gatcgacatg atcccggagg acgcgtagcg
      241 cgccccgtcg cgccggccct caggcggcgg cgggctcgag cacctgcttc aggccgaccg
      301 gatcggtgat ctggatctgc cgctggcgca cgaacagcag gccgtcggtc tggaacttcg
      361 acaaggtccg gctgaccgtc tcgagcttga ggccaaggaa gctgccgatc tcgtcgcggc
      421 tcatccgcag cagcaccgag gtcgacgaaa agccgcgcgt ctcgagtcga tggacgaggt
      481 tgagcaggaa cgcggcgacg cgctcctcgg cgtgcatgct gcccagctgc atcatcgctt
      541 cgtggtcggc ggcgatctcg cggctgaggt gccggtggaa ctgccgttgc agcgaaggca
      601 ccgcccggcc gagcgcctcg agctcgccgt agggaatcac gcagacctgc gaatcctcga
      661 gagcgaccac gtcgacctcg tggcgaccgg tgtcgatgcc gccgaggccg atcaattcgc
      721 cgctcgtctg gaaggccgtg atctgctggc ggcccgggct cgagatgatg accgacttga
      781 agaagccggt ccgcacggcg aagaccgagt cgaagcggtc gccggcgtgg accagcgcct
      841 cgccgcgcgc caccttgcgc tggccgacca ccatgatgct gtcgacatgc gccatctctt
      901 cgcgggtcag gccgacgggc aggcagatct cgcgcaggtt gcagctcgag cagcgcacct
      961 tgcaggcgac cgtgtgaagg ggtcgaaaga cgatctcatc catcggcgaa ccgcgtcgtc
     1021 aggaccccga aagtctatct gacgccccgc cggtcgtgat ctgcatcaag tcgggggcac
     1081 cgcgccggcc tagagtggcc cgccatgctg cccgcagccc accgccagtt gcacgacgag
     1141 ctggccgcgt tcatcccggc cgcacgcctc gtcaccgacc cgctccgcct gctcgcctgg
     1201 ggcaccgacg ccagcttcta ccgcctggtg ccgaagctgg tcgtcgtcgt cgaggacgag
     1261 gacgaggtgc gccgcctgct tcgctcctgc gcccgcctcg acgtcccggt cacctttcgc
     1321 gccgccggaa cgagcctctc gggccaggcg gtgagtgact ccgtgctggt gatgctcggc
     1381 gacggctggc gccgggtctc ggtcgccgcg gatgctggcg aggtgacgct gcagcccggc
     1441 gtcatcggcg ccgccgcgaa ccggaggctg gcgccgcttg gccgcaagat cgggcccgat
     1501 ccggcgtcga tcgacgccgc catgatcggc ggcatcgccg ccaacaacgc cagcggcatg
     1561 tgctgcggca cggcgcagaa cagctatcac acgctcgccg ggatgcggat cgtgctcgcc
     1621 gacggcagcg tgctcgacag ccgcgatccg gcgagtcgcg ccgcgttcgc gcgcgatcgc
     1681 gccgagctcg cgcaaggcct ggccgagctc ggccgggcga cccgtgccga cccgaccctg
     1741 gcggctcgga tccgccacaa gttcaggctc aagaacacca ccggctacag cctcaacgcg
     1801 ctgatcgatt tcagcgaccc ggtcgacatc ctcgcccacc tcatgatcgg ctcggaaggc
     1861 acgctcggct tcatcagcga gatcacctac ttcaccgtcg aggagcacgc gcacaaggcg
     1921 agcgcgctgg tcctcttcga ccgcctcgag accgcctgca gcgcggtgac gcggctcaag
     1981 cagacgccgg tcgcggcggt cgagctgctc gaccgcgcgt cgctgcgctc ggtacagggc
     2041 aaacccggca ttcccgggtc gcttagcagc cttcccgaag acggcgcggc gctcctcgtc
     2101 gagacccggg ccggcaccgc ggccgcgctc gccatcaaga tcgatctgat ctcggcccag
     2161 ctctcgtcgc tgccgccggc gacgccgctg catttcacga ccgacgccgc cgaatcggcc
     2221 gcgctgtgga acgtccgcaa gggcatgttc ccggccatcg gcgcgatgcg gccgaccggc
     2281 accacggtga tcatcgagga cgtcgcgttc ccggtcgagc gcctcgccga ggcgacgctc
     2341 gcgctgcaac agctgctgcg ccgccacggc tacgacgagg cgatcatcta cgggcacgcg
     2401 ctcgagggca atctgcactt cgtcttcacg caggacttcg gccgcgccgc cgag
//
LOCUS       DASVHM010000492         2923 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_34407, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000492 DASVHM010000000
VERSION     DASVHM010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2923
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34407"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..260
                     /locus_tag="VF308_09270"
     CDS             <1..260
                     /locus_tag="VF308_09270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013124307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HEX7436886.1"
                     /translation="LLQYDIYHAQRTEGELAATMSRHLAKIGHMQLADNPGRNEPGTG
                     EINYPFLFAHMDRIGYKGHVGCEYKPAGNTEAGLGWFKAIR"
     gene            312..1220
                     /gene="glxR"
                     /locus_tag="VF308_09275"
     CDS             312..1220
                     /gene="glxR"
                     /locus_tag="VF308_09275"
                     /EC_number="1.1.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006297513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008679 - 2-hydroxy-3-oxopropionate
                     reductase activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046487 - glyoxylate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-oxopropionate reductase"
                     /protein_id="HEX7436887.1"
                     /translation="MTTQVLKLGFIGLGIMGTPMAGHLAKAGHQLFVTTRSKVPPGVT
                     EAGATVCKDAKSVAEQADIVFIMVPDTPDVQKVLFGENGVASGLSKGKTVVDMSSISP
                     IETKEFAQRINALGCEYLDAPVSGGEVGAKAASLTIMVGATEAGFAKVKPLFELMGKN
                     ITLVGGNGDGQTCKVANQIIVALNIAAVGEALVFASKAGADPAKVRQALLGGFAASRI
                     LEVHGERMIKRTFNPGFRIGLHQKDLSLALAGARALGVALPQTAGAAQLMQVCAAHGM
                     QDLDHSATVRALELMANHTVAKDPVA"
     gene            1251..2564
                     /locus_tag="VF308_09280"
     CDS             1251..2564
                     /locus_tag="VF308_09280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEX7436888.1"
                     /translation="MNLPSPQRDPRGFLRALFDAAVAQAVPGAQTRAFLPAAPKGRTL
                     VLGAGKAGGSMAAAVEALWPADAPMSGLVVTRYDYVPPDFKALQRDGRARIEVVEAAH
                     PVPDAAGREAAARIAQLARGLGQDDLVLCLISGGASALLAMPAEGISLGEKQAINKAL
                     LRSGAAIGEMNCVRKHLSAIKGGRLAAMCAPARVVTLLISDVPGDAPEVIGSGPTVPD
                     PSTCAQALAILGRYAIEIPAAARAGLESGAFETPKPGDRVFEGNEVQMIATPLQSLEA
                     AAVCAREAGIAVHVLSDEMEGESREVGKVHAALARHIARHGQPFAKPCVVLSGGETTV
                     TVKNKGGRGGRATEFLLGSALALQGEPGVWLLAGDTDGIDGVEDNAGAIVTPDTLTRA
                     AARGLKAQDSLDRNDAYNFFLPLGDLVVTGPTFTNVNDFRALLIA"
     gene            2580..>2923
                     /locus_tag="VF308_09285"
     CDS             2580..>2923
                     /locus_tag="VF308_09285"
                     /inference="COORDINATES: protein motif:HMM:NF014653.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ldh family oxidoreductase"
                     /protein_id="HEX7436889.1"
                     /translation="MPETQIFHADALTAAIYAIVKAGGSSEREAGMVATNLVEANLRG
                     HDSHGVGMIPRYIEALKEGGLAVDEHVAITLDGGATLSLDGRHGYGQVIGHEAMELGA
                     ERARRHGVCVVGL"
BASE COUNT          476 a         1021 c         1021 g          405 t
ORIGIN      
        1 tgctgctgca gtacgacatc tatcatgcgc agcgcaccga aggcgaactc gcggcgacga
       61 tgagcaggca ccttgcgaag atcggccaca tgcagctcgc cgacaatccg gggcgcaacg
      121 agccggggac gggcgagatc aactacccgt tcctgttcgc gcacatggac cggatcggct
      181 acaagggcca cgtcggctgc gaatacaagc cggccggcaa caccgaggcc gggttgggct
      241 ggttcaaagc gatacgctga ggctctcgtc atcaacggac aatgacgtcg gaacaagcga
      301 tacccatcat catgactact caagttctca agctcggctt catcggactc ggcatcatgg
      361 gcacgccgat ggcgggccac ctcgcgaagg ccgggcacca gctcttcgtc acgacgcgca
      421 gcaaggtgcc gcccggggtc accgaggccg gcgcgaccgt ctgcaaggac gcgaagagcg
      481 tcgccgagca ggccgacatc gtcttcatca tggtgcccga cacgcccgac gtgcagaagg
      541 tgctgttcgg cgagaacggc gtcgcttcgg ggctctcgaa gggcaagacg gtcgtcgaca
      601 tgagctcgat ctcgccgatc gagaccaagg aattcgcgca gcgcatcaac gcgctcggct
      661 gcgagtacct cgacgcgccg gtctccggcg gcgaggtcgg cgcgaaggcc gcgtcgctga
      721 ccatcatggt cggcgcgacc gaggccgggt tcgcgaaggt caagccgctc ttcgaactga
      781 tgggcaagaa catcacgctg gtcggcggca acggcgacgg ccagacctgc aaggtcgcga
      841 accagatcat cgtcgcgctc aacatcgccg cggtcggcga ggcgctcgtg ttcgcgtcga
      901 aggccggcgc cgatccggcc aaggtgcgcc aggcgctgtt gggcggcttc gcggcctcgc
      961 gcattctcga ggtgcacggc gaacggatga tcaagcgcac cttcaatccg ggcttccgga
     1021 tcgggctgca ccagaaggac ctgagcctcg cgctcgccgg cgcacgcgcc ctcggcgtcg
     1081 ccttgccgca gacggcgggc gcggcccagc tgatgcaggt ctgcgcggcc cacggcatgc
     1141 aggacctcga ccattccgcg accgtgcgtg cgctcgaact gatggcgaac cacacggtcg
     1201 cgaaggatcc ggtggcttga gcacgcgggt gtccaccggg ccttgcgcgc atgaacctgc
     1261 cgtcaccgca gcgcgacccg cgcggcttcc tgcgcgcctt gttcgacgcg gcggtcgcgc
     1321 aggccgttcc gggcgcgcag acaagggcct ttcttccggc cgcgccgaag ggccgcacgc
     1381 tcgtcctcgg cgccggcaag gccggcgggt cgatggcggc ggcggtcgag gcgctgtggc
     1441 ccgccgatgc gccgatgtcg ggcctcgtcg tcacgcgcta cgactacgtc ccgcccgatt
     1501 tcaaggcgct gcagcgtgac ggccgagcgc gcatcgaggt cgtcgaggcc gcgcacccgg
     1561 ttcccgacgc ggcgggccgc gaggcggctg cgcgcatcgc gcagttggcg cgcggcctcg
     1621 gccaagacga tctggtgctg tgcctgattt cgggcggcgc ctcggcgctg ctcgcgatgc
     1681 cggccgaggg gatctcgctg ggcgagaagc aggccatcaa caaggcgctg ctgcgatccg
     1741 gcgccgcgat cggcgagatg aactgcgtgc gcaagcacct ctcggccatc aagggcgggc
     1801 ggctggccgc gatgtgcgcg ccggcccgcg tcgtgacgct gctgatcagc gacgtgcccg
     1861 gcgatgcgcc ggaagtcatc ggcagcgggc cgactgttcc cgacccgagc acctgcgccc
     1921 aggcgctcgc gatcctcggc cgctacgcca tcgagattcc ggccgctgcg cgcgccggcc
     1981 tggaaagcgg cgccttcgaa acgccgaagc ccggcgaccg ggtgttcgag ggcaacgaag
     2041 tgcagatgat cgccacgccg ctgcagtcgc tcgaggccgc tgccgtgtgc gcgcgcgaag
     2101 ccggcatcgc tgtgcatgtg ctgagcgatg aaatggaagg cgaatcgcgc gaggtcggca
     2161 aggtccacgc cgcgctcgcg cgccacatcg cccgacacgg ccagccgttc gcgaagccgt
     2221 gcgtggtgct gtctggcggc gagacgaccg tgacggtgaa gaacaagggc ggccgcggcg
     2281 ggcgcgccac cgagttcctg ctcggcagcg cgctcgcgct gcagggcgag cccggcgtct
     2341 ggctgctcgc cggcgacacc gacggcatcg acggcgtcga agacaacgcc ggcgcgatcg
     2401 tcacgcccga cacattgacc cgggccgcgg cgcgcggcct gaaggcgcag gattccctcg
     2461 accgcaacga cgcgtacaac ttcttcctgc cgctcggcga cctggtcgtg accgggccga
     2521 ccttcacgaa cgtcaacgac tttcgcgcgc tactcatcgc ctgaggccgt ctccccacca
     2581 tgcccgaaac gcagatattc cacgccgacg cgctcaccgc ggccatctac gccatcgtga
     2641 aggcgggcgg ctcgtccgag cgcgaagccg ggatggtcgc gacgaacctc gtcgaggcca
     2701 acctgcgcgg ccacgactcc cacggcgtcg gcatgatccc gcgctacatc gaggcgctga
     2761 aggaaggtgg cctcgccgtc gacgaacacg tcgcgatcac gctcgacggc ggcgcgacgc
     2821 tgagcctcga cggccggcac ggctacgggc aggtgatcgg ccacgaggcg atggaactcg
     2881 gcgccgagcg cgcccggcgt cacggggtct gcgtcgtcgg cct
//
LOCUS       DASVHM010000493         1862 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_685103, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000493 DASVHM010000000
VERSION     DASVHM010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_685103"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..1480
                     /gene="ccoG"
                     /locus_tag="VF308_09290"
     CDS             53..1480
                     /gene="ccoG"
                     /locus_tag="VF308_09290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006296265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEX7436890.1"
                     /translation="MIPIVAADDSSATLVSLYVSEKKIQARSVHGWFATWRWALVWFT
                     QVLFYGLPWLEWNGRQALLLDLTARRFYIFGMVLHPQDVIYLAGLLIIAAFGLFLFTA
                     VAGRLWCGFACPQTVYTEIFMWVEQRFEGDRQARLKLDAAPWSAAKLAKKGGKQLVWL
                     AIGLWTGFTFVAYFTPAHTLAAEVLSLGIGPWEAFWILFYGFATYGNAGYMREQVCKY
                     MCPYARFQSAMFDRDTLIISYDQARGEPRGSRRRGVEPASVGKGDCIDCTICVQVCPT
                     GIDIRRGLQYECIGCAACIDACDDVMDKMKYPRGLIRYATQNGMQNRWSSKMMWKRAA
                     RPRVLVYSAILLAIAAAFATSLALRSPFKADVVRDRGALARLVEDGRIENVYRVQLMN
                     ATEHVERFHIEVEGLPGATLPAWSDVDIAATEARWVPLSVQLTPQSARTLGPGAHPIQ
                     FRIALVDHADHAIQVREKSTFVVPR"
     gene            1494..1751
                     /locus_tag="VF308_09295"
     CDS             1494..1751
                     /locus_tag="VF308_09295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019700110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen fixation protein FixH"
                     /protein_id="HEX7436891.1"
                     /translation="MQPVTLPIPASTPARPAPAARPWWKFGMVWLVIAGPAAVVVASF
                     ATMVVAFTHADLVLPETPAASVTAPTTPAMLARNHAATPRP"
BASE COUNT          286 a          640 c          620 g          316 t
ORIGIN      
        1 gcgcgccggg gcaacgtcgg tgacccatgc ggccggcccg gccaagccgg cggtgattcc
       61 gatcgtcgcc gccgacgact cgtcggccac gctcgtatcg ctctatgtca gcgaaaaaaa
      121 gatccaggcg cgctcggtgc acggctggtt cgcgacttgg cgctgggccc tagtctggtt
      181 cacgcaggtg ctgttctacg gcctgccctg gctcgaatgg aatggccgcc aggcgctcct
      241 cctcgacctg acggcccggc gcttctacat cttcgggatg gtgctgcacc cgcaggacgt
      301 gatctacctg gcgggcctgc tgatcattgc ggcgttcggg ctcttcctgt tcaccgcggt
      361 ggccgggcgc ctctggtgcg gctttgcctg cccgcagacc gtctacaccg aaatcttcat
      421 gtgggtcgaa cagcgcttcg agggcgatcg ccaggcccgc ctgaaactcg acgcggcgcc
      481 ctggtcggcg gccaagctgg cgaaaaaagg cggcaagcag ctcgtctggc tcgccatcgg
      541 cctgtggacc gggttcacct tcgtcgccta cttcacgccc gcgcacacgc tcgccgcgga
      601 ggttctgagc ctcgggatcg ggccgtggga agccttctgg atcctcttct acggcttcgc
      661 gacctacggc aacgccggct acatgcgcga gcaggtctgc aagtacatgt gcccgtacgc
      721 acgcttccag agcgcgatgt tcgaccgcga cacgctgatc atcagctacg accaggcccg
      781 cggcgagccg cgcggctcgc gccggcgcgg cgtcgaaccg gcctcggtcg gcaaaggcga
      841 ctgcatcgat tgcacgatct gcgtgcaggt ctgcccgacc ggcatcgaca tccggcgcgg
      901 cctgcaatac gaatgcatcg gttgtgccgc ctgcatcgac gcctgcgacg acgtgatgga
      961 caagatgaag tacccgcgtg gcctgatccg ctacgcgacg cagaacggca tgcagaaccg
     1021 ctggtcgagc aagatgatgt ggaagcgggc cgcgcggccg cgggtgctgg tctacagtgc
     1081 gatcctgctc gccatcgccg cggcgttcgc caccagcctc gcgctgcgct ccccgttcaa
     1141 ggcggacgtg gtgcgcgatc gcggcgcgct ggcgcggctg gtcgaggacg gccggatcga
     1201 gaacgtctat cgggtgcaac tgatgaacgc gaccgaacac gtggagcgct tccacatcga
     1261 agtcgagggg ctaccggggg cgaccctgcc ggcatggtcc gacgtggata tcgcggcgac
     1321 ggaggcgcgc tgggttccgc tctcggtcca actgacgccg cagagcgcac gaacgctggg
     1381 ccccggcgcg catccgatcc agtttcgcat cgcgctcgtc gaccacgctg accacgcgat
     1441 ccaagtgcgc gagaaatcga cgttcgtggt cccacgctga aagagaggtt cgcatgcaac
     1501 ccgtaacgct tccgatcccc gcatccacgc cagccagacc ggcccctgcg gctcgcccgt
     1561 ggtggaagtt cggcatggtg tggctggtga tcgccgggcc ggcggccgtc gtcgtcgcga
     1621 gtttcgcgac gatggtggtc gccttcacgc atgccgacct ggtgttgccc gagacaccgg
     1681 ctgcgagcgt gaccgcgccg acgacacccg ccatgctggc ccgcaaccat gcagccacgc
     1741 cgcggccttg acggcgcgag cgccaagccg atgaagcagc gtgccttgcg cattctctgg
     1801 ccggccttcc tgattgccgg cgtgctcgag atgctcgtct tcgcggtggt cgatccgcgc
     1861 ga
//
LOCUS       DASVHM010000494         2965 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_828636, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000494 DASVHM010000000
VERSION     DASVHM010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2965
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_828636"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..752)
                     /locus_tag="VF308_09300"
     CDS             complement(51..752)
                     /locus_tag="VF308_09300"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX7436892.1"
                     /translation="MSSFLSKLSIVGAAVACLAGVPAQAQVTYATDGTTANIPGLTGF
                     ATTGADMTGLNVTATFSNGFSQSLAWGTTGAGAGGVFGTGWALTLSGDSFGGNWLFDF
                     KGIEAQLTRLVLDGSTGLTVLDRSLPSPGTDGSANGLDFSFAGGTCGSCAATATYGGL
                     TSIGAAAAVGDLFQKVTVDFTGGTGPRTDWSFVQDTDNDSRFVPGVPEPETYALLLGG
                     LGFVSWVARRRRQVV"
     gene            complement(841..1896)
                     /locus_tag="VF308_09305"
     CDS             complement(841..1896)
                     /locus_tag="VF308_09305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019653701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEX7436893.1"
                     /translation="MALMDFIKKQFIDIIEWTEDSDGTLAWRYPMEDREIQNGGSLTV
                     RESQVAMFVNEGKVADVFGPGRYTLTTATLPILTYLQNWDKLFKSPFKSDVYFFSTRQ
                     QIDQRWGTSQPVTIRDKDFGAVRLRAFGNYAYRIADPRLFYNEISGTRERYTVSDLDG
                     QLRGLMLQHISDAVGASGTPFLDLAANQVEFAKALQEATAPAFAKLGLKLEMVTMQNI
                     SLPEDLQKILDQKIGMGMVGDMGKFMQYQTAQSIPALAAGAGSGDGGGIVGSAVGLGA
                     GVALGQVMANQLSQGLNAAAPGAPAAAAGAAAATSGVKAEDVMSTLERLGEMKTKGIL
                     TQEEFDAKKAELLKKLV"
     gene            1990..>2965
                     /locus_tag="VF308_09310"
     CDS             1990..>2965
                     /locus_tag="VF308_09310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HEX7436894.1"
                     /translation="MNESTPLKLAVIGAGPVGLALALHAANALPDAEITLFDARPLDK
                     DVAGDPRTLALSLGSVQLLQRLGAWRPESAQPIAEVHVSQDAPSLLGAVSWRFGEPAL
                     TIRAIDEAVTMLGAVMSYGHVVAPLQAAWRETQARAPQRLFNRFGSNVTALKKVDSPR
                     GVEVDSGIAETERFDLAVVAEGGVFATAARSDLVAGARPPALRHDYGQTAWVGIATFA
                     GGDPASTGGVAYERFTRHGPAALLPLRDGRAGLVWCVDSRDDPVKDLDDAQRVAVLNT
                     IFHPRTPRLAAVSPLKAFSLGLSAERTLTDGRTVRIGNAAQTLHPVAGQ"
BASE COUNT          431 a         1032 c         1028 g          474 t
ORIGIN      
        1 tagctaccgg aatcgacaac tccggcgcgg ccgggtcgcc gatcggcggg tcagacgacc
       61 tggcggcggc gccgggcgac ccagctcacg aagccgaggc cgccgagcag caacgcgtac
      121 gtctcgggct cgggaacgcc gggaacgaat cggctgtcgt tgtcggtgtc ctggacgaag
      181 ctccagtccg tgcgcggccc ggtcccgccg gtgaaatcga ccgtgacctt ctggaacagg
      241 tcacccacgg ccgccgcggc accgatcgac gtcaagccgc cgtacgtggc cgtggctgcg
      301 cagctgccgc aggtgcctcc cgcgaaggag aaatcgagcc cgttcgcgga gccgtcggtc
      361 ccggggctcg gcagagaacg gtccaggacc gtcaggccgg tcgatccgtc gagaaccagg
      421 cgggtcagct gggcctcgat ccccttgaag tcgaacagcc agttgccgcc gaaactgtcg
      481 ccgctcaagg tcagcgccca tccggtcccg aacacgccgc cggcacccgc gccggtggtg
      541 ccccaggcca ggctctggct gaagccgttg ctgaacgtcg cggtcacgtt caggccggtc
      601 atgtcggcgc cggtggtggc gaagccggtc aggcccggga tgttggcggt cgtgccgtcg
      661 gtcgcgtacg tcacctgcgc ttgcgccggc acgccggcca ggcaggcgac ggcggcgccg
      721 acgatcgaga gtttcgaaag aaagctgctc atggtgactc ctcactcatc ttgaagacga
      781 gcagtgtgac ccgcaggacg cccggcgtgg atcctccgat cgaggggtcc acgcacaggc
      841 tcagacgagc ttcttgagca gctcggcctt cttggcgtcg aactcttcct gggtgaggat
      901 gcccttggtc ttcatctcgc cgaggcgttc gagcgtgctc atgacgtcct ccgccttgac
      961 gcccgacgtt gccgccgccg cgccggcagc ggcggctggc gctcccggcg cggcggcgtt
     1021 cagcccctgg ctgagctggt tggccatgac ctgcccgagg gcgacgccgg cgccgaggcc
     1081 gaccgcgctg ccgacgatgc cgccgccatc gcccgagccg gcgcccgcgg cgagcgcggg
     1141 gatcgactgc gccgtctggt actgcatgaa cttgcccatg tcgccgacca tgcccatgcc
     1201 gatcttctgg tcgaggatct tctgcaggtc ttcgggcagc gagatgttct gcatcgtcac
     1261 catctcgagc ttcaggccga gcttggcgaa cgccggcgcg gtcgcttcct gcaacgcctt
     1321 ggcgaactcg acctggttgg ctgccaggtc gaggaagggc gtgccgctcg cgccgaccgc
     1381 gtccgagatg tgctgcagca tcaggccgcg caactggccg tcgaggtcgc tgacggtgta
     1441 gcgctcgcgc gtgccggaga tctcgttgta gaacaggcgc gggtcggcga tccggtaggc
     1501 gtagttgccg aaggcgcgca ggcgcacggc gccgaaatcc ttgtcgcgga tcgtcaccgg
     1561 ctggctcgtg ccccagcgct gatcgatctg ctggcgcgtg ctgaagaaat agacgtcgct
     1621 cttgaagggg ctcttgaaga gcttgtccca gttctgaagg taggtgagga tcggtagcgt
     1681 cgccgtcgtc agcgtgtagc ggccggggcc gaagacgtcg gcgaccttgc cttcgttgac
     1741 gaacatcgcg acctgcgatt cgcgcaccgt gagcgagccg ccgttctgga tctcgcggtc
     1801 ttccatcggg tagcgccagg cgagcgtgcc gtcgctgtcc tccgtccatt cgatgatgtc
     1861 gatgaactgt ttcttgatga aatccatcag cgccatggca gcggtctccc acacaggccc
     1921 cggacatccg ggtgcggcga ataataaggc tcacctccgg aaaacaatcc ccacaagggg
     1981 tgttcgcgca tgaacgaatc gacccctttg aagctcgcgg tgatcggtgc cgggccggtc
     2041 ggtctggcgc tggcgctgca cgccgccaac gcgctccccg atgccgagat cacgctcttc
     2101 gatgcgcggc cgcttgacaa ggacgtcgcc ggcgatccgc gcacgctcgc cctctcgctc
     2161 ggcagcgtcc agctgctgca gcggctcggc gcgtggcggc ccgagagcgc gcagccgatc
     2221 gccgaggtgc acgtctcgca ggacgcgccc tcgctgctcg gcgccgtctc gtggcgtttc
     2281 ggcgagccgg cgctgacgat ccgggcgatc gacgaggcgg tgactatgct cggcgcggta
     2341 atgagctacg gccacgtcgt cgcgccgctg caggcggcgt ggcgtgagac gcaggcgcgc
     2401 gcgccgcagc ggctcttcaa ccgcttcggc agcaacgtca cggcgctgaa gaaggtcgac
     2461 tcgccgcgcg gcgtcgaggt cgactcggga attgccgaaa cagagcgctt cgacctcgcc
     2521 gtcgtcgccg agggcggcgt cttcgccacc gcggcgagga gcgacctcgt cgccggcgcg
     2581 cgcccgccgg cgctgcgcca cgactacggc cagaccgcgt gggtcggcat cgccacgttc
     2641 gccggcggcg acccggccag caccggcggc gtcgcctacg agcgcttcac gcgccacggc
     2701 ccggccgcgt tgctgccgtt gagagacggc cgcgccggcc tggtctggtg cgtcgacagc
     2761 cgcgacgatc cggtgaagga cctcgacgat gcgcagcgcg tcgccgtcct caacacgatc
     2821 ttccatccgc gcacgccgcg cctggccgcg gtgtcgccgt tgaaggcgtt ctcgctcggc
     2881 ctctccgccg agcgcaccct gaccgacggt cgcacggttc gcatcggcaa cgccgcgcag
     2941 acgctgcacc cggtcgcggg ccagg
//
LOCUS       DASVHM010000495         1915 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_251679, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000495 DASVHM010000000
VERSION     DASVHM010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251679"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..473
                     /locus_tag="VF308_09315"
     CDS             6..473
                     /locus_tag="VF308_09315"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX7436895.1"
                     /translation="MTSTGIVRAEEIAGKTGLQMFEAMLAGELPRAPIADTLDFALID
                     VTFGHAVFQGHPLPRHYNPLGAVHGGWFATLLDSALGCAVHSALPAGKAYTTAELKLN
                     IVRPLTDKVVLVRAVGDVIHLGGRMATADGRLTGADGKLYAHASTTCFIFDTP"
     gene            470..859
                     /gene="gloA"
                     /locus_tag="VF308_09320"
     CDS             470..859
                     /gene="gloA"
                     /locus_tag="VF308_09320"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011805290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004462 - lactoylglutathione lyase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0051596 - methylglyoxal catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HEX7436896.1"
                     /translation="MRLLHTMLRVGNLKRSTDFYTRVMGMQLLRTTERPEQKYSLAFV
                     GYGSNPEHAEIELTENHGVDHYELGTAYGHIAIAVPDAYAACDSIRANGGAVTREAGP
                     VKGGTTVIAFVTDPDGYKIELIERKGE"
     gene            complement(879..1502)
                     /gene="eda"
                     /locus_tag="VF308_09325"
     CDS             complement(879..1502)
                     /gene="eda"
                     /locus_tag="VF308_09325"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012205592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008675 -
                     2-dehydro-3-deoxy-phosphogluconate aldolase activity
                     [Evidence IEA];
                     GO_function: GO:0008700 - 4-hydroxy-2-oxoglutarate
                     aldolase activity [Evidence IEA];
                     GO_process: GO:0009084 - glutamine family amino acid
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HEX7436897.1"
                     /translation="MDALALADHGPVIPVIVIDDFDAAVPLAQALVRGGVRVLEITLR
                     MPVALRAIEAIARAVPEAIVGAGTVRSAADVRAAQDAGCRFAVSPGYLPGIGQACAEA
                     RLALLPGVATATEVMQASTDGFRFLKFFPAEAAGGVAMLKALAGPFADVAFCPTGGIG
                     AESAARYLALANVKVVGGSWLTPADAVAAKDWARITRLARAASGLRG"
     gene            complement(1555..>1915)
                     /locus_tag="VF308_09330"
     CDS             complement(1555..>1915)
                     /locus_tag="VF308_09330"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEX7436898.1"
                     /translation="APAPMAAAPIGAAEVAPAPGGSLFFEVGLSRLPAEALDTLGQVA
                     DAARATEGAMVEISANYPSTGDAAVNAKLATERAQAVRHALEANGVAPRRMRVRIAQA
                     QPGADPRQANRVELRLR"
BASE COUNT          297 a          711 c          651 g          256 t
ORIGIN      
        1 cgcgcatgac gagcaccggc atcgtccggg ccgaagagat cgccggcaag accggcctgc
       61 agatgttcga ggcgatgctc gccggcgaat tgccacgcgc tccgatcgcc gacacgctcg
      121 acttcgcgct gatcgacgtc accttcggcc acgcggtgtt ccagggccac cctctgcccc
      181 ggcactacaa cccgctcggc gcggttcacg ggggctggtt cgcgaccctg ctcgattcgg
      241 cgctgggctg cgccgtccac tccgccctgc cggccggcaa ggcgtatacc accgcggaac
      301 tgaagctcaa catcgtgcgc ccgctgaccg acaaggtggt gctcgtgcgc gcggtcggcg
      361 acgtgatcca cctcggcggc cgcatggcga ccgccgacgg acgccttacc ggtgcggacg
      421 gcaagctgta cgctcacgcc tccaccacct gcttcatctt cgacacacca tgagacttct
      481 gcacacgatg ctgcgcgtcg gcaacctgaa acgctcgacc gacttctaca cccgggtgat
      541 gggcatgcag ctgctgcgca ccaccgaacg gccggaacag aaatactcgc tcgccttcgt
      601 cggctacggc agcaaccccg agcacgcgga gatcgaactg accgagaacc acggcgtcga
      661 ccattacgag ctcggcaccg cgtacggcca catcgcgatc gcggtgcccg atgcctacgc
      721 cgcctgcgac agcatccgcg cgaatggcgg ggcggtcacg cgcgaggccg ggccggtgaa
      781 gggcgggacg accgtgatcg ccttcgtcac cgaccccgac ggctacaaga tcgagctgat
      841 cgaacgcaag ggcgagtgag gcgcgccgcg cttggaacct agccgcgcag cccgctcgcg
      901 gcccgcgcca gccgggtgat ccgggcccag tccttcgcgg cgacggcgtc ggcgggcgtc
      961 aaccaggagc cgccgacgac cttgacgttg gcgagggcga ggtagcgcgc ggccgattcg
     1021 gcgccgattc cgccggtcgg gcagaacgcc acgtcggcga acggcccggc cagcgccttc
     1081 agcatcgcca cgccgcccgc cgcctcggcc gggaagaact tgaggaagcg gaagccgtcg
     1141 gtacttgcct gcatcacctc ggtcgcggta gccacgccgg gcagcagcgc aagcctggcc
     1201 tcggcgcatg cctgcccgat cccgggcagg tagccggggc tgaccgcgaa gcggcagccg
     1261 gcgtcctgcg ccgctcgtac gtccgccgcg ctgcgcacgg tgccggcacc gacgatcgcc
     1321 tcgggcaccg cgcgggcgat cgcctcgatc gctcgcagcg cgaccggcat gcgcagcgtg
     1381 atttcgagca cccgtacccc accccgcacc agcgcctgcg cgagcggcac ggccgcgtcg
     1441 aaatcgtcga tgacgatgac cggaatcacc ggtccgtggt cggcgagcgc gagcgcgtcc
     1501 atgggcggcg gcggcgcagg attcatgtgc cgccgcgggt gatcacgcga gcgctcatcg
     1561 cagccggagt tcgacgcggt ttgcttggcg cgggtcggcc ccgggctggg cttgcgcaat
     1621 cctcacccgc atccgcctcg gcgcgacacc gttcgcctcg agggcatggc gcacggcctg
     1681 ggcccgttcg gtcgccagct tcgcgttcac ggcggcgtct cccgtgctcg ggtaattggc
     1741 cgaaatctcg accatggcgc cctccgtagc gcgcgccgca tcggcgacct gaccgagcgt
     1801 gtcgagcgcc tcggccggca ggcgcgacaa gcctacctcg aagaagaggg acccacccgg
     1861 ggccggagcg acttcggcag cgccgatcgg cgcagcggcc atcggcgcag gggcc
//
LOCUS       DASVHM010000496         2526 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1046137, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000496 DASVHM010000000
VERSION     DASVHM010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1046137"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            184..>2526
                     /locus_tag="VF308_09335"
     CDS             184..>2526
                     /locus_tag="VF308_09335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014005702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic beta 1-2 glucan synthetase"
                     /protein_id="HEX7436899.1"
                     /translation="MLKRLGGAGDPIEEAPLRAELFTADQMEQHGKSLAAVHDFTLST
                     APDRLRPRLADNEKTLVEVCTLLARQAEPVRRITPAGDWLLDNFYLIEEAIRTAKRHL
                     PPGYSRELPRLRSGPNAGLPRVYDLALQAVAHGDGRLGRGPLTRFVASYQTVKPLKLG
                     ELWAVPIMLRLALIENLRRVAVRVATSRGERGLAGQWADRMLEVAEKDPKGLILVVAD
                     MARSDPPMTAPFVAELARRLHGRSAALALPLSWVEQRLGEDHQTIEQLVQLEAQHQAA
                     AQVSVSNSIGSLRLLGSTDWREFVETLSTVDHALRDDPADVYARMDFATRDTYRHAVE
                     RIARNSEAGEVEVARAAVELAREAARRAEPGRTHEAHVGYYLVDAGREQLERQARMRL
                     GALERARRAIARRPLVWYAGSIVSATVLLAAAVLLWASAGGSRPFSIVHPGWWLAAAA
                     LVVLTASSQLAVSIVNWLAMLVTAPKTLPRMDFSFAIPRSSRTLVVVPTMLDSEEGIQ
                     ELVEALEVRFLANRDAQLHFGLLTDFHDAHEEKCDGDELLLNAARTRIEELNRKYREP
                     ASEASGGDLFFLFHRPRLWNPREGVWMGHERKRGKLADLNALLRGGSTERFSLIVGHT
                     AQLSGLRYVITLDADTQLPRDSARQFVATMAHPLNRPRYGGTPDSPRVAEGYGILQPR
                     VGVSLRATNRTRYGRLFGGEPGIDPYTRAVSDVYQDLFREGSFIGKGIYDVDAFEHVL
                     GGRLPENRILSHDLLEGYYARSGLLSDVELVEESPARYDAD"
BASE COUNT          387 a          925 c          840 g          374 t
ORIGIN      
        1 agcctgccca agaccggttc aggaacggcg gcggaagcgc tgggcgcttc ccctacagtt
       61 ggcgggtcgt ccgcacgaaa gggctttgct ctactcttgg ccgagccccc gcaccgcaat
      121 ccgcgactcc ccttttcctg actcccgatg cgcaacctcg accctcgagc cggaatcctt
      181 cagatgctca aacgcctggg cggcgcaggc gatcccatcg aggaggcgcc gctgcgcgcc
      241 gagctgttca ccgccgacca gatggagcag cacggcaaga gccttgcggc ggtccacgat
      301 ttcacgcttt cgactgcgcc cgatcgactc cggccacgac tcgccgacaa cgagaagacc
      361 ctcgtcgagg tctgcacgct gctcgcccgg caggccgagc cagtccggcg catcacgccg
      421 gcgggcgatt ggctgctcga caacttctac ctcatcgagg aagcgatccg cacggccaag
      481 cggcatctgc ctcccggcta cagccgcgag cttccgcgcc tgcggagcgg gccgaatgcg
      541 gggctgccgc gcgtctacga cctcgcgctg caggccgtgg cgcatggcga cggccgactc
      601 gggcgcggcc cgctgacgcg cttcgtggcg tcgtaccaga ccgtgaaacc cctgaagctc
      661 ggcgagctgt gggccgttcc gatcatgctg cggctcgccc tgatcgagaa cctgcgtcgc
      721 gtcgcggttc gcgtcgcgac gagccgcggc gaacgcggtc tcgccgggca gtgggccgac
      781 cgcatgctcg aggtggccga gaaggacccg aaggggctga tcctggtcgt ggccgacatg
      841 gcccgctccg atccgccgat gacggcgccc ttcgtcgccg agctcgccag gcgcctgcac
      901 ggccgcagcg ccgcgctcgc gctgccgctc agctgggtcg aacagcgcct gggcgaggac
      961 caccagacca tcgagcaact ggtgcagctc gaagcgcagc accaggccgc ggcgcaggtc
     1021 tcggtcagca acagcatcgg cagcctgcgc ctgctcggct cgaccgactg gcgcgagttc
     1081 gtcgagacct tgtcgaccgt ggatcacgcc ttgcgcgacg acccggcgga cgtgtatgcg
     1141 cgcatggact tcgccacgcg cgacacctac cgccatgcgg tcgagcgcat cgccaggaat
     1201 agcgaggccg gcgaagtcga ggtggcgcgc gccgccgtcg aactggcccg cgaggcggcg
     1261 cgccgcgccg agcccggtcg aacgcacgag gcgcacgtcg gctactacct cgtcgatgcc
     1321 ggccgcgagc agctcgaacg ccaggcccgg atgcgcctcg gcgcgctgga gcgggcgcgc
     1381 cgggccatcg cgcgacggcc cctggtctgg tatgcgggat ccattgtctc ggcgaccgtc
     1441 ctgctcgccg cggcggtcct gctctgggcc tccgccggcg gttcgcggcc attctccatc
     1501 gtgcacccgg gctggtggct cgcggccgcg gcgctggtgg tgctgaccgc ctcgagccag
     1561 ctcgcggtgt cgatcgtcaa ctggctcgcg atgctcgtca ccgcaccgaa gacccttccc
     1621 cggatggatt tttccttcgc cattccgcga tcgtcacgca cgctcgtggt ggtgccgacg
     1681 atgctcgaca gcgaggaagg gatccaggaa ctggtcgagg cgctcgaagt gcgctttctg
     1741 gccaaccgcg atgcgcaact gcacttcggc ctgctcaccg acttccatga cgcccacgaa
     1801 gagaagtgcg acggcgacga actgctgctg aacgccgcgc gcacccgcat cgaggaactg
     1861 aaccgcaagt accgcgagcc cgccagcgaa gcttccggcg gcgacctctt cttcctgttc
     1921 caccgcccgc gcctgtggaa cccgcgcgaa ggcgtgtgga tgggccacga gaggaagcgc
     1981 ggcaagctcg ccgatctcaa cgccctgctg cgcggcggca gcaccgagcg cttctcgctg
     2041 atcgtcggcc acaccgcgca gctgtcgggg ctgcgctacg tcatcaccct cgacgccgac
     2101 acgcagttgc cgcgcgattc ggcccggcag ttcgtcgcga cgatggcgca tccgctgaac
     2161 cgcccgcgct atggcggcac gcccgactcg ccccgggtgg ccgagggcta cggcatcctg
     2221 cagccgcgcg tcggcgtgag cctgagggcc acgaaccgca cgcgctacgg ccggctcttc
     2281 ggcggcgagc ccggcatcga cccgtacacg cgggcggtta gcgacgtcta tcaagacctc
     2341 tttcgcgaag gctcgttcat cggcaagggc atctacgacg tcgacgcgtt cgagcatgtg
     2401 ctgggcggca ggctccccga aaaccgcatc ctcagccacg acctgctcga aggctactat
     2461 gcgcgcagcg ggctgctgag cgacgtcgaa ctcgtcgagg aatcgccggc ccgctacgac
     2521 gccgac
//
LOCUS       DASVHM010000497         2188 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1046217, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000497 DASVHM010000000
VERSION     DASVHM010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2188
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1046217"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..249)
                     /locus_tag="VF308_09340"
     CDS             complement(<1..249)
                     /locus_tag="VF308_09340"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEX7436900.1"
                     /translation="MKWVKRVSVGILVLGLLGAAAAWLYALRTLPQVDGSVAVAGLAS
                     EVRIERDAHGIPTIKASSPEAALFGLGYAHAQDRRWQLE"
     gene            372..737
                     /locus_tag="VF308_09345"
     CDS             372..737
                     /locus_tag="VF308_09345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436901.1"
                     /translation="MPLSLLHRLLHTLARRAQPGTRTTARLGASLTAAREDFRAALDD
                     MAKVQTSDTLDLIRKARSCNELWHLRSAVFSLVSCHHDQDEAKRRLSRIDRHFPSRVR
                     RAGPAARAAADSHESVPPL"
     gene            complement(775..1296)
                     /locus_tag="VF308_09350"
     CDS             complement(775..1296)
                     /locus_tag="VF308_09350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018435724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1993 domain-containing protein"
                     /protein_id="HEX7436902.1"
                     /translation="MSISMHSASVPIFVRMLGNLTVWLDKAEAHAAARKFDTSVYLAA
                     RLAPDMLAFTKQIQIACDAVKFGVARLAGVEAPKFEDDEASFADLRARIAKTLDFVQS
                     VPASRLDGTEAKDVVVPRRDGSMTLKGEVYLKHYVLPNFFFHLTTAYALLRHNGVELG
                     KADFLGALQSQPG"
     gene            1391..>2188
                     /locus_tag="VF308_09355"
     CDS             1391..>2188
                     /locus_tag="VF308_09355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase family protein"
                     /protein_id="HEX7436903.1"
                     /translation="MNIIILDDYQDAVRKLKCAALLEHLNAKVFTNTVKGIGQLSVRL
                     RDAEVLVLIRERTHFPRQLLEKLPKLKLISQTGKAGAHIDIEACTRLGIAVAESAGSP
                     VATAELTWALILAAMRRLPQYIGNLKHGAWQSSGLRSASMPPNFGLGLVLKGKTLGIW
                     GYGRIGRLVAGYGHAFGMNVLVWGSEASRNNAANDGHAAAPGCAEFFEACDVLSLHLR
                     LNEQTRGIVEADALARMKPTSLLVNTSRAELIEEGALVHALNRGRPGM"
BASE COUNT          373 a          792 c          698 g          325 t
ORIGIN      
        1 ctcgagttgc caccggcgat cctgcgcatg ggcgtagccg agcccgaaca gggcggcttc
       61 gggagaggac gccttgatcg tcggaatgcc gtgcgcgtcg cgttcgatgc gaacctccga
      121 cgccaggccc gcgaccgcga cgctgccgtc gacctgcggc agcgtccgca gcgcatagag
      181 ccacgccgcc gcggcgccga gcaaccccag caccaatatg ccgaccgaca cgcgcttgac
      241 ccacttcatc gttcgttgct cccgagaagg ccgcgatccg gcacgctatt cagagctttg
      301 ccgcgaccgc cgaaatcgac aatcccgaga caccctgccg cgccgcggcg ccagcgcccc
      361 aaccgcgacc gatgccattg tccctcctcc accgactgct gcacacgctg gcacggcgcg
      421 cccagccggg cacccggacc accgcccggc tcggcgcttc actcaccgcc gcccgcgagg
      481 acttccgcgc cgcgctcgac gacatggcga aggtgcagac gagcgacacg ctcgacctga
      541 ttcgaaaggc acgatcgtgc aacgagctct ggcatctgcg ctccgcggtg ttcagcctcg
      601 tctcctgcca tcacgaccag gacgaggcga agcgtcgcct gagccggatc gaccgtcact
      661 ttccgagccg cgtgcgccgc gcggggccgg ccgcccgggc ggccgccgac agccacgaat
      721 cggttccgcc gctctgacca cgggtgcggc ggcggcatcg cggcgccgga ctcgtcagcc
      781 cggctgagac tgcagcgcgc cgaggaaatc ggccttgccg agctcgacgc cgttgtggcg
      841 cagcagcgcg tacgcggtcg tcaggtggaa gaagaaattg ggcagcacgt agtgcttcag
      901 gtagacctcg cccttgagcg tcatcgaacc gtcgcggcgc ggcacgacca cgtccttcgc
      961 ctcggtgccg tcgaggcgtg aggccgggac cgactgcacg aaatcgagcg tcttcgcgat
     1021 ccgcgcgcgc aggtcggcga agctcgcctc gtcgtcttcg aacttcggcg cctcgacgcc
     1081 ggcaaggcgc gcgacgccga acttgaccgc atcgcaggcg atctggatct gcttcgtgaa
     1141 cgccagcatg tcgggcgcga ggcgtgccgc cagatagacg ctggtgtcga acttgcgggc
     1201 cgcggcgtgc gcctcggcct tgtcgagcca caccgtcagg ttgcccaaca tgcgaacgaa
     1261 aatcggcacg ctggccgagt gcatcgagat cgacattcga agtctcctgg tttgaagtcg
     1321 tcgatgctac aggctagggc acggacgtgc acaatccgac ggcacccgaa ccgccgactc
     1381 cttttccacc gtgaacatca tcatcctcga cgactaccag gatgccgtcc gcaagctgaa
     1441 atgcgccgca ctcctcgagc acctcaacgc caaggtgttc accaacaccg tgaagggcat
     1501 cggccagctc tcggtccggc tgcgcgacgc ggaagtgctc gtgctgatcc gcgaacgcac
     1561 ccatttcccg cgccagctcc tcgaaaagct gcccaagctg aagctcatct cgcagaccgg
     1621 caaggccggc gcgcatatcg acattgaagc ctgcacgcgg ctcggcatcg cggtggcgga
     1681 aagcgcgggc tcgccggtcg cgacggccga actgacctgg gcgctgatcc tagccgcgat
     1741 gcgacggctg ccgcagtaca tcggcaacct gaagcacggc gcctggcaat catcgggcct
     1801 gcgctcggcc tcgatgccgc ccaacttcgg cctcggcttg gtgctcaagg gcaagaccct
     1861 cggcatctgg ggttacggcc ggatcggccg cctcgtcgcc gggtacgggc acgccttcgg
     1921 catgaacgtg ctcgtctggg gcagcgaggc gtcgcgcaac aacgccgcga acgacggcca
     1981 tgccgccgcg ccggggtgcg ctgaattctt cgaagcctgc gacgtcctgt cgttgcatct
     2041 gcgcctgaac gaacagacgc gcggcatcgt cgaggccgat gcgctggcgc gcatgaagcc
     2101 gacctcgctg ctcgtcaaca cctcgcgcgc cgagctcatc gaagagggtg cgctggtgca
     2161 tgccctcaac cgcggccggc ccggcatg
//
LOCUS       DASVHM010000498         4233 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1336565, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000498 DASVHM010000000
VERSION     DASVHM010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4233
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1336565"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VF308_09360"
     CDS             <1..212
                     /locus_tag="VF308_09360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HEX7436904.1"
                     /translation="PFSVVGHDDLQAYRGIQAGLHASGNPWISLHRNFDPDEIGQKDV
                     TTIGTSEISMRNQYRAWSRYMTLTM"
     gene            220..714
                     /locus_tag="VF308_09365"
     CDS             220..714
                     /locus_tag="VF308_09365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012836537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic-ring-hydroxylating dioxygenase subunit
                     beta"
                     /protein_id="HEX7436905.1"
                     /translation="MNDTSPAITERQLIAFVVHEARLLDEKRYAEWNALFTDDAYYWV
                     PLVPDQPDGLNHTSHLYEDKLLRELRIQRLKSPRAFSQQPPTRSHHLLQTPTIESADA
                     AANAYVVRSEFHYTESQGDELNFFVGTCWHHLRIEAGALRIELKRVDLINCDAALPAV
                     QLFI"
     gene            720..2351
                     /locus_tag="VF308_09370"
     CDS             720..2351
                     /locus_tag="VF308_09370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7436906.1"
                     /translation="MLTAHDAFLASAARTPGAAFLCTESVTAATYGIAAGETSWSDAA
                     LEVERLRRRYAEAGYGHGHRVGLLLENRPAFLFHWLALNALGASVVPINAEMRSAELE
                     YLVGHSGIVLAVVLPGRGVDLQAAAGRAGVALATHERREDVDVPFPRALQPAPRGAEP
                     VGLDTECALLYTSGTTGRPKGCMLSNAYYLNVGRWYAAIGDACSVRPDRERIITPLPL
                     NHVNAMAFSAMVILVAGGCLVQLDRFHPQTWWQSVRESRATIIHYLGVMPALLIVADP
                     DPRDAEHAVRWGFGAGVDRKNHAAFEARFGFPLIEAWAMTETGAGGVIMATREPRLVG
                     THCFGRPEPFVEVRLVDDEGRDVPAGTPGELLVRATGSDPRRHFFSGYLKDEAATEEA
                     WAGGWFHTGDMVRSDADGDLHFVDRKKNVIRRSGENISAVEVESVLNQHPAVKASAVA
                     AAPDDLRGDEVLACIVTREPVAEAARAQLAASIVEHALGQLAYFKAPGYVAFVDELPL
                     TLSQKIQRGELRKLAQTMPAQAHCIDTRSMKKRQA"
     gene            2353..3528
                     /locus_tag="VF308_09375"
     CDS             2353..3528
                     /locus_tag="VF308_09375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019654666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HEX7436907.1"
                     /translation="MNLRRRQSYEGVAVAVPVTVPYRRYSTHGAHWFIGQALDALVER
                     SGIPKDRIDGLTVSSFSLSPDTAVGVTQHLGLSPRWLDHIPTGGASGVMALRRAARAV
                     QAGDADIVACVGADANHVESFRQMLGGFSHFARDASYPYGSGGPNSIFAFITANYMRT
                     YGAAREDFGRIVVAQRANALKNPNALFKVPLTLAAYMDARPISDPIHLFDCVMPCAGA
                     EAFLVMSEERARDLGLAHAVVRGAIERHNAYSDDPVLLRGGWLMDRDELYAQAGVRPD
                     AIDFVQTYDDYPVVVMLQFEDLGFCDKGEGPAFVRARTLTHDGDFPNNTSGGQLSAGQ
                     AGCAGGFLGMTEAIRQLTGEAGECAVADAKVGLVSGFGMVTYDRCLCTGAVILGGSS"
     gene            3525..>4233
                     /locus_tag="VF308_09380"
     CDS             3525..>4233
                     /locus_tag="VF308_09380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold domain-containing protein"
                     /protein_id="HEX7436908.1"
                     /translation="MTMPLMKPRRKNPALRTRQMNLPPWARGRTALGMTAAAAEGRFE
                     LQVCQRCQAVQYPPRDACHRCLSPQLKWAPQDGAGELLSETVLHHSNDPFYRERLPWR
                     LGLVRLDAGPTVIVHLHGDVSSPPPWAGAGRAPQQPQVRVHVGARLDRAGAAVLIGFP
                     PEESEHMADDKMLREMTSDPKFRKILVTDGKTEVGQALVKALVKAGADIVWVGHAEPW
                     KKLPGLDDITALPQVTLV"
BASE COUNT          661 a         1531 c         1437 g          604 t
ORIGIN      
        1 cgccgttctc ggtggtcggc cacgacgacc tgcaggccta ccgcggcatc caggcggggc
       61 tgcatgcgag cggcaacccg tggatcagcc tgcaccgcaa cttcgatccg gacgagatcg
      121 gccagaaaga cgtcaccacg attggcacga gcgagatttc gatgcgcaac cagtaccgcg
      181 cctggtcgcg ctacatgacc ttgacgatgt gagggcgcga tgaacgacac gagccccgcg
      241 atcaccgagc gccaactcat cgccttcgtc gtgcacgagg cgcggctgct cgacgagaag
      301 cgctacgcgg aatggaacgc gctcttcacc gacgacgcct actattgggt gccgctcgtc
      361 ccagaccaac ccgatggcct caaccacacc tcgcacctct acgaagacaa gctccttcgg
      421 gagctccgca tccagcgcct gaagagcccg cgcgcgttct cgcagcagcc gccgacgcgc
      481 agtcaccacc tgctgcagac gccgacgatc gagtcggccg atgccgcggc gaacgcgtac
      541 gtcgtgcgca gcgagttcca ttacaccgag tcgcagggcg acgagctgaa cttcttcgtc
      601 ggcacctgct ggcaccacct gaggatcgaa gcgggcgcgc tgcgcatcga gctcaagcgc
      661 gtcgacctga tcaactgcga cgccgcgctg ccggccgtcc agctcttcat ctgagatcga
      721 tgcttaccgc ccacgacgcc tttctggcca gcgcggcgcg cacgccgggc gccgcgttcc
      781 tctgcaccga gtcggtaacc gccgcgacct acggcatcgc ggccggcgag acgagctgga
      841 gcgacgcggc gctcgaagtc gagcggctgc gccggcgtta tgcggaagcc ggctacggcc
      901 acggccaccg ggtcggcctg ctgctcgaga accggccggc gttcctcttc cactggctgg
      961 cgctgaacgc gctcggcgcg agcgtcgtgc cgatcaatgc cgagatgcgt tcggccgagc
     1021 tcgaatacct ggtcggccac agcgggatcg tgctcgcggt cgtgctgccc gggcggggcg
     1081 tcgacctgca ggcggcggcc ggccgcgccg gcgtcgccct cgccacccac gaacggcgcg
     1141 aagacgtcga tgtgccgttt ccgcgcgcgc tgcagcccgc gccgcgaggc gccgaacccg
     1201 tcggcctcga caccgaatgc gcgctgctct acacgtcggg cacgaccggc cgcccgaagg
     1261 gctgcatgct gagcaacgcc tactacctca acgtcgggcg ctggtatgcc gcgatcggcg
     1321 acgcctgctc ggtgcggccc gatcgcgaac gcatcatcac gcccttgcca ctgaaccacg
     1381 tcaacgcaat ggcgttctcg gcgatggtga tcctggtcgc cgggggttgc ctggtgcagc
     1441 tcgaccgctt ccacccgcag acctggtggc agagcgtgcg cgagagccgg gcgacgatca
     1501 tccactacct gggcgtgatg ccggcgctgc tgatcgtcgc cgaccccgat cccagggatg
     1561 ccgagcacgc cgtgcgctgg ggcttcggcg ccggcgtcga ccgcaagaac cacgcggcgt
     1621 tcgaggcgcg cttcggcttt ccgctgatcg aggcctgggc gatgaccgag accggcgccg
     1681 gcggcgtgat catggcgacg cgcgagccgc gcctcgtcgg cacccattgc ttcggccggc
     1741 ccgagccgtt cgtcgaggtc cggctcgtcg acgacgaagg tcgcgacgtg cccgccggca
     1801 cgccgggtga gctgctcgtg cgcgcgaccg gctccgatcc gcggcgccac ttcttctcgg
     1861 gctacctgaa ggacgaagcc gcgaccgagg aagcatgggc cggcggctgg ttccacaccg
     1921 gcgacatggt gcgcagcgac gccgacggcg atctccactt cgtcgatcgc aagaagaacg
     1981 tgatccggcg cagcggcgag aacatctcgg cggtcgaggt cgagagcgtg ctgaaccagc
     2041 atccggcggt gaaggcatcc gcggtcgccg cggcgcccga cgacttgcgc ggcgacgagg
     2101 tgctggcctg catcgtcacg cgcgagccgg tggccgaagc cgcgcgggcg cagctcgccg
     2161 ccagcatcgt cgagcatgcg ctcggccagc tcgcgtactt caaggccccc ggctatgtcg
     2221 ccttcgtcga cgagctgccg ctgacgctgt cgcagaagat ccagcgcggc gagctgcgca
     2281 agctcgcgca gacgatgccg gcacaagcgc attgcatcga cacccgctcg atgaagaagc
     2341 ggcaggcctg acttgaacct gcgccgacgc cagtcgtacg aaggagtcgc ggtcgcggtg
     2401 ccggtgacgg tgccgtatcg gcgctattcg acgcacggcg cgcactggtt catcggccag
     2461 gcgttggacg cgctggtcga gcgctcgggc atcccgaagg accgcatcga cggcctcacg
     2521 gtcagcagct tctcgctctc ccccgacacc gcggtcggcg tgacgcagca cctgggcttg
     2581 agcccgcgct ggctcgacca catcccgacc ggcggcgcct cgggcgtgat ggcgctgcgc
     2641 cgggctgcac gcgcggtgca ggccggcgac gccgacatcg tcgcctgcgt cggcgccgac
     2701 gcgaaccatg tcgagtcgtt ccggcagatg ctcggcggct tcagccactt cgcgcgcgac
     2761 gcgagctacc cgtacggctc gggcggcccg aactcgatct tcgcgttcat caccgcgaac
     2821 tacatgcgca cctatggcgc ggcgcgcgaa gacttcggcc gcatcgtggt cgcgcaacgc
     2881 gccaacgcgc tgaagaaccc gaacgcgctc ttcaaggtgc cgctgacgct cgcggcgtac
     2941 atggacgcgc gcccgatctc agacccgatc cacctgttcg actgcgtgat gccgtgcgcc
     3001 ggcgccgagg cgttcctggt gatgagcgag gagcgcgccc gcgacctcgg cctcgcgcac
     3061 gcagtcgtgc gcggcgcgat cgagcgccac aacgcgtact ccgacgaccc ggtgctgctg
     3121 cgcggcggct ggctcatgga ccgcgatgag ctctacgcgc aggccggcgt gcgccccgac
     3181 gcgatcgact tcgtgcagac ctacgacgac tacccggtcg tcgtgatgct gcagttcgag
     3241 gacctgggct tctgcgacaa gggcgaaggc ccggccttcg tgcgcgcccg cacgctgacg
     3301 cacgatggcg acttcccgaa caacaccagc ggcggccagc tctcggccgg ccaggccggc
     3361 tgcgccggcg gctttctcgg catgaccgaa gcgatccgcc agctcaccgg cgaggccggc
     3421 gagtgcgcag tggccgacgc caaggtcggc ctcgtctccg gcttcggcat ggtcacgtac
     3481 gaccggtgcc tgtgcaccgg cgccgtgatc ctcggggggt cgtcatgacc atgccgctga
     3541 tgaagccgcg gcgcaagaac ccggcgctgc ggacgcggca gatgaacctg ccgccgtggg
     3601 cgcgcggccg caccgcgctc ggcatgaccg cggccgccgc cgaaggccgc ttcgagctgc
     3661 aggtgtgcca gcgctgccag gccgtgcaat acccgccgcg cgatgcctgc caccgctgcc
     3721 tttcgccgca gctgaaatgg gcgccgcagg acggcgccgg cgagctgctc agcgagacgg
     3781 tgctccacca cagcaacgac ccgttctacc gcgagcggct gccgtggcgg ctcggcctcg
     3841 tgcgccttga tgccggcccc acggtgatcg tgcacctgca cggcgacgtc agctccccgc
     3901 caccgtgggc tggtgccggc cgcgcaccgc aacaaccaca agtgcgcgtg catgtcggcg
     3961 cgcgcctcga ccgcgccggc gccgcggtgc tgatcggttt tccgcccgag gagagtgaac
     4021 acatggccga cgacaagatg ctgcgcgaga tgaccagcga cccgaagttt cgaaaaatcc
     4081 tcgtcaccga cggcaagacc gaggtcgggc aggcgctcgt caaggcgctc gtgaaagccg
     4141 gcgccgacat cgtctgggtg ggccacgccg agccgtggaa gaagctgccc ggcttggacg
     4201 acatcaccgc gctgccgcag gtgacgctgg tgc
//
LOCUS       DASVHM010000499         2825 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_903734, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000499 DASVHM010000000
VERSION     DASVHM010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2825
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_903734"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..668
                     /locus_tag="VF308_09385"
     CDS             <1..668
                     /locus_tag="VF308_09385"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEX7436909.1"
                     /translation="DETGWLGHEVAREACPGARVGVLSGPSFALEVARGLPTALVAAS
                     VDPGLTRQAVDALHTDTLRIYTSNDPIGVEVGGAVKNVLAIATGIADGLGLGLNARAA
                     LVTRGLAEMTRLGVALGAQAETFMGLSGLGDLVLTATGDLSRNRRVGLRLAEGLPLAR
                     ILAELGHVAEGVRSAAVVLRRAHARGVDMPITEAVVAVLDGALKPAEALLQLMGRGAR
                     PEV"
     gene            complement(683..1153)
                     /gene="trmL"
                     /locus_tag="VF308_09390"
     CDS             complement(683..1153)
                     /gene="trmL"
                     /locus_tag="VF308_09390"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008175 - tRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HEX7436910.1"
                     /translation="MFNIVLVQPEIPPNTGNVIRLAANTGCALHLVEPLGFSMQDRLL
                     RRAGLDYHEFAQVRRHASWPALLEACAPPVERLFAFTTKGGSPFAEVAWRAGDWFVFG
                     SETAGLPDAVRDVFPMTRRIRLPLRAGQRSLNLSNAVAVTVFEAWRQNGYAGAV"
     gene            complement(1175..1798)
                     /locus_tag="VF308_09395"
     CDS             complement(1175..1798)
                     /locus_tag="VF308_09395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEX7436911.1"
                     /translation="MLRFAPALPRCRRCALEVPEGAALRGACITDPPPFDATLAATTY
                     GYRWDRLIAAFKFYSALDLAPALARLLVRAHEAGAGSAPTLLLPVPLSRERQRERGYN
                     QAWELAPRLGRTLHCPADAGLLLRIKDTAHQLAFTPDRRAANVRSAFALEPTRSAEVR
                     GRHVTVVDDVMTTAATAAEIARVLRAGGAAQVDVWVVARTPRSDASR"
     gene            1933..>2825
                     /locus_tag="VF308_09400"
     CDS             1933..>2825
                     /locus_tag="VF308_09400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HEX7436912.1"
                     /translation="MADSPLAALRPFDKVAVDAALRRLAREPKAPWLHGEVARRMGER
                     LAIIRLEPDLILDWWGFLGAGAPLLERTYPNARRIVVEPDAASLERSRAAAVRPWWSA
                     RGWTRAAPRTILDEDDVPAGAQLVWANMMLHAVADPPALFERWQRLLGAEGFVMFSCL
                     GPGTLRELRALYGRLGWPSPSADFIDMHDLGDMLVQAGFADPVMDQETLTLRWDSAEA
                     LLAELRLLGRNTAAGRLPGLRTPRWRDLLLRELEALRGPDGRLGLSFEVAYGHAFKAA
                     PRLRTGAPTTVSLADMRAMIRS"
BASE COUNT          388 a          978 c         1042 g          417 t
ORIGIN      
        1 aggacgagac cggctggctc ggccacgagg tcgcgcgtga ggcctgcccg ggcgcgcgcg
       61 tcggcgtgct ctcgggaccg agcttcgcac tcgaggtcgc gcgtggactg ccgacggcgc
      121 tggtcgcggc aagcgtcgat cccgggctca cccggcaggc agtcgatgcg ctgcacaccg
      181 acaccttgcg catctacacc tcgaacgacc cgatcggcgt cgaagtcggc ggcgcggtca
      241 agaacgtgct cgcgatcgcc accggcatcg ccgacggcct cggcctgggc ctcaatgcgc
      301 gcgccgcgct cgtgacgcgt ggcctcgccg agatgacccg gctcggcgtg gccctcgggg
      361 cgcaggcgga aactttcatg ggtctctccg gtctcgggga tctggtgctg accgccacag
      421 gtgatctgtc gcgcaatcgc cgggtcggat tgcggctcgc cgaaggcttg ccgctggccc
      481 gcatcctcgc cgaactgggt catgtggccg agggtgtgcg cagcgccgcg gtggtgctgc
      541 gccgggcgca cgcgcgcggc gtcgacatgc cgatcaccga ggcggtggtg gcggtgctcg
      601 atggcgcgct gaaacctgct gaagcgctgc tgcagttgat gggccgcggg gcacgtccgg
      661 aggtctgagc gccacgcgcc tttcagaccg cgcccgcgta gccgttttgg cgccacgctt
      721 cgaagacggt caccgccacg gcattgctca ggttcaggct gcgctgcccc gcgcgcagcg
      781 gcagccggat gcgccgtgtc atcgggaaga catcgcgcac ggcgtcggga agcccggccg
      841 tttccgaacc gaacacgaac cagtcgccgg cgcgccaggc gacttcggcg aaaggactgc
      901 cgcccttcgt cgtgaaggcg aagagccgct ccacgggcgg cgcgcaggct tcgagaaggg
      961 ccggccacga ggcgtggcgc cgcacctgcg cgaattcgtg atagtcgagt ccggcgcgtc
     1021 tgagcaggcg gtcttgcatc gagaagccga gcggctcgac caggtgcagc gcgcagccgg
     1081 tgttggcggc gagccggatg acgttgccgg tgttcggcgg aatctcgggc tggaccagca
     1141 cgatgttgaa catggcccga ggcagcgtct gcgatcagcg ggaagcgtcg ctgcgcggcg
     1201 tgcgcgcgac gacccagacg tcgacttgcg ccgcgccgcc tgcgcgcagc acccgtgcga
     1261 tctccgcggc ggtcgccgcg gtcgtcatca cgtcgtcgac gacggtgacg tgccggccgc
     1321 gcacttcggc gctgcgggtc ggttccagcg cgaatgcact gcgcacattc gcggcgcgcc
     1381 gatccggggt gaacgcgagc tgatgcgcag tgtccttgat gcgcagcagc aggccggcat
     1441 cggccgggca gtgcagcgtg cggcctaggc gcggcgccag ttcccaggcc tggttgtagc
     1501 cgcgctcgcg ctggcgctcg cggctcaacg ggacgggcag cagcaaggtc ggtgccgagc
     1561 cggcgccggc ctcgtgggcg cgcacgagca ggcgcgcgag cgcgggtgcg aggtcgagtg
     1621 ccgaatagaa cttgaacgcc gcgatcaggc ggtcccaacg gtatccgtag gtcgtcgcgg
     1681 cgagcgtcgc gtcgaatggc ggggggtcgg tgatgcaggc gcctcggagc gccgcccctt
     1741 cgggcacttc gagggcgcag cgccggcaac gggggagcgc gggcgcgaag cgcagcacgc
     1801 aatcgtcaca caccctttgc cggccccagc cgtggcagac agcgcacagg ctcggcagcg
     1861 cgagtgccgg gctcgggggc agactgtcca accatcgggt cgctcgcacc ggctcaatat
     1921 actgccgcat caatggccga ttccccgctc gccgccctcc ggccgttcga caaggtcgca
     1981 gtcgatgccg cgctgcgccg gctggcacgc gagccgaagg cgccgtggct gcatggcgag
     2041 gtcgcgcggc gcatgggcga gcggctcgcg atcattcgtc tcgagcccga tctgatcctc
     2101 gattggtggg ggtttctcgg cgccggcgcg ccgctgctcg agcggacgta tccgaacgcg
     2161 cgccgcatcg tcgtcgagcc cgatgccgca agcctcgagc gcagccgggc cgcggccgtg
     2221 cggccttggt ggtcggcgcg cggctggacc cgcgccgccc cccggaccat cctcgacgaa
     2281 gacgacgtcc ccgcgggcgc gcaactcgtc tgggccaaca tgatgctgca tgccgtggcg
     2341 gatccgccgg cactcttcga acgctggcag cgtctgctcg gggcagaagg cttcgtgatg
     2401 ttctcgtgcc tgggccccgg cacgctgcgc gaactgcgcg cgctctatgg ccggcttggc
     2461 tggccttcac ccagcgccga cttcatcgac atgcacgacc tcggcgacat gctggtccag
     2521 gccggcttcg ccgatccggt gatggaccag gagacgctca cgctgcgctg ggacagtgcc
     2581 gaggcgttgc tggccgaact gcggctactc ggccgcaaca cggccgcggg tcgcctgccg
     2641 ggattgcgca cgccgcgctg gcgcgacctt ctactgcgtg aactcgaagc gctgcgcggc
     2701 cccgatggac ggctcggcct gagtttcgaa gtggcctacg gccatgcgtt caaggccgcg
     2761 ccgcgcttgc gcacgggcgc gccgacgacg gtctcgctcg ccgacatgcg ggcgatgatt
     2821 cgatc
//
LOCUS       DASVHM010000500         4639 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1046411, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000500 DASVHM010000000
VERSION     DASVHM010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4639
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1046411"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1337)
                     /locus_tag="VF308_09405"
     CDS             complement(<1..1337)
                     /locus_tag="VF308_09405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEX7436913.1"
                     /translation="MASSNALAASPAAAPAPVRPGVVYPPLRGGQLVLGTFALSLATF
                     MNVLDSSIANVSIPAIAGDMGVSPSQGTWVITSFAVANAISVPLTGWLTQRFGQVRLF
                     GASILLFVIASWLCGLAPNLGMLLAFRVLQGLVAGPMIPLSQTLLLSSYPRAKAGSAM
                     AMWAVTVLVAPVAGPLLGGWITDNISWPWIFYINIPVGIVAAGITWSIYRKRDPGPRR
                     MPLDYVGLGLLVLWVGALQIMIDKGKELDWFGSNQIVMLAIVAGVGFMFFLAWELTEK
                     NPIVDLRLFGRRNFLVATLALSVAYGLFFGNVVLLPLWLQQYMGYTATWAGIALAPVG
                     LLAIVLSPWVGKNVSRIDPRKLATVAFLGFALVLWMRSRFNVQADFQTVMIPTLLQGA
                     AMAFFFIPLQAIIFSGLTPDRMPAAAGLSNFVRITAGAIGTSIFTTAWEDRAVL"
     gene            complement(1358..2740)
                     /locus_tag="VF308_09410"
     CDS             complement(1358..2740)
                     /locus_tag="VF308_09410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007864421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEX7436914.1"
                     /translation="MNAREGTLADAPAAPAASNPVAAAAGPRGNRTRKRALLGVTALV
                     VLAGLAYGAYYALVLNHYESTDNAYVQGNVVQLTPQVGGTVVAIDADDTDFVKAGQLL
                     VRLDPADARVALDQAEAQLGQTVREARTLFVNNGAWQAQIASREADLARARSEVARAQ
                     DDVTRREPLVRTGAVGKEEFDHVTSQLAVARSVLSAAQSGVLAAREQLASNQALTQGV
                     SVDQHPNVLRAAARVREAYLGLARADLLSPVDGYVARRSVQLGQRVQAGATLMSVVAL
                     DQVWVDANFKESQLGRLRIGQPVTLEADVYGKKVEYHGTVEGLGAGTGAAFALLPAQN
                     ATGNWIKVVQRVPVRIALDQREVASHPLRVGLSMDAKVDVANIDGKMLADASHRSVAT
                     QTAVFDQVNQQADSEVRKIISANLGRPVNAGPVAGARSETAPVASAPLAAPRRSSALA
                     PSAAVVAHAR"
     gene            complement(2779..4323)
                     /locus_tag="VF308_09415"
     CDS             complement(2779..4323)
                     /locus_tag="VF308_09415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019653374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HEX7436915.1"
                     /translation="MKADRVLRATEVGIPDDCGRPLECAKRRLPTLAAFLIAVASTLV
                     MTFAGCANPGAIAPQATMIAPARVGVSEPAAQAPGLAPDWWLGFGDPVLSALIERALA
                     DNPTLKASLARVERAAASASAADAAQAPQLNGSLELTHQRFTANGLYPPPLAGSTRDT
                     GTLQAAGSWDLDLFGRNRAALDAAIGAERAAEADGQAARVLLASNVARTYVQLARLVE
                     QRAIATRSLAQRDEFLGLIRQRVQAGLDTNVELRQGEGALPETRQQIEAFDEQIVLTR
                     HALAALIVQPPGALDALAPRLGGVRIAALPAALPADLLGRRPDIAAARWRIEAATDDV
                     AAARAQFYPNINLSAFVGLSSIGLDRLLRSGSAQYGAGPAIHLPIFDAGRLRANLRGR
                     AADLDLAVETYNGTVVEAVRDVADQISSLQSIERQRREQGLAQAAAESGYDLATQRYK
                     AGLGTYLTVLTAEATVLNQRRSGADLEARVLESQFVLIRALGGGYAGDFPDRDVALRR
                     TAQTSR"
     gene            complement(4320..>4639)
                     /locus_tag="VF308_09420"
     CDS             complement(4320..>4639)
                     /locus_tag="VF308_09420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007864423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX7436916.1"
                     /translation="MDPGAMTRLLDRLEAKGLCKRVRSTDDRRVVNLALTPEGRKAAD
                     KVPVALAQVMNAHLAGFSKAEWQTLKGFLQRMLDNAETCRDARCAGTPRATGPINQTS
                     ETS"
BASE COUNT          735 a         1573 c         1671 g          660 t
ORIGIN      
        1 agcacggcgc ggtcttccca cgccgtggtg aagatcgagg tcccgatcgc acctgcggtg
       61 atgcgaacga aattgctgag gcccgccgcg gccggcattc gatcgggcgt gaggccggag
      121 aagatgatcg cctgcagcgg aatgaagaag aacgccatcg ccgcgccttg cagcaaggtc
      181 ggaatcatca ccgtctggaa gtcggcctgc acgttgaagc gcgagcgcat ccagagcacg
      241 agcgcaaagc cgaggaaggc caccgtcgcg agcttgcgcg ggtcgatccg gctgacgttc
      301 ttgccgaccc agggcgaaag cacgatcgcg agcaggccga ccggtgccag cgcgatgccg
      361 gcccaggtgg cggtgtagcc catgtactgc tgcagccaga gcggcagcag cacgacgttg
      421 ccgaagaaaa gaccgtaggc gaccgacagc gcgagcgtgg cgacgaggaa gttgcgccgg
      481 ccgaagaggc gcaggtcgac gatcgggttc ttctcggtca actcccaggc caggaagaac
      541 atgaagccga cgcccgcgac gatcgcgagc atgacgatct ggttcgagcc gaaccagtcg
      601 agctccttgc ccttgtcaat catgatctgc agcgcgccga cccagagcac gaggaggccg
      661 aggccgacat agtcgagcgg catgcgcctg ggccccggat cgcgcttgcg gtagatcgac
      721 caggtgatgc cggccgcgac gatgccgacc gggatgttga tgtagaagat ccatggccac
      781 gaaatgttgt cggtgatcca gccgccaagc aagggcccgg cgaccggcgc gacgagcacc
      841 gtgaccgccc acatcgccat cgcgcttccg gctttcgccc gcggatagct cgacagcagc
      901 aaggtctgcg agagcgggat catcggcccc gcgaccaggc cctgcaggac gcgaaaggcg
      961 agcagcatgc cgaggttcgg cgcgagcccg cacagccacg acgcgatcac gaacagcagg
     1021 atgctcgcgc cgaagaggcg cacctgaccg aagcgctgcg tcaaccagcc ggtgagcggc
     1081 accgagatcg cattcgcgac cgcgaacgag gtgatgaccc aggtgccctg cgaggggctc
     1141 acgcccatgt cgccggcgat cgccgggatc gacacgttgg cgatcgagct gtcgagcacg
     1201 ttcatgaagg tcgcgagcga gagcgcaaag gtgccgagga ccagctggcc gccgcgcaac
     1261 ggcggataca cgacccccgg tcgcaccggt gccggcgccg ccgccggact cgccgcgaga
     1321 gcgttcgagg aagccatgcg cgggggagtc gcgacgatca gcgcgcgtgc gctaccaccg
     1381 cggccgaagg cgccagcgcc gacgaccggc gcggcgccgc aagcggcgca ctggcgaccg
     1441 gggcggtctc cgaccgtgcc ccggcgacgg ggccggcgtt gaccgggcgg ccgaggttcg
     1501 cgctgatgat cttgcggact tcgctgtcgg cctgctggtt gacctggtcg aacaccgcgg
     1561 tctgcgtggc gacgctgcga tgcgaggcat cggcgagcat cttgccgtcg atgttggcga
     1621 cgtcgacctt cgcatccatc gagaggccga cgcgcaacgg atggctcgcg acttccctct
     1681 gatcgagggc gattcgcacc ggcacgcgct gcacgacctt gatccagttg ccggtcgcgt
     1741 tctgcgccgg caacagcgcg aacgccgcgc cggtgccggc gcccagaccc tcgaccgtgc
     1801 cgtggtattc gaccttcttg ccgtacacgt cggcctcgag cgtgaccggc tggccgatgc
     1861 gcaggcgccc caactggctt tccttgaagt tggcgtcgac ccagacctgg tcgagcgcga
     1921 cgaccgacat caatgtcgcg ccggcctgca cgcgctgacc gagctgcacg ctgcgccggg
     1981 ccacatagcc gtcgacgggc gagagcaggt cggcgcgcgc caggccgaga taggcctcgc
     2041 gcacccgcgc cgccgcacgc agcacgttcg ggtgctgatc gaccgaaacg ccctgcgtga
     2101 gggcctggtt cgaggcgagc tgttcgcgcg ccgcgagcac gcccgactgc gcggccgaca
     2161 acacgctgcg ggccacggcg agctgcgacg tgacatggtc gaactcttcc ttgccgaccg
     2221 caccggtgcg aaccagcggc tcgcgccgcg tcacgtcgtc ctgcgcgcgg gcgacttcgc
     2281 tgcgggcgcg ggcgaggtcg gcctcgcggc tcgcgatctg cgcttgccag gcgccgttgt
     2341 tgacgaagag cgtgcgcgcc tcgcgcacgg tctggccgag ctgcgcttcg gcctggtcga
     2401 gggcgacgcg ggcatcggcc ggatcgagcc tgacgagaag ctggccggcc ttgacgaaat
     2461 cggtgtcgtc ggcatcgatc gcgaccaccg tgccgccgac ctgcggcgtc aactgcacga
     2521 cgttgccctg cacataggcg ttgtcggtgc tctcatagtg attgagcacc agcgcgtaat
     2581 aggcgccata ggccaggccg gccaggacca ccagggcagt cacgccgagc aatgcgcgct
     2641 tgcgcgtccg gttgccgcgc gggccggcgg ctgccgcgac ggggttcgac gcggcgggcg
     2701 ctgcgggcgc atcggccagc gtaccttctc gggcattcat caacggtctc cggaaatctc
     2761 tcgcatgtcg gggtctgatc aacggctggt ctgcgccgtc ctgcgcagcg cgacgtcgcg
     2821 atcggggaag tcgccggcgt agccaccgcc gagcgcgcga atcagcacga actgcgactc
     2881 gaggacacgc gcctcgaggt cggcgcccga acgccgctgg ttcagcaccg tcgcttcggc
     2941 ggtgagcacc gtgaggtagg tgccgagccc ggccttgtag cgttgcgtcg ccagatcgta
     3001 gcccgactcg gcggccgcct gagcgagccc ctgctcgcgg cgctggcgct cgatcgactg
     3061 cagcgacgag atctggtcgg ccacatcgcg cacggcctcg acgacggtgc cgttgtaggt
     3121 ctcgacggcg aggtcgagat cggcggcccg gccgcgcaga ttggcgcgca ggcgcccggc
     3181 atcgaagatc ggcaggtgga tcgccggccc tgcgccgtat tgcgcgctgc ccgagcgcag
     3241 caggcggtcg aggccgatgc tcgacaggcc gacgaacgcg ctcaggttga tgttcggata
     3301 gaactgcgcg cgcgccgccg ccacgtcgtc ggtcgcggcc tcgatgcgcc agcgcgcggc
     3361 agcgatgtcg gggcgacgcc cgagcagatc tgccggcaat gcggccggca gcgcagcgat
     3421 ccgcacgccg cccaggcgcg gggcgagcgc gtcgagcgcg ccgggcggct gaacgatgag
     3481 cgcagccagc gcgtggcgcg tgagcacgat ctgttcgtcg aaggcttcga tctgctggcg
     3541 cgtttcgggc aacgcgcctt caccctggcg cagctcgaca ttggtgtcga ggccggcctg
     3601 cacgcgctgg cggatcaggc cgaggaactc gtcgcgctgg gccagcgaac gcgtcgcgat
     3661 cgcgcgctgc tcgaccagcc gcgccagttg cacataggtg cgcgcgacgt tgctggcgag
     3721 gagcacgcgc gccgcctggc cgtcggcttc ggcggcgcgc tcggcgccga tcgcggcatc
     3781 gagcgcggcg cgattgcggc cgaaaagatc gagatcccac gagcctgcgg cctgcaacgt
     3841 gccggtatcg cgggtcgagc cggccagcgg cggcgggtag aggccgttgg cggtgaagcg
     3901 ctggtgtgtc agttcgagcg aaccgttgag ttgcggcgcc tgcgccgcat ccgcggcgct
     3961 cgcgctggct gcggcccgct cgacgcgcgc caggctcgcc ttgagggtcg gattgtcggc
     4021 cagcgcccgt tcgatcagcg ctgagaggac cggatcgccg aagccgagcc accagtccgg
     4081 ggcgagcccc ggcgcttgcg cggccggttc cgaaacaccg acccgggccg gcgcgatcat
     4141 cgtcgcctgc ggtgcaatgg cgcccgggtt ggcgcagccg gcgaaggtca tcacgagagt
     4201 cgaggcgacc gcgatcagga aggcggcgag cgtcggcaga cgccgcttgg cgcattcgag
     4261 cggacgcccg cagtcgtcgg gaatcccgac ttcagtggcg cgcaagaccc tgtccgcttt
     4321 catgatgtct cactcgtctg gttgattggg ccggtcgcac gcggagtgcc cgcgcagcgc
     4381 gcatcgcggc aggtctcggc gttgtcgagc atgcgttgca gaaagccctt cagggtttgc
     4441 cattcggcct tcgaaaagcc ggccagatgc gcattcatga cctgggcgag cgccacgggc
     4501 accttgtcgg ccgctttgcg gccttcgggc gtcaacgcga ggttgacgac ccggcggtcg
     4561 tcggtcgagc gcacgcgctt gcacaagccc ttggcctcga gcctgtcgag caggcgcgtc
     4621 atcgcgcccg ggtccatct
//
LOCUS       DASVHM010000501         4707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1336685, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000501 DASVHM010000000
VERSION     DASVHM010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4707
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1336685"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1059)
                     /locus_tag="VF308_09425"
     CDS             complement(<1..1059)
                     /locus_tag="VF308_09425"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX7436917.1"
                     /translation="MESTSLERPAPASRMAGVLASVRHGLIAYARWLDSISWKRFSLL
                     SVLAMIAAGMLSQLPPFSIEWGGSRRVETTTASKDAKPKSPVVIDAGKDGVKHRRRSY
                     NIDIDKDGVHITPAAPAASAAAPPLAPTASGPGVHIKLPDNVDTEEVTRAIEEAQTEI
                     EDRIAESRTRVVHEEGFTPGEHLPQFTFLLIVLSVVTKIMAAGRFKAEAKAVVATEIA
                     ESETLKRQVVEARMAAMQAQVEPHFLFNTLASIDHLIETDPRRASQMQKNLIALLRAS
                     MPAMREAHPTAHNLGREMAVIRPYLEILKVRMEDRLQIDVDVPEGLLSAEFPSMMIQS
                     LVENAIKHGLEPKAEGGRL"
     gene            complement(1185..1889)
                     /gene="aqpZ"
                     /locus_tag="VF308_09430"
     CDS             complement(1185..1889)
                     /gene="aqpZ"
                     /locus_tag="VF308_09430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006751070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015250 - water channel activity [Evidence
                     IEA];
                     GO_process: GO:0006833 - water transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HEX7436918.1"
                     /translation="MLGGCGSAVIAAAFAHVGIGLVGVAFAFGLTVLTMAYALGHVSG
                     CHLNPAVSLGLVVGGRFKAADLVPYMLAQVAGAIAGAGVLYLIASGKAGFDLQAGFAS
                     NGYAEHSPGGYSMVAALVAEFAMTFMFLVIILGATDERAPSGFAPIAIGLGLTLIHLI
                     SIPVTNTSVNPARSTGPAVFVGGWAVSQLWLFWVAPLLGAACAGVAYRMVSGERSKAA
                     GIEGPADPSPLERSRT"
     gene            2120..2662
                     /locus_tag="VF308_09435"
     CDS             2120..2662
                     /locus_tag="VF308_09435"
                     /inference="COORDINATES: protein motif:HMM:NF016255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ProQ/FinO family protein"
                     /protein_id="HEX7436919.1"
                     /translation="MSSTEPLPRQADCAQQLRQLWPALFAGAPKPLKLRIQLDIQERA
                     PGTFTKPALSAFFRRYTGSTSYLQAVAHGKQRFDLDGQPSGEISDEHRQAARDELARR
                     RANQEQRRALEEEQRHNRARLLHDYERTTLTRANFCALKQVAEAELDGLLEIARQEAA
                     QRRAPEHPGPRKGSVVPRRP"
     gene            2692..3840
                     /locus_tag="VF308_09440"
     CDS             2692..3840
                     /locus_tag="VF308_09440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013801539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7436920.1"
                     /translation="MALQFKRSWSDEDLERYRDSVARFIEAEMLPQDAEARRRGHVGH
                     AIWRQAGELGFLCADIPQAYGGGGGDFRHGAVFYEETARRGLTGMSTSVHSIVAHYLL
                     NHGTEEQKRRYLPPLARGELVGAIAMTEPGAGSDLQGVRTRAERREGHYVINGSKTFI
                     TNGFLAGVVLVVCKTDPAQGARGTSILIVETQGCAGFRVGRVLDKIGMKAQDTSELFF
                     DDVQVPAQNLLGGKEGQGFFQLMGDLPYERLIIGVAALACMEGAYEATLAYVRERQAF
                     GQPIANFQNTRFKLAEVATQITVGRAFIDRCVEQIVAGTLDTATASMAKLWGSEAQGR
                     VLDELLQLYGGYGYMNEYMIARMYADARVQRIYGGTSEIMKEVIARVL"
     gene            complement(3888..4196)
                     /locus_tag="VF308_09445"
     CDS             complement(3888..4196)
                     /locus_tag="VF308_09445"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEX7436921.1"
                     /translation="MDSRDQDGVLESWLVRVCGRVQGIGYREACVNRARALGATGWVR
                     NRMDESVEVMLQGSPEQLAEMCSGLREGMPAALVDDLEVTQVQPPFPRFEHFGRLPTL
                     "
     gene            complement(4229..>4707)
                     /locus_tag="VF308_09450"
     CDS             complement(4229..>4707)
                     /locus_tag="VF308_09450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007860362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF6537 domain-containing protein"
                     /protein_id="HEX7436922.1"
                     /translation="AYKDEYEVARLYTDGSFRRRLAAQFEGDYTVNYHLAPPLTAKRN
                     EKGELVKQKFGPWMLTGFKVLAKLKGLRGTAFDIFGRTEERKTERALIGEYRASIEEL
                     LRTLSAANLPLAVEVARIPEEIRGYGHVKERHLAAARPKWAALMAEWRAGGERIAA"
BASE COUNT          772 a         1600 c         1617 g          718 t
ORIGIN      
        1 aagcctgccg ccttcggcct tcggctcgag cccgtgcttg atggcgttct cgaccagcga
       61 ctggatcatc atcgacggga actcggccga gagcaggcct tcgggaacgt cgacgtcgat
      121 ctgcaggcgg tcttccatcc gaaccttcag gatttcgaga tacggcctga tcaccgccat
      181 ttcgcggccg aggttgtgcg ccgtcgggtg cgcctcgcgc atcgccggca tcgaggcgcg
      241 cagcagcgcg atcaggttct tctgcatctg gctcgcgcgg cgcgggtcgg tctcgatcag
      301 gtggtcgatc gaggccagtg tgttgaagag gaaatgcggt tcgacctggg cctgcatcgc
      361 cgccatgcgc gcctcgacga cctggcgctt gagggtttcc gattcggcga tctcggtcgc
      421 cacgaccgcc ttggcctcgg ccttgaagcg gcccgccgcc atgatcttcg tgaccaccga
      481 cagcacgatc agcaggaacg tgaactgcgg caggtgctcg ccgggagtga aaccctcttc
      541 gtgcacgacg cgggtccggc tctcggcgat cctgtcctcg atctccgtct gcgcctcctc
      601 gatcgcacgg gtgacctctt cggtgtcgac gttgtcgggc agcttgatgt gaacgcccgg
      661 accgctcgcg gtcggtgcga ggggtggcgc cgccgcggaa gcggccggcg ccgccggcgt
      721 gatgtggacg ccgtccttgt cgatgtcgat gttgtaggac cgtctgcggt gcttgacacc
      781 gtccttgccg gcgtcgatca cgaccgggct cttcggcttg gcatccttcg acgccgtcgt
      841 ggtttcgacc cggcggctgc cgccccattc gatgctgaat ggaggcaatt gcgacagcat
      901 gccggcggcg atcatcgcca gcaccgacag cagggaaaat cgcttccagc tgatgctgtc
      961 gagccagcgc gcatacgcga tcaggccgtg ccggacggag gcgagcacgc cggccatccg
     1021 cgaagcgggt gcgggacgct cgagactcgt tgattccatg cggccactgt aaggggccgc
     1081 gacggcgccc cacaaggcgg cgccgacaga ctgccgggcc gggcggacag tctgcgctgg
     1141 cgcgggacgg ccagttgcac ccgcccggtt gcggcgcgaa gccgctaggt gcggctgcgc
     1201 tcgagcggac tcgggtcggc ggggccttcg atccctgccg ccttgctgcg ttcgccgctc
     1261 accatgcggt acgcgacccc ggcgcatgcc gcgccgagga gcggggccac ccagaagagc
     1321 cacaactgcg aaaccgccca cccaccgacg aacacggccg ggcccgtgct gcgggccgga
     1381 ttcaccgagg tgttggtgac cgggatgctg atcaggtgga tgagcgtcag cccgaggccg
     1441 atggcgatcg gcgcgaagcc gctcggtgcc cgttcatcgg ttgcgccgag gatgatgacg
     1501 aggaacatga aggtcatcgc gaactccgcg acgagcgcag cgaccatcga gtagccgccc
     1561 ggcgaatgct cggcgtagcc gttcgatgcg aagccggctt gcagatcgaa ccccgccttg
     1621 ccgctcgcga tgaggtagag aacgcccgcg ccggcgatgg ccccggccac ctgcgccagc
     1681 atgtagggga cgaggtcggc tgccttgaag cggccgccga cgacgaggcc gagcgagacg
     1741 gccggattga gatggcagcc cgagacgtgg ccgagcgcat aggccatcgt gaggacggtc
     1801 aggccgaaag cgaacgcgac gccgaccagg ccgatgccga cgtgggcgaa tgcggcggcg
     1861 atcacggcgc tgccgcagcc tccgagcacg agtcacaggg tgccgaggaa ttcggcggcg
     1921 aggcgattgg aaagaggcat gtcgattcct cccggggggt tgatccgtcg gcggggacgc
     1981 acggacacga gtctagctac gcgcaaaggc gcgaatcggg ggccggcgcg gcgcggcccg
     2041 gctcgtaccc gcggccaagc tcgggttgag gcgccttgca ccggcacaat ctggccttct
     2101 cccgcacgcc gcatcgccca tgtcatcgac cgaacccttg cctcggcagg ccgactgcgc
     2161 gcagcagctc aggcagctct ggccggcgct gttcgccggc gcgccgaagc cgctcaagtt
     2221 gcgcattcag ctcgacatcc aggagcgcgc gcccggcacc ttcacgaagc cggcgctctc
     2281 ggccttcttc cgccgctaca ccggcagcac ctcatacctg caggcggtcg cgcacggcaa
     2341 gcagcgcttc gacctcgacg gccagccgag cggggagatc agcgacgagc accgccaggc
     2401 cgcccgcgac gagctcgccc ggcgccgggc caaccaggag caacgccgcg cgctcgagga
     2461 agagcagcgg cacaaccgcg ccaggctgct gcacgactac gagcgcacga ccctgacccg
     2521 ggccaacttc tgcgcgctga agcaagtggc cgaagcagag ctcgacgggc tgctcgagat
     2581 cgcgaggcag gaggccgcgc agcgtcgggc gccggagcac ccgggtccgc gcaagggaag
     2641 cgtcgttccg agacgcccct agaccgaccg gacattcgaa ggggacagcc gatggccctg
     2701 caattcaagc gctcgtggag cgacgaagac ctggaacgct accgcgattc ggtggcgcgc
     2761 ttcatcgagg ccgagatgct gccccaggac gccgaggcgc gacggcgcgg ccatgtcggc
     2821 catgcgatct ggcgccaggc cggagaactc ggcttcttgt gcgcagacat cccgcaggcc
     2881 tacggtggcg gcggcggcga ttttcggcac ggggcggtgt tctacgagga gacggcgcgc
     2941 cgcggcctga ccggcatgtc gacctcggtg cattcgatcg tcgcccacta cttactcaac
     3001 cacggcaccg aagaacagaa gcggcgctac ctgccgccgc tggcgcgcgg cgagctggtc
     3061 ggcgcgatcg cgatgaccga gcccggtgcc ggctccgacc tgcagggcgt tcgaacccgc
     3121 gcggagcggc gcgaaggcca ctacgtcatc aacggcagca agaccttcat caccaacggc
     3181 tttctcgccg gcgtcgtgct ggtggtctgc aagaccgacc ctgcacaagg cgcgcgcggc
     3241 acgtcgatcc tgatcgtcga gacgcaaggc tgcgcgggct ttcgcgtcgg acgggtgctc
     3301 gacaagatcg gcatgaaggc acaggacacc tcggagctct tcttcgacga cgtccaggtg
     3361 ccggcgcaga acctgctcgg cggcaaggaa ggccagggct tcttccagct gatgggtgac
     3421 ctgccgtacg agcggctcat catcggcgtg gcggcgctcg cctgcatgga aggcgcctac
     3481 gaagcgacgc tcgcgtacgt gcgcgagcgc caagccttcg gacagccgat cgcgaacttc
     3541 cagaacaccc ggttcaagct cgccgaggtg gcgacgcaga tcacggtcgg gcgcgcattc
     3601 atcgaccgct gcgtcgagca gatcgtggcc ggcacgctag acaccgctac cgcgtcgatg
     3661 gccaagctgt ggggttcgga ggcccaggga cgcgtgctcg acgagctgct ccagctgtac
     3721 ggcggctacg gctacatgaa cgagtacatg atcgcccgca tgtacgccga cgcgcgcgtg
     3781 cagcgcatct acggcggcac cagcgagatc atgaaggaag tgatcgcgcg cgtgctgtag
     3841 acgaggtcga ggaagctcgt tcgttcacca ccgcgagttg cttgctctta caaggtgggc
     3901 aagcggccga agtgttcgaa gcgaggaaac ggcggctgca cctgcgtcac ttcaaggtcg
     3961 tcgacaagtg ccgcgggcat gccttcgcgc agcccgctgc acatctccgc aagctgctcc
     4021 ggcgaaccct gcagcatcac ctctaccgac tcgtccatgc ggttgcggac ccagccggtg
     4081 gcgcccagcg cccgcgcgcg gtttacgcaa gcttcccgat agccgatgcc ttggacgcgg
     4141 ccgcataccc gcaccagcca actctcgagc accccatctt ggtcgcgaga atccatgcgc
     4201 gcagtcctgg cgcggccggt cgcttcgatc aggcggcgat gcgctcgccg cccgcgcgcc
     4261 attcagccat gagcgcagcc cacttcgggc gcgccgctgc gaggtggcgc tccttcacgt
     4321 ggccgtagcc gcggatctct tccgggatgc gcgcgacctc gaccgcgagc ggcaggttcg
     4381 cggcgctgag cgtgcgcagc agctcctcga tcgaggcgcg gtactcgccg atcagggcgc
     4441 gctcggtctt gcgctcctcg gtgcggccga agatgtcgaa ggcggtgccg cgcaggccct
     4501 tcaacttcgc cagcaccttg aagccggtga gcatccaagg gccgaacttc tgcttcacga
     4561 gttcgccctt ctcgttcctc ttcgcggtca gcggcggcgc gaggtggtag ttgacggtgt
     4621 agtcgccctc gaactgcgcc gcgaggcggc ggcggaagct tccatcggta tagagccgcg
     4681 cgacctcgta ctcgtccttg taggcca
//
LOCUS       DASVHM010000502         1890 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_829238, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000502 DASVHM010000000
VERSION     DASVHM010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_829238"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..1115
                     /gene="paaA"
                     /locus_tag="VF308_09455"
     CDS             105..1115
                     /gene="paaA"
                     /locus_tag="VF308_09455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaA"
                     /protein_id="HEX7436923.1"
                     /translation="MYTQAMDTIGKDRDEVPKAVRSADEVARRAAFDARIDAGDFIEA
                     KDWMPEHYRKTLVRQISQHAHSEIVGMLPEGNWISRAPTLKRKAILLAKVQDEAGHGL
                     YLYAAAETLGTSRDQLFDALHSGKAKYSSIFNYPTLTWADMGTIGWLVDGAAIMNQVP
                     LCRCSYAPYARAMVRICREESFHQRQGFESLLTMMSHGSDAQKAMVQDAVDRWWWPSI
                     MMFGPPDAESPNSEQSMKWGIKRISNDDLRQKFIDATAEQAKILGVTLPDPALRWNEA
                     RDHYDFGAIDWKEFWQVVGGDGPCNRERLAARVKAWDDGAWVREAALAHAAKQAPLRE
                     AA"
     gene            1112..1462
                     /gene="paaB"
                     /locus_tag="VF308_09460"
     CDS             1112..1462
                     /gene="paaB"
                     /locus_tag="VF308_09460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019654318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaB"
                     /protein_id="HEX7436924.1"
                     /translation="MSPVIPPDALPGPPAEPIDHRAKKAEWPLWEVFVRSKAGLDHKH
                     CGSLHAADPQMAIQLARDVYTRRQEGTSIWVIRSDQITASDPGEKSSYFDPMEDKVYR
                     HPTFYELPKSLDHM"
     gene            1471..>1890
                     /gene="paaC"
                     /locus_tag="VF308_09465"
     CDS             1471..>1890
                     /gene="paaC"
                     /locus_tag="VF308_09465"
                     /EC_number="1.14.13.149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019654319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaC"
                     /protein_id="HEX7436925.1"
                     /translation="MQSITVSSHPSVQYLLRIGDTCLILAQRLAEWCGHAPIVEEDIA
                     LTNMALDLIGQARAVLTRAGQLEAELGGTAHDEDQLAFLREERDFLNLTLVELPRGDF
                     AQTVLRNFVLATFLKLLWQRLLGSGDAELAAIAGKAVK"
BASE COUNT          341 a          657 c          632 g          260 t
ORIGIN      
        1 gacggcggtg agcgtcggtc tgcctgacac gctcgagcgc acactcgtcg gcaaggcccg
       61 gcgcgtcatc gatcggcgca agaactagac gacaagggat tgccatgtac acgcaagcaa
      121 tggacacgat aggcaaggac cgcgacgagg tgccgaaggc ggtccgctcg gccgacgagg
      181 tcgcgcgccg ggcggcgttc gacgcccgca tcgacgccgg cgacttcatc gaggccaagg
      241 actggatgcc cgagcactac cgcaagacgc tggtgcgcca gatcagccag cacgcgcact
      301 ccgagatcgt cggcatgctg cccgagggca actggatcag ccgcgcgccg acgctcaagc
      361 gcaaggcgat cctgctcgcc aaggtgcagg acgaagccgg ccacggcctc tatctctacg
      421 ccgccgcgga gacgctcggc acctcgcgcg accagctgtt cgacgcgctc cattcgggca
      481 aggcgaagta cagctcgatc ttcaactacc cgacgctgac ctgggccgac atgggaacga
      541 tcggctggct cgtcgacggc gcggcgatca tgaaccaggt gccgctctgc cgctgctcgt
      601 acgcgccgta cgcgcgggcg atggtccgca tctgccgcga ggaatcgttc caccagcgcc
      661 agggcttcga gtcgctgctg acgatgatga gccacggcag cgacgcgcag aaggcgatgg
      721 tccaggacgc cgtcgatcgc tggtggtggc cgagcatcat gatgttcggc ccgcccgacg
      781 ccgagtcgcc caactccgag cagtcgatga agtggggaat caagcggatc agcaacgacg
      841 acctgcgcca gaagttcatc gacgcgaccg ccgagcaggc caagatcctc ggcgtgacgc
      901 tgcccgatcc cgcgctgcgc tggaacgagg cgcgcgacca ctacgacttc ggcgcgatcg
      961 actggaagga gttctggcag gtcgtcggcg gcgacgggcc gtgcaaccgc gagcgtctcg
     1021 cggcgcgagt caaggcgtgg gacgacggcg cttgggttcg cgaggcggcg ctcgcgcacg
     1081 ccgcgaagca agcgccgttg cgggaggcgg catgagcccc gtcatcccgc cggacgcgtt
     1141 gcccggcccg ccggccgagc cgatcgatca ccgcgcgaag aaggccgagt ggccgctctg
     1201 ggaagtcttc gtccgcagca aggccggcct cgatcacaag cactgcggca gcctgcacgc
     1261 ggccgacccg cagatggcga tccagctcgc gcgcgacgtc tacacgcggc gccaggaggg
     1321 caccagcatc tgggtcatcc gctccgacca gatcacggcg agcgacccgg gcgagaagtc
     1381 gtcgtacttc gacccgatgg aagacaaggt ctaccgccac ccgacgttct acgagctgcc
     1441 caagtcgctc gaccacatgt gaggacggga atgcaatcga tcaccgtctc gtcgcatcct
     1501 tcggtgcagt acctgctgcg catcggcgat acctgcctga tcctggcgca gcgcctggcc
     1561 gagtggtgcg gccacgcgcc gatcgtcgag gaagacatcg ccctcaccaa catggcgctc
     1621 gacctcatcg gccaagcccg cgccgtgctc actcgcgccg gccagctcga ggccgaactc
     1681 ggcggcacgg cgcacgacga ggaccagctc gccttcctgc gcgaggagcg cgacttcctc
     1741 aacctgacgc tggtcgagct gccgcgcggc gacttcgcgc agacggtgct gcgcaacttc
     1801 gtccttgcga cgttcctgaa gctgctctgg caacggctcc tcggctccgg cgatgcagaa
     1861 ctcgcggcga tcgccggcaa ggccgtgaag
//
LOCUS       DASVHM010000503         4619 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_252168, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000503 DASVHM010000000
VERSION     DASVHM010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4619
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252168"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2404
                     /locus_tag="VF308_09470"
     CDS             <1..2404
                     /locus_tag="VF308_09470"
                     /inference="COORDINATES: protein motif:HMM:NF037374.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YDG domain-containing protein"
                     /protein_id="HEX7436926.1"
                     /translation="GIVSAGSLTIDGAPGFSVPNSVDLSFSNNKIGALTVNAGDVNLH
                     VGNAPGVPLVLSGTVPFSFNLVANNTSVTQNLGPTGALTIGAGEGRFNITTVGSGDVT
                     LNNPANQFLAGMTFTTAGNVNVAASGDFDADGSATGNVLIKASGIFFLSSPISGQNID
                     ISGAGFQDFSGATLIVPAGGRFLVRSSDFTQDSFAGGSIAFGPGAGNINYIVYGGFSG
                     TDPASGNGFYTNQTGSIVVPNTDATAVSKVYDGSPNFAYAQSGTPGSAFVDNPLPTLK
                     EAISSYSLTSTGAFTDKNAGVNKGHTIAATNNTQALGASSGVALYGLSFAGFTRAPGV
                     HVPGTPGSAISQITPKAITSSGIDGIDRVYDATTVVGLNTSAATLNGVVAGDTVSLVF
                     GGASGTMANKNVGVNKAVAVNGLALGGADAGNYTVSETSGATATITPKAITSVGFTGV
                     GRVYDGTTAVAVNGSGASLASVIGGDAVGLNTGGVTGSVGNKNVGVGKPVAIAGVAIN
                     GVDAGNYTVSDASNATVTITQRPITSTGISGVDRTYDGTTAVGVNAGAATLNNTIAGD
                     NVALVSAAATGTLADKNAGLAKPVTVNGLALGGTDAPNYSLTDASNATANIAQLVLQA
                     SGITATDHVFSGSTTVALNTSGATVVGVLPGDTVGVDASGAVGSVATPDPGAAKPVTV
                     TGITLTGPDAIDYSVSPTPIGASGGGLTVRILSIDQGRFDDIRFKEYLQGVSDAQEPF
                     RRAMLEALLSGFGKENIRKQLQRGLVFETGLAPPAVDIIESAKPPEPCTPASGAGLSC
                     GR"
     gene            2394..3773
                     /locus_tag="VF308_09475"
     CDS             2394..3773
                     /locus_tag="VF308_09475"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HEX7436927.1"
                     /translation="MAADGVVGAGFGRRRLLQSALGAIAALVWPLRAQAQASPKGYAL
                     LVGNTSYNPAEENLPPAQKCIRDLEPQLRRFGFEVVTFHDVPVAQLQSEVTKLQRAVA
                     SNPSMPAVFYFVGHGFQSNAENFLVPAGSDLNAVPAQLSKACISLEREIFTRLQRPAG
                     PAATVIMVDACRTPDRPRSPGEGYNQTLPPEGCHVAFATGPGKRAFAPNDPQRDTLFA
                     EVLVAELTGSLPDRSILLTLESVRAKVASRVNAIPTIVRVFGPNAQEPELASNVTGDP
                     TWAPGASVPAPALPEASPSTASVDLAAVRAIESPEEAADRLRALLQKTPDGDVADIAR
                     LRLRDLETVLRAARTARLDPDASRLSANRSPRVVEDIRRALQGDKYAALRVAETLPQP
                     SAGGELIERTDYGRWMIFAANLGNGIAAYRLSLYFRNVDRRDAEASRYLALARAAQYT
                     PPRQLESGR"
     gene            4168..>4619
                     /locus_tag="VF308_09480"
     CDS             4168..>4619
                     /locus_tag="VF308_09480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4372 domain-containing protein"
                     /protein_id="HEX7436928.1"
                     /translation="MNVGKTLFAQVMEFVPWKTFGRIVERHKGDAGVRTMGCADLFRV
                     MAFAQLTWRESLRDIEACLAANQGKLFHMGRKAPPALSTLSDALNQRDWRISHELAQR
                     LIARARTLYAQEPSLLDLDASVYALDSTTIDLCLSLFEWAPFRSGLGR"
BASE COUNT          805 a         1585 c         1491 g          738 t
ORIGIN      
        1 cggcatcgtt tctgccggat cgctaacgat cgatggagcg cccggcttca gcgttcccaa
       61 ttcggtggat ctcagcttct cgaacaacaa gattggcgcg ctcaccgtca atgccggcga
      121 cgtcaacctc cacgtcggca atgcacctgg cgtgccgctc gtgctgagcg ggacggtgcc
      181 tttcagcttc aatctcgtcg ccaataacac gagcgtgacg cagaacctgg ggccgacggg
      241 cgcgctcacg atcggtgccg gcgaagggcg cttcaacatc acgaccgtgg gcagcggcga
      301 cgtcacgctg aacaacccgg cgaaccagtt cctcgctggc atgaccttca ccaccgcggg
      361 caacgtcaat gtcgccgcgt ccggcgattt cgacgcggac ggatcggcga ccggcaacgt
      421 cctgatcaag gccagcggta tcttcttcct ctcgagcccg atcagcgggc agaacatcga
      481 catttcgggc gccggcttcc aggatttcag tggcgccacg ctgatcgtgc cggccggcgg
      541 gcgcttcttg gtccgctcga gcgacttcac gcaggacagc ttcgccggcg ggtcgatcgc
      601 ctttggaccc ggcgccggca atatcaacta catcgtctac ggcggattca gcggcaccga
      661 tccggcgagc ggcaacggct tctacacgaa ccagaccgga tcgatcgtcg tgcccaacac
      721 cgatgccacg gcggtgagca aggtctacga cggctcgccg aacttcgcgt acgcgcaatc
      781 cgggacgccg ggctcggcct tcgtcgacaa ccctttgccg acgctgaagg aggcgatcag
      841 ctcctactcg ctgacgagca ccggcgcgtt caccgacaag aacgccggcg taaacaaggg
      901 ccatacgatc gccgcgacga acaacacgca ggccctcggc gcgagctccg gcgtcgcctt
      961 gtacggcctg tccttcgccg gcttcacgcg ggcgcccggc gtgcacgttc ccggcacgcc
     1021 cggcagcgcg atctcgcaga tcacgccgaa ggcaatcacc tcgtcgggca tcgacggcat
     1081 cgatcgtgtc tacgacgcga cgaccgtggt cggcctgaac acgtcggcgg cgacgctgaa
     1141 cggtgtcgtc gccggcgata ccgtgagcct cgtcttcggc ggcgcgagcg gcacgatggc
     1201 gaacaagaac gtcggcgtga acaaggccgt ggcagtcaat ggcctggcgc tcggtggcgc
     1261 cgacgccggc aactacacgg tcagcgagac gagcggcgcc acggcgacga tcacgccgaa
     1321 ggcgatcacc tcggtcggct tcactggtgt cggccgcgtc tacgacggca cgacagctgt
     1381 cgccgtcaac ggcagcggcg cttcgctggc gagcgtgatc ggcggcgacg cggtcgggct
     1441 caatacgggc ggcgtgaccg gctcggtcgg caacaagaac gtcggcgtgg gcaagcccgt
     1501 cgccatcgcc ggcgtcgcaa tcaacggcgt cgatgcgggc aactacacgg tcagcgacgc
     1561 gagcaacgcc acggtgacga tcacgcagcg gccgatcacc tcgactggga tcagcggtgt
     1621 cgatcgcacc tacgacggca cgacggcagt cggcgtgaac gccggtgcgg cgacgctcaa
     1681 caacacgatt gccggcgaca atgtcgcgct cgtatccgct gcggcgacgg gcacgctcgc
     1741 cgacaagaac gccggcctcg ccaagccggt gacggtgaac ggcctcgcgc tcggcggcac
     1801 cgatgctccg aactacagcc tcaccgacgc gagcaacgcc accgccaaca tcgcccagct
     1861 ggtgttgcag gcgagcggca tcacggccac cgatcatgtc ttcagcggca gcacgacggt
     1921 cgcgctcaac acgagcggcg ccaccgtggt cggtgtgctg ccgggagaca ccgtgggcgt
     1981 cgatgcgagc ggcgcggtcg gttccgttgc aacaccggac ccgggcgcgg ccaagcccgt
     2041 caccgtcacc ggcatcacgc tgaccgggcc cgacgcgatc gactattcgg tctcgccgac
     2101 gccaatcggc gcttccggcg gcggcctgac ggttcgcatc ctcagcatcg accagggccg
     2161 cttcgacgac atccgtttca aggaatattt gcagggcgtg agcgacgcgc aagagccgtt
     2221 ccgccgcgcg atgttggagg cgttgctctc cggcttcggc aaggagaaca tcaggaagca
     2281 attgcagcgc ggcctcgtct tcgaaacagg cctcgcgccg ccggccgtcg acatcatcga
     2341 atcggcgaag cctcccgagc cttgcacacc ggccagcggc gccggcctga gttgtggccg
     2401 ctgacggcgt ggtaggcgcg ggattcggcc ggcgccggct gctgcaatcg gcactcggtg
     2461 cgatcgctgc gctggtctgg ccgctgcgcg cgcaagccca ggcgtcgccg aagggctacg
     2521 cgcttctcgt cggcaatacc tcctacaacc cggccgagga gaacctgccg ccggcgcaaa
     2581 agtgcatccg cgatctcgag ccgcagctcc ggcgcttcgg cttcgaggtc gtcacgtttc
     2641 acgacgtgcc ggtggcgcag ctgcagtccg aggtgacgaa attgcagcgc gccgtcgcgt
     2701 ccaacccgag catgcccgcg gtgttctatt tcgtcggcca cggctttcag tcgaacgcgg
     2761 agaacttcct ggtccccgcc gggagcgacc tgaacgccgt cccggcgcag ctctcgaagg
     2821 cctgcatctc actcgagcgc gagatcttca cccggctgca gcgcccggcg ggcccggccg
     2881 cgaccgtcat catggtcgac gcttgccgta cgccggatag gccgcgctcg ccgggcgagg
     2941 gctacaacca gaccttgccg cccgaaggct gccacgtcgc cttcgccacc gggcccggca
     3001 agcgcgcctt cgctccgaac gacccgcagc gcgacaccct gtttgccgag gtactggtcg
     3061 ccgaactgac aggctcgctt cccgatcgtt ctatcctgct caccctcgaa agcgtgcgcg
     3121 ccaaggtagc cagtcgcgtg aatgcaattc cgaccatcgt ccgggtcttc ggccccaacg
     3181 cccaggagcc cgagctcgcc tcgaacgtca caggtgatcc tacctgggcg cccggcgcgt
     3241 ccgtgcccgc gcccgcgttg cccgaggcgt cgccatccac cgctagcgtc gaccttgcgg
     3301 cggtgcgcgc gatcgaatct cccgaggagg ccgccgaccg cctgagggcg ctgctgcaga
     3361 agacgccaga tggcgatgtg gcggacattg cccgtcttcg cctcagggat ctcgaaacgg
     3421 tgctgcgcgc ggcacgaacg gcacgcttgg acccggacgc ctccaggctt tcggcgaatc
     3481 gctcgccccg cgtggttgaa gatatccgcc gcgctctgca gggtgacaag tacgccgcgc
     3541 ttcgtgtcgc cgagacgttg ccgcagccca gcgcaggggg cgagctcatc gaacgcacgg
     3601 actacggccg atggatgatc ttcgccgcaa accttggcaa tggcattgcc gcgtaccggc
     3661 ttagcctgta ctttcgaaac gtcgatcggc gcgatgccga ggcttcccgc tatctcgcgc
     3721 tggctcgcgc cgcccagtac acaccgcccc gacagctcga atcggggcgc tgacggccaa
     3781 gtaccgcgct ccagcccgag acatcagggg acaagaaaaa gccccgctct cagaggagaa
     3841 gcggggcttt cgtggttgcc tggggactgc cgaagacact caactggcgg agccggaggg
     3901 agtcataaat caagcatccg cgcgccggca caccaacata gggggccacg gaaaccccac
     3961 ggtacctcca gagaaccgcc gaaatcgacc cgcattaccg gtacgaatcc ggatattcac
     4021 gcgatcagta gtgtccggtt catttgaagt cagccggccg caaagccagg tctgacgcga
     4081 gtttcgaggg atttatgggt gtccacgatt tgaatctcgg atcgtcggtt tgcgatgctc
     4141 gcgggtttga acgacccggg gtgacgcatg aacgtgggca agacgctgtt cgcgcaagtg
     4201 atggagttcg tgccgtggaa gaccttcggt cgaatcgtcg agcggcacaa gggggatgcg
     4261 ggtgtacgca caatgggctg cgccgacttg tttcgcgtga tggctttcgc gcaactcacg
     4321 tggcgcgagt cgctgcgcga catcgaggcc tgcctggcag ccaatcaagg caagctgttc
     4381 cacatggggc ggaaggcgcc gccggctctc tcgacgctgt ccgacgcgct gaaccagcgc
     4441 gactggcgca tctctcacga gctggctcag cggctgatcg cgcgggccag gacgctgtac
     4501 gcccaggagc cttcgttgct ggacctcgat gccagcgtct atgcgctgga ctccaccacc
     4561 atcgatttgt gcctgagttt gttcgagtgg gcgccgtttc gctcgggcct tggccgcca
//
LOCUS       DASVHM010000504         2123 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_35574, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000504 DASVHM010000000
VERSION     DASVHM010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35574"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..537)
                     /gene="metW"
                     /locus_tag="VF308_09485"
     CDS             complement(<1..537)
                     /gene="metW"
                     /locus_tag="VF308_09485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis protein MetW"
                     /protein_id="HEX7436929.1"
                     /translation="MSDRKDMELIAELVPPGSRVLDLGCGNGELLAHLRDQRRCSGYG
                     IEIADANVLACEQRGVNVIQLNLEEGLALFEDRSFDVVLQLDTLQHLRNTEKMLRETA
                     RVGRIGIVSFPNFAHWPNRLHVVGGRMPVTRVLPYQWYDTPNIRVGTYADFEVLALKD
                     GLRILDSFGIQNGSVVRRW"
     gene            complement(534..1676)
                     /locus_tag="VF308_09490"
     CDS             complement(534..1676)
                     /locus_tag="VF308_09490"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HEX7436930.1"
                     /translation="MTTLGDVQPQSMHFAEALPLTSGARLRDYTLVYETYGTLASDRR
                     NAVLVCHALNASHHAAGTYAGDPKSEGWWNNLIGPGKPLDTNRFFVISINNPGSCFGS
                     TGPMHVNPDPAAGGRRYGADFPVVTVEDWVDAQARLVDRLGITQLAAVIGGSLGGMQA
                     LAWALRFPARLRHCIAIATAPNLSAQNIAFNEVARRAIVTDPDFHGGHFYEHDVVPRR
                     GLRVARMIGHITYLSDDAMEAKFGRDRHAAALGYTTQEIDFQIEGYLRHQGDKFSEYF
                     DANTYLLITRALDYFDPAIAHGGDLTATFAVARCKFLLVSFTTDWRFAPARSREIVKA
                     LVDNRLDLSYAEIAAPHGHDAFLLDDARYHGVLRARFDAIAREGPR"
     regulatory      complement(1711..1788)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00521"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="SAM riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00521"
     gene            1865..>2123
                     /locus_tag="VF308_09495"
     CDS             1865..>2123
                     /locus_tag="VF308_09495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018058997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEX7436931.1"
                     /translation="MARPSRRIDLALLASGRALFPAAGCAGLSVRAVADHAGANLGMF
                     HYHFKTKDNFLRTLLQQMYEEMYATLAGAVSQHGRAIERLRG"
BASE COUNT          343 a          687 c          755 g          338 t
ORIGIN      
        1 ccaacgccgc accaccgagc cgttctggat gccaaaggaa tcgaggatgc gcagcccgtc
       61 cttgagcgcc agcacctcga agtcggcgta ggtgccgacg cggatgttgg gcgtgtcgta
      121 ccactggtag ggcagcacgc gggtgaccgg catgcgcccg ccgacgacgt gcaggcgatt
      181 cggccaatgc gcgaagttcg ggaagctgac gatgccgatg cggccgacgc gcgccgtctc
      241 gcgcagcatc ttttcggtgt tgcgcaggtg ctggagcgtg tcgagctgca gcaccacgtc
      301 gaagctccgg tcctcgaaca gggcgaggcc ctcctcgagg ttgagctgga tcacgttgac
      361 gccgcgctgc tcgcaggcga gcacgttggc atcggcgatc tcgatgccgt agccgctgca
      421 gcggcgctgg tcgcgcaggt gcgcgagcag ttcgccgttg ccgcagccga ggtcgaggac
      481 gcgcgagccg ggcggcacca gctcggcgat cagctccatg tccttgcggt cgctcatcgc
      541 ggcccctcgc gagcgatggc gtcgaagcgc gccctcagaa cgccgtgata gcgcgcgtcg
      601 tcgaggagga acgcatcgtg cccgtgcggt gcggcgatct cggcatagct caggtcgagc
      661 cggttgtcga cgagcgcctt gacgatctcg cgcgagcgcg ccggcgcgaa gcgccagtcg
      721 gtcgtgaagc tgacgagcag gaacttgcag cgcgccacgg cgaaggtggc ggtcaggtcg
      781 ccgccgtgcg cgatcgcggg gtcgaaatag tcgagcgcgc gggtgatgag cagataggtg
      841 ttggcgtcga aatactcgct gaacttgtcg ccctgatggc gcaggtaacc ctcgatctgg
      901 aagtcgattt cctgcgtcgt gtagccgagc gcggcggcat gcctgtcgcg cccgaacttg
      961 gcctccatcg cgtcgtccga gaggtaggtg atgtggccga tcattcgcgc cacgcgcagg
     1021 ccgcggcgcg gcaccacgtc gtgctcgtag aagtggccgc cgtggaaatc gggatcggtg
     1081 acgatggcgc ggcgcgccac ctcgttgaag gcgatgttct gcgccgagag attgggcgcg
     1141 gtcgcgatcg cgatgcagtg gcgcaggcgc gccgggaaac gcaaggccca ggccagcgcc
     1201 tgcatgcctc ccaggctgcc gccgatcacg gccgcaagct gcgtgatgcc gagccggtcg
     1261 acgaggcggg cctgcgcatc gacccagtcc tcgaccgtca cgaccggaaa gtcggcgccg
     1321 tagcggcggc cgccggccgc gggatcgggg ttcacgtgca tcggcccggt cgagccgaag
     1381 cacgagcccg ggttgttgat gctgatcacg aagaagcggt tcgtgtcgag cggcttgccg
     1441 ggcccgatga ggttgttcca ccagccctcg cttttcgggt cgcccgcgta ggtgcccgcg
     1501 gcgtggtggc tcgcattcag ggcatggcag acgagcaccg cattgcggcg atcggacgcg
     1561 agcgtgccgt aggtttcgta gaccagcgtg tagtcgcgca ggcgcgcccc gctcgtcagc
     1621 ggcagcgcct ctgcgaagtg catcgattgc ggctggacgt caccgagcgt ggtcatgggc
     1681 aaacgaaaaa acccggcgcc gccaaagcgg gacaccgggt gtgcgtcctg tctttagccg
     1741 aatttataga gcgcccgcaa gccggaacaa atcagcgctg atccgcagta tagcgagggc
     1801 ctcgcgcagg ccgccgcgaa cgccgcgctt gccaaatact ggtcgaccga ctaaaaaata
     1861 gcccatggcc cgcccttcgc gccgcatcga cctcgcgctg ctcgccagcg gccgggccct
     1921 ctttccggct gccggttgcg cgggcctctc ggtgcgcgcg gtcgccgacc atgcgggggc
     1981 gaacctcggc atgtttcact atcacttcaa aacgaaggac aacttcctgc gcaccttgct
     2041 gcagcagatg tacgaggaga tgtacgcgac cctcgcgggc gcggtctcgc agcacggccg
     2101 cgcgatcgag cggctgcgcg gcg
//
LOCUS       DASVHM010000505         1975 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_252336, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000505 DASVHM010000000
VERSION     DASVHM010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1975)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1975)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1975
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252336"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1208)
                     /locus_tag="VF308_09500"
     CDS             complement(<1..1208)
                     /locus_tag="VF308_09500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007876918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HEX7436932.1"
                     /translation="MEWNVAGLPARCLGLALASILAACNSLPVIVPDMALPREPVQLE
                     GANGRMLSPSQSKAILDRLKAGSPETSLFDHHLAVEEAISGNPLTAGNSVVLLEDGPA
                     TYEAMFAAIRTARDHINMETYILEDDEIGRKFADVLIDKQKQGVQVNVIHDGVGTFGT
                     PREYFTRLTEAGINVLEFNPVNPLTAKAGWDVNQRDHRKILIVDGGTAFLGGINISSV
                     YSGGSASRPAKRTGNSKDLPWRDTDLQVRGPVVADLQKSFVDTWERQKGEPLAPRNYF
                     PSIDAKGKEVVRAIASAPEDPLSLIYATFISAINSAQSEILLTNAYFVPDPQLVDALI
                     AAVARGVDVKMVLPSATDSWLVFHAGRAHYERLLRGGVKLYERRDVLLHSKTALIDGV
                     WSTVGSTNLD"
     gene            complement(1290..>1975)
                     /gene="pyrD"
                     /locus_tag="VF308_09505"
     CDS             complement(1290..>1975)
                     /gene="pyrD"
                     /locus_tag="VF308_09505"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019653151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase (quinone)"
                     /protein_id="HEX7436933.1"
                     /translation="DGLAAFIANVRRARFRASGGILGLNIGKSASTPIEEAASDYVAC
                     LEGVYPHADYVTVNISSPNTTNLRSLQGAQALDPLLATLQARKAELARQHGRNVPIFV
                     KIAPDLDEAQVASIAATLTANGIDGVIATNTTLDRSTVRHLEHGAEAGGLSGAPVFER
                     SNRVVAQLRAALGSAYPIIGVGGVMSGADACAKVAAGADMVQIYTGFVYRGPELVGEA
                     AQMLSERRS"
BASE COUNT          308 a          637 c          686 g          344 t
ORIGIN      
        1 cagtcgagat tggtcgagcc gacggtcgac cagacgccat cgatcagcgc ggtcttcgaa
       61 tggagcagca cgtcgcgacg ctcgtagagc ttcactcccc cgcgcagcag gcgctcgtag
      121 tgggctcggc cggcgtgaaa gacgagccag gaatcggtcg cgctcggcag caccatcttg
      181 acgtcgacgc cgcgcgcgac cgccgcgatc agtgcgtcca ccagctgggg gtcgggcacg
      241 aagtaggcgt tggtgagcag gatctcggat tgcgcgctgt tgatcgccga gatgaacgtg
      301 gcgtagatga ggctgagcgg atcttcgggc gcgctcgcga tcgcgcgcac cacctccttg
      361 cccttggcgt cgatggacgg gaagtagttg cgcggggcca gcggctcgcc cttctggcgc
      421 tcccaggtgt cgacgaagga cttctgcagg tcggcgacca ccggtccgcg cacctgcaga
      481 tcggtgtcgc gccagggcag gtccttggaa ttcccggtgc gcttggccgg ccggctcgcc
      541 gatccgcccg aatagacgct gctgatgttg atgccgccca gaaacgcggt gcctccgtcg
      601 acgatcagga tcttgcggtg atcgcgctgg ttcacgtccc agccggcctt cgcggtcaac
      661 gggttgaccg gattgaactc gagcacgttg atgccggcct ccgtcaggcg cgtgaagtac
      721 tcgcgcggcg tgccgaaggt gccaacgccg tcgtggatca cattgacctg cacgccctgt
      781 ttctgcttgt cgatcagcac gtcggcgaac ttgcgcccga tctcgtcgtc ctcgaggatg
      841 taggtctcca tgttgatgtg gtcgcgcgcc gtgcgaatcg ccgcgaacat cgcttcgtac
      901 gtcgccggcc cgtcttcgag cagcacgacg gagttgcccg cggtcagcgg gttgccggag
      961 atggcttcct cgaccgcgag gtggtgatcg aagaggctgg tctcggggct accggccttg
     1021 agtcggtcga ggatcgcctt gctctggctc ggcgacagca tgcgcccgtt ggcgccttcg
     1081 agctggaccg gctcgcgcgg caacgccatg tcgggcacga tgaccggcag cgaattgcac
     1141 gcggccagga tcgaggcaag cgccaacccg aggcatcggg ccggaagccc ggcgacgttc
     1201 cattccattc ggactcctgt gcagcgaata ctgcgcgatt cgacggaagg gtatctgtta
     1261 acgcccatgt cacgggcgcc gcaagtgcat caggagcgcc gctccgacaa catctgagcc
     1321 gcttctccga caagctcggg gccccggtag acgaacccgg tgtagatctg caccatgtcg
     1381 gctcccgccg cgaccttcgc gcacgcatcg gccccgctca tcacaccgcc gacgccgatg
     1441 atcggatagg cactgccgag ggcggcgcgc agttgcgcga cgacccggtt cgagcgctcg
     1501 aagaccggcg caccggaaag gccgcctgcc tcggcgccat gctccagatg ccggaccgtg
     1561 ctgcggtcga gcgtggtgtt ggtcgcgatc acgccatcga tgccgttcgc ggtcagggtc
     1621 gcggcgatcg atgcgacctg tgcctcgtcg aggtcggggg cgatcttgac gaagatcgga
     1681 acgttgcggc cgtgctggcg tgcgagctcg gccttgcgcg cctgaagcgt ggcgagcagc
     1741 ggatcgagcg cctgggcgcc ctgcagcgag cgcaggttcg tcgtgttggg gctcgagatg
     1801 ttgaccgtca cgtagtcggc atgcgggtag acgccttcga ggcaggcgac atagtcggaa
     1861 gccgcctcct cgatcggcgt cgacgcgctc ttgccgatgt tgaggccgag aatgccgccg
     1921 ctcgcacgaa agcgcgcgcg ccggacgttc gcgatgaacg cggcgaggcc gtcgt
//
LOCUS       DASVHM010000506         4496 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_758988, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000506 DASVHM010000000
VERSION     DASVHM010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4496
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_758988"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..213)
                     /locus_tag="VF308_09510"
     CDS             complement(<1..213)
                     /locus_tag="VF308_09510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019572342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436934.1"
                     /translation="METILHSTRSGAALAAVTLLAGLTVGQVAFAQGKGIDEPFRDSY
                     RKTLAGKTVAYVPVALGFDLAQGWLEG"
     gene            complement(284..1255)
                     /locus_tag="VF308_09515"
     CDS             complement(284..1255)
                     /locus_tag="VF308_09515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011811248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7436935.1"
                     /translation="MKLPQISQQTIVFTIFVLMFAGFSLFLTGFLTAGNLLGLLQNVA
                     ILGILGLGMAIVVIGRGIDISMVAVLAVPAGLVLQLVQDGHSAPMAFLAALALALAFG
                     LVNGWLVAYAEVPSLFTTLASGLFLAGLGQVAFFRLDIVQWSPQLDRFAWVGRGTLLG
                     VPMPVIMFGVVAAAVSFFLRRTRLGTYVYAIGDNPFGARVTGIPTRPVIVLQYVLAAL
                     IGAFAGMVMAASVNSMPTRIYNSTLIYDVILVVVLGGIGLSGGRGGVVNVVIGTLLIG
                     TLLNGMTILDVSYSAQNLVKGVILLIAILIDSFLNPRNEETAQQGDI"
     gene            complement(1252..1905)
                     /locus_tag="VF308_09520"
     CDS             complement(1252..1905)
                     /locus_tag="VF308_09520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX7436936.1"
                     /translation="MPAAAVLASPWAHPLDRGQERAVKRDAVLRAAAQLFNEHGYHAT
                     SLAMVAERLQVTKPTLYYYIHNKEEILFECVRLGLELLRSAIAGAAASGGTAVDKLEA
                     AMHEYALIVTCDFGMCLIRVGEDPLAPAARKQLRRLKAELDHEFRALIEQGFAEGSIA
                     RCDPKLAAFTLAGALSWIGRWYDPEGELGAADVAQQSIAILMNGLAPRGRRAAATPR"
     gene            complement(2049..3671)
                     /locus_tag="VF308_09525"
     CDS             complement(2049..3671)
                     /locus_tag="VF308_09525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008116446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7436937.1"
                     /translation="MLITRAATFDEIHRAFRWNLPERYNIARDVCDRHAADPARTALI
                     HERGDGSVAHYSFRQIRCLANQCANTLRHLGLVQGDRVLIYLGQDPATAVAHVACWKA
                     GLISVPTSLLFGTDALAYRLRDSGAKLLITDAAHWPNVAAVREQAPHLAHVMLVDGKG
                     AGTLDFWAELARATDEFETLALTPDTPAFINYTSGTTGQPKGTLQGHRSMLGHMPGLE
                     LVYDFLPQPGDVMWSPADWSWLAGLMDVLMPAWFCGLPVLTYRNTSFDPEEAFHLMGK
                     HRVRISLLTPTMLRRLSVVPDPLRRHGVALRSVISGGESVGRETLEWARGALGIEINE
                     VFGQTECNIVLGNCTQVLAPKPGSLGKALPGHVAAIVDDQGHPLSADTVGNIAFRRPD
                     PVMLLEYWNKPEATRDKFAGDWLLTGDLGRCDEDGYYWYMSRADDVITSAGYRIGPGE
                     IEDALNGHPAVAMSAVIGVPDPVKTEAIRAFVLLRPGNTASAELAEAIRDSVRTRLAR
                     HECPRDVVFVESLPLTATGKIMRRELRRLPVT"
     gene            complement(3678..>4496)
                     /locus_tag="VF308_09530"
     CDS             complement(3678..>4496)
                     /locus_tag="VF308_09530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEX7436938.1"
                     /translation="PLVAGTIRTVFSMTEPDDGAGADPSLLKTEARADGDDFVIDGRK
                     WLITGVPGAALNIVMARTFDASGKDIGASMFLVDIDAPGFRIVRQLDTIDAVSPGGHA
                     VVEFEGVRVPRSAVLGELGQGLRNAQVRLGPARLTHCMRWLGAARRAHDVAVEYARRR
                     HAFGKLIGEHQGVGFQLADNEIELHCARLAVWHAAWLLDQGKHARTETSQCKVFCSEA
                     LSRVVDRSLQILGGLGITTDTVVQRIYREIRPFRIYDGPSEVHRHALARRIVGA"
BASE COUNT          718 a         1512 c         1605 g          661 t
ORIGIN      
        1 accctcgagc cagccttgcg cgaggtcgaa gccgagcgcc accggcacat aggcgacggt
       61 cttgccggcg agcgtcttgc gatagctgtc gcggaacggc tcgtcgatgc ccttgccctg
      121 ggcgaacgcg acctggccga cggtcaggcc ggcgagcagg gtcacggctg ccagtgcggc
      181 gccggatcgt gtggagtgga ggatcgtttc catgaatgtc tcctgcggtt tgtcgtgaaa
      241 agggagcggc cgttgccgcc gtcgggttgc ggtttcgtcg tcgtcagatg tcaccctgct
      301 gcgctgtttc ctcgttgcgc ggattgagga acgagtcgat caggatcgcg atcagcagga
      361 tcacgccctt gaccaggttc tgcgccgagt acgagacgtc gaggatcgtc atgccgttga
      421 gcagcgtgcc gatcagcagc gtgccgatca cgacgttgac gacgccgccg cgcccgcccg
      481 acaggccgat gccgccgagc acgacgacga ggatcacgtc gtagatcagg gtcgagttgt
      541 agatccgcgt cggcatgctg ttgaccgacg ccgccatcac catgccggcg aacgcgccga
      601 tcagcgccgc gagcacgtac tgcagcacga tcacgggccg cgtcgggatg ccggtgacgc
      661 gcgcaccgaa cgggttgtcg ccgatcgcgt agacgtaggt gccgaggcgc gtccgacgca
      721 ggaagaacga caccgccgcg gcgacgacgc cgaacatgat caccggcatc ggcacgccga
      781 gcagcgtgcc gcggccgacc cacgcgaagc ggtcgagctg cgggctccac tggacgatgt
      841 cgaggcggaa gaacgcgacc tggccgaggc cggcgaggaa gagccccgag gcgagcgtcg
      901 tgaagagcga gggcacctcg gcgtaggcga ccagccagcc gttgaccagg ccgaacgcga
      961 gcgcgagcgc gagcgcggcg agaaacgcca tcggcgccga atggccgtcc tggaccagct
     1021 gcagcaccag gccggccggc accgcgagca ccgcgaccat cgagatgtcg atgccgcggc
     1081 cgatcacgac gatcgccatg ccgaggccga ggatgccgag gatggccacg ttctgcagca
     1141 gcccgagcag gttcccggcg gtgaggaagc ccgtcaggaa caggctgaag ccggcgaaca
     1201 tcagcacgaa gatcgtgaag acgatcgtct gctgcgagat ctgcggcagc ttcatcgcgg
     1261 ggtcgcggcg gcgcggcgcc cgcgcggcgc caggccgttc atcaggatcg cgatgctttg
     1321 ctgcgcgacg tccgccgcgc cgagctcccc ctcggggtca taccatcggc cgatccagct
     1381 cagcgcaccg gccagcgtga acgcggcgag cttcggatcg cagcgggcga tcgagccttc
     1441 ggcgaagccc tgctcgatga gcgcgcggaa ctcatggtcg agctcggcct tcagccggcg
     1501 cagctgcttg cgcgccgccg gcgcgagcgg gtcttcgccg acgcggatca ggcacatgcc
     1561 gaaatcgcag gtgacgatca gcgcgtattc gtgcatcgcc gcctccagct tgtcgacggc
     1621 ggtgccgccc gacgcagcgg cgccggcgat cgccgagcgc agcagctcga ggccgagccg
     1681 gacgcactcg aacaggatct cttccttgtt gtggatgtag tagtagagcg tcggcttggt
     1741 gacctgcagc cgctcggcga ccatggcgag cgaggtcgcg tgatagccat gctcgttgaa
     1801 cagctgcgcc gccgcgcgca gcaccgcatc gcgcttgacc gcgcgctcct gcccgcggtc
     1861 gagcggatgg gcccacggcg aagcgaggac agcggcagcg ggcatcaggt ctcctggcga
     1921 gccgggtccg cacgagggcg cggcgaggct tcttgctgtt cgagaagcgc ggttactcgt
     1981 cggtaacgcg aagtgggata gtggtcgccg ggctggcctc gcgcaagccc ggagcgccaa
     2041 ggatttccct aggtcaccgg gagccggcgc agctcgcggc gcatgatctt gccggtagcc
     2101 gtgagcggca gcgactcgac gaacacgacg tcgcgcgggc actcatggcg cgccaggcgc
     2161 gttcgcaccg agtctcggat cgcctcggcg agctcggcgc tcgccgtgtt gccggggcgc
     2221 agcagcacga aggcgcggat cgcctcggtc ttcaccggat cgggaacgcc gatcaccgcc
     2281 gacatcgcca ccgcggggtg accgttcagc gcatcctcga tctcgcccgg gccgatccgg
     2341 tagccggcgc tcgtgatgac gtcgtcggcg cggctcatgt accagtagta gccatcctcg
     2401 tcgcagcggc cgaggtcgcc ggtgagcaac cagtcgccgg cgaacttgtc gcgcgtcgcc
     2461 tcgggcttgt tccagtactc gagcagcatc accgggtcgg ggcggcggaa cgcgatgttg
     2521 ccgaccgtgt ccgccgacag cggatgccct tggtcgtcga cgatcgcggc gacgtggccg
     2581 ggcagcgcct tgccgagcga gccgggcttg ggcgccagca cctgcgtgca gttgccgagg
     2641 acgatgttgc actcggtctg gccgaacact tcgttgatct cgatgccgag cgcgccgcgc
     2701 gcccattcga gcgtctcgcg tccgaccgat tcgccgccgc tgatgaccga acgcagcgcg
     2761 acgccgtggc gacgcagtgg atcggggacg acgctgagcc ggcgcagcat cgtcggcgtc
     2821 agcaggctga tgcgcacgcg gtgcttgccc atcagatgga acgcctcttc cgggtcgaag
     2881 ctcgtgttgc gataggtcag caccggcagg ccgcagaacc acgccggcat cagcacgtcc
     2941 atcagccccg caagccaaga ccagtcggcc ggcgaccaca tcacgtcccc cggttgcggc
     3001 agaaagtcgt agacgagctc gaggcccggc atgtggccga gcatcgagcg atggccttgc
     3061 aaggttcctt tcggctggcc ggtggtgccc gacgtgtagt tgatgaaggc gggcgtgtcg
     3121 ggtgtcagcg cgagcgtttc gaactcgtcc gtggcacgcg cgagctcggc ccagaagtcg
     3181 agcgtgccgg cgcccttgcc gtcgaccagc atcacgtgcg cgaggtgggg cgcctgctcg
     3241 cgcacggcgg cgacgttcgg ccaatgcgcg gcatcggtga tcagcagctt cgcgccgctg
     3301 tcgcgcagcc ggtaggcgag cgcgtcggtg ccgaacagga gcgaggtcgg caccgagatc
     3361 agccccgcct tccagcaggc gacgtgcgcg accgccgtcg ccgggtcctg gccgagatag
     3421 atcagcacgc gatcgccctg gacgagaccg agatggcgca gcgtgttcgc gcactggttg
     3481 gcgaggcacc ggatctggcg gaagctgtag tgtgcgacgc tgccgtcgcc gcgctcgtgg
     3541 atcaacgcgg tgcgagccgg gtcggcggca tgacgatcgc agacatcgcg cgcgatgttg
     3601 tagcgctcgg gcagattcca gcggaacgcg cggtggatct cgtcgaaggt ggcggcgcgg
     3661 gtgatcagca tgcagcctca cgcgccgacg atgcgccttg ccagcgcgtg gcgatgcacc
     3721 tccgacggtc cgtcgtagat gcgaaacggc cggatctcgc ggtagatgcg ctgcacgacc
     3781 gtgtcggtcg tgatgcccag gccaccgagg atctgcagcg agcggtcgac gacgcggctc
     3841 agcgcctccg agcagaacac cttgcactgg ctcgtctcgg tgcgcgcgtg cttgccctgg
     3901 tcgaggagcc atgcggcatg ccacaccgcg agccgtgcgc aatgcagctc gatctcgttg
     3961 tcggcgagct ggaagccgac gccctggtgc tcgccgatca gcttgccgaa cgcatgccgg
     4021 cgccgcgcgt actcgaccgc gacgtcgtgc gcgcgccgcg ccgcgccgag ccagcgcatg
     4081 cagtgggtga gccgcgccgg accgagccgg acctgcgcgt tgcgcaaccc ctggccgagc
     4141 tcgccgagca cggcgctgcg cggcacgcgc acgccctcga actcgaccac cgcgtggccg
     4201 ccgggcgaga cggcgtcgat cgtgtcgagc tggcgcacga tgcgaaatcc gggcgcgtcg
     4261 atgtcgacca ggaacatgct cgcgccgatg tctttcccgc tcgcatcgaa ggtccgcgcc
     4321 atcacgatgt tcagcgcggc cccgggcacc ccggtgatca gccatttgcg gccgtcgatc
     4381 acgaaatcat cgccgtcggc gcgcgcctcg gtcttcagca gcgacgggtc ggcgccggcg
     4441 ccgtcgtccg gctcggtcat cgagaacacg gtgcgaatcg tgccggcaac caaggg
//
LOCUS       DASVHM010000507         3433 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_759250, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000507 DASVHM010000000
VERSION     DASVHM010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3433
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_759250"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1130
                     /gene="rodA"
                     /locus_tag="VF308_09535"
     CDS             <1..1130
                     /gene="rodA"
                     /locus_tag="VF308_09535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013539461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEX7436939.1"
                     /translation="QRARPLWTGFDAALLLAVVLLAATGLFTMYSAGFDHGTRFTDHA
                     RNMLLALLVLFVAAQISPQTLVKFAIPLYVAGVVLLVMTALPGLGVTKKGATRWLNVG
                     VVIQPSEILKIAMPLMLAWWFQRREGQLRALDFAIALLLLIVPVALIVKQPDLGTAIL
                     VLSAGLYVIFFAGLSWRLIIPVLVVGALAITAVVVSEDRICQPEVKWPMLRDYQKNRV
                     CTLLDPTTDPLGKGFHIIQGMIAIGSGGVDGKGFMKGTQTHLEFIPERTTDFIFAAFS
                     EEFGLAGGVALMLGFIFLIFRGLMIAADAPTVFTRLLAGAITLSFFTYAFVNMGMVSG
                     ILPVVGVPLPFISYGGTAMVTLGLGLGILMSISKSRRLVQS"
     gene            complement(1153..2667)
                     /locus_tag="VF308_09540"
     CDS             complement(1153..2667)
                     /locus_tag="VF308_09540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase N-terminal
                     domain-containing protein"
                     /protein_id="HEX7436940.1"
                     /translation="MLAPLLLLWPMSVALTWLVAQGLANPPFDRELGAKVRQIAREVA
                     FRPTAGGKSEALFSLSQGASDILRPDDTDVIYFQVLGSRGEQLAGDAAISLPADEDHS
                     PPGEVRFRDETIHQADVRVAYMWVPGAERNAGQTPLVQVAETVGKRSRLATEIIKGVI
                     LPQFVILPVAVLLVWLALARGIAPLNELQQRIRRRDSSDLSPIDEHAAPEEVSPLVRA
                     INDLLGRLDQSIKAQKHFLADAAHQLKTPLAGLRTQAELAQREIDAGQHDPKALKESL
                     QQIARSSQNAAHMVNQLLAMARAEDEEQGSQREAVSLTALATETVRDFVPRALDKRID
                     LGFESGHGVEALARSKPLWVRGNSVLLRELIRNLVDNALQYTPAGGTVTVRVMHDPFG
                     QVVVLQVEDSGPGIAPAEREQVFHPFYRSLGTNVDGSGLGLAIVREIAARHAVEVTLE
                     DAQPRLRPGGPGALFTLRFPAVSLPAAGVGASAGVADTGAAAALPPGHPARSPA"
     gene            complement(2748..3419)
                     /locus_tag="VF308_09545"
     CDS             complement(2748..3419)
                     /locus_tag="VF308_09545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX7436941.1"
                     /translation="MRILIAEDDQVLADGLLRSLRNAGYAVDQVGSGTEADAALASHE
                     FDLLILDLGLPKMHGLEVLRKLRARGSAVPVLILTAADSVEQRVRGLDFGADDYMAKP
                     FSLQELEARVRALTRRGLGTASSVIRHGPLTFDATGRVAYINDQMVDLSARELSLLEV
                     LLQRAGRLVSKDQLVERLCEWGEEVSNNAIEVYIHRLRKKIEQGTVRIATVRGLGYCL
                     EKIPA"
BASE COUNT          480 a         1191 c         1177 g          585 t
ORIGIN      
        1 ggcaacgcgc ccggcccctg tggaccgggt tcgacgccgc gcttctgctg gccgtcgtgc
       61 tgctcgcggc aaccgggctg ttcacgatgt actcggccgg gttcgaccac ggcacccgct
      121 tcaccgacca tgcgcgcaac atgctgctcg ccctgctcgt gctcttcgtc gccgcgcaga
      181 tctcgccgca gaccctggtg aagtttgcga tcccgctcta cgtcgccggc gtcgtgctgc
      241 tggtcatgac cgcgctgccc gggttgggcg ttacgaagaa gggcgccacg cgctggctca
      301 atgttggcgt cgtgatccag ccgagcgaga tcctgaagat cgcgatgccg ctgatgctcg
      361 cctggtggtt ccagcgccgc gaaggccagc tgcgcgcgct cgatttcgcg atcgcgctgc
      421 tgcttctcat cgtgccggtc gcgctgatcg tcaagcagcc cgatctcggg accgcgatcc
      481 tggtgctctc cgccgggctc tacgtgatct tcttcgccgg cctgtcctgg cgcctgatca
      541 ttccggtgct ggttgtgggc gcgctcgcca tcaccgcggt cgtcgtgtcg gaagatcgca
      601 tctgccagcc cgaggtgaag tggccgatgc tgcgcgacta ccagaagaac cgcgtctgca
      661 ccctgctcga cccgacgacc gatccgctcg gcaagggctt tcacatcatc cagggaatga
      721 ttgcgatcgg ctcgggcggc gtcgacggca agggcttcat gaagggcacg cagacgcacc
      781 tcgagttcat tcccgagcgc acgaccgatt tcatcttcgc cgccttttcc gaagagttcg
      841 gcctggccgg cggcgtcgcc ctgatgctcg gcttcatctt cctgatcttt cgcgggctga
      901 tgatcgccgc ggatgcgccg acggtcttca cgcgtctcct cgccggggcg atcacgctca
      961 gcttcttcac ctatgccttc gtcaacatgg gcatggtaag cggcatcctg cccgtcgtcg
     1021 gcgtgccgct gccgttcatc agctatggcg ggacggcgat ggtcacgctc ggcctcggcc
     1081 tcggcatcct gatgtcgatc tcgaaaagcc ggcgcctcgt gcagagctga gcccggtcac
     1141 gagccggccc ctttatgccg ggcttcgggc cggatgcccg ggcggcaagg ccgcggctgc
     1201 tccagtgtcg gcgacgcccg cgctcgcgcc gacacccgcg gcgggcagcg acaccgccgg
     1261 aaaacgaagg gtgaagagcg cgccagggcc gcccgggcgc aggcgcggtt gggcatcctc
     1321 gagcgtgacc tcgaccgcgt ggcgcgcggc gatctcgcgc acgatcgcca agcccaggcc
     1381 ggaaccgtcg acgttggtgc ccagcgaccg atagaacgga tggaacacct gctcgcgctc
     1441 ggccggcgcg atgccggggc cggaatcctc gacctgcagc accacgacct ggccgaacgg
     1501 gtcgtgcatc acgcgcaccg tcaccgtacc gccggcgggc gtgtattgga gcgcgttgtc
     1561 gaccaggttg cggattagct cgcgcagcag caccgagttg ccgcggaccc agagcggctt
     1621 cgagcgggcg agcgcctcca ccccatgtcc gctttcgaag ccaaggtcga tgcgcttgtc
     1681 gagggcgcgc gggacgaagt cgcgcaccgt ctcggtggcc agcgcggtca ggctcaccgc
     1741 ttcgcgctgc gaaccctgtt cctcgtcttc ggcgcgtgcc atggcgagca gctggttgac
     1801 catgtgcgcc gcgttctggc tcgagcgcgc gatctgctgc agcgattcct tcagcgcctt
     1861 cgggtcgtgc tggccggcgt cgatctcgcg ctgcgccagt tcggcctggg tgcgcaggcc
     1921 ggcgagcggt gtcttcagct ggtgtgccgc gtcggcgagg aaatgcttct gcgccttgat
     1981 cgactggtcg agccggccga gcaggtcgtt gatcgcgcgc accagcggcg agacttcctc
     2041 gggcgcggcg tgctcgtcga tcgggctcag gtcgctgctg tcgcggcgcc ggatgcgctg
     2101 ctgcagttca ttgagcgggg cgatgccgcg cgccaacgcg agccacacca gcagcaccgc
     2161 caccggcagg atcacgaatt gcggcaggat cacgcccttg atgatttcgg tcgcgaggcg
     2221 cgagcgcttg ccgacggttt cggccacctg cacgagcggt gtctgcccgg cgttgcgttc
     2281 cgcgccgggc acccacatgt aggcgacgcg cacgtcggcc tggtggatcg tttcatcgcg
     2341 aaagcgcact tcgccgggcg ggctgtggtc ttcgtccgcg ggcagcgaaa tcgccgcatc
     2401 gccggccagc tgttcaccgc gcgagccgag cacctggaag tagatgacgt cggtgtcgtc
     2461 ggggcgaagg atgtccgagg cgccttgcga caggctgaag agcgcctccg acttcccgcc
     2521 ggccgtcggc cggaacgcca cctcccgggc gatctgccgc accttggcgc cgagctcgcg
     2581 atcgaagggc gggttcgcga ggccctgggc gaccagccac gtcagcgcca cgctcatcgg
     2641 ccacagcagc agcaacgggg cgagcatcca gtcgaggatc tcgccgaaga gcgatcggtg
     2701 cctgcgcggc gagggcgcga cgggaggaga cggcacgccc tggggcccta ggccggaatc
     2761 ttctcgaggc agtagccgag gccgcgcacc gtggcgatgc gcaccgtgcc ctgctcgatc
     2821 ttcttgcgca ggcggtggat gtagacctcg atcgcgttgt tgctgacctc ctcgccccac
     2881 tcgcacagcc gctcgaccag ctggtccttg ctgacgaggc gcccggcgcg ctgcagcagc
     2941 acttcgagca ggctcagctc gcgcgccgag aggtccacca tctggtcgtt gatgtaggcg
     3001 acgcgtccgg tcgcgtcgaa ggtcagcggg ccgtggcgga tcacgctcga cgcggtgccc
     3061 aggccgcgcc gcgtcaacgc acgcacgcgg gcttcgagct cctgcagcga gaacggcttg
     3121 gccatgtagt cgtcggcgcc gaagtcgagc ccgcgcacgc gctgctcgac gctgtcggcc
     3181 gcggtcagga tcagcaccgg cacggccgag ccgcgcgcgc gcagcttcct cagcacttcg
     3241 aggccgtgca tcttcggcag gccgaggtcg aggatcagga ggtcgaactc gtgcgaggcg
     3301 agcgcggcgt cggcctcggt gccgctgccg acctggtcca cggcatagcc ggcattgcgc
     3361 agcgagcgca gcagcccgtc ggccagcacc tggtcgtctt cggcgatcag aatccgcatg
     3421 cgatgtctcc tgc
//
LOCUS       DASVHM010000508         4732 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_179974, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000508 DASVHM010000000
VERSION     DASVHM010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4732
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179974"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..490
                     /locus_tag="VF308_09550"
     CDS             <1..490
                     /locus_tag="VF308_09550"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX7436942.1"
                     /translation="LGFAPGTTIERHVQAEAFVATLGERLTRGAAFFIDYGFPEAEYY
                     HPQRIGGTLMCHRAHRADTDPLADVGLKDITAHVDFTGIALAAQKAGFEVIGYTSQAR
                     FLMNCGLLEMLQGADLRTIADAQKLLTEHEMGELFKVLALARGCAFEPLGFTRGDRRH
                     TL"
     gene            526..720
                     /locus_tag="VF308_09555"
     CDS             526..720
                     /locus_tag="VF308_09555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012203183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2905 domain-containing protein"
                     /protein_id="HEX7436943.1"
                     /translation="MIRWLIVVFLALVIFSALRPWLEKMGLGKLPGDFRFRLAGREWF
                     IPLTSSVLLSFVAMLVAKLF"
     gene            complement(751..1983)
                     /locus_tag="VF308_09560"
     CDS             complement(751..1983)
                     /locus_tag="VF308_09560"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004810 - CCA tRNA nucleotidyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0001680 - tRNA 3'-terminal CCA addition
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HEX7436944.1"
                     /translation="MEFYSVGGAVRDELLRLPVTDRDWVVVGANAEELLHLGFTPVGA
                     DFPVFLHPETREEYALARTERKTAAGYHGFVFHAAPDVTLEEDLQRRDLTINAMARAQ
                     DGTLIDPWGGQRDLAARVLRHVSSAFVEDPVRILRLARLAARFSDFSVAPETQALLVE
                     MVARGEVDALVPERVWQELSRGLMEARPSRMFEVLRGCGALERVLPEVDRLWGVPQRA
                     DHHPEIDTGVHLMMVLDMAARLGAPLAVRYACLCHDLGKGTTPAEALPRHLGHEQRSV
                     ELARAVGARLKVGTACRDLAEIVAREHGNVNRSAEFGAAALLRLFEHCDALRRPERFA
                     DLLLACECDARGRLGLSDAAYPQRERLQAALDTALAVDATSIAADLMARSVSGPAIGA
                     AIRAARLSALEAIPTDTA"
     gene            complement(1990..2679)
                     /locus_tag="VF308_09565"
     CDS             complement(1990..2679)
                     /locus_tag="VF308_09565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009516723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX7436945.1"
                     /translation="MDDMPMQLYIGNKNYSSWSLRAWLLMTQAGIEFEEIKLRLDWNA
                     ASDFKKTLRGLAPTGRVPLLVDAGFAVWDTLAIVEYLAERFPDRKIWPAPSRARARAR
                     SLCAEMHSGFGALRERFPMNIEASLPEVGARWMRESPEVATDLHRIEDMWSGQLAESG
                     GPFLFGEFGAADAFFAPVCARLKTYAPAVSAQTTAYVERVFLLSAMQAWCEAARAEHD
                     FVAEDEPYRSR"
     gene            complement(2707..3663)
                     /locus_tag="VF308_09570"
     CDS             complement(2707..3663)
                     /locus_tag="VF308_09570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I NDUFA9 subunit family protein"
                     /protein_id="HEX7436946.1"
                     /translation="MTNVLVLGGTGFVGRVLCEKLVERFGAANARILVPSRRPARAKH
                     IQMLPTVELVEADIHDDAQLARLVRGCDSVVNLVAILHGSEAAFERVHVQLPRRLAQA
                     CAAANVNRVVHVSALGAGAQAPSRYLRSKAAGEAALASKALDLTVLRPSVVFGEGDRF
                     LNLFARLQSVFPVLPLAGAGTRFQSVWVDDVGSAIVRCLDDRTTIGETIECCGPEVYT
                     LKQLAQIAGRCSGHPRPVLELGAALGRLQATLLEWLPGEPLMSRDNLDSMRVANVASG
                     ERPGLARLGIRPTSVEAIAPLFLGHEHGPARLDEWRAAVPRH"
     gene            complement(3696..>4732)
                     /locus_tag="VF308_09575"
     CDS             complement(3696..>4732)
                     /locus_tag="VF308_09575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEX7436947.1"
                     /translation="ADNGRARGQQGVQASDAMSASEQHEPAWVYWKARALQALAKDSQ
                     DGESLRGLSRELLASLVGQLNFYGTLAAEDAAQALALPLRPAPLTPAEVEAAGANPGL
                     ARALQLIAIGLRNEGVREWNFTLRGMSDRELLAAAQMACDREVWDRCINTSERTRAEV
                     DMEQRFPTPFRKEVSARAREIGLDAAYVYGLIRQESRFIMDARSGVGASGLMQIMPAT
                     ARWTAKKIGLAYTPGLIADRDTNLRLGTAYLKLILDDFGGSQALAAAAYNAGPGRPRK
                     WREGPWLEPAAWAENIPFAETRDYVKKVLSNATWYAALMGSPGTALKLRLGRAIGPAG
                     AGTVPDKDLP"
BASE COUNT          687 a         1658 c         1678 g          709 t
ORIGIN      
        1 gcttgggttc gcgcccggca cgacgatcga acgccacgtc caggccgagg ctttcgtcgc
       61 gacgctcggc gaacggctca cccgtggtgc cgccttcttc atcgactacg gctttcccga
      121 ggccgagtac taccacccgc aacgcatcgg cggcacgctg atgtgccacc gcgcgcatcg
      181 cgccgacacc gatccgctcg ccgacgtcgg cctgaaggac atcaccgccc acgtcgattt
      241 caccggcatc gcgctcgccg cccagaaggc cggcttcgag gtgatcggct acacctcgca
      301 ggcgaggttc ctgatgaact gcggccttct cgagatgctc caaggggccg acctgcggac
      361 catcgccgac gcgcagaagc tcctgaccga gcacgagatg ggcgagcttt tcaaggtgct
      421 cgcgctcgcc cggggctgcg ccttcgagcc gctcggtttc acgcgcggcg accgccggca
      481 cacgctgtga ccgcggctgc ggccgttgcc gcgtaaggtg ccgcgatgat ccgctggctg
      541 atcgtcgtct tcctcgcgct cgtgatcttc agcgctctca ggccgtggct agagaagatg
      601 ggtctcggca agttgccggg cgacttccgc tttcgcctgg ccggccgtga atggttcatc
      661 ccgctgacga gcagcgtgtt gctcagcttc gtcgcgatgc tggtcgcgaa gctcttctga
      721 gggcacgcag tctttcgggg cgccggcggc tcaggccgtg tcggtcggga tggcctcgag
      781 cgcgctgagg cgagccgcac ggatcgccgc gccgatcgcc gggccgctga cactgcgcgc
      841 catgaggtcg gccgcgatgg acgtggcatc gaccgcgagc gccgtgtcga gcgcggcctg
      901 caggcgctcg cgttgcgggt aggcggcgtc acttaggccg agccgcccgc gcgcatcgca
      961 ttcgcaagcc agcagcaggt cggcgaagcg ctccggccgg cgcaacgcgt cgcagtgctc
     1021 gaagagacgg agcagtgcgg cggcgccgaa ctcggcgctg cggttcacgt tgccatgctc
     1081 gcgggcgacg atctcggcca gatcccggca ggcggtgccg accttcagcc gggcgccgac
     1141 ggcgcgcgcc agttcgacgc tgcgctgctc gtggccgagg tggcgcggca gcgcctcggc
     1201 cggcgtggtg cctttgccca gatcgtggca gaggcaggcg tagcgcaccg cgagcggagc
     1261 gcccaatcgc gccgccatgt ccagcaccat catcaggtgg acgccggtat cgatctccgg
     1321 gtgatggtcg gcgcgctgcg gcacgcccca gagccggtcg acctcgggca ggacgcgctc
     1381 gagcgcgccg cagccgcgca gcacctcgaa catgcgcgac gggcgcgcct ccatcagacc
     1441 gcgcgaaagc tcctgccaga cgcgttcggg cacgagggcg tcgacctcgc cgcgcgcgac
     1501 catctcgacc agcagcgcct gcgtctcggg ggcgacgctg aagtcgctga agcgtgcggc
     1561 caggcgtgcc aggcgcagga tgcgcaccgg atcctcgacg aaggcggacg agacgtggcg
     1621 cagcacccgg gccgcgagat cgcgctgccc gccccaggga tcgatgaggg tgccgtcctg
     1681 cgcccgcgcc atcgcgttga tcgtcaggtc gcggcgctgc aggtcttcct cgagcgtcac
     1741 gtccggcgcc gcatggaaca cgaacccgtg gtagccggcg gcggtcttgc gctcggtccg
     1801 ggcgagcgca tattcctcgc gcgtttcggg gtgcaggaag accggaaaat cggcgcccac
     1861 gggtgtgaag ccgaggtgca gcaattcctc cgcgttcgcg ccgacgacga cccagtcgcg
     1921 atcggtgacg ggcagccgca gcagctcgtc gcggaccgca ccgccgacgc tgtagaactc
     1981 catcgcgggc tagcggctgc ggtacggctc gtcttcggcg acgaaatcgt gttccgcgcg
     2041 tgccgcttcg caccaggcct gcatcgcgct cagcaggaag acgcgctcga cgtaggccgt
     2101 ggtctgggcg ctgaccgccg gcgcgtaggt cttgaggcgg gcgcagaccg gcgcgaaaaa
     2161 ggcgtcggcg gcgccgaatt cgccgaacag gaacggaccg ccgctttcgg cgagctgccc
     2221 gctccacatg tcctcgatgc ggtgcaggtc cgtcgcgacc tccggcgact cgcgcatcca
     2281 gcgcgcgccc acttcgggca acgacgcctc gatgttcatc ggaaagcgtt cgcgcagcgc
     2341 gccgaagccg gagtgcattt cggcgcagag gctgcgggcg cgtgcccggg cccggctcgg
     2401 agccggccag atcttccggt cgggaaacct ttcggcgagg tactcgacga tcgcgagcgt
     2461 gtcccagacc gcgaagccgg cgtcgacgag cagcggcacg cgccctgtcg gtgccaggcc
     2521 ccgcagcgtc ttcttgaagt cggaagcggc gttccagtcg agccgaagct tgatctcctc
     2581 gaattcgatg ccagcctggg tcatcaacaa ccaggcgcgc aaagaccacg acgagtagtt
     2641 cttgttgccg atgtagagct gcatgggcat gtcatccatg aagagacggc cttgcggcgc
     2701 cgtcgatcaa tggcgcggca ccgcggcgcg ccactcgtcg aggcgcgccg gtccgtgctc
     2761 gtggccgagg aagagcgggg cgatcgcctc gaccgaagtc ggccggatcc cgagccgggc
     2821 cagcccgggg cgctcgccgc tcgccacgtt cgcgacgcgc atcgagtcga ggttgtcgcg
     2881 cgacatcagc ggttcgccgg gaagccattc cagcagcgtc gcctgcaggc gaccgagcgc
     2941 cgcgccaagc tctaacaccg gtcgcggatg gcccgagcag cggccggcga tctgcgccag
     3001 ttgcttgagc gtgtagacct cggggccgca gcattcgatc gtttcgccga tggtcgtccg
     3061 gtcgtcgaga cagcgcacga tggcgctgcc gacgtcgtcg acccacaccg actggaaccg
     3121 ggtgccggcg ccggcgagcg gcagcacggg gaacaccgat tgaaggcggg cgaagagatt
     3181 cagaaatcgg tcgccttcgc cgaagacgac ggacgggcgc aggacggtca ggtcgagcgc
     3241 cttcgaggcg agagccgcct cgccggccgc cttggagcgc aggtagcggc tgggtgcctg
     3301 cgcgccggcg ccgagcgcgc tgacatgtac gacccgattc acgttcgcgg cggcgcacgc
     3361 ctgcgccagc cggcgcggca actgcacgtg gacgcgctcg aaggcggctt cgctgccgtg
     3421 caggatcgcg acgaggttga cgaccgaatc acagccccgc acgaggcggg cgagctgcgc
     3481 atcgtcgtgg atgtcggcct caaccagttc gaccgtcggc agcatctgga tgtgcttggc
     3541 ccgcgccggg cgtcggctcg gcaccaggat gcgggcgttg gcagcgccga agcgctcgac
     3601 cagcttttcg cacaggacgc gcccgacgaa gccggtgccg cccagaacaa gcacgttggt
     3661 catggctgcc tttgcggatg ccggcggcgc ggcgcctacg gcaggtcctt gtcgggcacg
     3721 gtgccggcgc cggccgggcc gatcgcgcgg cccagccgca gcttgagcgc cgttccgggg
     3781 ctacccatca acgcggcgta ccaggttgcg ttgctgagca ccttcttcac gtagtcgcgg
     3841 gtctcggcga agggaatgtt ctcggcccag gccgccggct cgagccacgg accctcgcgc
     3901 cacttgcgcg ggcgcccggg cccggcgttg taggccgctg cagccagtgc ctgcgagccg
     3961 ccgaagtcgt cgaggatgag cttgaggtag gcggtgccga gacgcaggtt ggtgtcgcgg
     4021 tcggcgatca ggccgggcgt gtaggccagg ccgatcttct tcgcggtcca gcgcgcggtg
     4081 gccggcatga tctgcatcag gcccgacgcg ccgacgcctg agcgcgcgtc catgatgaag
     4141 cgcgattcct ggcggatcag cccgtacacg taggccgcgt cgaggccgat ctcgcgcgcc
     4201 cgcgccgaga cctccttgcg aaacggcgtc gggaagcgct gttccatgtc gacctcggcg
     4261 cgggtgcgct cgctggtgtt gatgcagcgg tcccagacct cgcggtcgca agccatctgc
     4321 gcggcggcca gcaactcgcg gtcgctcatg ccgcgcagcg tgaagttcca ctcgcgtacg
     4381 ccctcgttgc gcaggccgat ggcgatcagc tgcaaggcgc gggcaaggcc cgggttcgca
     4441 cccgccgctt ccacctccgc cggcgtcagc ggcgccggcc gcagcggcag ggcgagcgct
     4501 tgcgccgcgt cctcggcggc gagcgtgccg tagaagttca actgtccgac cagactcgcc
     4561 agcaattcgc ggctcagtcc ccgcagggat tcgccgtcct gcgaatcctt cgccaatgcc
     4621 tgcagggcgc gggccttcca gtagacccag gccggctcgt gctgctcgct cgcgctcatc
     4681 gcgtcgctcg cctgcacccc ctgctgcccg cgcgcgcggc cgttgtcggc gc
//
LOCUS       DASVHM010000509         6576 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1047179, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000509 DASVHM010000000
VERSION     DASVHM010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6576
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1047179"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..337)
                     /locus_tag="VF308_09580"
     CDS             complement(<1..337)
                     /locus_tag="VF308_09580"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX7436948.1"
                     /translation="MTQVHQRTVLFADLRGSTSMYETLGNADATAVVTQSVALVASVV
                     EEHGGQVVKTLGDGLMAIFPSASAGVAAADDMHDSLARIGLPGEGPADSPERRPPVSL
                     KLQVGLAHGE"
     gene            complement(444..2645)
                     /gene="rpoD"
                     /locus_tag="VF308_09585"
     CDS             complement(444..2645)
                     /gene="rpoD"
                     /locus_tag="VF308_09585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEX7436949.1"
                     /translation="MTAKKPTPSKAASPAAKAKPVAVEAKKKTAPAAKVAEPVAKGKG
                     VVASKGAAAKKGKADDKGAKPEASDVDLSDLESELEGEPVVVEADVAAKAKPLRMKVS
                     RAKERALMREFGLDETQLTEEEVAKRRQELKTLIKMGKTRGFLTHQEINDHLPEKLVD
                     HEILEAIVSMLNDMGIAVYEQAPDAATLLIAGGGATTATEEEAEEAAEAALSTVDSEF
                     GRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLQAMMLAISASPTTIAEILVYAD
                     RIASGEMKISEAVDGFVSEGEADDYVAEEDVDFFDEEDDDDGNGGSKALTKKLEELKA
                     AALVKFDSLRINFEKMRRAFEKDGYQSPAYNRAQQAISSELMTIRFTVKTIEKLCAIL
                     RSQVEDVRRYERELRKILVDKCGMPQDYFIKNFPPNILNLKWAEKEAAAGKSYSVILV
                     RNLPPVQELQKKLTEQQARAVVPLEDLKKINKRMNEGERSSRDAKKEMIEANLRLVIS
                     IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
                     RTIRIPVHMIETINKMNRLSRQHLQEFGFEPDAPTLAEKMEIPEDKIRKIMKIAKEPI
                     SMETPIGDDDDSHLGDFIEDTNNTAPIEAAMQAGLRDVVKDILDSLTPREAKVLRMRF
                     GIEMSTDHTLEEVGKQFDVTRERIRQIEAKAIRKLKHPSRSDKLRTYLDTL"
     gene            complement(2972..4726)
                     /gene="dnaG"
                     /locus_tag="VF308_09590"
     CDS             complement(2972..4726)
                     /gene="dnaG"
                     /locus_tag="VF308_09590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEX7436950.1"
                     /translation="MIPPAFVHELLTRVDIVEIVGRSVELKRAGSTWKGLCPFHGERS
                     PSFTVTPSRQTYHCFGCGVHGNAVGFLMEQHGMGFVEAVRDLAQQAGLTVPEEAGQPG
                     DREEAARQKQKQLTLSDVLARAAEGYRRQLKASDRAIAYLKGRGLSGEVAARFGLGYA
                     SDGWRGLASVFPSYDDPLLEESGLVISHDGDPPSGDGDEGAGKKRYDRFRDRIMFPIR
                     SVQGSVIGFGGRVLDRGEPKYLNSPETPVFSKGRELYGLFEARTAIRQRGHALVVEGY
                     MDVVALTQAGFENAVATLGTACTAEHVQKLVRFTDSVVFSFDGDAAGRRAAGRALEAS
                     LPHAVDTRTFRFLFLPAEDDPDSFVRERGAEAFEQAIAAAVPLSRQIVALAGEDVDLA
                     TAEGRARFLANGRPLWSALPDGMLKRQLLGEFASRGALPVDELAAAWRATRPGGTIGA
                     PGMRSAPAGRPTPSRRGARPPMRQPADRIAWMLLLESGWWETLSGVDHAALCALPGWH
                     GELFRFLDRQSTEHGAQPWAALRERLAGEPWAAAALALVDTEDPAIEPLAEDLPRSLD
                     QLRAAPERQDAMRVLGRI"
     gene            complement(4843..5157)
                     /locus_tag="VF308_09595"
     CDS             complement(4843..5157)
                     /locus_tag="VF308_09595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H-NS histone family protein"
                     /protein_id="HEX7436951.1"
                     /translation="MATLQELMAQREALERQIEQTKKQERGDAVEKVRALMAEYGLTV
                     ADLGNRSTGSKAKKGKSTGNKVAAKYRNASTGESWSGRGLQPRWLKAALASGRKLSDF
                     AI"
     gene            complement(5217..5489)
                     /locus_tag="VF308_09600"
     CDS             complement(5217..5489)
                     /locus_tag="VF308_09600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008904189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HEX7436952.1"
                     /translation="MARTVQCLYLKREAEGLDFAPYPGELGKRIYASVSKEAWAAWMK
                     HQTMLVNENRLNLADQRARQYLARQMENFFFGAGAEQPSGYVPPTS"
     gene            complement(5538..>6576)
                     /gene="argA"
                     /locus_tag="VF308_09605"
     CDS             complement(5538..>6576)
                     /gene="argA"
                     /locus_tag="VF308_09605"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004042 - acetyl-CoA:L-glutamate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HEX7436953.1"
                     /translation="GQLRFEIEAAFSQGLPNTPMANAIVRVVSGNFLTAQPVGIVDGV
                     DFMHSGIVRKVDAAAIRRAIDIGAMLLLSPFGFSPTGEAFNLTMEDVATSTAIALQAD
                     KLLFVTETAGIHEDPADPESPIDTELALADAEKLLAALPPPLVPTDTAFYLRHCVRAC
                     RGGVERSHILPFAIDGSLLMEVFTHDGIGTMVVDEKLESLRQATPDDIGGVLHLIEPF
                     ERDGTLVKRDRTEIERDIGDYTVIEHDGVIFGCAALYPYPESKTGEMAAFTVSPQVQS
                     QGDGERILKRVEQRARALGLESIFVLTTQAMHWFIKRGFVQADADWLPEARKRKYNWD
                     RRSQVFVKKLT"
BASE COUNT          915 a         2182 c         2262 g         1217 t
ORIGIN      
        1 cctcgccgtg ggccaggccg acctgcagct tgagcgagac cggagggcgc ctttccgggc
       61 tgtcggccgg cccttcgccg ggcaggccga tgcgggccag cgagtcgtgc atgtcgtcgg
      121 cggccgcgac cccggccgat gcgctgggaa agatcgccat caggccgtcg ccgagggtct
      181 tgacgacctg gccgccgtgc tcctcgacga cgctggcgac gagggcgacg ctttgcgtga
      241 cgacggccgt cgcgtctgcg ttgccgagcg tctcgtacat cgacgtgctg cctcgcaggt
      301 cagcgaagag cacggtacgt tggtggacct gggtcatgcc ggaaagggcc tgcagcgcat
      361 cgctgcgaag tttatagcgc ggcgggccag caaaaagggt tccggcctcg cggcgggaac
      421 ccttgttgca agcttgcaaa cgctcagagc gtgtcgaggt aggtacgcag cttgtcggag
      481 cggctcgggt gcttgagctt cctgatcgcc ttggcctcga tctggcggat ccgctcgcgc
      541 gtgacgtcga actgcttgcc gacttcctcg agcgtgtggt cggtcgacat ctcgatgccg
      601 aagcgcatgc gcagcacctt ggcctcgcgc ggcgtcagcg agtcgaggat gtccttgacg
      661 acgtcgcgca ggccggcctg catcgccgcc tcgatcggcg ccgtgttgtt ggtgtcctcg
      721 atgaagtcgc ccaggtgcga gtcgtcgtcg tcgccgatcg gcgtctccat ggagatcggc
      781 tccttggcga tcttcatgat cttccggatc ttgtcttccg ggatctccat cttctcggcc
      841 agcgtcggcg cgtcgggctc gaagccgaac tcctgcaggt gctggcgcga caggcggttc
      901 atcttgttga tcgtctcgat catgtgcacc gggatgcgga tcgtgcgcgc ctggtcggcg
      961 atcgagcgcg tgatcgcctg gcggatccac cacgtcgcgt aggtcgagaa cttgtagcca
     1021 cgccggtact cgaacttgtc gaccgccttc atcaagccga tgttgccttc ctggatcagg
     1081 tcgaggaact gcaggccgcg gttggtgtac ttcttggcga tcgagatcac gaggcgcagg
     1141 ttggcctcga tcatttcctt cttggcgtcg cgcgaagacc gctcgccctc gttcatccgc
     1201 ttgttgatct tcttcaggtc ctcgagcggg acgacggcgc gcgcctgctg ctcggtgagc
     1261 ttcttctgca gctcctgcac cggcggcagg ttgcgcacca ggatcacgct gtacgacttg
     1321 cccgccgccg cttccttctc ggcccacttc aggttgagga tgttgggcgg gaagttcttg
     1381 atgaagtagt cctgcggcat gccgcacttg tcgaccagga tcttgcgcag ctcgcgctcg
     1441 tagcggcgca cgtcctcgac ctgcgagcgc aggatcgcgc agagcttctc gatcgtcttg
     1501 acggtgaagc ggatcgtcat cagctcggag ctgatcgcct gctgggcgcg gttgtacgcc
     1561 ggcgactggt agccgtcctt ctcgaacgcg cgccgcatct tctcgaagtt gattcgcagc
     1621 gaatcgaact tgaccagcgc cgctgccttc agctcctcga gcttcttggt cagcgccttc
     1681 gagccgccgt tgccgtcgtc gtcgtcttcc tcgtcgaaga agtcgacgtc ttcctcggcg
     1741 acgtagtcgt cggcctcgcc ttcggagacg aagccgtcga cggcctccga gatcttcatc
     1801 tcgcccgagg cgatgcggtc ggcgtagacc aggatctcgg cgatcgtcgt cggcgacgcg
     1861 ctgatcgcca gcatcatcgc ctgcaggccg ccttcgatcc gcttggcgat ctcgatctcg
     1921 ccttcgcgag tcagcagctc gacggtgccc atctcgcgca tgtacatgcg caccgggtcg
     1981 gtcgtgcggc cgaactcgga gtcgacggtc gagagcgcgg cctcggcggc ttcctcggct
     2041 tcttcctcgg tcgcggtggt cgcgccgccg ccggcgatca acagcgtcgc cgcgtcgggc
     2101 gcctgctcgt agacggcgat gcccatgtcg ttgagcatcg agacgatcgc ctcgaggatc
     2161 tcgtggtcga cgagcttctc gggcaggtgg tcgttgatct cctggtgggt caagaagccg
     2221 cgcgtcttgc ccatcttgat gagcgtcttc agctcctggc ggcgcttggc gacctcttct
     2281 tcggtgagct gggtctcgtc gaggccgaac tcgcgcatca gcgcgcgttc cttggcgcgg
     2341 ctgaccttca tccgcagcgg cttggccttg gcggcgacgt cggcctcgac gacgaccggc
     2401 tcgccctcga gctcggactc gaggtccgac aggtcgacgt ccgacgcctc cggcttggcg
     2461 cccttgtcgt cggccttgcc cttcttcgcc gcggcgccct tgctcgcaac gacgcctttc
     2521 cccttggcca cgggctcggc gaccttggcc gccggcgccg tcttcttctt cgcctcgaca
     2581 gcgacaggct tggctttggc agccgggctg gcggctttcg acggggttgg cttcttggcg
     2641 gtcatgcggt tcctcgaatg gtcatgggct ccacggcggc gagcccagct atcgaactgc
     2701 gcactttcat gcggaattca aggtcgtgtc ggttggcgcg aagcggcccg cgcggcgcga
     2761 ccccatgggt caaacgccgg tcgagccggt gcggggtgac tgacgacgca acctcgaggg
     2821 gttcgaccgt ccgatgctgc agcccttgcg gggaaggtgg ccttggggga tgaccctcga
     2881 tcaagagggt ggccggggcc ggaggtactg ccgtcacgct accgcgttcg cgaaagcctt
     2941 caattataca tcgaagactc taccgaggac ctcagattct cccgagcacc cgcatggcgt
     3001 cctgccgctc gggggcggcg cgcagctggt cgagcgagcg cggcaagtcc tcggcgagcg
     3061 gctcgatcgc cgggtcctcg gtgtcgacca gggcgagcgc cgccgccgcc cagggctcgc
     3121 ccgccaggcg ctcgcgcagc gccgcccacg gctgggcgcc atgctcggtc gactggcgat
     3181 cgagaaagcg gaacagttcg ccgtgccagc cgggcagggc gcaaagcgcc gcgtggtcga
     3241 cgccgctgag cgtctcccac cagccgctct cgagcagcag catccaggcg atgcggtcgg
     3301 ccggctggcg catcggtggt cgcgcgcccc ggcgcgacgg cgtcgggcgg ccggctggcg
     3361 ccgaacgcat gccgggcgcg ccgatcgtgc cgcccggtcg ggtcgctcgc caagcggcgg
     3421 cgagctcgtc gaccggcagc gcgccgcgcg acgcgaactc gccgagcagt tggcgcttga
     3481 gcatgccatc gggcagcgcc gaccagagcg ggcgaccgtt ggcgaggaag cgcgcccgcc
     3541 cttcggcggt ggcgaggtcg acgtcttcac cggcgagggc gacgatctgg cgcgacagcg
     3601 gcaccgccgc ggcgatcgcc tgctcgaacg cctcggcgcc gcgctcgcga acgaagctgt
     3661 cggggtcgtc ctccgcaggc aggaagagga agcggaaggt gcgggtgtcg acggcgtgcg
     3721 gcaggctcgc ctccagggcg cggccggcgg cgcgccggcc ggcggcgtcg ccgtcgaaac
     3781 tgaagacgac ggagtcggtg aagcgcacca gcttttgcac gtgctcggcc gtgcacgcgg
     3841 tgccgagcgt cgccacggcg ttttcgaagc cggcctgggt gagggcgacg acgtccatat
     3901 agccctcgac gacgagagcg tggccgcgct ggcggatcgc agtgcgcgcc tcgaacaggc
     3961 cgtacagctc gcggcccttg ctgaagactg gcgtctcggg cgagttgagg tatttgggct
     4021 cgccgcggtc gaggacgcgg ccaccgaagc cgatcaccga cccctggacc gagcggatcg
     4081 gaaacatgat ccggtcgcgg aagcggtcgt agcgcttctt gcccgcgccc tcgtcgccgt
     4141 cgcccgacgg cgggtcgcca tcgtgggaga tgaccaggcc gctctcctcg agcagcgggt
     4201 cgtcgtagct cggaaagacg ctcgccaggc cgcgccagcc gtcgctcgcg tagccgagac
     4261 cgaagcgggc tgcgacctcg ccgctcaggc cgcgaccctt gagataggcg atggcgcgat
     4321 cgctcgcctt cagctgacgc cgatatccct cggcggcacg cgccaggacg tcgctcaggg
     4381 tgagctgctt ctgcttctgc cgggccgcct cttcgcggtc gccgggctgg ccggcttctt
     4441 ccgggaccgt gagcccggcc tgctgggcca ggtcgcgaac ggcctcgacg aatcccatgc
     4501 cgtgctgctc catcaggaag ccgaccgcgt tgccgtggac gccgcagccg aagcagtgat
     4561 aggtctgacg cgagggggtg accgtgaagc tcggcgatct ttcgccgtgg aacggacaca
     4621 ggcccttcca ggtcgatccg gcgcgcttca gctcgaccga gcggccgacg atctcgacga
     4681 tgtcaacccg ggtcaggagc tcgtggacga aggcgggcgg gatcatggac tctggccggg
     4741 gcggcgcgca aggcgcgggc cgactccggc ttcaaaggcg cttcgtcatt ctcgctcgct
     4801 gacgcgagcc cgccgcagcg cccgagaggg cgccggctcg tgtcagatcg cgaagtcgct
     4861 gagcttgcgt ccgctcgcca gcgccgcctt cagccagcgc ggctgcagcc cgcggccgct
     4921 ccaggattcc ccggtcgagg cgttgcgata cttggccgcg accttgttgc cggtcgattt
     4981 gcctttcttc gccttgctgc cggtggatcg attgccgaga tcggcaacgg tgaggccata
     5041 ctcggccatc agggcacgaa ccttctcgac cgcgtcgccg cgttcctgtt tcttggtttg
     5101 ctcgatctgc cgttcgagcg cttctctctg ggccatcagt tcctggagtg tcgccacggg
     5161 gaatcctttg ttcgagttcc ggagccgaat cccggcggcg agattgtagg agggtttcag
     5221 gaggtcggcg gtacatatcc gctcggctgc tcggcgccgg caccgaagaa gaaattctcc
     5281 atctggcgcg ccaggtattg gcgcgcacgc tggtcggcga gattgaggcg attctcgttg
     5341 acgagcatcg tctggtgctt catccaggct gcccacgcct ccttgctgac cgaggcgtag
     5401 atacgcttgc cgagctcgcc aggatagggc gcgaaatcga ggccctcggc ctcgcgtttc
     5461 agatataggc attgcaccgt tcttgccatg tccgcctccg ggcgtttccg ccctggttct
     5521 tgctgtcgaa tatcagatca ggtgagtttc ttgacgaata cctgcgagcg ccggtcccag
     5581 ttgtattttc gcttgcgtgc ctccggcagc caatcagcgt cggcctggac gaaaccccgc
     5641 ttgatgaacc agtgcatcgc ctgcgtcgtc agcacgaata tgctttccag gccgagcgcg
     5701 cgggcgcgct gctcgacccg cttcaatatc ctctcgccat ccccctggct ctggacctgg
     5761 ggcgataccg tgaatgccgc catttcgccg gtcttgcttt cgggataggg atagagggcg
     5821 gcgcagccga atatcacgcc gtcgtgctcg atcaccgtgt agtcgccgat gtcgcgctcg
     5881 atctcggtcc ggtcgcgctt gaccagggtg ccgtcgcgct cgaacggctc gatcagatgg
     5941 agcacgccgc cgatgtcgtc gggcgtcgcc tggcgcaggc tctcgagctt ttcgtcgacc
     6001 accatcgtgc cgatgccgtc gtgcgtgaac acctccatga gcagcgaccc gtcgatcgcg
     6061 aacggcagga tgtgagagcg ctccacgccg ccgcggcagg cgcgcacgca gtggcgaagg
     6121 tagaacgccg tgtcggtcgg gacgagcggc ggcggcaagg cggcgagcag cttctcggcg
     6181 tcggcgaggg cgagctcggt gtcgatcggc gactcggggt cggccgggtc ctcgtggatg
     6241 cccgcggtct cggtgacgaa cagcagcttg tcggcctgca gtgcgatcgc cgtgctcgtc
     6301 gcgacgtctt ccatcgtcag gttgaacgcc tcgccggtgg gcgagaagcc gaacggcgag
     6361 agcagcagca tcgcgccgat gtcgatcgcg cgccggatcg ccgcggcgtc gaccttgcgg
     6421 acgatgccgc tgtgcatgaa gtcgacgcca tcgacgatcc cgaccggctg ggccgtgagg
     6481 aagttgcccg agacgacgcg gacgatggcg ttggccattg gcgtgttggg caggccctgc
     6541 gagaacgcgg cctcgatctc gaagcgcagc tgcccg
//
LOCUS       DASVHM010000510         1605 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_830210, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000510 DASVHM010000000
VERSION     DASVHM010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_830210"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VF308_09610"
     CDS             <1..223
                     /locus_tag="VF308_09610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEX7436954.1"
                     /translation="FDAERRFDEPYIPAEGNKACACPAILRGAKKPSDCKLFGRACTP
                     ETPLGSCMVSSEGACAAYYSYGRMRERTQ"
     gene            220..1278
                     /gene="hypE"
                     /locus_tag="VF308_09615"
     CDS             220..1278
                     /gene="hypE"
                     /locus_tag="VF308_09615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018314847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEX7436955.1"
                     /translation="MNFASRAPRFATRRLDLAAGRVDLTHGAGGRAMQQLIAEIFHPA
                     FDNPMLARGDDHAVFEVPAGRMVMSTDSFVVSPLFFPGGDIGSLAVHGTVNDVAMSGA
                     RPLYLSAGFVIEEGFPLGDLQRIARSMGEAASAAGVAVVTGDTKVVERGKADRLFINT
                     AGIGVVPPGIDISGDRARPCDAILISGSMGDHGVAIMAHRAGLEFETTIVSDSAALNG
                     LVADMVAAVPTVRVLRDPTRGGLAATLNEICDQSAVGMRLDEAAIPIRPEVLGACELL
                     GLDALNVANEGKLVAIAPAEDTARLLGVLRRHPLGRDAAVIGEVITDPARFVRMTTRI
                     GGERIVDWLAGEQLPRIC"
     gene            1286..>1605
                     /locus_tag="VF308_09620"
     CDS             1286..>1605
                     /locus_tag="VF308_09620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018314845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation protein"
                     /protein_id="HEX7436956.1"
                     /translation="MRILLLATSFNALTQRIYVELAERGHELSVELDVNDNSVTEAVR
                     LFRPDLVIAPFLRRAIPEAVWRTVRCLIVHPGPVGDRGPAALDWAILEGHAAWGTTLI
                     EANAT"
BASE COUNT          244 a          555 c          522 g          284 t
ORIGIN      
        1 cttcgatgcc gagcgccgct tcgacgagcc ctatatcccg gccgagggaa acaaggcctg
       61 cgcctgcccg gcgatcctgc gcggcgccaa gaagcccagc gactgcaagt tgtttggccg
      121 tgcctgcacg ccggaaacgc cgctcgggtc ctgcatggtg tcctcggagg gcgcctgcgc
      181 cgcttattat agttacggcc ggatgcggga gcgcacacaa tgaacttcgc ttcccgtgcg
      241 ccacgcttcg ccacacgccg gctggatctt gcggccggtc gcgttgatct cacgcacggg
      301 gcgggcggac gcgccatgca gcagctcatc gcagagattt ttcacccggc cttcgacaac
      361 ccgatgctgg cacgcggcga cgaccatgcc gttttcgagg ttccggccgg acgcatggtg
      421 atgtcgaccg attccttcgt ggtctctcca ctgttctttc cgggaggcga catcggctcg
      481 ctcgccgtcc acggtaccgt caacgacgtc gccatgagcg gcgcgcggcc gctctatctc
      541 tcggccggat tcgtcatcga agagggcttt ccgctcggcg atctgcagcg aatcgcccgt
      601 tcgatgggcg aggccgcaag cgccgccggc gtcgccgtcg tcaccggcga caccaaggtc
      661 gtcgagcgcg gcaaggccga ccgcctcttc atcaataccg ccggcatcgg cgtcgtgcca
      721 cccgggatcg atatctcggg cgatcgcgcg cggccttgcg atgcgatcct gatctcgggc
      781 agcatgggcg atcacggcgt cgccatcatg gcgcaccggg ccggccttga attcgagacc
      841 actattgtgt cggattccgc ggcgctgaac ggcctcgtcg ccgacatggt ggccgcggtg
      901 ccgaccgtcc gcgtattgcg ggatccgacc cgcggcggcc ttgcggcaac gctcaatgaa
      961 atctgcgatc aatcggcggt ggggatgcgg ctcgacgaag ccgcgattcc aataaggcct
     1021 gaagttctcg gggcatgcga gctgctcggt ctcgacgcct tgaacgtcgc caacgagggc
     1081 aagctcgtcg cgatcgcgcc ggccgaagac accgcgcgtc tgctcggcgt ccttcgacgc
     1141 catccgctcg gtcgcgatgc cgcggtgatc ggcgaagtga tcaccgaccc ggcgcgcttc
     1201 gtgcgcatga cgacccggat cggcggcgag cgcatcgtcg actggctcgc cggcgagcag
     1261 ctaccgcgta tctgctgagg gtacaatgcg gatcctgttg ctcgccacca gcttcaacgc
     1321 gctgacccag cgcatttacg tcgagctcgc cgagcgcggc cacgaacttt cggtcgagct
     1381 tgacgtcaac gacaacagcg tgaccgaagc cgtgcgcttg tttcggccgg atctcgtgat
     1441 cgcgccgttc ctgcgccgtg ccatcccgga ggcggtctgg cgcacggtgc gctgcctgat
     1501 tgtccatccc ggcccggtcg gcgaccgcgg ccccgccgcg ctcgactggg cgatcctcga
     1561 aggccatgcg gcgtggggca caacgttgat cgaggccaat gccac
//
LOCUS       DASVHM010000511         3944 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_686615, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000511 DASVHM010000000
VERSION     DASVHM010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3944
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_686615"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..366
                     /locus_tag="VF308_09625"
     CDS             <1..366
                     /locus_tag="VF308_09625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436957.1"
                     /translation="FSAAVLGSLPTSAGLVWTDGAGGSAVTFSAFGPLGELLFTQTRS
                     GFPDNSNNGETAEDRFFGVVNAGISSIFMSDPGGGIEVDHLQYGAATTVTGVPEPQTH
                     ARVPAGLAAVAWVGRRRRS"
     gene            664..2388
                     /locus_tag="VF308_09630"
     CDS             664..2388
                     /locus_tag="VF308_09630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007854342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX7436958.1"
                     /translation="MYAQFFELKQNPFSIAPDPRYLFMSKRHREALAHLLYGLDGGGG
                     FVLLSGEIGAGKTTVCRCFLEQIPKHCNVAYIFNPKLTVNELLKSVCDEFGVPNRPQG
                     PGPATVKDYLDPLNEFLLKTHAVGQNNILIIDEAQMLSAEVLEQLRLLTNLETNERKL
                     LQIVLIGQPELRTMLARPELEQLAQRVVARFHLKALGAAETTQYIRHRLAVAGMTGGM
                     PFDRAALDRIHTLARGIPRRINLLCDRAMLGAYSRGTHRIGREMVDKAAVEVFGRSEP
                     VTGASKPRRLVLLGAGLGLVAAAALYVGTLLLPDLSAHRPAAAPAASKAASDASMARS
                     PRSRDVAAGTAAQPAPWPAPASTPGTTANVAAPMSISGADLKHEFKTVLRDEKEAWRE
                     LGLLWNLDLGTGEPCEAAQRHQVRCFKSTSTLAFVRTLGRPGILNLRDDENRTVYALL
                     IGLTDQAAVLQMGGMSNTVSLVSLAKLWQGDFATFWRVPQGYAGSVGEGASGPMVDHL
                     AAQLASLTGERDPIGQQTMNAALRAKVARFQSAHGIKAVGIAGPTTFMQLNRATGLDE
                     PSLRIQAP"
     gene            2419..3081
                     /locus_tag="VF308_09635"
     CDS             2419..3081
                     /locus_tag="VF308_09635"
                     /inference="COORDINATES: protein motif:HMM:NF027851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general secretion pathway protein GspB"
                     /protein_id="HEX7436959.1"
                     /translation="MSYILDALRRAEAERERGTVPSIHAQQFALVPGEDEAGGRPKAL
                     LWVIAGLASALLAALAWNFLGRDTTPMAAPAQTPPATIPAAGPPAALPAPTIAASPSR
                     PAAPAMAPSTAPLPVSNAARSVRKPAGKAAAPAASAGAASSASRVATLRELPDEIRKT
                     LPNVTVSGSTYSNDSANRMLMINGQIFHEGDEVASGLVLQQIKPRSAVFAYKGYRYEI
                     AF"
     gene            complement(3103..>3944)
                     /locus_tag="VF308_09640"
     CDS             complement(3103..>3944)
                     /locus_tag="VF308_09640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HEX7436960.1"
                     /translation="LAVSYNSLEGYAASLQDALTRPYPPYEKVGIRNPGGDYNQLGTS
                     LLQIENEFYGTIRPKRVIRIGERPLHALRERGVEYVEVRCMDLDPFVPVGIGSQTVRF
                     LDVFLLHCLLAESPPDTPEEIVALARNQHRAAARGREPGLRLERGAGETLLTDWGAEL
                     IEDSAPIAAALDSVHGGDAYAQALHAAAAALAKPATLPSARVLDTMAKDFDGSFLGFA
                     RAQSEQIKRALLRLAFPAEAQVRLAALARLSIDTQKRIEAADTVPFEIFRQEYLDTKR
                     LNV"
BASE COUNT          604 a         1417 c         1331 g          592 t
ORIGIN      
        1 ttcagcgctg cggtgctcgg ttccttgccg accagcgcgg gcctggtctg gaccgatggc
       61 gcaggcggca gcgcggtcac gttctcggcc ttcggcccgc tcggcgagtt gctgttcacg
      121 cagacccgga gcggctttcc cgacaactcc aacaacggcg agaccgcgga agaccgcttc
      181 tttggtgtcg tcaacgccgg catctcgtcg atcttcatga gcgatcccgg tggcggcatc
      241 gaggtcgatc atctgcaata cggcgccgcc acgaccgtca ccggcgtgcc ggagccgcag
      301 acgcatgcgc gggtgccggc cggcttggcc gcggttgcgt gggtggggcg acgccgccgg
      361 agctgaatcg ccgcctggct cgacaggtgc gagccatcac cccgccggca ccatccgtga
      421 agtcacattc gccgcatcgg catgcggccc gtcggcatgc tcgaatcccg cctcccccgc
      481 atcggccaga gcggcgcgcc ggcaacctct tcgattgcgc aacggccctg cggcgctggg
      541 cgctggcacg agcggcctga agcgtcgcct ggcggaaccg gtgggctccg ccatcccggg
      601 caggcgcgcc ggcatgccgc tcacgcaatg gggccgcctg ctggcgtcgc atatcctttg
      661 cacatgtacg cgcaattctt cgagctgaag cagaatccgt tctcgatcgc gcccgatccg
      721 cgctacctgt tcatgagcaa gcgccatcgc gaggcgctcg cgcacctgct ctacggcctg
      781 gacggcggcg gcggcttcgt gctgctgagc ggcgagatcg gggccggcaa gacgacggtc
      841 tgccgctgct ttctcgagca gatcccgaag cactgcaacg tcgcctacat cttcaacccg
      901 aagctcacgg tcaacgagct gctgaagtcg gtgtgcgacg aattcggcgt cccgaatcgg
      961 ccccagggcc cggggccggc gaccgtcaag gactacctcg atccgctcaa cgaattcctg
     1021 ctcaagaccc atgcggtcgg gcagaacaac atcctcatca tcgacgaggc gcagatgctc
     1081 tcggccgaag tgctcgagca attgcggctg ctcaccaacc tcgagacgaa cgagcgcaag
     1141 ctgctgcaga tcgtcctgat cggccagccc gagctgcgca cgatgctcgc ccgccccgag
     1201 ctcgaacagc tggcccagcg cgtcgtcgcg cgcttccacc tgaaggcgct cggcgcggcc
     1261 gagaccacgc agtacatccg gcaccggctc gccgttgccg gcatgacggg cggaatgccg
     1321 ttcgaccgcg cggcgctgga ccgcatccac acgctcgcac gcggcatccc gcgccgcatc
     1381 aacctgctct gcgaccgggc gatgctgggc gcctattcgc gcggcaccca tcgcatcggc
     1441 cgcgagatgg tcgacaaggc cgcggtcgag gtgttcggcc gctccgaacc agtcaccggc
     1501 gcatcgaagc cgcggcgtct ggtcttgctc ggggccgggc tcggcctggt cgcggcggcg
     1561 gcgctctacg tcggcaccct cctcctgccg gacctgagcg cacaccgtcc cgctgcggcg
     1621 ccggccgcct ccaaggcggc ttcggacgca tcgatggcga gatccccgag gagccgcgac
     1681 gtggccgccg gcaccgccgc ccagccggcg ccatggccgg cacccgcctc gacgccgggc
     1741 acgacggcaa acgtagcggc gccgatgtcg atatccggcg cggatctgaa gcatgagttc
     1801 aagaccgtgc tgcgcgacga gaaggaggcg tggcgcgaac tcgggttgct ctggaacctc
     1861 gatctcggca ccggcgagcc ctgtgaagcc gcgcagcgcc atcaggtgcg ctgcttcaag
     1921 agcacgagca cgctcgcgtt cgtgaggacc ctcggccgcc ccggcatcct caacctgcgc
     1981 gacgacgaga accgcaccgt ttacgcgctg ctcatcggcc tgaccgacca ggccgccgtg
     2041 ctgcagatgg gaggcatgtc gaacaccgtt tcgctggtct cactcgccaa gctctggcag
     2101 ggcgacttcg cgaccttctg gcgcgtgccg cagggctacg ccggctcggt cggtgaaggc
     2161 gcttcgggcc cgatggtgga ccatctggcg gcgcagctcg ccagcctcac gggcgaacgg
     2221 gacccgatcg gccagcagac catgaatgcg gcgctgcgcg ccaaggtcgc gcgctttcaa
     2281 tccgcgcacg gcatcaaggc cgtcggcatc gccgggccca cgaccttcat gcagctcaat
     2341 cgcgccaccg gcctggacga gccgtcgttg cgcatccagg cgccctgagg ggcgcgcgga
     2401 catcaacaga aagcatccat gtcgtacatc ctcgatgccc tgcgccgcgc cgaggccgag
     2461 cgcgaacgcg gcacggtgcc gagcatccat gcgcagcaat tcgcattggt tccgggtgag
     2521 gacgaagcgg gggggcgccc gaaggcgctg ctctgggtca tcgccggcct cgcctcggcg
     2581 ctgctcgctg cgctggcgtg gaatttcctc ggccgcgaca cgaccccgat ggccgcgccg
     2641 gcgcagacgc cgccggccac catcccggcg gcaggcccgc cggcggctct cccggcgccc
     2701 acgatcgcgg cctcgccgag ccggcccgct gcgcccgcga tggccccctc caccgcaccg
     2761 cttccggttt ccaacgccgc ccgatcggtg cgcaagccgg ccggcaaggc cgcggcaccg
     2821 gccgcgtccg caggcgccgc atcgagcgcc tcgcgcgtcg cgacgctgcg cgagctcccc
     2881 gacgagattc gcaagacctt gccgaacgtg accgtgagcg gctcgaccta ttcgaacgac
     2941 agcgccaacc ggatgctgat gatcaatggc cagatcttcc acgaaggcga tgaggtcgcg
     3001 tcgggcctcg tgctgcagca gatcaagccc cggtctgcgg tgttcgcgta caagggctat
     3061 cgctacgaga tcgccttctg agcctggcag cgtcgctgcg gctcagacgt tgagccgttt
     3121 cgtgtccagg tactcctgac ggaagatttc gaagggcacc gtgtccgcgg cctcgatgcg
     3181 cttctgcgtg tcgatcgata ggcgcgcgag agccgcgagc cgcacctgcg cctcggccgg
     3241 aaacgccagg cgcagcagcg cgcgcttgat ctgctcggac tgggcgcgcg cgaagccgag
     3301 gaaggaaccg tcgaagtcct tcgccatcgt gtcgagcacg cgcgcagaag gcagcgtcgc
     3361 gggcttggcc agcgcggcag cggcggcatg caaggcctgc gcatacgcgt cgccgccgtg
     3421 taccgagtcg agggccgcgg cgatcggggc actgtcttcg atcaactccg cgccccagtc
     3481 ggtgagcaac gtttcgccgg cgccgcgctc gagcctgagg ccgggctcgc gcccgcgcgc
     3541 ggcggcgcgg tgttggttgc gcgccagcgc gacgatttct tcgggcgtgt cgggcgggct
     3601 ctcggcgagc aggcagtgca gcaggaagac atcgaggaag cgcacggtct gcgagccgat
     3661 gccgaccggt acgaacgggt cgagatccat gcagcgcact tcgacgtact cgaccccgcg
     3721 ctcgcgcagc gcatgcagcg ggcgctcgcc gatccggatc acgcgcttcg ggcggatcgt
     3781 cccgtaaaac tcgttctcga tctgcagcag gctggtgccg agctggttgt agtcgccgcc
     3841 gggattgcgg atgccgacct tctcgtaagg cgggtaaggc cgcgtcagcg catcctgcag
     3901 cgaggccgcg tagccctcga ggctgttgta gctgaccgcg agcg
//
LOCUS       DASVHM010000512         1563 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_904958, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000512 DASVHM010000000
VERSION     DASVHM010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_904958"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..387)
                     /locus_tag="VF308_09645"
     CDS             complement(19..387)
                     /locus_tag="VF308_09645"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEX7436961.1"
                     /translation="MHGTLNHIVYADLAFLSRFTGIPAEVPELGVDLCADFAELRATR
                     EALDLRLRDWAATLEPEWLRDALTYTSKVDGRRGTVARWVLVVHLFNHQTHHRGQATT
                     LLAHTGLDMGSTDLPFMPAY"
     gene            complement(512..835)
                     /gene="cutA"
                     /locus_tag="VF308_09650"
     CDS             complement(512..835)
                     /gene="cutA"
                     /locus_tag="VF308_09650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HEX7436962.1"
                     /translation="MNCIVVVTTVGTREEARRIGSTLVERRLAACAQISEVESFYTWD
                     GALRNETEFRLELKTTDARYGAVEQAIRELHSYALPAIHAQPLAQVYPPYAAWVERGS
                     DDVAP"
     gene            complement(852..1256)
                     /locus_tag="VF308_09655"
     CDS             complement(852..1256)
                     /locus_tag="VF308_09655"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019658324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX7436963.1"
                     /translation="MPQTEAIRALLAPLFPGLMGVQLVEVSNERVVATLTVRPDLCTT
                     GDTLHGGAFMAFADALGGVATFVNLPPGARTTTIESSTKFLRGAPVGSTVRAECTAFH
                     KGRTTMVWQTLIRSADGKLCAVVTQTQLVIAA"
     gene            complement(1272..>1563)
                     /locus_tag="VF308_09660"
     CDS             complement(1272..>1563)
                     /locus_tag="VF308_09660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014005831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436964.1"
                     /translation="LLAALAALEAEALRQPFAAETATIDQAGITCAVTWGFTQRMLAE
                     IVDAAQYPALRAFSEGAEGLDAFAAAPFGATTMAMSASAPSAAAGVRSQASA"
BASE COUNT          241 a          520 c          553 g          249 t
ORIGIN      
        1 ttgcctctat tgtccggttc aataggccgg catgaacggc agatcggtgc tgcccatgtc
       61 cagacccgtg tgcgccagca aggtcgtcgc ctggccgcgg tggtgggtct ggtggttgaa
      121 caggtgcacc acgagcaccc agcgcgcaac cgtgccgcgc cggccgtcga ccttgctggt
      181 gtaggtcagg gcgtcgcgca gccattcggg ctcgagcgtc gcggcccagt cgcgcaggcg
      241 caggtcgagc gcctcgcgcg tggcgcgcag ctcggcaaag tcggcgcaga ggtcgacccc
      301 gagttcgggc acctcggccg ggatgcccgt gaagcgcgag aggaaggcga ggtccgcgta
      361 gacgatgtgg ttgagcgtgc catggatcga cttgaaaaag ctccccgatc acgcgagagt
      421 tcgccgcccg gcagcgtcgc gcacaaggcg tagaggcgcg cgttcatcca ttcgttgtac
      481 tgcgccatca cgacgcagaa atcggccgtg atcacggcgc gacgtcgtcc gagccgcgct
      541 cgacccaggc ggcatacggg ggatagacct gcgcaagcgg ctgcgcatga atggccggca
      601 acgcgtacga atgcagctcc cggatcgcct gctcgaccgc cccgtagcgc gcatcggtgg
      661 tcttcagttc gagtcggaat tcggtctcgt ttcgcagcgc gccgtcccag gtgtagaagc
      721 tctcgacctc cgagatctgc gcgcaggcgg cgagccggcg ttcgacgagc gtgctgccga
      781 tgcgccgggc ctcttcgcgc gtgccgaccg tggtgacgac gacgatgcaa ttcatcgcag
      841 gccgcgcgcc ttcaagccgc gatcaccagt tgcgtctgcg tcacgacggc gcagagcttg
      901 ccgtccgccg accggatcag cgtttgccag accatcgtgg tccggccctt gtgaaaggcc
      961 gtgcattcgg cgcggaccgt cgaaccgacg ggagcgccgc gcaggaattt cgtgctcgac
     1021 tcgatggtcg tcgtgcgcgc gccaggcggc aggttgacga acgtggcgac gccgcccagc
     1081 gcgtccgcga aggccatgaa ggcgccaccg tgcagggtgt cgcccgtcgt gcacaggtcg
     1141 ggtcgcacgg tcagggttgc gacgacccgc tcgttgctga cctcgaccag ctgcacgccc
     1201 atcaggccgg ggaagagggg cgcgagcagc gcccggatgg cttcggtttg gggcatgtcg
     1261 ggctccttgg gctacgcact cgcctgcgat cgcacgccgg cggcagcgga tggagccgaa
     1321 gcgctcatcg ccatggtcgt cgcgccgaaa ggcgccgccg cgaaggcgtc cagaccttca
     1381 gcgccttcgg agaacgcccg cagtgccggg tactgcgccg cgtcgacgat ttccgccagc
     1441 attctttgcg tgaagcccca ggtgacggcg caggtgatgc ccgcctggtc gatcgtcgcg
     1501 gtctcggccg cgaagggctg ccgcagcgcc tcggcttcga gcgctgcaag cgcggccagc
     1561 agt
//
LOCUS       DASVHM010000513         3491 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_180561, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000513 DASVHM010000000
VERSION     DASVHM010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3491
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180561"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(122..1165)
                     /locus_tag="VF308_09665"
     CDS             complement(122..1165)
                     /locus_tag="VF308_09665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007833821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX7436965.1"
                     /translation="MNRALRDAWHYARHAAMVAGFSAVIALGLGIAKGGDWDLQFAYS
                     ESIGLSIWACTDFGRLLFKRDPDSDWPAGWRAFALQVGAVIVGYVLGTWIGDQYCGCS
                     TFELWRRSARAFAGYLVLCIAVSASISFFFLARGRDQRRLRQIATAQRDASEAQLKLL
                     ESQLEPHMLFNTLANLRVLIGIDPPRAQAMLDQLIAFLRATLSASREPFHALAAEFAR
                     LSDYLQLMQMRMGERLQTRLTLPAALADLPVPPLLLQPLVENAIKYGLEPHVGGGRIE
                     VSAERVDGRILLRVRDTGAGLSGRAAAEGTRFGVAQVRQRLATIYGDAATLELTPAPD
                     AEGGTVATVTIPA"
     gene            complement(1162..2118)
                     /locus_tag="VF308_09670"
     CDS             complement(1162..2118)
                     /locus_tag="VF308_09670"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HEX7436966.1"
                     /translation="MNSLDKFLLFVALPTVVVTSLLEALVLARLRAYDWRASAVSLFD
                     LVARVAVQIFAPLSIATPFIVLAYQHRLGTIALDGWAALLALFVGQEFCYYWFHRAAH
                     RVRWFWCNHAVHHSSNQLNLAAAYRIGILSRLTGSTLCFVPLVWLGFPPRIVFEVLSL
                     NLLYQFWIHAAWIPKLGWLELVLNTPSAHRVHHAVNLEYLDANYGGVLIVFDHLFGTY
                     RAERDDVPCRYGLVEPMTGYNPLRIELRQWLLLGRDLLAARSLRAVLGLVWMPPGWNP
                     HGAGTTTEELRARAGASAAAPAARRGAASAGGPTAAMTPTAP"
     gene            complement(2179..2709)
                     /locus_tag="VF308_09675"
     CDS             complement(2179..2709)
                     /locus_tag="VF308_09675"
                     /inference="COORDINATES: protein motif:HMM:NF042671.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6622 family protein"
                     /protein_id="HEX7436967.1"
                     /translation="MPDLPLSIVITEIIRHTPGYVWALLAALVVLGGLQLRDHRVPRA
                     RLALAPVGLGAFSLLGATMAFGAHGGVVGAWVLGMALVFAANRFLRWPRDVRADGSGG
                     FALRGSPWPLVAMLGIFMLRYAVAVTLVFHREWATDTAFSLALALAYGALSGLFAARA
                     LRILRCAPTPRVYAAA"
     gene            complement(2858..3346)
                     /locus_tag="VF308_09680"
     CDS             complement(2858..3346)
                     /locus_tag="VF308_09680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1499 domain-containing protein"
                     /protein_id="HEX7436968.1"
                     /translation="MLIAKSILVVLFLVALAAVAAGQAGMLGGHAPTNLGVRDGRLKP
                     PSTTPNSVSSQADLYPDHTQRAYASLPPLPVKGSGPATMAKIKGIVESLGGAEIVRSE
                     PDYLYAQFTTRIMKFVDDTEFWFDPVANVIQVRSASRLGSKDFGVNRDRIETVRHRLA
                     AL"
BASE COUNT          572 a         1146 c         1315 g          458 t
ORIGIN      
        1 gacgttggcg acgatgcgca gttccggcca caggcgcgcc agttcgcgtt gcagttcggc
       61 agcgagcagc ggctcgtctt cggcgatcag ggcggtggcg ttcatgggca cgtcggtcgg
      121 ctcaggcggg gatcgtcacg gtcgcgaccg tgccgccttc ggcgtcgggc gccggcgtca
      181 gctcgagcgt cgcggcgtcg ccgtagatcg tggccaggcg ctgcctcacc tgggccacgc
      241 cgaagcgcgt gccttcggcc gcggcgcgtc cggaaagccc cgcgccggtg tcgcgcaccc
      301 gcagcaggat ccggccatcg acgcgctccg cgctgacctc gatgcggcca ccgccgacgt
      361 gcggctcgag cccgtacttg atcgcgttct cgaccagcgg ctgcagcagc agcggcggca
      421 ccggcaggtc ggcgagcgcc gcgggcagcg tcagccgagt ctgcaggcgc tcgcccatgc
      481 gcatctgcat cagctgcagg tagtcggaga gccgcgcgaa ctcggccgcg agggcgtgga
      541 acggttcgcg cgatgcgctg agcgtggcgc gcaggaacgc gatcagctgg tcgagcatcg
      601 cctgcgcgcg cggcgggtcg atgccgatca ggacgcgcag gttggcgagg gtgttgaaca
      661 gcatgtgcgg ttcgagctgc gattcgagca gcttcagctg cgcctcggac gcatcccgtt
      721 gcgccgtcgc gatctggcgc agccggcgct ggtcgcggcc gcgcgcgagg aagaagaacg
      781 agatcgaggc gctgaccgcg atgcacaaca ccaggtagcc ggcgaaggca cgcgccgagc
      841 gccgccagag ctcgaacgtc gagcagccgc agtactggtc gccgatccag gtgccgagca
      901 cgtagccgac gatgaccgcg ccgacctgca gcgcgaacgc gcgccagccc gcaggccagt
      961 ccgaatcggg gtcgcgcttg aagagcagcc gcccgaagtc ggtgcaggcc cagatgctga
     1021 ggccgatcga ttccgaatag gcgaattgca ggtcccaatc gccgcccttt gcgatgccga
     1081 ggccgagcgc gatgaccgcg ctgaagccgg ccaccatcgc ggcgtggcgc gcgtagtgcc
     1141 acgcgtcgcg cagcgccctg ttcatggcgc ggtgggtgtc attgcagcgg tgggcccacc
     1201 cgcggaggcg gcgccgcgcc gcgccgccgg cgcggcggcg ctcgcccccg cgcgcgcgcg
     1261 cagctcttcg gtcgtcgtgc cggcgccgtg cggattccag cccggcggca tccacacaag
     1321 gccgaggacg gcgcgcaggc tgcgcgccgc gagcaggtcg cggccgagca ggagccattg
     1381 acgcaactcg atgcgcagcg ggttgtagcc cgtcatcggc tcgaccagcc cgtaacggca
     1441 gggcacgtcg tcgcgttcgg cgcgatacgt gccgaagagg tgatcgaaga cgatcagcac
     1501 gccgccgtag ttggcgtcga ggtactcgag gttgaccgca tggtgcacgc ggtgcgccga
     1561 cggcgtgttg agtacgagtt cgagccagcc gagcttcgga atccaggccg cgtggatcca
     1621 gaactggtag agcaggttga gcgacagcac ttcgaagacg atgcgcggcg gaaaaccgag
     1681 ccagaccagc ggcacgaagc acagcgtgct gccggtcagc cggctgagga tgccgatgcg
     1741 gtacgccgcg gcgaggttca actggttcga cgaatgatgc accgcgtggt tgcaccagaa
     1801 ccagcgcacg cgatgcgccg cgcgatggaa ccagtagtag cagaactcct ggccgacgaa
     1861 gagggcgagc agcgcggccc agccatcgag ggcgatcgtg ccgagccgat gctggtaggc
     1921 gagcacgatg aacggcgtcg cgatcgagag cggcgcgaag atctgcaccg cgacacgggc
     1981 gacgaggtcg aacagcgaga ccgcgctggc gcgccagtcg taggcgcgca ggcgcgccag
     2041 cacgagcgcc tcgagcagcg acgtgacgac caccgtcggc agggcgacga agagcaggaa
     2101 cttgtcgagg ctgttcatgg cggttggcag tcgtgcgggc tgggcgaagt ctagagcgcg
     2161 gcgcttcggg atggtggctc aggccgcggc gtagacccgc ggagtcggtg cgcagcgcag
     2221 gatgcgcagc gctcgtgccg cgaagaggcc ggagagggct ccgtaggcga gggccagcgc
     2281 caggctgaag gccgtgtcgg tggcccattc gcggtggaag acgagcgtca ccgcgaccgc
     2341 gtagcgcagc atgaagatgc cgagcatcgc gacgagcggc caggggctgc cgcgcaatgc
     2401 gaagccgccg gagccgtcgg cccgcacgtc gcgcggccac cgcagaaagc gattcgccgc
     2461 gaagacgagg gccatgccga gcacccatgc gccgaccacg ccgccgtggg ctccgaacgc
     2521 catcgtcgcg cccaagagcg agaacgcgcc gagaccgacg ggagcgagcg ccagccgcgc
     2581 ccgtggcacg cggtggtcgc gcagctgcag gccgcccagg acgacgagtg cggcgagaag
     2641 ggcccagacg tagccgggcg tgtgcctgat gatttcggtg atgacgatcg agagcggcag
     2701 gtcgggcatg ggaactccag cggttgcgtg cggtgaggcc ggggtcggcg atgggcgcac
     2761 tgtgccgaag gggcccgccg gcggcgagcg cgatgcgatg aagcgccgcg ccgcggcgcg
     2821 aaatgccggg gcgccggcgt gaagcgcagc ggccggccta cagcgccgcg aggcggtgcc
     2881 gcacggtctc gatccgatcc cggttgacgc cgaaatcctt gctgcccaag cgcgaggccg
     2941 agcgcacctg gatcacgttg gcgaccgggt cgaaccagaa ctcggtgtcg tcgacgaact
     3001 tcatgatccg ggtcgtgaat tgcgcataga ggtagtcggg ctcgctcctg acgatctccg
     3061 cgccgcccaa gctctcgacg atgcccttga tcttcgccat cgtcgcgggc ccgctgccct
     3121 tcaccggcag cggcggcagg gaggcatagg cacgctgggt gtgatcggga tagaggtcgg
     3181 cctggctgga gacgctgttc ggcgtcgtcg agggcggctt caggcggccg tcgcgaaccc
     3241 caaggttggt cggtgcgtgg ccgcccagca tcccggcctg accggccgcc accgcggcca
     3301 gggcgacgag gaagagcacg acgagaatcg atttggcgat caacatcctg agtccgttcc
     3361 ggagggtggc tgcagcgcga ttgtgccgac tcccgaggct atattcgacc gggcgcgccg
     3421 accggcgccc ttgcgaggaa gatgccctga tgccgtcgac cgttctctcg cgccacgcct
     3481 tggtctggcc g
//
LOCUS       DASVHM010000514         4503 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1120972, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000514 DASVHM010000000
VERSION     DASVHM010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4503
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1120972"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1612
                     /locus_tag="VF308_09685"
     CDS             <1..1612
                     /locus_tag="VF308_09685"
                     /inference="COORDINATES: protein motif:HMM:NF015803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HEX7436969.1"
                     /translation="TPEQLQLKPLPAQPDASQLPAAPPIPRELGKPADEITLDVTAYA
                     VDPSAPEALRSALPALTAPFVGKARSYEDFVNAAAAVTRFLQRELGFYLGYAYLPEQA
                     PLGGVIRIALLEGRLDEVILNWPDKMPVNRAVVEAYLARLKSGEILRVRDVERVVFLV
                     NDLRGLTARFEIKAGRTPGTASLVVTPQPEDRIVSRVEVDTAGSRYSGVVRGSVLSTI
                     SSPTGQGDGLVMNALSSTTAGLMFGLAGYTLPVGSDGLKLGVSASYVRYQLDKSLLTL
                     DLHGDATTVTAYGLYPVIRSRNLNLFSLLSVDSKQFNDQQGPGLTQKKTSTDFQLSLS
                     GDARDNLLTGGVNTYELSGTRGSIKLPRGSSTDNSPDYTLGRLNVSRLQNLLSNRLLL
                     FMSLKGQLALKNLDSTEQFQAGGPDRVRAFAPGEGTGDSGEVVSIELRLLPPEAWFGR
                     IARELVFSAFYDAGTVKLRHDPAQTLLTKPDFVNKVSLTGWGIGGVWDRSRDFAVRLY
                     LAWPISGIPVNDPVEKKPRVYLTANKTF"
     gene            1792..>4503
                     /locus_tag="VF308_09690"
     CDS             1792..>4503
                     /locus_tag="VF308_09690"
                     /inference="COORDINATES: protein motif:HMM:NF017658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HEX7436970.1"
                     /translation="MAGPAFALPTGATVVAGQATVQTPSPTLQVITQGSDKAIIDWRS
                     FSIAAGEKVRFYQPSSTSVTLNRVTGYDPSSILGQMQSNGRIFLLNPQGVVFGAGARI
                     DVGGLVASSLSLSNADFLASRYSLSSVDAAARQTRGAVRNDGAISAPGGTVVLAGPSV
                     TNTGTIIANGGRVGLAAANAVSIDVEGDGLVFFQASATDAKNRLEQLGRIQADGGTAE
                     MRAAARGAFADTVLNVAGVVQAKSIGTREGRIVIDGGSKGITAVSGRLDASGRAAGER
                     GGTITVQGHDVLLDNGARLEASGDTGGGVIRVGGDFHGANPDVRNAEKTIVAPGAELH
                     ADALTQGDGGKIVVWADAATRYTGTASAKGGAQGGNGGFAEVSGKQSLDFSGSVDMRA
                     SRGSIGTLLLDPKDIVINLAGADPVAGNSLFTDNPTLTANLSAANVVAALNLASLVLQ
                     ANNDISVTTSVNASAAPATSNLTLQAGRTITFSNAVALTLGGGSVNLTYNDQTGVALQ
                     RGPGAGALTMNAASSIVTNGGGVTIARGTAGASAPIALTTLDTTGALDKPGGNVSVVS
                     ADSITVGTVTTSGGVVTAGGGRPAGTITLTSSAGSVTTTGALTSIGSAAFAGSATTGG
                     AGNVGTLNGSTGVTVGGAITTTGGAGDSAGAKGAGGAVSLTGGGAGGLTVSAAVTVNA
                     DDATIAVNGGGAAIQLNNSNLTTTNNTAAAITVRNATTAALGNLTTGATGTTTLGVGA
                     DITGAVTQTAATAITTGTLTGNTASTATLGNANALTTLGAFTTNGAFTLNDVGGGLGV
                     GGAVSTTNNGVASVATSGGNLSVAASGSVAGAGVSLTTTSANNIALSGPINGNAGTVT
                     LTSGQAITQIATGTINTTGDLVLSAAGAITLDQGNTIGRLGAVTRGGA"
BASE COUNT          781 a         1598 c         1474 g          650 t
ORIGIN      
        1 gacccccgaa cagttgcaac tcaagccgct gcctgcccag cctgacgcct cgcagttgcc
       61 cgccgcaccg ccgatcccgc gcgagctcgg caagccggcc gacgagatca cgctcgatgt
      121 cacggcctat gccgtcgatc cgagcgcacc cgaggcattg cgttctgcgc tgccggcgct
      181 caccgcacct ttcgtcggca aggcacgcag ttacgaggac ttcgtcaacg cggcggcggc
      241 ggtcacgcgg ttcctgcagc gcgagctggg cttctaccta gggtatgcct atcttcccga
      301 acaggcgcct ttgggcggcg tgatccgcat cgcgctgctc gaaggccggc tcgacgaagt
      361 gatcctgaac tggcccgaca agatgccggt gaaccgcgcg gtcgtcgaag cctatctcgc
      421 gcgtctgaag tccggcgaaa tcctgcgtgt gcgcgacgtc gaacgcgtcg tctttctcgt
      481 caacgacctg cgcggcctga ccgcgcgttt cgaaatcaag gccgggcgca ccccgggcac
      541 cgcctcgctc gtcgtgacgc cgcaacccga ggatcgcatc gtcagccgcg tcgaagtcga
      601 taccgccggc tcacgctatt ccggcgtggt tcgcggcagc gttctcagca cgatcagtag
      661 cccgacgggc cagggcgacg ggctggtgat gaacgccctg agctcgacca ccgcagggct
      721 gatgttcgga cttgccggct acacgctgcc ggtcggctcc gacgggctca aactcggcgt
      781 ctcggcttcg tacgtgcgct atcagctcga caagagcctg ctcacgctcg acctgcacgg
      841 cgatgcgacg acggtgacgg cctacggcct ttatccggtc atacgctcgc gcaatctgaa
      901 tctcttttcg ctgctctcgg tcgattccaa gcaattcaac gatcagcagg ggcccggcct
      961 gacgcagaag aagacctcga ccgacttcca gttgtcgctc tcgggcgatg cgcgcgacaa
     1021 cctgctgacg gggggtgtca acacctatga gctgagcgga acccgcggca gcatcaagct
     1081 gcccagaggc tccagcaccg acaactcgcc cgactacacg ctggggcgat tgaatgtgtc
     1141 gcgcctgcag aacctcctca gcaaccgcct gcttctgttc atgagcctga aaggccagct
     1201 ggcgctgaag aacctcgaca gcaccgagca gttccaggcc ggtggaccgg accgggtgcg
     1261 tgccttcgcg ccgggcgaag gcaccggcga ctcgggcgaa gtggtctcaa tcgaactgcg
     1321 ccttcttccg cccgaagcat ggttcggccg gatcgcgcgc gaactcgtct tttccgcgtt
     1381 ctacgacgcc ggcacggtaa agctgcgcca tgacccggcg cagaccctgc tgaccaagcc
     1441 cgatttcgtc aacaaggttt cgctgaccgg atggggcatc gggggtgtct gggaccgcag
     1501 ccgcgacttc gcggttcgcc tgtatctcgc ctggccgatc agcggcatcc cggtgaacga
     1561 tccggtcgag aaaaagccgc gcgtctacct gaccgcgaac aagacgttct gaacgccgtg
     1621 cgcgcccatg acgtcatcgt tccacccgct cggccgcaag gccccgcggt ttcccatcgc
     1681 ccgagggtga gctccatgaa gatttgccgc agcgccacag ccgccgtcag ccctcgcctc
     1741 actcgtggcg gattcgcgct gcacccgctg tgcgcggcag cgctgcttgc catggcgggc
     1801 cctgcattcg cgctgccgac cggcgccacg gtcgtggccg gccaggccac ggtgcagacg
     1861 ccctccccaa cgctgcaggt catcacgcag ggcagcgaca aggcgatcat cgactggcgc
     1921 agcttttcga tcgccgcggg cgagaaggtt cgcttctatc aaccgtcgag cacgtcggtc
     1981 acgctcaacc gcgtcacggg atacgacccg tcgtcgatcc tcggccagat gcagtcgaac
     2041 ggccgcatct tcctgctcaa tccgcaaggc gtcgtgttcg gcgccggcgc gcgcatcgat
     2101 gtgggcgggc tcgtcgcctc ttcgctcagc ctctcgaacg ccgacttcct ggcgagccgc
     2161 tacagcctca gctcggtcga cgcggccgcg cggcagaccc gcggcgcggt gcgcaacgac
     2221 ggcgccatat cggcaccggg cggcacggtc gtgctcgccg gcccgagcgt gacgaacacc
     2281 ggaacgatca tcgccaacgg cgggcgcgtc ggcctggccg cggccaacgc cgtatcgatc
     2341 gacgtcgaag gtgacggtct cgtcttcttc caggcgagcg ccaccgacgc gaaaaaccgc
     2401 ctcgaacagc tcggccgcat ccaggccgac ggcggcacgg ccgagatgcg tgcggcggcg
     2461 cgcggcgcct tcgcggacac ggtgctcaac gtcgccggcg tcgtccaggc gaagagcatc
     2521 ggcacgcgcg aaggacgaat cgtcatcgat ggcggcagca aagggatcac ggctgtctcg
     2581 ggccggctcg acgcctcggg tcgcgctgcc ggcgagcgcg gcggcacgat cacggtgcag
     2641 gggcacgatg tgctgctcga caacggcgcc cggctcgagg cgtcaggcga cacgggcggc
     2701 ggcgtcatcc gcgtcggcgg agatttccat ggcgcaaatc cggacgtgcg caacgccgag
     2761 aagaccatcg tcgcgccggg cgccgagttg cacgccgacg cgctgacgca aggcgacggc
     2821 ggcaagatcg tcgtctgggc cgacgctgcg acgcgctaca ccggcacggc aagtgccaaa
     2881 ggcggcgcgc agggaggcaa cggcggcttc gcggaagtgt cgggcaagca atccctcgac
     2941 ttctcggggt cggtcgatat gcgggcgtcg cgaggttcga tcggcaccct cctgctcgac
     3001 cccaaggaca tcgtgatcaa ccttgccggt gccgatcccg tcgccggcaa ttcgctcttc
     3061 acggacaacc cgaccttaac cgcgaacctg agtgcggcca acgtcgttgc cgcgctgaat
     3121 cttgcgagcc tcgttcttca ggcgaacaac gacatctcgg tcacgacgag cgtcaatgcg
     3181 tccgccgcgc cggcaacgtc caacctcact ctgcaagcgg gccgcaccat cacgttcagc
     3241 aacgctgttg cactgaccct cggaggcggg tcggtcaacc tcacttacaa cgatcaaacc
     3301 ggcgttgccc tgcagcgcgg ccccggtgcc ggagcgttga cgatgaacgc cgccagcagc
     3361 atcgtgacca acggcggagg cgtcacgatc gcgcgcggga ctgctggagc gagtgcgccg
     3421 attgcactga caacgctcga caccaccggg gcactcgaca aaccgggcgg caatgtcagc
     3481 gtcgtgtccg ccgactcgat cacggtcggc accgtgacga catcgggggg agtcgtgacc
     3541 gcgggcggtg ggcgcccggc gggaacgatc acgctcactt ccagcgcagg ctcggtcacc
     3601 acgacagggg cgctgacctc aatcggcagc gcagcattcg cagggtcggc gacaaccggc
     3661 ggcgcaggca acgtcggcac gctgaacggc agcaccggcg tcacggtcgg cggcgccatc
     3721 acgacgaccg gcggcgccgg cgacagcgcc ggcgccaagg gcgcgggcgg cgccgtttcg
     3781 ctgaccggcg gcggcgccgg cggcctcacg gtcagcgcgg ccgtcacggt caacgccgac
     3841 gacgcgacga tcgccgtcaa cggcggcggc gcggcgatcc agctcaacaa cagcaacctc
     3901 acgacgacca acaacacggc agcggcgatc acggtccgca acgcgacgac cgcggcgctc
     3961 ggcaacctca cgaccggcgc gaccggaacg acgactctcg gcgtcggcgc agacatcacg
     4021 ggtgcggtga cgcagaccgc ggcgacggcg atcacgacgg gcacgctcac cggaaacacc
     4081 gcgagcaccg ccacgctcgg caacgccaac gcgctcacaa cgctcggcgc gttcacgacg
     4141 aacggcgcgt tcacgctcaa cgatgtgggc ggcggcctcg gcgtcggcgg cgcggtctcg
     4201 acgaccaaca acggcgtcgc cagcgtcgcg accagcggcg gcaatctttc cgtcgccgcc
     4261 agcggcagcg tggccggcgc cggcgtttcg ctgacgacga cgagtgccaa caacatcgca
     4321 ctgagcgggc cgatcaacgg caacgccggt acggtcacgc tgacctcggg ccaggccatc
     4381 acgcagatcg cgaccggtac catcaacacg acgggtgacc tggtcctgag cgcggcgggt
     4441 gcgatcacac tcgaccaggg caacacgatc ggcaggctcg gcgcggtgac gcgaggtggt
     4501 gcg
//
LOCUS       DASVHM010000515         3785 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_469868, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000515 DASVHM010000000
VERSION     DASVHM010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3785
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469868"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..220)
                     /locus_tag="VF308_09695"
     CDS             complement(<1..220)
                     /locus_tag="VF308_09695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEX7436971.1"
                     /translation="MTRASALRLRPTMLSDLDFVISVEQDPANRPFITPWDRTQHEGA
                     IRFPDFRHFIVEAGAGYPSAGFVILQGCR"
     gene            complement(239..2224)
                     /locus_tag="VF308_09700"
     CDS             complement(239..2224)
                     /locus_tag="VF308_09700"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013517991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HEX7436972.1"
                     /translation="MATKPSASYGEASIRVLKGLEPVKQRPGMYTRTETPLHIVQEVI
                     DNAADEALAGHGKAIEVTLHADGSVSVTDDGRGIPFGLHPEERVSVVEIVFTRLHAGG
                     KFDKGGTGAYSFSGGLHGVGVSVTNALAKRLEVTVWRAGQVAQIAFAGGDVVEALAVR
                     KAAAGERRSGTTARVWPDPKYFESAELPRAELMHLLRSKAVLMPGVTVALVIEKSGRA
                     EPERQAWLYQGGLSDYLMRSLPADPVIPLFEGEHYADAGETENFAEGEGAAWSVAFTD
                     EGAPVRESYANLIPTVAGGTHESGLKDGLFGAVKGFIDMHALLPKGVKLMPEDVFSRA
                     SFVLSAKVLDPQFQGQIKERLNSRDALRLVSTCVKPALELWLSQHVDFGRKLADLVIR
                     QAQTRQRASLKVEKRRGSGVAVLPGKLTDCESRDLALNELFLVEGDSAGGSAKMGRDK
                     ETQAILPLRGKVLNAWEVERDRLFANNEIHDIAVAIGVDPHGPNDDPDLGGLRYGKVC
                     ILSDADVDGSHIQVLLLTLFFRHFPKLIASGHLYIAKPPLFRIDAPARGKKPATKIYA
                     LDEGELHATLDKLKKEGARANAWSISRFKGLGEMNAEQLWDTTLNPETRRLLQVEFGA
                     LGFAATVDSLSRLMGKGEAQARRDLMELHGDEVEVDV"
     gene            2301..2858
                     /locus_tag="VF308_09705"
     CDS             2301..2858
                     /locus_tag="VF308_09705"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019655987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX7436973.1"
                     /translation="MRATTGASAISPWVRRWSHLVAPGATVLDVACGPGRHVRWFAER
                     GCRVTGIDRDAAALEPLRSIADLRVADIENGPWPLPDACFDAVICTNYLWRALLPTLV
                     ASVAEGGVLIYETFSAGNETVGKPSNPDFLLRPGELLEAAGSLRVVAFEDGFVGAPDR
                     FVQRLVAARQDTARSPPRRWALQGE"
     gene            2901..3782
                     /gene="dapA"
                     /locus_tag="VF308_09710"
     CDS             2901..3782
                     /gene="dapA"
                     /locus_tag="VF308_09710"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEX7436974.1"
                     /translation="MKPIVGSIVALVTPMHEDGTVDYAVLRSLIDWQIAEGTQCIGVV
                     GTTGESPTVSVEEHCEIIRVAVEHVRGRVPVMAGTGGNSTAEAIELSRFAAKVGADCT
                     LSVVPYYNKPSQEGIYRHFRAIAEAADIPMLLYNVPGRTVADMQTETALRLAQVPGIV
                     GIKEATGDIERAGMLIRQAPREFGVYSGDDASAIALMLLGGHGNVSVTANVAPRAMQE
                     LCAAAVEGKAREAAAIHLKLLPLHRALFVEPSPAPTKWALSRLGRCGAGVRLPITPLS
                     ADAQAVVERAMREAGLL"
BASE COUNT          577 a         1320 c         1275 g          613 t
ORIGIN      
        1 tgcgacagcc ctgcaggatc acgaagccgg ccgacggata gccggcaccg gcttcgacga
       61 tgaagtggcg gaagtcggga aaccggatcg cgccctcgtg ctgggtccga tcccagggcg
      121 tgatgaaggg tcggttcgcc gggtcctgct cgaccgagat cacgaaatcg aggtcggaga
      181 gcatcgtcgg gcgcagccga agcgccgaag cacgcgtcat ggccgtgggc gagcgggctt
      241 acacatcgac ttcgacctcg tcgccatgaa gctccatcag gtcacgacgc gcctgcgcct
      301 cgcccttgcc catcagcctg gagagcgagt cgaccgtcgc ggcgaagccg agggcgccga
      361 actcgacctg aaggaggcgc cgcgtttccg ggttgagcgt cgtgtcccag agctgctcgg
      421 cgttcatttc gccgaggccc ttgaagcggc tgatgctcca ggcgttggcg cgcgcgccct
      481 ccttcttcag cttgtcgagc gtcgcgtgaa gctcgccctc gtcgagcgcg tagatcttcg
      541 tcgccggctt cttgccgcgc gccggcgcat cgatgcgaaa gagcggcggc ttggcgatgt
      601 agaggtggcc gctcgcgatc agcttcggga agtggcggaa gaaaagcgtc agcagcagca
      661 cctggatgtg cgagccgtcc acatcggcat cgctgaggat gcagaccttg ccgtagcgca
      721 ggccgccgag gtcgggatcg tcgttcggtc cgtgcggatc gacgccgatc gcgaccgcga
      781 tgtcgtgaat ctcgttgttg gcgaagagac gatcgcgttc gacctcccat gcgttgagca
      841 ccttgccgcg cagcggcagg atcgcctgcg tctccttgtc gcggcccatc ttggcgctgc
      901 cgccggccga atcgccctcg accaggaaga gctcgttcag ggccaggtcg cggctttcgc
      961 aatcggtcag cttgcccggc agcaccgcga cgccggaacc cctcctcttc tcgaccttca
     1021 gcgacgcgcg ctggcgtgtc tgggcctggc ggatcacgag gtcggcgagc ttcctgccga
     1081 agtcgacgtg ctggctcagc cacagttcga gcgcaggctt gacgcaggtc gagaccagcc
     1141 gcaaggcgtc gcgactgttc aggcgctcct tgatctggcc ctggaactgc gggtcgagga
     1201 ccttcgcgga cagcacgaag ctcgcgcgcg agaacacgtc ttcgggcatc agctttacgc
     1261 ccttgggcag caacgcgtgc atgtcgatga agcccttcac ggcgccgaag aggccgtcct
     1321 tcaggcccga ctcgtgcgtg ccgccggcca ccgtcggaat caggttcgcg tagctctcgc
     1381 gcaccggcgc gccctcgtcg gtgaaggcca cgctccacgc cgcgccttcg ccctcggcga
     1441 agttctcggt ctcgccggca tcggcatagt gttcgccttc aaacaacgga attaccgggt
     1501 cggccggcaa ggaccgcatc aagtagtcgc tcaagccacc ctggtagagc cacgcctggc
     1561 gctcgggctc cgcccgcccg gacttctcga tcaccagcgc caccgtgacg cccggcatca
     1621 gcaccgcctt gctgcgcagc aggtgcatca gttcggcgcg cggcagttcg gcactctcga
     1681 aatacttcgg gtcgggccag acccgcgccg tcgtgccgct cctgcgttcg ccggccgcgg
     1741 ccttgcgcac ggccagcgct tcgaccacgt cgccgccggc gaacgcgatc tgcgcgacct
     1801 ggccggcgcg ccacacggtc acctcgaggc gcttcgcgag cgcgttcgtg acactgacac
     1861 cgacgccgtg cagaccgccc gagaagctgt acgcaccggt cccgcccttg tcgaacttgc
     1921 cgccggcatg cagccgcgta aagacgatct cgaccacgct gacgcgctct tccggatgca
     1981 gcccgaacgg aatgccgcgg ccatcgtcgg tgacgctgac cgagccgtcg gcgtgcagcg
     2041 tcacctcgat ggccttgccg tggccggcga gcgcctcgtc ggcggcgttg tcgatgacct
     2101 cctgaacgat gtgcaacggc gtctcggtgc gcgtgtacat gccgggccgc tgcttcaccg
     2161 gctcgagccc cttgagcaca cggatcgacg cttccccgta cgacgcggag ggtttggtgg
     2221 ccatgggcgg gcattctagg tggcgcgttt tgcggccatg cgcgacgcgt tcgggcgcgc
     2281 cgcggttgct acagtccgac atgcgcgcaa cgaccggagc ctccgcgatc tcgccctggg
     2341 tccggcgctg gtcgcatctc gtcgctccgg gcgcgacggt gctcgacgtc gcttgcggtc
     2401 cgggccggca cgtgcgctgg ttcgccgaac ggggctgtcg cgtcaccggc atcgaccgcg
     2461 acgccgcggc gctggagcca ctgcgatcga tcgccgacct gcgcgtcgcc gacatcgaga
     2521 acggcccctg gcctctgccc gatgcatgct tcgacgcggt gatctgcacc aactacctgt
     2581 ggcgcgccct cctgcccacc ctcgtggcct cggtcgccga gggcggcgtg ctgatctacg
     2641 agaccttcag tgccgggaac gaaaccgtcg gcaagccttc caaccccgac ttcctgctgc
     2701 gcccggggga gttgctggag gccgcgggga gcctgcgggt cgtggccttc gaagacggct
     2761 ttgtcggcgc gcccgaccgc ttcgtgcagc gattggtggc ggcccgacaa gacaccgcgc
     2821 gaagcccacc gcgccgctgg gcgctgcagg gcgaatgagg aacggcgccg gctaaaatcc
     2881 gcgaattcag aggaatgccc atgaaaccca tcgttggcag catcgtcgcg ctggtcaccc
     2941 cgatgcacga agacggcacg gtcgactacg ctgtgttgcg cagcctgatc gactggcaga
     3001 tcgccgaagg cacgcaatgc atcggcgtgg tcggaacgac cggagaatcg ccgaccgtgt
     3061 cggtcgagga gcactgcgag atcatccgcg tcgcggtgga gcatgtgcgc ggccgcgtgc
     3121 cggtgatggc cggtaccggg ggcaattcga ccgccgaggc gatcgagctc tcgcgcttcg
     3181 cggccaaggt cggggccgat tgcacgctgt cggtggtgcc ctactacaac aagccgtcgc
     3241 aggaaggcat ctaccgtcat ttccgggcca tcgccgaagc ggccgacatc ccgatgctgc
     3301 tctacaacgt gcctggccgc acggtcgcgg acatgcagac cgagaccgcg ctgcgcctcg
     3361 cgcaggtgcc gggaatcgtc ggcatcaagg aagccacggg cgacatcgag cgcgccggca
     3421 tgctgatccg gcaggcgcca cgcgaattcg gcgtctactc gggcgacgat gccagcgcga
     3481 tcgccttgat gctgctcggc ggccacggca acgtcagcgt gaccgccaac gtcgccccgc
     3541 gcgccatgca agagctctgc gccgctgccg tcgagggcaa ggcccgcgag gccgccgcga
     3601 tccacctgaa gctgctgccg ctgcaccggg cgctgttcgt cgaaccgagt ccggcgccga
     3661 ccaagtgggc cctgtcccgg ctcggccgct gtggcgccgg tgtgcgcctg cccatcacgc
     3721 cgctgagcgc cgacgcgcag gccgtcgtcg agcgcgccat gcgtgaagca gggctgcttt
     3781 gaccc
//
LOCUS       DASVHM010000516         5659 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_977359, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000516 DASVHM010000000
VERSION     DASVHM010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5659
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_977359"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..148)
                     /locus_tag="VF308_09715"
     CDS             complement(<1..148)
                     /locus_tag="VF308_09715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011519103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase"
                     /protein_id="HEX7436975.1"
                     /translation="MSVLGSLSQLLEIVVALLLAPLLVGWINQWRAWLQNKSAPGLLQ
                     PYRLL"
     gene            complement(145..2169)
                     /gene="hyfB"
                     /locus_tag="VF308_09720"
     CDS             complement(145..2169)
                     /gene="hyfB"
                     /locus_tag="VF308_09720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit B"
                     /protein_id="HEX7436976.1"
                     /translation="MNGLSDPARWIHLDWVLVVVAGWLLVGLLGLFALRNLGWVAKAL
                     FPAGGAIAVLLAGVALAAMFAAPQVVVLPLGLPGLPFHLRLDPLAGFFLMVIGAASAG
                     VSAFAAGYFRKGEGTPPGLLCLEYHVFLASMALVVLADDAYAFMVMWETMALSSFFLV
                     IANHRIAEIRQAGYLYLLVAHVGAIGILLCFGVLQANTGDYTFANMRAQHLTPFWGSV
                     AFLLALFGFGAKAGIVPLHVWLPEAHPAAPSPVSALMSGVMLKTAVYGLLRVTFDLLP
                     AQIWWWGVLMLALGLASALIGVVFAAVQVDMKRLLAYSSIENIGLVFAAMGLAVLFSA
                     YAMKPMAALALTAALYHVASHAFFKSLLFVGTGAVLHATGQRSLGKLGGLMRYMPWVA
                     WLTLVGTLASAGLPPLGGFVSEWLLLQSFLFTPGLPSSFLNMLIPVVAALIALVAALS
                     GYTMVKFFGVIFLGQPRENNLSQAHRAGPLERAGMVWLALGCVALGLLPVQFIQLIDA
                     VTRQLVAAGIGSTVASSGWLLVPVDVERASYGPVVFLLGLAASFALAFALVRRLYHGR
                     LRRAAPWDCGYPWQTARMQDTAEGFGQPIRQIFEPFFRMQRELPSPFDREPRYRVVVG
                     DHFWHWLYLPVADLVERLSRWIGRLQQGRIAVYLLYSFLTLVGVLILVKR"
     gene            complement(2177..2434)
                     /locus_tag="VF308_09725"
     CDS             complement(2177..2434)
                     /locus_tag="VF308_09725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HEX7436977.1"
                     /translation="MELKTARLTLLIDPAKKEAFERLCSAQDLTPSQVVRQLIRDYLT
                     QHDVSYVPSGTRAIHGPDPTPARPRKLGLPSKAAQSGKSRR"
     gene            complement(2547..3440)
                     /locus_tag="VF308_09730"
     CDS             complement(2547..3440)
                     /locus_tag="VF308_09730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018913580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kdo hydroxylase family protein"
                     /protein_id="HEX7436978.1"
                     /translation="MASDAAEPVDIVRTYDDRSWGDDGPTRGVEDVVEAGQVLVFPRL
                     AFALDESERRFLDPSWADAKAKNVSVRWPSGELRGAVGAAADLAALRAMIVRFAEHSE
                     ALALRLFPHYRGHLRRGNTSFRPTDVAGRIRSWRQDDTRLHVDAFPSNPMQGTRLLRV
                     FSNVNPNGEPRRWRVGEPFEAHARRYLGAIRRPLAGSAWLMHRAGITKRRRTEYDHVM
                     LQLHDRAKADLDFQRGGPQARVDFAPGTTWVVYSDQVLHAAMGGQHMLEQTFLLDVES
                     LRRPETSPLRTLERLLHRSLR"
     gene            complement(3454..5535)
                     /gene="metG"
                     /locus_tag="VF308_09735"
     CDS             complement(3454..5535)
                     /gene="metG"
                     /locus_tag="VF308_09735"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015064494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEX7436979.1"
                     /translation="MPRKLFVTTALPYANAPFHIGHMMEYIQADIWVRFQRMRGHEVH
                     FVCADDAHGAPIMIAAEKAGKAPQAFVAEIAAGRKPYLDGFHISFDNWHSTDGPENHA
                     LAKDIYLHLRKEGLIAVKSVEQFFDPVKAMFLPDRYIKGECPVCGTPDRYGDSCDVCG
                     SVYAATALKNPHSVLSGATPILKSSEHYFFQLSSQRCLDFLKRWTNEPGRLQPEVLNK
                     ISEWFKVDEHGHGGLADWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKNYFD
                     KGGAKAKGESRSFDEFMADPAVEQIHFIGKDITYFHTLFWPAMLKFSGRKVPDRVYVH
                     GFITVSGEKMSKSRGTGISPLRYLDIGMNAEWLRYYIAAKLNAHVEDIEFNPDDFVAR
                     VNADLVGKYVNIASRAANFINKRFAGELRVAGDAGALAAEARADIAAIADCYEGRESG
                     KALREIMAMADRINTDFDAAQPWLLAKDAARGAELQNVCSRALIGFQRLSVLLAPVLP
                     ALARRVARELFGLERDFVWSDAEAAPMRIAPYRHLMQRVDPKQLDALFEAPPEAAAAA
                     TPIALPPPGGEAIAATITIDDFAKLDLRIALIVACEKVEGSTKLLKLTLDVGEARTRT
                     VFSGIQSAYAPEQLVGKLTVMVANLAPRKMKFGVSEGMVLAASHADDKQHPGLFVLEP
                     HAGAVPGLRVR"
BASE COUNT          950 a         1865 c         2033 g          811 t
ORIGIN      
        1 gcagcaggcg atagggctgc agcagcccgg gcgccgactt gttctgcagc caggcgcgcc
       61 actggttgat ccagcccacc aggagcggcg cgagcaggag cgcgacgacg atctccagca
      121 gttgcgagag gctgccgaga acgctcatcg cttcaccagg atgagcaccc cgacgagagt
      181 caggaagctg tagagcaggt agaccgcgat ccgcccctgc tgcagccgcc cgatccagcg
      241 cgacaggcgt tcgacgagat cggccaccgg caggtagagc caatgccaga aatggtcgcc
      301 gacgacgacg cgatagcgcg gctcgcgatc gaacggcgag ggcaattcgc gctgcatgcg
      361 gaagaagggc tcgaagatct gccggatcgg ctggccgaag ccttcggccg tgtcctgcat
      421 gcgcgcggtc tgccagggat agccgcagtc ccacggcgct gcccgccgca gccgcccgtg
      481 gtagagcctt cgcacgagcg cgaaggcgag cgcgaagctc gccgccagcc cgagcaggaa
      541 gaccaccgga ccgtagctcg cacgctcgac gtcgacgggc accagcagcc agccgctgga
      601 ggccacggtg ctgccgatgc ccgcggcgac gagctggcga gtcaccgcat cgatcagctg
      661 gatgaactgg accgggagca ggccgagggc gacgcaaccg agcgccagcc agaccatgcc
      721 ggcgcgctcc aaggggcccg cgcggtgcgc ctgcgaaagg ttgttctcgc gcggctggcc
      781 gaggaagatg acgccgaaga acttcaccat cgtgtagccc gacagcgccg cgaccagcgc
      841 gatcagcgcg gcgacgaccg ggatcagcat gttgaggaac gagctcggca gccccggcgt
      901 gaagagaaag ctctgcagca gcagccattc ggagacgaag cctccgagag gcggcaggcc
      961 cgcgctcgcc agcgtcccga ccagggtcag ccaggcgacc cagggcatgt agcgcatcag
     1021 gccgccgagc ttgccgaggc tgcgctggcc ggtggcgtgc agcacggcgc cggtgccgac
     1081 gaacagcagg ctcttgaaga acgcatggct ggcgacgtga tacagcgccg cggtcagcgc
     1141 cagcgccgcc atcggcttca tcgcgtaggc ggagaagagc accgcgaggc ccatcgcagc
     1201 gaacaccagg ccgatgttct cgatcgacga ataggccagc agccgcttca tgtcgacctg
     1261 gaccgccgcg aagacgacgc cgatcagggc gctggccagg ccgagcgcga gcatgagcac
     1321 gccccaccac cagatctgcg ccggcagcag gtcgaaggtc acgcgcagca gcccgtagac
     1381 ggcggtcttc agcatcacgc cgctcatcag cgccgaaacc ggcgacggtg cggcggggtg
     1441 cgcctccgga agccatacgt gcagcggcac gatccccgcc ttcgcgccga agccgaacag
     1501 ggcgagcagg aacgcgaccg agccccagaa cggggtgagg tgctgggcgc gcatgttggc
     1561 gaaggtgtag tcgccggtgt tggcctgcag cacgccgaag cagagcagga tgccgatcgc
     1621 gccgacgtgg gcgaccagca ggtacaggta tccggcctgc cggatctcgg cgatccggtg
     1681 gttggcgatg acgaggaaga acgacgacag cgccatcgtc tcccacatca ccatgaaggc
     1741 ataggcgtcg tcggccagca ccaccagcgc catgctggcg agaaagacgt ggtattcgag
     1801 gcagaggagg cccggcggcg tgccctcgcc cttcctgaaa tagccggccg cgaatgccga
     1861 cacgccggcc gacgcggcgc cgatcaccat caggaagaag ccggcgagcg ggtcgaggcg
     1921 aaggtggaag ggaagcccgg gcaggcccaa gggcagcacg acgacctggg gcgcggcgaa
     1981 catcgcggcg agcgcgacgc cggcgagcag cactgcgatc gcgccgccgg ccggaaagag
     2041 cgccttggcg acccagccga ggttgcgcag cgcgaacagg cccagcaggc ccaccagcag
     2101 ccagccggca acgacgacga gcacccagtc cagatggatc cagcgcgccg ggtcggagag
     2161 gccgttcatg ccagcgtcat cggcgggact tgcctgattg cgccgccttc gaaggcagcc
     2221 cgagcttccg cggccgcgcc ggagtcgggt ccggtccatg gattgcacgc gtgccgctcg
     2281 ggacgtagct gacgtcgtgc tgcgtcaggt agtcacggat gagctggcgc acgacctgcg
     2341 agggggtcag gtcctgggcg gaacagaggc gctcgaacgc ctccttcttg gccgggtcga
     2401 tcagcagcgt caggcgcgcc gtcttcagtt ccatggtggc gcgatatgtt aatgaaatgt
     2461 gcgctcagag catatctcac gcgcatggga tgtgcctgcg ccagcggccc tttccttgcg
     2521 ccacgacaaa ggaccggcgc gcgccgctag cgcagcgacc ggtgcagcag ccgctcgagc
     2581 gttcgcagcg gcgacgtctc cggccggcgc aggctctcga cgtcgagaag gaaggtctgc
     2641 tccagcatgt gctgcccgcc catcgccgcg tgcaggacct ggtcgctgta gacgacccag
     2701 gtcgttcccg gcgcgaagtc gacccgcgcc tgcgggccgc cgcgctggaa gtcgaggtcg
     2761 gccttggcgc ggtcgtggag ctggagcatg acgtggtcgt actcggtgcg gcgccgcttc
     2821 gtgatgccgg ccctgtgcat cagccaggcg cttccggcca gcggccggcg gatcgcgccg
     2881 aggtagcgcc tggcgtgcgc ttcgaacggc tcgccgacgc gccagcggcg cggctcgccg
     2941 ttcgggttga cgttggagaa gacgcgcagg aggcgcgtgc cctgcatcgg attcgaggga
     3001 aaggcgtcga cgtgcaggcg cgtgtcgtcc tggcgccagc tgcgaatgcg gccggcgacg
     3061 tcggtcggtc ggaacgaggt gttgccgcgg cgcaggtggc cgcggtagtg cgggaagagg
     3121 cgcagcgcga gcgcctcgct gtgctcggcg aagcggacga tcatcgcgcg cagcgccgcc
     3181 aggtcggccg cggcgccaac ggcgccacgc agctcgcccg acggccagcg caccgagacg
     3241 ttcttcgcct tggcgtcggc ccaactggga tcgaggaagc gccgctccga ctcgtcgagc
     3301 gcgaaggcga ggcgcgggaa gacgagcacc tggccggcct cgacgacgtc ctcgacgccg
     3361 cgcgtcggac cgtcgtcacc ccacgatcgg tcgtcgtagg tgcgaacgat gtcgaccggt
     3421 tcggcggcgt cgctcgccat cggcgcctcg ccttcagcgc acccgcaggc ccggcacggc
     3481 gccggcgtgc ggctcgagga cgaacagccc gggatgctgc ttgtcgtcgg cgtgcgaggc
     3541 ggccagcacc atgccttcgc tgacgccgaa cttcatcttg cgcggcgcca ggttggcgac
     3601 catcacggtc agcttgccga ccagctgctc gggcgcatag gccgactgga tgccgctgaa
     3661 gacggtccgc gttcgcgcct cgccgacatc gagcgtcagc ttcagcagct tggtcgagcc
     3721 ctcgaccttt tcgcaggcga cgatgagggc gatgcgcagg tcgagcttgg cgaaatcgtc
     3781 gatcgtgatc gtcgcggcga tcgcctcgcc gccgggcggc ggtagggcga tcggcgtcgc
     3841 cgccgccgca gcctcgggcg gtgcctcgaa cagcgcatcg agctgcttcg ggtcgactcg
     3901 ctgcatcagg tggcggtacg gcgcgatccg catcggcgcg gcctcggcgt cgctccagac
     3961 gaagtcgcgc tcgaggccga acagctcgcg agcgacacgc cgcgccagcg ccggcagcac
     4021 cggcgcgagc aggaccgaga ggcgctggaa gccgatcagc gcgcgcgagc agacgttctg
     4081 cagctcggcg ccgcgcgccg cgtccttggc gagcagccac ggctgggcgg cgtcgaaatc
     4141 ggtgttgatg cggtcggcca tcgccatgat ctcgcgcagc gccttgccgg actcgcgccc
     4201 ctcgtagcag tcggcgatgg cggcgatgtc ggcgcgcgcc tcggcggcga gcgcgccggc
     4261 gtcgccggcg acccgcagct cgccggcgaa gcgcttgttg atgaaattcg cggcccggct
     4321 ggcgatgttg acgtacttgc cgaccaggtc ggcgttgacg cgggcaacga agtcgtcggg
     4381 gttgaactcg atgtcctcga cgtgcgcgtt gagcttggcg gcgatgtagt agcgcagcca
     4441 ctcggcgttc atgccgatgt cgaggtagcg cagcggcgag atgccggtgc cgcggctctt
     4501 gctcatcttc tcgccgctga cggtgatgaa tccgtgcacg tagacgcggt cgggaacctt
     4561 gcggccgctg aacttcagca tcgccggcca gaacagggtg tggaagtagg tgatgtcctt
     4621 gccgatgaaa tgaatctgct cgaccgccgg gtcggccatg aactcgtcga acgagcgcga
     4681 ttcgcccttc gccttcgcgc cgcccttgtc gaagtagttc ttgagcgaag cgaggtagcc
     4741 gaccggcgcg tcgagccaga cgtagaagta cttgcccggc gcgtccggga tctcgatgcc
     4801 gaagtagggc gcgtcgcggc tgatatccca gtcggcgagg ccgccgtggc cgtgctcgtc
     4861 gaccttgaac cattcgctga tcttgttcag cacctcgggc tgcaggcgcc cgggctcgtt
     4921 tgtccagcgc ttgagaaagt cgaggcagcg ctgcgacgag agttgaaaga agtagtgctc
     4981 gctcgacttc aggatcggcg tcgcccccga cagcaccgaa tgggggttct tcagcgccgt
     5041 cgcggcgtag accgagccgc agacgtcgca actgtcgccg tagcgatcgg gagtgccgca
     5101 caccgggcat tcgcccttga tgtagcggtc cggcaggaac atcgccttga ccggatcgaa
     5161 gaactgctcg acgctcttca ccgcgatcag gccttccttc ctcaggtgga ggtagatgtc
     5221 cttcgcgagg gcatggttct cggggccatc ggtcgagtgc cagttgtcga acgagatgtg
     5281 gaagccgtcg aggtagggct tcctgccggc ggcgatctcg gcgacgaagg cctgcggggc
     5341 cttcccggcc ttctcggcgg cgatcatgat cggcgcgccg tgcgcgtcgt cggcgcagac
     5401 gaagtgcacc tcgtggccgc gcatgcgctg gaagcgcacc cagatgtcgg cctggatgta
     5461 ctccatcatg tggccgatgt ggaagggcgc gttcgcgtaa ggcaacgccg tcgtcacgaa
     5521 gagcttgcgg ggcatggggc aaccggtagg gaaccggtga ttttagggac gctctgccag
     5581 aatccttcgc tgagtctgtg cgcggtgtcg gcgcgccctc gcgcggtcgc ctcgttgcgc
     5641 gacccgggac aacctagga
//
LOCUS       DASVHM010000517         1522 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_542314, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000517 DASVHM010000000
VERSION     DASVHM010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_542314"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(20..649)
                     /locus_tag="VF308_09740"
     CDS             complement(20..649)
                     /locus_tag="VF308_09740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009143 - nucleoside triphosphate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP pyrophosphatase"
                     /protein_id="HEX7436980.1"
                     /translation="MQLVLASNNAKKLAELGALFAPLGLALVAQGALGVAEAEEPHAT
                     FLENALAKARHAAALAGGAAIADDSGLCVDALGGAPGVVSAHFAAIELPAGDREARRH
                     VQDAANNRLLLERLANVHERGARFVCTLVAVRAAADPEPLVAVGRWPGEILEAPRGTG
                     GFGYDPLMFIPALGCTVAALSAEAKAVHSHRANAARALLGLMREVWGLG"
     gene            complement(664..1389)
                     /gene="rph"
                     /locus_tag="VF308_09745"
     CDS             complement(664..1389)
                     /gene="rph"
                     /locus_tag="VF308_09745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HEX7436981.1"
                     /translation="MTLQRSQARAADALRPLTITRRYTRYAEGSVLIEFGHTKVLCTA
                     SVEEKVPPHKRGSGEGWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLR
                     CVFDLKALGERTIALDCDVIQADGGTRTAAITGAFVAAYDAVSWLITEGKIVASPIRQ
                     FVAAISVGIVGGELLLDLDYSEDSACDTDMNVVMTEAGGFVELQATAEGAAFSQAEMD
                     GLLVLAGKGIRELVAAQRRALGA"
BASE COUNT          234 a          542 c          532 g          214 t
ORIGIN      
        1 cgccgccgcg atccggatct cagccaaggc cccagacctc gcgcatcagg ccgagcagcg
       61 cgcgcgcggc gttcgcacgg tggctgtgca cggccttggc ctcggcactc aacgcggcga
      121 cggtgcagcc caaggccggg atgaacatca gcgggtcgta gccgaagcct ccggtgccgc
      181 gcggcgcctc gaggatctcg ccgggccaac ggccgaccgc gacgagcggc tccgggtcgg
      241 cggccgcgcg caccgcgacc agcgtgcaga cgaagcgcgc gccacgctcg tgcacgttgg
      301 ccaggcgctc cagcagcagg cggttgttgg cggcgtcctg cacatgtcgc cgcgcttcac
      361 gatcaccggc gggcagttcg attgcggcga aatgggcaga gaccaccccc ggcgcgccgc
      421 cgagcgcgtc gacgcaaaga cccgagtcat cggcgatggc ggcaccgcct gcgagcgccg
      481 cggcgtgacg tgccttggca agcgcgttct cgagaaacgt ggcgtgcggc tcttcggcct
      541 ccgcgacgcc gagcgcgccc tgcgccacga gcgccagccc gagcggcgcg aacagcgcgc
      601 cgagctcggc gagcttcttc gcgttgttcg acgcgaggac cagttgcaca gccaagccct
      661 agtctaggcg ccgagcgcgc gccgctgcgc ggcaaccagc tcacggatac ccttgccggc
      721 cagaaccagg aggccgtcca tctcggcctg cgaaaacgcc gcgccttcgg cggtggcctg
      781 gagctcgacg aaaccgcccg cctctgtcat gacgacgttc atgtcggtgt cgcaggccga
      841 atcctcgctg tagtcgagat cgaggaggag ctcgccgccg acgatgccga ccgaaatcgc
      901 ggcgacgaac tgtcgaatcg gcgaggcgac gatcttacct tcggtgatca accacgagac
      961 cgcgtcgtag gccgcgacga aggcccccgt gatggccgcg gtgcgggtgc cgccgtcggc
     1021 ctggatcacg tcgcaatcaa gcgcgatcgt gcgctcgccg agcgccttga gatcgaagac
     1081 gcaacgcagc gagcgcccga tcaggcgctg gatttcctgc gtgcgcccgc tctgcttgcc
     1141 acgcgcggcc tcgcggtcgc cgcgcgtgtg ggtggcccgc ggcagcatgc cgtattcggc
     1201 cgtcacccag ccctcgccgc tgccgcgctt gtgggggggc actttctctt cgaccgacgc
     1261 ggtgcagagc accttggtgt ggccgaactc gatcagcacc gagccttcgg catagcgcgt
     1321 gtagcgacgc gtgatcgtga gggggcgcaa agcgtcggcc gcgcgtgcct gggagcgttg
     1381 aagtgtcatg gcgctattgt ctggcacccg caagcgccgc cgacgcgccg cgcttcaggc
     1441 ggccttcgcg ccgtggccgg ccggacccag gtggcgagtg ccccattcgc ggatcgccga
     1501 aatcacggga acgaaacttc ga
//
LOCUS       DASVHM010000518         3285 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_542318, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000518 DASVHM010000000
VERSION     DASVHM010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3285
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_542318"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..851)
                     /locus_tag="VF308_09750"
     CDS             complement(<1..851)
                     /locus_tag="VF308_09750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007589910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX7436982.1"
                     /translation="MDRVALMEASLIDVHTHVVPESFPAYLGRHRNAAWPSMAPAHAC
                     HRHVMVSGAVYRTVSHQCWDCSGRRADMDARRVARQVLSPMPELLSYWLDAEDGATMC
                     RYLNEVIAAMVAEAPARFVGLGCVPLQDVSAAIRELDVAVHRFGLAGVEIGSNVNGVA
                     IGDPCFLPFFEAAADCGAAVFVHALRPVGMDRLVGPAALEQVLAFPGEIGLAAASMIT
                     GGTLDRVPGLRIAFSHGGGSLSMLLPRLRHAWRTLPPVRGALAADPADAARRMYVDDL
                     VYDAPTI"
     gene            complement(866..1747)
                     /locus_tag="VF308_09755"
     CDS             complement(866..1747)
                     /locus_tag="VF308_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7436983.1"
                     /translation="MSLWLDLLGTEIRYVATPTFGNIRIAEAGPGHRDTILFQHGLNG
                     HLEAYAKNLIALADRFHVIAFDYVGHGLSDKRIDDYTPAVFAEQLRELMDALRIDAAH
                     LSGESLGGWVSGLFAAKYPQRVRRLMLNTAGGIPVVSEKGKQDLQNFMALNKRNVDAV
                     PNRESVTARMQWLMHPNNHHLLVEELVDLRLRIYLDPATRRVAPKINAVIQRHDEFLI
                     PLDALRCETLFLWTRDNPIHDLEAAHAAAARVPGSLFYLMQSDAAHWPQYEAPEEFNA
                     VTASFFATGRLPGQKVS"
     gene            complement(1744..2394)
                     /locus_tag="VF308_09760"
     CDS             complement(1744..2394)
                     /locus_tag="VF308_09760"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX7436984.1"
                     /translation="MATATATATVAKVRRTQAERTESTRRRILDAAVDVLATKGYAGF
                     RTAEVAEIAGVSRGAQTHHFPSKDELVVAVVEHVFRRAADLGRKRAHRVKSVDEAIQA
                     LIVDSQEFFFSELFLIALDLAIQRRMSPGDANPVTQISAASRLPVEAVWLAALVETGV
                     PANVAEDLLWLTLSIVRGLAVRRLWQHDAPRFKRLFKLWRNMVAGYLETLEKGKKS"
     gene            complement(2394..3161)
                     /locus_tag="VF308_09765"
     CDS             complement(2394..3161)
                     /locus_tag="VF308_09765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7436985.1"
                     /translation="MTGTARFQGQAVVITGAARGIGLAIAHAFAREGAVVALADVTPD
                     ELQAAVQQVREAHGGQAIGVAGDLSTEAGAQALRAATELAFGDAAVLVNNAGGGVIRP
                     FLKHTPETLRATIDRNLWTTLWCTRAFLPGMLRKRYGRIVNLGADSVRNGLVDHAAYN
                     AAKGGVHGLTTGLAREFAKEGITVNTVAPCAVNGEPLRKFFEEQPEIAQRFLGVIPMG
                     RAAELDEVASMVTYLASREAAFVTGQVVSVNGGSTML"
BASE COUNT          506 a         1139 c         1155 g          485 t
ORIGIN      
        1 tggatggtgg gcgcgtcgta gaccaggtcg tccacataca tgcgccgcgc cgcgtcggcc
       61 gggtctgcgg cgagcgcgcc gcgcaccggc ggcagggtgc gccacgcgtg gcgcaggcgc
      121 ggcagcagca tgctcaacga gccgccgccg tggctgaagg cgatgcgcag gccgggcacg
      181 cggtcgagcg tgccgccggt gatcatcgac gccgcggcca ggccgatctc gccgggaaac
      241 gccagcacct gttcgagcgc cgcgggtccg accaggcgat ccatgccgac gggccgcagc
      301 gcgtgcacga acaccgcggc gccgcagtcg gccgccgctt cgaagaaggg caggaagcac
      361 gggtcgccga tggcgacgcc gttgacgttg ctgccgatct cgacgccggc cagaccgaag
      421 cgatgcacgg ccacgtcgag ctcgcggatc gccgcggaaa catcctgcag cggcacgcag
      481 ccgagcccca cgaagcgcgc cggcgcctcc gcgaccatcg ccgcgatcac ctcgttcagg
      541 tagcggcaca tcgtggcgcc gtcttccgca tcgagccagt acgagagcag ctccggcatc
      601 ggcgagagca cttggcgggc gacccggcgc gcgtccatgt cggcgcggcg cccgctgcaa
      661 tcccagcact ggtgcgagac cgtgcggtag accgcgccgg acaccatcac gtgccgatgg
      721 caggcgtgcg ccggagccat cgacggccac gctgcgttcc tgtggcggcc gaggtaggcg
      781 ggaaaggact cgggcaccac gtgggtgtgg acgtcgatca gcgacgcctc catcaaggcc
      841 acccgatcca catgttcatt cgcactcagg acaccttctg ccctggcagc cggccggtcg
      901 cgaagaagct cgcggtcacc gcattgaact cttccggcgc ctcgtactgc ggccagtgcg
      961 ccgcatccga ctgcatcagg tagaagaggc tgcccggcac gcgcgcggcg gcggcatgcg
     1021 ccgcctccag gtcgtggatc gggttgtcgc gcgtccacag gaagagcgtc tcgcagcgca
     1081 gcgcatcgag cgggatcagg aactcgtcgt ggcgctggat caccgcattg atcttcggcg
     1141 cgacgcggcg cgtggccgga tcgaggtaga tgcgcaggcg caggtcgacg agctcctcga
     1201 cgagcaggtg gtggttgttg gggtgcatca gccactgcat gcgcgccgtc accgactcgc
     1261 ggttcggcac cgcgtcgacg ttgcgcttgt tcagggccat gaagttctgc aggtcctgct
     1321 tgcccttttc cgagacgacc gggatgccgc ccgccgtgtt cagcatcagt cggcgcacgc
     1381 gctgcgggta cttcgccgcg aaaaggcccg agacccagcc gccgagcgac tcgcccgaaa
     1441 ggtgcgccgc gtcgatgcgc aacgcgtcca tcagctcgcg cagctgctcg gcgaaaacgg
     1501 cgggcgtgta gtcatcgatc ctcttgtcgg agaggccgtg gccgacgtag tcgaacgcga
     1561 tcacgtggaa ccggtccgcg agcgcgatca ggttcttcgc ataggcttcc aggtggccgt
     1621 tgagcccgtg ctggaacagg atggtgtcgc ggtggccggg ccccgcctcg gcgattcgga
     1681 tgttgccgaa ggtcggcgtg gcgacgtagc ggatctcggt gccgagcagg tcaagccaga
     1741 ggctcatgat ttctttcctt tctcgagtgt ctcgaggtag ccggcgacca tgttgcgcca
     1801 gagcttgaac aggcgcttga agcgcggcgc gtcgtgctgc cacaggcgcc gcaccgcgag
     1861 cccgcgcacg atgctgaggg taagccagag caggtcttcg gccacgttcg ccggaacgcc
     1921 ggtctcgacc agcgcggcga gccagaccgc ttccaccggg aggcgcgacg cggccgagat
     1981 ctgcgtcacc gggttggcat cgccaggact catgcggcgc tggatcgcga ggtcgagcgc
     2041 gatcaggaac agctcgctga agaagaactc ctggctgtcg acgatcagcg cctggatcgc
     2101 ctcgtcgacc gacttgacgc gatgggcgcg cttcctgccg aggtcggcgg cgcgtcggaa
     2161 cacgtgctcg acgacggcga ccacgagctc gtccttcgac ggaaagtgat gcgtctgcgc
     2221 accgcgcgac acgccggcga tctcggcgac ctcggcggtg cgaaagcccg catagccctt
     2281 ggtcgcgagc acgtccaccg cggcgtcgag gatgcggcgc cgggtcgact cggtgcgctc
     2341 ggcctgcgtg cgccgcacct tcgcgacggt cgccgtcgcc gtcgcagtcg ccatcacagc
     2401 atcgtgcttc cgccgttgac gctcacgacc tggccggtca cgaaggcggc ctcgcgcgag
     2461 gcgaggtagg tcaccatcga ggcgacctcg tcgagctcgg ccgcgcgccc catcgggatc
     2521 acgccgagaa agcgctgcgc gatctcgggc tgctcttcga agaacttgcg cagcggctcg
     2581 ccgttgacgg cgcacggcgc gacggtgttc accgtgatgc cttccttcgc gaactcgcgc
     2641 gcgaggcccg tcgtgaggcc gtggacaccg cccttggcgg cgttgtaggc agcgtggtcg
     2701 acgaggccgt tgcgcaccga gtcggcgccg aggttgacga tgcggccgta gcgcttgcgc
     2761 agcatccccg gcaaaaaggc gcgcgtgcac cacagcgtgg tccagagatt gcggtcgatc
     2821 gtcgcgcgca aggtctccgg cgtgtgcttc aggaacggcc ggatcacgcc gccgccggcg
     2881 ttgttgacga gaacggccgc gtctccgaag gcgagttccg tcgcggcgcg cagggcctgc
     2941 gcgccggcct cggtcgacag gtcgcccgcc acgccgatcg cctgcccgcc gtgcgcctcg
     3001 cgcacctgct gcaccgccgc ctgcaactcg tcgggcgtga catcggccag cgccaccacg
     3061 gcaccctcgc gcgcgaaggc atgggcgatc gcgaggccga tgccgcgcgc ggcgccggtg
     3121 atcacgaccg cctggccctg gaagcgtgcc gtaccggtca cagcagaatg ctcacgcggc
     3181 cctgcggccg cagcgcgtcc atgtcgagca tcgagcgctt ctcgcggatc ttcagcgcgc
     3241 cggccaccat actcagccga tagcggtagc tgccgacgta cacat
//
LOCUS       DASVHM010000519         1965 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1191573, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000519 DASVHM010000000
VERSION     DASVHM010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1965
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1191573"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..120)
                     /locus_tag="VF308_09770"
     CDS             complement(<1..120)
                     /locus_tag="VF308_09770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019699914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEX7436986.1"
                     /translation="MRIGHIQLANRLFAAPMAGVTDRPFRKLCRRLGAGYAVSE"
     gene            234..716
                     /locus_tag="VF308_09775"
     CDS             234..716
                     /locus_tag="VF308_09775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HEX7436987.1"
                     /translation="MEAWIDWLLKLLALPEYGLSTVFLIAFISATLLPLGSEPAVFGL
                     VKLNSELFWPAILVATAGGTLGGALTWWMGLGAERAYEHLTHRHPDVRALRWLRRHGA
                     KACLLSWLPIVGDPLCAVAGWLSLPFWPCVAYMAIGKFGRYLVMTAALLWAFPGQFSR
                     "
     gene            734..>1965
                     /locus_tag="VF308_09780"
     CDS             734..>1965
                     /locus_tag="VF308_09780"
                     /EC_number="3.4.17.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase M32"
                     /protein_id="HEX7436988.1"
                     /translation="MHAAYDELTRTWSRLHRLGHLQAIAGWDRAAMMPTKGSVARANA
                     LAEMETLLHRMRTDPTLEALIERAEGETLDDFERANLREIRRAWRSSNALPEALVEAK
                     SLAASRCEHAWQSQRPANDWAGFLGNFRDVLRLAREEARCLAEDSGLSPYDALLDQYE
                     PGMTGAEVDRVFGELQAWLPDLVRRARERQAAPAPEVASGPFPKAAQRALSLDVMTLL
                     GFDFEAGRLDESAHPFSGGVPEDTRLTTRYREDDFVQSLMGTIHETGHARYEQNLPRE
                     WLGQPVARARSMAIHESQSLSFEMQLGRSPGFVGLLAPRLAASFGNSPAFEPGNLQRL
                     MTRVKPGHIRVDADELTYPAHVILRYRIERRLIEGSIEAEDIPAQWDAGMASLLGIDT
                     RGNYTDGCLQDVHWSAGL"
BASE COUNT          299 a          675 c          667 g          324 t
ORIGIN      
        1 ttcgctcacc gcataaccgg cgcccaggcg cctgcaaagc ttgcggaacg gcctgtcggt
       61 gacccccgcc atcggcgccg cgaacagccg attcgccagc tggatgtggc cgatgcgcat
      121 gagggtggtc ggggtgctga aaagcgaggc agcagtatag cggtgccccc tgcttgcaac
      181 ggcgtgttcg gcgtgttacg agaagcgatg gcactgcgga taatcgagct gcgatggaag
      241 cgtggatcga ctggttgctg aagcttctgg ctttgcccga atacgggctc agcaccgtct
      301 tcctcatcgc gttcatttcc gcgaccttgc tgccgctcgg ctcggaaccc gcggtctttg
      361 gtctcgtcaa gctcaactcc gagctcttct ggccggcgat cctcgtcgcg accgccggtg
      421 gcacgctcgg cggcgcgctc acctggtgga tgggtctcgg cgcggagcgc gcctacgagc
      481 acctcacgca tcgccacccc gatgtccgcg cattgcgctg gctgcgccgc cacggcgcca
      541 aggcctgcct gctgtcctgg ctgccgatcg tcggcgaccc gctctgtgcc gtggcgggct
      601 ggctcagtct gccgttctgg ccctgcgtgg cttacatggc gatcggcaag ttcggccgct
      661 atctcgtgat gaccgccgcc ctcctgtggg cgtttcccgg tcagttttcg cgttgatgaa
      721 tggagaattg cggatgcacg ctgcgtacga tgagttgacg cgcacctggt cgcgcctgca
      781 tcgcctcggc catctgcagg cgatcgccgg atgggaccgc gccgcgatga tgccgaccaa
      841 gggcagcgtc gcgcgcgcca atgcgctggc cgagatggag accttgttgc accgcatgcg
      901 caccgacccg accctcgagg cgctgatcga acgggccgaa ggcgaaacgc tcgacgattt
      961 cgaacgcgcg aacctgcgcg agatccggcg cgcctggcgc agttcgaacg cgctgcccga
     1021 ggcgctcgtc gaagccaagt cgctcgcggc gtcgcgttgc gaacatgcat ggcagagcca
     1081 gcgtcccgcc aacgattggg ccggcttcct cggcaatttt cgcgacgtcc tgcgcctggc
     1141 ccgcgaggaa gcgcgctgtc tggccgagga ctcggggctg agcccctacg acgcgctgct
     1201 cgatcaatac gaacccggca tgaccggcgc cgaagtcgac cgcgtcttcg gcgagttgca
     1261 agcgtggctg ccggacctgg tgcgccgggc gcgcgagcgc caggccgcgc cggcgcccga
     1321 agtggcgagc ggcccgtttc ccaaggcggc ccagcgcgcc ctgagcctcg acgtgatgac
     1381 gctgctcggc ttcgatttcg aggccgggcg cctcgacgaa agcgcgcatc cgttcagcgg
     1441 cggcgttccc gaggacacgc ggctgaccac gcgctatcgc gaagacgact tcgtgcaaag
     1501 cctgatgggc acgatccacg agaccggcca tgcccgctac gagcagaacc tgccgcgcga
     1561 gtggctgggc cagcccgtcg cccgggcccg ttcgatggcg atccacgaga gccagagcct
     1621 gagcttcgag atgcagctcg ggcgcagccc gggcttcgtc ggcctgctcg cgcccaggct
     1681 cgcggcgagc ttcggaaatt cgccggcgtt cgagcccggc aacctgcagc gcctgatgac
     1741 gcgcgtgaag ccgggccaca tccgggtcga cgccgacgag ctcacctatc cggcgcacgt
     1801 gatcctgcgc taccgcatcg agcgcaggct gatcgagggc agcatcgagg ccgaagacat
     1861 tccggcgcag tgggatgccg gcatggcgtc gctgctcggc atcgacacgc gcggcaacta
     1921 caccgacggc tgcctgcagg acgtgcactg gagcgcgggc ctgtt
//
LOCUS       DASVHM010000520         1807 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_324986, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000520 DASVHM010000000
VERSION     DASVHM010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324986"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1297
                     /locus_tag="VF308_09785"
     CDS             <1..1297
                     /locus_tag="VF308_09785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015012931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEX7436989.1"
                     /translation="AQAQRSRAPMQRMADRVAGYFVVTVVGIALLTLLAWGFWGPEPR
                     WVYGLVNAVAVLIIACPCALGLATPMSIMVATGKAATKGILFRDAAAIENFRKVDTLI
                     VDKTGTLTEGKPSFNRALASEGFSEDEVLRLAASLDQGSEHPLAEAIVRAARERGLVL
                     ERPESFESRSGIGVSGRLGGRLILLGNTTLMRDAGVPFESMMDAAERLRAEGASIVHL
                     AVDGRLAGLLSVSDPIKATTAEALGSLRQTGMRVVMATGDGKTTAEAVATRLGIDEVH
                     GEVKPADKLALVTRLQSEGRVVAMAGDGINDAPALAKADVGVAMGTGTDVAMNSAQVT
                     LVKGDLRGIAQARQISLDTIANMKQNLGFAFVYNALGIPIAAGLLYPLTGWLLSPMIA
                     ALAMSLSSASVITNALRLSRDRPKSRPGHVTATLPATGR"
     gene            complement(1266..>1807)
                     /locus_tag="VF308_09790"
     CDS             complement(1266..>1807)
                     /locus_tag="VF308_09790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007851883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cation-translocating P-type ATPase C-terminal
                     domain-containing protein"
                     /protein_id="HEX7436990.1"
                     /translation="INLITDSGPALAMGVDPETDDVMARRPRRPGDRAIDTRMWKGVL
                     ELGLVMAIATLLTIDMYLPGGLIEGERDLANARTAGFTVLVLAQLFNCFNARSETTSA
                     FHRPFVNPWLWGAIALSLLLQIAVVNVDILNVAFGTVPLDARQWIVCVAMGSAVLWFS
                     ELRKAAIRAFSGRSPAASP"
BASE COUNT          305 a          607 c          619 g          276 t
ORIGIN      
        1 ggcccaggcg cagcgcagcc gggcgccgat gcaacgcatg gcagaccggg tggcgggcta
       61 cttcgtcgtc acggtggtcg gcatcgcgtt gctgaccctt ctcgcctggg gcttctgggg
      121 ccccgaaccg cgctgggtct acgggctcgt caacgccgtg gcggtcctca tcatcgcctg
      181 tccctgcgcg ctgggcctgg cgacgccgat gtcgatcatg gtcgcgacag ggaaggctgc
      241 cacgaaagga atcctgttcc gcgatgcggc ggcgatcgag aacttccgca aggtcgatac
      301 gctgatcgtc gacaagaccg gaacgctcac cgaaggcaag ccgtcgttca accgggcgct
      361 tgcgagcgag ggcttcagcg aagacgaagt cctgcgactg gcagcgagcc tggatcaagg
      421 cagcgagcat cctctggctg aagcgatcgt tcgcgccgcc cgagagcgcg gcctcgtact
      481 cgaacggcct gaatcgttcg agtcgcggag cgggatcggc gtcagtggcc ggctcggcgg
      541 tcgtctcatc ctcctcggca acacgacgct catgcgcgac gccggcgtgc cgttcgagtc
      601 gatgatggac gcggccgaac gccttcgcgc cgagggcgcg agcatcgtgc atctggcggt
      661 cgacggccgc ctggccggcc ttctttcggt ctccgatccg atcaaggcga ctaccgcaga
      721 agcgctgggc tcgctccggc aaacgggaat gcgcgtcgtg atggccacgg gtgacgggaa
      781 gaccaccgcc gaagccgtcg cgacccggct cggcatcgac gaagtccatg gcgaggtcaa
      841 gccggcggac aagctggcgc tcgtcacccg ccttcagtcg gaaggacgcg tcgttgccat
      901 ggcgggcgac ggcatcaacg acgcgcctgc gctggccaaa gccgatgtcg gcgtggcgat
      961 ggggacgggc accgacgtcg cgatgaacag cgcgcaggtg accctcgtca aaggcgatct
     1021 ccgcgggatc gcccaggcac ggcagatctc gctcgacacg atcgccaaca tgaagcagaa
     1081 cctcggcttc gccttcgtct acaacgccct gggcatcccg atcgcggccg gattgctcta
     1141 tccgctcacc gggtggctgc tgtcgccgat gatcgccgcg ctcgccatga gcttgagctc
     1201 cgcgtccgtg atcacgaacg cacttcgctt gagccgagac aggccgaaga gccggccagg
     1261 ccacgtcacg gcgacgctgc cggcgaccgg ccgctgaagg cgcggatcgc ggccttgcga
     1321 agctcgctga accagaggac ggcgctgccc atcgcgacgc agacgatcca ttgccgcgcg
     1381 tccagcggca cggtgccgaa ggcaacgttc aggatgtcga cgttgaccac ggcgatctgc
     1441 agcagcagcg acaaggcgat ggctccccac agccacgggt tcacgaacgg gcggtggaac
     1501 gcgctcgtcg tttccgaccg ggcattgaag cagttgaaga gctgggccag gacgagcacc
     1561 gtgaagcccg cggtgcgtgc attcgccagg tcgcgctcgc cttcgatcag accccccggc
     1621 aggtacatgt cgatggtcag caaggtcgcg atcgccatca ccaggccgag ctcgagcacg
     1681 cccttccaca tccgggtgtc gatggcccga tcgccgggcc ttcgcggccg gcgcgccatg
     1741 acgtcgtcgg tctcggggtc gacgcccatc gccagggcgg ggccggagtc ggtgatcagg
     1801 ttgatcc
//
LOCUS       DASVHM010000521         2013 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_831493, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000521 DASVHM010000000
VERSION     DASVHM010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_831493"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1052
                     /locus_tag="VF308_09795"
     CDS             <1..1052
                     /locus_tag="VF308_09795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX7436991.1"
                     /translation="AALLVASAALMPLGLWARRRIRSQVLSDRLAWVGLLFMGLFSSL
                     FVLTLLRDIVLLLGAAVVALRPAAFSFDVLVTLTAAAVPLLGLVVTLLGLVNARRTAA
                     VVSVDVPIADLPEALNGFTIVQISDVHVGPTIKRSYIDAIVGAVNALGADMVAVTGDL
                     VDGSVQQLAIHVAPLAGLASRHGTFFVTGNHEYYSGAPAWVVELRRLGLTVLLNEHVV
                     LRHDEASLVIAGVTDYGAHHFGEHHRSDPEAALAGAPAEVAVRVLLAHQPRSAMAAEQ
                     AGFHLQLSGHTHGGQFLPWNLLVRLQQPFTAGLHRWRALWVYTSRGTGYWGPPKRFGA
                     PSEITRLRLVPAAAA"
     gene            1142..1477
                     /gene="yajC"
                     /locus_tag="VF308_09800"
     CDS             1142..1477
                     /gene="yajC"
                     /locus_tag="VF308_09800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003066810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEX7436992.1"
                     /translation="MFISEAFAQAAPAATGATDSPFGNLGTMLPLVLMFVVLYFVMIR
                     PQMKRQKEHKTMIDALAKGDEVVTTGGLLGKITKMGESFVGVEIANGVEIQVQRAAVV
                     QVLPKGTVK"
     gene            1550..>2013
                     /locus_tag="VF308_09805"
     CDS             1550..>2013
                     /locus_tag="VF308_09805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEX7436993.1"
                     /translation="MNRYPLWKYATLVIALLVALIYTLPNFFPEAPAVQVSSGKATLK
                     VDAALAPRIEQILADASLKPDFVRFEGASVKARFGDLDSQRKAKDAITKALNPDPEDT
                     SYIVALNLLSRSPRWLTALHALPMFLGLDLRGGVYFLMQVDMKSALVKKAEAL"
BASE COUNT          285 a          701 c          677 g          350 t
ORIGIN      
        1 tcgcggcgct gctggtcgcc tcggcggccc tgatgccgct ggggctttgg gcacggcggc
       61 gcatccgctc ccaggttctc tcggaccggc tcgcctgggt cggcctcctc ttcatgggcc
      121 tgttctcgtc gctgttcgtg ctcacgctgc tgcgcgacat cgtcctgctg ttgggtgcgg
      181 ccgtggtcgc gctccggccc gcggcgttct cgtttgacgt cctcgtgaca ctgacggcgg
      241 cggcggtgcc cctgctcggc ctcgtcgtga cgctgctcgg cctggtcaat gcgcggcgca
      301 ccgccgccgt ggtctcggtc gatgtgccga tcgccgacct gcccgaggcg ctgaacggtt
      361 tcacgatcgt gcagatcagc gacgtgcacg tgggcccgac gatcaagcgc agctacatcg
      421 atgccatcgt cggcgccgtg aacgccctcg gcgccgacat ggtcgcggtc accggtgacc
      481 tggtcgacgg ctcggtccag caactcgcca tccacgtcgc accgctcgcc gggctcgcgt
      541 cgcgccacgg caccttcttc gtgaccggca accacgagta ctactcgggc gcaccggcct
      601 gggttgtcga actgcggcgt ctgggcctga ccgtgctgct caacgaacac gtcgtgctgc
      661 gccacgacga agccagcctc gtcattgccg gggtcaccga ctacggtgcc catcacttcg
      721 gcgagcacca tcgcagcgac cccgaggcgg cactggccgg agcgcccgcc gaggtggcgg
      781 tgcgcgtgct gctcgcgcac cagccgcgca gcgcgatggc cgccgagcag gccggcttcc
      841 atctgcagct ctccggccac acccatggcg gccaattcct gccctggaac ttgctggtcc
      901 ggctgcagca gccgttcacg gccgggctgc accgctggcg cgccctctgg gtctacacga
      961 gtcgcggcac cggctactgg gggccgccga aacgtttcgg cgcgccttcg gagatcacgc
     1021 ggttgcgcct cgtgcctgct gcggccgcct gaacggcgct tgcccagccg aacgccggcc
     1081 ccccttacaa tcgatcggtt tggccggcgc tgcgggccgg ggcgtcaacg aggaatctgc
     1141 cgtgttcatt tccgaagctt ttgcacaggc cgcgccggct gcgaccggcg cgaccgattc
     1201 gccgttcggc aacctgggca cgatgctgcc gctggtgctg atgttcgtgg tgctgtactt
     1261 cgtgatgatc cggccgcaga tgaagcggca aaaggaacac aagaccatga tcgacgcgct
     1321 ggccaagggc gacgaggtcg tcaccacggg cggtctgctc ggcaagatca cgaagatggg
     1381 cgagagcttt gtcggcgtcg agatcgccaa cggcgtcgag atccaggtgc agcgcgccgc
     1441 ggtggtgcaa gttctgccga agggcaccgt caagtagggg ctcgcccccg gcgcgcgtgg
     1501 tgcgcgcgca ggcttcgccc atggcgggcc ggccccgaga ggaaaaccga tgaatcgcta
     1561 tccgctgtgg aagtacgcga cgctcgtgat cgcgttgctg gtcgcgttga tctatacgct
     1621 gcccaatttc tttcccgagg cgcccgccgt gcaggtgagc agtggcaagg cgacgctgaa
     1681 ggtcgatgcc gcgctcgcgc cgcggatcga gcagatcctc gccgatgcga gcctcaagcc
     1741 cgatttcgtg cgcttcgaag gcgcgtcggt gaaggcgcgg ttcggcgacc tcgacagcca
     1801 gcgcaaggcc aaggacgcga tcaccaaggc cctcaacccc gatccggaag atacgagcta
     1861 catcgtcgcc ctgaacctgc tctcgcgctc gccgcgctgg ctcacggcgc tgcacgcgtt
     1921 gccgatgttc ctcggcctgg acctgcgcgg cggcgtctac ttcctaatgc aggtcgacat
     1981 gaagtcggcg ctcgtgaaga aggccgaggc gct
//
LOCUS       DASVHM010000522         1623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_760823, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000522 DASVHM010000000
VERSION     DASVHM010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_760823"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1394)
                     /locus_tag="VF308_09810"
     CDS             complement(<1..1394)
                     /locus_tag="VF308_09810"
                     /inference="COORDINATES: protein motif:HMM:NF015657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7436994.1"
                     /translation="MRNALVLAVLAALAGAVLLVHGGSAASGPTYNANVAPILDAKCT
                     SCHRLGGIAPFTLTTAADAKAHAAGIVRMTKAGLMPPWMPGDDSAAIIGRDVRRLTSA
                     ELATLAQWAAAGAPAGNAADRHSKPSAGAGLTGPGTTLVLAPNKAYTPHAANGAIDDY
                     HCFVLDPKLKRNAFVTAALIKPQRTGIVHHVILYEAAGAQAAEADQLNAASGGKGWTC
                     FGGPGLPLDLTSSDSLTRLGQPPWIAAWVPGHSTNALPARTGVLVHKGAKIVMQVHYN
                     LIAASGPDRTRAELRLRPASTPLTRLQTQLIAAPVELPCPDGVTGQQCTRQQAFQDEI
                     SKYGVENAAIPTALLKICGKTIADYPQSVGAGTAIATSCDRAVTQKETIYGVAGHMHL
                     RGHDLKVTIDPGTPKEQTLLHLPAWDFHWQDVYYLQHPVTVGPGDTVRVACSFDNSKA
                     DQPVVGTKQLTPRYV"
BASE COUNT          207 a          541 c          603 g          272 t
ORIGIN      
        1 acgtagcgcg gggtcagctg cttcgtgccg acgaccggct ggtcggcttt cgagttgtcg
       61 aacgagcagg cgacccgcac ggtgtctccg gggccgaccg tcaccggatg ctgcaggtag
      121 tagacgtcct gccagtggaa gtcccacgcc gggagatgca gcagggtctg ctccttgggc
      181 gtgccggggt cgatcgtcac cttgaggtcg tgcccgcgca ggtgcatgtg gccggcgacg
      241 ccgtagatcg tttccttctg ggtcacggcg cggtcgcacg acgtggcgat cgccgtgccg
      301 gcgccgaccg actgcggata gtcggcgatc gtcttgccgc agatcttcaa gagcgccgtc
      361 gggatcgccg cgttctcgac gccgtacttg ctgatctcgt cctggaatgc ctgctggcgg
      421 gtgcactgct gcccggtgac gccgtccggg cacggcagct ccaccggcgc cgcgatcagc
      481 tgcgtctgca ggcgggtcag cggtgtcgac gccggccgga ggcgcaactc ggcacgcgtc
      541 cggtccgggc cggacgcggc gatcaggttg tagtgcacct gcatgacgat cttcgcgccc
      601 ttgtgcacga gcacgccggt gcgcgcaggg agcgcgttcg tcgagtggcc gggcacccag
      661 gccgcgatcc acggcggctg tccaagccgg gtcagcgagt ccgagctcgt caggtcgagc
      721 ggcaggcccg ggccgccgaa gcacgtccag cctttgccgc cgctcgcggc attcagctgg
      781 tcggcctccg cagcctgcgc tccggcagcc tcgtagagga tcacgtggtg gacgatgccg
      841 gtgcgctgcg gcttgatcag tgccgcggta acgaaggcgt tccgcttgag cttcggatcg
      901 aggacgaagc agtggtagtc gtcgatcgcg ccgttcgcag cgtgcggggt gtacgccttg
      961 ttcggtgcga gcacgagcgt ggtgcccgga ccggtgaggc ctgcgccggc ggacggcttc
     1021 gagtggcggt cggctgcgtt gccggccggc gcgcccgccg cggcccactg cgcaagcgtc
     1081 gccagttcgg cgctcgtcag cctgcgcaca tcgcgaccga tgatcgcggc cgagtcgtcg
     1141 cccggcatcc acggcggcat cagcccggcc ttcgtcatgc gcacgatccc ggctgcatgc
     1201 gctttcgcgt cggctgcggt cgtcagcgtg aagggcgcga tgccaccgag ccggtggcag
     1261 ctcgtgcatt tcgcgtcgag gatcggcgcg acgttcgcgt tgtaggtcgg ccccgaggcg
     1321 gcagagccgc cgtgcacgag gaggactgcg cctgcgagcg ctgcgagcac ggccaggacg
     1381 agcgcgttgc gcatcggagc actgtacgca cagcccctgc ggccggccaa gaatcctccc
     1441 tgaggacgac gttcggcgcc ggccgcggag ctaccgtgtg agcatgcggg cgcgcctgca
     1501 gcttgccgat ctgatcgccg ttctgatcct cgtggtcttc gtagcggtgg tgggcacggg
     1561 gctgggagtg gcggcgtccc acgtgcgctc aggcgaccgg ccgaagtccg gccccttgcg
     1621 gat
//
LOCUS       DASVHM010000523         2538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1338819, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000523 DASVHM010000000
VERSION     DASVHM010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1338819"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..2001
                     /locus_tag="VF308_09815"
     CDS             97..2001
                     /locus_tag="VF308_09815"
                     /inference="COORDINATES: protein motif:HMM:TIGR03710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HEX7436995.1"
                     /translation="MNDTLTLTPPVSTKSPRPALSIAEHIVEVISDSGEGAQRCGQSL
                     AAIAARMGNGIWTTEIIPAEIQPPARSVAGASGIRIRIGSERVTNGGDQTDLVVAFNE
                     QVLIGRVQAGELKPGATILLESMWHTHRDPTVVASYAKTVEALRRDGFKVYEVPLEAR
                     CKELVSDPRKGKNMFVLGILCNLYGLDAALAREQIARIFGKKADAVIKSNVVLYEAGA
                     AWGEANLDFKYRIPAQRSSHAQIVINGNTAIALGVMASGMDICAMYPITPATSVSHYL
                     SEVFEKVGGLVHQAEDEIAACAFAIGASYAGKCAVTVTSGPGYSLKQEAIGLAVMAEI
                     PLVVVNVQRGGPSTGQPTKVEQGDALAAIFGSHGDAPKVVMAPCTIEDCFYSVITARK
                     IAETFGMVVVVLSDASLSTAQQPFPRPEFSEEWLAPPVDQTPVPAGAKPYDWDPVTGL
                     SRRFQPGQPGGMHTLTGLAHDRASKVAYDPTINEEGLRARSLKLAALQKTLKAPPVFG
                     GDAGDMLLVGWGSTMGAIEEAVTRLRAEGLAVSSMHLRFLQPMPSGIREILKRFRHVM
                     TIEGNWSDKPEDELIDEDNRRYSALAMLLRSRFLVDIDCWSEARGQPIKPGDICRVAR
                     DALQLKGQTS"
     gene            1998..>2538
                     /locus_tag="VF308_09820"
     CDS             1998..>2538
                     /locus_tag="VF308_09820"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEX7436996.1"
                     /translation="MTRSLSQCVIKLHEEHHALEDYQGGVPRWCNGCGDNAILAAMQR
                     LCSEENLAPENTVFVSGIGCSSRLPHYMKTYGFHGIHGRAFPVAEGIKMARPDLSVFV
                     STGDGDCCSIGAAHWIHALRYNMNLTVMLHDNHVYGLTKKQASPTSPRGFKSNTTPYG
                     ATLEPMNPLTVTLGVRGASF"
BASE COUNT          446 a          898 c          837 g          357 t
ORIGIN      
        1 aatcgcgacg cggccggcag gctcttcggc atcgaccgcg gcgaacgcaa cttcgcccgc
       61 gtgcatctcg cctgatccat ccgccaccgc cacatcatga acgacacgct gaccctcact
      121 cctcccgttt ccaccaagtc cccgcgcccc gccctctcga tcgccgaaca catcgtcgaa
      181 gtcatcagcg actcgggcga aggcgcgcag cgctgcgggc agtcgctggc cgcgatcgcc
      241 gcgcgcatgg gcaacggcat ctggaccacc gagatcatcc cggccgagat ccagccgccc
      301 gcgcgcagcg tggccggggc gagcggcatc cgcatccgca tcggctccga gcgggtgacg
      361 aacggcggcg accaaaccga cctcgtcgtg gccttcaacg agcaggtcct aatcggtcgg
      421 gtgcaggccg gggagctcaa gcccggcgcg acgatcctgt tggagagcat gtggcacacc
      481 catcgcgacc cgacggtcgt ggcgtcgtac gccaagacgg tcgaggcgct tcggcgcgac
      541 ggcttcaagg tctacgaagt tccgctcgag gcacgctgca aggagctggt gagcgacccg
      601 cgcaagggca agaacatgtt cgtgctcggc atcctgtgca acctgtacgg gctggatgcg
      661 gcgctggcgc gcgagcagat cgcgcgcatc ttcggcaaga aggccgacgc cgtcatcaag
      721 agcaacgtcg tgctgtacga ggccggcgcg gcctggggcg aggcgaacct cgacttcaag
      781 taccgcatcc cggcgcagcg ctcgagccac gcgcagatcg tcatcaacgg caacaccgcc
      841 atcgcgctgg gcgtgatggc ctcgggcatg gacatctgcg cgatgtaccc gatcacaccc
      901 gccacctcgg tttcgcacta cctgagcgag gtgttcgaga aggtcggcgg cctggtgcac
      961 caggccgagg acgagatcgc ggcctgcgcc ttcgccatcg gcgcctccta cgccggcaag
     1021 tgcgcggtga ccgtcacctc gggccccggc tactcgctca agcaggaagc catcggcctg
     1081 gccgtgatgg ccgagatccc gctggtcgtc gtcaacgtgc agcgcggcgg cccgagcacg
     1141 ggtcagccga cgaaggtcga gcagggcgat gcgctcgccg ccatcttcgg cagccacggg
     1201 gatgcgccca aggtggtgat ggccccctgc accatcgagg actgcttcta ttcggtgatc
     1261 accgcccgca agatcgctga gaccttcggc atggtggtgg tggtgctgtc ggacgcgagc
     1321 ctgtccaccg cgcagcagcc cttcccgcgc ccggagttca gcgaagaatg gctcgcgccg
     1381 ccggtcgacc agacaccggt gccagccggc gccaagccct acgactggga tccggtcacg
     1441 ggcctgtcgc ggcgctttca gcccggccag ccgggcggca tgcacacgct gacgggcctg
     1501 gcgcacgacc gcgccagcaa ggtcgcctac gacccgacga tcaacgaaga aggcctgcgc
     1561 gcgcgcagcc tcaagctcgc cgcgctgcaa aagacgctga aggcgccgcc cgtcttcggc
     1621 ggcgacgccg gcgacatgct gctcgtcggc tggggcagca cgatgggcgc gatcgaggag
     1681 gcggtcacgc ggttgcgcgc cgagggcctc gccgtgtcgt cgatgcacct gcgcttcctg
     1741 cagccgatgc cctcgggcat ccgcgagatc ctgaagcgct tcaggcacgt catgacgatc
     1801 gagggcaact ggtccgacaa gcccgaagac gagttgatcg acgaagacaa ccgccgctac
     1861 tcggcgctgg cgatgctgct gcgctcgcgc ttcctggtcg acatcgactg ctggagcgag
     1921 gcgcgcggcc agccgatcaa acccggcgac atctgccgcg tcgcgcgcga cgcattgcaa
     1981 ctgaagggcc aaacatcatg actcgatccc tgagccagtg cgtcatcaag ctgcacgagg
     2041 aacaccacgc cctggaggac taccagggcg gcgtgccgcg ctggtgcaac ggctgcggcg
     2101 acaacgcgat cctggcggcg atgcagcgcc tgtgcagcga agaaaacctg gcgcccgaga
     2161 acacggtgtt cgtgtcgggc atcggctgct cgagccggct gccgcactac atgaagacct
     2221 acggcttcca cggcatccac ggccgcgcgt tcccggtcgc cgagggcatc aagatggccc
     2281 gccccgacct gagcgtgttc gtcagcaccg gcgacggcga ctgctgcagc atcggcgcgg
     2341 cgcactggat ccacgccctg cgctacaaca tgaacctgac ggtcatgctg cacgacaacc
     2401 acgtctacgg cctgaccaag aagcaggcct cgccgacctc gccgcgcggg ttcaagagca
     2461 acaccacgcc gtacggagcg acgctcgagc cgatgaaccc gctgacggtg acgctcgggg
     2521 tgcgcggcgc gtcgttcg
//
LOCUS       DASVHM010000524         2877 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_687732, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000524 DASVHM010000000
VERSION     DASVHM010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2877
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_687732"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..272
                     /locus_tag="VF308_09825"
     CDS             <1..272
                     /locus_tag="VF308_09825"
                     /inference="COORDINATES: protein motif:HMM:TIGR01552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008219 - cell death [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HEX7436997.1"
                     /translation="IVRVVSRITATEAARSFSEVLNRVASGEEIELTRSGAPVAVIGP
                     PQTRLISAARFRELLATAPSPDADFGEDLRHVRASAGPPGDPWPS"
     gene            260..658
                     /locus_tag="VF308_09830"
     CDS             260..658
                     /locus_tag="VF308_09830"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HEX7436998.1"
                     /translation="MAVLIDTDLLIDLEQGNDAVESLLGEEERAISVITVSELLHGAL
                     RATGDRRARRHAFVEHVIGGIQAIPISETVARVHADLWADLAARGETIGAHDLWIAAT
                     AVTHGFGVATGDRTDFDRVPGLRVVAAEPD"
     gene            complement(669..>2877)
                     /locus_tag="VF308_09835"
     CDS             complement(669..>2877)
                     /locus_tag="VF308_09835"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEX7436999.1"
                     /translation="GVPHITARTEHDAWFAQGYVHAQDRLAFMVLMRRLACGRLAEIG
                     GAEMLPSDRLMRTLGLRHVAEQELAQLEPGHLAALEAYCAGVTAAVGGLRALPFELQI
                     LGNDYESWRPVDMLTVVRILSFGLSNNWEKELLRADMTRALGPELAAKIDPGYPKDHP
                     VAMTPGVDWQGDGLLLADQILAVRDLIGLAPEATGSNNWVVSGERSVTGNPLFAGDPH
                     LTTSMPGIWQQQAVYVGDHFARGATLPGFPGFWMGQINHGAWSITNTMADTMDLFIER
                     IDGDNYEFEGERRPLTVRREEIKVRGQSRPEILEVRSTHHGPIVTDILGHDPSEPLAL
                     SWGSLMAPALGDQQVTVLGIDDIDTLVGAFEHYNGPVSNLLFCNRDGDIGYRMIGKLP
                     LRRGGTPDLPKPGWTGEFEWDGWVPFSEMPEVRNPECGFLVTANNRIVDDDYPHHVTT
                     DWLEGYRARRITELIESREKHDADDFQKMLSDVYSIPGVETARRLALLDAPGTREREA
                     IDRLRAWDGNLDPGTIAGTIYQAFTLRLGREFCRAVIGDERLTHRYLDGANNGFLEHV
                     TTPWRWHSHLLKLWAEGDESLIGGSWDDLALESLRQALDDLTERYGADQSAWRWGKVH
                     RLDFPHLLADGVKIIDKLFSRSLEIGGGHETICQVAFNPVAPYKGIWAPSWRMVADPC
                     DPDAARWQTFTGQSGHPASEHYDDVMGRWRDGEMQPMAGEAPWRTLMLEPYNG"
BASE COUNT          449 a          974 c          985 g          469 t
ORIGIN      
        1 atatcgtgcg agtcgtgtct cgcataacag ccaccgaagc agccagaagc ttctccgagg
       61 tcctgaaccg ggtcgccagc ggcgaggaga tagagctgac tcgtagcggc gcgccggttg
      121 cggtcatcgg gcctcctcaa acccgcctga tttcagcggc gcgcttccgt gagctactgg
      181 caacagcgcc gagccccgat gcggacttcg gtgaggatct gcgccacgtt cgtgcgagcg
      241 ccggtccgcc cggagatccg tggccgtcct gatcgatacc gatcttctga tcgaccttga
      301 gcaaggcaac gacgccgtcg agagcctgct cggcgaggaa gagcgggcga tcagcgtgat
      361 caccgtcagc gagctgctgc acggcgcgct acgcgcgacc ggcgaccggc gcgctcggcg
      421 gcacgcgttc gttgaacacg tgatcggcgg cattcaggcg atcccgatca gcgaaacggt
      481 cgcgcgcgtg cacgccgatc tctgggccga cctggccgcg cgcggtgaga cgatcggcgc
      541 gcatgatctg tggatcgccg cgaccgccgt cactcatgga ttcggcgtgg cgaccggcga
      601 ccgcactgac ttcgaccggg ttccgggcct acgggtggtc gccgccgagc cagactgatt
      661 acgccggatc agccgttgta cggctccagc atcagcgtgc gccacggcgc ctcgccggcc
      721 atcggctgca tctcgccgtc gcgccagcgg cccatcacgt cgtcgtagtg ctcgctcgcc
      781 gggtggccgg actggccggt gaaggtctgc cagcgcgcgg cgtctgggtc gcacgggtcg
      841 gcgaccatgc gccagctcgg cgcccagatg cccttgtagg gagcgaccgg attgaaggcg
      901 acctggcaga tcgtctcgtg tccgccgccg atctcgagcg agcgcgaaaa cagcttgtcg
      961 atgatcttca cgccgtcggc cagcaggtgc ggaaagtcga gccggtgcac cttgccccag
     1021 cgccacgccg attggtcggc gccgtaacgc tcggtcaggt cgtcgagcgc ctgccgcagc
     1081 gattcaagcg ccaggtcgtc ccacgagccg ccgatcagcg actcgtcgcc ttcggcccac
     1141 aacttcagaa ggtgcgagtg ccagcgccac ggtgtcgtga cgtgttcgag aaaaccgttg
     1201 ttggcaccat ccaggtaacg gtgggtcagc cgctcgtcgc cgatcaccgc acggcagaac
     1261 tcgcggccga ggcgcagcgt gaaggcctga tagatcgtgc cggcgatcgt gccgggatcg
     1321 aggtttccgt cccacgcgcg cagccggtcg atcgcctcgc gttcgcgcgt gcccggcgcg
     1381 tcgagcagcg ccagccggcg cgcggtctcg acgccgggga tcgagtacac gtcgctcagc
     1441 atcttctgaa aatcgtcggc gtcgtgcttt tcgcgcgact cgatcagttc ggtgatgcgg
     1501 cgcgcgcgat agccctcgag ccagtcggtc gtgacgtggt gcgggtagtc gtcgtcgacg
     1561 atgcggttgt tggccgtcac aaggaagccg cactcagggt tgcgcacttc aggcatctcg
     1621 ctgaacggca cccagccgtc ccactcgaac tcgccggtcc aaccgggctt tggcaggtcg
     1681 ggcgtgccac cgcgccgcag cggaagcttg ccgatcatgc ggtagccgat gtcgccgtcc
     1741 cggttgcaga acagcaagtt cgagaccggg ccgttgtagt gctcaaaggc gccgacgagc
     1801 gtgtcgatgt cgtcaatccc gagcacggtc acctgctggt cgccgagcgc cggcgccatc
     1861 aggctgcccc acgacagggc gagcggctcg gacggatcgt gcccgaggat gtccgtgacg
     1921 atcggcccgt gatgcgtgct gcgaacctcg aggatctcgg gccggctttg gccgcgcacc
     1981 ttgatctcct cgcgacgcac ggtcagcggc cggcgctcgc cctcgaactc gtagttgtcg
     2041 ccgtcgatcc gctcgatgaa caggtccatc gtgtcggcca tcgtgttcgt gatgctccac
     2101 gcgccgtggt tgatctgccc catccagaag cccgggaagc ccggcagcgt cgcgccgcgg
     2161 gcgaaatggt cgccgacgta aacggcctgc tgttgccaga tgccgggcat cgacgtggtg
     2221 aggtgcgggt caccggcgaa caacggattg ccggtgacgc tgcgctcgcc gctgacgacc
     2281 cagttgttcg agccggtcgc ctccggcgcc agaccgatca ggtcgcgcac ggcgagaatt
     2341 tggtcggcca gcagcaggcc gtcgccctgc cagtcgacgc cgggcgtcat cgcgacaggg
     2401 tgatcctttg gatagccggg atcgatcttc gcggccagct ccggcccgag cgcacgcgtc
     2461 atgtcggcgc gcagcagctc cttctcccag ttgttcgaca ggccgaacga caggatgcgc
     2521 acgaccgtga gcatgtcgac gggccgccag gactcgtagt cgttgcccag gatctgcagt
     2581 tcgaacggca gcgcccgcag tccgccgacg gcggcggtga cgcctgcgca gtaggcctcg
     2641 agcgcggcca ggtggccggg ttcgagctga gccagctcct gctcggcgac gtggcgcagg
     2701 ccgagcgtgc gcatcaggcg gtccgaaggc agcatctcgg cgccgccgat ctcggccaga
     2761 cggccgcacg caagccggcg catcagcacc atgaaggcga gacggtcctg cgcgtgcacg
     2821 tagccctgag cgaaccaggc atcgtgctcg gtacgcgccg tgatgtgcgg cactccc
//
LOCUS       DASVHM010000525         1552 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1121859, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000525 DASVHM010000000
VERSION     DASVHM010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1121859"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VF308_09840"
     CDS             complement(<1..485)
                     /locus_tag="VF308_09840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437000.1"
                     /translation="MPNGAPCSTISKSQGSSSQRWAMSMRQCLRSMRAQRDAVCQLPL
                     LASARAGLTMRIEERPRRPRDKDVLDIEAPNVDSSRMRCAGKDVLSLALIDARNHTLR
                     WIAACEAGLGGAALTAPLLAEINPPLWELGHIGWFQEYWTSRNVQRQRGERCDPSHPK
                     LA"
     gene            530..1273
                     /gene="senB"
                     /locus_tag="VF308_09845"
     CDS             530..1273
                     /gene="senB"
                     /locus_tag="VF308_09845"
                     /inference="COORDINATES: protein motif:HMM:TIGR04348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0001887 - selenium compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenoneine biosynthesis selenosugar synthase
                     SenB"
                     /protein_id="HEX7437001.1"
                     /translation="MVVLTGTDLYRDIRTDAAAQRSLQLATHLVVLQDRGLLELEPAL
                     RRKCTVIYQSAPRLAAAAPPKRVLRIVSVGHLRDEKDPVTFMRAAARLRHRSDIRFAQ
                     IGAALEPSLEAAARRTQAEYPNYRWLGALERAATRQQIRNAHLLVNTSRMEGGAQVIL
                     EAARSSTAVIASRIPGNCGMLGRRHAGWFEVGDDAHLARLIERAADDRRFLARLRAQT
                     AARAPLFEPAEEEKRLLRLIRSALPSRQP"
     gene            1270..>1552
                     /gene="selD"
                     /locus_tag="VF308_09850"
     CDS             1270..>1552
                     /gene="selD"
                     /locus_tag="VF308_09850"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020706005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0001887 - selenium compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEX7437002.1"
                     /translation="MTQPSITPVRLTSLSHGGGCGCTIAPGVLAEILKGSSGFAVPKE
                     LMVGIETADDAAVYRLNDEQALIATTDFFMPIVDDPFDFGRIAATNAISD"
BASE COUNT          245 a          586 c          496 g          225 t
ORIGIN      
        1 gcgagcttcg ggtggctcgg gtcgcagcgc tcgccacgct ggcgctgcac gttgcgcgaa
       61 gtccagtact cctgaaacca accgatgtgg ccgagctccc agagcggcgg gttgatctcg
      121 gccagcagcg gggcggtcag cgccgcgccg ccgagccccg cctcgcaagc cgcgatccag
      181 cgcaacgtat gattgcgcgc gtcgatcaac gcgagcgaca acacgtcctt cccggcgcag
      241 cgcatgcgcg acgaatccac gttcggggcc tcgatgtcga gcacgtcctt gtcccgcggc
      301 cttcgcggcc tttcctcgat ccgcatcgtc agcccggctc tcgccgaggc caacaacggc
      361 aactggcaca ccgcatcgcg ctgggcgcgc atgctccgca aacattgtcg catcgacatc
      421 gcccagcgct ggctggatga gccctgggac ttgctgatcg tgctgcacgg cgcgccgttc
      481 ggcaccgagc atcgcggcct ggtcgaaagc gcacccggac cggccgctcg tggtcgtgct
      541 gaccggcacc gatctctacc gcgacatccg caccgatgcc gcggcgcagc gctcgcttca
      601 actcgcgacc catctcgtcg tgctgcagga ccgggggctg ctcgagctcg agcccgccct
      661 gcgccgcaag tgcaccgtga tctaccagtc ggcgcccagg ctggcggccg ccgcgccgcc
      721 caagcgcgtg ttgcggatcg tgagcgtcgg ccatctgcgc gacgagaagg atccggtcac
      781 gttcatgcgc gccgccgcgc ggctgcgcca tcgcagcgat attcgcttcg cgcagatcgg
      841 cgcggccctc gaaccttcgc tcgaagcggc cgcgcggcgc acccaggcgg agtatcccaa
      901 ctaccgctgg ctcggcgcgc tcgagcgagc cgccacccgg cagcaaatcc gcaacgccca
      961 cctgctggtc aacaccagcc gcatggaagg cggcgcgcag gtgattctcg aagcggcgcg
     1021 aagcagcacc gcggtgatcg cgtcgcgcat cccgggcaac tgcggcatgt tggggcgacg
     1081 ccatgcggga tggttcgagg tcggcgatga tgcgcacctc gcccggctca tcgagcgcgc
     1141 cgccgacgac aggaggttcc tcgcgcgact gcgcgcgcag accgccgcac gcgcgccgct
     1201 cttcgagccc gccgaggaag aaaagcgcct ccttcgactc atccgctccg ccctgccatc
     1261 aagacagcca tgacccagcc ctccatcaca cccgtccgcc tgacctcgct ctcccacggc
     1321 ggcggctgcg gctgcacgat cgcgcccggc gtgctcgcgg aaatcctgaa gggctcgagc
     1381 ggcttcgccg tgccgaagga actgatggtc ggcatcgaga ccgccgacga cgccgcggtg
     1441 taccgcctca acgacgagca ggcgctgatc gcgaccaccg atttcttcat gccgatcgtc
     1501 gacgacccgt tcgacttcgg ccggatcgct gcgaccaacg cgatcagcga cg
//
LOCUS       DASVHM010000526         2738 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1048560, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000526 DASVHM010000000
VERSION     DASVHM010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2738
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1048560"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..85
                     /locus_tag="VF308_09855"
     CDS             11..85
                     /locus_tag="VF308_09855"
                     /inference="COORDINATES: protein motif:HMM:NF015596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437003.1"
                     /translation="MYSADKKAGDMTGDKFKDVWHVIK"
     gene            119..673
                     /locus_tag="VF308_09860"
     CDS             119..673
                     /locus_tag="VF308_09860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006221276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEX7437004.1"
                     /translation="MRAQDEADIVACIPSLRRYARGLVSDRDRADDLVQDTLERAWSR
                     FSMWQRRGEIRAWMFGIMHNHFVDRLRAQRSRPEDSAGDDLPEQPQRPLQTDALEVRD
                     LDRLLQRLPPEQREVLLLVGVEELGYQEVALTLGVPVGTVMSRLSRGRAKLRAEMIGR
                     EAPGNEPPGQETVGPSAGRIQRVK"
     gene            670..1527
                     /locus_tag="VF308_09865"
     CDS             670..1527
                     /locus_tag="VF308_09865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013395833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HEX7437005.1"
                     /translation="MTMADHKPAAAGNGSNPSPITEADLHAYVDRQISPARLALVERF
                     LAVHPEERARTRDWQQQNEMMRGLLNPVLSEPVPLGLPLKPTVVLWPWRGLAAGVLIA
                     VVSASSAWSLRGALDADAARLAFANPSTAHFGTAAAKESELSGFAQRAAIAHVVYSPD
                     MRRPVEVGADQEQALVTWLTKRMGTAVRPPSLASLGYELIGGRLLPGEKGPVAQFMYG
                     APGGQRLTLYVTREVAGQDTSFKYGKDGPVNVFYWVEDHFGYAISAGADRDELMKVSQ
                     EVYRQLKPR"
     gene            complement(1626..>2738)
                     /locus_tag="VF308_09870"
     CDS             complement(1626..>2738)
                     /locus_tag="VF308_09870"
                     /inference="COORDINATES: protein motif:HMM:NF024772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437006.1"
                     /translation="EETLMDKCKLPGPWRIVAMPLLAFATLAFTATAPGTAEAQTLVK
                     LKAGMVTGIDQVGLPIALERGFFEKHGLDVTVARPYATGVDALNALQAGESDIVQVGV
                     PMIGAVLRGMDLVALGNYSGNATKLGSDATVALVAREGSGIDKNNLATLKGKKIAASF
                     GTINHLYALALIEKAGLTPADVTLVNTPPPDMTVALLSKGIDAFSGWDPWPIVAQKDV
                     PGAYLVVRGGDVISYLGFNVATRGWVEKNGETIEKFLAAVSEADKWMRANPKLAAQVA
                     TRWIPGLKQDVAEAAMQFNIQQNDRRLSANNYRALWAAQDRLNRLGILKSTFDVNKHI
                     EPKHILKVMKDKPELFSDLPPIPNDVAIKPGFVFKP"
BASE COUNT          445 a          912 c          924 g          457 t
ORIGIN      
        1 gccggtctat ctgtactccg ccgacaagaa ggctggcgac atgaccggcg acaagttcaa
       61 ggacgtgtgg cacgtcatca agtgaccggg gtgcatcggc tctgctgaac gtcgctgcat
      121 gcgcgcccag gacgaagccg acatcgtcgc ctgcatcccc agcctgcgcc gctacgcgcg
      181 cgggctggtg tcggaccgcg accgcgccga cgatctggtg caagacaccc tggagagagc
      241 ctggtcgcgg ttctcgatgt ggcaacggcg tggcgagatc cgggcctgga tgttcggcat
      301 catgcacaac cacttcgtcg accgcttgcg cgcgcagcgc agccggcccg aagacagtgc
      361 cggcgacgat ctgcccgagc agccgcaacg accgctgcag accgacgccc ttgaagtgcg
      421 cgatctcgac cggctgctgc aacgcctccc gcccgagcag cgcgaggtgc tgcttctcgt
      481 cggcgtcgag gagctcggct accaggaggt cgccctgacg ctcggcgtgc cggttggtac
      541 ggtgatgtcg cggctgtcac gcggccgggc gaagctgcga gccgagatga tcgggcgaga
      601 ggcgcccggc aacgagcccc cgggccagga gacggtcggc ccatcggccg gcaggattca
      661 acgcgtgaaa tgaccatggc cgaccacaaa cccgccgcgg ccggcaatgg gagcaacccg
      721 tcgccgatca ccgaagccga tcttcatgcc tatgtcgatc gccagatctc gcccgcacgg
      781 ctggcgctgg tcgagcggtt tcttgccgtg catccggagg agcgcgcgcg gacgcgcgac
      841 tggcagcagc agaacgagat gatgcgtggc ctgctgaacc cggtgctcag cgagcccgtg
      901 ccactgggcc tgccgctgaa accgacggtg gtgctctggc cgtggcgcgg cttggcggcg
      961 ggcgtgctga tcgcagtcgt cagcgcgagc tcggcgtggt cgctgcgcgg tgcgttggat
     1021 gccgacgcgg cacgtctagc ctttgcgaat ccctccaccg cgcactttgg aacggccgcc
     1081 gccaaggaga gcgagctgag cggcttcgcg cagcgcgccg ccatcgccca cgtcgtatac
     1141 agccccgaca tgcggcggcc cgtggaggtc ggcgccgacc aggagcaagc gctcgtgaca
     1201 tggctgacca agcggatggg aaccgccgtg cgcccgccgt cgctggcctc cctgggctat
     1261 gagctgatcg gtggccgtct gctgcccggc gagaaggggc cggtcgcgca gttcatgtac
     1321 ggtgcgcccg gcggacagcg gctcacgctg tacgtgacgc gcgaagtcgc cggccaagat
     1381 acgtcgttca agtacggcaa ggacggaccg gtgaacgtgt tctattgggt cgaagatcac
     1441 ttcggctatg ccatctcggc cggcgccgat cgcgacgagc tcatgaaggt gtcccaagag
     1501 gtctaccggc agttgaagcc cagataggtg gcgccagccg ggagagcgga agtggacccc
     1561 agatgccgag caggggctcc tgcatcggct cgcgcgtcat atccttgctg cagggctgcg
     1621 atccatcagg gtttgaagac aaagccgggc ttgatcgcca cgtcgttagg gatcggcggc
     1681 aggtccgaga acaactcggg cttgtccttc atcaccttca ggatgtgctt cggctcgatg
     1741 tgcttgttga catcgaaggt cgacttcagg atgccgagcc ggttcagccg gtcctgcgcc
     1801 gcccacagcg cgcggtagtt gttcgccgac aggcgtcggt cgttctgctg gatgttgaat
     1861 tgcatcgcgg cctcggccac gtcctgcttc agcccgggga tccagcgcgt cgcgacctgg
     1921 gccgcgagct tcggattggc gcgcatccac ttgtcggcct ccgagaccgc agcgaggaat
     1981 ttctcgatcg tctcgccgtt cttctcgacc cagccgcgcg tcgcgacgtt gaagccgaga
     2041 taggagatca catcgccacc gcggaccacc aaatacgcgc ccggcacgtc cttctgcgcg
     2101 acgatcggcc acggatccca gccggagaag gcgtcgatgc ccttggacag caacgccacc
     2161 gtcatgtcgg gcggaggcgt gttgaccagc gtcacatcgg ccggcgtgag cccggccttt
     2221 tcgatcaggg cgagcgcata caggtgattg atcgtaccga acgacgcggc gatcttcttg
     2281 cccttcaagg tcgcgaggtt gttcttgtcg atgcccgagc cctcgcgtgc gaccagcgcc
     2341 accgtcgcgt cggagcccag cttggtggcg ttgccgctgt agttgccgag cgccaccagg
     2401 tccatgccgc ggagcaccgc gccgatcatc ggcacgccca cctgcacgat gtcgctttcg
     2461 ccggcctgca gcgcgttcag cgcatcgaca ccggtggcat agggtcgcgc gacggtcacg
     2521 tcgagcccgt gtttctcgaa gaagccccgc tccagcgcga tcggcaggcc gacctggtcg
     2581 atgccggtca ccatgccggc cttcagcttc acgagcgtct gcgcctcggc cgtccccggc
     2641 gcggtggcgg tgaaggccag cgtcgcgaac gccagcagcg gcatggcgac gatgcgccag
     2701 ggtcctggca acttgcattt gtccatcaaa gtctcctc
//
LOCUS       DASVHM010000527         4413 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1339033, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000527 DASVHM010000000
VERSION     DASVHM010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4413
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1339033"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1166)
                     /locus_tag="VF308_09875"
     CDS             complement(<1..1166)
                     /locus_tag="VF308_09875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase family protein"
                     /protein_id="HEX7437007.1"
                     /translation="MNSNASRPVPPANTGSTFLNVLADTTLALLHLERRFDPFFRPAF
                     DAVLRDPLARFVTFLINAGRVDEKLAIAEEKPLPGEEEFVDSIIASFQEQMRLLWKPG
                     GFERGGNTKTHGIVRAEFIVHDGLPAELRRGIFAEPRTYRAWVRFSGPGPYITPDIDD
                     VGFMSISIKLMGVPGAKLMDEEKSTQDMFGVSPPTFVTPDVRANAQLQKESLKNTSIY
                     YFVNLDRPHLLDGIMQALWIKTQSSPFEAPYFSCVPYLLGDGQAMQYSVWPKTTKRTP
                     VPNLPFRPPDDYLRAAMVGALDAGDVELDFRIQRQTDPHLMPIENASVLWPERLSPRV
                     SVATLRIPRQKFDSPAQMEFAKRLSYNPWHSIAEHRPLGNQSRARRRMYLALSTL"
     gene            complement(1178..2668)
                     /locus_tag="VF308_09880"
     CDS             complement(1178..2668)
                     /locus_tag="VF308_09880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437008.1"
                     /translation="MSTALPVELGDIQGLVRFGYKHHTEASFLLLRVRDRDAARRWLA
                     AVPVCTAETIEPPPETALQVAFTGEGLRALGVADAIVDGFAADFVSGMGNDANRARRL
                     GDVGANDPGQWQWGGAGRVPHVLLLLYALPGKLADFRRKVEAQCEGGFDMLAGLATSD
                     LDGIEPFGFTDGISQPLLDWERRRPARDAEREEYSNLSCLGEYLLGYPNEYGGYTDRP
                     LLDPALAGTRLPRAEDDPARADLGRNGSYLVMRQLRQDVHGFWQFVDRCAGGNPGLRE
                     RIAGAMVGRGRDGVPLVGPADEAIEGGGAPGDLNAFTYRSDPDGLRCPLGAHVRRSNP
                     RNADLPLGAPGIVSWAKRTLGFDADALAHDLVASTRFHRLLRRGREYGVGVSPEQALA
                     GPAATGETGLHFICLGANIARQFEFVQNAWAMGVHFDGLPNESDPLLGTRLPAADGTP
                     TDGFSMPRADGAAERLAGLPQFVTVLGGAYFFLPGIRALRFLATAH"
     gene            complement(2724..4022)
                     /locus_tag="VF308_09885"
     CDS             complement(2724..4022)
                     /locus_tag="VF308_09885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437009.1"
                     /translation="MTPQDHFLVVAPVAAGKEPALRALLHSMNTEPGMADPRNGVVPF
                     AQFDRLHFARLVLLDDALQADLRVHGVEPMRLPTCLVFLADCDGPADDVLADLAERAR
                     PGLARIFAHCEGFTDATELLAWMRAREQPSAASFVNWVGRSVRQIREESALQRALAAR
                     VPRRPLAAPGEGERVRRELAAWVKSEVDAGRLALTPDAPTPFGWQLAKLANLVGVPLI
                     GILALPLLIVGAPLFVFLLRRREESDPELCPRPRPADLEALQELEDREITNQYTAIGA
                     VKPGLFRRWLLTVLLVLTSFACRQIFTRGYLARVQTIHFAHWFFFDDKTRVVFVSNYD
                     GSHQGYMDDFINKVGWGLNLLFSNGVGWPRTRWLVHGGSRIEQKFKYYQRRHQVPTQV
                     WYKAYPGLALVELNRNHRIREGLQQATMSDAQALAWLGLL"
     gene            complement(4026..>4413)
                     /locus_tag="VF308_09890"
     CDS             complement(4026..>4413)
                     /locus_tag="VF308_09890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006160829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437010.1"
                     /translation="LDDLFRASPAGPIPSGSAEGTAIIAPGTKYSMPIATVINHFGWQ
                     GKVFDAEKGVLKNRLLAFGFEAIVARVYKTPSWLDNKECIVLDYSETSMLAHYVRDEI
                     RLIGPGFYLGKVYWAKDRLIDFCLKF"
BASE COUNT          669 a         1446 c         1639 g          659 t
ORIGIN      
        1 agcgtcgaca gcgccaggta catgcgccgg cgcgcgcggc tctggttgcc gagcgggcga
       61 tgctcggcga tcgagtgcca cgggttgtag gagagacgct tggcgaattc catctgcgcc
      121 ggcgagtcga acttttgccg cgggatccgc agcgtcgcca ccgagacgcg cggcgacagc
      181 cgctcgggcc agagcaccga ggcgttctcg atcggcatga ggtgcgggtc ggtctggcgc
      241 tggatgcgaa agtcgagctc gacatcgccg gcgtcgagcg cgccgaccat cgccgcgcgc
      301 aggtagtcgt cgggcggccg gaacggcagg ttcggaaccg gcgtccgctt cgtggtcttc
      361 ggccagaccg agtactgcat cgcctggccg tcgccgagca ggtacggcac gcagctgaag
      421 tacggcgcct cgaacgggct gctctgggtc ttgatccaga gcgcctgcat gatgccgtcg
      481 agcaggtgcg ggcgatcgag gttgacgaag tagtagatcg acgtgttctt caggctctcc
      541 ttctgcagct gcgcgttggc gcgcacgtcg ggcgtgacga aggtcggcgg cgagacgccg
      601 aacatgtcct gcgtggactt ctcctcgtcc atcagcttcg cgccgggaac gcccatcagc
      661 ttgatgctga tgctcatgaa gccgacgtcg tcgatgtccg gcgtgatgta gggccccggg
      721 ccggagaagc ggacccaggc gcgataggtc ctgggctcgg cgaagatgcc gcgcctgagc
      781 tcggcgggca gcccgtcatg gacgatgaac tcggcgcgga cgatcccgtg cgtcttggtg
      841 ttgccgccgc gctcgaagcc gcccggcttc cagagcaggc gcatctgctc ctggaagctg
      901 gcgatgatcg agtcgacgaa ctcctcttcg cccgggagcg gcttctcctc ggcgatggcg
      961 agcttctcgt cgacgcgccc ggcgttgatc aggaacgtga cgaagcgggc gagcggatcg
     1021 cgcagcacgg cgtcgaacgc cggccggaag aacggatcga agcggcgctc gaggtggagc
     1081 agcgccagcg tcgtgtcggc gaggacgttg aggaacgtcg agcccgtgtt cgcgggcggg
     1141 accggtcgac tcgcgttcga attcatggcg gtcctcctca gtgggcagtg gcgagaaagc
     1201 gcagggcacg gatgccgggc aggaagaagt aggcgccgcc gaggacggtg acgaactgcg
     1261 gcaagccggc gaggcgctcg gcggcgccat cggcgcgcgg catcgagaag ccgtcggtcg
     1321 gcgtgccgtc ggccgcgggc aggcgcgtgc cgagcagcgg atcgctttcg ttcggcaggc
     1381 cgtcgaagtg cacgcccatc gcccacgcgt tctgcacgaa ctcgaactgg cgcgcgatgt
     1441 tggcgccgag gcagatgaag tgcaggcccg tctcgccggt ggcggccggc ccggcgagcg
     1501 cctgctcggg cgagacgccg acgccgtact cgcggccgcg gcgcagcagg cggtgaaacc
     1561 gcgtcgatgc gacgaggtcg tgggcgagcg cgtcggcatc gaagccgagc gttcgcttcg
     1621 cccacgagac gattcccggc gcgccaagcg gcaggtcggc gttgcgcgga ttgctgcgcc
     1681 gcacgtgcgc gccgagcggg cagcgcaggc cgtcggggtc ggagcgatag gtgaacgcgt
     1741 tgaggtcgcc gggagcgccg ccgccttcga tcgcttcatc ggccgggccg acgagcggga
     1801 cgccatcgcg cccgcgcccg accatggcgc cggcgatccg ctcgcgcagc ccggggttgc
     1861 caccggcgca gcggtcgacg aactgccaga agccgtgcac gtcctggcgc agctggcgca
     1921 tgaccaggta gctgccgttg cggccgaggt cggcgcgcgc cggatcgtcc tcggcgcgcg
     1981 gcagccgcgt tcccgcgagc gccggatcga gcagcggccg gtcggtgtag ccgccgtatt
     2041 cgttcggata gccgagcagg tattcgccga ggcagctcag gttcgagtat tcctcgcgct
     2101 cggcgtcgcg cgccggtcgc cggcgctccc agtcgagcag cggctgcgag atcccgtccg
     2161 tgaagccgaa cggctcgatg ccgtcgaggt cgctggtggc gaggccggcg agcatgtcga
     2221 agccgccttc gcactgcgcc tcgaccttgc gccggaagtc ggccagcttg ccgggcaggg
     2281 catagagcag caggagcacg tgcggcacgc ggccggcgcc gccccattgc cattggcccg
     2341 gatcgttcgc gccgacgtcg ccgagacggc gcgcacggtt cgcgtcgttg cccatgccgg
     2401 aaacgaagtc ggcggcgaag ccgtcgacga tggcgtcggc cacgccgagg gcgcgcaggc
     2461 cttcgccagt gaacgcgacc tgcaaggcag tctcgggcgg cggctcgatc gtctcggccg
     2521 tgcacaccgg caccgccgcg agccagcgcc gcgccgcgtc gcggtcgcgc acgcgcagga
     2581 gcaggaacga cgcctcggtg tgatgcttgt agccgaagcg gaccagtccc tggatgtcgc
     2641 cgagctcgac cgggagtgcg gtgctcatgg cagtcccttc gcgttgcacg cttcgatagt
     2701 cgccttgcgg gcggcgcggc ggctcatagc agccccagcc aggccagggc ctgggcatcg
     2761 ctcatcgtcg cttgctgcag gccttcgcgg atgcgatggt tgcgattgag ctcgaccagc
     2821 gcgagcccgg ggtaggcctt gtaccagacc tgcgtcggca cctggtggcg ccgctggtag
     2881 tacttgaact tctgctcgat gcgcgagccg ccgtggacga gccagcgcgt ccgcggccag
     2941 ccgaccccgt tgctgaacag caggttcagc ccccagccga ccttgttgat gaagtcgtcc
     3001 atgtagccct ggtggctgcc gtcgtagttg ctgacgaaga cgacgcgggt cttgtcgtcg
     3061 aagaagaacc agtgcgcgaa gtggatcgtc tgcacgcgtg cgaggtagcc gcgcgtgaag
     3121 atctggcggc aggcgaagct ggtcagcacc agcaggacgg tcaggagcca gcgtcggaac
     3181 aggcccggct tgacagcgcc gatcgcggtg tactggttcg tgatctcgcg atcctcgagc
     3241 tcctgcaacg cctcgaggtc ggcagggcgt ggccgcgggc agagctcggg gtcgctctcc
     3301 tcgcgcctgc gcaggaggaa gacgaagagc ggcgcgccga cgatcagcaa gggcagggcg
     3361 aggatgccga tcagcggcac ccccaccagg ttggcgagct tggcgagctg ccagccgaag
     3421 ggggtcggtg cgtccggcgt cagcgcgagc cggccggcat cgacctcgct cttgacccag
     3481 gcggcgagct cgcggcgcac gcgctcgccc tcgcccggcg cggccagtgg ccggcgcgga
     3541 acgcgcgccg cgagggcgcg ttgcagcgcg ctttcttcgc ggatctggcg cacgctgcgg
     3601 ccgacccagt tgacgaagct cgctgccgac ggctgctcgc gcgcgcgcat ccaggcgagc
     3661 agctcggtcg cgtcggtgaa gccttcgcag tgcgcgaaga tgcgcgccag ccccggccgg
     3721 gcgcgctcgg ccagatcggc gagcacatcg tcggccggcc cgtcgcagtc ggcgaggaag
     3781 acgaggcagg tcggcaggcg catcggttcg acgccatgca cccgcaggtc ggcctgcagg
     3841 gcgtcgtcga gcaggaccaa gcgggcgaag tggagacgat cgaactgcgc gaacggaacg
     3901 acgccgttgc gcggatcggc catcccgggc tcggtgttca tcgagtgcaa gagcgcgcgc
     3961 agggccggct ccttgccggc cgcgaccggc gcgaccacca ggaagtggtc ctgtggcgtc
     4021 atgactcaga acttcaggca gaagtcgatc agccgatcct tggcccagta caccttgccg
     4081 aggtagaagc ccgggccgat gaggcggatc tcgtcgcgca cgtagtgcgc cagcatcgat
     4141 gtctcggagt agtcgaggac gatgcactcc ttgttgtcga gccagcttgg cgtcttgtag
     4201 accctggcga cgatggcctc gaagccgaac gccagcaggc ggttcttgag cacgcccttc
     4261 tcggcatcga agaccttgcc ctgccagccg aaatgattga tgaccgtggc gatcggcatg
     4321 ctgtacttgg ttcccggggc gatgatcgcc gtgccctccg ccgaaccgct ggggatcggg
     4381 ccggcgggac tcgcgcggaa caggtcgtcg agc
//
LOCUS       DASVHM010000528         3297 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_181666, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000528 DASVHM010000000
VERSION     DASVHM010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3297
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181666"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VF308_09895"
     CDS             <1..192
                     /locus_tag="VF308_09895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437011.1"
                     /translation="AFEAVIIGGMGSFWGTLAGALLLGVTQQIGFRFDPGWGIWFGHI
                     VFLAVLVVRPQGLFPKTKG"
     gene            210..1253
                     /locus_tag="VF308_09900"
     CDS             210..1253
                     /locus_tag="VF308_09900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017522473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437012.1"
                     /translation="MTTQAVLEARGSSLAAAPFQVVRSTRASRVALAVGLALALIAAT
                     LPLWAPAEHASSWMREFVEIACYFIFAMMWNLLAGYGGMVSIGQQAFFGIGGYAMLAL
                     GNFAGINPFVAVPLGALAAGIIAVPVSFIAFRLAGGYFAIGTWVIADVFRLGVANISA
                     VGGGSGTSLTALRGIEKATRETATFWMALACMVAGVALVYLFLRSKRGLALLAIRDNE
                     VAAESQGIDVRGMKLAVYVVAAFGCGLAGALYFVGNLRISPDAAFSVNWTAFAIFMVV
                     IGGIGRIEGPIVGALIFWALNKFFSDYGTWYLLGLGLLAIVVTIFFKQGLWGWAQQRY
                     GWSLFPTQRRLQA"
     gene            1287..2159
                     /locus_tag="VF308_09905"
     CDS             1287..2159
                     /locus_tag="VF308_09905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intradiol ring-cleavage dioxygenase"
                     /protein_id="HEX7437013.1"
                     /translation="MRNITEHNITDAVVARFGGCADPRLKEVLTSLVRHLHGFVRETR
                     LTEAEWMQGIEFLTATGHMTDAKRQEFILLSDTLGVSMLTVAQNHSTPAGATEATVFG
                     PFHVADAPHFDNGADIGGGAPGEPLFVDCTIRGSDGAPIAGATVDVWQADQDGYYDVQ
                     YKGMEGHRARGVLHSDAQGRLRFRSILPVAYPVPTDGPVGQMLVASGRHPWRPAHVHF
                     MIEAPGYQTLITHVFRAGDPYLDSDVVFGVRASLISDFVAHAAGTGPHAKDIDGPYHT
                     LDFAFVLQREEGRP"
     gene            2156..2857
                     /locus_tag="VF308_09910"
     CDS             2156..2857
                     /locus_tag="VF308_09910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacid CoA-transferase subunit A"
                     /protein_id="HEX7437014.1"
                     /translation="MINKLFPSPAAALQGVRDGATVMIGGFGGAGQPNELIDALIEHG
                     ARDLTIVNNNAGNGETGLAALLKAGRVRKIICSFPRQVDSQVFDGLYRAGKLELELVP
                     QGNLAERIRAAGAGIGGFFTPTGYGTDLAKGKETREIDGRMYVFEAPIHADLALIKAE
                     RGDRWGNLTYRKTARNFGPIMAMAATLTVASVHEVVELGELDPEAIITPGIFVQRVVR
                     VPRTATGPAGFRRAA"
     gene            2867..>3297
                     /locus_tag="VF308_09915"
     CDS             2867..>3297
                     /locus_tag="VF308_09915"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018004753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HEX7437015.1"
                     /translation="MQKLTRDQMAARVARDIPEGAYVNLGIGLPTMVANHLPAAREIF
                     LHSENGLLGMGPAPPPGEEDYDLINAGKQPVTLLPGGAYFHHADSFAMMRGGHLDICV
                     LGAFQVSVRGDLANWHTGGADAIPAVGGAMDLAIGAKKVFVA"
BASE COUNT          501 a         1157 c         1109 g          530 t
ORIGIN      
        1 gcgttcgagg ccgtcatcat cggcggcatg ggttcgttct ggggcacgct cgccggcgcg
       61 ttgctgctcg gcgtgacgca gcagatcggc tttcgcttcg acccgggctg gggcatctgg
      121 ttcggccaca tcgtgtttct cgcggtgctc gtggtccggc cgcagggcct gtttccgaag
      181 acgaaggggt gaggaccgga gatgcccgag tgaccacgca agccgttctc gaggctcgag
      241 ggagcagcct cgccgcagcg cctttccagg tcgtgcgcag cacgcgcgcg agccgtgtgg
      301 cgctcgcggt gggcctcgct ctggcgctga tcgcggcgac cttgccgctc tgggcgccgg
      361 ccgagcacgc ctcgagctgg atgcgggaat tcgtcgagat cgcctgctac tttatcttcg
      421 cgatgatgtg gaacctgctc gccggctacg gcggcatggt ctcgatcggc cagcaggcgt
      481 tcttcggcat cggcggctac gcgatgctcg ccctcggcaa cttcgccggc atcaatccgt
      541 tcgtcgcggt gccgctcggc gcactcgccg ctggaatcat cgcggtgccg gtctcgttca
      601 tcgcgtttcg gctcgccggc ggctatttcg cgatcggaac ctgggtcatc gctgacgtgt
      661 ttcgcctcgg cgtcgccaac atctcggcgg tcggaggcgg ctccggcacc agcctgaccg
      721 cgctgcgcgg catcgagaag gcgacgcgcg agactgcgac cttctggatg gcgctcgcct
      781 gcatggtcgc gggggtcgcg ctggtctacc tgttcctgcg cagcaagcgc gggctggccc
      841 tgctcgcgat ccgcgacaac gaagtcgccg ccgaatcgca gggcatcgac gtgcgcggca
      901 tgaagctcgc ggtctacgtc gtcgcggcct tcggctgcgg gctggccggc gcgctctatt
      961 tcgtcggcaa cctgcgcatc agcccggacg cggccttcag cgtcaactgg accgccttcg
     1021 cgatcttcat ggtcgtgatc ggcggcatcg gccgcatcga agggccgatc gtcggcgccc
     1081 tgatcttctg ggcgctaaac aagttcttca gcgactacgg cacctggtac ctgctcggcc
     1141 tcggcctgct cgcgatcgtg gtcacgatct tcttcaagca ggggctctgg ggctgggccc
     1201 agcagcgtta cggctggagc ctgttcccga cccagcgcag actgcaggcc tgaatccctg
     1261 ccaaccccaa acgatcgatt tccgccatgc gcaacatcac cgaacacaac atcaccgacg
     1321 cagtcgtcgc ccgcttcgga ggctgcgcgg atccacgcct caaagaggtg ctgacgtcgc
     1381 tggtgcggca cctgcacggc ttcgtgcgcg agacccggct caccgaggcc gaatggatgc
     1441 agggcatcga attcctcacc gcgaccggcc acatgaccga cgcgaagcgc caggagttca
     1501 tccttctctc cgacacgctc ggcgtctcga tgctgacggt ggcgcagaac cacagcacgc
     1561 ccgccggcgc gaccgaggcg acggtattcg ggccgtttca cgtcgccgat gcgccgcact
     1621 tcgacaacgg cgccgacatc ggcggcggcg cgcccggcga gccgctgttc gtcgactgca
     1681 cgatccgcgg cagcgacggc gctccgatcg ccggcgcgac ggtcgacgtc tggcaggccg
     1741 accaggacgg ctactacgac gtccagtaca agggcatgga agggcaccgc gcccgtggcg
     1801 tgctgcacag cgacgcgcag gggcgattgc gcttccgcag catcctcccg gtggcctatc
     1861 cggtgcccac cgacgggccg gtcggccaga tgctggtcgc gagcggccgc cacccgtggc
     1921 gtccggcgca cgtccatttc atgatcgagg cgcccggcta ccagaccctg atcacgcacg
     1981 tgttccgggc cggcgacccg tatctcgaca gcgacgtggt gttcggcgtg cgcgcctcgc
     2041 tgatcagcga cttcgtcgcc cacgcggccg gcaccggccc gcacgcaaaa gacatcgacg
     2101 gcccgtacca cacgctggac ttcgccttcg tgctgcaacg cgaggaagga cggccttgat
     2161 caacaagctc tttccttcgc ccgccgcggc cctgcagggc gtgcgcgacg gcgcgaccgt
     2221 gatgatcggc ggcttcggcg gcgcggggca accgaacgaa ctgattgacg cgctgatcga
     2281 gcacggcgcg cgcgacctca cgatcgtcaa caacaacgcc ggcaacggcg agaccggcct
     2341 cgcggcgctg ctgaaggcag ggcgcgtgag gaagatcatc tgctcgtttc cgcgccaggt
     2401 cgattcgcag gtcttcgacg gcctctaccg cgccggcaag ctcgaactcg aactggttcc
     2461 gcaaggtaac ctcgccgagc gcatccgcgc cgcgggcgcc ggcatcggcg gcttcttcac
     2521 gccgaccggc tacgggaccg acctggccaa gggcaaggag acacgcgaga tcgacggccg
     2581 catgtacgtg ttcgaggcgc cgatccacgc cgacctggcg ctgatcaagg ccgagcgcgg
     2641 cgaccgctgg ggcaatctca cctaccgcaa gaccgcgcgc aacttcggcc cgatcatggc
     2701 gatggcggcc acgctcacgg tcgcgtcggt gcacgaggtc gtcgaactcg gcgagctcga
     2761 ccccgaggcg atcatcacgc ccggcatctt cgtgcagcgg gtggtgcggg tgccgcgcac
     2821 ggcgaccggc ccggccggct tcaggcgggc ggcctgagag acggacatgc aaaaactcac
     2881 ccgcgaccag atggcggcgc gcgtcgcccg cgacatcccc gaaggcgcct acgtgaacct
     2941 cggcatcggg ctgcccacga tggtcgcgaa ccacctgcct gcggcgcgcg agatcttcct
     3001 gcacagcgag aacggcctgc tcggcatggg gccggcgccg ccacccggcg aggaagacta
     3061 tgacctgatc aacgccggca agcagccggt gacgctgctg ccgggcggcg cctatttcca
     3121 ccacgccgat tcgttcgcga tgatgcgcgg cggccacctc gacatctgcg tgctcggcgc
     3181 gttccaggtc tcggtgcgcg gtgacctcgc caactggcac actggcggcg ccgacgcgat
     3241 tccggcagtc ggcggggcga tggacctggc gatcggggcc aagaaggtat tcgtggc
//
LOCUS       DASVHM010000529         2458 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_687901, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000529 DASVHM010000000
VERSION     DASVHM010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_687901"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..691
                     /locus_tag="VF308_09920"
     CDS             <1..691
                     /locus_tag="VF308_09920"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEX7437016.1"
                     /translation="RALVLPEADGPREGRVGAPVGRALRLLIAGDSSAAGVGVAHQRH
                     AVAGYLVRSLHKALGTPIEWSLRARSGLTTRQLHELLRAEPPGPADVAVVVTGVNDVI
                     DQVSSRRAVRQREALADWLLERQGARHVLFAPLPPIGRFPLLPQPLRRVMGADARRHD
                     EALAHWAAGRENVSHIGIDLDLSADVMAEDGFHPGEPVYRLCGEALARHIADGVWPRL
                     IARQGGKVRRA"
     gene            717..1547
                     /locus_tag="VF308_09925"
     CDS             717..1547
                     /locus_tag="VF308_09925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7437017.1"
                     /translation="MNLQGKTLFITGASRGIGLAIARRAARDGANVAIAAKTTEVHPK
                     LPGTIFSAAEEVEAAGGHALALQCDIREEASVHEAVAKTVERFGGIDILVNNASAISL
                     TPTLGTPMKRFDLMFGVNVRGTYLCTQVCLPHLIKSAQAGRNPHVLTMSPPLSMKPHW
                     FEHHTAYTMAKYGMSMCTLGHAAEFKPNGIAVNSLWPRTAISTAALQMIPGVDLARCR
                     TPEILADAAYLILTSDAKTTSGNFFIDDALLAAHGITDLDRYSVTPGTTDFIADFFVD
                     "
     gene            complement(1584..2009)
                     /locus_tag="VF308_09930"
     CDS             complement(1584..2009)
                     /locus_tag="VF308_09930"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEX7437018.1"
                     /translation="MPEISSTSPEKVAPLQLPNDRQLVMRVMPMPADANGNGDIFGGW
                     IMAQVDLAGAVIPARIAKGRIATVAVNQFVFKQPVSMGDLLSFYAKVTRIGKTSVTVN
                     VEVFAERNPADLHVVKVTEANLTYVAIDRDGRPRPIPQG"
     gene            2077..>2458
                     /locus_tag="VF308_09935"
     CDS             2077..>2458
                     /locus_tag="VF308_09935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007877954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEX7437019.1"
                     /translation="MRRETLSSPPPAGTSKPHGSDWKTLRKLVPYVWEWRWRVLVALC
                     FLVAAKLANIGVPLVLKTLVDSLTLKPGDPRLALVVPVGLLLAYGALRLSITLFTELR
                     EFLFYPVAARIARRVSLDAFDHLLS"
BASE COUNT          368 a          856 c          820 g          414 t
ORIGIN      
        1 ccgcgcgctg gtactgcccg aggccgacgg gccgcgcgaa gggcgcgtcg gcgcgcccgt
       61 cggtcgggcg ttgcgactcc tgatcgcggg cgattcgtcg gcggccggcg tcggcgtcgc
      121 gcatcagcgc catgcggtcg cgggctacct ggtgcgcagc ctccacaagg ctctcggcac
      181 gccgatcgag tggtcgttgc gggctcgttc cggcctcacg acccggcagc tgcacgagtt
      241 gctgcgtgcg gagccgcccg ggcccgccga cgtggcggtg gtcgtgactg gcgtcaacga
      301 cgtcatcgac caggtctcgt cgcggcgcgc cgtgcggcaa cgcgaggcgc tcgccgattg
      361 gctgctcgag cggcagggcg cgcgccatgt gctgttcgcg ccgctgccgc cgatcgggcg
      421 ctttcccttg ctgcctcagc cgctgcgccg ggtcatgggg gcggacgccc ggcgccacga
      481 cgaggctctg gcgcattggg cggcggggcg cgagaatgtc tcccacatcg ggatcgacct
      541 cgacctgagc gccgatgtga tggccgaaga cggctttcat ccgggcgagc cggtgtaccg
      601 cctctgcggc gaggccctgg cccggcacat cgctgacggg gtgtggccac gattgatcgc
      661 gcgccaaggc ggcaaggtcc gccgcgccta aaaagaacga ccgagggaga cgcttgatga
      721 acctgcaagg caagacgctt ttcatcacgg gcgcttcgcg cggcatcggc ctcgcgatcg
      781 cccggcgcgc cgcgcgcgac ggcgcaaacg tcgcgatcgc cgcgaagacg accgaggtgc
      841 atccgaagct gcccggcacg atcttcagcg ccgccgagga agtcgaggcc gccggcggcc
      901 acgcgctcgc gctgcagtgc gacatccgcg aggaagcgag cgtgcacgag gcggtggcga
      961 agaccgtcga gcgcttcggc ggcatcgaca tcctcgtcaa caacgcgagt gcgatcagcc
     1021 tcacgccgac gctcgggacg ccgatgaagc gtttcgacct gatgttcggc gtcaacgtgc
     1081 gtggcaccta cctgtgcacg caggtctgcc tgccgcacct gatcaagtcc gcgcaggccg
     1141 gccgcaatcc gcacgtgctg acgatgtcgc caccgctgtc gatgaagccg cactggttcg
     1201 agcaccacac tgcgtacacg atggccaagt acggcatgag catgtgcacg ctcggccatg
     1261 cggccgaatt caagccgaac ggcatcgccg tcaacagcct gtggccgcgc accgcgatct
     1321 cgaccgcggc actgcagatg atccccggcg tcgacctcgc ccgctgccgc acgccggaga
     1381 tcctggccga cgccgcctat ctgatcctga ccagcgacgc gaagacgacg agcggcaact
     1441 tcttcatcga cgacgcactg ctggcggccc acggcatcac cgacctcgac cgctacagcg
     1501 ttacgccggg aacgacggat ttcatcgcgg atttcttcgt cgactgagag tggccggagc
     1561 cgccccgatg gtgacggctc gcgctagccc tgcggaatcg gtcggggccg gccgtcgcgg
     1621 tcgatggcga cgtaggtcag gttggcttcg gtcaccttca cgacatgcag gtcggcggga
     1681 tttcgctccg cgaagacttc gacgttcacg gtgaccgatg tcttgccgat gcgcgtgacc
     1741 ttggcgtaga agctgagcag atcgcccatc gagaccggtt gcttgaagac gaactggttc
     1801 acggcgacgg tggcgatgcg gcctttcgcg atgcgcgctg ggatcaccgc gccggccaga
     1861 tcgacctggg ccatgatcca gccgccgaaa atgtcgccgt tgccgttcgc gtcggccggc
     1921 atcggcatca cacgcatgac cagttgtcga tcgttcggca attgaagcgg cgcgaccttt
     1981 tcagggctgg tgcttgaaat ctcgggcata ttgcttcacg tgagaaggtc gagcgttcga
     2041 ttcttccacc tttcgccttt cccccagcac cctccgatgc gccgcgagac cctttcttcc
     2101 cctccgcccg ccggcacgtc gaagccgcac ggatccgact ggaagacgct caggaagctc
     2161 gtgccctacg tgtgggagtg gcgctggcgc gtgctggtgg cgctctgctt cctggtcgcg
     2221 gccaagctcg ccaatatcgg cgtgccgcta gtcctgaaga cgctcgtcga ctcgctcacg
     2281 ctcaagcccg gcgacccgcg cctcgcgctc gttgtgccgg tcggcctgct gctcgcctac
     2341 ggcgcgttgc gcctgtcgat cacgctcttc accgagttgc gcgagttcct gttctacccg
     2401 gtcgccgcgc gcatcgcgcg gcgcgtgtcg ctcgatgcct tcgaccacct cctcagcc
//
LOCUS       DASVHM010000530         5431 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_542875, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000530 DASVHM010000000
VERSION     DASVHM010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5431
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_542875"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            85..2268
                     /locus_tag="VF308_09940"
     CDS             85..2268
                     /locus_tag="VF308_09940"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011872655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019829 - ATPase-coupled monoatomic cation
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEX7437020.1"
                     /translation="MVEETTLRIEGVTCASCSGRVEKALLKVPGVSGASVNLATERAT
                     VQASPGVAVSTLEAAVAKAGYVAKDVRSGERAPRRWPEWGPVAVSAVLTVPLLAPMLL
                     APFGIDWMLGGWVQLALATPVQFWLGGRFYRAGYKAVRAGAGNMDLLVALGTSAAYGL
                     SVYLLFAVAPHGMSHLYFEASAAVITLVLLGKWLEGKAKRETADAIRALNALRPLSAR
                     VRRAGVEMDMPVEQVVVGDVVLVRPGERVPVDGQVTEGRSHVDESLITGESLPVAKSP
                     GDKVTGGAINAEGALTVSTLAVGAETTLARIVRMVESAQAGKAPIQRIVDRVSAVFVP
                     VVLGLAALTFVGWVAFTGDWERALIDAVAVLVIACPCALGLATPTAIIAGTGVAATHG
                     ILIKDAEALEIARSVTTVAFDKTGTLTEGRPTLVSIDAAPGHGVGEVLRMSAALQRSS
                     DHPLALAVLQKARAEGLVLPAADAAKALPGRGVEATVEGQSLALGSARLLQEFGVDAT
                     PLAAAAQALEGAGRTVAWLVRTDAAKPELLGLLGFGDAVKPTARLAIARLRALGIATM
                     MLTGDNPGSAQAVARELGIDQFRAGVLPADKAAVLQELRAQGQVVAMVGDGINDAPAL
                     AAADVGIAMSTGTDVAMAAAGITLMHGDPGRVADAIDISRRTYAKIRQNLGWAFAYNV
                     LGIPLAAFGLLSPVIAGAAMAASSVSVVSNALWLRRWRPAPVDAQ"
     gene            complement(2262..3320)
                     /locus_tag="VF308_09945"
     CDS             complement(2262..3320)
                     /locus_tag="VF308_09945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013206815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7437021.1"
                     /translation="MRIHPATAAIAAALLFGASTPLAKLLVGAMPPLLLAGLLYLSSG
                     VGLGALLLVRRALRRTPSGESGPWSIPRRDAPSLLGAIVAGGIAGPALLMTGLAQTDA
                     ASASLLLNLEGVFTALIAWLVFHENTDRRIVAGMIAIVAGGVLLSWQPSGAAAAPGAL
                     LIAAACLCWAVDNNLTRKVSSHDAMLVAGCKGLVAGLCNTGLALVSGAALPSAGVIGW
                     ALLVGFVGYGVSLALFVVALRTLGTSRAAAYFSIAPLFGVMLAFALWPEAPGAAFWAA
                     AALMALGLGLHLRERHGHAHAHLPLAHSHSHAHDAHHRHEHDFAWDGHEPHVHPHAHA
                     ALTHVHAHYPDIHHRHPH"
     gene            3380..4717
                     /gene="chrA"
                     /locus_tag="VF308_09950"
     CDS             3380..4717
                     /gene="chrA"
                     /locus_tag="VF308_09950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013339507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate efflux transporter"
                     /protein_id="HEX7437022.1"
                     /translation="MSDDTARPIAPTFGQACAYWLKLGFMSFGGPAGQIALMHQELVE
                     RRRWISEGRFLHALNYCMVLPGPEAQQLATYIGWLMHRTRGGLIAGGLFVLPSLFILI
                     ALSWVYMAFGQVPVVAGLLYGIKPAVTAIVIHAAYRIGSRALKNAWLWAIAVAAFVAI
                     FAFGAPFPFIVLAAGVAGYVGGRMAPAKFSAGGGHGPGRKPLGPAWIDDASPTPEHAL
                     FTWGRVRRVVMVCVGLWAVAIAGLALAFGWDAVLIQMAWFFTKAALLTFGGAYAVLPY
                     VFQGAVEHHQWLTPSQMIDGLALGETTPGPLIMVVSFVGFVGGWTKAVLGTDALFLSG
                     AVAATVVTFFTFLPSFFFIFLGAPFIESTHGDLRFTAPLTGITAAVVGVIVNLAVFFA
                     VHVLWPAGLAGRFDWTSAAIGVLAGIALFRFKAGVIPVILGAGLLGLGSRLMG"
     gene            4840..5088
                     /locus_tag="VF308_09955"
     CDS             4840..5088
                     /locus_tag="VF308_09955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437023.1"
                     /translation="MSPYSRTRFWTEAVAALVSATVFLLTLVEPHWFEVLFDEAPDGG
                     DGSLEGWIALACFLAATILFARLASLERRRRPSPRSSA"
     gene            complement(5126..>5431)
                     /locus_tag="VF308_09960"
     CDS             complement(5126..>5431)
                     /locus_tag="VF308_09960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437024.1"
                     /translation="FGGFVKENIWVTKDGGQTWALLGSALPAAPVNAIAIHPRRTTFV
                     YVGTEVGAFASEDGGAHWSPTNEGPANVAIDDLFWMGETLVCASHGRGMYTIDLHTV"
BASE COUNT          745 a         1884 c         1947 g          855 t
ORIGIN      
        1 agtggccgca agtcatgtcg ttcacctgga aggcaatcat cgtgaatcct tggggaaaag
       61 atagcgcgag catactgtcc cgcgatggtt gaagaaacaa cgctgcgcat cgaaggagtg
      121 acctgcgcct cgtgctcggg ccgggtcgag aaggcactgc tgaaggtccc gggcgtcagc
      181 ggcgcatcgg tcaacctggc gaccgagcgc gccaccgtgc aggcttcgcc cggggttgcc
      241 gtgtcgacgc tcgaagcggc ggtggcgaag gccggctacg tcgcgaagga cgtgcgcagc
      301 ggcgaacgcg cgccgcgccg ctggccggag tggggcccgg tcgcggtgag cgccgtgctg
      361 acggttccgc tgctcgcgcc gatgctgctc gcgcctttcg gcatcgactg gatgctcggc
      421 ggctgggtcc agctcgcgct cgccacgccg gtgcagttct ggctcggcgg gcgcttctat
      481 cgcgccggct acaaggccgt gcgcgccggc gccggcaaca tggacctgct cgtcgccctc
      541 ggcacttccg ccgcctacgg cctttcggtg tacctgctct tcgcggtcgc gccgcacggc
      601 atgtcgcacc tctacttcga ggcctcggcc gcggtcatca cgctggtgct gctcggcaag
      661 tggctcgagg gcaaggccaa gcgcgagacg gccgacgcga ttcgcgccct caacgccttg
      721 cgcccgctca gcgcgcgcgt ccgccgtgcc ggggtcgaga tggacatgcc cgtcgaacag
      781 gtcgtcgtcg gcgatgtcgt cctggtccgc cccggcgagc gcgtgccggt cgacgggcaa
      841 gtgaccgaag gccgcagcca tgtcgacgaa tcgctcatca ccggcgagag cctgccggtc
      901 gcgaaatcgc ccggcgacaa ggttaccggc ggtgccatca acgccgaggg cgcgctcacc
      961 gtgagcacgc tcgcggtcgg tgccgagacc acgctcgccc gcatcgtccg catggtcgaa
     1021 tcggcgcagg ccggcaaggc cccgatccag cgcatcgtcg accgggtcag cgcggtgttc
     1081 gtgcctgtgg tgctgggcct ggccgcactg accttcgtcg gctgggtcgc cttcacgggc
     1141 gactgggagc gtgccctcat cgatgcggtg gcggtgctgg tgatcgcgtg cccgtgcgcg
     1201 ctcggcctgg cgacgccgac ggccatcatc gccggcaccg gcgtcgccgc cacgcacggc
     1261 atcctcatca aggacgcgga ggcgctcgag atcgcgcgtt cggtgacgac agtcgccttc
     1321 gacaagaccg gcaccctgac cgagggccgg ccgacgttgg tcagcatcga cgccgcgccc
     1381 ggccatggcg tcggcgaggt gctgcgcatg tccgccgcgc tccagcgcag cagcgatcat
     1441 ccgctggcgc ttgcggtgct gcagaaggcg cgcgcggagg gactcgtgct gcccgcggcc
     1501 gatgcggcga aggccttacc gggacgcggc gtcgaggcga cggtggaagg ccagtccctg
     1561 gcgctcggca gcgcacgcct tctgcaggag ttcggcgtcg acgccacgcc gctcgccgcc
     1621 gcggcgcagg cactcgaagg cgcgggccgc accgtggcgt ggctggtccg caccgatgcc
     1681 gcgaagcccg aattgctggg cctgctcggg ttcggcgacg ccgtcaagcc gacggcgcgc
     1741 ctggccatcg cccggcttcg cgcgctcggc atcgcgacca tgatgctgac cggcgacaac
     1801 ccgggcagcg cgcaggcggt tgcgcgcgag ctcggcatcg accagtttcg cgccggcgtg
     1861 ttgcctgccg ataaggcggc cgtgctgcag gaactgcgcg cgcagggaca ggtcgtggcg
     1921 atggtcggcg acggcatcaa cgacgcgccc gctctggccg ccgccgatgt cggcatcgca
     1981 atgtcgaccg gcaccgacgt cgcgatggcc gccgccggca tcacgctgat gcacggcgac
     2041 cccggccggg tggcggacgc catcgacatc tcgcgccgaa cctacgccaa gatccggcag
     2101 aacctgggct gggccttcgc ctacaacgtc ctcggcattc cgctcgccgc gttcgggctg
     2161 ctcagcccgg tgatcgccgg cgcggcgatg gcggcgagca gcgtcagcgt ggtgagcaac
     2221 gcgctgtggc tgcgccgctg gcggcccgcg cccgtcgacg ctcagtgagg atgccggtga
     2281 tggatgtcgg ggtagtgcgc atgcacgtgc gtcagcgccg cgtgcgcgtg cggatggaca
     2341 tgcggctcgt ggccatccca cgcgaaatcg tgttcgtgcc ggtggtgcgc gtcgtgcgca
     2401 tggctgtggc tgtgcgccag gggcaggtgc gcgtgtgcgt ggccatggcg ctcgcgcaga
     2461 tgcagcccga ggcccagcgc catcagcgcg gcggcggccc agaacgccgc gcccggcgct
     2521 tcgggccaga gcgcgaaggc cagcatcacc ccgaacagcg gcgcgatcga gaagtaggcg
     2581 gcggcgcgcg atgtgccgag cgtgcgcaac gcgacgacga agagcgcgag gctaacgccg
     2641 tagccgacga agccgaccag cagcgcccat ccgatcacgc cggctgaagg cagcgcggcg
     2701 ccgctcacga gggcaaggcc cgtattgcag aggccggcga cgaggccctt gcagcccgcc
     2761 acgagcatcg catcgtggct cgagactttg cgcgtcaggt tattgtcgac ggcccagcac
     2821 aggcacgccg ccgcgatgag cagcgcgccc ggcgcggcgg ccgcgccgct cggctgccac
     2881 gagagcaaca cgccgcccgc gacgatggcg atcatgccgg caacgatgcg ccggtccgtg
     2941 ttctcgtgga acaccagcca ggcgatgagc gcggtgaaca cgccctcgag gttgagcagc
     3001 agcgaggccg atgcggcgtc cgtttgcgcg agccccgtca tcagcaacgc cggcccggcg
     3061 atgccgccgg cgacgatggc gccgagcagc gacggcgcat cgcggcgcgg gatcgaccac
     3121 ggcccggatt caccggacgg tgtgcggcgc agcgcgcgtc gcaccaggag cagcgccccg
     3181 aggccgacgc cgctgctgag gtagagcagg ccggcgagca acagcggcgg catcgcgccg
     3241 acgaggagct tggcgagcgg cgtgctggcg ccgaacagca gggcggcggc gatcgcggcg
     3301 gtggcggggt ggattcgcat cgatcccatt gtgagcatgc cccgagcgcg agagcaacgc
     3361 acaatccgtc cacgcaacca tgagcgacga caccgcccgg ccgatcgcgc cgacgttcgg
     3421 ccaggcctgc gcctactggc tcaagctcgg cttcatgagc ttcggcgggc ccgccgggca
     3481 gatcgcgctg atgcaccagg agctcgtgga acggcgccgc tggatctcgg aaggccggtt
     3541 cctccacgcc ctgaactact gcatggtcct gcccgggccc gaagcgcaac agctcgcgac
     3601 ctacatcggc tggctgatgc accgcacccg gggcggcctc atcgccggtg gcctcttcgt
     3661 gctgccgtcg ctcttcatcc tgatcgcgct gtcgtgggtg tacatggcgt tcggccaggt
     3721 gcccgtggtg gccgggctgc tctacggcat caagcctgcg gtgacggcca tcgtcattca
     3781 tgccgcctat cgcatcggct cgcgggcctt gaagaatgcg tggctgtggg ccatcgccgt
     3841 cgcggcgttc gtggcgatct tcgcgttcgg ggcgccgttt ccgttcatcg tcctcgcggc
     3901 aggcgtcgcc ggctacgtcg gcggccggat ggcgccggcg aagttcagcg cgggcggcgg
     3961 gcatggcccc ggccgcaaac cgctcggccc cgcctggatc gacgatgcga gcccgacgcc
     4021 ggaacatgcg ctcttcacct ggggacgcgt gcggcgtgtg gtgatggtct gcgtgggcct
     4081 gtgggccgtt gccatcgccg gcctggcgct ggccttcggg tgggacgcgg tgctcatcca
     4141 gatggcatgg ttcttcacga aggccgcgtt gctgaccttc ggcggcgcct acgccgtgct
     4201 gccctacgtc ttccagggcg cggtcgagca ccaccaatgg ctgacgccat cgcaaatgat
     4261 cgacggactc gcgctcggcg aaacgacgcc cgggccgctc atcatggtgg tgtcgttcgt
     4321 cggcttcgtc ggtggctgga ccaaggcggt gctcggcacc gatgcgttgt tcctgtccgg
     4381 tgcggtggcc gcgacggtcg tcacgttctt caccttcctg ccgtcgttct tcttcatttt
     4441 cctgggcgca ccgttcatcg agtcgactca cggcgacctc aggttcacgg cgccgctcac
     4501 cggcatcacg gctgccgtgg tcggcgtcat cgtcaacctc gccgtcttct tcgcggtgca
     4561 cgtgctctgg cccgcggggc tcgcgggccg attcgactgg acctcggcgg cgatcggcgt
     4621 gcttgcgggc atcgcgctct tccggttcaa agcgggcgtc attccagtga tcctcggcgc
     4681 cggcctcttg gggctcggct cgcggctcat gggttgaatc gcccggcgaa tcagccacgt
     4741 tctgatggtc gcgtatcggg gcccatctag cgctcgcccc agggttgacg ctgcgcccga
     4801 tagggtgaga gtattcctct gcacagtccc ggaggcacga tgtcccctta cagccgaacc
     4861 cgtttctgga ccgaggcggt ggcggcgctg gtcagcgcca ccgtcttcct gctcacgctc
     4921 gtcgaaccgc attggttcga ggtgctcttc gacgaggctc ccgacggcgg agacggaagt
     4981 ctcgagggct ggatcgccct ggcctgcttt cttgcggcga cgatcctgtt cgcccgcctg
     5041 gcgagtctcg agcggcgtcg caggccgagc ccgcgctcgt cggcgtgacc cggccgaggc
     5101 accgagccgg tgccggcccg aggcctcaga cggtgtgcag gtcgatcgtg tacatgcccc
     5161 ggccgtggct ggcgcagacc agtgtctcgc ccatccagaa caggtcatcg atcgcgacgt
     5221 tggcaggccc ttcgttggtg ggcgaccagt gcgcgccgcc gtcttcgctg gcgaacgcgc
     5281 cgacctcggt gcccacgtag acgaaggtcg tgcggcgcgg gtggatggcg atggcgttga
     5341 ccggtgccgc aggcagggct gagccgagca gcgcccatgt ctggccgcca tccttggtga
     5401 cccagatgtt ctccttcacg aagccgccga a
//
LOCUS       DASVHM010000531         2143 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_761188, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000531 DASVHM010000000
VERSION     DASVHM010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_761188"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..743)
                     /locus_tag="VF308_09965"
     CDS             complement(<1..743)
                     /locus_tag="VF308_09965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-hydroxylase N-terminal
                     domain-containing protein"
                     /protein_id="HEX7437025.1"
                     /translation="MLLSASNYRESLRRYHPRVYVNGRQVESVADEPSLAPGVNAVAL
                     TYDIALREQFKPVMRAAVPALGALEVNRMMAIPSSSQDLLNKLEAVRLVCQETGCAQR
                     YLGGDALSAIWQSAHRIDAERKTEYVARVRAYIERVYAGDLTLGVAMTDARGDRSKRP
                     YRQPNPDAYLHIAERRADGVVLSGVKAIVTGAPYMHELLVMPGRNMREHDADFAVCCA
                     LPVDAPGLTIVARPAGRPGEKAAKFSGRYG"
     gene            complement(761..1993)
                     /locus_tag="VF308_09970"
     CDS             complement(761..1993)
                     /locus_tag="VF308_09970"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015038825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX7437026.1"
                     /translation="MTFAAAQASPPGPLVGMRVLDCATFIAGPYCATFLAEFGAEVVK
                     IEQPGPGDPTRKFGTPTPCGDSLVWLSEGRNKKSLTINLKSPEGAALLKRLVEKADVL
                     VENFQPGTLEGWGLGWEELKRHNPRLVMVRISAYGQTGPYSPRPGFGRIANAFGGISF
                     LAGYPDRPPVTPGSATLPDYLSGMYGAMGALVALRAREQSGAGQVVDIGLYESVFRIL
                     DELAPAYHYKGLVRQRMGPGTVNTVPHSHYPSHDGRWLAIACTSDKIFARLAVLMGCP
                     EFAGSGKWGTIVQREADRAAVDAFVGEWTGRHTREEVLALCSAGEVPCGPLYAIDEIF
                     ADPHYKARDNIAFVNEPRIPGGQEFAVPNVMPRLTETPGRINWLGPALGAHTEEVLKD
                     WIGLEAAEIAALRSAGAI"
     gene            complement(1990..>2143)
                     /locus_tag="VF308_09975"
     CDS             complement(1990..>2143)
                     /locus_tag="VF308_09975"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005019767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7437027.1"
                     /translation="AMRIHGAYGYSTEFNIERYFRDSPLLLIGEGTNEMQRIIIARQL
                     IERNPA"
BASE COUNT          319 a          708 c          760 g          356 t
ORIGIN      
        1 ccgtagcgcc cgctgaactt ggcggccttc tcgccgggcc ggccggccgg gcgggcgacg
       61 atcgtcaggc ccggtgcatc gacgggaagc gcgcagcaca cggcgaagtc ggcgtcgtgc
      121 tcgcgcatgt tgcggcccgg catcacgagc agttcgtgca tgtagggtgc gccggtcacg
      181 atcgccttca cgcccgacag caccacgcca tcggcccgcc gctccgcgat gtgcaggtag
      241 gcgtccgggt tcggctgtcg ataggggcgc ttgctgcggt cgccccgggc gtcggtcatc
      301 gccacgccga gcgtcaggtc gccggcatag acacgctcga tgtaggcgcg aacccgcgcc
      361 acgtattcgg tcttgcgttc ggcatcgatc cggtgcgccg actgccagat cgccgaaagc
      421 gcgtcgccgc cgaggtagcg ctgcgcgcag cccgtctcct ggcagaccag gcgcacggcc
      481 tcgagcttgt tgaggaggtc ctggctgctg gatggaatgg ccatcatccg gttgacctcg
      541 agcgcgccca gcgcgggcac tgccgcgcgc atgaccggct tgaactgctc gcgcagcgcg
      601 atgtcgtagg tcagcgccac ggcgttgacc ccgggcgcga gcgagggctc gtcggccacc
      661 gattcgacct gccggccgtt cacgtagacg cgcgggtggt agcgccgcag cgattcacgg
      721 tagttgcttg cggacaagag cacggtgtgt tcctttgcgg tcagatggcg ccggcgctcc
      781 tgagcgctgc gatctcggcc gcttcgaggc cgatccagtc cttgagcact tcctcggtat
      841 gagcgccgag cgcgggcccc agccagttga ttcggccggg cgtttcggtg agccgcggca
      901 tcacgttggg gacggcgaat tcctggccgc cgggaatgcg cggctcgttc acgaacgcga
      961 tgttgtcgcg ggccttgtag tgcggatcgg cgaagatctc gtcaatcgcg tacagcggcc
     1021 cgcacggcac ttcgccggca ctgcacagcg cgagcacttc ttcgcgcgtg tgccggccgg
     1081 tccactcgcc gacgaaggcg tcgacggcgg cgcggtccgc ctcgcgctgg acgatcgttc
     1141 cccacttgcc gctgcccgcg aattcggggc agcccatcaa cacggccagg cgcgcgaaga
     1201 tcttgtcgct cgtgcacgcg atcgcgagcc agcgcccgtc gtgcgagggg tagtggctgt
     1261 gcggcacggt gttgaccgtc cccggcccca tgcgctggcg caccaggccc ttgtagtggt
     1321 aagcgggcgc gagctcgtcg agaatcctga agaccgattc gtagagcccg atgtcgacga
     1381 cctggcccgc gccggactgc tcgcgcgcgc gcagtgccac gagggcgccc atcgcgccgt
     1441 acatccccga caggtagtcg ggcaaggtgg cagagcccgg cgtcaccggc ggacgatcgg
     1501 gatagccggc aagaaacgag atgccgccga acgcgttggc gatgcgcccg aaacccgggc
     1561 gcgggctgta ggggccggtc tgcccatagg cggagatgcg caccatgacc aggcgcggat
     1621 tgtgtcgctt cagctcctcc cagcccaggc cccagccttc gagcgtgccg ggctggaaat
     1681 tctcgaccag cacatcggcc ttttcgacga ggcgcttcag gagcgccgcg ccttcggggc
     1741 tcttgaggtt gatggtgagc gacttcttgt tgcggccctc ggacaaccac accagggaat
     1801 ccccgcaggg cgtgggcgta ccgaacttgc gcgtcggatc gccaggaccg ggctgttcga
     1861 tcttcaccac ttcggcgccg aactcggcga gaaatgtcgc gcagtacggg ccggcgatga
     1921 aggtggcgca gtcgagcacg cgcatgccca cgagcgggcc gggaggcgag gcttgcgcgg
     1981 cggcaaacgt catgcgggat ttctttcgat gagctgtcgg gcgatgatga tgcgctgcat
     2041 ctcgttggtg ccttcgccga tcaggagcag tggggagtcg cggaagtagc gctcgatgtt
     2101 gaactccgtc gagtagccgt aggcgccgtg tatgcgcatc gcc
//
LOCUS       DASVHM010000532         2011 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1048781, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000532 DASVHM010000000
VERSION     DASVHM010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1048781"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VF308_09980"
     CDS             <1..282
                     /locus_tag="VF308_09980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019425265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEX7437028.1"
                     /translation="VLLKPNQRGTLSETRAAWDAAREAGYAGIVSARSGETEDTTIVH
                     LAVGWGTGQLKVGSFARGERMAKWNEALRIEERLSTRATLARPLPRRTR"
     gene            305..1120
                     /locus_tag="VF308_09985"
     CDS             305..1120
                     /locus_tag="VF308_09985"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437029.1"
                     /translation="MSELPTTDTKAASEAGLGPRLRAAFVYYLPSVVVMLALLVVWQL
                     GVQWLGVKEYILPTPLAALRTLADPNYRWTANFLATLYSVLGAFALSAVLGVLLAIVV
                     VWNDLLMRTVMPVLILFNTLPKIALAPLFVVWLGYGIWPNIVIGTTIAFFPMVVNTAV
                     GLASAEPEMLELVKTLRASRWKVLTKIRFPNAVPYIFVGLKLAATMSVIGALVGEFVA
                     SERGLGSLIITGGVTMQTASIFASLTLISVLGLVLYGLVVAIEHIVAPWAHRA"
     gene            1155..>2011
                     /locus_tag="VF308_09990"
     CDS             1155..>2011
                     /locus_tag="VF308_09990"
                     /inference="COORDINATES: protein motif:HMM:NF024772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437030.1"
                     /translation="MKTSTPGTPRAHWPRALAAGIAVLAALPAAAEDKVQLQLNWFHL
                     ADHSPIYLAMKKGYYKEEGIDLTVLRGSGSSDSAKKIDLGQSDIGISDAPTVLTAISK
                     GANLKMVAVVYDKAGNNVFFKKSANIKSPKDLAGKKIAVPPADSHRVLWPAFAATQGI
                     DANSVTMVNVKPEGKQAIVAAGEVDAAFDLYTSFAIWEKVLGKGEVGHLLWADYGLPI
                     YGHTYFVNNDLVKKNPKLIERFLRATHKGWRDAKANPAASIDAMVEQVPGLDRATLLA
                     TMPAILDLCV"
BASE COUNT          338 a          710 c          658 g          305 t
ORIGIN      
        1 gtgctgctga agccgaacca gcgcggcacg ctcagcgaga cgcgcgcggc ctgggacgcg
       61 gccagggaag cgggctacgc cggcatcgtc tcggcgcgat cgggcgagac cgaggacacg
      121 acgatcgtcc acctcgccgt cggctggggc acgggccagc tcaaggtcgg ctcgttcgcg
      181 cgcggcgagc gcatggcgaa gtggaacgag gcgctgcgca tcgaagagcg cctgtcgacg
      241 cgggcgacgc tggcgcggcc gctgccgcgc cggacgcggt aaggtctggg gcctgccgac
      301 gacgatgagc gagctcccca cgaccgatac caaagcagcg tccgaagcgg gactcggccc
      361 ccgccttcgc gccgccttcg tctactacct gccgagcgtc gtcgtcatgc tcgcgctgct
      421 cgtcgtctgg cagctcggcg tgcaatggct cggcgtcaag gagtacatcc tgccgacgcc
      481 actcgcggcg ctgcgcacgc tcgccgaccc gaactaccgc tggacggcga acttcctggc
      541 aacgctctat tccgtcctcg gcgcgttcgc gctctcggcc gtgctcggcg tgctgctggc
      601 gatcgtcgtc gtctggaacg acctgctgat gcgcaccgtc atgccggtgc tgatcctctt
      661 caacacgctg cccaagatcg cgctcgcgcc gctcttcgtc gtctggctcg gctacggcat
      721 ctggccgaac atcgtcatcg gcacgacgat cgcgttcttc ccgatggtcg tcaacaccgc
      781 agtcggcctg gccagcgccg agcccgagat gctcgagctg gtgaagacgc tgcgcgcgag
      841 ccgctggaag gtgctgacca agatccgctt cccgaacgcg gtgccgtaca tcttcgtcgg
      901 cctgaagctg gcggcgacga tgagcgtcat cggcgcgctg gtcggcgagt tcgtggcgtc
      961 ggagcgcggc ctcggctcgc tcatcatcac cggcggcgtg acgatgcaga cggcgtcgat
     1021 cttcgcctcg ctgacgctga tctcggtgct cggcctggtc ctctacgggc tggtcgtcgc
     1081 catcgagcac atcgtcgcgc cgtgggcgca ccgagcctag agactttcga tcgacaacga
     1141 ccaaggagac ccccatgaag acatcgactc ccggcacccc ccgagcccac tggccgcgcg
     1201 cgctcgcggc cggcatcgcc gtgctggcgg ccctgccggc cgcggccgag gacaaggtcc
     1261 agctgcagct gaactggttc cacctcgccg accactcgcc gatctacctg gcgatgaaga
     1321 agggctacta caaggaagaa gggatcgacc tgaccgtgct gcgcggcagc ggctcgtccg
     1381 acagcgccaa gaagatcgac ctcggccagt ccgacatcgg catctccgac gcgccgacgg
     1441 tgctgacggc gatcagcaag ggcgccaacc tgaagatggt cgcggtcgtc tacgacaagg
     1501 caggcaacaa cgtcttcttc aagaagagcg ccaacatcaa gtcgccgaag gacctggccg
     1561 gcaagaagat cgccgtgccg ccggccgatt cgcaccgcgt cctctggccc gcgttcgcgg
     1621 cgacgcaggg catcgacgcc aactccgtga cgatggtcaa cgtcaagccc gagggcaagc
     1681 aggcgatcgt cgccgccggc gaggtcgacg ccgccttcga cctctacacc agcttcgcga
     1741 tctgggaaaa ggtgctcggc aaaggcgagg tcggccatct cctctgggcc gactacggcc
     1801 tgccgatcta cggccacacc tacttcgtca acaacgacct ggtcaagaag aacccgaagc
     1861 tgatcgagcg cttcctgcgc gcgacgcaca agggctggcg cgacgccaag gccaacccgg
     1921 cggcgtcgat cgacgcgatg gtcgagcagg tgcccggcct cgaccgggcg acgctactgg
     1981 cgacgatgcc ggcgatcctc gacctctgcg t
//
LOCUS       DASVHM010000533         2297 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1192219, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000533 DASVHM010000000
VERSION     DASVHM010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2297
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1192219"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1026)
                     /locus_tag="VF308_09995"
     CDS             complement(<1..1026)
                     /locus_tag="VF308_09995"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437031.1"
                     /translation="MSALAPALPGIADPRALQRSLGRAERVRKLRAFALTLPLLVFLM
                     LTFLVPIAALLKRAIENPEVAKALPRTAAALERWNRRDAPPDEAYAAVLADLGALPDS
                     ADAGALARRLNSEVPGARSLVMNAYKALPLEGVATLGQAKARLIALDERWADTKYWQA
                     IAKNGSRWTGDYLLASVDLKRDAQGTIERMAPDQRVFGRILVRTFEISAIVTAWCLLL
                     GYPLAYWLSTLPARQANILMIVVLVPFWTSILVRVAAWIVLLQSAGLVNRALIATGLI
                     EHPLALLFNRTGVIIAMTHILLPFMILPLYSVMKGIPPSYLRAAVSLGSTPLAAFFRV
                     YVPQTYPG"
     gene            complement(1082..2107)
                     /locus_tag="VF308_10000"
     CDS             complement(1082..2107)
                     /locus_tag="VF308_10000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010458579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437032.1"
                     /translation="MKKILLVTALAVGAALPALAQQLTVVNFGGANANAQKKAFYEPL
                     EKSGVKVVAVEYNGEQAKIKAMVETKKVTWDVVEVESPDVARGCDEGLFEKLDYSKIG
                     AKSDFLPAAVSDCGIGIFVWSTVMAYDGDKLKTAPTTWADFWDTKKIPGKRAMRKGAR
                     YNLEFALMADGVKPADVYKVLATKDGADRAFKKLSELKPSIQWWEAGAQPPQFLVAGD
                     VIMATAYNGRIDAANREGKNLKITWTGGIYDLDYWTITKGTPNKDAALKFIAFASTPD
                     AQAEYAKNIAYGPTNKNALAKLDAKTLANLPTAPANAKDALQFNLKFWADQGEELEKR
                     FASWAAQ"
     gene            complement(2151..2237)
                     /locus_tag="VF308_10005"
     CDS             complement(2151..2237)
                     /locus_tag="VF308_10005"
                     /inference="COORDINATES: protein motif:HMM:NF019998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437033.1"
                     /translation="MPLSASVVPQAGNDVWLEFPPDFTRIYR"
BASE COUNT          375 a          737 c          785 g          400 t
ORIGIN      
        1 cccgggatag gtctgcggaa cgtatacgcg aaagaacgct gccagcggcg tgctgccgag
       61 cgagacggcg gcgcgcaggt agctcggcgg gatccccttc atcacgctgt acagcggcaa
      121 gatcatgaag ggcagcagga tgtgcgtcat cgcgatgatc acgccggtcc gattgaacaa
      181 cagcgcgagc gggtgctcga tcaagccggt ggcgatcagt gcccggttga cgaggccggc
      241 agactgcaag agcacgatcc acgccgcgac ccggaccagg atcgaggtcc agaacggcac
      301 cagcacgacg atcatcagga tgttggcctg gcgagcaggc agtgtgctga gccagtaggc
      361 aagcggatag cccagcagca ggcaccacgc cgtgacgatc gcgctgatct cgaacgtgcg
      421 aacgaggatc cggccgaaca cgcgctggtc gggcgccatg cgctcgatcg ttccttgcgc
      481 gtcccgcttg aggtcgaccg aggcgagcag gtagtcgccg gtccagcgcg agccgttctt
      541 ggcgatcgcc tgccagtact tcgtgtcggc ccagcgctcg tcgagggcga tcagccgcgc
      601 cttggcttgc cccagggtcg cgacgccctc cagcggcagc gccttgtagg cgttcatcac
      661 gagcgagcgc gcacccggca cttccgagtt caagcgacga gcgagggcgc ccgcgtcggc
      721 gctgtcgggc aacgcaccga gatcggcgag caccgctgcg tacgcctcgt ccggcggcgc
      781 gtcgcgacgg ttccagcgct ccagggccgc cgccgtgcgc ggcagcgctt tcgcgacttc
      841 cggattctcg atcgcacgct tgagcagcgc agcgatcggc acgagaaacg tcagcatcaa
      901 gaagacgagc agcggcaagg tcagcgcgaa cgcgcgcagc ttgcggacgc gttcggcgcg
      961 gccgagcgag cgctgcaggg ctcgagggtc agcgatgccc ggcagggctg gggccagggc
     1021 gctcatcggt cgatcggaca gcgagaggag ccggcaatcg ccggctcctg gtcggcgacg
     1081 tctactgcgc agcccacgaa gcgaagcgct tctcgagctc ttcaccctgg tcggcccaga
     1141 acttgaggtt gaactgcagc gcgtccttcg cgttcgccgg cgcggtcggc aagttggcca
     1201 gcgtcttcgc atcgagcttg gctagcgcat tcttgttggt cgggccgtag gcgatgttct
     1261 tcgcatactc ggcttgcgcg tccggcgtgc tcgcgaaggc gatgaacttc agcgccgcgt
     1321 ccttgttggg cgttcccttg gtgatggtcc agtagtcgag gtcgtagatg ccgccggtcc
     1381 aggtgatctt caggttcttt ccctcacggt tggcggcgtc gatgcggccg ttgtaggcgg
     1441 tggccatgat cacgtcgccg gcgaccagga actggggcgg ctgcgcgccc gcttcccacc
     1501 actggatgct cggcttcagc tcgctcagct tcttgaacgc tcgatcggca ccgtccttgg
     1561 tcgcgagcac cttgtagaca tcggcgggtt tgacgccgtc ggccatcagc gcgaactcga
     1621 ggttgtagcg cgcgcccttg cgcatcgccc gcttgcccgg gatcttcttc gtgtcccaga
     1681 agtcggccca ggtcgtcggg gccgtcttca atttgtcgcc gtcataggcc atcaccgtcg
     1741 accacacgaa gatgccgatg ccgcagtcgc tcaccgccgc aggcaggaag tcgctcttgg
     1801 cgccgatctt gctgtagtcg agcttctcga acagaccttc gtcgcagccg cgagcgacgt
     1861 cgggggactc gacctcgacg acgtcccagg tgaccttctt ggtctcgacc atcgccttga
     1921 tcttggcctg ctcgccgttg tattcgacgg ccacgacctt gaccccggac ttctcgaggg
     1981 gctcgtagaa ggccttcttc tgtgcgttgg cgttcgcgcc gccgaagttg acgaccgtga
     2041 gctgctgggc gagcgccggc agggccgcgc cgacggcaag ggcggtgacg agcaagatct
     2101 tcttcatggt gagctcctgg tgggaggtta cagggtggca aggaagagat tcagcgatag
     2161 atccgcgtga agtcgggcgg gaactccagc cagacgtcgt tgccggcctg cggaacgacg
     2221 ctggccgaca acggcaactt gacgactgca ggcgcctgac cggcaccgac gtcgcagagc
     2281 aggcgcaggt ggtcgcc
//
LOCUS       DASVHM010000534         3470 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_761301, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000534 DASVHM010000000
VERSION     DASVHM010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3470
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_761301"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..573
                     /locus_tag="VF308_10010"
     CDS             <1..573
                     /locus_tag="VF308_10010"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7437034.1"
                     /translation="QGHTIYVTHMHTDHIGGLLRDGQPAFPKAVVRADVHEAGRYLSK
                     AEMDAAPADEKEDYESAMAIFKPYLASGRFKPFDGETNLIPGVRAMPAPGHTPGHTLY
                     VIESGGERMLAWGDLMHVAALQFPLPAATFETEWSTTKSAQQRQTVFADVASHGDYVA
                     AAHVASPGIGKLRAEGDGYTWVPVSYIFGK"
     gene            695..913
                     /locus_tag="VF308_10015"
     CDS             695..913
                     /locus_tag="VF308_10015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437035.1"
                     /translation="MALLGRAAIAMWWDISPERKAEFEDWHSHEHLPERLAIPGFRRG
                     SRWAAADGGPGFFVLYEPDDYETLTSPH"
     gene            1344..1641
                     /locus_tag="VF308_10020"
                     /pseudo
     CDS             1344..1641
                     /locus_tag="VF308_10020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013801827.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
     gene            1777..2028
                     /locus_tag="VF308_10025"
     CDS             1777..2028
                     /locus_tag="VF308_10025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437036.1"
                     /translation="MKNALIALAFVFGAAGVHAQASTAAKETGKATAESAKAATESTK
                     AAVSSEPAKTVHKAKAKVHRAKARHARHEAKDAAKEATK"
     gene            complement(2114..3397)
                     /gene="boxA"
                     /locus_tag="VF308_10030"
     CDS             complement(2114..3397)
                     /gene="boxA"
                     /locus_tag="VF308_10030"
                     /EC_number="1.14.13.208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019653549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA];
                     GO_process: GO:0010128 - benzoate catabolic process via
                     CoA ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA 2,3-epoxidase subunit BoxA"
                     /protein_id="HEX7437037.1"
                     /translation="METASEAGVIKQHLIDPEICIRCNTCEATCPVGAITHDDRNYVV
                     RADVCNYCMACIAPCPTGSIDNWRTVPKVRAYDIAEQLTWDELPPELTPEQLAAEGVT
                     PEAAASVAAEPVLAVKPESAAGEAPFNSAAFGASVPPWSAAHAYTNLFGPKNPTTATV
                     AGNVNCTEAGFHNQTHHIVLDFGAIPFPVLEGQSIGIVPPGVDANGRPHVARQYSVAS
                     PRNGERPGYNNVSLTVKRVTEDHHGRPTRGVASNYLCDLKVGDAVQVIGPFGQSFLMP
                     NHPKSHIVMICTGTGSAPMRAMTEWRRRLRKSGKFEGGKLMLFFGARTREELPYFGPL
                     QSLPKDFIDINFAFSRTPGQPKKYVQDLLHERAVDLVPLLSDPNSHFYVCGLKAMEEG
                     VLLALRDVAVGADLDWDAAIGPALKREGRLHLETY"
BASE COUNT          557 a         1211 c         1165 g          537 t
ORIGIN      
        1 cagggccaca cgatctacgt gacccacatg cacaccgacc acatcggcgg cttgctgcgc
       61 gacggccagc ccgccttccc caaggccgtc gttcgtgccg acgtgcacga ggcgggtcgc
      121 tacctcagca aagcggagat ggatgccgcg cccgccgacg aaaaggagga ctacgagagc
      181 gccatggcca tcttcaagcc ctacctcgca tccggcaggt tcaagccatt cgatggagaa
      241 acgaatctga taccgggggt gcgtgccatg ccggcaccgg gtcatacgcc gggccacacc
      301 ctctacgtga tcgaaagtgg cggcgaacgc atgctggcct ggggcgacct gatgcatgtc
      361 gcggcgctgc agtttcccct gccggcagca acgttcgaga cggaatggag caccacgaag
      421 tccgcgcagc agcgccagac cgtctttgcc gacgtggcga gtcacggtga ctacgtggca
      481 gcggcacacg ttgcatctcc gggcatcggg aaacttcgcg cagaaggcga tggctacacc
      541 tgggtgccgg tcagctatat cttcggcaaa tgaccgcctc gaaggtcagc attgcggcga
      601 cgtctcggcc gcgcgaattt cgctgagggg tcgaaatcag ccttccatcg gcccggcaag
      661 cgggctgccg ggctgacccg tcgcagggaa cgggatggcg ctactgggcc gtgccgcgat
      721 cgccatgtgg tgggacatct cgcccgagcg caaggccgag ttcgaggact ggcactcgca
      781 cgagcatctc cccgaacggc tcgccatccc cggcttccgg cgcggatcgc gctgggcggc
      841 ggccgatggc ggcccgggct tcttcgtgct gtacgagccc gacgactacg agacgctgac
      901 gtcgccgcac tagctcgagc ggctgaaccg gccgtcgccg ttgtcgaccc agctgatgcc
      961 gcatcaccgc gagatggttc gcagccagcg ccgcgtcgtc gagacgttcg gcctcggcgt
     1021 cgcgcgccac gtcctgacgc tgcgcctttc gccgcccgcc gccggcagcg ggcggctgcg
     1081 aacgttcctc ggcgagcagg ccaggaaggt cgcagcccga gccggaacga cggccgccca
     1141 cctcctgcgc accgagacgc cggaggtcgg cgtcaccacc gagcagaagt tccgcggcgg
     1201 ccgcgacaag gcggcggacc ggatcttcga cgcttgcggc tacgacctcg ccgcgctgca
     1261 aagccttcgc tccggcgagc tgtccgacga agagctgtcg cgccggggca ccgaggggcc
     1321 ggtccaggcg ggcctctacg cccacgggct cgaacgatcc ggccggcttc gacctggtgg
     1381 tcaacggcac gccgctggga atgagcgctg gcgacccgct tcccgtcgac gtccggcgcc
     1441 tggagccgcg aacgttcgtc gccgacgtcg tcatgcggac cgacgtgacc cgacttcctc
     1501 gccgcggccc gggaacgggg ctgccgcgtc caggtcggcg tcgacatgct tttcgagatg
     1561 atcccgccgt atctcgaatt cttcggcttc ccggcgacga cccctgagtg cctgcgcgcc
     1621 atcgcccgcc tggggtactg aggcggcctg cgcaggggcg tggcaggagc ggcgcgggac
     1681 tcgtcaacgg aaatgcgtct ccggcgtttc tagcagggtc ggaagaacct tccccctctc
     1741 gttccgcaac caaaacccac tcccaggaga acctccatga agaacgcact gattgcactc
     1801 gcctttgtct tcggcgccgc cggcgtccac gcccaagcgt ccaccgccgc caaggaaacc
     1861 ggcaaggcca ccgccgagtc ggcgaaggca gccaccgaaa gcaccaaggc cgccgtgagc
     1921 agcgagccgg ccaagaccgt gcacaaggcc aaggccaagg tgcaccgcgc caaggcccgc
     1981 catgcccgcc atgaagccaa ggacgcggcc aaggaagcca ccaagtaaga cggctgtccg
     2041 gatctcggcg ccgcgcccgc ggcgctcgac aagaaacgcg gcttcggccg cgttttcctt
     2101 ttggatcgag gcctcagtag gtctcgaggt gcaggcgacc ctcccgcttc agcgccgggc
     2161 cgatggcggc gtcccagtcg agatcggcgc cgacggccac gtcgcgcagc gccagcagca
     2221 cgccctcttc catcgccttc agcccgcaca cgtagaagtg cgagttcggg tccgaaagca
     2281 gcggcacgag gtcgaccgcg cgctcgtgga gcaggtcctg cacatatttc ttcggctggc
     2341 ccggcgtccg cgagaacgcg aagttgatgt cgatgaaatc cttcggcagc gattgcagcg
     2401 ggccgaagta cggcagctcc tcgcgcgttc gcgcgccgaa gaagagcatc agcttgccgc
     2461 cctcgaactt gccgctcttg cgcaggcgtc ggcgccattc ggtcatcgcc cgcatcggcg
     2521 cgctgccggt gccggtgcag atcatcacga tgtgcgactt cgggtggttc ggcatcagga
     2581 agctctggcc gaacgggccg atcacctgca ccgcgtcgcc caccttcagg tcgcacaggt
     2641 agttcgacgc gacgccccgc gtcggccggc catggtggtc ctcggtgacg cgtttcaccg
     2701 tgagcgagac gttgttgtag ccgggccgct cgccgttgcg cgggctcgcc accgagtact
     2761 ggcgcgcgac gtgcggccgg ccgttcgcgt cgacgcccgg cggcacgatg ccgatcgatt
     2821 gtccctcgag caccgggaac gggatcgcgc cgaagtcgag gacgatgtgg tgcgtctggt
     2881 tgtgaaagcc cgcctcggtg cagttgacgt tgcccgcgac ggtcgccgtg gtcggattct
     2941 tcggcccgaa caggttggtg tacgcgtgcg ccgccgacca cggcggcacg ctcgcgccga
     3001 aagcggcgct gttgaacggc gcctcgccgg cggccgactc gggcttgacg gcaagcacgg
     3061 gctcggccgc cacgctcgcc gcggcctccg gcgtcacgcc ttcggcggca agctgctcgg
     3121 gcgtgagctc gggcggcagc tcgtcccacg tgagctgctc ggcgatgtcg taggcgcgca
     3181 ccttcggcac ggtgcgccag ttgtcgatcg acccggtcgg gcacggcgcg atgcacgcca
     3241 tgcagtagtt gcagacgtcg gcgcggacga cgtagttgcg gtcgtcgtgg gtgatcgcac
     3301 cgaccgggca ggtcgcctcg caggtgttgc agcggatgca gatctcgggg tcgatcaggt
     3361 gctgcttgat cactcctgct tcgctggccg tctccatccc cgcatcatca gccaaatcgc
     3421 acgtactcga aatcgacggg ttgcttgttg atgcccatcg ccggcggcgc
//
LOCUS       DASVHM010000535         1783 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_761384, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000535 DASVHM010000000
VERSION     DASVHM010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_761384"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /locus_tag="VF308_10035"
     CDS             <1..234
                     /locus_tag="VF308_10035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrile hydratase"
                     /protein_id="HEX7437038.1"
                     /translation="RAPTLNALGQSTYEGVHFMAALAKRAADDEAPLLGQLPSPLAFK
                     SVRGIRYLGNERCSHPTFLAEAGGHFFQRPVAL"
     gene            382..>1783
                     /locus_tag="VF308_10040"
     CDS             382..>1783
                     /locus_tag="VF308_10040"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin domain-containing protein"
                     /protein_id="HEX7437039.1"
                     /translation="MTLLAWLFGLIVLIVAVAVAVAFLSRFYRKTSRDVAIIRTGFGG
                     QKIVLSGGCLALPFLHKVDEINMRTMRIEVSRAGAKSLITQDRMRVDVELEFYLRVQP
                     TVDGVATAAQAIGSKSLSPDGVRNLLEGRFIDAIQATAAGLTMDSLHDKRAEFVGTIR
                     ESVRENLAHSGLQLESVSLTRMDQATFAALDDNNAFNAVGLRKLAEIIATSKKKRAEI
                     EADADVSVRQTQLEAIKQRLSLSRQEEEAQIGQRLEIEKLKASSDADTARAREQSTVA
                     SENARIEREKDTRVAEIQKQRELRKLEIEAQLNAEIRKVDSSITLALKHAEEAKAQAQ
                     AELARTEIVLAQEQLQTERERAVADRSREIAIKREQERGDVEASKAQSETTVLLMTAK
                     AEASATTTRAEAQRIRLTAESEGARAMIAAENSRSGELMHMQLEQHRLDRRPEIIAQM
                     MKPAEKIDSIRIHQVTG"
BASE COUNT          348 a          604 c          581 g          250 t
ORIGIN      
        1 cgcgcgccga ccctcaacgc cctcgggcaa tcgacctacg agggcgtcca cttcatggcc
       61 gccctcgcca agcgcgcggc cgacgacgag gccccgctgc tcggccaact gccctcgccg
      121 ctggccttca agtcggtgcg cggcatccgc tatctcggca acgaacgctg ctcgcatccc
      181 acatttctcg ccgaggccgg cggccacttc ttccagcgtc cggtggcgct gtagagagcc
      241 gcgccgccac ttcagcggcg cccgtcgagc gcgacgggaa ggtattttcc aagtgaactg
      301 ctatagtttc cttggaaagt aaaccgtggc caagatgctt gccagcgtct tgagttctag
      361 cgacgtcgag ggagcgaacc catgaccttg ttggcctggc tcttcggcct gatcgtgctg
      421 atcgtcgcgg ttgccgtggc ggtcgcgttc ctgagccgct tctatcgcaa gacttcgcgc
      481 gacgtcgcga ttatccgcac cggcttcggc gggcagaaga tcgtgctgtc gggcggctgc
      541 ctcgcactgc ctttcctgca caaggtcgac gagatcaaca tgcgcacgat gcgcatcgag
      601 gtgagccggg ccggcgccaa gtcgctgatc acccaagacc ggatgcgggt cgacgtggag
      661 ctcgagttct acctgcgcgt gcagccgacc gtcgacggcg tcgccaccgc cgcccaggcg
      721 atcggctcca aatcgctcag ccccgatggc gttcgcaacc tcctcgaagg ccgcttcatc
      781 gacgcgatcc aggcgacggc tgcgggcctg acgatggatt cgctgcacga caagcgcgcc
      841 gaattcgtgg gcacgatccg cgaatcggtg cgcgagaacc tcgcccacag cggcctgcag
      901 ctcgaatcgg tgtcgctgac ccgcatggat caggccacct tcgcagccct cgacgacaac
      961 aacgcgttca acgcggtcgg gctgaggaag ctcgccgaga tcatcgcgac gagcaagaag
     1021 aagcgcgccg agatcgaggc cgatgccgac gtgtcggtgc gccagacgca gctcgaagcc
     1081 atcaagcagc gcctcagcct gtcgcgccag gaagaggaag cgcagatcgg ccagcgcctc
     1141 gagatcgaga agctcaaggc gtcgagcgac gccgacacgg cgcgggcgcg cgaacagtcg
     1201 accgtcgcct cggagaacgc acgcatcgag cgtgaaaagg acacccgcgt cgccgagatc
     1261 cagaagcaac gcgagctgcg caagctcgag atcgaggccc agctcaatgc cgagatccgc
     1321 aaggtcgaca gttcgatcac gctggccttg aagcatgccg aggaagcaaa ggcacaggcg
     1381 caggccgaac tcgcccgcac cgagatcgtg ctggcgcagg agcagttgca gaccgagcgc
     1441 gagcgcgccg tcgccgaccg ctcgcgcgag atcgcgatca agcgcgagca ggaacgcggc
     1501 gatgtcgagg cctcgaaggc gcaaagcgaa accacggtgt tgctgatgac cgcgaaggcc
     1561 gaagcgtcgg cgacgacgac gcgcgcggag gcgcagcgca tccgcctgac cgcggagtcc
     1621 gaaggcgcgc gggcgatgat cgcggccgag aactcgcgca gcggcgaact gatgcacatg
     1681 cagctcgagc agcaccggct cgaccgccgg ccggagatca tcgcgcagat gatgaagccg
     1741 gccgagaaga tcgacagcat ccgcatccac caggtcaccg gct
//
LOCUS       DASVHM010000536         3678 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_111626, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000536 DASVHM010000000
VERSION     DASVHM010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3678
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111626"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1145)
                     /locus_tag="VF308_10045"
     CDS             complement(<1..1145)
                     /locus_tag="VF308_10045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX7437040.1"
                     /translation="MTIRSLVQPDRVHRDVYLSDEIFALEQKHFFANTWSYLGHASQV
                     PAPGDYVTQDIAGRPLVMVRQPDGAIRVLYNRCAHKGTQLVTEASGNASKYFRCPYHA
                     WTYRLDGAPMGLPLKAGYEGTGLRDCESGRGLTALGHVAVYRDFVFVKLGDAGPAFED
                     YFGAALRSIDNMVDRSPLGRLEIAGGCLRNVIRCNWKMYLENINDTVHPLSTHESATA
                     AAGKVWQGRPADAAKPMAIEQILPFGVGHDFFDRMGGRVLPNGHSVLGTRYSIHSGYA
                     QLPDYEQAMREAYGVERATEILQHSPQNALCYPSLALKGSPQAIRVIRPLAADRTVVE
                     AWSFRVEGAPDLLFERSVTYNRLAFSPMSVVAHDDVHLFQGIQKGLRA"
     gene            complement(1212..1943)
                     /locus_tag="VF308_10050"
     CDS             complement(1212..1943)
                     /locus_tag="VF308_10050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7437041.1"
                     /translation="MSGGPRVAAVTGGSAGIGLAICERLLAEGCEVVSLARRKNPVVH
                     PKLHSIEVDLMDRAATAAAAAELARRFEVTTLVHNAGVIRPALLADVKLDDLDALVEL
                     HLGCAIQLVQAVLPTMRAARFGRVVLLSSRAAVGLATRTAYSATKAGMLGMARTWALE
                     LAADGITVNVVAPGPIRTDMFHAVVAEGSDKERALAAAVPVKRLGEAADVARAVCFFA
                     DRASGFVTGQVLYVCGGTSVGSLTL"
     gene            complement(1940..2788)
                     /locus_tag="VF308_10055"
     CDS             complement(1940..2788)
                     /locus_tag="VF308_10055"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018913358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEX7437042.1"
                     /translation="MNSTTAAITTQKLTATAIPAALPTLLGQLVAALAAKRIRVVDLT
                     QTLTPDFPQIALPPEMGQCWPFRIEEVSAYDARGPGWYWNNFSCGEHTGTHFDAPIHW
                     ISGRDLPNNSVDTIPAQHFVAPACVIDCSEQVKANSDYLLTVEDIERFEAAHGRVPEG
                     AWFLMRTDWSKRHDPEAYQNFDETGQHTPGPSSEAVQFLVEQRGVLGFGSEAIGTDAG
                     QGYHLRPPYPCHYYMHGAGRYGLQCLSNLDLLPPTGAVLICPPLKIEKGSGSPLRVLA
                     LVEEPA"
     gene            2857..3147
                     /locus_tag="VF308_10060"
     CDS             2857..3147
                     /locus_tag="VF308_10060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018059927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEX7437043.1"
                     /translation="MPLTMIRSFKHKGLRKLWVDDDYAGIPGSHAPRILRILDLLEAA
                     TKPRDMALPGYGFHPLKGARKGEFAVSVTGNWRITFEFDNADATNVNLEDYH"
     gene            3151..3483
                     /locus_tag="VF308_10065"
     CDS             3151..3483
                     /locus_tag="VF308_10065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008174257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HEX7437044.1"
                     /translation="MKMKTTMRNSKRRPTHPGAVLREDVLPALSMTQAQFAQALGVSR
                     LTVSHLLNEHRAVSPDMALRLEKALGTSAETWCGMQAAVDLWESRQHADEFAAIKRLN
                     DSSYALAA"
BASE COUNT          595 a         1177 c         1307 g          599 t
ORIGIN      
        1 gcgcgcaggc ccttctggat gccctggaag aggtggacgt cgtcgtgcgc caccaccgac
       61 atcggcgaga aggcgagccg gttgtacgtg accgagcgct cgaacagcag gtcgggcgcg
      121 ccttcgacgc gaaagctcca ggcctcgacg acggtgcggt cggccgcgag cgggcggatc
      181 acgcggatcg cctgcggcga acccttgagc gccaggctcg ggtagcagag cgcgttctgc
      241 ggcgagtgct gcaggatctc ggtcgcccgc tcgacgccgt acgcctcacg catcgcctgc
      301 tcgtagtcgg gcagctgggc gtagcccgaa tggatgctgt agcgggtgcc gagcacgctg
      361 tggccgttcg gcagcacgcg gccgcccatg cggtcgaaga aatcgtggcc gacgccgaac
      421 ggcaggatct gctcgatcgc catcggcttg gcggcatcgg ccggccggcc ctgccagacc
      481 ttccccgccg ccgcggtcgc cgactcgtgc gtcgagagcg gatgcaccgt gtcgttgatg
      541 ttctccaggt acatcttcca gttgcagcgg atcacgttgc gcaggcatcc gccggcgatc
      601 tcgaggcggc cgagcggcga gcggtcgacc atgttgtcga tcgagcgcag cgcggcgccg
      661 aaatagtctt cgaacgccgg gccggcgtcg ccgagcttga cgaacacgaa gtcgcggtag
      721 acggcgacgt ggccgagtgc ggtcaggccg cggcccgatt cgcagtcgcg caggccggtg
      781 ccttcgtagc cggccttgag cggcagcccc atcggcgcgc cgtcgagccg gtaggtccag
      841 gcgtggtacg ggcagcgaaa gtacttgctg gcgttgccgc tcgcctcggt gacgagctgc
      901 gtgcccttgt gcgcgcagcg gttgtacagg acccggatcg cgccgtcggg ctggcgcacc
      961 atcacgagcg gccggccggc aatgtcctgc gtcacgtagt cgcccggcgc cggcacctgg
     1021 ctcgcgtggc cgaggtagct ccaggtgttc gcgaagaaat gcttctgctc gagcgcgaag
     1081 atttcgtcgc tcaggtatac gtcgcggtgg acccggtccg gctggacgag ggagcggatc
     1141 gtcatggaac ggttctaaat gatttaagag taaagcatgt taggcgctgg gccgacgggt
     1201 ggcaagcgcc gctacagcgt caggctgccg acgctggtgc cgccgcagac gtagagcacc
     1261 tggccggtga cgaagccgct cgcccggtcg gcgaagaagc acaccgcgcg ggcgacgtcg
     1321 gccgcttcgc cgaggcgctt caccggcacc gccgcggcga gcgcgcgctc cttgtcgctg
     1381 ccttcggcga cgaccgcgtg gaacatgtcg gtgcggatcg ggcccggcgc gacgacgttg
     1441 acggtgatgc cgtcggcggc gagctcgagg gcccaggtgc gcgccatgcc gagcatcccg
     1501 gccttggtcg ccgagtacgc ggtgcgcgtc gccaagccga ccgcggcgcg cgacgacagc
     1561 agcacgacgc ggccgaaccg cgctgcacgc atcgtcggca gcacggcctg gacgagctgg
     1621 atcgcgcacc ccaggtgcag ctcgaccagc gcatcgaggt cgtcgagctt gacgtcggcg
     1681 agcagcgccg ggcggatcac gccggcgttg tgcaccagcg tcgtcacctc gaagcggcgc
     1741 gccagctcgg cggccgccgc ggcggtcgcg gcgcgatcca tcagatcgac ctcgatgctg
     1801 tgcagcttcg ggtggaccac cggattcttg cgccgcgcca gcgagacgac ctcgcagccc
     1861 tccgcgagca gccgttcgca gatggcgagg ccgatgccgg cgctgccgcc ggtgacggcg
     1921 gcgactcggg gaccgccgct catgccggtt cctcgaccag cgcgagcacg cgcagcgggc
     1981 tgccgctgcc cttctcgatc ttcagcggcg gacagatcag caccgcccca gtgggcggta
     2041 gcaggtcgag gttcgacagg cactgcagcc cgtagcgacc ggcgccgtgc atgtagtagt
     2101 ggcacggata gggcggccgc aggtgatagc cctggccggc atcggtgccg atcgcctcgg
     2161 agccgaagcc gagcacgccg cgctgctcga ccaggaactg caccgcctcc gagctcggcc
     2221 ccggcgtgtg ctggccggtc tcgtcgaagt tctgatacgc ctcggggtcg tggcgcttcg
     2281 accagtcggt gcgcatcagg aaccacgcgc cttccggcac gcggccgtgg gccgcctcga
     2341 agcgctcgat gtcctcgacc gtcagcaggt agtccgagtt cgccttgacc tgctccgagc
     2401 agtcgatcac gcacgccggc gcgacgaagt gctgcgccgg gatcgtgtcg accgagttgt
     2461 tcggcaggtc gcgtcccgag atccagtgga tcggtgcgtc gaagtgggtg ccggtgtgct
     2521 cgccgcagga aaagttgttc cagtaccagc ccgggccgcg cgcgtcgtag gccgagacct
     2581 cctcgatccg gaacggccag cactggccca tctcgggcgg cagcgcgatc tgcggaaagt
     2641 cgggcgtcag cgtctgcgtg aggtcgacga cgcggatgcg cttcgcggcg agcgccgcga
     2701 cgagctggcc gaggagggtc ggcagcgccg ccgggatcgc cgtggccgtg agcttctggg
     2761 tagtaatggc agctgtcgtt gaattcatgg ccgtcgcgct cacttgaggg tcttggcagg
     2821 tgcattgcca tgagatacaa tgtaatgcat ggatagatgc cgctgacgat gattcgatcg
     2881 ttcaagcaca agggacttcg gaagctctgg gtcgatgacg actacgccgg tattccaggc
     2941 tctcacgcgc cgcggattct gcggattctc gatttgctag aggcggcgac gaagccccgg
     3001 gacatggcgt tgccgggata cggctttcat cccttgaagg gtgcacgcaa aggtgagttc
     3061 gcggtgagtg tgactggcaa ctggcggatc acgttcgaat tcgacaacgc ggatgctacc
     3121 aatgtcaatc ttgaggacta ccactgaggc atgaagatga agaccacgat gcgcaattcc
     3181 aagcgtcggc cgacgcatcc cggtgccgtg ttgcgagagg acgtgctgcc ggccttgagc
     3241 atgacgcagg cccagtttgc gcaggcgctc ggggtgagcc ggctgaccgt gtctcatttg
     3301 ctgaacgagc accgggccgt ctcgcccgac atggcgctgc gtctggaaaa ggctttgggc
     3361 accagtgccg agacgtggtg cggcatgcag gctgccgttg acctgtggga atcgcgacag
     3421 catgccgatg agtttgcggc catcaagcgg ctaaacgact cgtcttacgc gcttgcggcg
     3481 tgacagggct cttgagactg tcggctgagg ctggcagggt cgaagtagaa accgccgcga
     3541 tctgttcggc cagccgcacc agactgcggt gcccagcgcg gcgggtgaaa gcggtggttg
     3601 aagcgccatc ggtcttacga taaactatac gtaagagtca aacacgtcaa gcccttcatg
     3661 acgatcccca ccaagcgt
//
LOCUS       DASVHM010000537         1732 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1049183, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000537 DASVHM010000000
VERSION     DASVHM010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1049183"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..497
                     /locus_tag="VF308_10070"
     CDS             <1..497
                     /locus_tag="VF308_10070"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7437045.1"
                     /translation="KAADFLEIAESDWDAVIDVNLKGAFLVGQAVAGAMTKSGGGAIV
                     NMSSVNAVMAIPSIASYNASKGGINQLTRAMALALADHGVRVNAVAPGTIATELARNA
                     VLGSDEARRRILSRTPLRRLGEPGEIADVCAFLLSSASSYMTGAIVYVDGGRLALNYT
                     VAAT"
     gene            531..1016
                     /locus_tag="VF308_10075"
     CDS             531..1016
                     /locus_tag="VF308_10075"
                     /inference="COORDINATES: protein motif:HMM:NF016701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX7437046.1"
                     /translation="MTETSPDAMTGGCLCGAVRFEARPDKLEGYYCHCRMCQLAFGNT
                     RAAFVNLRKDQVAWTAAAPKRYASSKIALRGFCGQCGTPLSFEYLASDRMDLSVGSFD
                     HPAQLRPVAHFAVESRIASWHVADGLPEERLDENVKIAQRWRDAYGSDVTPGVAAARE
                     G"
     gene            complement(1024..>1732)
                     /locus_tag="VF308_10080"
     CDS             complement(1024..>1732)
                     /locus_tag="VF308_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015014113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7437047.1"
                     /translation="QSLALLSLLALPAAWVLRGNSASAATAAVKPETTREAIGRALRD
                     PSYRYLCAGFFVCGFHVAFIATHLPGVVAACQLPPAVGAWALAIVGLFNIVGSFSVGW
                     AVGRWRMKSLLSLIYAARGLAVLIFLFAPKTEAVVLVFAAVIGLTYLSTVPPTAGLVA
                     KFFGPVHMGTLFGVVMLTHQIGGFLGAYFGGKAFEWTGSYDWMWYADIVLAVGAALVH
                     LPIRETLPLAQASAAAA"
BASE COUNT          307 a          590 c          599 g          236 t
ORIGIN      
        1 tcaaggccgc cgacttcctc gagatcgccg aaagcgactg ggacgcggtg atcgacgtca
       61 acctgaaggg cgccttcctg gtcggccagg cggtcgcggg cgcgatgacg aagagtggag
      121 gcggcgccat cgtcaacatg agttcggtga acgcagtgat ggcgatcccg agcatcgcca
      181 gctacaacgc gagcaagggc ggcatcaatc agctgacccg cgcgatggcg ctcgcgctgg
      241 ccgaccacgg cgttcgcgtc aatgcggtgg cgccgggcac gatcgcgacc gagctcgccc
      301 gcaacgcggt gctgggcagc gacgaggcgc gccggcgcat cctcagccgc acgccgctca
      361 ggcgcctcgg cgaacccggc gagatcgccg acgtctgcgc tttcctgctc agcagcgcgt
      421 ccagctacat gaccggcgcg atcgtctatg tcgatggcgg tcggctggcg ctcaactaca
      481 cggtggccgc gacctgaccg acgcgcgctt tttttgtcga tggagaaccc atgaccgaga
      541 cttcaccgga tgcgatgacc ggcgggtgcc tgtgcggtgc ggtgcgcttc gaggcccgcc
      601 ccgacaaact cgagggctac tactgccact gccgcatgtg ccagctcgcc ttcggcaaca
      661 cgcgcgccgc gttcgtcaat ctgcgcaagg accaggtcgc ctggacggcc gccgccccaa
      721 agcgctatgc ctcgtcgaag atcgcgctgc gcgggttctg cggccagtgc gggacgccgc
      781 tcagcttcga atacctcgcc tccgatcgca tggacctgtc ggtcggcagc ttcgatcatc
      841 cggcgcaatt gcggccggtg gcgcatttcg cggtcgagtc ccggatcgcg tcgtggcacg
      901 tcgccgacgg ccttcccgag gagcgtctcg acgagaacgt gaagatcgcg caacgctggc
      961 gcgacgccta cggcagcgac gtgacaccgg gcgtcgccgc cgcgcgagaa ggctagcgcg
     1021 gcttcaggcc gccgcggccg aggcctgcgc gagcggcagc gtttcgcgga tcggcagatg
     1081 cacgagcgcg gcgccgacgg caagcacgat gtcggcgtac cacatccagt cgtagctgcc
     1141 ggtccattcg aaggccttgc cgccgaagta ggcgccgagg aagccgccga tctgatgcgt
     1201 cagcatgacg acgccgaaga gcgtgcccat gtgcaccgga ccgaagaatt tcgcgaccag
     1261 gccggccgtc ggcggtacgg tcgaaagata ggtgaggccg atcaccgccg cgaacaccag
     1321 cacgaccgcc tcggtcttcg gtgcgaacag gaatatcagc acggcgaggc cgcgcgccgc
     1381 atagatcagc gacagcagcg acttcatgcg ccagcggccg accgcccagc cgaccgagaa
     1441 gctgccgacg atgttgaaga ggccgacgat cgcgagagcc caggcgccga cggcgggcgg
     1501 cagctggcag gccgccacga ctcccggcag gtgggtcgcg atgaaggcaa cgtggaagcc
     1561 gcagacgaaa aaacccgcgc acaggtagcg atagctcgga tcgcgcagcg cgcgcccgat
     1621 cgcctcgcgg gtggtctcgg gtttgaccgc ggccgttgcg gcgctcgccg agttgccccg
     1681 caacacccag gcggcaggaa gcgcgagcag cgaaagcagc gccaggctct gc
//
LOCUS       DASVHM010000538         1852 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_325872, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000538 DASVHM010000000
VERSION     DASVHM010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325872"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1239
                     /gene="fumC"
                     /locus_tag="VF308_10085"
     CDS             <1..1239
                     /gene="fumC"
                     /locus_tag="VF308_10085"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004532308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEX7437048.1"
                     /translation="KRCAAIVNRELGTLEVRKADAIAAAADEVLGARHDAQFPLSVWQ
                     TGSGTQTNMNMNEVLANRASQLLGGPVGEGRLVHPNDDVNRGQSSNDVFPTAMSVAAV
                     RGVETRLLPALATLRATLAAKSAAFADIVKIGRTHLQDATPLTLGQEISGWVAQLDHD
                     IGHVRDALPHLRELALGGTAVGTGLNAHPEFGTRVAAELARATGLGFETAPNKFEALA
                     AHDALVHAHGCLKTLAASLMKIANDVRWLASGPRSGLGEIRIPENEPGSSIMPGKVNP
                     TQCEALTMLGCQVLGNDVAVNVAGASGNFELNVYKPVIVHNFLQSVRLLADGAQSFEA
                     HCAGGIEPDRARIAELVQRSLMLVTALNPHIGYDKAAQIAKQAHKSGSTLREAAIASG
                     WVSAADFDAWVRPEQMVGRR"
     gene            1287..>1852
                     /gene="rpiA"
                     /locus_tag="VF308_10090"
     CDS             1287..>1852
                     /gene="rpiA"
                     /locus_tag="VF308_10090"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HEX7437049.1"
                     /translation="MTQDELKILVGRAATAYVIPGAVIGVGTGSTVNCFIDALAALKD
                     RIAGAVSSSEASSARLRAHGIEVLDPNSVAGFPVCIDGADEIDHAGCMIKGGGAALTR
                     EKIVADMAARFICIADESKLVATLGRFPLPVEVIPMASAQIARRLRALGGEPALRAGV
                     TTDNGGHLIDVKGLVIADPAALEREINQ"
BASE COUNT          298 a          650 c          634 g          270 t
ORIGIN      
        1 aagcgctgcg ccgcgatcgt caaccgcgaa ctcggcacgc tcgaggtccg caaggccgac
       61 gcgatcgccg ccgcggccga cgaggtgctc ggcgctcgcc acgacgccca gtttccgctg
      121 tcggtgtggc agaccggttc gggcacgcag accaatatga acatgaacga ggtgctcgcc
      181 aatcgtgcct cgcagctgct cggcggcccg gtcggagaag gccggttggt ccatccgaac
      241 gacgacgtga accgcggcca gtcgtcgaac gacgtgttcc cgaccgcgat gagcgtggcc
      301 gcggttcggg gggtcgagac ccgcctgctg ccggcgctcg cgacgctgcg cgcgaccctc
      361 gccgctaagt cggcggcgtt cgccgacatc gtgaagatcg gtcgcaccca tctgcaggac
      421 gccacaccgc tgacactggg ccaggagatc tccggctggg tggcgcagct cgatcacgac
      481 atcggccacg tgcgcgacgc cctgccgcac ctgcgcgaac tcgcgctcgg cggcacggcg
      541 gtcggcaccg gtctcaacgc ccaccccgag ttcggcaccc gggtggcggc cgaactcgcg
      601 cgcgcgaccg gcctcggctt cgaaaccgcg ccgaacaagt tcgaggccct cgcggcgcac
      661 gacgcgctgg tgcatgcgca cggctgcctg aagacgctcg cagcgtcgct gatgaagatc
      721 gctaacgacg tgcgctggct ggcctcgggg ccgcgctccg ggctcggcga gatccgcatt
      781 ccggaaaacg agccgggcag ctcgatcatg ccgggcaagg tcaacccgac ccagtgcgag
      841 gcgctgacga tgctcggctg ccaggtgctc ggcaacgatg tcgccgtcaa cgtcgccggc
      901 gcctcgggca acttcgaact caacgtctac aagccggtca tcgtccacaa cttcctgcag
      961 agcgtgcgcc tgctcgccga cggcgcgcag agcttcgagg cgcactgcgc gggtggcatc
     1021 gagcccgatc gcgcgcgcat cgccgaactg gtgcagcgtt cgctgatgct ggtgactgcc
     1081 ctcaacccgc acatcggcta cgacaaggcg gcgcagatcg ccaagcaggc gcacaagagc
     1141 ggcagcacct tgcgcgaggc cgcgatcgca tccggctggg tcagtgccgc cgacttcgat
     1201 gcctgggtcc ggcccgagca gatggtcggc aggcgctgag ctcccgggct cgccgacaat
     1261 cgccgcttca ctcgccgcac cgcaacatga cgcaagacga attgaagatt ctcgtgggcc
     1321 gggccgcgac cgcatatgtc atccccggcg cggtgatcgg cgtcggcacc ggatcgaccg
     1381 tgaattgctt catcgatgcc ctcgccgcgt tgaaggaccg catcgccggc gcggtgtcga
     1441 gcagcgaggc gagctcggcg cggctgcgcg cccatggcat cgaggtgctc gatccgaaca
     1501 gcgtggcggg ctttccggtc tgcatcgacg gcgccgacga gatcgatcac gcgggttgca
     1561 tgatcaaggg cgggggcgcc gcgttgacgc gcgagaagat cgtcgccgac atggccgctc
     1621 gtttcatctg catcgccgac gagtcgaagc tggtcgcgac gctcgggcgc tttccgcttc
     1681 cggtcgaagt gattccgatg gcgtcggcgc aaatcgctcg gcgcctgcgc gcgctcggcg
     1741 gcgagcccgc cctgcgcgcc ggcgtgacga ccgacaatgg cggccacctg atcgacgtga
     1801 agggcctggt catcgccgat ccggcagcgc tcgagcgcga gatcaaccag tg
//
LOCUS       DASVHM010000539         5980 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_978567, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000539 DASVHM010000000
VERSION     DASVHM010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5980
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_978567"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1149)
                     /locus_tag="VF308_10095"
     CDS             complement(<1..1149)
                     /locus_tag="VF308_10095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013123899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7437050.1"
                     /translation="MAVLSLSNAHLAYGHVALLDGASLSLDPGERIGLIGRNGTGKSS
                     LLKIIAGLEKLDDGLLQQTQGLRIRYVPQEPQFDDAGTVFDAVGEGVAEARVVRDAYE
                     AHAEGVDLDALQTRIEALDAWNWEQRVETTLSHLHLDGARTIAELSGGTKKRVALARA
                     LVAVPDVLLLDEPTNHLDLDSIAWLEELLVGFKGSVMVVTHDRAFLDAVATRIVELDR
                     GVLRSYPGAFSAYEARKVDELAAEAQASARADKLLAQEEVWVRKGVEARRTRSVGRVQ
                     RLQALRAQRVARRESLGRVRLEADSGTPSGKIVAELKHVSMTFPAPPGRPASEAQTIV
                     KDFSATILRGDKVGLIGPNGAGKTTLLKLILGELQPTSGTVRQGTRIEV"
     gene            complement(1190..2140)
                     /gene="gshB"
                     /locus_tag="VF308_10100"
     CDS             complement(1190..2140)
                     /gene="gshB"
                     /locus_tag="VF308_10100"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HEX7437051.1"
                     /translation="MKLLFVADPLETFKTYKDTTFAMMRAAAARGHALFACEPKDLVW
                     ERGGRVGASVRAIALAAPSSAAWFVEAAAPAAMALADADAVLMRKDPPFDSEYFYATH
                     LLSQAEREGARVFNAPRALREHPEKLAILEFPHYIAATIVTRDEAAIKRFHAEQKDIV
                     LKPLDGMGGMGIFRVGPDGLNLGSITETLNRNGTTTVMAQRYLTEITAGDKRILVIDG
                     VPVPHSLARIPQGSEIRGNLAVGGKGVAQPLTARDREIAEAIGPTLAARGLLLVGLDV
                     IGDSLTEINVTSPTGFQEITDQTGFDVATAFVEALERALA"
     gene            complement(2146..4062)
                     /locus_tag="VF308_10105"
     CDS             complement(2146..4062)
                     /locus_tag="VF308_10105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HEX7437052.1"
                     /translation="MAPPVADPHAARATGGGRRSPSAIAALTLGAIGVVYGDIGTSPL
                     YALKEVFGPGRVPLNADNVLGVLSLVFWTLTVVVSIKYVVLILRADNNGEGGLMAMLA
                     LASQAVKDRPALRRRLLLVGIFGTAVFFGDGVITPAISVLSAVEGLEVAAPGLHRFIV
                     PITLVVLTALFMVQRFGTARVGRLFGPITAIWFVVLAAMGLPHVAENPSVLWALSPHH
                     AIGFMLGQPKIALVALGGVVLAVTGAEALYADLGHFGKRPIRLAWFGLAMPALALNYF
                     GQGAMLLAHPEGVKNLFFEMAPSWALYPLIGLATCATVIASQALITAAYSVTKQAIQL
                     GYLPRLRILHTSVEETGQIYLPFVNWSLYVCIVLAIVLFGSSDSLAAAYGIAVTIVML
                     ITTTMTLFVVRYAWKYPWPLVAAATGFFFVVDGVFLAANVVKIFDGGWFPLLIGASMF
                     TLMMTWKQGRRLVSERLRNEAVDLKSFLESVFISPPLRVPGTAVFMVSDQGLTPNALL
                     HNLKHNKVLHEHNLFVTVRHHERPWVPSSERCDLEPLGHDCWQVTLNFGFKDEPDVPS
                     ALEQARARGCVVEDMETSYFLSRDIVIPTLGGGMADWREKLFAGMHRNAAGAADFLRL
                     PTNRVVELGSKVEI"
     gene            complement(4074..5918)
                     /locus_tag="VF308_10110"
     CDS             complement(4074..5918)
                     /locus_tag="VF308_10110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HEX7437053.1"
                     /translation="MTLALAALGIVYGDIGTSPLYVMKTVFDKDAGLPLTEPELVGVL
                     SLILWSLMMVVTLKYVLLIMRADNHGEGGIMALLALAASSVAGRPRLRHFLLLLGVFG
                     AALFYGDGVITPAISVLSAMEGLEVASPRLAPFVVELTVAVLVVLFLIQKHGTAGIGA
                     LFGPIMALWFVVLAVAAIAPIARHPAILAAVNPLEGLGFLVRHGWLAFVALGSVVLAV
                     TGAEALYADMGHFGAGPIRMSWLVLVLPALALNYLGQGALLAAHPEAIANPFFKLFPD
                     WALLPMVVLSAAATVIASQAVISGAYSMTNQAVQLGFLPRMRIEHTSEHEIGQIFVPA
                     VNTALLVAVLAAVLGFRSSTALGAAYGIAVTGTMLITTLLAFFVIRYAWHFNFWLALF
                     ATAFFVAIDLAFFSANLLKIADGGWFPLVIAGLAFTAMATWARGRVLLHERLRADAIE
                     LGPFLASVTADLPMRAPGTAVFMNAIPGLTPTALLHNLKHNHVLHASNLFVTVETLEV
                     PWVSSGDRALIDPIAERCFSILLRFGFKDRIDVPAALSALGHGIEIDPMTTSYFLSRA
                     TVVPTFGTGMASWREKLFANMHRNATAASDFLNLPANRVVELGTKVQI"
BASE COUNT         1036 a         1935 c         2162 g          847 t
ORIGIN      
        1 gacctcgatg cgcgtgccct ggcgcaccgt tcccgaggtc ggctgcagct cgccgaggat
       61 gagcttgaga agcgtcgtct tgccggcgcc gttcgggccg atcagcccga ccttgtcgcc
      121 gcgcaggatg gtcgcggaga agtccttcac gatcgtttgc gcctcgctgg ccgggcggcc
      181 cgggggcgcc gggaacgtca tcgacacgtg cttcagctcg gcgacgatct tgccgctcgg
      241 cgttcccgag tcggcctcga ggcggacgcg gccgagcgac tcgcgccggg cgacacgttg
      301 cgcgcgcaac gcctgcagcc gctggacgcg gccgacgctt ctcgtgcggc gcgcctcgac
      361 gccctttcgc acccagacct cctcctgcgc gagcagcttg tcggcgcgcg cgctcgcctg
      421 cgcctcggcg gcgagctcgt cgaccttcct cgcctcgtag gcgctgaacg cgcccgggta
      481 gctgcgcagg acgccgcgat cgagctcgac gattcgcgtc gcgacggcgt cgaggaaggc
      541 gcggtcgtgg gtcacgacca tgacgctgcc cttgaagccg acgagcagct cctcgagcca
      601 ggcgatcgaa tcgaggtcga ggtgattggt cggctcgtcg aggaggagca cgtccggaac
      661 ggcgacgagg gcgcgcgcga gggcgacacg cttcttcgtt ccgccggaga gctcggcgat
      721 cgtccgcgcg ccgtcgagat ggagatggga cagcgtcgtc tcgacgcgct gttcccagtt
      781 ccacgcatcg agcgcctcga tccgcgtctg cagggcgtcg agatcgacgc cttcggcgtg
      841 ggcctcgtag gcgtcgcgga cgacgcgcgc ttcggcgacg ccttcgccga cggcgtcgaa
      901 caccgtcccc gcatcgtcga actgcggctc ctgcgggacg tagcggatgc gcaggccctg
      961 cgtctgctgg agcaaaccgt cgtcgagctt ctcgagcccg gcgatgatct tcagcagcga
     1021 cgacttgccg gtgccgttcc tgccgatcag gccgatccgc tcgcccggat cgagcgacag
     1081 cgacgcgccg tcgagcaggg cgacgtggcc gtaggcgagg tgagcgttgg agagggacag
     1141 gacggccatg ggcggaagct ggcgccgcgg cgccgatgac ggtttcggct caggcgagcg
     1201 cccgctcgag cgcctcgacg aacgccgtcg cgacgtcgaa gccggtctgg tcggtgatct
     1261 cctgaaagcc ggtcgggctc gtcacgttga tctcggtgag actgtcgccg atgacgtcga
     1321 ggccgaccag caacaggccg cgcgcggcga gcgtcggccc gatcgcttcg gcgatctccc
     1381 ggtcgcgcgc cgtcagcggc tgggcgacgc ctttgccgcc gacggcgagg ttgccgcgga
     1441 tctcgctgcc ctgcggaatg cgcgccagcg aatggggcac cggcacgccg tcgatgacga
     1501 ggatgcgctt gtcgccggcg gtgatctcgg tgaggtagcg ctgcgccatc accgtcgtcg
     1561 tgccgttgcg gttgagcgtc tcggtgatgc tgccgaggtt caggccgtcg gggccgacgc
     1621 ggaagatgcc catgccgccc atgccgtcga gcggcttcag gacgatgtct ttctgttcgg
     1681 cgtggaagcg cttgatcgcc gcctcgtcgc gggtgacgat cgtcgccgcg atgtagtgcg
     1741 ggaactcgag gatggcgagc ttttccggat gctcgcgcag cgcccgcggc gcgttgaaca
     1801 cgcgcgcgcc ttcgcgctcg gcctgcgaga gcaggtgggt cgcgtagaag tactcgctgt
     1861 cgaacggcgg gtccttcctc atcagcaccg cgtcggcatc ggcgagcgcc atcgctgccg
     1921 gcgcggcggc ctcgacgaac caggcggcgc tgctcggcgc cgcgagcgcg atggcgcgaa
     1981 cgctcgcgcc gacgcggccg ccgcgctccc agaccaggtc cttcggctcg caggcgaaga
     2041 gcgcgtggcc gcgcgccgcc gccgcacgca tcatcgcgaa ggtcgtgtcc ttgtaggtct
     2101 tgaaggtctc gagcgggtcg gcgacgaaga gcagcttcat ggggatcaga tctccacctt
     2161 ggagccgagc tcgacgacgc ggttggtcgg caggcgcagg aagtcggccg cccccgccgc
     2221 gttgcggtgc atgccggcga agagcttctc gcgccagtcg gccatgccgc cgccgagcgt
     2281 cgggatgacg atgtcgcgcg acaggaagta cgaggtttcc atgtcctcga cgacgcagcc
     2341 gcgcgcacgc gcctgctcga gtgccgaagg aacgtcgggc tcgtccttga agccgaagtt
     2401 gagcgtcacc tgccagcagt cgtgaccgag cggctcgagg tcgcaccgct ccgacgaggg
     2461 aacccacggg cgctcgtggt ggcgcaccgt gacgaagagg ttgtgctcgt gaagcacctt
     2521 gttgtgcttc aggttgtgca gcagcgcgtt cggcgtgagc ccctggtcgc tgaccatgaa
     2581 cacggccgtt cccgggacgc gcagcggcgg gctgatgaag accgattcga ggaagctctt
     2641 caggtcgacg gcctcgttgc gaagtcgctc cgagacgagc cggcgaccct gcttccacgt
     2701 catcatcagc gtgaacatgg aggcgccgat cagcagaggg aaccagccgc cgtcgaagat
     2761 cttgacgacg ttggctgcga ggaagacacc gtcgacgacg aagaagaagc cggtcgctgc
     2821 ggcgacgagc ggccacgggt acttccatgc atagcgaacg acgaagagcg tcatcgtcgt
     2881 cgtgatcagc atgacgatcg tcaccgcgat gccgtaggcg gcggccaggg agtcgctcga
     2941 gccgaagagg acgatcgcca gcacgatgca aacgtacagg ctccagttga cgaacggcag
     3001 gtagatctgg ccggtctcct cgacggacgt gtgcaggatg cgcaggcgcg gcaggtagcc
     3061 gagctggatc gcctgcttgg tgaccgagta cgcagccgtg atcagcgcct gcgaggcgat
     3121 gaccgtggcg caggtcgcca ggccgatcag cgggtacagc gcccagctcg gcgccatctc
     3181 gaagaacagg ttcttcacgc cttcgggatg cgcgagcagc atcgcgcctt ggccgaaata
     3241 gttcagggcg agcgccggca tagccaggcc gaaccaggcg aggcggatgg gccgcttgcc
     3301 gaagtggccg aggtcggcgt agagtgcctc ggcgccggtc accgcgagca ccacgccgcc
     3361 gagggcgact aaggcgatct tcggctgacc aagcatgaag ccgatcgcgt gatgcgggct
     3421 cagtgcccac agcaccgagg ggttctcggc gacgtgaggc aggcccatcg ccgcgaggac
     3481 cacgaaccag atcgccgtga tcggcccgaa cagccggccg acccgcgcag tgccgaagcg
     3541 ctgcaccatg aacagcgcag tcagcacaac gagcgtgatc ggcacgatga accggtgcag
     3601 gccgggcgca gcgacttcga gtccctcgac cgccgacagg accgagatgg ccggcgtgat
     3661 gacgccatcg ccgaagaaga cggcggtgcc gaagatgccg accaggagaa gccgccgacg
     3721 caacgccggc cggtccttca ccgcctgcga agcgagggcc agcatggcca tcaggccgcc
     3781 ttcgccgttg ttgtcggcgc gcaagatgag gacgacgtac ttgatcgaga cgacgacggt
     3841 gagcgtccag aaaacgagcg agaggacgcc gaggacgttg tcggcgttca agggaacgcg
     3901 acccgggccg aagacttcct tcagcgcata gagcgggctg gtgccgatgt cgccgtagac
     3961 gacgccgatg gcgccgagcg tcagggcggc gatcgccgac ggcgagcgcc ggccgccgcc
     4021 ggtggcacgc gcggcatgcg ggtcggcaac cggcggcgcc acggcggact cgttcaaatc
     4081 tgcaccttcg tgccgagctc gacgacacgg ttcgccggca ggttcaggaa gtccgacgcc
     4141 gccgtcgcgt tgcgatgcat gttcgcgaac agcttctcgc gccaggaggc catgccggtg
     4201 ccgaaggtgg gcaccacggt cgcgcgcgag aggaagtaag aagtggtcat ggggtcgatc
     4261 tcgatgccgt gaccgagagc gctgagcgct gccggcacgt cgatgcgatc cttgaacccg
     4321 aagcgcagga ggatcgagaa gcatcgctcg gcgatcggat cgatcagggc ccggtcgcca
     4381 ctggacaccc atggaacctc gagggtctcg acggtgacga agaggttcga cgcgtgcagg
     4441 acgtggttgt gcttcaggtt gtgcaagagc gccgtcggcg tcaggccggg aatggcgttc
     4501 atgaacacgg ccgtgcccgg ggcccgcatc ggcaggtcgg cggtgacaga ggcaaggaag
     4561 ggaccgagct cgatggcgtc ggcgcgaagg cgctcgtgca gcagcacacg accgcgcgcc
     4621 cacgtcgcca ttgcggtgaa ggcgagcccg gcgatgacca gcgggaacca tccgccatcg
     4681 gcgatcttca agagattggc cgagaagaag gcgaggtcga tggcgacgaa gaacgcggtc
     4741 gcgaagagcg caagccagaa attgaagtgc caggcgtatc ggatcacgaa gaaggcgagg
     4801 agtgtggtga tcagcatggt gcccgtcacg gcgatgccgt acgccgcgcc gagcgcggtc
     4861 gacgaccgaa agccgagcac cgcggcgagc acggcgacga gaagcgcggt gttgacggcc
     4921 ggcacgaaga tctggccgat ctcgtgttcc gaggtgtgct cgatgcgcat gcgcggcaga
     4981 aagccgagct gcacggcctg gttggtcatc gaataggcgc ccgagatcac ggcctgcgag
     5041 gcgatcacgg tcgcggcggc ggagagaacg accatcggca ggagggccca gtccgggaag
     5101 agcttgaaga acggattcgc gatcgcctcc ggatgagccg caagcaaggc gccctgcccc
     5161 aggtagttga gtgccagggc cggcaggacg agaaccagcc acgacatccg gatcggaccg
     5221 gcgccgaaat ggcccatgtc ggcgtagagc gcctcggcgc cggtcacggc gagaaccacc
     5281 gagcccagcg ccacgaaggc cagccagccg tgccggacga gaaagccgag cccctcgagc
     5341 ggattgacgg ccgcgaggat ggccggatgg cgcgcgatcg gtgctatcgc ggccacggcc
     5401 aggaccacga accagagagc catgatcggc ccgaacagcg cgccgatgcc ggcggtgccg
     5461 tgcttctgga tcaggaagag cacgaccagc acggcgacgg tcagctcgac gacgaagggc
     5521 gccaggcgtg gcgaagcgac ctccaggcct tccatcgccg acagcaccga gatggccggc
     5581 gtgatgacgc cgtcgccgta gaagagggcc gccccgaaga cgcccagcag cagcaggaag
     5641 tggcgcagcc gcggtcggcc ggccaccgac gaggccgcga gtgcgagcag cgccatgatg
     5701 ccgccctcgc cgtggttgtc ggcgcgcatg atgagtagca cgtacttcaa cgtcaccacc
     5761 atcatcagcg accacaggat cagcgacagc acgccgacca gctcgggctc ggtaagcggc
     5821 agcccggcgt ccttgtcgaa caccgtcttc atgacgtaga gcgggctcgt cccgatgtcg
     5881 ccgtagacga tgccgagcgc tgccagcgcg agcgttatcg cgccgccatg ccgcggagcc
     5941 tcgccggcgt tcgtttcgtt cggggtgccg gaaggcaggg
//
LOCUS       DASVHM010000540         3332 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_38321, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000540 DASVHM010000000
VERSION     DASVHM010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38321"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..791
                     /locus_tag="VF308_10115"
     CDS             <1..791
                     /locus_tag="VF308_10115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003265837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437054.1"
                     /translation="TLRARHSAMHDKFASNQFGRPLVLESTQTSGDLKGDVYAIVEHP
                     FAMVQQALQAPEHWCDILILHLNVKRCRAGGGTPKMLNLNVGRKFDQPIEDAYQLNFS
                     YSVVAATPEYLQVQLSADEGPLSTKNYRIQVEVVPIDAKRSVIHMSYAYGYGFAARVA
                     MQTYLSTLGSQKVGFTVLERKPDGKPVYQSGVLGLLERNTMRYYLAIDAYLSAYALPV
                     AEQAEWRIREWYASTERYAEQLHEMEQNEYLEMKRKEMRRQQQG"
     gene            complement(817..1458)
                     /locus_tag="VF308_10120"
     CDS             complement(817..1458)
                     /locus_tag="VF308_10120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019428308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacid CoA-transferase subunit B"
                     /protein_id="HEX7437055.1"
                     /translation="MAWTHDQMAARAAQELKDGFYVNLGIGLPTLVANYVPAGIEVWL
                     QSENGMLGIGPFPTEDEVDADLINAGKQTVTTLPGSSIFGSHDSFAMIRGGKINLSIL
                     GAMQVSAKGDLANWMIPGKMVKGMGGAMDLVAGVERVIVLMEHVARKKDGTIDLKILP
                     ACTLPLTGVGVVNRIVTDLAVLDVTDRGLAVLAIADGVSPDELQSKTGVPLLF"
     gene            complement(1460..2251)
                     /locus_tag="VF308_10125"
     CDS             complement(1460..2251)
                     /locus_tag="VF308_10125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit A"
                     /protein_id="HEX7437056.1"
                     /translation="MNKIFPSAAAALAGVVRDGQLMAVGGFGLCGIPEALIEALRDSR
                     VKDLTVISNNAGVDGFGLGKLLETRQIRKMISSYVGENKEFERQYLAGELELEFTPQG
                     TLAEKLRAGGAGIPAFFTRTGVGTLVAEGKESREFDGHTYIMERALLPEVSLVKAQRA
                     DKSGNLVFRRTARNFNPAVAMAGKVTIVEVEEIVETGAIDPDAVHLPGIYVHRIVLNA
                     HPEKRIEKRTLRAAASLATPAGTPAATAAQEAVDAIAKAAEKTGA"
     gene            2331..2738
                     /locus_tag="VF308_10130"
     CDS             2331..2738
                     /locus_tag="VF308_10130"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX7437057.1"
                     /translation="MDAAALQATLDRLAADYVDRLGLRVESVEPGQVTLSLPVSAEIV
                     HAGGVVCGQAIMAAADTAMLVAMIAQLGEFRPMTTVQLQTSFVRPVPKDAASVAIVAR
                     VLRHGKSLSYGDVEFRTADGKLVAHATTTYALL"
     gene            complement(2757..>3332)
                     /locus_tag="VF308_10135"
     CDS             complement(2757..>3332)
                     /locus_tag="VF308_10135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017335715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7437058.1"
                     /translation="RVRSTLGRGSVFTVRLLLPESVENWVPAPLDVPLPHGALAAARG
                     KTVLLVEDNAVNAFISAASLETMGVASVHASNGKEAVDLFQERRFDAVLMDCEMPVMD
                     GFAATRLIRDHEALTEAPRTPIIALTANALSGDREHCLRQGMDDYLSKPIELRQLSLL
                     VAKWLGNQRAAANAESSEPKAQDAVAAARAA"
BASE COUNT          557 a         1097 c         1125 g          553 t
ORIGIN      
        1 ccaccctgcg cgcgcgccac tcggcgatgc acgacaagtt cgccagcaat cagttcggcc
       61 ggcccctggt gctcgagtcg acccagacct cgggcgacct caagggcgac gtctacgcga
      121 tcgtcgagca cccgttcgcg atggtgcagc aggcgctgca agcgcccgag cactggtgcg
      181 acatcctcat cctgcacctg aacgtcaagc gctgccgggc cggcggcggc acgccgaaga
      241 tgctgaacct gaacgtcggc cgcaagttcg accagccgat cgaagacgcc taccagctca
      301 acttcagcta cagcgtcgtc gcggcaacgc ccgagtacct gcaggtgcag ctgagcgccg
      361 acgaaggccc gctcagcacg aagaactacc gcatccaggt cgaggtggtg ccgatcgacg
      421 ccaagcgcag cgtcatccac atgtcgtatg cctacggcta cggcttcgcc gcgcgcgtcg
      481 cgatgcagac ctatttgtcg acgctcggca gccagaaggt cggcttcacc gtgctcgagc
      541 gcaagccaga cggcaagccg gtctaccaga gcggcgtgct cggcctcctc gagcgcaaca
      601 ccatgcgcta ctacctggcg atcgacgcct acctgtcggc gtacgcgctg cccgtggccg
      661 agcaggccga gtggcgaatc cgcgagtggt acgcgagcac cgagcgctac gccgagcagc
      721 tccacgagat ggagcagaac gagtacctcg agatgaagcg caaggagatg cgccgccagc
      781 agcaaggcta gcggcgacac gcgctgcggc gcgcggtcag aacagcagcg gcacgccggt
      841 cttcgactgg agctcgtcgg ggctgacgcc gtcggcgatg gcgagcaccg ccagcccgcg
      901 atcggtgacg tcgagcacgg ccaggtcggt gacgatgcgg ttgacgacgc cgacgccggt
      961 gagcggcaag gtgcacgccg gcaggatctt caggtcgatc gtgccgtcct tcttgcgggc
     1021 gacgtgctcc atcaggacga tcacgcgctc gacgccggcg acgagatcca tcgcgccgcc
     1081 catgcccttg accatcttgc ccgggatcat ccagttggcg aggtcgccct tggcgctgac
     1141 ctgcatcgcg ccgaggatcg aaagattgat cttgccgccg cggatcatcg cgaacgaatc
     1201 gtgcgagccg aagatcgacg agccgggcag cgtcgtcacc gtctgcttgc cggcgttgat
     1261 gaggtcggcg tcgacctcgt cctcggtcgg gaacgggccg atgccgagca tgccgttctc
     1321 gctctgcagc cagacctcga taccggccgg cacgtagttg gcgacgagcg tcggcaagcc
     1381 gatgccgagg ttgacgtaga agccgtcctt cagctcctgg gcggcgcggg ccgccatctg
     1441 gtcgtgcgtc caggccatgt caggctcctg tcttttctgc cgccttggcg atggcgtcga
     1501 ccgcttcctg ggcggccgtg gcggcgggcg ttccggccgg cgtcgcgagg ctggcggccg
     1561 cgcgcagggt gcgcttctcg atccgcttct cggggtgagc gttgaggacg atgcggtgca
     1621 cgtagatccc gggcaggtgc acggcgtcgg ggtcgatcgc gccggtctcg acgatttcct
     1681 cgacctcgac gatcgtgacc ttgccggcca tcgccaccgc cgggttgaag ttgcgcgcgg
     1741 tgcggcgaaa gacgaggttg ccggacttgt cggcgcgctg cgccttcacc agcgagacct
     1801 cgggcagcaa ggcgcgctcc atgatgtagg tgtggccgtc gaactcgcgc gactccttgc
     1861 cctcggcgac cagcgtgccg acgccggtgc gcgtgaagaa cgccgggatc ccggcgccgc
     1921 cggcgcggag cttctcggcg agcgtccctt gcggcgtgaa ctcgagctcg agctcgccgg
     1981 cgaggtactg gcgctcgaac tccttgttct cgccgacgta gctcgagatc atctttctga
     2041 tctggcgcgt ctcgagcagc ttgccgagac cgaagccgtc gacgccggcg ttgttggaga
     2101 tgaccgtcag gtccttgacg cgtgaatcgc gcagcgcctc gatgagcgcc tccggaatgc
     2161 cgcacaggcc gaagccgccg acggccatca gctggccgtc gcgaacgacg ccggccaggg
     2221 cggctgcagc gctcggaaag atcttgttca ttcgccgaat cccttgagtc gaatcgacga
     2281 gattatcagc gcgggcgctg cctagaatgg ccgcagggag atcacggacg atggatgcag
     2341 ccgctttgca ggcgacgctg gacaggctcg ccgccgacta cgtcgatcga ctggggcttc
     2401 gcgtcgagtc ggtcgagccg ggccaggtga cgctgagcct gccggtttcg gccgagatcg
     2461 tccacgccgg cggcgtcgtc tgcggccagg cgatcatggc cgccgccgac acggcgatgc
     2521 tggtggcgat gatcgcgcag ctcggcgagt tcaggccgat gacgacggtg cagctgcaga
     2581 cgagcttcgt gcggccggtg ccgaaggacg cagccagcgt cgccatcgtg gcccgcgttt
     2641 tgcgtcacgg gaagagcttg tcttacggtg atgtcgagtt ccggacggcg gacgggaagc
     2701 tggtggcgca cgcgacgacg acgtacgctt tgctgtagag gctcgccccg aatgacttag
     2761 gctgctcgag ctgcagccac ggcgtcttgc gctttcggct cggaactttc cgcgttggcc
     2821 gctgcgcgct ggttgccgag ccacttggca acaagcaagc tcagctggcg caactcgatg
     2881 ggcttactga ggtagtcgtc catcccttgg cgcaagcaat gctcgcgatc accactgagg
     2941 gcgttggccg taagcgcaat gatcggcgtc cgaggagcct cagtgagcgc ctcatgatcg
     3001 cgaatgagtc tggtcgccgc gaatccgtcc atgactggca tttcgcaatc catcagtacg
     3061 gcatcgaagc gccgctcttg gaacagatcc acggcctctt taccgttgct tgcgtggacc
     3121 gacgcaacac ccatcgtttc cagagacgca gccgagatga aagcattcac cgcgttgtct
     3181 tcgacaagca agaccgtctt gccgcgcgcg gcagcaagcg cgccgtgggg cagcggcacg
     3241 tcgagcggcg cgggcaccca gttctcgaca ctttccggta gcaagaggcg cacagtgaag
     3301 acactgcccc gaccgagggt gctgcgcact cg
//
LOCUS       DASVHM010000541         2969 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_906681, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000541 DASVHM010000000
VERSION     DASVHM010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2969
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_906681"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1140)
                     /locus_tag="VF308_10140"
     CDS             complement(<1..1140)
                     /locus_tag="VF308_10140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019655556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437059.1"
                     /translation="MTQVHPWIKSYPVGVRWDIEIEPGPVQKILDDTAAKWPERPALD
                     FMGKRLSYRELHDHVGRAAKGLQALGVGPGVHVGLYLPNTPHYYIAFFAVLKAGGTVV
                     NYSPLDAAQVLEHKIGDSRTDVMITLDLAALYPQMAAMLGKTRLKRLVVGNMAEMSAQ
                     PDAVAAQMKAGKLTVETGSDAQHVRFAALLDNDGRYQEHAIADPREQIAVLQYTGGTT
                     GQPKGAMLTHANLSAACQQYWATVDSIPPVLVEGQERVLAVLPPFHIYALSVNMLLGI
                     RAAAELILHPRFDAEAVLKEISAKKVTSFPGVPTMFTALLSHPDVAKYDLRSLKYCGS
                     GGAPLPLEVAQRFEQVTGCPLSEGWGMTETSPTGTFTPVYGKRKAN"
     gene            complement(1169..1948)
                     /locus_tag="VF308_10145"
     CDS             complement(1169..1948)
                     /locus_tag="VF308_10145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7437060.1"
                     /translation="MSLAKLLELKGKVALVTGGSRGLGLQMAEVLGELGAKVAITARK
                     QHELDAAAKHLKSLGIEALPVVCDLGDLQAIAPLVDTVLDKLGPIDVLVNNAGTSWGA
                     PTVDHSLDGWNKVMTLNVTALFVLTQEVGRRCMVPRRSGKVINIASIQGLTGTYPEGM
                     PTLAYNASKGAVVNLTRTLAAEWAPLGINVNAIAPGFFPTKMTAPIAAALGKDATAEM
                     APMKKVGGPEDLKGAVALFATEACAFITGQTLAVDGGLTAV"
     gene            complement(1960..>2969)
                     /locus_tag="VF308_10150"
     CDS             complement(1960..>2969)
                     /locus_tag="VF308_10150"
                     /inference="COORDINATES: protein motif:HMM:NF012588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase"
                     /protein_id="HEX7437061.1"
                     /translation="GVAQVPIGLAGPLRIDGEHAKGDFFVPLATSEGTLVASYNRGMR
                     LLSESGGVKTTVVEQSMQRSPVFILDDAKKARDFGDWIKEQFDRIKEVAETTTRSGKL
                     INIGQYAIGPLRNLRFNYTTGDAAGQNMTGKATFAACEWIKKTYPGGANYILSGNMDT
                     DKKHSRANMLLTRGKRVVAECTIRGDLLKSMMGISAKELFWSRQVSNVGAFLAGSANN
                     GAHAANGLTAMFIATGQDVANVSESHAGVTYSQLLDNGDYYWSITLTSLIVATYGGGT
                     GLPTQRECLEMLGCYGKGKADKFAEICAAVVLAGDTSLSSAILAGDWVSSHDELGRNR
                     P"
BASE COUNT          420 a         1001 c         1014 g          534 t
ORIGIN      
        1 gttcgccttg cgcttgccgt agaccggcgt gaaggtgccc gtcggcgacg tttcggtcat
       61 gccccagcct tcgctcaagg ggcagccggt cacctgctcg aaccgctgcg caacctcgag
      121 cggcagcggc gcgccgcccg agccgcagta cttgagcgag cgcaggtcgt acttggcgac
      181 gtcggggtgg ctgagcagcg ccgtgaacat cgtcggcacg ccgggaaagc tcgtcacctt
      241 cttggccgag atctccttca gcacggcctc ggcgtcgaag cgcggatgca ggatcaattc
      301 ggccgcggcg cggatgccga gcagcatgtt gaccgacagc gcgtagatgt ggaacggcgg
      361 cagcacggcc agcacgcgct cctggccctc gacgagcacg ggcggaatgc tatcgaccgt
      421 cgcccagtac tgctggcacg ccgccgagag attggcgtgc gtgagcatcg cgcccttcgg
      481 ctggccggtc gtcccgccgg tgtactgcag gacggcgatc tgctcacgcg ggtcggcgat
      541 cgcatgctcc tggtagcggc cgtcgttgtc gagcagcgcg gcgaagcgga cgtgctgcgc
      601 gtcgctgccg gtctcgaccg tgagcttgcc cgccttcatc tgcgccgcga ccgcgtcggg
      661 ctgtgccgac atctcggcca tgttgccgac gacgagcctt ttcaggcgcg tcttgccgag
      721 catcgccgcc atctgcgggt agagcgccgc gaggtcgagc gtgatcatca cgtcggtgcg
      781 gctgtcgccg atcttgtgct cgagcacctg cgcggcgtcg agcggcgagt agttgacgac
      841 cgtcccgccc gccttcagca cggcgaagaa ggcgatgtag tagtgcggcg tgttcggcag
      901 gtagaggccg acgtggacgc ccgggccgac gccgagcgcc tgcagtccct tggcggcgcg
      961 accgacgtgg tcgtgcagct cgcgatagct gagccgcttg cccatgaagt cgagcgcggg
     1021 acgctccggc cacttcgcgg cggtgtcgtc gaggatcttc tgcaccggcc cgggctcgat
     1081 ctcgatgtcc cagcgcacgc ctacagggta ggacttgatc cagggatgca cttgcgtcat
     1141 gtcgttcctc ctcgcgttcc aacgaaggtc agacggccgt caggccgccg tcgacggcga
     1201 gcgtctggcc ggtgatgaag gcgcacgctt cggtcgcgaa aagcgcgacc gcacctttca
     1261 ggtcttcagg gccgccgacc ttcttcatcg gcgccatctc ggccgtcgcg tccttgccga
     1321 gagctgccgc gatcggcgcc gtcatcttgg tcgggaagaa ccccggtgcg atcgcgttga
     1381 cgttgatgcc gagcggcgcc cactcggcgg cgagcgtgcg cgtcaggttg acgaccgcgc
     1441 ccttgctcgc gttgtaggcc agcgtcggca tgccctcggg gtaggtcccc gtgaggccct
     1501 ggatcgacgc gatgttgatg accttgccgc tcctcctcgg caccatgcag cggcggccga
     1561 cctcctgcgt gaggacgaag agcgccgtca cgttgagcgt catcaccttg ttccagccgt
     1621 cgagcgaatg atcgaccgtc ggcgcgcccc acgacgtgcc ggcgttgttg acgaggacgt
     1681 cgatcggccc gagcttgtcg agcacggtat cgaccagcgg cgcgatcgcc tgcaggtcgc
     1741 ccaggtcgca cacgaccggc agcgcttcga tgccgagcga tttcagatgc ttcgccgccg
     1801 cgtcgagctc gtgctgcttt cgcgccgtga tcgcgacctt cgcgccgagc tcgccgagga
     1861 cttcggccat ctgcaggccg aggccacgcg agccgcccgt gacgagcgcg accttgcctt
     1921 tcaactcgag cagcttcgcg aggctcatgg cacgctccgt cagggccggt tgcggccgag
     1981 ctcgtcgtgg ctcgacaccc agtcgccggc gaggatcgcg ctcgacagcg acgtgtcgcc
     2041 ggcgagcacg accgctgcgc agatctcggc gaacttgtcg gccttgccct tgccgtagca
     2101 gccgagcatc tccaggcact cgcgctgcgt cggcagcccg gtgcccccgc cgtaagtcgc
     2161 gacgatcagc gacgtgagcg tgatcgacca gtagtagtcg ccgttgtcga gcagctgcga
     2221 gtaggtgacc cccgcgtgcg actcggagac gttggcgacg tcctggccgg tcgcgatgaa
     2281 catcgcggtg aggccattcg cggcgtgcgc gccgttgttc gccgagccgg cgaggaaggc
     2341 gccgacattg gagacctggc gcgaccagaa cagctccttc gcgctgattc ccatcatgct
     2401 cttcagcagg tcgcccctga tcgtgcactc ggcgacgacg cgcttgccgc gcgtcagcag
     2461 catgttcgcg cgcgagtgct tcttgtcggt gtccatgttg cccgacagga tgtagttggc
     2521 gccgccgggg tatgtcttct tgatccactc gcacgccgcg aacgtggcct tgccggtcat
     2581 gttctggccg gcggcgtcgc ccgtcgtgta gttgaagcga aggttccgga gcgggccgat
     2641 cgcgtactgg ccgatgttga tcagcttgcc ggagcgggtc gtcgtctcgg cgacctcctt
     2701 gatccggtcg aattgctctt tgatccagtc gccgaagtcg cgcgccttct tggcatcgtc
     2761 gaggatgaag accggcgagc gctgcatgga ctgctcgacg accgtggtct tgacgcctcc
     2821 gctctcgctc agcaggcgca tgccgcggtt gtagctggcg acgagcgttc cctcgctcgt
     2881 cgccagcgga acgaagaagt cgcccttggc gtgctcgcca tcgatgcgca gcggcccggc
     2941 gaggccgatc ggcacctgtg cgacgccca
//
LOCUS       DASVHM010000542         3690 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_111907, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000542 DASVHM010000000
VERSION     DASVHM010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3690
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111907"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..449)
                     /locus_tag="VF308_10155"
     CDS             complement(<1..449)
                     /locus_tag="VF308_10155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007835011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437062.1"
                     /translation="MLINFFFTLRAAKLKVSVKEYLTLLEAIKAGVIDDEEGPSVDRF
                     YYLARAALVKDEAQFDKFDRAFAAYFKGVELLTDFTQEIPLEWLQKKFELELSAEEKA
                     KIEKMGWDELMETLKKRFEEQKKRHEGGSKMIGTGGTSPFGAYGYNP"
     gene            596..910
                     /locus_tag="VF308_10160"
     CDS             596..910
                     /locus_tag="VF308_10160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010101002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-potential iron-sulfur protein"
                     /protein_id="HEX7437063.1"
                     /translation="MMTSRRSFLQLIPAAGAALTIPGVSAQTLPMVDEKDPQAVALGY
                     VADAKRVDKAKFPKYALGQQCTGCQLFQGAATAAAAPCTLFVGKQVAGPGWCSAFVKK
                     AG"
     gene            complement(937..2922)
                     /locus_tag="VF308_10165"
     CDS             complement(937..2922)
                     /locus_tag="VF308_10165"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEX7437064.1"
                     /translation="MKKPFGVEELWQVERIGGVSLAPDGAQAVCSVSTYSMAENKASA
                     GLWLLSTFGGGPRRLTACGDKDGQPAWSPTGERIAFTAKREQQGSKDETPQLYLIATD
                     GGEARRISDFAPGIDAFKWFPDGKRIAFIAWVWPELRGARAQARRFKEWKDRKESGYV
                     TSEAQYRFWDRNLPMGRVAHLHVLDVASGRTTDLFEGSGLELPRTDPDADVFDIAPDG
                     RHIVFAHDPAPQKRLENCKALAELNLRSGRVDTLALDKEWDFTAPRYSPDGLQVAFAA
                     AHTGRRHTMPTQAALLRRGGAWRVLSASWDHSIHTPLRWSRDASALYFSAEDRARCHL
                     YRYAIESGTAEVVTEGGWLHAFDVSGDVVASVADSMRHPSRVHARRGSEAARRLERFN
                     DDLLARHRLAEYEDVVLKGANGEATQMWVVYPPGFDPKKKYPVLHSIHGGPHAVAGDT
                     FHYRWNTQVFAAQGYVVACVNFHGSSGFGYAFLDSITHRWGELELADIEAGTDWLLKH
                     AWADRKRVFAAGGSYGGFMVAWMNGHIKPGRYKAYISHAGCFDWAAMFSDDAYTWHAQ
                     ELGAWYWEDPAKVQSQSPSTFAGAMRTPTLVVHGALDYRVPDQQGLAYYNTLKAKGVD
                     ARLLWFPDENHWILKPRNSKLWYEEFFAWLKRHAPAR"
     gene            complement(2919..3509)
                     /locus_tag="VF308_10170"
     CDS             complement(2919..3509)
                     /locus_tag="VF308_10170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX7437065.1"
                     /translation="MSLAGPVTLRGTHATLEPLAPGHAAELCEAVRNGELWRLWYTSV
                     PSPEGMDAEIARRLALQEASAMLPFTVRDADGRAVGMTTFMNIDPVHRRVEIGSTWYA
                     KRVQRGPLNTECKLMLLTHAFEGLACIAVEFRTHFLNQQSRRAIERLGARLDGILRNH
                     SLASDGTLRDTAVYSIIESEWPTVRTHLRWQLEKPR"
     gene            complement(3515..>3690)
                     /locus_tag="VF308_10175"
     CDS             complement(3515..>3690)
                     /locus_tag="VF308_10175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX7437066.1"
                     /translation="SELLDWLKLLVAEDIPLEALQSKDDKVAVPPLVGALLKNEQDVS
                     LFEKLVFMQRHNR"
BASE COUNT          529 a         1213 c         1285 g          663 t
ORIGIN      
        1 tgcgggttgt agccgtaggc gccgaacggg ctcgtgccgc cggtgccgat catcttgctg
       61 ccgccctcgt ggcgtttctt ctgttcctcg aagcgcttct tcagcgtctc catcagctcg
      121 tcccagccca tcttctcgat cttggccttc tcctcggcgc tgagctcgag ctcgaacttc
      181 ttctgcagcc actcgagcgg gatctcctgg gtgaagtcgg tgagcagctc gacgcccttg
      241 aagtaggccg cgaaggcgcg gtcgaacttg tcgaactgcg cctcgtcctt gaccagcgcg
      301 gcgcgcgcca ggtagtagaa gcggtcgacg ctcggccctt cctcgtcgtc gatgacaccg
      361 gccttgatcg cttcgagcag ggtcaggtat tctttcaccg agaccttgag cttggcggct
      421 cgcagtgtga agaagaagtt gatcagcatg gtgggtgatt ccgcgtccgg attgtcgagc
      481 atagcccggt gcgagggggt atgctcgggt cggcttggcg ggttgacgcc cgccgtgcct
      541 gcccgggtac gccaaatgct ggaggtggtc taatctcaca aatcacgaaa ggctcatcat
      601 gacttcgcgt cgcagttttc ttcaactgat cccggccgcc ggtgccgcgc tcacgatccc
      661 cggggtgtcg gcccagacgc tgccgatggt cgatgaaaag gatccgcagg cggtggcgct
      721 cggctatgtc gccgacgcga agcgcgtcga caaggccaag ttccccaaat acgcgctcgg
      781 ccagcagtgc accgggtgcc agctcttcca gggcgccgcg accgcggcgg cggcgccttg
      841 cacgctcttc gtcggcaagc aggtcgccgg tccaggctgg tgcagcgcct tcgtgaagaa
      901 ggcgggctga tggcgggctg atgagaccgg ccggcctcag cgagccggcg catggcgctt
      961 cagccaggcg aagaattcct cgtaccagag cttggagttg cgcggcttga ggatccagtg
     1021 gttctcgtcg gggaaccaga gcagccgcgc gtccactccc ttggccttga gggtgttgta
     1081 gtaggccagg ccctgctggt cgggcacgcg gtagtcgagc gcgccgtgga ccacgagcgt
     1141 gggcgtgcgc atcgcccccg cgaaggtgct cgggctctgc gattgcacct tggccggatc
     1201 ctcccagtac caggcgccga gttcctgcgc gtgccaggtg taggcatcgt cgctgaacat
     1261 cgcggcccag tcgaagcagc cggcgtgact gatgtaggct ttgtagcgcc cgggcttgat
     1321 gtgcccgttc atccacgcga ccatgaagcc gccgtagctg ccgccggccg cgaacacgcg
     1381 cttcctgtcc gcccacgcgt gcttgagcag ccagtcggtg ccggcctcga tgtcggcgag
     1441 ttcgagttcg ccccaacggt gcgtgatgct gtcgaggaac gcgtagccga agccgctcga
     1501 gccgtggaag ttgacgcagg cgacgacata gccctgggcg gcgaagacct gggtgttcca
     1561 ccgatagtgg aaagtgtctc cggcgaccgc gtgggggccg ccatggatgc tgtgcaggac
     1621 cgggtacttc ttcttcgggt cgaagccggg cgggtacacg acccacatct gcgttgcttc
     1681 gccgttcgca cccttgagca ccacgtcctc gtactcggcg aggcggtgcc gggcgagcag
     1741 gtcgtcgttg aagcgttcga ggcgacgcgc cgcctcgctg ccgcgccggg cgtgcactcg
     1801 cgacgggtgg cgcatcgaat cggcgacgct cgcgaccacg tcgccgctca cgtcgaaggc
     1861 gtgcagccag ccgccttcgg tcacgacctc ggcggtgccg ctttcgatcg cgtagcggta
     1921 gagatggcag cgggcccggt cttcggcgct aaagtagagc gcgctcgcgt cgcgcgacca
     1981 gcgcagcggc gtgtggatcg aatggtccca gctcgcgctg agcacgcgcc aggcgccgcc
     2041 gcgccgcagc agcgccgcct gcgtcggcat cgtgtgcctg cgtcccgtgt gggccgcggc
     2101 gaaagccacc tgcagaccgt ccgggctgta gcgcggggcg gtgaaatccc attccttgtc
     2161 gagcgcgagc gtgtcgaccc tgccgctgcg caggttcagt tcggcgagcg ccttgcaatt
     2221 ctcgaggcgc ttctgcggcg ccgggtcgtg cgcgaagacg atgtgccggc cgtcgggggc
     2281 gatgtcgaac acgtccgcgt cggggtcggt gcggggcagc tcgagtccgc tgccttcgaa
     2341 gaggtcggtc gtgcgcccgc tcgcgacgtc gagcacgtgc aggtgcgcga cccggcccat
     2401 cggcagattg cggtcccaga agcggtactg ggcctcgctg gtgacgtagc cgctctcctt
     2461 gcggtccttc cattccttga aacgccgggc ctgggccctg gcgccgcgca gttcgggcca
     2521 gacccaggcg atgaacgcga tgcgcttgcc gtcggggaac cacttgaagg cgtcgatgcc
     2581 cggcgcgaaa tcgctgatgc ggcgcgcctc gccgccatcg gtcgcgatca ggtagagctg
     2641 cggcgtctcg tccttcgagc cctgctgctc gcgcttggcg gtgaaggcga tgcgctcgcc
     2701 ggtcggcgac cacgccggct ggccgtcctt gtcgccacac gcggtgagcc ggcgcggccc
     2761 gccgccgaag gtggagagga gccagaggcc ggcgctggcc ttgttctcgg ccatcgagta
     2821 cgtgctcacc gagcagaccg cctgggcccc gtcgggtgcc agcgacacgc cgccgatgcg
     2881 ctcgacctgc cagagctcct cgacgccgaa gggcttcttc aacggggctt ctcgagctgc
     2941 cagcgcaggt gcgttctcac ggtcggccat tcgctttcga tgatgctgta gacggccgtg
     3001 tcgcgcagcg ttccatcgct ggcgaggctg tggttgcgca agatgccgtc gagcctggca
     3061 cccagccgtt cgatggcacg ccggctctgc tggttgagga agtgggtgcg gaactcgacc
     3121 gcgatgcagg cgagtccctc gaacgcgtgc gtgagcagca tcagcttgca ctcggtattg
     3181 agcgggccgc gctgcacccg cttcgcatac caggtgctgc cgatctcgac gcggcgatgg
     3241 accggatcga tgttcatgaa ggtcgtcatg ccgaccgccc ggccgtcggc gtcacgcacg
     3301 gtgaaaggca gcatggcgct cgcttcctgc agcgcgaggc gccgggcgat ctccgcgtcc
     3361 atgccctcgg gggagggcac gctcgtgtac cagagccgcc agagctcgcc gttgcgaacg
     3421 gcctcgcaca gttcggccgc gtgtccgggc gcgagcggct cgagcgtcgc gtgcgtcccg
     3481 cgcagcgtga ccggcccggc caagctcatc gcgatcaccg gttgtggcgt tgcatgaaga
     3541 cgagcttttc gaacagcgag acgtcttgct cgttcttcag gagcgcgccg acgagcggcg
     3601 gcacggcgac cttgtcgtcc ttgctctgca gcgcctcgag cggaatatct tcggcgacga
     3661 gaagcttgag ccagtcgagg agctccgacg
//
LOCUS       DASVHM010000543         4231 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_832867, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000543 DASVHM010000000
VERSION     DASVHM010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4231
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_832867"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..906
                     /locus_tag="VF308_10180"
     CDS             <1..906
                     /locus_tag="VF308_10180"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013516945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEX7437067.1"
                     /translation="LVVVVGPCSIHDHDQALEYGQRLKAVADELQDDLLIVMRTYFEK
                     PRTTVGWKGYINDPHLDGSFAINEGLERARHLLLELTVLGLPTGTEFLDLLSPQFIAD
                     LIAWGAIGARTTESQSHRQLASGLSCPVGFKNGTEGSIKVAADAILAARAPHAFMGMT
                     KMGMAAIFETRGNDDCHVILRGGRTPNYEAAQVAANCDALRAAGLREQLMIDVSHGNS
                     AKDHRRQITVAHDVAGQVAAGDRRIIGVMIESHLEEGRQELVRGVAPRHGVSITDACI
                     GFAQTVPVLEALAAAVRVRRSRATR"
     gene            969..1892
                     /locus_tag="VF308_10185"
     CDS             969..1892
                     /locus_tag="VF308_10185"
                     /inference="COORDINATES: protein motif:HMM:NF039822.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5666 domain-containing protein"
                     /protein_id="HEX7437068.1"
                     /translation="MNHSLGLSVHAGRARPSDAFSTPADSFKVAAIAINAASAEFVNG
                     TKADLANGKWVELRGTLDLTSGAISASRVTFRKLEAGKVDVSLKGAIMDFVDLGHFKV
                     RGVPATTDANTVTNASCTAALAQGSLVAISGAVTGFTVLAKTIDCLVSADGVSIEGKG
                     VVLTVDPVAKMFTVGGSLFSKVTLSCDATTEFAKGTSASDLKVGVQVEVKGSVAGGVV
                     SVTRIGLAEVLSTSPGAGVAVLKTEGVASKVTLTGGLVSSFEIDGLAFTVTGESTLRT
                     LDGAFVDGARIHVLFKKVGSTNIVLLVNTKH"
     gene            complement(1946..2881)
                     /locus_tag="VF308_10190"
     CDS             complement(1946..2881)
                     /locus_tag="VF308_10190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine dehydratase"
                     /protein_id="HEX7437069.1"
                     /translation="MELTRIDILDARRRIGADIRHTPLLRLRGSELGIDCAELWLKLE
                     QLQVGGSFKARGMFNRMRANTIPAAGVVIASGGNAGIAAACAAQALGVRCEVFVPDVT
                     SQAKRAKLAELGAAVSVGGRGYADALRASLERQAESGALLMHAYDQLEVVAGAGTLAA
                     EVEDDAGVPDRALVSVGGGGLIAGVAAWFEGRCRIEALEPELAPTLFRAREAGRPVDV
                     DVAGIAADSLGARRVGAIAWDVTQRHVAAAHLVGEEAIRTAQLALWTSLRLAVEPAAA
                     LGLAALASGTVRPGPDERVLLVICGANLDPATLAS"
     gene            2960..4147
                     /gene="argE"
                     /locus_tag="VF308_10195"
     CDS             2960..4147
                     /gene="argE"
                     /locus_tag="VF308_10195"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007835430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008777 - acetylornithine deacetylase
                     activity [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HEX7437070.1"
                     /translation="MDMHALPSARALELARSLVQMNTVSHESNLELIHFIRDELAQHG
                     IESRLTFDAERRKANLFATLGEGKPAGVILSGHTDTVPWDGQDWSFDPLGAELRDRRL
                     YGRGSADMKSFIGLAVAQVPAFLSADLPFAVHLAFSFDEEVGCFGARELIADLRESGV
                     RPLACIIGEPTGMVPALAHKGVYRWRCCVKGRATHSSLTPEAVNAIEVSARVIGKLTD
                     MSERWRDGEARYEGFDVPYSTGSVGVIEGGIADNVVPEDCRFNYEFRNLPGADAALMQ
                     REVQAYAAGLEPRMRAVDPASGIRFESIAAVPAFLARSDDPAVLLAQGLAATDLTTLV
                     AFGTEAGLFQGAGIPTVVCGPGHIAQAHQADEYVSLAELAACERFLRGLLDANAAALV
                     RPR"
BASE COUNT          664 a         1458 c         1462 g          647 t
ORIGIN      
        1 ctcgtcgtcg tcgtcggccc ctgctcgatt cacgaccacg accaggcgct cgaatacggc
       61 cagcgcctga aggccgtggc cgatgaactg caggacgatt tgctgatcgt gatgcgcacc
      121 tacttcgaga agccgcgcac gacggtgggc tggaagggct acatcaacga cccgcacctc
      181 gatggcagtt tcgcgatcaa cgaagggctg gaacgggcgc ggcacctgct gctggaactg
      241 acggtgctcg gcctgcccac gggcacggag ttcctcgatc tgttgagccc gcaattcatt
      301 gccgacctca tcgcctgggg cgccatcggc gcacgcacga cggagagcca gagccatcgc
      361 cagctggcgt cgggcctgag ctgcccggtg ggtttcaaga acggcaccga gggcagcatc
      421 aaggtcgcgg ccgatgcgat cctcgccgcg cgggcaccgc atgccttcat gggcatgacc
      481 aagatgggca tggccgccat cttcgaaacg cgcggcaacg acgactgcca cgtcatcctg
      541 cgcggcggca ggacgcccaa ctacgaggca gcgcaggtgg ccgcgaattg cgacgcgctg
      601 cgtgccgccg gtttgcgcga gcagttgatg atcgacgtct cgcacggcaa cagcgccaag
      661 gaccaccggc gccagatcac ggtcgcgcac gatgtggccg ggcaggtcgc ggccggcgat
      721 cggcgaatca tcggcgtcat gatcgaaagc cacctcgagg aagggcgcca ggaactggtc
      781 cggggcgtgg cgccgaggca cggcgtgtcg atcaccgatg cgtgcatcgg gttcgctcag
      841 acggtgccgg tgttggaagc gctggcggcg gcggtgcggg tgcggcggag tcgggcgacg
      901 cgctgagacg ttcggcgaaa gcgctccaga gcctcagaac tgctcggatg ctgttgtgcc
      961 cccgaccctt gaaccactcg ttgggattgt cggtccatgc cggtcgcgcg cgcccgagtg
     1021 acgccttcag cacgccggcc gacagcttca aggtggccgc gatcgccatc aacgcggcat
     1081 cggcggaatt cgtcaacggc accaaggccg acctcgccaa cggaaaatgg gtcgaactgc
     1141 gcggcaccct cgacctgacg agcggcgcca tcagcgcgtc ccgcgtgacc tttcgcaagc
     1201 tcgaggccgg caaggtcgat gtatcgctga agggcgcgat catggacttc gtcgacctgg
     1261 gccacttcaa ggtgcgcgga gtgccggcca ccaccgatgc gaacaccgtc accaacgcgt
     1321 cctgcaccgc ggcgctggcc caggggtcgc tcgtcgcgat cagtggagcg gtgacgggct
     1381 tcaccgtgct tgcgaagacg atcgactgtc tcgtctccgc ggacggcgtc tccatcgaag
     1441 gcaagggcgt cgtgctgacg gtcgatccgg tcgcgaagat gttcaccgtg gggggatcgc
     1501 tcttcagcaa ggtgacgttg agctgcgacg ccacgaccga gttcgcgaag ggcacgagcg
     1561 catccgatct gaaggtcggc gttcaggtcg aggtgaaagg cagcgtcgcc ggcggggtcg
     1621 tgagcgtcac ccgcatcggc ctggcagagg tgctgagcac ctcccccggc gccggcgtgg
     1681 ctgtgctgaa aaccgagggc gtcgcatcga aggtgaccct gacgggtggc ctcgtctcga
     1741 gtttcgagat cgatgggctg gccttcacgg tcaccggcga aagcacgctg cgcacactcg
     1801 acggcgcttt cgtcgacggc gcgaggattc atgtcctctt caagaaggtc ggctcgacca
     1861 acatcgtgct gctcgtcaac acgaagcatt gatcggcgcg cgagaactcg caccgccccg
     1921 ttcttcgccc gcctgcgggc cggcgtcagc ttgccagcgt cgccggatcc aggttcgcgc
     1981 cgcagatcac gagcaggacc ctttcatccg gccccggccg gaccgtaccg ctcgcgagag
     2041 ccgccagccc cagcgcggcg gccggctcga ccgcaagccg caggctcgtc cacagcgcga
     2101 gctgggcggt gcggatcgct tcttcgccga cgaggtgcgc ggccgcgacg tggcgctgcg
     2161 tgacgtccca ggcgatggcg ccgacgcggc gcgcaccgag cgaatcggcg gcgatgccgg
     2221 cgacatcgac atcgacgggc ctgcctgcct cgcgcgcccg aaagagcgtc ggcgcgagct
     2281 ccggctcgag cgcttcgatg cggcagcggc cttcgaacca ggccgccacg ccggcgatca
     2341 ggccgccgcc gccgacgctg acgagtgccc ggtccggcac gcccgcgtcg tcttcgactt
     2401 cggctgccag cgtgcccgcg ccggccacca cttcgagctg gtcgtaggca tgcatcagga
     2461 gcgcgccgct ttcggcctgg cgctcgagac ttgcgcgcag ggcgtcggcg tagccgcgcc
     2521 cgccgacgct gaccgccgcg ccgagttcgg cgagcttggc gcgcttggcc tggctcgtca
     2581 catcgggcac gaagacctcg caacgcacgc cgagcgcctg cgcggcacac gctgccgcga
     2641 tgccggcatt gccgcccgat gcgatgacga ccccggcggc cgggatcgtg ttggcgcgca
     2701 tccggttgaa catgccgcgc gccttgaaac taccacccac ctgcagctgc tcgagcttca
     2761 accagagctc ggcgcaatcg atgccgagct cgctgccgcg caggcgcagc agcggcgtgt
     2821 ggcggatgtc ggcgccgatg cgccgccgcg cgtcgaggat gtcgatgcgg gtgagttcga
     2881 tcacaggcga gcggtgcgtt gagaagctcg gcgggcagcg gcgatcgtca agggtagcgc
     2941 aagccgctac agtgcggcga tggacatgca tgccttgccc tcggcgcgcg ccctcgagct
     3001 ggcgcgatcc ctggtgcaga tgaacaccgt cagtcacgaa tcgaacctcg agctgatcca
     3061 cttcattcgc gacgagctcg cgcagcatgg gatcgagagc cggctcacct tcgatgccga
     3121 acgccgcaag gccaatctct tcgccacgct gggcgaaggc aagccggccg gtgtgatcct
     3181 ttcgggccac accgacacgg tgccgtggga cggtcaggac tggtcgttcg acccgctcgg
     3241 cgccgaactc cgcgaccgcc gcctctacgg tcgcggcagc gccgacatga agagcttcat
     3301 cggcctggcc gtcgcgcagg tgccggcgtt cctttcggcc gaccttccgt tcgccgtgca
     3361 tctcgcgttc agcttcgacg aggaggtcgg ctgcttcggc gcgcgcgagc tgatcgccga
     3421 cctgcgcgag agcggcgtgc ggccgctcgc ctgcatcatc ggcgagccga ccggcatggt
     3481 cccggcgctc gctcacaagg gcgtctatcg ctggcgctgc tgcgtgaagg ggcgtgcgac
     3541 gcattcgtcg ctcacgcccg aggcggtcaa tgcgatcgag gtcagcgcgc gcgtgatcgg
     3601 caagctcacc gacatgtccg agcgttggcg cgatggcgaa gcgcgctacg aaggcttcga
     3661 cgtgccctac agcaccggtt cggtcggtgt catcgagggc ggcatcgccg acaacgtcgt
     3721 ccccgaggac tgtcgcttca actatgaatt ccgcaacctg ccgggcgccg acgcggcgct
     3781 gatgcagcgc gaggtgcagg cctacgcggc aggactcgag ccgcgcatgc gcgcggtcga
     3841 tccggccagc ggcatccgct tcgaatcgat tgcggccgtg ccggcgttcc tcgcccggtc
     3901 ggacgatccg gcggtgctcc ttgcgcaagg tctcgccgcc accgatctca cgacgctcgt
     3961 ggcgttcggc accgaggccg gtcttttcca gggcgcgggg atcccgaccg tggtctgcgg
     4021 gcccggccat atcgcccagg cgcaccaggc cgacgagtac gtgtcgctcg ccgagctcgc
     4081 cgcgtgcgag cgcttcctgc gtggcctgct cgacgccaac gcggcagcgc tcgtgcgccc
     4141 gcgctgagcc gacccgcggc tcccgggcat ccgaccctcg gttcgaggat gacgccagaa
     4201 gcgacggcct cgaggcatga acccgggcag c
//
LOCUS       DASVHM010000544         4009 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_978921, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000544 DASVHM010000000
VERSION     DASVHM010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4009
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_978921"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1878)
                     /locus_tag="VF308_10200"
     CDS             complement(<1..1878)
                     /locus_tag="VF308_10200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA
                     hydratase family protein"
                     /protein_id="HEX7437071.1"
                     /translation="MQQRFNVRKVAVLGAGVMGAQIAAHLVNVRVPVILFDLPAKEGP
                     KNGIVAKAVENLKKLKPSPLGVAEDSGLIEQANYEEHLDRLKECDLVIEAIAERMDWK
                     LDLYTKVAPAIAPHAIVASNTSGLSITKLSEVLPEEIRPRFCGIHFFNPPRYMALVEL
                     IATPTTDPKILDELEAFVTTALGKSVVRAKDTPNFIANRVGIAGMLATMKEAETYGLS
                     YDVVDDLTGKKLGRASSGTFRTADVVGLDTMAHVIKTLQDNLGPEQGNDPFFASFATP
                     PVLQKLLDAGALGQKTGAGFYKKVGKDILRYDPATGDYVPGGRKADEVVARILKKPPA
                     ERLKLLHDSKNPQAQFLWAILRDSFHYAAVHLADVAESARDIDFAMRWGFGTSQGPFE
                     LWQAAGWSQVAQWVKEDIEAGKALSSAPLPSWVFDGLGSADAGVHRPEGSYSAARARF
                     VAPSTLPVYRRQAFRDSVHGADATTPLKSGTEVFKNDEVRVWTLDGEVLIASITAKLH
                     LISPAVIEGLLKAVDLAEASYQGLVVWSPDDVFSAGANLEALMPVFMKSGGKGILPEV
                     KKLQDAMLRIRYASVPVVAAVRGIALGGGNEIALHCSRRVAAMESYMGFVEVGVGLIP
                     AG"
     gene            complement(1893..2351)
                     /locus_tag="VF308_10205"
     CDS             complement(1893..2351)
                     /locus_tag="VF308_10205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HEX7437072.1"
                     /translation="MILTQKNLAVACLLAGAAFAAAAQVTSPAGVWRTIDDNTKKDKS
                     LVRIVEANGVYTGKVEKFLDPESPKDAVCKDCSDDRKDKPILGLTIIRNMKQSADDKA
                     VFEGGDILDPNNGKVYKSKMKLVDNGTKLEVRGFVGISLLGRTQTWVRAE"
     gene            complement(2365..>4009)
                     /locus_tag="VF308_10210"
     CDS             complement(2365..>4009)
                     /locus_tag="VF308_10210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HEX7437073.1"
                     /translation="ASEVLAPLNVVGDREGCVLDQATHEVKVPTGFKEAYAKYVEGGW
                     PALSCDPAFGGQGLPHVVSQCLFEMLNSANQAWTMYPGLSHGAYECLRAFGTDEQKQS
                     YLGKLTSGRWTGTMCLTEPQCGTDLGLLRTKAEPQADGSYRLTGNKIFISAGEHDMAE
                     NIVHLVLARLPDAPTGSKGISLFVVPKWNVKADGSLGERNGIWCGGLEHKMGIHGNAT
                     AQIVLDGAVGSLVGQPNKGLQAMFVMMNAARLGVGMQSLGLTEVAYQNAAVYAKERLQ
                     MRSLSGPKAPDKPADPIIVHPDVRKMLLTARAFAEGGRALAVFTTLLLDRELASDDED
                     VKKECADLVALLTPIVKAFFTDNAWIATSHCLQVYGGHGYIRESGMEQFVRDSRINMI
                     YEGTNTIQSLDLLGRKVLADNGAKLKKFGKLVEAFVEEEGTNEAMQEFVNPLADLGGK
                     VTKLTTEIGMKAFKNPDEVGAAAVDYLRVCGHLVFAYLWARMAKVALDKASSGDGFYV
                     AKLATARFYFAKLLPETAGLIGSVRAGAAPMMDFDAALF"
BASE COUNT          573 a         1334 c         1378 g          724 t
ORIGIN      
        1 gcccgccggg atcaggccga cgccgacctc gacgaagccc atgtagcttt ccatcgcggc
       61 gacgcgacgc gagcagtgca gagcgatctc gttgccgccg ccgagggcga tgccgcgaac
      121 ggccgcgacg accgggacgc tcgcgtagcg gattcgcagc atcgcgtcct gcagcttctt
      181 gacctcgggc aggatgccct tgccgccgct cttcatgaac accggcatga gcgcctcgag
      241 gttggcgccg gccgagaaga cgtcgtcggg cgaccagacg acgaggccct ggtacgaggc
      301 ttcggcgaga tcgaccgcct tcagcaggcc ctcgatcacg gccgggctga tgaggtggag
      361 cttggcggtg atgctcgcga tcagcacctc gccgtcgagc gtccagacac ggacctcgtc
      421 gttcttgaag acctcggtgc cggacttcag cggggtcgtg gcgtcggcgc cgtggacgct
      481 gtcgcggaac gcctggcgcc ggtagaccgg cagcgtgctc ggcgccacga agcgggcgcg
      541 ggcggcgctg tacgagccct ccggccgatg cacgccggcg tcggcgctgc cgagcccgtc
      601 gaacacccac gacggcagcg gcgcgctgct gagcgccttg ccggcctcga tgtcttcctt
      661 cacccactgt gcgacctgcg accagccggc cgcctgccag agctcgaacg gcccctggct
      721 cgtgccgaag ccccagcgca tcgcgaagtc gatgtcgcgc gcgctctcgg cgacgtcggc
      781 gaggtggacc gcggcgtagt ggaagctgtc gcgcaggatc gcccacagga actgcgcctg
      841 cgggttcttc gagtcgtgca ggagcttcag ccgctcggcc ggcggcttct tgaggatgcg
      901 ggcgacgacc tcgtcggcct tgcggccgcc gggaacgtag tcgccggtcg ccgggtcgta
      961 gcgcaggatg tccttgccga ccttcttgta gaagccggcg cccgtcttct ggccgagcgc
     1021 gccggcatcg agcagcttct gcagcaccgg cggcgtcgcg aagctggcga agaacggatc
     1081 gttgccctgc tccgggccga ggttgtcctg cagcgtcttg atgacgtgcg ccatcgtgtc
     1141 gaggccgacg acgtcggcgg tgcggaacgt ccccgagctc gcccggccga gcttcttgcc
     1201 ggtgaggtcg tcgacgacgt cgtagctgag gccgtaggtc tcggcctcct tcatcgtcgc
     1261 cagcatgccg gcgatgccga cgcggttggc gatgaagttg ggcgtgtcct tggcgcggac
     1321 gaccgacttg ccgagcgccg tcgtcacgaa ggcttcgagc tcgtcgagga tcttcggatc
     1381 ggtcgtcggc gtcgcgatca gctcgaccag cgccatgtag cgcggcgggt tgaagaagtg
     1441 gatgccgcag aagcgcggcc tgatctcctc gggcagcacc tcggagagct tggtgatgct
     1501 gagccccgag gtgttgctcg cgacgatcgc gtgcggcgcg atcgccggcg cgaccttggt
     1561 gtagaggtcg agcttccagt ccatgcgctc ggcgatcgcc tcgatgacga ggtcgcattc
     1621 cttcagcctg tcgaggtgct cctcgtagtt agcctgctcg atcaggcctg agtcctcggc
     1681 gacgccgagc ggcgaaggct tgagtttctt caggttctcg accgccttgg cgacgatgcc
     1741 gttcttgggg ccctccttgg cgggcaggtc gaacaggatc accggcacgc gcacgttgac
     1801 gaggtgggcg gcgatctgcg cgcccatgac gccggcgccg aggacggcga ccttcctgac
     1861 gttgaatcgt tgttgcattg ctgctcccgt gctcactcgg cgcgaaccca cgtctgcgtg
     1921 cggcctagca gcgagatgcc gacgaagccg cgcacctcca gcttcgtgcc gttgtcgacc
     1981 agtttcatct tcgacttgta gaccttgccg ttgttcgggt cgaggatgtc gccgccctcg
     2041 aagaccgcct tgtcgtcggc gctctgcttc atgttgcgga tgatggtcag gccgaggatg
     2101 ggcttgtcct tgcggtcgtc gctgcagtcc ttgcagaccg cgtccttcgg cgactcgggg
     2161 tcgaggaact tctcgacctt gccggtgtag acgccgttcg cctcgacgat gcggacgagc
     2221 gacttgtcct tcttggtgtt gtcgtcgatc gtgcgccaga cgccggcggg cgacgtcacc
     2281 tgcgcggcgg cagcgaaggc ggcgccggcg agcaggcagg cgacggcgag gttcttctgg
     2341 gtgaggatca tggttccggt ccgatcagaa aagagccgca tcgaagtcca tcatcggcgc
     2401 cgccccggcc cggacgctgc cgatgagccc cgccgtctcc ggcagcagct tggcgaaata
     2461 gaagcgcgcg gtggcgagct tggcgacgta gaacccgtcg cccgacgacg ccttgtcgag
     2521 cgccaccttg gccatcctcg cccacaggta ggcgaagacg aggtggccgc agacacgcag
     2581 gtagtcgacc gccgcggcgc caacctcgtc ggggttcttg aacgccttca tgccgatctc
     2641 ggtggtgagc ttggtgacct tgccgccgag gtcggcgagc gggttgacga actcctgcat
     2701 cgcctcgttg gtcccttcct cctcgacgaa ggcctcgacc agcttgccga acttcttcag
     2761 tttcgcaccg ttgtcggcga gcaccttcct gcccagcagg tcgagcgact ggatcgtgtt
     2821 cgtgccctcg tagatcatgt tgatgcgcga gtcgcgcacg aactgctcca tccccgactc
     2881 gcggatatag ccgtggccgc cgtagacctg caggcagtgc gaggtcgcga tccaggcgtt
     2941 gtcggtgaag aacgccttga cgatcggcgt cagcagcgcg accaggtcgg cgcattcctt
     3001 cttcacgtcc tcgtcgtcgc tcgccagctc gcggtcgagg agcagcgtcg tgaacaccgc
     3061 cagcgccctg cccccttccg cgaaagcgcg cgcggtgagc agcatcttcc tgacgtcggg
     3121 gtggacgatg atcgggtcgg ccggcttgtc gggtgccttc gggcccgaga gcgagcgcat
     3181 ctgcagccgc tccttggcgt agacggcagc gttctgatag gccacttcgg tgagcccgag
     3241 cgactgcatt cccacgccca ggcgcgccgc gttcatcatc acgaacatcg cctgcagacc
     3301 cttgttcggc tggccgacga ggctgcccac ggcgccgtcg aggacgatct gcgcggtcgc
     3361 gttgccgtgg attcccatct tgtgctcgag gccgccgcac cagatgccgt tcctctcgcc
     3421 gagcgacccg tcggccttca cgttccactt cggcacgacg aagagcgaga tgcccttcga
     3481 tcccgtcggc gcatcgggca ggcgggcgag gacgaggtgg acgatgttct cggccatgtc
     3541 gtgctcgccg gcggagatga agatcttgtt gccggtgagg cgatacgagc cgtcggcctg
     3601 cggctcggcc ttggtgcgga gcaggccgag gtcggttccg cactgcggct cggtcaggca
     3661 catggtgccg gtccagcggc cgctcgtcag cttgcccaga taactctgct tctgctcgtc
     3721 ggtgccgaaa gcgcgcaggc actcgtaggc gccgtgcgag aggccgggat acatcgtcca
     3781 tgcctggttc gccgagttga gcatctcgaa caggcactgg ctgacgacgt gcggcaagcc
     3841 ctggccgccg aacgccgggt cgcagctgag cgccggccag ccgccctcga cgtacttcgc
     3901 gtaggcctcc ttgaagccgg tcggcacctt gacctcgtgg gtcgcctggt cgaggacgca
     3961 gccttcgcgg tcgccgacga cgttgagcgg ggcgagcacc tcgctcgcg
//
LOCUS       DASVHM010000545         1529 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_38636, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000545 DASVHM010000000
VERSION     DASVHM010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38636"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1529
                     /locus_tag="VF308_10215"
     CDS             <1..>1529
                     /locus_tag="VF308_10215"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7437074.1"
                     /translation="LVRAIQAALGAMSCVWLCVAGRRFFGDRAGLAAGALLAIYPPAI
                     FFDGLIQKSSLDLVLMTLLLALLGEFLSRPHWKWLIAAGLVMGALTLNRENARVLYPI
                     VALWLLAYFRETPLKTRAAWVGIFTAAVAALLLPVGLRNYHVSGNFLISTSQLGPNFY
                     IGNHAGAHGGYEALVADHGNAAFERDDATRLAEDASGRRLSPAEVSDYWLGRALRDIR
                     SEPSAWLALAGRKLLLTINVVEAVDTESIEVHSDYSPVLRGLLWFNFGIIFPLAALGA
                     WQTRDQWRRLAVLYATLVGLTLSVAIFYVLARYRHPIVPVVLLFAGAAVSAIPRAAAA
                     MADDWQRWIPGLLLALVTAAVVNVPMKTSYDETRLNLGSELIRTGRPDEAIPLLEKAA
                     DASPDYAPPHFDLGLALDATGQTERAIGEFSAAVRLRPDFFEAQENLAIALWHASRRQ
                     DAILHYQEAVRLRPDDPVAQNNLAAALLQEQRIPEAVPHFEAALKLRPDYSEAHSNLA
                     L"
BASE COUNT          215 a          526 c          505 g          283 t
ORIGIN      
        1 cctggtgcgg gcgatccagg cggcgctcgg cgcgatgtcg tgcgtgtggc tctgcgtggc
       61 tgggcggcgg ttcttcggtg accgcgcggg actcgccgcc ggcgcgctgc tcgcgatcta
      121 tccgccggcg atattcttcg acggcctgat ccagaaatcg tccctcgatc tcgttctgat
      181 gacgctgctc ctggcgctcc tcggcgagtt tctgtcgcgc ccgcattgga aatggctcat
      241 cgccgccggc ctggtgatgg gcgcgctcac gttgaatcgc gagaacgcgc gcgtgctgta
      301 tccgattgtc gcgctgtggc tgctcgccta ttttcgcgag acgccgctca agacgcgagc
      361 ggcctgggtc ggtatcttca cggccgcggt cgcggccctg ctgctgccgg tcggcttgcg
      421 caactatcac gtcagcggca actttctgat ctcgacctcg cagctcgggc cgaacttcta
      481 catcggcaat catgccggcg cccacggcgg ctacgaggcg ctcgtcgccg accacggcaa
      541 cgccgccttc gagcgcgacg atgcgacgag gctggctgaa gacgcatcgg gccggcgact
      601 gtcgcccgcc gaagtctccg actactggct cggccgcgcg ctgcgcgaca tccgcagcga
      661 accgtcggcg tggctggcgc tcgccggccg caagctgctg ctgacgatca acgtcgtcga
      721 ggcggtggac accgagtcga tcgaggtcca ctcggactat tcacccgtcc ttcgcgggct
      781 cctctggttc aacttcggga tcatctttcc gctggccgcg ctcggcgcct ggcagacgcg
      841 cgaccagtgg cggcggctcg ccgtgctcta cgcgacattg gtggggctga cgctgtcggt
      901 cgcgatcttc tacgtgctcg cccgctatcg ccatccgatt gtgcccgtgg tgctgctgtt
      961 tgcgggcgcg gcggtgtccg cgatcccgag agccgccgct gcaatggccg acgactggca
     1021 gcggtggatc ccgggattgc tcctggccct cgtcaccgcg gccgtggtga acgtgccgat
     1081 gaagacgtcg tacgacgaaa cgcggctcaa tctcggttcg gaattgattc ggaccggccg
     1141 gcccgacgag gcgattcctc tgctcgagaa agcggccgac gcgtcgcccg actatgcgcc
     1201 gccgcacttc gatctcggcc tggcgctcga cgccacggga cagaccgagc gggcgatcgg
     1261 agaattttcc gccgccgtcc gccttcgacc ggatttcttc gaggctcagg aaaatctcgc
     1321 gatcgcgctc tggcacgcca gtcggcggca ggacgcgatc ctgcattatc aggaagccgt
     1381 gcgattgagg cctgacgacc cggtcgcgca gaacaacctc gccgccgcgt tactgcagga
     1441 gcagcggatc cccgaggccg tgccgcactt tgaagccgcg ctgaagctgc ggcccgacta
     1501 ttcggaggcg cacagcaacc tcgcactcg
//
LOCUS       DASVHM010000546         3276 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_255080, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000546 DASVHM010000000
VERSION     DASVHM010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3276
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255080"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1002)
                     /locus_tag="VF308_10220"
     CDS             complement(<1..1002)
                     /locus_tag="VF308_10220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEX7437075.1"
                     /translation="MAEFQTAPAGAGAGRKLLTWVDNRFPLSKLFNEHMAEYYAPKNF
                     NVWYVFGSLAMLVLVMQILTGIFLTMHYKPDATKAFASVEYIMRDVPWGWLIRYMHST
                     GASAFFIVVYLHMFRGLLYGSYRKPRELVWLFGCGIFLCMMAEGFFGYLLPWGQMSYW
                     GAQVIVNLFSAVPFIGPDLSLLIRGDYVVGDATLNRFFSFHVIAVPLVLLGLVAAHII
                     ALHEVGSNNPDGVEIKDTKDASGHPVDGIPFHPYYSVHDLYAVSVFLFIFSAVLFFAP
                     EGGGYFLEFNNFIEANPLKTPAHIAPVWYFTPYYSMLRATTDLMVNVLAIILAIGAAL
                     "
     gene            complement(1036..1635)
                     /gene="petA"
                     /locus_tag="VF308_10225"
     CDS             complement(1036..1635)
                     /gene="petA"
                     /locus_tag="VF308_10225"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011804238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEX7437076.1"
                     /translation="MTDQKIDGGKRTWIIASSCAGAIGAGFVAVPFISSFQPSERERA
                     AGAAVEVDISGIKPGEKLTVEWRGKPVWIVRRTPEQLAALPRLDALLADPTSKRKPDE
                     LTPAYARNEDRSIKPEYLVVVGICTHLGCSPIDKFVPGAQASLPDDWAGGFLCPCHGS
                     TFDMAGRVYKGKPAPDNLEVPPHMYLSDSRIVIGEDKRA"
     gene            1805..2227
                     /gene="mscL"
                     /locus_tag="VF308_10230"
     CDS             1805..2227
                     /gene="mscL"
                     /locus_tag="VF308_10230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011796739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HEX7437077.1"
                     /translation="MGFATEFKEFASKGNVVDLAVGVIIGAAFGKIVDSLVKDLIMPI
                     VGRIFGGLDFSNYFIALASPPPSYSGPMTYEALTKAGVPLFAYGNFITVLLNFLILAF
                     IIFMMVKQVNRLRQTKPVVAATPEDVVLLREIRDSLKR"
     gene            2377..>3276
                     /locus_tag="VF308_10235"
     CDS             2377..>3276
                     /locus_tag="VF308_10235"
                     /inference="COORDINATES: protein motif:HMM:NF019410.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1631 family protein"
                     /protein_id="HEX7437078.1"
                     /translation="MNPIEPRAQATLDAAINLIRTAAASAAIRVADNLTVAAQNATKI
                     SERDQLATTQQELRRNLGSFQNAFYESLREKVAKDIAPRVDQKRKLESADWQTLSLVD
                     EREVEEQMNFVRLGQMISHECEWQLRELSPYMGALLQLGSAADDRNPLRAEIVGAALH
                     KGIEAISGERESRRILARDVGQAVAHVMPECYGEILRLLQERGVQPVHLTVRTVEGPG
                     NQLGGANSGYTSLPREGHTSSRGGAYGEIESTSGPGSDMDLLAAHRRALATAFPGREA
                     MDSVHDALPSARGSNVARARVNAA"
BASE COUNT          567 a         1063 c         1133 g          513 t
ORIGIN      
        1 cagcgccgcg ccgatcgcaa ggatgatcgc gagcacgttg accatcaggt cggtggttgc
       61 gcgcagcatc gagtagtacg gcgtgaagta ccagaccggg gcgatgtgcg ccggcgtctt
      121 cagcgggttg gcctcgatga agttgttgaa ctcgaggaag tagccgccgc cttcgggggc
      181 gaagaagagc acggcgctga agatgaacag gaacacgctc acggcgtaca ggtcatgcac
      241 cgagtagtac ggatggaacg ggatgccgtc gaccgggtgg ccgctcgcgt ccttcgtgtc
      301 cttgatctcg acgccgtcgg gattgttcga gccgacttcg tgcagcgcga tgatgtgcgc
      361 ggcgaccagg ccgagcagca ccagcggcac ggcgatgacg tggaagctga agaagcggtt
      421 gagcgtcgcg tcgccgacga cgtagtcgcc gcggatcagg agcgacaggt ccgggccgat
      481 gaagggcacg gccgagaaca ggttgacgat cacctgcgcg ccccagtagc tcatctggcc
      541 ccatggcagc aggtagccga agaagccctc ggccatcatg cacaggaaaa tgccgcagcc
      601 gaacagccag accagctcgc gcggcttcct gtagctgccg tagagcaggc cgcggaacat
      661 gtgcaggtag acgacgatga agaacgccga ggctcccgtc gagtgcatgt agcggatcag
      721 ccagccccat ggcacgtcgc gcatgatgta ctcgaccgac gcgaacgcct tggtggcgtc
      781 gggcttgtag tgcatcgtca ggaagatgcc ggtgaggatc tgcatcacca gcacgagcat
      841 cgccagcgag ccgaagacgt accagacgtt gaagttcttc ggcgcgtagt actccgccat
      901 gtgctcgttg aagagcttgg agagcgggaa gcggttgtcg acccaggtca gcagtttgcg
      961 cccggcgccg gcgcccgcgg gcgcggtttg aaactcagcc attcctcgtg ctccaggaga
     1021 tcggttggcg ggccatcagg cgcgcttgtc ttcgccgatg acgatccggc tgtcggagag
     1081 gtacatgtgc ggcggcacct cgaggttgtc gggcgcgggc ttgcccttgt agacccggcc
     1141 ggccatgtcg aaggtcgagc cgtggcaggg gcagagaaag ccgccggccc agtcgtcggg
     1201 cagcgaggcc tgcgcgccgg gcacgaactt gtcgatcggc gagcagccga ggtgggtgca
     1261 gatgccgacg acgacgaggt actcgggctt gatcgagcgg tcttcgttgc gggcgtaggc
     1321 cggggtcagc tcgtcgggct tgcgcttgga ggtcgggtcg gcgagcaagg cgtcgagcct
     1381 gggcagcgcg gcgagctgct cgggcgtgcg gcggacgatc cagaccggtt tgccgcgcca
     1441 ctcgaccgtg agcttctcgc ccggcttgat gccgctgatg tcgacctcga cggccgcacc
     1501 cgcggcacgt tcgcgctcgg aaggttggaa actgctgatg aaggggacgg cgacgaatcc
     1561 cgcgccgatg gcgcccgcgc aactcgatgc aatgatccag gtgcgcttgc caccgtcgat
     1621 cttctggtcg gtcatgttct tgttcacccc tgtcaccccg tgatcgctcg aacgcgacgc
     1681 gggaagtcaa cctgcaattc tagcggacgc gtcaagcgcg agcggcggcg cgccggccgc
     1741 cttgacttgt cgtcgtcgcg gcgatactga ccgcgcgcca tttcggcgtg gggaggagat
     1801 gacgatgggg ttcgcaaccg agttcaagga gttcgcgtcg aagggcaacg tggtcgatct
     1861 cgcggtcggc gtcatcatcg gcgcggcgtt cgggaagatt gtcgactcgc tggtcaagga
     1921 cctgatcatg ccgatcgtcg gccggatctt cggcggcctg gacttctcga actacttcat
     1981 cgccctggcg tcgccgccgc ccagctactc cgggccgatg acctacgaag cgctcaccaa
     2041 ggcgggcgtc ccgctcttcg cctacggcaa cttcatcacc gtgctgctca acttcctgat
     2101 cctcgccttc atcatcttca tgatggtcaa gcaggtcaac cggctgcgcc agaccaagcc
     2161 ggtggtggcg gcgacgccgg aagacgtcgt cctgctgcgc gagatccgcg actcgctcaa
     2221 gcgctgagtt gccgagcggc acgggcgccg tgcccggcgc catcccccgc ccgagcgtga
     2281 cgcagtgccc gggcgaggct cgatttttgg ccccatacta ggagaatctt cgcccgctct
     2341 cgaggaattc tgccgccccc acggctcgac gcagagatga atccgatcga accgcgcgcc
     2401 caggccacgc tcgacgcggc catcaatctg atccggacgg cagcagcgtc ggcggcgatc
     2461 cgcgtggcgg acaacctcac cgtcgccgcg cagaacgcga ccaagatttc cgagcgcgac
     2521 cagctcgcca cgacgcagca ggagctgcgc aggaacctcg gctcgttcca gaacgcgttc
     2581 tacgaatcgc tgcgcgagaa ggtcgccaag gacatcgcgc cgcgcgtcga ccagaagagg
     2641 aagctcgagt cggcagactg gcagacgctc agcctcgtcg acgagagaga ggtcgaggag
     2701 cagatgaact tcgtccgcct cggccagatg atctcgcacg agtgcgaatg gcagctgcgc
     2761 gaactctccc cctacatggg cgcgctgctc cagctcggca gcgccgccga cgaccgcaac
     2821 ccgctgcgcg ccgagatcgt cggcgcggcg ctgcacaagg gcatcgaggc gatctcgggc
     2881 gagcgcgaga gccggcgcat cctggcgcgc gatgtcggcc aggcggtcgc ccatgtcatg
     2941 cccgagtgct acggggagat cctgcgcctg ctccaggagc gcggcgtcca gccggtgcac
     3001 cttacggtgc gaacggtcga gggcccgggc aaccagctcg gcggcgcgaa ttccggctac
     3061 acgagcctgc cgcgcgaggg ccacacctcg tcgcgcggcg gcgcctacgg cgagatcgag
     3121 tcgacctccg ggccgggcag cgacatggac ctgctcgccg cgcaccggcg cgcgctggcg
     3181 acggcgtttc ccggccgcga ggcgatggac agcgtccatg acgcgctgcc ctcggcgcgc
     3241 ggcagcaacg tcgcgcgcgc ccgcgtcaac gccgcc
//
LOCUS       DASVHM010000547         1774 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_38666, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000547 DASVHM010000000
VERSION     DASVHM010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38666"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1774)
                     /locus_tag="VF308_10240"
     CDS             complement(<1..>1774)
                     /locus_tag="VF308_10240"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437079.1"
                     /translation="NPPVSRYRANTTLFVVNNFWRLLRFLRPYRSGMIWSVVLAAGAM
                     GIGALIPLATGRAVDAVTRADKNTLFWAVLAVTGAGVLRAVLSVSRRVITGRVSLGVE
                     HDMRSRLYRHLQDLEIGFFHDQQTGQLMSRATVDLQVVRFFLGYGLTFMLQSALTIVI
                     SAVIMLMIQPNLALLILATMPFIVYTAAMYGKKARPAVQEVQQRLAELSANVEENVSG
                     IRVIKAFAREQLRLERFQRSTQRVFEQQLYSTRLSAFYGPLLGFIPSLGLAVVLIYGG
                     NQVIDGHLTLGQFTAFYFYMQMLIGPMRMLGSTLGSAQRATAAGMRIFELLDREPRIE
                     TSPDALPLPAGGGAVRFDSVSFFYPGAKRQTLSDVSFDVPSGKTVAIVGGTGSGKTTL
                     VSLVPRLYDVDGGSISVDGVDVRDLDPYELRRQVAFVAEDSFLFSATIADNIAYARDD
                     VTDEQIAEAARRAQIADFIMTLPDGYKTVIGERGVTLSGGQRQRVAIARALIADPRIL
                     ILDDATSSVDARTEAEIKQALREVMRERTTFVIAHRLSTISLADFIVVLQDGRVSDVG
                     THEQLLRRCDSYRALATKGMPESV"
BASE COUNT          336 a          577 c          573 g          288 t
ORIGIN      
        1 aacacgcttt ccggcatgcc cttcgtggca agcgcgcggt agctgtcgca acgacgcagc
       61 agctgctcgt gcgtgccgac gtcgctgacg cgcccgtcct gcagcacgac gatgaagtcg
      121 gcgagcgaga tcgtcgaaag ccggtgcgcg atcacgaaag tcgtacgctc gcgcatcacc
      181 tcgcgcagcg cctgtttgat ctcggcctcg gtgcgtgcgt cgacgctcga ggtcgcgtcg
      241 tcgaggatca agatccgcgg gtcggcgatc agcgcgcgag cgatcgcgac gcgctggcgt
      301 tggccgcccg aaagcgtgac gccgcgctcg ccgatcactg ttttgtagcc gtcgggaagc
      361 gtcattatga aatcggcgat ctgggcgcgc cgggcggcct cggcgatctg ctcgtcggtg
      421 acgtcgtcgc gtgcgtaagc gatgttgtcg gcgatcgtcg ccgaaaacag aaagctgtct
      481 tcggccacga aagcgacctg ccgccgaagt tcgtacgggt cgaggtcgcg tacgtcgacg
      541 ccgtccacgc tgatcgatcc accgtccacg tcgtagagcc gcggcaccag cgacaccagc
      601 gtcgtcttgc ccgagccggt gccgccgacg atcgccacgg tcttgccgga aggcacatcg
      661 aagctgacgt cgctgagcgt ctggcgcttg gcgcccgggt agaaaaaact caccgagtcg
      721 aagcgcacag cgccgccgcc ggccggcagc ggcaacgcgt cggggctggt ttcgatccgc
      781 ggttcgcggt cgagcagctc gaagatgcgc atgcccgcgg cggtcgcgcg ctgcgccgac
      841 ccgagcgtgc tgccgagcat gcgcatcggg ccgatcagca tctgcatgta gaagtagaac
      901 gctgtgaact gcccgagcgt caggtgaccg tcgatcacct ggttgccgcc gtagatcaac
      961 accaccgcca agccgagcga ggggataaag ccgagcagtg ggccgtagaa cgcgctcaac
     1021 cgggtgctgt agagctgttg ttcgaaaact cgctgcgtcg agcgttgaaa acgttccagc
     1081 cgcagctgtt cgcgcgcgaa cgccttgatc acgcgaatgc cgctgacgtt ctcttcgacg
     1141 ttcgccgaca gctcggcgag ccgctgctga acctcctgca ccgccgggcg ggccttcttt
     1201 ccgtacatcg ccgccgtgta gacgatgaac ggcatcgtcg ccaggatcaa cagtgccagg
     1261 ttgggctgaa tcatcaacat gatcaccgcc gaaatgacga tcgtcagcgc gctctgcagc
     1321 atgaacgtca ggccatagcc gaggaaaaac cgcacaactt gcagatcgac ggtcgcgcgc
     1381 gacatcagct ggccggtctg ctggtcgtga aaaaagccga tctcgaggtc ttgcaggtgc
     1441 cggtagaggc ggctgcgcat gtcgtgctca actcccagcg aaacgcggcc ggtgatcacc
     1501 cgccgcgaga ccgagagcac ggcgcgcagc acaccggcgc cggtaaccgc gagcaccgcc
     1561 cagaacagcg tgtttttgtc ggcccgcgtg accgcgtcga ccgcgcgacc ggtcgccagc
     1621 ggaatcagcg cgccgattcc catcgctccc gccgccagca ccaccgacca gatcatgccg
     1681 gaccgatacg gcctgagaaa gcggagaagg cgccaaaaat tgttcactac aaaaagtgta
     1741 gtattggcgc gatagcggct aaccggcgga tttg
//
LOCUS       DASVHM010000548         5318 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1340284, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000548 DASVHM010000000
VERSION     DASVHM010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5318
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1340284"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..685)
                     /locus_tag="VF308_10245"
     CDS             complement(<1..685)
                     /locus_tag="VF308_10245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013121851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX7437080.1"
                     /translation="MRAFYALRSALFVLFLVVTVVPWATAVVLLSIFVRGNTIYWLCV
                     GWLRLSIWGAKVICGVHARLHGFENLPDSPVVMLPKHQSTWETLAFPGLMPRPLCYVF
                     KRELLYIPFFGWAMARMDMIHIDRSKRAEAWNRVAEQGRRFMAKGHWIIMFPEGTRTP
                     RGSQGTYKSGGTRLAVATERPVLPVAVTSARCWPRKSFILRPGVIDVSVGRPIPSIGR
                     QPDELMREVE"
     gene            complement(685..1302)
                     /gene="gmhB"
                     /locus_tag="VF308_10250"
     CDS             complement(685..1302)
                     /gene="gmhB"
                     /locus_tag="VF308_10250"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HEX7437081.1"
                     /translation="MSPLKLIILDRDGTINEDRDDYVKSPDEWVPIPGSLEAIARLNH
                     AGWHTVVATNQSGLERGLFDTAMLNAVHFRMNQALARFGGRIDAVFFCPHGPGEGCHC
                     RKPMPGLLELIGERYGVALADVPLVGDSLGDLQAGAAVGCPTHLVRTGKCGHLSAEQL
                     GAVLLQVPGAQVHADLAAFAEHLIQGERKVRGASGKTDSGFGRLD"
     gene            complement(1304..3427)
                     /gene="glyS"
                     /locus_tag="VF308_10255"
     CDS             complement(1304..3427)
                     /gene="glyS"
                     /locus_tag="VF308_10255"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009345 - glycine-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEX7437082.1"
                     /translation="MTQSRNLLVELFVEELPPKALKKLGEAFADGVANGLIRFQLKQR
                     LADWKWYASPRRLAVFIPDVAHVAVDRIDQVKLMPVSVGLGPDGRATPALAKKLAALG
                     ADVSVVISRLKRQKDGKGEALFFDSLIKGASLAEGLQKSLDEALAKLPIPKVMEYQLE
                     DGWTSVKFVRPAHGLVALHGADVVPVSVLGLQAGRATQGHRFEAAKSTIDLRDADSYV
                     VQLREEGAVIASFADRRAEVVRQLDAAAARQGLKPIDDDALLDEVTALVERPNVLLCR
                     FESEYLEVPQECLILTMKANQKYFPLLDAAGRLTNRFLVVSNIRPDDPSRVIEGNERV
                     VRPRLADAKFFFDQDRRKTLASRVPGLDRMVYHGKLGTQGARVMRLRAIARWVAERIG
                     ADVEQADRAAELAKTDLLTDMVGEFPQLQGIMGGYYAAHDGEPADVVSAIATQYVNRR
                     GDEDEATNLVGVSLLIADRVETLVGIWGIGLKPTGEKDPFALRRHALTVIHSFASLGE
                     LGAGAARHLSLHNLLEFAQSSFGSIALQPDTVEQVEAFIYERYSNQLATLYDVPAVDA
                     VIGLRPPLQQVIGRLQAVRDFQRLDESAALAAANKRVGNILRKSEVAPTGAVDVALLK
                     EPAELALQRALAGVVPQAHARFEAGDYAGSLRALAALRGPVDAFFDSVMVNAEDPALR
                     VNRLALLGGLHAAMNRVADLSKLAT"
     gene            complement(3424..4341)
                     /gene="glyQ"
                     /locus_tag="VF308_10260"
     CDS             complement(3424..4341)
                     /gene="glyQ"
                     /locus_tag="VF308_10260"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009345 - glycine-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEX7437083.1"
                     /translation="MLTFQQIILRLQEYWSDQGCALLQPYDMEVGAGTSHTATFLRAL
                     GPEPWKAAYVQPSRRPKDGRYGQNPNRLQHYYQYQVMLKPAPPDILDLYLRSLEALGF
                     DLKVNDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCKPITGEITY
                     GLERLAMYLQGVDNVYDLVWTEGLKYRDVYHQNEVEQSTYNFEESDVEFLFGAFASHE
                     RQAAHLMDRQLALPAYEQVLKAAHSFNLLDARGAISVTERAAYIGRIRNLARSVAQSY
                     LESRARLGFPMAPRAWAEEVIALLEKKAA"
     gene            complement(4403..>5318)
                     /gene="lnt"
                     /locus_tag="VF308_10265"
     CDS             complement(4403..>5318)
                     /gene="lnt"
                     /locus_tag="VF308_10265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007867286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEX7437084.1"
                     /translation="AGEFAGAAKFTEASGHLEVTLLQGNVPQDEKFAAEHLPATLAWT
                     SEQLLGARGDLVVAPETVIPLLPDQLDPQYWMPLLRHFQVGSQAAILGLPLGNEESGY
                     TNSAAGISAATARLPGGFFRYDKHHLVPFGEFIPFGFHWFTRMMNIPLGDFNRGPLAA
                     PSFEVGDERIAPNICYEDLFGEELATRFGDAATAPTIFANISNIAWFGRTIAVDQHLQ
                     ISRMRTLEFERPMLRATNTGATAVIDHGGRVTAALAPYTRGAVEGVVEGRRGLTPFAR
                     WAGSFGLGPAWLLGAAIALATLRRGERP"
BASE COUNT          871 a         1794 c         1791 g          862 t
ORIGIN      
        1 cctcgacctc gcgcatcagt tcatcgggct ggcggccgat ggaaggaatc ggccggccca
       61 ccgacacgtc gatgacgccg gggcgcagga tgaagctctt gcgtggccag caacgcgccg
      121 acgtcaccgc cacgggcagc accggccgct cggtcgcgac ggcgagccgc gtgccgccgc
      181 tcttgtaggt gccctggctg ccgcgcggcg tgcgcgtgcc ttcgggaaac atgatgatcc
      241 agtgtccctt cgccatgaag cgccggccct gctcggccac ccggttccag gcttcggcgc
      301 gcttgctgcg gtcgatgtgg atcatgtcca tgcgcgccat cgcccagccg aagaacggga
      361 tgtagagcag ctcgcgcttg aacacgtagc acagcgggcg cggcatcagg cccgggaacg
      421 ccagggtctc ccaggtcgac tggtgcttgg gcagcatcac caccggcgaa tcgggcaggt
      481 tctcgaatcc gtgcagtcgg gcgtgcacgc cgcagatgac cttcgcgccc cagatcgaca
      541 agcgcagcca gccgacacac aaccagtaga tcgtgttgcc gcgcacgaag atcgagagga
      601 gcaccacggc ggtagcccac ggcaccacgg tgaccacgag gaagagcacg aacagcgccg
      661 agcgcagggc gtagaaggcg cgcatcaatc gagccttccg aagcccgaat cggtcttgcc
      721 cgaagcgccg cgaaccttgc gctcgccctg gatcaggtgt tcggcgaagg cggccaggtc
      781 ggcatggacc tgcgcgcccg gcacctgcag cagcaccgcc ccgagttgct ccgcggagag
      841 atgcccgcac ttgccggtgc gcaccaggtg ggtcgggcag ccgaccgcgg cgccggcctg
      901 caggtcgccc agcgagtcgc cgaccagcgg cacgtcggcc agcgcgacgc cgtagcgttc
      961 gccgatcagt tcgagaagac ccggcatggg cttgcggcaa tggcagccct cgcccggccc
     1021 gtgcgggcag aagaagaccg cgtcgatgcg cccgccgaag cgggccagag cctggttcat
     1081 cctgaaatgc acggcgttga gcatcgccgt atcgaaaagg ccgcgttcca ggcccgactg
     1141 gttcgtcgcg accaccgtgt gccagcccgc atggttgagc cgcgcgatcg cctcgagcga
     1201 gcccggaatc ggcacccact cgtccggcga cttgacgtag tcgtcgcggt cctcgttgat
     1261 cgtgccgtca cgatcgagga tgatgagctt gagcggactc atgtcaagtg gcgagcttgg
     1321 agaggtcggc gacgcggttc atcgcggcgt gcagcccgcc gagcagcgcc aggcggttga
     1381 cgcgcagcgc cggatcttcg gcgttgacca tcacgctgtc gaagaaggcg tcgaccggac
     1441 cacgcaacgc ggccagcgcc cggagcgacc cggcgtagtc gccggcctcg aagcgcgcat
     1501 gcgcctgcgg caccacgccg gccagggcac gttgcaacgc gagctcggcc ggctccttca
     1561 gaagcgcgac atcgaccgcc cccgtcggcg cgacctcgct cttcctcagg atgttgccga
     1621 cccgcttgtt ggcggcggcc agcgcggcgg attcgtcgag ccgctggaaa tcgcgcacgg
     1681 cctgcagacg cccgatcacc tgttgcagcg gcggccgcag cccgatgacg gcgtcgaccg
     1741 ccgggacgtc gtacagggtc gccaactgat tcgaatagcg ctcgtagatg aaagcctcga
     1801 cctgctcgac cgtgtccggc tgcagcgcga tcgaaccgaa gctcgactgc gcgaactcca
     1861 acaaattgtg cagcgagagg tgccgtgccg cgccggcgcc caattcgccg agcgacgcga
     1921 atgaatgaat cacggtcaac gcatgccggc gcagcgcgaa cgggtccttt tcgccggtcg
     1981 gcttcaaccc gatgccccag atgccgacca gcgtctcgac ccggtcggcg atcagcagcg
     2041 acacgccgac gaggttcgtc gcttcgtcct cgtcgccgcg ccggttgacg tattgcgtcg
     2101 cgatggcgga gaccacgtcg gccggttcgc cgtcgtgggc ggcgtagtag ccgcccatga
     2161 tcccctgcaa ttgcggaaac tcgccgacca tgtcggtcaa caggtcggtc ttggccaact
     2221 cggcggcccg gtcggcctgt tccacgtctg cgccgatccg ttcggcgacc cagcgcgcga
     2281 tcgcgcgcag gcgcatcacg cgcgcgcctt gcgtgccgag cttgccgtga tagaccatcc
     2341 ggtcgaggcc gggaacgcgc gaggcgagcg tcttcctgcg atcctggtcg aagaagaact
     2401 tggcgtcggc aaggcgcggc cgcaccacgc gctcgttgcc ttcgataacg cggctcgggt
     2461 cgtcggggcg gatgttgctg acgacgagaa accggttcgt gagcctgccc gccgcgtcga
     2521 gcagcggaaa gtacttctgg ttcgccttca tcgtcaggat cagacattcc tgcggcactt
     2581 ccaggtattc gctttcgaag cggcacagca gcacgttggg ccgctcgacc agcgccgtca
     2641 cttcgtcgag cagcgcgtcg tcgtcgatcg gcttcaagcc ttgcctcgcc gcggcagcat
     2701 cgagctggcg aaccacctcg gcgcggcgat cggcaaagct cgcgatcacc gcgccctctt
     2761 cgcggagctg aaccacgtag ctgtcagcgt cgcgcaggtc gatggtcgac ttggcggctt
     2821 cgaaacggtg accctgcgtg gcacgccccg cttgcaggcc cagcacgctg accggcacca
     2881 cgtccgcgcc atggagcgca acgaggccat gcgcgggccg cacgaatttc acgctggtcc
     2941 agccgtcttc gagctggtac tccatgacct tgggaatcgg cagcttggcg agcgcttcgt
     3001 cgagcgactt ctgcagccct tcggccaggc tcgcaccctt tatgagactg tcgaaaaaca
     3061 gcgcttcgcc tttgccgtcc ttctggcgct tcaagcggga tatgacaacc gagacgtcgg
     3121 cgccgagcgc ggccagtttc ttcgccaggg cgggcgtcgc gcggccgtct ggtccaaggc
     3181 ccacgctcac cggcatcagc ttgacttggt cgatgcggtc aacagcgacg tgggccacat
     3241 cgggaatgaa aaccgccaga cgcctcggac ttgcgtacca cttccagtcc gcaaggcgtt
     3301 gcttcaattg aaagcggatc agaccgttcg cgaccccatc ggcaaacgcc tcgcccagct
     3361 tcttcaacgc cttgggcggc agttcttcga cgaacagttc gacgagcagg tttctcgact
     3421 gcgtcatgcg gccttcttct cgagcagcgc gatcacttcc tcggcccagg cgcgcggcgc
     3481 catcggaaag ccgaggcgcg cccggctttc gagatagctc tgcgcgacgc tgcgcgccag
     3541 gttgcggatg cggccgatgt aggcagcccg ctcggtcacg ctgatggccc cgcgcgcatc
     3601 gagcaggttg aagctgtgcg cggccttgag cacctgctcg taggccggca gcgcgagctg
     3661 cctgtccatc aggtgtgcgg cctgccgctc gtggctggca aaggcgccga acaggaactc
     3721 gacgtcgctc tcctcgaagt tgtaggtgct ctgctcgact tcgttctggt gatagacatc
     3781 gcgatacttc aggccctcgg tccagaccag gtcgtagacg ttgtcgacgc cctgcaggta
     3841 catcgcgagg cgctcgaggc cgtaggtgat ttcgccggtg atcggcttgc agtcgatgcc
     3901 gccgacctgc tggaaatagg tgaactgcgt cacctccatg ccgttcagcc acacctccca
     3961 gcccaggccc caggcaccga gcgtcggatt ctcccaatcg tcttcgacga agcggatgtc
     4021 gttgaccttc agatcgaagc cgagcgcttc gagcgagcgc agatagaggt cgaggatgtc
     4081 gggtggcgcc ggcttcaaca tcacctgata ctggtagtag tgctggagcc ggttcgggtt
     4141 ctggccatag cggccgtcct tcggccgccg gctcggctgc acgtaggcgg ccttccaggg
     4201 ctcgggcccg agcgcgcgca ggaacgtcgc ggtgtggctc gtgccagcgc cgacctccat
     4261 gtcgtacggc tgcagcaggg cgcagccctg gtcgctccag tactcttgca ggcgcaggat
     4321 gatttgctgg aaagtcagca tgaaaatggg ttcgtcgcag ggtgcgccgc gacggggcgc
     4381 ttgggccggg ccgcgttcga ttctaggggc gctcgccgcg ccgcaacgtg gcgagcgcga
     4441 tggccgcgcc gagcagccac gcgggcccga ggccgaagct gccggcccag cgcgcaaagg
     4501 gcgtcaggcc gcgccgccct tcgaccacgc cttcgaccgc tccccgggtg tagggtgcca
     4561 gagccgccgt gacgcggccg ccgtggtcga tgaccgcggt cgcccccgtg ttggtggcgc
     4621 gcagcatcgg gcgctcgaac tcgagggtgc gcatgcgcga gatctgcaag tgctggtcga
     4681 ccgcgatggt acgaccgaac caggcgatgt tgctgatgtt ggcgaagatc gtcggcgcgg
     4741 tggcggcgtc gccgaagcgg gtggcgagtt cctcgccgaa gaggtcttcg tagcagatgt
     4801 tgggcgcgat ccgctcgtcg ccgacctcga acgacggcgc ggcgagcggc ccgcggttga
     4861 agtcgccgag cggaatgttc atcatccgcg tgaaccagtg aaagccgaac ggaatgaatt
     4921 cgccgaacgg cacgaggtga tgcttgtcgt agcggaagaa cccgcccggc aggcgcgccg
     4981 tggcggcgga gatgcccgcg gccgaattgg tgtacccgga ttcttcgttg ccgagcggca
     5041 gcccgagaat cgcggcctga ctgccgacct ggaaatggcg cagcagcggc atccagtact
     5101 ggggatcgag ctggtccggc agcagcggga tcaccgtttc gggcgccacg accagatcgc
     5161 cgcgtgcgcc gagcagctgc tcgctcgtcc aggccaacgt ggccggcaga tgctcggccg
     5221 cgaacttctc gtcctgcggc acgttgccct gcagcagcgt gacctcgaga tggccgctgg
     5281 cctcggtgaa cttcgcggcg cccgcgaatt cgccggcg
//
LOCUS       DASVHM010000549         2639 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_326263, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000549 DASVHM010000000
VERSION     DASVHM010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326263"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..904)
                     /locus_tag="VF308_10270"
     CDS             complement(<1..904)
                     /locus_tag="VF308_10270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020831969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX7437085.1"
                     /translation="MNEAVDLSKSPIGQSVRRREDRRFITGAGNYTDDVVLQGQTFGV
                     FLRSPHAHARIRSIDLTAAKKAPGVIDIITGADLAEAKVGGLPCGWLIHNKDGTPMKE
                     PAHPVLAQGKVRHVGDQVALIVAETLLQAKDAAELVIVDYEELPPVIDISAADSIGTS
                     VHDDVTDNVCYDWGHGDKAAVDAAFAKAAHVTKLSFVNNRLIPNAIEPRAANASYNRS
                     DESYTLYVANQNPHVERLLMCAFVLGLPESKVRVIAPDVGGGFGSKIFLYPEDVALVW
                     ASKRVGRPIKWTAERSESFLTDAHG"
     gene            complement(924..1403)
                     /locus_tag="VF308_10275"
     CDS             complement(924..1403)
                     /locus_tag="VF308_10275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX7437086.1"
                     /translation="MDIPISLTVNGKSVTKTVDSRTLLVQYLREQLQLTGTHVGCDTA
                     QCGACTVHMNGRAIKSCSILAAQVQGSQITTIEGLAKDGELHPMQAAFRECHGLQCGY
                     CTPGMVMSAVQLLADNPKANEEEIREALDGNICRCTGYHNIVKSIQFCQSGKTPTTV"
     gene            complement(1557..>2639)
                     /locus_tag="VF308_10280"
     CDS             complement(1557..>2639)
                     /locus_tag="VF308_10280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HEX7437087.1"
                     /translation="ALAGELDPALWTLGHIGWFQEYWIARNVQRARGERADPTHPRLA
                     SVVPEADAWYDPAMVDRARRRALVGGELPDLQATRAYLVDTLETTLELLAGIGVEDDA
                     SLYFHRLALFHEEMHAEAFAVLAQSLGIDTGLAARITTRPARPPLLFPGTRWLLGTSS
                     GGFRFDNEAEPHPVDVPEFEIDAQAVTWAQYGEFVEDGGYDERAHWSDAGWEWLQREG
                     RRTPRHVDQMRHGVLQRRFGVLARVAASHPAVHVSWYEADGWCRWAGRRLPGEVEWEA
                     AAHQGATRGFRWGDVHEWTASTFRPYPGFVAGPWRDYSEPAFGSHKVLRGASFATRPS
                     LHSARLRGFERPERDAGFFGFRSCAG"
BASE COUNT          365 a          903 c          942 g          429 t
ORIGIN      
        1 ggccgtgcgc gtcggtgagg aacgattcgc tgcgctcggc cgtccacttg atcggccggc
       61 cgacgcgctt gctcgcccaa accagggcga cgtcttccgg atagaggaag atcttcgagc
      121 cgaagccgcc accgacgtcg ggagcgatca cgcgcacctt cgattccggc aggccgagca
      181 cgaacgcgca catcaggagg cgctcgacgt gcgggttctg gttggcgaca tagagcgtgt
      241 agctctcgtc gctgcggttg tagctggcgt tggcggcgcg cggctcgatc gcgttcggga
      301 tcagccggtt gttgacgaac gagagcttgg tgacgtgcgc cgccttcgcg aacgcggcgt
      361 cgaccgcggc cttgtcgccg tggccccagt cgtagcagac gttgtcggtg acgtcgtcgt
      421 gcacgctcgt cccgatcgag tcggcggcgc tgatgtcgat caccggcggc agctcctcgt
      481 agtcgacgat gacgagctcg gccgcgtcct tcgcctgcag cagtgtctcg gcgacgatga
      541 gcgcgacctg gtcgccgacg tggcgcacct tgccttgcgc cagcaccggg tgcgccggct
      601 ccttcatcgg cgtgccgtcc ttgttgtgga tcagccagcc gcaagggagt cccccgacct
      661 tggcctcggc caggtcggcg ccggtgatga tgtcgatcac cccgggcgcc ttcttcgccg
      721 ccgtcaggtc gatcgagcgg atgcgcgcat gcgcgtgtgg gctgcgcagg aagacgccga
      781 aggtctgccc ttgcaggacg acgtcgtcgg tgtagttgcc ggcgccggtg atgaagcggc
      841 gatcttcgcg ccggcgcacg ctctggccga tcgggctctt gctcaggtcg acggcttcgt
      901 tcatgttgcc catgctctgc tcctcagacc gtcgtcgggg tcttgcccga ctggcagaac
      961 tggatcgact tgacgatgtt gtgataaccg gtgcagcggc agatgttgcc gtcgagcgcc
     1021 tcgcggatct cttcttcgtt cgccttcggg ttgtcggcga gcagctgcac cgccgacatc
     1081 accatccccg gcgtgcagta gccgcactga aggccgtggc actcgcggaa ggcggcctgc
     1141 atcgggtgca gctcgccgtc cttggcgagg ccctcgatcg tcgtgatctg gctgccctgc
     1201 acctgcgcgg cgaggatcga gcacgacttg atcgcgcgcc cgttcatgtg cacggtgcag
     1261 gcgccgcact gcgcggtgtc gcagccgacg tgcgtgcccg tgagctgcag ctgctcgcgc
     1321 aggtactgga cgagcagcgt gcgcgagtcg acggtcttcg tgaccgactt gccgttgacg
     1381 gtgagggaaa tgggaatgtc cacgccggtc tcctgcgggt tgtcttgaag cggctcgccg
     1441 cgacggtgcc gctgctgctg aggggtgctt gaacgattgt tggaggggcg ggaggcatcg
     1501 caaggatggg tttcccctaa tgcgccgcca cgccggcgca gccgcgtcgg ccgccgctag
     1561 ccggcgcagc tgcgaaagcc gaagaagccg gcgtcgcgct cgggccgctc gaagccgcgc
     1621 agacgtgcgc tgtgcaggct ggggcgggtc gcgaacgagg cgccgcgcag caccttgtgc
     1681 gagccgaacg cgggctccga atagtcgcgc caagggccgg cgacgaagcc cgggtacggc
     1741 cgaaacgtgc tcgccgtcca ctcgtggacg tcgccccagc gaaagccccg cgtcgccccc
     1801 tggtgcgccg cagcttccca ctcgacttcg cccggcaggc ggcgtccggc ccagcggcac
     1861 cacccgtcgg cctcgtacca gctcacgtga acggccggat gcgacgcggc gacgcgcgcg
     1921 agcacgccga agcgccgctg gaggacgccg tgacgcatct ggtcgacgtg gcgcggcgtg
     1981 cgccgacctt cgcgctggag ccactcccag cccgcgtcgc tccagtgcgc gcgctcgtcg
     2041 tagccgccgt cctcgacgaa ttcgccgtac tgcgcccagg tcaccgcctg cgcgtcgatc
     2101 tcgaactccg gcacgtcgac cggatgcggc tcggcttcgt tgtcgaagcg aaagccaccg
     2161 ctgctcgttc cgagcagcca gcgcgtcccc gggaagagaa gcggcggccg cgccgggcgc
     2221 gtcgtgatcc gcgcagccag gccggtatcg atgccgagcg actgtgcgag caccgcgaac
     2281 gcctcggcgt gcatctcctc gtggaagagc gcgaggcgat ggaagtagag cgacgcatcg
     2341 tcctcgacgc cgatcccggc gagcagctcg agcgtcgtct cgagcgtgtc gacgaggtac
     2401 gcgcgcgtcg cctgaaggtc gggcagctcg ccgccgacga gcgcgcgccg gcgcgcccgg
     2461 tcgaccatcg ccgggtcgta ccaggcatcg gcctcgggaa caaccgacgc caggcgcggg
     2521 tgcgtcgggt cggcgcgctc gccgcgcgcg cgctgcacgt tgcgggcgat ccagtactcc
     2581 tggaaccagc cgatgtggcc gagcgtccag agcgccgggt cgagctcgcc ggcgagcgc
//
LOCUS       DASVHM010000550         2386 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1266733, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000550 DASVHM010000000
VERSION     DASVHM010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1266733"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /gene="secY"
                     /locus_tag="VF308_10285"
     CDS             complement(<1..324)
                     /gene="secY"
                     /locus_tag="VF308_10285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018905177.1"
                     /note="forms heterotrimeric complex in the membrane; in
                     bacteria the complex consists of SecY which forms the
                     channel pore and SecE and SecG; the SecG subunit is not
                     essential; in bacteria translocation is driven via the
                     SecA ATPase; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEX7437088.1"
                     /translation="MATNANQLAKSGKFGDLRRRLLFLLGALVVYRLGAHIPVPGIDP
                     NELQKLFQGQQGGILSLFNMFSGGALSRFTVFALGIMPYISASIIMQLMTYVVPTLET
                     LKKEGE"
     gene            complement(365..796)
                     /gene="rplO"
                     /locus_tag="VF308_10290"
     CDS             complement(365..796)
                     /gene="rplO"
                     /locus_tag="VF308_10290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEX7437089.1"
                     /translation="MELNSIKPADGAKKARRRVGRGIGSGFGKTAGRGHKGQKSRSGG
                     YHKVGFEGGQMPLQRRLPKRGFKSHLLKFNAEVTLTALERLAVDEIDLLTLKQAGLVG
                     EIIKVVKVIKSGELTRKVALKGIGATAGAKAAIEAAGGSVD"
     gene            complement(832..1038)
                     /gene="rpmD"
                     /locus_tag="VF308_10295"
     CDS             complement(832..1038)
                     /gene="rpmD"
                     /locus_tag="VF308_10295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEX7437090.1"
                     /translation="MTEKSAAKAVEKGTVKVKLVRSVNGTRESHRATVRGLGLRKLNS
                     ESTLEDTAAVRGMINKVSYLVKVL"
     gene            complement(1061..1579)
                     /gene="rpsE"
                     /locus_tag="VF308_10300"
     CDS             complement(1061..1579)
                     /gene="rpsE"
                     /locus_tag="VF308_10300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011002906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEX7437091.1"
                     /translation="MAKFQPRAQTEGNEDGLKEKMIAVNRVTKVVKGGRTLSFAALTV
                     VGDGDGRVGMGKGKAKEVPVAVTKAMESARRNMVKVQLRNGTIQHKVVGEHGASRVLM
                     APAKQGDGIIAGGPMRAVFEVMGVTDIVCKSLGSSNPYNIVRATLDGLKHSTTPAEVA
                     AKRGLTVEQIFG"
     gene            complement(1610..1987)
                     /gene="rplR"
                     /locus_tag="VF308_10305"
     CDS             complement(1610..1987)
                     /gene="rplR"
                     /locus_tag="VF308_10305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEX7437092.1"
                     /translation="MLNKKDQRVRRSRQTRARIAVQRIARLTVYRTNLHIYASVISED
                     GAKVLASASTLEADVRKAVAGDSKVAGKGGNVAAASVVGKRIAEKAKAAGIEKVAFDR
                     AGFAYHGRVKALADAAREAGLQF"
     gene            complement(2000..>2386)
                     /gene="rplF"
                     /locus_tag="VF308_10310"
     CDS             complement(2000..>2386)
                     /gene="rplF"
                     /locus_tag="VF308_10310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEX7437093.1"
                     /translation="LMFAPANDSVEADSMSGTMRALVANMVSGVTKGFEKRLALVGVG
                     FRAAAQGTKLNLQIGFSHPVSKEMPVGVKVECPTQTEIVIKGFDRQAVGQVAAEVRAL
                     RPPEPYKGKGIRYLGEKVVIKETKKK"
BASE COUNT          350 a          814 c          745 g          477 t
ORIGIN      
        1 ctcgccttcc ttcttcagcg tctcgagcgt cggcacgacg taggtcatca gctgcatgat
       61 gatcgacgcc gagatgtacg gcatgatccc cagcgcgaac accgtgaagc gcgacaacgc
      121 cccgcccgag aacatgttga acaggctcag gatgccgccc tgctggccct ggaacagctt
      181 ctgcagctcg ttcgggtcga tgccgggcac cggaatgtgc gcgccgagcc ggtagacgac
      241 gagcgcgccc aacaggaaca gcagccggcg acgcaggtcg ccgaacttgc cgctctttgc
      301 cagttgattc gcgttggtgg ccactgatcg tcgttccgta ggagtgtgtg ggcgtgtgga
      361 aggctcagtc gaccgagccg ccggcggctt cgatcgccgc cttcgcgccg gccgtcgccc
      421 cgatgccttt gagcgccacc ttgcgggtca gttcgcccga cttgatgacc ttcacgacct
      481 tgatgatttc accgaccagg ccggcctgct tcaaagtcag cagatcgatt tcgtcgacag
      541 ccagacgctc gagcgcggtg agcgtcacct cggcgttgaa cttcagcagg tgcgacttga
      601 agccgcgctt gggcaggcgc cgttgtagcg gcatctggcc gccttcgaaa ccgaccttgt
      661 ggtagccgcc cgaacgcgat ttctggccct tgtggccgcg tccggcggtc ttgccgaagc
      721 ccgaaccgat gccccggccg acgcgacgcc gcgccttctt ggcgccgtcg gccggcttga
      781 tcgaattgag ttccatggtg tttcgtccct cccgtgtctc gcgctgcgct ctcagagcac
      841 cttcacgagg tacgagacct tgttgatcat cccgcgcacc gccgcggtgt cctcgagcgt
      901 cgattcgctg ttgagcttgc gcaggcccag gccgcgcacg gtcgcgcgat gcgactcgcg
      961 cgtaccgttg acgctgcgca ccagcttgac cttcacggtg cctttttcga cggccttggc
     1021 cgcgctcttt tcagtcatgg tgtttctccg cgcctccggc tcaaccgaag atctgttcga
     1081 ccgtcaggcc gcgcttggcg gcgacttcgg ccggcgtcgt cgaatgcttc aggccgtcga
     1141 gcgtggcgcg cacgatgttg taggggttcg aagaaccgag gctcttgcag acgatgtcgg
     1201 tcacacccat gacctcgaac accgcgcgca tcgggccgcc ggcgatgatg ccgtcgccct
     1261 gcttggccgg cgccatcagc acgcgcgagg caccgtgctc gccgaccacc ttgtgctgaa
     1321 tcgtgccgtt gcgcagctgg accttgacca tgttgcggcg cgccgactcc atcgccttgg
     1381 tgaccgcgac cggaacttcc ttggccttgc ccttgcccat gccgacccgg ccgtcgccgt
     1441 cgccgacgac cgtcagtgcg gcgaagctga gcgtgcggcc gcccttgacg accttggtca
     1501 cgcgattgac cgcgatcatc ttttccttca ggccgtcttc attgccttcg gtctgggcgc
     1561 ggggttgaaa ctttgccatt tttcgaattc ctcgatcgcg tcgtgacgct tagaactgca
     1621 gaccggcttc gcgcgcggca tcggccaacg ccttgacccg gccgtgatac gcgaagcccg
     1681 cgcggtcgaa cgccaccttc tcgatgccgg cggccttcgc cttctcggcg atgcgcttgc
     1741 cgacgacgct ggccgcggcg acgttgccgc ccttgccggc gaccttcgaa tcgccggcga
     1801 ccgccttgcg gacatcggct tcgagagtcg aggcgctggc cagaaccttc gcaccgtctt
     1861 cggagatcac gctcgcatag atgtgcaggt tggtgcggta gaccgtcagg cgggcgatac
     1921 gctgcaccgc gatccgggcg cgggtctggc gggagcgacg tacgcgctga tccttcttgt
     1981 tcaacatgtc atgcgctcct tacttcttct tcgtctcttt gatcacgacc ttttcgccga
     2041 gatagcgaat gcccttgccc ttgtacggct cgggcgggcg cagcgcgcgc acttcggcgg
     2101 cgacctggcc gacggcctgg cggtcgaaac ccttgatgac gatttcggtc tgcgtcgggc
     2161 actcgacctt gacgccgacc ggcatctcct tcgacaccgg atgcgagaaa ccgatctgca
     2221 ggttgagctt cgtgccctgg gccgcggcgc ggaaacccac gccgaccagc gcgaggcgct
     2281 tctcgaaacc cttggtgacg ccgctgacca tgttggcgac gagcgcgcgc atggtgcccg
     2341 acatggagtc ggcctcgacc gaatcgttgg ccggcgcgaa catcag
//
LOCUS       DASVHM010000551         2910 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1340417, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000551 DASVHM010000000
VERSION     DASVHM010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1340417"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..1073
                     /locus_tag="VF308_10315"
     CDS             6..1073
                     /locus_tag="VF308_10315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018905352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HEX7437094.1"
                     /translation="MHTIRTPGIRPASKAPHRPWASTLCAALALFAALPAQAQDKPVA
                     LKLSSWVPAQHPLNPALIAWAEDVKKASNGTITATLFPSEQLGKAFDHYDMAKDGIAD
                     FAYVNPGYQPGRFPVMAGAGLPFIFANGKGGSAAIDAWYRQYAAREMKDVKFCFAFVH
                     DPGTFHGKKKLLSPTDVKGMKVRPATSTIGQMITLLGGTNVQASAPEARDMLERGVAD
                     AITFPWGSISLFGIDKVVTFHMDVPLYTTPFVWVMNKDKYEAMSAAQKKVIDDHCTTE
                     WAEKVASPWADFEFGGRAKLAGQAGHESYKLTAEQLDAWRKAVAPTEAEWAAGATKAG
                     YDAKGAMESLKATVAKYKAGF"
     gene            1087..1629
                     /locus_tag="VF308_10320"
     CDS             1087..1629
                     /locus_tag="VF308_10320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015866690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HEX7437095.1"
                     /translation="MSLAATAPGRPRRNAMDRIIDAIEWCAATFVGIVAANIFLAVVL
                     RKFFSWQIPDSYDLGKMLLGTLIFWGIAATSYRGGHITVDLLWTAANAKWKRLIDVFA
                     TLVLLFVVTVQTIMLFDKVRATWVDHVLTYDLNLPTWPFYAVAWLGDVSAVVLIAIRT
                     WRLVFHPGDLVEAGEVKVVE"
     gene            1709..>2910
                     /locus_tag="VF308_10325"
     CDS             1709..>2910
                     /locus_tag="VF308_10325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019655093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter permease"
                     /protein_id="HEX7437096.1"
                     /translation="MSNDLIAFIAFVSLFVLMLLRVPVGMAMGLVGVTGYSVIVGPGP
                     ALKLVGQTSLRTVTDYTFGVIPMFMLMGALVSVSGLSKEMFKAADAFLGHLRGGLGIA
                     TVVACGGFAAICGSSVATAATFSTVAYPEMRRFGYPQSFSTGVIAAGGTLGAMLPPST
                     VLAVYAILTQQDIGKLFMAGVLPGLLAMAMYVLTIAVIVKVRPRFLPGGQVKPWRERI
                     DALRLVWAPLALFVFVIGGLYGGFFTPTEAGGVGASGAFILGALRGKLDRTNTREALL
                     QATRTAAAVFTVLIGALLFGYFLTITQTPQKLTEFLTSLGVGRYGVLALIMLMYLVLG
                     CLMDAMAMIILTVPIIFPVVTALGFDPIWFGVIIVMTVELGLIHPPVGMNVFVIKSVV
                     KDVSFTTI"
BASE COUNT          454 a         1023 c          928 g          505 t
ORIGIN      
        1 acaccatgca cacgattcga acccccggca tccgccccgc atcgaaggcc ccccaccggc
       61 catgggcgag cacactctgc gccgccctcg cgctgttcgc cgcgctgccg gcgcaggcgc
      121 aggacaagcc ggtcgcgctc aagctgtcga gctgggtgcc ggcccagcac ccgctgaacc
      181 cggccctgat cgcctgggct gaagacgtca agaaggcgtc gaacggcacg atcaccgcga
      241 cgctcttccc gtccgagcag ctcggcaagg ccttcgacca ctacgacatg gccaaagacg
      301 gaatcgccga cttcgcctac gtgaaccccg gctaccagcc gggtcgattc ccggtgatgg
      361 cgggcgcggg actaccgttc atcttcgcca acggcaaggg cggctcggcc gcgatcgatg
      421 cgtggtaccg gcagtacgcc gcccgggaaa tgaaggacgt gaagttctgc ttcgccttcg
      481 tccacgatcc cggcaccttc cacggcaaga agaagctact gtccccgacc gacgtgaaag
      541 gcatgaaggt gcggccggcg accagcacga tcggccagat gatcacgctg ctcggcggca
      601 ccaacgtgca ggcctccgcg cccgaggcgc gcgacatgct cgagcgcggc gtggccgatg
      661 cgatcacgtt tccgtggggc tcgatcagcc tcttcggcat cgacaaggtc gtgaccttcc
      721 acatggacgt gccgctctac acaacgccct tcgtctgggt catgaacaag gacaagtacg
      781 aggcgatgtc ggcggcccag aagaaggtga tcgacgatca ctgcacgacc gagtgggccg
      841 agaaggtcgc gtcgccgtgg gccgacttcg agttcggcgg ccgcgccaag ctcgccggtc
      901 aggccggtca cgagtcgtac aagctgacgg ccgagcagct cgacgcctgg cgcaaggccg
      961 tggccccgac cgaggccgag tgggccgccg gtgcaaccaa ggccggctac gacgcgaagg
     1021 gcgcgatgga gtcgctgaag gcaacggtcg cgaagtacaa ggccggcttc tgaccgcgag
     1081 cgcgcgatga gcctcgccgc gacggccccc gggcggccgc gccgcaatgc catggatcgc
     1141 atcatcgatg cgatcgagtg gtgcgctgcg accttcgtcg gcatcgtcgc ggccaacatc
     1201 ttcctcgccg tcgtgctgcg caagttcttc agctggcaga tccccgacag ctacgacctc
     1261 ggcaagatgc tgctcggcac gctgatcttc tggggcatcg cggcgacgag ctatcgcggc
     1321 ggccacatca ccgtcgacct gctgtggacc gcggccaacg cgaaatggaa acgcctgatc
     1381 gacgtcttcg cgaccctcgt gctgctcttc gtcgtgacgg tgcagaccat catgctgttc
     1441 gacaaggtgc gcgcgacctg ggtcgaccac gtgctgacct acgacctcaa cctgccgacc
     1501 tggcctttct atgcggtcgc gtggctcggc gacgtctcgg ccgtcgttct gatcgcgatc
     1561 cgcacctggc ggctggtatt ccacccgggc gacctggtcg aagccggtga agtgaaggtc
     1621 gtcgaatgag cgcagcgccg ggccgcccca agcaagtgaa tgtccccacg ggggaccggt
     1681 cgcggtactc cgcggccgag gggcacccat gagcaacgac ctgatcgcgt tcatcgcgtt
     1741 cgtctcgctc ttcgtcctga tgctgctgcg cgtgccggtc ggcatggcga tggggctggt
     1801 cggcgtgacc ggttacagcg tcatcgtcgg gcccgggccg gccttgaagc tggtcggcca
     1861 gacctcgctg cgcaccgtca ccgattacac cttcggcgtg atcccgatgt tcatgctgat
     1921 gggcgctctc gtctcggtct cgggcctctc caaggagatg ttcaaggcgg ccgacgcctt
     1981 cctcggccac ctgcgcggcg ggctcggcat cgcgaccgtc gtcgcctgtg gcggcttcgc
     2041 cgcgatctgc ggatcttcgg tggccacggc cgcgaccttc tcgaccgtcg cctaccccga
     2101 gatgcggcgc ttcggctacc cgcagtcgtt ctcgaccggc gtgatcgccg ccggcggcac
     2161 cctcggcgcg atgctgccgc cttcgaccgt gctcgcggtc tacgcgatcc tgacccagca
     2221 ggacatcggc aagctcttca tggccggcgt gctgcccggc ctgctcgcga tggcgatgta
     2281 cgtgctgacg atcgcggtca tcgtcaaggt gcgcccgcgc tttctgcccg gcggccaggt
     2341 gaaaccctgg cgcgagcgca tcgacgcgct gcgcctcgtc tgggccccgc tcgccctctt
     2401 cgttttcgtc atcggcggcc tctacggcgg cttcttcacc ccgaccgagg cgggcggggt
     2461 cggcgcgagc ggcgccttca tcctcggcgc gctgcgcggc aagctcgacc gcacgaacac
     2521 gcgcgaagcg ctgctgcagg ccacgcgcac cgcggcagcc gtcttcaccg ttctgatcgg
     2581 cgcgctcctc ttcggctatt tcctgaccat cacgcagacg ccccaaaagc tgaccgaatt
     2641 cctgaccagt ctgggcgtcg gccgctacgg cgtgctcgcg ctcatcatgc tgatgtacct
     2701 cgtgctcggc tgcctgatgg acgcgatggc gatgatcatc ctcaccgtgc cgatcatctt
     2761 tccggtcgtc actgcgctcg gcttcgatcc gatctggttc ggcgtcatca tcgtcatgac
     2821 ggtcgaactc gggctgatcc atccgccggt gggcatgaac gtcttcgtga tcaagagcgt
     2881 cgtcaaggac gtcagcttca cgaccatctt
//
LOCUS       DASVHM010000552         4114 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_112384, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000552 DASVHM010000000
VERSION     DASVHM010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4114
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112384"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1409
                     /locus_tag="VF308_10330"
     CDS             <1..1409
                     /locus_tag="VF308_10330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008903003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HEX7437097.1"
                     /translation="EITPDEVRSVRTDAIIATGRSDYPNQINNVLCFPYIFRGALDSG
                     ATTITVEMEIAAVHAIAGLAQAEQSEVVTAAYAGASQSFGREYLIPKPFDPRLMMRIA
                     PAVAQAAADSGVAARPIADMDAYRAKLQTFVYASGTTMRPIFTLAKGAKKKRVAFAEG
                     EEERVLRAVQVVVDENLARPTLIGRPEVIAQRIAKFGLRLTAGRDYDLVNTENDHRYR
                     DYWQTYHELTARKGVTAQLAKIEMRRRLTLIGAMLLKTGEVDGMLCGTWGGTAMHLQY
                     IDQVIGLREGAKTYACMNGLILPGRQVMLVDTHVNYDPTAEQLAEITVMAAEEMLRFG
                     LKPKAALLSHSNYGTSNQPSAQKMRDALALLRTNAAWLEVDGEMHGDAALDAPYRYDL
                     MPDSPLIGEANLLVLPNIDAANICYNLLKTAAGGGIAIGPVLLGAAQPVHILTPSATV
                     RRIVNMTALAVADANAAR"
     gene            1753..2088
                     /locus_tag="VF308_10335"
     CDS             1753..2088
                     /locus_tag="VF308_10335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease domain-containing protein"
                     /protein_id="HEX7437098.1"
                     /translation="MLLGPEVQARQQLHHEDAIALAQLPAEAQSVHRLIRAGGPFTHS
                     KDGAVFGNRERALPTRPRGFYREYTVATPGARDRGARRIVCGGREPKAPDACFYTADH
                     YISFHRITP"
     gene            2135..2530
                     /locus_tag="VF308_10340"
     CDS             2135..2530
                     /locus_tag="VF308_10340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="barstar family protein"
                     /protein_id="HEX7437099.1"
                     /translation="MLLQTVRPNIVQSIRAYRVEDLMQAAEHAGQHFLYANLTAAQSK
                     QDVLEGIADAFTFPAHFGKNLDALYDCMTDLVHKAGAQPGFVVVLEQLPDNPRFDREA
                     REQLLDVFRDAADFWAERKIPFRCFYSFQ"
     gene            complement(2702..3493)
                     /gene="rsmA"
                     /locus_tag="VF308_10345"
     CDS             complement(2702..3493)
                     /gene="rsmA"
                     /locus_tag="VF308_10345"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEX7437100.1"
                     /translation="MKHVARKRFGQHFLTDAGVIDAIVACIDPKPSDAVVEIGPGLGA
                     MTGPLAERCGRLTVIELDRDLAARLRRRPELDVIEADVLGVDFRALAERLGARLRVVG
                     NLPYNISTPILFHLLGAVDCIEDQHFMLQKEVVQRMGAAPGTKAYGRLSVMLQWRYDI
                     EAVLDVPPQAFDPPPRVESAVVRMQPLAQVAPIDAARLGELVTVAFSQRRKLLRNTLG
                     RWLEEHGYTGTFDLQRRAEEVPVAEFVALLGSLEPVRHEQAPHPR"
     gene            complement(3507..>4114)
                     /locus_tag="VF308_10350"
     CDS             complement(3507..>4114)
                     /locus_tag="VF308_10350"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX7437101.1"
                     /translation="GVIGLRPQDRLPDVFVAAVRQLQPGEVTPQLLRTGAGFHLLKLV
                     ERRDGASVAVQQTRARHILLRVSAQLMQDAATRRLAELKSAIVSGTKSFEQAARENSE
                     DASAALGGDLGWVSPGTFVPEFEEAINRLPPDGISDPVVSRFGVHLIQVTDRREVALD
                     VKQQREQARNMLREQKFEDAYAEWIRDLRGRAYIELREPPV"
BASE COUNT          725 a         1386 c         1350 g          653 t
ORIGIN      
        1 ccgagatcac gcccgacgaa gtgcgcagtg tgcgcaccga cgcgatcatc gcgacggggc
       61 gcagcgacta cccgaaccag atcaacaacg tcctctgctt cccgtacatc tttcgcggag
      121 cgctcgattc gggcgcgacc acgatcacgg tcgagatgga gatcgcggcg gtgcacgcga
      181 tcgccgggct ggcccaggcc gagcagagcg aggtcgtgac ggctgcgtac gctggcgcaa
      241 gccagagctt cggccgcgag tacctgatcc ccaagccctt cgatccgcgc ctgatgatgc
      301 ggatcgcccc ggcggtcgcc caggcggccg ccgactccgg cgtcgcggcg cggccgatcg
      361 ccgacatgga cgcctaccgg gcgaagctgc agaccttcgt ctatgcctcg ggcacgacga
      421 tgcggccgat cttcacgctc gccaagggcg cgaagaagaa gcgtgtcgcc ttcgccgagg
      481 gcgaagagga gcgcgtgctg cgcgcggtgc aggtcgtggt cgacgagaac ctggcgcggc
      541 cgacgctgat cggccggccc gaggtgatcg cccagcgcat cgccaagttc ggcctgcgtc
      601 tgaccgcggg tcgcgactac gacctcgtca acaccgagaa cgaccaccgc taccgcgact
      661 actggcagac ctaccacgag ctgacagcgc gaaagggcgt caccgcgcag ctcgccaaga
      721 tcgagatgcg gcggcgcctg acgctgatcg gcgcgatgct gctcaagacc ggcgaggtcg
      781 acggcatgct ctgcggcacc tggggcggca ctgccatgca cctgcagtac atcgaccagg
      841 tgatcggcct gcgcgagggt gccaagacct atgcctgcat gaacgggctg atcctgccgg
      901 gccggcaggt gatgctggtc gacacccacg tcaactacga cccgacggcc gagcagctcg
      961 ccgagatcac ggtgatggcg gccgaagaaa tgctgcgctt cgggctcaag ccgaaagcgg
     1021 ccctgctgtc gcacagcaac tacggcacca gcaaccagcc ctcggcgcag aagatgcgcg
     1081 atgcgctcgc cctgctccgc acgaacgccg cctggctcga ggtcgatggc gagatgcacg
     1141 gcgacgcggc gctcgatgca ccctaccgtt acgacctgat gcccgacagc cccttgatcg
     1201 gcgaggccaa cctgctggtc ctgcccaaca tcgatgccgc gaacatctgc tacaacctgc
     1261 tcaagaccgc tgccggcggc ggcatcgcga tcgggccggt gctgctgggc gcggcgcagc
     1321 cggtgcacat cctgacgcct tcggcgacgg tgcgccgcat cgtcaacatg accgccctcg
     1381 ccgtggcgga cgcgaacgcc gcgcgctgag cggcaaaagc gtccgcgcac caagccgccg
     1441 cgtcgtgttg cggtgcagtg gccccctccc tgcgagggct ttccgcggcc gtgcccgcga
     1501 acgacgcggc caccctgagg gcgtcatgac agctcaggtt cgcattcatt ggtctgtcaa
     1561 atcacgcatg taagcgccca caagcatcag gggcaatatg cactgaattg aggcaaaggg
     1621 ttgagctttt cgacccgttt cggtaacatc gtgaactttt ggattgaggg ataacccgtg
     1681 tttttctccg gtcggctgcc gcagtggtac ccgctgcgca ggtgggggct cggagtcagc
     1741 atcgcagtcg ccttgttgct cgggcccgag gtccaggccc ggcagcaact gcaccacgaa
     1801 gacgcgatcg cgctcgcgca gttgcctgcc gaggcgcaat cggtgcatcg actgattcgt
     1861 gcggggggcc ctttcacgca ctcgaaggac ggagcggtgt tcggcaaccg ggaacgtgcg
     1921 ttgccaaccc ggccgcgcgg tttttaccgc gaatacacgg ttgccacgcc gggcgctcgc
     1981 gatcgaggcg cgcgccggat cgtttgcggc gggcgcgaac ccaaggcgcc cgacgcttgt
     2041 ttctacaccg ccgatcacta catcagcttt cacaggatta cgccgtgacc gcaggcaccc
     2101 agattttttt catgactcga ggaggaacgt gaccatgctg ttgcagacag tccgtccgaa
     2161 cattgttcaa tcgatccgcg cctaccgcgt ggaagacctg atgcaggcgg cggagcatgc
     2221 cggccagcat tttctctatg cgaatctgac cgcagcccaa tccaaacagg acgtgctgga
     2281 aggcatcgcc gatgccttca cgttccccgc ccatttcggc aagaacctcg atgccctcta
     2341 cgactgcatg accgatctcg tgcacaaggc cggcgcgcag cccggcttcg tggtggtgct
     2401 cgagcagctg cccgacaacc cgcgcttcga ccgcgaggcg cgcgagcagt tgctcgatgt
     2461 gtttcgcgac gcggccgatt tctgggccga gcgaaaaata cctttcaggt gcttctattc
     2521 ttttcagtag cccgctcaca ggaacaagta tcctgggagc gggctaccga gatggaccaa
     2581 ggtatggcgg acaagccggt caaaccggcc tccaagaatg ccgcgaacgg cagcttcggc
     2641 atgaacatgc ccttgatgag cagcgccttc gacacggcga tgtggttgaa cgcggcctga
     2701 ttcagcgcgg atgcggggcc tgttcgtggc gaaccggttc cagggaaccg agcaaggcca
     2761 cgaactcggc caccggcacc tcctcggcac ggcgctgcag gtcgaaggtc ccggtatagc
     2821 cgtgttcctc gagccagcgc ccgagggtgt tgcgcaacag ttttcgacgc tgtgagaacg
     2881 ccaccgtgac gagttcgccg agccgggccg catcgatcgg cgcgacctgt gcaagcggtt
     2941 gcatgcgcac gacggccgac tcgacgcgcg gcggtggatc gaacgcttgc ggcggcacgt
     3001 cgagcaccgc ctcgatgtcg tatcgccact gcagcatcac gctcagacgc ccgtaggcct
     3061 tcgtgccggg cgcggcgccc atgcgctgca cgacctcctt ctgcagcatg aagtgctggt
     3121 cttcgatgca atcgacggca ccgagcaggt ggaacaggat cggggtcgag atgttgtagg
     3181 gcagattgcc gaccacgcgc agccgcgctc cgaggcgctc ggcaagggca cgaaagtcga
     3241 cgccgagcac gtcggcctcg atcacatcga gctcaggcct gcgccgcagc cgcgccgcca
     3301 ggtcgcggtc gagctcgatg accgtcaggc gcccgcagcg ctcggcgagc ggccccgtca
     3361 tcgccccgag accggggccg atctcgacca ccgcgtcgga cggcttcgga tcgatgcacg
     3421 cgacgatggc gtcgatcacc cccgcatcgg tcaggaagtg ctggccgaag cgcttgcggg
     3481 cgacgtgttt caacaccgcg cgccgatcag accggcggct ctcgcaattc gatgtaggcg
     3541 cggccgcgca ggtcgcgaat ccactcggcg taggcgtcct cgaacttctg ctcgcgcagc
     3601 atgttgcggg cctgctcgcg ctgctgcttc acgtcgagcg cgacttcgcg ccgatcggtc
     3661 acctggatca ggtgcacacc gaagcgcgag acgaccggat cggaaatgcc atccggcggc
     3721 agccggttga tggcttcttc gaactcggga acgaaggttc cgggcgagac ccagccgaga
     3781 tcgccgccaa gtgccgcgct cgcgtcctcg gagttctcgc gcgcggcctg ctcgaacgac
     3841 ttcgtgccgg aaacgatcgc gctcttcaac tcggccaggc gccgcgtcgc ggcatcctgc
     3901 atcaattgcg ccgagacccg cagcaggatg tgacgggcac gggtctgctg gacggcgacg
     3961 ctggcgccgt cgcgccgttc gacgagcttc aggagatgaa agccggcccc ggtgcgcagc
     4021 agttgcggcg tgacctcgcc gggctggagc tggcgcaccg ccgcgacgaa gacatcgggc
     4081 aggcggtctt gggggcgcaa gccgatcacg ccgc
//
LOCUS       DASVHM010000553         1779 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1409569, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000553 DASVHM010000000
VERSION     DASVHM010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1409569"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            25..807
                     /locus_tag="VF308_10355"
     CDS             25..807
                     /locus_tag="VF308_10355"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HEX7437102.1"
                     /translation="MLKQGRLGALARRWRREAALGDFMGWRAAAKAAVWPLVPALAQH
                     AIKRALRRGRPPAWLDPDFAAHIDLAGRLARHDDGLRFPSLEQTETWHEGTSGSAVHS
                     AEMFDRSGARFGIEHWHPFQDRRIVEFGLALPAEQRWRDGREKDLLRRAMAPHVPPAI
                     ASRLVNPGASSAFVEAIAAEGGPAPFDDMAAERLGWVRGPEVRELYQRMTHWYHSGDA
                     RYAPLAWTLWLILSIEMWLQVVTRAPITAPERFAAESETVVQ"
     gene            834..1001
                     /locus_tag="VF308_10360"
     CDS             834..1001
                     /locus_tag="VF308_10360"
                     /inference="COORDINATES: protein motif:HMM:NF033521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lasso RiPP family leader peptide-containing
                     protein"
                     /protein_id="HEX7437103.1"
                     /translation="MSESEGPGNTPPDEAKKPYATPTLIEYGSVSKLTMAKGSTNSEF
                     GVPNKLRRPCL"
     gene            1035..>1779
                     /locus_tag="VF308_10365"
     CDS             1035..>1779
                     /locus_tag="VF308_10365"
                     /inference="COORDINATES: protein motif:HMM:NF018076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEX7437104.1"
                     /translation="MSLVVDEHRQYLADTARVDAFDRALKAVVRPGDVVLDLASGTGI
                     LGLLACRAGAGRVYALEMEPIVELARQIASDNGFADRIVCIQAVSTGATLPEPVDLIV
                     TDGAGRFGFEAGLLETLPDARRRFLKPGGRTIPSALTLWLAPVEADEPRAHVDFWAQP
                     VHGLSFAAAHAIARSTGYPRHFTTRELLAEPAALTTLDPSRETPVLSGRVELTVRRDA
                     TLHGIGGWFSAQLAPDVELTNAPDAPGRIN"
BASE COUNT          271 a          608 c          625 g          275 t
ORIGIN      
        1 tcgagtcccg ccgcgtatgc cgacttgctc aagcaggggc gtcttggcgc gctcgcccgg
       61 cgatggcggc gcgaggccgc gctcggagat ttcatgggat ggcgcgccgc cgcgaaggct
      121 gccgtctggc cgctcgtgcc ggcgctcgca cagcacgcca tcaagcgggc gctccgccgc
      181 ggccgcccgc cggcatggct cgacccggac ttcgccgcgc acatcgatct cgccggacgg
      241 ctcgcgcgac acgacgatgg cctccggttc ccgtcgctcg agcagaccga gacatggcac
      301 gaaggcacga gcggctccgc ggtgcactcg gccgaaatgt tcgaccgatc cggggcgcgc
      361 ttcggcatcg agcactggca tccctttcag gaccgccgca ttgtcgaatt cggcctcgcc
      421 ctgccggccg agcagcggtg gcgcgacggg cgcgagaagg atctgctccg ccgcgccatg
      481 gcaccgcacg tgccgccggc gatcgccagc cggctggtca acccgggcgc gtcgagcgcg
      541 ttcgtcgagg cgatcgccgc cgaaggcggt ccggcgccat tcgacgacat ggccgccgag
      601 cggctcgggt gggtccgtgg gccggaggtc cgtgagctat atcagcgcat gacgcattgg
      661 tatcactcag gcgacgcgcg ctacgcgccg ctggcgtgga cgctttggct catcttgtcg
      721 atagaaatgt ggctccaggt cgtcacccgc gccccgatca cggcaccgga gcgcttcgcg
      781 gccgagagcg agactgtggt tcaatagctt acgtaaactt gaggagaacg ctggtgtctg
      841 aatcagaagg gcccggcaac acgccgccgg acgaggccaa gaagccgtac gccacgccca
      901 cgttgatcga gtacgggagc gtgtccaagt tgacgatggc caaaggcagc acgaacagcg
      961 agttcggcgt tccgaacaag ctaaggcgcc cttgtctgtg atcgtgggga gctgccgatc
     1021 aagcgaggcg cgctgtgtcg ctcgttgtcg atgagcaccg gcaatacctg gcggatacgg
     1081 cgcgcgtcga tgcgttcgac cgcgcgctga aagcggttgt caggcccggc gacgtcgtcc
     1141 tcgatctcgc atcgggcacg gggattctcg gcctgctggc ctgccgggcc ggggctggcc
     1201 gcgtctacgc gctcgagatg gagccgatcg tcgagctcgc gcggcagatc gccagcgaca
     1261 acggcttcgc cgatcgcatc gtctgcattc aagcggtgtc cactggcgcc accctccctg
     1321 aaccggtcga tctcatcgtc accgacggcg ccgggcgctt cggcttcgag gccggcctgc
     1381 tcgagacgct gcccgacgcg cggcggagat ttctgaagcc gggcggtcgc accattccat
     1441 cggcgctgac gctgtggctc gcgccggtcg aggcggacga accgcgcgcg catgtggatt
     1501 tctgggcgca gccggtgcac gggctgtcct ttgcggccgc gcacgcgatc gcacgatcga
     1561 ccggttatcc gcgacacttc acgacgcgcg agctgctggc agagccggca gcgctgacga
     1621 cgctcgatcc gagcagggag acgcccgtgc tgtcgggacg cgtcgagctc acggtccgcc
     1681 gcgacgcgac gctgcacggc atcggcggct ggttttcggc gcagctggcg ccggacgtgg
     1741 agttgacgaa cgcgccggac gcgcccggac gcatcaacc
//
LOCUS       DASVHM010000554         6048 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_907330, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000554 DASVHM010000000
VERSION     DASVHM010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6048
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_907330"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..739
                     /locus_tag="VF308_10370"
     CDS             125..739
                     /locus_tag="VF308_10370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEX7437105.1"
                     /translation="MNLVFDLGGVVLRWQPDEFLMRLLPERAPTRAAGRQLAAAFFQG
                     FGGDWGEFDRGRIEPGLLAERIAARIGLTVDEARHVIDAIPDELQPIPETAGLLRRLH
                     ASGRRLFFLSNMPVPYARHLEASHPVLELFERGVFSSRVGSIKPEPALFAHAAAAFGV
                     DAAQLVLIDDIAANVEAARRAGWHGLLFENVQRCEADLLRLELS"
     gene            917..4357
                     /locus_tag="VF308_10375"
     CDS             917..4357
                     /locus_tag="VF308_10375"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEX7437106.1"
                     /translation="MIRRWRLFPKYALLIITLVGGMLIASGAIGIYFSYRETEAHLVA
                     LQVEKAQSAATRIEQYVLDIEHQLSWTALPRMDGGGDALEQRRIEHLKLLRQAPAITE
                     VAWLDGAGREQLRQSRLAMDAVGSGTDLSQEPKFREAVAGRIYYGPVYFRKGTEPYMT
                     ISRPAGSGGGVPAAEVNLKFVWEVVSRIKIGEAGLAYVIDATGTLIAHPDISLVLKKS
                     DLRSLPQVAALATLGEDAAPLGRNLKGEEVFSAHAPIPTLHWTVFVESPRAETFAPLY
                     ASILRAALLLAAGLLVSMVASFFLARALVRPLQALQEGAARIGAGELERRIEVRTGDE
                     LEGLAEQFNKMGSALKASYAGLERKVEERTAELTESLKQQTATSEVLKLISRSTFDLD
                     VVLRALLESASRLCAAESAVLFRPDGEGNYLPSVIHSVRDEVHVEHLRTHPIRAGEGS
                     ASGRAILHRTTVHIADVRLDPRYERQDLTEAGGYRNVLAVPLLREGQPIGVIALSNSF
                     EGDSFSRSQIELVTTFADQAVIAIENARLFNETKEALHKVEERTAELSEALDYQTAIS
                     DVLRVISQSPDDVAPVFEAILDSASRLFGDPIAAVFRYDGQLVHVVATHNWPAAAIDD
                     ARRLYPAPPNPQMMSGRVILSGQVQSEEDALNDPAYDRPAAGVGHWRRMIGAPLLKDG
                     APIGVIVVAWPEPGPTPQRQADLLKTFADQAVIAIENVRLFNETKEALEQQTATAEVL
                     QVISSSVADAKPVFDKILDSCQRLFAATGLGIYLIDDAGMLLMGGFRGDSLGAVGSVR
                     AVAGTFPRPLEGTATALAIRERRVVHYPDVLADPDVPLPLRRIAEITGSYSIAFAPML
                     WEDRGVGAIQVSRDPPTPFTDKELALLKTFADQAVIAIQNSRLFNEIQAKSRELEMAN
                     KHKSEFLANMSHELRTPLNAIIGFSEVLSEKMFGEVNDKQLEYLLDIHSSGHHLLSLI
                     NDILDLSKIEAGRMELDLAGVNLPMLLDNCTTLVRERASRQGLTLSLEVEAGLGEWVC
                     DIRKLKQIVINLLSNAVKFTPAGGRVSLRARRLVHAVEIAVVDTGVGIAVDQQALVFE
                     EFRQAGGDYLRKSEGTGLGLALAKRFVELHGGSIRVDSEPGRGSTFAFILPERVLEAV
                     "
     gene            4354..4734
                     /locus_tag="VF308_10380"
     CDS             4354..4734
                     /locus_tag="VF308_10380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7437107.1"
                     /translation="MKKILIVEDNEKNMKLVRDILRHNGHTTLEAATGADGVRLARAE
                     RPDLILMDIQLPDIDGIAALGRIREDSSLDATPVVAVSASVMPDDQQKIVASGFDAFI
                     TKPINLKQFQETVQRFLAHGRRQP"
     gene            4731..5834
                     /locus_tag="VF308_10385"
     CDS             4731..5834
                     /locus_tag="VF308_10385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7437108.1"
                     /translation="MSAKILVVDDVALNVKLLADLLAAKGYETCTAASGPEALARLEQ
                     ERPDLVLLDVMMPGMSGYEVCAAIRANPANAMLPVVLVTALDPAQERAKGLDAGADDF
                     LSKPVSQAELLARVRSLLRIKSLYDEVLRRKGELAELNRTLEQRVADGVQQLEKVSRL
                     KRFFSPQLADLIVAGGAEDPLKSHRREITVVFLDLRGFTAFTETADPEEVMGVLGEYH
                     AAMGRLILEHEGTLERFSGDGIMVFFNDPVPIADPAPRAARMALAMQREVARLASGWK
                     KRGYDLLMGVGIAQGFATIGGIGFSGRIDYGAIGTVTNLAARLCGEAQGGEILMSQRV
                     MALLDGVFRAESAGDLALKGFHRAIPAYRLLPV"
BASE COUNT          967 a         2046 c         2074 g          961 t
ORIGIN      
        1 ggggcgtcga actcggcaag gcactgagtg cgcaattgct gccgctgctg gagggcggcg
       61 cagcaagcgc gcggcccggc gagatcgacg cctcgaccgc gggcctgctc cgcagattgc
      121 tcgggtgaac ctcgtcttcg acctcggcgg cgtcgtcttg cgctggcagc cggatgagtt
      181 cctgatgcgc ctcctgcccg agcgcgcgcc gacgcgcgcg gccggccggc agctcgccgc
      241 cgcgttcttc cagggcttcg gcggggactg gggcgaattc gaccggggtc ggatcgagcc
      301 gggcttgctg gccgagcgca tcgccgcgcg catcggcctg acggtcgacg aggcgcgtca
      361 cgtgatcgac gcgatacccg acgagctgca gccgataccc gagaccgccg gactgctgcg
      421 ccggctgcat gcgagcggcc gccggctctt cttcctgtcg aacatgccgg tgccgtatgc
      481 acgccacctc gaagccagcc atcccgtgct cgagctcttc gagcgcggcg tgttctcgtc
      541 gcgtgtcggc tcgatcaagc ccgagccggc gctgttcgcc cacgccgccg cggcgttcgg
      601 cgtcgacgcc gcgcagctcg tgttgatcga cgacatcgcc gccaacgtcg aggccgcgcg
      661 tcgtgcgggc tggcacgggc tgctgttcga gaacgtgcag cgctgcgagg cggatctgct
      721 gcgactggag ctgtcctgag cgcgcacttg cgcgcgcggc gtggctcggc gggcggttcg
      781 ccccgatctg cgcggatcgg ctgcaagacg aaaatagccc atacccgatc gccggccgga
      841 ggtctaatcg ggtcgtcgtc acgcgacctg gaaggaactg catgcagatt gcgctgtgcg
      901 cgggcagggc gatcgaatga tccgccgctg gcgcctgttc ccgaagtacg cgctgctgat
      961 catcacgctg gtgggcggca tgctgatcgc gagcggcgcg attggcatct atttttccta
     1021 tcgcgaaacc gaggcgcacc tcgtcgcgct gcaggtcgag aaggcgcaga gcgcggcgac
     1081 ccgaatcgag cagtacgtgc tcgacatcga gcatcagctc agctggaccg cgttgccacg
     1141 catggacggt ggaggcgacg cgctcgagca gcgccgcatc gagcacttga aactgctgcg
     1201 ccaggcgccg gcgatcaccg aagtcgcgtg gctcgacggc gcgggccgcg agcagctgcg
     1261 ccagtcgcgc ctggcgatgg acgcggtggg cagcggcacc gatctgtcgc aggagccgaa
     1321 gtttcgcgaa gcggtggccg gccgcatcta ttacggcccg gtctatttcc gcaagggcac
     1381 cgagccctac atgacgattt cacggccagc cggcagcggc ggcggcgtgc ccgcggccga
     1441 agtgaacctg aagttcgtct gggaagtggt gtcgcgcatc aagatcggcg aggcgggtct
     1501 ggcctacgtg atcgacgcga ccggcacgct gatcgcacac cccgacatca gcctggtgct
     1561 gaagaagtcc gatctccgct cgctgccgca ggtggccgcg ctggccacgc tcggggagga
     1621 cgcagcgccg ctcgggcgca acctgaaggg cgaggaagtc ttctcggcac atgccccgat
     1681 tcccacgctc cactggaccg tgttcgtcga gtcgcctcgc gccgaaacgt tcgcaccgtt
     1741 gtacgcgtcg atcctgcggg ccgcgctgct gctcgcggcc ggcctgctcg tctcgatggt
     1801 cgcgagcttc ttcctggccc gcgccctggt gcggcccctg caggcgctgc aggaaggcgc
     1861 ggcgcggatc ggcgccggcg aactcgaacg ccggatcgag gtcaggaccg gcgacgagct
     1921 ggagggcctg gccgagcagt tcaacaagat gggctccgcg ctgaaggcgt cgtacgcagg
     1981 cctcgagcgc aaggtcgagg agcgcaccgc cgaactcacc gaatcgttga agcagcagac
     2041 cgccaccagc gaagtgctca agctcatcag ccgctcgacc ttcgatctcg acgtggtcct
     2101 gcgcgccctt ctggaaagcg ccagccgtct gtgcgccgcg gagagcgcgg tgctgttccg
     2161 gccggacggt gaggggaact acctgccttc cgtcatccat tccgtgcggg acgaggtgca
     2221 tgtggagcat cttcgaaccc acccgatccg ggccggtgaa ggcagtgcgt cgggccgcgc
     2281 catcctgcac cggaccacgg tccacatcgc cgacgtccgt ctggatccgc gctatgaaag
     2341 gcaggacctg accgaagcgg gcgggtaccg caacgtgctc gcggtgcctc tgttgcgaga
     2401 aggccagccg atcggcgtga tcgccctcag caacagcttc gagggcgact cgttctcccg
     2461 gagccagatc gagctggtca cgacctttgc cgaccaggcc gtcatcgcga tcgagaacgc
     2521 gcgccttttc aacgagacga aggaggcgct gcacaaggtc gaggagcgca ccgccgagct
     2581 gagcgaagcg ctcgattacc agacagcgat cagcgacgtg ctgcgcgtca tcagtcagtc
     2641 accggacgat gtggcaccgg tgttcgaagc catcctcgac agcgcgtcgc ggctgttcgg
     2701 cgacccgatc gcggccgtgt tccgctacga cgggcagctc gtgcacgtgg tggctacgca
     2761 caactggccg gccgcggcca tcgacgatgc gcggcggctc tacccggccc cgcccaaccc
     2821 gcagatgatg agcggccggg tcatcctttc gggccaggtg cagagcgaag aggacgcgct
     2881 caacgacccc gcctacgacc ggccggcggc cggcgtcggt cactggcggc gcatgatcgg
     2941 cgcgccgctg ctcaaggacg gtgccccgat cggcgtaatc gtcgtcgcct ggcccgagcc
     3001 cggcccgacc ccgcagcgtc aggccgatct gctcaagacc ttcgccgacc aggcggtgat
     3061 cgcgatcgag aacgtgcgct tgttcaacga gacaaaagag gcgctcgagc agcagaccgc
     3121 gaccgccgaa gtgctgcagg tcatcagcag ttcggtggcc gacgccaagc ccgtgttcga
     3181 caagatcctg gacagctgcc agcgcctatt cgcggccacc gggctcggca tctacctgat
     3241 cgacgacgcc ggcatgctgc tgatgggcgg ctttcgcggc gactcattgg gagcggtggg
     3301 ctcggtgcgg gccgtcgcgg gcacgtttcc tcgcccgctg gagggcaccg cgaccgccct
     3361 ggcgatccgc gagcgccgcg tcgtccacta cccggatgtg ctcgccgatc cggacgtacc
     3421 cctgccgttg cgccggatcg cggagatcac gggcagctac tcgattgcct tcgcgccgat
     3481 gctctgggaa gaccgcggcg tcggcgcgat ccaggtttcg cgcgatccgc cgactccgtt
     3541 caccgacaag gaactcgcgc tcctgaagac cttcgccgac caggccgtga tcgcgatcca
     3601 gaactcgcgc cttttcaacg agatccaggc caagagccgc gagctcgaga tggccaacaa
     3661 gcacaagtcg gagtttctcg ccaacatgtc gcacgagctg cgcacgccgc tcaacgccat
     3721 catcggtttc tcggaggtgc tgagtgagaa gatgttcggc gaggtcaacg acaagcagct
     3781 cgagtatctg ctcgacatcc acagctcggg ccatcacctg ctttcgctga tcaacgacat
     3841 cctcgatctg tcgaagatcg aggccggccg gatggagctc gatctcgcgg gcgtcaacct
     3901 gccgatgctg ctcgacaact gcacgaccct cgtgcgcgag cgggcgagcc gccagggcct
     3961 cacgctttcg ctcgaggtcg aggccgggct cggggagtgg gtctgcgaca tccgcaagct
     4021 caagcagatc gtcatcaacc tgctctcgaa cgccgtcaag ttcacgccgg ccggcgggcg
     4081 cgtcagcttg cgtgcgcgcc ggctcgtgca cgcggtggag atcgcggtcg tcgacaccgg
     4141 ggtcggcatc gcggtggacc agcaggcgct cgtcttcgag gagttccgcc aggccggcgg
     4201 cgactacctg cgcaagtcgg aaggcaccgg cctcggcctc gcgctcgcga aacgcttcgt
     4261 cgagctgcac ggcggctcga tccgcgtcga cagcgaaccg ggccggggct ccacctttgc
     4321 attcattctt cccgagcgcg ttttggaggc ggtatgaaga agatcctgat cgtcgaagac
     4381 aacgagaaga acatgaagct ggttcgagac atcctccggc acaacggtca caccacgctc
     4441 gaggcggcga ccggcgcaga cggcgtgcgc ctggcccgcg cggagaggcc cgacctgatc
     4501 ctgatggaca tccagctgcc cgacattgac ggcatcgcgg cactcggccg catccgcgag
     4561 gacagctcgc tcgatgcgac gccggtggtg gcggtgtcgg cctcggtgat gcccgacgac
     4621 cagcagaaga tcgtcgcctc gggcttcgac gcgttcatca ccaagccgat caacctgaag
     4681 cagttccagg agacggtgca gcggttcctg gcgcacgggc gccgacagcc gtgagcgcga
     4741 agatcctcgt cgtcgacgac gtggcgctga acgtcaagct gctcgccgac ctgctcgcgg
     4801 cgaagggcta cgagacgtgc accgcggcgt cggggcccga ggcgctggcc cggctcgagc
     4861 aggagcggcc cgacctagtg ctgctcgacg tgatgatgcc gggcatgagc ggctacgagg
     4921 tctgcgcggc gatccgcgcg aacccggcca acgcgatgct gccggtcgtg ctcgtgacgg
     4981 cgctcgaccc ggcccaggag cgcgccaagg gtctggacgc cggcgccgac gatttcctga
     5041 gcaagccggt gagccaggcc gagttgctcg cgcgggtgcg gtcgctgctg cgcatcaagt
     5101 cgctctacga cgaggtgctg cgccggaagg gtgaactcgc ggaactcaat cgcacgctcg
     5161 agcagcgcgt ggccgacggc gtgcagcaac tggagaaggt cagccggctg aagcgcttct
     5221 tctcgccgca gctcgctgac ctgatcgtcg ccggcggggc cgaggatccg ctgaaaagcc
     5281 accgccgcga gatcaccgtc gtcttcctcg atctgcgcgg tttcaccgcg ttcaccgaga
     5341 ccgccgatcc ggaggaggtg atgggtgtgc tgggcgaata ccatgccgcg atggggcgcc
     5401 tgatcctcga acacgaaggc accctcgagc gcttctcggg cgacggcatc atggtcttct
     5461 tcaacgaccc ggtcccgatc gccgacccgg cgccgcgcgc ggcgcgcatg gcgctcgcga
     5521 tgcagcgcga ggtcgctcgg ctcgccagcg gctggaagaa gcgcggctat gacctgctga
     5581 tgggcgtggg catcgcccag ggcttcgcga ccatcggcgg catcggtttt tccgggcgca
     5641 tcgactatgg cgcgatcggc accgtgacga acctcgccgc gcgcctttgc ggcgaggcgc
     5701 agggaggcga aatactgatg tcgcagcgtg tgatggcctt gctcgacggc gtgtttcgcg
     5761 cggagtctgc cggcgatctc gccctgaaag gatttcatcg cgccatcccg gcgtatcgcc
     5821 tcctgcccgt gtaagaggcg tcgcaccagg cgggcaaggt gccgcctagc gcgcggatca
     5881 ggtcggcgcc gccatcccgc gcacggcgcc gcgcgccgca tcgagcgcct gttcgacgat
     5941 gcgctccttc caggcatcgg tgtcgatgta gaacgcgtcg cggacctgtt gcttgatggt
     6001 gcggcgttgt tcctcgctcg cctcgggatg gttctcgagc cactggtc
//
LOCUS       DASVHM010000555         3250 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_255502, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000555 DASVHM010000000
VERSION     DASVHM010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3250
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255502"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="VF308_10390"
     CDS             <1..254
                     /locus_tag="VF308_10390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006393537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437109.1"
                     /translation="VVPKPDAERGALVKAFVVLAPGFAASSDLAVELQAHVRGKLAPY
                     EYPKEIEFIDALPMTTTGKVQRRVLRLREAEKAKAPRSE"
     gene            complement(285..719)
                     /locus_tag="VF308_10395"
     CDS             complement(285..719)
                     /locus_tag="VF308_10395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007865179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX7437110.1"
                     /translation="MIVRRIAIASILATGALAIAGCGMMDSKGAGGTMSVPLSGQNEV
                     PPNASGGSGTGKVELDGNVIKWTVTYSGTSGPITAGHFHGPAAAGANAGVVVPFAGPL
                     ASPIVGSATLTPAQVDQVKQGLWYINLHTAANPGGELRGQVK"
     gene            827..1732
                     /locus_tag="VF308_10400"
     CDS             827..1732
                     /locus_tag="VF308_10400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012747335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEX7437111.1"
                     /translation="MDRPSLFALCRQAVEAWVDDYASSMGAALAYYTLFSIAPLLLIV
                     ISIAGLVFGADAARGQIFAELRELMGEDGAAAAQALLQSVNKPAQGVLGTIVGVLLLG
                     VGAISVFGQLQNALDRIWRAPGRAGSGGLWALVRARLLSFGMVLGIGFLLIVSLVASA
                     AVAALGKYSAPLLGSWGVVAELLNLVVSFALVTVTFAMIYKIIPRVRIGWRDVWIGAA
                     VTALLFAIGKSLIGFYLGRSTFASGFGAAGSLVVLLVWMYYSAQIFLLGAEFTKAYAY
                     ACGSCSDMPGSAVAGLDGRSPVSGN"
     gene            1945..2727
                     /locus_tag="VF308_10405"
     CDS             1945..2727
                     /locus_tag="VF308_10405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437112.1"
                     /translation="MLGTAGLAFYVLRAPPQDAVALTPHTESTLVPSAMNVYTPKAET
                     APASVPAPKAIAPPAVWLSETNTLRSEYQRFKRLGTPAAKLAAYKLAEECKWEHTRLS
                     DPGNQFDATKCGDLEPGDFDDGKERLALLIPAALNGEPGAWWRLVSREGPRGVFKSMP
                     AGPEYDRVEEQAHLAALKAADPLALAAEYGANKETDPAKALAQFAAFRYARQVYSGGT
                     PFDPATETPAWAKSLPASVQTKAIAEGQQFAASAIANRSKQQ"
     gene            2724..>3250
                     /locus_tag="VF308_10410"
     CDS             2724..>3250
                     /locus_tag="VF308_10410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437113.1"
                     /translation="MKRTRIAAALAGILLATSTVAPSYALTVWGTAPVTGWIEPPHVV
                     LDAIDLPGVTVTCTFSCWRENMVIIEIRVRSGNTLLPPIVSMIDPKDVGIKFPDPKPP
                     TQPKAECVADCNTEQAMANDLCDIATAENSRTVYGYSVVAGIATAGLVARSGGPAGAL
                     AAIPVGYAAYKGVKGV"
BASE COUNT          502 a         1078 c         1125 g          545 t
ORIGIN      
        1 cggtcgtgcc caagcccgac gccgagcgcg gcgccctcgt caaagcgttc gtggtcctgg
       61 cgcccggctt cgccgcgtcg agcgacctcg cggtcgagct gcaggcgcac gttcgcggca
      121 agctcgcgcc ctacgagtac ccgaaggaga tcgagttcat cgacgccctg ccgatgacga
      181 cgacgggcaa ggtgcagcgc cgcgtcctgc gcctgcgcga ggcggaaaaa gcgaaggcgc
      241 cgcggtcgga gtgaccggcg gcgcctcggc gcgggagaag aggcttactt gacctggccg
      301 cgcaactctc cgcccgggtt ggcggcagtg tgcaggttga tgtaccagag gccctgcttg
      361 acctggtcga cctgcgccgg ggtcagcgtc gccgacccga cgatcgggct ggcgagcggg
      421 ccggcgaacg gcacgacgac gccggcgttc gcgcccgccg cggccgggcc gtggaagtgg
      481 ccggcggtaa tcgggccgct cgttccggag tacgtcacgg tccacttgat gacgttgccg
      541 tcgagctcga ccttgccggt gcccgagccg ccgctggcgt tcggcggcac ttcgttctgg
      601 cccgagaggg gcacggacat ggtgccgccc gctcccttgg aatccatcat gccgcagccg
      661 gcgatggcga gggcgccggt ggcgagaatc gaggcgatgg cgatacggcg aacgatcatg
      721 gttctttctc ctgcggttgg ggggccggcg cgcgcggggt ggcacgcgcc tgaccttgcg
      781 aaccatgata gagcgttccc tgcccggccg ctcccgggtt gacaccatgg atcgcccgtc
      841 gctcttcgcg ctctgccgcc aggccgtcga agcctgggtc gacgactacg cgtcgagcat
      901 gggcgcggcg ctcgcgtact acacgctgtt ctcgatcgcg ccgctgctgc tcatcgtcat
      961 ctcgatcgcc ggcctcgtct tcggcgccga cgcggcgcgc ggccagatct tcgccgagct
     1021 gcgcgagctg atgggcgaag acggcgcggc cgcggcgcag gcgctgctgc aaagcgtcaa
     1081 caagccggcg cagggcgtgc tcggcacgat cgtcggcgtc ctcctcctcg gcgtcggcgc
     1141 gatttcggtc ttcggccagc tgcagaacgc gctcgaccgc atctggcgcg cgccggggcg
     1201 cgccggcagc ggcggcctgt gggcgctcgt ccgcgcccgc ctgctctcgt tcgggatggt
     1261 gctcggcatc ggcttcttgc tcatcgtctc gttggtcgcg agcgccgccg tcgccgcgct
     1321 cggcaagtac tcggcgccgc tgctcggcag ctggggcgtc gtcgcggagc tgctgaacct
     1381 cgtcgtcagc ttcgccctcg tcacggtgac cttcgcgatg atctacaaga tcatcccgcg
     1441 agtgcgcatc ggctggcgcg acgtctggat cggcgcggcg gtgacggcgc tgctgttcgc
     1501 gatcggcaag tcgctgatcg gtttctacct cgggcgcagc acgttcgcgt cgggtttcgg
     1561 ggccgcgggg tcgctcgttg tcctgctcgt ctggatgtac tactcggcgc agatttttct
     1621 gctgggggcg gagttcacga aggcttatgc gtatgcatgc ggctcgtgct ctgacatgcc
     1681 ggggtctgcg gttgctgggc ttgacgggcg gtcgccagtg tctgggaact aatcttctgc
     1741 ccggtcgcgc aatatgacgc ggtggatgcg ccgggacggg ccgacgccga tggtcgagat
     1801 ccctccatcg tgtgcaccca tggagcgaat ggaaacccct catacgtttg cttcgaaact
     1861 ttgagaacct agttagagcc ggcagtcgcc ggcgacgcag gaggtctcat gagagttagg
     1921 ctgaagcttg ccgcggcaat cgtcgtgctc ggcacggcgg gcctggcctt ttatgtgctc
     1981 cgggccccgc cacaagatgc ggtcgcgcta actccgcaca ccgagtcgac gcttgtgccg
     2041 agcgcgatga acgtctacac accgaaggcc gagacggcgc ccgcgtcggt gcccgcgccg
     2101 aaagcgatcg cgccgcctgc cgtgtggctc agcgagacga acacccttcg atcggagtac
     2161 cagcgcttca agcgtctcgg cactccggcg gcgaagctcg cggcctacaa gctcgcggaa
     2221 gagtgcaagt gggagcacac gcggctgtcc gaccctggga accagttcga cgcgacgaag
     2281 tgcggtgacc tcgagccggg agatttcgac gacgggaagg aacgtcttgc cctgctaatt
     2341 cctgccgcgc tcaacggaga gccgggggcg tggtggcgac tcgtgtcgcg cgaaggaccg
     2401 agaggcgtct tcaagtcgat gccagccggt cccgagtacg accgcgtcga agagcaggcg
     2461 cacctcgccg ccttgaaggc ggcggacccg ctcgccctgg cagccgagta tggcgccaac
     2521 aaggaaaccg accccgcgaa ggcgctcgcg cagttcgctg cattccgcta cgcgcggcag
     2581 gtctattcag gcggcacgcc gttcgacccc gccaccgaaa cgccggcgtg ggcaaagtcc
     2641 ctgccggcta gcgtccagac caaagcgatc gcggaaggcc agcaattcgc agccagtgca
     2701 atcgcgaacc ggagcaagca gcaatgaagc gcacccgtat cgcagccgca ctcgccggca
     2761 tacttctcgc gacctcgacc gtcgctcctt cctacgctct gacggtgtgg ggcacggcgc
     2821 cggtgacggg gtggattgag ccgccgcacg tcgtcttgga cgcgattgac ttgccggggg
     2881 tcaccgtcac ttgcaccttt tcgtgctggc gcgaaaacat ggtcatcatc gagatcaggg
     2941 taagaagtgg caacacactc ttaccgccaa tcgtctcgat gatcgacccg aaggacgtcg
     3001 gcatcaaatt ccctgacccg aagccgccga cgcaaccgaa agccgaatgc gtcgccgact
     3061 gcaatacgga gcaggcgatg gcgaacgact tgtgcgacat cgcgacggcg gagaactcgc
     3121 gaacggtgta cggctacagc gtcgtcgcgg gcatcgcgac cgccggcctt gtcgcgcgaa
     3181 gtggcggccc cgcgggcgca cttgcggcga tccctgtcgg gtacgccgct tacaagggtg
     3241 tgaagggcgt
//
LOCUS       DASVHM010000556         1635 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1193425, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000556 DASVHM010000000
VERSION     DASVHM010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1193425"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..202)
                     /locus_tag="VF308_10415"
     CDS             complement(<1..202)
                     /locus_tag="VF308_10415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HEX7437114.1"
                     /translation="MTSITTETGSNGHTGALFEGLAVPADSAAALKRSAPRGAPRVQS
                     AVRNQVELRACDLDAALPCDHQA"
     gene            complement(328..1251)
                     /locus_tag="VF308_10420"
     CDS             complement(328..1251)
                     /locus_tag="VF308_10420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008333820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7437115.1"
                     /translation="MPTRPAPRAPWIAYLCLGSSMAVVGSYVGLSKVLVAVFPVFLLA
                     WLRFGISAVAMAGWLRAPRDEKALSSRERGLLFVESFFGNFLFSICMLFGVALSSALA
                     AGVIMAALPAVVAILSKLFLRERIAPRVSLGIACAVGGIVLVSLSRHADSSGSSSVLG
                     NLLLFGAVCCEAIYVVVGKLLTGLVGPKRISALINLWGFTLVAPLGLWQALGFDFGAV
                     AASSWSLLVGYSIAASMVTVWLWMTGLEHVDAASAGTFTVLLPISAAGVGVVFLGERF
                     SAVQAVAFALALAGIVLATWPECARSERLRE"
     gene            complement(1288..>1635)
                     /locus_tag="VF308_10425"
     CDS             complement(1288..>1635)
                     /locus_tag="VF308_10425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX7437116.1"
                     /translation="AQLEEAAMDLGARPWQVFHLVTLPMIAQALLSAWLLTFTLSLDD
                     VVLSAFLSGPGATTMPLVIFSRARLGLNPSVNAVATLIVLVVSVGVVVASWVIARQER
                     QRAKDVAAAAGAA"
BASE COUNT          316 a          551 c          576 g          192 t
ORIGIN      
        1 gggcctggtg gtcgcagggc aacgccgcgt caaggtcgca ggcacgcagt tcgacttggt
       61 tgcgcaccgc gctttgtacg cgcggcgcac ctctgggcgc gctccgcttc agcgcagcag
      121 cgctgtccgc aggaacagcc aggccctcga acagtgcacc tgtgtgcccg ttcgatcccg
      181 tctcggtcgt gatgctggtc atgccaaaag acatgcagca tccgtgccgc tatttgttca
      241 cagtctctga gcgtcgcaat cagtcggtgt cgtatgccaa cagccaagcc agtcgcgtgc
      301 cagctcgaac agcttggaga aatactctca ctctctcaag cgctcggagc gggcgcattc
      361 gggccaggtg gcgaggacga tgccggccag ggcgagcgcg aaggcgacgg cctgaaccgc
      421 gctgaagcgc tcgccgagga agaccacgcc gaccccggcc gcactgatcg gcaacagcac
      481 cgtgaacgtg ccggcggaag cggcgtcgac gtgctcgagc ccggtcatcc agagccagac
      541 cgtgaccatg ctggcggcga tcgaatagcc cacgagcagg ctccacgagg aagcggcgac
      601 cgcgccgaaa tcgaagccca gggcctgcca gaggccgagc ggcgcgacga gggtgaagcc
      661 ccagaggttg atcagggcgc tgatccgctt cggcccgacg aggccggtca gcagcttgcc
      721 gacgacgacg tagatcgcct cgcagcagac cgccccgaac aggagcaggt tgccgagcac
      781 cgaactcgac ccgctgctgt cggcatggcg gctgagtgac accagcacga tgcccccgac
      841 ggcgcacgcg atgccgagcg acacgcgcgg cgcgatgcgc tcgcgcagaa atagcttcga
      901 gaggatcgcg acgaccgccg gaagcgcggc catgatgacc ccggcggcca gcgccgaact
      961 cagcgccacc ccgaagagca tgcagatcga gaacaggaag ttgccgaaga acgactcgac
     1021 gaagaggagg ccgcgttcgc gactggagag cgccttctcg tcgcgcggcg cgcgcagcca
     1081 gccggccatc gcgaccgccg agatgccgaa gcgcagccag gcgagcagga acaccgggaa
     1141 gaccgcgacg agcactttgg aaaggcccac gtagctgccg accaccgcca tgctcgagcc
     1201 gaggcagagg taggcgatcc agggcgcgcg gggcgcgggg cgggtcggca ttcgggagcg
     1261 gcgcggcgtg agcgcgagcc cgggcgctca ggccgccccg gcggcagcgg ccacgtcctt
     1321 cgcgcgctgg cgttcctggc gcgcgatgac ccagctcgcg acgacgacac cgaccgacac
     1381 gacgagcacg atcagggtcg cgaccgcatt gacgctcgga ttgaggccga ggcgggcgcg
     1441 cgagaagatc acgagcggca tcgtcgtcgc cccgggtccg gacaggaacg ccgagagcac
     1501 cacgtcgtcg agcgagagcg tgaaggtcag cagccacgcc gagagcagcg cctgcgcgat
     1561 catcggcaag gtgacgaggt gaaagacctg ccaggggcgc gcgccgaggt ccatcgccgc
     1621 ttcctcgagc tgggc
//
LOCUS       DASVHM010000557         1577 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_689656, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000557 DASVHM010000000
VERSION     DASVHM010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_689656"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1216
                     /gene="accC"
                     /locus_tag="VF308_10430"
     CDS             <1..1216
                     /gene="accC"
                     /locus_tag="VF308_10430"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008904757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEX7437117.1"
                     /translation="DEAVCIGPPASAQSYLNMPAIIATAEVTDAEAIHPGYGFLAENA
                     DFAERVERSGFVFIGPTPDAIRIMGDKVAAKQAMIKAGVPCVPGSEGALPDDPKEAIR
                     AARAIGYPVIIKAAGGGGGRGMRVVHTEAALVSAVQMTRAEAGAAFGNPAVYMEKFLE
                     NPRHIEIQVLADTHKNVLWLGERDCSMQRRHQKIIEEAPAPGIARRAIEKVGERCVAA
                     CKRIGYRGAGTFEFLYEDGEFFFIEMNTRIQVEHPVTEWVTGIDIVQMQIRIAAGEKL
                     TIQQRNVQCRGHAIECRINAEDPYKFTPSPGRVTMWHPPGGPGVRVDSHAYTNYVVPP
                     NYDSMIGKIIVHGDTRDQALARMRTALSETVVEGILTNIPLHRELMVDAKFIEGGTSI
                     HYLEGWLDQHKR"
     gene            1225..>1577
                     /locus_tag="VF308_10435"
     CDS             1225..>1577
                     /locus_tag="VF308_10435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437118.1"
                     /translation="MHALTVLVAAASVDAVSDLLSEQHAALSVSIEDADAGSAAERPV
                     FDEPGTGDGARWQRARLTALFGDEAGATGAAQRPVQRRGRGDGGGGRAGGEPVRPGRA
                     DRSDRAGRRPRLGPP"
BASE COUNT          268 a          545 c          545 g          219 t
ORIGIN      
        1 cgacgaggcc gtctgcatcg gcccgccggc ttcggcgcaa agctacctca acatgccggc
       61 gatcatcgcc acggccgagg tgaccgacgc cgaggcgatc catcccggct acggcttcct
      121 cgccgagaac gccgatttcg ccgagcgcgt cgagcgcagc ggtttcgtct tcatcggccc
      181 cacgccggac gcgatccgca tcatgggcga caaggtcgcg gcgaagcagg caatgatcaa
      241 ggcgggcgtg ccctgcgtgc ccggctccga aggggcgctg cccgacgacc ccaaggaggc
      301 gatccgcgct gcgcgggcga tcggctatcc ggtcatcatc aaggcggccg gtggcggcgg
      361 gggccgcggc atgcgggtcg tccacaccga ggccgccctg gtttcggcgg tgcagatgac
      421 gcgagccgaa gccggggcgg ccttcggcaa tccggccgtc tacatggaga aattcctcga
      481 gaacccgcgc catatcgaga tccaggtact cgccgacacg cacaagaacg tgctctggct
      541 cggcgaacgc gactgctcga tgcagcgccg gcaccagaaa atcatcgagg aagcgcccgc
      601 gccgggaatc gcgcgccgtg cgatcgagaa ggtcggcgag cgctgcgtcg ccgcctgcaa
      661 gcggatcggc tatcgcggcg ccggcacctt cgagttcctc tacgaggacg gcgagttctt
      721 cttcatcgag atgaacacgc gcatccaggt cgagcacccg gtgaccgagt gggtgaccgg
      781 catcgacatc gtgcagatgc agatccggat cgccgccggc gagaagctga cgatccagca
      841 gcgcaacgtg cagtgccgcg gccatgcgat cgagtgccgc atcaatgccg aagatcccta
      901 caagttcacc ccctcgcccg ggcgggtgac gatgtggcac ccgcccggcg gcccgggagt
      961 tcgcgtcgat tcgcacgcct acacgaacta tgtcgtgccg ccgaactacg actcgatgat
     1021 cggcaagatc atcgtccatg gcgatacccg cgatcaggcc ctggcgcgga tgcgcaccgc
     1081 cctgtccgaa acggtcgtcg agggcatcct gaccaacatc ccgctgcacc gcgagctgat
     1141 ggtcgacgcc aagttcatcg agggcgggac cagcatccac tacctcgaag gctggctcga
     1201 tcagcacaag cgctgacgcc ggcgatgcac gcgctgacgg tactcgtcgc tgccgcgtcg
     1261 gtcgatgcgg tgtcggatct gctctcggag caacacgccg cgctctcggt ttcgatcgaa
     1321 gacgccgatg cgggcagcgc tgccgagcgg ccggtgttcg acgagccggg aaccggcgac
     1381 ggcgcccgct ggcagcgggc tcgcctgacc gcgctgttcg gcgacgaggc cggcgcgacg
     1441 ggcgcggctc agcgccctgt tcagcgacga ggccggggcg acggcggcgg cggccgggct
     1501 ggcggcgagc ccgtccggcc gggacgcgcg gatcgaagcg atcgcgccgg tcgacgaccg
     1561 cgactgggtc cgcctga
//
LOCUS       DASVHM010000558         2888 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_833631, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000558 DASVHM010000000
VERSION     DASVHM010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2888
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_833631"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(130..831)
                     /gene="lipB"
                     /locus_tag="VF308_10440"
     CDS             complement(130..831)
                     /gene="lipB"
                     /locus_tag="VF308_10440"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016979 - lipoate-protein ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HEX7437119.1"
                     /translation="MSGPQLRRLGRVDCAETIAGMRAYTEGRGPATPDEVWLCEHPPV
                     YTLGLAGRADHVLDPRAIPVVQTNRGGQVTYHGPGQVVAYPLVDLKRLDIYVKEYVYR
                     LEQAVLRTLETYGVTGHRVAGAPGIYVRLADPFGHAALDQRRPAERQGARTAAPSFAG
                     LAKIAALGIKVSRNCSYHGVALNVAMDLRPFAGIDPCGYPGLATVDLSTIGVQVPLDD
                     VAGTLGAKLAATLSP"
     gene            complement(847..1365)
                     /locus_tag="VF308_10445"
     CDS             complement(847..1365)
                     /locus_tag="VF308_10445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012217790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX7437120.1"
                     /translation="MVEFIDALAFAAAKHRNQRRKDVDASPYINHPIELARVLSAEGG
                     VLERLPLLAALLHDTIEDTETTEAELAARFGPKVAAVVLEVTDDTSLPKSRRKDLQVE
                     HAPHVSREAQLVKLADKICNLRDVAFNPPAQWSLERRREYFDWGARVIDGVRGVHPKL
                     EAIFDSAYALRP"
     gene            complement(1434..1709)
                     /locus_tag="VF308_10450"
     CDS             complement(1434..1709)
                     /locus_tag="VF308_10450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 family protein"
                     /protein_id="HEX7437121.1"
                     /translation="MQDIPPEQSLIEYPSQFPIKVMGSNVVGFADAVIAVARKFDPFL
                     DPATVESRLSTAGKYLSLTVTITATSREQLDELYRTLSTHPLVKVVL"
     gene            complement(1792..2679)
                     /locus_tag="VF308_10455"
     CDS             complement(1792..2679)
                     /locus_tag="VF308_10455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEX7437122.1"
                     /translation="MQTIPDTLCYLNGEYGSLRDTKVSVLDRGFIFGDGVYEIVPAYG
                     GKLFRFDEHMARLSRSLAKVRIANPLRPEQWLERARKLAAALIEKTGAPDQLIYIQVT
                     RGVALRDHVMPEGIEPTVFMMASVMKPPSAEQRHRGVACVSARDFRWELGDIKSISLL
                     GNVLARQISADHGALETVMFRDGFLTEASGSNVWVVHEGAVLGPPKSEHVLEGIRYEL
                     IRELCEECGIAFNLRPIPEADVLSADELLLSSATKEVLPVTTLDAEPVGHGALRGKPG
                     PVYGRLYEAYQRAKLAQSI"
     gene            complement(2705..>2888)
                     /locus_tag="VF308_10460"
     CDS             complement(2705..>2888)
                     /locus_tag="VF308_10460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016448517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEX7437123.1"
                     /translation="KVERTDPLVAPLAKGQRVGRILVSTAGGTPVVEVPLVALEPVEQ
                     AGFFGRAWDALRLWIK"
BASE COUNT          437 a          971 c          999 g          481 t
ORIGIN      
        1 aggccggctt cttcagcgtc tcggcagcga cgatcttgat cggaatgcgc gaggtcttgg
       61 cttccgcctt ctgcttggcg ttcggatcgt agggcgtcgt gtcggcaggg gcctgcaagg
      121 gatgctccat caagggctca gggtggcggc cagcttggcg ccgagagtcc cggcgacatc
      181 gtcgagcggc acctgaaccc cgattgtaga aaggtcgacc gtcgcgagtc ccgggtagcc
      241 gcacgggtcg atgccggcga agggccgcag gtccatcgcg acgttgaggg cgacgccgtg
      301 gtagctgcag ttgcggctca ccttgatgcc cagcgcggcg atcttcgcga ggccggcgaa
      361 cgaaggcgcg gcggtcctcg cgccctgccg ctcggccggg cggcgctgat ccagcgcggc
      421 atggccgaac gggtcggcca ggcgcacgta gatgccgggt gcgccggcga cccgatgccc
      481 cgtcacgccg taggtctcga gggtgcgcag cacggcctgc tcgagccggt agacgtattc
      541 cttgacgtag atgtcgagcc gtttcaggtc gaccagcgga taggcgacga cctgcccggg
      601 cccgtggtac gtgacctggc cgccgcgatt cgtctggacg acgggaatgg cgcgcgggtc
      661 gagcacgtgg tccgcccggc ccgccaggcc cagcgtgtag accggcgggt gctcgcacaa
      721 ccagacctcg tcgggcgtgg ccggaccgcg cccttcggta taggcgcgca tcccggcgat
      781 cgtctcggca cagtcgacgc ggccgagacg gcgcagctgc ggcccgctca tgccgactcc
      841 ttcatctcag ggccgcaacg cgtacgccga atcgaatatc gcttcgagtt tcgggtgcac
      901 gccccggacc ccgtcgatca cgcgcgcgcc ccagtcgaag tattcgcggc ggcgttcgag
      961 cgaccactgc gcgggcgggt tgaacgcgac gtcgcgcagg ttgcagatct tgtccgccag
     1021 cttgacgagc tgggcctccc ggctcacgtg cggcgcgtgt tcgacctgca ggtccttgcg
     1081 ccgcgatttc ggcagcgacg tatcgtcggt gacctccagc acgacggccg cgaccttcgg
     1141 gccgaagcgt gccgcgagct cggcctcggt ggtttcggtg tcctcgatcg tgtcgtgcag
     1201 caaggcggcg agcagcggca ggcgttcaag gacgccgcct tcggcgctca ggacgcgcgc
     1261 aagctcgatc ggatgattga tgtacggcga cgcatcgacg tccttgcgac gctggttgcg
     1321 gtgcttggcg gcggcgaacg ccagcgcgtc tatgaactcg accaggaaag gttccacgtc
     1381 ggcattgtcg cgccgctgcc cgcccggtgc agagtgcgcc gctgccggcc gcgctacagc
     1441 acgaccttga ccagcggatg ggtcgagagc gtgcggtaca gctcgtcgag ctgctcgcga
     1501 ctggtcgccg tgatcgtcac cgtgaggctc aggtacttgc cggccgtgct gagacggctc
     1561 tcgaccgtgg ccggatcgag gaacggatcg aacttgcggg cgacggcgat caccgcgtcg
     1621 gcgaagccga cgacgttgct ccccatcacc ttgatcggga actgcgatgg gtattcgatc
     1681 agcgactgct cgggcggaat gtcttgcatc gtgagattca tgccatctca tgtagggtca
     1741 tttcgcggcg agtcaacacc cgcacgacag cgccgctgcc cgcctccccg ctcagatcga
     1801 ctgggccagc ttggcgcgct gataggcctc gtagagccgc ccatagaccg ggcccggctt
     1861 gccgcgcagc gccccgtggc cgaccggttc ggcgtcgagg gtggtcaccg gaagcacttc
     1921 cttcgtggcc gagctgagca gcaactcgtc ggccgagagc acgtcggcct cgggaatcgg
     1981 ccgcaggttg aaggcgatgc cgcactcctc gcacagctcg cgaatcagct cgtagcggat
     2041 gccttcgagc acatgctcgc tcttcggcgg cccgagcacc gcgccctcat gcacgaccca
     2101 gacattgctg cccgatgcct cggtcaggaa accatcgcga aacatcaccg tctcgagcgc
     2161 cccgtggtcg gccgagatct gccgcgccag cacgttgccg agcagcgaga tactcttgat
     2221 gtcgccgagc tcccagcgga agtcgcgcgc gctgacgcag gccacgcccc tgtggcgctg
     2281 ctcggccgag ggcggcttca tcacgctcgc catcatgaag acggtgggct cgatgccctc
     2341 gggcatcacg tggtcgcgca gcgcgacgcc gcgcgtgacc tggatgtaga tgagctggtc
     2401 gggtgcgccg gtcttctcga tcagcgccgc ggcgagcttg cgggcgcgct ccagccactg
     2461 ctccggcctc agcggattgg cgatgcgcac tttcgcgagg ctgcgcgaga ggcgcgccat
     2521 gtgctcgtcg aagcggaaga gcttgccgcc gtacgccggc acgatctcgt agacgccatc
     2581 gccgaagatg aagccgcggt cgagcaccga gaccttggtg tcgcgcagcg acccgtactc
     2641 gccgttgagg tagcaaaggg tgtctggaat tgtttgcatc gtgtcctgcc gccgtgtgct
     2701 cagcttactt gatccagagg cgcagggcat cccatgcacg cccgaagaag ccggcttgct
     2761 cgaccggctc gagcgcgacc agcggcacct cgacgacggg agtgccgccc gccgtgctca
     2821 ccaggatcct gcccacacgc tggcccttgg cgagcggcgc gacgagcgga tcggtgcgct
     2881 cgaccttg
//
LOCUS       DASVHM010000559         2840 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1267137, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000559 DASVHM010000000
VERSION     DASVHM010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2840
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1267137"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..104)
                     /gene="rpmJ"
                     /locus_tag="VF308_10465"
     CDS             complement(<1..104)
                     /gene="rpmJ"
                     /locus_tag="VF308_10465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEX7437124.1"
                     /translation="MKVAASVKKMCRHCKVVRRKGVVRVICTDPRHKQR"
     gene            complement(127..345)
                     /gene="infA"
                     /locus_tag="VF308_10470"
     CDS             complement(127..345)
                     /gene="infA"
                     /locus_tag="VF308_10470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018149800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEX7437125.1"
                     /translation="MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMHY
                     IRILPGDKVTVELTPYDLTRARIVFRAK"
     gene            complement(405..1715)
                     /gene="secY"
                     /locus_tag="VF308_10475"
     CDS             complement(405..1715)
                     /gene="secY"
                     /locus_tag="VF308_10475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEX7437126.1"
                     /translation="MATNANQLAKSGKFGDLRRRLFFLLGALVVYRVGAHIPVPGIDP
                     NALQSLFQGQQGGILSLFNMFSGGALSRFTVFALGIMPYISASIIMQLMTYVVPTLET
                     LKKEGESGRRKITQYTRYGTLGLALFQSLGIALALEGSPGLVIVPGFGFRLTAVVSLV
                     AGTMFLMWLGEQITERGLGNGISILIFSGIAAGLPNALGQFGSLVNQGSMSIVAAIFI
                     TLLVFAVTFAVVFVERGQRKILVNYAKRQVGNKVYGGQSSHLPLKLNMSGVIPPIFAS
                     SIILLPTTAVSWFATGDGLRWLKDLASLLAPGQPIYVMLYAAAIVFFCFFYTALVFNS
                     RETADNLKKSGAFIPGIRPGDQTARHIDRILSRLTLAGAIYITAVCLLPEFLVLKYNV
                     PFYFGGTSLLIIVVVTMDFWAQVQSYVMSQQYESLLKKANFKAS"
     gene            complement(1738..2172)
                     /gene="rplO"
                     /locus_tag="VF308_10480"
     CDS             complement(1738..2172)
                     /gene="rplO"
                     /locus_tag="VF308_10480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011799768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEX7437127.1"
                     /translation="MELNSIKPAEGAKKARRRVGRGIGSGLGKTAGRGHKGQKSRSGG
                     YHKVGFEGGQMPLQRRLPKRGFKSQSAKYNAEITLGELERLGAAEVDMLTLKQAKLIG
                     EMTKNVKVIKSGALTIKVALSGGILATAGAKAAIEAAGGSVA"
     gene            complement(2192..2386)
                     /gene="rpmD"
                     /locus_tag="VF308_10485"
     CDS             complement(2192..2386)
                     /gene="rpmD"
                     /locus_tag="VF308_10485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014615926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEX7437128.1"
                     /translation="MNDKSADKKTVKIKLVKSVAGTRESHRATVRGLGLRKTQSVSTL
                     EDTPSVRGMIEKVSYLVKVL"
     gene            complement(2401..>2840)
                     /gene="rpsE"
                     /locus_tag="VF308_10490"
     CDS             complement(2401..>2840)
                     /gene="rpsE"
                     /locus_tag="VF308_10490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011002906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEX7437129.1"
                     /translation="TKVVKGGRTLSFAALTVVGDGDGRVGMGKGKAKEVPVSVTKAME
                     SARRNMIKVQLKNGTIHHKVVGEHGASRVLMAPAKPGDGIIAGGPMRAVFEVMGVTDI
                     VCKSLGSSNPYNIVRATLDGLKRCSTPAEIAAKRGLTVEEIVG"
BASE COUNT          448 a          921 c          926 g          545 t
ORIGIN      
        1 cgctgcttgt gacgcgggtc ggtgcagatc acgcgcacga cgcccttgcg ccgcacgacc
       61 ttgcaatgac ggcacatctt cttgaccgat gctgcgactt tcatttccag ctcctcgttt
      121 cttctctcac ttggcgcgga acacgatgcg tgcccgcgtc aggtcgtacg gcgtcaactc
      181 gacggtgacc ttgtcgcccg gcaggatgcg gatgtagtgc atgcgcatct ttcccgagat
      241 gtggccgagc acgacatggc cgttttccag cttcacacgg aacgtggcgt tggggagatt
      301 ctcgagaatc tcgccctgca tctgaatgac atcgtctttc gccatgcgtt ccgcgtcggg
      361 ggtccttcgg tttgggtgtt cgtttcgggt ggatcggagg cgagtcagct cgccttgaaa
      421 ttggccttct tcagcagcga ctcgtactgc tggctcatca cgtagctctg cacctgcgcc
      481 cagaagtcca tcgtcacgac gacgatgatc agcagcgacg tgccgccgaa gtagaacggc
      541 acgttgtatt tgaggacgag gaactccggc agcaagcaca ccgccgtgat gtaaatggca
      601 ccggccagcg tcaggcgact caggatccgg tcgatgtggc gcgccgtctg gtcgcccggg
      661 cggattcccg ggatgaaggc gccgctcttc ttcaggttgt cggccgtctc gcggctgttg
      721 aagacgagcg cggtatagaa gaagcagaag aagacgatcg ccgcggcgta gagcatgacg
      781 tagatcggct ggcccggcgc gagcagcgag gcgaggtcct tcagccagcg caggccgtcg
      841 ccggtcgcga accagctcac cgccgtcgtc ggcagcagga tgatcgacga cgcgaagatc
      901 ggcgggatca cgcccgacat gttgagcttg agcggcaggt gcgacgactg gccgccgtag
      961 accttgttgc cgacctggcg cttggcgtag ttgacgagga tcttgcgctg gccgcgctcg
     1021 acgaacacca ccgcgaaggt gaccgcgaag acgagcaggg tgatgaagat cgcggcgacg
     1081 atcgacatcg agccctggtt gaccaggctg ccgaactggc cgagcgcgtt cggcaggccg
     1141 gcggcgatgc cggagaagat caggatcgag atgccgttgc cgaggccacg ctcggtgatc
     1201 tgctcgccga gccacatcag gaacatcgtc ccggcgacca ggctcacgac cgcggtcagg
     1261 cgaaagccga agcccgggac gatgaccagg cccggcgagc cttcgagagc cagggcgatg
     1321 ccgagcgact ggaagagcgc caggccgagc gtgccatagc gcgtgtattg ggtgatcttc
     1381 ctgcgccccg actcgccttc cttcttcagc gtctcgagcg tcggcacgac gtaggtcatc
     1441 agctgcatga tgatcgacgc cgagatgtac ggcatgattc ccagcgcgaa cacggtgaag
     1501 cgcgacagcg ctccgcccga gaacatgttg aagaggctga ggatgcctcc ctgctggccc
     1561 tggaacagcg actgcagggc gttcgggtcg attcccggca cgggaatgtg cgcgcccacc
     1621 cgatagacga cgagcgcgcc cagcaggaag aacaggcgtc ggcgcaggtc gccgaacttg
     1681 ccgctcttgg ccagttgatt cgcgttcgtt gccacggtct cttctcttcg ctctcgttca
     1741 ggcgaccgag ccgccggccg cttcgatcgc cgccttggcg ccggcggtcg cgaggatgcc
     1801 gccgctcagc gcgaccttga tcgtcagcgc gccactcttg atgaccttga cgttcttggt
     1861 catctcgccg atcagcttgg cctgcttcag ggtcagcatg tcgacctcgg cggcgcccag
     1921 gcgctcgagc tcgccgagcg tgatctcggc gttgtacttg gccgactgcg acttgaagcc
     1981 gcgcttgggc aggcgccgct gcagcggcat ctggccgcct tcgaagccga ccttgtgata
     2041 gccgcccgag cgcgatttct ggcccttgtg gccgcgcccg gcggtcttgc ccaggcccga
     2101 gccgatgccg cggccgacgc ggcggcgcgc cttcttggcg ccttcggctg gcttgatgct
     2161 gttcagttcc atgttcttgt cctcgcgtgc ctcagagcac cttcaccagg tacgagacct
     2221 tctcgatcat cccgcgcacg gatggcgtgt cctcgagcgt cgaaacgctc tgggtcttgc
     2281 gcaggccgag gccgcgcacc gtcgcacgat gcgactcgcg cgttccggcg acgctcttga
     2341 cgagcttgat cttgacggtc ttcttgtcgg cggacttgtc gttcatgttc gctctccctc
     2401 tcagccgacg atctcttcga ccgtcaggcc gcgcttggcc gcgatctcgg ccggcgtgct
     2461 gcagcgcttc aggccgtcga gcgtggctcg gacgatgttg taggggttcg acgagccgag
     2521 gctcttgcag acgatgtcgg tcacgcccat cacttcgaag acggcgcgca tcgggccgcc
     2581 ggcgatgatg ccgtcgccgg gcttggccgg cgccatcagg acgcgcgacg cgccgtgctc
     2641 gccgaccacc ttgtgatgaa tcgtgccgtt cttcagctgc accttgatca tgttccggcg
     2701 cgccgattcc atcgccttgg tcaccgagac cggcacttcc ttggccttgc ccttgcccat
     2761 gccgacgcgg ccgtcgccgt cgccgacgac ggtgagcgct gcgaagctga gcgtgcggcc
     2821 gcccttgacg accttggtga
//
LOCUS       DASVHM010000560         6766 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_979589, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000560 DASVHM010000000
VERSION     DASVHM010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6766
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_979589"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..970
                     /locus_tag="VF308_10495"
     CDS             <1..970
                     /locus_tag="VF308_10495"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015015634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEX7437130.1"
                     /translation="LISKTRTAIRRIMQRQDDRLLVIMGPCSIHDPVAAVEYARRLKT
                     QRERYADTLEIVMRVYFEKPRTTVGWKGLINDPYLDETYRIDEGLRIGRQLLLEINRL
                     GVPAGSEFLDVISPQYLGDLIAWGAIGARTTESQVHRELASGLSAPIGFKNGTDGNVK
                     IALDAILAARQKHHFLSVHKNGQVAIVETRGNTDCHVILRGGKTPNYDAAHVAAACRE
                     IEAAKLDCTLMVDCSHANSSKQHTRQLDVARDVAAQLKAGSRCIFGVMVESHLTAGAQ
                     KFKAGKDDPSKLAYGQSITDACLGWDDSLAVLETLDEGVTARRALA"
     gene            complement(986..1564)
                     /locus_tag="VF308_10500"
     CDS             complement(986..1564)
                     /locus_tag="VF308_10500"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEX7437131.1"
                     /translation="MAHRLTQIATRTGDDGTTGLGDGSRVPKDHLRIQALGDVDELNS
                     NLGVLLAEPLPDDVRELLVVIQHELFNLGGELSIPGFELLKADAVLRLDEALAHYNAA
                     LPRLKEFILPAGTRSAALAHVARTVARRAERAVVALAAVDAVRAEPRQYLNRLSDLLF
                     VLARVLNRANLDGLGGDDVYWHSERLARGEQG"
     gene            1696..3117
                     /locus_tag="VF308_10505"
     CDS             1696..3117
                     /locus_tag="VF308_10505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007856636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HEX7437132.1"
                     /translation="MNAPIPAHLLPRLEPRPMPAAMLDALKAHFGERCSTALAVREQH
                     GRDESPIDAPPPEAVVFCESTEDVAAVVKLADRYAVPVIPFGVGSSLEGHLLAVQGGV
                     SIDLNRMNRILALHPEDLTVTVQAGVTRNQLNDEIRHTGLFFPIDPGADASLGGMSAT
                     RASGTNAVRYGTMRDNVLGLTVVTAQGEVIHTGTRARKSSAGYDLTRLMVGSEGTLGV
                     MTEITVKLYPVPEAISAATCAFPSIDAAVRTTIQLIQLGVPIARCELLDRHAVRAVNR
                     HDKLALAEAPMLLMEFHGSPASVKEQATTVQEIATEFGGEHFQWATSPEERTKLWTAR
                     HHAYFAGLQMKPGCRTVTTDTCVPISRLAESVTKASEAAEAAGLMHYIVGHVGDGNFH
                     IAYLVDPRIPAERETAERLNEELVLRAIAMDGTCSGEHGIGLHKMDFLVTEAGAGAVD
                     LMRTLKRALDPKNIMNPGKIFAL"
     gene            complement(3136..4764)
                     /locus_tag="VF308_10510"
     CDS             complement(3136..4764)
                     /locus_tag="VF308_10510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HEX7437133.1"
                     /translation="MTRPETETAEVAKPTRWGLSGERVQPKPFALEQPLPPGPLPAAP
                     LPDPSDWSFELIEQYHEVIRAAAKRFGLDTYPNQLEVITAEQMMDAYASVGMPVNYRH
                     WSYGKEFIANEKNYRRGHMGLAYEIVINSDPCISYLMEENTTAMQALVIAHAAYGHNS
                     FFKNNYLFRLWTDASSIIDYLLYARNYIAECEERHGMQPVEDLLDSCHALQNYGVDRY
                     RRPGKISLAEEKARSTDRQAYAQLQINDIWRTLPKRPDRVEESGADGKRFPAEPQENI
                     LYFFEKNAPLLEPWQREIVRIVRKVAQYFYPQRQTQVMNEGWATFWHHHLLNTLYDEG
                     HLSDGVMIEWLKSHTNVIYQPPVGHRAYSGINPYALGFAMYTDIKRICDAPTDEDREW
                     FPDLAGTPWLPALHEAMRNFKDESFIGQYLSPKLIRDLRLFSILDEEASEHLSVSAIH
                     DTAGYRQVREALSHQYDLSAREPDIQVWNVNLRGDRSLTLRHTQHKGRPLNDTAEEVL
                     KHVARLWGFGVNLESVDSAGDVTMHWQVPAPAQA"
     gene            complement(4761..6041)
                     /locus_tag="VF308_10515"
     CDS             complement(4761..6041)
                     /locus_tag="VF308_10515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaH/YhbH family protein"
                     /protein_id="HEX7437134.1"
                     /translation="MLQQIIDRRLAGKNKSIGNRERFLRRHKQQLRDAVRRAIDGRGI
                     RDIEQGEDIHLPRRDISEPAFGHGQGGSREMVHPGNQEYLRGDRIERPKGGSGSGRGQ
                     GQAGDSGEGEDDFVFHLTKEEFMQIFFDDLALPRLTRTQLAETPEMKSHRAGYSNAGT
                     PSNLSVLRSMRGAIGRRLAIGAGSRIELAELEREFAALANAPADPAREFRRLELKERI
                     AVLKARLLRIPYLDPIDLRYRNRVRLPEPTSKAVMFCLMDVSGSMDEARKELAKRFFI
                     LLYLFLTRHYDKIDLVFIRHHTQAQEVDEENFFHARETGGTVVSSALVLMDEIISERY
                     PPGDWNIYGAQASDGDNWHHDSGRCRELLTETLLPKCRYFAYVQVAEEEQNLWEEYAR
                     LQETEPHFAMRKVGEASEIYPVFRDLFKARGVNA"
     gene            complement(6068..>6766)
                     /locus_tag="VF308_10520"
     CDS             complement(6068..>6766)
                     /locus_tag="VF308_10520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020165153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrkA family serine protein kinase"
                     /protein_id="HEX7437135.1"
                     /translation="DEGMSGVSTRFAFKILSKVFNFDPAEVAANPVHLMYVLEQQIER
                     EQFPAELEQKYLGFIKEHLSARYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADYWI
                     QDQEYRDTDTGEVFDRASLNAELEKIEKPAGISNPKDFRNEIVNFVLRARASNAGKNP
                     AWTSYEKLRTVIEKKMFSNTEELLPVISFNAKASADEAKKHENFVNRMVEKGYTAKQV
                     RLLCEWYLRVRKSS"
BASE COUNT         1111 a         2225 c         2236 g         1194 t
ORIGIN      
        1 cttgatcagc aagacccgca cggccatccg ccgcatcatg cagcgccagg acgatcgcct
       61 gctcgtcatc atgggcccat gctcgatcca cgacccggtc gcggcggtgg agtacgcacg
      121 gcgcctgaag acccagcgcg aacgctacgc cgacacgctc gagatcgtga tgcgcgtcta
      181 cttcgagaag ccccgcacga cggtcggctg gaagggcctc atcaacgatc cctacctcga
      241 cgagacctat cgcatcgacg agggcctgcg catcgggcgc caactgctgc tcgagatcaa
      301 ccgcctcggc gtgccggcgg ggagcgagtt tctcgacgtg atctcgcccc agtacctagg
      361 cgacctcatc gcctggggcg cgatcggcgc gcgcacgacc gagagccagg tgcatcgcga
      421 actcgcctcg gggctttccg cgccgatcgg gttcaagaac ggcaccgacg gcaacgtcaa
      481 gatcgcgctc gatgcgatcc tcgccgcgcg gcagaagcac catttcctct cggtgcacaa
      541 gaacggccag gtcgcgatcg tcgaaacccg cggcaacacc gattgccacg tcatcctgcg
      601 cggcggcaag acgcccaact acgacgcggc gcacgtggca gcggcgtgtc gcgaaatcga
      661 ggcggcgaag ctcgactgca cgctgatggt cgattgcagc cacgccaaca gcagcaagca
      721 gcacacgcgg cagctcgacg tggcgcgcga cgtcgccgcg cagttgaagg ccggaagccg
      781 ttgcattttc ggcgtgatgg tcgagagcca cctgaccgcc ggcgcgcaga agttcaaggc
      841 cggcaaggac gacccttcga agctcgccta cggacagagc atcaccgacg cctgcctcgg
      901 ctgggatgat tcgctggcgg tgctggaaac gctcgatgaa ggggtgaccg ctcggcgcgc
      961 gcttgcgtga caggtccgcg ccggttcagc cctgctcgcc acgtgccagc cgctcgctgt
     1021 gccaatacac gtcgtcgccg ccgagcccgt cgaggttcgc gcgattgaga acgcgggcga
     1081 gcacgaacag cagatcgctc aggcggttga gatactggcg tggctcggcg cgcaccgcgt
     1141 cgaccgccgc aagggccacg acggcgcgtt cggcgcggcg cgcgaccgtg cgcgcgacat
     1201 gggcaagcgc ggcgctgcgc gtgccggccg ggaggatgaa ttccttcagg cgcggcaatg
     1261 cagcgttgta gtgcgccagc gcctcgtcga ggcgcagcac ggcatcggcc ttcagcagct
     1321 cgaagccggg tatcgagagc tcgccaccca ggttgaacag ctcgtgctga atcacgacca
     1381 ggagctcgcg cacgtcgtcg ggcagcggct ccgcgagcag cacgcccagg ttcgagttga
     1441 gctcatcgac atcgcccagc gcctggattc gcaagtgatc cttgggcacg cgcgagccgt
     1501 cgccgagtcc ggtggtcccg tcgtcgccgg tgcgcgtcgc gatctgggtg aggcggtggg
     1561 ccatgtgtcg gatgctagca gcgacgcaag cgccgttcat gaccgcactg gacgtgtgcc
     1621 gccggttcga cagcgcgaac cggtgcttcc tacaatgcac cgcgcgccgc cctcgcgcac
     1681 cctgggagac ccgcgatgaa tgccccgatt cctgctcatc tgctgccgcg tctcgaaccg
     1741 aggcccatgc cggcggcgat gctcgacgcg ctgaaggcgc atttcggcga gcgctgctcg
     1801 accgcgctcg cggtgcgcga acagcacggg cgcgacgaat cgccgatcga cgcgccgcca
     1861 cccgaggcgg tcgtgttctg cgagagcacc gaggacgtcg ccgccgtcgt caagctggcc
     1921 gaccgctacg cggtgccggt gattcccttc ggcgtcggct cgtcgctcga ggggcatctg
     1981 ctcgccgtgc aaggcggcgt cagcatcgac ctgaaccgca tgaaccggat cctcgcgcta
     2041 catcccgaag acctcaccgt cacggtgcag gcgggcgtca cgcgcaacca gctgaacgac
     2101 gagatccgcc acacgggcct cttctttccg atcgacccgg gcgccgatgc gagcctcggc
     2161 ggcatgagtg cgacccgcgc gagcggtacc aacgccgtgc gctacggcac catgcgcgac
     2221 aacgtgctgg gcctcaccgt cgtgacggcg caaggcgagg tgatccacac cggcacgcgc
     2281 gcgcgcaaat cgtccgccgg ctacgacctc acccggctga tggtcggcag cgaaggcacg
     2341 ctcggcgtga tgaccgagat caccgtcaag ctgtacccgg tgcccgaagc gatctcggcg
     2401 gcgacttgcg cgttcccgag catcgacgcg gcggtgcgca cgacgatcca gctgatccag
     2461 ctcggcgtgc cgatcgcgcg ctgcgaattg ctcgatcggc acgcggtgcg cgcggtcaac
     2521 cggcacgaca agctcgcgct tgccgaggcg ccgatgctgc tgatggaatt ccacggcagc
     2581 ccggccagcg tgaaagaaca ggcgacgacg gttcaggaga tcgccaccga attcggcggt
     2641 gagcatttcc aatgggcgac gagtcccgaa gagcgcacga aactctggac cgcgcgacat
     2701 cacgcctact tcgccggctt gcagatgaaa ccgggctgcc gcaccgtgac gaccgacacc
     2761 tgcgtgccga tctcgcgcct ggccgagtcg gtgaccaagg cctccgaggc cgccgaagcc
     2821 gcgggcctca tgcactacat cgtcggccac gtcggcgacg gcaatttcca catcgcctat
     2881 ctcgtcgatc cgcgaattcc cgccgaacgc gagaccgccg agcggctcaa cgaggagctg
     2941 gtcctgcgcg cgatcgcgat ggacggcacc tgcagcggcg agcacggcat cggcctgcac
     3001 aagatggatt tcctcgtcac cgaagccggg gccggcgcgg tcgacctgat gcgcacgctc
     3061 aagcgcgcgc tcgacccgaa gaacatcatg aacccgggaa agatcttcgc gctctgaggc
     3121 gcgcagcgtc gaggctcagg cctgtgccgg ggcgggcacc tgccagtgca tcgtcacgtc
     3181 gccggcgctg tcgacgcttt ccaggttgac gccgaatccc cacagccggg cgacgtgctt
     3241 gagcacttcc tcggccgtgt cgttcaaggg gcggcccttg tgctgcgtgt ggcgcagcgt
     3301 cagcgatcgg tcgccgcgca ggttgacgtt ccagacctgg atgtcgggct cgcgcgcgct
     3361 caggtcgtac tggtgcgaca gcgcttcgcg cacctgccga tagccggccg tatcgtggat
     3421 cgcggaaacg ctcagatgct cgctcgcctc ctcgtccagg atcgagaaca gccgcaggtc
     3481 gcggatcagc ttgggtgaca ggtactggcc gatgaagctc tcgtccttga agttgcgcat
     3541 cgcctcgtgc agggcgggca accacggcgt gccggcgaga tccggaaacc actcgcggtc
     3601 ctcgtcggtc ggcgcgtcgc agatgcgctt gatgtcggtg tacatcgcaa agccgagcgc
     3661 ataagggttg atgccgctgt aggcccgatg gccgaccggc ggctggtaga tcacgttggt
     3721 gtgcgacttc agccattcga tcatcacgcc gtcgctgagg tgaccctcgt cgtacagggt
     3781 gttgagcaga tggtggtgcc aaaacgtggc ccagccctcg ttcatgacct gggtctggcg
     3841 ctgcggatag aagtattgcg ccaccttgcg cacgatgcgc acgatctcgc gctgccatgg
     3901 ctcgagcaag ggcgcgttct tttcgaagaa gtagaggatg ttttcctgcg gctcggccgg
     3961 gaatcgcttg ccgtcggcgc cgctctcttc gacccggtcg gggcgcttgg gcagggtgcg
     4021 ccagatgtcg ttgatctgga gctgcgcata ggcctggcgg tccgtgctgc gcgccttctc
     4081 ttcggccagc gagatcttgc cggggcggcg gtagcgatcg acgccgtagt tctgcagcgc
     4141 gtggcagctg tcgagcaggt cttcgaccgg ctgcatgccg tgccgctcct cgcattcggc
     4201 gatgtagttg cgcgcgtaga gaaggtagtc gatgatcgac gaggcatccg tccagagccg
     4261 aaacaggtag ttgttcttga agaagctgtt gtgcccgtac gccgcatggg cgatcaccag
     4321 cgcctgcatc gcggtggtgt tctcctccat caggtagctg atgcacgggt cggagttgat
     4381 gacgatctcg taggcaaggc ccatatgacc gcgccgatag ttcttctcgt tggcgatgaa
     4441 ctccttgccg tagctccagt ggcggtagtt gaccggcatg ccgacggagg cgtaggcgtc
     4501 catcatctgt tcggccgtga tgacctcgag ctggttcgga taggtgtcga gcccgaagcg
     4561 cttggccgcc gcgcggatca cttcgtggta ttgctcgatc agctcgaaac tccagtcgct
     4621 cggatcgggc aagggcgccg ctgggagcgg gcccggcggg agcggctgct ccagggcgaa
     4681 cggcttgggc tgcacgcgct cgccggagag tccccagcgg gtcggctttg cgacttcggc
     4741 agtctcggtc tcgggtcggg tcatgcgttc actccacgcg ccttgaacag gtcgcgaaat
     4801 accggataga tttcggaggc ctcgcccacc ttgcgcatcg cgaagtgcgg ctcggtctcc
     4861 tggagccggg cgtactcttc ccacaggttc tgctcttctt cggccacctg cacgtaggcg
     4921 aagtagcggc atttcggcag cagcgtctcg gtcagcaact cgcggcaacg cccgctgtcg
     4981 tgatgccagt tgtcgccgtc gctggcctgc gcgccgtaga tgttccagtc gccgggcgga
     5041 tagcgctcgc tgatgatctc gtccatcagc acgagcgcgc tcgaaaccac cgtgccaccg
     5101 gtctcgcgcg catggaaaaa gttctcctcg tcgacttcct gggcctgcgt gtgatggcgg
     5161 atgaaaacga ggtcgatctt gtcgtagtgg cgcgtcagga acaggtagag caggatgaag
     5221 aagcgcttgg cgagttcctt gcgcgcttcg tccatcgacc cggacacgtc catcaggcag
     5281 aacatcaccg ccttgctcgt cggctcgggc aggcggaccc gattgcgata gcgcaggtcg
     5341 atcgggtcga ggtagggaat cctcaagagg cgagccttga gcacggcgat ccgctccttg
     5401 agctcgaggc gccggaattc gcgcgccggg tccgcgggag cgttggccag cgcggcgaac
     5461 tcgcgctcga gttcggcgag ctcgatgcgc gaacccgcac cgatcgcgag gcgccgcccg
     5521 atcgcaccgc gcatggagcg cagcacgctg aggttgctgg gcgtgccggc gttggaatag
     5581 ccggcgcgat ggctcttcat ctcgggcgtc tcggcgagct gcgtgcgcgt caggcgcggc
     5641 aaggccaggt cgtcgaagaa gatctgcatg aactcttcct tcgtgaggtg gaagacgaag
     5701 tcgtcctcgc cctcgcccga gtcgcccgcc tgcccctggc cccggccgct gcccgagccg
     5761 cccttcggcc gctcgatgcg gtcgccgcgc agatactcct ggttgcccgg gtgcaccatc
     5821 tcgcgcgagc cgccctggcc atggccgaag gcgggctcgc tgatgtcgcg ccgcggcagg
     5881 tggatgtcct cgccctgctc gatgtcgcga atgccacgtc cgtcgatggc gcgtcgcacc
     5941 gcatcgcgca gttgctgctt atggcggcgc aggaaccgct cacgattgcc gatggacttg
     6001 ttcttgcccg ccaggcgccg atcgatgatc tgctgaagca tttgatttcc tgcgaaaggc
     6061 gactcgctca gctgctcttg cgaaccctca gataccactc gcacaataag cgcacctgtt
     6121 tggcggtgta gcccttctcg accatccggt tgacgaagtt ctcgtgcttt ttcgcctcgt
     6181 cggcactcgc cttggcgttg aagctgatca cgggcaacag ctcctcggtg ttcgagaaca
     6241 tcttcttctc gatcacggtg cgcagcttct cgtagctcgt ccacgccggg ttcttgccgg
     6301 cgttgctggc gcgcgcgcgc aggacgaagt tgacgatctc gttgcggaag tccttcggat
     6361 tcgagatgcc ggcgggcttt tcgatcttct cgagctcggc gttcaacgag gcgcggtcga
     6421 acacctcgcc ggtgtcggtg tcgcggtact cctggtcctg gatccagtag tcggcatagg
     6481 tgacatagcg atcgaagatg ttctgcccat actcgctgta gctctcgaga tacgcggtct
     6541 ggatctcctt gccgatgaat tccgcatagc gcgccgacag gtgctccttg atgaagccga
     6601 ggtacttctg ctcgagctcc gccggaaact gctcgcgttc gatctgctgc tcgagcacat
     6661 acatcaggtg caccgggttt gcggcgacct cggccgggtc gaagttgaag accttcgaca
     6721 ggatcttgaa ggcgaagcgc gtggacacgc cgctcatgcc ttcgtc
//
LOCUS       DASVHM010000561         5009 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1193464, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000561 DASVHM010000000
VERSION     DASVHM010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5009
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1193464"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..530
                     /locus_tag="VF308_10525"
     CDS             <1..530
                     /locus_tag="VF308_10525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha
                     C-terminal domain-containing protein"
                     /protein_id="HEX7437136.1"
                     /translation="RYGDEPTKSIGRIVLDASFSPVARVSYTVDSARVEQRTDLDKLV
                     MEINTNGAITPEEAIRSSAKILVEQLAVFAQLEGSDLAGIVDRETPRSTQFDPILLRP
                     VDELELTVRSANCLKAENIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASRGLTL
                     GARLENWPPQGLDKR"
     gene            668..1060
                     /gene="rplQ"
                     /locus_tag="VF308_10530"
     CDS             668..1060
                     /gene="rplQ"
                     /locus_tag="VF308_10530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEX7437137.1"
                     /translation="MRHGHGLRKLNRTSEHRLAMFRNMCNSLLQDEAIKTTVPKAKEL
                     RRLVEPLITLGKESTLANRRLAFDRTRDRAIVSKLFDELGPRYKARPGGYTRILKMGF
                     RAGDNAPMAFVELVDRPEPAAAEPKAEE"
     gene            1163..2083
                     /locus_tag="VF308_10535"
     CDS             1163..2083
                     /locus_tag="VF308_10535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010928225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7437138.1"
                     /translation="MPEPLLRITKLTKKFGANTVVDDLSFALQPGECLGVIGPNGAGK
                     TTMIRMCLGLTGCDSGSIEAFGLAIPAHVREAKKRIGVVTQFDSLDPDFTCAENLRVY
                     GRYFGLPRAMIEARIHPLLEFSALQAKADVKPGELSGGMKRRLSLGRALINDPDLLLL
                     DEPTTGLDPQARHLMWERLQNLLQQGKAILLTTHFMDEAERLCDRLIVLDQGRKIAEG
                     TPRGLIAEHLESDVVEVYGDGAAAAAAAHAALAQRVETSGETVFFYLRSPKPLLDALA
                     GNHDVRYLHRPANLEDLFLKLTGRQIRDQA"
     gene            2087..2872
                     /locus_tag="VF308_10540"
     CDS             2087..2872
                     /locus_tag="VF308_10540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437139.1"
                     /translation="MLTSFYTAPRITPRFWPVVMRNLLVWKKLAVPSVVGNIAEPLIT
                     LVAFGYGLGALVGQIEGRPYIEFLASGSVTVSAALAATFEALYSAYSRMAVQKTWDSI
                     LNAPVALDDIVFAEMLWAALKGLFSVAAILVVIFLLGISRAPSMLLALPVLGLVGITF
                     ASIALVFNSLAKGYDFFTYYFTLVMTPMTFLSGVYFPMTQMPPWLQAIGQVLPLTAAV
                     ELVRPLVLGQMPTEITRPLLILVAYAAAGYYLALVLTRRRFFR"
     gene            2920..4761
                     /gene="dsbD"
                     /locus_tag="VF308_10545"
     CDS             2920..4761
                     /gene="dsbD"
                     /locus_tag="VF308_10545"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047134 - protein-disulfide reductase
                     (NAD(P)) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HEX7437140.1"
                     /translation="MLPRNPLMPWLRLLVAVLLLAGAQAGRAADDFLEPEQAFKVSAR
                     ALDDKTVEVSFTVAPDYYLYREQFKFAATGATLGTPTLPHGKVKFDETFAKNVETYRG
                     VLRVVVPVEQARGEFRLIATSQGCADAGLCYPPMQSGFSVSLNGFGGDGSVRTLAASE
                     LPVPGMGGGSKQASAASIDAPRDASPLGTALREGRFWPIVGAFFLAGVLLSLTPCVLP
                     MLPIVSSIIAGHGEVVSRGRGLALAAAYSFGMALVYTALGVAAGLAGEGLAAALQTPW
                     VLGAFALGLVALALSMFGGYEMRLPSAFTTRMARASQRLPAGRIAGVCAMGGVSALIV
                     SPCVAAPLAGALVYLSQTRDVWLGGTALFSLAAGMSVPLLLVGASAGALLPRVGPWMN
                     EVKTFFGLLLLGVALWTVQTVLPAGLVLALWGALSIGGAVLLISPGRGHRAQPARRLW
                     RRVGAAVLGACGLLQLVGAASGGTDPLQPLGHLALGVRGGDKAPGMPRFTVVRSVDEL
                     DAALRSAGRPVMLDFYADWCVSCKEMERFTFTDPTVQAKLGGALLLKADVTQNNLQDR
                     ALLKRFGLFGPPGTIFFDPRGREVAAARVIGFQATDRFLETLRAAGL"
     gene            4805..4881
                     /locus_tag="VF308_10550"
     tRNA            4805..4881
                     /locus_tag="VF308_10550"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4839..4841,aa:Met,seq:cat)
BASE COUNT          750 a         1733 c         1663 g          863 t
ORIGIN      
        1 gtcgctacgg cgacgagccg accaagtcga tcggccggat cgtcctcgac gcctcgttct
       61 cgccggtcgc gcgcgtcagc tacaccgtcg acagcgcccg cgtcgagcag cgcaccgacc
      121 tcgacaagct ggtgatggag atcaacacca acggcgcgat cacgcctgag gaagcgatcc
      181 gctcgtcggc caagatcctg gtcgagcagc tggccgtgtt cgcgcagctc gagggcagcg
      241 acctggccgg aatcgtcgac cgcgaaaccc cgcgcagcac gcagttcgat ccgatcctgc
      301 tgcgcccggt cgacgagctc gaactgacgg tgcgttccgc gaactgcctg aaggccgaga
      361 acatctacta catcggcgac ctgatccagc gcaccgagac tgagctgctg aagaccccga
      421 acctgggccg caagtcgctc aacgagatca aggaagtgct ggcttcgcgc gggctcacgc
      481 tcggcgcgcg gctcgagaac tggccgcctc aagggttaga caagaggtaa agacggcggc
      541 aagcgccgtc atcggatgag accgcgcgtt gcgcggtcaa tcaataggct gccctcgggc
      601 ggcccggtgc acccgccagt acctgatacg gctggcggtt ttaaagagcg aaggaaagga
      661 aagcaccatg cgtcacggtc acggactcag gaaactcaac cgcacctcgg agcaccgcct
      721 ggcgatgttc cgcaacatgt gcaattcgct gctgcaagac gaagcgatca agaccacggt
      781 tccgaaggcc aaggaactgc gccgcctcgt cgagccgctg atcacactcg gcaaggagtc
      841 gacgctcgcc aatcggcgcc tggcgttcga ccgcacgcgc gaccgggcca tcgtcagcaa
      901 gctcttcgac gaactcgggc cgcgctacaa ggcgcgcccc ggcggctaca cccggatcct
      961 gaagatggga ttcagggccg gtgacaacgc gccgatggcg ttcgtcgaac tggtcgatcg
     1021 gcccgagccc gccgcggccg agcccaaggc cgaggagtaa gaccggcgcg cacgcgagcc
     1081 ggggtccatc gacaggggtc agcgcgagct gaccctttcg tcgtttggag gtttcgccgc
     1141 cccctttgtc gattcccacg ccatgcccga gccgctgctg cgcatcacga agctgacgaa
     1201 gaagttcggc gccaacacgg tcgtcgatga cctctcgttc gcgctccagc cgggcgaatg
     1261 cctcggcgtg atcggtccga acggtgccgg caagacgacc atgatccgca tgtgcctcgg
     1321 cctcaccggt tgcgactcgg gctcgatcga ggcgttcggg ctggccattc ccgcccatgt
     1381 gcgcgaggcc aagaagcgca tcggcgtggt gacccagttc gacagcctcg accccgattt
     1441 cacttgcgcc gagaacctgc gtgtctacgg ccgctacttc ggcctgccgc gcgcgatgat
     1501 cgaggcgcgc atccaccctc tgctcgagtt ctcggcgctg caggccaagg ccgatgtgaa
     1561 gccgggcgag ctgtcgggcg gcatgaagcg gcgcctcagc ctcggccgtg cgctcatcaa
     1621 cgaccccgac ctgctgctcc tcgacgagcc gacgacaggc cttgacccgc aggcgcgcca
     1681 cctgatgtgg gagcgcttgc agaacctgct gcagcaaggc aaggcgatcc tgctgacgac
     1741 ccatttcatg gacgaggccg agcgtctgtg cgaccgcctg atcgtcctcg accagggccg
     1801 caagatcgcc gagggcacgc cgcgcgggct gatcgccgag cacctcgaaa gcgacgtcgt
     1861 cgaggtctac ggcgacggcg ccgcggccgc cgccgccgcg cacgcggccc tcgcgcaacg
     1921 ggtcgaaacc agcggcgaga cggtgttctt ctacctgcgc agccccaagc cgctgctcga
     1981 tgcgctggcg ggaaaccacg acgtgcgcta cctgcaccgc ccggccaacc tggaagatct
     2041 ctttctcaag ctcaccggtc gccagatccg ggaccaggcc tgaaccatgc tgacctcgtt
     2101 ctacaccgcg ccccgcatca cgccgcgctt ctggccggtc gtgatgagga acctgctggt
     2161 ctggaagaag ctcgcggtgc cgagcgtcgt cggcaacatc gccgagccgt tgatcacgct
     2221 cgttgccttc ggctacgggc tcggcgcgct ggtcggccag atcgagggcc ggccgtacat
     2281 cgagttcctc gcctcgggca gcgtcaccgt gagcgcggcg ctggccgcga ctttcgaagc
     2341 gctctattcg gcctattcgc gcatggccgt gcagaagacc tgggacagca tcctcaacgc
     2401 gccggtcgcc ctcgacgaca tcgtcttcgc cgaaatgctc tgggccgcgc tgaaggggct
     2461 gttctcggtg gcggcgatcc tggtcgtgat cttcctgctc ggcatcagcc gggcgccctc
     2521 gatgctgttg gcgctgcccg tgctgggcct cgtcggcatc acgttcgcgt cgatcgcgct
     2581 ggtcttcaac tcgctcgcca agggctacga cttcttcacg tattacttca cgctcgtcat
     2641 gacgccgatg acgttcctct cgggcgtcta tttcccgatg acgcagatgc cgccctggct
     2701 ccaggcaatc gggcaggtgc tgccgctgac ggccgccgtg gaactggtgc gtcccctcgt
     2761 actcggtcaa atgccgacgg aaattacgcg cccgcttctc atcctcgttg cctatgccgc
     2821 agccgggtac tatctggccc tggtgctgac gcgccggcgc ttcttccggt aaggtgccgt
     2881 ctcagcgggc gacctagcct ggattcacgg aacatcgcca tgctccctcg caacccgctg
     2941 atgccctggc tgcgcctcct ggtcgcggtg ctgttgctgg cgggtgcgca agcagggcgg
     3001 gccgcggacg atttcctcga acccgagcag gcgttcaagg tctcggcgcg tgcgctcgac
     3061 gacaagacgg tcgaagtgag cttcaccgtc gcacccgact actacctcta ccgcgagcag
     3121 ttcaagttcg ccgcgaccgg cgcgactctg ggcacgccga ccctgccaca tggcaaggtg
     3181 aagttcgacg agaccttcgc caagaacgtc gagacctatc gcggcgtgct gcgtgtcgtc
     3241 gtgccggtcg agcaggcccg gggcgagttt cgtctcatcg cgacgagcca gggctgcgcg
     3301 gacgcggggc tttgctatcc gccgatgcaa agcggcttca gcgtgagcct gaacggcttc
     3361 ggcggcgacg gcagcgtgcg cacgctcgcc gcgagcgaac tgcccgtgcc gggcatgggt
     3421 ggcggctcga agcaggcttc ggccgcatcc atcgacgcgc cccgcgatgc gtcgccgctc
     3481 ggcaccgcgt tgcgcgaagg ccggttctgg ccgatcgtcg gcgcattctt cctggccggc
     3541 gtgctgttgt cgctcacccc gtgcgtgctg ccgatgctgc cgatcgtttc gtcgatcatc
     3601 gccggccacg gcgaagtcgt gtcgcgcggg cgcggcctcg cgttggcagc ggcgtattcg
     3661 ttcgggatgg cgctcgtcta taccgccctg ggcgtcgccg cggggctggc cggcgagggc
     3721 cttgccgcgg cgctgcaaac cccctgggtg ctcggcgctt ttgcgttggg cctggtggcg
     3781 ctggcgctgt cgatgttcgg cggctacgag atgcgcctgc cgtcggcgtt cacgacccgg
     3841 atggcgcgcg cgtcgcagcg cctgcctgcg ggccggatcg ccggcgtgtg cgcgatgggc
     3901 ggcgtctcgg cgctgatcgt gagcccctgt gtcgcggcac cgcttgccgg cgccttggtg
     3961 tatctgagcc agacccgcga cgtctggctc ggcggcaccg cgctcttttc gcttgccgcc
     4021 ggcatgagcg tgccgctgct cctcgtcggc gcgtcggccg gcgcactgct gccgcgggtc
     4081 gggccgtgga tgaacgaggt caagaccttc ttcggcttgc tcctgctcgg cgtggcgctg
     4141 tggacggtgc agacggtgtt gcccgccggt ctcgtgctgg cgctgtgggg tgcgctcagc
     4201 atcggcggcg cggtgctcct gatctcgccg ggccgcggcc accgcgccca gccggccagg
     4261 cgcctgtggc gccgtgtcgg cgcggccgtg ctcggggcct gcggactgct gcaactggtg
     4321 ggggcggcct cgggtgggac cgacccgctg cagcccctcg gccatctcgc cctcggggtg
     4381 cgcggcggcg acaaggcacc gggaatgccg cgcttcacgg tcgtgcgcag cgtcgacgaa
     4441 ctcgatgccg cgctgcgcag cgcgggccgt ccggtgatgc tcgatttcta tgccgactgg
     4501 tgcgtctcgt gcaaggagat ggagcgcttc acgttcaccg accccaccgt gcaagccaag
     4561 ctcggcggcg cgctgctgct caaggccgac gtgacgcaga acaacctcca agaccgcgcc
     4621 ctgctcaaac gcttcggcct gttcggaccg cccggcacga tcttcttcga cccgcgcggc
     4681 cgcgaggtcg ccgctgcccg cgtgatcggc tttcaggcca ccgatcgatt cctggaaacc
     4741 ttgcgggcgg cggggctgta gggagcttcg cgcgagccgg ttgtgttaaa ctgcaagcct
     4801 cagtcgcgag gtggagcagt ctggtagctc gttgggctca taacccaaag gtcgcaggtt
     4861 caaatcctgc cctcgcaacc acagaatacg aggccctccg agtgagggcc tcttcgcttt
     4921 ccggggtccg acgcgtcacc gtccggccat catgctgcgc aggtcgtttt cattcttgag
     4981 caggagcttg cgcgtctcct gacgcgctg
//
LOCUS       DASVHM010000562         4380 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1267210, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000562 DASVHM010000000
VERSION     DASVHM010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4380
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1267210"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..579)
                     /locus_tag="VF308_10555"
     CDS             complement(<1..579)
                     /locus_tag="VF308_10555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437141.1"
                     /translation="MLWIAGCMISAALLWLGPEIGAAARTRSTRLAWGLKACAVALAA
                     GGLWWPGHFAATAEPPSPNSATMAALAWLVAIGLAMLAGLTAGAATKKTFLAFSALAV
                     VTLLVTYGHSMVSTPGLFRAVQVVGPWAPGLVTVLLAAALVGLHVAILPERKARWLRA
                     GIALSVAAVLVAAAAATPATIHGAVNPAWPEAL"
     gene            complement(1024..1218)
                     /locus_tag="VF308_10560"
     CDS             complement(1024..1218)
                     /locus_tag="VF308_10560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437142.1"
                     /translation="MISRLTAFAACFAVLSAATITFAASATAHRDSPVHLSATAAQAM
                     PIVQMQRVEVIGRRAASAQR"
     gene            complement(1371..3185)
                     /locus_tag="VF308_10565"
     CDS             complement(1371..3185)
                     /locus_tag="VF308_10565"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEX7437143.1"
                     /translation="MDTRTSPFRLRIERVRDALHRHGLAAVLVPSSDPHLSEYLPERW
                     QGRQWLSGFTGSMGTLVVSLDEAVVFADSRYWVQAEAELAGSGIELVKIPTGTSTRHV
                     DWLAAHVKRGETVGVDGSVLGLAAAAGLRGALDAAGIGLRTDFDVLAEVWPERPGLPA
                     QPVYEHRAPEAPLPRAAKLAQVRSAMVEAGATHHFISTVDDIAWLLNLRGADVSYNPV
                     FLAHLLLTDRDATLFVGQSKVDPDLAALLEQDGIAIAPYADAGVALAALPADAVLLID
                     PKRITLGLREHATVGLVEAINPSTLLKSRKSAAEATHVREAMAQDGAAMCEFYAWFEA
                     TLADGLRREPITEITIDERLSAARARRPGFVGLSFNTIAGFNANGAMPHYRATPVSHA
                     VIEGSGLLLIDSGAQYRGGTTDITRVWPIGIVNAAQRRDYTLVLKGTLALSRARFPRG
                     TLAPMLDAIARAPLWEHGLDYGHGTGHGVGYFLNVHEGPQSISRVIADPSMAMEPGMI
                     TSIEPGLYRPGKWGVRIENLVLNVTAAAQPSTEFGEFLEFETLTLCPIDTRCIERALL
                     RQDEVEWLNGYHATVRARLSPLVSGDALAWLLLRTAPL"
     gene            complement(3240..>4380)
                     /locus_tag="VF308_10570"
     CDS             complement(3240..>4380)
                     /locus_tag="VF308_10570"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX7437144.1"
                     /translation="NLTILKGEVIAIDTAARRILLDDHDEPGSANSLGYDHLIVAAGS
                     THSYFGHADWPAHAPGLKTLADAFAIRARVIGAFEQAERCTAAEAREPWLTFAIIGGG
                     PTGVEMAGTLTEIARHTLRGEFRRIDPHRAHVVLIEGSKRVLGAFVPELSQRAADQLT
                     RLGVDLRTGCKVTGIDAGGVTYEAREGEALRTHRVASKTVIWAAGVAGSPLGRALADA
                     TGATLDRAGRVVVAPDLSLPGHPEIAVIGDLAAAMSHGKGAPKPVPGISPSAKQMGRT
                     AAGNLLRRLRGEPTRAFRYIDYGSLATVGRKAAIVDLSVPGLGAVRFAGLAAWLFWLF
                     AHIYFLIGFRNRLMVMVDWAWAYMTYERSARVVAEPPAPPHEVGS"
BASE COUNT          648 a         1473 c         1619 g          640 t
ORIGIN      
        1 gagcgcttcc ggccaggccg gattgacggc tccatggatc gttgccggag tggcggcagc
       61 ggctgccacc agcacagccg ctacggagag cgcgatgccc gcgcgcaacc agcgtgcctt
      121 gcgttcaggc aggatcgcga cgtgaagccc gaccagcgcg gcggccagca ggaccgtcac
      181 gagcccgggc gcccagggcc cgacgacctg gacggcgcgg aagagaccgg gggtcgacac
      241 catcgaatga ccataggtca cgagcaacgt gaccacggcg agtgcgctga atgcgaggaa
      301 cgtcttcttc gtcgccgcac cggcggtcag tcccgccagc atggcgaggc cgattgcgac
      361 cagccaggcg agtgccgcca tcgtggccga gttcggggag ggcggttcgg ccgtcgcggc
      421 gaagtgcccg ggccaccaca ggccgccggc cgcgagcgcg accgcgcagg ccttcaggcc
      481 ccaggccagg cgggtcgaac gggtgcgggc cgccgccccg atctcggggc cgagccagag
      541 cagtgccgca ctgatcatgc aacccgcgat ccagagcatg ggccggtcgt tcctgaagag
      601 gtccgagaaa tggcgtgccc ggtggcggcc tcggccaccc cggcgccgca tgcctttccg
      661 acgagaacgc cgacatgggt ccaatttcgg ctctcggccg aatagcttga gctctttccg
      721 ggtcgcgcgt gccgcccgaa tccgccaggc acgtcccgga cccatgccgg ggatcacatt
      781 cggtggctcc gccgtatgga gcattgcgcg tgccgacggg gcaggtttcc ccggcgcaag
      841 catgcccgaa gtctaggcgc gctgggtcgc gatgacgccg ccgggctcgc gttgcgcggt
      901 caggatgccg cggaaatgac gcatgacggc cgcttgcgcg gagctcgagg ctcccgcaag
      961 cgtttctggc gagtcggggg gctggatcgg aagggcaacc gtcgctgagc cgcagatgcc
     1021 gggtcagcgt tgcgccgagg cggcgcggcg gccgatgacc tcgacgcgtt gcatctgcac
     1081 gatcggcatc gcctgcgcgg cagtggcgct gaggtgaacc ggcgaatccc gatgggcggt
     1141 cgcgctggct gcgaaggtga tcgtcgcggc cgagagcact gcgaagcagg cggcaaaggc
     1201 ggtgaggcgg ctgatcatgg cggttccttt cgatgcgttg cgggccggtt gaggcgccgc
     1261 gttggaccga actgtaggag gccgcgaccg gtcgcgaaag cgccttgcga cgaagcgccg
     1321 cgaagggcgg atgaagtgcg cgtcgcggcg acgaatcgct gcgacaggtc ctagagcggg
     1381 gcggtgcgca ggagcagcca ggcgagtgcg tcgccgctca cgagcgggct gagtcgggcg
     1441 cgcaccgtcg cgtgataccc gttgagccac tcgacttcgt cctgacgcag cagcgcacgc
     1501 tcgatgcagc gcgtgtcgat cgggcacagg gtcagcgttt cgaactcgag gaactcgccg
     1561 aactcggtcg agggctgcgc ggccgccgtg acgttcagca ccaggttctc gatgcgcacg
     1621 ccccacttcc cgggccggta gagccccggc tcgatgctcg tgatcatgcc cggctccatc
     1681 gccatcgacg ggtcggcgat cacccgcgag atgctctgcg ggccttcgtg cacgttgagg
     1741 aaataaccga cgccgtgccc ggtgccgtgg ccgtagtcga gtccgtgctc ccagagcggc
     1801 gcgcgtgcga tcgcgtcgag catcggcgcc agggtgccgc gcggaaaccg ggcgcgactc
     1861 agtgccagcg tgcccttgag caccagcgtg tagtcgcgcc gttgcgccgc gttgacgatg
     1921 ccgatcggcc agacccgggt gatgtcggtc gtgccaccgc ggtactgggc tcccgaatcg
     1981 atcaacagca ggccgctgcc ctcgatgacc gcgtgcgaga ccggggtggc gcggtaatgc
     2041 ggcatcgccc cgttggcgtt gaagccggcg atcgtgttga agctcaggcc cacgaagccg
     2101 gggcgccgcg cacgcgccgc gctgagccgc tcgtcgatcg tgatctcggt gatcggttcg
     2161 cgtcgcaacc cgtcggcgag cgtggcttcg aaccaggcgt agaactcgca catcgcagcg
     2221 ccgtcctgcg ccatcgcctc gcgcacatgg gtcgcctcgg cggcgctctt gcggctcttc
     2281 agcagcgtgc tcggattgat cgcctcgacc aaccccaccg tcgcgtgctc gcgcaggccg
     2341 agggtgatgc gcttcgggtc gatcagcagg accgcatcgg caggcagggc ggcgagcgcc
     2401 acgcccgcgt ccgcatacgg cgcgatcgct atgccgtctt gttcgagtag cgctgccaga
     2461 tccgggtcga ccttgctctg gccgacaaag agggtcgcgt cgcggtccgt gagcagcagg
     2521 tgcgcgagga agacggggtt gtagctgacg tcggcgccgc gcaggttcag cagccaggcg
     2581 atgtcgtcga cggtcgagat gaagtggtgg gtcgctcccg cctccaccat cgccgaacgc
     2641 acctgcgcga gcttcgcggc cctgggcaac ggcgcttcgg gcgcacgatg ctcgtacacc
     2701 ggctgcgccg gcagtccggg gcgctcgggc cagacttcgg cgaggacgtc gaagtcggtg
     2761 cgcaggccga ttcccgcggc gtcgagcgcg ccgcgcaggc cggccgcggc ggcgaggccg
     2821 agcacgctgc cgtcgacgcc gaccgtctcg ccgcgcttca catgggccgc gagccagtcg
     2881 acatgccggg tcgaggtgcc ggtcggtatc ttcacgagct cgatgccgct gcccgcgagt
     2941 tcggcctcgg cctggaccca gtagcggctg tcggcgaaga ccaccgcttc gtcgaggctc
     3001 accaccaggg tgcccatcga gccggtgaag cccgacagcc actgccgtcc ctgccaacgc
     3061 tcgggcaggt actcggaaag gtgcgggtcg ctcgacggca cgaggacggc ggcgaggcca
     3121 tgccggtgca gcgcgtcgcg gacgcgctcg atgcgcaggc gaaaggggga ggtgcgggtg
     3181 tccatcggat cggctccggt tcgggctcat ggcgcggcac gccgcgtgca cgcccgattc
     3241 taggagccga cctcgtgtgg aggggcgggc ggttctgcga cgacccgcgc gctgcgctcg
     3301 taagtcatgt aggcccaggc ccagtcgacc atcaccatga gtcgattgcg aaacccgatc
     3361 aggaaataga tgtgcgcgaa gagccagaaa agccatgcgg ccaggccggc gaagcgcact
     3421 gcgccgaggc ccggcacgct gagatcgacg atggcggcct tgcggccgac cgtcgcgagg
     3481 ctgccgtagt cgatgtagcg gaacgcgcgg gtcggctcgc cgcgcagtct gcgcaggaga
     3541 ttgcccgccg cggtccggcc catctgcttg gcgctcgggc tgatgccggg caccggcttc
     3601 ggcgcgccct tgccgtggct cattgcggcc gccaggtcgc cgatcacggc gatctcggga
     3661 tgtcccggca ggctcaggtc gggcgcgacg acgacgcggc cggcgcggtc gagggtcgcg
     3721 ccggtggcgt ctgccaacgc gcggccgagg ggcgacccgg cgacgccggc ggcccagatc
     3781 accgtcttgc tggccacgcg atgcgtgcga agcgcttcgc cctcgcgcgc ttcgtaggtc
     3841 acgccgccgg catcgatgcc ggtcaccttg cagccggtgc gcaggtccac gccgaggcgc
     3901 gtcaactgat ccgcggcgcg ctgcgaaagc tccggcacga aggcgccgag gacgcgcttc
     3961 gagccttcga tcaggacgac gtgcgcgcgg tgcggatcga tgcgccggaa ctcgccgcgc
     4021 agcgtgtggc gggcgatctc ggtcagcgtg ccggccatct cgacgccggt cgggccgccg
     4081 ccgatgatcg cgaaggtcaa ccacggctcg cgcgcctcgg ccgcggtgca gcgctcggct
     4141 tgctcgaatg cgccgatgac gcgggcgcgg atcgcgaatg cgtcggccag ggtcttcaat
     4201 cccggagcgt gcgccggcca gtcggcgtgg ccgaagtagc tgtgcgtcga tccggccgcg
     4261 acgatcaagt ggtcgtagcc gagcgagttc gcgctgccgg gctcgtcgtg atcgtcgagg
     4321 aggatccggc gcgcagccgt gtcgatggcg atcacttcgc cttttaggat cgtcaggttg
//
LOCUS       DASVHM010000563         3547 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_255776, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000563 DASVHM010000000
VERSION     DASVHM010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3547
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255776"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..826)
                     /gene="sucC"
                     /locus_tag="VF308_10575"
     CDS             complement(<1..826)
                     /gene="sucC"
                     /locus_tag="VF308_10575"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEX7437145.1"
                     /translation="MKIHEYQGKELLRQFGVPVPRGYPAFSVREANEAAQKLGGSVWV
                     VKAQIHAGGRGKGGGVKVARSRDEVSKLAGKILGMQLKTHQTGPAGQKVRRLLIEEGA
                     DIKKEYYVAAVTDRATQTVAMMASSEGGMDIEQVAHDTPEKIIKVFIDPLAGMTDAQG
                     AELARGIGVPEASQAQAVDIFKKLYACYMATDASLAEINPLILEGNGAVKALDAKFNF
                     DANALFRHPELTAYRDLDEEDPAEIEASKFDLAYIQLDGNIGCLVNGAGLAMATMDT"
     gene            complement(832..1422)
                     /locus_tag="VF308_10580"
     CDS             complement(832..1422)
                     /locus_tag="VF308_10580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004635399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2889 domain-containing protein"
                     /protein_id="HEX7437146.1"
                     /translation="MALPTAAPERKLKHRRLIDVEIYSRGNGLWEVDARITDTRTEAV
                     QFPTGTRAAGEPIHDMLLRVVVDQTFTIVEAGAQTFSMPYPGACDAYGAAYSGLVGLN
                     LLKGFHRAVRERLGGVKGCTHITELAQVLPTAVVQAFAGDVLDTHGDAPSSEKPFQID
                     RCQALRSDGAAVLAYYPRWYRPAADPAPTHCEPERA"
     gene            complement(1575..2087)
                     /locus_tag="VF308_10585"
     CDS             complement(1575..2087)
                     /locus_tag="VF308_10585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011000511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RecX family transcriptional regulator"
                     /protein_id="HEX7437147.1"
                     /translation="MKRPRSLKSRALQLLAQREQSRIELRRKLLAHARAVVVDLSAPL
                     DPAGDPAPDAEAQVDAVLDWLEANRFLSAERFAESRVHVRAERFGNLRIRHELAQHEV
                     ALSPEAQQALVDTELARARAVRARKFPQPPAPPAENARQARFLGARGFSSDVIRRVLR
                     EATQADAAGG"
     gene            complement(2107..3192)
                     /gene="recA"
                     /locus_tag="VF308_10590"
     CDS             complement(2107..3192)
                     /gene="recA"
                     /locus_tag="VF308_10590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEX7437148.1"
                     /translation="MDATAKLATPTFNTEKAKALQAALAQIEKQFGKGTIMRLGEGEV
                     IEDIEVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQRVGGTCA
                     FIDAEHALDIGYAQKLGVNLQELLISQPDTGEQALEIVDALVRSASVDLVVIDSVAAL
                     TPKAEIEGEMGDSLPGLQARLMSQALRKLTSSIKKTNTMVIFINQIRMKIGVMFGSPE
                     TTTGGNALKFYASVRLDIRRIGSIKKGEEVIGNETKVKVVKNKVSPPFKTAEFDILYG
                     QGISREGEIIDMGVEAKILEKSGSWYAYNGEKIGQGKDNAREFLKENPDLSFEIENKV
                     REAVGIRVLPGPTGEEAKPAKLKVVKE"
     gene            3372..>3547
                     /locus_tag="VF308_10595"
     CDS             3372..>3547
                     /locus_tag="VF308_10595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7437149.1"
                     /translation="MRILIAEDDQVLADGLLRSLRNAGYAVDQVGSGTEADAALASHE
                     FDLLILDLGLPKMHG"
BASE COUNT          522 a         1156 c         1215 g          654 t
ORIGIN      
        1 tcgtgtccat ggtcgccatc gccaggcccg cgccgttgac gaggcagccg atgttgccgt
       61 cgagctggat gtaggcgaga tcgaacttgc tggcttcgat ttcggccggg tcttcctcgt
      121 cgaggtcgcg gtaggccgtg agctcgggat ggcggaaaag cgcgttggcg tcgaaattga
      181 acttcgcgtc gagcgccttg acggcgccat tgccctccag gatcagcggg ttgatctcgg
      241 cgagcgaggc gtcggtcgcc atgtagcagg cgtagagctt cttgaagatg tcgacggcct
      301 gcgcctgcga cgcttcgggc acgccgatgc cccgggcgag ctcggcgccc tgcgcatcgg
      361 tcatgccggc gagcgggtcg atgaagacct tgatgatctt ctcgggcgtg tcgtgggcga
      421 cctgctcgat gtccatgccg ccttcgctcg aggccatcat cgccaccgtc tgcgtcgccc
      481 gatcagtgac cgccgcgacg taatactctt tcttgatgtc ggcaccctcc tcgatcagga
      541 gacgccgcac cttctgcccg gcggggccgg tctgatgcgt cttcagctgc atgccgagga
      601 tcttgccggc gagcttgctg acctcatccc gcgaacgcgc gaccttgacg ccgccgccct
      661 tgccgcgccc gcccgcgtgg atctgcgcct tcaccaccca gaccgagccg ccgagctttt
      721 gcgcggcctc gttcgcctcg cgcacgctga aggccgggta gccgcgcggc accggcacgc
      781 cgaactggcg caggagttcc ttgccctggt attcgtgaat cttcatggcg tttacgctcg
      841 ctcgggttcg caatgggttg gagctggatc cgccgcgggc cggtaccagc gcgggtagta
      901 agccagcacg gccgcgccgt cggaacgcag cgcctggcag cggtctatct ggaacggctt
      961 ctcgctcgac ggcgcgtcgc cgtgcgtgtc gagcacgtca ccggcgaagg cctgcacgac
     1021 cgcggtcggc agcacctggg cgagttcggt gatatgggtg cagcccttta cgccgccgag
     1081 gcgctcgcgc accgcccggt ggaaaccctt cagcaggttc agcccgacca ggccggagta
     1141 ggccgcaccg taggcgtcgc aggccccggg gtaaggcatc gagaaggtct gcgcgccggc
     1201 ttcgacgatg gtgaaagttt ggtcgaccac gacccgcaac agcatgtcgt ggatcggctc
     1261 gccggccgcg cgcgtgccgg tcgggaactg gacagcctcg gtccgggtgt cggtgatgcg
     1321 cgcgtcgact tcccaaaggc cgttgccgcg ggaatagatt tcgacgtcga tgaggcgtcg
     1381 gtgcttgagc ttgcgctcgg gcgcggcggt cggcagggcc atggcggaag tcgcggtcga
     1441 gagcgcgttg agtgaggtcg atcggcggca gactgtgccc gcaagcgagg cgatcgcggc
     1501 cggcaaaatc gcgacaggcg ccgaatgtag cacgctgttt tccggcgtcg cggcgcacgg
     1561 gtcgcgccac gctttcagcc gccggccgcg tccgcctggg tggcctcgcg caggacgcgc
     1621 cgaatcacat cggacgaaaa gccgcgggcg cccagaaacc gcgcctggcg tgcattttcg
     1681 gccggcggcg cggggggctg cggaaacttg cgggcgcgaa ccgcgcgcgc ccgcgcaagt
     1741 tcggtgtcga cgagtgcctg ctgcgcctcg ggcgaaagcg ccacctcgtg ctgggccagt
     1801 tcgtggcgga tgcgcaggtt gccgaagcgc tccgcgcgca cgtggacacg cgactcggca
     1861 aagcgctcgg ccgagagaaa gcggttcgct tcgagccagt cgagcacggc atcgacctgc
     1921 gcctcggcat cgggcgcggg atcgccggcc ggatcgaggg gcgccgaaag gtcgaccacg
     1981 acggcccgcg catgcgccag cagcttgcga cgcagttcga tacggctttg ttcgcgctgc
     2041 gccagcagtt gcagcgcacg cgacttgagc gagcgcggcc gcttcacgct cgcgccgccg
     2101 ccccggctat tccttgacga ccttgagctt ggcgggcttg gcctcttccc cggtcgggcc
     2161 cggaagcacg cggatgccga ccgcttcgcg caccttgttc tcgatctcga aagacaggtc
     2221 ggggttttcc ttgaggaatt cgcgcgcgtt gtccttgccc tggccgatct tctcgccgtt
     2281 gtaggcgtac caggagccgc tcttctcgag gatcttggcc tcgacgccca tgtcgatgat
     2341 ctcgccttct cggctgatgc cctggccgta gaggatgtcg aactccgccg tcttgaaggg
     2401 tggcgagacc ttgttcttga cgaccttgac cttggtctcg ttgccgatga cttcttcgcc
     2461 cttcttgatc gagccgatgc ggcggatgtc gaggcggacc gaggcgtaga acttcagcgc
     2521 attgccgccg gtggtggttt ccggggagcc gaacatcacg ccgatcttca tgcggatctg
     2581 gttgatgaag atcaccatcg tgttggtctt cttgatgctg ctggtgagct tgcgcaaggc
     2641 ctggctcatg aggcgcgcct gcaggccggg cagcgaatcg cccatttcgc cctcgatctc
     2701 ggccttgggc gtgagcgcgg ccaccgagtc gatgacgacc aggtcgaccg atgccgagcg
     2761 gaccagcgca tcgacgatct cgagcgcctg ctcgccggta tcgggctggg agatcaggag
     2821 ctcctgcagg ttgacgccga gtttctgggc atagccgatg tcgagcgcgt gctcggcatc
     2881 gatgaacgcg caggtgccgc cgacgcgctg catctcggcg atgacctgca gcgtcagcgt
     2941 ggtcttgccc gacgactcgg gcccgtagat ctcgaccacg cggccgcgcg gcaggccgcc
     3001 gacaccgagc gcgatgtcga ggccaagcga gccggtggag acgacttcga tgtcctcgat
     3061 gacttcgcct tcgcccaggc gcatgatcgt gcccttgccg aactgctttt cgatctgcgc
     3121 cagtgcggct tgcagcgcct tggctttctc ggtgttgaag gtcggggtgg cgagctttgc
     3181 ggtggcgtcc atggcgttct ccggagttgg cgcattatcc caaaagctgg atgtttgtac
     3241 agtagcgccg aagcttcttt gcgcctgatc cgtacaatat ttccgagccg tcaatctagg
     3301 ccggcacaga ccggccgggc accccatcac gggccactcc gtcaggggag caggcgtgca
     3361 ggagacatcg catgcggatt ctgatcgccg aagacgacca ggtgctggcc gacgggctgc
     3421 tccggtcgct gcgcaatgcc ggctacgccg tggaccaggt cggcagcggc accgaagccg
     3481 acgccgcgct cgcctcgcac gagttcgacc tcctgatcct cgatctcggc ctgccgaaga
     3541 tgcacgg
//
LOCUS       DASVHM010000564         1941 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_183519, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000564 DASVHM010000000
VERSION     DASVHM010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183519"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..247
                     /locus_tag="VF308_10600"
     CDS             <1..247
                     /locus_tag="VF308_10600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019572591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX7437150.1"
                     /translation="ARGLTPTEFALGWVWNNRLVHGVIAGPKTLRQWQAYLDAMNRPF
                     NAEDEAFVDGLVSAGHASTPHYTDPQYPVTGRVPITG"
     gene            339..1541
                     /locus_tag="VF308_10605"
     CDS             339..1541
                     /locus_tag="VF308_10605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEX7437151.1"
                     /translation="MEQARSGGDALFILLGAVMVLAMHGGFAFLELGTVRAKNQVNAL
                     VKILVDFAVSTIAYFFVGYAVAYGIGFFTGAEALSARNGYELVKFFFLLTFAAAIPAI
                     VSGGIAERSRFGPQLVATAVLVGLIYPVFEGVAWNQNLGIQAWIRRLAGAEFHDFAGS
                     VVVHAVGGWIGLAAVLLLGARSNRYRKDGAISAHPPSSIPFLALGAWMLTVGWFGFNV
                     MSAQTLDKISGLVAVNSLMAMAGGTLVAALIGRNDPGFVYNGPLAGLVAVCAGSDVMH
                     PVGALVAGGVAGAIFVSMFTLTQNRWKIDDVLGVWHLHGLCGAWGGIAAGIFGSATFG
                     GRGGVSLLAQVIGTSLGVAWAFAGGLVVYGLLRATMGLRLSQEDEFVGADLAIHKIGA
                     TPDHEVSW"
     gene            1549..>1941
                     /locus_tag="VF308_10610"
     CDS             1549..>1941
                     /locus_tag="VF308_10610"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7437152.1"
                     /translation="MPTPSTRYAQSAGVHIAWQALGGGERDLLFVQGWVSNIEANWQF
                     AEIDSFLRRLAAFGRLIVFDKRGTGLSDRVARMPSMEERMDDVRAVLEAAQARAAVVI
                     GVSEGCALAASFAATYPDRAAALLLSGGY"
BASE COUNT          270 a          645 c          675 g          351 t
ORIGIN      
        1 ggcccgcggt ctcacgccca ccgagttcgc gctcggctgg gtctggaaca accggctcgt
       61 gcacggtgtc atcgccgggc cgaagacgct gcgacagtgg caagcctatc tggacgcgat
      121 gaaccggccg ttcaacgccg aggacgaagc gttcgtcgat ggcctcgtga gcgcggggca
      181 cgcgtcgacg ccgcactaca cggacccgca atacccggtg acgggccggg tgccgatcac
      241 cggctgagca gagaatgcgg cggccggcgc gagccggcga ccgtgcgagc cgcgcgtcgc
      301 cggttcgcga acaagaacac aaacatttgg gggagaccat ggaacaagcc agaagcggcg
      361 gcgacgcgct gttcatcctg ttgggcgcgg tcatggtgct cgcgatgcac ggcggcttcg
      421 cgtttctcga gctcggaacc gtccgcgcga agaaccaggt caatgcactg gtcaagatcc
      481 tcgtcgactt cgcggtctcg accatcgcct atttcttcgt cggctacgcg gtcgcttacg
      541 gtatcggctt tttcactggc gccgaagcct tgtcggcccg caacggctat gaactcgtca
      601 aattcttctt cctgctgacc ttcgccgcgg ccatcccggc gatcgtctcc ggcggcatcg
      661 ccgagcgttc ccgcttcggc ccgcaactcg tcgcgaccgc ggtgctggtc gggctgatct
      721 atccggtgtt cgaaggcgtc gcctggaacc agaatctggg catccaggca tggatccggc
      781 gtctcgccgg ggcggagttc catgacttcg ccggcagcgt ggtcgtgcac gcggtcggcg
      841 gatggatcgg cctggcggcg gtgctgctgc tcggcgcgcg cagcaaccgg tatcgcaagg
      901 acggcgcgat cagcgcgcat ccgccatcga gcattccttt cctcgcgctc ggcgcgtgga
      961 tgctcaccgt cggctggttc ggcttcaatg tgatgagcgc gcagacactc gacaagatct
     1021 ccggtctcgt cgccgtcaat tcgctgatgg cgatggcggg cggcacgctc gtcgccgcgt
     1081 tgatcggcag gaacgatccc ggcttcgtct acaacggtcc gctcgccggg ttggtggcgg
     1141 tgtgcgcggg ctccgacgtg atgcatccgg tcggcgcgct cgtcgccggc ggggttgccg
     1201 gcgcgatctt cgtttcgatg ttcacgctga cgcaaaaccg ctggaagatc gacgacgtcc
     1261 tcggcgtctg gcacttgcac ggcctgtgcg gcgcgtgggg cggcatcgcg gcgggcatct
     1321 tcggcagtgc gaccttcggc gggcgcggcg gggtgagctt gctcgcccag gtcatcggca
     1381 cctcgctcgg ggtggcttgg gccttcgcgg gcggtcttgt ggtctatgga ctgctgcgcg
     1441 cgacgatggg cctgcgtctt tcgcaggagg acgagttcgt cggcgccgac ctcgcgatcc
     1501 acaagatcgg tgcgactccg gatcacgaag tcagctggta ggcccgcgat gcccacgccc
     1561 tcgacgcgct acgcacagag cgccggcgtg cacatcgcct ggcaggcgct cggcggcggc
     1621 gagcgcgacc tgcttttcgt ccagggctgg gtctcgaaca tcgaggcgaa ctggcagttt
     1681 gccgagatcg attccttcct gcgccggctc gccgcgttcg gccgcctgat cgtgttcgac
     1741 aagcgcggca cgggtctctc ggaccgggtc gcgcgcatgc cgagcatgga agaacgcatg
     1801 gacgacgtgc gcgcggtgct cgaggccgca caggcgcgcg cggcggtcgt gatcggcgtt
     1861 tccgaaggct gcgcgctcgc ggcgtcgttc gccgcgacct atcccgatcg cgccgccgcc
     1921 ctcctgctct ccggcggcta c
//
LOCUS       DASVHM010000565         3318 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_762998, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000565 DASVHM010000000
VERSION     DASVHM010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3318
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_762998"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..253)
                     /locus_tag="VF308_10615"
     CDS             complement(<1..253)
                     /locus_tag="VF308_10615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019427021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HEX7437153.1"
                     /translation="MDDAAALGPGVAAAREIDARADSERPIGDRALSKLRWRCRRGLL
                     ENDLLLERFFARSTPLTEGDAEGLRLLMELGDNDLLDIFL"
     gene            complement(253..1026)
                     /locus_tag="VF308_10620"
     CDS             complement(253..1026)
                     /locus_tag="VF308_10620"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019427020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008177 - succinate dehydrogenase
                     (ubiquinone) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HEX7437154.1"
                     /translation="MDKEPTPSVVAALDSLGVPRPSKASLRTFRIYRYDPDNGAVPTM
                     QTMQVELDGSERMLLDALMKLKATDPSLSFRRSCREGVCGSDAMNINGKNGLACLTNM
                     RTLKDPIVLKPLPGLPVIRDLIVDMTQFFKQYHSIKPYLVNDERPPEKERLQSPEERE
                     ELNGLYECILCASCSTACPSFWWNPDKFVGPAGLLQAYRFIADSRDEATNERLDNLED
                     PYRLFRCHTIMNCVDVCPKSLNPTRAIGKIKELMVRRAV"
     gene            complement(1029..2846)
                     /gene="sdhA"
                     /locus_tag="VF308_10625"
     CDS             complement(1029..2846)
                     /gene="sdhA"
                     /locus_tag="VF308_10625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HEX7437155.1"
                     /translation="MDGPAIHTSSVPTRRFDVVIVGAGGSGMQAALRLSLAGLNVAVL
                     TKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTVKGSDWLGDQDAIEFMCREAPN
                     VVYELEHFGMPFDRNPDGTIYQRPFGGHTANYGEKPVQRACAAADRTGHAMLHTLYQQ
                     NVKARTNFFVEWMALDLIRDAEGAVVGVTALEMETGQLHVLQAKAVMLATGGAGRIFA
                     ASTNAFINTGDGLGMAARAGLPLQDMEFWQFHPTGVYGAGVLLTEGCRGEGAILRNSD
                     GERFMERYAPTLKDLAPRDFVSRCMDQEIKEGRGCGPEKDYIVLDMTHLGADTIMKRL
                     PSIYEIGHNFANVDITREPIPVVPTLHYQMGGVPTNVHGQVVVPKNGDPNTVVPGLYA
                     VGECSCVSVHGANRLGTNSLLDLLVFGRAAGNHLVESHLAAQAHRPLPAHASDATAAR
                     LARLDASTGGEYSQAIANDLRKTMQVHAGVFRTQASMDEGVGKVQAIAERAWSMHLAD
                     KSKIFNTARVEALEVDNLMEAALATMVSAAARHECRGAHTVVEYERPIDDPVAPNGRN
                     DAEWMKHTLWFSEGNRLDYKPVNLTPQTVESIPPKVRTF"
     gene            complement(2846..3208)
                     /gene="sdhD"
                     /locus_tag="VF308_10630"
     CDS             complement(2846..3208)
                     /gene="sdhD"
                     /locus_tag="VF308_10630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HEX7437156.1"
                     /translation="MSISFGSRRLVVGAHYGLRDWLAQRATSIVMALFTVAVIVQVLL
                     PGPLDYYRWSAIFSRQWMKVLTFVVVLSLLYHAWVGMRDIWMDYIKPVSVRLTLDVVT
                     IAWLVGCAGWAIQVLWRL"
BASE COUNT          528 a         1068 c         1170 g          552 t
ORIGIN      
        1 cgagaaagat gtcgagcaga tcgttgtcgc cgagctccat caggaggcgc aggccttcgg
       61 cgtcgccttc ggtcagcggc gtcgaccgcg cgaagaaccg ctcgagcagg agatcgttct
      121 cgagcaggcc gcgccggcag cgccagcgca gcttgctcaa cgcgcgatcg ccgatcgggc
      181 gttcggagtc ggcgcgcgcg tcgatttcgc gcgccgcagc cacgccagga ccgagcgcag
      241 cggcgtcgtc catcagacgg cccgcctcac catcagctcc ttaatcttgc cgatcgcgcg
      301 cgtcgggttc aggctcttcg ggcagacgtc gacgcagttc atgatggtgt ggcagcgaaa
      361 caagcggtac ggatcctcga ggttgtcgag gcgctcgttg gtcgcctcgt cgcgactgtc
      421 ggcgatgaaa cgatacgcct gcagcaggcc cgccggcccg acgaacttgt cggggttcca
      481 ccagaagctc gggcatgccg tcgagcagct cgcgcagagg atgcactcgt agaggccgtt
      541 cagctcctcg cgctcctcgg gcgactgcag ccgctccttc tcgggcggac gctcgtcgtt
      601 gacgagatag ggcttgatcg agtggtactg cttgaagaac tgcgtcatgt cgacgatcag
      661 gtcgcggatg acgggcagcc ccggcagcgg cttcaggacg atcgggtcct tcagcgtcct
      721 catgttggtg aggcacgcga ggccgttctt gccgttgatg ttcatcgcgt cggagccgca
      781 gacgccttcg cggcacgagc ggcggaagct caggctcggg tccgtcgcct tcagcttcat
      841 cagcgcgtcg agcagcatgc gctcgctgcc gtcgagctcg acctgcatcg tctgcatcgt
      901 cggcacggcg ccgttgtcgg ggtcgtagcg gtagatgcga aacgtgcgca agctcgcctt
      961 cgacggacgc ggcacgccga gcgagtccag agcggcaacg acggagggtg tcggttcctt
     1021 gtccatggtc agaaggtgcg caccttgggc ggtatcgatt cgacggtttg cggggtcagg
     1081 ttcacgggct tgtagtcgag gcggttgcct tcgctgaacc agagcgtgtg cttcatccac
     1141 tcggcgtcgt tgcgcccgtt cggcgcgacc ggatcgtcga tcggccgctc gtactcgacg
     1201 accgtgtgcg cgccgcggca ctcgtgccgg gccgccgccg agaccatcgt cgccagcgcc
     1261 gcctccatca ggttgtcgac ctcgagcgcc tcgacgcggg cggtgttgaa gatcttcgac
     1321 ttgtcggcga ggtgcatcga ccaggcgcgc tctgcgatcg cctggacctt gccgacgcct
     1381 tcgtccatcg acgcctgggt gcgaaagacg ccggcgtgca cctgcatcgt cttcctcagg
     1441 tcgttggcga tcgcctgcga gtactcgccg ccggtgctcg cgtcgagccg cgccagccgc
     1501 gccgccgtgg cgtccgacgc gtgcgcgggc aacggccgat gcgcttgcgc ggccagatgg
     1561 ctctcgacga gatggttgcc ggcggcacgg ccgaagacga ggagatcgag cagcgagttc
     1621 gttcccaggc ggttggcgcc gtgaacgctt acgcaagagc attcgccgac ggcgtagagg
     1681 ccaggaacga cggtgttcgg gtcgccgttc ttcggcacaa cgacctggcc gtgcacattg
     1741 gtcggcacgc cgcccatctg atagtggagc gtcggcacga cggggatcgg ctcgcgcgtg
     1801 atgtcgacgt tggcgaagtt gtggccgatc tcgtagatgc tcggcaggcg cttcatgatc
     1861 gtgtcggcgc cgaggtgcgt catgtcgagg acgatgtagt ccttctccgg gccgcaaccg
     1921 cgcccttcct tgatctcctg gtccatgcag cgcgagacga agtcgcgcgg cgcgaggtcc
     1981 ttcagcgtcg gcgcgtagcg ctccatgaag cgctcgccgt cgctgttgcg cagaatcgcc
     2041 ccttcgccgc ggcagccttc ggtgaggagc acgccggcgc cgtagacgcc ggtcgggtgg
     2101 aactgccaga actccatgtc ctggagcggc aggccggcgc gcgccgccat gccgaggccg
     2161 tcgccggtgt tgatgaaggc gttggtcgac gccgcgaaga tgcggccggc gccgccggtc
     2221 gcgagcatca ccgccttggc ctgcaggacg tgcagctggc ccgtctccat ctcgagcgcg
     2281 gtgacgccga cgacggcgcc ctcggcgtcg cggatcaggt cgagggccat ccactcgacg
     2341 aagaaattgg tgcgcgcctt gacgttctgc tggtagagcg tgtgcagcat cgcgtggccg
     2401 gtgcggtcgg cggcggcgca ggcgcgctgc acgggcttct cgccgtagtt cgcggtgtgg
     2461 ccgccgaacg ggcgctggta gatcgtgccg tcggggttgc ggtcgaacgg catgccgaaa
     2521 tgctcgagct cgtagacgac gttcggcgcc tcgcggcaca tgaactcgat cgcgtcctgg
     2581 tcgccgagcc agtcggagcc cttgacggtg tcgtagaagt ggtagtgcca gttgtcctcg
     2641 ctcatgttgc cgagcgaggc gccgatgccg ccctgcgcgg cgacggtgtg cgagcgcgtc
     2701 gggaacacct tcgtcagcac cgcgacgttg aggccggcga gcgacaagcg caatgcagcc
     2761 tgcatccccg agccgccggc accgacgatg acgacgtcga agcggcgcgt cggcaccgag
     2821 gacgtgtgga tcgcgggccc gtccatcaca gcctccagag aacctggatc gcccagccgg
     2881 cgcagccgac cagccaggcg atggtcacca cgtcgagcgt caggcgcacc gacacgggct
     2941 tgatgtagtc catccagata tcgcgcatgc cgacccacgc gtgatagagc agcgagagca
     3001 cgacgacgaa ggtgagcacc ttcatccact ggcgcgagaa gatcgccgac cagcggtagt
     3061 agtcgagcgg cccgggcagc agcacctgga cgatcaccgc gacggtgaag agtgccatca
     3121 cgatcgaggt ggcgcgctgc gccagccagt cgcgcaggcc gtaatgagcg ccgacgacga
     3181 ggcggcggga accgaaggag atgctcatgg ggcgttcaga agaaaagctt cgcgccgagc
     3241 gcgagcgcga cgacggtgct gaagacgatg acgaccagcg ccgaagtgcg accgaacgag
     3301 taggtgacgg catgcgtc
//
LOCUS       DASVHM010000566         3421 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_183824, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000566 DASVHM010000000
VERSION     DASVHM010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3421
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183824"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2321)
                     /locus_tag="VF308_10635"
     CDS             complement(<1..2321)
                     /locus_tag="VF308_10635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015865854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indolepyruvate ferredoxin oxidoreductase family
                     protein"
                     /protein_id="HEX7437157.1"
                     /translation="MPPTSLRSDYRLADNLEATSGQVFLTGTQALIRLALMRGIRDAE
                     RGIRSQGFISGYRGSPLGMVDLAAWKAKALLDARGVRFLPAINEELGATAVLGTQRVE
                     SDPERTADGVYAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSSSMP
                     HQSDLAFQAWHMPTVAPANVAEYLEFGLYGWDLSRFSGNWVGLTALSEVVESGSTVDL
                     DETARRVGAWKSAAEVEASGAYVRPADGLHHRWPDLPSLQIEERLLQKLEAVRAFAKV
                     NSIDRDVVRSAHATVGIVTCGKAHFDLLEVFRRLDISLEALAEAGVRLYKVGLSFPVE
                     PTRLQAFAEGLGEILVIEEKAGLVEAQLRGLFYNAAPRPVIIGKHDAAGRPLVAVLGE
                     LRPSRLIEIVAAWLARHFAQLDRRELVVDFTVPKLLSNESDSVKRLPYFCAGCPHSTS
                     TRVPQGSLAQPGIGCHFMATWMNRDTAGLIQMGGEGVDWVSHAQFTKVPHVFQNLGDG
                     TYYHSGYLAVRQAIAAKANITYKILYNDAVAMTGGQPVDGIISVDRIARQVEAEGAKQ
                     VVVVSDDIAKYDAIHNRFPAGTEFHDRAELDAVQRRLREVKGVTVLIYEQTCAAEKRR
                     RRKKGELVDPARRIFINEAVCEGCGDCSVQSNCVAVLPLETKLGRKRKIDQSSCNKDY
                     SCANGFCPSFVSVKGGSLKKRVGALSGAGAGRLEERLRALPLPAPHRWTGPYDLLVTG
                     VGGTGIVTVGAVIAMAAHLEGKSSSVLDFMGFA"
     gene            2444..2965
                     /locus_tag="VF308_10640"
     CDS             2444..2965
                     /locus_tag="VF308_10640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015865855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX7437158.1"
                     /translation="MYVLDRRDVDILTELQRDSRQTVQQLASRVGLSSTPCWKRVKEM
                     EAAGVIRGYSALIDRERVGLQLCVLAEVNLTQHNETLVREFERAVASCPQIISCYSTT
                     GGADYSIKVLAADIKAYEAFLHDTAFKLPGVTHIRSSVVLKEIKSETSLPIHVAGAPA
                     AGPAAKGRAKSGR"
     gene            3072..>3421
                     /locus_tag="VF308_10645"
     CDS             3072..>3421
                     /locus_tag="VF308_10645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013956216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 19 protein"
                     /protein_id="HEX7437159.1"
                     /translation="MIQLASLVAAGIGATQARLFEAPLQAACTRFEIDTPLREAAFVA
                     QCAHESRLFTTLEEGLYYSTPERICAIFRSTVPTLAIAQTLARNAKGLASHVYANRNG
                     NGDEASGDGWRYRGR"
BASE COUNT          550 a         1180 c         1147 g          544 t
ORIGIN      
        1 tgcgcgaaac ccatgaagtc gagcacgctc gaggacttgc cttcgagatg cgccgccatc
       61 gcgatcaccg cgccaacggt cacgatgccg gtgccgccga cccccgtgac gagcaggtcg
      121 tacggcccgg tccagcggtg cggcgcgggc agcggcagcg cgcgcaagcg ctcctcgagc
      181 cgcccggcgc cggcgccgct cagcgcgccg acgcgcttct tcaggctccc gcccttgacg
      241 ctgacaaagc tcgggcaaaa gccgttggcg cacgagtagt ccttgttgca gctcgactgg
      301 tcgatcttgc gcttgcgccc cagcttggtt tcgagcggca gcacggcgac gcagttcgat
      361 tgcaccgagc agtcgccgca gccttcgcac accgcctcgt tgatgaaaat gcgccgtgcc
      421 gggtcgacga gttcgccctt cttgcggcgg cgccgctttt cggcggcgca ggtctgctcg
      481 tagatcagca cggtcacgcc cttgacctcg cgcaggcgcc gctgcaccgc atcgagctcg
      541 gcgcggtcgt ggaattcggt gccggccggg aagcggttgt gaatggcgtc gtacttggcg
      601 atgtcgtcgc tgacgacgac gacctgcttc gcgccttcgg cctcgacctg gcgcgcgatc
      661 cggtcgaccg aaatgatgcc gtcgaccggc tggccgcccg tcatcgcgac ggcatcgttg
      721 tagaggatct tgtaggtgat gttggccttg gccgcgatcg cctggcgcac cgccaggtaa
      781 cccgagtggt agtaagtgcc gtcgcccagg ttctggaaga catgcggcac ctttgtgaac
      841 tgcgcatgcg agacccaatc gacgccctcg ccgcccatct ggatcaggcc cgcggtgtcg
      901 cggttcatcc atgtcgccat gaagtgacag ccgatcccgg gctgcgccag cgaaccttgc
      961 ggcactcgcg tcgacgtgct gtgcggacag ccggcgcaga agtacggcag gcgcttgacc
     1021 gagtcgcttt cgttgctcag cagtttcggc accgtgaagt cgacgaccag ttcgcggcgg
     1081 tcgagctgcg cgaaatggcg cgcgagccac gcggcgacga tctcgatcag gcgcgacggg
     1141 cgcagttcgc ccagcaccgc caccagcggt cgaccggcgg cgtcatgctt gccgatgatc
     1201 accggtcgtg gcgcggcgtt gtagaagagg ccgcgcagct gcgcctcgac gaggccggcc
     1261 ttttcctcga tgaccaggat ctccccgagg ccttccgcga acgcctgcaa ccgggtcggc
     1321 tcgaccggaa aggagagacc gaccttgtag aggcgcacac cggcttcggc gagcgcctcg
     1381 agcgagatgt cgaggcgccg gaagacttcg agcaggtcga agtgcgcctt gccgcaagtc
     1441 acgatgccga ccgtcgcgtg cgccgagcgc acgacgtcgc gatcgatgct gttgaccttg
     1501 gcgaaggcgc gcaccgcttc gagcttttgc agcaggcgct cctcgatctg caacgacggc
     1561 agatctggcc agcggtggtg caggccgtcg gccgggcgca cgtacgcgcc gctcgcctcg
     1621 acttcggccg cggacttcca tgcgccgact cggcgcgccg tctcgtcgag gtcgacggtg
     1681 ctgccgctct cgaccacttc ggagagcgcc gtcaagccga cccagttgcc cgagaagcgc
     1741 gacaggtccc agccgtacag gccgaactcg aggtactcgg ccacgttcgc cggcgcgacc
     1801 gtcggcatgt gccaggcctg gaatgcgagg tcgctctgat gcggcatcga cgacgagacg
     1861 cagccgtggt cgtcgcccgc cacgaccagc acgccgccgt gcggcgacga gccgtaggcg
     1921 ttgccgtgct tgagcgcgtc gccggcacgg tcgacccccg ggcccttgcc gtaccacatt
     1981 gcgtacacgc cgtcggcggt gcgctcggga tccgattcga cgcgctgcgt gccgagcacg
     2041 gcggtcgccc cgagttcctc gttgatggcc ggcaggaagc gcacgccgcg cgcatcgagc
     2101 agggccttgg ccttccatgc cgccaggtcg accatgccga gcggcgagcc gcgatagccg
     2161 ctgatgaagc cctggctgcg gatgccgcgc tccgcatcgc gaatgccccg catcaatgcc
     2221 agccggataa gcgcctgggt gccggtgaga aagacctgac cggaggtcgc ttcgaggttg
     2281 tcggcgaggc ggtagtcgct gcgcagggag gttggtggca tggcgcgctc gcggtctcgg
     2341 aaaatcgtca atctacgctc cctttcgccg aatcgggttc tttttcaacc gccacgggcg
     2401 acgattcgta gaatgaatca acttcgattt cgtggaacca gccatgtacg ttctcgaccg
     2461 ccgcgacgtc gacatcctca ccgagctgca gcgcgattcg cgccagacgg tgcagcaact
     2521 ggccagtcgt gtcggcctct cgtcgacacc gtgctggaag cgcgtcaagg agatggaggc
     2581 ggccggcgtg atccgcggct atagcgcgct catcgaccgc gagcgcgtcg gcctgcagct
     2641 gtgcgtgctc gccgaagtga acctgacgca gcacaacgag acgctggtgc gcgagttcga
     2701 acgcgccgtc gccagctgcc cgcagatcat cagctgctac agcacgaccg gaggcgccga
     2761 ctacagcatc aaggtgctcg ccgccgacat caaggcgtac gaggctttcc tgcacgacac
     2821 cgcgttcaag ctgcccggcg tcacgcatat ccgctcgagc gtcgtgctga aggagatcaa
     2881 gtcggagacg agcctgccga tccacgtggc gggtgcgccg gccgcgggcc cggccgcgaa
     2941 ggggcgcgca aagagcggcc gctgagcggc gccggtggca cgccacggcg ccccaccctc
     3001 ggaacgattg cgtcgccgcc ctttcccgac gcatgatcgc cgacatcgcg cctatcgcgc
     3061 ggagggcaac catgatccaa ctcgcgtctc tggtggcagc cggcatcggg gcgacccagg
     3121 cccgcctgtt cgaggcgcca ctgcaggcgg catgcacgcg cttcgagatc gacacgccgt
     3181 tgcgcgaggc cgcgttcgtc gcccagtgcg cacacgagtc gcgtctcttc acgacgctcg
     3241 aggaaggcct gtactacagc accccggaac gcatctgcgc gatctttcgc agcaccgtgc
     3301 cgacgctcgc aatcgcgcag acgctcgccc gcaacgcgaa ggggctcgcc agccatgtct
     3361 atgccaatcg caacggcaac ggcgacgagg cgagtggcga cggctggcgc taccgcgggc
     3421 g
//
LOCUS       DASVHM010000567         2700 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_908653, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000567 DASVHM010000000
VERSION     DASVHM010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2700
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_908653"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..220)
                     /gene="raiA"
                     /locus_tag="VF308_10650"
     CDS             complement(<1..220)
                     /gene="raiA"
                     /locus_tag="VF308_10650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_component: GO:0022626 - cytosolic ribosome [Evidence
                     IEA];
                     GO_function: GO:0045182 - translation regulator activity
                     [Evidence IEA];
                     GO_process: GO:0009386 - translational attenuation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HEX7437160.1"
                     /translation="MNLTISGHHLDVSPALREYVLTKLDRVTRHFDQVVDITVLLSVE
                     KLSEKERRQKAEVTLHVKGKDIFVEQASE"
     gene            522..1220
                     /gene="modA"
                     /locus_tag="VF308_10655"
     CDS             522..1220
                     /gene="modA"
                     /locus_tag="VF308_10655"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7437161.1"
                     /translation="MTIFAAASLADVLGALAARPARPGPTLRLSFAASSTLARQIEQG
                     ALADLFISADEAWMDYLVDKRRIVAESRRDLVANRLVIVRAGAPAGAEPSESTAAIRA
                     ALLTSAGAGADRIATGDPAHVPAGRYAQAALIRLGLWSQVEPRLVRADSVRSALTFVE
                     RGEAAAGIVYATDALLSRQVRTVARFPEASHAPIRYPAALVVGHVPAARAVLAELFTP
                     EAQAAFQAAGFGRA"
     gene            1406..2368
                     /gene="corA"
                     /locus_tag="VF308_10660"
     CDS             1406..2368
                     /gene="corA"
                     /locus_tag="VF308_10660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015914531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEX7437162.1"
                     /translation="MLNVFTLANGRLFQEEIESLDALAGLKPVWVDLDAPTAEEKGWI
                     AQHFGVTIPDDAVDDDLEESARFYEEDNGELHIRSDFLIDDDETPRNVRVAFILHNNV
                     LFSVHSEELPVFRLLRLRARRIPALIEDAKDVLLKLYDADAEYSADALESIYDTLEAV
                     SARVLRQPVNDQEAGEALSAIAREEDSNGRIRRNVMDTRRAVSFMMRSRMLNAEQFEE
                     ARQILRDIDSLDSHSTFLFDKINFLMNATVGFININQNKIIKIFSVASVALLPPTLIA
                     SIYGMNFKAMPELDWGFGYPFALLLMLASVAAPFIYFRRKGWLR"
     gene            complement(2400..>2700)
                     /locus_tag="VF308_10665"
     CDS             complement(2400..>2700)
                     /locus_tag="VF308_10665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011617369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4-deoxy-4-formamido-L-arabinose-
                     phosphoundecaprenol deformylase"
                     /protein_id="HEX7437163.1"
                     /translation="LPTLDELIGSDGTDERNVAAAILALTGSGQDQVFTLHAELEGGL
                     LAPAFDALLRGWRAQGHELVSLGALHRHVERDALAALAPRWGSVPGRSGELIVAP"
BASE COUNT          413 a          919 c          900 g          468 t
ORIGIN      
        1 cttcgctcgc ctgctcgacg aagatgtcct tgcccttgac gtgcagcgtc acctcggcct
       61 tctggcgccg ttccttctcg ctcagtttct ccacggaaag cagcacggtg atgtcgacga
      121 cctggtcgaa atggcgtgtg acccgatcca gtttggtgag cacatactct ctcagtgcag
      181 gagagacgtc aaggtgatgg ccgctgatcg tcaggttcat gaagttcctt tcgcgacagg
      241 tgggaggggg tgcgggcggg gacgaccggg agggagggtg cgcggaaggc acgcggtcgt
      301 tcggctcagt gtgccaatga tcctggagca tgacaagtcg atgccatcaa tatccgcagg
      361 gtgctgtccg ctcggtcgtg cgatccttcg cgctatgctc cttcgatgac cagttcgggt
      421 gctcggtgac gcagcgccgc agcctcgttc gtgcagcggc cgctgcgggc ctcggcgcct
      481 gcggcctcgg ggagaggggg cgggccctcg cggctgaaat cgtgacgatc ttcgcggccg
      541 cgagcctggc cgatgtgctg ggcgcgctcg ccgcgcggcc ggcgcgcccc gggccgacgc
      601 tgcgcctctc gttcgcggcg agttcgacgc tcgcgcgcca gatcgagcag ggcgcgctcg
      661 ccgatctctt catcagcgcc gacgaggcgt ggatggacta cctcgtcgac aagcgccgca
      721 tcgtcgccga atcgcgccgt gacctcgtcg ccaatcgcct cgtcatcgtg cgggccggtg
      781 cgcccgccgg cgccgagccc tcggagtcga cggcggccat tcgcgctgcg ctgctgacga
      841 gcgcgggcgc cggtgcggac cgcatcgcga ccggcgatcc ggcccatgtc ccggccggcc
      901 gctacgccca ggcggcgctc atccggctcg gcctgtggtc gcaggtcgag cccaggctcg
      961 tgcgcgccga cagcgtgcgt tcggcgctca ccttcgtcga acgcggcgaa gccgcggccg
     1021 gcatcgtcta cgcgaccgac gcgctgctct cgcgccaggt tcgaacggtc gctcgctttc
     1081 ccgaggcgag tcatgcgccg atccgctatc ccgcggcgct ggtggtcggg cacgtcccgg
     1141 cggcgcgcgc ggtgttggcc gaattgttca cgcccgaagc gcaagccgcg ttccaggccg
     1201 cgggcttcgg cagggcctga tgcgataatt tcggcatcgc atccacgggc gttttcttgg
     1261 acatcccgca ccctcggtga ccgtccgccc cagcgcatgc cgcgcccctc ggcgccggca
     1321 tagatcgggg tgatgcggtc gctacccttc accccacggc atcgcagact cgtcggtcgg
     1381 actgcgttgc gcgctggaga gttgcatgct aaacgtgttc acgctggcca acggccgcct
     1441 gttccaggaa gagatcgaaa gcctcgacgc gctcgccggc ctgaagccgg tctgggtcga
     1501 tctcgacgcg ccgaccgccg aggagaaggg ctggatcgcg caacacttcg gcgtgacgat
     1561 cccggatgac gcggtcgacg acgatctcga ggaatcggct cgcttctacg aggaagacaa
     1621 cggcgagctg cacatccgct ccgacttcct gatcgatgac gacgagacgc cgcgcaacgt
     1681 gcgcgtcgcc ttcatcctgc acaacaacgt gctgttctcg gttcacagcg aagagctgcc
     1741 ggtgttccgg ctgctgcgcc tgcgggcgcg gcggatcccg gccttgatcg aggatgccaa
     1801 ggacgtgttg ctcaagctct acgacgccga cgccgagtat tcggccgatg ccctcgaaag
     1861 catctacgac acgctcgaag cggtgagcgc tcgcgtgctg cgccagccgg tgaacgatca
     1921 ggaggcgggc gaagcgctgt cggcgatcgc ccgcgaggaa gactcgaacg gccggatccg
     1981 ccgcaacgtg atggacacgc gccgcgcggt cagcttcatg atgcgcagcc gcatgctcaa
     2041 tgccgagcag ttcgaggagg cgcgccagat cctgcgcgac atcgactcgc tcgacagcca
     2101 cagcacgttc ctgttcgaca agatcaactt tctgatgaac gcgaccgtcg gcttcatcaa
     2161 catcaaccag aacaagatca tcaagatctt ctcggtcgcg agcgtcgcgc tgctgccgcc
     2221 gaccctgatc gcgagcatct acggcatgaa cttcaaggcc atgcccgaac tcgactgggg
     2281 gttcggctat ccgttcgccc tgctgctgat gctcgcttcg gtcgccgcgc cgttcatcta
     2341 tttccggcgc aagggctggc tgcgctaggc atccggccga agagggcgcc ccgttgcgtc
     2401 tagggcgcga cgatcagctc tccgctgcgt cccggcacgc tgccccacct cggggcaagc
     2461 gccgccaacg catctctctc gacatggcgg tggagggcgc cgagcgacac cagctcatgg
     2521 ccctgggccc gccatccgcg gagcagggcg tcgaacgcgg gtgcgaggag tccgccttcg
     2581 agttcggcgt gaagggtgaa aacctggtcc tgcccggatc cggtcagggc cagaattgcc
     2641 gccgcgacgt tgcgctcgtc ggtgccgtcg ctgccgatca attcgtccag cgtcggcaat
//
LOCUS       DASVHM010000568         2071 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1342176, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000568 DASVHM010000000
VERSION     DASVHM010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2071
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1342176"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /locus_tag="VF308_10670"
     CDS             complement(<1..455)
                     /locus_tag="VF308_10670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0280 family protein"
                     /protein_id="HEX7437164.1"
                     /translation="MSGAQRQRLLDGRWHFQHGPIDCIVGADGDPVAVAAAIERAWAR
                     FGAVLAELVGELPLLRTDLSSAEGAVLAPHGPVARRMVDACRVHATQGCFITAMAAVA
                     GSVAEELIAFFDDPRIARAYVNNGGDIALHLGPDASFEIGWVADADRAL"
     gene            complement(452..1996)
                     /locus_tag="VF308_10675"
     CDS             complement(452..1996)
                     /locus_tag="VF308_10675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007864204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-hydroxynicotinate reductase"
                     /protein_id="HEX7437165.1"
                     /translation="MSESNVAPPEFGPRSDGQPVVLEHSRAPERMAADKVRCEACPVL
                     CQISPGKLGACDRYGNVDGRLTRTDTVHLLRRPGSERVEWSAAREGGWDGALLDDAPV
                     FVTGVGSGTTYPDYKPAPFIIASKHQGVDMVTVVTEGIFSYCSFKVKIDTDRYLGPEQ
                     ATVRHQGEPVGHVTTIEYGSQFLALGGVHHLTGGSKREGRISCDVMMALGNRQPVELQ
                     IEGGATLTVQAGKAPIVNGVEEQRMRVGCGSATIGIFAQQWFGHVDEVVVVDDHITGV
                     LSEHQAGKCLDMAPTGIRLRGRKSTPGRYFQVANPGSGWGGTDITEPLSIVEAWDPKQ
                     ARPGLRLLMVSTTGEDSAWYVLDEQLVPQPAEMPDAVRHVVERIGENCEPSLASVLYV
                     AGAGGSLRAGVTENPVRLTESIKDLLVNVTCGGAPVYVWPGGGITVMVDVARMPANSF
                     GSVPTPAIVSPIEFTMRLDDYRLLGGHMDRVRRLEDVLAGGDFKLIDAFASNPWPMRA
                     PPGVGR"
BASE COUNT          303 a          726 c          735 g          307 t
ORIGIN      
        1 cagagggcgc gatccgcgtc tgcgacccag ccgatctcga acgacgcgtc gggcccgagg
       61 tggagcgcga tgtcgccgcc gttgttgacg taggcgcgcg cgatgcgcgg gtcgtcgaaa
      121 aaggcgatta gttcctcggc cacgctgccg gcgacggccg ccatcgcggt gatgaagcag
      181 ccctgcgtcg catggacgcg gcacgcatcg accatgcggc gcgcgaccgg gccgtgcggg
      241 gcgagcacgg cgccttcggc cgaagagaga tcggtgcgca gcaagggcaa ctcgccgacg
      301 agttcggcga gcacggcgcc gaagcgcgcc caggcccgct cgatcgcggc ggcgaccgcg
      361 accgggtcgc catcggcgcc gacgatgcag tcgatcgggc cgtgctggaa atgccagcgc
      421 ccgtccagca agcgctggcg ctgtgcgccg ctcatcgccc gactcccggc ggcgcgcgca
      481 tcggccaggg gttgctcgcg aacgcgtcga tcagcttgaa gtcgccgccc gcaagcacgt
      541 cttcgagccg gcgcacccga tccatgtggc cgccgagcag acggtagtcg tcgagccgca
      601 tcgtgaactc gatcggcgag acgattgccg gcgtcggcac gctgccgaaa ctgttcgccg
      661 gcatgcgcgc aacgtcgacc atcacggtga tgccgccgcc cggccacacg tacaccggcg
      721 cgccgccgca ggtcacgttg acgagcaggt ccttgatcga ctcggtgagc cgcaccggat
      781 tttcggtcac gccggcgcgc agggatccgc cggcgccggc gacatagagc accgaggcga
      841 gcgaaggctc gcagttctcg ccgatgcgct cgacgacgtg gcgcaccgcg tcgggcatct
      901 ccgccggttg cggcacgagt tgctcgtcta gaacgtacca ggccgagtct tcgccggtgg
      961 tcgagaccat cagcaggcgc agcccggggc gcgcttgctt ggggtcccag gcctcgacga
     1021 tcgaaagcgg ctcggtgatg tcggtgccgc cccagcccga gcccggattc gcgacctgga
     1081 aatagcgccc tggcgtcgac ttgcggccgc gcaggcggat cccggtcggc gccatgtcga
     1141 ggcacttgcc ggcctggtgt tcgctgagca cgccggtgat gtggtcgtcg acgacgacca
     1201 cttcgtcgac atggccgaac cactgctgcg cgaagatgcc gatcgtcgcc gacccgcagc
     1261 cgacgcgcat gcgctgctcc tcgacgccgt tgacgatcgg cgccttgccg gcctgcaccg
     1321 tcaaggttgc gccgccttcg atctgcaact cgaccggctg ccggttgccg agcgccatca
     1381 tcacgtcgca gctgatgcgg ccttcgcgct tcgagccacc cgtgaggtgg tgtacgccgc
     1441 cgagggcgag gaactgcgag ccgtactcga tcgtcgtgac gtggccgacc ggctcaccct
     1501 ggtgccgcac cgtggcctgc tcggggccga ggtagcggtc ggtgtcgatc ttcaccttga
     1561 agctgcagta gctgaagatg ccttcggtga cgaccgtcac catgtcgacg ccctggtgct
     1621 tcgacgcgat gatgaacggc gccggcttgt agtcggggta ggtggtgccc gagccgacgc
     1681 cggtgacgaa caccggcgca tcgtcgagca gcgcgccgtc ccagccgcct tcccgggcgg
     1741 ccgaccattc gacccgttcg ctccccgggc gacgcaggag gtgcacggtg tcggttcggg
     1801 tcagcctgcc gtcgacgttg ccatagcggt cgcaggcgcc gagcttgccc gggctgatct
     1861 ggcacagcac cgggcaggcc tcgcagcgca ccttgtcggc cgccatgcgc tccggcgcgc
     1921 gcgaatgctc gagcacgacg ggctggccat cggagcgcgg gccgaattcg gggggagcga
     1981 cgttggactc gctcacgacg ccggtctctc gagcagcgcg gcgcgcagcc ggctcggcgt
     2041 gaccggcacg cggctcatgc gcacgccggt c
//
LOCUS       DASVHM010000569         5697 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_184247, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000569 DASVHM010000000
VERSION     DASVHM010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5697
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184247"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..390)
                     /locus_tag="VF308_10680"
     CDS             complement(<1..390)
                     /locus_tag="VF308_10680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX7437166.1"
                     /translation="MAASKKVTVYGAIAANLGIAVMKFAGAATTGSSAMLSEGIHSMV
                     DTGDGLLLLVGMHLSQRKADERHPFGYGKELYFWSLIVAVLIFGVGGGVSIYEGVLHL
                     IDPKQLEDAGWSYAILGVAALFEGTNFA"
     gene            complement(404..3067)
                     /locus_tag="VF308_10685"
     CDS             complement(404..3067)
                     /locus_tag="VF308_10685"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007828684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HEX7437167.1"
                     /translation="MTKALIIAEKPSVAQDIVRALTTTSGKFDKHDEYFESDKYVVTS
                     AVGHLLEIKAPEEFDVKRGKWSFANLPVIPPHFEMSPIDKTKTRLNAILRLVKRKDVT
                     ELINACDAGREGELIFRLIQQHAKSKQPVRRLWLQSMTPAAIRDGFEHLRSDKQMLPL
                     ADAARCRSEADWLVGINGTRAMTAFNSRDGGFFLTTVGRVQTPTLSIMVEREEKIRKH
                     VARDYWEVRANFAVAAGEYEGKWFDATWKKNPDDPELRSDRLWNVEDAQAIADAVQGQ
                     PASVTEEAKPSTQAPPALFDLTSLQREANSRFGFSARTTLSIAQALYEKHKVLTYPRT
                     DSKALPEDYVSVAKQTMQMISTETLPGPLRALAVHAKTALKEGYVKPNKRIFDNAKIS
                     DHFAIIPTLLPPKSLTEIEAKLYDMVAKRFMAVFFPSAEFMVTTRISTVQAAGREIPF
                     QTNGKVMIKAGWLAIYGRDAQEDDANLVAVAAGELARTESVEVKAQRTRPPARYTEAT
                     LLSAMEGAGKLIDDDELREAMQEKGLGTPATRAAIIEGLIYEKYIHREGRELVPGAKA
                     FQLMTLLRGLGVEDLTKPELTGNWEFQLAEMEKGRLERDAFMREIAAMAERIVRKAKE
                     YDRDTIPGDYATLATSCPNCGGVVKENYRRYACTGKVASGDAGSAATEGCGFSISKIP
                     GGRAFELDEVERFLADKKIGPLEGFRSKAGWPFTAEIRLVHDAELGNWKLEFDFGEDA
                     KKEGASGEPVDFSGQESLGSCPKDQGHVYEHGSSYVCEHAVGAHVTCDFKSGKIILQQ
                     PVPREQMSKLLATGKTDLLEGFVSNKTRRKFKAYLAYDKKEGKVSFEFEPRAARPPAA
                     AKKAGAAKTAAVKTAATKPVAAKKVAKKKGA"
     gene            3179..3676
                     /locus_tag="VF308_10690"
     CDS             3179..3676
                     /locus_tag="VF308_10690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011299518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HEX7437168.1"
                     /translation="MAEARTSNTPDPKATKRAGPRIQVRRSGVHGKGVFALAPFARGE
                     RIVEYTGEMITWKEALRRHPHNPADPDHTFYFHIDDGRVIDGKSGGNAAKWINHSCQP
                     NCETDEEGDRVFVKAKRAIKAGEELNYDYGLILDGRHTAKVKKQFECRCGSRKCRGTM
                     LAPKG"
     gene            3690..4526
                     /locus_tag="VF308_10695"
     CDS             3690..4526
                     /locus_tag="VF308_10695"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEX7437169.1"
                     /translation="MADSHWNAEALRSQLETLWPGIGIEIVGETGSTNTDLVDRTRAA
                     SAFAPSLRVAELQSAGRGRQGRPWLSERGASLTFSLAVPLAAADWSGLSLAVGVALAE
                     ALDAPDPEHRIGLKWPNDLWLLDAPGRGRKLGGVLIETVSMGAQRIAIIGVGLNLRPI
                     SAGVEVATGYACLEELTVNVAAPAVLERVAGPLATALPLFERAGFAAFHERFAVRDLL
                     FDQPVRTTHADALEGVAAGVTPQGALMIRTPAGIVASVSSGEVSVRVAPASAAAASPP
                     PC"
     gene            4520..5185
                     /locus_tag="VF308_10700"
     CDS             4520..5185
                     /locus_tag="VF308_10700"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEX7437170.1"
                     /translation="MLRALVALLLFANLAFFAWTQGWLDGIVGVRARGDREPERLASQ
                     VHPEDVVVLAGTASAAAPAGAPSCLEAGPFTPAEAGAAEGALLSAAPGTAWTNLRTEK
                     AGTWLVYMGGFPDRETRQRKEEEIRRVLPDFEEVSVPGEGAFGLALGRFDDRANADKA
                     LAQFAQRGIRTARVVQLSPASTIHTLRIERADAALAAQLAALKVEALGKGFAACATGE
                     AAR"
     gene            complement(5182..>5697)
                     /locus_tag="VF308_10705"
     CDS             complement(5182..>5697)
                     /locus_tag="VF308_10705"
                     /inference="COORDINATES: protein motif:HMM:NF012999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HEX7437171.1"
                     /translation="SADQLQCVCKAGLCGAGMLDARAAVLAAAGVQARVTVSPSAAVA
                     GQPVTFSSSSLIPAGVTATYKWAVTSDPSAIVPSLSGATGSTLSVTPTGAGTFSISLT
                     TTDSNSVVSSEAVTVVVAAAPSTTPLGTSGGSGSSGGGGGGGALGIGWLLLLLGAVVA
                     LRVVPGARARG"
BASE COUNT          822 a         1992 c         1945 g          938 t
ORIGIN      
        1 ggcgaagttc gtgccctcga acagcgccgc gacgccgagg atcgcgtagc tccagccggc
       61 gtcctcgagc tgcttgggat cgatgaggtg cagcacgcct tcgtagatcg acacgccgcc
      121 gccgacgccg aagatcagca cggcgacgat caggctccag aagtagagct ccttgccgta
      181 gccgaacgga tggcgctcgt cggccttgcg ctggctcagg tgcatgccga ccaggagcag
      241 caggccgtcg ccggtgtcga ccatcgagtg gatgccttcg gaaagcatcg ccgaactccc
      301 ggtcgtggcg gcgccggcga acttcatcac ggcaatgccc aggttcgcgg cgatcgcgcc
      361 gtagaccgtg accttcttcg aggcggccat gcccgcggtc cggctaggcg cccttcttct
      421 tcgcgacctt cttcgcggcc accggcttcg tcgccgctgt cttcacggcg gccgtcttcg
      481 cggcaccggc cttcttcgcc gcggcgggcg ggcgcgccgc ccggggctcg aactcgaagc
      541 tgaccttgcc ttccttcttg tcgtaggcga ggtaggcctt gaacttgcgc cgcgtcttgt
      601 tcgagacgaa gccttcgagc aggtcggtct tgccggtggc gaggagcttg ctcatctgct
      661 cgcgtgggac aggctgctgc aggatgatct tgccgctctt gaagtcgcag gtgacgtgcg
      721 cgccgaccgc gtgctcgcag acgtagctgc tgccgtgctc gtagacatgg ccctggtcct
      781 tcgggcagga gccgaggctt tcctggcccg agaagtcgac cggttcgccg gaggcgcctt
      841 ccttcttcgc gtcttcgccg aaatcgaact cgagcttcca attgccgagc tcggcgtcgt
      901 ggacgagcct gatctcggcc gtgaacggcc agccggcctt ggagcgaaag ccctcgagcg
      961 ggccgatctt cttgtcggcg aggaagcgct cgacctcgtc gagctcgaag gcgcggccgc
     1021 cggggatctt gctgatcgaa aagccgcagc cctcggtcgc cgccgaaccg gcatcgcccg
     1081 acgcgacctt gccggtgcag gcgtagcgcc ggtagttctc cttgaccacg ccgccgcagt
     1141 tcgggcacga cgtggcgagc gtcgcatagt cgcccgggat cgtgtcgcgg tcgtactcct
     1201 tggccttcct gacgatgcgc tcggccatcg ccgcgatctc gcgcatgaag gcgtcgcgct
     1261 cgaggcggcc cttctccatc tcggcgagct ggaactccca gttgccggtg agctcgggct
     1321 tggtcaggtc ttcgacgccg aggccgcgca gcagcgtcat cagctggaac gccttcgcac
     1381 cgggcacgag ctcgcggcct tcgcggtgga tgtacttctc gtagatcagc ccttcgatga
     1441 tcgcggcgcg cgtggccggc gtgccgaggc ccttctcctg catcgcctcg cgcagctcgt
     1501 cgtcatcgat cagcttgccg gccccttcca tcgccgagag cagcgtcgcc tcggtgtagc
     1561 gcgccggcgg ccgggtccgc tgcgccttga cctcgacgct ctcggtgcgc gccagctcgc
     1621 cggcggcgac ggcgacgagg ttggcgtcgt cctcctgcgc gtcgcggccg tagatcgcga
     1681 gccagccggc cttgatcatc accttgccgt tggtctggaa cgggatctcg cgcccggccg
     1741 cctgcaccgt cgagatgcgc gtcgtgacca tgaattcggc cgacgggaag aacaccgcca
     1801 tgaagcgctt ggcgaccatg tcgtagagct tggcctcgat ctcggtcagg ctcttcggcg
     1861 gcagcagcgt cgggatgatc gcgaagtggt cggagatctt ggcgttgtcg aagatgcgct
     1921 tgttcggctt gacgtagcct tccttcaatg ccgtcttcgc gtgcacggcg agcgcgcgca
     1981 gcgggccggg cagcgtctcg gtcgagatca tctgcatcgt ctgcttggcg acgctgacat
     2041 agtcttccgg cagggccttg ctgtcggtgc gcggatacgt gaggaccttg tgcttctcgt
     2101 agagcgcctg cgcgatcgac agcgtggtgc gcgccgaaaa gccgaagcgc gagttggctt
     2161 cgcgctgcag gctggtcagg tcgaagagcg cgggcggcgc ctgcgtgctc ggcttggcct
     2221 cctcggtcac gctcgccggc tggccctgca ccgcgtcggc gatggcctgc gcatcttcaa
     2281 cgttccagag gcggtccgag cgcaactcgg gatcgtcggg gttcttcttc caggtcgcgt
     2341 cgaaccactt gccctcgtac tcgccggccg cgaccgcgaa gttcgcgcgg acctcccagt
     2401 agtcgcgcgc gacgtgcttc ctgatcttct cctcgcgctc gaccatgatc gagagcgtcg
     2461 gcgtctgcac ccgcccgacg gtcgtcagga agaagccgcc gtcgcgcgag ttgaaggccg
     2521 tcatcgcgcg cgtgccgttg atgccgacga gccagtcggc ctcggagcgg cagcgcgcgg
     2581 catcggcgag cggcagcatc tgcttgtcgc tgcgcaggtg ctcgaagccg tcgcggatcg
     2641 cggccggggt catgctctgc agccagagcc gccgtaccgg ctgcttcgac ttggcgtgct
     2701 gctggatcag ccggaagatc agctcgcctt cgcgcccggc gtcgcaggcg ttgatcagct
     2761 cggtgacgtc cttgcgcttg acgagcctga gtatcgcgtt gaggcgcgtc ttggtcttgt
     2821 cgatcgggct catctcgaag tgcggcggga tcaccggcag attcgcgaag ctccacttgc
     2881 cgcgcttgac gtcgaactct tccggcgcct tgatctcgag caggtggccg accgccgagg
     2941 tgacgacgta cttgtcgctt tcgaaatatt cgtcgtgctt gtcgaacttg cccgaggtgg
     3001 tcgtgagcgc acggacgatg tcctgcgcga cggaaggctt ctcggcaatg atcagtgctt
     3061 tggtcatcag tctcgtcgtc gttggtctcg cgcgccgcag cgcatcccta caatccgggc
     3121 ttctcgcgcg cacgtgcacg cgcgcgcacc catgaattca atgtacccaa agaatccgat
     3181 ggcggaagcc cgtacctcca acacccccga ccccaaggcg acgaaacgcg ccggcccgcg
     3241 catccaggtg cggcgctccg gcgtgcacgg caagggcgtc ttcgccctcg cgccgttcgc
     3301 cagaggcgag cgcatcgtcg agtacaccgg cgagatgatc acctggaaag aggcgctgcg
     3361 ccggcatccg cacaaccccg ccgacccgga ccataccttc tacttccaca tcgatgacgg
     3421 ccgtgtgatc gacggcaagt cgggcggcaa cgccgccaag tggatcaacc actcgtgcca
     3481 gcccaactgc gagaccgacg aggaaggcga ccgcgtgttc gtgaaagcca agcgcgccat
     3541 caaggcgggc gaggagctga actacgacta cggcttgatt ctcgacgggc gtcacaccgc
     3601 aaaggtcaag aagcagttcg agtgccgttg cggcagccgc aagtgccgcg gcacgatgct
     3661 cgcacccaag ggctgaggcg ggcggcgcga tggcggattc gcactggaac gccgaagcgc
     3721 ttcgatcgca gctcgaaacg ctgtggcccg ggatcggcat cgagatcgtc ggcgagaccg
     3781 ggtcgaccaa caccgacctc gtcgatcgga cgcgtgccgc ctcggccttc gcaccgagcc
     3841 tgcgggtcgc cgagctgcag agtgccgggc gcggacgcca gggccggccc tggctctcgg
     3901 agcgcggcgc ctcgctgacg ttttcgctcg ccgtgccgct ggccgccgcc gactggtcgg
     3961 gcctctcgct cgcggtcggc gtggcgctcg ccgaggcgct ggatgctccc gatcccgaac
     4021 atcgcatcgg cctcaaatgg ccgaacgacc tgtggctcct cgacgcgccg ggccgcggca
     4081 ggaagctcgg cggcgtgctg atcgaaaccg tgtcgatggg ggcgcagcgc atcgcgatca
     4141 tcggcgtcgg cctcaacctg cggccgattt cggccggcgt cgaggtcgcg accggctacg
     4201 cctgcctcga agagttgacc gtgaacgtgg ccgcaccggc cgtgctcgag cgcgtcgcgg
     4261 ggccgctcgc cacggcgctg cctctcttcg agcgcgccgg cttcgcggcc tttcacgagc
     4321 gcttcgcggt gcgcgacctg ctcttcgacc agccggttcg aaccacgcac gccgacgccc
     4381 tcgaaggcgt cgccgcgggc gtcacgccgc aaggcgctct catgatccgc acgcccgccg
     4441 ggatcgtcgc cagcgtgtcg agcggtgaag tgagcgtgcg agtcgccccc gcgagcgccg
     4501 cggccgcgag cccaccgcca tgctgagggc gctcgtcgcg ctgctgctct tcgccaacct
     4561 ggccttcttc gcatggaccc agggctggct cgacggcatc gtcggcgtgc gcgcgcgcgg
     4621 cgaccgggaa cccgagcggc tcgccagcca ggtccacccg gaagacgtcg tggtcctggc
     4681 ggggacggcg agcgccgcgg cgcccgcggg ggcgccgtcg tgcctcgagg cgggcccgtt
     4741 cacacccgcc gaagcgggcg ccgcggaggg cgccttgctg agcgccgcgc cgggcaccgc
     4801 ctggaccaac ctgcgcaccg agaaggccgg gacctggctg gtctacatgg gcggctttcc
     4861 cgaccgcgag acgcgccagc gcaaggaaga agagatcagg cgggtgctcc ccgatttcga
     4921 ggaagtctcg gtgccgggcg aaggcgcgtt cggcctcgcg ctcggccgtt tcgacgaccg
     4981 cgccaatgcc gacaaggcgc tcgcgcaatt cgcacagcgc ggcatccgca cggcgcgcgt
     5041 cgtgcagctc agcccggcgt cgacgatcca caccttgcgc atcgagcgcg ccgatgcggc
     5101 gctggccgca caactcgcgg cgctgaaggt cgaggcgctc ggcaagggtt tcgcggcctg
     5161 cgcgaccggc gaggccgcgc gctagccgcg cgcccgcgcc cccggcacga cgcgcagcgc
     5221 gacgaccgcg ccgagcagaa gcaacagcca gccaatgccg agggcgccgc caccgccgcc
     5281 gccaccactg ctgccgctgc cacccgaagt gcccagcggc gtggtgctcg gggcggcagc
     5341 caccacgacg gtcactgcct cggacgacac cacactgttg ctgtccgtcg tggtcaggct
     5401 gatcgagaac gtgccggcgc cggtcggtgt caccgacagc gttgaccccg tcgcgccgga
     5461 aagcgacggg acgatggcgc tcgggtcgct cgtcaccgcc cacttgtagg tggccgtgac
     5521 gcccgcggga atcagggacg atgaactgaa cgtcaccggc tggccggcca ctgcagcgct
     5581 cgggctcacc gtgacgcgcg cctgaacgcc agcggccgcg aggaccgcgg cgcgggcatc
     5641 gagcatgccg gcaccgcaca ggcccgcctt gcagacgcac tgcaactggt cggcgga
//
LOCUS       DASVHM010000570         1849 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1342193, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000570 DASVHM010000000
VERSION     DASVHM010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1342193"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..349
                     /locus_tag="VF308_10710"
     CDS             <1..349
                     /locus_tag="VF308_10710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEX7437172.1"
                     /translation="DALTDRSDRFLASEIIREKLFRLTGDELPYTSTVVIDKYEEEGR
                     LRRIAASIVVERDAHKGMIIGAGGERLKRIGSESRQELETLLDAKVFLELWVKVRSGW
                     ADDEAHLRSYGYE"
     gene            346..1134
                     /gene="recO"
                     /locus_tag="VF308_10715"
     CDS             346..1134
                     /gene="recO"
                     /locus_tag="VF308_10715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEX7437173.1"
                     /translation="MTARSASGRAHRAGSTLAAYVLHRYDWSESSLILDLFTREQGRI
                     AVAAKGAKRPYSQLRAVLLPFQRISVSLGRTPGAETAEVRNLRAAEWAGGAAMLGGAA
                     LFSGFYLNELLMKLLARHDPHPALFDAYAETLGALPQGNDVAAEAALRAFELTLLKEI
                     GVLPELSLATLTQLPVDAERRYSLLADVGVGEQRPGDADIAGATLIGLQAALEHGSLP
                     ALQQACAAALPELKGILRAQLHYHLGSSVLRTRQVMVEAQNLER"
     gene            1157..>1849
                     /locus_tag="VF308_10720"
     CDS             1157..>1849
                     /locus_tag="VF308_10720"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEX7437174.1"
                     /translation="MNPLVTSGLDPHRGGTRLSVNVNKVALLRNSRALDIPNLVRFAT
                     IALEAGAGGITIHPRPDERHIRARDVDDLAALMKAWPQAEFNIEGNPFHNLMGFVEAV
                     RPQQCTFVPDSAEQATSDHGWRLPEDVERLRPVIATARALGVRVSLFMDPQPGAMRAV
                     REIGADRVELYTESYARTRGTPRGPEVLAGFVAAAEAALREGLGVNAGHDLSRENLTE
                     FLRAVPGVQEVSI"
BASE COUNT          285 a          645 c          638 g          281 t
ORIGIN      
        1 agatgcgctc acggaccgca gcgaccgctt tctggccagc gagatcatcc gcgaaaagct
       61 tttccgcctg accggcgacg agttgcccta tacctcgacc gtcgtcatcg acaagtacga
      121 ggaagaaggc aggctgcgtc ggatcgccgc gagcatcgtc gtcgagcgcg acgcccacaa
      181 gggcatgatc atcggcgccg gtggcgagcg gctcaagcgc atcggctccg agtcgcggca
      241 ggagctcgag accctgctcg acgccaaggt ctttctggaa ctgtgggtca aggtccgctc
      301 cggctgggcc gacgacgagg cgcatctgcg cagctacggc tacgaatgac cgcccggtcc
      361 gcaagtggcc gcgcgcaccg tgccggctcc acgctcgcgg cctatgtgct gcaccgctac
      421 gactggagcg aatcgagcct gatcctcgat ctcttcacgc gcgagcaggg gcggatcgcg
      481 gtcgcggcca aaggggccaa gcgcccgtat tcgcagctgc gcgccgtgtt gctgccgttc
      541 cagcgcatca gcgtctcgct cgggcgcacg cccggcgccg agacggccga ggtgcgcaac
      601 ctgcgcgccg ccgaatgggc gggcggcgcg gcgatgctcg gcggcgccgc cctgttcagc
      661 ggtttctatc tgaacgagct gctgatgaag cttcttgccc gccacgatcc gcatccggcg
      721 cttttcgacg cctatgccga aacgctgggc gcgctgccgc agggcaacga cgtggcggcc
      781 gaggccgcgt tgcgcgcgtt cgagctgacg cttctgaagg agatcggggt gctgccggag
      841 ctgagcctcg cgacgctgac ccagctgccg gtggatgccg agcgccgcta ctcgctgctc
      901 gccgatgtcg gggttggcga gcagcgtccc ggcgacgccg acatcgccgg cgcgacgctg
      961 atcggattgc aggcggcgct cgagcatggc agcctgccgg cgctgcagca ggcctgcgcc
     1021 gcggcgctgc ccgaactgaa gggcatcctg cgcgcccagc ttcactatca tctgggttcg
     1081 tcggttctgc gcacgcgcca ggtgatggtc gaggcgcaga acctggagcg ttgaagcgcc
     1141 gaatcctagg acgtcgatga atcccttggt caccagcggg ctcgatccgc atcgcggcgg
     1201 cacgaggctc tcggtcaatg tcaacaaggt cgccttgctg cgcaacagcc gcgcgctcga
     1261 cattccgaac ctggtgcgct tcgcgaccat cgccctcgaa gcgggagccg gaggcatcac
     1321 catccacccg cggcccgacg agcgccacat ccgggcccgc gatgtcgacg atctcgcggc
     1381 gttgatgaag gcctggccgc aggccgaatt caacatcgag ggcaacccgt tccacaacct
     1441 gatgggcttc gtcgaggccg tgcggccgca gcagtgcacc ttcgtgcccg acagcgccga
     1501 gcaggccacc tccgaccacg gctggcgcct gcccgaagac gtcgaaagac tgcgcccggt
     1561 gatcgcgacc gcgcgcgcgc tgggcgtgcg cgtcagcctt ttcatggatc cgcagcccgg
     1621 tgcgatgcgg gcggtgcgcg agatcggcgc cgaccgggtc gagctctaca ccgagagcta
     1681 cgcgcgcacc cgcggcacgc cgcgcgggcc ggaggtgctc gccggtttcg tggcggcggc
     1741 cgaggcggcc ctgcgcgagg gcctcggcgt caacgccggc cacgacctca gccgtgagaa
     1801 cctgaccgag ttcctgcgcg ccgtgcccgg tgtgcaggag gtttcgatc
//
LOCUS       DASVHM010000571         4623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_980938, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000571 DASVHM010000000
VERSION     DASVHM010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4623
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_980938"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(239..1687)
                     /locus_tag="VF308_10725"
     CDS             complement(239..1687)
                     /locus_tag="VF308_10725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013094623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
                     /protein_id="HEX7437175.1"
                     /translation="MSRFVEGQDRQQVTLLPECLDDFIAEDNPVRVVDAFVAELDLGE
                     LGFEGVRPADTGRPSYHPAVLLKIYIYGYLNRVQSSRRLERECQRNVELMWLTGRLAP
                     DFKTIADFRHDNGAGIRNVCRRFVALCRELKLFSQAAVAVDSSKFKAVNSRDRNFTPA
                     KIEKRKQQIEESIQRYLSALDTADRTMPLLEFGPRSAHLKDKLSALREQMRRMDEMKE
                     RLKAEPDEQLSLTDPDARSMMSQAKGTGLVGYNVQTAVDARHHLIVDHEVTNVGSDRA
                     QLSKMALAAREAMGKQKLQAYADRGYFSGLEIKACDEAGIKAFVPKPMTSNAKAEGRF
                     SKADFIYIKRDDEYQCPAGERAIHRFNCVEGGLMMRTYWSSACPGCAIRAQCTTSAYR
                     RIRRWEHEAVLEQMQRRLDRKPEAMTLRRSTVEHVFGTLKHWMGTAHFLTRRLEHVST
                     EMSLHVLAYNLKRVMQVLGIAKTMKAMSLVGA"
     gene            complement(1828..2763)
                     /locus_tag="VF308_10730"
     CDS             complement(1828..2763)
                     /locus_tag="VF308_10730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEX7437176.1"
                     /translation="MAVDLSPSFEVIDPRFRQLAFPNVHLEKLHTDCRWAEGPAWFAA
                     GRYLVWSDIPNDRILRWDETDGSVSVFRQPAMNTNGHTVDLQGRLVSCEHRGRCVSRT
                     EHDGGRTVLASHVDGKRLNSPNDVVVKSDGSIWFTDPSYGIDSDYEGDAAPSEVGDRR
                     VYRIAPDGRSVEPVADGFVQPNGLAFSPDESLLYVADTGATHWADGPRHIRRFRVGAD
                     GRSLCGGEVFADCASGLFDGFRVDDQGHLWTSAGDGVHCYAPEGQLLGKIRVPETVAN
                     VCFGGPKLNRLFICATTSLYSVYLNARAAARPVVA"
     gene            2984..4267
                     /locus_tag="VF308_10735"
     CDS             2984..4267
                     /locus_tag="VF308_10735"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX7437177.1"
                     /translation="MTSAAPVLVDKLLAISRALAGHVDPGAAFRATAAEIEALIPHAH
                     MDVAVLLDEGRSHACYEAGFHTSWSKLSDHPLPADCSPVRSVFRGEVPYLLAADALSD
                     PRFHFEGALDEPIFAAQLRSRIIVPMRARGGVVGTLNISRHESDCYHESDVVIAQQCA
                     DFIAPYIFALSQAEEARRAMLAESGARSREELLRVGASKLTEGMERERRRMAMDLHDQ
                     TLADLSRIARKVSSLRHDGVAGGEQLSDLEREVASCLTELRHIVDDMRPSVLELFGFR
                     DAIEAHLNRSVNGARPPIAVHIADHSGAIADRLPEMTRTTLYRIVQEAINNAVRHAAA
                     GRIDVRVGGAEGALRVVVTDDGRGCTAVDSASLGGIGHMRTRAALIGAHLRIGRVDRR
                     GGTRVAIEVGPATGADAPSGLEPASTTSGDDRCAS"
     gene            4255..>4623
                     /locus_tag="VF308_10740"
     CDS             4255..>4623
                     /locus_tag="VF308_10740"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7437178.1"
                     /translation="MRVLIAEDDGLHRAFVRTVVERLWSGEVEVIEAENGDDAIRLAA
                     RDDPPCVVLDLQLPKATGIEVARAIWGRRADTHILFWSNFADEAYVRGVARIVPPGSV
                     YGYVLKSSSEVGMETALRGVF"
BASE COUNT          717 a         1578 c         1533 g          795 t
ORIGIN      
        1 ttcaaagtac cgcggcggct gcgcatcccc gatgtggccg acggcatagc cgccggtggt
       61 gaccgtcggc aaatggccga ggctgtgtga gaacagcttc acttcagttc acgcatgatt
      121 gggtgatcgg gatacgccgt cgggcgcatt tggaacatcc agtgtgttca acgcggtcat
      181 gtgctgattt gcagcggccc aagggccgat atccgcgcgt tgaggcataa gaaggcgctc
      241 acgcgcccac caaactcatc gccttcatcg ttttggcaat gccgagcact tgcatcaccc
      301 gcttgaggtt gtaagccagc acgtgcaggc tcatctcggt gctcacatgc tcgagccttc
      361 gagtcaggaa gtgcgcggtc cccatccagt gcttgagcgt tccgaagacg tgctcgacgg
      421 tgcttcgtcg tagcgtcatc gcctcgggct tgcggtcgag ccggcgctgc atctgctcca
      481 gcactgcctc gtgctcccac ctgcggatgc gtcgatacgc tgaggtcgtg cactgcgctc
      541 tgatggcgca accagggcag gcactgctcc agtaggttcg catcatcagg ccgccttcca
      601 cgcaattgaa ccggtggatc gcgcgttcgc cggcagggca ctggtactcg tcatcgcgct
      661 tgatgtagat gaagtccgcc ttgctgaagc ggccctcggc cttggcattc gaagtcatcg
      721 gcttgggcac gaaggccttg atgcccgctt cgtcgcaggc cttgatctcg agaccgctga
      781 agtagccgcg gtcagcgtag gcctgcagtt tctgcttgcc catcgcctcg cgtgcggcca
      841 gcgccatctt gctcagctgt gcccggtcgc tgccaacgtt tgtgacctcg tgatcgacga
      901 tgaggtgatg cctggcgtcg accgcggtct gcacgttgta gcccaccagg cccgttccct
      961 tggcttgcga catcatcgag cgagcatcgg ggtcggtcag ggagagctgc tcgtcgggct
     1021 cggccttgag gcgttctttc atctcatcca tgcgacgcat ctgctcgcgc agggcgctca
     1081 gcttgtcctt cagatgcgcg gacctggggc caaactccag cagcggcatc gtgcggtcgg
     1141 cggtgtcgag tgccgacagg tagcgctgga tgctttcctc gatctgttgc ttgcgcttct
     1201 cgatcttggc gggcgtgaag ttccggtcac gactgttgac cgccttgaac ttgctgctgt
     1261 cgacagcgac agcagcctgc gagaagagct tgagctcccg gcacagcgcc acgaagcggc
     1321 ggcagacgtt gcgtatgccc gcgccgttgt catgccggaa gtccgcgatg gtcttgaagt
     1381 ccggcgccag gcgccccgtc aaccacatca gctcgacgtt gcgttggcac tcgcgttcca
     1441 gccgccggct gctctgtacc cggttcaagt acccgtagat gtagatcttc aggagcaccg
     1501 ccgggtggta cgacgggcgg cccgtgtccg ccggcctcac cccttcgaaa cccagctcgc
     1561 caagatccaa ctcggccaca aacgcgtcga ccacgcgaac cgggttgtcc tcggcgatga
     1621 agtcgtccag acactcgggc agcagcgtca cctgctgccg gtcctggcct tcaacgaatc
     1681 gcgacatatg agctccgttg ctcgatatgc ccgtcaactc tacggatcgg tgccttgcgc
     1741 ggctacgggg ttttcacaca acctcggcca caagcgggtg ctcctgagcg tcgggttccg
     1801 gcgcccgtac cttcggcccg cattcgctca ggcgacaacc ggccgcgccg cagcgcgggc
     1861 attcaggtac accgagtaga gcgaagtcgt ggcgcagatg aaaagccggt tcagcttggg
     1921 ccctccgaag cacacgttgg ccaccgtctc cggcaccctg atcttgccga ggagctggcc
     1981 ctcaggcgca tagcaatgca cgccgtcccc cgcgctcgtc cacagatggc cttggtcatc
     2041 gacgcgaaac ccgtcgaaga ggcccgaggc gcagtcggcg aagacctcgc cgccgcagag
     2101 gctgcggccg tcggcgccga cccggaagcg gcggatatgg cgcggcccgt ccgcccagtg
     2161 cgtggcgccg gtgtcggcga cgtagagcag gctctcgtcg ggcgagaacg ctaggccgtt
     2221 cggctgcacg aagccgtcgg ccactggctc gaccgagcgg ccgtccggcg cgatgcggta
     2281 gacgcggcga tcgccgacct cgctgggggc cgcgtcgcct tcgtagtcgc tgtcgatgcc
     2341 gtagctcggg tcggtgaacc agatgctgcc gtcggacttc acgaccacgt cgttcggcga
     2401 gttcaggcgc ttgccgtcga catgcgaggc gagcaccgtg cgcccgccgt cgtgctcggt
     2461 gcgcgagacg cagcggccgc ggtgctcgca cgagaccaga cggccctgca ggtcgacggt
     2521 gtggccgttg gtgttcatcg ccggctggcg aaacaccgag accgagccgt cggtctcgtc
     2581 ccagcgcagg atgcggtcgt tcgggatgtc ggaccagacc aggtaacgcc cggccgcgaa
     2641 ccatgccggt ccctcggccc atcggcagtc ggtgtgcagc ttctcgaggt gcacgttggg
     2701 gaaggccagt tgccggaagc gcggatcgat gacctcgaag ctcgggctga gatcgacagc
     2761 catgggatgc tccaatcacg tcttggaaaa agtcttcggg ggcgcgccgc tgcgaccgca
     2821 cgccgcgcag cataccgagg ttcgcgtctc gcgcgcgtcc gccagcgccg tcggcccccg
     2881 tgttgcccct tatgaacgcc gtccgcgcat cggctaggct ggccacctgc agatggcccg
     2941 ccgtggaacg accgaaaccc ccgcaagcgg agcacagcct gccgtgacca gcgccgctcc
     3001 cgtcctggtc gacaagctcc tggcgatctc gcgcgcgctg gccggccacg tcgatcccgg
     3061 cgcggcgttc cgggccacgg ccgcggaaat cgaggccctg atcccgcatg cccacatgga
     3121 tgtggcggtg ttgctcgacg aaggccgcag ccatgcctgc tacgaagcgg gcttccacac
     3181 gagctggagc aagctgtcgg atcatccgtt gcccgcggat tgcagcccgg tgcgctcggt
     3241 gttccgcggc gaggtgccgt acctcctggc cgccgacgcg ctcagcgatc cgcggtttca
     3301 cttcgagggc gccctcgacg aaccgatctt cgccgcccaa ttgcgcagcc gcatcatcgt
     3361 gccgatgcgc gctcgcggcg gggtcgtcgg caccctcaac atcagccggc acgagtccga
     3421 ctgctatcac gagtccgacg tcgtcatcgc ccagcaatgc gctgacttca tcgcccccta
     3481 catcttcgcg ctgagccagg ccgaagaggc acggcgcgcc atgctcgccg agagcggcgc
     3541 ccgcagccgc gaagagctgc tccgggtcgg agcgtcgaag ctcacagagg ggatggagcg
     3601 ggagcgccgc cgcatggcca tggatctgca cgaccagacg ctcgccgacc tgtcccggat
     3661 cgcgcgcaag gtgtcgtcgc tgcgccacga cggcgtcgcc ggtggcgagc agctctcgga
     3721 tctcgaacgc gaggtcgcga gctgcctgac cgaattgcgc cacatcgtcg acgacatgcg
     3781 gcccagcgtg ctcgagctgt tcggcttccg cgatgcgatc gaggcgcacc tgaaccgcag
     3841 cgtcaacggc gcgcggccgc cgatcgccgt ccacatcgcc gatcacagcg gagcgatcgc
     3901 cgaccgcctg ccggagatga cgcgcacgac cttgtaccgc atcgtccagg aagcgatcaa
     3961 caacgcggtg cggcacgccg ccgccggccg catcgacgtg cgcgtcgggg gggccgaggg
     4021 cgcgttgcgc gtggtcgtga ccgacgacgg tcgcggctgc acggctgtcg attccgcgtc
     4081 cctcggcggc atcggccaca tgcgcacgcg cgccgcgctg atcggtgcgc acctgcggat
     4141 cggccgcgtc gaccgccgcg gcggaacccg ggtcgcgatc gaggtcgggc cggcaaccgg
     4201 cgccgacgcc ccgtccgggt tggagccggc atcgacgaca tcgggggatg accgatgcgc
     4261 gtcctgatcg ccgaggacga cggcctgcac cgcgcattcg tccgcaccgt ggtcgaacgg
     4321 ctctggtccg gcgaggtcga ggtgatcgag gccgagaacg gcgacgatgc gatccggctt
     4381 gcggcccgtg acgacccgcc ctgcgtggtg ctcgacctgc aattgcccaa ggcgacgggc
     4441 atcgaggtcg ccagggccat ctgggggcgc cgcgccgaca cccacatcct cttctggtcg
     4501 aacttcgccg acgaagccta tgtgcgcggc gtggcgcgca tcgtaccgcc cggctcggtc
     4561 tacggctatg tgctcaagtc gtcgtccgag gtggggatgg agacggcgct gcgcggcgtt
     4621 ttc
//
LOCUS       DASVHM010000572         4148 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1124801, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000572 DASVHM010000000
VERSION     DASVHM010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4148
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1124801"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..1244
                     /locus_tag="VF308_10745"
     CDS             6..1244
                     /locus_tag="VF308_10745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009461958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7437179.1"
                     /translation="MDSPPLNSPRSANATPAPWRALPTGIWALGFASLFMDISSELIH
                     SLLPVFMVTTLGASMVTVGIVEGVAEATAAILKVFSGALSDYLGKRKVLMVVGYALAA
                     FTKLIFPLATSIGWVFTARFVDRVGKGIRDAPRDALVADLAPPQMRGAAYGLRQALDS
                     VGALIGPLLAVALMLWFADDVRTAMWFAVVPAFITVALLLVYVREPERANADGAPKAP
                     LTVADAKRLPLRYWLVVAVGAVFTLARFSEAFLLLRAQDVGVEMGYVPVVMVVMSLFY
                     AVAAYPAGAAADRGSQRTLLLLGLALLIAADLVLASAASPLIVFAGAALWGLHMALTQ
                     GLLSKLVADTAPAELLGTGFGLFNLASGGALLLASVIAGLLWSSFGASATFLAGAVFA
                     AVAAIGLLAAGRLHGPRLPA"
     gene            1377..1979
                     /locus_tag="VF308_10750"
     CDS             1377..1979
                     /locus_tag="VF308_10750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437180.1"
                     /translation="MDDRSGLAEERASLRERLLDVPWDVPRAVWYGRLAALALVAIWG
                     TSVLLGRMTDPPTLLHLTVILFHEAGHVFFMPFGEALRVAGGTLGQLLMPLICAVALH
                     RRGDNFGAAICLAWMGMSLMDASVYAYDAADPVLPLIGGGTGSDSFHDFVFLFDRYGQ
                     LGHARGWARAMKALGAIGVFASLAWAAVLLFLQSEHLAER"
     gene            2083..2667
                     /locus_tag="VF308_10755"
     CDS             2083..2667
                     /locus_tag="VF308_10755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009665971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX7437181.1"
                     /translation="MDKRHFLLAGALGAVGSPRLAAAPSSARTGTGLLTLSGAIARSN
                     RGPLDPALDQLLVKHGRTFDKAWDFDAAMLARLPAVTIQPTLEYDAKPHRLSGPLLAS
                     VVGAAGVAASAPVALTLRAIDGYAVAVSLADANRYRMIVATTLDGTAMSLGGLGPLWA
                     VYDADRIADFADKPLKQRFALCPWGLYHIEVKTV"
     gene            2756..3103
                     /locus_tag="VF308_10760"
     CDS             2756..3103
                     /locus_tag="VF308_10760"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX7437182.1"
                     /translation="MRGGLHTSTIGLIAAAIAAGTGPAICHGRLDGRHELLGHRHQPE
                     LDSEPARRCRRCRHQRRRRPDEHLPTPRGDVVGVAAVPEPETYVLMLAGLLALGRVAQ
                     RRRHRREVSRMTA"
     gene            complement(3120..3881)
                     /gene="fliR"
                     /locus_tag="VF308_10765"
     CDS             complement(3120..3881)
                     /gene="fliR"
                     /locus_tag="VF308_10765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HEX7437183.1"
                     /translation="MLTFTEADVLAWVTPILWPFLRVLALFSALPVIAQRSVPMRLRI
                     GLAFLVAFCAQASIPAMAPVALDSAAGMTAVLQQVLVGVSLGFSVRIVFAAIEFAGEL
                     IGLQMGLNFASFFNPMSGGEETAVSRFFGVSISWLFIVSGGHLLVIAAVVQSFTAFPV
                     TGDPFAFLRTVEPQRWGAEIFSLGLWLALPLIAMLLFTNLVLGVITRVAQQMNIFAIG
                     FPITLGVGLVGVLLTLPLMEMPFTMALERMLAQFQ"
     gene            complement(3888..>4148)
                     /gene="fliQ"
                     /locus_tag="VF308_10770"
     CDS             complement(3888..>4148)
                     /gene="fliQ"
                     /locus_tag="VF308_10770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011806883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEX7437184.1"
                     /translation="QQVFTFGQQSLYMLLMISAPILLTVLAVGLVVSIFQAATQIHEA
                     TLSFVPKIVAAVAVLAIAGPWMLTSLVEFLQRTLQSIPTVVG"
BASE COUNT          616 a         1404 c         1448 g          680 t
ORIGIN      
        1 cgcacatgga ctctccccct ttgaatagcc cccggtccgc caacgcgacg ccggcgccat
       61 ggcgggccct gcccacgggc atctgggcct tggggttcgc ttcgctgttc atggacatct
      121 cgtcggagct gatccacagc ctgttgccgg tattcatggt cacgaccctg ggcgcttcca
      181 tggtcacggt cggcatcgtc gagggcgtgg ccgaagccac cgccgccatc ttgaaggtgt
      241 tctcgggcgc gctcagcgac tacctcggca aacgcaaggt cttgatggtt gtcggctatg
      301 cgctcgctgc gttcaccaaa ctgatcttcc cgctggccac ttcgatcggc tgggtcttca
      361 cggcacgttt tgtcgaccgc gttggcaaag gcatccgcga tgcgccgcgc gacgcgctgg
      421 tggccgacct cgcgccgccg cagatgcgag gcgcggccta cggacttcgc caggcgctcg
      481 actcggtggg tgcgttgatc ggcccgttgc tggcggtggc gctcatgctc tggtttgccg
      541 acgatgtcag aacggcaatg tggttcgcgg tcgtgccggc tttcatcacg gtggcattgc
      601 tgcttgtcta tgtgcgcgaa cccgagcggg cgaatgcgga cggcgcgccc aaggcaccgc
      661 tcaccgttgc cgatgccaag cgccttccgt tgcgttactg gctcgtcgta gcggtgggag
      721 ctgtctttac gctggcgcgc ttcagcgaag cgtttctgct gttgcgcgcc caggacgtcg
      781 gggtcgagat gggctacgtc ccagtcgtga tggtcgtgat gagcctcttc tacgccgtgg
      841 ccgcctatcc cgccggggcc gccgccgacc gcggcagcca gcgcacattg ttgcttctcg
      901 ggctggctct gttgatcgct gcggacctcg tgcttgcctc tgccgcatcg ccgctgatcg
      961 tgttcgctgg cgcggcgttg tggggcttgc acatggctct tacccaaggc ctgctgtcga
     1021 aactcgtcgc ggacaccgcg cccgcagagt tgctcggcac gggtttcgga ctgttcaatc
     1081 ttgccagtgg cggcgcgctg ctgctggcga gtgtcatcgc gggcttgcta tggagctctt
     1141 tcggagcgtc ggccacgttt ctcgccggtg ccgtgttcgc ggccgtggca gccatcggct
     1201 tgctggccgc cggacgactc cacgggccgc gactgccagc ctgatggcgc gagcggggag
     1261 gtcttgggga ggaagccggg gcgaatccgc ccacttcgtg tcctggtcga cgcaatcgcg
     1321 atcggcgcgc ccgcgccgac gcgcccgcac cgggcgtcgg agcgatcatc gtcgcggtgg
     1381 acgatcgatc cgggctcgcc gaggaacgcg cctcgctgcg cgagcgtctc ctcgacgtgc
     1441 cgtgggacgt gccgcgggcc gtctggtacg ggcgcctcgc cgcgctcgcc ctcgtcgcga
     1501 tctggggcac gagcgtcctg ctcggccgga tgaccgaccc gccgacgctg cttcatctca
     1561 cggtgatcct cttccacgag gccggccacg tgttcttcat gccgttcggc gaagcgctgc
     1621 gcgtcgctgg cggcacgctc ggccagctgc tgatgccgtt gatctgcgct gttgcgctgc
     1681 atcgccgcgg cgacaacttc ggcgccgcga tctgcctcgc ctggatgggc atgagcctga
     1741 tggacgcgtc ggtgtacgcc tacgacgccg ccgatccggt gctgcccctg atcgggggcg
     1801 gcaccggcag cgacagcttt cacgacttcg tcttcctgtt cgaccgctac ggccagctcg
     1861 gccatgcgcg cggctgggcc cgggcgatga aggcgctcgg cgcgatcggc gtcttcgcgt
     1921 cgctcgcctg ggcggcggtg ctgctctttc tgcaaagcga gcatctcgcc gagcgatagg
     1981 cgaccgccgt accgagcggt tgacaagcgc gtgccgtatg agacagtgaa ccgcgactcc
     2041 cggcgctgcc acgccacccc cccggtccga ggaggccctc gcatggacaa gcgtcacttt
     2101 cttcttgccg gcgccctcgg agcggtcggg tcgccgcggc tggctgcggc gccgtcgagt
     2161 gctcgcacgg gcaccggcct cctgaccctc agcggagcga ttgcgcgcag caaccgcggc
     2221 ccgctcgacc cggcgctgga ccagctgctg gtcaagcacg ggcgaacgtt cgacaaggcg
     2281 tgggatttcg acgccgccat gctggcgcgg ctgccggccg tgacgatcca gccgactctc
     2341 gagtacgacg ccaagccgca caggctgagc ggcccgctgc tcgcctcggt ggtcggtgcc
     2401 gccggcgttg ccgcgagcgc gcccgtcgcg ctgacgctgc gcgcgatcga cggctacgcc
     2461 gtggcggtga gcctggccga cgcgaatcgc tatcgaatga tcgtggcgac gacgctcgac
     2521 ggcacggcga tgagcctcgg tggcctgggc ccgctctggg ccgtgtacga cgccgaccgg
     2581 atcgccgact tcgcggacaa gcccctcaag cagcgcttcg cgctgtgtcc ctggggcctg
     2641 taccacatcg aggtgaagac cgtctgagcc gaagccttcc gacagcggtc acgcggcgtg
     2701 cctgccgtgg gcgccaagcg cgagccggga gatcgtcggg gcgaggaggg tgatcatgcg
     2761 cggagggttg cacacgtcga cgatcggctt gatcgccgcc gccatcgccg ccggaacggg
     2821 gccggcgatc tgccacggtc gactggacgg gcggcacgag ctgctgggac atcgtcacca
     2881 accggagctc gactccgagc ctgcccggcg ctgccgacga tgtcgtcatc aacgtcgccg
     2941 gcgtccagac gagcacttac cgacgccgcg cggcgacgtc gtcggcgtgg ctgccgtgcc
     3001 ggagcctgag acctacgtcc tgatgcttgc cggcttgctg gcgctcggac gcgtcgcaca
     3061 gcgacgccga caccgccgcg aggtgtcacg aatgacggcc tgagccgtcg cctgccgcgt
     3121 cactggaact gggccagcat ccgttccagc gccatcgtga acggcatttc catcagcggc
     3181 agcgtcagca gcacgccgac caggccgacg ccgagcgtga tcggaaagcc gatcgcgaag
     3241 atgttcatct gctgcgcgac gcgcgtgatg acgccgagga cgaggttggt gaagagcagc
     3301 atcgcgatca gcggcagcgc gagccacaac cccaggctga agatctcggc gccccagcgc
     3361 tgcggctcga cggtgcgcag gaaggcgaaa gggtcgcccg tgaccggaaa cgcggtgaag
     3421 ctctggacga cggcggcgat gacgagcagg tgaccgccgc tgacgatgaa gagccacgag
     3481 atcgagacgc cgaagaagcg gctcaccgcg gtctcctcgc cgccgctcat cgggttgaag
     3541 aacgaggcga agttcaggcc catctgcagg ccgatcagct cgcccgcgaa ctcgatcgcg
     3601 gcgaagacga ttcgcaccga gaagccgagc gagacgccga ccagcacctg ctgcaggacg
     3661 gccgtcatgc ccgcggccga atcgagggcg accggggcca tcgccgggat cgacgcctgc
     3721 gcgcagaacg cgacgagaaa ggcgaggccg atgcgaaggc gcatcggcac gctgcgctgg
     3781 gcgatcaccg gcagcgcgct gaagagggcg aggacgcgca ggaacggcca gaggatcggc
     3841 gtcacccagg cgaggacatc ggcctcggtg aaggtgagca tgaccgtcta gccgacgacg
     3901 gtcgggatcg actggagcgt gcgctgcagg aactcgacca gcgaggtcag catccacggc
     3961 ccggcgatcg ccagcaccgc gaccgcggcg acgatcttcg gcacgaacga aagcgtcgcc
     4021 tcgtggatct gcgtcgccgc ctggaagatg ctgacgacga ggccgaccgc gagcaccgtg
     4081 agcaggatcg gcgccgagat catgagcagc atgtagaggc tctgctggcc gaaggtgaag
     4141 acctgttg
//
LOCUS       DASVHM010000573         2347 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_473795, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000573 DASVHM010000000
VERSION     DASVHM010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473795"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2292)
                     /locus_tag="VF308_10775"
     CDS             complement(<1..2292)
                     /locus_tag="VF308_10775"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017876212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HEX7437185.1"
                     /translation="MTLDRAEANYVVGVRALCEFTAKQGNLDLRFTPSPSAQEGVAGH
                     GVVARRRAAGYQAEVSLSGSVEGLTVRGRADGFERAENRLEEVKTYRGDLERMPANHR
                     HLHWAQAKVYGWLLCQQFELAKIDIALIYFDVSSQSETTFVETHAAAALRAFFEDRCE
                     RFLAWSQQELAHAAARKAWLAALRFPHPDFRAGQRALSEGVWRAASGGRCLVAQAPTG
                     IGKTIGTVFPLLKAWPAQAFDKIFFLTAKGSGRRLALGALERLRAGETAPRLRVLELV
                     ARDKACEHPDKACHGESCPLAKGFYDRLPGARAQALADPFLDQAALRTVALEHAVCPY
                     YLGQELVRWADVVVGDYNHYFDLHAILFGLTVANEWRVGVLVDEAHNLLERARRMYSA
                     ELDRSALKTLRRDAPAAVAKALAGLGRRWSELHKDQAGAYETYPAVPARFAMALQKVT
                     GAIADHLAEDPAGGDSALLAFHFDALHFLRVLELFGDHTLFDVTLAHPAGPRRGCAHS
                     ALTLRNIFPAPHLKARFAAAHSSVLFSATLTPMHFHRDTLGLPDDAAWLDVESPFAAE
                     QLTIRIASHVSTRFRHRDASLEPIVELIARQFTAAPGNYLAFFSSFDYLQQVSARFAQ
                     RHPDLPAWTQSRAMAAGERDAFLARFTDEGRGIGFAVLGGSFGEAIDLPGKRLIGAFV
                     ATLGLPPLNPVNENIRRRMEAEFGAGYDYTYLYPGIQKVVQAVGRVIRSQDDAGVVHL
                     IDDRFERAEVRRLFPRWWKIAPAS"
BASE COUNT          357 a          777 c          868 g          345 t
ORIGIN      
        1 ggatgccggc gcgatcttcc accagcgcgg gaagagcctg cgcacttcgg cgcgctcgaa
       61 gcggtcgtcg atgaggtgga ccacgcccgc gtcatcctgg ctgcggatca cgcggccgac
      121 ggcctgcacc accttctgga tgcccggata gaggtaggtg tagtcgtagc ccgcgccgaa
      181 ctcggcctcc atgcggcgcc ggatgttctc gttgaccgga ttcaacggtg gcaggccgag
      241 cgtcgcgacg aatgcgccga tcaggcgctt gcccggcagg tcaatggctt cgccgaacga
      301 accgccgagc accgcgaacc cgatgccgcg cccttcgtcg gtgaagcggg cgaggaacgc
      361 gtcgcgctcg cccgccgcca tggcgcgcga ctgggtccag gccggcaggt cggggtggcg
      421 ctgcgcgaac cgggccgaga cctgttgcag gtagtcgaag ctgctgaaga acgcgaggta
      481 gtttccgggt gcggcggtga actggcgtgc gatcagctcg acgatcggct cgagcgacgc
      541 gtcgcgatgc cgaaagcgcg tcgagacatg gctcgcgatg cggatcgtca actgctcggc
      601 ggcgaatggc gactcgacgt cgagccaggc ggcgtcgtcg ggcaggccga gcgtgtcgcg
      661 atggaaatgc atcggcgtca aggtcgccga gaacagcacg ctcgaatgcg ccgcggcaaa
      721 gcgcgccttc aggtgcggcg ccgggaagat gttgcgcaga gtcagagccg agtgggcgca
      781 cccgcgccgc gggccggcgg ggtgtgcgag cgtgacgtcg aagagggtgt gatcgccgaa
      841 gagctcgagg acgcgcagga aatgcagcgc atcgaagtgg aaggcgagca gcgcgctgtc
      901 gccgcccgcc gggtcttcgg cgagatggtc ggcgatggca ccggtcacct tctgcagcgc
      961 catggcgaaa cgggccggca ccgccggata ggtctcgtac gccccggctt ggtccttgtg
     1021 caactcgctc cagcgccggc cgaggcctgc gagcgccttc gcgacggccg ccggcgcgtc
     1081 acggcgcaag gttttgagcg ccgagcggtc cagctcggcg ctgtacatcc ggcgcgcccg
     1141 ctcgagcagg ttgtgggcct cgtcgacgag cacgccgacg cgccattcgt tcgcgaccgt
     1201 cagcccgaac aggatcgcgt gcaggtcgaa gtagtggttg tagtcgccga cgacgacgtc
     1261 ggcccagcgc accagttcct ggcccaggta gtacgggcag acggcgtgct cgagtgccac
     1321 cgtgcgcagt gccgcctggt cgagaaaggg gtcggcgagc gcctgcgcgc gcgcgcccgg
     1381 caggcggtcg tagaagccct tcgccaatgg gcacgactcg ccgtggcagg ccttgtcggg
     1441 gtgctcgcag gccttgtcgc gcgccaccag ttcgagcacg cgtaggcgcg gcgccgtttc
     1501 gcccgcgcgc aggcgttcga gcgcgccgag cgcgagccgg cgaccggagc ccttggcggt
     1561 gaggaagaag atcttgtcga acgcctgggc cggccaggcc ttgagcagcg gaaagaccgt
     1621 gccgatcgtc ttgccgatcc cggtcggcgc ctgggccacg aggcagcgtc cgccgctggc
     1681 ggcgcgccac acgccttccg acagcgcgcg ctgtccggcg cgaaagtccg gatgcggaaa
     1741 gcgcagcgcg gcgagccagg ccttgcgcgc cgccgcgtgc gcgagttcct gctggctcca
     1801 ggcgaggaag cgttcgcacc ggtcctcgaa gaaggcgcgc agcgcggcgg ccgcgtgggt
     1861 ttcgacgaac gtcgtctcgc tctggctcga gacgtcgaag tagatcagcg cgatgtcgat
     1921 cttcgccagt tcgaactgct ggcacagcag ccagccatag accttcgcct gggcccagtg
     1981 caaatggcgg tggttggcgg gcatgcgctc gagatcgccg cgataggtct tgacctcttc
     2041 gagccggttc tccgcgcgtt cgaagccatc ggcgcggccg cgcaccgtga ggccctcgac
     2101 gctgccgctg aggctcacct cggcttggta gccggccgcc cggcgccgcg cgaccacgcc
     2161 gtgcccggcc acgccttcct gcgccgaggg cgaaggtgtg aagcgcaggt cgaggttgcc
     2221 ttgcttggcg gtgaactcgc acaacgcgcg cacaccgacg acgtagttcg cctcggcccg
     2281 atcgagtgtc atggagcgtt ccggggagca tcttgcgggt ccgccgaggc gagttcgcgc
     2341 cagacgg
//
LOCUS       DASVHM010000574         3393 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_619572, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000574 DASVHM010000000
VERSION     DASVHM010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3393
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_619572"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..1236)
                     /locus_tag="VF308_10780"
     CDS             complement(19..1236)
                     /locus_tag="VF308_10780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HEX7437186.1"
                     /translation="MTIRLRDPVERLVQTLQRWPYLDTVATLRQRFREDRLGLTAGSL
                     TFTTLISLVPLVTVMLAAFAAFPMFATFQEALQKYFLQSLVPDSIARPVLDALTQFSS
                     KASRLGTVGLVALLGSALALMLTIDRTLNAIWRVRTPRPIAQRVLVYWAAATLGPLLL
                     GISLSLTSYAISASRGIVGALPGGVGLLLGTVEFALLTVGMAGLFHHVPNTHVRWRHA
                     LAGGVFVAVGFEAAKRLLALYLVQVPTYAMVYGAFATVPIFLVWIYLSWVIVLLGAVI
                     AAYAPSLQMRAVRWPGGPGSGFQLALAVLRELARVRSQGRKGLSNAELSETLRTDPLQ
                     TDPILESLAALDWVGRLEEKGDARYVLLCDPERTPAEPLIAMLLIEPMSGLRAFWQRA
                     GFADMTVQDLSAQ"
     gene            1293..1664
                     /locus_tag="VF308_10785"
     CDS             1293..1664
                     /locus_tag="VF308_10785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2069 domain-containing protein"
                     /protein_id="HEX7437187.1"
                     /translation="MKATNALPGSRTRAVALASILALIALGLAWELWLAPTGQRTLAL
                     KVLPLVLPLPGLIRNRLYTYRWLSLLVWLYVAEGVVRAAGDRGAGGVLAAIEIGLSLL
                     LFGACATHVRMRLRAARKASA"
     gene            1661..3061
                     /locus_tag="VF308_10790"
     CDS             1661..3061
                     /locus_tag="VF308_10790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX7437188.1"
                     /translation="MSLIESLRAVVGASAVLTDGDLSAYEVDWRKRHRGRAAAIVRPA
                     STAQVAAVLKTCAAHRAPVVTQGGNTGLVGASVPDESGTQVLLNLTRMNRVRAIDAAN
                     LTITVDAGCVLQAVQEAAAGSGLLFPLSLAAEGSCTIGGNLATNAGGTQVLRFGNARD
                     LCLGLEVVTAQGEVWDGLCGLRKDNTGYDLRDLFIGSEGTLGVITGATLKLYPQPAAM
                     TTALCSLGGLDAAVELLQLAQTRLGASLTGFEVMNEFSLALVARHFPALRRPLGPAPW
                     TVLLEQSDAEGPEHAAALFEGLLALALERGLVTDAALAANLEQSKAMWHLRESIPLAQ
                     GLEGANIKHDISLPVSAIAGFVASTDAALQHAFAGVRLVDFGHLGDGNLHYNVQAPEG
                     MAAPEFVAGFEGRVNALVYDAVAACGGSFSAEHGIGRLKRDELARRKSPVALRMMHAI
                     KHALDPENLLNPGRVL"
     gene            complement(3009..>3393)
                     /locus_tag="VF308_10795"
     CDS             complement(3009..>3393)
                     /locus_tag="VF308_10795"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEX7437189.1"
                     /translation="TWLRALKLETLAPASVLHFSMYDQMIQASLAGQGVALGRSPLID
                     SLLRQKKLVAPFKQTLASPRSYYLIESAAAARKPEVQAFVDWLRREALAEASTAQAEV
                     RSAAGVVAPRERGPGSAGSRGRARA"
BASE COUNT          517 a         1188 c         1197 g          491 t
ORIGIN      
        1 ccggggctac cggcatgctt actgcgcgct caggtcctgc acggtcatgt cggcgaagcc
       61 ggcgcgttgc cagaatgcgc gcaggcccga catcggctcg atcaggagca tcgcgatgag
      121 cggctcggcg ggtgtacgtt ccgggtcgca gagcaagacg tagcgcgcgt cgcctttctc
      181 ctcgaggcgg ccgacccagt cgagcgcggc gagcgattcg aggatcggat cggtctgcag
      241 cggatcggtg cgcaaggttt ccgaaagctc cgcgttgctc aggcccttgc gaccctgcga
      301 ccgcacccgc gccagctcgc gcagcacggc cagagccagt tgaaagcccg aacccggccc
      361 gccgggccag cgcacggccc gcatctgcag gctcggcgcg tacgcggcga tcaccgcacc
      421 gagcagcacg atgacccagc tcaggtagat ccagaccagg aagatcggta cggtcgcgaa
      481 agccccgtag accatcgcgt aggtcggcac ctgcaccagg tacagtgcga gcagccgctt
      541 ggcggcctcg aagccgacgg cgacgaagac gccgccggcg agcgcgtggc gccagcgcac
      601 atgggtgttg ggcacatgat ggaagagccc cgccatgccg accgtcagga gcgcgaactc
      661 gaccgtgccg agcagcaggc cgacgccgcc gggcagcgcg ccgacgatgc ccctcgaggc
      721 cgagatcgcg tacgaggtca ggctgaggct gatgcccagc aggagcgggc cgagtgtcgc
      781 cgcggcccag tacacgagca cgcgctgcgc gatcggccgg ggcgtgcgca cgcgccagat
      841 cgcgttgagc gtccggtcga tcgtcagcat cagcgcaagc gcgctgccca gcagtgccac
      901 caggccgacc gtgccgaggc ggctggcctt gctcgagaac tgcgtcaggg cgtccagcac
      961 gggccgggcg atgctgtccg gcacgaggct ttgcagaaag tacttctgca gcgcttcctg
     1021 gaaggtcgcg aacatcggaa aggcggcgaa ggcggcgagc atcaccgtga ccagcggcac
     1081 gagcgagatc agcgtcgtga aggtcagact gccggcggtg aggccaaggc ggtcttcgcg
     1141 gaagcgctgg cgcagcgtcg cgacggtatc gaggtagggc cagcgttgca gcgtctggac
     1201 cagacgctcc acggggtcgc gcaaccggat ggtcaccctc tccgcggtcg tgggaggggt
     1261 cggggaatcc atagctggca tcatagtcag cgatgaaagc gacgaacgcc ctgcccggct
     1321 cgcgcacccg cgccgtggcg ctcgcgagca tcctcgcgct gatcgcgctc gggctggcgt
     1381 gggagttgtg gctcgccccg accggccagc gaactctcgc cctgaaggtg ctcccgctcg
     1441 tcctgccgct gcccgggctg atccgcaatc gcctctacac ctatcgctgg ctgagcctcc
     1501 tggtctggct ctacgtcgcc gaaggggtgg ttcgcgccgc cggcgaccgc ggtgcgggcg
     1561 gcgtcctcgc ggcgatcgag atcgggctct ccctgctgct cttcggggcc tgcgcgacgc
     1621 atgtgcggat gcgcctgcgc gccgcgcgga aggcgtccgc gtgagcctga tcgaaagcct
     1681 gcgcgcagtc gtcggtgcgt ccgcggtgct gaccgacggc gacctctcgg cctacgaggt
     1741 cgactggcgc aagcgccatc gcggccgggc cgccgctatc gtgcgcccgg cctcgaccgc
     1801 gcaagtcgcc gccgtcttga agacctgcgc cgcgcaccgc gcgccggtcg tgacccaggg
     1861 cggcaacacc gggctcgtcg gcgcctcggt gcccgacgag agcggcacgc aggtgctcct
     1921 caacctgacg cggatgaacc gcgtccgcgc gatcgacgcg gccaacctga cgatcacggt
     1981 cgacgcgggc tgcgtgctcc aggcggtgca ggaagcggcg gccgggagtg ggctgctgtt
     2041 tccgctgagc ctggccgccg aaggcagctg cacgatcggc ggcaacctcg cgaccaacgc
     2101 cggcggcacg caggtgctgc gcttcggcaa cgcgcgcgac ctgtgcctcg ggctcgaggt
     2161 cgtcacggcc caaggcgagg tctgggacgg tctttgcgga ctgcgcaagg acaacacggg
     2221 ctacgacctg cgcgatctct tcatcggcag cgaaggcacc ctcggcgtga tcaccggcgc
     2281 gaccttgaag ctctacccgc agccggccgc catgacgacc gcactctgca gcctgggcgg
     2341 cctggacgcg gcggtcgagc tgctgcaact cgctcagacg cgcctcggcg cgagcctgac
     2401 cggcttcgag gtgatgaacg agttctcgct ggcgctggtc gccaggcact ttccggcgtt
     2461 gcgccggcct cttgggcccg cgccgtggac cgtgctgctc gagcagtcgg atgccgaagg
     2521 gcccgagcac gccgccgcgc tgttcgaggg cctgctcgcc ctcgcgcttg agcgcggcct
     2581 ggtcaccgat gcggcgttgg ccgcgaacct cgaacaatcg aaggcgatgt ggcacctgcg
     2641 cgaatcgatc ccgctcgccc aaggcctcga aggcgcgaac atcaagcacg acatctcgct
     2701 gccggtttcg gcgatcgccg gcttcgtcgc ctcgaccgac gcggcgctgc agcacgcctt
     2761 tgccggggtc cgcctcgtcg acttcggtca tctcggcgac ggcaacctgc actacaacgt
     2821 gcaggcgccg gaaggcatgg cggcgcccga gttcgtcgcc ggcttcgagg gccgcgtcaa
     2881 cgcgcttgtc tacgacgccg tcgcggcatg cgggggttcg ttctcggccg aacatggcat
     2941 cggccggctc aagcgcgacg aactggcgcg acgcaagtca ccggtcgcgc tgcggatgat
     3001 gcacgccatc aagcacgcgc tcgaccccga gaacctgctg aacccgggcc gcgttctcta
     3061 ggggcgacca cgcctgcggc gcttcgcact tcggcttgcg ctgtcgaggc ctccgcgagc
     3121 gcctcgcggc gcagccagtc gacgaaggcc tggacttcgg gttttcgcgc agccgcggcc
     3181 gactcgatca ggtagtagct gcgcggcgag gccagcgtct gcttgaaagg cgcgaccagc
     3241 ttcttctggc gcagcaggct gtcgatcagc gggctgcgcc ccagcgccac gccctggccc
     3301 gccaggctgg cctggatcat ctggtcgtac atcgagaagt ggagcacgct cgccggggcc
     3361 agggtctcga gcttcaaggc gcgcagccac gtc
//
LOCUS       DASVHM010000575         3088 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_114156, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000575 DASVHM010000000
VERSION     DASVHM010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3088
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114156"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..976)
                     /locus_tag="VF308_10800"
     CDS             complement(5..976)
                     /locus_tag="VF308_10800"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437190.1"
                     /translation="MLKRRQFVEAVSGSVLAVTCGGAIAQSRKMPRVGILLFNSPSSE
                     PLGPLLDGLKEAGYVVDRTLAVDYRYAEGRQERLPALAVELVQLNPDVIFLVGGDVAP
                     YAKAATTTIPIVVVVSNDPVKAGLVANIGRPGGNVTGITLIYDELAGKTLGFLKEAAP
                     SMTRVAVLWNPEHADPEFQETKRAADLLKVRLQSLEVRRPEDFVAAFKAALAERAEGL
                     VIVSSRLMSRERPRIIEFAAKNQILIAGGWGEWTRDGALLTYGPNTVELMQRAAVFIT
                     KIIKGARPADLPMERPTRFELVINLNTARTFGLTLPPNLLARADRVV"
     gene            1089..2036
                     /locus_tag="VF308_10805"
     CDS             1089..2036
                     /locus_tag="VF308_10805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437191.1"
                     /translation="MPNAQDAFWFKSQFQPAIERAIAGTPFSVDMITAFACQETGEIW
                     PALRRQGLPTSRILELCVGDTIDASPTGGGRRAFPKNKAELLQAPQGDRMFDIARQGL
                     VDMASYIPAYRGAAARPDKFCHGFGIFQLDLQFFKTEPDYFLSRRYADFDAALAKCIG
                     ELKAALKRVGWQAKTSLSDAEMAGVAIAYNTGRYDPAKGLKQGYFDGAKYYGENYFAY
                     LQLAKGVRFPAAEAVPSRGARALPAKGKAKPVRLAQLKKAKAGGAAKPTEAAKAKPSK
                     AAKAPKAAKASKAPKPAKATKATKSVSAANTAKKAARRR"
     gene            complement(2046..2612)
                     /locus_tag="VF308_10810"
     CDS             complement(2046..2612)
                     /locus_tag="VF308_10810"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006575456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEX7437192.1"
                     /translation="MASTRRVAVVVGSLRKDSFNRKMAKALAAMAPAPLSLEIVEIGQ
                     LPLYNQDDDATPPAASVAFKEKIAGADAVLFVTPEYNRSVPGVLKNAIDVGSRPYGKS
                     AWKGKPAAVMTVSPGAMGGFGANHHLRQSLVFLDMPVLQQPEAYVGSAGDLFDDAGGL
                     KKPETQQFLAKFLAAFAAWIERTAKTPA"
     gene            2692..>3088
                     /locus_tag="VF308_10815"
     CDS             2692..>3088
                     /locus_tag="VF308_10815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HEX7437193.1"
                     /translation="MNKAFTREVDREDDEDDDVEAAVLPQGAKNYITVAGYRRLREEL
                     MTLLDDERPKVVEAVSWAAKNGDRSENGDYLYGKKRLREIDRRIRFLTKRLDLAEVVD
                     PSRHHGNEQVFFGATVRYASDHGEERTIRI"
BASE COUNT          544 a         1022 c         1047 g          475 t
ORIGIN      
        1 tctttcagac gacccggtcg gcacgcgcaa ggaggttcgg cggcaacgtc aggccgaacg
       61 tgcgtgcggt gttgaggttg atcaccagct cgaaccgcgt cgggcgctcc atcggcagat
      121 cggcgggtcg ggcccctttg atgatcttgg tgatgaagac ggccgcgcgc tgcatgagct
      181 cgacggtgtt cggaccatag gtcaagaggg cgccgtcccg ggtccactcg ccccagccgc
      241 cggcgatcag aatctggttc ttggccgcga attcgatgat gcgtgggcgc tcgcgcgaca
      301 tcagcctcga cgacacgatc accaaccctt cggcccgctc ggcgagggcg gccttgaagg
      361 ccgcgacgaa gtcctccggc cgacggacct cgagcgactg gagcctgacc ttcaggaggt
      421 cggcggcgcg cttggtctcc tggaactccg ggtcggcatg ctcgggattc cacaggacgg
      481 cgacgcgcgt catcgaaggc gccgcttcct tcaggaagcc gagcgtcttg ccggcgagct
      541 cgtcgtagat cagcgtgatc ccggtgacat tgccgcccgg cctgccgatg ttcgccacca
      601 gcccggcctt gacgggatcg ttgctgacca cgacgacgat cgggatcgtc gtcgtcgcgg
      661 ccttggcgta gggcgcgacg tcgccgccca ccaagaagat cacatcgggg ttgagctgca
      721 ccagctcgac ggcgagcgcg gggaggcgct cctgccggcc ttcggcatag cggtagtcga
      781 ccgccagcgt cctgtcgacg acgtatccgg cctctttgag accgtcgagc agcgggccga
      841 ggggctccga ggacggggag ttgaagagca ggatgccgac gcgcggcatc ttgcgcgact
      901 gcgcgatcgc gccgccgcac gttacggcca gcacggaccc tgagacggct tcgacgaact
      961 gccgtcgctt cagcatcgcg tgggcctcat gggtgcagag cttacgtgac aaggggcacc
     1021 gcgacgctta acatttttcg gttcgtgcgg ctaggctgca ccgtttcacc cagcagagga
     1081 aatgcgacat gcccaacgcc caggatgcgt tctggttcaa gagccagttc cagcccgcga
     1141 tcgaaagagc catcgccgga acgccgttca gcgtcgacat gatcaccgcg ttcgcttgtc
     1201 aggaaaccgg cgagatctgg ccggcgctgc gccgccaggg gctgccgacc tcgcgcattc
     1261 tcgagctctg cgtcggcgac acgatcgacg cctcgcctac gggcggcggg cggcgcgcct
     1321 tcccgaagaa caaggccgag ctgcttcagg cgccgcaggg cgatcgcatg ttcgacatcg
     1381 cgcgccaggg cctggtcgac atggcgagct acatcccggc ctaccgcggc gcggcggctc
     1441 ggcccgacaa gttctgtcat ggcttcggga tcttccagct cgacctgcag ttcttcaaga
     1501 ccgagcccga ctacttcctc tcgcgtcgct acgccgactt cgatgccgcg ctcgccaagt
     1561 gcatcggcga gctgaaggca gcgctgaagc gggtcggctg gcaggcgaag acctccctca
     1621 gcgatgccga gatggccggc gtcgcgatcg cctacaacac cggccgctac gacccggcca
     1681 agggcctgaa gcagggctac ttcgacggcg cgaagtacta cggtgagaac tacttcgcct
     1741 acctgcagct cgccaagggc gtccgctttc ctgcggccga ggccgtcccg tcacgcggcg
     1801 cgcgagccct gccggcgaag gggaaggcca agccggtcag gcttgcgcag ctgaagaagg
     1861 ccaaggccgg cggcgccgcg aagcccaccg aggccgcgaa agcgaagcca tcgaaggccg
     1921 cgaaagcacc gaaggcggca aaagcatcga aggccccgaa gccagcgaaa gcgacgaagg
     1981 cgacgaagtc tgtgagcgcc gcgaacacgg cgaagaaggc cgcaaggcga cgctgaccgg
     2041 ctgcctcagg ccggcgtctt cgccgtccgc tcgatccagg ccgcgaacgc ggcgaggaac
     2101 ttggcgagga attgctgcgt ctccggtttc ttgaggccgc cggcgtcgtc gaacagatcg
     2161 cctgcgctgc cgacgtaggc ctcgggctgc tgcagcaccg gcatgtcgag gaagaccaac
     2221 gactggcgca ggtgatggtt ggcgccgaag ccgcccatgg cgcccgggga gaccgtcatc
     2281 acggcagcgg gtttgccctt ccaggcgctc ttgccgtacg gacgcgagcc gacgtcgatc
     2341 gcgttcttca gcacgccagg gaccgagcgg ttgtattccg gcgtcacgaa cagcaccgcg
     2401 tcggcgccgg cgatcttctc cttgaaggcg accgatgctg ccggcggggt cgcgtcgtcg
     2461 tcctggttgt agagcggcag ctggccgatc tcgacgatct cgagcgagag cggcgccggc
     2521 gccatcgccg cgagcgcttt cgccatcttg cgattgaacg aatccttgcg caggctgccg
     2581 acgaccacgg cgacgcgacg agtgctggcc atattggaat tcctttcaga agggagatgg
     2641 atgcgacggc agaatcatcg tccagcccgg atttgtctgc agcgccacgt catgaacaag
     2701 gctttcacgc gcgaggtcga tcgcgaagac gatgaagacg acgacgtcga ggccgccgtc
     2761 ctgccgcagg gcgcgaagaa ctacatcacc gtcgccggct accggcgcct gcgcgaggag
     2821 ctgatgacgc tcctcgacga cgagcgcccg aaggtggtcg aggcggtctc gtgggcggcc
     2881 aagaacggcg accgctcgga gaacggggac tatctgtacg gcaagaagcg cctgcgcgag
     2941 atcgaccgcc gcatccgctt cctgaccaag cggctcgacc tcgccgaggt cgtcgatccg
     3001 tcgcggcacc acggcaacga gcaggtcttc ttcggggcga cggttcgcta cgcgagcgac
     3061 cacggcgagg agcgcacgat ccgcatca
//
LOCUS       DASVHM010000576         2126 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1342633, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000576 DASVHM010000000
VERSION     DASVHM010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1342633"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..439)
                     /gene="tilS"
                     /locus_tag="VF308_10820"
     CDS             complement(<1..439)
                     /gene="tilS"
                     /locus_tag="VF308_10820"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEX7437194.1"
                     /translation="MRAAEPLGVAVIALHVHHGLSPNADAWLAHCRARCERWARSGHA
                     LRFVVERAVTAPAKGESVEAWARKTRYAALREMALAQGVPLVLLAQHRRDQAETFLLQ
                     ALRGAGVAGLAGMPRLTERDGITWVRPWLAQPRAAIEAYVRRHR"
     gene            complement(519..1490)
                     /locus_tag="VF308_10825"
     CDS             complement(519..1490)
                     /locus_tag="VF308_10825"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HEX7437195.1"
                     /translation="MSKRHFLDFEQPVAELESKIEELRYVQNESAVDISEEIDRLGKK
                     SLLLTKDIYSGLTPWQVTQIARHPQRPYTLDYVTEIFTDFQELHGDRAFADDQSIIGG
                     LARFNGQACMVIGHQKGRDTKERGLRNFGMSRPEGYRKALRLMKLAEKFGLPVFTFVD
                     TPGAYPGIGAEERGQSEAIGRNIFEMAQLEVPIIVTIIGEGGSGGALALSVGDQLLML
                     QYSIYSVISPEGCASILWKSAERAADAADALGITAHRLKALGLVDKIVNEPVGGAHRD
                     AKQMAAFLKRALSDALRQVADLTTRELLDRRYERLQSYGRFSDTTAR"
     gene            complement(1561..>2126)
                     /locus_tag="VF308_10830"
     CDS             complement(1561..>2126)
                     /locus_tag="VF308_10830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2 family
                     protein"
                     /protein_id="HEX7437196.1"
                     /translation="LIPQFGDGRLQSPGDAFTTLARSIVGQQISVKAAQSVWDRFAAL
                     VADPSSRLSPQAVLALEPPAIRAAGLSARKVEYLRDLAQHFEGGSVHVRQWQQMDDEA
                     IVDELVAIRGIGRWTAEMFLIFHLMRPNVLPLDDVGLIKGISVNYFSGEPVSRAEARE
                     VGDAWAPFRSVATWYIWRSLDPLPIAC"
BASE COUNT          338 a          701 c          745 g          342 t
ORIGIN      
        1 atcgatggcg gcgcacatag gcctcaatcg ccgcgcgcgg ctgcgcgagc caggggcgaa
       61 cccacgttat cccgtcccgc tcggtgagcc ggggcatgcc ggcgaggccg gcaacgcccg
      121 cgccgcgcag cgcttgcagc aggaatgtct cggcctggtc gcgccgatgc tgggccagca
      181 gcacgagcgg cacgccctgg gccagcgcca tttcccgcaa cgcggcgtag cgggtcttgc
      241 gtgcccaggc ctcgacgctc tcgccctttg cgggcgctgt cactgcgcgt tcgacgacaa
      301 accggagcgc gtggccggag cgcgcccagc gctcgcaacg ggcccggcaa tgcgcgagcc
      361 aggcatcggc gttcgggctc aggccgtgat ggacatgcag ggcgatgacc gcgacaccga
      421 gcggctcggc ggctcgcaag gtcgcgtgca ggagcgccgt cgagtcgcgg cccccgctgt
      481 acgccactgc gacgcacgcc ggggccacgc tcgcggcctc agcgtgcggt cgtgtcgctg
      541 aagcggccgt aggattgcag ccgttcgtag cgacggtcga gcagctcgcg ggtcgtgagg
      601 tcggcgacct ggcgcaaggc gtcgctgagc gcgcgcttga ggaacgcggc catctgcttg
      661 gcatcgcgat gggcgccgcc caccggctcg ttgacgatct tgtcgacgag cccgagcgcc
      721 ttcaggcggt gcgcggtgat gccgagtgca tcggcggcat ccgcagcccg ctcggccgac
      781 ttccacagaa tcgaggcgca gccttcgggc gagatcaccg agtagatcga atattgcagc
      841 atcaacagct ggtcgcccac gctgagggcg agcgcgcccc ccgacccacc ctcgccgatg
      901 atggtgacga tgatcggcac ctcgagctgc gccatctcga agatgttgcg gccgatcgct
      961 tccgactggc cgcgctcttc ggcgccgatg ccgggatagg cgccgggcgt gtcgacgaag
     1021 gtgaacaccg gcaggccgaa tttctcggcg agcttcatca ggcgcagcgc cttgcgatag
     1081 ccctcggggc gcgacatgcc gaagttgcgc aggccgcgct ccttggtgtc gcggcccttc
     1141 tggtggccga tcaccatgca ggcctggccg ttgaaacgcg ccaggccgcc gatgatcgac
     1201 tggtcgtccg cgaacgcgcg atcgccgtga agctcctgga agtcggtgaa gatttcggtg
     1261 acgtagtcga gcgtgtaggg gcgttgtggg tggcgcgcga tctgcgtcac ctgccacggc
     1321 gtgaggcccg agtagatgtc cttcgtgagg agcaggctct tcttgccgag ccggtcgatc
     1381 tcttccgaga tgtcgaccgc cgattcgttc tgcacgtagc gcagttcttc gatcttcgac
     1441 tcgagctccg cgacgggctg ctcgaaatcg agaaagtggc gtttgctcat caggtggggt
     1501 ccggattcat caacgcatga ggttgaaggg actgtggcgc gccgcgctgc aacggcgact
     1561 tcaacaggcg atcggcagag gatccaggct gcgccaaatg taccatgtgg ccaccgaccg
     1621 gaaaggtgcc caggcgtccc cgacctcgcg cgcttcggcc cgggaaaccg gctcgccgct
     1681 gaagtagttg acgctgatgc ccttgatcag gccgacgtcg tcgagcggaa gaacgttcgg
     1741 acgcatcagg tggaagatca ggaacatttc ggcggtccag cggccgatgc cgcggatcgc
     1801 gaccagttcg tcgacgatcg cttcatcgtc catctgctgc cactggcgca cgtgcacgct
     1861 gccgccttcg aagtgctggg ccaggtcgcg caagtactcg accttgcgcg ccgagagccc
     1921 ggcggcgcgg atcgccgggg gctcgagcgc cagcaccgct tgcggcgaga ggcgcgatga
     1981 agggtccgcc accagggccg cgaagcggtc ccagaccgat tgcgcggcct tgaccgaaat
     2041 ctgctggccg acgatcgaac gcgccagtgt cgtgaaggca tccccggggc tttgcagacg
     2101 gccgtcgccg aactgcggaa tgagct
//
LOCUS       DASVHM010000577         1938 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_691537, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000577 DASVHM010000000
VERSION     DASVHM010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_691537"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1031
                     /locus_tag="VF308_10835"
     CDS             <1..1031
                     /locus_tag="VF308_10835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011803162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HEX7437197.1"
                     /translation="GHTIRVESGAGVAASVTDEAFAAVGAEITDRAGALGADLVLKVR
                     APSVDELPLMKSGAALVGMLNPFDREGLQRLAAAGLTSFALEAAPRTTRAQSMDVLSS
                     QANIAGYKAVMIAADKYQRFVPMLMTAAGTVKAARVVILGVGVAGLQAIATAKRLGAV
                     IEASDVRPSVKEQVESLGAKFIDVPYETPEEKEAAEGVGGYARAMPQSWLDRQKVEVA
                     KRVAAADIVITTALIPGRAAPVLVTEEMVKAMKPGSVIVDLAAAQGGNCPLTEADKIV
                     VKHGVTLVGETNLAALVAADASALYARNVLDFLKLVLTKEATFNVPMDDDIVVACLMT
                     QAGEVKRK"
     gene            1055..1381
                     /locus_tag="VF308_10840"
     CDS             1055..1381
                     /locus_tag="VF308_10840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011803161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HEX7437198.1"
                     /translation="MDVVSHTTINLIIFVLAIYVGYHVVWTVTPALHTPLMSVTNAIS
                     AIVIVGAMLAAALTETTLGKTMGVLAVALAAVNVFGGFLVTRRMLEMFRKKEKKAPAA
                     AVEAGK"
     gene            1378..>1938
                     /locus_tag="VF308_10845"
     CDS             1378..>1938
                     /locus_tag="VF308_10845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HEX7437199.1"
                     /translation="MSMNVATLLYLVASVCFIQALKGLSHPTTSLRGNLFGMIGMGIA
                     ILTTAALIVKISGGSAFGMAWVLLGVVVGGGYGAYRARTVEMTQMPELVAFFHSMIGL
                     AAVFIAVAAVAEPHAFGIVPKGEPIPQGNRLELFLGAAIGAVTFSGSVIAFGKLSGKY
                     KFRLFQGAPVQFAGQHKLNLLLGILTV"
BASE COUNT          322 a          636 c          676 g          304 t
ORIGIN      
        1 agggtcacac gatccgggtc gagtcgggcg ccggagtcgc cgccagcgtg accgacgagg
       61 cctttgcggc ggtgggcgcc gagatcaccg accgggccgg tgcgctcggg gcggatctgg
      121 tcctgaaggt gcgcgcgccg agcgtcgacg agttgccgct gatgaagagc ggggccgcgc
      181 tggtcggcat gttgaacccg ttcgatcgcg agggcctcca gcggctggcc gcggcgggcc
      241 tcaccagctt cgcgctcgag gccgcgccgc gcacgacccg cgcgcagagc atggacgtgc
      301 tctcgtcgca ggcgaacatc gccggctaca aggccgtgat gatcgcggcg gacaagtacc
      361 agcgcttcgt tcccatgctg atgacggcgg ccggcaccgt gaaggcggcg cgggtcgtga
      421 tcctcggcgt cggcgtcgcg ggactgcagg cgatcgcgac cgcgaagcgc ctcggcgcgg
      481 tgatcgaggc gagcgacgtg cggccgagcg tgaaggaaca ggtcgagtcg ctcggcgcca
      541 agttcatcga cgtgccctac gagacgcccg aggaaaagga ggcggccgag ggcgtcggcg
      601 gctatgcgcg tgcgatgccg cagagctggc tcgaccggca gaaggtcgag gtcgccaagc
      661 gcgtcgccgc cgccgacatc gtcatcacca ccgcgctgat ccccggccgc gcggcaccgg
      721 tcctcgtgac cgaggagatg gtcaaggcga tgaagccggg cagcgtgatc gtcgacctgg
      781 ccgcggcgca aggcggcaac tgcccgctca ccgaagccga caagatcgtc gtcaagcacg
      841 gcgtcacgct ggtcggcgaa accaacctgg cggcgctcgt cgctgcggac gcgtcggccc
      901 tctacgcgcg caacgtgctc gacttcctga aactcgtgct cacgaaggaa gccacgttca
      961 acgtgccgat ggacgacgac atcgtcgtcg cctgcctgat gacgcaggcg ggcgaagtga
     1021 aacgcaaata agccaaacaa ccggaaccgc gaacatggac gttgtctccc acaccacgat
     1081 caacctgatc atcttcgtgc tcgcgatcta cgtgggctac cacgtcgtct ggaccgtgac
     1141 gcccgcgctg cacacgccgc tgatgtcggt gacgaatgcg atctcggcga tcgtcatcgt
     1201 cggcgcaatg ctcgccgccg ctctcaccga gaccactctc ggcaagacga tgggcgtgct
     1261 cgcggtcgcg ctcgccgcgg tcaatgtgtt cggtggcttc ctggtcacgc gacgcatgct
     1321 cgagatgttc aggaagaagg agaagaaggc gcctgcggcc gccgtggagg ccggcaaatg
     1381 agcatgaacg tcgccaccct gctgtacctg gtcgcgagcg tgtgcttcat ccaggcgctc
     1441 aagggtctga gccacccgac gacctcgctg cgcggcaacc tgttcggcat gatcggaatg
     1501 gggatagcca tcctgaccac cgcggcgttg atcgtcaaga tcagcggtgg gagcgccttc
     1561 ggaatggcct gggtgctgct cggggtggtc gtcggcggcg gctacggcgc ctatcgggcc
     1621 aggaccgtcg agatgacgca gatgcccgag ctggtcgcgt tcttccacag catgatcggc
     1681 ctggcggcgg tgttcatcgc cgttgccgcg gtggccgagc cgcatgcctt cgggatcgtc
     1741 ccgaagggcg aaccgattcc ccagggcaat cgcctcgagc tcttcctcgg cgcggcgatc
     1801 ggcgcggtca ccttcagcgg ctcggtgatc gctttcggca agctctcggg caagtacaag
     1861 ttccgcctgt tccagggcgc gccggtgcag ttcgcgggcc agcacaagct gaacctgctg
     1921 ctcggcatcc tgacggtc
//
LOCUS       DASVHM010000578         4330 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_403492, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000578 DASVHM010000000
VERSION     DASVHM010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4330
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403492"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..638
                     /locus_tag="VF308_10850"
     CDS             <1..638
                     /locus_tag="VF308_10850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEX7437200.1"
                     /translation="IKLLAITKRRDDLRRSPGGTETGAAGPGGIELRVHPTLVPSARL
                     IANVEGAMNAVMVQADAVGTTLYYGKGAGAEPTASAVIADLVDITRLHTADPDHRVPH
                     LAFQPGAMQDTPILPIDQVVTSFYLRLQVADQAGVLARITGILAEHDISIDALLQRPS
                     QHAPAEGATRTDVIILTHDTVEGRMSTAIAQMQALPTVLAPIIRIRKEELS"
     gene            635..2065
                     /gene="thrC"
                     /locus_tag="VF308_10855"
     CDS             635..2065
                     /gene="thrC"
                     /locus_tag="VF308_10855"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEX7437201.1"
                     /translation="MKYISTRGDAVGRGFSEILLEGLAPDGGLYLPERYPAVGEATLE
                     RWRGLPYHAVAFEFLSLYIDDVPPADLRALVAKTYTAAVFGDPRITPLARLDAGVYLQ
                     RLSNGPTLAFKDVAMQLLGNLFEYELGRRGQTLNVLGATSGDTGSAAEYALRGKRGVQ
                     VFMLSPLGRMSPFQQAQMYSLQDPNIHNIAIEGVFDDCQDIVKAVSGDLDFKRRHRIG
                     TVNSINWARLLAQVVYYFVGYFQATPARTPGSSAPLPEVSFAVPSGNFGNICAGHIAR
                     MMGLPIRRLVLATNENNVLDEFCRTGTYRVRRGHETHETSSPSMDISKASNFERFVFD
                     LVGRDPARVRALFEEGVGRHGAFTLTADEFGRVARFGFVSGTSTHADRLATIADTYRR
                     FDTLIDTHTADGLKVARSHIEAGVPMIVLETALPAKFAQAIVEATGREPPRPAALRGI
                     EDLPKRFAVMAADAQAVKQFIADNAG"
     gene            2062..2616
                     /gene="mobB"
                     /locus_tag="VF308_10860"
     CDS             2062..2616
                     /gene="mobB"
                     /locus_tag="VF308_10860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEX7437202.1"
                     /translation="MKVIGFSGYSGSGKTTLVEQLITRLRLAGQRVSVVKHAHHAFDI
                     DQPGKDSWRHRQAGAFEVVIASDRRLAKIREFEVRADPTVHQLIAELVECDWVLVEGF
                     KHADLLKIEVWRAATGKPAQYPSDPYVVAISTDSPELLPHPTGLPLLDLNSPDAVADF
                     LLRNPDRYEYLCPHDFAAAAVDAR"
     gene            2564..3808
                     /gene="glp"
                     /locus_tag="VF308_10865"
     CDS             2564..3808
                     /gene="glp"
                     /locus_tag="VF308_10865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011516688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990586 - divisome complex [Evidence
                     IEA];
                     GO_function: GO:0061599 - molybdopterin molybdotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gephyrin-like molybdotransferase Glp"
                     /protein_id="HEX7437203.1"
                     /translation="MSTSARTTSPPPLLTLDEALTRLLGALGPVAASEALSTFDALGR
                     VLAAAVRSNLDVPSADNTSMDGYALRCADVPAAGVVLQVSQRIPAGVVGTSLEPFTAA
                     RIFTGAQVPAGADAVVMQEQCEALEGAVRVNTVPAPGQWIRRRGEDVRAGAVVLEAGT
                     RLTPQALGLAASVGAASLQVASRPRVALFSTGDELAMPGETLKPGAIYNSNRFTLRGL
                     IEALGCHCDDLGIVPDNLAATREALRRAARSNDLIVSCGGVSVGEEDHLKPAVQAEGR
                     LDLWQIAIKPGKPLAFGTVRRELGAPAWFIGLPGNPVSSFITFLLAVRPFLLRLQGAT
                     ELQPRGLGQRADFEWLRADRRREFLRVRRNAQGGLDLFPNQSSGVLTSVVWADGVVDN
                     PAGKVIHAGDPVVYLPFAELLS"
     gene            3805..4056
                     /locus_tag="VF308_10870"
     CDS             3805..4056
                     /locus_tag="VF308_10870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015013260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEX7437204.1"
                     /translation="MKVAVRYFASVREALGAGESLEIAPGATVGAVRDVLIGRDAAHA
                     AVLERGRAVRCALNQVLSDEGAVVTEGAEIGFFPPVTGG"
     gene            4057..>4330
                     /locus_tag="VF308_10875"
     CDS             4057..>4330
                     /locus_tag="VF308_10875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEX7437205.1"
                     /translation="MASPRVTIQSADFDLGAEVAALRAGDPGVGAVASFIGTVRDRND
                     GLGVSSMELEHYPGMTERAIEAMIDEALRRFEIRQARVIHRVGLLRP"
BASE COUNT          656 a         1525 c         1464 g          685 t
ORIGIN      
        1 gcatcaagct gctcgccatc acgaagcggc gcgacgacct gcggcgctcg ccgggcggca
       61 cggagacggg cgccgccggc ccgggcggga tcgagctgcg cgttcacccg accctggtgc
      121 cgtccgcgcg cctgatcgcg aacgtcgagg gcgcgatgaa cgcggtgatg gtgcaggccg
      181 acgcggtcgg cacgacgctc tactacggca agggcgcggg cgcggagccg accgcctcgg
      241 cggtgatcgc cgatctcgtc gacatcacgc gcctgcatac cgccgatccg gaccaccggg
      301 ttccgcacct cgcgttccag cccggagcga tgcaggacac accgatcctg ccgatcgacc
      361 aggtcgtgac ctcgttctac ctgcgcctgc aggtggccga ccaggcgggc gtcctcgcgc
      421 gcatcaccgg catcctggcg gaacacgaca tctcgatcga cgccttgctg cagcggccga
      481 gccagcatgc gccggccgag ggcgcgaccc gcaccgacgt gatcatcctg acgcacgaca
      541 ccgtcgaggg tcgcatgtcg accgcgatcg cgcagatgca ggctctgccg accgtgctcg
      601 cgcccatcat ccgcatccgc aaggaagaac tcagttgaag tacatcagca cccgcggcga
      661 tgccgtcggg cgcggatttt ccgagatcct gctcgagggc ctggcgccgg acggcgggct
      721 ctaccttccg gaacgctacc cggcagtcgg cgaagcgacg ctggaacgtt ggcgcggcct
      781 cccataccac gcggtcgcgt tcgagttcct ttcgctctac atcgacgacg tgccaccggc
      841 cgatctgcgc gcgctggtcg cgaagaccta cacggccgcg gtcttcggcg atccccgcat
      901 cacgccgctc gcgcgcctcg atgcgggcgt ctacctgcag cggctttcga acgggccgac
      961 gctggcgttc aaggacgtcg caatgcagtt gctcggcaac ctcttcgagt acgagctcgg
     1021 gcggcgcggg caaacgctca acgtgctcgg cgcgacctcg ggcgacaccg gcagcgcggc
     1081 cgagtacgcc ttgcgcggaa agcgcggcgt ccaggtcttc atgctctcgc cgctcggtcg
     1141 gatgagcccg ttccagcagg cgcagatgta cagcctgcag gacccgaaca tccacaacat
     1201 cgcaatcgaa ggcgtgttcg acgattgcca ggacatcgtc aaggcggtgt cgggcgacct
     1261 cgatttcaag cgccgccatc gcatcggcac cgtcaactcg atcaattggg cccggctgct
     1321 ggcccaggtc gtgtactact tcgtcggcta ctttcaggcc acgccggcgc ggacgccggg
     1381 gagcagcgcg cccttgccgg aagtgagctt cgcggttcca tcgggcaatt tcggcaacat
     1441 ctgcgctggc cacatcgccc ggatgatggg cttgccgatc cggcgtctcg tgctcgcgac
     1501 caacgagaac aacgtgctcg acgagttctg ccgcaccggt acctatcggg tccgacgcgg
     1561 ccacgagacg cacgaaacgt cgagtccgtc gatggacatc tcgaaggcct cgaacttcga
     1621 gcgcttcgtc ttcgacctgg tcggccgcga cccggcgcgc gtgcgcgcgc tcttcgaaga
     1681 gggtgtgggc cgccacggtg ccttcacgct gacggccgac gagttcggcc gcgtcgcgcg
     1741 cttcggtttc gtctcgggca cgagcaccca cgccgaccgg ctggcgacga tcgccgacac
     1801 gtaccggcgc ttcgacaccc tgatcgacac gcacaccgcg gacggcctga aggtcgcgcg
     1861 ctcccatatc gaggccggtg tgccgatgat cgtgctcgaa acggcgctgc cggccaagtt
     1921 cgcgcaggcc atcgtcgagg ccacgggccg cgagccgccg cgtcctgcgg cgctgcgcgg
     1981 gatcgaggac ttgcccaagc gcttcgcggt gatggcggcg gacgcgcagg cggtcaagca
     2041 gttcattgcc gacaacgctg gatgaaggtc atcggattca gcggctattc cgggtcgggc
     2101 aaaaccacgc tcgtcgagca gctcatcacg cgcctcaggc tcgccggaca gcgcgtctcg
     2161 gtcgtcaagc atgcgcacca tgccttcgac atcgatcagc ccggcaagga ttcgtggcgg
     2221 caccgccagg ccggcgcatt cgaggtcgtg atcgcgtccg atcggcgcct cgccaagatc
     2281 cgcgagttcg aggttcgcgc cgacccgacc gtgcaccagc tgatcgccga gctggtcgaa
     2341 tgcgactggg tattggtcga gggattcaag catgccgatc tgctcaagat cgaagtctgg
     2401 cgtgcggcga cgggcaagcc ggcgcaatat ccgtccgatc cgtatgtcgt cgcgatctcg
     2461 accgacagcc ccgaactgtt gccgcatccg accggccttc cgctgctcga cctgaactcg
     2521 cccgacgccg tcgccgattt tctgctccgc aaccccgacc gctatgagta cctctgcccg
     2581 cacgacttcg ccgccgccgc tgttgacgct cgatgaagcg ctaacccggc tgctgggcgc
     2641 gctcgggccg gtcgccgcca gcgaagcgct gtcgaccttc gacgcgctcg gccgcgtgct
     2701 cgccgccgca gtcaggtcga acctcgacgt gccctcggcc gacaacacgt cgatggacgg
     2761 ctatgcgctg cgttgtgcgg acgtgccagc cgcaggggtc gtgctgcaag tcagccagcg
     2821 cattccagcc ggggtcgtgg gcacttcgct cgaacccttc acggccgcgc gcatcttcac
     2881 cggcgcgcag gtcccggccg gggccgacgc cgtggtgatg caggagcaat gcgaagcgct
     2941 ggaaggcgcg gtgcgcgtga acacggtgcc ggcacccggc cagtggatac gccggcgcgg
     3001 cgaggacgtg cgcgcgggcg cggtcgtgct cgaggcaggc acgcgcctca cgccgcaggc
     3061 actcggcctg gccgcgtcgg tcggtgccgc gtcgctgcaa gtggcgtccc ggccgcgcgt
     3121 ggcactgttc tcgaccggcg acgagctcgc gatgcccggt gagacgctaa agccgggcgc
     3181 gatctacaac tcgaaccggt tcaccctgcg cggcctgatc gaggcgctcg gctgtcattg
     3241 cgacgatctc ggcatcgttc ccgacaacct cgccgccacc cgagaggcgc tgcgccgcgc
     3301 cgcgcgcagc aacgacctga tcgtcagttg cggcggcgtg tcggtcggcg aggaagacca
     3361 tctcaagccc gcggtgcagg ccgagggtcg gctcgatctg tggcagatcg caatcaaacc
     3421 cggcaagccg ctcgctttcg gcacggtgcg gcgcgagctg ggagcgccgg cctggttcat
     3481 cggcctgccg ggcaacccgg tttcgagctt catcacgttt ctgctcgcgg tgcggccgtt
     3541 cctgctgcgc ctccaggggg cgaccgaact ccagccgcgc ggcctcggtc agcgcgccga
     3601 cttcgagtgg ctgcgcgcgg accggcgccg cgagttcctt cgggtgcgtc gcaatgcgca
     3661 gggtggcctc gacctgttcc cgaaccagag ctcgggcgtg ctgacctcgg tcgtatgggc
     3721 cgatggcgtc gtcgacaatc cagccggcaa ggtcattcac gccggcgacc cggtcgtcta
     3781 tctgccgttt gccgaactgc tgtcatgaag gtcgccgtcc gctatttcgc atcggtccgt
     3841 gaagcgttgg gagccggcga atcgctcgag atcgcgcccg gcgcgaccgt cggcgcggtg
     3901 cgcgacgtcc tgatcgggcg cgacgccgcc cacgccgccg tgctcgagcg cggccgcgcc
     3961 gtgcgctgcg cgttgaatca ggtgctgagc gacgaaggcg cagtggttac cgagggcgcc
     4021 gaaatcggct ttttcccacc cgtcaccgga ggttagatgg cgagtccgcg ggtcaccatc
     4081 cagagcgccg atttcgacct cggcgccgag gtcgcggcgc tgcgggcggg cgatccgggc
     4141 gtcggggccg tggcgagttt catcggcacg gtgcgcgacc gcaacgacgg cctcggcgtg
     4201 agctcgatgg aactcgagca ctatccgggc atgaccgagc gtgccatcga ggcgatgatc
     4261 gacgaggcgc tgcgccgctt cgagattcgc caggcgcgcg tgatccaccg cgtcggcctg
     4321 ctccggccgc
//
LOCUS       DASVHM010000579         2332 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_257497, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000579 DASVHM010000000
VERSION     DASVHM010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2332
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257497"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..1314
                     /locus_tag="VF308_10880"
     CDS             58..1314
                     /locus_tag="VF308_10880"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEX7437206.1"
                     /translation="MVEADWPERPKRNIFYPPSLLKSLGWPSEKDRRGAADARFLDLL
                     ASASRRTLLSTFTLDEDAIVPRSVQLDEVSRARLSAVARAPFEDARIFADEALSLHPP
                     FFGPLDVEARAWAELRASRSSGDRPEFHGHVTGEPAPARAWSVSALETYVGCPFKFFA
                     QHILKLEEEPDDEEVMDPRRQGQFVHDVFERFFTAWQAAGHRAVTPDNLNAARDMFTA
                     TVDRALERLPAAEAGLERTRLLGSPAAAGLGEAVLRMEAERPIPVVERLLEHRLTGDF
                     TIATAEGSRTIALKGKADRLDLLADGTFRLIDYKLGWPPNRARALQLPIYSVCAEQRL
                     VSYRGRNWTLGEAAYLAFKGPKRVVPLFASPADRPKVLAEAQQRLADTVDAISRGEFP
                     PAPDDVFRCESCSFASVCRKDYIGDV"
     gene            1307..>2332
                     /locus_tag="VF308_10885"
     CDS             1307..>2332
                     /locus_tag="VF308_10885"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEX7437207.1"
                     /translation="MSESRLPFDDEPVRLPLAGPRDGQPDLLHQPDLVDAAARAHAVD
                     PSKNVVLEASAGTGKTRVLVERYVNLLRAGVEPDHILAITFTRKAAAEMRQRIIERLK
                     EASRLSEFDAGRWRDLRERLGDIAISTIDAFCLSLLREFPLEADVDPGFDLADNTEVP
                     RLVGESLDQALRICRAVAKDDEDVALVFAQLGERRLRSGMSALLDRRLVAPHALRRFL
                     QKGPRDLTVATACGSAAARFREVFARVPDGIDRFLNDGPRRHPQFAMLADDLRRLAGR
                     VTVAESDRDAQAFRSLVDRIRGYFLTQEGKPRGDRFAGTGFTAADCDGADAWRRHRAS
                     AAQIAPDI"
BASE COUNT          339 a          814 c          805 g          374 t
ORIGIN      
        1 ctggttgacg atcaggccgt ccgctacggc gagttcgacg acatcgcgat cgtcggcatg
       61 gtggaggccg actggccgga gcgcccgaag cgcaatattt tctacccgcc gtcgctcctc
      121 aagtcgctcg gctggccctc agagaaagac cggcgcggtg ccgccgacgc gcgcttcctc
      181 gacttgctgg cctccgcgtc acgccgcacg cttctctcga ccttcacgct cgacgaggac
      241 gcgatcgtgc cgcgttcggt gcagctggat gaagtgtcgc gtgcccgcct ctccgccgtg
      301 gcgcgggcgc cgttcgaaga cgcgcgtatt ttcgccgacg aagcgctgtc gctgcacccg
      361 cccttcttcg gcccgctcga tgtcgaagcc cgtgcctggg ccgagctgcg agcgagccga
      421 tcgagcggcg atcggcccga gttccacggc cacgtgaccg gcgagccggc tccggcgcgc
      481 gcgtggtcgg tcagcgcgct cgagacgtac gtcgggtgtc ccttcaagtt tttcgcccag
      541 cacatcctga agctcgaaga ggagccggac gacgaagaag tgatggaccc gcgccggcaa
      601 gggcagttcg ttcacgacgt gttcgagcgg ttcttcacgg catggcaggc ggctggtcat
      661 cgagcggtga cgccggacaa tctcaacgcg gcccgcgaca tgttcacggc gaccgtcgac
      721 cgcgcgctgg agcggttgcc ggccgccgaa gccggtctcg aacgcacccg cctactcgga
      781 tcgccggccg ccgccgggct gggcgaggcg gtgctgcgca tggaggccga acggcccatt
      841 cccgtggtcg agcgactgct cgagcatcgc ctcaccggcg acttcaccat cgccacagcc
      901 gagggctctc gcacgatcgc gctgaaaggg aaggccgacc ggctcgattt gctggccgac
      961 ggcacgttcc ggctgatcga ctacaagctg ggatggccgc ccaaccgggc cagggcgctc
     1021 cagttgccca tctacagcgt gtgcgccgaa cagcgtctcg tgtcgtaccg gggacgcaac
     1081 tggacgctcg gcgaggccgc ctacctcgcc ttcaaaggac ccaagcgcgt cgttccgctg
     1141 ttcgcatcgc ctgccgatcg gccgaaggtg ctggccgaag cgcaacagcg gctcgcggac
     1201 acggtcgatg ccatttcgcg cggcgaattt ccgccggcgc cggacgatgt gttccggtgc
     1261 gagagctgca gcttcgcgtc ggtgtgtcga aaggactaca taggcgatgt ctgaatcgcg
     1321 ccttcctttc gacgacgagc cggtccggct tcccctcgcc gggcctcggg acgggcagcc
     1381 ggacctgtta caccagccgg acctcgtgga cgcggcagcg cgcgcgcatg cggtcgatcc
     1441 gtcgaagaac gtcgtgctcg aggcgtcggc cggtaccggc aagacgcgcg tgctggtcga
     1501 gcggtacgtg aacctgctgc gcgcaggcgt cgagccggac cacattctcg cgatcacgtt
     1561 tacgcgcaag gccgcggccg agatgcgcca gcgcatcatc gagcggctga aggaagcgag
     1621 ccgcctgtcc gagttcgacg cggggcgctg gcgcgacctg agggagcggc tcggcgacat
     1681 cgcgatctcc accatcgacg cgttctgcct gtcgctcctc cgcgagttcc cgctcgaggc
     1741 cgacgtcgat cccgggttcg acctcgcgga caacacggaa gtgccgcggc tcgtcggcga
     1801 gtcgctcgat caggcgctgc gcatctgccg cgccgtcgcg aaagacgacg aggatgtcgc
     1861 ccttgtgttc gcgcagctgg gcgaacgccg cttgcgcagc gggatgtcgg cgctgctgga
     1921 ccgccggctc gtggcgccgc acgcgcttcg ccggttcctc cagaaagggc cgcgcgatct
     1981 gaccgtggcg accgcgtgcg gctcggccgc ggccaggttc cgcgaggtgt ttgcccgcgt
     2041 gccggatggc atcgaccggt tcctgaacga cggcccgcgc cgccacccgc agttcgcgat
     2101 gctggccgac gacctgcgcc ggctggctgg gcgggtgact gtcgcggagt ccgaccggga
     2161 cgcgcaggcg ttccgctcgc tcgtcgaccg cattcgcgga tatttcctca cgcaggaagg
     2221 gaagccccgt ggcgaccgct ttgccggcac cggattcacc gcggccgatt gcgatggcgc
     2281 ggacgcgtgg cgccgtcatc gcgcgtcggc cgcgcagata gccccggaca tc
//
LOCUS       DASVHM010000580         3149 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_981650, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000580 DASVHM010000000
VERSION     DASVHM010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_981650"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..340
                     /locus_tag="VF308_10890"
     CDS             <1..340
                     /locus_tag="VF308_10890"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX7437208.1"
                     /translation="VSVERGQWEAARALGMAPRQVMRRVVLPQAVKRMIPAFLERAIE
                     LMKTTTLVAIVSYADLLFQTNEVAQKTFRPLEVFTVTALIYFVVIFAASTLVHGLERR
                     LAASGEGMAR"
     gene            340..1014
                     /locus_tag="VF308_10895"
     CDS             340..1014
                     /locus_tag="VF308_10895"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEX7437209.1"
                     /translation="MGALYRWNFAPVLENLDVLWVGAIGTMRLFVICVVLGFGFGLVV
                     GLGRHARAHWIHLPATAFVEFFRNTPVLVQILWFYYALPILLPFQISPLTAAALGISL
                     NSAAFSAEIYRGGIESIDRGQAEAARALGMTPAQAMRRIVLPQALRRMLPALTNRGIE
                     IFKMTTLASAVAYVELLQQGKLLASLNFNPIETYSVIAVVFFLCLFPLVQATYALERR
                     LGRSDA"
     gene            1017..1844
                     /locus_tag="VF308_10900"
     CDS             1017..1844
                     /locus_tag="VF308_10900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEX7437210.1"
                     /translation="MAEASSPVGATPAGNAQPLLRVRGLEKHFGDHAVLRGIDLDVMP
                     GDRIAILGASGSGKSTLLRCLNFMERPSAGVVELASQAIGRAAPGKADPGRRTYDEAE
                     LTRVRQRVGMVFQQFNLFPHMTALGNVMEGLRTVRGQREPEARTRAQAELARVGLADK
                     AEAYPARLSGGQKQRVAIARALAMDPEVLLFDEPTSALDPELVGEVLRVIRSLAEEGR
                     TMLLVTHEIGFAYHVANRVLFIAEGVIHEQGTPDQVLKHPTQPRTRAFVDRHREFDF"
     gene            1862..2806
                     /locus_tag="VF308_10905"
     CDS             1862..2806
                     /locus_tag="VF308_10905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEX7437211.1"
                     /translation="MTAAPPNALAQGESAQGYVADPRNDGVLVYVNGAFVPRDEAHVS
                     IFDSGFVLGDGIWEGLRLVQGRIISLDAHLDRLYEGATSIALDIGLTRDELTRAVLDT
                     LAKNAMTDGAHIRLMVTRGVKRTPNQDPRFVIGKATVVIVAEFKTPKPESKARGLSLF
                     TSTFRTSGPDVFDLRLNSHSRLNLIQALIQAIHAGADEALMLDPRGFVASCNSTNFFI
                     VRQGELWTSTGAYSFKGITQKNVIDAWTAAGGAARECDFTLAQVYSADEAFVTGTLGG
                     VTPVTKVDGRTIGEGRPGAQTIRAGELYLQRVTATIQV"
     gene            complement(2853..>3149)
                     /locus_tag="VF308_10910"
     CDS             complement(2853..>3149)
                     /locus_tag="VF308_10910"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HEX7437212.1"
                     /translation="FENPVPLMKVASKYALPTVTANGNIIAAGALVLLAHSGDEQDER
                     FAWFVDKILRGAKPAELPIQQPTRFTLVVNLKAAKALGLTVPRSILLRADEVVK"
BASE COUNT          495 a         1091 c         1060 g          503 t
ORIGIN      
        1 cgtctcggtg gagcgcggcc aatgggaagc ggcacgcgcg ctcggcatgg caccgcggca
       61 ggtgatgcgc cgggtcgtgc tgccgcaggc cgtcaagcgg atgatcccgg cctttctcga
      121 gcgcgcgatc gagctgatga agacgacgac gctcgtcgcc atcgtctcgt acgccgatct
      181 gctgttccag accaacgagg tggcgcagaa gacgtttcgg ccgctcgagg tcttcaccgt
      241 gacggcgctg atctacttcg tcgtcatctt cgcggcgagc acgctggtgc acgggctcga
      301 gcggcgtctc gccgcgagcg gtgaagggat ggcgcgctga tgggtgcgct ctaccgctgg
      361 aacttcgcgc cggtgctcga gaacctcgac gtgctctggg tgggcgcgat cggcacgatg
      421 cgcctcttcg tcatctgcgt cgtgctcggc ttcggcttcg ggctcgtcgt cggcctcggg
      481 cggcatgcgc gagcgcactg gatccacctg ccggcgacgg ccttcgtcga gttcttccgc
      541 aacacgccgg tgctggtgca gatcctgtgg ttctactacg cgctgccgat cctgcttccg
      601 ttccagatca gcccgctgac ggcggcggcg ctcggcatct cgctgaactc ggccgccttc
      661 tcggccgaga tctaccgcgg cggcatcgaa tcgatcgacc gcggccaggc cgaggcggcg
      721 cgcgcgctgg gcatgacgcc ggcgcaggcg atgcgccgga tcgtcctgcc gcaggcgctg
      781 cggcggatgc tgcccgcgct caccaaccgc ggcatcgaga tcttcaagat gacgacgctc
      841 gcctcggcgg tggcctacgt cgagctgctg cagcagggca agctcctcgc ctcgctgaac
      901 ttcaacccga tcgagaccta cagcgtcatc gccgtcgtct tcttcctgtg cctctttccg
      961 ctggtgcagg cgacctatgc gctggagcgg cgcctcggcc ggtcggacgc atgacgatgg
     1021 ccgaggcttc atcaccggtc ggcgcaacgc cagcgggcaa tgcgcagccg ctgctgcgcg
     1081 tgcgcgggct ggagaaacac ttcggcgacc acgccgtgct gcgcggcatc gacctcgatg
     1141 tcatgcccgg cgaccgcatc gccatcctcg gcgcctcggg ctcgggcaag agcacgctgc
     1201 tgcgctgcct caacttcatg gagcggccga gcgccggcgt cgtcgagctc gccagccagg
     1261 cgatcggccg cgccgcgccg ggcaaggccg atcccggccg gcgcacctac gacgaagccg
     1321 agctgacgcg cgtgcgccag cgcgtcggca tggtgttcca gcagttcaac ctgttcccgc
     1381 acatgaccgc gctcggcaac gtgatggagg ggctgcgcac ggtgcgcggc cagcgcgagc
     1441 ccgaggcgcg cacgcgcgcg caggccgagc tcgcccgcgt cggcctggcc gacaaggccg
     1501 aggcctaccc ggcgcggctt tcgggcggac agaagcagcg cgtcgccatc gcccgcgcct
     1561 tagcgatgga ccccgaggtg ctgctgttcg acgagccgac gtccgcgctc gaccccgagc
     1621 tggtcggcga agtgctgcgc gtgatccgct cgctcgccga ggaaggccgc acgatgctgc
     1681 tggtgacgca cgagatcggc ttcgcgtacc acgtcgccaa ccgcgtgctg ttcatcgccg
     1741 agggcgtgat ccacgagcag ggcacgcccg accaggtgct caagcacccg acgcagccgc
     1801 gcacgcgggc gttcgtcgac cgccaccgcg aattcgactt ctgacttcga gaacgaatgc
     1861 catgaccgca gcccccccga atgccctcgc ccagggcgaa agcgcccagg gctacgtcgc
     1921 cgacccgcgc aacgacggcg tgctggtcta cgtcaacggt gccttcgtgc cgcgcgacga
     1981 ggcccacgtc tcgatcttcg acagcggctt cgtcctcggc gacggcatct gggaggggct
     2041 gcgcctggtg cagggccgca tcatcagcct cgacgcccac ctcgaccgcc tctacgaagg
     2101 cgcgacctcg atcgcgctcg acatcggcct gacgcgcgac gagctgacgc gagccgtgct
     2161 cgacacgctg gcgaagaacg cgatgaccga cggcgcgcac atccggctga tggtgacgcg
     2221 cggcgtcaag cgcacgccga accaggaccc gcgcttcgtg atcggcaagg cgacggtcgt
     2281 catcgtcgcc gagttcaaga cgcccaagcc cgagtcgaag gcgcgcggcc tctcgctctt
     2341 cacgtcgacc tttcgcacca gcggccccga cgtcttcgac ctgcgcctca actcgcacag
     2401 ccgcctgaac ctgatccagg cgctgatcca ggccatccac gccggcgccg acgaagcgct
     2461 gatgctcgac ccgcgcggct tcgtcgcgag ctgcaactcg accaacttct tcatcgtccg
     2521 ccaaggcgag ctgtggacct cgaccggcgc gtattcgttc aagggcatca cccagaagaa
     2581 cgtcatcgac gcgtggacgg cggccggcgg cgcggcccgc gaatgcgatt tcacgctcgc
     2641 gcaggtgtac tcggccgacg aggcgttcgt gaccggaacg ctcggcggcg tgacgccggt
     2701 gacgaaggtg gacgggcgga cgatcgggga gggacggccg ggtgcgcaga cgatacgggc
     2761 cggtgagctc tacttgcagc gggtgaccgc gacgatccag gtttgaaacg cgagtggact
     2821 agacgcactg cagctgccgt gcgaccgaac gatcatttga cgacctcgtc agcccgcagg
     2881 agtatcgatc gagggaccgt gaggccgagc gccttcgcag ctttcaggtt gacaacgagc
     2941 gtgaatctcg tcggttgctg gatcggcagt tcggcgggct tggcgccgcg aaggattttg
     3001 tcgacgaacc aagcgaagcg ttcgtcttgc tcgtccccgg aatgagcgag aaggaccaat
     3061 gcgcccgctg caatgatgtt gccgtttgct gtaacggtcg gcaacgcgta cttcgatgca
     3121 accttcatga gcggaactgg attctcgaa
//
LOCUS       DASVHM010000581         2206 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_41142, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000581 DASVHM010000000
VERSION     DASVHM010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41142"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..452)
                     /locus_tag="VF308_10915"
     CDS             complement(<1..452)
                     /locus_tag="VF308_10915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019142866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7437213.1"
                     /translation="MNLSQPFVRRPIGTVLLTAGVALAGIAGFFALPVSPLPQVDFPV
                     ISVSASIPGASPDTMATSVATPLERRLGTIAGVNEITSSSSIGTTRVTLQFDLSRNID
                     GAAREVQAAINASRVDLPTTLRSNPTYRKANPSDAPVIILALTSETMSP"
     gene            complement(449..>2206)
                     /locus_tag="VF308_10920"
     CDS             complement(449..>2206)
                     /locus_tag="VF308_10920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013542534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7437214.1"
                     /translation="MSARWLKADHDKAVAKKAARAGLGPSRVQRFFTGLMQRYDGALT
                     WVIDHQTITLLDAFATFALTALLYVTIPKGLFPTQDTGQLQARIQAAQDVSYERMTQL
                     QQQAARAILADPDVVTLSSFVGVDAANNTMLHTGSMLINLKPGHADQQAIMDRLRERV
                     GRVAGVTLSLQPTQDLTIDAETGPTQYRVSLEGVDSAVITAWMGKLIERLRSVQEVRN
                     VSSDAGAQGLAAFVNVNRDTASRLSISASSVDDALYSAFGQRIVSTIFTETNQYRVIL
                     EAQPGLASNVEGLGRLNLIASGGTPTPLAAFATITEQPAPLQITHVSQYPASTLNFDT
                     APGTSLGNAVDAIRAAVKEVGLPASITMTFLGASGAYERSLANQLWLILAAVVCVYIV
                     LGVLYESYVHPLTILSTLPSAGVGALLALMITGNDLGVIGIIGIILLIGIVKKNAIMM
                     IDFAIDAERSEGKSPREAIHQAALLRLRPILMTTMAALFAALPLMLSWGDGAELRRPL
                     GLAIFGGLIVSQLLTLFTTPVIYLGFDRLGGGTTRRRPDPDDVPAEATARAEQRAAPK
                     PARVPLGDRPAYSSDEGQS"
BASE COUNT          320 a          731 c          803 g          352 t
ORIGIN      
        1 ggcgacatcg tctccgacgt gagcgcgagg atgatcaccg gcgcgtccga cgggttcgcc
       61 ttgcggtagg tcgggttgct gcgcagcgtc gtcggcagat cgacgcggct ggcgttgatc
      121 gccgcctgca cctcgcgcgc agcgccgtcg atgttgcgac tgaggtcgaa ctggagcgtg
      181 acgcgggtcg tgccgatcga gctcgacgag gtgatctcgt tgacgccggc gatcgtgccg
      241 agacgccgct cgagcggcgt cgcgacgctc gtcgccatcg tgtcggggct cgcgcccggg
      301 atgctcgcgc tgaccgagat gaccgggaag tcgacctgcg gcagcggtga gaccggcagc
      361 gcgaagaagc cggcgatccc ggcgagtgcc acccccgccg tcagcagcac cgtgccgatc
      421 ggacgccgca cgaagggctg cgacaggttc atgactgccc ctcgtccgac gaatacgccg
      481 gccggtcccc caaggggacg cgtgccggct tgggagcggc ccgctgctcg gcccgcgccg
      541 tcgcctccgc gggcacgtcg tccggatccg gccggcgccg cgtcgtgccg ccgccgagcc
      601 ggtcgaagcc gaggtagatc accggcgtcg tgaagagcgt cagcagctgg ctcacgatca
      661 ggccaccgaa gatcgcgagg ccgagtggcc ggcgcagctc ggcgccatcg ccccagctga
      721 gcatcagggg cagcgcagcg aagagcgccg ccatggtcgt catcaggatc ggccgcaggc
      781 gcaggagcgc ggcctgatgg atcgcttcgc gcgggctctt gccttcgctg cgttcggcat
      841 cgatcgcgaa gtcgatcatc atgatcgcgt tcttcttgac gatgccgatc agcaggatga
      901 tgccgatgat gccgatcacg ccgaggtcgt tgcccgtgat catcagcgcg agcagcgcgc
      961 cgacgccggc cgacggcagc gtcgacagga tcgtcagcgg gtgcacgtag ctttcataga
     1021 gcacgccgag cacgatgtag acgcagacca cggccgcgag gatcagccag agctggttcg
     1081 cgagcgaccg ttcgtacgcg cccgacgcgc cgaggaaggt catcgtgatg ctcgccggca
     1141 ggccgacctc cttgacggcg gcgcggatcg cgtcgaccgc gttgccgagc gacgtgcccg
     1201 gcgcggtgtc gaagttcagc gtgctcgccg ggtactgcga cacgtgcgtg atctgcagcg
     1261 gcgccggctg ttcggtgatg gtcgcgaacg cggcgagcgg cgtcggcgtg ccgccgctcg
     1321 cgatcaggtt cagcctgccc aggccttcca cgttgctcgc cagcccgggc tgggcttcga
     1381 ggatcacccg atactggttg gtctcggtga agatcgtcga gacgatgcgc tggccgaacg
     1441 cgctgtagag cgcgtcgtcg accgagctcg cgctgatcga caggcgcgac gcggtgtcgc
     1501 ggttcacgtt gacgaaggcc gccaggccct gcgcgccggc gtcgctgctg acgttgcgca
     1561 cctcctgcac gctgcgcagg cgctcgatca gcttgcccat ccaggccgtg atcaccgcgc
     1621 tgtcgacgcc ttcgagcgac acgcggtact gcgtcgggcc ggtctcggcg tcgatcgtca
     1681 ggtcttgcgt cggctgcagg gagagcgtca cgccggcgac gcggccgacc cgttccctca
     1741 gccgatccat gatcgcctgc tggtcggcat gcccgggctt cagattgatc agcatgctgc
     1801 cggtgtggag catcgtgttg ttggccgcat cgacgccgac gaaagagctc agggtgacga
     1861 catccggatc ggcgaggatg gcccgggcgg cctgctgctg gagctgggtc atgcgctcgt
     1921 acgagacgtc ctgcgcggcc tggatgcgcg cctgcagctg gccggtgtcc tgggtcggga
     1981 agaggccctt cgggatcgtg acgtagagca gcgcggtcag ggcgaaggtg gcgaacgcgt
     2041 ccagcagcgt gatcgtctgg tggtcgatga cccaggtgag cgcgccgtcg tagcgctgca
     2101 tcaggcctgt gaagaaacgc tgcacgcggc tcggcccgag gccggcgcgc gcggccttct
     2161 tcgcgaccgc cttgtcgtgg tcggccttga gccagcgcgc cgacat
//
LOCUS       DASVHM010000582         3516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_620017, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000582 DASVHM010000000
VERSION     DASVHM010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3516
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_620017"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            197..1906
                     /locus_tag="VF308_10925"
     CDS             197..1906
                     /locus_tag="VF308_10925"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437215.1"
                     /translation="MSALPPWSRFYGNVPSSLDYPEVTLYEALAATARRVPDAIAWDF
                     FGTRSDYRSLLAQVDRCAAALAGEGLRAGDRFLISMPTSPPGVIAFYAAIRIGALPAL
                     IHPLSTAPEITHFLDATGARMALTLDAFYGPLAAARPQKPLDKIILARIADYLSPLKK
                     VGFWLTKGRKIAKVPADARVKWWAPLMAAAPREVAIANANTNDPAAILFSGGTTGRPK
                     GILLSHRNFIAEGRGCAAWCAMDENDAILAILPIFHGFGLGVCVNAVFMAGGKSIFVP
                     QFSAEIVAKLLRSERPNVLVGVPTLFDALSKDPSLAAADLSCLSACFCGADTLPRVVK
                     ERFEKLVAERGGKVKLLEGYGLTEAVSGIMAMPIGEYREGSIGIPFPDMLAKICAPGT
                     TDEVDVGQEGEICIAGPAVMLGYLDDPQANAETLRLHGDGRTWLHTGDLGRMDADGFF
                     YFSVRLKRMIKSSGFNVYPAQVEAAMRGHPEVAEACVIGVPDPAQVERVIAYVVLREP
                     SRAGPQMQDALIAFCRERLIKWSCPREVEFVDALPLTNVGKVDYRSLERRHAKETSTR
                     EGD"
     gene            1908..>3516
                     /locus_tag="VF308_10930"
     CDS             1908..>3516
                     /locus_tag="VF308_10930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HEX7437216.1"
                     /translation="MIATGIPAHGGERVAAALAANGVRFIFTLCGGHISPILVAAKAR
                     GIRIIDTRDEATAVFAADAVARLTGTTGVAAVTAGPGLTNTITALKNAQLAQSPVLLL
                     GGAAPTALQGRGALQDIAQKPLIAPHVKWLKQVRRVADLGSAVEEALVVAREGVPGPT
                     FVECPVDLLYDEKLIRGWYADAAGKGMAIADRALRWYLERHAARMFAGSGVAYAPVGR
                     AVAVGQASEAAVARAAEAFTKAERPLLVIGSQTLVEASEAAMVAAAVDRLGVPVYLSG
                     MARGLLGRDASLQMRHARRQALRESDCVLLAGVPCDFRLDYGRHVRRSATLVAANRSP
                     RDARLNRKPSIEAIGDAGRFIAALADRVGERAKRPEWIVALDKRDAEREAEIDAQARL
                     PGGHVNPVGFFRALDRAAGDGAIFVADGGDFVATASYILRPRGPLAWLDPGAFGTLGV
                     GAGFALGAAAVRPRSEVWLVWGDGACGYGLAEFDTFVRHGMPVIAVVGNDAGWTQIAR
                     EQVKMLGDDVGTVLSRTAYHEVARGFGA"
BASE COUNT          506 a         1212 c         1243 g          555 t
ORIGIN      
        1 ttctccggtg cgtgggcgcg atcgccacga tgtccgatga ccagtctggc atgaggatcg
       61 agcaggatca tggacgggca ctgtcctcag gggtgcgcaa taggcgacta gagtacgcca
      121 gcatcctcgc ttgcctcgca ctcggcgggt aggctaggtg aggcgggccg ctcgaagccc
      181 cggcaggaat ccttgaatga gcgcattgcc cccctggagt cgcttctacg gcaacgttcc
      241 gtcttcgctc gactatcccg aggtcacgct ctacgaggcg ctggccgcga ccgcccggcg
      301 cgttcccgac gccatcgcct gggacttctt cggcacgcgg tccgactacc gctcgctgct
      361 cgcgcaggtc gatcgttgcg ctgcggcgct ggccggcgag gggctcaggg ccggcgaccg
      421 cttcctgatt tcgatgccga cgtcgccgcc gggcgtgatc gcgttctacg ccgcgatccg
      481 catcggcgcg ctcccggcct tgatccaccc gctctcgacg gcgcccgaga tcacgcattt
      541 cctcgacgcg acgggcgcgc gcatggcact gacgctcgat gccttctacg ggccgctcgc
      601 ggcggctcgg ccgcagaagc cgctcgacaa gatcatcctg gcgcgaattg cggactacct
      661 ctcgcccttg aagaaggtcg gcttctggct gacgaagggc cgcaagatcg ccaaggtgcc
      721 tgcggatgcc cgggtgaagt ggtgggcgcc cctgatggcc gctgcgccgc gcgaggtggc
      781 gatcgccaac gccaacacca acgaccccgc tgcgatcctg ttctccggcg gcacgaccgg
      841 gcgccccaag ggcatcctcc tgtcgcatcg caacttcatc gccgaaggcc ggggctgcgc
      901 ggcgtggtgc gcaatggacg agaacgacgc catcctggcc atcctgccga tcttccacgg
      961 cttcggtctc ggcgtgtgcg tgaacgccgt cttcatggcc ggcggcaagt cgatcttcgt
     1021 gccgcagttc agcgccgaga tcgtggccaa gctcctgcgc agcgagcggc cgaacgtgct
     1081 ggtcggcgtg ccgacgctgt tcgatgcgtt gagcaaggac ccttcgcttg ccgctgccga
     1141 cctgtcgtgc ctcagcgcct gcttctgcgg agcggacacc ttgccgcgcg tcgtcaagga
     1201 gcgcttcgag aagctggtgg ccgagcgcgg cggcaaggtc aagctactcg agggctacgg
     1261 gctcaccgag gcggtcagcg gcatcatggc catgccgatc ggcgaatacc gcgaaggctc
     1321 gatcggcatt ccgtttccgg acatgctggc gaagatctgc gcccccggca ccaccgacga
     1381 ggtggacgtc ggccaggaag gagagatctg catcgccggc ccggcggtga tgctgggcta
     1441 cctcgacgac ccgcaggcca acgccgagac gctgcgcctg catggcgacg gccgcacctg
     1501 gctgcatacc ggcgacttgg gccgcatgga tgcagacggc ttcttctact tttcggtccg
     1561 cctgaaacgc atgatcaagt cgtccggatt caacgtctac ccggcccagg tcgaagcggc
     1621 gatgcgcggg catccggagg tggccgaggc gtgcgtgatc ggcgtccccg acccggcgca
     1681 ggtcgagcgc gtgatcgcct atgtggtgtt gcgcgagcct tcgcgcgcgg ggccgcagat
     1741 gcaggacgcg ctgatcgcgt tctgccgcga gcgtctgatc aagtggtcgt gtccgcgtga
     1801 agtggagttc gtcgacgcgc tgccactgac caacgtcgga aaagtcgact accgctcgct
     1861 ggaacgacgg catgcaaagg aaacctcgac ccgggagggt gactgacatg atcgcgaccg
     1921 gcatcccggc gcacggcggc gaacgcgtcg ccgccgccct cgccgcgaac ggcgttcgct
     1981 tcatcttcac gctgtgcggc gggcacatct cgccgatcct ggtggccgcc aaggcacgcg
     2041 gcatcaggat catcgacacc cgcgacgagg cgaccgcagt cttcgccgcc gatgcggtgg
     2101 cgcggctcac cggcacgacc ggcgtcgccg cggtcaccgc cggcccgggg ctgaccaaca
     2161 cgatcactgc gctgaagaac gcgcagctcg cgcaatcgcc ggtcctgctg ctgggcggtg
     2221 cggcgccgac cgccttgcag ggccgggggg cgctgcagga catcgcccag aagccgctca
     2281 tcgcgccgca tgtgaaatgg ctgaagcagg tgcgacgcgt cgccgatctc ggttccgcgg
     2341 tcgaggaggc gctcgtcgtc gcgcgcgaag gcgtgccggg cccgaccttc gtcgagtgcc
     2401 cggtcgatct tctctacgac gagaagctca ttcgcggctg gtatgccgat gcggccggca
     2461 agggcatggc gatcgccgac cgggcgctgc gctggtatct cgagcgccac gccgccagga
     2521 tgttcgcggg cagcggcgtg gcgtacgcgc cggttgggcg cgcggtggcc gtcgggcaag
     2581 cgagcgaggc tgccgtcgca agggcagccg aggcgttcac gaaggccgag cgtccgctgc
     2641 tggtgatcgg cagccagacg ctggtcgaag catcggaggc cgcgatggtc gccgccgccg
     2701 tcgatcgctt gggcgtgccg gtctatctct cgggcatggc gcgcgggctg ctgggccgcg
     2761 acgcgagcct gcagatgcgc cacgcccgcc ggcaggcgct gcgcgagtcc gactgcgtgt
     2821 tgctcgccgg cgtgccttgc gatttccggc tcgactacgg tcggcacgtg cgccgctccg
     2881 cgacgctggt cgcggcaaac cgcagccctc gggatgcgcg gctgaaccgc aagccctcga
     2941 tcgaggcgat cggcgacgcc gggcgattca tcgcggcgct cgccgatcgc gtcggcgaaa
     3001 gagcgaagcg cccggagtgg atcgtcgccc tcgacaagcg cgacgccgag cgcgaagccg
     3061 agatcgacgc ccaggccagg cttcccggcg ggcacgtgaa cccggtcggg ttcttccgcg
     3121 cgctcgatcg cgcggcgggc gacggcgcga tcttcgtcgc cgacggtggc gatttcgtcg
     3181 cgaccgcgtc gtacatcctg cggccgcgcg gtccgctcgc gtggctcgac ccgggcgcat
     3241 tcggcaccct gggcgtcggc gccggattcg cgctcggcgc cgcggccgta cggccccgct
     3301 ccgaggtctg gctcgtctgg ggcgacggcg cctgcggcta cgggctcgcc gaattcgaca
     3361 ccttcgtgcg ccacggcatg ccggtcatcg cggtggtcgg caacgatgcg ggctggaccc
     3421 agatcgcgag agagcaggtg aagatgctcg gtgacgacgt cggcacggtg ctctcgcgca
     3481 ccgcctacca cgaggtggcg cgaggcttcg gcgccg
//
LOCUS       DASVHM010000583         2057 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_835815, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000583 DASVHM010000000
VERSION     DASVHM010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_835815"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(107..>2057)
                     /locus_tag="VF308_10935"
     CDS             complement(107..>2057)
                     /locus_tag="VF308_10935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437217.1"
                     /translation="RFDWVPTPQIVAASNLTAFLRKVDLPDYETLLARSQADPAWLMQ
                     QVFEFCDMRFYEPYTRLLDTSDGIEWAHWCIGATTNIVLNCLDRHRGSTTWDQTFLVW
                     EGEDPAEQRALTYREFDAEVCRLAGALRSLGVGRGDVVGLYMPSLPETYVAFFAVLKI
                     GAILMPLFSGFGPVPLATRLRDGEARVVLTADGTWRRGSPAAMKPVLDEALAEVTGVR
                     HVVVLRRMGAALETPMRAGRDHDWHALTASMPAEIPTEPMPAEAAAILLYTSGTTGKP
                     KGCVWTHVSFLGSMVTRDVHLCGDFKPTDRYFFMSDMGWMVGAMCACIPSYFGASLLV
                     AEGVPDHPDTDRYWRLVESHRVTYLGVSPTLVRGLMRHGHAEVERRDLSALRITCSGG
                     EAWTEAPWHWFFDHVCKRRIPIINISGGTEVGGCIFTGTVHHPLRPGSFAGPALAVGA
                     DIVDDEGRTLPPGRVGELVLRLPSIGMTKGLWRDPERYLDTYWRTLPGVWVHGDFARR
                     DEDGLCYIVGRSDDTIKISGKRTGPSEIESLLMSTGTISEAAAIGVPDELRGSAIVCV
                     CVPMPGVAADAALERQLSSAVETGMGASYRPRRVLLVSDLPKTRNMKVMRRVVRAVYQ
                     GSEPGDLSALVNPESVNELRDRLAG"
BASE COUNT          329 a          694 c          737 g          297 t
ORIGIN      
        1 atgcaaaccc ggcatgacgg cgtgagcggc gagcgcccga ttcgcgcctg aggtctcgtc
       61 ggctatccgt gaacgaaccg atccggtccg caagggccgc tgaacttcag cccgcgagcc
      121 ggtcgcgcag ctcgttcacc gactcggggt tgacgagggc cgacaggtcg cccggttcgc
      181 tgccctggta gacggcacgt acgacgcgcc gcatcacctt catgttgcgg gtcttcggca
      241 ggtccgagac gagcaacacc cggcgcggcc ggtacgaagc gcccatgccg gtttcgacgg
      301 cggacgacag ctgccgctcg agtgccgcgt cggccgccac gcccggcatc ggcacgcaca
      361 cgcagacgat cgccgagccc ctgagctcgt cgggcacgcc gatcgcggcg gcttccgaga
      421 tcgtgcccgt cgacatcaag aggctctcga tctcggacgg gccggtgcgc tttccggaga
      481 tcttgatcgt gtcgtcggag cggccgacga tgtagcagag cccgtcctcg tcgcgccgtg
      541 cgaagtcgcc gtgcacccag acacccggca gcgtgcgcca gtaggtgtcc agataacgct
      601 cggggtcgcg ccacaggcct ttcgtcatgc cgatgctggg caggcgcagg actagttctc
      661 cgacccggcc cggcggcagc gtgcggcctt cgtcgtcgac gatgtcggcg ccgaccgcga
      721 gcgcggggcc ggcgaacgaa ccgggccgca gcgggtggtg cacggtgccg gtgaagatgc
      781 agccgccgac ctcggtgccg ccggagatgt tgatgatcgg gatgcgccgc ttgcacacgt
      841 ggtcgaagaa ccagtgccag ggcgcctcgg tccaggcctc gccgcccgag caggtgatgc
      901 gcaatgccga gagatcgcgg cgctcgactt ctgcgtggcc gtggcgcatc agcccgcgca
      961 ccagcgtcgg cgagacgccc aggtaggtga cgcgatgact ctcgacgagg cgccagtagc
     1021 ggtcggtgtc ggggtggtcg ggcacgccct cggccacgag caggctggcg ccgaagtagc
     1081 tcgggatgca ggcgcacatc gcgccgacca tccagcccat gtcgctcatg aagaaatagc
     1141 ggtcggtcgg cttgaagtcg ccgcacaggt gcacgtcgcg cgtgaccatc gacccgagga
     1201 agctcacgtg cgtccagacg cagcccttcg gcttgcccgt ggtgcccgag gtgtagagca
     1261 ggatcgccgc ggcctcggcc ggcatcggct cggtgggaat ttcggccggc atcgacgcgg
     1321 tgagcgcatg ccagtcatgg tcgcgcccgg cgcgcatcgg cgtctcgagt gcggcgccca
     1381 tgcgccgcag cacgaccaca tggcggacgc cggtcacttc ggcgagcgct tcgtcgagca
     1441 ccggcttcat cgcggccgga ctgccgcggc gccaggtgcc gtcggcggtg aggacgacgc
     1501 gggcctcgcc gtcgcgcagc cgggtcgcga gtggcacggg gccgaagccg gaaaagagcg
     1561 gcatcaggat cgcaccgatc ttcaacaccg cgaagaaggc gacataggtc tcgggcaggc
     1621 tcggcatgta gaggccgacc acgtcgccgc ggccgacgcc gagcgagcgc aacgcgccgg
     1681 cgagacggca gacctcggca tcgaactcgc gataagtgag ggcgcgttgc tccgccgggt
     1741 cctcgccctc ccagaccagg aaggtctggt cccaggtggt gctgccgcgg tgccggtcga
     1801 ggcagttcag cacgatgttg gtcgtggcgc cgatgcacca gtgcgcccat tcgatcccgt
     1861 ccgaggtgtc gagcaggcgc gtgtacggct cgtagaagcg catgtcgcag aactcaaaca
     1921 cctgctgcat cagccaggcc gggtcggcct gcgagcgggc gagcagcgtc tcgtagtcgg
     1981 gcaggtcgac cttgcgcagg aacgccgtca ggttgcttgc agcgacgatc tgcggcgtcg
     2041 gcacccaatc gaaccga
//
LOCUS       DASVHM010000584         3019 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_257752, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000584 DASVHM010000000
VERSION     DASVHM010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3019
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257752"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1207)
                     /gene="hemA"
                     /locus_tag="VF308_10940"
     CDS             complement(<1..1207)
                     /gene="hemA"
                     /locus_tag="VF308_10940"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEX7437218.1"
                     /translation="MSVFALGLNHTTAPVDLRGRFTFAPEQLAATLQAFRARLQRADE
                     VAIVSTCNRTEVYVGAAPSLVAPAIDWLADVGGVASQTLRTHAYVLEGSSAARHAFRV
                     ASGLDSMVLGEPQILGQLKQAVREADSAGTLGTTLQQMFQRSFAVAKEVRSSTEIGSH
                     SISMAAAAVRLAAQLFEDMRETKVLFVGAGEMIELAATHFAARNPQAMAVANRTLDRG
                     ERLAQRLGAEAMRLADLPARLAEFDVVVSCTASSLPIIGLGAVERALKLRKHRPMFMV
                     DLAVPRDIEPEVARLSDVYLYTIDDLSAHVQRAGERREAAVAQAEAIIEIGVQSFVHW
                     LDRRGSIPLIQALHAQTDDWRAIEIARAKKLLANGEDVGAVLESLSRGLTQKMLHGTL
                     AELRGAEGEQ"
     gene            complement(1580..2962)
                     /gene="miaB"
                     /locus_tag="VF308_10945"
     CDS             complement(1580..2962)
                     /gene="miaB"
                     /locus_tag="VF308_10945"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEX7437219.1"
                     /translation="MTVSAAPRKKVWIKTFGCQMNEYDSARMADVLQAARGYEPTTDV
                     EEADLILFNTCSVREKAQEKVFSDLGRIKHLKARGALIGVGGCVASQEGATIIERAPY
                     VDVVFGPQTLHRLPELLDRRRAENRAQIDIRFPEIEKFDHLPPARVEGPTAFVSIMEG
                     CSKYCSYCVVPYTRGEEFSRPFDDVLVEVAGLADRGVREVTLLGQNVNAYRGRMGNGA
                     EIADFALLLECVGAIAGIERIRYTTSHPNEFTQRLVEAYTKVPKLVGHLHLPVQHGSD
                     RILMAMKRGYTAMEYKATVRKLRAARPGICISSDFIVGFPGETEDDFARTMKLIDDMG
                     FDHSFSFVFSPRPGTPAAALADETAPALKLKRLQHLQAAVEANGNRISASRVGTVQRI
                     LVEGPSKKDAGELMGRTECNRVVNFAGPARLIGAMVDVTISEVRGHSLRGNVVATASL
                     ETAENQTTTG"
BASE COUNT          461 a         1004 c         1016 g          538 t
ORIGIN      
        1 gctgctcgcc ttcggcaccg cgtaattccg caagcgtgcc gtgcagcatc ttctgcgtca
       61 ggccgcgtga cagcgattcg agcaccgcgc ccacgtcttc gccgttggcg aggagtttct
      121 tggcgcgggc gatctcgatg gcgcgccagt cgtcggtctg cgcgtgcaag gcctggatca
      181 gcgggatcga gccacgccgg tcgagccagt gcacgaagct ctgcacgccg atctcgatga
      241 tcgcctcggc ctgcgccacc gcggcctcgc gccgttcgcc ggcgcgctga acgtgcgccg
      301 aaagatcgtc gatggtgtag agatagacgt ccgagaggcg cgccacttcg ggctcgatgt
      361 cgcgcgggac cgcgagatcg accatgaaca tcggtcggtg cttgcgcagc ttcagggcgc
      421 gctcgaccgc gcccaggccg atgatcggca gcgagctcgc ggtgcaggag acgacgacgt
      481 cgaattcggc gagccgtgcg ggcagatcgg cgaggcgcat ggcttcggca ccgagccgct
      541 gcgccagccg ttcaccgcga tcgagggtcc ggttggcgac cgccatcgcc tgcggattgc
      601 gcgccgcgaa atgggtcgcg gcgagttcga tcatttcgcc ggcgcccacg aaaagcacct
      661 tcgtctcgcg catgtcttcg aagagttgcg cggcgagccg cactgcggcg gccgccatgc
      721 tgatcgagtg ggagccgatc tcggtcgagc tgcgcacttc cttggccacc gcgaacgagc
      781 gctggaacat ctgctgcaag gtcgtgccga gcgtgccggc gctgtcggcc tcgcgcacgg
      841 cctgcttcag ctggccgagg atctgcggct cgcccagcac catcgaatcg agcccgctcg
      901 cgacccgaaa cgcatgccgc gccgccgaac ttccttcgag cacataggca tgggtgcgca
      961 aggtctggct cgcgacgccc ccgacgtcgg cgagccaatc gatcgcgggc gcgaccagcg
     1021 aaggcgcggc gccgacgtac acctcggtgc gattgcaggt cgacacgatc gcaacctcgt
     1081 cggcgcgctg caggcgcgcg cggaacgcct gcagcgtggc tgccagctgc tcgggcgcga
     1141 acgtgaaccg gccgcgcaga tcgaccggcg cggtcgtgtg gttcaggccg agggcgaaaa
     1201 cgctcatcgg gtgattataa aattgagact catcgatagg cgcgaagcgg gcgcacgctg
     1261 atcctagagg catcgcagcc gatccggttc ccgcctcgac gacaaaagat tgcgcctcgt
     1321 caacaaaagg atgccggtct ggaaccgttc gacgccttct ggcatctgct gaacttcttc
     1381 gcgccggcgg ccggcattgg tctcgtcgcc tcgaccctgg ccaaactcat ctggcgttcc
     1441 gaattgcagc gggtcggctg gtcgcgcctt tgcgggatca caatcggttc tgccgcggcg
     1501 gtgctggtcg ccggcctcgt gctgctcggc cacgacggcc gtatggccac ctacgcggcg
     1561 atgattgccg tcgtggctct cagcctgtgg tggtttggtt ttcggccgtt tcgaggctag
     1621 cggtggctac gacattgccg cgcagggaat gccctcgcac ttcggaaatc gtcacgtcga
     1681 ccattgcccc gatcagccgc gccgggccgg cgaagttaac gacgcggttg cattcggtgc
     1741 gccccatcag ctcgcccgca tccttcttcg aaggcccttc gaccaggatc ctctgcaccg
     1801 tgcccacgcg cgacgcgctg atccggttgc cgttggcttc gacggctgcc tgcaaatgct
     1861 gcaggcgctt gagtttcagc gccggcgccg tctcgtcggc gagcgccgcg gccggtgtgc
     1921 cggggcgcgg gctgaagacg aagctgaagc tgtggtcgaa gcccatgtcg tcgatcagct
     1981 tcatcgtacg cgcgaagtcg tcctcggtct cgcccgggaa gccgacgatg aagtcgctcg
     2041 agatgcagat gccgggtcgc gcggcgcgga gcttgcggac cgtcgccttg tattccatcg
     2101 ctgtgtagcc acgcttcatc gccatcagga tccggtcgct gccgtgctgg accggcaggt
     2161 gcagatggcc gaccagcttc ggcaccttcg tgtaggcctc gacgagacgc tgcgtgaatt
     2221 cgttcgggtg actggtcgtg tagcggatcc gctcgatccc ggcaatcgcg ccgacgcatt
     2281 cgagcagcaa tgcgaagtcg gcgatctccg cgccgttgcc catgcgtccg cggtacgcgt
     2341 tgacgttctg gccgagcagc gtgacttccc tcacgccccg gtcggcgagg cccgccactt
     2401 cgaccagcac gtcgtcgaac gggcgtgaga actcttcgcc gcgcgtgtag gggacgacgc
     2461 agtagctgca gtacttggaa cacccctcca tgatcgagac gaaggcggtc ggcccctcga
     2521 cccgggccgg cgggagatga tcgaacttct cgatctccgg gaaccggatg tcgatctggg
     2581 cccggttctc cgcgcggcgc cggtcgagga gctcgggcag acggtgcagc gtctgcggtc
     2641 cgaagaccac gtccacatag ggagcgcgtt cgatgatcgt ggcgccctcc tggctcgcga
     2701 cgcatccgcc gactccgatc agggcgcccc tggccttcag gtgcttgatc cggccgaggt
     2761 cgctgaagac cttttcctgc gccttctcgc gcaccgagca ggtgttgaag aggatcaggt
     2821 ccgcctcttc gacatcggtg gtcggctcgt agccccgggc ggcctggagc acatcggcca
     2881 tcctcgccga gtcgtactcg ttcatctggc agccgaaggt cttgatccag acctttttcc
     2941 gcggggcagc ggaaacggtc atgggcgggt ccaggtctgc gcgaccgggt cgaagagcca
     3001 gtcctgagcc tgtggcggc
//
LOCUS       DASVHM010000585         3347 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_185259, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000585 DASVHM010000000
VERSION     DASVHM010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3347
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185259"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(293..448)
                     /locus_tag="VF308_10950"
     CDS             complement(293..448)
                     /locus_tag="VF308_10950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009666333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3096 domain-containing protein"
                     /protein_id="HEX7437220.1"
                     /translation="MNLSLSIGPLVSLIAGILILIVPRLLNFIVAIYLIVIGLLGLFG
                     AGNFKLH"
     gene            complement(486..1097)
                     /locus_tag="VF308_10955"
     CDS             complement(486..1097)
                     /locus_tag="VF308_10955"
                     /inference="COORDINATES: protein motif:HMM:NF012260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta/gamma crystallin-related protein"
                     /protein_id="HEX7437221.1"
                     /translation="MNAGRTLRTTAIAVFGCVAAMLAGAAEITLYEHPGFAGGQLTLR
                     GYTPNIANTGFNDKASSIVVASGRWEVCTDADFKGTCVTLTRGEYPALDRRLNDRISS
                     ARETGSFGENRGSYNDYGRGAIELFAQPDFRGPSLRLDRDSAALDASGFNDRASSVIV
                     GSGTWELCSDNGFGGNCRTYAPGRYADLGYGMARQLSSVRHTQ"
     gene            1396..2619
                     /locus_tag="VF308_10960"
     CDS             1396..2619
                     /locus_tag="VF308_10960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007856577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEX7437222.1"
                     /translation="MSPATVVVLLTLLLGIQPITTDLYLPALPTVQRELGANVGTAQF
                     TLSALIICFGFSQLVCGPLADRFGRRPVLLSGLALYTVASLFGAAAQGIAALIVWRAL
                     QGVAMAAAVTCGRSIVRDLFEPGDGARMMSRALSGLGLIAALCPLIGGFLVERVNWHA
                     ALLALALFGAGTLAFVAGRFEETIPTRNPGATRLRTLLLNWGEVLANPTFRAWAALSA
                     CTYGGLFFLLAGSSFVFIDVLGMSRLAYGAVLSSASVAYLVGTIWCRRLLVRHGLRGA
                     VKRGACFTLAGGVTMAALSLAGVHTVWAIVLPQYLFAIGHGVHQPCGQAGAVGPFPEK
                     AGTAASLSGFAMTLSALLVGLWLGHSLDGTVYPLTLGIGAVSIVLALVAWTLVQRHGE
                     PGRMPLACAPGTRTA"
     gene            2642..>3347
                     /gene="miaA"
                     /locus_tag="VF308_10965"
     CDS             2642..>3347
                     /gene="miaA"
                     /locus_tag="VF308_10965"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010463974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEX7437223.1"
                     /translation="MPAPRYLCLAGPTASGKTAAALAIAEALQRIRPVEIVSVDSALV
                     YRGMDIGTAKPSVEERACVPHHLIDIVDPADAYSAARFVVDAQRLIAEIDARGAIALL
                     VGGSMLYFKALFDGLDELPAADTAIRAELSERAAREGWPALHAELARVDPTTAARLAP
                     ADSQRIQRALEVYRVSGEPISARQTRTRAAEHPPLLALEPRDRAWLHARIEARFAAML
                     IAGLVDEVHALRRRPDL"
BASE COUNT          477 a         1196 c         1110 g          564 t
ORIGIN      
        1 gccgccgaca gcacaacaga cttctcggcg gaacggggct ttcagattgc acactggtcg
       61 cgcagcggca tgaaccattg ggtgatttcg gacgtgaacc gcgaagagtt catgaccatc
      121 gttcgggggc tggagtcgat cgacgaccaa cgctagtcca ggcgacgcgg aacccgaaat
      181 cccctccatc aaaacaccaa gaagacttct tcaggcgaac tcctgcagtg cgtcgaatga
      241 cgcctcgggg tcgatcgaat caatctgatg gcgccgcgcc ggcgcgccct gctcaatgca
      301 gcttgaagtt tccggcgccg aaaaggccga gcaggccgat cacgatcaga tagatcgcga
      361 cgatgaaatt gaggaggcgc ggcacgatca ggatcaggat gcccgcgatc agtgaaacca
      421 gggggccgat gctcagggac aggttcatgg catgctctcg ttggattgga agggccgctg
      481 cgcgctcact gggtgtggcg caccgaagac agttgccggg ccatgccgta gccgaggtcg
      541 gcgtagcgac cgggggcgta ggtccggcag ttgcccccga atccgttgtc ggaacacagt
      601 tcccaggtgc cgctgccgac gatgacactc gaggcgcgat cgttgaagcc gctggcgtcg
      661 agcgccgcgg agtcgcgatc gaggcgcagc gagggaccgc ggaagtccgg ctgggcgaac
      721 aactcgatcg cgccccgacc gtagtcgttg tagctgccgc gattctcgcc gaagctgccg
      781 gtctcgcgcg ccgagctgat gcgatcgttc aggcgccggt cgagggcggg atactcgccg
      841 cgcgtcagcg tcacgcaagt gcccttgaag tcggcatccg tgcagacctc ccaccgcccc
      901 gacgcgacga cgatgctcga ggccttgtcg ttgaagccgg tgttggcgat gttgggcgtg
      961 tatccgcgca gcgtgagctg cccgcccgcg aaccccgggt gctcgtacag ggtgatctcg
     1021 gccgctccgg cgagcatggc ggccacgcac ccgaagacgg cgatcgccgt ggttcgcagc
     1081 gttcgaccag cattcatttc cgactcctct ttccttgccc tcacaccggc ttcggttcgc
     1141 catcttcgac gcgcactctc atgtcgatcg agaaggcggg ttcggtggcc tacgagatcg
     1201 cccgggtgcc ggtgctgcag cgtcgcacct tgcgagacgg atagggcccg gacagcggcg
     1261 gtcccgcgcg tggttgccga ccgcatgccg ccgtgggccg gctcctacat cgatgcgctc
     1321 cccaagccgg tcaaggctgt gggcaggccc tgctaccctt ggcgcatggc cgtttcgtac
     1381 gccgcgcctc ggcacatgtc tcccgcaacc gtcgtcgtgc tactcacgct gctgctcggc
     1441 attcagccga tcacgaccga cctctacctg ccggcgctgc cgaccgtgca gcgcgaactc
     1501 ggcgccaacg tcggcacggc gcagttcacg ctctcggcgt tgatcatctg cttcggcttt
     1561 tcgcaactcg tctgcggccc gctcgccgac cggttcggac ggcgcccggt gctgctgagc
     1621 ggactcgcgc tctatacggt agcaagcctg ttcggcgccg ccgcgcaagg catcgcggcg
     1681 ctgatcgtct ggcgcgcgct gcaaggggtc gccatggcgg cggcggtgac ctgcggccga
     1741 tcgatcgtcc gcgacctgtt cgagccaggc gacggcgcgc gcatgatgtc gcgcgcactg
     1801 tcgggcctgg gcctgatcgc ggcgctctgc ccgttgatcg gcggctttct cgtcgagcgc
     1861 gtgaactggc acgccgccct gctggcactg gcgctcttcg gcgccggcac gctcgccttc
     1921 gtcgccgggc gcttcgaaga gacgatcccg acgcgaaacc ccggcgccac gcgcctgcgc
     1981 accttgctgc tcaactgggg cgaagtcctg gcgaacccga cctttcgggc ctgggccgca
     2041 ctctccgcgt gcacttatgg cggcctcttc ttcctgctcg ccgggtcgtc gttcgtcttc
     2101 atcgacgtgc tcggaatgtc gcgattggcc tacggcgccg ttctctcgtc ggcatcggtc
     2161 gcctacctcg tcggcacgat ttggtgccgg cgcctgctcg tacgccacgg cctgcgcggc
     2221 gccgtcaagc gcggcgcgtg cttcacgctc gccggcggcg tgacgatggc cgccctcagc
     2281 ctcgccggcg tgcacacggt gtgggccatc gtgctgccgc agtacctgtt cgcgatcggc
     2341 cacggcgtgc accagccctg tggccaggcc ggcgccgtgg gtcctttccc cgaaaaggcg
     2401 gggaccgcgg cctcgctctc cggctttgcg atgacactgt ccgcgctcct cgtcggtctc
     2461 tggctcggtc acagcctcga cggcaccgtc tacccgctga ccctgggcat cggcgcggtc
     2521 agcatcgtgc tcgcgctcgt cgcctggacg ctggtgcagc gccacggcga acccgggcgc
     2581 atgccgctcg cgtgtgcgcc gggcacgcgc accgcttgac tcggtcgacg cgagtcgcgc
     2641 catgcccgct ccgcgctatc tgtgcctcgc cggaccgacc gcatccggca agaccgcggc
     2701 cgcactcgcg atcgccgaag ccctgcagcg catccgcccg gtcgagatcg tcagcgtcga
     2761 ctcggccctg gtctaccgcg gaatggacat cggcacagcg aagcccagtg tggaagagcg
     2821 agcgtgcgtc ccgcaccact tgatcgacat cgtcgatccg gccgacgcat attcggccgc
     2881 gcgcttcgtc gtcgacgcgc agcgcctcat tgcggagatc gacgcgcgcg gcgcaatcgc
     2941 gttgctggtc ggaggcagca tgctctactt caaggccctg ttcgacggcc tcgacgagct
     3001 gccggccgcc gacactgcga ttcgcgccga gctgagcgag cgcgccgcgc gcgaaggctg
     3061 gcccgcgttg cacgccgagc tcgcccgcgt cgaccctacc accgccgcgc gcctggcgcc
     3121 cgccgactcg cagcgcatcc agcgcgcgct cgaggtgtac cgggtcagcg gcgagccgat
     3181 ctcggcgcgt cagacgcgca cgcgcgcagc cgaacacccg ccgctgctcg cgctcgagcc
     3241 gcgcgaccgc gcctggctgc atgcccgcat cgaagcgcgc ttcgcggcga tgctgatcgc
     3301 cggcctcgtc gacgaggtgc atgccctgcg ccggcgtccg gacctgc
//
LOCUS       DASVHM010000586         1925 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_909948, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000586 DASVHM010000000
VERSION     DASVHM010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1925)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1925)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_909948"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..>1925
                     /locus_tag="VF308_10970"
     CDS             22..>1925
                     /locus_tag="VF308_10970"
                     /inference="COORDINATES: protein motif:HMM:NF017930.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEX7437224.1"
                     /translation="MAELVRLSPEAPNAPDAPWDMSASTARGDALRDLAERAGAMAEM
                     DYGFLYDRGRHLLAIGYNVDDRRRDTGHYDLLASEVRLTSFVAIAQGHIPQESWFALG
                     RQLATVDARKVLLSWSGSMFEYLMPMLVMPSYEDTLLDETMRGAVARQIHYGKQRGVP
                     WGNSESGYNLTDAHLNYQYRGFGVPGLGLKRGLAEDLVVAPYASMMALMVDPKAAVQN
                     LQRLADEGVAGTFGYYEAVDYTASRLPRGEARVIVRSYMAHHEGMSLLALAYLLLDRP
                     MQRRFETDARLQATLLLLQERVPKAVAFHHVVPEHGAIRGGLPGAETPLRLITTPDTA
                     SPETQLLSNGRYHVMLTNSGGSYSRWRDIAVTRWREDGTADAWGSFCYLRDTETGTFW
                     STTHHPTQWRSDHYEAIFSEGRAEFRRRDQGIDAYTEVVVSPEDDIELRRLRLTNLSR
                     VRRSIEVTSYTEVVLATAASDAQHPAYSNLFVQTEILADPAAILATRRPRSAEEQPPW
                     MFHAIAVHGAAAGPASHETDRARFIGRGRSLHAPAALRDPAPLSGSAGSVLDPIAATR
                     RTIVLEPEQTAIVDIIYGAAESREACLGLVKKYMDRRLADRVFELVWTHSQVILRQLN
                     ATEADTQIYAR"
BASE COUNT          308 a          708 c          632 g          277 t
ORIGIN      
        1 ctcgaccaat gcgaagcggc cgtggccgaa ctcgtgcggc tgtcgcccga ggcgccgaac
       61 gcacccgatg cgccctggga catgtccgca tcgacggcgc gcggcgacgc cctgcgcgat
      121 ctcgccgaac gtgccggcgc gatggcggag atggactacg gattcctcta cgaccgcggg
      181 cgccatttgc tcgccatcgg ctataacgtc gacgaccggc gccgcgatac gggccactac
      241 gacctgctcg cctccgaagt ccggctgacc agcttcgtcg cgatcgcgca ggggcatatc
      301 ccgcaggaga gctggttcgc gctcggccgc cagctcgcga cggtggatgc gcgcaaggtg
      361 ctgctctcct ggagcggctc gatgttcgag tacctcatgc cgatgctggt gatgccgagc
      421 tacgaggaca cgctgctcga cgagaccatg cgcggcgcgg tcgcgcgcca gatccactac
      481 ggcaagcagc gcggcgtgcc ctggggcaat tcggagtcgg gctacaacct caccgacgcg
      541 catctcaact atcaataccg cggcttcggc gtgccggggc tcggactcaa gcgcggcctg
      601 gccgaagacc tcgtcgtcgc accgtatgcc tcgatgatgg cgctgatggt cgatccgaag
      661 gccgccgtgc agaacctgca gcggcttgcc gacgaaggcg tcgcgggcac cttcggctac
      721 tacgaggccg tcgattacac cgcgtcgcgc ctgccgcgcg gcgaggcccg cgtgatcgtc
      781 cgttcataca tggctcacca cgagggcatg agcctgctgg cgctcgccta tctgctgctc
      841 gaccgtccga tgcagcggcg cttcgagacc gacgcgcgcc tgcaggccac gctgctgctg
      901 ctgcaggagc gcgtgcccaa ggccgtcgcg ttccaccacg tggtgcccga gcacggcgcc
      961 atccgcggcg gcctgccggg cgccgagacg ccgctgcgcc tcatcaccac gccggacacg
     1021 gcatcgccgg aaacgcagtt gctctcgaac ggccgctatc acgtcatgct cacgaattcg
     1081 ggcgggagtt acagccgctg gcgggacatc gccgtgacgc gctggcgcga agacggcacc
     1141 gccgatgcgt gggggagttt ctgctacctg cgcgacaccg agacgggcac cttctggtcg
     1201 acgacgcacc acccgacgca gtggcggtcc gaccactacg aggccatctt cagcgaagga
     1261 cgcgccgagt tccggcgccg cgaccagggc atcgacgcct acaccgaggt cgtcgtctcg
     1321 cccgaagacg acatcgaact gcggcgcctg cgcctcacca acctgagccg cgtgcggcgc
     1381 agcatcgagg tgacgagcta caccgaggtg gtgctcgcga cggcggcctc cgatgcgcag
     1441 catccggcct acagcaacct cttcgtgcag accgaaatcc tcgccgaccc tgcggccatc
     1501 ctcgccacgc gccggccgcg ctcggccgag gagcagccgc cctggatgtt ccacgcgatc
     1561 gcggtccacg gcgcggcggc cggacccgcc tcgcacgaga ccgatcgggc gcgcttcatc
     1621 ggccgcggcc gcagcctcca tgcgcccgcg gcgctgcgcg atccggcgcc gctttccggc
     1681 agcgcgggct cggtgctcga cccgatcgcc gcgacgcggc gcacgatcgt gctcgaaccg
     1741 gaacagacag ccatcgtcga catcatctac ggcgcggccg agagccgcga ggcctgtctc
     1801 ggcctggtta agaaatacat ggaccggcgt ctcgccgacc gcgtgttcga gctcgtctgg
     1861 acccacagcc aggtgatcct gcgccagctc aacgcgaccg aggccgacac ccagatctac
     1921 gcccg
//
LOCUS       DASVHM010000587         1601 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_692194, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000587 DASVHM010000000
VERSION     DASVHM010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_692194"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            34..1173
                     /locus_tag="VF308_10975"
     CDS             34..1173
                     /locus_tag="VF308_10975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011802323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437225.1"
                     /translation="MLLAGLTALGAQAQPSSGPIKIGLMLPYSGTYAALGTAIENGFK
                     LYVQEQGGKLGGREIQYFKVDDESEPSKATDNVNKLIKRDQVDVLVGTVHSGVALAMA
                     KVAKDSKTLLIIPNAGADAITGAMCAPNIVRSSFSNWQPGYAMGVVAGTKNVKRAMTI
                     TWNYAAGAESVKGFAQGLEKSGGKVVKDLNLPFPNVEFQALLTEIAAQKPDAVYAFFA
                     GGGAVKFVKDYAAAGLSKSIPLYGPGFLTDGTLEAQGVAAQGMLTTLHYADNLDTPRN
                     NNFRKAFALTYKANADVYAVQGYDAAQILAAGLKAVGGDLSKRDALTTAMRKTVVDSP
                     RGKFTISAAGNPVQDIYLREVKGNNNEFRGIAVKALADPATGCTM"
     gene            1190..1492
                     /locus_tag="VF308_10980"
     CDS             1190..1492
                     /locus_tag="VF308_10980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007870788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase family
                     protein"
                     /protein_id="HEX7437226.1"
                     /translation="MILEIADIRIQPGKQSDFEAAIQRGVETVITRATGFRGYKVNHG
                     VESPERYVLMIYWEALENHTVDFRKGPLFPAWRAIVGPFFAAPPMVEHFTLVAKSA"
BASE COUNT          300 a          537 c          531 g          233 t
ORIGIN      
        1 agcacacgcc gaaccgccct tgcatccgcc gccatgctgc tggccgggct caccgcgctc
       61 ggcgcgcagg cgcaaccgtc gagcgggccg atcaagattg gcctgatgct tccctactcg
      121 ggcacctatg cggcgctcgg aacggccatc gagaacggct tcaagctcta cgtgcaggag
      181 cagggcggca agctcggcgg ccgcgagatc cagtacttca aggtcgacga cgagtccgag
      241 ccctcgaagg cgaccgacaa cgtcaacaag ctgatcaagc gcgaccaggt cgacgtgctc
      301 gtcggcactg tgcactcggg cgtcgcgctc gcgatggcca aggtggcgaa ggactcgaag
      361 acgctgctga tcattccgaa cgccggcgcc gatgcgatca ccggtgccat gtgcgccccg
      421 aacatcgtgc gcagctcgtt ctcgaactgg cagccgggct atgcgatggg cgtcgtcgcc
      481 ggcacgaaga acgtgaagcg ggcgatgacg atcacctgga actacgcggc cggtgccgaa
      541 tcggtgaagg gcttcgccca agggctcgag aagagcggcg gcaaggtcgt gaaggatctg
      601 aacctgccgt ttccgaacgt cgagttccag gccctcctga ccgagatcgc ggcgcagaag
      661 cccgatgccg tgtatgcgtt cttcgccggc ggcggcgccg tcaagttcgt gaaggactat
      721 gcggctgcgg gcttgagcaa gtcgatcccg ctgtacggcc cgggcttcct caccgacggc
      781 acgctcgagg cgcagggcgt ggcggcgcaa ggcatgctga ccacgctgca ctacgccgac
      841 aacctcgaca cgccgcgcaa caacaacttc cgcaaggcct ttgcgctgac ctacaaggcc
      901 aacgccgacg tctacgcggt gcagggctac gacgcggcgc agatcctcgc ggccggcctc
      961 aaggcggtgg gcggcgacct ttccaagcgc gacgccttga ccacggcgat gaggaagacc
     1021 gtggtcgaca gcccgcgcgg caagttcacg atctcggccg ccggcaaccc agtgcaggac
     1081 atctacctgc gcgaggtcaa gggcaacaac aacgagttcc gcggcatcgc cgtgaaagcg
     1141 ctcgccgacc cggccaccgg ctgcacgatg tgagcgcgag gagccgcacg tgattctcga
     1201 gatcgccgac atccgcatcc aacccggtaa gcagtccgac ttcgaggccg cgattcaacg
     1261 cggggtcgaa acggtgatca cccgggccac ggggtttcgc ggctacaagg tgaaccatgg
     1321 cgtcgaatcg cccgagcgct acgtgctgat gatctactgg gaggcgctcg agaaccacac
     1381 agtcgacttc cgcaaagggc cgctcttccc cgcgtggcgc gcaatcgtcg gcccgttctt
     1441 cgcggcgccg ccgatggtcg agcactttac gctggtcgcc aaatcggcct gacgacggcg
     1501 cggcgcggcg cggcgtggca aatgccgcgc cggcgcgggg ctgcccgaag gcttgtgcgc
     1561 gcgagagccc gaatgctggg acaatagacg cccttgaccc g
//
LOCUS       DASVHM010000588         6360 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_620428, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000588 DASVHM010000000
VERSION     DASVHM010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6360
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_620428"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..315)
                     /locus_tag="VF308_10985"
     CDS             complement(<1..315)
                     /locus_tag="VF308_10985"
                     /inference="COORDINATES: protein motif:HMM:NF024952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-5' RNA ligase family protein"
                     /protein_id="HEX7437227.1"
                     /translation="MSQSAFIVRVPEAEPYVAALRERLDPSARLGLPAHVTLLYPFMA
                     PERIGGAVLERARALAASSAPFAYRLAGIRRFPGVLYLSPQPSAPFVELTLRLAREFP
                     EHP"
     gene            complement(320..757)
                     /locus_tag="VF308_10990"
     CDS             complement(320..757)
                     /locus_tag="VF308_10990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019576836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX7437228.1"
                     /translation="MIEVTPLLPEDRARWEVLARGYKTFYKTTLPSADYELAWRRLMT
                     ADTVHGLGAQLDGRLVGIAHYLFHPSAWMNDVCYLQDLFVDVAVRGHGVARALIGRVA
                     EAASARGAPRLYWLTAQDNRVARALYDKVAQTKGFIRYDHPLE"
     gene            complement(775..1494)
                     /locus_tag="VF308_10995"
     CDS             complement(775..1494)
                     /locus_tag="VF308_10995"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7437229.1"
                     /translation="MATFLVVHGAWSAGWAWKKMRPLLRERGHEIFTPTHTGLGERSH
                     LARPEIDLEAHIADILGVLQFEDLRDLILVGHSYGGMVATGVADRAAERIAHLVYLDA
                     FVPRDGQSLFDLAGAAARERGLEAARTGGDGWRVPPNPMPPDTSAADLAWAAPRRMMQ
                     PLKTFEQALRLTGAVERLPRTYIYCTRPGPGDAFRQFSDRARTEPGWRCHELDASHNP
                     HITMPETFAALLDAIAESAKG"
     gene            complement(1511..2551)
                     /locus_tag="VF308_11000"
     CDS             complement(1511..2551)
                     /locus_tag="VF308_11000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine aldolase family protein"
                     /protein_id="HEX7437230.1"
                     /translation="MTIDLRSDTVTRPSAAMRAVMAAAPVGDDQYGEDPSVNALQERV
                     AALLGKEASLWLPSGTMANQVALRVLTRPGDDVIVSRESHAVWHETGGSAANAGVQLT
                     EIGARGVFSAEAFVAAVKPREHGIYPPTTLVEIENTHNRMGGVIFPQPEAERVCAAAR
                     ERGIATFLDGARLWNAAVATGLSTAELARPFDLVAVSLSKGLGAPGGSLLAGPLDLIA
                     RAVRHRRMLGGAMRQVGIFAAAGLHAIEHHMAGLRDDHANARLLAGHLAGSPRIELDL
                     DSVQTNIIVFRLAADGPDAAAVVAAARERGVWVNALGPRTIRALTHRDVTRAQCVTAG
                     AVLVQAVEGRTA"
     gene            complement(2555..2989)
                     /locus_tag="VF308_11005"
     CDS             complement(2555..2989)
                     /locus_tag="VF308_11005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007853975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HEX7437231.1"
                     /translation="MLAIAWLAPLAQAQERANFFDDPFLRVTSGIVDCPVPQGPSITR
                     AQMQAQAHERAERGTSCFQSGRCRLPNAYLYDKEIVPRVKKAVDADGRFDETSVWAEG
                     RRRWVWLKGCVRAIDQSEALELLVRSIDDVEGVVNELVVTER"
     gene            3380..4405
                     /locus_tag="VF308_11010"
     CDS             3380..4405
                     /locus_tag="VF308_11010"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEX7437232.1"
                     /translation="MCALPRASDRQGTLADEKNWLRSWIDETYLRYLEVRGLSAATLD
                     PANSATPIDYFNVLKSPLITTSGNPKDKFHFTYDTPTWVALSQSGIEFGYGFEIALLS
                     AKPPRQAVVAYTDPGTPASPAGIARGATILTVDGLDFVNASIPADVLAINVGLFPKAA
                     GTHTFTIMDLGAPASRTVTLSAAAITKTPVQNVMTLPAPNQGIGYLQFNDHVATSEAQ
                     LLAAIAQLKAAAVTDLVLDIRYNGGGFLDIASELAYMIAGPANTNGKTFERLIFNDKN
                     PFQLTAAHSATPFRNVSQGFSGAAGQPLPFLGLDRVYVLAGPGRACARRAKPSSTACA
                     APACGST"
     gene            4342..4740
                     /locus_tag="VF308_11015"
     CDS             4342..4740
                     /locus_tag="VF308_11015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437233.1"
                     /translation="MRSASEAIVNGLRGAGVRVDLIGGTTCGKPYGFFAADNCNTTYF
                     AIQFHGVNDVGFGDYTDGFAPTCPVADDFNHQLGDPAEGLLSVAIGYRATGTCVRGTA
                     RALSVRPFVAQGEASFVRSPLRENRFYRDR"
     gene            4737..5123
                     /locus_tag="VF308_11020"
     CDS             4737..5123
                     /locus_tag="VF308_11020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437234.1"
                     /translation="MNYRHWRGAAAVVAALWLLGCQAPAVSAEVEAVIVDPGAKSRAE
                     LQRAVSALLGVPSVTLADDALTGSSELLIERSVVRDARGLSITGRDYDRPESFRLFKS
                     GAACVLVHARDGKRAVLAETRCERLK"
     gene            5167..>6360
                     /locus_tag="VF308_11025"
     CDS             5167..>6360
                     /locus_tag="VF308_11025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HEX7437235.1"
                     /translation="MSPHFLHLLMPMLVLLAGCATLPPHVPSPPVHALTDVAGTPLGR
                     IAAASLPSDQPALSGFRLLPEGETAFNARIALARRAQKSLDVQYYLIRNDDLGQQFLR
                     ELRDAALRGVRIRLLVDDLYTAGEDELLTGLAAYANVEVRLFNPLPARAGSFNRRLLF
                     SMHEFGRINHRMHNKLFVADNSFAVSGGRNIAEEYFMRSAKANFIDLDVLSCGPVVRE
                     LSTVFDSYWNSAVVAPIGSVAEPVPPEQARRRFDELVRSAGPRVAERARDVLGRTPVA
                     EQLDSGELTQAFAPARVFADTPDKVAGVERGARGPTVTEQTLGLFASARAEVSIASPY
                     FIPGERGMTFIRSVGATQENGRITLVTNSLGSTDEPLAYAGYARYRLELLKAGVRIRL
                     LVDDLY"
BASE COUNT          950 a         2175 c         2231 g         1004 t
ORIGIN      
        1 cgggtgctcg gggaattcgc gggccaggcg cagcgttagc tcgacgaagg gcgcgctagg
       61 ctggggggag aggtagagca cgcccggaaa gcgccggatc ccggcgaggc ggtaggcgaa
      121 cggcgcgctc gatgccgcga gtgcgcgcgc gcgctcgagc acggcgccgc cgatgcgctc
      181 gggcgccatg aacggataaa gcagcgtgac atgggccggc aggccgagcc gtgccgaagg
      241 atcgagacgc tcgcgcagcg ccgcgacgta tggctcggct tcgggcacgc ggacgatgaa
      301 ggcggattgg ctcacggcct cattcgagcg gatggtcgta gcggatgaag cccttggttt
      361 gcgcgacctt gtcgtagagg gcgcgcgcga cccggttgtc ttgcgccgtc agccagtaga
      421 ggcgcggcgc gccgcgcgcg ctggcggcct cggcgacgcg cccgatcagc gcccgcgcca
      481 cgccatggcc gcgcacggcg acgtcgacga acaggtcttg caggtagcac acgtcgttca
      541 tccatgcgct cggatggaac aagtagtgcg cgatgccgac gaggcggccg tcgagctggg
      601 caccgaggcc gtgcaccgtg tcggccgtca tcagccggcg ccaggcgagt tcgtagtcgg
      661 cgctcggcag cgtcgtcttg tagaaggtct tgtagccgcg cgcgaggact tcccagcgcg
      721 ccctgtcttc ggggagaaga ggggttactt cgatcatgcg catgcgtcca tgcctcagcc
      781 cttcgcgctt tcggcgatgg cgtcgagcag cgccgcgaac gtttccggca tcgtgatgtg
      841 cgggttgtgg ctggcgtcga gctcgtggca gcgccagccc ggctcggtgc gcgcacgatc
      901 ggagaactgc cggaacgcgt cgccgggacc gggtcgggtg cagtagatat aggtgcgcgg
      961 gaggcgctcg accgcgccgg tcagccgcag cgcctgctcg aaggttttca gcggctgcat
     1021 catgcgccgt ggcgcggccc aggcgaggtc agccgcgctc gtgtcgggcg gcatcgggtt
     1081 cggcgggacg cgccagccgt cgccgccagt ccgcgccgcc tcgagtcctc gctcgcgcgc
     1141 cgctgcgccg gcgagatcga agagcgactg gccgtcgcgc ggcacgaagg catcgagata
     1201 gaccaggtgc gcgatgcgct cggcggcgcg atcggccacg ccggtggcca ccatgccgcc
     1261 gtagctgtgg ccgacgagga tcaggtcgcg caggtcttcg aactggagca cgccgaggat
     1321 gtcggcgatg tgcgcctcga ggtcgatctc ggggcgggcc aggtgagagc gctcgccgag
     1381 gccggtgtgc gtcggcgtga agatctcgtg cccgcgctcg cgcagcagcg gccgcatctt
     1441 cttccaggcc cagcccgccg accaggcgcc gtgaaccacg aggaatgtcg ccatgccgct
     1501 ctcctgaacg ctatgcggta cggccttcga cggcctgcac caggaccgct ccagcggtga
     1561 cgcactgcgc gcgtgtcacg tcgcgatggg tgagggcgcg gatcgtccgc ggcccgagtg
     1621 cattgaccca cacgccgcgc tcgcgcgccg ccgcgaccac ggcggccgcg tcggggccgt
     1681 cggccgcgag gcgaaagacg atgatgttgg tctgcacgga gtcgaggtcg agttcgatgc
     1741 gcgggctgcc ggcgagatgc ccggcgagga gccgggcgtt cgcatggtcg tcgcgcaggc
     1801 cggccatgtg gtgttcgatc gcatgcaggc cggccgcggc gaagatgccg acctgccgca
     1861 tcgccccgcc gagcatgcgc cgatggcgca cggcgcgcgc gatcagatcg agcggcccgg
     1921 cgagcagcga gccacccggc gcacccaggc ctttggaaag cgagaccgcg acgaggtcaa
     1981 agggccgggc cagctcggcg gtcgaaaggc ccgtcgcgac ggccgcattc cagagccgcg
     2041 cgccatcgag aaatgtggcg atgccgcgct cgcgcgccgc ggcgcacacg cgctcggcct
     2101 cgggctgggg aaaaatcacg ccccccatgc ggttgtgcgt gttctcgatc tcgaccagcg
     2161 tggtcggcgg gtagatgccg tgctcgcgcg gcttcacggc ggcgacgaag gcctcggcgc
     2221 tgaacacgcc gcgtgcgccg atctcggtga gctgcacgcc ggcgttcgcc gccgagccgc
     2281 ccgtctcgtg ccagaccgcg tggctttcgc ggctcacgat cacgtcgtcg ccgggccgcg
     2341 taagcacgcg cagcgcgacc tggttggcca tcgtgccgct cggcagccag agcgaagcct
     2401 ccttgccgag caacgccgcg acgcgctcct gcaacgcgtt gacgctcggg tcctcgccgt
     2461 actggtcgtc gccgaccggc gccgcggcca tgacggcgcg catcgccgcc gaagggcggg
     2521 tgacggtgtc ggagcgcagg tcgatggtca tcgcctaccg ctcggtcacg accagctcgt
     2581 tgaccacacc ttccacgtcg tcgatcgagc ggaccaggag ttcgagcgct tcggattgat
     2641 cgatggcgcg cacgcagccc ttcagccaga cccagcggcg ccggccttcc gcccagacgc
     2701 tggtctcgtc gaatcggccg tccgcgtcga ccgccttctt gacgcgcgga acgatctcct
     2761 tgtcgtagag gtacgcgttt ggaaggcggc agcgccccga ctggaagcac gaggtcccgc
     2821 gttcggcacg ctcgtgcgcc tgggcctgca tttgcgcgcg cgtgatcgac gggccttgcg
     2881 gcacgggaca gtcgacgatg ccgctggtga cgcgcagaaa cggatcgtcg aagaagttcg
     2941 cgcgctcctg cgcctgggcg agcggggcga gccaggcgat tgcgagcatc ccggctcgga
     3001 cacgggctgg aggcatcgga tggccttcag attctgtcgg acaggagggc cgatgcgatg
     3061 ctcaacgaca aggctgcgat cgatcgaacg ttgcgcatgt tcgctccctt gaagaactcc
     3121 gcgcgacctg aggattcgca ccgcgggcag ggttgaagta tgtcgcaggc tgcgctgagg
     3181 cacattgctc cgctccggac ctttgccagg agcgcagcca tgcgccattc gcccgacacg
     3241 aagagatcgc ggtgcgcctc tgccggcggc gtggccgcgc ttttcctgct cgccagctgc
     3301 ggggggcggc ggcgggggcg gctactcggc gccgcccgac ccttcgtcgg gcctggccgc
     3361 gtcgaccacg tatgcgggct tgtgcgcgct gccgcgggct tcggaccgcc agggaacgct
     3421 cgccgacgag aagaactggc tgcgttcgtg gatcgacgaa acgtatctcc ggtatctgga
     3481 ggttcgcgga ttgagcgccg ccaccctcga cccggccaac tccgcgacgc cgatcgacta
     3541 cttcaatgtc ctgaagtcgc cgctgatcac cacgtcggga aatccgaagg acaagttcca
     3601 tttcacttac gacacgccga cctgggtggc gttgtcgcaa tcgggcatcg aattcggcta
     3661 cggattcgag atcgccttgc tgtccgccaa gccgccgcgc caggcggtgg tggcctatac
     3721 cgaccccggc acgccggcca gcccggccgg catcgcgcgc ggcgcgacga tcctcacggt
     3781 cgacggcctc gatttcgtca acgccagcat ccccgccgac gtccttgcga tcaacgtcgg
     3841 gctcttcccg aaggcggccg gcacgcacac cttcacgatc atggatctcg gcgcgcccgc
     3901 atcgcgcacg gtcacgctga gcgccgctgc gatcaccaag acgccggtgc agaacgtgat
     3961 gacgctgccg gcgccgaacc agggcatcgg ctacctgcag ttcaacgatc acgtcgcgac
     4021 ttcggaggcg cagctgcttg ccgcgatcgc ccagttgaaa gccgccgccg tcaccgacct
     4081 cgtgctcgac atccgctaca acggcggcgg ctttctcgac atcgcgtccg agctcgccta
     4141 catgatcgcg ggccccgcca acaccaacgg caagaccttc gagcggctca tcttcaacga
     4201 caagaatccg ttccagttga cggcggcgca cagcgcgacg ccgttccgca acgtgtcgca
     4261 aggcttttcc ggcgccgccg gtcaaccgct cccgtttctc ggcctggacc gggtctacgt
     4321 gctggccggg ccgggccggg catgcgctcg gcgagcgaag ccatcgtcaa cggcctgcgc
     4381 ggcgccggcg tgcgggtcga cctgatcggt ggaacgacct gcggcaagcc ttacgggttt
     4441 ttcgcggccg acaactgcaa caccacctat ttcgcgattc agttccatgg tgtcaacgac
     4501 gtgggcttcg gcgactacac cgacgggttc gcgccgacct gcccggttgc cgacgacttc
     4561 aatcaccagc tcggcgaccc cgccgaaggg ctgctttcgg tcgcgatcgg ctatcgggcg
     4621 accggcacgt gcgtgcgggg cacggcgcgg gcgctgagcg tgcgtccgtt cgtggcgcag
     4681 ggcgaagcca gcttcgtgcg ctcgcccttg cgcgagaacc gcttctaccg ggatcgatga
     4741 actaccggca ttggcgcggc gcggcggctg tcgtcgcggc gctctggctg ctcggctgcc
     4801 aggcgccggc ggtttcggcg gaggtcgagg ccgtgattgt cgatcctggc gcgaagtcgc
     4861 gcgccgaatt gcagcgcgcc gtcagcgcct tgctcggtgt gccttcggtg acgctcgccg
     4921 acgatgcgct gaccggctcg agcgagttgc tgatcgaacg cagcgtcgtt cgcgacgcgc
     4981 gcggcctgag catcacgggg cgcgactacg accggcccga gtcgtttcgg ttgttcaaga
     5041 gcggggcggc ttgcgtgctg gtgcatgcgc gtgacggcaa gcgagcggtg ctcgccgaaa
     5101 cgaggtgcga gcggttgaaa tgagcgcgtg tcattgcaaa cttttgccct tcgcctggga
     5161 agacaaatga gcccgcactt tctgcatctc ctgatgccca tgctggtcct gctggccggc
     5221 tgcgcgacat tgccgccgca cgtgccgagc ccgcccgttc acgcgctgac cgatgtcgcc
     5281 ggcacacccc tggggcggat cgcggcggcc tccctgcctt cggaccagcc ggcgctgtcg
     5341 ggctttcggc tgctgcccga aggcgaaacc gccttcaacg cgcgcatcgc gctggcgcgg
     5401 cgcgcgcaga agtcgctgga cgttcagtat tacctgatcc gcaacgacga tctcgggcag
     5461 caattcctgc gtgaactgcg cgacgcggcg ctgcgcggcg tgcgcattcg cctgctcgtc
     5521 gacgacctct acacggccgg cgaagacgag ttgctgaccg gcctggcggc ctacgccaac
     5581 gtcgaggtgc gcctcttcaa tccgttgccg gcgcgcgcgg gttcgttcaa ccggcgtctc
     5641 ctcttctcga tgcacgagtt cgggcgcatc aaccaccgaa tgcacaacaa gctgttcgtc
     5701 gcggacaaca gtttcgccgt ttccggcggc cgcaacatcg ccgaagaata tttcatgcgc
     5761 agcgcgaaag ccaacttcat cgacctggac gtgctctctt gcgggccggt cgtgcgggag
     5821 ctgtcgaccg tgttcgacag ctactggaac agcgcggtcg tggcgccgat cggcagcgtg
     5881 gccgagccgg tgccgcccga gcaggcgcgg cggcgcttcg acgaactcgt gcgcagcgcc
     5941 ggcccgcgtg tcgccgaacg cgcgcgcgac gtgttgggtc gcacgccggt cgcggagcaa
     6001 ctcgacagcg gcgaactcac ccaggccttc gcaccggcgc gcgtcttcgc cgacaccccc
     6061 gacaaggtgg ccggcgtgga gcgcggcgcc agggggccga ccgtgacgga gcaaacgctc
     6121 ggcctgttcg cctcggcgcg cgccgaggtc agcatcgcct cgccgtattt catcccgggc
     6181 gagcggggga tgacgttcat acgatcggtc ggcgcgaccc aggagaacgg acgcatcacc
     6241 ctggtgacca actcgctggg atcgaccgac gagccgttgg cgtacgcggg ctatgcgcgc
     6301 taccgcctgg aattgctcaa ggccggcgtg cgcattcgcc tgctcgtcga cgacctctac
//
LOCUS       DASVHM010000589         2845 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_692294, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000589 DASVHM010000000
VERSION     DASVHM010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2845
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_692294"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..900)
                     /locus_tag="VF308_11030"
     CDS             complement(<1..900)
                     /locus_tag="VF308_11030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEX7437236.1"
                     /translation="MSAAALVSFRAPLLPWAVATDDELRFRRIAKRVLITCALLFIAM
                     PWLPVMQPDRSQPQELALPMAKLLLEQEKPPPPPPAPKAKPEAATKPIEREIATHKAE
                     PLKPAARRPAAPPKVALNKEAPIPEARVPVPDKPPGEVDAARRKAAGIGLLAMKDELQ
                     ELHGAPLAVQLVPVKQGPGVGTSVGVGVGAGNEAGVPTRALITSNATGGSGGINTASY
                     SRNTGGGGLAGRATTLVEGVIGGGGGGGAGGGGARGRGDSTGSGIGGAGGGGNGAGGS
                     VQKGGGKASRSLEDVRLVFDRNKG"
     gene            complement(897..1391)
                     /locus_tag="VF308_11035"
     CDS             complement(897..1391)
                     /locus_tag="VF308_11035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEX7437237.1"
                     /translation="MKITPLQRRAEHRNRNKMMVDMNLVSLIDVFTILIFFLLSNSGG
                     VETLPSPRAVRLPESVAEKAPKETVIVVVSGSDILVGGRTIASVVDVLATDGDLIAPL
                     KAELDLQAARQVIRKENEADSKRLTIMGDKDIPYRLLRKVMYTGARANFSDVSFAVRQ
                     RYEQ"
     gene            complement(1400..1897)
                     /locus_tag="VF308_11040"
     CDS             complement(1400..1897)
                     /locus_tag="VF308_11040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEX7437238.1"
                     /translation="MPVRRLRKTPAHLEITAFINLIVVLVPFLLSTAVFTHLAVIDLS
                     LPAQSSEKLEKLDPNKLLKLEVVIRPEALEVGDRIGGLFWRIPNVATGADVKTLSARI
                     EEVKLKYPDTREATVLSEPNISYDTLVQVMDAVRAGHQAQGAKIVSTDFFPNISIGDA
                     PIRRQ"
     gene            complement(1900..2640)
                     /locus_tag="VF308_11045"
     CDS             complement(1900..2640)
                     /locus_tag="VF308_11045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEX7437239.1"
                     /translation="MDAFSTVVKFFQDCGLFIYPSALIMALGVTIAIERFIFLTRARN
                     QNRKVWSQVLPMLQKGQFREVQSFTAQSDAAVGKIVNYGLSRMRSPGRREDFDAVMEE
                     GMMEIVPRLEKRTHYIATFANVITLVGLLGTIIGLIKGFTAVAQVNPAEKAEMLSASI
                     SIAMNNTAFALMVAIPFLLIHSFLQAKTSEIVDGLEAAKISFLNLVQRLRAEQTAAHE
                     AEATQPGRVRSVSADGAPTSLAAARRGA"
BASE COUNT          443 a          950 c          963 g          489 t
ORIGIN      
        1 gcccttgttg cgatcgaaga cgagtcggac atcctcgagc gaacgggacg ccttgccgcc
       61 gcccttctgc accgagccgc cggcaccgtt gccgccaccg ccggcgccgc cgataccgct
      121 gccagtgcta tcgccgcggc cgcgtgcgcc gccgccgccc gccccgccgc caccgccacc
      181 gccgatgacg ccttcgacca gcgtcgtggc gcggccggcg agaccgccgc cgccggtgtt
      241 gcggctgtag ctcgcggtgt tgatcccgcc gctgccgccg gtcgcgttcg acgtgatcag
      301 tgcgcgcgtc ggcacgccgg cttcattgcc cgcgcccacc ccgacgccga cgctcgtgcc
      361 gacgcccggg ccttgcttca cagggacgag ttgcaccgcg agcggcgcgc cgtgcaattc
      421 ctggagctcg tccttcatcg cgagcaggcc gatgccggcg gccttgcgcc gcgccgcatc
      481 gacttcaccg ggcggcttgt ccggcacggg gacgcgcgcc tcgggtatcg gcgcttcctt
      541 gttcagcgcc accttcggcg gcgccgcggg ccggcgcgcc gcgggcttca gaggctcggc
      601 cttgtgggtc gcgatttcgc gctcgatcgg cttggtcgcc gcctcgggct tcgccttggg
      661 agcgggcggg ggcggcggcg gcttttcctg ctcgagcagc agcttggcca tcggcagtgc
      721 cagctcctgc ggttgggaac ggtccggctg catcaccggc agccagggca tggcgatgaa
      781 gagcagcgca caggtgatca ggacgcgctt cgcgatgcgc cgaaaacgca gttcgtcgtc
      841 ggtcgcaacg gcccagggca gcagcggtgc gcggaacgag accaatgcag cggcactcat
      901 tgctcgtacc tttgccgcac cgcgaacgac acgtcgctga agttggcgcg cgcgcccgtg
      961 tacataacct tgcgcagcag gcggtaaggg atgtccttgt cgcccatgat cgtcagacgc
     1021 ttgctgtcgg cttcgttctc cttgcggatc acctggcggg cggcctgcag atcgagctcg
     1081 gccttgagcg gcgcgatcag gtcgccgtcg gtcgcgagca catcgacgac cgatgcgatg
     1141 gtgcgtccgc cgacgaggat gtcgctgccg ctgacgacga cgatgacggt ctccttcggc
     1201 gccttctcgg ccaccgattc gggcagcctc acggcgcgcg ggctgggcag cgtttcgacg
     1261 ccgccggaat tggaaagcag gaagaagatc aggatcgtga acacgtcgat cagcgagacg
     1321 aggttcatgt cgaccatcat cttgttgcgg ttgcggtgct cggcgcgccg ctgcagcgga
     1381 gtgatcttca tggcgcgcgt tattgcctgc ggatcggcgc gtcgccgatc gagatgttgg
     1441 ggaagaaatc cgtgctcacg atcttcgcgc cctgcgcctg atggccggcg cgcaccgcgt
     1501 ccatcacctg gaccagcgtg tcgtacgaaa tgttcggctc ggaaagcacg gtcgcttccc
     1561 gcgtgtccgg atacttgagc ttgacctcct cgatgcgcgc cgagagcgtc ttcacgtcgg
     1621 cgcccgtcgc gacgttcgga atgcgccaga acaagccgcc gatgcgatcg ccgacttcga
     1681 gcgcctcggg gcggatgacg acctcgagct tgagcaattt gttgggatcg agtttttcca
     1741 gcttctccga agactgcgcg ggcaggctga ggtcgatcac ggccaggtgc gtgaacaccg
     1801 ccgtcgacag caggaacggc accagcacca cgatcaggtt gatgaaggcg gtgatctcga
     1861 gatgcgccgg cgtcttgcgc aggcgacgga ccggcacgat caagcccccc ggcgcgccgc
     1921 cgcgagggaa gtcggcgccc catcggcgga caccgagcgc acgcgacccg gctgggtggc
     1981 ctcggcttca tgggccgcgg tttgctcggc gcgcaggcgt tgaacgaggt tgaggaagct
     2041 gatcttcgcg gcttcgaggc cgtcgacgat ctcgctcgtc ttggcctgca ggaacgagtg
     2101 gatcagcagg aagggaatgg cgaccatcag cgcgaacgcg gtgttgttca tcgcgatcga
     2161 gatgctcgcc gagagcatct cggccttctc ggccgggttg acctgcgcca ccgccgtgaa
     2221 gcccttgatc aggccgatga tcgtgccgag caggccgacc agcgtgatca cgttggcgaa
     2281 ggtcgcgatg tagtgcgtgc gcttctcgag acgcggcacg atctccatca tgccctcctc
     2341 catcacggcg tcgaagtctt cgcgccggcc cgggctgcgc atgcgcgaga ggccgtagtt
     2401 gacgatcttg ccgaccgcgg cgtcggactg cgcggtgaaa ctctgcactt ccctgaactg
     2461 ccccttctgc agcatcggca gcacctgcga ccagaccttg cgattctggt tgcgcgcacg
     2521 cgtgaggaag atgaatcgct cgatcgcgat cgtcaccccg agggccatga tcagggcgct
     2581 cgggtagatg aacaagccgc aatcctgaaa gaacttaacg acggtgctga aggcatccat
     2641 gactgctgac tccggtgtaa aacgatgatt caaagaggac tatttggccg gcgcggcggc
     2701 ggccgcaggc acattcgcct gcgtctgcac gccgtaacgc acctggcgac ggaagacgtc
     2761 gcggtcgacc ggcgcaagcg cctcgtcgag cacactgacg agcggccggc ctgaaagatc
     2821 gcccggcccg ggtttcttcc agggc
//
LOCUS       DASVHM010000590         2747 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_620504, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000590 DASVHM010000000
VERSION     DASVHM010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_620504"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..931
                     /gene="had"
                     /locus_tag="VF308_11050"
     CDS             <1..931
                     /gene="had"
                     /locus_tag="VF308_11050"
                     /EC_number="1.1.1.368"
                     /inference="COORDINATES: protein motif:HMM:TIGR03201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0019439 - aromatic compound catabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="6-hydroxycyclohex-1-ene-1-carbonyl-CoA
                     dehydrogenase"
                     /protein_id="HEX7437240.1"
                     /translation="YFYDGVRTNHALPLALGHEVSGRVVAYGAGAERWAGKAVIVPAV
                     LPCGECDLCRRGLGTICRQQKMPGNDIQGGFASHIVVPGRGLCEVDEARLARAGLTLA
                     DVSIVADALTTPYQAVRRAGVTPGSLAIVVGTGGVGGYCVQVACAFGASVVAIDVDDA
                     KLAAIALHGAALTLNSRSLDAKAIKAAVFDFAKKNGLRSTEWFIFECSGSAPGQLTAY
                     SLLVHGATLSVVGFTMDKVELRLSNLMAFDARAIGNWGCPPEAYPAALDLVLDRKVQI
                     KPFVEAHPLDDINRVFSAVHHHEIKKRAVLVPA"
     gene            945..2072
                     /gene="oah"
                     /locus_tag="VF308_11055"
     CDS             945..2072
                     /gene="oah"
                     /locus_tag="VF308_11055"
                     /EC_number="3.7.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR03200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018807 -
                     6-hydroxycyclohex-1-ene-1-carboxyl-CoA hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0019439 - aromatic compound catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase"
                     /protein_id="HEX7437241.1"
                     /translation="MNAPETISALRDFKNHDLVDDISKPGIRYEKRPAKTPDGATAPG
                     LYNAWITLDNPTQYNSYTTDMVKGAILAFRAASNARDVNCVVFTGAGDKAFCTGGNTK
                     EYAEYYAGHPQEYRQYMRLFNDMVSAILACDKPVICRVNGMRIGGGQEIGMACDFSVA
                     QDLARFGQAGPKHGSAPIGGATDFLPLMVGAERAMAACVLCEPFSAHKAYQMGVISDL
                     VPALKVDGKFIANPLVETQRMVDEFGRSVYGEPKTGGAAKEAKAVLASGSVDLSLLDA
                     KVEELCAKILLTFPDCTTRTLEELRKPKLEAWNRNKEDSRAWLALNMMTEGRAGFTAF
                     NEGTKDDREADFVLLRQKLAAGESWVGPLHDSIQPKNKRRG"
     gene            2075..>2747
                     /locus_tag="VF308_11060"
     CDS             2075..>2747
                     /locus_tag="VF308_11060"
                     /EC_number="4.2.1.100"
                     /inference="COORDINATES: protein motif:HMM:TIGR03189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclohexa-1,5-dienecarbonyl-CoA hydratase"
                     /protein_id="HEX7437242.1"
                     /translation="MSPLKDWLEQDGALLRLRLDRPKANIIDAQMIAALDGALLAWRT
                     QTTLRGVLLDAEGPHFSFGASVEEHLPASCAAMLASLHALIIGMLEFPVPILVAVRGQ
                     CLGGGLEVALAGGPIFAAPDAQFGQPEMMLGVFAPAASVLLPYRVNQPAAEDLLFSGR
                     SIGAAEAKAIGLVHTVFDDPQIAALAYFEQHLVNKSAAALACAVTAARGAMVRDVRQR
                     LGEVER"
BASE COUNT          452 a          959 c          927 g          409 t
ORIGIN      
        1 ctatttctat gacggggtgc ggaccaacca cgcgctgccg ctcgcgctcg gccatgaggt
       61 cagcggccgg gtggtggcct acggcgcggg cgccgagcgc tgggccggca aggcggtcat
      121 cgtgccggcg gtgctgccgt gcggcgaatg cgatctctgc cggcgcggcc tggggaccat
      181 ctgtcgccag cagaagatgc cgggcaacga catccagggc ggcttcgcca gccacatcgt
      241 ggtgccgggc cgcggcctgt gcgaggtcga cgaagcgcgc ctggcgcgcg ccggcctcac
      301 gctggccgac gtctcgatcg tcgccgatgc actgaccacc ccctaccagg cggtgcggcg
      361 tgcgggcgtc accccgggca gtctcgcgat cgtcgtcggc acgggcggcg tcggcggcta
      421 ttgcgtgcag gtcgcctgcg ccttcggcgc cagcgtggtc gcgatcgacg tcgacgacgc
      481 caagctggca gcgatcgcgc tccacggcgc cgcgctgacg ctgaacagcc gctcgctcga
      541 cgccaaggcg atcaaggccg cggtgttcga cttcgccaaa aagaacggcc tgcgcagcac
      601 cgaatggttc atcttcgaat gctcgggcag cgcgcccggg caattgaccg cgtacagcct
      661 gctggtgcac ggcgcgacgc tgtcggtcgt cggcttcacg atggacaagg tcgaactgcg
      721 cctgtcgaac ctgatggcgt tcgatgcacg tgcgatcggc aactggggct gcccgcccga
      781 ggcctacccc gctgcgctcg acctcgtgct cgaccgcaag gtgcagatca agccgttcgt
      841 cgaagcccat ccgctcgacg acatcaatcg cgtgttctcc gcggtgcatc accacgagat
      901 caagaaacgt gccgtgctgg tcccggccta accaaggagc cctcatgaac gcccccgaaa
      961 cgatttccgc cctgcgcgac ttcaagaacc acgacctcgt cgacgacatc tccaagcccg
     1021 gaatccgcta cgagaagcgc ccggcgaaga cgcccgatgg cgcgaccgca cccggcctct
     1081 acaacgcctg gatcacgctc gacaacccga cccagtacaa ctcgtacacg accgacatgg
     1141 tcaagggcgc gatcctcgcg tttcgtgctg cgtcgaacgc gcgcgacgtc aactgcgtgg
     1201 tcttcaccgg cgcgggcgac aaggccttct gcaccggcgg caataccaag gagtacgccg
     1261 agtactacgc cggccatccg caggagtacc gccagtacat gcgcctgttc aacgacatgg
     1321 tgtcggcgat cctggcgtgc gacaagccgg tgatctgccg cgtcaacggc atgcgcatcg
     1381 gcggcggcca ggaaatcggc atggcctgcg acttctccgt cgcgcaggac ctggcgcgct
     1441 tcggccaggc cgggcccaag cacggctcgg cgccgatcgg cggcgccacc gacttcctgc
     1501 cgctgatggt cggtgccgaa cgcgcgatgg ctgcgtgcgt gctgtgcgag ccgttctcgg
     1561 cccacaaggc ctaccagatg ggcgtgatca gcgacctcgt tcccgcgctc aaggtcgacg
     1621 gcaagttcat cgccaacccg ctggtcgaaa cgcagcgcat ggtcgacgaa ttcggtcgca
     1681 gcgtgtacgg cgagcccaag accggcggcg cggccaagga ggccaaggcc gtgctggcca
     1741 gcggcagcgt cgacctgtcg ctgctcgacg ccaaggtcga ggagctgtgc gccaagatcc
     1801 tgctcacctt ccccgattgc accacccgca cgctggagga actgcgcaag cccaagctcg
     1861 aggcgtggaa ccgcaacaag gaagactcac gcgcctggct ggcgttgaac atgatgaccg
     1921 aggggcgcgc cggcttcacg gccttcaatg aaggcacgaa ggacgaccgc gaagccgact
     1981 tcgtgctgct gcgccagaag ctggccgccg gcgagagctg ggtcggcccg ctgcacgact
     2041 cgatccagcc gaagaacaag cgcaggggct gagcgtgtcg ccgctgaagg actggctcga
     2101 acaggacggc gcgctgctgc ggctgcgcct ggaccgcccg aaggcgaaca tcatcgatgc
     2161 gcagatgatc gccgcgctgg acggcgcgct actcgcctgg cgcacgcaga cgaccctgcg
     2221 cggcgtgctg ctcgatgccg agggcccgca cttcagcttc ggcgccagcg tcgaggaaca
     2281 tcttcccgcg agttgcgcgg cgatgctcgc gtcgctgcat gcgctgatca tcgggatgct
     2341 cgaatttccg gtgccgatcc tggtcgccgt gcgcggccag tgcctgggcg gcgggctcga
     2401 ggtcgcgctc gccggcggcc cgatcttcgc cgcacccgat gcgcagttcg gccaacccga
     2461 gatgatgctc ggcgtattcg cgccggcggc gtccgtcctg ctgccgtacc gggtgaacca
     2521 gccggcggcg gaagacctgc tgttctcggg gcgctcgatc ggagccgcgg aggccaaggc
     2581 gatcggcctc gtgcacaccg tgttcgacga tccgcagatc gcggcactgg cgtacttcga
     2641 gcagcacctc gtcaacaaga gcgcggccgc gctggcttgc gcggtcaccg cggcgcgcgg
     2701 cgccatggtc cgcgacgtac ggcaacgcct gggcgaggtc gagcgcc
//
LOCUS       DASVHM010000591         2157 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_329040, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000591 DASVHM010000000
VERSION     DASVHM010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2157
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329040"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(44..1051)
                     /locus_tag="VF308_11065"
     CDS             complement(44..1051)
                     /locus_tag="VF308_11065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX7437243.1"
                     /translation="MIAFVLKRLALVVPTFLGITLLVFSLIRLIPGDPVEALSGERGM
                     TEERYHRLVHEFGLDRPLPVQYGEYVWRALHGDLGVSVVTHEPVFSEFAARFPATVEL
                     SLVAMLFALVIGIPAGIVAAVKRNTVWDYSVMGASLTGYSMPIFWWGLLLILTFSVGL
                     GWTPVSGRLAIQYDIPTVTGFMLVDSLLSGDKGAFRSAVSHLILPAVALGTIPLAVIA
                     RMTRSSMLEVLREDYVRTARAKGAGQFRVVAIHALRNALIPVVTTIGLQVGTLLAGAI
                     LTETIFAWPGTGKWLVEAIHRRDYAAVQGGILMTATIIIGVNLIVDVLYGVINPRIRH
                     S"
     gene            complement(1071..>2157)
                     /locus_tag="VF308_11070"
     CDS             complement(1071..>2157)
                     /locus_tag="VF308_11070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009666250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437244.1"
                     /translation="DMAMDFASILSAEYADKMMAAKTPDVVDREPIGTGPFQFVSYQK
                     DAVIRYKAFDPHWGGRPKIDNLVYAITTDASVRYAKLKTGECHVMAFPKPADVALMKA
                     DPAINLVQQNGLNVGYISFNVEKKPFDSKLVRQALNMAVNKKAILDNVFQGAGAVAKN
                     PIPPTLWSYNDKVQDYPYDPAKAKALLAQAGYPNGVDVELWYLPVTRPYNPDGKRMAE
                     LIQQDWEKVGVRTKLITYEWGEYRKRSKTGEQHAMMFGWSGDNGDPDNFFVPLLGCAA
                     VKGGGNVSRWCNNDFEKMVQNAKLATRQTDRAGFYAKAQEIAHDEAPWIPIAHSVRFD
                     PVRKEVTGYKMDATAHHFFNKVDMPGQ"
BASE COUNT          352 a          693 c          749 g          363 t
ORIGIN      
        1 ggcggcgcag cgggctgggc cgccgcgatc ggcgcgatgg cgctcatgaa tggcggatcc
       61 gcggattgat cacgccgtag aggacgtcga cgatcaggtt gacgccgatg atgatggtgg
      121 ccgtcatcag gatgccaccc tgcaccgccg cgtagtcgcg ccggtgaatc gcctcgacca
      181 gccacttgcc ggtgccgggc caggcgaaga tcgtctcggt gaggatcgcg ccggcgagca
      241 gcgtgccgac ctgcaagccg atcgtggtca cgaccgggat cagggcgttg cgcagggcgt
      301 ggatcgcgac gacgcgaaac tgcccggcgc ccttggcgcg cgcggtgcgc acatagtctt
      361 cgcgcagcac ctcgagcatc gacgagcgcg tcatccgcgc gatcacggcg agcgggatcg
      421 tgccgagcgc gaccgccggc aggatcaggt gcgagaccgc gctgcgaaac gcacccttgt
      481 cgcccgagag cagcgagtcg acgagcatga agccggtgac ggtggggatg tcgtactgga
      541 tcgccaggcg ccccgacacc ggcgtccagc cgaggccgac cgagaaggtg aggatgagga
      601 gcagccccca ccagaagatc ggcatcgagt agccggtgag cgacgcgccc atcaccgagt
      661 agtcccacac cgtgttgcgc ttcaccgccg cgacgatgcc ggcgggaatg ccgatgacga
      721 gcgcgaacag catcgccacg agcgagagct cgaccgtcgc cgggaagcgc gccgcgaact
      781 ccgagaacac cggctcgtgc gtgacgaccg agacgccgag gtcgccgtgc agcgcgcgcc
      841 atacgtactc gccgtactgc accggcagcg gccggtcgag gccgaactcg tgcaccagcc
      901 ggtggtagcg ctcctcggtc atgccgcgct cgcccgacag cgcctcgacc ggatcgcccg
      961 gaatcaggcg gatcagggag aagacgagca gcgtgatgcc gaggaaggtc gggacgacga
     1021 gggcgaggcg cttgaggacg aaggcgatca cgccggggac cggatcgttg ctactggccc
     1081 ggcatgtcga ccttgttgaa gaagtggtgc gcggttgcgt ccatcttgta gcccgtcact
     1141 tccttcctga ccggatcgaa gcgcaccgag tgggcgatcg ggatccacgg cgcttcgtcg
     1201 tgcgcgatct cctgcgcctt ggcgtagaag ccggcgcgat cggtctggcg cgtcgccagc
     1261 ttggcgttct ggaccatctt ctcgaagtcg ttgttgcacc agcgcgagac gttgccgccg
     1321 cccttgaccg cggcgcagcc gagcagcggc acgaagaagt tgtcgggatc gccgttgtcg
     1381 cccgaccagc cgaacatcat cgcgtgctgc tcgccggtct tgctgcgctt cctgtactcg
     1441 ccccactcgt aggtgatgag cttggtgcga acgccgactt tctcccagtc ctgctggatg
     1501 agctcggcca tgcgcttgcc gtcggggttg tacgggcgcg tcactggcag ataccagagc
     1561 tcgacgtcga cgccgttcgg atagccggcc tgcgccagca gcgccttcgc cttcgccggg
     1621 tcgtacggat agtcctgcac cttgtcgttg tacgaccaga gcgtcggcgg gatcggattc
     1681 ttggcgaccg cgcccgcgcc ctggaagacg ttgtcgagga tcgccttctt gttgaccgcc
     1741 atgttcagcg cctggcgaac gagcttggaa tcgaacggct tcttttcgac gttgaacgag
     1801 atgtagccga cgttgaggcc gttttgctgg accaggttga tcgccgggtc ggccttcatc
     1861 agcgcgacgt cggccggttt cgggaacgcc atcacgtggc actcgcccgt cttcagcttg
     1921 gcgtagcgga ccgatgcgtc ggtggtgatc gcgtagacca ggttgtcgat cttcggccgg
     1981 ccgccccagt gcgggtcgaa cgccttgtag cggatcaccg cgtccttctg gtacgagacg
     2041 aactggaacg ggccggtgcc gatcggctcg cggtcgacga cgtcgggcgt cttggcggcc
     2101 atcatcttgt cggcgtactc ggccgagagg atcgacgcga agtccatcgc catgtcg
//
LOCUS       DASVHM010000592         1988 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_982269, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000592 DASVHM010000000
VERSION     DASVHM010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1988
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_982269"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..383
                     /locus_tag="VF308_11075"
     CDS             <1..383
                     /locus_tag="VF308_11075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020227593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEX7437245.1"
                     /translation="RSLLAAPALAGQGGTPEPAKLEVIQAGVGAAIHLVPVTDVAYFE
                     AADKYVRVITAQREHLIRISLRELLPQLDPRRFWQIHRGTVVRADAIDVALRDESGKL
                     TLALRGRPERLTVSRLYAHLFKAM"
     gene            416..712
                     /locus_tag="VF308_11080"
     CDS             416..712
                     /locus_tag="VF308_11080"
                     /inference="COORDINATES: protein motif:HMM:NF024636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2TM domain-containing protein"
                     /protein_id="HEX7437246.1"
                     /translation="MDANNGNDGRDSIEARARRRVGMKIGFYIHALVFTLVNTGLYAF
                     NSAIGGTRWSHFPLWGWGLGLAIHGIVTLISLQGEGLRSRMLAQEIERLRRNDR"
     gene            complement(766..1236)
                     /locus_tag="VF308_11085"
     CDS             complement(766..1236)
                     /locus_tag="VF308_11085"
                     /inference="COORDINATES: protein motif:HMM:NF017269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HEX7437247.1"
                     /translation="MIIRPILGIACAATLLALAACASAPNRVDPYASAPVYVQPSIYS
                     QAAEYGVVRAIDVVPVESRTRGGGAILGAVIGAVVGNQVGSGTGRAAATVAGAVGGGI
                     AGNAIENRGRRDNEVFHVGVRFDNDSYREFDFQRVDDLRVGDRVKWEGGQLHRY"
     gene            1412..>1988
                     /locus_tag="VF308_11090"
     CDS             1412..>1988
                     /locus_tag="VF308_11090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005794930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HEX7437248.1"
                     /translation="MNPSKDAPKASNFLRQIIERDLAEGTYAGRRFAGSPGDAAHHAA
                     GGPDPARIRTRFPPEPNGYLHIGHAKSITLNFGLAAEYGGVCHMRFDDTNPEKEEQEY
                     VDSILDAVQWLGFDWHAHGTSHLYYASAYFDFMYRAAEALIAADRAYVDELSADEIRA
                     HRGDFGHAGTDSPFRSRTPAENLARFREMRDG"
BASE COUNT          328 a          715 c          658 g          287 t
ORIGIN      
        1 tgcgcagcct cctggcggcg cccgcgctag ccgggcaagg cggcacgccc gagccggcca
       61 agctcgaggt gatccaggcg ggcgtcggcg ccgcgatcca cctcgtgccg gtcacggacg
      121 tcgcctattt cgaagcggcc gacaagtacg tgcgcgtgat cacggcgcag cgcgaacacc
      181 tgatccggat ctcgctgcgc gagctgctgc cgcaactcga cccgcggcgc ttctggcaga
      241 tccaccgcgg cacggtggtc cgcgccgatg cgatcgacgt ggcgctgcgc gacgagtcgg
      301 gcaagctgac actggcgttg cgcggccggc ccgagcgcct gacggtcagc cgcctctacg
      361 cgcacctctt caaagccatg taggccagcg catgccgatt cgaaaggaga tcacgatgga
      421 cgcgaacaac gggaacgacg ggagagattc gatcgaagcg cgagcgcgcc gccgcgtcgg
      481 gatgaagata ggcttctaca tccatgcgct ggtgttcacg ctcgtcaaca ccggccttta
      541 cgccttcaac agcgcgatcg gcggcacgcg ctggtcgcac tttcccctgt gggggtgggg
      601 actgggcctc gcgatccacg gcatcgtcac gctgatcagc ctgcagggcg aaggcctgcg
      661 ctcgcgcatg ctggcgcagg agatcgagcg gctgcgccgc aacgatcgct gatttcgccg
      721 gccgcgcagg ggtcgtgccc tgcgcccggc tggcgcggcc gccgatcagt agcggtgcag
      781 ctggccgcct tcccacttga cccggtcgcc gacgcgcagg tcgtccacgc gctggaagtc
      841 gaactcgcgg tagctgtcgt tgtcgaaacg gacaccgacg tgaaagacct cgttatcgcg
      901 ccggccgcga ttctcgatcg cattgccggc tatcccaccg ccgacggccc cggccaccgt
      961 ggccgcggcg cggcccgtgc cgctgccgac ctgattgccg acgacggcgc cgatcaccgc
     1021 accgagaatc gcaccgccgc cgcgcgtgcg cgactcgacc ggcacgacgt cgatcgcgcg
     1081 aacgacgccg tactcggccg cctgcgaata gatcgatggt tgcacgtaga ccggcgcgct
     1141 cgcgtacgga tcgacccggt tcggggcgga agcgcatgcg gcgagtgcga ggagcgtcgc
     1201 tgcgcacgcg atgccgagaa tcggacggat gatcatgagg ggcttctgtt gtctggcggg
     1261 atgcgtgatg ctggccccgt cccgacgaca aaggaatcgg actggcttgg ctgcggctgt
     1321 gggccgacag gcgcgcgccg tgtagtcacc ctcccactgg cgggcgcccc atagaatcgc
     1381 aacgcccctc cccgccgatg tccacccccg catgaatccc agcaaagacg ccccgaaggc
     1441 gagcaacttc ctgcgccaga tcatcgagcg cgatctcgcc gagggcactt atgcgggccg
     1501 ccgcttcgcc ggatctcccg gcgatgcggc ccaccacgcg gccggcggcc ccgacccggc
     1561 gcgcatccgc acgcgctttc cgcccgagcc gaacggctac ctgcatatcg gccacgccaa
     1621 gagcatcacg ctcaacttcg gcctcgcggc cgagtacggc ggggtgtgcc acatgcgctt
     1681 cgacgacacc aaccccgaga aggaggagca ggagtacgtc gacagcatcc tcgatgcggt
     1741 gcagtggctc ggcttcgact ggcatgccca cgggaccagc catctctact acgcgagcgc
     1801 ctatttcgac ttcatgtacc gcgccgccga agcgctgatc gcggccgacc gtgcctacgt
     1861 ggacgaactg agcgccgacg agatccgcgc gcatcgcggc gacttcggcc acgccggcac
     1921 cgacagcccg tttcgcagcc gcacaccggc cgaaaacctg gcgcgctttc gcgagatgcg
     1981 cgacggcc
//
LOCUS       DASVHM010000593         3739 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1053307, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000593 DASVHM010000000
VERSION     DASVHM010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3739
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1053307"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..247
                     /locus_tag="VF308_11095"
     CDS             <1..247
                     /locus_tag="VF308_11095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009518671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0030541 - plasmid partitioning [Evidence
                     IEA];
                     GO_process: GO:0051290 - protein heterotetramerization
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEX7437249.1"
                     /translation="PAKADALLKWLERVIEGLASFAERGAYPAELLALGIKDFRQTFF
                     KSYGVIYRVIRAKVHIVMIADSRRDLQALLARRLLGG"
     gene            274..2478
                     /gene="pbpC"
                     /locus_tag="VF308_11100"
     CDS             274..2478
                     /gene="pbpC"
                     /locus_tag="VF308_11100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017451821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1C"
                     /protein_id="HEX7437250.1"
                     /translation="MGVLSVVRRWGLALVLTSSLATAQALPSFADVRAAHRPSDVVLL
                     DRHGTPVQTVRVDKTVRRLAWVALADMSPALLQAVVLSEDRRFYEHSGVDWSAVARSA
                     WDNAWNTRTRGASTLTMQLAGLIDDGLARPAAGRSVAQKLGQAVTAARLDARWKKSEI
                     LEAYLNSVAFRGEVVGIDALAQTLFGKHPSGLDVEEAALAAALVRGPNAKPEVVAQRA
                     CGVLRLQNLPCVGVQALTETALARRGGMPLGEQLAPHFARHVVVAGGGAVQRSTLDAG
                     LQRLAVGLLRRQLGELSGRNVEDGAIVVLDNASGDVLAWVGSSGELSGAAQVDGVLAR
                     RQPGSTVKPFVYELAFEKKMVTPASLIDDSPTQIATTNGLYLPQNYDHAFKGWISART
                     ALGASLNVPAVRVGAMLGPDALFTRLNALGLELPESGGYYGHSLALGSADVTLLALAN
                     AYRAFANGGVYSGVYLRPDQAPGTKTSRPSARTMAASKPVADPAAVFLVTDILADNNA
                     RVRTFGLDSLLATRGFAAVKTGTSKDMRDNWCLGYTDRYTVGVWVGNASGAAMHDVSG
                     VSGAAPIWQALVRHLHAGRPSQWPPPPAGVERVRIRFEQGTEAPREEWFAAGTAQALQ
                     RSGSQVGAATRFGITSPRDGSIFAIDPDMPPAAQRIAFEGEHGDWVLDGKLLATTGRI
                     FWAPWPGRHRLTLLGPGREPLQTVVFEVRGAAVRAAGEAPTPGRRGVPSLRR"
     gene            complement(2438..2791)
                     /locus_tag="VF308_11105"
     CDS             complement(2438..2791)
                     /locus_tag="VF308_11105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HEX7437251.1"
                     /translation="MKIIVRWLLLAAALLLVANLYPGVVVASFGSAMIAALVLGLLNT
                     LLRPILVLLTLPVTILTLGLFLFVINALMFYFAASLLSGFHVTGFGAALIGSLIYSVC
                     GIVIDAAMERLFSRV"
     gene            3035..3436
                     /locus_tag="VF308_11110"
     CDS             3035..3436
                     /locus_tag="VF308_11110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIB/MDM2 domain-containing protein"
                     /protein_id="HEX7437252.1"
                     /translation="MATAKKPVAKKAAPAKKAKAAPAKKVAAKKAAPAKKVVAKKVAA
                     KKAPAKKRTPNAAFMKAMTPSAALAAIIGDKPVPRTEVTKKMWDYIKKNSLQDQAKRT
                     MINADAKLKEIFKKAQVSMFEMTKLINSHLS"
     gene            complement(3482..>3739)
                     /locus_tag="VF308_11115"
     CDS             complement(3482..>3739)
                     /locus_tag="VF308_11115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEX7437253.1"
                     /translation="VLRGVWAEQRDIADPKTLAGMLATLGLPARRREDAQAPVVQERY
                     DAHTQRAIEAGVFGVPSYVIDGELFWGQDRLDFVQRRLARA"
BASE COUNT          649 a         1250 c         1304 g          536 t
ORIGIN      
        1 gccggccaag gccgatgcgc tgctgaagtg gctcgagcga gtgatcgaag gtcttgcctc
       61 ctttgcggag cggggcgcct atccggcgga gttgctcgcg ctgggaatca aggactttcg
      121 acagactttc ttcaaatcct acggcgtgat ctatcgcgtc attcgggcca aggtccatat
      181 cgtgatgatc gccgacagcc gtcgcgacct gcaggccttg ttggcgcggc gattgctggg
      241 cggatgacgg gaggcacatt ggcgacgcgc aggatgggag tcctttcggt tgtccggcga
      301 tggggcctgg ccctcgtcct gacatcgtcg ctcgccactg cgcaggcgct cccttcgttc
      361 gccgacgtgc gcgcggcgca ccggccgtcc gacgtcgtgc tgctcgaccg ccatggaacc
      421 ccggtccaga cggttcgcgt cgacaagacg gtgcggcggc tcgcgtgggt cgccctcgcc
      481 gacatgtcgc cggcgttgct gcaggcggtc gtgctgagcg aagaccggcg cttctacgag
      541 cacagcgggg tcgactggag cgcagtcgcg cgcagcgcgt gggacaacgc ctggaacacg
      601 cgcacgcgcg gcgcttcgac cctgacgatg caactcgccg ggctgatcga cgacggcctg
      661 gctcggccgg ccgccggccg cagcgtcgcc caaaagctcg gccaggccgt gaccgcggcc
      721 cggctcgacg cgcgctggaa gaagagcgag atcctcgagg cgtatctgaa ctcggtggcg
      781 tttcgtggcg aggtcgtcgg catcgacgcg ctggcgcaga cgctctttgg caagcacccg
      841 agcggcctcg acgtcgagga ggccgcgctc gcggcggcgc tggtgcgcgg gccaaacgcg
      901 aagccggagg tcgtcgcgca gcgcgcctgt ggggtccttc gattgcaaaa cctgccgtgc
      961 gtcggcgtgc aggcgctgac cgaaacggcg ctggcccgac gcggcggcat gccgctcggc
     1021 gaacagctcg caccgcattt cgcgcgccac gtggtcgtcg cgggcggcgg cgcggtgcag
     1081 cgcagcacgc tcgatgccgg gcttcagcgg ctcgcggtcg ggttgctgcg gcgccagctc
     1141 ggcgagctct cggggcgcaa cgtcgaggac ggcgcgatcg tcgtcctcga caacgcaagt
     1201 ggcgatgtgc tggcctgggt cggatcgagc ggcgaactct cgggcgcggc gcaggtcgat
     1261 ggcgtgctcg cccggcgcca gccgggatcg acggtgaagc ccttcgtcta cgagctcgcc
     1321 ttcgagaaga agatggtcac gccggcgagc ctgatcgacg attcgccgac ccagatcgcg
     1381 accacgaacg gcctctatct gccgcagaac tacgaccacg cgttcaaggg ctggatcagc
     1441 gcgcgcaccg cgctcggcgc gagcctgaac gtgccggccg tgcgagtcgg cgcgatgctc
     1501 ggcccggacg cactgttcac gcggctcaac gcgctcggcc tcgagctgcc cgaaagcggc
     1561 ggctactacg gccattcgct ggctctgggc agtgcggacg tcacgctgct cgccctcgcc
     1621 aacgcctatc gcgcgttcgc gaacggcggc gtctacagcg gggtctatct gcgaccggac
     1681 caggcgccgg gtacaaaaac ctcgcggcca tcggcccgaa cgatggcagc gtcgaagccc
     1741 gtcgccgatc cggctgcggt gttcctcgtc accgacatac tcgccgacaa caacgcgcgc
     1801 gtgcggacct tcgggctcga cagtctgctc gcgacgcgcg gtttcgcggc cgtgaagacc
     1861 ggcaccagca aggacatgcg cgacaactgg tgcctcggct acaccgatcg ctacacggtc
     1921 ggcgtctggg tcggcaacgc gagcggcgcg gcgatgcatg acgtgagcgg cgtcagcggc
     1981 gcggcgccga tctggcaggc gctggtccgg cacctgcatg ccggccgccc ttcgcaatgg
     2041 ccgccgccgc cggccggggt cgagcgcgtg cggatccgtt tcgagcaggg caccgaggcg
     2101 ccgcgcgaag aatggttcgc ggccggcacg gcacaggcgc tccagcgcag cggctcgcag
     2161 gtcggcgcgg cgacccgctt cggcatcacg agcccgcgcg acggcagcat cttcgcgatc
     2221 gaccccgaca tgccgccggc ggcgcagcgc atcgccttcg agggcgagca cggcgactgg
     2281 gtgctcgacg gcaagctgct cgccacgacc ggccggatct tctgggcgcc gtggcccggc
     2341 cggcatcgcc tgaccctgct cgggccgggc cgcgagccgc tgcagacggt cgtgttcgag
     2401 gtgcggggcg cggccgtgcg ggccgcgggc gaggcgccta cacccgggag aagaggcgtt
     2461 ccatcgctgc gtcgatgacg atgccgcaga cgctgtagat cagcgagccg atcagtgccg
     2521 cgccgaaccc ggtgacgtgg aagccgctca gcaacgaggc ggcgaagtag aacatcagcg
     2581 cgttgatcac gaacaggaag agaccgagcg tcaggatcgt gaccggcagc gtcagcagca
     2641 cgaggatcgg ccgcagcagc gtgttgagca gtccgagcac cagcgccgcg atcatcgccg
     2701 agccgaagct ggcgaccacg acgcccgggt acagattcgc gacgagcagc agcgccgcgg
     2761 cgaggaggag ccaacgcacg atgatcttca tgggcccgaa ggatagcggc agccagagcc
     2821 gatatcgcgc cgtctcgtgc gccggatgat gcgtgccaac gacaaaagcg cgctccacct
     2881 cgaaagaatg cgtgctcttc ctatgaaaac agcttctctt tgcagtgggc acgcagtacc
     2941 attcgctccg cacggtgcta tggagaaatg agagtccacg cggctctcgc ccatcccggg
     3001 cacatcaaca acttacttga tggagagaat caacatggca actgcgaaga aacccgtcgc
     3061 gaagaaagcg gcacctgcga agaaggcgaa agccgctccc gctaagaagg tcgctgcgaa
     3121 gaaggcagcg ccggcgaaga aggtcgtggc gaagaaggtc gctgcgaaga aggcgcccgc
     3181 gaagaagcgg accccgaacg ccgccttcat gaaggcgatg accccgagcg ccgcgctcgc
     3241 cgccatcatc ggcgacaagc cggtgccgcg gactgaggtc acgaagaaga tgtgggacta
     3301 catcaagaag aacagccttc aggaccaggc caagcgtacg atgatcaacg ccgatgccaa
     3361 actgaaggaa atcttcaaga aggcccaggt ctcgatgttc gagatgacca agctgatcaa
     3421 cagccacctg agctgagcct cttcagccca gagaaaagcc ggtgcgatgc accggctttt
     3481 ttcatgcccg cgccaggcgg cgctgcacga agtcgagccg gtcctggccc cagaacagct
     3541 cgccgtcgat gacgtagctc ggcacgccga agacgccggc ttcgatcgca cgctgcgtat
     3601 gggcgtcgta gcgctcctgg acgacgggcg cctgtgcgtc ttcgcgccgc cgcgctggaa
     3661 ggccgagggt cgcgagcatc ccggccagcg tcttcgggtc ggcgatgtcg cgctgctcgg
     3721 cccagacccc gcgcagcac
//
LOCUS       DASVHM010000594         4657 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_474954, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000594 DASVHM010000000
VERSION     DASVHM010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474954"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..260
                     /locus_tag="VF308_11120"
     CDS             <1..260
                     /locus_tag="VF308_11120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019142436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-ketoacyl-[acyl-carrier-protein] synthase
                     II"
                     /protein_id="HEX7437254.1"
                     /translation="TATPCSSTKGATGHTLGAAGGVEASICLLALQHGLLPGGLHVRE
                     LDPTLGLAYLRENRAAPLRAVLSNSFGFGGTNASLVLGAAR"
     gene            257..1081
                     /locus_tag="VF308_11125"
     CDS             257..1081
                     /locus_tag="VF308_11125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008348302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase chain length factor"
                     /protein_id="HEX7437255.1"
                     /translation="MSGFEIAVQGIGLLGPGLPSWAVGQRVLRAEESCAMTPAVLAPP
                     PRLPPAERRRAGPSIRLAMAVADEAVAQAGVDPEHLATVFASSGGEGSNCHILCETLV
                     GADRHISPTRFTNSVHNAAAGYWHIAVASQAASTSLSAYDGSFAAGLVEAAIQVQASH
                     AAVLLVACDVPYPEPLHSLRRLTHHFGLALLLAPVDAGRAVARLSIELAEAARADPHS
                     RCANAELDALRCSVPAAAALPLLEAIANGAGRRALVLDYLPALRLRVTVCTQARPS"
     gene            1078..1533
                     /locus_tag="VF308_11130"
     CDS             1078..1533
                     /locus_tag="VF308_11130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013541645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymyristoyl-ACP dehydratase"
                     /protein_id="HEX7437256.1"
                     /translation="MNAASMTHAGIAELIPHSGTMCLLASLEHWDRDRIVCTATSHRD
                     PGNPLRSASGLLAPCAIEYAAQAMALHGALIGRAAGAAASPGYLASARGVRLHRLRLD
                     DLAGDLRIEARRDAGDARQIIYAFDVSHAGVPVADGRATVVLNTVIPSI"
     gene            1530..2279
                     /gene="fabG"
                     /locus_tag="VF308_11135"
     CDS             1530..2279
                     /gene="fabG"
                     /locus_tag="VF308_11135"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEX7437257.1"
                     /translation="MNTLAGKRALVTGASGGIGRAIAERLARDGAHVIVHANTRLELA
                     ESIVAEIRAACGSAEACAFDLTDRAASHAACERLLEDGPVQILVNNAGTHADAAFPAL
                     REAQWQQVIDVSLNGFFHVTQPLTMPMIRTRWGRIVNISSLAAIAGNRGQVNYAAAKG
                     ALNSATKALALEVASRGITVNAVAPGIIATGMAAADRASGGFDAAMIERMVPMKRAGT
                     AAEVAALVAFLASPDASYISGQIISVNGAMY"
     gene            2289..3902
                     /locus_tag="VF308_11140"
     CDS             2289..3902
                     /locus_tag="VF308_11140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 7-halogenase"
                     /protein_id="HEX7437258.1"
                     /translation="MDNDQTHDVVILGGGLAGLTLALQLRQRLPELGVLVLERRNHPV
                     PEAAHKVGESSVEIAAHYFGKVLGLEEHLRMTQLKKFGFRFFFSDGSDSIDAVTELGA
                     STFLATPSWQIDRGIFENDLGAIVRDRGVDFIDGATVKGFDLGDGSAPHRVRYEAADG
                     AHEARARWLVDATGRAGLLKRRLDLAEPNEHDVNAVWFRIGARIDVDEWSDDPAWLAR
                     CDPPKRWLSTNHLVGEGYWVWLIPLASGSHSVGIVADATMHPLETMDSFEKAMAWLEQ
                     HQPRLHRDLQGKRDLLQDFAFFRHFSYGCRQVFDGARRWALTGEAGLFLDPFYSPGGD
                     FIAIANTYITELVAQDLAGARTALYADVYQRVYFSFYRAMLPIYVGQYGLFGDPQVLP
                     VKVLWDYTYYWGVMCQLFFQRRLTDLAALGRLQKPLANAERLNVEMQKFLRAWGALSD
                     RRNPARMLDQAGLPWFAELNRGLDDKLDDAAFQRRMVETFAQLATLAQQIVGRATEAH
                     PGLDGAALLALLDSGAQRGTASMLFAEVA"
     gene            complement(3910..>4657)
                     /locus_tag="VF308_11145"
     CDS             complement(3910..>4657)
                     /locus_tag="VF308_11145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012747786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX7437259.1"
                     /translation="PSYNPGPKVYETVRAARAQWSPVWVVVDGSTDGSAEGLLALPAG
                     DPGLRVLVLPANRGKGAAVLHGFEAARAAGYTHALTMDSDGQHPADLIGAFMAASADR
                     PDAMVLGRPVFDASAPLLRVRGRRISNWWTDLETLGAGIDDSLYGFRVYPIAALIEVM
                     RRQRWMRRFDFDTEAVVRLAWRGVVPINIAAPVKYLSAAEGGVSHFRYGRDNLLLTWM
                     HARLMLGFVLRLPLLVARRLAGRPPFAKRR"
BASE COUNT          699 a         1742 c         1558 g          658 t
ORIGIN      
        1 gcaccgcgac gccgtgcagc tcgaccaagg gcgcaaccgg gcacacgctc ggcgccgcag
       61 gcggggtcga ggcgtcgatc tgcctgctcg ccttgcagca cgggctgctt ccgggcggcc
      121 tccatgtgcg agagctcgac cccaccctcg ggctcgccta cctgcgcgag aaccgcgcgg
      181 cgccgctgcg cgccgtgctg agcaactcgt tcggcttcgg cggcaccaat gccagtctcg
      241 tgctcggagc tgcgcgatga gcggattcga gatcgcggtg caaggcatcg gcctgctcgg
      301 ccccggactg ccgtcctggg cggtcgggca aagggtgctg cgcgccgaag agtcctgcgc
      361 gatgacgccg gccgtgctcg cgcctccgcc gcggctccca cccgcggagc ggcgccgggc
      421 cgggccgtcg atccgcctcg ccatggcggt cgccgacgag gcggtcgccc aggccggggt
      481 cgatcccgaa catctcgcga ccgtgttcgc ctcgtccggc ggcgaaggct ccaactgcca
      541 catcctctgc gaaacgctgg tgggcgccga ccgccacatc tcgccgaccc gcttcaccaa
      601 ttcggttcac aacgccgcgg cgggctattg gcacatcgcg gtcgcgagcc aagccgcctc
      661 gaccagcctg agcgcctacg acggcagctt cgcggccggg ctggtcgaag cggcgataca
      721 agtccaggcc agccacgcag ctgtgctgct ggtcgcctgc gacgtcccct atccggaacc
      781 gctgcacagc ctgcgccggc tcacgcatca cttcggcctc gccctgctgc tggcgccggt
      841 cgatgccggg cgggcggtcg cgcgcttgag catcgaactg gccgaggcgg cccgcgccga
      901 cccgcacagc cgctgcgcca acgccgagct ggatgcgctt cggtgcagcg tgccggccgc
      961 cgccgcgctg ccgctgctcg aagcgatcgc aaacggcgcc gggcgccgcg cgctcgtgct
     1021 cgactatctg cccgccttga ggctgcgggt cacggtgtgc acgcaagcga ggccgtcatg
     1081 aacgcggcgt cgatgacgca tgccggcatc gccgagctga ttccgcacag cggcacgatg
     1141 tgcctgctcg cgagcctcga acactgggac cgcgaccgca tcgtctgcac cgcgaccagc
     1201 caccgtgacc ccggcaaccc gctgcgcagc gcgagcggcc tgctcgcgcc gtgcgcgatc
     1261 gaatacgcgg cgcaggcgat ggccctgcac ggcgccttga tcggccgggc cgccggtgcc
     1321 gcggcaagcc cgggctatct cgccagcgcg cgcggcgtgc ggctgcatcg cctgcgcctc
     1381 gatgacctcg ccggcgacct gcgcatcgag gcccggcgcg atgcgggcga cgcgcgccag
     1441 atcatctacg ccttcgacgt gagccatgcc ggcgttccgg tcgccgacgg gcgcgccacc
     1501 gtcgtcctca acacggtgat cccctcgata tgaacaccct cgccggcaag cgcgccctcg
     1561 tcaccggtgc cagcggcggc atcggccggg ccatcgccga gcggctcgcc cgcgatggcg
     1621 cgcacgtgat cgtgcatgcg aacacgcgcc tcgagctcgc cgaaagcatc gtcgcggaaa
     1681 tccgcgccgc ttgcggctcc gccgaggcct gcgccttcga tctgaccgac cgcgcggcga
     1741 gccatgcggc ctgcgaacgc ctgctcgagg acggtccggt gcagatcctc gtcaacaacg
     1801 ccggtacgca cgccgacgcc gccttcccgg cgctgcgcga agcgcagtgg cagcaggtga
     1861 tcgacgtctc cctgaacggc ttcttccacg tgacgcagcc gctgacgatg ccgatgatcc
     1921 gcacgcgctg gggccgcatc gtcaacatct cgtcgctcgc cgcgatcgcg ggcaaccgcg
     1981 gccaggtcaa ctacgccgcg gccaagggcg ctctcaacag cgcgaccaag gcgctcgcgc
     2041 tcgaggtggc gagccgcggc atcaccgtca acgcggtcgc gccgggcatc atcgccacgg
     2101 gcatggcagc cgccgaccgg gcctcgggcg gcttcgacgc agccatgatc gaacgcatgg
     2161 tgccgatgaa gcgcgccggc accgcggccg aagtggcggc gctggtggcg tttctcgcct
     2221 cgcccgacgc gagctacatc agcggccaga tcatctccgt gaacggcgcg atgtactaga
     2281 gagcggcgat ggacaacgat caaacccacg acgtcgtcat cctcggcggc ggcctcgcgg
     2341 gcctgacgct cgcgctgcag ctcaggcagc gcctgcccga actcggcgtg ctagtgctcg
     2401 agcggcgcaa ccacccggtg ccggaggcgg cgcacaaggt cggcgagtcc tcggtcgaga
     2461 tcgcggcgca ctatttcggc aaggtgctcg gcctcgagga gcacctgcgc atgacgcagt
     2521 tgaagaagtt cggcttccgc ttcttcttct cggacggctc cgactcgatc gacgccgtca
     2581 ccgaactcgg cgcgagcacg ttcctcgcaa cgccgagctg gcagatcgac cgcggcatct
     2641 tcgagaacga cctgggggcg atcgtgcgcg atcggggcgt cgacttcatc gacggcgcca
     2701 cggtgaaggg cttcgacctg ggcgacggca gcgcgccgca ccgcgtgcgc tacgaggcgg
     2761 ccgacggcgc gcacgaagcg cgggcgcgct ggctcgtcga cgcgaccggc cgggcggggc
     2821 tgctgaagcg gcgcctcgac ctggccgagc ccaacgaaca cgatgtcaac gccgtctggt
     2881 tccggatcgg cgcgcgcatc gacgtcgacg agtggtccga cgacccggcc tggctcgccc
     2941 gttgcgaccc cccgaagcgc tggctctcga ccaaccacct tgtcggcgag ggctactggg
     3001 tctggctgat cccgctcgcc tcgggctctc attcggtggg catcgtcgcc gacgcgacca
     3061 tgcacccgct cgagacgatg gacagcttcg agaaggcgat ggcctggctc gaacagcacc
     3121 agccgcgcct gcaccgcgac ctgcagggca agcgcgacct cctccaggac ttcgccttct
     3181 tccgccactt ctcgtacggc tgccggcagg tgttcgacgg agcccggcgc tgggccctga
     3241 ccggcgaagc cgggctcttc ctcgatccgt tctattcgcc gggcggcgac ttcatcgcga
     3301 tcgcaaacac ctatatcacc gaactcgtcg cgcaagacct ggccggcgcg cgcaccgcgc
     3361 tctacgccga cgtctatcag cgcgtctatt tctcgttcta ccgggcgatg ctgccgatct
     3421 acgtcgggca gtacggcctc ttcggcgacc cgcaggtcct gccggtcaag gtgctctggg
     3481 actacaccta ctactggggc gtgatgtgcc agctcttctt ccagcgccgg ctcaccgacc
     3541 ttgcggcgct cggccgcctg cagaagccgc tcgccaacgc ggagcggctg aacgtcgaaa
     3601 tgcagaagtt cctgcgcgcc tggggcgcgc taagcgatcg ccgcaacccc gcgcgcatgc
     3661 tcgaccaggc cggcttgcca tggttcgccg aactcaaccg cgggctcgac gacaagctcg
     3721 acgacgcggc cttccagcgg cgcatggtcg agaccttcgc ccagctcgcc acgctcgccc
     3781 aacagatcgt cgggcgcgcg accgaggccc atcccgggct cgacggggcg gcgctgctcg
     3841 ccctgctcga ctccggcgcg caacgcggca cggcctcgat gctgttcgca gaagtcgcct
     3901 gagcgtgcct cagcgacgct tcgcgaaagg cggtctgccg gcgaggcgcc gtgccacgag
     3961 cagcggcagg cgcagcacga agccgagcat caggcgcgcg tgcatccagg tcagcagcag
     4021 gttgtcgcgg ccatagcgga agtgcgagac gccgccttcg gcggcgctca ggtatttcac
     4081 cggcgcggcg atgttgatcg gcaccacgcc gcgccaggcg agccgcacga ccgcttcggt
     4141 gtcgaagtcg aagcggcgca tccagcgctg gcgccgcatc acctcgatca acgcggcgat
     4201 cgggtagacc cgaaagccat agagcgagtc gtcgatgccc gcgccgagcg tctcgagatc
     4261 ggtccaccag ttcgagatgc gacgtccgcg cacgcgcagc agcggcgccg acgcatcgaa
     4321 taccggccgc ccgagcacca tcgcatcggg acggtccgcc gaagcggcca tgaacgcgcc
     4381 gatcaaatcg gccgggtgct ggccgtcgga gtccatcgtc aatgcatgcg tatagccggc
     4441 cgcgcgcgcc gcctcgaagc cgtgcagcac cgccgcgccc ttgccgcgat tggcgggaag
     4501 caccagcacc ctcagccccg gatcgccagc cggcagggcg agcagcccct cggcactgcc
     4561 atcggtgctg ccatcgacga ccacccacac cggcgaccac tgcgcccgtg ccgcccgcac
     4621 cgtctcgtag accttgggac cggggttgta gctcggg
//
LOCUS       DASVHM010000595         1597 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1269594, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000595 DASVHM010000000
VERSION     DASVHM010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1269594"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..717)
                     /locus_tag="VF308_11150"
     CDS             complement(<1..717)
                     /locus_tag="VF308_11150"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX7437260.1"
                     /translation="MTVCEALRQPFLHLREVAGGAACARWCAAADRRIVEARAAVGED
                     ADWSASSSSLRLRAVAEIEPDEVWRVVWRDPLRSTCAALLGPRLVCDLDQAWVRRQYA
                     PAHAPRLHHAHSWHQDGALGFDFRAHADPPFPADALLEMVTAWIALVPCGVDAPGLEL
                     AAQSPGALLAPTELTADRVGARFAPDRLHRPALAAGDALVFRGDIVHRTHVAPAMTRD
                     RTSLELRFFAADRIPARLRGE"
     gene            complement(714..1501)
                     /locus_tag="VF308_11155"
                     /pseudo
     CDS             complement(714..1501)
                     /locus_tag="VF308_11155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009517566.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
     gene            complement(1501..>1597)
                     /locus_tag="VF308_11160"
     CDS             complement(1501..>1597)
                     /locus_tag="VF308_11160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEX7437261.1"
                     /translation="GYSTPEHLAALRRHGACRHHRRSFAPVRDVL"
BASE COUNT          250 a          567 c          579 g          201 t
ORIGIN      
        1 ctcgccccgc agccgggcgg ggatccgatc ggcagcgaaa aatctcaatt cgagactggt
       61 ccggtctcgc gtcatcgcgg gcgcgacatg ggtgcggtgc acgatgtcgc cgcgaaacac
      121 gagggcatcg cccgctgcca gcgcggggcg atgtaggcgg tccggtgcaa agcgtgcgcc
      181 gacgcgatcg gccgtgagtt cggtcggcgc cagcagagcg cccggagatt gcgccgccag
      241 ttcgagaccg ggcgcgtcga cgccgcaagg cacgagcgcg atccaggcag tgaccatctc
      301 gagcagcgcg tcggcgggaa acggcgggtc cgcatgagcg cgaaagtcga agccgagggc
      361 tccgtcctgg tgccaggagt gcgcgtggtg caggcgcggc gcgtgcgccg gggcgtattg
      421 gcggcgtacc caggcctggt cgaggtcgca gacaaggcgc ggaccgagca gggctgcgca
      481 ggtactgcgc agcgggtcgc gccagacgac gcgccagacc tcgtcgggct cgatttccgc
      541 cacggcgcgc aagcgcagcg acgaactcga agccgaccag tcggcgtctt cgccgaccgc
      601 ggcgcgggct tcgacgattc gacggtcggc ggctgcgcac cagcgcgcgc atgcagcgcc
      661 gccggccacc tcgcgcaggt gcaggaaggg ttggcgcagc gcctcgcaca ccgtcattgc
      721 cgggatgcca ggcgctggcg cgccgattcg tacatgcaga ccgcggccgc gaccgccacg
      781 ttgagcgact cctcgccgcc cggctgcgcg atgcgcagcg tcgtttcgca gcgccgcatc
      841 agcggttcgg cgaggccttg cccctcgtgc cccatcaccc aggcgcacgg ccagggcagc
      901 agtgcttcgt gcagcagcgc gcgcgtgtgc gagctggtcg cgaacatcgg cacctgcatt
      961 gcatccagcg cttcatcgcc cgcgccatcg accaggttga gagcgaaatg ggcccccatg
     1021 ccggcgcgca gcaccttggg tgaccacagg gccgcggtgc ccttgagcgc caccacctgg
     1081 gcgaagccga aggcggccgc gctgcgcagg atcgtgccga cgttgcccgc atcctggagc
     1141 cgatcgagca cgatgctcgg cgcatcggca tgcacactgc cggcacccgg ccacgggctg
     1201 acgaaggcga gcggcgcggg cgactccaag gcgccgaggc cggccatgac cgcgtcgggc
     1261 agcaccgcca ccctttcggc cgcgctggcg agttggcgca gcgcagcaat cccccaggcc
     1321 gtcgcgccga tgacgacctg acgcccgcgc cgcctcgaag ctcgagccag gcccggcaga
     1381 gatgctcgcc ctcgagccag acctcgcctt gcctgcggta cgcgtcaggc tgcgcggcaa
     1441 gtttgcgcag gcgaaccagc agcgggttgt cgcgcgacgt gatcgcggtg accttcggca
     1501 tcagagtacg tcgcgcaccg gcgcaaagct gcgccgatga tggcgacacg cgccgtgccg
     1561 gcgcaaggcc gccagatgct cgggcgtcga atagccc
//
LOCUS       DASVHM010000596         3926 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1053379, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000596 DASVHM010000000
VERSION     DASVHM010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3926
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1053379"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..575
                     /locus_tag="VF308_11165"
     CDS             <1..575
                     /locus_tag="VF308_11165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437262.1"
                     /translation="LGLARALGARRFEAQVLGVDAVLAVRRGDRDRARRIAAEAIAVC
                     REHGMGHIGPWIHGVCALVESDREARLVWLEQGERQLALGCVSHNHVQLRELAIDTLL
                     EIGDSAGVERECARIRDYTARESLPMSEFVMARGLALVRFARGERGTDLLAGLRRLRA
                     SGAELELNTFLPALDAALGAFDAPGATSAP"
     gene            583..1047
                     /locus_tag="VF308_11170"
     CDS             583..1047
                     /locus_tag="VF308_11170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HEX7437263.1"
                     /translation="MSLPVSTATGDGPRIVLDTNAVLDWLYFRDPRCAGLAEAVAAGR
                     VRWIASAAMQDEIEHVLLRGSLGDRWPEGPASVRDGWQRWATMVEAEPPASPALLRCT
                     DADDQKFIDLALDVRAAALLSADRAVLRLARRATGWGLAITTVERWRIVPIA"
     gene            complement(1119..>3926)
                     /locus_tag="VF308_11175"
     CDS             complement(1119..>3926)
                     /locus_tag="VF308_11175"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019658332.1"
                     /note="DNA-dependent RNA polymerase catalyzes the
                     transcription of DNA into RNA using the four
                     ribonucleoside triphosphates as substrates. Subunit beta'
                     binds to sigma factor allowing it to bind to the -10
                     region of the promoter; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEX7437264.1"
                     /translation="RTLMLASNNVLFPANGEPSIVPSQDVVLGLYYATRERINGKGEG
                     IIFADVAEVQRALDNEQVEVTAKVTVRLTEYEKDKDSGEFTAVTKLVDTTVGRALLSE
                     ILPKGLPFSNLNRALKKKEISKLINTSFRKCGLKETVVFADKLLQAGFRLATRAGISI
                     CIDDMLVPKEKPGLIERAEKEVKEIEQQYVSGLVTSGERYNKVVDIWGKTGDEVGKVM
                     MAQLSKQKTTDRHGKQVDQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSII
                     ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVIEND
                     CQTMNGLNMRALVEGGEVIESLRDRALGRVAAVDILDPETQRTIVPAGEMLDEDTLDA
                     LEAAAVDEVKVRTALTCGTRFGICAKCYGRDLGRGGLVNVGEAIGVIAAQSIGEPGTQ
                     LTMRTFHIGGAASRAAVASGVEAKSEGTVGFNPTMRYVTNGKGELVVISRSGEIIIAD
                     PHGRERERHKVPYGALLGIKPDQQVKAGALLASWDPLTRPIITEFAGRAKFENVEEGV
                     TVAKQLDEVTGLSTLVVIDPKRRGATKVVRPQVKLLDPAGNEVKIPGTDHSVTIAFPI
                     GSLIQIRDGQDLAPGEVMARIPVEGQKTRDITGGLPRVAELFEARTPKDKGTLAEMTG
                     TVSFGKETKGKVRLQITDPEGKVYEELVLKEKNIVVHEGQVVNKGESIVDGPADPQDI
                     LRLLGMEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQISNPGDTAYILGE
                     QVERSELLGKNDKMLAEGKLPATHIDVLLGITKASLSTDSFISAASFQETTRVLTEAA
                     IMGKRDELRGLKENVIVGRLIPAGTGMAFHEARKAKEAMDDAERRAIAVQEAEELAAV
                     QMQQVDAASDAAAAAATAATE"
BASE COUNT          525 a         1375 c         1327 g          699 t
ORIGIN      
        1 cgctcggcct cgcacgcgca ctcggcgccc gacgtttcga ggcgcaggtg ctcggcgtgg
       61 acgccgtgct cgccgtgcgc cgcggcgacc gcgaccgggc ccgacggatc gcggccgagg
      121 cgatcgccgt ctgccgcgag cacggcatgg gccacatcgg accgtggatc cacggcgtgt
      181 gcgccctggt cgaaagcgat cgcgaggcgc ggctcgtctg gctcgagcaa ggcgagcgac
      241 agctcgcgct cggctgcgtc agccacaacc acgtccagtt gcgcgagctg gccatcgata
      301 cgctgctcga gatcggcgac agcgcaggcg tcgagcgcga atgcgcgcgg atccgcgact
      361 acaccgcccg ggaatccttg ccgatgagcg agttcgtcat ggcgcgcggc ctcgcgctcg
      421 tgcgcttcgc ccggggcgaa cgcggcacgg acttgctggc cgggttgcgc cgcttgcgtg
      481 cctccggcgc ggagttggag ctgaacacct tcctgcccgc gctcgacgcg gcgctcggag
      541 ccttcgacgc gcctggcgcg acgtcggcgc cgtgacctcg ccgtgtcgct gcccgtgtcg
      601 acggcgactg gcgacggacc gcggatcgtc ctcgacacca acgcggtgct cgactggctc
      661 tacttccgcg accctcgctg cgcgggcctg gcggaggcgg tggcggcggg ccgcgtccgc
      721 tggatcgcca gcgcggcgat gcaggacgag atcgagcacg tgctgctgcg cggcagcctc
      781 ggcgaccgct ggcccgaagg cccggcgtcg gtgcgcgacg gctggcagcg ctgggcgacg
      841 atggtcgagg cggagccgcc ggcgtcgccc gccctgctgc gctgcaccga cgccgacgat
      901 cagaagttca tcgatctcgc cctcgacgtt cgcgccgcgg cgctgctgag cgcggaccgg
      961 gccgtgctgc gcctggcacg tcgcgcgacc gggtgggggc tcgcgatcac gaccgtcgag
     1021 cgctggcgga tcgttccgat cgcgtagttc gacgcgccaa aaaaagggca gcccgcaggc
     1081 tgcccttcga tcgctcggcc cgagaggacc gaaatcgctt actcggtcgc tgccgtcgcg
     1141 gcggccgccg cggcatcgct cgccgcatcg acctgctgca tctgcaccgc cgcgagctcc
     1201 tcggcttcct ggacggcgat ggcgcggcgc tcggcgtcgt ccatcgcttc cttggccttc
     1261 ctcgcctcgt ggaaagccat gccggtgccg gcggggatga gccggccgac gatgacgttt
     1321 tccttgagac cacgcagctc gtcgcgcttg cccatgatcg ccgcttcggt gaggacccga
     1381 gtcgtctcct ggaacgacgc cgccgagatg aagctgtcgg tcgacagcga cgccttggtg
     1441 atgccgagca ggacgtcgat gtgggtcgcg ggcagcttgc cctcggccag catcttgtcg
     1501 ttcttgccca gcaactccga tcgctcgacc tgctcgccga ggatgtacgc cgtgtcgccc
     1561 ggattcgaga tctgcacgcg ccgcagcatc tggcgaacga tcacctcgat gtgcttgtcg
     1621 ttgatcttca cgccctggag gcgatagacg tcctgcacct cgtcgacgat gtagcgcgcg
     1681 agctcttcca tgccgagcag acgcaggatg tcctgcgggt cggccggccc gtcgacgatc
     1741 gactcgccct tgttgaccac ctggccctcg tggaccacga tgttcttttc cttcaggacg
     1801 agctcttcgt agaccttgcc ttccgggtcg gtgatctgca gccgcacctt gcccttggtc
     1861 tccttgccga acgagaccgt tccggtcatc tcggcgagcg tgcccttgtc ctttggcgtg
     1921 cgcgcctcga agagctcggc cacgcgcggc aggccgcccg tgatgtcgcg cgtcttctgg
     1981 ccctcgaccg ggatccgcgc catcacctcg ccgggggcga gatcctggcc gtcgcggatc
     2041 tggatcagcg agccgatcgg gaaggcgatc gtcaccgagt ggtcggttcc ggggatcttc
     2101 acttcgttgc ctgccggatc gaggagcttg acctgcgggc ggacgacctt ggtcgcgccg
     2161 cgccgcttcg ggtcgatgac gaccagcgtc gacaggcccg tgacctcgtc gagctgcttg
     2221 gccaccgtga cgccttcctc gacgttctcg aacttcgccc ggccggcgaa ctcggtgatg
     2281 atcggccgcg ttagcgggtc ccagctcgcg agcagcgcgc cggccttgac ctgctggtcg
     2341 ggcttgatgc cgagcaacgc gccgtaaggc accttgtggc gctctcgctc gcggccgtgc
     2401 gggtcggcga tgatgatctc gccggagcga gagatcacga ccagctcgcc cttgccgttg
     2461 gtcacgtagc gcatcgtcgg gttgaagccg accgtgcctt ccgacttggc ctcgacgccc
     2521 gacgccaccg ccgcgcgcga tgccgcgccg ccaatgtgga acgtgcgcat cgtcagctgc
     2581 gtgcccggct cgccgatcga ctgcgcggcg atgacgccga tcgcttcgcc gacgttgacc
     2641 aggccgccgc ggccgaggtc gcggccgtag cacttggcgc agatgccgaa gcgcgtgccg
     2701 caggtgagcg cggtgcgcac cttgacctcg tcgaccgccg ccgcctcgag cgcgtcgagg
     2761 gtgtcctcgt cgagcatctc gccggccgga acgatcgtcc gctgcgtctc cggatcgagg
     2821 atgtcgaccg cggcgacgcg acccaacgcg cggtcgcgca ggctctcgat cacctcgccg
     2881 ccctcgacga gggcgcgcat gttgaggccg ttcatcgtct ggcagtcgtt ctcgatcacg
     2941 accaagtcct gcgtcacgtc gacgagtcgg cgcgtgagat acccggagtt cgccgtcttc
     3001 agcgccgtgt ccgcgaggcc cttgcgggcg ccgtgggtcg agatgaagta ctgcaggacg
     3061 ttcaggccct cgcggaagtt cgccgtgatc ggcgtctcga tgatcgagcc gtcgggcttg
     3121 gccatcaggc cgcgcatgcc ggcgagctgg cgaatctgcg ccgcagaacc gcgcgcaccc
     3181 gagtcggcca tcatgtagat ggagttgaac gactcctggt cgacctgctt gccgtggcgg
     3241 tcggtcgtct tctgcttgga gagctgggcc atcatgacct tgcccacctc gtcaccggtc
     3301 ttgccccaga tgtcgacgac cttgttgtag cgctcgcccg aagtgacgag gcccgagacg
     3361 tactgctgct cgatctcctt gacttccttc tcggcgcgct cgatcaggcc gggcttttcc
     3421 ttcggcacca gcatgtcgtc gatgcagatc gagatgccgg cgcgcgtcgc caggcggaag
     3481 cccgcctgca gcagcttgtc ggcgaagacg accgtctcct tcagcccgca cttgcggaac
     3541 gacgtgttga tgagcttgga gatttccttc ttcttgagcg cccggttcag gttcgagaac
     3601 ggcaggccct tgggcaggat ctccgagagc agggcacggc cgaccgtcgt gtcgaccagc
     3661 ttggtcaccg cggtgaactc gcccgagtcc ttgtccttct cgtattccgt caggcgcacc
     3721 gtgaccttcg ccgtcacctc gacctgctcg ttgtcgagcg cgcgctgcac ctcggcgacg
     3781 tcggcgaaga tgatcccctc gcccttgccg ttgatgcgct cgcgcgtggc gtagtacagg
     3841 cccagcacga cgtcttgcga cggcacgatc gacggctcgc cgttggccgg gaacagcacg
     3901 ttgttcgacg ccagcatcag cgtgcg
//
LOCUS       DASVHM010000597         2506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1269654, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000597 DASVHM010000000
VERSION     DASVHM010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1269654"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1358)
                     /gene="guaB"
                     /locus_tag="VF308_11180"
     CDS             complement(<1..1358)
                     /gene="guaB"
                     /locus_tag="VF308_11180"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEX7437265.1"
                     /translation="MRVLGKALTFDDVLLVPAFSQILPRDTSLATSLSRNIRLNLPLV
                     SAAMDTVTESRLAIAVAQEGGIGIVHKNMTARQQAAEVARVKRYESGVLRDPITVTPD
                     LTVREVMELSRQHGVSGFPVLKGKTVVGIVTNRDLRFETRLDAPVKDIMTPRDRLVSV
                     REGATLAEGKALMHSHKLERVLVVNDAFELRGLMTVKDITKQTSFPNAARDAHGKLRV
                     GAAVGVGEGTDERVELLVKAGVDVLVVDTAHGHSEGVLDRVRWVKRNFPGVDVIGGNI
                     ATGAGALALVEAGADAVKVGIGPGSICTTRIVTGVGVPQVMAIDAVSRAIRGSGVPLI
                     ADGGVRFSGDLAKAIAAGADSVMMGGAFAGTEEAPGEVILYQGRTYKSYRGMGSIGAM
                     QQGSADRYFQDEQQSQVTSTKLVPEGIEGQVPYKGSVVAIIFQMSGGLRASMHYCGCA
                     SI"
     gene            1488..2027
                     /locus_tag="VF308_11185"
     CDS             1488..2027
                     /locus_tag="VF308_11185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HEX7437266.1"
                     /translation="MARWTLALLAALLGLTLALPAQAQWKWRDSKGQTQYSDLPPPAT
                     VPEQDILSRPNAGKRRGAAQGVVAAASGVSGPLAAASGPAVAASGALAPKTVEPELEA
                     RRKKAEAEEAAKTKAEELKIAAARADNCTRAKAQMRSLDSGIRIARTNEKGEREFLDD
                     QQRADESKRTRDVIAADCK"
     gene            complement(2005..2331)
                     /locus_tag="VF308_11190"
     CDS             complement(2005..2331)
                     /locus_tag="VF308_11190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019562116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HEX7437267.1"
                     /translation="MEPAEAVPVISVKVACSARAGEAEEVTVELPAGATLLDALRASG
                     VLQRHRGIDPARQAVGIWGQLRPLDTVLRVGDRVEVYRPLQVDPKEARRLRQRQQTEA
                     TCNRRR"
     gene            complement(2318..>2506)
                     /locus_tag="VF308_11195"
     CDS             complement(2318..>2506)
                     /locus_tag="VF308_11195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX7437268.1"
                     /translation="WLFLPLAVPFDAQAKACKIEFEMRYAFANGPLEALINPVFDRIA
                     NTFVDAFVRRAEQVYGTR"
BASE COUNT          430 a          883 c          822 g          371 t
ORIGIN      
        1 tcgatgctgg cgcagccaca gtagtgcatc gacgccctca ggccgccgct catctggaag
       61 atgatggcga cgaccgaacc cttgtacggc acctggccct cgatgccttc gggcacgagc
      121 ttggtactgg tgacctggct ctgctgctcg tcctggaagt agcgatcggc cgagccctgc
      181 tgcatcgcgc cgatcgagcc catgccgcga tagctcttgt aggtgcggcc ctggtagagg
      241 atcacctcgc cgggcgcctc ttcggtgccg gcgaaggctc cgcccatcat caccgaatcg
      301 gcacccgccg cgatcgcctt ggcgaggtcg ccggaaaagc gcacgccgcc gtcggcgatc
      361 agcggcacgc cgctgccccg gatcgccctc gagaccgcgt cgatcgccat gacttggggc
      421 acaccgacgc cggtgacgat gcgcgtggta cagatcgagc ccggcccgat gcccactttc
      481 accgcgtcgg cgccggcttc gacgagcgcg agcgcgccgg ctccggtcgc gatgttgccg
      541 ccgatcacgt cgacgccggg gaaattgcgc ttgacccagc gtacgcgatc gagcacgcct
      601 tcgctgtggc catgcgccgt gtcgacgacc agcacatcga cgccggcctt gacgagcaac
      661 tcgacccgct cgtcggtgcc ctcgccgaca ccgaccgcag cgccgacgcg gagcttgccg
      721 tgcgcgtcgc gggccgcatt cggaaagctg gtctgcttgg tgatgtcctt gacggtcatc
      781 aggccgcgca gctcgaacgc atcattgacc actagcacgc gctcgagctt gtgcgaatgc
      841 attagcgcct tgccttcggc gagcgtcgca ccctcgcgca cgctgacgag ccgatcgcgc
      901 ggggtcatga tgtccttgac cggcgcgtcg agacgggtct cgaagcgcag gtcgcgattc
      961 gtcacgatgc cgaccaccgt cttgcccttg agcaccggaa agccggagac gccgtgctgt
     1021 cgggacagct ccatgacctc gcgcaccgtg agatcgggcg tgaccgtgat cggatcgcgc
     1081 agcacgcccg attcatagcg cttcacgcgc gcgacctcgg ccgcctgctg ccgcgccgtc
     1141 atgttcttgt gaacgatgcc gatgccgcct tcctgcgcca ctgcgatcgc caggcgcgat
     1201 tcggtgacag tgtccatcgc ggccgacacc agcggcaggt tgagccggat gttgcgagac
     1261 agcgaggtcg cgaggctggt gtcgcggggc aggatctgag agaaggccgg aaccagcaac
     1321 acgtcgtcga aggtcagcgc tttgccaaga acgcgcatga gaaatgctcc agacgcaaaa
     1381 gcgaattata cggatgcgcg gacaatctga cgcttcgccg cggcgcgggt ccccaagccc
     1441 ggggcgcacc gctacacttc gccccaatct cacgcaccgg ttgaaccatg gctcgatgga
     1501 ctctcgcgct cctcgccgcg ctgctcggcc tgacgctggc gctgccggcg caggcgcaat
     1561 ggaaatggcg cgacagcaaa ggccagaccc agtacagcga cctgcccccg ccggcgacgg
     1621 tgcccgagca ggacatcctg tcgcggccga acgccggcaa acggcgtggc gccgcgcagg
     1681 gggtggttgc ggcggcctcg ggggtgtcgg gcccgctcgc cgcggcgagc ggcccagccg
     1741 ttgcggcgtc cggggctctc gcgcccaaga ccgtcgaacc cgaactcgaa gccaggcgca
     1801 agaaggccga agccgaggag gcggccaaga ccaaggccga agagctcaag atcgcggcgg
     1861 cacgggccga caactgcacc cgcgccaagg cccagatgcg ctcgctcgac agcggcatcc
     1921 gcatcgcccg gaccaacgag aagggggagc gcgaattcct cgacgatcag cagcgcgccg
     1981 acgaatccaa gcgcacgcgc gacgtcatcg ccgccgattg caagtagctt ctgtctgctg
     2041 gcgctggcgc agccgccgcg cctctttcgg atcgacctgc agcgggcgat agacctcgac
     2101 ccgatcgccg acccgcagca cagtgtcgag agggcgcagc tggccccaga taccgaccgc
     2161 ctgtcgggcc ggatcgatgc cccgatggcg ttgcaggacg ccgctggccc gcagcgcatc
     2221 aaggagcgtc gccccggccg gcagttcgac cgtcacttcc tccgcttcgc ccgcacgcgc
     2281 gctgcaagcc accttcacgc tgatgacggg caccgcctca gcgggttcca tagacctgct
     2341 cggcacggcg cacgaaggca tcgacgaagg tgttggcgat gcggtcgaac accgggttga
     2401 tcagcgcttc gagcgggccg ttcgcaaacg catagcgcat ctcgaactcg atcttgcagg
     2461 ccttcgcctg ggcatcgaaa ggcacggcca gcggcaggaa tagcca
//
LOCUS       DASVHM010000598         1920 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1126302, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000598 DASVHM010000000
VERSION     DASVHM010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1126302"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            384..1187
                     /locus_tag="VF308_11200"
     CDS             384..1187
                     /locus_tag="VF308_11200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015012489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crotonase/enoyl-CoA hydratase family protein"
                     /protein_id="HEX7437269.1"
                     /translation="MAVRVEKVGRVTTVIHARPEARNAMDPDSADALVEAFLAFDDDP
                     DADVAVLYGDGGAFCAGWDLKYGASLRDDASPLAALDFPTDRTTRPPRGPLGPTRLEL
                     GKPVIAAVAGPAVAGGMELALWCDIRVMETTAYLGVYCRRWGIPLLDGGTVRLPRLVG
                     QGRALEIILTGRKVSAEECLRIGACERVVPTGMARREAEALAQEIARFPQECVRADLR
                     SVHLQHGRPVRDALEREWANGVAVVEAEGVHGAARFAGGVGRHGDYSKI"
     gene            1319..>1920
                     /locus_tag="VF308_11205"
     CDS             1319..>1920
                     /locus_tag="VF308_11205"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014414.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX7437270.1"
                     /translation="MSAESFFRDLLPKADIAVDGPAPWDLQVHDTRAWERILRDGSVG
                     FGEAFMDGWLDCERVDLLAERIYRADLLTQIETRSALVEAFKARLNPFGSRARSFEIG
                     EVHYDTGNDLFEAMLDGHMVYSCGYWQRARTLEAAQRDKLELICRKLEIEPGMRLLDI
                     GCGWGGLARYAVEHHGAQVVGITVSKEQLELGQRRSAGLP"
BASE COUNT          285 a          664 c          679 g          292 t
ORIGIN      
        1 ggcgacacgg ctgacgccga cgacgatcag cagcccgagc gagacgtgca gcagcacgag
       61 cggcaccacg aaggcaaggt ggcggagcga ccccggcgcc acggactccg cggtcaccgc
      121 gctcgtggtc acgaatctcg aagtgccagg catcgaagat cctccttcga gggtcctgtt
      181 gttgttgggc gcactcggga acctccgcac gactcgcctc tcggcatgct agccggccgt
      241 cgttcggagc gtcccgagaa taacctcgat cccgggccgg caccatcggg gaaccgccgg
      301 actgccagcc tcttcaggtc gcgcgctttt cacgtatcgt ccacgtcgcg cggcaacctt
      361 cccgcgcaac gacggaggca ccgatggcag tgcgagtcga gaaagtgggc cgcgtcacga
      421 cggtcattca cgcccgcccc gaggcgcgca acgcgatgga tcccgactcg gccgacgccc
      481 tagtcgaggc cttcctcgcc ttcgacgacg acccggatgc ggacgtcgcc gtgctctacg
      541 gcgacggcgg tgcgttctgc gccggctggg atctgaagta cggcgcctcg ctgcgcgacg
      601 atgccagccc gctcgccgcg ctcgacttcc ccaccgaccg caccactcgg ccgccgcgcg
      661 gcccgctcgg cccgacccgg cttgagctcg gcaagccggt gatcgccgct gtcgccgggc
      721 cggcggtcgc aggcgggatg gagctcgccc tctggtgcga catccgcgtg atggagacca
      781 ccgcctacct cggcgtttat tgccggcgct ggggcatccc gctgctcgac ggcggcacgg
      841 tgcggctacc gcggctcgtt ggccaggggc gggcgctcga aatcatcctt accggccgca
      901 aggtgagtgc cgaggagtgc ctgcgcatcg gagcgtgcga gcgcgtggtg ccgaccggca
      961 tggcgcgccg cgaggccgag gcgctggccc aggagatcgc ccgcttcccg caggaatgcg
     1021 tgcgcgccga cctgcgctcg gtgcatctcc agcatggccg gccggtgcgc gacgcgctcg
     1081 agcgcgaatg ggcgaacggt gtcgcggtgg tcgaggccga gggcgtgcat ggcgcggcac
     1141 gctttgccgg cggcgtcggc cgccacggcg actattcgaa gatctgatcg ttgggaggaa
     1201 tgcgcgagcg ccgggtcgcg atccgactgt gaggaattgg gggggcgccc cgcgctcgcg
     1261 accgatcgtg aagcgccgcg gcgtttcgcg cttatcaagc gttcgagcaa gggacgacat
     1321 gtctgccgaa tctttttttc gagacctcct gcccaaggcc gacatcgcgg tcgacgggcc
     1381 tgcaccgtgg gacttgcagg tccacgacac gcgcgcctgg gagcgcatcc tgcgcgacgg
     1441 cagcgttggc ttcggggagg cgttcatgga cggctggctc gactgcgagc gggtcgacct
     1501 gctggccgag cgcatctacc gtgccgacct gctgacgcaa atcgagaccc gctcggccct
     1561 ggtcgaggcg ttcaaggcgc gcctcaaccc gttcggctcg cgtgcgcgct cgttcgagat
     1621 cggcgaagtc cactacgaca ccggcaacga cctgttcgag gctatgctcg acgggcacat
     1681 ggtgtattca tgcggctact ggcagcgtgc ccgaacgctc gaggccgcgc agcgcgacaa
     1741 gctcgagctg atctgccgca agctcgagat cgagcccggc atgcggctgc tcgacatcgg
     1801 ctgcggctgg ggcggcctcg cgcgctacgc cgtcgagcac catggcgcgc aggtggtcgg
     1861 catcacggtc tcgaaggagc agctcgagct cgggcagcgg cgctcggccg ggctgccgat
//
LOCUS       DASVHM010000599         1982 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_836876, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000599 DASVHM010000000
VERSION     DASVHM010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1982
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_836876"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..786
                     /locus_tag="VF308_11210"
     CDS             <1..786
                     /locus_tag="VF308_11210"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEX7437271.1"
                     /translation="RAYFEKPRTTVGWKGFINDPHLDGSFAINEGLERARRLLLDLTT
                     LGVPTGTEFLDLLSPQFIAELVAWGAIGARTTESQSHRQLASGLSCPVGFKNGTDGST
                     QVAADAILAARAPHAFMGMTKMGVAAIFETRGNDDCHIILRGGRTPNYDDAGVAASCA
                     VLRAAGLRQQVMVDVSHGNSGKRHERQIAIATELAQRIAAGERRIFGLMIESHLAAGR
                     QDLVPGVPLKHGVSITDACIGFDQTVPVLRSLAAAVAARRRLG"
     gene            complement(853..1461)
                     /locus_tag="VF308_11215"
     CDS             complement(853..1461)
                     /locus_tag="VF308_11215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019701408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HEX7437272.1"
                     /translation="MSHSLSRLACAAVAALSLGAMHGTASAQASDPFIGQIMCAGFNF
                     APRGWAELNGQLLPIASNTAMFALLGTQYGGNGVTTFALPDMRGRVLIDAGQGPGLTQ
                     REQGESAGTEQVTLNNAQLPAHNHTVTPQGSPADATLVSPANGVPATKARTTLYAPGP
                     GTLPMTPTLTSPAGSNAPVPVMQPYVTMRCFIALFGVFPARN"
     gene            complement(1495..>1982)
                     /locus_tag="VF308_11220"
     CDS             complement(1495..>1982)
                     /locus_tag="VF308_11220"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX7437273.1"
                     /translation="GLSFSYAIAGNSIQVSSTFSTTSGSNYLGLDNPDTAFYLGDSFT
                     INFNRTVHAVGLYVIAGNDTQAGDMELSVGGGSVFNSAIADVLVSDGQAFYLGLVESD
                     IGSGFTSATLTGTFTPGAFLAFTVDDVTSAVSAVPEPQTWLLMLAGLGAASALARRRR
                     R"
BASE COUNT          299 a          661 c          730 g          292 t
ORIGIN      
        1 cgcgcctatt tcgagaagcc gcggacgacg gtgggctgga aggggttcat caacgatccg
       61 catctcgacg gcagctttgc catcaacgag ggtctcgagc gcgcgcgccg gctgttgctc
      121 gacctgacga cgctcggcgt gccgaccggc accgaatttc tcgacctgct cagcccccag
      181 ttcatcgccg agctggtcgc ctggggagcg atcggcgcgc gcacgaccga gagccagagc
      241 catcgtcagc tcgcctcggg gctgagttgc ccggtcggct tcaagaacgg caccgacggc
      301 agcactcagg tcgcggccga cgccatcctc gccgcgcgcg cgccgcatgc cttcatgggc
      361 atgacgaaga tgggcgtggc ggcgatcttc gagacacgcg gcaacgacga ttgccacatc
      421 atccttcgcg gcggcaggac acccaactac gacgacgccg gcgtcgcggc gagttgcgcc
      481 gtgcttcgtg ccgccggcct gcgccagcag gtgatggtcg acgtctcgca cggcaacagc
      541 ggcaagcggc acgagcggca gatcgcgatc gcgaccgagc ttgcgcagcg gatcgcggcc
      601 ggcgagcggc gcatcttcgg gctgatgatc gagagccacc tcgcggcggg gcggcaagac
      661 ctggtgcccg gcgtgccgct gaagcacggc gtctcgatca ccgatgcgtg catcggcttc
      721 gaccagaccg tgccggtgtt gcgttcgctc gccgccgccg tcgccgcgcg ccggcgcctg
      781 ggctgagcgg acgcgcgccg cagcccaggc gggcgagggc cggctatcgg ctgtggcgct
      841 acagagctgg gctcagttgc gcgccgggaa cacgccgaag agcgcgatga agcacctcat
      901 ggtcacgtac ggctgcatga caggcaccgg cgcattgctg ccggcgggcg aggtgagcgt
      961 cggcgtcatc ggcagcgtac ccgggccggg cgcgtacaga gtcgtgcgtg ccttggtggc
     1021 cggaacgccg ttcgccggcg acaccagcgt ggcgtcggcg gggctgccct gcggcgtcac
     1081 cgtgtggttg tgcgcgggca actgcgcgtt gttcagcgtc acctgctcgg tgccggccga
     1141 ttcgccctgc tcgcgctggg tgaggccggg gccctggccg gcgtcgatca gcacccggcc
     1201 gcgcatgtcg ggcagtgcga aggtggtcac gccattgccg ccgtactgcg tgcccagcag
     1261 cgcgaacatg gcggtgttcg acgcgatcgg caggagctgc ccgttcagct cggcccagcc
     1321 cctcggcgcg aagttgaagc ccgcgcacat gatctggccg atgaacggat cgctggcttg
     1381 cgccgatgcc gtgccgtgca tggcgccgag cgagagggcc gcgacggcgg cacaggcgag
     1441 gcgagaaagc gagtggctca tggtcttctc ctccgggggt gagaacgaac ggcgtcagcg
     1501 gcgccggcgc cgcgccagcg ccgaggccgc gccgaggccg gccagcatga gcagccaggt
     1561 ctgcggctcc ggcacggcgc tgacggcgct ggtgacgtcg tcgacggtga aggcgaggaa
     1621 cgcgccgggc gtgaacgtgc cggtcagcgt cgccgacgtg aagcccgagc cgatgtcgct
     1681 ctcgaccagg ccgaggtaga aggcctggcc gtcgctgacc agcacgtcgg cgatcgcgct
     1741 gttgaagacg gagccacccc ccaccgacag ctccatgtcg ccggcctgcg tgtcgttgcc
     1801 cgcgatcacg tagaggccca ccgcatgcac ggtgcgattg aagttgatcg tgaagctgtc
     1861 gcccaggtag aacgcggtgt cggggttgtc gagcccgagg tagttgctgc ccgaggtcgt
     1921 gctgaaggtg ctggagacct ggatcgaatt gccggcgatg gcgtagctga agctcaaccc
     1981 gc
//
LOCUS       DASVHM010000600         3041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_404704, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000600 DASVHM010000000
VERSION     DASVHM010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3041
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404704"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..821)
                     /locus_tag="VF308_11225"
     CDS             complement(<1..821)
                     /locus_tag="VF308_11225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX7437274.1"
                     /translation="MNSSGASRARCAPAVAAAALLLSGCMNLIPAYERPAAPIAPGYA
                     PEMTPASAAGGPAAADTPWQSFYVDARLKRLIEIALQNNRDLRIAVLNIEQARATYQV
                     RRADELPSVGAGASVQREPGSTGKLVNTYSVGLALSSYELDFFGRVRSLSQAALAQYL
                     GTAEARKTVQISLISSVANAYLSLLADDELLRVTRQTLATREDSAKLTKLKFDYGAAS
                     ELDSRQAESLLEGARVTLAQSLRQRALDEDALVLLIGQPLPADLPPALALEGQQLL"
     gene            complement(814..>3041)
                     /locus_tag="VF308_11230"
     CDS             complement(814..>3041)
                     /locus_tag="VF308_11230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018059883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7437275.1"
                     /translation="PQGVQWSIPYDSSRFIKISIGRVVETLVEAVILVFLVMYLFLQS
                     LRYTLIPTVVVPVALFGAFGMMFAFGYSINVLTMFAMVLAVGILVDDAIVVIENVERI
                     MSEEGLSPRDATKKAMGQITAALVGISVTLVSVFLPMAFFSGSVGNIYRQFSLVMVSS
                     MLFSVFLALSLTPALCATFLKPVEAGHKQEKGGFFGWFNRGFKAATHGYEGWVAKILK
                     RTGRFLVLFALIVGIAVFMFLRLPNSFLPTEDQGYLIANVQLPPGATQTRTLAVMQQA
                     EGFFLHQPEVAEMVSVLGFSFSGSGQNAALAFVTLKPWDERKGPEHSAQGIAGRAFGA
                     LMGVRDAFIFALVPPAIPELGTATGFSFRLQDRGANGHAALLAARNQMLGMAAQSKVL
                     AGVRPDGLEDAPQLQIDIDRDRASALGVSFDTVNAVLSTALGSAYVNDFPNAGRLQRV
                     VVQADAPDRMQPDDLLQLNVLNNQGKPVLMSAFATTRWITGAIQTIRYNGYPTMRISG
                     DAAPGYSTGDAMNEMERLAAQLPAGFAHEWTGQSREERLSGSTATILLAFSLLAVFLC
                     LSALYESWSIPFAVLLAVPLGVLGAVLGASLRGMPNDVFFKVGMITVIGLSAKNAILI
                     IEFAKDLHAQGKGLVEATLEAVHLRFRPILMTSIAFILGVLPLVVATGAGSASQRAIG
                     TGVMSGMITATLLAIFFVPVFFVVMRRMFKGSDRQRRMYAHELDGGPPKPATAEAAGH
                     E"
BASE COUNT          527 a         1010 c         1061 g          443 t
ORIGIN      
        1 agcaactgct ggccctcgag cgccagcgcc ggcggcaagt cggccggcag gggttgtccg
       61 atcaacagca cgagcgcgtc ttcatcgagc gcgcgctggc gcagcgactg cgccagcgtg
      121 acgcgcgcgc cttcgagcag cgattcggcc tggcgggagt cgagctcgga cgcggcgccg
      181 tagtcgaatt tcagcttcgt gagcttcgcc gagtcttcgc gggtcgcgag ggtctgccgc
      241 gtcacgcgca gcagctcgtc gtcggccagg agactcaggt aggcgttggc gaccgaggag
      301 atcagactga tctgcaccgt cttgcgcgct tcggccgtgc cgaggtattg cgccagcgcg
      361 gcctggctga ggctgcgcac gcggccgaag aaatcgagct cgtagctgct gagcgcgagg
      421 ccgaccgaat aggtgttcac gagcttgccg gtgctgcccg gctcgcgctg caccgacgcg
      481 cccgcgccga ccgatggcaa ctcgtcggcg cggcgcacct ggtaggtcgc ccgcgcctgc
      541 tcgatgttga gcacggcgat gcgcaggtcg cggttgttct gcagggcgat ctcgatcagg
      601 cgcttcaggc gcgcatcgac gtagaagctc tgccacgggg tgtcggcggc ggccgggccg
      661 cccgccgcgc tggcgggcgt catctcgggc gcgtagcccg gcgcgatcgg cgcggcgggc
      721 cgctcgtagg ccgggatcag gttcatgcag cccgacagca gcaaggccgc ggccgccacg
      781 gccggcgcgc agcgggcccg cgaagcgcca ctgctattca tggccagccg cctctgccgt
      841 ggccggtttg ggcggcccac cgtccagttc atgggcgtac atcctgcgct ggcggtcgct
      901 gcccttgaac atgcgccgca tgaccacgaa gaacaccggc acgaagaaga tggcgagcag
      961 cgtcgccgtg atcatcccgc tcatcacgcc ggtgccgatc gcgcgctggc tcgccgagcc
     1021 cgcgcccgtc gccacgacga gcggcagcac gccgaggatg aaggcgatcg aggtcatcag
     1081 gatcggccgg aagcgcaggt gcacggcctc gagcgtcgcc tcgacgaggc ccttgccttg
     1141 ggcatgcagg tccttcgcga actcgatgat caggatcgcg ttcttcgccg acaggccgat
     1201 caccgtgatc atgccgacct tgaagaagac gtcgttcggc atgccgcgca agctcgcgcc
     1261 gagcaccgca ccgagcacgc cgagcggcac cgcgaggagc accgcgaacg ggatcgacca
     1321 gctctcgtag agcgccgaga gacagagaaa gaccgcgagc aacgagaagg cgagcaggat
     1381 cgtggccgtc gatccggaga ggcgctcctc gcgcgactgc ccggtccact cgtgggcgaa
     1441 gcccgccggc agttgcgcgg ccaggcgctc catctcgttc atggcgtcgc cggttgagta
     1501 gccgggcgcc gcgtcgccgg aaatgcgcat cgtcgggtag ccgttgtagc ggatggtctg
     1561 gatcgccccg gtgatccagc gtgtcgtcgc gaatgccgac atcagcaccg gcttgccctg
     1621 gttgttgagc acgttcaact gcagcaggtc gtcgggctgc atgcgatccg gagcgtcggc
     1681 ctgcacgacg acgcgctgca gacggccggc gttcggaaag tcattgacgt aggccgaacc
     1741 gagcgccgtc gagagcacgg cgttgacggt gtcgaaggag acgccgagcg cgctggcgcg
     1801 gtcacggtcg atgtcgatct gcaactgcgg cgcatcttcg aggccgtcgg gccgcacgcc
     1861 ggcaagcacc ttgctctgcg ccgccatgcc gagcatctgg ttcctcgcgg cgagcagcgc
     1921 ggcgtgaccg ttggcgccgc gatcctgcag ccggaacgaa aagccggtcg cggtgccgag
     1981 ctcgggaatg gctggcggca cgagcgcgaa gatgaaggcg tcgcgcaccc ccatcagcgc
     2041 gccgaaggcg cgcccggcaa tcccctgcgc cgagtgctcg ggacccttgc gctcgtccca
     2101 cggcttgagg gtcacgaagg cgagcgcggc attctgcccg ctgcccgaga agctgaagcc
     2161 gagcacgctg accatctcgg cgacctcggg ctggtgcagg aagaagccct cggcctgctg
     2221 catcaccgcg agcgtgcgcg tctgcgtcgc gcccggcggc agctgcacat tggcgatgag
     2281 gtaaccctgg tcctcggtcg gcaggaacga gttcggcagg cgcaggaaca tgaagacagc
     2341 gatgccgacg atcagggcga acagcacgag gaagcggccg gtgcgcttga ggatcttcgc
     2401 gacccagccc tcgtagccgt gcgtcgccgc cttgaagccg cggttgaacc agccgaagaa
     2461 gccgcctttc tcctgcttgt ggccggcctc gacgggcttg aggaaggtgg cgcacagcgc
     2521 cggcgtgagc gagagcgcga ggaacaccga gaacagcatc gagctcacca tcacgagcga
     2581 gaactggcga tagatgttgc cgaccgagcc gctgaaaaaa gccatcggca ggaacaccga
     2641 gaccagcgtg acgctgatgc cgaccagcgc ggcggtgatc tggcccatcg ccttcttggt
     2701 cgcgtcgcgc ggcgaaaggc cctcctcgct catgatgcgt tcgacgttct cgatcacgac
     2761 gatcgcgtcg tcgaccagga tgccgaccgc gagcaccatc gcgaacatcg tcagcacgtt
     2821 gatcgaataa ccgaacgcga acatcatccc gaacgcgccg aacagcgcca ccggcacgac
     2881 gacggtcggg atcagggtgt agcgcaggct ctgcaggaac aggtacatca cgagaaagac
     2941 caggatcacg gcctcgacca gcgtctcgac gacgcggccg atcgagatct tgatgaagcg
     3001 cgagctgtcg tacgggatgc tccactgcac gccctgtgga a
//
LOCUS       DASVHM010000601         2595 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_186295, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000601 DASVHM010000000
VERSION     DASVHM010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186295"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            183..497
                     /gene="rplW"
                     /locus_tag="VF308_11235"
     CDS             183..497
                     /gene="rplW"
                     /locus_tag="VF308_11235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEX7437276.1"
                     /translation="MQRPTHAEGRLSQVLVAPIVSEKATLVSEKQNQVTFKVLRDATK
                     PEIKAAVELMFKVDVESVQTVIQKGKVKKFGRSIGRRDHVKKAYVSLKAGQELNFSGE
                     GA"
     gene            497..1321
                     /gene="rplB"
                     /locus_tag="VF308_11240"
     CDS             497..1321
                     /gene="rplB"
                     /locus_tag="VF308_11240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEX7437277.1"
                     /translation="MPVVKVKPTSPGRRAVVKVVHPHLYKGRPEAALLEPQMQNAGRN
                     NNGHITIRHKGGGHKHHYRVVDFVRNKDAIPAKVERIEYDPNRSAHIALVCYADGERR
                     YVIAPRGLEVGATIISGAEAPIKAGNTLPIRNIPVGSIVHCVEMLPGKGAQIARSAGT
                     AVTLLAREGTYAQMRLRSGEVRKIHIDCRATIGEVSNEEHSLRQYGKAGVKRWMGIRP
                     TVRGVAMNPVDHPHGGGEGRTGEGQAPVSPWNTLTKGYRTRNNKRTQTMIVARRKK"
     gene            1332..1610
                     /gene="rpsS"
                     /locus_tag="VF308_11245"
     CDS             1332..1610
                     /gene="rpsS"
                     /locus_tag="VF308_11245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEX7437278.1"
                     /translation="MTRSLKKGPFVDHHLAVKVEKASATKDKKPIKTWSRRSTILPDF
                     IGVTIAVHNGKQHVPVYVTDQMVGHKLGEFALTRTFKGHPADKKVVKK"
     gene            1622..1951
                     /gene="rplV"
                     /locus_tag="VF308_11250"
     CDS             1622..1951
                     /gene="rplV"
                     /locus_tag="VF308_11250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007866508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEX7437279.1"
                     /translation="METRSIVRGVRLSADKGRLVADLVRGKKVGQAIDILNFTQKKAA
                     GIIKKALESAIANAEHNDGADIDELKITQIYVEQGATLKRFSARAKGRGNRISKPTAH
                     IYITVGN"
     gene            1968..>2595
                     /gene="rpsC"
                     /locus_tag="VF308_11255"
     CDS             1968..>2595
                     /gene="rpsC"
                     /locus_tag="VF308_11255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEX7437280.1"
                     /translation="MGQKIHPTGFRLPVTRNWSSRWYASNKNFATMLAEDLKVREYLK
                     ARLKSAAVSRILIERPAKNARITIYSARPGVVIGKKGEDIENLKAELTRRLGVPVAVN
                     IEEVRKPEIDAQLIADSITQQLEKRIMFRRAMKRAMQNAMRLGAQGIKLMSSGRLNGI
                     EIARCEWYREGRVPLHTLKADIDYGFSEAKTTYGVIGVKCWVYRGDRLA"
BASE COUNT          561 a          840 c          837 g          357 t
ORIGIN      
        1 tacaagaagg tgctcgtcac caagggcgcg atggagcaac tcaaggagat gctggcatga
       61 gcacggcaac gcccaagccg gacgcgccgg ccaagacggc caaggttgcg acgccgaagc
      121 cggcgaagac ggcggccgcg aagcccgcga agagcctgac ctcgaagccc gccaaggcca
      181 cggtgcagcg gcccacgcac gccgagggac gtctctcgca ggtgctcgtc gcgccgatcg
      241 tgagcgagaa ggccacgctg gtctccgaga agcagaacca agtcaccttc aaggtcctgc
      301 gcgacgcgac caagccggag atcaaggcgg cggtcgagct gatgttcaag gtcgacgtcg
      361 agtcggtgca gaccgtgatt cagaagggca aggtcaagaa attcggtcgt tcgatcggcc
      421 gccgcgacca tgtcaagaag gcgtatgtgt cgctcaaggc tggccaggag ctcaacttct
      481 ccggggaggg cgcgtaatgc ccgtcgtcaa agtcaaaccg acttcgcccg gccgccgcgc
      541 ggtcgtgaag gtcgtgcatc cgcatctcta caaagggcgg cccgaggccg cgctgctcga
      601 gccgcagatg cagaacgccg gccgcaacaa caacggccac atcacgatcc gccacaaggg
      661 cggcggtcac aagcaccact atcgcgtcgt cgacttcgtc cgcaacaagg acgcgattcc
      721 ggcgaaggtc gagcgcatcg agtacgaccc gaatcgcagc gcccacatcg ccctggtctg
      781 ctacgccgat ggcgagcgcc gctacgtgat cgcgccgcgc ggcctggaag tcggtgccac
      841 catcatctcc ggcgccgagg cgccgatcaa ggcgggcaac acgctgccga ttcgcaatat
      901 tccggtcggc tcgatcgtcc attgcgtcga gatgctgccc ggcaagggcg cgcagatcgc
      961 acgctcggcc ggaaccgcgg tgacgctgct cgcccgcgaa ggcacctatg cgcagatgcg
     1021 gctgcgctcg ggcgaagtgc gcaagatcca catcgactgc cgcgcaacga tcggcgaggt
     1081 ctcgaacgaa gagcacagcc tgcgccagta cggcaaggcc ggcgtcaagc gctggatggg
     1141 catccgtccg accgtgcgcg gcgtcgcgat gaacccggtc gatcacccgc acggtggcgg
     1201 cgaaggccgc accggcgagg gtcaggcccc ggtctcgcct tggaacaccc tgaccaaggg
     1261 ctaccgcacg cgcaacaaca agcgcacgca gacgatgatc gtcgcgcgcc gcaagaagta
     1321 aggagagtgg catgacccgc tcactcaaga agggcccgtt cgtcgaccac cacctcgcgg
     1381 tcaaggtcga gaaggcgtcg gccacgaaag acaagaagcc gatcaagacc tggtcgcggc
     1441 gctcgacgat cctgcccgat ttcatcggcg tgacgatcgc ggtgcacaac ggcaagcagc
     1501 acgtgccggt ctacgttacc gaccagatgg ttggccacaa gctcggtgaa tttgcgctca
     1561 cgcgcacgtt caagggccac ccggccgaca agaaggtcgt caagaagtaa ggacgttcac
     1621 gatggaaacg cgttcaatcg ttcgcggcgt tcggctttct gccgacaagg gccggctggt
     1681 ggccgacctg gtgcgcggca agaaggtcgg ccaggcgatc gacatcctga acttcaccca
     1741 aaagaaggcc gccggcatca tcaagaaggc gctcgaatcg gcgatcgcca acgccgagca
     1801 caacgacggc gccgacatcg acgagctgaa gatcacgcag atctatgtcg agcagggcgc
     1861 aacgctcaag cgcttctcgg cacgcgccaa gggacgcggc aaccgcatca gcaagccgac
     1921 ggcgcacatc tacatcaccg tcggcaactg aggcgcaaaa ggacaccatg ggacagaaga
     1981 ttcacccgac gggctttcgc ctcccggtca cgcgcaactg gtcgtcgcgc tggtacgcgt
     2041 cgaacaagaa cttcgcgacg atgctcgccg aggacctgaa ggtccgcgag tacctgaagg
     2101 cgcgcctgaa aagcgcggcg gtgtcgcgca tcctgatcga gcgccccgcc aagaacgcac
     2161 gcatcaccat ctattcggca cgacccggcg tcgtgatcgg caagaagggc gaggacatcg
     2221 agaacctcaa ggccgagctg acgcgccgtc tcggcgtgcc ggttgccgtg aacatcgagg
     2281 aagtgcgcaa gcccgagatc gacgcccagc tgatcgccga ttcgatcacc cagcagctcg
     2341 aaaagcggat catgttccgt cgcgccatga agcgcgcgat gcagaacgcc atgcgcctgg
     2401 gtgcgcaagg catcaagctg atgtcgtcgg ggcgcctgaa cggcatcgag atcgcgcgtt
     2461 gcgagtggta ccgcgaaggt cgcgtgccgc ttcacacgct gaaggccgac atcgactatg
     2521 gcttttcgga agcgaagacg acctacggcg tgatcggcgt gaagtgctgg gtctatcgtg
     2581 gtgaccggct cgcca
//
LOCUS       DASVHM010000602         1575 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1053717, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000602 DASVHM010000000
VERSION     DASVHM010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1053717"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..1095)
                     /locus_tag="VF308_11260"
     CDS             complement(109..1095)
                     /locus_tag="VF308_11260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009518058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7437281.1"
                     /translation="MSRRAVIQATAALAGAIACARRVSAQEAYPDPGRSIRIVVPFSP
                     ATGIDILARTLGQKLAEKWKIGVVIDNRVGASGNIGTEAAAKAPADGYTLLMTANTIV
                     LNRSLFKNIPYDPIRDFAPVAPLAIASMALVTHPSIKARTAGEFIALAKANPGKINYG
                     SPGNGTPHHLAMELFKHETGIDMTHVPYRGTGPAVTDLLGGQIGAMFLPIHVALPHLQ
                     AGKLNILAAGSLQRTPVTPDIPSLAEATGVKNIDVDIWYAVYAPAATPADVVSRLNAE
                     MNALLRQADVRDTLGKQGLVATGGTPEQLAQMTRGDMERWAKVVRAAKIEAN"
     gene            complement(1120..>1575)
                     /locus_tag="VF308_11265"
     CDS             complement(1120..>1575)
                     /locus_tag="VF308_11265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018904219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX7437282.1"
                     /translation="FDWLDVPVLIRAADSVLEFPMIDQDPLPWWTRGRVTLLGDAAHP
                     MVPRGSNGAGQAILDARCLTDLLAGNADPAAALRAYEAQRLEATTQVVLTNRSNPPDA
                     IIREVHLRSGDKPFERIEDIISQDELAAMSERYKRVAGFDRSSLARPAP"
BASE COUNT          214 a          504 c          566 g          291 t
ORIGIN      
        1 cgtcgtagaa gtgccgccgt tcgtcgcgga cggtgatttt gggcggggca tccgaggccg
       61 tcttcgcagg ggcttgcgca agcgtgtcca taccatctcc ttcggccgtc agttggcctc
      121 gatcttcgcc gcccggacga ctttcgccca gcgctccatg tcgccgcgcg tcatctgcgc
      181 gagctgttcg ggcgtgccgc cggtggcgac gaggccctgt ttgccgagcg tgtcacgcac
      241 gtccgcctgg cgcagcagcg cgttcatctc ggcattcaat cggctgacga catcggccgg
      301 cgttgcggcc ggcgcgtaga ccgcgtacca gatgtcgacg tcgatgttct tcacgccggt
      361 cgcttcggcg agcgacggga tgtcgggcgt gaccggcgtg cgctgcaggc tgccggccgc
      421 gaggatgttg agcttgccgg cctgcaggtg cggcagcgcg acgtggatcg gcaggaacat
      481 cgcaccgatc tggccgccga gcaggtcggt gaccgccggg ccggtgccgc gatagggtac
      541 gtgcgtcatg tcgatcccgg tctcgtgctt gaagagttcc atcgccaggt gatggggcgt
      601 gccattgccg ggcgagccat agttgatctt gccggggttc gccttcgcca acgcgatgaa
      661 ttcgccggca gtcctggcct tgatcgacgg gtgcgtgacc agcgccatgc tcgcgatcgc
      721 gagcggcgcg accggcgcga aatccctgat ggggtcgtac gggatgttct tgaagaggct
      781 gcggttcaac acgatcgtgt tcgccgtcat cagcagcgtg tagccgtcgg ccggtgcctt
      841 cgcggccgct tcggtgccga tgttgccgct cgcgccgacg cggttgtcga tcacgacccc
      901 gatcttccat ttctcggcga gcttctggcc gagcgtgcgc gcgaggatgt cgatgccggt
      961 ggccggagag aagggcacga cgatgcggat cgagcggccc ggatccggat acgcttcttg
     1021 cgctgacacc cggcgtgcgc aggcgatggc gccggccagc gccgcggtcg cctggatgac
     1081 ggctcgccgt gacatcgaca tggtggttcg ttccttgcct cagggagcgg gtcgggcgag
     1141 cgaggaccga tcgaatccgg cgacgcgctt gtagcgctcc gacatggcgg cgagttcgtc
     1201 ctgactgatg atgtcctcga tccgttcgaa cggcttgtcg ccgctgcgca gatgcacttc
     1261 acggatgatc gcatcgggcg ggttgctgcg gttcgtcagc accacctgcg tcgtcgcctc
     1321 gaggcgctgc gcttcgtagg cgcgcagcgc ggcggcgggg tcggcattgc cggcgagcag
     1381 gtcggtcagg cagcgcgcgt cgaggatcgc ctggccggcg ccgttcgagc ctcgcggcac
     1441 catcggatgt gcggcgtcac cgagcagggt cacgcggccc cgggtccacc acggcaacgg
     1501 gtcctggtcg atcatcggaa actcgagcac cgaatcggcc gcgcggatta gtaccggcac
     1561 gtccagccag tcgaa
//
LOCUS       DASVHM010000603         2312 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1269824, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000603 DASVHM010000000
VERSION     DASVHM010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2312
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1269824"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..958
                     /locus_tag="VF308_11270"
     CDS             <1..958
                     /locus_tag="VF308_11270"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008906353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEX7437283.1"
                     /translation="IYLYYKSGGSFDILVWHRLPLTMQAQVLIFFAFFFAFAVKVPMW
                     PVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHKWAWFIVALSLI
                     AVVYIGLVALVQHDMKKLVAYSSIAHMGFVTLGFFIFDAQGRGNELAVSGAIVQMVSH
                     GFVSGAMFLCIGVLYDRVHSREISAYGGVANTMPKFASFALLFAMANCGLPGTAGFVG
                     EWMVILGTVKVNFWIAAAAATTLIWGAGYTLWMVKRVYFGAVANEHVRDLVDLDRREF
                     AMLAALAIAVLAMGLYPKPFTDVMHTSVVELLRHTSIPKLAH"
     gene            972..>2312
                     /gene="nuoN"
                     /locus_tag="VF308_11275"
     CDS             972..>2312
                     /gene="nuoN"
                     /locus_tag="VF308_11275"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015013281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HEX7437284.1"
                     /translation="MNWQAVYPVLPEIALLVMACVVALSDLWLPGKDRIVTYCLAQAS
                     LGVIALGQLWFFYEGATYYAMQRMVVADPMGHLLGLFATLAMMTTLVYTRPYAASRDI
                     LKGELFTLSMFSLLGILVMLAANNFLVVYLGLELMSLSLYALVAMRRDDTGATEAAMK
                     YFVLGALASGFLLYGLSMMYGATGSLDISEVFKAIGTGRINRAVLVLGTVFVVSGLAF
                     KLGAVPFHMWVPDVYQGAPTSMTLLVGGAPKLAAFAITLRLLVEGMIGLAIDWQQMLV
                     LLSLASMLLGNLAAIAQTNLKRMLAYSTIAQIGFMLLGLCPGVVSGNTVSAGNAYSSA
                     MFYVVTDVLTTLGTFGMIMLLSRAGHEAERIDDFRGLARRSPWFAGVMAVFMFSLAGI
                     PPTVGFYAKLAVLQALVSTNVPAMIWLAVAAVVLSLLGAYYYLRVVKVMWFDEPV"
BASE COUNT          308 a          818 c          715 g          471 t
ORIGIN      
        1 gatctacctc tactacaagt cgggcgggag cttcgacatc ctcgtgtggc atcgcctgcc
       61 gctgacgatg caggcgcagg tgctgatctt cttcgccttc ttcttcgcct tcgctgtcaa
      121 ggtgccgatg tggccggtcc acacctggct gcccgatgcg cacgtcgagg cgccgacggg
      181 aggctcggtc gtgctggcgg cgatcatgct caagctcggc gcctacgggt tcctccgctt
      241 ctcgctgccg atcacgcccg acgccagcca caagtgggcc tggttcatcg tcgcgctgtc
      301 gctgatcgcc gtcgtctaca tcggcctggt cgcgctcgtc cagcacgaca tgaagaagct
      361 cgtcgcctat tcgtcgatcg cccacatggg cttcgtcacg ctcggcttct tcatcttcga
      421 cgcccagggg cgcggcaacg agctcgccgt ctcgggggcg atcgtccaga tggtctcgca
      481 cggcttcgtc tcgggcgcga tgttcctctg catcggcgtc ctctacgacc gcgtccactc
      541 gcgcgagatc tcggcctacg gcggcgtcgc caacacgatg ccgaagttcg cctccttcgc
      601 cctgctgttc gcgatggcca attgcggcct gccaggaacg gccggcttcg tcggcgagtg
      661 gatggtgatc ctcggcacgg tgaaagtgaa cttctggatc gccgccgcgg cagcgacgac
      721 gctgatctgg ggcgccggat acacgctctg gatggtcaag cgcgtctact tcggcgcggt
      781 cgccaacgag cacgtacgcg atctcgtcga tctcgaccgg cgcgagttcg cgatgctcgc
      841 tgcgctcgcg atcgcggtgc tggcgatggg cctgtatccc aagcccttca ccgacgtcat
      901 gcacacctcg gtggtcgagt tgctgcgcca cacctcgatt cccaagctgg cccattgagg
      961 cgacgccgac catgaactgg caagccgtct atcccgtcct tccggagatc gccctcctgg
     1021 tgatggcgtg cgtcgtcgct ctcagcgacc tgtggctgcc gggcaaggac cgcatcgtca
     1081 cctactgcct cgcccaggcc tcgctcggcg tgatcgccct cggccagctc tggttcttct
     1141 acgagggcgc gacctactac gcgatgcagc ggatggtcgt cgccgatccg atgggccacc
     1201 tgctcggcct gttcgcgacg ctggcgatga tgacgacgct cgtctacacg cgcccctacg
     1261 ccgcctcgcg cgacattctg aagggagagc tcttcacgct ctcgatgttc tcgctgctcg
     1321 gcatcctggt gatgctcgcg gccaacaact tcctggtcgt ctacctcggc ctcgagctga
     1381 tgtcgctctc gctctacgcg ctcgtcgcca tgcgccgcga cgacaccggt gcgaccgagg
     1441 cggcgatgaa gtacttcgtc ctcggcgcgc tggcgagcgg cttcctcctc tacggcctgt
     1501 cgatgatgta cggcgccacc ggctcgctcg atatcagcga ggtgttcaag gcgatcggca
     1561 ccgggcgcat caaccgtgcc gtcctcgtcc tcggcaccgt ctttgtcgtc tcgggcctgg
     1621 ccttcaagct cggcgcggtt ccgttccaca tgtgggttcc cgacgtctac cagggcgcgc
     1681 cgacgtcgat gacgctgctc gtcggcggcg cccccaagct cgccgccttc gcgatcacgc
     1741 tgcgcctgct cgtcgagggg atgatcggcc tggcgatcga ctggcagcag atgctggtgc
     1801 tgctctcgct cgcgtcgatg ctgctcggca acctggcggc gatcgcgcag accaacctga
     1861 agcgaatgct cgcgtattcg acgatcgccc agatcggctt catgctgctc ggcctgtgcc
     1921 cgggcgtcgt cagcggcaac acggtctccg cgggcaacgc ctacagctcg gcgatgttct
     1981 acgtcgtcac cgacgtgctc accacgctcg gcaccttcgg catgatcatg ctgctctcgc
     2041 gcgccggcca cgaggccgag cggatcgacg atttccgcgg cctggcgcgg aggagcccct
     2101 ggttcgccgg cgtcatggcg gtcttcatgt tttcgctcgc cggcatcccg ccgacggtcg
     2161 gcttctacgc caagctcgcc gtgctgcagg cgctggtctc gaccaacgtg ccggcgatga
     2221 tctggctcgc cgtagccgcc gtcgtcctct cgctgctcgg cgcctactac tacctgcgcg
     2281 tcgtcaaggt gatgtggttc gacgagccgg tc
//
LOCUS       DASVHM010000604         3258 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_42326, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000604 DASVHM010000000
VERSION     DASVHM010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3258
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42326"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1307)
                     /locus_tag="VF308_11280"
     CDS             complement(<1..1307)
                     /locus_tag="VF308_11280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019425336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEX7437285.1"
                     /translation="MTLPLQLPWHARARHGLRLLALPVLLLAGCATSHGPPSALQPSS
                     TPPPTISAAPAAPVVEAAPASMGAAAEPADDAQNVAAPVAIDPLRPEVRLDLDDRAAR
                     TDLWTRVRAGFTMPDLDSDLVRERERWYAARPDYVQRMTERGGRYLFHIVEELDRRGM
                     PTELALLPFIESAYNPQAMSTAKASGMWQFIPSTGRDFLLKQNLFRDDRRDVLASTRA
                     ALDYLQRLHAMFGDWHLALAAYNWGEGSVQRAIARNQKVGLPTDYMSLKMPAETQLYV
                     PKLQAVKNIIARPQDFGLTLPALSNHPYFLSVAIERDIDVGLAVQLAGMSLDEFQTLN
                     PQMNKPVILAAATQQILLPYDNANRFVRQLPQHRGPLATWTAWVAPKTMRTAEAARVI
                     GMNEAQLREINRIPSRMLVKVGSTLVVPRTQARLADVSLHVAD"
     gene            1392..2225
                     /locus_tag="VF308_11285"
     CDS             1392..2225
                     /locus_tag="VF308_11285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX7437286.1"
                     /translation="MTQGSAIIGLAQWLQAPAGRYLLEWEQRHLDQAVADLFGFHALQ
                     LGLVELEALRANRMPHRWVATEEARPPDAGDDRALPKVGVALCCNFDALPFESLSLDL
                     VVLPHALELARDPHLALREVERVLVPEGRVVILGFNPASLWGLRQRLGRLRRLFWWQR
                     EQSLYLPSDGELIGYRRLRDWLRLLSFEVEAGRFGCYLPPVRSEKWLARLGWMERTGD
                     RWWPVFGAVYFIVAVKRVRGMRLVGLIRDQRPVPNATPAPASVSRHQNESEPIMEKHP
                     Q"
     gene            2222..2674
                     /locus_tag="VF308_11290"
     CDS             2222..2674
                     /locus_tag="VF308_11290"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease H"
                     /protein_id="HEX7437287.1"
                     /translation="MKWTAYTDGACAPSNPGPAGWGAVLIAPDGTTETDYFGFIGHGT
                     NQIAELTAALEGLSRVPAGADVELVSDSQYVLKGLMEWRIGWERRGFRNAKGDPVANL
                     ALWKKLFAVADARRVSTRWVRGHNGDPHNERADALANKALALRAGSEV"
     gene            complement(2808..>3258)
                     /locus_tag="VF308_11295"
     CDS             complement(2808..>3258)
                     /locus_tag="VF308_11295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437288.1"
                     /translation="PQAPAASLTAAVMPEAPPVMRVSRNVLDPSRAREALAPMLTLDG
                     LLGCAVVDGSTGLVLARELREDQPVDIELAAAACAQVLRTHRQAARNMGLSESIEEII
                     TTAGARHQLMRTLPRHSDLFLVALLDKHRTNLALARFQLIEVERSLS"
BASE COUNT          489 a         1027 c         1217 g          525 t
ORIGIN      
        1 ttgtcggcga cgtgcagcga cacgtcggcc aggcgcgcct gggtccgcgg cacgaccagg
       61 gtcgagccga ccttgacgag catgcgcgac ggaatccggt tgatctcgcg caactgcgct
      121 tcgttcatgc cgatcacccg ggcggcctcg gcggtgcgca tggtcttggg tgcgacccag
      181 gcggtccagg tcgcgagcgg cccgcggtgc tgcggcaact ggcgcacgaa gcggttcgcg
      241 ttgtcgtagg gcagcaggat ctgctgcgtc gcggcggcca ggatcacggg cttgttcatc
      301 tgcgggttga gggtctggaa ctcgtcgagg ctcatgcccg cgagctgcac ggcgagcccg
      361 acgtcgatgt cgcgctcgat cgccacgctc aggaagtagg ggtggttcga caacgcgggc
      421 agggtcagac cgaaatcctg cggtcgcgcg atgatgttct tcaccgcctg cagcttgggc
      481 acgtagagct gggtttcggc cggcatcttc agactcatgt agtcggtggg caggcccacc
      541 ttctggttgc gcgcgatcgc ccgctgcacg ctgccttcgc cccagttgta ggcagccagg
      601 gcgaggtgcc agtcgccgaa catggcgtgc agccgctgca ggtagtcgag cgcggcccgg
      661 gtcgatgcca ggacgtcgcg gcggtcgtcg cgaaacaggt tctgcttgag caggaagtcg
      721 cgcccggtcg agggaatgaa ctgccacatg ccggaggcct tcgccgtcga catcgcttgc
      781 gggttgtagg cgctttcgat gaacggcagg agcgcgagct cggtcggcat gccgcgccgg
      841 tcgagctcct cgacgatgtg gaagaggtag cggccgccgc gctcggtcat gcgctgcacg
      901 tagtcgggcc gcgcggcgta ccagcgttcg cgctcgcgca ccagatccga atcgaggtcg
      961 ggcatcgtga agccggcgcg cacgcgggtc cacagatcgg tgcgggcggc gcgatcgtcg
     1021 aggtcgaggc gtacctcggg acgcagcggg tcgatggcaa ccggggcggc gacgttctgc
     1081 gcgtcgtcgg cgggctcggc cgcggcgccc atcgaggcgg gcgcagcctc gacgacgggg
     1141 gccgcaggtg cagccgaaat ggtggggggt ggcgtggagg agggttgcag ggccgaaggc
     1201 gggccgtggg aggtggcgca gccggcaagc agcaagaccg gaagggccag gaggcgaagg
     1261 ccgtggcggg cgcgggcgtg ccacgggagt tgaagaggca aagtcatcgg agtcggtgtc
     1321 tccggttcac tagaatcgtc gcgagcgacg gctcggacgt agtcttaaag gcggggagag
     1381 cggtcgggtt catgacgcaa ggcagcgcga ttataggttt ggcccaatgg ctgcaagctc
     1441 ccgccggtcg ctacctgctc gaatgggaac agcgccatct ggatcaggcc gtcgccgacc
     1501 tgttcggatt tcacgcgttg cagctcgggc tcgtcgaact cgaggccctg cgcgccaatc
     1561 gcatgccgca ccggtgggtg gcgacggaag aggctcgacc gcccgatgcc ggcgacgatc
     1621 gggctctgcc gaaggtgggc gtcgccctgt gctgcaattt cgatgcgctg ccgttcgaga
     1681 gtctcagcct cgatctcgtc gtgctgccgc acgcgcttga gctcgcgcgc gatccgcacc
     1741 tcgcgctgcg cgaggtcgaa cgcgtgctcg tgcccgaagg gcgcgtcgtg atcctcggct
     1801 tcaacccggc gagcctgtgg ggtctgcgcc agcgtctcgg gcgcctgcgg cgcctgttct
     1861 ggtggcaacg cgagcagagt ctctacctgc cgagcgacgg cgagttgatc ggctaccggc
     1921 gcttgcgcga ctggttgcgc ttgctcagct tcgaggtcga ggccggtcgc ttcggctgct
     1981 acctgccacc cgttcggtcg gaaaaatggc ttgcgcgcct cggctggatg gagcgtaccg
     2041 gcgaccgctg gtggccggtt ttcggcgcgg tttatttcat cgtcgcggtc aagcgtgtgc
     2101 gcggcatgcg gctggtcggc ttgattcgcg accagcgacc ggtgccgaat gcgacgccgg
     2161 ccccggccag cgtctcgcgg catcagaacg aatcggaacc gatcatggag aagcatccgc
     2221 aatgaaatgg accgcctaca ccgatggcgc ctgcgcccct tcgaacccgg ggccggccgg
     2281 ctggggcgcc gtgctgatcg ctcccgacgg cacgaccgaa acggactact tcggcttcat
     2341 cggccacggc acgaatcaga tcgccgagct gacggcggcg ctcgaagggc tctcgcgcgt
     2401 gcctgccggc gctgatgtcg aactcgtctc ggacagtcaa tacgtgctga agggactgat
     2461 ggaatggcgc atcggctggg agcgcagggg ttttcgaaat gccaagggcg atccggtggc
     2521 gaacctggcg ctctggaaga agctcttcgc cgtggccgac gcgcgccgcg tctcgacgcg
     2581 gtgggtgcgc ggccacaacg gcgacccgca caacgagcgg gccgatgccc tggccaacaa
     2641 ggcgcttgca ctgcgggccg gcagcgaagt ttgactgcac ttgcgcaggc cgccacggct
     2701 tgccgcagcc cgccggggct cggcccggcg ggttctctcg aggaacgccg acctcaaagc
     2761 cggctctcgc gagcagcggg actcttgcag agcgccgcgg cagccgctca ggacaggctg
     2821 cgctcgacct cgatcagctg gaagcgagcg agcgccagat tcgtgcggtg tttgtcgagc
     2881 agcgcgacga gaaagaggtc agagtgccgc ggcagcgtgc gcatcagctg gtgacgcgcg
     2941 ccggccgtgg tgatgatctc ctcgatggat tccgacaggc ccatgttgcg tgcggcctgg
     3001 cgatgcgtgc gcagcacctg ggcgcaggcg gcggcggcca gttcgatgtc gaccggctga
     3061 tcctcgcgca gctcgcgcgc gaggacgagg ccggtgctgc cgtcgaccac cgcgcagccg
     3121 agcaggccgt ccagcgtcag catcggggcg agcgcctcgc gtgcgcgcga cgggtcgagc
     3181 acgttgcggc tgacccgcat gaccggcggc gcctcgggca tgactgctgc cgtcaaggac
     3241 gctgcgggtg cctgggga
//
LOCUS       DASVHM010000605         3279 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_766100, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000605 DASVHM010000000
VERSION     DASVHM010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3279
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_766100"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..697)
                     /locus_tag="VF308_11300"
     CDS             complement(<1..697)
                     /locus_tag="VF308_11300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020749934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HEX7437289.1"
                     /translation="MTANPSPDDAAPAPAPVSAGEALAYWLKLGFVSFGGPAGQIALM
                     HEDLVVRRRWISESRFLHALNYCMLLPGPEAQQLATYIGWLMHRTWGGIVAGALFVLP
                     SLLILIALSWVYMAFGSVPAVAGVFYGIKPAVTAIVMSAAVRIGRRTLGNAWLWGIAV
                     AAFVAIFAFNLPFPMIVLAAGIVGYVGGRVAPDRFAARSAHGPAAHGGLPALIDDATP
                     TPPHALFTWPRLAR"
     gene            complement(694..1638)
                     /locus_tag="VF308_11305"
     CDS             complement(694..1638)
                     /locus_tag="VF308_11305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromate resistance protein ChrB
                     domain-containing protein"
                     /protein_id="HEX7437290.1"
                     /translation="MTDWLVLAAALPTAPSGLRVRIWRALRATGCATLRDGVYILPAQ
                     AATAADLRTIHQAIRDGGADAHLLELQARDAAQEKAFRRLFDRSEQYADFARSLKDAR
                     ATVKTSAEPALRKLLRSLDQQLTALRSIDFFPGKAQGGASRGFDTLRVEIGRRLSPGE
                     PGRSAAELKRLPKDAFHGKTWATRKRPWVDRLATAWLVRRCLDAKARFLWLDDPKKCP
                     KSAIGFDFDGARFTHVGDRVTFEVVAHSFGLDDDPAIQRLGELVHFIDVGGIPVDPAA
                     GVETVLRGLQARHADDDALLAAACDVFDALHAALRLAE"
     gene            complement(1765..2301)
                     /locus_tag="VF308_11310"
     CDS             complement(1765..2301)
                     /locus_tag="VF308_11310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009520352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HEX7437291.1"
                     /translation="MITVEQIVNTQKTNVETLFGLTGKAFEGFEKLIELNISAAKTAM
                     TEAAATTRAALSAKDAQELVALQTSLLQPAAEKAAAYSRYVYEIAASTGAEVTRVAEA
                     QSAEAQAKFMAIVDTAVKNAPAGTENGVALIKSAVAAANNAIETAQKAAKQAAEVAEA
                     NFNAMSSTAVRVTKGKKA"
BASE COUNT          524 a         1053 c         1169 g          533 t
ORIGIN      
        1 cgcgcgccag tcgcggccac gtgaagagtg cgtgcggcgg cgtcggcgtg gcgtcgtcga
       61 tgagcgccgg cagcccgccg tgggccgcag ggccgtgggc cgagcgcgcg gcgaacctgt
      121 cgggggcgac ccgcccgccg acgtagccga cgatgcccgc cgccagcacg atcatcggga
      181 acggcagatt gaacgcgaag atggcgacga aggcggcgac cgcgattccc cagagccatg
      241 cgttgccgag cgtgcggcgg ccgatccgga ccgccgccga catcacgatc gccgtgacgg
      301 ccggcttgat gccgtagaag acgccggcca cggccggcac gctgccaaag gccatgtaga
      361 cccacgacaa ggcgatcagg atcagcagcg atggcaggac gaacagcgcg ccggcgacga
      421 tgccgcccca cgtgcggtgc atgagccagc cgatgtaggt ggccagctgc tgcgcctcgg
      481 gacccggcag cagcatgcag tagttgagcg cgtgcaggaa ccggctttcc gagatccagc
      541 gccggcgcac gacgaggtcc tcgtgcatga gggcgatctg cccggccggg ccgccgaagc
      601 tgacgaagcc gagcttgagc cagtaggcga gcgcctcgcc ggcgctgacc ggcgccggcg
      661 ccggcgccgc atcgtcgggc gaggggttcg cagtcattcg gccagccgaa gcgccgcatg
      721 gagcgcgtcg aagacatcgc aagccgcggc gaggagcgcg tcgtcgtcgg cgtgccgcgc
      781 ctgcaggccg cgcagcaccg tctcgacgcc ggccgcgggg tcgaccggga tgccgccgac
      841 gtcgatgaag tggaccagct cgccgaggcg ctggatggcg gggtcgtcgt cgaggccgaa
      901 gctgtgcgcc acgacctcga aggtcacgcg gtcgccgacg tgggtgaagc gcgcgccgtc
      961 gaagtcgaag ccgatggcgc tcttcgggca cttcttcgga tcgtcgagcc agaggaaccg
     1021 cgccttggcg tcgaggcagc ggcgcacgag ccacgccgtc gcgagccggt cgacccaggg
     1081 gcgcttgcgc gtcgcccagg tcttgccgtg gaacgcgtct ttcggcaggc gcttcagctc
     1141 ggcggcgctc cggccgggct ctccggggga gagcctgcgg ccgatctcga cgcgcaaggt
     1201 gtcgaagccc cggctggccc ctccctgcgc cttgccggga aagaaatcga tcgagcggag
     1261 cgccgtcagt tgctggtcga gcgagcgcag cagcttgcgc agcgctggct cggcgctcgt
     1321 cttcacggtg gcgcgggcgt ccttcagcga gcgcgcgaag tccgcgtact gctcgctccg
     1381 gtcgaacagc cggcgaaacg ccttctcctg cgcggcgtcg cgtgcctgca gctcgagcag
     1441 gtgcgcgtcg gcgccgccgt cccggatcgc ctggtggatc gttcgcaggt ccgccgccgt
     1501 ggcggcctgc gccggcagga tgtagacgcc gtcgcgcaag gtcgcgcagc cggtggcgcg
     1561 gagcgcgcgc cagatccgca cccgcagccc gctcggcgcg gtcggcaacg cggcggcgag
     1621 gacgagccag tcggtcatgc agcaactatc tcacattgtg atgaatgcta cgagtcgtcc
     1681 ttcgggaagc aaaaaaaaag cccagatcgc tccgggcttt tgggtgcggc gccgctcgcg
     1741 cggcgctgcg tctggctgga aagctcaggc cttcttgccc ttcgtcacgc ggacggcggt
     1801 cgaggacatc gcgttgaagt tcgcttcggc gacttcagcg gcttgcttgg cggccttctg
     1861 cgccgtctcg atggcgttgt tcgccgcggc aaccgccgac ttgatgaggg cgacgccgtt
     1921 ctcggtgccg gccggcgcgt tcttgacggc cgtgtcgacg atcgccatga acttggcttg
     1981 ggcttcggcg gattgcgctt cggcgactcg cgtcacttcg gcgccagtcg aggcggcgat
     2041 ctcgtacacg tagcggctgt aggcggcggc cttctcggcg gcgggctgga gcaggctcgt
     2101 ctgcagggcg accagctctt gcgcgtcctt ggcggacagc gcggccctgg tcgtcgccgc
     2161 agcttcggtc atcgcggtct tggcggccga gatgttgagc tcgatcagct tctcgaagcc
     2221 ttcgaacgcc ttgccggtca ggccgaacag ggtttcgacg ttggtctttt gggtgttgac
     2281 gatttgttca acggtgatca tgaggggtct ccttgacggt gtagggcggg ctagtcttta
     2341 cgcgccttat gctgcagtgc aacatggact gagtgtagag gcgcagggac ggaatgcaag
     2401 cgcattctgt tgcgctgcag caaacctagt gcgacgcccc taagtacggg ttcgccgtgg
     2461 cgagcgtcgg ctcacccgcc ggcggctgga acgagggaac agcgctcttg gcgccaagct
     2521 cgtcctcttt gtaggcaacg ttcctctcgg tgacttccaa tacgccgaaa ttcgggagtt
     2581 cgcacgccgt gcgcttgctg cactggccga accagctgag gaagctccag tgatggccgg
     2641 cgtgcagggg cgtctcttta agctcgaaaa cttgtaaacc ttatcgcagt tgcggcgtcc
     2701 tgggaggaat ctcacgtcag cccacggaga cgagcaattg cgatggccgc acaatcgcgc
     2761 gtatgccaaa catcgcatca ctccttaaag ccgaaatctc gcgaattgca cgcaaggagc
     2821 tcagagtcga gacgcttgcc cttaagaagt ccgtagtagc ccaacgaacg gaaattgcgg
     2881 ctttgaagcg ccgtacgctg tctctcgagc agactcttcg gcggcaaagt cggggacagc
     2941 cgcagacttc ctccgtcgcc accgatgaca cggttccggc aggcagtcgg ttcagcgcca
     3001 agggcttgcg atcacaacga cgccgccttg ggatttcggc tgaggagtgt ggtcgcctag
     3061 taggagcctc cgggcagtcc gtctacaact gggagcaggg gaaggcgcga ccccagacga
     3121 agcatctggc agcgatcgcg ggcctgaaga ccttggggaa gaagggagcg gcggcggtga
     3181 tcgcttcccg gaaggcttcg agctaggcgc tgagccgcag cgccggattg gggccgccgc
     3241 cccagtcttc gagccacagc tcggggcgtt cgacgcgga
//
LOCUS       DASVHM010000606         3024 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_693376, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000606 DASVHM010000000
VERSION     DASVHM010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3024
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_693376"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..208)
                     /locus_tag="VF308_11315"
     CDS             complement(<1..208)
                     /locus_tag="VF308_11315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018905876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline hydroxylase"
                     /protein_id="HEX7437292.1"
                     /translation="MKLTATQHEQFDRDGYLFFAGLFGTDETRTLIDAVPQLYSRRAD
                     YNVREKGKDAVRTNFAAHLVSEPFA"
     gene            complement(276..1271)
                     /locus_tag="VF308_11320"
     CDS             complement(276..1271)
                     /locus_tag="VF308_11320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEX7437293.1"
                     /translation="MQAILAVTVPFFALVLLGYLAAQREVLPESAIPGLNAYVLFFAL
                     PCMLFRFGSSLPFARLIDPRLILIYTASALLMVAITILVTLRRPAATTGVDLKDAAFG
                     ALVAAFPNAGFMGVPLLVALLGDPAAGPVIGAILVDLILTSTLCLALAQASTHRSGGA
                     DERSMLAAAALSLRGALTNPLPWAIVIGAVFAALDRELPGPLAQIVRMLGDSATPVAL
                     FTIGTVLSRAGRHAHSRTQARHYLPVALLKLLLHPALVFGLGTAATLLGAPVSKFGLM
                     VLTLVAALPSASNVSVLAEIYGADNGRITRIIMASTVLAFASFSVLAWAFGIGTT"
     gene            1402..>3024
                     /gene="sppA"
                     /locus_tag="VF308_11325"
     CDS             1402..>3024
                     /gene="sppA"
                     /locus_tag="VF308_11325"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020654675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEX7437294.1"
                     /translation="MSNFRFASTRKWFGKFWWLLDSSRRVTFNLLFLAIVLILIVAWI
                     KSGPPALGAKTALVFDLHGSIAEQKAGSLGQSALDQLRGNSAQKIQLRDVRTVLDAAA
                     ADPKIERLVLILDELDGAGMATLHEVAAAIDRFKASGKQVVAWGSSYDQRQYYLAARA
                     DQVLLHPLGLVYLEGFGRYRNYYRDALDRLGITVNLIRVGTYKSFAEPYIANGPSPAA
                     READSALYGSLWASYTEGVEKARKLPAGGIMRSIDDLPQRVAAVSGDGAKLALSEKLV
                     DALKTRDELRQMLIERGAKDEDGKTFRQISFEDYLTRQRPKSTGDAVAVVVAEGEIVD
                     GQAPAGTVGGLSTAALVKKAREDEHVKAVVLRVNSPGGSAFGSELVRRELELTRAAGK
                     PVVVSMGDVAASGGYWISTSADEVIADPSTITGSIGVFGLLPSVDKALDKIGVHTEGV
                     TTTWLGGAGDPRRPLDPRFAALVQAAIDHVYADFTAKVAQARKTTPEKIDAVAQGRVW
                     SGAQAKERGLVDRLGSYGDALDAAAARAKLDKG"
BASE COUNT          500 a         1001 c         1098 g          425 t
ORIGIN      
        1 tggcgaacgg ctcgctgacc aggtgggcgg cgaaattggt ccgcaccgcg tccttgccct
       61 tttcgcgcac gttgtagtcg gcgcgccggc tgtagagctg cggcaccgcg tcgatcaggg
      121 tgcgcgtttc gtccgtgccg aagagtcccg caaagaacag gtagccgtcg cggtcgaact
      181 gttcgtgctg ggttgcggtc agcttcatga ggtgcctttc gacgagggct ccagtatgtc
      241 cgagagtggc cggcaggtcg cgccggggcg ccgcgtcagg tcgtgccgat cccgaaggcc
      301 catgccagga ccgagaagct cgcgaacgcg agcaccgtcg aggccatgat gatgcgggtg
      361 atgcggccgt tgtcggcgcc gtagatctcg gccagcaccg agacgttgct cgcgctcggc
      421 agcgcggcga ccagcgtcag gaccatcagg ccgaacttcg aaaccggtgc gccgagcagg
      481 gtcgcggccg tgcccaggcc gaagaccaag gccgggtgca gcagcagctt gagcagcgcc
      541 accggcaggt agtgccgcgc ctgggtgcgc gagtgcgcgt ggcggccggc gcgcgacagc
      601 accgtgccga tcgtgaagag cgcgaccggc gtggccgaat cgccgagcat ccgcacgatc
      661 tgggcgagcg gccccggcag ttcgcggtcc agcgcggcga agacggcgcc gatgacgatg
      721 gcccacggca gcgggttggt cagggcgccg cgcagcgaga gcgcggcggc ggccagcatc
      781 gagcgctcgt cggcgccgcc cgagcggtgc gtgctggctt gggcgagggc gaggcagagc
      841 gtgctggtca ggatcagatc gaccaggatc gcaccgatca ccgggcccgc ggcagggtcg
      901 ccgagcaggg cgacgagcag gggcacgccc atgaagccgg cgttcggaaa cgcggcgacg
      961 agggcgccga aggcggcgtc cttcaggtcg acgccggtcg tcgcggcggg ccggcgcagc
     1021 gttacgagga tcgtgatcgc gaccatcagc aaggccgagg cggtgtagat gaggatcagc
     1081 ctcgggtcga tcaggcgcgc gaacggcagg ctcgagccga agcggaacaa catgcacggc
     1141 agcgcaaaga agagcacgta ggcattgagc ccgggaatcg ccgattccgg cagcacctcg
     1201 cgttgggcgg cgagatagcc cagcaggacg agcgcgaaga agggcaccgt gacggcgagg
     1261 atcgcttgca tcggggcgca gtatcgcaag ccggcgcgtc ccgggcggcc gcagccaagc
     1321 acaaaatgct gccctgggaa tccgcagggt tctagcggca ttgccttaag ctcccgctcg
     1381 tcgccatttt ccggagctcc catgtccaac tttcgcttcg catcgacgcg caagtggttc
     1441 ggcaagttct ggtggctgct ggactcgagc cggcgcgtca ccttcaacct gctgtttctc
     1501 gcgatcgtgc tgatcctgat cgtcgcctgg atcaagagcg gaccgccggc gctcggcgcg
     1561 aagacggcgc tggtgttcga cctgcacggt tcgatcgccg aacagaaggc cggcagcctg
     1621 ggccagtcgg cgctcgacca gctgcgcggc aattcggcgc agaagatcca gctgcgcgac
     1681 gtgcgcaccg tcctcgatgc ggccgccgcc gatccgaaga tcgagcgcct cgtgctgatc
     1741 ctcgacgagc tcgatggcgc gggcatggcg acgctgcacg aggtcgccgc cgcgatcgat
     1801 cgcttcaagg cgagcggcaa gcaggtcgtc gcctggggtt cgagctacga ccagcgccag
     1861 tactacctcg ccgcgcgcgc cgaccaggtg ctgctgcatc cgctcggcct ggtctatctc
     1921 gaaggcttcg ggcgctaccg caactactac cgcgacgccc tcgatcgcct cggcatcacc
     1981 gtcaacctga tccgcgtcgg cacttacaag agctttgccg aaccctacat cgccaacggg
     2041 ccgtcgccgg cggcgcgcga ggccgacagc gccctttacg ggtcgctctg ggcgagctac
     2101 accgagggtg tcgagaaggc gcgcaagctc ccggccggcg gcatcatgcg gtccatcgac
     2161 gacctgccgc agcgcgtggc cgcggtgtcg ggcgacggcg ccaagctggc gctttccgaa
     2221 aagctcgtcg acgctttgaa gacccgcgac gagttgcgcc agatgctgat cgagcgcggc
     2281 gccaaggatg aagacggcaa gaccttccgc cagatctcgt tcgaggatta cctcacgcgc
     2341 cagcggccga agagcaccgg cgacgcggtc gccgtggtcg tggccgaggg cgagatcgtc
     2401 gacggccagg caccggccgg aacggtcggc gggctttcca cggccgcgct ggtcaagaag
     2461 gcacgcgagg acgagcacgt caaggcggtg gtgctgcgcg tcaactcgcc cggcggcagc
     2521 gcgttcggct cggagctggt gcgacgcgag ctcgagctca cgcgcgccgc gggcaagccg
     2581 gtggtggtgt cgatgggcga cgtcgcggct tcgggcggct actggatctc gacctcggcc
     2641 gacgaggtca tcgccgatcc gtcgaccatc accgggtcga tcggcgtgtt cgggttgctg
     2701 ccgagcgtcg acaaggcgct cgacaagatc ggcgtgcaca cggaaggcgt cacgacgacc
     2761 tggctcggcg gcgccggcga cccgcgacgt ccgctcgacc cgcgcttcgc cgccctcgtg
     2821 caggctgcca tcgaccacgt ctacgccgac ttcacggcca aggtggcgca ggcgcgcaag
     2881 accacgcccg agaagatcga tgcggttgca cagggccggg tctggagcgg cgcgcaggcc
     2941 aaagaacgtg gcctcgtcga ccgcctcggc agctacggcg atgcgctcga cgcggcggcg
     3001 gcgcgcgcca agctcgacaa gggc
//
LOCUS       DASVHM010000607         7118 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1126818, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000607 DASVHM010000000
VERSION     DASVHM010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7118
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1126818"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..416
                     /locus_tag="VF308_11330"
     CDS             <1..416
                     /locus_tag="VF308_11330"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEX7437295.1"
                     /translation="QTGQRYVFDMGSGQYKREIARARTFGFTKDVEMMRSRGLALGGS
                     MDNAVVVDDYKVLNDEGLRYDDEFVKHKILDAIGDMQVIGHPLLAAYSAFKSGHALNN
                     RLLRKVLADKSAYEIVTFEDASQAPAGLAELAPAW"
     gene            429..614
                     /locus_tag="VF308_11335"
     CDS             429..614
                     /locus_tag="VF308_11335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437296.1"
                     /translation="MLFFRALVVLMLGAGVACFAIYAVTGSMRYRSLGIRIVKWTVLA
                     GLVFFGVLILERVAPFL"
     gene            625..834
                     /locus_tag="VF308_11340"
     CDS             625..834
                     /locus_tag="VF308_11340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437297.1"
                     /translation="MTAFRWIVGVIAVLMAIGAVGSFLLFVASDIGLWIERARRFRHW
                     TWLALLLWFNVEVWGRVAYTLVHWI"
     gene            complement(852..1442)
                     /locus_tag="VF308_11345"
     CDS             complement(852..1442)
                     /locus_tag="VF308_11345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005800313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqiA/YcfP family alpha/beta fold hydrolase"
                     /protein_id="HEX7437298.1"
                     /translation="MTSPVTHLLYLHGFRSSPQSAKARQVAAWVALHRPDLIWRCPQL
                     PPSPRVAFDGVFDTIRHWPHERMAVIGSSLGGFYATALAERTGCRAVLLNPAVDPARD
                     LAAQIGETTAWHSEERFFFSPEFIDELRALTVPALTLPERYFAIIAKGDEVLSWQEMY
                     ERYRFATVKLLEGGDHALSDFDAHLPDVARFLGLAR"
     gene            complement(1453..2823)
                     /gene="mpl"
                     /locus_tag="VF308_11350"
     CDS             complement(1453..2823)
                     /gene="mpl"
                     /locus_tag="VF308_11350"
                     /EC_number="6.3.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HEX7437299.1"
                     /translation="MHLHILGICGTFMGGLAALARESGHTVTGCDANVYPPMSEQLRA
                     LGIELIEGYGADQLALAPDLFVVGNAIVRGNPLMEAILDAGLPYTSGPQWLADHVLSG
                     RHVLAVAGTHGKTTTTAMLAWILDSAGLAPGFLVGGVPGNFGVSARLGRVGHRSPFVI
                     EADEYDTAFFDKRSKFVHYRPRTLVLNNLEYDHADIFENLAAIERQFHHLVRTVPSQG
                     RLVVNSREESLQRVLAMGCWSTLQRFGAKKEEPGALRARGEPHAFDVLRGSLKIARVD
                     WSLLGEHNQLNALAAIGAAEHVGVAPEAAAKALGTFANVRRRLELRGSVNRIAVYDDF
                     AHHPTAMRTTINGLRRKVGRERILAVFEPRSNTMKLGVVKAQLPWSLEEADLAFCHSG
                     GLGWDAAAALKPLGAQAIVCATIDQLVAQVAAAARPGDHILCMSNGGFGDVHAKLLDA
                     LGAPSR"
     gene            complement(2885..4198)
                     /gene="hemL"
                     /locus_tag="VF308_11355"
     CDS             complement(2885..4198)
                     /gene="hemL"
                     /locus_tag="VF308_11355"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009517774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEX7437300.1"
                     /translation="MSTDPQGAPAGRNAQLFARAQRVIPGGVNSPVRAFRAVGGTPRF
                     IERGAGAYMFDAEGRRYIDYIGSWGPMILGHGHPSVLEAVHKAVADGLSFGAPTEREI
                     ELAETIIGLVPSVEQVRLVSSGTEAAMSALRLARGATGRSRIIKFEGCYHGHADALLV
                     KAGSGLATFGHPTSAGVPPEVVQHTVVLAYNDLEQLEAAFALHRDTIACVLIEPIAGN
                     MNFVRAEVAFMKRLRELCTEHGALLVFDEVMTGFRVALGGAQSVYAKAIPGFEPDISV
                     FGKVIGGGMPLAAFGAKRAVMELLAPLGAVYQAGTLSGNPVATACGLATLREIAKPGF
                     FAALADRTATLVEGIVGAARASGVAMAGDSEGGMFGFFFAAALPRNYADVMATDKERF
                     NRFFHAMLERGIYFAPALYEAGFVSSAHSAADIEATVDAVRAALR"
     gene            complement(4188..5117)
                     /locus_tag="VF308_11360"
     CDS             complement(4188..5117)
                     /locus_tag="VF308_11360"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEX7437301.1"
                     /translation="MTAETSSTEADTTAPQEQPAPACVMTFNASDPSGAGGIAGDVAT
                     IAAMGAHALPVVTSIVMRDTAEVFDHHAIDADVIAEQARSVLEDVTIAAWKVGFLGST
                     EGVSTVAEILSDYPDVPLVAYLPNLSWVEEDEQSAYLDAFRELVLPQTEVLVGNHQTL
                     CDFLIPDWEGERPASPRELAVAANKHGARYVLVTSVPLPDQFLDNVLASPQGPITGEK
                     FERFEVSFVGAGDTLAAALAALLATGVDLHTAVGEALAFLDQALDAGFRPGMGNVIPD
                     RFFWALPAGDEGEDEGAAAAEDTSAAKSPRHVH"
     gene            5300..5452
                     /locus_tag="VF308_11365"
     CDS             5300..5452
                     /locus_tag="VF308_11365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007838397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HEX7437302.1"
                     /translation="MCLICGWIYDEASGDPDHGIAAGTAWEAVPMNWTCPECGARKED
                     FEMVQI"
     gene            5507..5905
                     /locus_tag="VF308_11370"
     CDS             5507..5905
                     /locus_tag="VF308_11370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7437303.1"
                     /translation="MSNPAAADSVGLKVLVIDDSNTIRRSAEIFLKQGGYEVLLAEDG
                     FDALSKVNDHGPDLIFCDILMPRLDGYQTCAIIKRNAKFASVPIIMLSSKDGLFDKAR
                     GRMVGSEDYLTKPFTKDQLLQAVNQHRRAA"
     gene            5980..6345
                     /locus_tag="VF308_11375"
     CDS             5980..6345
                     /locus_tag="VF308_11375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7437304.1"
                     /translation="MPVQKILLVDDSKTELHYLSELLEKRGYSVRMAHNGEEAMRRLA
                     EETPDLILMDVVMPGLNGFQLTRAITRDPRFVNVPVIMCTSKNQETDKVWGMRQGARD
                     YIVKPVDPTELMAKIQAFG"
     gene            6393..6923
                     /locus_tag="VF308_11380"
     CDS             6393..6923
                     /locus_tag="VF308_11380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HEX7437305.1"
                     /translation="MANKQALRDLQSRLAERLKAARTQERGRSWLAVECAARGFLFPL
                     RDAGEIFALAPMAPVPHSQRWFLGVSNLRGHLHGVVDLAVFLGLKTGESPREQARLVG
                     FNQALDINCVLLVDRLSGLRSEADLKPESDDGGPRPGFVGARFRDASSRLWQELNLAA
                     LAGDEAFLGIVGTQSA"
BASE COUNT         1146 a         2329 c         2504 g         1139 t
ORIGIN      
        1 gccagaccgg ccagcgctat gtgttcgaca tgggctcggg ccagtacaag cgcgagatcg
       61 cccgcgcgcg caccttcggt ttcacgaagg acgtggagat gatgcgctcg cgcggcctag
      121 cgctcggcgg cagcatggac aatgcggtcg tcgtcgacga ctacaaggtg ctcaatgacg
      181 aggggctgcg ctacgacgac gagttcgtca agcacaagat cctcgacgcg atcggcgaca
      241 tgcaggtgat cggccacccg ctgctcgccg cctacagcgc cttcaagtcg ggccacgccc
      301 tcaacaaccg cctgctgcgc aaggtgctgg ccgacaagag cgcctacgag atcgtgacct
      361 tcgaggacgc atctcaggcg cccgcaggcc tggccgaact ggcgccggcc tggtgagcgc
      421 gaagcccgat gctgtttttc agggcgctcg tagtgctaat gctgggcgcg ggcgtcgcct
      481 gcttcgcgat ctatgccgtg accggcagca tgcgctaccg cagcttgggc atccgcatcg
      541 tcaagtggac ggtcctcgcc gggctggtgt tcttcggcgt gctgatcctc gagcgggttg
      601 caccgttcct gtagcggccc ccgcatgacg gcctttcgct ggatcgtcgg ggtcatcgcc
      661 gtgctcatgg cgatcggcgc ggtcggctcg ttcctgctct tcgttgcctc cgacatcggg
      721 ctctggatcg aacgggcgcg gcgctttcgc cactggacct ggctcgcgct gctgctctgg
      781 ttcaacgtcg aggtctgggg ccgggtggcc tacacgctcg tccactggat ttgaggcatg
      841 cgccgaagcg gtcagcgcgc gagcccgagg aagcgcgcga cgtcgggcag gtgcgcgtcg
      901 aaatcgctca gcgcatggtc gccgccctcg agcagcttga cggtcgcgaa gcgatagcgc
      961 tcgtacatct cttgccatga caggacttca tcgcccttcg cgatgatcgc gaaatagcgt
     1021 tcgggaagcg tcagggccgg caccgtcagc gcccgcaact cgtcgatgaa ttcggggctg
     1081 aagaagaacc gttcttcgct gtgccaggcg gtggtttcgc caatctgcgc cgcgaggtcg
     1141 cgggccggat cgacggcggg gttgagcagc accgcgcggc agccggtgcg ctcggccagc
     1201 gccgtcgcat agaagccgcc cagcgaactg ccgatgacgg ccatgcgctc gtgcggccag
     1261 tgcctgatgg tgtcgaaaac gccgtcgaac gcgacgcgcg gcgagggcgg caactgcggg
     1321 caccgccata tgaggtcggg ccggtgcagc gcgacccagg ccgcgacctg gcgcgctttc
     1381 gccgactgcg gtgacgaccg gaagccgtgc aggtagagca ggtgggtgac gggcgacgtc
     1441 atcgccccgc gctcaccggg agggcgcgcc cagcgcatcc agcagctttg cgtggacgtc
     1501 gccgaagccg ccgttgctca tgcacaggat gtggtcgccc ggccgcgccg cggcggcgac
     1561 ctgggcgacg agctggtcga tggtggcgca gacgatggct tgcgcgccca gcggtttgag
     1621 cgccgcggcg gcgtcccagc ccagtccgcc gctgtggcag aacgcgaggt cggcctcttc
     1681 gagcgaccac ggcaattgcg ccttgacgac gccgagcttc atcgtattcg aacgcggttc
     1741 gaagaccgcg aggatgcgtt cgcgcccgac cttgcggcgc aggccgttga tcgtcgtgcg
     1801 catcgcggtc ggatggtgcg cgaagtcgtc gtagaccgcg atccggttga cgctgccgcg
     1861 cagttcgagc cggcgccgca cgttggcgaa ggtgccgagc gccttggcgg ccgcttcggg
     1921 cgccacgccg acgtgctccg cggcgccgat cgcagccagc gcgttcagct gattgtgttc
     1981 gccgagcagc gaccagtcga cccgcgcgat cttgaggctg ccgcgcagca cgtcgaaggc
     2041 atgcggctcg ccgcgcgcgc gcagggcgcc cggctcttcc ttcttcgcgc cgaagcgctg
     2101 caacgtgctc cagcaaccca tcgcgaggac gcgctgcagg ctttcttcgc ggctgttgac
     2161 gaccaggcgg ccctgcgagg gcacggtgcg cacgaggtga tggaactggc gctcgatcgc
     2221 cgccaggttc tcgaagatgt cggcgtggtc gtactcgagg ttgttcagga ccagtgtgcg
     2281 cggccggtag tgcacgaact tgctgcgctt gtcgaagaag gccgtgtcgt actcgtcggc
     2341 ctcgatcacg aacggggatc tgtgcccgac ccgcccgagc cgcgccgaga cgccgaagtt
     2401 gcccggcacg ccgccgacca gaaagcccgg cgcgagtccc gccgaatcga ggatccaggc
     2461 gagcatcgcg gtggtcgtgg tcttgccatg ggtgccggcg acggcgagca cgtggcgccc
     2521 ggacagcacg tggtcagcga gccattgcgg cccgctcgtg tagggcaacc ccgcgtcgag
     2581 gatcgcttcc atcagcgggt tgccgcgcac gatcgcattg ccgaccacga agaggtccgg
     2641 cgcgagggcc agctggtcgg cgccatagcc ttcgatcagc tcgatgccga gggcgcgcaa
     2701 ttgctcgctc atcggcgggt agacgttggc atcgcagccg gtcacggtgt ggccgctctc
     2761 gcgcgccagc gcggccaggc cgcccatgaa ggtgccacag atgcccagga tgtggaggtg
     2821 catggagacg ttcggagggc gcggggcgcc gcgtgccggg gggctggtgg cgggtgactt
     2881 cgaatcagcg cagcgctgcg cgtaccgcgt cgaccgtggc ctcgatgtcg gcggccgaat
     2941 gtgccgagct aacgaagccg gcttcgtaga gggccggagc gaagtagatg ccgcgctcga
     3001 gcatcgcatg gaagaagcgg ttgaagcgct ccttgtcggt ggccatcacg tcggcgtagt
     3061 tgcggggcag cgcggcggcg aagaagaagc cgaacatgcc gccttcgctg tcgcccgcca
     3121 tcgcgacgcc gctcgcgcgc gccgcgccga cgatgccttc gaccagcgtg gcggtacggt
     3181 cggcgagggc cgcgaagaat ccgggcttcg cgatttcgcg cagcgtcgcc aggccgcagg
     3241 cggtcgcgac cgggttgccc gagagcgtgc cggcctggta gaccgcgccg agcggggcga
     3301 gcagctccat caccgcgcgc ttggcgccga aagccgcgag cggcatgccg ccgccgatga
     3361 ctttgccgaa gacgctgatg tcgggctcga agccgggaat ggccttcgcg tagacgctct
     3421 gcgcgccgcc gagagcgacg cgaaagccgg tcatcacctc gtcgaacacg agcagcgcgc
     3481 catgctcggt gcagagttcg cgcagccgct tcatgaacgc gacttcggcg cgcacgaagt
     3541 tcatgttgcc ggcgatcggc tcgatcagca cgcaggcaat cgtgtcgcgg tgcagggcga
     3601 aagccgcctc gagctgctcg aggtcgttgt aggcgagcac cacggtgtgc tggaccactt
     3661 cgggcggcac gcccgcgctg gtcggatgcc cgaaggtcgc gaggccggag ccggccttga
     3721 cgagcaaggc atcagcgtgg ccgtgatagc agccttcgaa tttgatgatc ctgctgcgcc
     3781 ccgtcgcgcc ccgtgccagg cgcagcgcgc tcatcgcggc ctcggtgccg gaactgacaa
     3841 ggcgcacctg ctccacgctc gggacaaggc cgatgatggt ttcggcgagc tcgatctcgc
     3901 gctcggtcgg cgcgccgaag gaaaggccgt cggccaccgc cttgtggacc gcctcgagca
     3961 ccgaggggtg gccatggccg aggatcatcg gcccccagga gccgatgtag tcgatgtagc
     4021 gccggccttc cgcatcgaac atgtaggcgc cggcgccgcg ttcaataaag cgcggcgttc
     4081 cgcccaccgc gcggaacgcg cgcacgggcg aattcacgcc gcccgggatg acccgctggg
     4141 cgcgcgcgaa gagttgcgcg ttgcggccgg cgggagcgcc ttgcggatca gtggacatgg
     4201 cgcgggcttt tcgcggcgct cgtgtcctcg gcggccgctg cgccttcgtc ctcgccctcg
     4261 tcgccggccg gcagggccca aaagaagcgg tccggaatca cgttgcccat gcccggccgg
     4321 aagcccgcgt cgagcgcctg gtcgaggaag gccagagcct cgccgaccgc ggtgtgcagg
     4381 tcgacgccgg tcgcgagcaa cgcggcgagc gcggcggcga gcgtgtcgcc agcgccgacg
     4441 aaactgactt cgaagcgctc gaacttctcg ccggtgatcg gaccttgcgg cgaggcgagc
     4501 acgttgtcga ggaactggtc gggcagcggc acgctcgtga cgagcacgta gcgcgcgccg
     4561 tgcttgttcg ccgcgaccgc gagttcgcgc ggcgacgccg ggcgctcgcc ttcccaatcc
     4621 gggatcagga aatcgcacag ggtctgatgg ttgccgacga gcacctcggt ctgcggcagc
     4681 accagttcgc gaaaggcgtc gagataggcc gattgctcgt cttcctcgac ccaggaaagg
     4741 ttcggcaggt aggccacgag cggcacgtcg ggatagtcgg agagaatctc ggcgaccgtg
     4801 ctgacgccct ctgtcgaacc gagaaagccg accttccagg ccgcgatcgt cacgtcctcg
     4861 agcacgctgc gggcctgctc ggcgatcacg tcggcatcga tcgcgtgatg atcgaagact
     4921 tcggccgtgt cgcgcatcac gatgctggtc acgaccggca aggcgtgcgc gcccatcgcc
     4981 gcgatcgtcg ccacgtcgcc ggcgatgccg cccgctccgc tcgggtcgct cgcgttgaag
     5041 gtcatcacgc acgcgggcgc cggctgctcc tgcggggcgg tcgtgtcggc ttcggtggaa
     5101 gaggtttcgg cggtcatcga aagtgcatgc tggcgacccg gtggcaggct tgcaaggcct
     5161 cggtcgtacc tctagacaaa cgtgaagaat gttgcgtatg tacctacgaa gccttgcgtt
     5221 ttcgaatagg cccgtggcta caatctgacc gcattgtagt gaaggcgacg agcgacccgt
     5281 gagcgaggcg aagacctgga tgtgcctgat ctgcggctgg atttacgacg aggcctccgg
     5341 cgatccggac cacggcatcg ctgccggcac ggcttgggag gccgtaccga tgaactggac
     5401 ctgtcctgaa tgcggcgctc gcaaggaaga cttcgagatg gtgcagatct gacagcatga
     5461 agcgggccca cccagcacgc gggtcgagtc ttgaggagaa cgcctggtga gcaatccggc
     5521 cgctgccgat tccgtgggtc tgaaggtgct ggtcatcgac gacagcaaca ccatccgccg
     5581 cagtgcggag atcttcctca agcagggtgg ctacgaggtc ctgctcgccg aagacggctt
     5641 cgacgcgctg tcgaaggtca acgaccacgg ccccgatctg atcttctgcg acatcctgat
     5701 gccacgcctc gacggctacc aaacctgcgc gatcatcaag cgcaacgcca agttcgcgag
     5761 cgtgccgatc atcatgctgt cgtccaagga tggcctcttc gacaaggccc ggggtcgcat
     5821 ggtcggctcg gaggactacc tgaccaagcc gttcaccaag gatcaactcc tgcaggcggt
     5881 gaaccagcat cgccgcgccg cctgatgcgc acccccgcga cgcgtcggcg cacggccggt
     5941 ggcggcgcgc cggccgttca tgtcgactga ggatccagca tgcctgtcca gaagatattg
     6001 ttggtggacg actcgaagac cgagttgcac tacctttccg agctgctcga aaagcgcggc
     6061 tattcggtgc gcatggcgca caacggcgaa gaggcgatgc gccggctcgc cgaggaaacg
     6121 cccgacctga tcctgatgga tgtggtgatg cccgggctca acggcttcca gctgacgcgg
     6181 gcaatcaccc gcgatccgcg cttcgtgaac gtgccggtga tcatgtgcac gagcaagaac
     6241 caggaaaccg acaaggtctg gggtatgcgc cagggcgccc gcgactacat cgtcaagccg
     6301 gtcgacccga ccgagctgat ggccaagatc caggccttcg gctgacgcga gcgcgaagac
     6361 acgcgacctg gcagccagac ggacggatgt gaatggccaa caagcaagcc ctgcgcgacc
     6421 ttcagagccg cctcgccgaa cggctgaagg cggcgcgcac ccaggagcgc ggcaggtcgt
     6481 ggctggccgt cgagtgcgcc gcgcgcggtt ttctctttcc gctgcgcgat gccggtgaga
     6541 tcttcgcgct cgccccgatg gccccggtgc cgcacagcca gcgctggttt ctcggtgtct
     6601 cgaacctgcg cgggcacctc catggcgtgg tcgaccttgc tgtctttctc gggctcaaga
     6661 ccggtgagag tccgcgcgaa caagcgcgcc tcgtcggctt caaccaggcg ctcgacatca
     6721 actgcgtgct gctggtcgac cggctttccg gcttgcgcag cgaggcggat ttgaagcccg
     6781 aatccgacga cggcgggccc cggccggggt tcgtcggagc gcgttttcgc gatgcgtctt
     6841 cgcgcctctg gcaggagttg aacctggccg cgctggccgg cgacgaggcg tttctgggca
     6901 tcgtcggcac gcagtccgcg tgagcggctc gccgggccga actgaacgag agcgaacgag
     6961 aaacatatga gcttcctgaa caagttgcag ggttggggtc gcaaggaggg cgccgcggcg
     7021 cccgccgatg cgctcccgca ggacatggca ttcgagggtg ccctggcact accgggcggt
     7081 ggcgcgatcg cgggagggcc cgagagggcc gcgcccga
//
LOCUS       DASVHM010000608         2897 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_911444, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000608 DASVHM010000000
VERSION     DASVHM010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2897
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_911444"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VF308_11385"
     CDS             <1..205
                     /locus_tag="VF308_11385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437306.1"
                     /translation="IVDFDGTTRTHDAVETALQARFAPTLLFLGPGGDELSERLVGAG
                     IPDFYGALLEQRLERARAALHPR"
     gene            450..1577
                     /locus_tag="VF308_11390"
     CDS             450..1577
                     /locus_tag="VF308_11390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437307.1"
                     /translation="MSEGKSASRNGSADAQHHDDERWHQLVSEIGVEIAAPLTAALER
                     INALIATGRIDRAGLRALRDEVEQARQIGMIGQQLTRFASGRVRQSHERLQLADVLKN
                     VLAHRARETQARGITLKPSLKPADVIVDASLLFSLLNTTIDWALANAHSFIEFTIDFK
                     TWPIHARIICRFAHRPADEPGDGSGQDVLPRLNSLAWRLLEQTAWTMGLVIERKDEGG
                     NTTLVLEFPRTVNEAVQAVTATELDDEGTSTNSKALAGSHVLVIASRREMRVEIRDAL
                     RNMNLLVDFVGSVKEAAGFCKEGLPHAIIIESIQLGERFNAFRDEILAEVPDFVFIEI
                     IEEGSTFEMSGLNGATVARVGRAVIGSSLPAALMFELSKGL"
     gene            1688..2197
                     /locus_tag="VF308_11395"
     CDS             1688..2197
                     /locus_tag="VF308_11395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEX7437308.1"
                     /translation="MKPARPVAALIVAAALAVGGYLVLRGFDGAEVAPNVEYTLLDGS
                     KATTDQLRGKVVLINFWATSCAICMHEMPEIVLTHEKFKGRGYDTLAVAMSFDSPADV
                     MNFAATRKLPFGVAIDDTGAIAERFGNVRITPTSVLVDRHGQIVKRFVGEPDFVALHK
                     LVDKLLAET"
     gene            complement(2224..>2897)
                     /locus_tag="VF308_11400"
     CDS             complement(2224..>2897)
                     /locus_tag="VF308_11400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7437309.1"
                     /translation="WRVPPATLALGIYGLFGFHFLLFIALRHAPAVEANLVNYLWPLF
                     IVVLAPLILRGARWRRVHVTAALIGFAGAALAIAGGRDLGGGLAWGYVAALGSALIWS
                     SYSLLTRRVAHFPTAAIGLFGLVSGVLALGCHWLLEPAASLSLRDWALIGLTGLGPLG
                     AAFFFWDAALKRGDPSTIGILSYLTPLASTLLLVLTTHRPLTGWIAAAAVLIVGAAVV
                     GMRAR"
BASE COUNT          528 a         1014 c          938 g          417 t
ORIGIN      
        1 gatcgtcgac ttcgacggca cgacgcggac ccacgacgcc gtcgaaaccg cccttcaggc
       61 gcgcttcgcg ccgaccctgc tcttcctcgg cccgggcggc gacgaattga gcgaacgcct
      121 ggtcggagcc ggcatcccgg acttctacgg cgcgttgctg gagcagcggc tcgagcgggc
      181 gcgcgccgcc ttgcacccgc gctgacacga aggtgtcaca aatcgtgact ttttctccgt
      241 ggcgcgcgcc cttgcggccc gcaccactgg cgccgcccgc ggctgggaac gacactcgcc
      301 cctctgccta gcaccttggg cggggctcgg tgtgtgacgc ccggccacgc cgcttcgaac
      361 ccgacggcac tttccggacc gcacggcgtg ggcggaattt ctacaccgtg gtccgccccg
      421 agtgacggca aacaagaaga tcggcacaaa tgtctgaagg aaagtccgcc tcgcgcaacg
      481 gatcggccga cgcccagcac cacgacgacg aacgctggca tcagctggtt tccgaaatcg
      541 gggtggaaat cgcggcaccg ttgacggccg cgctcgagcg catcaacgcc ctcatcgcga
      601 ccggccgcat cgatcgcgcc gggttgcgcg cgctgcgcga cgaggtcgag caggcgcgcc
      661 agatcggcat gatcggccag cagttgacgc gcttcgcgtc gggacgggta cgccagtcgc
      721 acgagcgtct gcagcttgcc gacgtcctca agaacgtgct cgcccaccgc gcccgcgaaa
      781 cgcaggcgcg cggcatcacg ctcaagccgt cgctcaagcc ggccgacgtg atcgtcgatg
      841 cctcgctcct gttcagcctg ctcaacacga cgatcgactg ggccctggcg aacgcccatt
      901 ccttcatcga attcacgatc gacttcaaaa cgtggccgat tcacgcccgg atcatttgcc
      961 ggttcgcgca tcgtccggcc gacgagccgg gcgacggctc gggccaggac gtgctgccgc
     1021 gcctcaattc actggcctgg cgactgctcg agcagaccgc gtggaccatg ggcctcgtga
     1081 tcgaacgcaa ggacgaaggc ggtaacacga cgctggtgct cgagttcccg cgcaccgtca
     1141 acgaggcagt gcaggccgtc accgcgaccg aactcgacga cgagggcacc tcgacgaatt
     1201 cgaaagccct cgccggcagc cacgtcctcg tgatcgcatc gcgccgcgaa atgcgtgtcg
     1261 agatccgcga cgcgttgcgc aacatgaatc tgctcgtcga tttcgtcggc tcggtgaagg
     1321 aagcggccgg gttctgcaag gaaggcctgc cgcacgcgat catcatcgag tcgatccagc
     1381 tgggcgagcg cttcaacgcc ttccgcgacg agatcctggc cgaagtgccg gacttcgtgt
     1441 tcatcgagat catcgaggaa ggcagcacct tcgaaatgtc gggcctcaac ggcgcgacgg
     1501 tcgcgcgagt cggccgggcg gtgatcggaa gctccctgcc cgcggcgctg atgttcgagc
     1561 tgtcgaaggg cttgtagcgc ccaacggagc gcgccgcaca ccgtcagaca gagggcgacc
     1621 accgccttcg cccgtcacgg acatcagagt cgacgtaaac tttcgacgct gcatgaaaga
     1681 cggtcccatg aaacctgccc gccctgtcgc cgccctgatt gtcgccgccg ccctcgcggt
     1741 cggcggatac ctggtcttgc ggggtttcga cggcgccgaa gtggcgccga acgtcgagta
     1801 caccctcctc gacggctcca aggcgacgac ggaccagttg cgcggcaagg tggtgctgat
     1861 caacttctgg gcgaccagct gcgcgatatg catgcacgag atgccggaga tcgtcctcac
     1921 ccacgagaag ttcaaggggc gcggctacga caccctggcc gtggcgatga gctttgactc
     1981 gccggccgac gtgatgaact tcgccgcgac ccgcaagctg ccgttcggcg tcgcgatcga
     2041 cgacaccggt gccattgccg agcgcttcgg caacgtccgg atcaccccca ccagcgtgct
     2101 cgtcgacagg cacggccaga ttgtcaagcg cttcgtcggc gaacccgatt tcgtcgcgct
     2161 gcacaagctg gtcgacaagc tcctcgccga gacctgaccc ggccacgcgg ctgaaagcgc
     2221 gcctcagcgc gcgcgcatgc cgacgacggc cgcgcccacg atcaagaccg ccgctgccgc
     2281 gatccatccg gtcagcgggc gatgtgtcgt cagcaccagc aacagcgtcg acgcgagcgg
     2341 tgtcaggtag ctcaggatgc cgatcgtgct cgggtcgccg cgcttgagcg ccgcatccca
     2401 gaaaaagaat gccgcgccga gcggcccgag gccggtgagc ccgatcagcg cccagtcgcg
     2461 caggctcagg ctcgccgccg gttcgagcag ccagtggcag cccagcgcga gcacccccga
     2521 aaccagcccg aaaaggccga tcgctgcagt cggaaagtgc gcgactcgcc tggtcagcag
     2581 cgagtagctc gaccagatca acgccgaccc cagcgccgcc acgtagcccc atgcgaggcc
     2641 gccgccaagg tcgcgtccgc cggcgattgc cagggccgcc ccggcgaagc cgatcagggc
     2701 cgcggtcaca tggacgcggc gccagcgcgc gccgcgcagg atcagcggcg cgagcacgac
     2761 gatgaaaagc ggccacaggt agttgacgag gttggcctcc accgcaggcg catgacgcag
     2821 ggcgatgaag agcaggaaat ggaagccgaa aagcccgtag atgccgagcg cgagcgtggc
     2881 cggtggaacg cgccatt
//
LOCUS       DASVHM010000609         1651 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_983573, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000609 DASVHM010000000
VERSION     DASVHM010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_983573"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1128
                     /locus_tag="VF308_11405"
     CDS             <1..1128
                     /locus_tag="VF308_11405"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437310.1"
                     /translation="VFLGCGWIGAASVPINTASMGPQIEYFLADSGARLLVIEAGLVD
                     RLGRVEIGRTALQAIWIIGDAAPVALAQQVACTPFPTQAESTAPADVQPGETLAILYT
                     SGTTGPAKGVTCPHAQFEAWGANTARILGITGEDMLGTTLPLFHINALNTFAQAALTG
                     SQVDFAARFSASGFWAAMRAAHATVVYLLGAMVPMLLAQPAGEAERSHRIRLGLGPGV
                     PAAAGRAFRERTGIALLEGYGSTETNFVIASTAETPCDGRMGWLQPGFDARVVDAQDE
                     ELPAGAAGELVLRADAPFAFASGYFNRPEDTVRAWRNLWFHTGDRVVREADGAFRFID
                     RIKDAIRRRGENISSYEVEQVLLGHPAVAAAAVYPVGSELA"
     gene            1138..1371
                     /locus_tag="VF308_11410"
     CDS             1138..1371
                     /locus_tag="VF308_11410"
                     /inference="COORDINATES: protein motif:HMM:NF024591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437311.1"
                     /translation="MAALVAHADHALDPAEIARYCESRLPHFAIPRYIDIVEELPRTE
                     NGKVQKHRLRERGVGARTWDRGADRHARPPRRS"
     gene            1388..>1651
                     /locus_tag="VF308_11415"
     CDS             1388..>1651
                     /locus_tag="VF308_11415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEX7437312.1"
                     /translation="MKISGTTRVFLILGDPVAQVRAPEVFNHVFRQHGVDAVLVPAKV
                     RPSRLTDFARHVLLADNIDGLWLAIPHKTAMVALLDRCDSLGRV"
BASE COUNT          246 a          596 c          562 g          247 t
ORIGIN      
        1 gtgtttctcg gctgcggctg gatcggcgcc gcgtcggtgc cgatcaacac cgcatcgatg
       61 gggccgcaga tcgaatactt cctcgccgac agcggcgcgc ggctgctggt gatcgaggcc
      121 gggctcgtcg accggctcgg cagggtggag atcggccgca ccgcgttgca ggcgatctgg
      181 atcatcggcg acgcggcccc cgtcgcactg gcgcagcagg tggcgtgcac gccgttcccg
      241 acgcaggctg aatcaaccgc gcccgccgac gtgcaacccg gcgagacgct cgcgatcctc
      301 tacacctcgg gcacgaccgg cccggccaag ggcgtgacct gcccgcatgc gcaattcgag
      361 gcgtggggcg cgaatacggc gcgcatcctc ggcatcaccg gggaagacat gctcggcacg
      421 acgctgccgc tctttcacat caatgcactc aacaccttcg cgcaggcggc gctcaccggc
      481 agccaggtgg atttcgcggc gcgcttctcg gcctcgggct tctgggccgc gatgcgcgcg
      541 gcgcacgcga cggtcgtcta tctgctcggc gcgatggtgc cgatgctgct cgcccagccg
      601 gccggcgaag cggagcgctc gcaccgcatc cgcctcggac tcggcccggg cgtgccggcc
      661 gccgcgggcc gggcgtttcg cgagcgcacc ggcatcgcgc tgctcgaagg ctacggatcg
      721 accgagacca acttcgtcat cgcgagcacg gccgagacgc cttgcgacgg caggatgggc
      781 tggctccagc ccgggttcga cgcgcgcgtc gtcgacgccc aggacgaaga gttgcccgcc
      841 ggagcggccg gcgaactggt gctgcgcgcc gacgcgccgt tcgccttcgc cagcggctac
      901 ttcaaccggc ccgaggacac cgtgcgcgcc tggcgcaatc tctggttcca taccggcgac
      961 cgggtcgtgc gcgaagccga tggcgcgttc cgcttcatcg accgcatcaa ggacgcgatc
     1021 cgccggcgcg gcgagaacat ctcgtcgtac gaagtcgagc aggtgctgct cggccacccg
     1081 gcggtcgcgg ccgccgcagt ctacccggtc ggctccgaac tcgcctagga cgaggtgatg
     1141 gcggcgctgg tcgcccatgc cgaccatgcc ctcgatccgg ccgagatcgc ccgctactgc
     1201 gaatcgcgct tgccgcattt cgcgatcccg cgctacatcg acatcgtcga ggaattaccg
     1261 cgcaccgaga acggcaaggt acaaaaacat cggctgcgcg agcgcggcgt cggggcccgg
     1321 acctgggacc gcggcgcgga caggcacgcg aggcctccga ggcgaagctg aagacccatc
     1381 cgctcagatg aaaatctccg gcactacacg cgtcttcctg atcctcgggg accccgtcgc
     1441 gcaggtgcgt gcgccggagg tcttcaacca cgtgttccgc cagcatggcg ttgatgcggt
     1501 gctcgtgccg gccaaggtgc gcccgtcgcg gctcacggac ttcgcgcgcc acgtcttgct
     1561 ggccgacaac atcgacgggc tctggctggc gattccgcac aagaccgcga tggtcgcgct
     1621 gctcgaccgc tgcgactcgc tcggccgcgt t
//
LOCUS       DASVHM010000610         4223 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_766371, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000610 DASVHM010000000
VERSION     DASVHM010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4223
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_766371"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..335)
                     /locus_tag="VF308_11420"
     CDS             complement(<1..335)
                     /locus_tag="VF308_11420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437313.1"
                     /translation="MRDVQDCNRCRYVPAGPSGHYESWFLRANHPSLALAFWIRYTIF
                     SPKGRPEDAVGELWAIFFDGEAGRNFVVKESVPIAQCGFSPIDLDARIGVALLNQHHL
                     EGRAGSAGHT"
     gene            453..1244
                     /locus_tag="VF308_11425"
     CDS             453..1244
                     /locus_tag="VF308_11425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010462480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crotonase/enoyl-CoA hydratase family protein"
                     /protein_id="HEX7437314.1"
                     /translation="MTTVTVEDDGDIRIVTLNRPEVRNAVDGPTARLLADAFRAFDAD
                     PAARVAILRGAGDHFCGGADLKAVAGGLGDHDAALAWRADMAADGPMGPTRMQLGKPV
                     IAAVEGFAVAGGLELALWCDLRVASETATFGVFCRRFGVPLIDGGTVRLPRLIGESRA
                     LDLILTGRPVRAEEALAFGLANRVVRAGQAFNAALALARQIAAFPQTCMRNDRASVRA
                     QTGLPFAVAMASEFALGVQSLESGESVEGARRFADGAGRHGRFSG"
     gene            1354..2835
                     /locus_tag="VF308_11430"
     CDS             1354..2835
                     /locus_tag="VF308_11430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ada metal-binding domain-containing protein"
                     /protein_id="HEX7437315.1"
                     /translation="MTFDADAAYQAILARDARFDGRLFVGVTSTGVYCRPICRVRTPM
                     KKNCRFFTTAAQAEAATFRPCMKCRPEIAPGPGLPWTVMDASRTLARQAALGLEADAT
                     NGEAPSVAALAGRLGVSERHLRRIFIAEHGVTPLQYVQTRRLLLAKQLLTDTRLPVAQ
                     VALTSGFKSLRRFNAAFAGRYRMNPARLRRVAADTTASAPASELAVTVTLGYRAPYDV
                     AALLRFSAQRAIPGIETIDGLTLRRSVRAGTLATAPGWIAATFIPEAARVRLAFAPAL
                     APASGRIVGAVRRWLDLDAAPDSIDGALADLPGAPGLRLPGSLDGFELAVRAVLGQQV
                     TVAAARTLARRLVETFGTALATPWADIDRTFPAPASLATAPVERIAELGIIRARAAAI
                     IALAEAWPALAELLQARADPEALIARLCLLPGIGPWTAHYIAMRVLGWPDAFPPNDVA
                     VLKAMRQLFGTVSQREAHDHAQAWQPWRAYAVLRLWNTLGTST"
     gene            2832..3380
                     /locus_tag="VF308_11435"
     CDS             2832..3380
                     /locus_tag="VF308_11435"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019576818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEX7437316.1"
                     /translation="MTYATDSIRTTCTAQTVYRSPLGPLLLARTRAGLAGAWFEGQRH
                     HPPRLDAPYVANDPLFERVADQLERYFAGSLQSFDIPFDLQGTPFQRAVWQALLAIGP
                     GTTRSYGDIARAIGKPVAVRAVGAAVGRNPVSILVPCHRVIGSDGSLTGYAGGVDRKV
                     ALLRLESVRLGPTALRLRRPVH"
     gene            3483..>4223
                     /locus_tag="VF308_11440"
     CDS             3483..>4223
                     /locus_tag="VF308_11440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7437317.1"
                     /translation="MKQRDLVELFTLAAIWGGSFLFMRVGAPEFGPIPLAGLRVIGAA
                     LVMLPLLAMRGELGSFAKHWKPIMLVGLTNSALPFMFFSYAALTITAGLSAIFNAAAP
                     LFGAVIAWLWLRDKLTPTRTLGLVIGFLGVFGLAYSRASLKAGVDGSSAVFAVLACVV
                     ATISYGFSANFTKRYLTGVAPMAVAGGSQVGAALVMLMPTAFMWPSVMPGVVAWTNLA
                     LLAVVCTGLAYIMYFRLIANVGPANAITV"
BASE COUNT          582 a         1540 c         1420 g          681 t
ORIGIN      
        1 gtgtggccgg ccgaaccggc ccggccttcg agatgatgct ggttcagcaa tgcgacgccg
       61 atgcgcgcat cgagatcgat cggcgagaac ccgcactgcg cgatcggaac cgactccttg
      121 acgacgaagt tgcgaccggc ctcgccgtcg aagaagatcg cccagagttc gccgaccgcg
      181 tcttcgggtc ggcccttcgg gctgaagatc gtgtagcgga tccagaacgc gagcgcaagg
      241 gaaggatggt tggcgcgcag gaaccagctc tcgtagtgcc ccgacggccc agccgggaca
      301 tagcggcagc ggttgcaatc ctggacgtcg cgcatcacgt ggcctctgga attcgcggcc
      361 cgccacacag gccctgcttt gtagcgaagt tgggccgcgg ccgtcagcgt gaaaaccccc
      421 aacgcacgca tgcgcgcaga atgcccccca tcatgaccac cgtgaccgtc gaagacgatg
      481 gcgacatccg catcgtcacg ctgaatcgcc ccgaagtccg caacgccgtc gacgggccga
      541 cggcgcgtct cctggccgat gcgttccgcg cgttcgacgc cgaccccgcg gcccgcgtcg
      601 cgatcctgcg cggcgccggc gaccatttct gcggcggcgc cgacctgaag gccgttgccg
      661 gcggactcgg cgatcacgac gcggcgctcg catggcgcgc cgacatggcg gccgacggtc
      721 cgatgggtcc gacccgcatg cagctcggca agccggtgat cgccgcggtc gaaggctttg
      781 ccgtcgccgg cggcctcgag ctcgcgctct ggtgcgatct gcgcgtcgcc tccgaaacgg
      841 cgacgttcgg cgtcttctgc cgccgcttcg gcgtgccgct gatcgacggc ggcacggtcc
      901 gcctgccgcg cctgatcggc gaaagccggg cgctcgacct gatcctcacc ggccgaccgg
      961 tgcgggccga ggaagcgctc gcgttcgggc tcgcgaaccg cgtcgtccgg gccggccagg
     1021 ccttcaacgc agcactcgcg ctggcgcgcc agatcgcggc gtttccgcag acgtgcatgc
     1081 gcaacgatcg cgcgagcgtg cgcgcccaga ccggcctgcc gttcgcggtg gcgatggcga
     1141 gcgaattcgc gctcggcgtg cagagcctcg agagcggcga atcggtcgaa ggcgcccggc
     1201 gttttgccga cggcgccgga cggcacggcc gcttttcggg ctgaagcacc ccgcgcggca
     1261 ccgtcccacc ccgtggccgg cgtcgtcgcc gagccctttg gcacatgtcc gaaaacggcc
     1321 agtctggccg gcaccgctgg tcataatggc cgcatgacct tcgatgccga cgccgcctac
     1381 caggccatcc tcgcgcgcga tgcgcgcttc gatggccgac tcttcgtcgg cgtcacgtcg
     1441 acgggcgtct actgtcgccc gatctgccgc gtgcgcacgc cgatgaagaa gaactgccgc
     1501 ttcttcacga cggccgcgca ggccgaggcg gcgacgtttc gcccgtgcat gaagtgccgg
     1561 cccgagatcg cccccggccc cggtctgccg tggacggtga tggacgcatc gcgcacgctc
     1621 gcgcgtcagg cggcgctcgg gctcgaagcg gatgccacga acggcgaggc gccgagcgtc
     1681 gcggcactcg ccgggcgcct gggcgtcagc gaacgccacc tgcgtcgcat cttcatcgcc
     1741 gagcacggcg tcacgccgct gcaatacgtg cagacgcgcc gcctgctgct cgccaagcag
     1801 ttgctgaccg acacgcggct gccggtcgcg caggtcgcat tgacgagcgg cttcaagagt
     1861 ctgcgccggt tcaacgcggc gttcgcgggg cgctaccgca tgaacccggc gcgcctgcgc
     1921 cgcgtggccg ccgacacgac ggcgagcgca ccggcgagcg agctcgccgt gaccgtgacg
     1981 ctcggctatc gtgcccccta cgacgtcgca gcgctgctgc gcttcagcgc gcagcgcgcg
     2041 attcccggca tcgaaacgat cgacggcctc acgctgcggc gcagcgtgcg cgccggcacg
     2101 ctcgccacgg cgccgggctg gatcgcggcg accttcatcc ccgaagcggc gcgcgtgcgc
     2161 ctcgctttcg ccccggcgct cgcgccggcg agcggccgca tcgtcggcgc ggtgcggcgc
     2221 tggctcgacc tcgacgccgc cccggattcg atcgacgggg cgctcgccga cctgcccggc
     2281 gcaccggggc tgcgcttgcc cggcagcctt gacggcttcg aactcgcggt ccgtgcggtg
     2341 ctcggccagc aggtcacggt cgcggcggcg cgcacgctcg cgcgccggct cgtcgaaacg
     2401 ttcggcacgg cgctggccac gccctgggcc gacatcgatc ggacctttcc cgcgccggcc
     2461 agcctcgcca cggcgccggt cgaacggatc gccgaactcg gcatcatccg cgcgcgcgcc
     2521 gcggccatca tcgccctggc ggaagcgtgg ccggcgctcg ccgagctgct gcaggcgcgc
     2581 gccgaccccg aagcgctgat cgcgcgcctg tgcctgctgc ccggcatcgg cccctggacc
     2641 gcgcactaca tcgcgatgcg ggtgctcggc tggcccgacg cctttccgcc caacgatgtc
     2701 gccgtgctga aggcgatgcg gcaactcttc ggcaccgtct cgcagcgcga agcgcacgac
     2761 catgcgcagg cctggcaacc gtggcgcgcc tatgccgtgc tgcgcctctg gaacaccctg
     2821 ggaacttcga catgacttac gcgaccgatt cgatccgcac cacctgcacc gcgcagaccg
     2881 tctaccgatc cccgctcgga ccgctcctcc tcgcgcgcac gcgcgccggg ctcgccggcg
     2941 cctggttcga agggcagcgc catcatccgc cgcgcctcga cgcgccgtat gtcgcgaacg
     3001 acccgctctt cgaacgcgtc gccgaccagc tcgagcgcta ttttgcgggc tcgctgcaat
     3061 cgttcgacat ccccttcgat ctgcagggca cgccgttcca gcgcgcggtc tggcaggcct
     3121 tgctcgcgat cggcccgggc acgacgcgca gctacggcga catcgcccgc gcgatcggca
     3181 agccggtcgc ggtgcgtgcg gtcggcgcgg cggtcggacg caacccggtc tcgatcctcg
     3241 tgccgtgcca ccgcgtgatc ggcagcgacg gatcgttgac cggctacgcc ggaggcgtcg
     3301 accgcaaggt cgcgctgcta cggctcgagt cggttcgtct cggaccgacg gccttgcgcc
     3361 tgcgccggcc cgtgcattga aagccgcgga cagcgccgtc gcgcgctcgg tgatccgcgt
     3421 gaccggcgcg ccgctgttgc cgctgccgcg cccgaaactg cgcggccaga tgccgtaacg
     3481 gcatgaagca acgcgacctt gtcgagctgt tcacgctcgc cgcgatttgg ggtgggtcct
     3541 tcttgttcat gcgagtcgga gcgccggagt tcggtccaat cccgctcgcg gggctgcgcg
     3601 tcatcggtgc cgccttggtg atgcttccgc ttctcgccat gcgcggggag cttggatcgt
     3661 tcgccaagca ctggaagccg atcatgttgg tgggcctcac caactccgcc ctgcccttca
     3721 tgttcttcag ctatgccgca ctgaccatca ctgccggctt gagtgccatc ttcaatgcag
     3781 cagctccgct tttcggagca gtgatcgcgt ggctctggct tcgcgacaag ctcactccca
     3841 cgcgaaccct cggtctggtg atcggcttcc tgggtgtgtt tggtcttgcc tacagcaggg
     3901 ccagtttgaa ggcgggtgtt gacgggtcca gcgcagtgtt cgcggtgctc gcgtgcgtcg
     3961 tcgcgacgat ttcgtacggt ttctcggcca atttcacaaa gcgctacctc accggcgttg
     4021 cgccgatggc agttgcagga ggaagtcagg tcggtgccgc gcttgtgatg ctcatgccaa
     4081 ccgcattcat gtggccgtcg gtcatgccgg gagttgtggc atggacgaac ctcgctctgc
     4141 tggcagtggt ctgcacgggc ttggcgtaca tcatgtactt ccgactgatc gcgaacgtcg
     4201 gacccgcgaa cgccattacc gtc
//
LOCUS       DASVHM010000611         2466 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_693665, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000611 DASVHM010000000
VERSION     DASVHM010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_693665"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..489)
                     /locus_tag="VF308_11445"
     CDS             complement(<1..489)
                     /locus_tag="VF308_11445"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437318.1"
                     /translation="MVAEAPTTSLRRTALYDAHVAAGAKLVPFAGWEMPVQYADGIKA
                     EHLAVRTAAGLFDVSHMGEIETAGPQATEFLQRLVTNDVTKIPVGGAQYALICRDDGG
                     VIDDLFTYRLGENRYLTVTNASNHEADFAWFTQNAGDFDVDVIDRANEYAMLALQGPT
                     ARD"
     gene            complement(755..1885)
                     /gene="ftsZ"
                     /locus_tag="VF308_11450"
     CDS             complement(755..1885)
                     /gene="ftsZ"
                     /locus_tag="VF308_11450"
                     /inference="COORDINATES: protein motif:HMM:TIGR00065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEX7437319.1"
                     /translation="MNDFDYTPSGGGHSGPDAGSYLAVIKVVGVGGGGTNAVNRMVDA
                     GLKGVEFIAVNTDAQALQMCDADVKLNIGSHLTKGLGAGADPAIGAGAAAESRDDIKE
                     SLKGADLVFVTAGEGGGTGTGAAPIIAEIAKQEVGALTVGVVTRPFAFEGSQRAKQAD
                     DGIQRLREQVDTLIVIPNERLLSTVERRTSILDAFRDADNVLRQGVQGITDLITTPGL
                     INLDFADVRTIMHDAGSALMGIGSASGEQRAGESAKNAISSPLLEESVEGATGILLNI
                     TGGRELGLFEVNEAAEIVSSAADQNANIIFGAVIDESMGDEVRVTVIATGFDRGRAGR
                     RDDFSSGRSERRPRRDVGPRDVASASLEIGDDDIDIPDFLKN"
     gene            complement(2077..>2466)
                     /locus_tag="VF308_11455"
     CDS             complement(2077..>2466)
                     /locus_tag="VF308_11455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437320.1"
                     /translation="RVKTLKWGRTGITLVLEKGVLLNFGSATDVTAKWRAVAAVLASD
                     AAKGAKYIDLRVPGRPAIGGLGAAPVTPKPQPLALSPTAPTSAAPGSAAAVLTPQSLA
                     QQTPPAVQTLAPAAPGTGNGTAAPPSH"
BASE COUNT          376 a          814 c          822 g          454 t
ORIGIN      
        1 gtcgcgcgcg gtcggcccct gcagcgcaag catcgcgtac tcgttcgccc ggtcgatcac
       61 atcgacgtcg aaatcaccgg cgttctgcgt gaaccaggca aaatcggcct cgtggttgga
      121 cgcgttggtg accgtcaggt agcggttctc gccgaggcgg taggtgaaga ggtcgtcgat
      181 cacgccgccg tcgtcgcgac agatcagcgc atattgggca ccgccgaccg ggatcttggt
      241 gacgtcgttg gtcaccaggc gctgcagaaa ctcggtcgcc tgcgggccgg cggtctcgat
      301 ctcgcccata tgcgaaacgt cgaacagccc ggcagcggtg cgcacggcca gatgctcggc
      361 cttgatgccg tcggcgtact ggaccggcat ctcccagccg gcgaacggca cgagcttcgc
      421 gcccgcggcg acgtgcgcgt cgtaaagagc ggtgcggcgc agcgatgttg ttggtgcttc
      481 ggcgaccatc gggcggccag cctactacga aggccgatcg ccccggaatt gcgcggccca
      541 ttgcgaagcg gttttccgca gcgacatacg tacttgctgc gcagcgggta cggatgttgc
      601 tgcgggattt cgctttgcgc cacggtccag ggtcgcggtg cgacgcgctc gctttgcgcc
      661 acggtccagg gtcgcgatgt gacgctctcg ctaccgaggg cgcggttcgg tgcgcgggca
      721 aacgacggcg cacggcatcg cttgccgcgg ccggttagtt cttcagaaag tccgggatgt
      781 cgatgtcgtc gtcgccgatt tccagcgacg cgcttgcgac gtccctcggg ccgacgtcgc
      841 ggcgcgggcg gcgctcggag cggccgctgc tgaaatcgtc ccgacggccg gcgcggcctc
      901 tgtcgaagcc ggtggcgatc acggtgacgc gcacctcgtc gcccatcgac tcgtcgatca
      961 cggcaccgaa gatgatgttg gcgttctgat cggccgcgct gctgacgatc tcggcggcct
     1021 cgttgacctc gaacaggccg agctcgcggc cgccggtgat gttcaacagg atgccggtcg
     1081 caccctcgac gctctcttcc agcaaaggcg agctgatcgc gttcttggcg ctttcgccgg
     1141 cgcgctgttc gcccgacgcg ctgccgatgc ccatcagcgc gctgccggcg tcgtgcatga
     1201 tcgtgcgcac gtcggcgaag tcgaggttga tcaggccggg cgtcgtgatc aggtcggtga
     1261 tgccctgaac accctggcgc agcacgttgt cggcgtcgcg gaaggcgtcg agaatcgagg
     1321 tgcggcgctc gaccgtcgac agcagccgct cgttcgggat cacgatcagc gtgtcgacct
     1381 gctcgcgcag gcgctggata ccgtcgtcgg cctgcttggc gcgctgcgat ccctcgaagg
     1441 cgaatggccg cgtgaccaca cccaccgtca acgcgccgac ctcctgtttg gcgatctcgg
     1501 cgatgatcgg cgcggcgccc gtgccggtcc cgccgccctc gcccgccgtg acgaagacca
     1561 ggtccgcgcc cttcaaagac tctttgatgt cgtcgcggct ttcggccgcg gcgcccgcgc
     1621 cgatcgcggg atcggcgccc gcgcccagac ccttggtcag gtgcgatccg atgttgagct
     1681 tgacgtcggc gtcgcacatc tgcagcgcct gcgcgtcggt gttgaccgca atgaactcga
     1741 cgcccttgag gcccgcgtcg accatccggt tgacggcgtt cgtgccgcca ccgccgacac
     1801 cgacgacctt gatgaccgcg aggtaactgc ctgcgtccgg gccactatgg ccaccgcccg
     1861 agggtgtgta atcaaaatcg ttcattgccg ccaatgtaac ggcctcccag cgccgcaata
     1921 aagctctaca acgtttcttg cagggcaatt cctcaatctg aacttgagac ttagcatact
     1981 ctcaggtgca ggttgaaggt tatcaagttg agcttcaggt acagagttat acacgatttc
     2041 ttggcaaagt cgcatgcgaa agcatcaagt cgttattcag tgagagggtg gcgcggcggt
     2101 tccgttaccg gttcccggcg ccgccggcgc cagcgtttgg acggcgggcg gggtctgctg
     2161 cgcgagcgat tgcggcgtca ataccgcagc ggccgatccc ggcgcagccg acgttggagc
     2221 cgtcggcgac agtgccagcg gctgcggctt gggcgtaacg ggcgcggcac cgagtccacc
     2281 gatcgccggc cggccgggta cgcgcagatc gatgtacttc gcgccctttg ccgcgtcgct
     2341 ggccagcacc gcggcgacgg cgcgccactt ggcggtcacg tccgtggcgc tgccgaaatt
     2401 cagcagaacg cccttttcga gcaccaatgt aatgccggta cgcccccatt tcagtgtttt
     2461 gacccg
//
LOCUS       DASVHM010000612         1806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_405331, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000612 DASVHM010000000
VERSION     DASVHM010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405331"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..1436
                     /gene="edd"
                     /locus_tag="VF308_11460"
                     /pseudo
     CDS             1..1436
                     /gene="edd"
                     /locus_tag="VF308_11460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018914743.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_function: GO:0004456 - phosphogluconate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
     gene            1515..>1806
                     /locus_tag="VF308_11465"
     CDS             1515..>1806
                     /locus_tag="VF308_11465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437321.1"
                     /translation="MFPPHAQGEQAMKSKRILILAALATSAGVYAAEGSASAPASADA
                     GIAQRVNAAAKKATQDAAEATRRAAARVSAAVHHAENAVGDSSKGAAQAVRRD"
BASE COUNT          274 a          660 c          626 g          246 t
ORIGIN      
        1 ctctggtcgc gcgacatcat cgcccaggcc accgcgatcg cgctgagcca cgcgatgttc
       61 gacggcgcgc tgatgctcgg cgtgtgcgac aagatcgtgc cgggcctgtt gatcggcgcg
      121 ctcgccttcg gccacctgcc gaccctcttc gtgcccgccg gccccatgac ctcgggcctg
      181 cccaacgacg agaaggcccg ggtgcgccag ctctatgccc aaggcaaggc cgatcgcgcg
      241 cagctgctcg cggccgagat ggcgagctag cacggcgccg gcacctgcac cttctatggc
      301 accgccaact cgaaccagat gctgatggag ctgatgggcc tgcacttgcc aggcagcgcc
      361 ttcgtcaacc ccggtacgcc gctgcgcgag gcgctcaccg cggccgcgac gaggcgggtg
      421 gccggcctca ccgcgctcgg caccgagtac acgccgatcg gggaaatcgt cgacgagcgt
      481 gccatcgtca acgccatcgt cggcctgctc gccaccggcg gctccaccaa ccacaccctg
      541 cacctggtgg cgatcgcacg cgctgccggc atcgcgatcg actggaccga tttcgacgaa
      601 ctctccggcg cgacgccgct gctcgcgcgc atgtacccga acggccaggc cgacgtgaac
      661 catttccacg ccgccggcgg catgggcctg ctgatccgcg agctgctcga cgccggcctg
      721 ctgcacgagg acgtgaggac ggtcatggac gagggcctgc acgcctatgc gcacgagccc
      781 tggctcgacg gcgggcggct ggactggggc gcgcccccgg ccgagccggc cgacctgact
      841 gtcttgcgca ccgcggccga ccccttccag cgcgacggcg gggtgtggct gctgtgcggc
      901 aacctcggcc gcgcgatctt caaggcttcg gcggtcaaac ccgagcaccg gagcgtgacc
      961 gcactcgcgc gcgtcttcga cggccaggac gaagtgctcg ccgccttcaa ggccggcgaa
     1021 ctcgaccgcg atgtggtcgt ggtcgtacgc ttccaggggc cgcgcgccaa cggcatgccc
     1081 gagctgcacc aagctcacgc cgagcctgtc ggtgctgcag gaccagggcc acagcgtcgc
     1141 gctggtcacc gatggccgca tgagcggcgc ttcgggcaag gtgccggccg ccatccacat
     1201 ctcgcccgag gctgcggccg gcggtccgct ggcccggctg cgcgacggcg acctcgttcg
     1261 cctcgacggc gacgcgggcg tgctcgaggc gatggtcgac gtcgacgtct ggggcgcgcg
     1321 cgaacgccct gcccgagccg ggcgtggccg aacacggcta tggccgcgag ctgttcgcaa
     1381 cccatcgcca tgcctgcgcg ggcgccgaac agggggccgt cagctgggcc atgtgatggc
     1441 actgcgaggc cgggccgaac cacaggctgc ttgcgccatg tcaacccgac cgccgggtcc
     1501 cgaagcgatg ctgcgtgttc ccgccccatg cgcaaggtga gcaagccatg aaatccaaac
     1561 gaatcctgat cctggcagcg ttggccacca gtgcgggtgt ctatgcggcg gaaggttctg
     1621 ccagcgcgcc ggcgtccgcc gacgcaggca tcgcgcagcg tgtgaacgcg gcggcgaaga
     1681 aggccaccca ggatgccgcc gaagcgacgc gcagggcggc agcgcgcgtc agtgcggccg
     1741 tgcaccatgc cgagaatgcc gtcggcgatt catcgaaggg cgctgcgcaa gccgtcaggc
     1801 gggacg
//
LOCUS       DASVHM010000613         3048 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_186997, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000613 DASVHM010000000
VERSION     DASVHM010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3048
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186997"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1937)
                     /locus_tag="VF308_11470"
     CDS             complement(<1..1937)
                     /locus_tag="VF308_11470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HEX7437322.1"
                     /translation="MKRMLINATQPEERRLAIVDGQKLMDFETEIEGREQRKGNIYKA
                     VVTRVEPSLEACFVDYGEDRHGFLPFKEISRNYFREGVDVRTARIQDAIREGDSLLVQ
                     VEKEERGNKGAALTTFVSLAGRYLVLMPNNPRGGGVSRRIEGEDREELKENLDQLEYP
                     KGMSLIARTAGIGRSAPELQWDLNYMLKLWSAIDGASKAGKGAFLIYQESSLVIRAIR
                     DYFTADVGEILIDTDDIFDQAQQFMSHVMPETAHKVKRYRDDAALFSRFQIEHQIETA
                     FARTVNLPSGGAIVIDHTEALVSVDVNSARSTRGSDIEETATRTNLEAADEIARQMRL
                     RDLGGLIVVDFIDMEESKNRREVETRLRDALRSDRARVQFSSISKFGLLEMSRQRLRP
                     ALSEGSHITCPRCNGTGHIRDTESSALQILRMVQEESMKENTAAVHVQVPVEVTSFLL
                     NEKRTEITKIELKQRVTVLLVPNKNLETPNYRLERLRHDDPRLENLQASYTMIDEPEE
                     EVGITRREKTKAKQEPVIKGILPETPAPQPVLKAEPAPVLAAPAALAPLVPKAPAGGG
                     FFAWVKGLFGGSESPPAAVLPTTATAAVAAQARTGEARADRGERGGRGGRGRDGRRGA
                     GERGEQRGERDSRRNAGPPPA"
     gene            2504..>3048
                     /locus_tag="VF308_11475"
     CDS             2504..>3048
                     /locus_tag="VF308_11475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005794229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein"
                     /protein_id="HEX7437323.1"
                     /translation="MPDRHSEAANARLNSEKSNTYGTGVEHRIIEGKDRRASVAGVRP
                     HPVVPIPAVHHVRIEEDSAGQRLDNFLVKLLKGVPKTHVYRVIRSGEVRVNKGRAGAD
                     TRLALGDEVRVPPVRTSAHAADRSDTAPAPPREFPVIYEDDHLLALDKPAGVAVHGGS
                     GVSFGVIEQLRRARPEARFLEL"
BASE COUNT          442 a          998 c         1057 g          551 t
ORIGIN      
        1 ctcgcaggcg gcgggccggc gttgcgacgg gaatcgcgct cgccgcgttg ttctccgcgt
       61 tctccagcgc cgcgccgacc gtcgcgcccg cgaccgccgc ggccgccgcg ttcacctcga
      121 tcggcgcgag cctcgcctgt cctcgcctgc gccgccaccg ccgcggtggc cgtcgtcggc
      181 agcaccgccg caggaggcga ctcgctgccg ccgaagagtc ccttcaccca cgcgaagaaa
      241 ccgccaccgg cgggggcttt cggcacgagt ggcgcgagcg ccgcaggcgc ggcgagcacc
      301 ggcgcgggtt ccgctttcag caccggctgc ggggccggcg tttccggcag gatgcccttg
      361 atgacgggct cctgcttcgc cttcgtcttc tcgcgccgcg tgatgccgac ctcctcttcg
      421 ggctcgtcga tcatcgtgta gctcgcctgc aggttttcga gccgcgggtc gtcgtggcgc
      481 aggcgctcga ggcggtagtt gggcgtctcg aggttcttgt tcggcaccag cagcacggtg
      541 acgcgctgtt tcagttcgat cttggtgatc tcggttcgct tctcgttgag gagaaacgac
      601 gtcacctcga ccggcacctg cacgtgcact gcggcggtgt tctccttcat cgactcttcc
      661 tgcaccatgc gcaggatctg cagcgcgctc gattcggtgt cgcggatgtg gcccgtgccg
      721 ttgcagcgcg ggcaggtgat gtggctgcct tcggaaagcg ccggacgcag gcgctggcgg
      781 ctcatttcga gcaggccgaa cttgctgatg ctcgagaact ggacccgggc acgatccgag
      841 cgcaaggcgt cgcgcaagcg cgtctcgact tcgcgccggt tcttcgattc ctccatgtcg
      901 atgaagtcga cgacgatcag gccgccgagg tcgcgcagcc gcatctggcg ggcgatctcg
      961 tcggcggctt cgaggttggt gcgggtggcg gtctcttcga tgtcgctgcc gcgcgtcgag
     1021 cgcgccgagt tcacgtcgac cgagaccagc gcctcggtgt ggtcgatcac gatcgcgcca
     1081 cccgagggca ggttcacggt gcgcgcgaac gcggtctcga tctggtgctc gatctggaag
     1141 cggctgaaga gggcggcgtc gtcgcgatag cgcttgacct tgtgcgccgt ctccggcatc
     1201 acgtggctca tgaactgctg ggcctggtcg aagatgtcgt cggtgtcgat caggatctcg
     1261 ccgacgtcgg cggtgaagta gtcgcggatc gcgcggatga cgagcgagct ttcctggtag
     1321 atcaggaacg cgcccttgcc ggccttggac gcgccgtcga tggcgctcca gagcttcaac
     1381 atgtagttaa ggtcccactg cagctcggga gcactgcggc cgatgccggc ggtgcgggcg
     1441 atcagcgaca tgcccttcgg atactcgagc tggtcgaggt tttccttcag ttcctcgcgg
     1501 tcttcgcctt cgatgcggcg cgacacgcca ccgccgcgcg gattgttcgg catcagcacg
     1561 aggtagcggc cggccaggct cacgaaggtc gtcagcgccg cgcccttgtt gccgcgctct
     1621 tccttctcga cctggaccag cagcgaatcg ccttcgcgga tcgcgtcctg gatgcgcgcg
     1681 gtgcgcacat cgacgccttc gcggaagtag ttgcgcgaga tttccttgaa cggcaggaag
     1741 ccgtggcggt cttcgccgta gtcgacgaag caggcttcga gcgaaggctc gacccgcgtc
     1801 accaccgcct tgtagatgtt gcccttgcgt tgctcacggc cttcgatctc ggtctcgaag
     1861 tccatcagct tctggccgtc gacgatggcg aggcgccgct cttcgggctg cgtcgcgttg
     1921 atcagcatgc gtttcatgtg cactcctcat ggcgcggcca tcctgcggcc gtgcgcaact
     1981 gtcagtcgcc gtcggctgcg agccgaaggc gacgattcga tgcacgagaa acgtgagtga
     2041 acctgaagga atcgccctgg gctgcgcgca accggctcgg tcagaggacc ggcggctcgt
     2101 gcagcgttgg cgcgcgcgcg gcagtggagc gggggaagcg cggcgagtcc gggtgccggg
     2161 tggacacgag ggtcgctgat tgcgcatcga cgggccgcat ccgagccgcg ccagccgtgc
     2221 tcgcgtcgca ggccagcggc cgcgagagcg agcgcacggg gcgcggtgga atggaagcct
     2281 gggtcaacat ccgcttcaag gagtcactgg acgcaggccg aagcttggag gcgcgggcgc
     2341 aggacgtgaa cctggcgctg gcgcaccctc gatcttcggc tcggaaacct ttgctcgggg
     2401 ttcgttcttg tttgctcttc cgctttgggc tggagccgca gcgtcacatg gggacgcggc
     2461 ccgcagcagc gccgaagcgt tgcatcaccg gtggccgggc acaatgcccg accgccactc
     2521 cgaagccgca aatgcgaggc taaactctga aaaatcaaac acttacggca ccggcgtgga
     2581 gcatcgcatt atagagggga aagaccggcg ggccagcgtg gccggcgtgc gcccgcaccc
     2641 cgtcgtgcca attccggccg ttcatcatgt ccgcatcgag gaggattcgg ccggacagcg
     2701 cctcgacaat tttctggtga agctgctcaa gggcgtgccg aagacgcatg tctaccgggt
     2761 catccgctcg ggcgaagtcc gggtcaacaa gggccgcgcc ggggcggaca cccggcttgc
     2821 gctcggcgac gaggttcgcg tcccgccggt tcggacttcg gcgcatgccg ccgaccggag
     2881 cgacacggct ccggcgccgc cgcgagaatt ccccgtcatc tatgaagacg atcatctgct
     2941 cgcgctcgac aagccggccg gggtcgcggt gcatggtggc agtggcgtca gcttcggcgt
     3001 gatcgaacag ctgcggcgcg cgcggcccga ggcacgcttc ctggaact
//
LOCUS       DASVHM010000614         1980 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1270444, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000614 DASVHM010000000
VERSION     DASVHM010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1270444"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1292)
                     /locus_tag="VF308_11480"
     CDS             complement(<1..1292)
                     /locus_tag="VF308_11480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011301527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX7437324.1"
                     /translation="MHRTPLLPRTWAASFIFAGLCAAAPASFAQAEISGGAAATGAPV
                     PKSISVPQGRLDGADKDSTNFLHSNMNYAQTRYYPAAQINTTNVAKLRPAFQFQTEVL
                     ESMETAPIVVDGVMYITTSYNHLYALDAATGKEFWHYKHKMGAVTTFCCGPNNRGVAV
                     MGDRLYMGTLDAKLLAFDAKTGKVLWSTQIADPEAGYSETMAPVAVNGKVLIGTNGGE
                     YGIRGFVKAFDANDGKLLWTFDTIPETGHEGTWATKDATQRDLHRDIAAEKAQLAKNA
                     GFFKTLGGGVWMAPAIDKEANMAFFVVGNPSPDLYGAERPGDNLYTDSIVAVDLNTGA
                     KKWHYQYVPHDVWDLDAVSPVILTEAKGKDGKMTKVAIHGGKTGHVYVHDRATGELIR
                     FSEAMIPQENMWVLPTKDGARMLPGANGGVEWSPMAINP"
     gene            1425..>1980
                     /locus_tag="VF308_11485"
     CDS             1425..>1980
                     /locus_tag="VF308_11485"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEX7437325.1"
                     /translation="MTIRVRQRWSGAGALRAALLALALTAPFGARAQAPSNPTLNAQL
                     LVGARQGDVAQVERVLAAGAAPSSRNRLGKTALLLAAEKGNLAIVEAMLKRGADVDQA
                     SLEGVTPLMAASYAGAAPVVKRLLAAGAKTDVRDRMNKPAIVYAAGQGSAGAVDALLA
                     SGIDVDAAYEHGLTALMWAAGQGQA"
BASE COUNT          281 a          646 c          700 g          353 t
ORIGIN      
        1 ggattgatcg ccatcgggct ccactcgacg ccaccgttgg cgccgggcag catgcgggcg
       61 ccgtccttgg tcggcagcac ccacatgttt tcctgaggga tcatcgcctc gctgaagcgg
      121 atcagctcgc cggtcgcgcg gtcatgcacg tagacgtggc cggtcttgcc gccgtggatg
      181 gcgaccttgg tcatcttgcc gtccttgccc ttggcttcgg tcaggatgac gggcgagacc
      241 gcgtcgaggt cccagacgtc gtgcggcacg tactggtagt gccacttctt cgcgccggtg
      301 ttgaggtcga cggcgacgat cgagtcggtg tagaggttgt cgcccgggcg ctcggcgccg
      361 tacaggtcgg ggctcggatt gccgacgacg aagaaggcca tgttcgcctc cttgtcgatc
      421 gcgggcgcca tccagacgcc gccgccgagg gtcttgaaga agccggcgtt cttggcgagc
      481 tgcgccttct cggccgcgat gtcgcggtgc aggtcgcgct gggtcgcgtc cttggtcgcc
      541 caggtgcctt cgtggccggt ctcggggatc gtgtcgaagg tccagagcag cttgccgtcg
      601 ttggcgtcga aggccttgac gaagccgcgg atgccgtact cgccgccgtt ggtgccgatc
      661 agcaccttgc cgttgacggc gaccggcgcc atcgtctccg agtagccggc ttccgggtcg
      721 gcgatctgcg tcgaccagag caccttgccg gtcttggcgt cgaacgcgag cagcttggcg
      781 tcgagcgttc ccatgtagag ccggtcgccc atgacggcga cgccgcggtt gttcgggccg
      841 cagcagaagg tcgtcaccgc gcccatcttg tgcttgtagt gccagaactc cttgccagtc
      901 gcggcgtcga gcgcgtacag gtggttgtac gaggtcgtga tgtacatgac gccgtcgacg
      961 acgatcggcg cggtctccat cgactcgagc acttcggtct ggaactggaa agccgggcgc
     1021 agcttggcga cgttggtcgt gttgatctgc gccgccgggt agtaccgggt ctgcgcatag
     1081 ttcatgttcg agtggaggaa gttggtgctg tccttgtcgg caccgtcgag cctgccctgc
     1141 ggcaccgaga tgctcttcgg caccggcgcc ccggtggcgg cagcacctcc cgagatctcg
     1201 gcctgggcga acgacgcagg cgcggcggcg cacagtcctg cgaagatgaa cgaagctgcc
     1261 caggtccgcg gcagaagggg ggttcgatgc atggctgtct cctgttgtcg cgacggaact
     1321 atgcccggtc gcgtttttca cgattgcaag ggtatcgaca atcgggccca ctgcctatcg
     1381 atttatatcg ctgcattgca gcacggacga caaggtttga cgcgatgacg atacgggttc
     1441 gacaacgatg gtccggcgcg ggcgcgctcc gcgccgccct gcttgcgctc gcgctgacgg
     1501 caccgttcgg ggcccgcgcg caggcgccga gcaacccgac cctcaatgcg cagctgctgg
     1561 tcggcgcacg ccagggcgac gtcgcccagg tcgagcgcgt tctcgccgcc ggcgcggcgc
     1621 cgagctcgcg caaccggctc ggcaagaccg cgctgctgct cgccgccgag aagggcaacc
     1681 tcgccatcgt cgaagcgatg ctgaagcgcg gcgccgacgt cgaccaggcg tcgctcgagg
     1741 gcgtgacacc gctgatggcg gcaagctacg ccggcgccgc ccccgtcgtc aagcgcctgc
     1801 tcgcggccgg tgcgaagacc gacgtgcgcg atcgcatgaa caagccggcg atcgtctacg
     1861 cggcgggcca gggaagcgcc ggcgcggtcg acgcgttgct cgcttccggc atcgacgtcg
     1921 acgccgccta cgagcatggg ctgaccgcgc tcatgtgggc cgcggggcag ggccaggccg
//
LOCUS       DASVHM010000615         1694 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1054440, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000615 DASVHM010000000
VERSION     DASVHM010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1054440"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..398)
                     /locus_tag="VF308_11490"
     CDS             complement(<1..398)
                     /locus_tag="VF308_11490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015914106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437326.1"
                     /translation="MRYFTLAAVAAASLASGVALAKLPPISDEAKAKVAETASKAAWT
                     DKVGLYQLCQSMDHVASAYRASAAAAGKAASGADPSPPCADPGPYATQITPAASKPLE
                     ASGAHSPPGMAVSPPSNKATSAATTRSTRSP"
     gene            complement(424..1614)
                     /locus_tag="VF308_11495"
     CDS             complement(424..1614)
                     /locus_tag="VF308_11495"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007861302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009326 - formate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009061 - anaerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HEX7437327.1"
                     /translation="MRAKVLTAALAAMLMAFAGAAAAQPAPTPAPSQTQIQIIPGDGP
                     ATPIVVAPGTTTTITTTVLPDPQPGESNAQRARSQPLNNAPFWRGVRESGNAPGSVNN
                     LKMGERGVLIQPMTSYPGTRTTTAGEAWRQIRNWWIIPYGGALVVIVVLALALYYWAK
                     GPIGGHEPDTGRVIERFTYFERAAHWANAIAFCVLAISGLVMAFGKFLLLPLTGGLLF
                     GWLTWFLKTAHNFAGPLFAVSMVIVFLTFVRSSMPRREDLTWIRKGGGMFGGEETRSH
                     RFNAGEKFVFWGGVVVLGAIVIVSGFVLDKVVPSLETTRGDMQLAHIVHAIAAMLIVA
                     VFLVHMYMGTIGMRGAYQAMRTGYVDEGWAREHHRLWYDDIAAGKIPAQRTVPRGGTE
                     QPAA"
BASE COUNT          236 a          571 c          616 g          271 t
ORIGIN      
        1 ggcgatcgtg tcgatcgcgt tgtggcggcc gacgtcgcct tgttgctcgg cgggctgacc
       61 gccatgccgg gcggcgaatg cgcgcccgat gcctcgagag gcttcgatgc cgccggcgtg
      121 atctgggtcg cgtagggccc ggggtcggcg cacggtggcg acgggtcggc gcccgaggct
      181 gccttgcccg ccgccgcggc gctcgcgcgg taggcggagg cgacgtggtc catcgactgg
      241 cacagctggt acaggccgac cttgtccgtc caggccgcct tgctcgccgt ctcggcgacc
      301 ttggccttgg cctcgtcgga gatcggcggc agcttggcga gcgcgacgcc gctggcgagg
      361 ctggccgcgg cgacggcggc aagggtgaag tagcgcatag ggtctcctct cgcgttgacc
      421 gccctaggcc gcgggctgct cggtgccgcc gcgggggacg gttcgctggg ccgggatctt
      481 gccggctgcg atgtcgtcgt accagagccg gtggtgctcg cgcgcccagc cttcgtcgac
      541 gtagccggtc ctcatggcct ggtacgcgcc gcgcatgccg atcgtgccca tgtacatgtg
      601 gacgaggaac acggcgacga tgagcatggc cgcgatcgcg tggacgatgt gcgcgagctg
      661 catgtcgccg cgcgtcgtct cgaggctggg aacgaccttg tcgaggacga agcccgagac
      721 gatgacgatc gcgccgagga cgacgacgcc gccccagaac acgaacttct cgccggcgtt
      781 gaagcggtgc gaccgcgtct cctcaccgcc gaacattccg ccgcccttac gaatccatgt
      841 gaggtcctcg cgcctcggca tgctgctgcg aacgaaggtc aggaagacga tcaccatcga
      901 caccgcgaac agcgggccgg cgaagttgtg cgccgtcttc aggaaccagg tgagccagcc
      961 gaacagcagc ccgccggtca gcggcaggag caggaacttg ccgaacgcca tcaccagccc
     1021 cgagatggcg aggacgcaga aggcgatcgc gttggcccag tgggcggcgc gctcgaaata
     1081 ggtgaagcgc tcgatgaccc ggccggtgtc gggctcgtgg ccgccgatcg gccccttggc
     1141 ccagtagtag agcgcgagcg cgaggacgac gatgacgacg agcgccccac cgtagggaat
     1201 gatccaccag ttgcggatct gccgccacgc ctcgcccgcc gtcgtcgtcc gcgtgccggg
     1261 gtagctcgtc atcggctgga tcaggacgcc gcgctcaccc atcttcaggt tgttcaccga
     1321 gcccggtgcg ttgcccgact cgcggacgcc gcgccagaac ggcgcgttgt tgagcggttg
     1381 gctgcgcgcg cgctgggcgt tgctctcacc cggctgcgga tcgggcagca ccgtcgtcgt
     1441 gatcgtcgtc gtcgtgccgg gtgcgacgac gatcggcgtt gccgggccgt cgcccggaat
     1501 gatctggatc tgcgtctgac tcggcgcagg cgtcggcgca ggctgcgccg ccgcggcgcc
     1561 cgcgaacgcc atcagcatcg cggccagcgc cgcggtcaag accttcgctc gcatggcgtc
     1621 tccccggaag ctcatttgcg cggtgcgtag tcgttctggg cctgggcgcg attggccatc
     1681 tgggcgttcc agct
//
LOCUS       DASVHM010000616         3224 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1127490, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000616 DASVHM010000000
VERSION     DASVHM010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3224
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1127490"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(265..738)
                     /locus_tag="VF308_11500"
     CDS             complement(265..738)
                     /locus_tag="VF308_11500"
                     /inference="COORDINATES: protein motif:HMM:NF017355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEX7437328.1"
                     /translation="MQHGGYTARIEYDDEDGLFVGRVLGLRALVDFHGETVAELRKAM
                     QLAVDEYVASCKKRGLKPEKAATGNFALRMPPEVHGAAAIVAEASGKSLNQLISEAVA
                     RMVSEVSSINAAARQSAQMSSSDVFPLLQRIGERSKSRTTRKADKTRPSGARRHA"
     gene            complement(744..1001)
                     /locus_tag="VF308_11505"
     CDS             complement(744..1001)
                     /locus_tag="VF308_11505"
                     /inference="COORDINATES: protein motif:HMM:NF019540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HEX7437329.1"
                     /translation="MSGKHRKTLSAVFADPVPGSIKFADIESMLVSFGGTVTEGAGSR
                     VRFDLPSGEQWHTHRPHPGKEAKRYQVRDIRELLARIGVTP"
     gene            complement(1211..1633)
                     /locus_tag="VF308_11510"
     CDS             complement(1211..1633)
                     /locus_tag="VF308_11510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437330.1"
                     /translation="MDLKDFIQTAVTQVVEGVVAAQAAAAAHRVVVNPAIDVGGRGTP
                     TAQGAAGSRVSNISFDVAVTGVEGSAAQGSGKLQVVGAWSARAGAETHATGEPCTRLQ
                     FSLPIAFPEARLRRSMANALDSEFLQTVDNGDSTWLPS"
     gene            complement(1656..2411)
                     /locus_tag="VF308_11515"
     CDS             complement(1656..2411)
                     /locus_tag="VF308_11515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar regulator YcgR PilZN domain-containing
                     protein"
                     /protein_id="HEX7437331.1"
                     /translation="METRPAPLQGMSDDQGLDEFRVSSPREIGTLLKQLLDGSVLLNL
                     NGSDGRVFTSAIWTLDSTRGTIGFNADPNDPAMQSVLHSREVVVVGYLESVKVQFDVQ
                     NLVLVHGNRASVLSCPFPREMFRFQRRNAFRVRPLMRTAPTARLRHPDMPDTEFALRV
                     IDISIGGCALFLPDDVPMMNAGVVLGGVRMELDDDTKLDVNLRLQHVTSLNSEARGLR
                     LGFEFIRPGGDTLRTLQRFIDLTQKRGKLMALN"
     gene            complement(2461..2760)
                     /locus_tag="VF308_11520"
     CDS             complement(2461..2760)
                     /locus_tag="VF308_11520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FliT"
                     /protein_id="HEX7437332.1"
                     /translation="MNSVLLNYYEAIEKASQDMLEAARKGNWDHVVKLEGACALLIAQ
                     LKNTAAETPLPADEAQLKSRLMQRILINDAEIRQLAEPWLEDLDDILAGRPKTLH"
     gene            complement(2793..>3224)
                     /gene="fliS"
                     /locus_tag="VF308_11525"
     CDS             complement(2793..>3224)
                     /gene="fliS"
                     /locus_tag="VF308_11525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEX7437333.1"
                     /translation="APAAMSRHASQANAHAYRRVGVETGVDAATPHQLVTMLFEGFGD
                     AIAQARAALQRCDIEAKCKAITRAVRIVDEGLKASLDVRAGGKLAEDLLALYGYVALR
                     LTQANLNSDAAALDECQTLLEPVRSAWAAIGPGVAGAAEVQ"
BASE COUNT          503 a         1037 c         1086 g          598 t
ORIGIN      
        1 cttcgctgcg gcggtcaccg ctacgcggtg actgccctgc ggtgctcggc ctcggggccc
       61 gccgccgaac tcgctacgtt cacttcgttc actgcgctca aacagccgcg gcgagtcaga
      121 tattgaagtg cgctgcgcgc gcggccccga gtcctgcgct cctcggcgcc gcagaggcgc
      181 accaccggcc acccacccgc ggcttggcgt gcaatcgcga gtacgtcgac caagggcgtt
      241 gcgtcattcc ggtcttgtcg ctcgctaggc atgacgtcgc gccccgctag gtcgggtctt
      301 gtcggccttt cttgtggtgc ggctcttcga cctctcacca attcgctgca gcagaggaaa
      361 cacatctgaa gaggacattt gtgccgattg ccttgcggca gcattgatcg aactcacttc
      421 gctgaccata cgcgcgaccg cctcgctgat cagctgattc agactcttcc ctgacgcttc
      481 ggcaacaatg gcggctgcgc catgcacttc gggcggcatg cgtagggcga agttgccagt
      541 cgccgccttc tccggcttca ggccgcgctt cttgcaagag gcgacgtatt cgtcgacggc
      601 aagttgcatc gcctttcgca gttcggcgac cgtctctccg tggaagtcca cgagcgcgcg
      661 aagcccgagg actcgcccga caaagagacc atcttcgtcg tcgtattcaa tgcgggcggt
      721 atagccgccg tgttgcatgg tgttcaaggt gtcactccga ttcgcgcgag caattcgcgg
      781 atgtcacgga cttggtatcg ctttgcttcc tttccaggat gtggccgatg cgtatgccac
      841 tgttcgccgg agggcaagtc aaagcgaact cgcgatccag cgccctcggt gaccgtgccc
      901 ccaaaagaca ccagcatcga ctcgatgtca gcgaatttga tcgagcccgg aacaggatct
      961 gcaaaaacag cagacaaagt tttgcgatgc ttgccgctca cgacacatga tatcagaaaa
     1021 agatatcaag gattgtgtct atcgcaaaga cgcggccggg cagccgccgc agtcgaagcg
     1081 aagaacgctg cccggcagcg cctttgcgcg ctcaggcggt agaccgaatc tcgatcgcgg
     1141 aggtcagttc ggccccgtca acttgccggc tcaagacgat cgctgcctgg cggcaggggc
     1201 cagtccgctc ctagctcggc agccaggtgc tgtcgccgtt gtcgacggtt tgcaggaatt
     1261 ccgaatcgag cgcgttcgcc atcgaacggc gcaagcgcgc ctcgggaaac gcgatgggca
     1321 gcgagaattg caatcgcgtg cagggttcgc ccgtggcgtg cgtttctgct ccggcccgtg
     1381 ccgaccaggc tcccaccact tgcagcttgc cgctgccttg cgccgcggag ccttcgaccc
     1441 cggtcaccgc gacgtcgaaa gaaatattgc tcacgcggga gccggctgcc ccttgagcgg
     1501 tcggcgtgcc ccgtccgccc acgtcgatgg cggggttgac gaccacgcgg tgggccgcgg
     1561 ccgccgcctg ggccgcgacg acgccctcga cgacctgcgt gacggcggtc tgaatgaagt
     1621 ccttgagatc catggcggtt ccttgagaaa gacgatcagt tcagagccat caacttgccg
     1681 cgcttctgcg tcaagtcgat gaagcgctgc agcgtgcgca gggtgtcgcc gccggggcgg
     1741 atgaactcga agccgaggcg caggccgcgc gcctcgctgt tgagagaggt cacgtgctgc
     1801 aggcgcaggt tgacgtcgag cttggtgtcg tcgtcgagct ccatgcgcac gccgccgaga
     1861 acgacgccgg cgttcatcat cggcacgtcg tctggcagga agagggcgca gccgccgatg
     1921 ctgatgtcga tcacgcgcag ggcgaactcg gtgtcgggca tgtcggggtg gcgcaggcgc
     1981 gccgtcggcg cggtgcgcat cagcggccgc acgcggaatg cgttgcggcg ctggaagcgg
     2041 aacatctcgc gcgggaacgg gcagctcagg acgctggcgc ggttgccgtg caccagcacc
     2101 aggttctgca cgtcgaactg gaccttgacg ctctcgaggt agccgacgac gacgacttcg
     2161 cgcgagtgca ggaccgattg catcgccggg tcgttcgggt cggcgttgaa gccgatcgtc
     2221 ccgcgcgtgc tgtcgagcgt ccagatggcg ctcgtgaaga cgcggccgtc gctgccgttc
     2281 aggttgagca ggaccgagcc gtcgagcaac tgcttgagca gcgtgccgat ttcgcggggc
     2341 gacgagactc ggaactcgtc gagcccttgg tcgtccgaca tgccttgcag cggtgccggt
     2401 ctggtttcca tcgcgtctcc ttggaacgct ttcgatgcgg cgcttcgcct cgtcgctcga
     2461 tcagtgcagg gtcttcggac ggccggcgag gatgtcgtcg aggtcctcga gccagggttc
     2521 ggcgagctgg cggatctcgg cgtcgttgat caggatgcgc tgcatcaggc gcgacttcag
     2581 ctgcgcctcg tcggccggca gcggcgtctc ggcggcggtg ttcttcagct gcgcgatcag
     2641 gagcgcgcac gcgccttcga gcttgacgac gtggtcccag ttgcccttgc gcgccgcctc
     2701 gagcatgtcc tggctcgcct tctcgatcgc ttcgtagtag ttcagcagca cggaattcat
     2761 gcgggctccg gaagattgag tgcgttgcat gttcattgga cctcggccgc gccggcgacg
     2821 cccgggccga tcgcggccca ggccgagcgc accggctcca gcagggtctg gcactcgtcg
     2881 agcgcggcgg cgtcgctgtt caggttggcc tgcgtcaggc gcaacgcgac gtagccgtag
     2941 agcgcgagca ggtcttcggc gagcttgccg ccggcgcgca cgtcgagcga ggccttcagg
     3001 ccttcgtcga cgatccggac ggcgcgcgtg atcgccttgc acttggcttc gatgtcgcac
     3061 cgctgcaggg ccgcgcgggc ttgcgcgatc gcgtcgccga agccctcgaa cagcatcgtc
     3121 acgagctggt gcggcgtcgc cgcatcgacg ccggtctcga cgccgacccg gcggtaggcg
     3181 tgggcgttgg cttgggaggc gtgtcgggac atggcggcgg gggc
//
LOCUS       DASVHM010000617         1610 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_405586, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000617 DASVHM010000000
VERSION     DASVHM010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405586"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1021
                     /locus_tag="VF308_11530"
     CDS             <1..1021
                     /locus_tag="VF308_11530"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HEX7437334.1"
                     /translation="AGFGFTGTHAHLPSDQLITRCIDTCQAPLLIGEEARDIARLLQR
                     LARNPALQWIGRAGITTLAHAAIDIALWDLKAKAAQMPLWKLLGGPVRDAVRAYNTDI
                     GWLNIEDAALVAGAEHAVEQGFTGLKIKVGSTVPRDLRRLAAVRQAIGPDVTLAIDGN
                     GKWDLATCLRCCRAAEPFDVYWFEEPLWYDDVKGHAELARATPIPIALGEQLYTPDAF
                     AEFFAQRAIAWVQPDVTRMAGITDVLQVCDRRHEPGPRAAVLCASGLRGARVHPVDQG
                     LLHRSGRGRRRAFPPALGAARRHHADRRVEEVAPATPAPRMRRPATSGNDRYHGSLHR
                     LRVAS"
     gene            1018..1587
                     /locus_tag="VF308_11535"
     CDS             1018..1587
                     /locus_tag="VF308_11535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007864029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase family protein"
                     /protein_id="HEX7437335.1"
                     /translation="MNLRHAALALFGTFLVAACATAPAPTSYVVATLQPTRGNTAAGT
                     LWLSQDGPEVLIRGRISGLKPSQEHGFHIHEKGDCSSGDGMSAGGHLNPNGKPHGPQH
                     AEHHAGDLPALKADAGGIAEVRVRVSGTVLGSGAGDFAGKALIVHVSPDDYATQPTGN
                     SGARIACGVISTTAGQDAAGNALPIPKDL"
BASE COUNT          255 a          587 c          538 g          230 t
ORIGIN      
        1 cgccggcttc ggcttcaccg gcacccatgc gcacctgccg agcgaccagc tgatcacgcg
       61 ctgcatcgac acctgccagg ccccgctcct gatcggcgaa gaggcgcgcg acatcgcgcg
      121 cctcttgcag cgcctggcgc gcaatcccgc gctgcagtgg atcggacgcg ccggcatcac
      181 gacgctcgcc cacgccgcga tcgacatcgc cctctgggac ctgaaggcga aggcggcgca
      241 gatgcccctc tggaagctgc tcggagggcc agtgcgggat gccgtccgcg cctacaacac
      301 cgacatcggc tggctcaaca tcgaggacgc cgcgctcgtc gccggtgcgg agcacgccgt
      361 ggagcaaggc ttcacgggac tcaagatcaa ggtcggctcg accgtcccgc gcgacctgcg
      421 ccggctcgcc gcggtgcgcc aggcgatcgg cccggatgtc accctggcga tcgacggcaa
      481 cggcaaatgg gacctcgcga cctgcctgcg gtgctgccgc gcggccgagc cgttcgatgt
      541 ctactggttc gaggagccgc tctggtacga cgatgtcaag ggtcatgccg aactcgcgcg
      601 ggcgacaccg attccgatcg cgctcggcga gcagctctac acccccgacg ccttcgccga
      661 attcttcgcg cagcgcgcga tcgcctgggt ccagcccgac gtgacgcgca tggccggcat
      721 cacggacgtg ctgcaggtct gcgaccggcg acatgagcca ggtccacgtg cagctgtcct
      781 atgcgcatcc ggcctgcgcg gtgctcgagt acatcccgtg gatcaaggac tgcttcaccg
      841 atccggccga ggtcgtcgac gggcatttcc gcctgccctc ggagccgcgc gccggcacca
      901 cgccgaccga cgcgttgagg aggtggcgcc ggcgaccccg gcgccccgga tgcgacgtcc
      961 ggcaacgtcc ggcaacgacc ggtatcatgg atcgcttcac aggcttcgag tcgcgtcatg
     1021 aacctgcgcc atgctgccct tgcgttgttc ggcacgttcc tggtcgcggc ctgcgcaact
     1081 gcgccggcgc cgacgtccta cgtcgtggcc acgctccagc cgacccgcgg caacacggcg
     1141 gcgggcactc tctggctttc gcaggacggg ccggaggtgc tgatccgggg gcgcatctcg
     1201 ggcctcaagc cgagccagga gcacggcttt cacatccatg aaaaaggcga ctgctcgagc
     1261 ggcgacggca tgagcgcagg cggccacctg aacccgaacg ggaaaccgca cggcccgcag
     1321 cacgccgagc accacgccgg cgacctgccg gcgctgaagg cggatgccgg cggcatcgcc
     1381 gaggttcgtg tccgcgtgag cggcaccgtg ctcggctccg gtgccggcga cttcgccggc
     1441 aaggcgctga tcgtgcacgt cagccccgac gattacgcga cgcagccgac cggaaattcc
     1501 ggcgcccgca tcgcctgcgg ggtgatctcc acgaccgccg ggcaggacgc tgccggcaac
     1561 gccttgccga ttccgaagga tctgtagtcg gaaggcgaaa tctcggtcga
//
LOCUS       DASVHM010000618         1918 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_187292, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000618 DASVHM010000000
VERSION     DASVHM010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187292"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..757
                     /gene="prs"
                     /locus_tag="VF308_11540"
     CDS             <1..757
                     /gene="prs"
                     /locus_tag="VF308_11540"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011462719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEX7437336.1"
                     /translation="CRLLMFIATLKDHCAARVTAVVPYLAYARKDRQTKLHDPVGLRY
                     VAQLFDAVGVAQLIVLEAHNIAAFQNAFRCPTVHLSAHHAFGATAQEVDGTGPLAVVS
                     PDPGGVKRAQLWREALEDQLRRPVAFAMIDKSRSGGLLGGTQIVAGNVEGATVLLLDD
                     LIASGETLQRSAVALRRAGANDVIGCAAHGLFVGKAPEVLADAALSRLVVTDSVPPFR
                     LPEGGAVRGKLHVVSAVPLFAEAIRASHASWWQ"
     gene            complement(762..1808)
                     /locus_tag="VF308_11545"
     CDS             complement(762..1808)
                     /locus_tag="VF308_11545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437337.1"
                     /translation="MEPVADAPGPDVKLRCLQAALAPATPGEPVQFIETHMSWVVLGR
                     ERVLKLKKPVRYPFLDFSTVQAREHNSREELRLNRRLAPGVYLGLLALQWQDGVLALV
                     PEENLPAPGRTVDWVISMRRLPAARMLDRVIATGELLPRDVDALLDVLVPFYRHAPRA
                     DLGANDYLRSVRDDLAESRRVLEMPRFGLPGVHSLLDRMESSLEGHLDILRTRVRERR
                     IVEGHGDLRPEHVCLVEPPAIIDALEFDARLREIDPFDELCFLGLECAMAGDAGIGPQ
                     LVARCAVALDDHPPDALLHLHTARRALLRARLSAAHLLDDDIRTPQKWLPQAARYLGH
                     AGAALDALEARRAD"
BASE COUNT          271 a          669 c          702 g          276 t
ORIGIN      
        1 gtgccggctg ctgatgttca ttgcgacgct gaaggatcac tgcgccgcgc gtgtcaccgc
       61 cgtggtgccc tacctggcgt acgcccgcaa ggatcggcag accaagctcc acgatccggt
      121 cggcctgcgc tacgtggcgc agttgttcga tgcggtcggc gtggcccagc tcatcgtgct
      181 ggaggcgcac aacatcgccg ccttccagaa tgcgtttcgc tgcccgacgg tgcacctctc
      241 ggcgcaccat gccttcggag cgacggcgca ggaagtcgac ggcaccgggc cgctggccgt
      301 cgtctcgccc gacccgggcg gcgtcaagcg cgcgcagttg tggcgcgagg cgctcgaaga
      361 ccagctgcgc cggccggtcg ccttcgcgat gatcgacaag agtcgcagcg gcggcctgct
      421 gggcggcacc cagatcgtgg cgggcaacgt ggagggcgcc acggtgctgt tgctcgacga
      481 cctgatcgcc agcggcgaga ccctgcagcg cagcgccgtc gcattgcgcc gtgccggcgc
      541 gaacgacgtc atcggctgcg cggcgcatgg cctcttcgtc ggcaaggccc cggaggtgct
      601 tgccgacgcc gccctgtcgc gcctggtggt caccgacagc gtgccgccgt tccggttgcc
      661 cgagggcggc gcggtgcgcg gcaagctcca tgtcgtgtcg gcggtgccgc tcttcgccga
      721 agccatccga gccagccacg cctcctggtg gcagtgagcg tttagtcggc gcgacgcgcc
      781 tccagcgcgt cgagggccgc gccggcatgg cccaggtagc gtgccgcctg gggcagccac
      841 ttctgcggtg tgcggatgtc gtcgtcgagg aggtgggccg cgctgagccg cgcccgcagc
      901 agcgcgcgcc gcgccgtgtg cagatgcagc agcgcgtccg gcgggtggtc gtcgagcgcg
      961 acggcgcagc gcgctaccag ctgcgggccg atcccggcgt cgccggccat cgcgcactcg
     1021 aggccgagga agcacagttc gtcgaacggg tcgatctcgc gcaggcgcgc gtcgaactcg
     1081 agcgcatcga tgatcgccgg cggctcgacc aggcacacgt gctcggggcg caggtcgccg
     1141 tggccttcga cgatgcggcg ttcgcgcacc cgcgtgcgca ggatgtccag atgtccttcc
     1201 agactcgatt ccatgcggtc gagcaggctg tggaccccgg gcagcccgaa acgcggcatc
     1261 tcgagcacgc ggcggctctc cgcgaggtcg tcgcgcacgc ttcggaggta gtcgttggcg
     1321 ccgaggtcgg cgcgcggcgc gtggcgatag aacggcacca gcacgtcgag cagcgcatcg
     1381 acatcgcgcg gcagcagttc gcccgtggcg atcacccggt cgagcatgcg cgcagcaggc
     1441 aggcgccgca tcgaaatcac ccagtcgacg gtgcggccgg gcgcgggaag gttttcttcc
     1501 ggcacgagcg cgagcacgcc gtcctgccac tgcagcgcga gcagaccgag gtagacgccg
     1561 ggcgcgagcc gccggttcag gcgcaactcc tcgcgcgagt tgtgctcacg cgcctgcacc
     1621 gtcgagaagt cgaggaacgg gtagcgcacc ggcttcttca gcttcaacac ccgttcgcgc
     1681 cccagcacga cccaggacat gtgggtctcg atgaactgca ccggctcgcc gggcgtggcc
     1741 ggggcgagcg ccgcttgcag gcagcgcagc ttgacgtcgg gtccgggtgc gtcggcgacg
     1801 ggttccatgc gcggattcga gcacggcggc cggacgccca atgtgacgca gcgcaacccg
     1861 tgcaagcgcc cgcgggaacg ggagtgatcg tgtgcagccc cgaccctcag cgcgggca
//
LOCUS       DASVHM010000619         6009 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_187339, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000619 DASVHM010000000
VERSION     DASVHM010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6009
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187339"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..809
                     /locus_tag="VF308_11550"
     CDS             <1..809
                     /locus_tag="VF308_11550"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEX7437338.1"
                     /translation="VTLPLWHVDAVTGGGVHPIAFDLRQLIAGRSSTRAEKREEDSMG
                     NQRRPLQPGEASPAFALPSANRDGTVSLADLRGRPFLIGFYRGLHCPFCRRQVVQLGA
                     AQPALLAAGIETLAVINTPLERARMYFRHRPTPVTLLSDPDCLTHRAFGVPRGEFLPD
                     GSSEPPKWPYQATMEQFMAARINPTGEMPERVQPMEANTVLNAKDGFEMQEADDAIRA
                     NHPTQLVGHFLVDANGIVRWVQIEAPDDPNNLSIFPTAAELVAAASSLAH"
     gene            complement(817..4011)
                     /locus_tag="VF308_11555"
     CDS             complement(817..4011)
                     /locus_tag="VF308_11555"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX7437339.1"
                     /translation="MKCQRCQLDVAVDFAFCPGCGNKLAAASAAAPVAAADADRRSAT
                     VLFADLTGFTTISEKLDPEDVRALQTDLFGTLSGVVERFDAFVEKFVGDAVMAVFGAP
                     VAHEDDPQRALHAALEMHACVAVLSERWRDRLGHPLTLHIGINSGRVVAGNLGTSAGA
                     AYAVTGDTVNTAARLQAAAEAGQTLVSRATFQLTQREFEFESRGTLGLKGKSEALPVY
                     LLRGVGDRLQALRGLAMHGLTAPLIGRDAEIEQLLAAARQVPHGHAQVVSLVAEAGVG
                     KTRLVSALLERIGSTAGFANASVRRVVCSPFGQRPYGITAGLFREAYGIAPADSLEDA
                     RHKVADVLQAIGADDIELALVLPVIGYILGLQTLGQSDEAEPERLKRQIFMTLRTVLE
                     RRLSLGPLVLVIEDLQWADAASIEGLHTLSNWLCERPLMVVLSGRPPFDPVGLDVGRA
                     GHTVLKLLPLANGAIEALLAAFFGAAAEYPIERELHARIVLQAGGNPLYLEEVVRALI
                     SNGVLTCNADGWSCAPATDTVDVPSSIEGLLLSRVDHLPVQGRRTLQSAAILGSEFES
                     SLLAAVDEEASDPTVLEMLCDTEWLLPVRATGAPDKPEISRPAHRYRFASTLAHEVVY
                     QNLLLRRRTALHQRAGTVLEGLLGTSPTRLEDLEALCHHFSRSEDRARGARYLAAAGD
                     WARGIYANEDALRYYARALAILRNAGSPDDQAVVGIHEHMGDLLGPIGRRDEAHAQFD
                     AVVTLARAADDPVREGRAQRKLAGLHWDAGERDRSLDCLREGLRLLECRVEAVGSDIN
                     ADMELAHVFHEMGRLLFRSGDSRGADMWSRRALLQAEHAAERGRNDPVISQTAASAIS
                     HSLNTIGAALARLGRSAEAVERIERSVAVAQEAGLLQAACRSYANLGVLYSTLDPRRA
                     VQTCQLGLDAAKKIGDLGFQSRLYANLAVAFCSLTQRCDDEGLHAAQSAIDLDRQLGL
                     LDHLAVPLVVLGQIHQCHGNADNALRYYEEALVLAEEMDEPQLMFPCLEGMATVFLDQ
                     GDDARAESYFIRADEVCTKAGVDRDSLVVLPFLC"
     gene            complement(4041..>6009)
                     /locus_tag="VF308_11560"
     CDS             complement(4041..>6009)
                     /locus_tag="VF308_11560"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEX7437340.1"
                     /translation="EGERRVVVKRPGNTALVALAYLRPGASHPDFFAFEVLASVLGDG
                     VNARLYQALVERGLATSVYAENDALHDPFPLLVGATCAPGKTNAEVEAALKDALAALA
                     EKGITDAELKRAQQQIEVSVARLRDGPYLVASALGEAVASADWKWFLTYVDRIKAVSA
                     DDVRRVAATYLVPDRATVGWFVPAANVRSASAPAAADAATRPAAAATAPKTASARVVA
                     RPPIPTAAPPAVPFATRTVHSVLANGLVVDVVENHAVPLVAVRGLVMAGNVQATASQA
                     ALPALTGKMLARGTTSRSKEEIGALLAGVGAERRYVTTPTHVGIEADGMARDLPLVLD
                     VLADELRRPAFAAAELAKAKAELENDVLRADDDTSARAQERLAQLAFAPGHPYYPVGR
                     AAKLQGLGALGVTELREFHRARYVGAGAILAIVGDVDAAAVIAQVTKLFGDMPAGEKA
                     TFDGVARASAADRATREAVTMRGKANMNIVIGGASGLRRLDPDFEAALVSNAVFGQSA
                     LASRVGRRVRDTEGLSYSIGSRYAQTDVLDGVWQVNVNVAPQNLAKALRSTMDEIAKY
                     AREGATDAEVAIQKNFFAGNYQVNLGSNAGVASALVTAEKFGLGPRYLDDFPSRIRAV
                     TTAEANAAMRRHFVPEKLHVIVAGDLDGVPD"
BASE COUNT         1008 a         2070 c         1990 g          941 t
ORIGIN      
        1 tggtgacact tccactttgg cacgtcgatg ccgttacggg tgggggcgtc catcccattg
       61 ctttcgacct gcgacaattg atagcaggtc ggtcgtccac ccgagccgag aaacgcgagg
      121 aggattccat gggaaaccag cggcgcccgc tgcaaccggg cgaagcttca ccggcattcg
      181 cgctgccctc cgcgaatcgc gacggcacgg tctctctcgc cgatctgcgc ggccgaccgt
      241 ttctcatcgg cttctatcgc gggctgcact gcccgttttg tcgccgtcag gtcgtgcagc
      301 taggcgcagc gcagccggcc ctgcttgccg ccggaatcga gacgctggca gtgatcaata
      361 cgccgttgga acgcgcccgc atgtactttc gtcatcggcc gacaccggtc accttgctga
      421 gcgaccccga ctgcctgacg catagagcgt tcggtgtgcc gcgtggggag ttcctgcccg
      481 acggctccag cgaaccgccg aagtggccgt accaggccac catggagcag ttcatggcgg
      541 cacgcatcaa ccccaccggt gaaatgcccg agagggtaca accgatggaa gcgaacacgg
      601 tactcaacgc caaggacggc ttcgagatgc aagaagccga tgatgcgatc cgggcgaacc
      661 accccacaca gctggtcgga cactttctcg tcgacgcaaa cggcatcgtc cgttgggttc
      721 agatcgaagc ccccgacgat ccgaacaacc tctctatctt tccgaccgcg gcggagcttg
      781 tcgccgcagc gagcagcctc gcacactgac cgcacgtcag cacagaaacg gcaacacgac
      841 gagcgaatcg cgatcgacgc cggcctttgt gcacacctcg tcggcgcgga tgaagtagga
      901 ctcggcgcgg gcgtcgtcgc cttgatcaag aaacacggtc gccatgccct ccaggcacgg
      961 gaacatcagc tggggctcat ccatttcctc agccagcaca agcgcctcct cgtagtaccg
     1021 cagcgcgttg tcagcattgc cgtggcactg gtgaatctgc ccgagaacga ccagcggcac
     1081 cgccagatgg tcgagcagcc cgagctgccg gtcgagatcg atcgcggatt gcgctgcatg
     1141 cagcccctcg tcgtcacagc gttgagtgag cgagcaaaag gcgaccgcga gattcgcgta
     1201 gaggcgagac tggaaaccga ggtcgccaat tttcttggcg gcatcaagcc ccagctggca
     1261 ggtctgaacg gcgcgtcgcg ggtcgagcgt cgaatacagc accccaagat tggcatagct
     1321 tcggcaggcc gcctggagca gccccgcttc ctgtgccacc gcgacgctgc gctctatcct
     1381 ttcaacagct tcggccgaac gtccaagccg ggcaagcgcg gcgccgatcg tattgagtga
     1441 gtgtgagatt gccgaggcgg cggtttggct tatgaccgga tcgttccggc cacgctctgc
     1501 cgcgtgctcg gcttgcagca aggcgcggcg ggaccacatg tcggcaccgc ggctgtcgcc
     1561 gctccggaac aagagccgtc ccatctcgtg gaagacatgc gccagctcca tgtcagcgtt
     1621 gatgtcgctg ccgaccgctt ctacgcggca ctcgagtagc cgcaagccct cacgcaggca
     1681 gtccaggctg cggtcgcgtt cgcccgcgtc ccagtgcagg ccggccagct tgcgctgcgc
     1741 gcgcccctcg cgcacggggt cgtcggcagc acgtgccagc gtcacgacgg cgtcgaattg
     1801 agcatgggcc tcatcgcggc ggccgatggg ccccagcaag tcacccatgt gctcgtggat
     1861 gccgacaacg gcctgatcgt cgggcgagcc tgcgttgcgc agaatggcca gggcccgcgc
     1921 gtagtagcga agggcatcct cattggcgta gatgccgcgc gcccagtcgc ccgccgctgc
     1981 aaggtagcgg gcgccgcgcg cccgatcctc gctgcgactg aagtgatgac acagggcttc
     2041 caggtcttcc agccgcgtcg gactggtgcc gagcagacct tcgaggaccg tcccggcgcg
     2101 ctgatgcaat gcagtccgcc ggcgcaacaa caggttctgg tagaccactt cgtgcgcgag
     2161 ggtgctggca aagcgatagc gatgcgccgg acgtgaaatt tccggtttgt ctggcgcgcc
     2221 agtggctcgt accggaagca gccattcggt gtcgcacagc atctcgagca cggtcgggtc
     2281 gctggcctct tcatcgaccg cggccaaaag cgaggactcg aactccgagc ccaggatggc
     2341 ggcactttgc agcgtgcggc gaccctgcac cggcaggtgg tcgacccgcg acaacaagag
     2401 accttcgatc gacgatggga catccacggt gtcggtcgcc ggcgcacagg accatccgtc
     2461 tgcgttgcat gtcaggacgc cgttcgaaat cagcgcgcgc acgacctctt cgagatacaa
     2521 gggattgcca ccggcctgca gaacgatgcg cgcgtgcaat tcgcgttcta tggggtattc
     2581 ggcggcagcc ccgaagaagg cagcgagcag cgcttcgatc gcaccattcg ccaaaggcag
     2641 cagcttcagc actgtgtgcc cggcccggcc gacgtccagg cccaccgggt cgaacggcgg
     2701 gcggccgctc agcacgacca tcaagggacg ctcgcacagc cagttcgaca gcgtgtgcag
     2761 gccttcgatc gacgcggcgt ccgcccactg caagtcctcg atcaccagca cgagcggccc
     2821 aagggagagg cggcgctcga gcaccgtgcg caaggtcatg aaaatctggc gcttgagccg
     2881 ctcgggttcg gcctcgtccg attgccccag cgtctgcagg ccgaggatgt agccgatcac
     2941 cgggagcacc agagcaagct cgatgtcatc cgcaccgatg gcttgcaaga catctgcgac
     3001 cttgtggcgc gcgtcttcca gcgagtctgc aggtgcgatg ccgtaggcct cacgaaacag
     3061 gccggcggtg atgccatagg gtcgctggcc gaagggcgag cacacgacgc gtcggaccga
     3121 cgcgttggcg aatccggctg tggaaccgat ccgctcgagc agagcgctga ccagccgggt
     3181 cttgcccaca ccggcttccg cgaccaggct gacgacttgt gcgtggccgt gcggcacttg
     3241 cctcgcggca gccagcagtt gctcgatttc ggcgtcacgt ccgatgagcg gagctgtgag
     3301 cccgtgcatg gcgaggccgc gcaaggcctg cagtcggtca ccgacacccc gcagcaggta
     3361 gaccggcaag gcctcggact tgcccttcag ccccagcgtt ccgcgcgact cgaactcgaa
     3421 ctcgcgttgc gtgagctgga atgtcgcgcg actcaccagc gtctgccccg cctccgccgc
     3481 tgcctgcagg cgggccgctg tgttcacggt gtctccggtg actgcatagg ccgcgcccgc
     3541 cgacgttccg agattgccgg cgaccactcg gccggaattg atgccgatat ggagcgtcag
     3601 cgggtggccc agtcgatctc gccaacgctc actgagcacc gccacgcaag catgcatctc
     3661 gagcgcggcg tgcaaggcac gctgcgggtc gtcttcgtgc gccaccggcg cgccgaacac
     3721 cgccatcacc gcatcaccga cgaatttctc gacgaatgca tcgaaccgct cgacaacccc
     3781 gctcagggtg ccgaacaagt cggtctgcag ggcacgcaca tcctcgggat ccagcttctc
     3841 cgagatcgtc gtgaatccgg tcaggtccgc aaacagcacg gtggccgatc gacgatcggc
     3901 atcagctgct gcgaccggag ctgccgccga cgctgcggcc agtttgttcc cgcaaccggg
     3961 acaaaacgca aagtcgaccg ccacgtcgag ttggcagcgc tggcacttca tcaacacatg
     4021 gtaagccgtg gatagttccg tcagtcggga acgccgtcca ggtcgccggc cacgatcacg
     4081 tgcagcttct cggggacgaa gtgcctgcgc atcgcggcgt tggcctcggc ggtggtgacg
     4141 gcgcggatgc gcgacggaaa gtcgtcgaga taacgcgggc cgaggccgaa cttctcggcg
     4201 gtgacgagcg ccgatgccac cccggcgttc gagccgaggt tgacctggta gttgccggcg
     4261 aagaaattct tctggatcgc gacctctgca tcggtggcgc cctcgcgggc gtacttcgcg
     4321 atctcgtcca tcgtcgagcg cagcgccttc gccaggttct gcggcgcgac gttgacgttg
     4381 acctgccaca cgccgtcgag gacgtcggtc tgcgcgtagc gcgagccgat cgagtacgag
     4441 aggccttcgg tgtcacgcac gcggcggccg acgcgcgagg cgagcgcgct ctggccgaac
     4501 acggcgttcg acacgagcgc ggcctcgaag tccgggtcga ggcgacgcaa tccgctcgcg
     4561 ccgccgatga cgatgttcat gttggccttg ccgcgcatcg tcaccgcttc gcgcgtcgcc
     4621 cggtccgccg cgctggcacg cgcgacgccg tcgaacgtcg ccttctcgcc cgccggcatg
     4681 tcgccgaaaa gcttcgtcac ctgtgcgatc accgccgccg catcgacatc gccgacgatg
     4741 gccaggatcg cccccgcacc gacgtagcgc gcacggtgga actcgcgcag ctcggtcacg
     4801 ccgagcgcgc ccaggccctg cagcttcgcg gcgcgaccca cggggtagta cgggtgaccg
     4861 ggcgcgaacg cgagctgggc gaggcgctcc tgcgcgcgtg ccgaggtgtc gtcgtcggcg
     4921 cgcagcacgt cgttctccag ctcggccttc gccttggcca gctcggcggc cgcgaaggcg
     4981 ggccggcgca gctcgtcggc cagcacgtcg aggacgagcg gcaggtcgcg cgccatgccg
     5041 tcggcctcga tgccgacgtg ggtcggcgtc gtcacataac gtcgctcggc gccgacgccg
     5101 gcgagcagtg cgccgatctc ttccttcgag cgcgacgtcg tgccgcgcgc gagcatcttg
     5161 ccggtgagcg cgggcaacgc cgcctgcgac gccgtcgctt gcacgttgcc cgccatcacg
     5221 aggccgcgca cggccacgag cggcaccgcg tggttctcga ccacgtcgac gacgaggccg
     5281 ttggcgagca cgctgtgcac cgtgcgggtc gcgaaaggca ccgcgggcgg tgccgccgtc
     5341 gggatcggcg ggcgcgcgac gacccgggcc gaagcggtct tcggcgccgt cgccgcggcc
     5401 gcgggccggg tggcggcgtc tgccgcagcc ggcgcactcg cgctgcgcac gttggcagcc
     5461 ggcacgaacc aaccgacggt cgcgcgatcg ggcacgagat acgtcgccgc gacgcgccgc
     5521 acgtcgtcgg cactgacggc cttgatgcgg tccacgtagg tcaggaacca cttccagtcg
     5581 gccgacgcga ccgcttcgcc cagcgccgac gcgacgaggt aagggccgtc gcgcaagcgc
     5641 gccaccgata cctcgatctg ctgctgcgcg cgcttgagct cggcatcggt gatgcccttc
     5701 tcggcgagcg cggccagcgc atccttcagc gcggcctcga cctcggcgtt ggtcttgccc
     5761 ggcgcgcacg tcgcgccgac gagcagcggg aacggatcgt gcaaagcgtc gttctcggcg
     5821 tacacggacg tggccagccc gcgctcgacg agcgcttggt agagccgggc gttgacgccg
     5881 tcgccgagga ccgaggcgag cacctcgaag gcgaagaagt ccggatgcga tgcgcccggc
     5941 cgcaggtacg cgagggccac gagcgcggtg ttgcccggcc gcttcacgac cacgcgacgt
     6001 tcgccttcc
//
LOCUS       DASVHM010000620         4608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_838213, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000620 DASVHM010000000
VERSION     DASVHM010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4608
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_838213"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..519)
                     /locus_tag="VF308_11565"
     CDS             complement(<1..519)
                     /locus_tag="VF308_11565"
                     /inference="COORDINATES: protein motif:HMM:NF028471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5118 domain-containing protein"
                     /protein_id="HEX7437341.1"
                     /translation="MPTFRFVPVRALALLVATGAVLTGCTTFQTINTPGPVGAAGPAA
                     SGPVAAPGPGGAASGLRPPGAPPVAVAPGGLRPFAEVIKEARRSDGLLTVWQKDDKVW
                     LELKPDDFNRLFFLSPKLKTGIGERNFYGGSMLFGDSGVVAFRRIHNQIQMVWLNVNY
                     AANAGSPEALSIE"
     gene            complement(632..2296)
                     /gene="ettA"
                     /locus_tag="VF308_11570"
     CDS             complement(632..2296)
                     /gene="ettA"
                     /locus_tag="VF308_11570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0045900 - negative regulation of
                     translational elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HEX7437342.1"
                     /translation="MAQYVFTMNRVGKIVPPKRQILKNISLSFFPGAKIGVLGVNGSG
                     KSTLLRIMAGIDTDIEGEATPMPNLKIGYLPQEPVMNPDQTVREAVEEGIGGALAAKK
                     RLDEVYAEYGEPDADFDKLAAEQAELEALIAAAGSENTDLQLEIAADALRLAPWDAVI
                     GKLSGGEKRRVALCRMLLSRPDMLLLDEPTNHLDAESVDWLEQFLARFPGTVVAITHD
                     RYFLDNAAEWILELDRGSGIPYKGNYSTWLEQKEQRLEQEQKTEDARTKAMKKELEWV
                     RQNPKGRQAKSKARLARFEELSDVEYQKRNETNEIFIPVAERLGHEVIEFVNVSKSFG
                     DRLLIDDLSFKVPAGAIVGIIGPNGAGKSTLFRMIAGKEKPDSGIVKIGPTAKMAFVE
                     QSREELENDKTVWQDVSGGLDNLVVGKFVMPSRAYLGRFNFKGNDQQKLVGNLSGGER
                     GRLHLAKTLIAGANVLMLDEPSNDLDVETLRALEDALLEFAGSIMVISHDRWFLDRIA
                     THILAAEGDSKWTFFDGNYQEYEADKKKRLGEEGAKPKRLRFRPMH"
     gene            complement(2373..4133)
                     /locus_tag="VF308_11575"
     CDS             complement(2373..4133)
                     /locus_tag="VF308_11575"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX7437343.1"
                     /translation="MSQTDIRQRLAAILAADVVGYSRLMNCDECGTMAALDSARAVFR
                     ASIDSHQGRVIDMAGDSVLAIFETASGAVGSALAIQRELADRAADVAEDCRMRFRIGI
                     HLGDVMEKADGSIYGDGVNIAARLESLAEPGGVTVSDAVQCAIRKRMTASFDDLGEQR
                     VKNIAEPVRAYRVREGVGADAMPQASAPPPGRERVDKPSIAVLPFNNMSGDAEQEFFA
                     DGITENIITELSRFRDLFVISRNSSFKYKGKAVEVQKFARELGVQYVVEGSVRKAGKR
                     VRITVQLIDAETDRHVWAERYDRDLEDIFAIQDEVTTAIVATLPGRVEAAARDRAART
                     TTENMAAYECVLTGKVLHHRSNREDNARAQRLLDRAIQLDPGYAHAHAWKACVLGQTW
                     VYGWCEDRSATENMIVEELRTALALDDNDSDVHRILAAVNLAQDRHDQCVYHQRRALT
                     LNPNDDLVVVQEGEILTWLGQAEEGIEWIKKAMRLNPYHPERFRNHLGRAYFVARRYG
                     EAVDALKCTTLREPAQRALLAACCARLGDAAAAATHRGEVLAQLPGFAIEEHLATLHY
                     KQPGDREHHRQGLLEAGFRL"
     gene            4405..>4608
                     /locus_tag="VF308_11580"
     CDS             4405..>4608
                     /locus_tag="VF308_11580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX7437344.1"
                     /translation="MSFDTLGLAEPLLRAVHEQGYTVPTPIQAQAIPAVLSGGDVMGG
                     AQTGTGKTAGFTLPILQRLARYAS"
BASE COUNT          689 a         1533 c         1554 g          832 t
ORIGIN      
        1 ttcgatcgaa agagcttcgg gcgagccggc gttggcggcg tagttaacgt tgagccagac
       61 catctggatc tggttgtgga tgcggcgaaa ggcgacgacg ccgctgtcgc cgaagagcat
      121 cgagccgccg tagaagttgc gctcgccgat gccggtcttc aacttcggcg agaggaagaa
      181 caggcggttg aaatcatcgg gcttgagctc gagccagacc ttgtcgtcct tctgccagac
      241 cgtgaggagg ccgtcgctgc gccgcgcctc cttgatgacc tcggcgaacg gcctgaggcc
      301 gcccggcgcg accgcgaccg gcggcgcccc cggcggccgc aggcccgatg ccgcgccgcc
      361 cgggccgggc gcggccacgg gtcccgaggc ggcggggccg gcggcgccga caggccccgg
      421 cgtgttgatg gtctggaacg tcgtgcagcc ggtcagcacg gcgcctgtgg cgacgagcag
      481 ggcgagcgcc cggaccggta cgaagcggaa ggtgggcatg cgggagatcc tcggcgagac
      541 aggcgagagg gtcgttcgat ggtaaagcgg acgcggagtt cgcgaaacgg gcgtaattcg
      601 catcagggcc tgtcgttggc aggcgctcgg ctcaatgcat ggggcgaaac cgcaaccgct
      661 tcggcttggc gccctcctcg ccgaggcgct tcttcttgtc ggcttcgtac tcctgatagt
      721 tgccgtcgaa gaaggtccac ttcgagtcgc cctcggcggc gaggatgtgg gtggcgatgc
      781 ggtcgaggaa ccagcggtcg tggctgatca ccatgatcga gccggcgaac tcgaggaggg
      841 catcctcgag cgcgcgcagc gtctcgacgt cgaggtcgtt cgacggctcg tcgagcatca
      901 gcacgttggc gccggcgatc agcgtcttgg ccaggtgcag ccgcccgcgc tcgccgcccg
      961 aaaggttgcc gacgagcttc tgctggtcgt tgcccttgaa gttgaagcgg ccgaggtagg
     1021 cgcgcgacgg catcacgaac ttgccgacga cgaggttgtc gaggccgccc gagacgtcct
     1081 gccagaccgt cttgtcgttc tcgagctcct cgcggctctg ctcgacgaac gccatcttcg
     1141 cggtcgggcc gatcttgacg atgccgctgt cgggcttttc cttgccggcg atcatgcgaa
     1201 agagcgtcga cttgccggcg ccgttcggac cgatgatgcc gacgatcgcg ccggccggca
     1261 ccttgaagct gaggtcgtcg atgaggagcc gatcgccgaa gctcttgctg acgttgacga
     1321 actcgatgac ctcgtggcca aggcgctcgg cgaccgggat gaagatctcg ttggtctcgt
     1381 tgcgcttctg gtactcgacg tcggagagct cctcgaagcg cgccagccgc gccttgctct
     1441 tggcttggcg gcccttgggg ttctggcgca cccactcgag ctccttcttc atcgccttgg
     1501 tgcgcgcgtc ctcggtcttc tgctcctgct cgagccgctg ctccttctgc tcgagccagg
     1561 tcgagtagtt gcccttgtac ggaattcccg agccgcggtc gagctcgagg atccactcgg
     1621 cggcgttgtc gaggaagtag cgatcgtggg tgatcgcgac gacggtgccc gggaagcggg
     1681 cgaggaactg ctcgagccag tcgaccgact cggcgtcgag gtggttggtc ggctcgtcga
     1741 ggaggagcat gtcgggccgc gacagcagca tgcggcagag cgcgacgcgg cgcttctcgc
     1801 cgcccgagag cttgccgatc accgcgtccc agggcgcgag gcgcaacgca tcggcggcga
     1861 tctcgagctg caggtcggtg ttctcgctgc cggccgcggc gatcagcgct tcgagctcgg
     1921 cctgctcggc ggcgagcttg tcgaagtcgg catcgggttc gccgtattcc gcgtacacct
     1981 cgtcgaggcg cttcttcgcc gcgagcgcgc cgccaatgcc ctcctcgacc gcctcgcgca
     2041 cggtctggtc cgggttcatc accggctcct gcggcaggta gccgatcttc aggttcggca
     2101 tcggcgtggc ttcgccttcg atgtcggtgt cgatgccggc catgattcgc agcagcgtgc
     2161 tcttgcccga gccattgacg ccgagcacgc cgatcttggc gccgggaaag aacgagagcg
     2221 aaatgttctt gaggatctgg cgcttgggcg gaacgatctt gcccacgcgg ttcatcgtga
     2281 agacgtactg agccatggtt ttgccgtgaa atgggagggg cccgcggaaa cgctcgcgca
     2341 ggtcaaccgg gtattgtcgc cggtccgcga attcagagtc ggaagcctgc ctcgagaagg
     2401 ccctgccggt ggtgctcgcg gtcgcccggt tgcttgtagt gcagcgtcgc cagatgctcc
     2461 tcgatggcaa agcccggcag ctgtgccagc acctcgccgc ggtgagtcgc cgccgccgcg
     2521 gcgtcgccga gccgggcgca gcaggctgcc agcagggcac gctgcgccgg ctcgcgcagg
     2581 gtggtgcact tgagggcgtc gaccgcttct ccgtagcggc gcgcgacgaa gtaggcgcga
     2641 ccgaggtgat tccggaaccg ctccgggtgg tacggattga ggcgcatcgc cttcttgatc
     2701 cactcgatgc cctcttccgc ctgcccgagc caggtcagga tctcaccctc ctgcacgacc
     2761 acgaggtcgt cgttcggatt tagggtcagc gcgcggcgct ggtggtagac gcactgatcg
     2821 tggcgatcct gtgccaggtt cacggccgcg aggatccggt gcacgtcgga gtcgttgtcg
     2881 tcgagcgcca gcgccgtgcg cagctcctcg acgatcatgt tctcggtcgc gctgcggtcc
     2941 tcgcaccagc cgtagaccca ggtctggccc aggacgcagg ccttccaggc gtgcgcatgc
     3001 gcatagcccg ggtcgagctg gatggcgcga tcgagcaggc gctgcgcccg ggcgttgtct
     3061 tcgcggttgc tgcggtggtg cagaaccttg ccggtcagca cgcattcgta ggccgccatg
     3121 ttctcggtcg tggtccgcgc cgcacggtcg cgtgcggcgg cctcgacacg cccgggcagc
     3181 gtcgcgacga tcgcggtcgt gacctcgtcc tggatcgcga agatgtcctc caggtcgcgg
     3241 tcgtagcgct cggcccagac gtggcgatcg gtctcggcgt cgatcagctg gacggtgatg
     3301 cgcacccgct tgccggcctt gcgaacgctg ccctcgacca cgtactgaac gccgagttcg
     3361 cgcgcgaact tctggacctc caccgccttg cccttgtact tgaacgaaga gttgcgcgag
     3421 atgacgaaga gatcgcgaaa gcgcgacagc tcggtgatga tgttctcggt gatgccgtcg
     3481 gcgaagaact cctgttcggc atcgccgctc atgttgttga agggcagcac cgcgatcgac
     3541 ggcttgtcga cgcgctcgcg gcccggcggc ggcgccgagg cctgcggcat cgcgtccgcg
     3601 cccaccccct cgcgcacccg atacgcgcgc accggctccg cgatgttctt caccctctgc
     3661 tcgcccaaat cgtcgaagct cgccgtcatg cgctttctga tcgcgcattg aacggcgtcg
     3721 gaaaccgtga caccacccgg ttcggcaagg ctttcgaggc gcgcggcgat gttgacgccg
     3781 tcgccgtaga tcgacccgtc ggctttctcc atcacgtcgc cgaggtgaat gccgatgcga
     3841 aaccgcatgc ggcagtcctc ggcgacatcg gccgcgcgat ccgcgagttc acgctggatc
     3901 gccagggccg aaccgaccgc gccgctcgcg gtttcaaaga tcgccagcac cgagtctccg
     3961 gccatgtcga tgacgcgacc ctggtgcgaa tcgatcgacg ccctgaacac ggcgcgggcg
     4021 ctgtcgagcg cggccatggt gccgcactcg tcgcagttca ttaggcgcga gtaccccacc
     4081 acatcggccg ccaaaatggc ggccagccgc tgccggatgt cggtctggct caaatccgcc
     4141 tcccgaagag agtgcgccca gtgcggatgg taattcctat gcacgtcgcg tgtggatgcg
     4201 cctcgctgca acggaacaac cccacgaaag agacgaaacc gcacctgcct cggtcgtgga
     4261 aaatcgcact ggtcttacaa tgcgcactgc ggcagctcag ctccagtcac tgctgccgca
     4321 gtcgattccg accctctccc ccgtctgcct cccgactggc gctcgtttac ccgggcgaca
     4381 ggccgatctt ctctttggaa tcccatgtct ttcgacactc tcggccttgc cgagcccctg
     4441 ctgcgcgccg ttcacgaaca gggctatacc gttcccactc cgatccaggc gcaggccatt
     4501 cctgcggtgc tctccggcgg cgacgtgatg ggcggcgccc agaccggcac cggcaagacc
     4561 gccggcttca ccctgcccat cctgcagcgc cttgcccgtt atgccagc
//
LOCUS       DASVHM010000621         1837 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_984499, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000621 DASVHM010000000
VERSION     DASVHM010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_984499"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..1000)
                     /locus_tag="VF308_11585"
     CDS             complement(155..1000)
                     /locus_tag="VF308_11585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011796675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF429 domain-containing protein"
                     /protein_id="HEX7437345.1"
                     /translation="MNLASNPIRRVAGIDFTSQPTARKPVTVALGGSDGRVVTLERIE
                     SHASFSSLSQWLRTPGPWVAAFDLPFGLPRDLVETLGWPTEWLALMRHYARLSREEIR
                     VTFAAFCAARPVGAKFAHRACELPAGSSPSMKWVNPPVAYMLHAGVSLLLEAGLHLPH
                     LHPGDKTRVALEGYPGLLARELIGRRSYKSDTKSKQTAARERARQDLIEALEQGRSRL
                     GLRLAVDSTQRAELLAEGSADRLDAVLCLLQAAWAVGRSNHGLPDDIDPLEGWIITAP
                     RVSRP"
     gene            1100..>1837
                     /locus_tag="VF308_11590"
     CDS             1100..>1837
                     /locus_tag="VF308_11590"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEX7437346.1"
                     /translation="MNPILVDVMRGNALESAHRGAIAVLDADGAVLAAVGDILRPIFP
                     RSAVKVLQALPLVDSGAADQLGLTDEELAIACASHNGEGVHAQVALRMLEKAGLDATA
                     LECGIHWPYLEEASRALAAQGREPSELNNNCSGKHAGFLCLACALSAGANVRQYAHGY
                     VALEHPVMRAVTAALQAATSYDLKTAPRGTDGCSIPTFAIPLHNLALAFARVGTGAGL
                     RTGHARAARRLRQAAAKFPFMVAGTGRF"
BASE COUNT          285 a          637 c          651 g          264 t
ORIGIN      
        1 aacgcggcca tcaaccgggc gctcgcggtg ccggaattgc gcgagcgctt cgccaagctc
       61 ggcctcgagc cgaccggtgg cacaccggcc gacctgagcg cacgcatggc gcaggacacg
      121 gcgcgctggg cccccgtggt gaaggcttcg gggttcaggg ccgactgaca cgcggcgcgg
      181 tgatgatcca gccttcgagc ggatcgatgt cgtcaggcaa gccgtggttc gatcggccca
      241 cggcccaggc ggcctgcagc aggcagagca cggcatcaag acggtcggcg ctgccctcgg
      301 caagcagctc ggcgcgctgg gtcgaatcga cggcgaggcg caagccgagg cggctgcggc
      361 cctgctcgag cgcttcgatc aggtcctggc gcgcacgctc gcgcgcggcc gtctgcttcg
      421 acttcgtgtc gctcttgtac gagcgccggc cgatcagttc gcgcgcgagc aagcccgggt
      481 agccttcgag cgccacgcgg gtcttgtcgc cggggtgcaa gtgcggcagg tgcagaccgg
      541 cctcgagcag cagcgataca ccggcgtgca gcatgtaggc gaccggcgga ttgacccatt
      601 tcatcgacgg cgacgagcct gcgggcagtt cgcaggcgcg atgcgcgaat ttggcgccga
      661 cgggccgtgc ggcacagaat gccgcgaagg tgacgcggat ctcctcgcgg gagagccgcg
      721 cgtagtggcg catcagcgcg agccactcgg tcggccagcc gagcgtctcg accagatcgc
      781 gcggcagtcc gaacgggaga tcgaaggccg cgacccacgg cccgggtgtg cgcagccatt
      841 gggaaaggct cgagaagctc gcatgcgact cgatccgttc cagcgtcacg acccgtccgt
      901 cgctgccacc gagcgccacc gtcaccggct ttctcgctgt cggctgactc gtgaaatcga
      961 tgccggcgac acggcggatg ggattggaag cgaggttcat gcgcagcctg caaggagcga
     1021 tccaaggaac gtgccgaccg attgtcggca agacgctcgg caggctacag tccggcctat
     1081 cgcccgacac ggaacgacga tgaacccgat tctggttgac gtgatgcgcg gcaacgcgct
     1141 cgagtcggcg catcgcggtg cgatcgcggt gctcgatgcc gacggcgcgg tgctcgccgc
     1201 ggtgggcgac attctccggc cgatctttcc gcgctccgcc gtgaaggtgc tgcaggcgct
     1261 gccactggtc gacagcggcg ccgccgacca gctcggcctc accgacgagg aactcgcgat
     1321 cgcctgcgcc tcgcacaacg gcgaaggcgt gcatgcccag gtcgcgttgc gcatgctcga
     1381 gaaggccggg ctcgacgcga cggccctcga gtgcggcatc cactggccgt acctcgagga
     1441 agcgtcgcgt gcgctcgctg cgcaggggcg cgagccgagc gaactgaaca acaactgttc
     1501 gggcaagcac gccgggttcc tctgcctggc gtgcgcgctt tcggccggcg ccaacgtgcg
     1561 ccagtacgcg cacggctatg tcgcgctcga gcacccggtg atgcgcgcgg tgacggccgc
     1621 gttgcaggcg gcgaccagct acgacctgaa aaccgcgccg cgcggcaccg acggctgctc
     1681 gattccgacc ttcgccattc cgctgcacaa cctcgcactc gcgttcgccc gcgtcggcac
     1741 cggcgccggg ctgcgcaccg gtcatgcgcg cgcggcgcgg cgcctgcgcc aggcggccgc
     1801 gaagttccct ttcatggtcg ccggcaccgg acgcttc
//
LOCUS       DASVHM010000622         1772 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_984827, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000622 DASVHM010000000
VERSION     DASVHM010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_984827"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..463
                     /locus_tag="VF308_11595"
     CDS             <1..463
                     /locus_tag="VF308_11595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009514971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEX7437347.1"
                     /translation="MLPKHSKLVPARRTNLSIAQAAALPLILPTGAHGLRRRIAAEFE
                     RRSLTPHIVAEIDSLSLLMNCVYDGMGATIKPMAAIHLERDRGRQWRFIAISDAPMTR
                     RNYLYSLGPARLSTAAAVVRTELRETSRELVKSGVWAGVEMIAAPATPAIV"
     gene            481..>1772
                     /gene="tcuA"
                     /locus_tag="VF308_11600"
     CDS             481..>1772
                     /gene="tcuA"
                     /locus_tag="VF308_11600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006483295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent tricarballylate dehydrogenase
                     TcuA"
                     /protein_id="HEX7437348.1"
                     /translation="MVDVLVIGGGNAALCAALMAREAGASVLVLEASPKEWRGGNSQH
                     TRNLRCMHDAPQDVLVEAYTEEEYWQDLLKVTGGVTSEQLARLAIRASSSCRDWMRKH
                     GVHFQPPLSGALHVARTNAFFMGGGKALVNAYYRSAVALGVRIRYDAPVDAIELDASR
                     FVAARIGKERIEARSCVLAAGGFESNRQWLIEAWGTNERGERPAENFLIRGTRFNTGV
                     LLRFMIDAGADSIGDATQAHMVAIDARAPLYDGGICTRIDCVSLGVVVNRNGVRFYDE
                     GEDFWPKRYAIWGRLVAQQPGQIAYSIIDQKAIGRFMPPVFPGVRGQSLAELARALNL
                     PEATFVKTLESYNAACRVGTFDHTTLDDCATSGLVPAKTHWARTIDTPPFHGYAVRPG
                     VTFTYLGLKVNDKAAVHFGGRPSDNLFVAGEMMAGNVLG"
BASE COUNT          294 a          617 c          580 g          281 t
ORIGIN      
        1 catgctgccc aagcacagca agctcgtccc ggcacggcgc acgaacctca gcatcgcaca
       61 ggccgcggcg ctgccgctca tcctgccgac cggagcgcat ggcctgcggc gacgcatcgc
      121 cgccgagttc gagcgcagga gtcttacccc gcacatcgtc gccgaaatcg attcgctctc
      181 gctgctcatg aactgcgtct acgacgggat gggcgcgacg atcaagccga tggccgcgat
      241 ccatctcgag cgtgaccgcg gccgccaatg gcgtttcatc gcgatttccg acgcgccgat
      301 gacgcggcgc aactacctgt attcgctcgg tcccgcccgt ctttcgacgg cggcggcggt
      361 cgttcgaacc gaactccggg aaacctcgcg cgaactcgtc aagtccggcg tgtgggccgg
      421 cgtcgagatg atcgctgcgc cggccacccc cgccatcgtc tagcgccgga cgaaaaggca
      481 gtggtcgatg tcctggtaat cggaggcggg aatgccgccc tgtgtgcggc gctgatggcg
      541 cgcgaagccg gcgcgtcggt gctcgtgctc gaggcgtctc cgaaggaatg gcgcggcggc
      601 aactcgcagc acacgcgcaa cctgcgctgc atgcacgacg cgccgcaaga cgtgctcgtc
      661 gaggcctaca ccgaagaaga gtactggcaa gacctgctca aggtgaccgg cggcgtcacg
      721 agcgagcagc tcgcccggct cgccatccgc gcttcttcga gctgccggga ctggatgagg
      781 aaacacggcg tccacttcca gccgccgctt tccggcgcgc tgcacgtcgc gcgcacgaac
      841 gccttcttca tgggcggcgg caaggcactc gtcaatgcct actaccgcag cgccgtggcg
      901 ctcggcgtgc ggattcgcta tgacgcgccg gtcgatgcca tcgagctgga cgccagccgc
      961 ttcgtggcgg cgcggatcgg caaggagcgg atcgaggcgc gcagctgtgt cctcgccgcc
     1021 ggcggcttcg aatccaatcg gcaatggttg atcgaggcct ggggcaccaa cgagcgcggc
     1081 gagcggccgg cggagaactt cctcatccgc gggacccgct tcaataccgg cgtgttgctc
     1141 cgcttcatga tcgacgccgg cgccgattcg ataggcgacg cgacacaggc ccacatggtc
     1201 gcgatcgacg cacgcgcgcc gctgtacgac ggcggcatct gcacgcgcat cgactgcgtt
     1261 tcgctcggcg tcgtcgtcaa ccgcaacggc gtgcgcttct acgacgaagg cgaagatttc
     1321 tggccgaagc gctatgcaat ctggggccgc ctcgtggcgc aacagccggg ccagatcgcc
     1381 tattcgatca tcgaccagaa ggcgatcggc cgcttcatgc cgccggtctt tccgggcgtg
     1441 cgcggccagt cgctcgcgga gctggcccgc gccttgaacc tgcccgaggc gactttcgtc
     1501 aagacgctcg aaagctacaa cgccgcctgc cgcgtcggca ccttcgatca cacgacgctc
     1561 gacgactgcg cgacctcggg gctggttccg gcgaagacgc actgggcgcg cacgatcgac
     1621 acgccgccgt tccacggcta cgcggtgcga cccggcgtca cgttcaccta cctgggtctg
     1681 aaggtgaacg acaaggcggc cgtgcatttc ggtggccgcc cgagcgacaa ccttttcgtg
     1741 gccggcgaaa tgatggccgg caacgtcctc gg
//
LOCUS       DASVHM010000623         3243 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_984945, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000623 DASVHM010000000
VERSION     DASVHM010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3243
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_984945"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..412
                     /locus_tag="VF308_11605"
     CDS             <1..412
                     /locus_tag="VF308_11605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIA"
                     /protein_id="HEX7437349.1"
                     /translation="ASSLKAVAEHAYPDCAAQLVALDVLPNVPAEEVEAQARQILERL
                     AAPELLIFTDVFGATPCNIAQRLADGVRVKVVTGVNVPMLWRTLCYADESLDAVVARA
                     IAGATQGVMQVATSRPQNQTLKARGHDQNDRQDQ"
     gene            384..653
                     /locus_tag="VF308_11610"
     CDS             384..653
                     /locus_tag="VF308_11610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HEX7437350.1"
                     /translation="MIRTTAKINNKLGLHARASAKLSKLAGSFRSDVFMSRNGRRVNA
                     KSIMGVMMLAAGIGSEIEIEIEGEDEAAAMTALTTLIADRFGEGE"
     gene            745..2550
                     /gene="ptsP"
                     /locus_tag="VF308_11615"
     CDS             745..2550
                     /gene="ptsP"
                     /locus_tag="VF308_11615"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HEX7437351.1"
                     /translation="MSFQLFGLPVSRGIAIGRAVLVASSRLDVAHYYVAAKDVETEIE
                     RLRSARDAVARELAAMQRDLPIEAPAELSALLDVHLMLLHDDTLTGATKHWIRERHYN
                     AEWALSAQLEVLARQFDEMEDEYLRERKADLEQVVERLLGVLARGDDGASPLVSHVVT
                     PEQSGEDPLVLVAGDISPADMLRFKGSVFLGFVTDVGGKTSHTAIVARSMDIPAVVGA
                     REASRLIRQDDWVVIDGDAGVVIVDPSPAVIDEYRAVKRQRDLGRAGLARLRHLPAVT
                     LDGQRVELLANIEQPGDAGAALAAGAAGIGLFRSEFLFMNRDGELPGEDEQFEAYRTA
                     VEAMHGRPVTIRTVDIGADKALDRMSANELRHEHALNPALGLRAIRWSLSEPAMFRQQ
                     LRAILRAAAHGRVRILIPMVAHLSEVRHTIDALTRARQQLDDAGRAYGPVEVGAMVEV
                     PAAALMLPAVLRYFDFVSIGTNDLIQYTLAIDRADEAVAHLYNAWHPAVLQLVAQTVA
                     CANRLHKDVSVCGEMAGDPAFTELLLGMGLRSFSMHPSQIVTIKERILATDASRWAAA
                     IERVLGADDPEHECQAVAAECVARGDALVATASAV"
     gene            2844..>3243
                     /locus_tag="VF308_11620"
     rRNA            2844..>3243
                     /locus_tag="VF308_11620"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          551 a         1103 c         1066 g          523 t
ORIGIN      
        1 cgcctcgtcg ctcaaggccg tcgccgaaca cgcctatccc gattgcgccg ctcagctcgt
       61 cgccctcgac gtccttccca acgttccggc cgaggaagtc gaggcgcagg cccggcagat
      121 cctggagcgc ctcgccgccc ccgagctgct catcttcacc gacgtcttcg gcgccacccc
      181 gtgcaacatc gcgcagcgcc tggctgacgg cgtgcgcgtc aaggtcgtca ccggcgtcaa
      241 cgtgccgatg ctctggcgca cgctctgcta cgccgacgaa tcgctcgacg ccgtcgtcgc
      301 ccgggcgatc gcgggggcga ctcagggcgt gatgcaggtc gccacgtcgc ggccccagaa
      361 ccagacgctg aaggcgcgcg gccatgatca gaacgaccgc caagatcaat aacaagctcg
      421 gcctgcacgc gcgggcctcg gccaagctga gcaagctcgc cgggagcttt cgctccgacg
      481 tcttcatgag ccgcaacggc cgccgcgtca acgccaagag catcatgggg gtgatgatgc
      541 tggcggccgg aatcggcagc gagatcgaga tcgagatcga gggggaagac gaagcggcgg
      601 cgatgacggc gttgaccacc ctcatcgccg acaggttcgg cgaaggcgag tagcgcttct
      661 ttccggccgg cgctggccgg ccatcgggtg ggccgcatcg tccttcgagc ggccccgtct
      721 cgcgccgctg ctagcatcga ttccatgagt tttcagctct tcggcctgcc cgtgtcgcga
      781 ggcatcgcga tcggccgcgc cgtgctggtc gcatcgagcc ggctcgacgt cgcccactac
      841 tacgtcgccg ccaaagacgt cgagaccgag atcgagcgtc tgcgcagcgc gcgcgacgcg
      901 gtcgcgcgcg agctcgccgc gatgcagcgc gatctgccga tcgaggcgcc cgccgagctc
      961 tcggccttgc tcgacgtgca cctcatgctg ctccacgacg acaccctgac cggtgccacc
     1021 aagcactgga tccgcgagcg tcactacaac gccgagtggg cgctttcggc gcagctcgag
     1081 gtgctggcgc gccagttcga cgagatggag gacgagtacc tgcgcgagag aaaggccgac
     1141 ctcgagcagg tcgtcgagcg actcctcggc gtcctcgccc gcggcgacga cggcgcctcg
     1201 ccgctggtga gccacgtggt cacgcccgag cagagcggcg aggatccgct cgtcctcgtc
     1261 gccggcgaca tctcgcccgc cgacatgctg cgcttcaagg gcagcgtctt cctcggtttc
     1321 gtcaccgacg tcggcggcaa gacctcgcac accgcgatcg tcgcgcgcag catggacatc
     1381 cccgcggtcg tcggcgcacg cgaggcgagc cggctgatcc gccaggacga ctgggtcgtg
     1441 atcgacggcg atgccggggt cgtcatcgtc gatccctcgc cggcggtgat cgacgagtac
     1501 cgcgcggtca agcgacagcg cgatctcggt cgcgccggcc tggcgcgtct gcgccacctg
     1561 ccggcggtga cgctcgacgg ccagcgcgtc gagcttctcg caaacatcga gcagcccggc
     1621 gatgccggcg cggcgctcgc cgccggggcc gccggcatcg gtttgttccg cagcgagttc
     1681 ctgttcatga accgcgatgg cgagctgccc ggcgaggacg agcagttcga ggcctaccgc
     1741 acggcggtcg aggccatgca tggccggccg gtgacgatcc gcaccgtcga catcggcgcc
     1801 gacaaggcgc tcgaccggat gtcggccaac gagcttcgcc acgagcacgc gctcaacccg
     1861 gcgctcggcc tgcgtgcgat ccgctggagc ctgtcggagc cggcgatgtt tcggcagcaa
     1921 ctccgcgcga tcctgcgcgc cgctgcacac ggccgcgtcc gcatcctgat cccgatggtg
     1981 gcgcacctga gcgaggtgcg ccacacgatc gacgcgctga cgcgcgcgcg tcagcagctc
     2041 gacgatgccg gtcgcgccta cgggccggtc gaggtcggcg cgatggtcga ggtgcccgcg
     2101 gccgcgctga tgctgccggc ggtcctgcgc tacttcgact tcgtctcgat cggcaccaac
     2161 gacctcatcc agtacaccct cgccatcgat cgcgccgacg aagccgtggc ccatctctac
     2221 aacgcgtggc accccgccgt tctgcagttg gtggcgcaga cggtcgcctg cgccaatcgt
     2281 ctccacaagg acgtcagcgt ctgcggcgag atggcgggcg atcccgcctt caccgagctc
     2341 ctgctcggca tggggctgcg cagtttctcg atgcacccct cgcagatcgt gacgatcaag
     2401 gagcgcatcc tcgccaccga tgcgagccga tgggccgcgg cgatcgagcg cgtgctcggc
     2461 gccgacgatc cggaacacga gtgccaggcc gtcgcagcgg aatgcgtcgc tcggggcgat
     2521 gcgcttgtcg ccactgcctc ggcggtgtag acttacagac tcgctgcaag gggtgcgcga
     2581 agctcttctt ggccccctcg ctctgcagtc cagccggccc tacgggttga cgggcctctg
     2641 caaaacgtgc gataatcgta gtcttcgctg attgctgctt tagcagcttt ttcagccgcc
     2701 gcaaggcccg ctctttaaaa actgacagcc gataagtgtg ggcgttcgag gccgagtgcc
     2761 ttggtcgaaa gaccgaggtc tcatggacct taaacgctca tgaagtgaag ttcacttcaa
     2821 ttcattgagt aaacatcaag atcgaactga agagtttgat cctggctcag attgaacgct
     2881 ggcggcatgc cttacacatg caagtcgaac ggcagcacgg gagcaatcct ggtggcgagt
     2941 ggcgaacggg tgagtaatac atcggaacgt gcccagtagt gggggataac ccggcgaaag
     3001 ccggactaat accgcatacg acctacgggt gaaagcaggg gatcgcaaga ccttgcgcta
     3061 ttggagcggc cgatgtcaga ttagcttgtt ggcggggtaa aagcccacca aggcgacgat
     3121 ctgtagctgg tctgagagga cgaccagcca cactgggact gagacacggc ccagactcct
     3181 acgggaggca gcagtgggga attttggaca atgggcgcaa gcctgatcca gccatgccgc
     3241 gtg
//
LOCUS       DASVHM010000624         3927 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_477188, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000624 DASVHM010000000
VERSION     DASVHM010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3927
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477188"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1823
                     /gene="lon"
                     /locus_tag="VF308_11625"
     CDS             <1..1823
                     /gene="lon"
                     /locus_tag="VF308_11625"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017876318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEX7437352.1"
                     /translation="QALLETIATQERVRNLLQILSRRIEVLRLSKEIGERTKEQLDDR
                     QRKFLLREQLKTIQQELGENGGSDEEVARLEETIAKAGMPADIEAHARKELRRLQNMS
                     DASGEYSMLRTYLEWMVELPWATPAETPIDLQAARRTLEADHFGLEKVKQRIVEFLAV
                     RKLNPQGRAPILCFVGPPGVGKTSLGQSIARALQRPFVRVSLGGVHDEAEIRGHRRTY
                     IGALPGNIVQGLRKAGARDCVMMLDEVDKLTASAHGDPSAALLEVLDPEQNGTFRDNY
                     LGVPFDLSRVVFIATANVIDNVPPPVRDRMEVIDLPGYTQEEKLQIAQTYLVRRQREA
                     NGLREDQCELTVEALKAIVADYTREAGVRQLEREIGRALRHAAMKVAEGSTEKMSIDA
                     PDLDAILGPVKFEREVALRSSVTGVATGLAWTPVGGDILFIEATRVAGSGKLSLTGQL
                     GDVMKESAQAAFTLVKSRAAGLGIPLAMFEGIDLHLHIPAGAIPKDGPSAGVAMFIAL
                     ASLFTDRPVRHDVAMTGEISLRGLVLPVGGIKEKVLAAQRAGLHVVLLPARNLKDLRD
                     VPEGARATMEFIALDTVDDAIRGALAGPGARSAPPDFRLV"
     gene            1846..2046
                     /locus_tag="VF308_11630"
     CDS             1846..2046
                     /locus_tag="VF308_11630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437353.1"
                     /translation="MPWTPERYPVAMRRLPPLVRLKAIAIANALLDEGNDEGRSIRIG
                     IAKAKEWALHHGGELAVRQRRM"
     gene            2071..2733
                     /locus_tag="VF308_11635"
     CDS             2071..2733
                     /locus_tag="VF308_11635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009911333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEX7437354.1"
                     /translation="MNAEFKDRQEAGRQLAAAVVRLGPNEDCVVLALPRGGVPVAVEV
                     ARALHAPLDLLIVRKIGAPGEPELAVAAIAEGDPPTVVVDDRTSRLTGADPAYIEREA
                     KAQRDEIERRRQAYRRGLARPSVAGKTVVIVDDGIATGTTMRAAVQALRGLRPARLVL
                     AVPVAAADAMAELSSLVDDVVCLAQPAFFGSVGTYYDDFRQVDDDEVIALLDAARTRH
                     EA"
     gene            2730..>3927
                     /locus_tag="VF308_11640"
     CDS             2730..>3927
                     /locus_tag="VF308_11640"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEX7437355.1"
                     /translation="MSALLTDLYQITMLQAYLEEGMAAPAVFELFVRKLPPQRNFLVA
                     AGLEQVLQFLETLAFSKVELAWLRSQGGFSSKLLDHLRTLRFEGDVDAMPEGTVFFAD
                     EPLIRVTAPLPQAQLVESRLLNLAHFETLIASKAARMVLAAEGRRLVDFGMRRAHGAE
                     AALLAARAAYLAGFDATATTEAGRRFGIPVSGTMAHSFVQAHASERAAFEAFARARPH
                     RPTLLLDTYDTEAAAAKLIDLAPELARDGIAIGGVRIDSGDLAAHAKAVRGMLDAAGL
                     QGVTIFASGNLDEHRIAALIAAAPIDGFGVGTALDTSSDAPAIDAVYKLQHYAGVARR
                     KRSEGKATWPGVKQVVRRFDGAGFIGGDRVQLDAEPRDGEALLRPCMRGGRRVGAAPT
                     LEESRAH"
BASE COUNT          635 a         1364 c         1370 g          558 t
ORIGIN      
        1 agcaggcact gctcgagacc atcgcgacgc aggaacgcgt gcgcaatctg ctgcagatcc
       61 tctcgcgccg catcgaggtg ctgcgcctgt cgaaggagat cggcgagcgc acgaaggagc
      121 agctcgacga ccgccagcgc aaattcctgc tgcgcgagca gttgaagacc atccaacagg
      181 agctcggcga aaacggcggc agcgacgagg aggtcgcgcg cctggaagaa acgattgcca
      241 aggccggcat gccggccgac atcgaggccc atgcgcgcaa ggagttgcgg cggctgcaga
      301 acatgtcgga cgcgtcgggc gagtactcga tgctacgcac ctacctcgag tggatggtcg
      361 aactgccctg ggcgacgccg gccgagacgc cgatcgacct gcaggccgcg cgccggacac
      421 tggaagccga tcacttcggc ctcgaaaagg tgaagcagcg catcgtcgaa ttcctcgccg
      481 tgcgcaaact gaacccgcag ggccgcgcgc cgatcctgtg cttcgtcgga ccgcccggcg
      541 tcggcaagac ctcgctcggc cagagcatcg cgcgggcgct gcagcggccg ttcgtgcgcg
      601 tgtcgctcgg cggcgtgcac gacgaggccg agatccgcgg ccaccgccgc acctacatcg
      661 gcgcgctgcc cggcaacatc gtgcaaggcc tgcgcaaggc cggcgcgcgc gactgcgtga
      721 tgatgctcga cgaggtcgac aagctgaccg cgagcgccca cggcgacccg tcggccgcgc
      781 tgctcgaggt gctcgacccg gagcagaacg gcaccttccg cgacaactac ctcggggtgc
      841 ctttcgacct cagccgcgtc gtcttcatcg ccaccgcgaa cgtgatcgac aacgtgccgc
      901 cgccggtgcg cgatcgcatg gaagtgatcg acctgcccgg ctacacgcag gaagaaaagc
      961 tgcagatcgc gcagacctat ctcgtgcgcc ggcagcgcga ggccaacggc ctgcgcgaag
     1021 accagtgcga gctgaccgtc gaggcgctga aagccatcgt cgccgactac acgcgcgaag
     1081 ccggcgtgcg ccagctcgag cgcgagatcg gccgcgcgtt gcgccatgcc gcgatgaagg
     1141 tggccgaagg ctcgaccgag aagatgtcca tcgacgcgcc cgatctggac gcgatcctcg
     1201 ggccggtgaa gttcgagcgc gaggtcgcgc tgcgcagcag cgtcaccggc gtggccaccg
     1261 gcctcgcctg gacgccggtg ggcggcgaca tcctcttcat cgaggccacg cgcgtggccg
     1321 gcagcggcaa gctgagcctt accggccagt tgggcgatgt gatgaaggaa agcgcgcagg
     1381 ccgcgttcac gctcgtcaag tcgcgagccg ccggtctcgg cattccgctt gcgatgttcg
     1441 aaggcatcga tcttcatctg cacattccgg cgggggcgat cccgaaggac ggcccgagcg
     1501 cgggtgtggc gatgttcatc gcgctggcat cgctattcac cgaccgaccg gtgcgccacg
     1561 atgtcgcgat gaccggcgag atcagcttgc gcggcctggt cctgccggtg ggcggcatca
     1621 aggaaaaagt gcttgccgcg caacgtgccg gcctgcatgt cgtgctcctg ccggcgcgca
     1681 acctgaaaga cctgcgcgac gtgcccgaag gcgcccgggc gacgatggag ttcatcgcgc
     1741 tcgacacggt ggacgacgcc attcgaggcg ccctggccgg accgggcgcg cgctccgcgc
     1801 cgcccgattt caggctggtc tgagagccag cgccgatcgc acgccatgcc ctggacgccc
     1861 gagcgctacc cggtggccat gcgcaggctg ccaccgctgg tgcggctgaa ggcgatcgcg
     1921 atcgccaacg ccttgctcga cgagggcaac gacgaagggc ggtcgattcg catcggcatc
     1981 gcgaaggcga aggaatgggc gttgcatcac gggggtgagc ttgcggtccg tcagcgccgc
     2041 atgtgaccgc tgctcgaaag gagcttcaca ttgaacgccg agttcaagga tcgccaggag
     2101 gccgggcggc agctcgcggc ggcagtcgtt cgcctcggtc cgaatgagga ctgcgtggtg
     2161 ctcgctcttc cgcgtggcgg cgtaccggtg gccgtcgagg tggcgcgcgc cctgcacgca
     2221 ccgcttgatc tgctgatcgt gcgcaagatc ggcgcgccgg gcgagccgga gctggcggtg
     2281 gccgccatcg cggagggcga cccgccgacg gtggtcgtcg acgaccggac atcgcgcctg
     2341 accggcgccg accccgctta catcgagcgc gaggcgaagg cccagcgcga cgagatcgaa
     2401 cggcgccgtc aggcgtaccg tcgcggcctg gcaaggccca gcgtcgccgg caagacggtc
     2461 gtcatcgtcg acgacggcat cgccaccggc accacgatgc gtgccgcggt gcaggccctt
     2521 cgcggcctgc ggccggcgcg gctggtgctc gcggtgcccg tcgccgcggc tgacgcgatg
     2581 gccgagctgt cgtcgctggt cgacgacgtg gtctgcctgg cgcagccggc tttcttcggg
     2641 tcggttggta cgtactacga cgactttcgg caggtcgacg atgacgaagt gatcgcgctg
     2701 ctcgacgctg cccgcactcg tcacgaagca tgagcgccct gctgaccgat ctgtaccaga
     2761 tcacgatgct gcaggcctac ctcgaagagg gcatggcagc gcctgccgtg ttcgagctgt
     2821 tcgttcgcaa gctgccgccg cagcgcaact tcctcgtggc cgcgggcctg gaacaggtgc
     2881 tgcagttcct cgagacgctc gcattctcca aggtcgaact cgcctggttg cgcagccagg
     2941 gcgggttctc gtcgaagctg ctggaccacc tgaggacctt gcgcttcgaa ggcgacgtcg
     3001 acgcgatgcc cgaaggcacc gtgttcttcg ccgacgaacc cctcatccgc gtcacggccc
     3061 cgctgcccca ggcccagctc gtggaaagtc gcctgctcaa tcttgcgcac ttcgagacct
     3121 tgatcgcctc gaaggcggcg cgcatggtgc tcgctgccga gggacgccgg ctggtggact
     3181 tcggcatgcg ccgcgcccac ggcgcggagg cggcgctgct cgctgcacgc gcggcctacc
     3241 tggcgggttt cgacgccacc gccacgaccg aggccggccg acgcttcggc attcccgtct
     3301 ccggaacaat ggcgcattcg ttcgtgcagg cgcacgccag cgaacgggca gccttcgaag
     3361 ccttcgcccg tgcgcggccg caccgaccga cgctgctgct cgacacctac gacaccgaag
     3421 cggcagccgc caagctcatc gacctggcac ccgagctggc gcgcgacggc atcgcgatcg
     3481 gcggcgtgcg catcgacagc ggcgacctgg ccgcgcacgc caaggcggtg cgcggcatgc
     3541 tcgacgcggc agggttgcag ggcgtgacga tcttcgccag cggcaacctc gacgagcacc
     3601 ggatcgcggc gctgatcgcc gccgcaccga tcgacggctt cggcgtcggc acggcgctcg
     3661 acacctcgag cgacgcgccg gcgatcgacg ccgtctacaa gctgcaacac tacgccggcg
     3721 tggcgcgccg caagcgctcc gagggcaagg ccacctggcc gggcgtgaag caggtggtcc
     3781 gccgcttcga tggcgccggc ttcatcggcg gcgacagggt ccaactcgac gccgagccgc
     3841 gcgacggcga agcgctgctg cgcccgtgca tgcgcggcgg aaggcgggtc ggcgcggcgc
     3901 cgacgctcga ggaatcgcgc gcccacc
//
LOCUS       DASVHM010000625         2042 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_117531, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000625 DASVHM010000000
VERSION     DASVHM010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117531"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..>2042
                     /locus_tag="VF308_11645"
     CDS             73..>2042
                     /locus_tag="VF308_11645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX7437356.1"
                     /translation="MNSAIVRAACPHDCPDTCAMLVTVENGRAVKVQGDPDHPTTHGA
                     LCTKVSRYAERTHHPERVLHPLRRVGPKGTGRFARVSWDEALDDIAARLGAIAARAPE
                     AIVPYSYAGTMGLVQGESMAARFFNRIGASLLDRTICSSAGGEALAATYGAKIGMHVE
                     HYAESRLILIWGSNSIASNLHFWTYAQAAKRAGAKLVCIDPRKTETADKCHQHIALLP
                     GTDGALALGLMHELIGNDWLDHDYIERHTEGWPKLRARALEWPAERVAETCGITADEV
                     RGLARDYGSARPAAIRLNYGMQRVRGGGNAVRLIAILPCLVGAWRHRAGGLLLSSSGW
                     FRHARDDAALQRPDLLAGRRPRTINMSTIGDDLLRESGEELADGSRFGPQIEALVVYN
                     SNPVAVAPQSPKVVQGFAREDLFTVVLEHFMTDTADLADYVLPATTQLEHLDVHTSYG
                     HTYALINEPAIAPLGEAKPNTEIFRALAARMDCTDPCFADSDEALARAAFRPDVVDFD
                     RLRERGWVKLALPDAPLAEGHFPTPSGRCLIDAPLLGVPDHVANYEAAASAPDLAARY
                     PLAMISPPARNFLNSSFVNVKSLRDIEGEPLLEIHAADALERSLASGQTVRVFNDRGS
                     IECKAVVGTRARPGVVNGLGVWWKKLGSDGRNV"
BASE COUNT          318 a          729 c          694 g          301 t
ORIGIN      
        1 ggcatggcgc tgtccgcccc gccatcggtg cggcgccggg gcgaagtgtt gggtctgtgc
       61 gatagttcac tgatgaactc cgcgatcgtc cgcgccgcgt gtccgcacga ctgcccagac
      121 acctgcgcga tgctcgtcac ggtcgagaac ggccgggccg tgaaggtgca gggcgatccc
      181 gaccatccga cgacgcacgg cgccctgtgc accaaggttt cgcgctacgc cgagcggacc
      241 catcatcccg aacgggtgct gcatccgctc aggcgcgtcg ggccgaaagg cacgggacgg
      301 ttcgctcggg tgagctggga cgaggccctc gacgacatcg cggccaggct cggggccatc
      361 gccgcgcgcg cccccgaggc catcgtgccg tacagctatg ccggcacgat gggcctggtg
      421 cagggcgaaa gcatggcggc gcgcttcttc aaccggatcg gcgcttcgct gctcgaccgc
      481 acgatctgct cttcggccgg cggcgaggcg ctcgccgcga cctacggcgc gaagatcggc
      541 atgcatgtcg aacactacgc cgagagccgg ctgatcctca tctggggcag caattcgatc
      601 gcctcgaacc tgcatttctg gacctacgcg caggccgcca agcgcgccgg cgcgaagctc
      661 gtctgcatcg atcctcgcaa gaccgagacg gccgacaagt gccatcagca catcgcgctg
      721 ctgcccggca cggacggggc gctcgcactc ggcctgatgc acgagctgat cggcaacgac
      781 tggctcgacc acgactacat cgagcgccac accgaaggct ggccgaagct gcgcgcgcgc
      841 gcgctcgagt ggccggccga acgcgtggcc gagacctgcg gcatcacggc cgatgaagtg
      901 cgcggcctgg cgcgcgacta cggcagcgcc aggcccgcgg cgatccgcct caactacggc
      961 atgcagcgcg tgcgtggcgg cggcaacgcg gtgcgcctga tcgcgatcct gccctgtctc
     1021 gtcggcgcct ggcggcatcg cgccggcggc ctgctgctgt cgagctcggg ctggttccgc
     1081 catgcccgcg acgacgcggc gctgcaacgc ccggacctgc tcgccgggcg gcggccgcga
     1141 acgatcaaca tgagcacgat cggcgacgac ctgctgcgcg agagcggcga ggagctcgcc
     1201 gacggctcgc gtttcggtcc gcagatcgag gcgctggtcg tctacaacag caacccggtc
     1261 gcggtcgcgc cgcagtcgcc gaaggtcgtg cagggcttcg cgcgtgagga cctgttcacg
     1321 gtcgtgctcg agcatttcat gaccgatacg gccgatctgg ccgactatgt gctgccggcg
     1381 acgacccagc tcgagcacct cgacgtccac accagctacg gccacaccta tgcgctgatc
     1441 aacgagccgg ccatcgcgcc gctcggcgaa gccaagccca ataccgagat cttccgcgcg
     1501 ctcgccgcgc gcatggattg caccgacccg tgctttgccg acagcgacga ggcgctcgcg
     1561 cgtgccgcgt tccggcccga tgtggtcgac ttcgaccggc tgcgcgagcg gggctgggtc
     1621 aagctcgcgc tgcccgatgc gccgctcgcc gaagggcact tcccgacccc gagcggtcgc
     1681 tgcctgatcg acgcgccctt gctcggcgtg cccgaccatg tcgcgaacta cgaggccgcg
     1741 gcgagtgccc ccgatctggc ggcgcgctat ccgctcgcga tgatctcgcc gccggcgcgc
     1801 aactttctca attcgagctt cgtcaacgtg aagagcctgc gcgacatcga aggcgagccg
     1861 ctgctcgaaa tccatgctgc cgatgcgctt gagcgcagtc tcgcatcggg gcagacggtt
     1921 cgggtcttca acgaccgcgg cagcatcgaa tgcaaggccg tcgtcggcac gcgtgcccgg
     1981 cccggcgtcg tcaacggcct gggcgtatgg tggaagaagc tcggcagcga cgggcgcaac
     2041 gt
//
LOCUS       DASVHM010000626         1633 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_985129, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000626 DASVHM010000000
VERSION     DASVHM010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1633
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_985129"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..284
                     /locus_tag="VF308_11650"
     CDS             <1..284
                     /locus_tag="VF308_11650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HEX7437357.1"
                     /translation="GLYEPSHGSAPDIAGKDVANPLATILSVAMMLRFSLNQAEAAAR
                     IEQAVRAVLAAGLRTADIWAEGTKKVGTRAMGDAVVAALAGKPAITTKH"
     gene            367..1491
                     /gene="asd"
                     /locus_tag="VF308_11655"
     CDS             367..1491
                     /gene="asd"
                     /locus_tag="VF308_11655"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEX7437358.1"
                     /translation="MELTGLVGWRGMVGSVLLERMAAEGDFDLIEPLFFSTSDKGGRA
                     PAHAKSEARLQDAYDLEALKRCRIIITAQGGDYTKDVYPRLRAAGWDGYWIDAAKTLR
                     MQEDAVIILDPVNRAVIDAALARGVRNYIGGNCTVSCMLMGIGALFKADLVEWMTCTT
                     YQAASGGGAQHMRELLTQYGALHAEVRDLLADPKSAILEIDRRVTERQRAMTDAETEH
                     FGVPLGGSLIPWIDVDRGDGTSLEEWKGSAETNKILGRGAGAAPAVPIDSICVRVGAM
                     RCHSQSLTIKLKSDVPLADIEAMIAADNEWVQVVPNTRAASSHALTPVAVSGTMKIPV
                     GRLRKLAMGADYLGAFTIGDQLLWGAAEPLRRMLRILLER"
BASE COUNT          286 a          552 c          555 g          240 t
ORIGIN      
        1 agggcctgta cgagcccagc cacggcagcg caccggacat cgcgggcaag gacgtcgcca
       61 atccgctggc tacaattctc tccgtcgcca tgatgcttcg cttttccttg aaccaagccg
      121 aagccgccgc tcgcatcgag caggcggtgc gggccgtcct cgcggccggc ctgcgcacgg
      181 ccgatatctg ggcggagggt acgaagaagg tgggcacgcg ggcgatgggc gatgcggtgg
      241 tggccgcgct cgccggcaaa ccggcgatca ccaccaagca ctaacgcgcg cccgttcgtc
      301 tcgccctgcc cggccgaggc gccgggcgga gctcctcaga cgacaaggac ccacgggacg
      361 aacagcatgg aactcacggg attggtcggg tggcgcggca tggtcggctc ggtgctgctc
      421 gagcgcatgg ccgccgaagg cgacttcgac ctgatcgagc cgctcttctt cagcaccagc
      481 gacaagggcg gccgggcgcc ggcgcacgcg aagagcgagg cccgactgca ggacgcctac
      541 gacctcgagg cgctcaagcg ctgccgcatc atcatcacgg cgcagggcgg cgactacacc
      601 aaggacgtct acccgcgcct gcgcgccgcc ggctgggacg gctactggat cgacgccgcc
      661 aagacgctgc gcatgcagga agacgcggtc atcatcctcg acccggtgaa ccgggccgtc
      721 atcgacgcgg cgctggcgcg gggcgttcgc aactacatcg gcggcaattg cacggtgagc
      781 tgcatgctga tgggcatcgg cgccctcttc aaggccgacc tcgtcgagtg gatgacctgc
      841 acgacgtacc aggccgcgtc cggcggcggc gcccagcaca tgcgcgagct gctgacgcaa
      901 tacggggcgc tgcacgccga ggtgcgcgat ctcctcgccg acccgaagtc ggcgatcctc
      961 gagatcgatc ggcgcgtgac ggagcggcag cgggcgatga ccgacgccga gaccgagcac
     1021 ttcggcgtcc cgctcggcgg cagcctgatc ccgtggatcg acgtcgaccg cggcgatggc
     1081 accagcctcg aggaatggaa gggcagtgcc gaaaccaaca agatcctcgg ccgcggcgcc
     1141 ggcgccgcac ccgcggtgcc gatcgattcg atctgcgttc gcgtcggcgc gatgcgctgt
     1201 cacagccagt cgctgacgat caagctgaag tccgacgtcc ctcttgccga tatcgaggcc
     1261 atgatcgccg ccgacaacga atgggtgcag gtcgtgccga acacgcgcgc cgccagctcg
     1321 cacgcgctga cgccggtggc ggtgagcggg acgatgaaga tcccggtcgg tcggctgcgc
     1381 aagctcgcaa tgggggccga ctacctcggc gcattcacga tcggcgatca gctcttgtgg
     1441 ggggccgccg agccgcttcg gcgcatgctg cgaatcttgc tcgagcgatg aacacggccg
     1501 tcaagctctc ggccgcgttg tctgactgca acaacggcgt gaagaagact cggaaccggc
     1561 gcttgcgaga acgtcagcca aagcatgagc ttgtcaccgt atctcactga tgttatggtc
     1621 acttccgtct ttt
//
LOCUS       DASVHM010000627         2173 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_623124, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000627 DASVHM010000000
VERSION     DASVHM010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2173
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_623124"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..549)
                     /gene="rimO"
                     /locus_tag="VF308_11660"
     CDS             complement(<1..549)
                     /gene="rimO"
                     /locus_tag="VF308_11660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007866368.1"
                     /note="catalyzes the methylthiolation of an aspartic acid
                     residue of the S12 protein of the 30S ribosomal subunit;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HEX7437359.1"
                     /translation="MIEESTVTLAAPLAAPKIGFVSLGCPKALTDSELILTRLSAEGY
                     ATSKTFEGADLVIVNTCGFIDDAVKESLDAIGEALAENGKVIVTGCLGAKAGQGGGNL
                     VRQMHPSVLAVTGPHATDEVMAAVHAHVPKPHDPFVDLVPAARPQVGIKLTPKHYAYL
                     KISEGCNHRCTFCIIPSLRGDLV"
     gene            complement(596..1180)
                     /gene="phaR"
                     /locus_tag="VF308_11665"
     CDS             complement(596..1180)
                     /gene="phaR"
                     /locus_tag="VF308_11665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019562122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate synthesis repressor PhaR"
                     /protein_id="HEX7437360.1"
                     /translation="MAQTRRAGAPRPGTTGPGGPRILKKYPNRRLYDTKISSYITLAD
                     VKTMVLGGTDFEVRDAKTGEDLTRSILLQIILEEETGGVPIFSAPMLSQIIRFYGHAM
                     QGMMGSYLEKNLQTFTDIQARLAEQAKGLYEPQAQTPEMWAQFLSGQAPIVQKLMGSY
                     LEQSKNMFVQMQEQMAKQAGTLFPGLPGIVPPKR"
     gene            complement(1213..>2173)
                     /locus_tag="VF308_11670"
     CDS             complement(1213..>2173)
                     /locus_tag="VF308_11670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007878529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MaoC/PaaZ C-terminal domain-containing protein"
                     /protein_id="HEX7437361.1"
                     /translation="LCRNGADSRSVHDIEAFGPVSTLMPYDTTGGSIDEALALAALGK
                     GSLVATLVTRDPLVAAKAVPAAAAWHGRILVLDREAAAESTGHGSSLPQLKHGGPGRA
                     GGGEELGGIRAVHHYLQRAAVQGSPTMVAAVTGEYIRGAAVHESEVHPFRRHFEELAI
                     GDSLLTHRRTVGEADIVAFGGISGDYFYMHFDAIAAKESAFGQRIAHGYFVLSAAAGL
                     FVSPAPGPVLANYGLDTLRFVKPVAIGDTIRARITCKRKIDRNRKGAKGVGQGVVAWD
                     VEVTNQDGDVVASYDILTLVAKKGPLASGAAGKTPSGPSGGPF"
BASE COUNT          318 a          706 c          768 g          381 t
ORIGIN      
        1 gacgaggtcg ccgcgcaggc tcgggatgat gcagaaggtg cagcggtggt tgcagccctc
       61 gctgatcttg aggtaggcgt agtgcttcgg cgtgagcttg atgccgacct gcggacgcgc
      121 cgcggggacg aggtcgacga agggatcgtg gggcttgggc acgtgtgcgt gcacggccgc
      181 catgacctcg tcggtcgcgt gcgggccggt gacggcgagc acgctcggat gcatctgtcg
      241 caccaggttg ccgccgccct ggccggcctt cgcgccgagg cagcccgtca cgatgacctt
      301 gccgttttcg gcgagcgctt cgccgatcgc gtcgaggctt tccttcacgg catcgtcgat
      361 gaagccgcag gtgttgacga tgacgaggtc ggccccttcg aaggtcttcg acgtggcata
      421 gccttcggcg gaaaggcgcg tcaggatcag ttcggaatcg gtcagcgcct tcgggcagcc
      481 gagcgagacg aacccgatct tcggcgcggc caacggggcg gcgagcgtga cagtcgattc
      541 ttcgatcatc cggcgatttt cgccgatgcc gcgcaagagc gcgggtcggg ccggttcaac
      601 gcttgggcgg gacgatgccg ggcaggccgg gaaagagcgt tcccgcctgc ttggccatct
      661 gctcctgcat ctgcacgaac atgttcttcg actgctcgag gtaactgccc atgagcttct
      721 gcacgatcgg cgcctggccg ctcaggaact gggcccacat ctccggcgtc tgcgcctgcg
      781 gttcgtagag gcccttggcc tgctcggcca gtcgggcctg gatgtcggtg aaggtctgca
      841 ggttcttctc gaggtacgag cccatcatgc cctgcatcgc atggccgtag aaacggatga
      901 tctgcgagag catcggcgcc gagaagatcg gcacgccgcc ggtctcttcc tcgaggatga
      961 tctgcagcag gatgctgcgg gtcaggtcct cgccggtctt cgcgtcgcgc acctcgaagt
     1021 ccgtgccgcc caggaccatg gtcttcacgt cggccagcgt gatgtagctg ctgatcttcg
     1081 tgtcgtagag acggcgattc ggatacttct tgaggatgcg tgggccaccc ggcccggtcg
     1141 tgccgggcct gggtgcgccg gcgcggcggg tctgagccat tcagcacctc catgtgcgat
     1201 tgcacaatga ttctagaagg gccctccgct aggccccgaa ggggttttcc cggctgcgcc
     1261 tgaagcgagc ggacccttct tggccacgag ggtcaggatg tcgtagctcg cgacgacgtc
     1321 gccgtcctgg ttcgtgacct cgacgtccca ggcgacgacg ccctgcccga ctcccttcgc
     1381 acccttccgg ttgcggtcga tcttgcgctt gcaggtgatg cgcgcgcgga tcgtgtcgcc
     1441 gatcgcgacc ggcttgacga agcgcagcgt gtcgaggccg tagttcgcga ggaccggccc
     1501 gggggccggc gaaacgaaaa ggcctgccgc cgcggagagc acgaaatagc cgtgcgcgat
     1561 gcgttggccg aaggccgact ccttcgccgc gatcgcgtcg aagtgcatgt agaaatagtc
     1621 gcccgagatg ccgccgaagg cgacgatgtc ggcctcgccg acggtgcgcc ggtgcgtcag
     1681 cagcgagtcg ccgatcgcga gttcctcgaa atgcctgcga aacggatgga cctcgctctc
     1741 gtgcaccgcg gcgccgcgaa tgtattcgcc ggtgaccgcc gcgaccatcg tcggcgaacc
     1801 ctggaccgcg gcgcgctgca ggtagtgatg cacggcgcgg attccgccga gctcttcgcc
     1861 gccgccggcg cgcccggggc cgccgtgctt caactgcggc agcgacgagc cgtgtccggt
     1921 cgattcggcg gcggcttcgc gatcgagcac gaggatgcgc ccgtgccagg ccgccgccgc
     1981 cggcaccgcc ttcgcggcca ccagcgggtc gcgcgtcacg agcgtggcga cgaggctacc
     2041 cttgccgagc gcggcgagcg cgagcgcctc gtcgatggac ccgccggtcg tgtcgtaggg
     2101 catcagggtg ctgaccgggc cgaacgcctc gatgtcgtgg accgagcggc tgtcggcgcc
     2161 gttgcggcac aac
//
LOCUS       DASVHM010000628         1861 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_331735, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000628 DASVHM010000000
VERSION     DASVHM010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331735"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1531)
                     /locus_tag="VF308_11675"
     CDS             complement(<1..1531)
                     /locus_tag="VF308_11675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437362.1"
                     /translation="MDYSTGKLAFIFVVAVALAVAGAWLLARRYRVAMRALMSAPLVV
                     ASSAARAAPMPSIALAPAVAVTEADNRRTAWCLSGVAVVLSGLIATSSGALQLVTMFP
                     GDPFSVRRAAMLALVHLWPAIPALGVVWRWSRWRLAATLGFWFLLCLAVIVWGSIKPM
                     PLQVLGFLGLEIGPPLLVMAGLCLGHATRAIAPWLLPPVVGFVWASVAGIDLLGLMIR
                     DRPSWLLVLPSWLGADALMALFVVLPWVLAWWPLKWFARGLARAYARKVLAELSVLFT
                     AVWAISLFYQALGAASDLGAGGAVMLLPLGWIFLALLLSRWLRRSAGRPPTLLVLRVY
                     RRDAEVQQLFDSVIERWRLTGNTVLIAGTDLADRTLDADKIFTFLQGRLGSLFIREPA
                     DVAVRLAGFDFERDDDGRFRINECLCHDTTWQDALAALVQRSDLVLMDLRGFQAPNAG
                     CAHELAVLANAARIRRVVVLADAATDRAAAHGAGAGAPADRFVWVDASRVGRRLTRVV
                     LQ"
     gene            complement(1560..>1861)
                     /locus_tag="VF308_11680"
     CDS             complement(1560..>1861)
                     /locus_tag="VF308_11680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEX7437363.1"
                     /translation="AAHAEGPVSAQASGAQAEPSAAPGFWIQLGAFRQRDGAAAFQRR
                     IAEELDWLSPLLAVFSDAALFRLQAGPYPSRDEARGAAESIRAALQLVPVIVERR"
BASE COUNT          343 a          665 c          665 g          188 t
ORIGIN      
        1 gctgcagcac gacgcgcgtc aggcggcggc cgacccgcga tgcgtcgacc cacacgaagc
       61 ggtccgccgg tgcgcccgcg ccggcgccat gcgcggccgc gcgatccgtc gcggcatcgg
      121 cgaggacgac gacgcgccgg atccgcgccg cgttggcgag caccgccagc tcgtgcgcgc
      181 aaccggcgtt gggggcctga aaaccgcgca gatccatcag cacgagatcg ctgcgttgga
      241 ccagcgccgc caacgcgtcc tgccaggtgg tgtcgtggca aaggcactcg ttgatgcgaa
      301 agcgaccatc gtcgtcgcgt tcgaagtcga acccggccag gcgcaccgcg acgtcggccg
      361 gttcgcggat gaagagactg ccgaggcggc cctggaggaa ggtgaagatc ttgtcggcat
      421 cgagggtgcg atcggccagg tcggtgccgg cgatcagcac cgtgttgccg gtcaggcgcc
      481 agcgttcgat gacggagtcg aagagctgct gcacctcggc gtcgcgccga tagacgcgca
      541 gcacgagcag ggtcggcggc cggccagcgc tgcgccgcag ccagcggctc agcaacagcg
      601 ccaggaagat ccagccgagc ggcagcagca tgacggcgcc gccggccccc aggtcgctcg
      661 ccgccccgag cgcctgatag aagagcgaga tcgcccagac cgccgtgaac agcacgctga
      721 gctcggccag aaccttgcgc gcataggccc gcgccaggcc tcgcgcgaac catttcagcg
      781 gccaccaggc cagcacccag ggcagcacga cgaagagcgc catcagtgca tccgcgccga
      841 gccacgacgg cagcacgagc agccacgacg gccggtcccg aatcatcagg ccgagcagat
      901 cgatccccgc gacggaagcc cagacgaagc cgacgaccgg tggcagcagc cacggagcga
      961 tcgcgcgcgt ggcatggccg agacagaggc cggccatcac cagcagcggc gggccgatct
     1021 cgagccccag aaacccgagg acctgcaacg gcatcggttt gatcgacccc cacacgatca
     1081 ccgccaggca gagcaggaac cagaagccga gagtggcggc aagacgccag cgcgaccagc
     1141 gccagaccac accgagcgcg ggaatggcag gccacagatg cacgagggcc agcatcgcgg
     1201 cgcgcctgac cgaaaaagga tcgccgggaa acatcgtgac gagttgcagg gccccggagc
     1261 tcgtcgcgat cagccccgac aaaacgaccg cgaccccgct caggcaccac gcggtgcgtc
     1321 ggttgtccgc ctcggtcacc gcgacggccg gcgcgagcgc gatcgatggc atcggggctg
     1381 cgcgggcagc gctcgaagcg accaccagcg gcgcgctcat cagcgcccgc atcgcgacgc
     1441 gatagcggcg cgcgagcaac cacgcgccgg cgaccgcgag cgcgaccgca acgacgaaga
     1501 tgaaggcgag ctttccggtc gagtagtcca tgccggcgcg cgtcgaaggc gccccgcgtt
     1561 cagcgccgtt cgacgatgac cggcacgagc tggagcgcgg cgcgaatgct ttcggccgcg
     1621 ccccgggcct cgtcgcggct cggatatgga ccggcctgca ggcgaaacag cgccgcgtcg
     1681 ctgaagacgg cgagcagcgg cgacaaccag tcgagctcct cggcgatgcg gcgctggaag
     1741 gcggccgcgc cgtcgcgctg gcggaaggcg ccgagctgga tccagaagcc gggggcggcc
     1801 gagggctcgg cctgcgcgcc gcttgcctgc gcgctcacgg gcccttcggc gtgcgctgcc
     1861 g
//
LOCUS       DASVHM010000629         4923 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_406544, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000629 DASVHM010000000
VERSION     DASVHM010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4923
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406544"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(40..1890)
                     /locus_tag="VF308_11685"
     CDS             complement(40..1890)
                     /locus_tag="VF308_11685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437364.1"
                     /translation="MLKIEDLKVALDSNAGLVKAIDGLTLSIERGETFALVGESGCGK
                     SMTALALMRLLPDNGRVTQGRLDLGGEEIFGLPESRMRGIRGGRIGMIFQEPATSLNP
                     VMRVGDQIVEAIETHTKLRGAAARAKAIEWLGRVGIPEPERRIDEYPFRLSGGQKQRV
                     MIAMTLASEPDFLVADEPTTALDVTIQAQILELLKTLQREQGMGLLLITHDLAVVSGM
                     ADRVALMYAGQIIEVAPAAEFFRAPKHPYARLLLQALPDTTKRGETLAAIAGTVPPLS
                     QAFAGCRFTPRCDRAFDECPHTPPDLYDLGGRTVRCLLYRDGREPGPAPGQAMWAAPI
                     RVEDTRPIEVAARPLLEVTHLSVRFPIRGGILQRVRGTFTAVDDVSFSIPSGETLALV
                     GESGSGKTTAGKAIVQLLREQALIEGRALLNGQDLFTLGGDALREARRSIQIIFQDPF
                     ASLDPRMRVFDILEEGLQALRPDLDGAARRSNLERLVDQVGLRREALQRYPHEFSGGQ
                     RQRIAIARALAVEPKLIVCDEPTSALDVSVQAQILNLLRDLQAQVGVSYLFITHNIGV
                     VEYIADQVAVMQRGRIEELGPAAAVLRAPRSAYTRTLLAAVPRIEREPAP"
     gene            complement(1906..3384)
                     /locus_tag="VF308_11690"
     CDS             complement(1906..3384)
                     /locus_tag="VF308_11690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437365.1"
                     /translation="MVPKFVLLWTDAVLFVLVASLVWYVWHVRRNPNLRDTWGKVFAD
                     APSTCSALVIALFLGVTLLDSVHYRLALPPSATATAGSPVAYDTRTVSVLDGLLVELV
                     QSREASYSVPLATIGFTKETRDVGGRSARVFPRLVHGGAHLKDPQTEWLPDVSVRAAL
                     GTAAGLGLAALLVFGVGRGHARRERIGVGEALRRIARNQTRLPLRAALVTLALMLALC
                     GVAVALMFAYHLLGTDRTGNDVFYQALKSVRTAFVIGTLATLATLPFAVAFGVAAGYF
                     KGWVDEVIQYLYTTLSSVPNVLLIAACVLMVQVYIDKNPGLFATGAERADLRLFLLCL
                     ILGVTGWASLCRLLRAETMKLRELEYVQAAAAFGVSHWRIMVRHILPNVMHLVLITTV
                     LEFSGLILYEAVLSYVGVGVDPSMNSFGGMINLARNEMSRDPIVWWSFAAAFAFMVTL
                     VLAANLFADGVRTAFDPRSRAFRPRLLPPLAGAPVDATAPQS"
     gene            complement(3402..4385)
                     /locus_tag="VF308_11695"
     CDS             complement(3402..4385)
                     /locus_tag="VF308_11695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437366.1"
                     /translation="MLNYIIRRIGYGVLILLGVNLATFFLFFTVNTPDDMARLNIGGK
                     RVNAEQIAKWKAERGYDKPLYFNDKKEGTEKLTDTIFWDRSVSLFELDFGRADAESAG
                     DIGYQVRSRMMASLQLALPLFVLQVIASTAFALQLVLFRNTRIDFWGVVLCVLMLSIS
                     SLFYIIVGQFLFSRIFKLVPISGYAGGLDAVKFLVLPVLLALVARLGGEARLYRAMFL
                     EEVGKDYVRTARAKGLSERVVLFRHVFKNALIPIITSAGSYLPYLFLGSLVFESFFGI
                     PGLGAYVIDAITGQDFAIVRTMVFIGSLLYIVSYVIIDIAYTWADPRVRLS"
     gene            complement(4387..>4923)
                     /locus_tag="VF308_11700"
     CDS             complement(4387..>4923)
                     /locus_tag="VF308_11700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7437367.1"
                     /translation="ATDYNQFQDKMRKGTQQVFFWGWLADYPDAENFLFLLYGPNSKA
                     KADGENTANYDNPEYDRRYNMLRLMDDGPAKQKVIDEMVAILQQDAVWTFGWFPFASG
                     AYQPWLSNGKPGIMIRDMAKYYRIDPVLRTHKQAEWNRPAWWPPALIVLVLLVTAWGA
                     RRTFRRRERLNARGEVLA"
BASE COUNT          882 a         1597 c         1696 g          748 t
ORIGIN      
        1 tgggcggctc cccagccccg agcagccgcc gcgcccgcct cagggcgcgg gttcgcgctc
       61 gatccgggga accgcggcga gcaaggtgcg cgtataggcg gaccgcggcg cgcgaagcac
      121 cgcggcggcc gggccgagtt cctcgatgcg gccgcgctgc atcaccgcga cctgatcggc
      181 gatgtattcg acgacgccga tgttgtgcgt gatgaaaagg tacgagacac cgacctgcgc
      241 ctgcagatcg cgcaacaggt tcaggatctg tgcctgcacc gagacgtcga gcgccgaggt
      301 cggctcgtcg cagacgatga gcttgggctc gaccgcgagg gcgcgcgcga tcgcgatgcg
      361 ctggcgctgg ccaccggaga attcatgggg atagcgctgc agcgcctcgc gccgcaggcc
      421 gacctggtcg acgaggcgct cgaggttgct ccggcgcgcg gcgccgtcca gatcgggccg
      481 caacgcctga agcccctctt cgaggatgtc gaacacgcgc atgcgcgggt ccagggatgc
      541 gaaagggtcc tggaagatga tctggatcga gcgtcgcgcc tcgcgcaagg cgtcaccgcc
      601 cagcgtgaag agatcctgcc cgttcagaag cgcccgacct tcgatgaggg cctgttcgcg
      661 cagcaactgc acgatcgcct ttcccgcggt ggtcttgccc gatcccgact cgccgacgag
      721 ggcgagggtt tcgccgctcg ggatgctgaa cgacacgtcg tccacggcag tgaacgtgcc
      781 ccggacgcgc tgcaggatcc cgcccctgat cgggaagcgc acgctgaggt gcgtcacctc
      841 cagcaaaggc cgggccgcca cctcgatcgg tcgcgtgtct tcgacacgaa tcggcgcggc
      901 ccacatcgcc tgcccaggcg ccggtccggg ctcccgcccg tcacgataga gcaggcagcg
      961 caccgtgcgt ccccccaggt catacagatc gggcggcgtg tgcggacact cgtcgaaggc
     1021 ccggtcgcag cgcggtgtga acctgcaacc ggcgaatgcc tgggacaagg gcggcaccgt
     1081 gccggcgatt gcggcaagcg tttcgccgcg cttggtcgtg tcgggcagcg cctggagcag
     1141 gaggcgcgcg tacgggtgct tgggcgcgcg aaagaactcc gccgccgggg cgacctcgat
     1201 gatctgccct gcatacatca gcgccacccg atccgccatg cccgaaacga ccgccaggtc
     1261 gtgagtgatc agcaacaggc ccatgccctg ctcgcgctgc aaggtcttca gcaattcgag
     1321 gatctgcgcc tggatggtca cgtcgagcgc ggtggtgggc tcgtcggcga ccaggaaatc
     1381 gggttccgag gcaagagtca tcgcgatcat cacgcgctgc ttctggcccc cgctgaggcg
     1441 aaacggatat tcgtcgatgc ggcgctcggg ctcggggatg ccgacccgcc cgagccactc
     1501 gatcgccttg gcacgtgcgg cggcgccgcg cagcttggtg tgggtctcga tcgcctcgac
     1561 gatctggtcg ccgacccgca tcaccgggtt caggctggtg gccggctcct ggaagatcat
     1621 gccgatgcgg ccgccgcgga tgccgcgcat ccgcgattcg ggcaagccga atatttcctc
     1681 gccgccgagg tccagacgcc cctgcgtgac ccgcccgttg tcgggcagca gacgcatcag
     1741 cgcgagcgcc gtcatgctct tgccgcagcc cgattctccg acgagcgcga acgtttcgcc
     1801 gcgttcgatg gaaagcgtca ggccgtcgat cgccttgacc agcccggcgt tggagtcgag
     1861 cgcaaccttc aggtcttcga ttttcaacat cgtcgttagc gcgcctcagc tctgcggggc
     1921 ggtcgcatcg accggagcac ccgccagcgg cggcaggagg cgcggccgga aggcccgtga
     1981 gcgcggatcg aatgcggtgc gaacgccatc ggcgaagagg ttcgccgcca gcaccagcgt
     2041 gaccatgaac gcgaacgcgg cggcgaaact ccaccagacg atcgggtcgc gcgacatctc
     2101 gttgcgcgcg aggttgatca tgccgccgaa gctgttcatc gaaggatcga cgccaacccc
     2161 gacataggac aggaccgcct cgtacaggat cagccccgaa aactcgagca ccgtcgtgat
     2221 cagcacaagg tgcatcacgt tgggaaggat gtggcgcacc atgatgcgcc agtggctgac
     2281 gccgaacgcg gcggcggctt gcacgtattc gagctcgcgc agcttcatgg tctcggcgcg
     2341 caacaggcga cacaggctcg cccagccggt cacgccgagg atcaggcaca gcagaaagag
     2401 gcgcaggtcg gcacgctcgg cgccggtcgc gaaaagtccc gggttcttgt cgatgtacac
     2461 ctgcaccatc aacacgcagg cggcgatcag cagcacattg ggcaccgacg acaaggtcgt
     2521 gtagaggtac tggatcacct cgtcgaccca gcccttgaag tagccggccg ccacgccgaa
     2581 ggcgaccgcg aacggcaggg tcgcgagcgt ggccagcgtg ccgatcacga acgcggtccg
     2641 cacgctcttg agcgcctggt agaacacgtc gttgccggtg cgatcggtgc cgagcaggtg
     2701 gtaggcgaac atcagcgcga cggccacccc gcaaagcgcc agcatcagcg cgagcgtcac
     2761 cagtgcggcg cgcaggggca ggcgggtctg gttgcgcgcg atccggcgca gcgcctcgcc
     2821 gaccccgatg cgttcgcggc gggcgtgtcc gcgcccgacg ccgaagacga gaagagccgc
     2881 gaggccgagc ccggcggcgg ttccgagcgc ggcgcgcacc gacacatcgg gcagccactc
     2941 ggtctgcgga tccttcagat gcgcgccgcc gtggacaagg cgggggaaaa cgcgcgcgct
     3001 ccggccgccg acgtcgcgcg tttccttggt gaacccgatg gtcgcgagcg gcaccgaata
     3061 agaggcctcg cgcgactgca cgagctcgac caggagcccg tccagcaccg acaccgtgcg
     3121 ggtgtcgtag gcgaccgggg agccggccgt cgcggtggcc gagggcggca atgcgagacg
     3181 gtagtgcacg ctgtcgagca gagtgacgcc gagaaagagg gcgatgacga gcgccgaaca
     3241 ggtcgaaggc gcgtcggcga acaccttgcc ccaggtgtcg cgcaggttcg ggttgcggcg
     3301 cacatgccag acgtaccaga cgagcgaagc gaccagcacg aacaggaccg cgtcggtcca
     3361 gagcaggacg aatttgggaa ccacgcgccg gtcctcggat gtcagctcag ccggacccgg
     3421 gggtcggccc aggtataggc gatgtcgatg atcacgtagg agacgatgta cagcagcgag
     3481 ccgatgaaga ccatggtgcg cacgatcgcg aagtcctggc cggtgattgc gtcgatcacg
     3541 tacgcgccca agcccggaat gccgaagaag ctctcgaaga cgaggctgcc gagaaagagg
     3601 tagggcagat aggagccggc gctggtgatt atcgggatca gcgcgttctt gaagacatgc
     3661 ctgaagagca cgacccgctc cgacaggccc ttcgcgcgtg ccgtgcgcac gtagtccttg
     3721 ccgacctcct cgaggaacat cgcgcgatag aggcgcgctt cgccgccgag ccgtgcgacc
     3781 agcgccagca gcaccggcag gacgaggaac ttgaccgcgt ccaagcctcc ggcatagccc
     3841 gagatcggca ccagcttgaa gatccgcgag aacaggaact ggccgacgat gatgtagaaa
     3901 aggctcgaga tcgacagcat cagcacgcac agcaccacgc cccagaaatc gatgcgcgtg
     3961 ttgcggaaga gcacgagctg cagcgcgaac gcggtgctgg cgatgacctg caaaacgaag
     4021 agcggcagcg cgagttgcag gctcgccatc atccggctgc gcacctggta gccgatgtcg
     4081 cccgcgctct cggcgtcggc gcgcccgaag tcgagttcga agagcgagac cgagcggtcc
     4141 cagaagatcg tgtcggtcag tttttcggtg ccttccttct tgtcgttgaa gtagagcggc
     4201 ttgtcgtagc cgcgctcggc cttccacttc gcgatctgct cggcgttgac gcgcttgccg
     4261 ccgatgttga ggcgggccat gtcgtcgggc gtgttgacgg tgaagaagag aaagaaggtg
     4321 gccaggttca cgcccagcag aatcagcacc ccgtagccga ttctgcggat gatgtagttc
     4381 agcatgtcac gcgaggactt cgccgcgggc gttcaggcgt tcgcgccggc ggaacgtgcg
     4441 gcgcgcgccc cacgcggtca ccagcaagac gagcacgatc agcgccggcg gccaccacgc
     4501 cggccggttc cactcggcct gcttgtgcgt ccgcagcacg gggtcgatgc ggtagtactt
     4561 cgccatgtcg cggatcatga tgccgggctt gccgttcgag agccacggct ggtaggcgcc
     4621 ggatgcgaat ggaaaccagc cgaaggtcca gaccgcatcc tgctgcagga tcgcgaccat
     4681 ctcgtcgatg actttctgtt tcgcggggcc gtcgtccatc aggcgcagca tgttgtagcg
     4741 cctgtcgtat tcggggttgt cgtagttggc agtgttttcg ccatcggcct tggccttcga
     4801 gttcgggccg tagagcagga agaggaagtt ctcggcgtcg gggtagtcgg ccagccagcc
     4861 ccagaagaac acctgttggg tgccctttct catcttgtcc tggaactggt tgtagtcggt
     4921 cgc
//
LOCUS       DASVHM010000630         2658 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_985204, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000630 DASVHM010000000
VERSION     DASVHM010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2658
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_985204"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..313
                     /locus_tag="VF308_11705"
     CDS             <1..313
                     /locus_tag="VF308_11705"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019562015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEX7437368.1"
                     /translation="LTWIGFILLSVANVAMQLVEFVSKTVSHGMRLFGNMYAGELIFL
                     LLALLGGAFTLSVGGIVLALLHIGFGWVWAVFHILIITLQAFVFMMLTLVYIGQAHDS
                     H"
     gene            364..627
                     /gene="atpE"
                     /locus_tag="VF308_11710"
     CDS             364..627
                     /gene="atpE"
                     /locus_tag="VF308_11710"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEX7437369.1"
                     /translation="MELIGLVAVAAGLIIGLGALGACVGVGIMASKYLESAARQPELM
                     GVLQTKVFLLLGLIDASFIIGAGIALWYTTANPFLAQIANLPK"
     gene            691..1161
                     /locus_tag="VF308_11715"
     CDS             691..1161
                     /locus_tag="VF308_11715"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEX7437370.1"
                     /translation="MSITSTFWIQMIVFVILGLFTMKFIWPPITAALDERADKIREGL
                     SAADRAKAELATANKRIEEELSSARADAAQRLADAERLAQSMIEEAKSRASEEGTKIV
                     AAARAEAEQEATKARETLREQVAALAVRGAEQILRREVDARTHADLLGQLKAQL"
     gene            1177..1722
                     /locus_tag="VF308_11720"
     CDS             1177..1722
                     /locus_tag="VF308_11720"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEX7437371.1"
                     /translation="MAELATIARPYAEALLKASANGDAAVLAGEIRALADVAANAQMR
                     QFADNPKIDSKQVFDLLTGVARTPSGAPLSDAARNLLHTVIDNGRLAVLPEIAAQFQA
                     LVDARSGVSQATIESAFPIDAAQVADVKAVMERRFKRKLETSVVVVPELIGGVRVVVG
                     DEVLDTSIRARLEQMKAALTA"
     gene            1812..>2658
                     /locus_tag="VF308_11725"
     CDS             1812..>2658
                     /locus_tag="VF308_11725"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011808279.1"
                     /note="produces ATP from ADP in the presence of a proton
                     gradient across the membrane; the alpha chain is a
                     catalytic subunit; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEX7437372.1"
                     /translation="MQLNPAEISELIKSRIEGLAVSADIRNEGTVVSVTDGICRVHGL
                     SDAMQGEMLEFPAAPDGSATYGLALNLERDSVGAVILGEYEHISEGDTVKCTGRILEV
                     PIGPELKGRVVNALGAPIDGKGPVGAKMSAPIEKIAPGVIARQSVSQPMQTGLKSIDS
                     MVPIGRGQRELIIGDRQTGKSAVAIDAIINQKGQNMTCIYVAIGQKASSVKNVVRSLE
                     ASGAMEYTIVVAATAAESAAMQYVSAYSGCTMGEYFRDRGMDALIIYDDLTKQAWAYR
                     QVSLLL"
BASE COUNT          453 a          936 c          854 g          415 t
ORIGIN      
        1 gctcacctgg atcggcttca tcctgctgtc ggtcgccaac gtcgcgatgc agctcgtcga
       61 gttcgtgtcg aagacggtct cgcacggcat gcgactgttc ggcaacatgt acgcgggcga
      121 gctgatcttc ctgctgctgg ccctgctcgg cggcgctttc acgctgtcgg tcggcggcat
      181 cgtcctggcg ttgctgcata tcggcttcgg ctgggtctgg gccgtgttcc acatcctgat
      241 catcacgctg caggcgttcg tgttcatgat gctgacgctc gtctacatcg gccaggcgca
      301 cgattcgcac tgagcccttc gcttcctccc tctcactctc actacaactc tggagccaat
      361 accatggaac tcatcggtct cgtcgcagtc gccgccggcc tcatcatcgg cctcggcgcg
      421 ctcggcgcct gcgtcggcgt cggcatcatg gccagcaagt acctcgaatc ggcggcgcgc
      481 cagcccgagc tgatgggcgt cctgcaaacc aaggtcttcc tactgctcgg cctgatcgac
      541 gcgtcgttca tcatcggcgc gggcatcgcc ctctggtaca cgacggccaa cccgttcctg
      601 gcccagatcg ccaacctgcc gaagtaatcg agggccggtg gccggcaccg cgccggcgca
      661 tccttcccga ccacccagcg agcaagcacc gtgagcatta cctccacctt ctggatccag
      721 atgatcgtgt tcgtgatcct cggcctgttc acgatgaagt tcatctggcc gccgatcacc
      781 gccgcgctcg acgagcgcgc ggacaagatc cgcgagggcc tgtcggccgc cgacagggcc
      841 aaggccgagc tggcgacggc gaacaagcgc atcgaggaag agctgtcgtc ggcgcgtgcc
      901 gacgcggcgc agcgcctcgc cgacgccgag cgcctggcgc agtcgatgat cgaggaagcc
      961 aagtcgcgcg ccagcgagga aggcacgaag atcgtcgccg ccgcgcgcgc cgaagccgag
     1021 caggaagcga ccaaggcgcg cgagaccctg cgcgagcagg tcgccgcgct cgccgtccgc
     1081 ggcgccgagc agatcctgcg ccgcgaggtc gacgcacgca cgcacgccga tctcctcggc
     1141 cagctcaagg cgcagctttg aagggcctga gctgacatgg ccgagctcgc caccatcgcc
     1201 cgcccgtacg ccgaggcctt gctgaaggcg tcagccaacg gcgacgcggc cgtgctcgcc
     1261 ggagagatcc gcgcgctggc cgacgtcgcc gcgaacgcgc agatgcgcca gttcgccgac
     1321 aacccgaaga tcgactcgaa gcaggtgttc gatctgctca ccggggtcgc tcgcacgcct
     1381 tcgggcgcgc cgctgagcga cgcggccagg aacctgctgc acacggtgat cgacaacggc
     1441 aggctcgccg tgctgcccga aatcgcggcg cagttccagg ccctcgtcga cgcccgcagc
     1501 ggcgtctcgc aggcgacgat cgaaagcgcc ttcccgatcg acgcggcgca ggtcgccgac
     1561 gtcaaggcgg tgatggagcg tcgcttcaag cgcaagctcg agacgagcgt cgtcgtcgtc
     1621 cccgagctca tcggcggcgt tcgcgtcgtc gttggcgacg aggtgctcga cacctcgatc
     1681 cgcgcccgcc tcgaacagat gaaggcggcc ctgaccgcct gaccccgctg cgcgaaccgc
     1741 accggcgtcg aagcagagtt ttctcttgag tttcaaccag cctgcccgaa ctgcagagcg
     1801 aaagccctga catgcaactg aatcccgcag aaatttccga gctgatcaag agccgcatcg
     1861 aagggctcgc cgtctcggcc gacatccgca acgaaggcac cgtcgtctcg gtgaccgatg
     1921 gcatctgccg cgtccacggt ctctccgacg cgatgcaggg cgagatgctc gaattcccgg
     1981 ccgcgcccga cggctcggcg acctacggcc tggcgctcaa cctcgagcgc gactcggtcg
     2041 gcgccgtcat cctgggcgag tacgagcaca tctccgaagg cgacaccgtc aagtgcaccg
     2101 gccggatcct cgaggtgccg atcggccccg agctgaaggg ccgcgtcgtc aacgccctcg
     2161 gcgcgccgat cgacggcaag ggcccggtgg gcgcgaagat gtcggcgccg atcgagaaga
     2221 tcgcccccgg cgtgatcgcg cgccagagcg tcagccagcc gatgcagacc ggcctcaagt
     2281 cgatcgactc gatggtgccg atcggccgcg gccagcgcga gctgatcatc ggcgaccgcc
     2341 agaccggcaa gagcgcggtg gcgatcgacg cgatcatcaa ccagaagggt cagaacatga
     2401 cctgcatcta cgttgccatc ggccagaagg cgtcgtcggt gaagaacgtc gtgcgctcgc
     2461 tcgaggcgag cggggcgatg gagtacacga tcgtcgtcgc cgccaccgcg gccgaatcgg
     2521 cggcgatgca gtacgtctcg gcgtactcgg gctgcaccat gggcgagtac ttccgcgacc
     2581 gcggcatgga cgccctgatc atctacgacg atctgaccaa gcaggcctgg gcctatcgtc
     2641 aggtatcgct gctgctgc
//
LOCUS       DASVHM010000631         7764 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_839113, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000631 DASVHM010000000
VERSION     DASVHM010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7764
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_839113"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            192..974
                     /locus_tag="VF308_11730"
     CDS             192..974
                     /locus_tag="VF308_11730"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HEX7437373.1"
                     /translation="MAWTFACARSLSHPISASIVARTAGESRAQMVDPHERTPNTQVS
                     ARWKCLSVGGGRMRRRVIVAGFTGIAVLSMRPGARAQQAPRRIARVAILSPGASEARS
                     VLTAFRTRLCELGYVEGRDVALEFHFANGSERLAALAQAIVRDGPDLVLADGRLAAQA
                     MRAASRTIPIVAITGEPVTFGLAESLARPGGNVTGIATMSAELGAKQLELLREILPRA
                     RRIGVVDASISAVSYRAFEGRAARPSAMSTVSSCRRAHRWSD"
     gene            907..1260
                     /locus_tag="VF308_11735"
     CDS             907..1260
                     /locus_tag="VF308_11735"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HEX7437374.1"
                     /translation="MPHGPRRCRRYRRAAERTGGRIERNPGSAHQRQRQTGDLRRSRL
                     RRRRRPGLLRHVIDDAFRRSASLADRVLKGASPAETPFEQPTRVAFVVNLKTAKALRL
                     TIPQSVLLRADELIQ"
     gene            complement(1338..2483)
                     /locus_tag="VF308_11740"
     CDS             complement(1338..2483)
                     /locus_tag="VF308_11740"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEX7437375.1"
                     /translation="MKTSKTYRFETLAVHAGHGVDPATGAVVEPIHLSTTFERDADGT
                     YPHGYLYSRNHNPNRNGLEAALAALEGGTSGAAFGSGLAAVTAIFQGLQPGDHVIAPK
                     DIYHGTANVLKHLFAKWQVSATFVDMTHLDDVTRAVQANTRIVWIETPSNPLLRCVDI
                     SAVAAIAHRAGARAVADNTFASPALQRPLDLGCDMVMHATTKYLGGRSDVLGGAAITR
                     ADDEPFAQVRTAQLFGGAVPSPFDCWLIMRSLPTLAYRMQAHCANARKLATFLRNHPK
                     VSAVHYPGLEDNAFHALAKKQMSDFGGMLSFEVKGGKDAAMTVAAHVEVFTRATSLGG
                     VESLIEHRASIEGPASETPQGLLRMSVGLEHADDLIDDLAQALDRCA"
     gene            2782..3171
                     /locus_tag="VF308_11745"
     CDS             2782..3171
                     /locus_tag="VF308_11745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437376.1"
                     /translation="MIKRMVVLAASFMALAAVAQQDQRPDRQVIDVQVVNGRIVVPEE
                     VAETNEREGALVWRLVEPGYAFPENGIVVDSKGKHRCQVNPDNERRFRCAKLRHDRGE
                     RYKYVVNVIDTRSQQPLEPLDPYIQNN"
     gene            complement(3197..6091)
                     /locus_tag="VF308_11750"
     CDS             complement(3197..6091)
                     /locus_tag="VF308_11750"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7437377.1"
                     /translation="MDAPIALLLTDVVDSAALAARLGDAAMASLWSAHDRLARDLLRE
                     WRGREIDKSDGFLLMFAEAADALEYALAYHRALAGLEVPMRARAGLHVGLVSVRENSA
                     QDVTLGAKPLEVDGVSKPIAARVMSTALGGQTLVTAAALNALGTVSHRVLSHGHWRMQ
                     GLPAPLELFEVGEASAPFTPPPDAAKVYRVVRQGDLWLPARETRHSLPAERDAFVGRR
                     TSLLELARRFDSGGRLVSLLGIGGSGKTRLATRFGWGWLGDFPGGVWFCDLAPARSVE
                     GLVSAVAQGLDVPLDKDDPVVQLGHAIAGRGACLVILDNFEQVVRHAEATLGRWLERA
                     AQARFLVTSREVLGIAGEEALALAPMQAPDAQALFLRRAAAAKRAFHPTPEDQAAIAT
                     LVQLLDGLPLAIELAAARVRTLTPRALLARMSERFKLLASTGNRLDRQSTLRAAFDWS
                     WDLLTSAEKAALAQVSVFEGGFTLEAAEAVIDFSGLDNAPWTVDVVNSLVDKSFVRPL
                     DAERFDLLVSVQAYAAEHLQTEGRYVGSGPAALRAAHAQHGRWFAALGPRRAIEGACA
                     DLDNLVAACRRGVASGDTEAAAGVLDGAWAALSLHGPFKVGVDLAESVCAIPGLPARA
                     AAHSHAVLGSALHALGQRAKAGVHYQIALEHALAAGDKHCEAAVRVSLGELRAREGRI
                     DLARAELTRAVQLAREVGEPALECAALNGIGTLEFEHGRMAEAQIPYEAALRLARDVG
                     DRRWQGALLGNLGNLHSSLGRMDPARVHSEESLLIARELGDRKREGNTLCNLGMMHYV
                     QGRLDDAGSTSEAALVVARELGHAQLECIVLCNLGLVYEASGRGPQALARFDAALAVA
                     RQIGDRRAEGQILGYLGLAHARQKRSFDAARDCLANGQAILHEVSDQLSLGLLLCSRA
                     ECEWLAGMAQAARAAHEEAVALAVQAGAGLESELGVALARLDSMLGAGAP"
     gene            complement(6140..6838)
                     /locus_tag="VF308_11755"
     CDS             complement(6140..6838)
                     /locus_tag="VF308_11755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEX7437378.1"
                     /translation="MTAAAGNGVRAGKLAEQVYDTLKAQIHDFQLVAGDRFSEADLGQ
                     RLGMSRTPVREALFRLRNEGFLGVESKLGWYVLPIDFGRLEQLYDLRVVLELASVARL
                     CARAEATPELEALKSVWLVPPGERLGDARAVGGHDEQFHATLVRAAGNGEMARVHWDV
                     TERIRIIRRLDFTRADRIEATYVEHAKILRAVMQKKPDQAQLLLKTHIEQSKAEVRKI
                     TLHTLQAARERAGG"
     gene            complement(6835..7218)
                     /gene="hpxZ"
                     /locus_tag="VF308_11760"
     CDS             complement(6835..7218)
                     /gene="hpxZ"
                     /locus_tag="VF308_11760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009515701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxalurate catabolism protein HpxZ"
                     /protein_id="HEX7437379.1"
                     /translation="MTVQINLPDVLNEVSAVFARYEDALVHNRTDVLDELFWHSDAVV
                     RYGAGENLVGIEAIRAFRAARPSAGLARTLGHTVITTFGRDFATAMTEFQREGNPRIG
                     RQSQTWVRFAEGWRVVAAHVSLLAP"
     gene            complement(7215..>7764)
                     /locus_tag="VF308_11765"
     CDS             complement(7215..>7764)
                     /locus_tag="VF308_11765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006296379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HEX7437380.1"
                     /translation="TALDARHTVTLPEVARARAAAFLITNAEGGALHLADLRTRAADF
                     EPLSRDRFLAGALLPAAWVVQAQRVRRWFALRAAELLREVDLLIAPATPCEAPEVGTE
                     WITINGKRLPARPSMGLLTQPISFIGLPVCSVPVWGCHPTLPIGVQLIAAPWREDLVL
                     RVAQHLQNAGIVQAPVAALPTP"
BASE COUNT         1219 a         2649 c         2685 g         1211 t
ORIGIN      
        1 atcgcaagcc cgaagaatcg tccgactcgt ttgggtcgac atatgcccgt cgcgtttgtg
       61 atccgccatc ctgcccgcgg ccgttcaccc cgagcagccc ggtagccgaa ggtcgtcaac
      121 gcgaattgtc ggccacacca caggggcgag ctcttcctcc attgctcgaa gcgctcttca
      181 aggcttaaat cgtggcatgg acctttgctt gcgcccgttc tctaagccac ccaatcagcg
      241 cctctatcgt ggcgcgcacc gcaggtgaat cgcgggcgca gatggttgac ccgcacgagc
      301 gaacccccaa tactcaggtc agcgcgcgat ggaaatgcct atccgtggga ggtggtcgaa
      361 tgaggcggcg ggtgatcgtc gcaggtttca ctggaattgc ggtactgtca atgcgaccgg
      421 gtgcccgagc gcagcaggcg ccgcgacgga tcgcgcgggt ggcgatcctg tcgccgggcg
      481 cgagcgaggc gcgctccgtg ctcacggcgt ttcgcacgcg attgtgcgag ctcggctacg
      541 tggaaggtcg cgatgtcgcg ctcgaattcc atttcgcgaa tggcagcgag cgcctcgcgg
      601 ccttggcgca ggcgatcgtg cgcgacggcc ccgatctcgt gttggccgac ggccggttgg
      661 ccgcacaggc gatgcgtgcg gcgagccgca ctatcccgat cgtcgcgatc accggcgaac
      721 cggtcacgtt cggcttggcc gagagcctgg cgcgcccagg cggcaacgtg acgggcatcg
      781 cgacgatgtc cgcagagctc ggggccaagc agctcgagct cctgcgcgag atactgcctc
      841 gggcacggcg catcggcgtc gtcgacgcat caatatctgc ggtgagctat cgcgcctttg
      901 agggccgtgc cgcacggccc tcggcgatgt cgacggtatc gtcgtgccgc cgagcgcacc
      961 ggtggtcgga ttgagcgcaa ccctggttcg gctcaccaac gccagcggca aaccggcgat
     1021 ctacggcgat cgcgacttcg tcgccgcagg cggcctggtc ttctacggca cgtcatcgac
     1081 gatgctttcc ggcgcagcgc gagcctcgcc gaccgcgtgc tcaagggcgc cagcccggcg
     1141 gagacgccgt tcgaacagcc gacgcgcgtc gcgttcgtcg tcaacctcaa gaccgcgaag
     1201 gcgctgcggc tcacgatccc gcaatcggtg ttgttgcgtg cggacgagtt gattcaatga
     1261 cggatcgtcg cgcgttgtgc acacatttcg cttaccagag cgctaccgcc gtgcgatggc
     1321 ggcccaacgt tgcggcctca ggcgcaacgg tcgagggcct gcgctaagtc gtcgatcagg
     1381 tcatcggcat gctccagccc gaccgacatg cgcagcaggc cctgcggcgt ctcgctcgcg
     1441 ggcccttcga tggaggcgcg gtgttcgatc aggctttcca cgccgcccag gctggtggcg
     1501 cgcgtgaaca cctcgacatg ggcggccacg gtcatcgccg catccttgcc gcccttcacc
     1561 tcgaacgaca gcatgccgcc gaaatcggac atctgcttct tcgccagcgc gtggaacgcg
     1621 ttgtcttcca ggcccgggta gtgcacggca gacaccttcg ggtgattgcg caggaaggtc
     1681 gcgagtttgc gcgcgttggc gcagtgcgcc tgcatgcggt aggcgagcgt cggcagactg
     1741 cgcatgatca gccagcagtc gaacggcgag ggcaccgcgc cgccgaacaa ctgcgccgtg
     1801 cgcacctgtg cgaagggctc gtcgtcggcg cgcgtgatgg ccgcgccgcc cagcacgtcg
     1861 ctgcgcccgc cgaggtactt ggtggtggcg tgcatcacca tgtcgcagcc gagatcgagc
     1921 gggcgttgca gcgccgggga ggcgaaggtg ttgtcggcca ccgcacgtgc cccggcgcgg
     1981 tgagcgatgg ctgccacggc cgagatgtcc acgcaccgca gcagcgggtt ggagggcgtc
     2041 tcgatccaga cgatgcgcgt gttggcctgc acggcgcgcg tcacgtcgtc gagatgggtc
     2101 atgtcgacga aagtggcgct gacctgccat ttggcgaaca ggtgcttcaa cacgttggcc
     2161 gtgccgtggt agatgtcctt cggggcgatg acatggtcgc ccggctgcag gccctgaaag
     2221 atcgccgtca ctgcggccag tccggacccg aacgcggcgc ccgacgtacc gccttcgagc
     2281 gcggccagcg cggcctccag gccgttgcgg ttcgggttgt gattgcgcga atacaggtag
     2341 ccgtgaggat atgtgccgtc ggcgtcgcgc tcgaaggtgg tggaaaggtg gatgggctcg
     2401 acgaccgcgc cggtggcggg gtccacgccg tggccggcat gcaccgcgag ggtctcgaat
     2461 ctataggtct tggaggtctt catgtgaaag gtcttgcggt cagtggctag tgtgagcccg
     2521 ggcttcgcgc cgtcgcatgc gtccgcagaa tcaggacgag tggaagaagt cattgtcgtt
     2581 cgactagtct agaagactgc gaacgtgccg atccgcggcc gatgcgctcg gtacccgcgc
     2641 acttgaggca ccccccgacc ggcgcttcag cctcatgcgc tgagccggtc gaacaattgc
     2701 ttgcatttcc agcgaattcc accagaatgg cgcgcgcgcg gcgcagatgc ccgcggatct
     2761 cacgtaatca aaggggaacc cttgatcaaa cgcatggtgg tgctcgcagc atcgttcatg
     2821 gccctggccg ccgtggccca gcaggatcag cgtcccgatc gtcaggtgat cgacgttcag
     2881 gtggtcaacg ggcggatcgt cgttcccgag gaagtcgccg aaaccaatga gcgcgagggc
     2941 gcgctggtgt ggcgtctggt cgagccgggc tatgcattcc cggaaaacgg gatcgtggtc
     3001 gactcgaaag gcaagcatcg ctgccaggtc aaccccgaca atgagcggcg ctttcggtgc
     3061 gccaagctcc gccacgaccg gggcgagcgc tacaagtacg tcgtcaatgt gatcgacacg
     3121 cggtcgcagc aaccgttgga gccactggac ccctatatcc agaacaactg accctgcgca
     3181 ccgcgggcgc catcggtcaa ggcgcaccgg ccccgagcat cgagtccagg cgcgccaacg
     3241 ccacgccgag ttctgactcg agcccggcgc cagcctgtac tgccagcgcc accgcctctt
     3301 cgtgcgccgc gcgtgccgcc tgcgccatgc cggccagcca ttcgcattcc gcgcggctgc
     3361 acagcagcag gcccaggctg agctggtcgg acacctcgtg caggatcgcc tgcccgtttg
     3421 caaggcagtc gcgcgctgcg tcgaacgacc gcttctggcg ggcatgcgcc agcccgaggt
     3481 agccgaggat ctggccctcg gcccgccggt cgccgatctg ccgtgcaacg gcgagtgctg
     3541 catcgaagcg cgccagcgcc tgcggccctc gaccggaggc ctcgtacacg agtccgaggt
     3601 tgcacagcac gatgcactcg agctgtgcgt ggccgagctc gcgcgccacg acgagcgcgg
     3661 cctcggaggt gctgccggca tcgtccaggc ggccctgcac atagtgcatc atgcccaggt
     3721 tgcacagcgt gttgccttcg cgcttgcgat cgccgagctc gcgtgcgatg agcaaagact
     3781 cttcgctgtg gacgcgcgcc ggatccatgc gcccgaggct ggagtgcaag ttgccgaggt
     3841 tgccgagcaa ggcgccctgc cagcgccggt cgccgacatc gcgagccagc ctgagtgccg
     3901 cttcgtaggg gatctgcgcc tcggccatgc ggccgtgctc gaattccaac gtgccaatgc
     3961 cgttgagcgc agcgcattcg agcgcaggct cgcccacctc gcgggccagc tggactgcgc
     4021 gggtgagctc ggcgcgggcc agatcaatgc ggccttcgcg agcgcgcagc tcgcccaggc
     4081 tgaccctgac cgcggcttcg cagtgcttgt cgcctgccgc aagtgcatgc tccagcgcga
     4141 tctggtaatg caccccggcc ttggctcgct gacccaacgc atggagggcg ctgcccagta
     4201 cggcatggct gtgcgcggcc gcacgcgcgg gcaacccggg aatggcgcat acggattcgg
     4261 ccaagtcgac cccgaccttg aacggcccgt gcaggctcaa ggcagcccag gcgccatcga
     4321 ggacgccagc ggctgcctcg gtgtcaccgg acgcgacgcc gcgccggcac gcggcgacca
     4381 ggttgtcgag gtcggcacat gcgccttcga tcgcacggcg gggcccaagc gcggcgaacc
     4441 atctgccgtg ttgtgcatgc gccgcccgca gcgccgccgg gccgctgccg acgtagcgcc
     4501 cttcggtctg caagtgctcg gcggcgtagg cctgcacgct gaccagtagg tcgaagcgtt
     4561 ccgcgtcgag cggccgcacg aacgacttgt cgacgagcga gttcaccacg tccaccgtcc
     4621 aaggcgcatt gtcgaggccc gagaagtcga tcactgcctc ggccgcctcg agcgtgaaac
     4681 cgccctcgaa caccgacacc tgcgcaagcg ccgccttctc ggccgacgtc aggagatccc
     4741 acgaccagtc gaatgcggct cgcagcgtcg actggcgatc cagccggttg cccgtggagg
     4801 ccagcagctt gaagcgttcg ctcatgcgcg ccaggagggc gcgaggcgtc agggtgcgca
     4861 cacgcgcggc ggccagctcg atcgcgagcg gaaggccatc gagcaactga accagcgttg
     4921 cgatcgcggc ctggtcctcg ggcgtgggat gaaaggcacg cttggcggcg gcggcccggc
     4981 gcaggaacag cgcttgggca tcaggcgcct gcatcggcgc gagcgccagt gcctcttccc
     5041 ccgcgatgcc cagcacctct cgggaagtta cgagaaagcg tgcctgggct gcgcgttcga
     5101 gccagcggcc cagcgtggcc tcggcatggc gtaccacctg ctcgaagttg tccaggatca
     5161 cgaggcacgc accgcgcccc gcgatggcat ggcccagctg caccaccggg tcgtccttgt
     5221 cgagcggcac gtcgagtccc tgcgcgaccg cactgacgag cccctcgacg ctgcgcgccg
     5281 gcgcgaggtc gcagaaccac acgccgccgg gaaagtcgcc gagccagccc cagccgaagc
     5341 gggtggccag gcgtgtctta ccactgcccc caatgcccag caacgagacc agtcgcccac
     5401 cgctgtcgaa gcgcctggcc agttcgagca agctggtgcg ccggccgacg aaggcgtcgc
     5461 gttcggccgg caggctatga cgcgtttcgc gcgcgggcaa ccaaagatcg ccctgccgga
     5521 cgacgcggta caccttggcg gcgtcggggg gcggcgtgaa cggcgcactg gcctcgccca
     5581 cctcgaaaag ttccagcggc gcgggcaagc cctgcatccg ccagtgcccg tgcgacagga
     5641 cgcggtgcga gacggtcccg agcgcattca gggcggccgc cgtgaccagg gtctgtccgc
     5701 cgagggccgt ggacatcacg cgcgccgcga tcggcttgct caccccgtcc acttccagcg
     5761 gcttggcgcc aagtgtcacg tcctgggccg agttttcgcg cacgctgacc agacccacat
     5821 gcagtccggc tcgtgcgcgc atcggcacct cgagccctgc aagcgcacgg tgataggcca
     5881 gcgcgtattc cagcgcgtcg gctgcctctg caaacatgag caggaagcca tcggacttgt
     5941 cgatctcccg gccgcgccat tcacgcagca ggtcgcgcgc gagccgatcg tgagcggacc
     6001 agagcgaggc catggccgca tcgcccagtc gcgcggcgag cgcggcgctg tccaccacat
     6061 cggtcagcag cagggcgatc ggcgcgtcca tcgatggagt atctgcgact ccaggccctg
     6121 gaatctgcgg cccgcgcggc tacccgcccg cccgctccct cgccgcctgc agcgtgtgca
     6181 gcgtgatctt gcgcacctcg gccttgctct gctcgatgtg cgtcttcagc aacagctgcg
     6241 cctggtcggg ctttttctgc atcacggcgc gcaggatctt ggcgtgctcg acgtaggtcg
     6301 cttcgatgcg gtcggcgcgc gtgaaatcga ggcgccggat gatgcggatg cgctcggtca
     6361 cgtcccagtg cacgcgggcc atttcgccgt tgcccgcggc gcgtacgagc gtggcgtgga
     6421 actgctcgtc gtgcccgccg accgcgcgcg cgtcgcccag gcgctcgccg ggcggcacga
     6481 gccagaccga cttcagcgct tcgagctccg gcgtggcttc ggcgcgcgcg cacaggcgcg
     6541 cgacgctggc gagctcgagc accacgcgca ggtcgtagag ctgttcgagg cggccgaaat
     6601 cgatcggcag cacgtaccag ccgagcttcg attcgacgcc gagaaagcct tcgttgcgca
     6661 gcctgaacaa ggcttcgcgc accggcgtgc ggctcatgcc gaggcgctgg ccgaggtcgg
     6721 cttccgagaa gcggtcgccg gcgacgagtt ggaagtcgtg gatctgcgcc ttcagcgtgt
     6781 cgtagacctg ctcggcgagc ttgccggcgc gcacaccgtt gccggcagcg gccgtcatgg
     6841 cgcgagcagg ctcacgtgcg ccgcgaccac acgccagccc tcggcaaagc ggacccaggt
     6901 ctggctctgc cggccgatgc gggggttgcc ttcgcgctgg aactcggtca tcgcggtcgc
     6961 gaagtcgcgc ccgaaggtgg tgatcacggt gtggcccagc gtgcgggcga ggccggcgct
     7021 cggccgggcc gcgcgaaacg cgcggatcgc ctcgatgccg accaggttct cgccggcgcc
     7081 gtagcgcacg acggcgtcgg agtgccagaa cagttcgtcg agcacgtcgg tccggttgtg
     7141 gacaagggcg tcttcatagc gcgcgaagac cgcgctcacc tcgttcaaca catcgggcag
     7201 gttgatctgg accgtcatgg cgtgggaagg gccgcgacgg gcgcctgcac gatgccggca
     7261 ttttgcagat gctgcgcgac ccgcaggacc aggtcttcgc gccacggcgc ggcgatgagc
     7321 tgcacgccga tcggcagcgt cgggtggcag ccccacaccg gcaccgagca caccggcagg
     7381 ccgatgaacg agatcggctg cgtgagcaga cccatgctcg gtcgggccgg caggcgcttg
     7441 ccgttgatcg tgatccattc ggtgccgacc tccggcgcct cgcacggcgt ggccggcgcg
     7501 atcagcaggt cgacttcgcg taagagttcg gcggcgcgca gcgcgaacca gcggcgcacg
     7561 cgttgcgcct gcacgaccca ggcggcgggc agcagcgcgc cggcgagaaa gcggtcgcgc
     7621 gagaggggct cgaaatcggc ggcgcgcgtg cgcaggtcgg cgaggtgcag ggcgccgcct
     7681 tcggcgttcg tgatcaggaa ggccgcagcg cgcgcccgcg cgacctccgg gagggtcacg
     7741 gtgtggcgcg catcgagcgc cgtc
//
LOCUS       DASVHM010000632         3236 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_985468, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000632 DASVHM010000000
VERSION     DASVHM010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3236
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_985468"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            28..920
                     /gene="hflC"
                     /locus_tag="VF308_11770"
                     /pseudo
     CDS             28..920
                     /gene="hflC"
                     /locus_tag="VF308_11770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011483514.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0045861 - negative regulation of
                     proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
     gene            927..1127
                     /locus_tag="VF308_11775"
     CDS             927..1127
                     /locus_tag="VF308_11775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2065 domain-containing protein"
                     /protein_id="HEX7437381.1"
                     /translation="MTASFSDLALGAFALMLIAEGLLPFLSPASWRRVFERALRMSDG
                     QIRFLGLFSLLAGLALLFFFLP"
     gene            1210..2373
                     /locus_tag="VF308_11780"
     CDS             1210..2373
                     /locus_tag="VF308_11780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEX7437382.1"
                     /translation="MSSAWLLPEHIADVLPAQARHIEELRRGLLDVAASYGCELVMPP
                     LLEHIESLLSGTGRELNLKTFKLVDQLSGRTLGVRADSTPQVARIDAHLLNRSGVTRL
                     CYCGPVLHTRPAGIHASREPLQFGAEIYGHGGLEADLEIQDLALDCLRRAGVAGATLD
                     LGDARIVRALLGESRPGAAQLDAVYAALAAKDAAGLIESTRELGAATRRGLHDLLALY
                     GGVEVIDAARRILPVHAGIRAALDDLELLAGHARAAHPHASVGFDLADIGGNDYYSGA
                     RFAVYAEGSSDAIARGGRYDEVGAVFGRNRPAVGFSLDLKELAALVPGAARRPAIRAP
                     WSEDADLRVAIRRLREHGETVVCVLPGHETEGEEFACDHELVARHGQWEVRAL"
     gene            2415..>3236
                     /locus_tag="VF308_11785"
     CDS             2415..>3236
                     /locus_tag="VF308_11785"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007871240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HEX7437383.1"
                     /translation="MQQTKTGGRNVVVVGTQWGDEGKGKVVDWLTDHAQAVVRFQGGH
                     NAGHTLVIKGVKTALQLIPSGIMRDGVACYIGNGVVVDPVHLIGEIERLESMGLEVRS
                     RLFISEACPLILPFHVEVDRAREALRESSGAGKIGTTGKGIGPAYEDKVARRALRVQD
                     LKHPERFAKKLRELLDLHNFALEGYLHATRLEFEPIFELAMQVAKQLRPMMADVGYIL
                     HSANRAGANILFEGAQGTLLDIDHGTYPYVTSSNCVAGAAAGGAGVGPQMLHYVLG"
BASE COUNT          521 a         1098 c         1083 g          534 t
ORIGIN      
        1 agacgcgctg agttccggag cagtcccatg aatcgcatcg gtttgatcgt cggcggcgtc
       61 ctgctcgtct tgatgctggt ctcgtcgaca ctgttcatcg tcgaccagcg ccaggtcgcc
      121 gtggtctacg ccctcggtga gatcaaggag gtcatccagg agccggggct caaggtcaag
      181 ctgccgccgc cgttccagaa cgtggtcttc tcgatcgccg catccagacc ctcgacagcg
      241 ccgagaaccg ggcgatcttc accgccgaga agaagagcct cgtcatcgac tggctcgtca
      301 agtggcgcat caacgacccg cgccagttca tcctcaacaa cggcgtcgac atccgcaacc
      361 tcgaggcccg cctgagcccg gtcgtgcatg cggcattcaa cgacgagatc accaagcgca
      421 ccgtcggcgg ggtgctctcg accgagcgcg acaaggtggt cctggacgtg cgcaaccgtc
      481 tcgccgaaga cgccaagtcg ttcggcatcg agatcctcga cgtgcgcatc aagcgggtcg
      541 acttcgtcgc caacatcacc gagtcgatct acagccgcat ggccgcggaa cgcaagcagg
      601 tcgccaacca gttgcgctcg accggcgcgg ccgagggcga gaagatccgc gccgacgcgg
      661 atcgccagcg cgaggtcatc atcgccgagg cgtatcgcga cgcgcagaag gtcaagggcg
      721 agggcgatgc gaaggcctcc gcgctcttcg ccgatgcctt cgggcgcgat ccgcaattcg
      781 ccgtgttcta ccgaagcctc gaagcgtatc gggcgagctt tcgcaacaag acggacctga
      841 tcgtcgtcga tccggccagc gagttcttca aggcgatgcg cggcaattcg agcgcggcgg
      901 ccgcgccatc gaggaagtag ccggcggtga ccgcgagctt ttcggacctc gcgctcggag
      961 cattcgccct gatgctgatc gccgaaggat tgctgccgtt cctgagcccg gcctcatggc
     1021 gccgtgtgtt cgaacgcgcc ctgagaatga gcgacggcca gatccgtttc ctcggtctct
     1081 tcagcctgct tgccggcctc gcgctgctgt tcttcttcct gccttgaacc ccgggtgggc
     1141 acgtgctgcg gcagtccgga cgcaggttcg ggccggtaca atcctgtttt caatcccccg
     1201 gcgttttgca tgtcctctgc ttggctgttg ccggagcata ttgccgatgt actgcccgcg
     1261 caggcaaggc acatcgagga gttgcgccgc ggcctgctcg acgtcgcggc cagctacggt
     1321 tgcgaactgg tcatgccgcc cctgctcgag cacatcgagt cgctgctgtc gggcacgggc
     1381 cgcgaactga acctgaagac cttcaagctg gtcgaccagc tcagcggccg cacgctcggc
     1441 gtgcgcgccg acagcacgcc gcaggtggcc cgcatcgacg cccacctgct gaatcgctcc
     1501 ggcgtcacgc gcctgtgcta ttgcggcccg gtgctgcaca cgcggccggc cggcatccac
     1561 gcctcgcgcg agcccctgca gttcggggcc gagatctacg gccatggggg gctcgaagcc
     1621 gatctcgaga tccaggatct ggccctcgat tgcctgcgcc gggccggcgt ggccggcgcg
     1681 acgctggatc tgggggatgc gcgcatcgtg cgggccttgc tcggcgaatc gcggcccggc
     1741 gcggcgcagc tcgatgcggt ctatgcggcg ctcgcggcca aggacgccgc gggcctgatc
     1801 gagtcgacgc gcgagctcgg tgcagcgacg cgccgtgggt tgcacgacct gttggcgctc
     1861 tatggcggcg tcgaggtcat cgatgccgcg cgtcgcatcc ttcctgtgca cgccggcatc
     1921 cgcgcggcac tcgacgacct cgaactcctc gccggacatg cgcgcgcggc gcatccgcat
     1981 gcgtcggtcg gcttcgacct ggccgatatc ggcggcaacg attactacag cggcgcccgc
     2041 ttcgcggtct acgccgaagg ttcgagcgac gcgatcgccc gcggcgggcg ctacgacgag
     2101 gtcggcgcgg tgttcggccg caaccggccc gccgtcggct tcagcctcga cctgaaggaa
     2161 ctcgcggcgc tggtgccggg cgctgcgcgg cgcccggcga tccgcgcgcc atggtccgag
     2221 gatgcggact tgcgcgtggc gatacggcgc ctgcgcgagc acggcgagac cgtcgtctgc
     2281 gtcctgcccg gccacgagac cgagggcgag gaattcgcgt gcgatcacga actcgtggcg
     2341 cgccacgggc agtgggaagt gcgcgcgctc tgaggcgcgg tcgcccgttt tttcaggatc
     2401 ggaatctcac agacatgcag cagacgaaga ccggtggccg caacgtggtc gtggtcggca
     2461 cgcagtgggg cgatgaaggc aagggcaagg tcgtcgactg gctcaccgac catgcgcagg
     2521 ccgtggtgcg gttccagggt ggccacaacg ccggccacac gctcgtgatc aagggcgtga
     2581 agaccgccct gcaactgatt ccttccggga tcatgcgcga cggcgtcgcc tgctacatcg
     2641 gcaatggcgt cgtcgtcgat ccggtccatc tgatcggcga gatcgaacgg ctcgaatcga
     2701 tggggctcga agtgcgctcg cgcctcttca tcagcgaagc gtgcccgctg atcctgccgt
     2761 tccacgtcga ggtcgaccgg gctcgcgaag cactgcgcga gtcgagcggc gccggcaaga
     2821 tcggcacgac cggcaagggc atcggccccg cctatgaaga caaggtggcg cgacgcgcgc
     2881 tgcgcgtgca ggacctgaag catcccgagc gcttcgcgaa gaaactgcgt gaactcctcg
     2941 acctgcacaa cttcgcgctc gaaggctatc tgcacgcgac gcggctcgag ttcgagccga
     3001 tcttcgagct cgcgatgcag gtcgcgaagc agctcaggcc gatgatggct gacgtcggct
     3061 acatcctcca cagcgccaac cgcgccggcg ccaacatcct cttcgaaggc gcgcagggca
     3121 cactgctcga catcgatcac ggcacctatc cgtacgtgac gtcgagcaat tgcgtcgccg
     3181 gggccgcagc cggcggcgcc ggagtgggcc cgcagatgct gcattacgtg ctgggc
//
LOCUS       DASVHM010000633         2133 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_695268, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000633 DASVHM010000000
VERSION     DASVHM010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_695268"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..1598)
                     /locus_tag="VF308_11790"
     CDS             complement(144..1598)
                     /locus_tag="VF308_11790"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX7437384.1"
                     /translation="MRTVGWLAAAAGSALFVGASRAENPAEVLELPQVGIVGTTPLPG
                     SGIALRDLPANAQIYTSRDLRRQGAASITDFLERNGGGVGLNAAQGNPYQPDVNVRGF
                     SASPLLGTPQGVSVFFDGVRINEPFGDSVNWDLIPQSAISSIQLIPGSNPAFGLNTLG
                     GAVAIYTKSGASEYPDKPGFGANVTAGSFGRRRLVLDGGGKRGSWDWFATANDALDRG
                     WALHNQSRVRQLFTKIGWQDDRTDLDLSFSAADNRLEGTQTLPASFDDPRQPYTYPDT
                     NTNRVAFLSFKGSHALTESWLLSGNAYLRRFRNRNVSSNVNDAFAGAGSAEATNDAAS
                     IDQTGRGAGLQLTGSDRIAGRANKLMLGLGIDQGSARFRRSSQDAQFTPDRGTIGTGS
                     FMPDTDVDSKTRYLGAYASDALSLDQRWTLTLAGRYNRADIRIADRSGIAPELDGQHH
                     YARFNPAIGLTFNPSGALTTYASYNEGMRAPTAI"
     gene            complement(1659..>2133)
                     /locus_tag="VF308_11795"
     CDS             complement(1659..>2133)
                     /locus_tag="VF308_11795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009666278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HEX7437385.1"
                     /translation="EGEAVDIIDVARRTQVAQIPVGARPRGIGFSPDSKRAYVAAENA
                     NEVYVIDALAFTILTRIKAGLRSNGIAVHPGGKQVYVSNGGDATVSVIDVASNSVTAT
                     IGVGQRPWNMALTPDGRKLYVACGRSGSVSVIDTERGVRIADIAVGKLPWGVAIR"
BASE COUNT          291 a          682 c          780 g          380 t
ORIGIN      
        1 agcgcggcgc tccacttcgt ctcgccgccg agcttgccgc gcgcaccgac ttcgatggtc
       61 ttcgagacga ccattttcag tgcggggtcg gcgaggaaat tgttgggcag cttgcacggg
      121 gcgttcgggt ccgcgcaggt cagctagatc gctgtcggtg cgcgcatgcc ttcgttgtag
      181 ctcgcatagg tcgtcagcgc gccgctcggg ttgaacgtca ggccgatggc ggggttgaag
      241 cgcgcgtagt gatgctggcc gtcgagttcc ggcgcgatgc cgctgcgatc ggcgatgcgg
      301 atgtcggcgc ggttgtagcg cccggcgagg gtgagcgtcc agcgctggtc caggctcagg
      361 gcgtcggatg cgtacgcgcc gagatagcgg gtcttcgaat cgacatcggt gtccggcatg
      421 aagctgccgg tgccgatcgt gccgcggtcg ggcgtgaatt gcgcgtcctg ggagctgcga
      481 cgaaagcgcg cactgccttg gtcgatgccg agcccgagca tgagcttgtt ggcgcggccg
      541 gcgatcctgt cgctgccggt gagctgaagg ccggcgcccc ggccggtctg gtcgatcgac
      601 gcggcgtcgt tggtcgcttc ggcgctgccg gctccagcga acgcgtcgtt gacattgctg
      661 ctcacgttgc ggttgcgaaa ccgtcgcagg taggcattgc cgctcagcag ccaggattcg
      721 gtcaacgcat ggctgccctt gaaagagagg aacgcgaccc ggttcgtatt cgtgtccgga
      781 taggtgtaag gctggcgtgg gtcgtcgaag ctcgccggca gggtctgggt gccttcgagg
      841 cggttgtccg cggcgctgaa gctgaggtcg aggtcggtcc ggtcgtcctg ccagccgatc
      901 ttcgtgaaga gctgccggac gcggctttgg ttgtgcagcg cccagccgcg gtcgagcgcg
      961 tcgttggccg tcgcgaacca atcccaggag cctctcttgc cgccgccgtc gaggacgagc
     1021 cggcgccggc cgaaggaacc cgcggtgacg ttggcgccga agcccggctt gtcgggatat
     1081 tcgctcgcgc cgctcttggt gtagatggcg accgccccgc cgagcgtgtt gagtccgaac
     1141 gccgggttcg agccggggat cagctggatg ctcgagatcg ccgactgcgg aatcaggtcc
     1201 cagttgacgc tgtcgccgaa cggttcgttg atgcgcacgc cgtcgaagaa gaccgaaacg
     1261 ccctgcggcg tgccgagcag cggcgaagcg ctgaagccac gcacgttgac gtcgggctgg
     1321 tacggattgc cttgcgccgc attcaggccg acgccgccgc cgttgcgctc gaggaagtcg
     1381 gtgatgctcg ccgcaccctg ccggcgcagg tcgcggctcg tgtagatttg cgcgttggcc
     1441 ggcagatcgc gcagtgcgat gccggagccc ggcaacggtg tcgttccgac gatcccgacc
     1501 tgcggcagtt cgagcacctc ggcgggattt tcggcgcggc ttgcgcccac gaagagcgca
     1561 ctcccggcgg ctgccgcgag ccagccgacg gttcgcacga cacggagcct gcggatcttc
     1621 ggcatcgctg ctggcgggtc tgacagcggg ctcggcgttc agcggatcgc gactccccag
     1681 ggcagcttgc cgaccgcgat gtcggcgatg cgcacgccgc gctcggtgtc gatcaccgaa
     1741 acgctgcccg aacggccgca cgcgacatag agcttcctgc cgtcgggcgt gagcgccatg
     1801 ttccaggggc gctggccgac cccgatcgtg gccgtgacgc tgttgctggc gacgtcgatc
     1861 accgacacgg tcgcatcgcc gccgttggac acgtagacct gcttgccgcc cgggtgcacc
     1921 gcgatgccgt tgctgcgcaa gcccgccttg atgcgggtga ggatggtgaa cgccagcgcg
     1981 tcgatcacgt agacctcgtt ggcgttctcg gcggccacgt acgcgcgctt gctgtcgggc
     2041 gagaagccga tgccgcgcgg gcgcgcgccg accgggatct gcgccacctg ggtgcgccgg
     2101 gcgacgtcga tgatgtcgac cgcctcgcct tcc
//
LOCUS       DASVHM010000634         3047 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1346327, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000634 DASVHM010000000
VERSION     DASVHM010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1346327"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..286)
                     /locus_tag="VF308_11800"
     CDS             complement(<1..286)
                     /locus_tag="VF308_11800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011658471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase type II"
                     /protein_id="HEX7437386.1"
                     /translation="MTLDQPKATPASIKALIFDVFGTLVDWRGGVAREAETLLAPRGI
                     ALDWLAFADAWRAQYQPSMQAVRTGRLPFSKLDVLHRRNLDVVLDDFGLHG"
     gene            complement(283..1041)
                     /locus_tag="VF308_11805"
     CDS             complement(283..1041)
                     /locus_tag="VF308_11805"
                     /inference="COORDINATES: protein motif:HMM:NF014228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sir2 family NAD-dependent protein deacetylase"
                     /protein_id="HEX7437387.1"
                     /translation="MQSKDVIETVRSWVDAAERIVVLTGAGISTDSGIPDFRGPKGVW
                     TRNPVAEKQSTIQHYLADPQVRKAAWRSRLEHSAWTARPNRGHLALVALERRGKLHAL
                     ITQNIDELHQIAGNSSEKTIEVHGTMRRVMCWSCARRAPMEEALARVRAGEADPACPS
                     CGGILKSDTISFGQALVPEVIDRAMTAAAEADLMLAVGSTLQVYPVAGAVPLAKEAGA
                     RVVIINDQPTPLDPIADALLRGPIGELLPAVCEI"
     gene            1086..1421
                     /locus_tag="VF308_11810"
     CDS             1086..1421
                     /locus_tag="VF308_11810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437388.1"
                     /translation="MASRRPAHRYHVYVVELSDAVWNEPRFRKANPDHQLGKPFVYVG
                     MTGLDPDLRFDRHKAGVQANRYVRDFGQRLLPRLYEVYNPMPYDGAREMEVELAIGLR
                     EAGYGVWQA"
     gene            1424..1900
                     /locus_tag="VF308_11815"
     CDS             1424..1900
                     /locus_tag="VF308_11815"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX7437389.1"
                     /translation="MSCGVLVLSAQGELLLGHAAGTPRWDIPKGRCEAGETEVQAAVR
                     ETAEETGLMFAPERLFDLGRFAYLRGKDLHLYAALVDRIDPARCVCTTWFRDAHGRMR
                     PEMDAFAWVGFGALAGRCGKTMSVLLTQKIALPALLQDLCEVERRSGPVPWRWCAG"
     gene            1993..2379
                     /locus_tag="VF308_11820"
     CDS             1993..2379
                     /locus_tag="VF308_11820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437390.1"
                     /translation="MALHLRMHSTPLHPGALMKIISKLVLAVAAAGFSVIAVAQSDQA
                     DMDRRARNREEAIAHHQGMMQGESMQPRHEGMRERASDGARSTRNFTHRQMDKMRNFS
                     ERQNRRHPAPAHMTTESDKAPSALGK"
     gene            2617..3006
                     /locus_tag="VF308_11825"
     CDS             2617..3006
                     /locus_tag="VF308_11825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011806420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkvA family protein"
                     /protein_id="HEX7437391.1"
                     /translation="MKVPGRVLVSAGAARRIRIYLVALWKLFRHPETPRAARWVAIAV
                     IAYAVSPIDLIPDFIPVLGQLDDMIIVPLGIALAVRLCPKPLWESLLREAEASAEKLP
                     RFWWSAVAVVLVWAGFLALGVWAWRAW"
BASE COUNT          483 a         1030 c         1015 g          519 t
ORIGIN      
        1 cgccgtgcag cccgaaatcg tccaggacca cgtcgaggtt gcgtcggtgc agcacgtcga
       61 gcttgctgaa cggcaggcga ccggtgcgca ccgcttgcat cgacggctgg tactgcgcac
      121 gccaggcatc ggcgaacgcc agccagtcga gggcgatgcc gcgcggcgcg agcagggttt
      181 cggcttcgcg cgcgaccccg ccgcgccaat cgaccaacgt gccgaacacg tcgaagatca
      241 gcgccttgat cgacgcgggc gtggccttcg gttgatcgag ggtcatatct cgcacaccgc
      301 cggcaggagc tcgccgatcg gtccgcgcag cagggcgtcg gcgatcgggt cgagcggtgt
      361 gggctggtcg ttgatgatca cgacccgcgc accggcttcc ttcgcgaggg gcaccgcgcc
      421 ggcgaccggg tacacctgca acgtcgatcc gaccgcgagc atcagatcgg cttcggccgc
      481 agccgtcatc gcgcgatcga tcacctcggg cacgagcgcc tgtccgaacg agatcgtgtc
      541 gctcttcagg atgccgccgc agctcgggca agccggatcg gcttcgcccg ctcgaacgcg
      601 cgcgagggct tcctccatcg gcgcacgcct tgcacacgac cagcacatga cacggcgcat
      661 cgtgccgtgg acctcgatgg tcttttcgga cgagttgccc gcgatctggt ggagttcgtc
      721 gatgttctgc gtgatgagcg catgcagctt gccgcggcgc tccagagcca cgagcgcaag
      781 atggccgcgg ttgggccgcg ccgtccaggc cgaatgttcg aggcggctgc gccatgcggc
      841 cttgcgaacc tgggggtcgg ccaggtagtg ctggatcgtc gattgcttct cggcgaccgg
      901 atttcgcgtc cacacgcctt tcgggccgcg aaagtccggg atgccggaat cggtcgaaat
      961 gccggcgccc gtcaacacga cgatgcgctc ggccgcatcg acccagctcc ggaccgtttc
     1021 gatcacatcc ttgctctgca ccgccgaagc ttaagcccag tctcgaccgc gcgagaatca
     1081 cgtccatggc gtcgcgtcgc cccgcccatc gctaccatgt ctacgtcgtg gaactgtccg
     1141 acgcggtctg gaacgagccc aggttccgca aagccaaccc cgaccatcaa ctcggcaagc
     1201 cattcgtcta cgtgggcatg accggcctcg acccggatct gcgcttcgat cggcacaagg
     1261 ccggagtcca ggccaaccgc tatgtgcgcg acttcggcca gcgcctgttg ccccggcttt
     1321 acgaggtgta caacccgatg ccctacgacg gcgcgcgcga gatggaagtc gagctcgcga
     1381 tcgggctgcg cgaagccggc tacggtgtat ggcaggcata gcgttgagct gcggcgtcct
     1441 ggtcctgagc gcgcagggcg agctgctcct cggccacgcc gccggaacgc cgcgttggga
     1501 cattccgaaa ggccgctgcg aggccggtga aaccgaagtg caggcggccg tgcgcgaaac
     1561 ggccgaagaa accggattga tgttcgcgcc cgagcggctg ttcgatctgg ggcgcttcgc
     1621 ctacctgcgc ggcaaggacc tgcatctcta cgccgcactg gtcgacagga tcgatcccgc
     1681 tcggtgtgtc tgcacgacgt ggtttcgcga cgcacatggg cggatgcgcc ccgaaatgga
     1741 cgcctttgcc tgggtcgggt tcggcgcgct cgccggtcgc tgcggcaaga ccatgagcgt
     1801 gctgttgacg cagaagatcg ccttgccagc gctcctgcag gatctgtgcg aagtcgagcg
     1861 gcgatcgggg cccgtgccgt ggcgatggtg cgccgggtag ggcggctccg acatgcgaac
     1921 gcgctctcgt cgccggcgat ctcgagacgt tgatgcctgt cgggaccgtc cgcgtcgatc
     1981 gacactcgcg ccatggcgct gcatcttcgt atgcattcga cgccattgca tccaggagca
     2041 ctcatgaaaa tcatctcgaa actcgttctc gccgtcgccg ccgccggctt ttccgtcatc
     2101 gcggtcgcgc agtcggacca ggcggacatg gatcgccgtg cgcgcaaccg cgaggaagcg
     2161 attgcccatc atcagggcat gatgcagggc gaaagcatgc agccgcgcca cgaaggcatg
     2221 cgcgagcgtg ccagcgacgg agctcggtcg acccgcaatt tcacccatcg ccagatggac
     2281 aagatgcgta acttcagcga gcgccagaac cgtcgccatc cggccccggc gcacatgacg
     2341 accgagtcgg acaaggcgcc gagcgccctc ggcaagtaag ccaaaggccg gcccgatcgg
     2401 gcgccggctg ccagccgatc cgcgagttcg cgaaggctcc tcgccgacag gtcgacgcgc
     2461 acgcgcatcc tgtaggctcg gagccttcac ttgctgctgg cccgtcatga agcaccatcg
     2521 cctttctcgg accgatctcg aggtttcgga aatctgtctc ggcacgatgg cctggggcga
     2581 gcagagcatc gccgaggcgc gccgcagggc gcaggcgtga aggtcccggg gcgcgttctc
     2641 gtgtccgcgg gcgcggcacg ccggatccgc atctatctcg tcgcgctctg gaaactcttt
     2701 cgccatcccg agacgccgcg cgctgcgcgc tgggtcgcga tcgccgtgat cgcgtatgcg
     2761 gtgagcccga tcgacctcat tcccgatttc attccggtgc tcggccaact cgacgacatg
     2821 atcatcgtgc cgctcggcat cgcgctggcg gtgcgcctct gccccaagcc gctctgggag
     2881 tcgctgctgc gcgaggccga agcgtcggcg gagaagctgc cccgattctg gtggagcgcc
     2941 gttgcggtcg ttctcgtctg ggcgggtttc ctggcgctcg gcgtgtgggc ctggagagcg
     3001 tggtagcgct tcgacctcac ccggcttgct tgcgcatcag cgtgctc
//
LOCUS       DASVHM010000635         2208 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1272149, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000635 DASVHM010000000
VERSION     DASVHM010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1272149"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..2208
                     /locus_tag="VF308_11830"
                     /pseudo
     CDS             1..2208
                     /locus_tag="VF308_11830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013539490.1"
                     /note="internal stop; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
BASE COUNT          351 a          774 c          710 g          373 t
ORIGIN      
        1 cccggagacg atggcaacct cggtcgcgct gcagctcgaa aagcagttcc agacgatccc
       61 ggggctcaat gtcatcagct cgagcaacac gctcggcgtg acctcggtga cgctcgagtt
      121 cgaccagggc cgcgacatcg acgcggcgtc ggtcgacgtg caggcggcgc tgctgcgcgc
      181 ggcgcgccag ctgccggtcg agatgaccgt gccgccggcg taccgcaagg tcaatccggc
      241 cgatgcgcca gtgctgctgc tggcgttgac ctcgccctcg atcagcctgt cggacctcaa
      301 cgacttcgcc gagcacctga tctcgccgac gctgtcgacg ctcgacggcg tcgcccaggt
      361 caatgtctac ggccagaagc gtttcgcggt gcgggtgcgc gtccagcccg atgcgctcgc
      421 ggcgcgcaac atcagcctcg acgagctgac caaggcgctt gcagccgcca acgccaacac
      481 gccggtcggg acgctcgaag gcccgtcgca gacgctgacc ctgcaggcca accggcagct
      541 gcgcaacggc gcctagttcg ccgaggtgat cgtcagcagc aagggcggca acacggtgcg
      601 cctgaaggac gtcgcgacgg tcgaggacag ctacgagacg gtgaagaccg cggcgacctt
      661 caacggcgag aactcgatca ccctcgcggt cctgcgccag cccgacgcca acacggtgaa
      721 ggtggtcgac gcggtgcgcg cctcgctcgc gggcttcgaa tcgcaactgc cccagtcggt
      781 gcgcatcaat gcggtcaatg accgctcggt gtcgatccgt gccgccctgc acgacgtgac
      841 gctgacgatg ctcggcaccg tcgtgctcgt cgtgctggtg atcttcctgt tcctgcgccg
      901 cttcgtcgcc accgccatcc cgaccttgtc gctgccggtc tcgctggtcg gcgcggtctc
      961 gctgctctgg gccttcggct acacgatcga caacatctcg ctgctcggcc tgacgctcgc
     1021 cgttggcctg gtcgtcgacg atgcgatcgt gatgctcgag aacatcatgc gccacgtcga
     1081 gcacggcgaa gcgccattcc aggccgcgct gcgcggctcg cgcgaggtcg gcttcacgat
     1141 catctcgatc tcgagctcgc tggtcgcggt gttcattccg atcttcttca tgcccggcgt
     1201 catcggcctc ttgttccacg agttcgcggt catcgtcgcg ctggccatcg tcgcctcggc
     1261 gttcgtctcg ctcactctcg tgccgatgct cgccagccgc ttcctgagcg acgaggcgca
     1321 caagaagcgg ccgggaaggg tcgtgcgctc gttcgagcgc ggcttcgacg cgctgctcgg
     1381 cggctacacg cgctcgctcg acgtcgcgct gcgccatcgc ggcctcgtcc tgttcatcgc
     1441 cttgctcacc ttcgtcgcca cggcgtggct cttcgtcacg attcccaagg gcttcttccc
     1501 gcaggaagac atcggccaga tcagcatttc gaccgaggcc gcggaagacg tgtcgttccc
     1561 cgccatggtc agcctgcagg cacgtgttgc cgatgtcctg cgcaacgacc cggcggtggc
     1621 gaccgtgaac tcgttcaacg gcgcgggcgg cgccggcggc tcgctcaacg tcggccggat
     1681 gttcatcaac ctgaagccgc gcggcgaacg cccgccgatg aaggacgtgg tcgagagcct
     1741 gcgcaagaag ctgcgcgagg tgccgggcat cagcgtctac atgcggccga tccagaacct
     1801 gcagctcggc ggccggcaga gcaaggcgca gtaccagtac atcctgcaga gcgtgcaggc
     1861 gggcgagctc aacgactggg cgctgaagct gcaggagccg atgcgcagcg acccgatgtt
     1921 tcgcgacgtc acgagcgact cgcaactgaa gggcctgcag gcctcgctga agatcgatcg
     1981 cgaccgcgcc aacacgctcg gcgtctcgat cgacgcgatc cgctcggccc tctacagcgc
     2041 cttcggcgag cgccaggtgt cgacgatcta caccccggtc gacagctacc aggtgatcat
     2101 ggaagtcgcg cccggcgcca agcaggacga gagcgcgttc aacaacatct atgtgcgctc
     2161 gtcgaccggc gcgctggtgc cgttgtcgag cttcgcgacc gtcaatcg
//
LOCUS       DASVHM010000636         1924 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_118001, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000636 DASVHM010000000
VERSION     DASVHM010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1924
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118001"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..608)
                     /locus_tag="VF308_11835"
     CDS             complement(78..608)
                     /locus_tag="VF308_11835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX7437392.1"
                     /translation="MKQNDPSHTLLEDAQELGHEARAGSGDHAALKLWLRMLASTTHI
                     EAEIRRRLRDRFEISLARFDYMAQLYRYRDGMKMRELSRYLMVTGGNVTGLTDDLARE
                     GMVVRESSPSDRRAWIVRLTPKGRRHFETMAREHEGWILELFAGLDAKTVQQLYAHLG
                     QLRVHLVRNDQASEET"
     gene            complement(655..>1924)
                     /locus_tag="VF308_11840"
     CDS             complement(655..>1924)
                     /locus_tag="VF308_11840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003262850.1"
                     /note="catalyzes the conversion of salicylyl-CoA to
                     gentisyl-CoA; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional salicylyl-CoA
                     5-hydroxylase/oxidoreductase"
                     /protein_id="HEX7437393.1"
                     /translation="ISHENLRLRDKGYVEGYEDWIAEQAGVHRVAPHGSIPPMLTPFT
                     ARGTTLKNRIVVSPMAQYSCVDGIAGDFHLVHLGARALGGAGMVVAEMTCPTPDARIT
                     PACPGLWNAAQRDAWKRIVDFVHANSDAKIAMQLGHAGAKGSTRVPWEGEDQPLAEGN
                     WPLVSASPQQYLDGVSDWSRAMTRADMERVRDDFVRATRYAAQAGFDWLELHCAHGYL
                     LSSFISPLTNQRTDEYGGSLANRLRYPLEIFHATRQVWPQHLPISVRISAHDWVEGGI
                     TPDDAVEIARAFKAAGADLIDCSSGQVSKRQQPVYGRMYQTPFADRIRNEAGIATIAV
                     GAISEADHVNSIIAAGRADLCAVARPHLANPAWTLMESAKIGYPDVEWPKQYRAAKVQ
                     LERNLERERAAAAQGAGLSAIEQANRALGV"
BASE COUNT          252 a          644 c          689 g          339 t
ORIGIN      
        1 attttcgttg ttcgtcgttg cgctcgagcg cgcctctgcg cgcctgagcc ttgcattgac
       61 cgccgccaag cgtcacccta ggtctcctcg gatgcttgat cattgcggac cagatgcacg
      121 cgcagctggc cgaggtgtgc gtacagctgc tgcacggtct tcgcatcgag ccccgcgaac
      181 agttcgagga tccagccctc gtgttcgcgc gccatcgttt cgaaatggcg ccggcccttc
      241 ggcgtgaggc gcacgatcca ggcgcggcgg tcgctcgggc tgctttcgcg cacgaccatg
      301 ccctcgcgcg ccaggtcatc ggtgagcccc gtgacgttgc cgccggtcac catcaggtag
      361 cgcgacagct cgcgcatctt catgccgtcg cggtagcggt agagctgcgc catgtagtcg
      421 aagcgcgcga gcgagatctc gaagcggtcg cgcaggcgcc gccggatctc ggcctcgatg
      481 tgcgtggtgc tcgcgagcat gcgcaaccag agcttcagcg cggcatggtc gccgctgccg
      541 gcgcgcgcct cgtggccgag ctcctgggcg tcttcgagca gcgtgtggga cgggtcgttt
      601 tgcttcatgg cgttgctcgg gttgtgcggt cgcggccggt cgcttcgaat ccgttcacac
      661 gccgagggcg cgattggcct gttcgattgc ggagaggccc gcaccttgcg cggccgcggc
      721 gcgctcgcgc tccaggttgc gttcgagctg gaccttggcc gcgcggtact gcttcggcca
      781 ttcgacgtcg gggtagccga tcttggccga ttccatcaag gtccaggccg gattcgcgag
      841 gtgcgggcgg gcgaccgcgc acaggtcggc gcggccggcg gcgatgatgc tgttgacgtg
      901 gtcggcttcc gagatcgcgc ccaccgcgat cgtcgcgatg ccggcctcgt tgcggatgcg
      961 atcggcgaac ggcgtctggt acatgcggcc gtacaccggc tgctggcgct tgctcacctg
     1021 gcccgacgag cagtcgatca ggtctgcgcc cgcggccttg aaggcgcgcg cgatctcgac
     1081 cgcgtcgtcc ggcgtgatgc cgccctcgac ccagtcgtgc gccgagatgc gcaccgagat
     1141 cggcaggtgc tgcggccaga cctggcgtgt cgcgtggaag atctcgagcg ggtagcgcag
     1201 gcggttggcg agcgagccgc cgtactcgtc ggtgcgctgg ttggtgagcg gcgagatgaa
     1261 ggacgacagc aggtagccgt gcgcgcagtg cagttcgagc cagtcgaagc cggcttgcgc
     1321 ggcgtagcgc gtcgcgcgca cgaagtcgtc gcgcacccgc tccatgtcgg cgcgcgtcat
     1381 cgcgcgcgac cagtcgctca cgccatcgag gtactgctgc ggcgacgccg aaacaagcgg
     1441 ccagttcccc tcggcaagcg gctggtcctc accctcccag ggcacgcgcg tcgagccttt
     1501 cgcaccggcg tgaccgagct gcatggcgat cttcgcgtcg ctgttggcgt gcacgaaatc
     1561 gacgatgcgc ttccaggcgt cgcgctgcgc tgcgttccac aggcccgggc aggcgggggt
     1621 gattcgcgcg tcgggtgtgg ggcaggtcat ctcggccacc accatgccgg cgccgccgag
     1681 cgcgcgcgcg cccaggtgga cgaggtggaa gtcgccggcg atgccgtcga cgcacgagta
     1741 ctgcgccatc ggcgagacga cgatgcggtt cttcagggtc gtaccacgcg ccgtgaacgg
     1801 cgtcagcatc ggcgggatcg agccgtgcgg cgcgactcgg tgcacccccg cctgctcggc
     1861 gatccagtcc tcgtagccct cgacgtagcc cttgtcgcgc aggcgcaggt tctcgtggct
     1921 gatg
//
LOCUS       DASVHM010000637         3353 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1199180, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000637 DASVHM010000000
VERSION     DASVHM010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1199180"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..364)
                     /locus_tag="VF308_11845"
     CDS             complement(<1..364)
                     /locus_tag="VF308_11845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein"
                     /protein_id="HEX7437394.1"
                     /translation="MTSSSRRRRNVPPPAGSTAAKASIYTRFIPREEISSFAAWDPGD
                     LSGARSAPDTAAPAADAAQRIDPAEHLAEQVRLARQSGYQDGYRDGLVALEGFKQSFA
                     HQATLQIGSLVQAIGAQLD"
     gene            complement(348..1343)
                     /gene="fliG"
                     /locus_tag="VF308_11850"
     CDS             complement(348..1343)
                     /gene="fliG"
                     /locus_tag="VF308_11850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020230935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009433 - bacterial-type flagellum basal
                     body, C ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEX7437395.1"
                     /translation="MDELGLENSAILLMSLGEEDAAEVLKHLTPKEVQGVGETIARMK
                     TIPRERMQNVLELFTTVAAEQCMFVGDTDEYVKAVLRKALGDDKANLLLDRILQGSDV
                     TGIEALKWMDAAAVAELLRNEHPQIVAAILVHLDYDQSSSVLKLLAERHRNEVIVRIA
                     TLDGIQPSALKDLNEVMSTLLTGGDRMRKSTLGGVKAAAEMLNLMGTSVETSVLDYIR
                     EADNELAQQIMDNLFTFDDLCKVDDKAIQSLLKEVQTESLVIALKGAAPELREKVFKN
                     MSTRAGETLREELESRGPVRVSEVESEQKEMLKVVRRLVEEGVIVLGGASDDQFV"
     gene            complement(1358..3025)
                     /gene="fliF"
                     /locus_tag="VF308_11855"
     CDS             complement(1358..3025)
                     /gene="fliF"
                     /locus_tag="VF308_11855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HEX7437396.1"
                     /translation="MDNAVALNSSLPMAVPASFTGRIMALPVRAKLSVALGLAALVGI
                     VLTLTLGASQGDYRILYASLSDKDGGAVTAQLSQMNVPYKVAPGGAILVPGAQVPDLR
                     LKMATAGLPKGSVFGYELMDSARFGQTQFQERLTFQRGLEGELTRSITSLAAVQNARV
                     HLALPNQNGFFREQQKPSASVLLSLHPGRTLDRAQVAGIVHLVSSSVPELDPKAVSVL
                     DQSGALLTGGGDAGQNAGLDAHQLQYVNQVETGYAKRIYELLEPIVGHDNLRATVAAD
                     IDFSQTEATSEEFKPNQGAEASVAIRSQQTTEQSGANGALPSGVPGAASNQPPLAATA
                     PLVGASQPLQAAPLAGGTANGRREAVTNYEVDKTVRVTRNASGTVKRLNAAVVVNNRA
                     VVDAKGKTTQVALTTEEIDKLTALVRESIGFKQDRGDSVKVINAPFKIETIAPIEVAW
                     WKQPDTLDLVRSLALPGALSVVALLVFFGLVRPGMKAILAAPRALPPGTKLNAVEDEP
                     TALPALAAPPRTNAQLDGARLMARENPAAVAGILRGWVGGEAAAAPR"
     gene            3028..>3353
                     /locus_tag="VF308_11860"
     CDS             3028..>3353
                     /locus_tag="VF308_11860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437397.1"
                     /translation="MLESCRGKGGAGMTTIIRRRGLAPCGEQPGKGASVRATARGGVA
                     YDDTRGSHFLAPEHSMNVTLKPFDFAQAAARAGLSPNGQPLQRGTGVEGTGFQQALGK
                     ALGAVN"
BASE COUNT          481 a         1142 c         1154 g          576 t
ORIGIN      
        1 cgtcgagctg cgcgccgatg gcttgcacca gagagccgat ctgcagcgtc gcctggtggg
       61 cgaagctctg cttgaaaccc tcgagcgcga ccagcccgtc gcgatagccg tcctggtagc
      121 ccgactgccg ggcgaggcgc acctgctcgg caagatgctc ggccggatcg atgcgctgcg
      181 ctgcgtcggc ggccggggct gccgtgtccg gtgccgacct cgcgccggac agatcgcccg
      241 gatcccaggc cgcgaacgaa ctgatctcct cgcgcggaat gaaacgcgtg tagatcgagg
      301 ccttcgcggc ggtcgagccc gctgggggcg gcacgttgcg gcgtcgccta gacgaactgg
      361 tcatcactgg cgcctccgag cacgatcacg ccttcctcga cgaggcggcg caccaccttg
      421 agcatttcct tctgttcgga ctcgacttcc gaaacccgca ccgggccgcg cgactcgagc
      481 tcttcgcgca gggtttcgcc ggcccgggtg gacatgttct tgaagacttt ctcgcgcaac
      541 tcgggcgcgg cgcccttgag cgcgatgacg agggactcgg tctgcacctc cttcagcagc
      601 gactggatcg ccttgtcgtc gaccttgcac aggtcgtcga aggtgaagag gttgtccatg
      661 atctgctggg ccagctcgtt gtcggcttcg cggatgtagt ccagcaccga ggtctcgacc
      721 gaggtgccca tcaggttgag catttcggcc gcggccttga ccccgccgag cgtcgacttg
      781 cgcatccggt cgccgccggt caggagggtc gacatgacct cgttcaggtc cttgagcgcc
      841 gaaggctgga tgccgtcgag cgtcgcgatg cgcacgatga cctcgttgcg gtggcgctcg
      901 gcgaggagct tcaacaccga cgaggactgg tcgtagtcga ggtgcaccag gatcgcggcg
      961 acgatctgcg gatgctcgtt gcgcagcagc tcggccaccg cggctgcatc catccacttc
     1021 agggcctcga tgcccgtcac gtcggagccc tgcaggatcc ggtcgagcag caggttggcc
     1081 ttgtcgtcgc cgagcgcctt gcgcagcacc gccttgacgt attcgtcggt atcgccgacg
     1141 aacatgcact gctccgccgc gaccgtggtg aacagttcca gcacgttctg catgcgctcg
     1201 cgcgggatcg tcttcatccg cgcgatcgtt tcgcccacgc cctgaacctc tttcggcgtc
     1261 aggtgcttca ggacttcggc ggcatcctcc tcgcccagcg acatgaggag gatcgcggaa
     1321 ttctccaggc ccagttcgtc catctcggtg gcccccttca tcgcggcgcc gcagcggctt
     1381 cgccgccgac ccagccacgc aggatgccgg ccaccgcggc ggggttctcc cgggccatca
     1441 ggcgggcgcc gtcgagttgc gcgttggtgc gcggcggtgc ggcgagggcc ggcagcgccg
     1501 tcggctcgtc ttcgaccgca ttgagcttcg tgccgggcgg cagcgcgcgc ggtgccgcga
     1561 ggatcgcctt catgccgggg cgcacgagtc cgaagaagac cagcagggcg acgaccgaaa
     1621 gggcccccgg cagcgcaagg ctgcgcacca ggtcgagcgt gtcgggctgc ttccaccacg
     1681 cgacttcgat cggcgcaatg gtctcgatct tgaacggcgc gttgatcacc ttgaccgaat
     1741 cgccgcgatc ctgcttgaag ccgatgctct cgcgcaccag cgcggtgagc ttgtcgatct
     1801 cctcggttgt cagcgccacc tgcgtcgtct tgcccttggc atcgacgacg gcgcggttgt
     1861 tgacgacgac cgcggcgttc agccgcttga cggtgccgct cgcattgcgt gtcacgcgca
     1921 cggtcttgtc gacctcgtag ttcgtcacgg cctcgcgccg gccgttggcc gtgccgccgg
     1981 cgagcggcgc tgcctgcagc ggctgcgagg cgccgacgag cggcgcggtg gcggcgagcg
     2041 gcggctggtt cgaggcggct ccgggcacgc cgctcggcag agcgccgttc gcgcccgact
     2101 gctcggtggt ctgctggctg cggatcgcga cgcttgcctc ggcgccctga ttgggcttga
     2161 attcctccga ggtcgcctcg gtctgcgaga agtcgatgtc ggcggcgacc gtggcacgca
     2221 ggttgtcgtg tccgacgatc ggctcgagca gctcgtagat gcgcttcgcg tagccggtct
     2281 cgacctggtt cacgtactgg agctgatggg cgtcgagccc ggcgttctgc ccggcgtcgc
     2341 cgccgccggt gaggagcgcg ccactctggt cgagcacgct caccgccttc ggatcgagtt
     2401 cgggcacgct cgacgagacc aggtgcacga tgccggccac ctgggcgcgg tcgagcgtgc
     2461 ggcccggatg caggctgagg agcaccgagg cgctcggctt ctgctgttcg cgaaagaacc
     2521 cgttctggtt cggcagggcg aggtgcacgc gcgcgttctg caccgccgcg agcgaggtga
     2581 tcgagcgcgt cagttcgcct tcgaggccgc gctggaacgt gagccgctcc tggaactggg
     2641 tctgcccgaa gcgggcgctg tccatcaatt cgtagccgaa gaccgagccc ttcggcaagc
     2701 cggccgtcgc catcttcagg cgcaggtccg gcacctgggc gccgggcacc aggatcgcgc
     2761 cgccgggcgc caccttgtac ggcacgttca tctgcgacag ctgggccgtc accgcgccac
     2821 cgtccttgtc ggagaggctg gcgtagagga tcctgtagtc gccctggctc gcgcccagcg
     2881 tcagcgtcag cacgatgccg acgagggcgg cgaggccgag cgcgacgctc agcttcgcgc
     2941 gcaccggcaa tgccatgatc cggccggtga aactggcggg caccgccatc ggaagcgagg
     3001 aattgagggc gacggcgttg tccatgaatg ctcgaatcct gccggggcaa gggtggtgcc
     3061 gggatgacga cgattattcg aagaagaggc ctcgcgccat gcggcgaaca gcccggcaaa
     3121 ggtgcgtcag ttcgcgccac cgcacgcggc ggcgttgcct acgatgacac ccgaggctcg
     3181 cacttcctcg ccccggagca ttcgatgaac gtcaccttga aacccttcga ctttgcccag
     3241 gccgcggcac gcgccggtct ctcccctaat ggccagccgc tgcaacgcgg caccggcgtc
     3301 gagggcaccg gcttccagca ggcgctcggc aaggcgctcg gcgcggtgaa caa
//
LOCUS       DASVHM010000638         7115 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_44748, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000638 DASVHM010000000
VERSION     DASVHM010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7115
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44748"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            51..1031
                     /locus_tag="VF308_11865"
     CDS             51..1031
                     /locus_tag="VF308_11865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015014200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7437398.1"
                     /translation="MTPTRRTLALGAAACAFATLTGPAFSQDKWPSKPITYIVPFPAG
                     GTTDVLARLIGQKLGPALGTTIVVDNKGGAGGSVGSEMAARAAPDGYTILGGTISSHA
                     INVSLYPKIGYDPIASFVPITLIGTNPTVLVVNQASPYKTLQDVIAAGKAKKPLTSAS
                     AGSGTSQHLSMELLKAKAGIDITHIPYKGSAPAIQDVMGGQVDMMFDTTVVAGPHIES
                     GKLRALAVTSAKRVPSMPNVPTVAESGVPGYEVVSWQAIFAPAGTPRPIVERLHAEIA
                     KILKEPEMQERLAKLGMQGADMTTDQITAFQKAEVAKWAQVIKSANIKLE"
     gene            complement(1018..2196)
                     /locus_tag="VF308_11870"
     CDS             complement(1018..2196)
                     /locus_tag="VF308_11870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfB/YjiJ family MFS transporter"
                     /protein_id="HEX7437399.1"
                     /translation="MGIGRFAFTPLLPMMLADGVVDLRTASWLASANYLGYLAGALLC
                     TFQPWIWARAKRLSPIDAPRLVRAGLVATGVLTLGMALPWPAAWPALRFGAGIASALV
                     FVYTSGWCLARLASQGASALGGAIYTGPGAGIVVSGFFVSGMVAWQWRAATGWLIFGV
                     LAFVLSAAVWPIFRSDPSTPAVAPAPAAAGAQAPGTRHGRTEIASLTLAYGLAGFGYI
                     VTATFLPVIAREALPGSPWLDFFWPIFGLGVIVGALLATRLRVSGDLRLLLAGGYVVQ
                     AAAIGASVWSPTLIGFALGSLMLGVPFTAITFFAMQEVRRLRPAHAASTMGLLTAMYG
                     IGQIVGPPLVALLLHRGRSAGAGFTLSLEIASGALLAGAAIYLAMSRAYPKGRPVTPA
                     "
     gene            complement(2425..3429)
                     /locus_tag="VF308_11875"
     CDS             complement(2425..3429)
                     /locus_tag="VF308_11875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016836305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HEX7437400.1"
                     /translation="MIVYVSNADSGDIAVLRLDAAGALAEVQRVPAGGAVMPLALSPD
                     RRFLHASIRSEPFSVRTFAIDPTTGQLAPIGAAPLPASMCWISTDRAGRFLLSASYGA
                     SLIAVSPIGADGVVRPAQQVLPTEPNAHAVQVDPSNRFLFATCLGGGAVMQQLFDAAT
                     GRVEPNDVPRLGLREGAGPRHFAFHPSAPFVYLLNELDAGIDVLAFDPERGRLRPLQT
                     VGTLPPGFSGAPWAADIHFRPDGRFLYSSERRSNTLAAFAVDARSGELSLVGHVATEA
                     QPRGFNVTPDGRFLLAVGQLSQRLSIYAIDARSGALRKLGDCPVGRNPNWIEIVDLRH
                     "
     gene            3542..4522
                     /locus_tag="VF308_11880"
     CDS             3542..4522
                     /locus_tag="VF308_11880"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX7437401.1"
                     /translation="MHYTKLGRTGLDVSRLCLGCMSYGVPERGNHPWSLDEAQSRPFL
                     RRALDLGINFFDTANVYSDGTSEEIVGRALLEYAPRRDLVIATKVQGRMRKGPNGAGL
                     SRKAILGEVDASLKRLGTDHVDLYQIHRWDYGTPIEETMEALHDVVKAGKARYIGASS
                     MFTWQFSKALHVAERHGWTRFATMQNYLNLLYREEEREMLPLCRAEGIGVIPWSPLAR
                     GRLTRDWDATSARSGTDSFGSTLYASTADADRKVVEALGAVAAKLGAPRAQVALAWVL
                     QQDGVSAPIVGATKLEQLDDAVAALAIRLTPEDIVALEAPYVPHAVVGFS"
     gene            complement(4565..5848)
                     /locus_tag="VF308_11885"
     CDS             complement(4565..5848)
                     /locus_tag="VF308_11885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0031317 - tripartite ATP-independent
                     periplasmic transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HEX7437402.1"
                     /translation="MDALVLIGSFFLLMIVGVPIAYSLGLASLLAALWIGLPLDAVMI
                     QIGSGVAKFSLLAIPFFVLAGAIMAEGGMARRLVAFASVLVGFMRGGLSLVNILASTF
                     FAGISGSAVADTASIGSALIPEMERKGYPRDFATAVTVSGSVQAIVLPPSHNSVIYSL
                     AAGGSVSIAALFMAGVLPGLLLGVILSILCIYKARKNNYPVGERIALRQALRICAEAM
                     WGVVTMVIILGGILTGVFTANESASIAVLWAFFVTMFIYRDYKWRELPKLIHRTVKTV
                     TIVMILIGFAASFGYLMTIMQIPLKVTEFFATVSQNKAVILLLINGMLLVLGCLMDMS
                     PLILICTPVLLPVVKSLGVDPVHFGMIMLLNLGIGLITPPVGTVLFVGSAIGGVKIGV
                     LVRAMVPFFVAMFVVLMMVTYIPALSLWLPRLLGL"
     gene            complement(5849..6418)
                     /locus_tag="VF308_11890"
     CDS             complement(5849..6418)
                     /locus_tag="VF308_11890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HEX7437403.1"
                     /translation="MTSAPDRPEAPATNSWVNRVLDPVYLASIWTAGIAILLMSLIIP
                     WGVFTRYVLGSGSQWPEPIAILLMMVFTFVGAAAAYRAGAHIAVTLLTDALPPALRRA
                     ASLLSDLLMVLVCAFVVYYGGRLCIATSGQSIGELPWLPVGVTYLPLPLGGALTLLFV
                     LERMALGSQSQRPLVRYEAPAAELPEGSD"
     gene            complement(6415..>7115)
                     /locus_tag="VF308_11895"
     CDS             complement(6415..>7115)
                     /locus_tag="VF308_11895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HEX7437404.1"
                     /translation="VGPIVPDVNVFNMPFVFRNEAHMRAVIDGPIGDEMLAKISASPV
                     KLVALGWMDGGSRSLYTKKPVRSIADLKGQKIRMIGNPLFVDTMNAMGGNGISMGYGE
                     VFSALQTGVVDGAENNPPSYFTSNHFATGAKYYTQTNHLIIPEIFVMSKITWDKLTPA
                     DQALVRKFSREAQFEQRELWDKSVGDYVAKLKAAGVEFIAIDNKPFYDATAPVRAKYG
                     AASAELIKRIEATR"
BASE COUNT         1324 a         2406 c         2438 g          947 t
ORIGIN      
        1 ttgagccgag agcccgccgc tgaagacgac ccgaacaaaa gggacacgcc atgacaccga
       61 cccgccgaac cctggccctt ggcgccgccg cgtgtgcgtt cgccacgctc accggtccgg
      121 ccttcagcca ggacaagtgg ccgtccaagc cgatcaccta catcgtgccg ttcccggcgg
      181 gcggcaccac cgatgtgctg gcccgactca tcggccagaa gctcggcccc gcgctcggca
      241 ccacgatcgt cgtcgacaac aagggcgggg ccggcggcag cgtgggctcg gagatggcgg
      301 cgcgcgccgc tcccgacggc tacacgattc tgggcggcac gatcagctcg catgcgatca
      361 acgtgagcct ctacccgaag atcggctacg acccgatcgc ctcgttcgtg ccgatcacgt
      421 tgatcggcac gaatccgacg gtgctggtgg tcaaccaggc gagcccctac aagaccctgc
      481 aggacgtgat cgccgccggc aaggcgaaaa agccgctgac ctcggcctcc gcgggcagcg
      541 gcacctcgca gcatctctcg atggagctcc tcaaggccaa ggccggcatc gacatcacgc
      601 acatcccgta caagggcagt gcgccggcga tccaggacgt gatgggcggg caggtcgaca
      661 tgatgttcga caccaccgtg gtcgcgggtc cgcacatcga aagcggcaag ctgcgcgcgc
      721 tcgccgtgac ctcggcaaag cgggtgccga gcatgcccaa cgtgccgacc gtcgccgaga
      781 gcggcgtgcc gggctacgaa gtcgtgtcgt ggcaggcgat cttcgcgccc gccggaacgc
      841 ccaggccgat cgtcgagcgc ctccacgccg agatcgcgaa gatcctgaag gagcccgaga
      901 tgcaggagcg tctggccaag ctcggcatgc agggcgccga catgaccacc gaccagatca
      961 ccgcgttcca gaaagccgag gtggcgaagt gggcgcaggt gatcaagagc gcgaacatca
     1021 agctggagtg acaggccgcc ccttcggata ggcgcggctc atcgccaggt agatcgcggc
     1081 accggcgagc aatgcgccag acgcgatctc gagcgacagc gtgaatccgg cgccggcgct
     1141 gcggccccgg tgcagcagca gcgccaccag cggcggtccg acgatctggc cgatgccgta
     1201 catcgcggtg agcaggccca tggtgctggc ggcgtgcgcc gggcgcaggc ggcgcacttc
     1261 ctgcatcgcg aagaacgtga tcgcggtgaa cggaacaccg agcatcaggc tgccgagcgc
     1321 gaagccgatg agggtcgggc tccagacgct cgccccgatg gccgcggcct gcacgacata
     1381 gccgccggcg agcagcaggc gcagatcgcc gctgacgcgc agccgcgtcg cgaggagcgc
     1441 cccgacgatc acgccgagcc cgaagatcgg ccagaagaag tcgagccacg gcgaaccggg
     1501 cagggcctcg cgggcgatca ccggcaggaa ggtcgcggtg acgatgtagc cgaacccggc
     1561 gagaccgtac gccagcgtga gactcgcgat ctcggtgcgc ccatgccgcg tcccgggcgc
     1621 ttgcgcgcct gcggccgccg gcgcgggcgc gacggccggc gtcgaggggt cgctgcgaaa
     1681 gatcggccac accgccgcac tgagcacgaa cgcgagcacc ccgaagatca gccaaccggt
     1741 cgcggcgcgc cactgccagg cgaccatgcc gctcacgaaa aagccgctga cgacgatgcc
     1801 tgcgccgggt ccggtgtaga tcgcaccgcc gagcgcgctc gcgccctggc tcgcgagtcg
     1861 agccaggcac cagcccgagg tgtagacgaa gaccagcgcg ctcgcgatgc cggcgccgaa
     1921 tcgcagcgcc ggccaggccg cgggccaggg cagcgccatg ccgagcgtca gtacaccggt
     1981 cgcgacgagg ccggcgcgca cgagccgcgg cgcgtcgatc ggcgacagcc gcttcgcgcg
     2041 cgcccagatc cacggctgaa aggtgcacag cagcgcacca gcgagatagc cgaggtagtt
     2101 cgcgctcgcg agccagctcg ccgtgcgcag atcgacaacg ccgtcggcca gcatcatcgg
     2161 cagaagcggg gtgaacgcga accggccgat gcccatcgcc accgcgagcg cgaccgcgcc
     2221 ggcgaaagcc acggcccagc gtctcgaagc gacgcggccg ggtgacgcgg gaagcgccgc
     2281 gcgtgcggtc acggcttgac cggcgccctc ggctggatgg tgccgctgtg ggccgagaaa
     2341 gctgcggaga agaggggcaa gactttcatc ggaactccgg ggggacaagt ggcgctctgg
     2401 gccgaagtct agggccgcgc acgttcagtg gcgaaggtcg acgatctcga tccagttcgg
     2461 attccgaccg accgggcaat cacccagctt gcgcagtgcg ccgcttcgcg catcgatcgc
     2521 gtagatgctg aggcgctgcg acaactgtcc gaccgcgaga agaaagcgcc catccggcgt
     2581 gacgttgaag ccgcgcggct gcgcctcggt ggccacgtga cccacgagcg agagttcgcc
     2641 cgagcgcgca tcgaccgcga acgcggcaag ggtgttgctg cggcgttcgc tgctgtagag
     2701 gaagcgcccg tcgggcctga agtggatatc ggcggcccaa ggtgcgccgc tgaagccggg
     2761 tggcagcgtg ccgacggttt gcagcggccg caatcggccc cgctccggat cgaacgccag
     2821 cacgtcgatg ccggcatcga gctcgttgag cagatagacg aacggcgcgc tcgggtggaa
     2881 ggcgaagtga cgcggccccg caccctcgcg caggccgagg cgcggcacgt cgtttggttc
     2941 gacgcggccg gtcgccgcat caaagagctg ctgcatcacg gcgccgccgc cgaggcaggt
     3001 cgcgaacagg aaacgattcg atggatcgac ctgcacggcg tgcgcattcg gctcggtcgg
     3061 cagcacctgc tgcgcgggcc ggaccacgcc gtccgcgccg atcgggctca ccgcaatcag
     3121 gctggcgccg tacgacgcgc tcagcaggaa gcgcccggcg cgatcggtgg agatccagca
     3181 catgctcgcc ggcagcggcg ccgcgccgat cggggcgagc tggcccgtcg tcgggtcgat
     3241 ggcgaaggtc cgcaccgaaa acggctcgga gcggatcgac gcatggagga agcgccggtc
     3301 cggactcagc gcgagcggca tcacggcgcc cccggccggc acgcgctgaa cttcggccag
     3361 cgcgcctgcg gcgtcgagcc gcagcaccgc gatatcgccg ctgtcggcgt tcgaaacgta
     3421 gacgatcaca agccctcgcg acgcgccctc acagaccgag caggcacggt ccgaagttta
     3481 cggggcgacg cgatacgcgg taggctcccc ggacacaccg tcccgatcct ggccgcacac
     3541 catgcactac accaaactcg gccgcaccgg cctcgacgtc tcacgcctgt gcctcggctg
     3601 catgagctac ggcgtgccgg aacgcggcaa ccacccctgg tcgctggacg aagcgcagag
     3661 ccgaccgttc ttgcggcgcg ccctcgacct gggcatcaat ttcttcgaca ccgcgaacgt
     3721 ctactcggat ggcaccagcg aagagatcgt cggtcgggcc ctgctcgaat acgcgccgcg
     3781 ccgcgacctg gtgatagcga ccaaggtgca gggtcgcatg cgcaagggcc cgaacggcgc
     3841 ggggctttca cgcaaggcca tcctcggcga ggtcgacgcg agcctgaagc gactcggcac
     3901 cgaccatgtc gacctgtacc agatccatcg ttgggactac ggcacgccga tcgaagagac
     3961 gatggaggcg ctgcacgacg tggtcaaggc gggcaaggcg cgctacatcg gcgcctcgtc
     4021 gatgttcacg tggcagtttt cgaaagcgct gcacgtcgcc gaacggcacg gctggacgcg
     4081 ctttgcgacg atgcagaact acctgaacct gctctaccgc gaagaggagc gcgagatgct
     4141 gccgctgtgc agggccgaag gcatcggcgt gattccgtgg agcccgctcg cgcgcgggcg
     4201 cctgacgcgc gactgggatg cgacgagcgc gcgctccggg accgattcgt tcgggagcac
     4261 gctctatgcc agcactgccg atgccgaccg caaggtggtg gaggcgctcg gcgcggtcgc
     4321 cgccaaactc ggcgcgccga gagcccaggt cgcgctcgcc tgggtgctgc agcaggacgg
     4381 cgtgagcgca ccgatcgtcg gcgcgaccaa gctcgagcag ctcgacgacg cggtcgccgc
     4441 gctcgcgatc aggctcacgc ccgaagacat cgtcgcactc gaagctccct atgttccaca
     4501 cgcggtggtc gggttctcct gaacggatgg gttgagggca ggtcgacggc cggatcaccc
     4561 gcgttcacag gccgagcaag cgcggcagcc acagcgacag ggccgggatg taggtgacca
     4621 tcatcagcac gacgaacatc gcgacgaaga acggcaccat cgcgcgcacg agcacgccga
     4681 tcttgacgcc gccgatcgcg ctgccgacga acagcaccgt gcccaccggc ggcgtgatca
     4741 ggccgatgcc caggttgagc agcatgatca tgccaaagtg caccggatcg acgccgagcg
     4801 acttgaccac cggcagcagc accggcgtgc agatcaggat cagcggcgac atgtccatca
     4861 ggcagccgag caccagcaac atgccgttga tgaggagcag gatcaccgcc ttgttctggg
     4921 agacggtggc gaagaattcg gtgaccttca gagggatctg catgatcgtc atcagatagc
     4981 cgaagctcgc cgcgaagccg atcaggatca tcacgatcgt gaccgtcttg acggtgcggt
     5041 ggatcagctt cggcagctcg cgccacttgt agtcacggta gatgaacatc gtgacgaaga
     5101 acgcccagag caccgcgatc gacgccgact cgttggccgt gaacacgccc gtcaggatgc
     5161 cgccgaggat gatgaccatc gtgaccacgc cccacatcgc ctcggcgcag atgcgcaagg
     5221 cctggcgcag cgcaatccgc tcgccgacgg ggtagttgtt cttcctggcc ttgtagatgc
     5281 acaggatcga gagaatcacc ccgagcagca ggccgggcag cacgccggcc atgaacagcg
     5341 cggcgatcga gacgctgccg cccgcggcga gcgagtagat caccgagttg tggctgggcg
     5401 gcagcacgat cgcctggacc gagccgctga cggtgaccgc ggtcgcgaaa tcgcgcggat
     5461 agcctttcct ttccatctcg ggaatgagcg ccgagccgat cgacgcggtg tcggccaccg
     5521 ccgagccgga aatgccggcg aagaacgtcg aggcgaggat gttgacgagc gaaagtccgc
     5581 cgcgcatgaa gcccaccagc acgctcgcga acgccaccag gcgccgcgcc atgccgcctt
     5641 cggccatgat ggcgccggcg agcacgaaga acgggatcgc gagcagcgag aacttggcga
     5701 cgcccgagcc gatctggatc atcaccgcgt cgagcggcaa gccgatccag agggccgcga
     5761 gcagcgatgc aagaccgagc gaataggcga tcgggacgcc gacgatcatc agcaggaaga
     5821 agctcccgat cagcaccaac gcgtccattc aatcgctccc ttccggcagt tcggcggcgg
     5881 gtgcctcgta acgcacgagg ggacgctggc tttgcgaacc gagggccatg cgctcgagca
     5941 cgaagaggag cgtcaacgcg ccgccgagcg gcagcggcag gtaggtgacc ccgaccggca
     6001 gccagggcag ttcgccgatc gactggcccg acgtggcgat gcacagccgc ccgccgtagt
     6061 agacgacgaa cgcacagacc aggaccatca gcaggtcgct cagcagcgac gcggctcggc
     6121 gcagcgccgg cggcagcgca tcggtcagca gcgtcacggc aatgtgggcg ccggcccggt
     6181 acgcggccgc cgcgccgacg aaggtgaaca ccatcatcag caggatcgcg atcggctcgg
     6241 gccactgcga gccggaaccg agcacgtagc gcgtgaagac gccccaggga atgatcagcg
     6301 acatcagcag gatcgcgatg ccggcggtcc agatgctggc cagatagacc gggtccagaa
     6361 cccggttgac ccaggagttc gtggccggcg cttccggccg gtccggcgcg ctggtcaccg
     6421 ggtcgcttcg atgcgcttga tcagctcggc agacgctgcg ccatacttcg cacgaaccgg
     6481 cgcggtcgcg tcgtagaacg gcttgttgtc gatggcgatg aattcgacgc ccgccgcctt
     6541 cagcttggcc acatagtcgc cgacgctctt gtcccacaac tcgcgctgct cgaactgggc
     6601 ttcgcgcgag aacttcctca ccagcgcctg gtcggccggc gtcagcttgt cccaggtgat
     6661 cttcgacatc acgaagatct ccgggatgat gaggtggttc gtctgcgtgt agtacttcgc
     6721 tccggtggcg aagtggttcg aggtgaagta gctcggcggg ttgttctcag caccgtcgac
     6781 cacgccggtc tgcagggcgc tgaacacctc gccgtagccc atcgagatgc cgttgccgcc
     6841 catcgcgttc atggtgtcga cgaagagcgg attgccgatc atgcggatct tctggccctt
     6901 gaggtcggcg atcgagcgca ccggcttctt ggtgtagagg ctgcgcgagc cgccgtccat
     6961 ccagcccagc gccaccagct tgaccggaga ggcgctgatc ttggccagca tctcgtcgcc
     7021 aatcggcccg tcgatcaccg cgcgcatgtg tgcctcgttg cggaagacga acggcatgtt
     7081 gaagacgttg acgtcgggaa cgatcgggcc gacag
//
LOCUS       DASVHM010000639         1934 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1346563, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000639 DASVHM010000000
VERSION     DASVHM010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1346563"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..858
                     /locus_tag="VF308_11900"
     CDS             <1..858
                     /locus_tag="VF308_11900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007877212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7437405.1"
                     /translation="RVDSLDALLNIPVGNSGAANSPTQLLGNLVEARPGRSLAIVSRY
                     NILPAIDVYVSVQGKDLAHIADKVKEQVGQIRSKLSRGSEVTIRGQVQTMQASFVGLL
                     TGLAMAIVLVYLLIVVNFQSWIDAAIIVAALPAALAGIAWMLFITGTTLSVPALTGAI
                     MTMGVATANSILVIAFARQRQQDGVPALSAALEAGATRIRPVLMTALAMIIGMIPMAL
                     GVGEGAEQNAPLGRAVIGGLLFATVSTLFFVPVVFAGVHQRLARRKAARAALSTGPRE
                     PVGRPLQET"
     gene            863..>1934
                     /locus_tag="VF308_11905"
     CDS             863..>1934
                     /locus_tag="VF308_11905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006461171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX7437406.1"
                     /translation="MTEQRHSALGIHPIDASEEGGDPGELLKRRQVVRRTKILAVVVL
                     VLLVLGAGRTVVSRMANARMLEAGASEHAIQYVKTTTPMASDAAQDVVLPGTLQGFVQ
                     APIAARSSGYLKRWTKDIGSRVAKGELLAEIESPEVDQQLSQAVAARQQAASSLDLAK
                     STVARWEGLRKQDVVSQQELDERRSGVAQATANLAAAEANVQRLRQLEGFKRVVAPFA
                     GVITRRNVDVGDLIDAGGGAGRTLFQLAQTDPLRVYVNVPQAYAQLVKPGQPVVVTQA
                     ELRGQKFKGQVARTSASIDSSTRTMQVEIALPNREGTLLPGAYVQVALPLAASQALAV
                     PTNALLFRGDGTRVAIVDAQGRV"
BASE COUNT          299 a          653 c          684 g          298 t
ORIGIN      
        1 cgcgtcgatt cgctggatgc gctgcttaac ataccggtcg ggaatagtgg cgccgccaac
       61 agtcccacgc aactgctcgg taatctcgtc gaggcgaggc cgggtcgcag tctcgcgatc
      121 gtgtcgcgct acaacattct gccggccatc gatgtctatg tgagcgtgca gggaaaggac
      181 ctcgcgcaca tcgcggacaa ggtcaaagag caggtcggcc agatccgttc caagctctcg
      241 cgcggcagcg aagtcacgat acgcggccag gtgcagacca tgcaggcgtc cttcgtcggc
      301 ctgcttaccg ggctggcgat ggcgattgtg ctggtctacc tgctgatcgt cgtcaatttc
      361 cagtcgtgga tcgatgccgc gatcatcgtc gccgcattgc cggcggcgct cgccggcatc
      421 gcctggatgc tcttcatcac cggcaccacg ctctcggttc cggcgctgac cggcgcgatc
      481 atgacgatgg gcgtggccac cgcgaacagc atcctggtca tcgcgttcgc gcgccagcgc
      541 cagcaggacg gcgtgccggc gctgtcggcc gcgctcgagg ccggcgcgac ccggatccgc
      601 ccggtcctga tgacggcgct ggcgatgatc atcggcatga tcccgatggc cctcggcgtc
      661 ggcgaaggcg ccgagcagaa tgcgccgctc ggtcgggcgg tcatcggcgg gctcctgttc
      721 gcgacggttt cgacgctctt cttcgtgccg gtggtgttcg ccggcgtgca ccagcgcctg
      781 gcccgccgca aggccgctcg cgccgcgctc tcgaccggtc cgcgcgagcc ggtcggcaga
      841 ccgcttcagg agacctgagg tcatgaccga acagcgccat tcggcattgg gcatccaccc
      901 gatcgacgcg agcgaggagg gcggcgaccc cggcgaactg ctgaagcgcc gccaggtcgt
      961 gcgccgcacc aagatcctcg cggtcgtggt gctggtgctg ctcgtgctcg gcgccgggcg
     1021 cacggtggtc agccggatgg cgaatgcgcg gatgctggag gccggcgcaa gcgaacacgc
     1081 gatccagtac gtgaagacga cgacgccgat ggcgagcgac gcggcccagg acgtcgtcct
     1141 gcccggcacg ctgcagggct tcgtgcaggc tccgatcgcg gcgcgttcga gcggctacct
     1201 gaagcgctgg accaaggaca tcggcagccg tgtcgcaaag ggcgaattgc tcgccgagat
     1261 cgagtcgccg gaagtcgacc agcaactgtc gcaggccgtc gcggcgcgcc agcaggcggc
     1321 ctcgagcctc gatctcgcga agagcaccgt cgcgcgctgg gaagggctgc gcaagcagga
     1381 cgtggtctcg cagcaagagc tcgacgaacg ccgcagcgga gtcgcccagg ctaccgcgaa
     1441 cctggcggcc gccgaggcga acgtgcagcg gctgcgccag ctcgaaggct tcaagcgggt
     1501 cgtggcaccg ttcgcaggcg tgatcacgcg ccgcaatgtc gatgtcggcg acctgatcga
     1561 cgccggcggc ggggccggcc gcacgctgtt ccagctcgcc cagaccgatc ccctgcgcgt
     1621 ctacgtcaac gtgccacagg cgtatgcgca gctggtcaag ccggggcagc cggtcgtcgt
     1681 cacgcaggcc gagttgcgcg gccagaagtt caagggccag gtggcgcgca cctcggcgtc
     1741 gatcgactcg agcacgcgca cgatgcaggt cgagatcgcg ctgcccaatc gcgagggcac
     1801 gctgcttccc ggcgcgtatg tgcaggtcgc gctgccgctg gcggcgagcc aggcgttggc
     1861 ggtgccgacc aacgcgctcc tttttcgcgg cgacggcacg cgcgtggcga tcgtcgacgc
     1921 gcagggtcgg gttc
//
LOCUS       DASVHM010000640         1569 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_839551, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000640 DASVHM010000000
VERSION     DASVHM010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_839551"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1164)
                     /locus_tag="VF308_11910"
     CDS             complement(<1..1164)
                     /locus_tag="VF308_11910"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX7437407.1"
                     /translation="MLDRRSYTLARFRFSQRAERSRRYRADLLKWTEVMAEPELVGDI
                     PEPENGPGDENTEGSSIGDIDDLVAAGRDRGYVLIEEIETQIDAVLTADQIQELRTDL
                     TEQGIDLVGAADAPSEVETESKASVPKAKAKAAQDEYMADASVDSLRLYLRSIGRVDL
                     LTAEQEVELAKRIERGDDSAKQHMVEANLRLVVSIAKNHVGRGLTLLDLIQEGSLGLI
                     RAVEKFDYRRGYKFSTYATWWIRQAVSRAVADKARTIRIPVHMVERLNTITNMERQLV
                     QKLGREPEPHEIAAELKWSVSEVRELMRFSQQPISLEKSVGDQEDSELIDLVEDKTAE
                     SPDEAAAESIQRETVWRALSMLSDRDRRVIEMRYGLDGRKPATLDEVATELGLT"
BASE COUNT          237 a          534 c          503 g          295 t
ORIGIN      
        1 cgtgaggcca agctcggtcg ccacctcgtc gagcgtcgcc ggcttgcggc cgtcgaggcc
       61 gtaacgcatc tcgatcacgc gacggtcgcg gtcgctcagc atcgagagcg cgcgccaaac
      121 ggtctcgcgc tggatgctct cggcggcggc ctcgtcgggc gactcggcgg tcttgtcttc
      181 gaccaggtcg atcagctcgc tgtcttcctg gtcgccgacc gacttctcga gcgagatcgg
      241 ctgctggctg aaacgcatca gctcgcgcac ctcgctgacc gaccacttca gctcggcggc
      301 gatctcgtgc ggctccggct cgcggccgag cttctgcacg agctggcgct ccatgttggt
      361 gatcgtgttc agccgctcga ccatgtgcac ggggatacga atcgtgcgcg ccttgtcggc
      421 gaccgcgcgg ctgacggcct ggcggatcca ccaggtcgcg taggtggaaa acttgtagcc
      481 gcggcggtag tcgaacttct cgaccgcgcg gatcaagcca agcgagccct cctggatcag
      541 gtcgagcagc gtcaggccac ggccgacgtg gttcttggcg atgctcacga cgagccgcag
      601 gttggcctcg accatgtgct gcttggcgct gtcgtcgccg cgctcgatgc gcttggccag
      661 ctcgacctcc tgctcggcgg tcaacaggtc gacgcggccg atcgaacgca ggtaaagacg
      721 cagcgaatcg acgctcgcgt cggccatgta ctcgtcctgg gcggccttcg ccttggcctt
      781 cggcaccgac gccttggact cggtctcgac ctcgctcggc gcgtcagcgg cgccgaccag
      841 atcgatgccc tgctcggtga gatcggtgcg cagttcctgg atctgatcgg ccgtcagtac
      901 ggcgtcgatc tgcgtctcga tctcctcaat cagcacgtag ccgcggtcgc ggccggcagc
      961 gaccaggtca tcgatgtcgc caatgctcga accctcagtg ttttcatccc cgggaccgtt
     1021 ttccggttca gggatatcgc ctacgagttc cggctcagcc atgacttctg tccatttcag
     1081 taaatccgct ctatagcggc gggatcgctc cgcccgctgt gaaaatcgaa acctagcaag
     1141 agtgtaggac cgcctgtcta gcacggcaac gcccctggaa ataagcttgt tttgtggtgg
     1201 acaatgcggc cgccggcgag tcgtgggggg gccgcgggcg ccgcgccggc gtgttcgagg
     1261 ttcggcgcat cgtccttttc ataccgctat cgtcggactt atgaacgcac ctggcgaggg
     1321 ccccaccacc gccacgccgc cggtttcggc ctccggcgcc gcctcaggca tgcctggcac
     1381 gccgaacgcg cccgctccgc ggcgcgacgt tcagtccgaa cgaccgcgcg tgatggcgac
     1441 gctctcgcgc gtcggcgtga cgaacgtcga gaagatcgtg cgcatcgccg acgacggcgt
     1501 cgagaacctg ttctacgcca agctcaactg cttcgtcgac ctggccgccg cgcagaaggg
     1561 cgtgcacat
//
LOCUS       DASVHM010000641         1631 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1056597, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000641 DASVHM010000000
VERSION     DASVHM010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1056597"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..280
                     /locus_tag="VF308_11915"
     CDS             <1..280
                     /locus_tag="VF308_11915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX7437408.1"
                     /translation="ADAIAKANDIDYGLSSYVWTRDIGRAHRVAAAVEAGMCFVNSQN
                     VRDLRQPFGGTKASGTGREGGTWSYEVYCEPKNVCVSLTDHHIPRWGL"
     gene            284..610
                     /locus_tag="VF308_11920"
     CDS             284..610
                     /locus_tag="VF308_11920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012202043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-opening dioxygenase subunit LigA"
                     /protein_id="HEX7437409.1"
                     /translation="MSLYATQKLLFHLNRDAGVQKRYRDDLDRLLDDYELDVEEREAI
                     VAGDVGKLYVLGSNGQLLMHFAALLGMPWADYIEAMRDGVRRHGPVRAGVYAMTTSTD
                     EKVAGV"
     gene            607..1425
                     /locus_tag="VF308_11925"
     CDS             607..1425
                     /locus_tag="VF308_11925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019658001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extradiol ring-cleavage dioxygenase"
                     /protein_id="HEX7437410.1"
                     /translation="MSLVFAAACSHAPGVTGRAHLAEPVLRDAFHAEFRGLGESLAAS
                     RPDALVIVAAEHFANFFMDNMPAYAIGMADHYDGPIEDPGWLGIAKTRIPGNAALSRR
                     LIEDVMHDVDVAFCEEWKFDHGIMVPLHFLTPRFDLPVIPANINCQGPPLTPLHRAWA
                     FGAALRRACDAAPERIALVGTGGISHWPATPDSGKINEAWDREFLDRWSRQDKAAMLS
                     YSDEATYRDAGQGGFEIRTFVATAAAARGAGAVRFYAPIPIFSVGCTVALMAVE"
     gene            1436..>1631
                     /locus_tag="VF308_11930"
     CDS             1436..>1631
                     /locus_tag="VF308_11930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate isomerase"
                     /protein_id="HEX7437411.1"
                     /translation="MPHVTIQYTANLDPEAKIGVLCATLAEVICAQRDGAGERVFPVG
                     GTRVLAYPAATFAVADGAPDR"
BASE COUNT          256 a          585 c          539 g          251 t
ORIGIN      
        1 ggccgacgcg atcgcgaagg ccaacgacat cgactatggc ctgtcgagct acgtctggac
       61 acgcgacatc ggccgcgcgc atcgcgtcgc cgccgccgtc gaggccggca tgtgcttcgt
      121 caacagccag aacgtgcgcg acctgcgcca gcccttcggc ggcaccaagg cctcgggcac
      181 ggggcgtgaa ggcggcacct ggagctacga ggtgtactgc gagccgaaga acgtgtgcgt
      241 ctcgctgacg gaccatcaca tcccgcgctg gggcctctga gccgtgagcc tgtacgccac
      301 gcaaaagctg ctgttccacc tcaaccgcga tgccggcgtg cagaagcgct atcgcgacga
      361 cctcgaccgc ctgctcgacg attacgagct cgacgtcgag gagcgcgagg cgatcgtcgc
      421 cggcgacgtc ggcaagctct acgtgctcgg ctccaacggc cagctgctga tgcatttcgc
      481 cgcgctcctc ggcatgccct gggccgacta catcgaagcg atgcgcgacg gcgtgcgtcg
      541 gcatggcccg gtgcgtgccg gcgtctacgc gatgacgacg tcgaccgacg agaaggtcgc
      601 cggggtgtga gcctggtctt cgcggccgcg tgcagtcacg cccccggcgt gaccggccgc
      661 gcgcatctcg ccgagcccgt cctgcgcgac gccttccacg ccgaatttcg cggcctcggc
      721 gagtcgctcg cggcgagccg gcccgatgcg ctcgtgatcg tcgccgccga gcacttcgcg
      781 aacttcttca tggacaacat gcccgcctac gcgatcggca tggccgacca ctacgacggg
      841 ccgatcgagg acccgggctg gctcggcatc gcaaagacgc gcatcccggg caacgcggcg
      901 ctctcgcgtc gactgatcga agacgtcatg cacgacgtcg acgtcgcctt ctgcgaagag
      961 tggaagttcg atcacggcat catggttccg ctgcacttcc tgacgccgcg cttcgacctg
     1021 cccgtgatcc ccgcgaacat caactgccag gggccgccgc tcacgccgct gcatcgcgcc
     1081 tgggcgttcg gcgcggcctt gcggcgagcc tgcgatgcgg cacccgagcg catcgccctc
     1141 gtcggtaccg gcggcatctc gcactggccg gcgacgcccg actcgggcaa gatcaacgaa
     1201 gcgtgggacc gcgaatttct cgaccgctgg tcgcgtcagg acaaggcggc gatgctgtcg
     1261 tacagcgacg aagcgaccta tcgcgatgcc ggccagggag gcttcgagat ccgcaccttc
     1321 gtcgccaccg cggcggcggc gcgcggcgcc ggcgcggttc gcttctatgc gccgattccg
     1381 atcttctcgg tcggctgcac ggttgcgctg atggccgtcg aataaaggga ccacgatgcc
     1441 ccatgtcacg atccagtaca ccgccaacct cgaccccgag gcgaagatcg gcgtgctctg
     1501 cgcaacgctt gccgaagtga tctgcgcaca gcgcgacggc gccggtgaac gcgtgttccc
     1561 ggtcggcggc acgcgcgtgc tcgcctatcc ggcagcgacc ttcgcggtgg ccgacggcgc
     1621 gcccgatcgc g
//
LOCUS       DASVHM010000642         2389 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_695733, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000642 DASVHM010000000
VERSION     DASVHM010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_695733"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..983)
                     /locus_tag="VF308_11935"
     CDS             complement(<1..983)
                     /locus_tag="VF308_11935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEX7437412.1"
                     /translation="MKPIWIVDDDQSIRFVLEKALTREEFAVRSFTNSRDVLAALEDD
                     EPQVLVSDIRMPGGSGIDLLNKIKAKHRELPVIIMTAYSDLDSAVSAFQGGAFDYLPK
                     PFDVPKAVDLIRRAVEESLQESTSESPAAQVPEILGQAPAMQDVFRAIGRLSQSIVTV
                     LITGESGSGKELVANALHKHSPRASGPFVAINTAAIPKDLLESELFGHERGAFTGAQT
                     TRRGRFEQADGGTLFLDEIGDMPFDLQTRLLRVLADGQFYRVGGHNPMKSNVRVIAAT
                     HQDLEQRVKAGAFREDLFHRLNVIRLRLPALRERTEDIAPLARFFLQKSAR"
     gene            complement(1092..2177)
                     /gene="glnL"
                     /locus_tag="VF308_11940"
     CDS             complement(1092..2177)
                     /gene="glnL"
                     /locus_tag="VF308_11940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006578618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(II)"
                     /protein_id="HEX7437413.1"
                     /translation="MIAPASPPAPTSQAAAQAALDLLATMVAVITPEGECEFVNSSFE
                     TVLGLSRRSMTRSVVFDWFTDPQVLRETVAAVSNNAFSTSRLETFLKRPSGESLPVHV
                     TVNQIDGSRNVVFEIVEIEQQNRQEREERALEQAEATKELIRNLAHEIKNPLGGIRGA
                     AQLLEMEIESRALTEYTQVIIKEADRLQLLVDRLLAPHRKPHVVGNVNIHEVCERVRA
                     LILAEFPRGLATVRDYDTSIPEFSGDREQLIQAVLNIARNAAESLAELIELGTARITL
                     RTRVVRQVTLGKHRYRLALELHIEDNGPGIPDTLRERIFFPLVSGREGGSGLGLTLAR
                     TFIQQHHGTVEFESEPGRTIFKIVIPL"
     gene            complement(2174..>2389)
                     /locus_tag="VF308_11945"
     CDS             complement(2174..>2389)
                     /locus_tag="VF308_11945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437414.1"
                     /translation="ILEAELKGEEDRLAALKKEFNNGQPERQGDEKNFQKYLDRVNDM
                     RAAIARKLTDIAALQREIKKLPPPLPQ"
BASE COUNT          350 a          759 c          850 g          430 t
ORIGIN      
        1 tcgcgcgcgc tcttctgcaa gaagaagcgc gccagcggcg cgatgtcctc ggtgcgctcg
       61 cgcaacgccg gcagccgcag gcgaatgacg ttgaggcgat ggaacaggtc ttcgcggaag
      121 gcgcccgcct tgacgcgctg ctcgaggtcc tggtgcgtcg ccgcgatgac gcggacgttg
      181 ctcttcatcg ggttgtggcc gccgacgcga tagaactggc cgtcggcgag gacgcgcaag
      241 aggcgtgtct gcaggtcgaa cggcatgtcg ccgatctcgt cgaggaagag cgtgccgccg
      301 tcggcctgct cgaagcggcc gcgccgcgtc gtctgcgcgc cggtgaaggc gccgcgctcg
      361 tggccgaaca gctccgactc gagcaggtcc ttcggaatcg ccgccgtgtt gatggcgacg
      421 aacgggccgc tcgcgcgcgg gctgtgcttg tgcagcgcgt tggcgacgag ctccttgccc
      481 gagcccgact cgccggtgat gaggaccgtg acgatgctct ggctgagccg cccgatggcg
      541 cgaaagacgt cctgcatcgc cggcgcctgg ccgaggatct cgggcacctg cgcggccggc
      601 gactcgctcg tcgattcctg caggctctcc tcgacggcgc ggcggatcag gtcgaccgcc
      661 ttgggcacgt cgaagggctt gggcaggtag tcgaaggcgc cgccctggaa cgcgctgacg
      721 gcgctgtcga ggtcggagta ggcagtcatg atgatgaccg gcagctcgcg gtgcttggcc
      781 ttgatcttgt tgagcaggtc gatccccgag ccgccaggca tgcggatgtc ggagacgagc
      841 acctgcggct cgtcgtcctc gagcgcggcg aggacgtcgc gcgagttcgt gaagctgcgc
      901 acggcgaact cctcgcgcgt caaggccttc tcgagcacga agcggatcga ttggtcgtcg
      961 tcgacgatcc agatgggttt catccgattt ggcgtcggtt cgacgagacg caacgcccgc
     1021 tgggccgccc caagggcgtt gccgcccccg cggggggcag cgaacgaagt gaggcgcctt
     1081 cgggcttcat gtcaaagggg gatgacgatc ttgaagatcg ttcgtcccgg ctcgctttcg
     1141 aactcgacgg tgccatggtg ctgctggatg aatgttcttg cgagcgtgag accgagaccg
     1201 gatccgcctt cgcggcccga cacgagcgga aagaagatcc tctcgcgcag cgtatccgga
     1261 atgcccggcc cgttgtcctc gatatgcaat tccagtgcca gacgatagcg gtgcttgccg
     1321 agggtcacct ggcggacgac gcgggtccgc aaggtgatcc gcgccgtgcc aagctcgatc
     1381 aactcggcga gcgattcggc ggcattgcgg gcgatgttga gaaccgcctg gatgagctgc
     1441 tcgcggtcgc cgctgaattc ggggatcgag gtgtcgtagt cgcgaacagt ggccaggccg
     1501 cgcgggaact cggccaggat cagcgcccgc acccgctcgc acacctcgtg gatgttgacg
     1561 ttgccgacga cgtggggctt cctgtgcggc gcgagcaggc ggtcgacgag cagctgcagc
     1621 cggtcggcct ccttgatgat cacctgcgtg tactcggtga gcgcgcgcga ctcgatctcc
     1681 atctcgagca gctgcgcggc gccacggatg ccaccgagcg gattcttgat ctcgtgggcg
     1741 aggttcctga tcagctcctt ggtcgcctcg gcctgctcga gcgcccgctc ctcgcgctcc
     1801 tggcggttct gctgctcgat ctcgacgatc tcgaagacga cgttgcgcga gccgtcgatc
     1861 tggttgaccg tcacgtgcac cggcagcgac tcgcccgagg ggcgcttcag gaaggtctcg
     1921 agccggctgg tcgaaaaggc gttgttgctg accgcggcga cggtttcgcg cagcacctgc
     1981 ggatcggtga accagtcgaa gacgacgctg cgcgtcatgc tgcgccgcga cagcccgagc
     2041 acggtctcga acgaggagtt gacgaactcg cattcgcctt cgggcgtgat gacggcgacc
     2101 atcgtcgcca gcaggtcgag ggccgcctgc gcggccgcct ggctggtggg cgccggcggc
     2161 gatgcgggag cgatcactgc ggcagcggcg gcggcagctt cttgatctcg cgctggagcg
     2221 cggcgatgtc ggtcagcttg cgagcgatcg cggctcgcat gtcgttgacg cggtcgaggt
     2281 acttctggaa gttcttctcg tcgccctgcc gctcgggctg gccgttgttg aattccttct
     2341 tcagcgccgc cagccggtct tcttcgccct tgagctcggc ctcgaggat
//
LOCUS       DASVHM010000643         2826 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1129448, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000643 DASVHM010000000
VERSION     DASVHM010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1129448"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..959)
                     /locus_tag="VF308_11950"
     CDS             complement(<1..959)
                     /locus_tag="VF308_11950"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEX7437415.1"
                     /translation="MQQTTGGSCAAAKGPSARAAGRRRSARPASLDSGGDFVVGLLVP
                     INGSAGIWGPSSIACAQLAQAEINAAGGLLDRQLRLRVIDSSDEALEVGSVTAELMHS
                     GAIDAIVGMHTSQVRQRVLRDVARQIPYVYTPLYEGGERTPGVFALGETPEQQLRPAI
                     EYLIERYGARRWMFIGNDYVWPRVSHRLAARYVSDRGGELLGDRYLPFGAEDYTALLD
                     EIRRLRPHAILLSLVGQDAIHFNRAFGSCGLSRDVFRLSCAIEENGLLAIGADNTDGL
                     FVSAGYFASLDNDANMAFKERYYNHFGQRAPTLNALGQSTYEGV"
     gene            1052..1486
                     /locus_tag="VF308_11955"
     CDS             1052..1486
                     /locus_tag="VF308_11955"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX7437416.1"
                     /translation="MSRFEPHLSLLLERASRVVGDRLSTSIGLEGITSDHWRVLRHLA
                     DGAGHTMGEIADRLEMNPPTLTKLIDRMVGKSLVQRAADPEDSRRVLVYATDAGPELL
                     QELQSKVDQHHAALRTLLGERNARQLERLLTMLIDASDRPAA"
     gene            complement(1507..>2826)
                     /locus_tag="VF308_11960"
     CDS             complement(1507..>2826)
                     /locus_tag="VF308_11960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013800959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX7437417.1"
                     /translation="LTREMLRRIERLDPDLKSYARVTPELALEQARAAEQMIGRRQIL
                     AQLHGVPIAVKDLCFTKGVVTAAGMPLHRDFVPGFDATVVTRLREAGAILLGKLQLTE
                     GAFADHHPDITPPRNPWHHDHWSGASSSGSGVATAAGLCFGSLGSDTGGSIRFPSAAN
                     GNTGLKPTWGRVSKYGCFELAASLDHIGPMCRSAADAAIVLGAIAGVDPHDPTTLRAD
                     VPDYLAAADGDLRGVRIGFDERYALEGVDTETRRAVEATLATLRALGAETLSIRFPDV
                     DAMLADWGPNCAVETAVAHEPTFPARRAEYGPGLAGLIDAGRGLSGLDYQRILLRRRA
                     FTGRVHEALAPVDAMLVPAQPIAAPTVARMATLGQVPAELAALIRYTAPFDMSGHPTL
                     TVPAAFTAAGLPVGVQFVGRHLGEAAICRVGRAFQRATEWHRRHPRL"
BASE COUNT          432 a          965 c         1007 g          422 t
ORIGIN      
        1 acgccctcgt aggtcgattg cccgagggcg ttgagggtcg gcgcgcgttg cccgaaatgg
       61 ttgtagtagc gttccttgaa tgccatgttg gcatcgttgt cgagcgaggc gaagtacccc
      121 gccgagacga agaggccgtc ggtgttgtcg gcgccgatgg ccagcaggcc gttctcctcg
      181 atcgcacacg acagcctgaa gacatcgcgc gacaggccgc agcttccgaa ggcgcggttg
      241 aagtggatcg cgtcctgacc gacgagcgac aacaggatgg cgtgcggccg caggcgccgt
      301 atctcgtcga gcagcgcggt gtagtcctcg gcaccgaagg gcagatagcg atcgccgagc
      361 agctcgccgc cgcggtcgct cacatagcgc gcggccagcc ggtgcgaaac ccgcggccag
      421 acgtagtcgt tgccgatgaa catccagcgg cgcgcgccgt acctttcgat caggtattcg
      481 atggcgggtc gcaattgctg ctcgggcgtt tcacccaggg cgaacacgcc cggcgtgcgt
      541 tcgccgcctt cgtagagcgg cgtgtagacg tacgggatct ggcgcgccac atcgcgcagc
      601 acgcgctgcc gcacttggct cgtgtgcatg ccgacgatcg cgtcgatggc gcccgagtgc
      661 atcagttcgg cggtcacgct gccgacttcg agcgcttcgt cggaggaatc gatcacgcgc
      721 aagcgcagtt gtcggtcgag caggccgccg gccgcattga tctcggcctg tgcaagctgc
      781 gcgcaggcga tcgaggaagg tccccagatg cctgccgatc cgttgatcgg caccagcaat
      841 ccgacgacga aatcaccgcc gctgtccagc gacgcaggcc gcgcgcttcg gcggcgcccc
      901 gctgcccggg ccgacgggcc cttcgccgcg gcgcagctgc cacccgtcgt ctgctgcatg
      961 gtgctccccc gtctgcgtgc cccggcggtc gccggactct gcggtccgtg tctttgcttt
     1021 cccgggaaag caacttctac aatagcacag catgagccgc ttcgaacccc acctcagcct
     1081 gctgctggag cgcgccagtc gcgtcgtggg cgaccgcctg agcacgtcga tcggcctgga
     1141 gggcatcacc tcggaccact ggcgggtgct ccggcatctt gccgacggcg ccggccacac
     1201 gatgggcgag atcgccgatc gcctggaaat gaatccgccg accctcacca aactgatcga
     1261 ccgcatggtc ggcaagtcgc tggtgcagcg cgccgcggat cctgaagaca gtcgccgcgt
     1321 cctggtctat gcgaccgatg ccggtccgga acttcttcag gagctgcagt cgaaagtcga
     1381 ccagcatcac gcggcgctca ggacgcttct gggcgaacgc aacgcgcggc agctcgaacg
     1441 gttgctgacg atgctgatcg acgcgtcgga ccggcccgcg gcctgatcgc gccccacccg
     1501 aaacgattac aggcgcgggt ggcgccggtg ccactcggtg gcgcgctgga aggcgcgccc
     1561 gacgcggcag atcgccgctt cgccgagatg ccttccgacg aactgcacac cgaccggaag
     1621 cccggccgcg gtgaacgcgg ccggcacggt cagggtcggg tggcccgaca tgtcgaaggg
     1681 cgcggtgtag cggatcagcg cggcgagctc ggccggcacc tgcccgagcg tggccatgcg
     1741 cgcgaccgtc ggcgcggcga tcggctgcgc gggcacgagc atcgcgtcga ccggcgcgag
     1801 cgcctcgtgg acgcggcctg tgaacgcgcg gcgccgcagc aggatgcgct ggtagtcgag
     1861 ccccgagagg ccgcgccctg catcgatcag gccggcgagc cccgggccgt attcggcgcg
     1921 gcgcgccgga aaggtcggtt cgtgcgcgac ggcggtctcg acggcgcagt tcgggcccca
     1981 gtcggcgagc atcgcatcga cgtcgggaaa ccggatcgag agggtctcgg cgccgagcgc
     2041 gcgcagcgtc gcgagcgtcg cttcgaccgc gcgccgcgtc tcggtgtcga cgccctcgag
     2101 cgcatagcgc tcgtcgaagc cgatgcgcac gccgcgcagg tcgccgtcgg cggcggcgag
     2161 gtagtcgggc acgtcggcgc gcaaggtggt cggatcgtgc gggtcgacgc ccgcgatcgc
     2221 gccgagcacg atcgccgcat cggcggcgct gcggcacatc gggccgatgt ggtcgagcga
     2281 cgcggcgagt tcgaagcaac cgtacttcga cacccgtccc caggtcggct ttagcccggt
     2341 gttgccgttg gccgccgacg gaaaccggat cgaaccgccg gtgtccgatc cgagcgagcc
     2401 gaagcacaga cccgcggcgg tcgcgacgcc cgagccgctc gacgacgcgc cggaccagtg
     2461 atcgtgatgc caggggttgc gtggcggcgt gatgtccgga tggtggtcgg cgaaggcgcc
     2521 ttcggtcagc tgcagcttgc cgagcaggat cgcgccggcc tcgcgcagcc tggtcaccac
     2581 ggtcgcatcg aaccccggca cgaagtcgcg gtgcagcggc atgccggcgg ccgtgacgac
     2641 ccctttcgtg aagcacaggt ccttgacggc gatcggcacg ccgtgcagct gcgcgaggat
     2701 ctggcgccgg ccgatcatct gctcggcggc gcgggcctgt tcgagcgcga gctccggcgt
     2761 gacccgggca taggatttca gatccggatc gaggcgttcg atccggcgca gcatctcgcg
     2821 cgtcaa
//
LOCUS       DASVHM010000644         1917 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_332648, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000644 DASVHM010000000
VERSION     DASVHM010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332648"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1509)
                     /locus_tag="VF308_11965"
     CDS             complement(<1..1509)
                     /locus_tag="VF308_11965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation protein"
                     /protein_id="HEX7437418.1"
                     /translation="MRILFLTRSFNSLTQRLYLELTALGHELAVEFDISDAVTAEAVE
                     LFRPALIVAPFLKRAIAEAVWRRTVCLVVHPGIVGDRGPSALDWAIAEGERSWGVTVL
                     QANAEMDAGPVWAAETFAMRDATKSSLYRQEVTEAAARAVLAAVRRFAEVGAPAAIAT
                     DGGRGRWRALMRQVDRRIDWQRDDTQAVLRKIRAADGAPGVLDELLGAPCHLFDAHAE
                     ALAQREPPGRVIGRRHEAVLRATVDGAVWIGHVRRTDQAGSFKLPTALAFPAETASLP
                     ERPIALDAPAEAWRDIRYESRGDVGALHFPFYNGAMSTAQCQRLAAALRFALARPARV
                     LLLLGGGDFWCNGLHLNVIEAADSPADESLRNIDAMNDLTLILIEATDRIVVAAMQGN
                     AGAGGVFMALAADQVWARGSVVLNPHYKNMGNLYGSEYWTYLLPRRLKRGTPADVMNH
                     RLPMSAGQATQWGLVDAVFGDSPARFVQQAFARAACLAVDPALSELLREKQHR"
     gene            complement(1518..>1917)
                     /locus_tag="VF308_11970"
     CDS             complement(1518..>1917)
                     /locus_tag="VF308_11970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009668169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HEX7437419.1"
                     /translation="AAMVRAVPGIRCLRDPTRGGLATTLNELASQSGAGMLIEEAGVP
                     VRGPVEAACEFLGLDPLYVANEGKLVAICDPADAARLLEAMRAHPLGHDAAIIGEVIE
                     DRHHFVQMRTRFGGKRIVDWLTGDQLPRIC"
BASE COUNT          273 a          692 c          685 g          267 t
ORIGIN      
        1 ccggtgctgc ttctcgcgca gcagctccga caacgccggg tcgacggcca ggcaggcggc
       61 tcgggcgaag gcctgctgca cgaagcgcgc cgggctgtcg ccgaacaccg cgtcgacgag
      121 cccccattgc gtcgcctgcc cggccgacat cggcaggcga tggttcatca cgtcagcggg
      181 cgtgcccctc ttcagccggc gcggcaacag gtaggtccag tactcggacc cgtagaggtt
      241 gcccatgttc ttgtagtgcg ggttcagcac gacgctgccc cgggcccaga cctggtcggc
      301 tgcgagcgcc atgaacacgc cgccggcgcc ggcattgccc tgcatcgcgg cgacgacgat
      361 gcggtcggtc gcctcgatca agatcagggt gaggtcgttc attgcatcga tgttgcgcaa
      421 cgattcgtcg gccgggctgt cggccgcctc gatcacgttc aggtggaggc cgttgcacca
      481 gaaatcgccg ccgcccagga ggagcagcac gcgtgccggc cgggccagcg caaagcgcag
      541 agcagccgcg aggcgctggc actgcgccgt gctcatcgcc ccgttgtaga aggggaagtg
      601 cagcgcgccg acgtcgcccc gagactcgta gcggatatcg cgccaggcct ctgccggcgc
      661 atcgagggcg atcggccgct ccggcaggct cgccgtctcg gccgggaagg cgagcgccgt
      721 cggcagcttg aagctgccgg cctggtcggt ccggcgcaca tgcccgatcc agaccgcgcc
      781 gtcgaccgtg gcgcgcagca ccgcctcgtg gcgccggccg atcacgcggc ccggcggctc
      841 gcgctgcgcc agcgcctcgg cgtgcgcatc gaacaggtgg cagggcgcgc ccaacagctc
      901 gtcgagtacg cccggcgcgc cgtcggccgc gcggatcttg cgcagcacgg cctgcgtgtc
      961 gtcgcgctgc cagtcgatgc ggcggtcgac ctgccgcatt agcgcccgcc agcggccgcg
     1021 cccgccatcc gtggcgatgg ccgcaggcgc gccgacttcg gcgaagcgtc gcaccgcggc
     1081 aagcaccgcg cgagccgcgg cttcggtcac ttcctggcgg tacaggctcg atttcgtcgc
     1141 gtcgcgcatc gcgaaggtct cggccgccca gaccgggccc gcgtccatct cggcgttggc
     1201 ctgcagcacg gtgacgcccc agctgcgctc gccttcggcg atcgcccagt cgagcgcgga
     1261 gggcccgcgg tcgccgacga tgcccgggtg cacgaccagg cagaccgtgc ggcgccacac
     1321 cgcctcggca atcgcgcgct tgagaaatgg cgcgacgatc agcgcaggcc ggaacaactc
     1381 gaccgcctcg gccgtcactg cgtccgagat gtcgaattcg acggccagct cgtgcccgag
     1441 cgccgtgagt tccaggtaca ggcgctgcgt caggctgttg aagctgcggg tcaggaacag
     1501 gatgcgcacg ccggggctca gcagatgcga ggcagctgat ccccggtcaa ccagtcgacg
     1561 atgcgcttgc cgccgaagcg ggtacgcatc tgcacgaagt gatgccggtc ttcgatgacc
     1621 tcgccgatga tcgccgcgtc gtggccgagc gggtgggcgc gcatcgcctc gaggagccgc
     1681 gccgcgtcgg ccgggtcgca gatggcgacg agcttgccct cgttggcgac gtacagggga
     1741 tcgaggccca ggaactcgca ggcggcttcc accgggcctc gcaccggcac gccggcttcc
     1801 tcgatcagca ttccggcgcc cgattgcgag gccagctcgt tgagcgtggt ggccaggccg
     1861 ccgcgcgtcg ggtcgcgcag gcagcggatg ccgggcaccg cccggaccat cgccgcg
//
LOCUS       DASVHM010000645         3566 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_695879, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000645 DASVHM010000000
VERSION     DASVHM010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3566
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_695879"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..276
                     /locus_tag="VF308_11975"
     CDS             <1..276
                     /locus_tag="VF308_11975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PtsA"
                     /protein_id="HEX7437420.1"
                     /translation="RAARAGVITGILLAFARIAGETAPLLFTALSNQFWTSDLTKPMA
                     SLPVTIFKFAMSPYENWQKLAWAGVFLITLGVLILNILARVFLRDKH"
     gene            293..1078
                     /gene="pstB"
                     /locus_tag="VF308_11980"
     CDS             293..1078
                     /gene="pstB"
                     /locus_tag="VF308_11980"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HEX7437421.1"
                     /translation="MDVKVELPVTEKAKLSVRNLNFYYGSFHALKNISLDIPEKKVTS
                     FIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIMMDGENLLTSKEDVSLIRAKIGMVFQ
                     KPTPFPMSIHDNIAFGVKLFETLPRIEMDERVEWALKKAALWNEVKDKLNQSGSGLSG
                     GQQQRLCIARGIAIKPEVLLLDEPCSALDPISTGKIEELIHEFKTDYTVVIVTHNMQQ
                     AARCSDYTAYMYLGDLIEFGPTSDVFMRPKKKDTEDYITGRFG"
     gene            1113..1820
                     /gene="phoU"
                     /locus_tag="VF308_11985"
     CDS             1113..1820
                     /gene="phoU"
                     /locus_tag="VF308_11985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEX7437422.1"
                     /translation="MSDKHMSTQFDAELSGISTRVLEMGGIVESQVARAVYALTHFSS
                     EIASEVLATEERVNATEVAIDHDLSTIIARRQPTARDLRLLIAISKTIANLERVGDEA
                     ARIARTVQRLVNSGVSSRLRLPVNDLAYESELAVSQLRKALDAFARLDVDRAVEVLKQ
                     DDLIDQEFEGLIRKLITFMMEDPRTISSSIDLVFVGKAIERVGDHAKNIAEQIIYIVK
                     GTDVRHNSVVTVETLVR"
     gene            1840..2541
                     /gene="phoB"
                     /locus_tag="VF308_11990"
     CDS             1840..2541
                     /gene="phoB"
                     /locus_tag="VF308_11990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HEX7437423.1"
                     /translation="MSRILVVEDESAIAELISINLRHAGHEVTLAANAEQAQAAVDGV
                     LPDLVILDWMLPGQSGLALAKRWRAQARTRELPMIMLTARADEADKVCGLDAGADDYL
                     TKPFSTQELMARIRAVLRRKAPEALDTVVEIGVLKLDPATRRVSGNDRELRLGATEFR
                     LLHFLMTHPERVHSRAQLLDRVWGDHVFIEERTVDVHVKRLREALSPAQCAHMIETVR
                     GAGYRLTRQAQVLSA"
     gene            2567..>3566
                     /locus_tag="VF308_11995"
     CDS             2567..>3566
                     /locus_tag="VF308_11995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004721 - phosphoprotein phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor protein PhoR"
                     /protein_id="HEX7437424.1"
                     /translation="MSWFIPRVLAGLAAMALGGLAGLLLGHVEAGVPGIFFGGAFALA
                     AIAIIDRIHGMRLLNWLRRGPEGSAPRDAGLWGELGYRVERALRVSEQNARMERDRLA
                     QFLSAIEASPNGVLLLDAGDQIEWCNSRAADHFALDPQRDRRQRITNLVRAPAFVAYL
                     QGGKFDDPVTFQAPRGDATLSVLVRRYGGDMKLVLSQDMTEQERSEGMRRDFVANVSH
                     EIRTPLTVLSGFLETLTNLPLTEAERKRVVTLMAQQAQRMGTLVNDLLILAQLEGSPR
                     PAADRWVDVKTLLGLVEADARALSAGRHTLRFARPEAAEIAGAQSELLSAVTNLVNN"
BASE COUNT          635 a         1177 c         1170 g          584 t
ORIGIN      
        1 cgcgcggcgc gcgccggcgt gatcaccggc atcctgctcg ccttcgcccg catcgccggc
       61 gaaaccgcac cgctgttgtt cacggcgctg tcgaaccaat tctggaccag cgacctgacc
      121 aagccgatgg cgagcctgcc ggtgacgatc ttcaagttcg cgatgagccc ctacgagaac
      181 tggcagaagc tggcctgggc gggcgttttc ctgatcaccc tcggcgtgct gattctgaac
      241 atcctggcgc gggtcttcct gcgcgacaaa cactgattca aaaggcttcg agatggacgt
      301 caaagtcgaa ctgccggtga ctgaaaaggc gaagctctcg gtgcgcaacc tgaatttcta
      361 ctacgggagc ttccacgcgc tgaagaacat ctcgctcgac attcccgaga agaaggtcac
      421 ctcgttcatc ggcccgtcgg gctgcggcaa gtcgacgctg ctgcgcacct tcaaccgcat
      481 gtacgagctc tatcccgagc agcgcgcgga gggtgagatc atgatggacg gcgagaacct
      541 cctgacctcc aaggaagacg tgtcgctgat ccgcgcgaag atcggcatgg tgttccagaa
      601 gccgacgccg tttccgatgt cgattcacga caacatcgcg ttcggcgtga aactgttcga
      661 gacgctgccg cggatcgaga tggacgagcg ggtcgaatgg gcgcttaaga aggcggccct
      721 gtggaacgag gtgaaggaca agctgaacca gagcgggtcg ggcctgtcgg gcgggcagca
      781 gcagcgcctg tgcatcgcgc gcggcatcgc gatcaagccc gaggtgctgc tcctcgacga
      841 gccgtgctcg gcgctcgatc cgatctcgac cggcaagatc gaggaattga tccacgaatt
      901 caagaccgac tacaccgtcg tgatcgtgac ccacaacatg cagcaggccg cgcgctgctc
      961 cgactacacc gcctacatgt acctcggcga cctgatcgag ttcgggccga cctcggacgt
     1021 cttcatgcgt ccgaagaaga aggacaccga ggactacatc accggccgtt tcggctgaaa
     1081 tcgagcgccg cgccgcgcag caggaagaca ccatgagcga caaacacatg tccacgcagt
     1141 tcgatgccga attgagcggc atctccacgc gcgtcctcga aatgggcggg atcgtcgagt
     1201 cgcaggtcgc ccgcgcggtc tacgccttga cccacttcag cagcgagatc gcctccgaag
     1261 tgctggcgac cgaggagcgc gtcaacgcca ccgaggtcgc gatcgaccac gatctttcga
     1321 cgatcattgc gcgccgccag ccgacggcgc gcgacctgcg cctcctgatc gcgatctcga
     1381 agaccatcgc caatctcgag cgcgtcggcg acgaggcggc ccgcatcgcc cgcaccgtgc
     1441 agcgcctcgt caattccggc gtgtcgagcc ggctgcgcct gcccgtgaac gacctggcct
     1501 acgagtcgga actggcggtt tcgcagctgc gcaaggcgct cgacgcattc gcccgcctcg
     1561 acgtcgatcg cgccgtcgaa gtgctcaaac aggacgacct gatcgaccag gagtttgaag
     1621 gcctgataag gaagctcatc accttcatga tggaggatcc gcgcaccatc tcgtcgagca
     1681 tcgacctcgt cttcgttggc aaggcgatcg agcgggtcgg cgaccatgcg aagaatatcg
     1741 ccgagcagat catctacatc gtcaagggta ccgacgtgcg tcacaacagc gtcgtcaccg
     1801 tcgagacgct ggtccgctga gcgcggcgaa gggagaaaga tgagccggat cctggtcgtc
     1861 gaagacgaat cggccatcgc cgaattgatc tcgatcaacc tgcgccatgc gggtcacgag
     1921 gtgactctgg ccgcgaatgc cgagcaggcg caggcggcgg tcgatggcgt gctgcccgac
     1981 ctcgtgatcc tcgactggat gctgcccggc cagtcggggc tggcgctcgc gaagcgctgg
     2041 cgcgcccagg cgcgcacgcg cgaattgccg atgatcatgt tgacggcgag ggctgacgag
     2101 gccgacaagg tctgcggtct cgacgccggc gccgacgatt acctgaccaa gccgttctcg
     2161 acccaggaac tgatggcgcg catccgcgcc gtgctgcgca ggaaggcgcc cgaggcgctc
     2221 gacaccgtgg tcgagatcgg cgtgctcaag ctcgacccgg caacgcggcg cgtcagcggc
     2281 aacgatcgcg aactgcgcct cggcgcgacc gagttccgcc tgctccactt cctgatgacc
     2341 catcccgagc gggtgcatag ccgggcgcag ctcctcgacc gggtctgggg cgaccacgtg
     2401 ttcatcgagg agcgcacggt cgacgtgcac gtgaagcgct tgcgcgaggc cttgagcccg
     2461 gcacaatgcg cccatatgat tgaaacggtt cgcggggccg gctatcggct gacccggcag
     2521 gcgcaggtgc tctcggcgtg aacggtgaca agtcggcgag agtggcatga gctggttcat
     2581 tccgcgcgtg ctggcggggc tcgcggcgat ggcgctcggc ggcctcgccg gcctgctgct
     2641 cggccacgtc gaggcagggg tcccaggcat tttctttggt ggtgcgttcg cgctcgctgc
     2701 gatcgcgatc atcgaccgga tccacggcat gcgcttgctg aactggctgc gccgcgggcc
     2761 cgagggctcc gcgccacgcg acgccggttt gtggggcgag ctcggttacc gggtcgagcg
     2821 cgccctgcgc gtctctgagc agaatgcgcg catggagcgc gaccggctcg cgcagttcct
     2881 ctcggcgatc gaggcgtcgc cgaacggcgt gctgctgctc gacgccggcg accagatcga
     2941 atggtgcaat tcgcgcgccg ccgatcattt cgcccttgac ccccagcgcg accggcgcca
     3001 gcgcatcacg aacctggtcc gggccccagc tttcgtcgcc tacctgcagg ggggcaagtt
     3061 cgatgacccg gtcaccttcc aggcgccgcg cggcgacgcc acgctttcgg tgctggtgcg
     3121 gcgctatggc ggcgacatga agctcgtgct gtcgcaggac atgacggaac aggagcgctc
     3181 cgagggcatg cggcgcgact tcgtcgcgaa tgtctcgcat gaaatccgca cgcccttgac
     3241 cgtgctttcg ggctttctcg agaccctcac gaacctgccg ctgacggagg ccgagcgcaa
     3301 gcgcgtcgtg accctgatgg cgcagcaggc gcagcgcatg ggcacactcg tcaacgacct
     3361 gctgatcctg gcgcagctcg agggcagccc gcgtccggcg gccgaccgct gggtcgatgt
     3421 gaagaccttg ctgggcctgg tcgaggccga tgcccgggcg ctctcggccg gccggcacac
     3481 gctgcgtttc gccaggcccg aagcggccga gatcgccggc gcgcagagcg agctgctcag
     3541 cgccgtcacg aatctcgtca acaacg
//
LOCUS       DASVHM010000646         3054 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_839735, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000646 DASVHM010000000
VERSION     DASVHM010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3054
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_839735"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..87
                     /locus_tag="VF308_12000"
     CDS             <1..87
                     /locus_tag="VF308_12000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015866983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HEX7437425.1"
                     /translation="EAVAINLDIEPVEPPQTVRWIDPTHPQG"
     gene            99..1112
                     /locus_tag="VF308_12005"
     CDS             99..1112
                     /locus_tag="VF308_12005"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX7437426.1"
                     /translation="MRLSVLDQSVSLAGSSEDAAIRDTLDLAQHCERLGYARFWLSEH
                     HGLPTIVGSAPEILMAAIAARTERIRIGSAGVMLPHYSALKVAEQFRVLEALAPGRID
                     LGVGRAPGGDMRTARALNPNAHAAAEAFPEQVRDLQAWTSAGSHLGITAHPLGAHAPE
                     IWILGSSDYGAQLAAHFGLPYAYAYFFTDGQGAAEAVALYRQLYRPSERHPRPQATVC
                     VWALAAETREEAEHHALARERWRVDRARGVFGPLQAPDEIAARGFSAAEMATIGPMRA
                     KAFVGTAAEVALRLRTLAREFALDELVVNTWAHDPAVRRRSYALLAREFALVESSMPK
                     APG"
     gene            1109..1357
                     /locus_tag="VF308_12010"
     CDS             1109..1357
                     /locus_tag="VF308_12010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016836635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEX7437427.1"
                     /translation="MRAIDLELRGDYIALDALLKTTGLATSGGAAKTMVAGGLVQVDG
                     RDELRKTCKVRAGQVVKVGDARVRVLATPASPQVIEPP"
     gene            complement(1336..2571)
                     /locus_tag="VF308_12015"
     CDS             complement(1336..2571)
                     /locus_tag="VF308_12015"
                     /inference="COORDINATES: protein motif:HMM:NF016150.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 domain-containing protein"
                     /protein_id="HEX7437428.1"
                     /translation="MTPLSPSPASGPISSAERILVLDIVRGVALLGIFIMNVPGFSHS
                     LFAAASGVELAAGPFDRAAALLREELFGGKFNSMFSLLFGIGFTIQLGRLRATQPARA
                     TLIYVRRLLVLAAIGLVHAGLFWSGDVLLVYAVLGFTLLLLRPVPDAVLIALIVACLM
                     FPALFEIGRSHLVSPQAEALAAFDYQDLETSNNLAFGQGTFVDAASETARMLAWGYGT
                     PMGRWSYALFYAQMGAGLLLGYLVGRQRWVQGLDDLMPQVPRAQGAALASSVAGSLVY
                     LATKPGVFVAEPTPTIVFIGIFLHTASRLALMVFYVLTLVRLTRSAAWQHRLLPFAAA
                     GRMPLTNYLLQTAMGTFIFYGWGLGLWGRGGAALEIGLAAGLFVFIQLPLSVWWFRRF
                     RYGPLEYVWRVLSYGGSIT"
     gene            2728..>3054
                     /locus_tag="VF308_12020"
     CDS             2728..>3054
                     /locus_tag="VF308_12020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016451519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HEX7437429.1"
                     /translation="MFETAIAGSLPKPAWLAETETLWPQWRGGGAALDVAKADATLLW
                     LKLQEDLGLDIVGDGEQARQHFVHGFLARVEGIDFEHKVKMGIRDNRYEAMVPQVVGE
                     RRLAGRV"
BASE COUNT          537 a         1036 c         1086 g          395 t
ORIGIN      
        1 gaggcggtcg cgatcaacct cgacatcgag ccggtcgaac cgccgcagac ggtgcgctgg
       61 atcgatccga cccatccgca gggctgagcg tggaaacgat tcggctctcg gtgctggacc
      121 agtcggtgtc gctggccggc agcagcgaag acgcggcgat ccgcgacacg ctcgacctcg
      181 cccaacattg cgagcgcctc ggctacgcgc gtttctggct cagcgaacac cacggcttgc
      241 cgacgatcgt cggcagcgcg cccgagatcc tcatggcggc gatcgcggcg cgcaccgagc
      301 gcatccgcat cggcagcgcc ggcgtgatgc tgccgcacta cagcgcgttg aaggtcgccg
      361 agcagttccg cgtgctggag gcgctcgccc cgggtcgcat cgacctcggc gtgggacgcg
      421 cacccggcgg cgacatgcgc accgcgcgcg cactcaaccc gaacgcgcat gccgccgccg
      481 aggctttccc cgaacaggtt cgcgacctcc aggcgtggac ctcggcaggc tcccacctcg
      541 gcatcaccgc gcacccgctg ggcgcccatg cgcccgagat ctggatcctt ggtagctccg
      601 attacggcgc gcaactggcc gcgcatttcg ggctgcccta tgcgtacgcc tatttcttca
      661 ccgacgggca gggcgcggcc gaggcggtcg cgctctatcg gcagctctat cgtccgagcg
      721 agcgccatcc gcggccgcaa gccaccgtct gcgtctgggc gctcgccgcc gagacgcgcg
      781 aggaagccga gcaccacgcg ctcgcgcgcg agcgctggcg ggtcgaccgc gcccgtggcg
      841 tcttcggacc gctgcaggcg cccgacgaga tcgcggcacg tggcttcagc gcggccgaga
      901 tggcgacgat cgggccgatg cgcgcgaagg cctttgtcgg caccgccgcg gaggtcgcgc
      961 tgcggctgcg tacgctggca cgcgagttcg cgctcgacga actcgtcgtc aacacctggg
     1021 cccacgatcc cgcggtgcgg cggcgctcct atgcgctgct ggcgcgcgag ttcgcactgg
     1081 tcgaatcgag catgccgaag gcgcccggat gagggcgatc gatctggaac tgcgcggcga
     1141 ctacatcgcg ctcgacgcgc tgctgaaaac gaccggtctc gcgaccagcg gcggcgcggc
     1201 caagacgatg gtcgcggggg gactcgtgca ggtcgacggg cgcgacgagc tgcgcaagac
     1261 ctgcaaggtg cgcgcggggc aggtcgtcaa ggtcggcgat gcgcgggtcc gggtgctggc
     1321 cacgccagcg tcgcctcagg tgattgagcc gccgtaggaa agcacgcgcc agacgtattc
     1381 gagcggcccg tagcgaaagc gcctgaacca ccagacgctc agcggcagct ggatgaagac
     1441 gaacaggccc gcggcgagcc cgatctcgag cgccgctccg ccccggcccc aaagcccgag
     1501 gccccaaccg tagaagatga aggtgcccat cgcggtttgc agcaggtagt tcgtgagcgg
     1561 catgcggcct gcggccgcaa agggaagcag gcggtgctgc cacgccgccg agcgggtcag
     1621 gcgaaccagc gtgaggacat agaagaccat cagcgcgagc cggctcgcgg tgtgcaggaa
     1681 gatgccgatg aagacgatcg tcggcgtcgg ttccgcgacg aacaccccgg gcttcgtcgc
     1741 gagatagacg agcgagcccg ccacgctcga tgcgagcgcc gccccttgcg cgcgaggcac
     1801 ctgtggcatc agatcgtcca ggccttgcac ccagcgctgc cgaccgacga ggtagccgag
     1861 cagcagcccg gcgcccatct gcgcatagaa gagcgcatag ctccagcgcc ccatcggcgt
     1921 gccgtagccc caggccagca tgcgtgcggt ctcgctcgct gcatcgacga aggtgccctg
     1981 gccgaacgcc aggttgttgg aagtctccag atcctggtag tcgaacgccg caagcgcctc
     2041 ggcctgcggg ctgacgaggt gggagcgccc gatttcgaag agcgccggaa acatcaggca
     2101 ggccacgatc aacgcaatca gaaccgcgtc gggcacgggc cgcaacagca gcagcgtgaa
     2161 gccgagcacg gcatagacca gcaatacgtc gccgctccag aacaggccgg catggacgag
     2221 cccgatcgcg gccaggacga gcaggcggcg cacatagatg agcgtcgcgc gtgcgggctg
     2281 cgtggcgcgc aggcggccga gctggatcgt gaagccgatg ccgaacaaca ggctgaacat
     2341 gctgttgaac ttgccgccga agagttcctc gcgcaacagc gccgcggcgc ggtcgaacgg
     2401 cccggctgcc agctcgacgc cgctggccgc ggcgaacagc gaatggctga atccgggcac
     2461 gttcatgatg aagatgccga gcagcgccac gccgcgaacg atgtcgagga cgaggatgcg
     2521 ctccgcggag gaaatcggtc cgctggccgg ggaaggggaa agaggtgtca cgaggcgcgg
     2581 gccgttgagg ctgggcgacg cgagggtaag tgcggcgcac gaccggcgca atggcgcggc
     2641 ctcgaaggcg ttgcaaaatc acgtcctacc gcttgacacg cattgcgcag ggcccgacgg
     2701 tcgcgctcaa cgaaggaagc cgaagccatg ttcgagaccg ccatcgcggg cagcctgccg
     2761 aagccggcgt ggctcgccga aaccgaaacg ctctggccgc aatggcgcgg cggcggtgcg
     2821 gcgctggacg tggccaaggc cgacgccacg ctgctctggc tcaagctcca ggaggacctc
     2881 ggcctcgaca tcgtcggtga cggcgagcag gcgcgccagc atttcgtgca cggcttcctg
     2941 gcccgggtcg aaggcatcga cttcgagcac aaggtgaaga tgggcatccg cgacaaccgc
     3001 tacgaggcga tggtgccgca ggtcgtgggc gagcggcgcc tcgccggccg cgtg
//
LOCUS       DASVHM010000647         3840 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_839740, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000647 DASVHM010000000
VERSION     DASVHM010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3840
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_839740"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1067
                     /locus_tag="VF308_12025"
     CDS             <1..1067
                     /locus_tag="VF308_12025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HEX7437430.1"
                     /translation="DWRYYAEKVRKVRFDFDEAQVKPYFPLERMVAAAFDCATRLFGL
                     RFIEQPQLKAYHPDVKVYEVRGADAGLVGVFLHDNFARPTKRSGAWMSAYRMQSRNGA
                     GGPDRVVPIVVNNNNFAKGAPGEPTLLSFDDARTLFHEFGHGLHGLLSNVTYERASGT
                     NVLRDFVELPSQLFEHWLDEPEVLKRHARHYATHEPIPDALVDRIHAARFFNQGYETV
                     RYTASALVDMAAHALASVGEDFDIAAFERDELERLGMPAGVGMNHRLPHFGHLFSGSS
                     YAAGYYVYLWAEVLDADGYEAFVEAGDPFDPGVAARLHRFIYASGDSLEPAEAYRAFR
                     GRNARIEPMLRQRGLLEEEG"
     gene            complement(1086..>3840)
                     /locus_tag="VF308_12030"
     CDS             complement(1086..>3840)
                     /locus_tag="VF308_12030"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEX7437431.1"
                     /translation="KLAEQTQRQAELLDMAQEFGRLGVWERAIPSGQGHWDRHVFGFW
                     GLDPRAGTPTHLQALQQIHPDDRALMSYTQTTQAAGRYAQRYRVLRPDGTTRWIHSQW
                     EVKNSPQGKPDRAIGIMVDDTLVYNSARALGEANAQLELAVELGRIAIWRHDLKTQRI
                     HYNDRGFALLDVPPRPDGLPLEEMHARVHPDDMPLVLASAEHALSSDTPTDMEVRYRR
                     ADGGWRYVLTRRVVQRDRSGEPLAFIGIALDVTERVEHLRTTEELARRLDAAARAARL
                     GIWTTTTSTEETDWNAQMFELFDREPTSRAPSLAEWIATCVHPSERTRVGTLARDFLR
                     RGEGPFEVEFRTIRRDGTSRWIVIRADLDRMRTDRRRLLGVALDVTEHHEALSALRHA
                     SERAALITRHAGIGTWEADLGGAGERWDEQMFHLRGLAPASTAPTREERMALVHPKDL
                     HRVLDSRDDDVKANLPGAYEFRVRLPDGSYRWLASRSAVVRDDRGIALRRVGVNWDIT
                     ESKSAEIARQQAALAEREIQAKSQFLSRMSHELRTPLNAVLGFTQLLQIEARQAKADN
                     QGIKLGHIRSAGEHLLALINDVLDLSSLESGELKLQLQPVDLAALIAQTVPLVEPLAA
                     QHEVAIRAGESAGIALADPKRMRQVLINLLSNAIKYNRRGGQVLIETRLEPGRVVLIV
                     RDTGRGLTPDQLTHLFEPFNRLGIESEGIEGTGIGLTIVKALVEGMGGTIRISSRPGT
                     GTGFEVTLPAHRAGSAMPTLPAAAEPPVANARRHERSGQLLYIEDNSVNVMLVEELVR
                     SLSGLQIASEPTGAAGVARARTLKPDLILVDLQLPDFDGFEVLRRLRAQPESATTPCI
                     ALSANAMPEDIARGLDAGFTDYWTKPIDFKIFLAALEWFFPTPPGANSEAGGRFPAAP
                     RHP"
BASE COUNT          557 a         1260 c         1362 g          661 t
ORIGIN      
        1 gggactggcg ctactacgcc gagaaggtgc gcaaggtccg cttcgatttc gacgaggcgc
       61 aggtcaagcc gtatttcccg ctcgagcgca tggtggctgc ggcattcgat tgcgcgaccc
      121 gcctcttcgg gctcaggttc atcgagcagc cgcagctcaa ggcctatcac ccggacgtga
      181 aggtctacga ggtgcgcggc gccgacgcgg gcctggttgg ggtgttcctg cacgacaatt
      241 tcgcgcgccc gaccaagcgc agcggcgcgt ggatgagcgc gtaccgcatg caatcgagga
      301 acggtgcggg cggccccgac cgggtcgtgc ctatcgtcgt caacaacaac aacttcgcga
      361 aaggggcgcc gggcgagccg acgctgctga gcttcgacga cgcgcgcacg ctctttcacg
      421 aattcggcca tggcctgcat gggctgctct cgaacgtcac ctacgagcgc gcctcgggaa
      481 ccaacgtgct gcgcgatttc gtcgagctgc cgtcgcagct cttcgaacac tggctcgacg
      541 aacccgaggt gttgaagcgc catgcgcgcc actacgccac ccacgagccg atccccgatg
      601 cgctggtcga ccggatccat gccgcgcgct tcttcaacca gggctacgag accgtgcgct
      661 acacggcgtc ggcgctggtc gacatggcgg cgcacgcgct cgcctcggtc ggcgaggatt
      721 tcgacatcgc cgcattcgag cgcgacgagc tcgaacggct cggcatgccg gcgggtgtcg
      781 ggatgaacca ccgcctgccc catttcgggc acctcttctc cggatcgagc tacgccgccg
      841 gctactacgt ctacctgtgg gccgaggtgc tggatgccga tggctacgag gccttcgtcg
      901 aagccggtga tccgttcgat cccggcgtcg cggcacggct gcaccgcttc atctatgcgt
      961 cgggcgactc gctcgagccg gccgaggcgt atcgcgcgtt tcggggccgc aatgcgcgca
     1021 tcgagccgat gctgcgccag cgtgggctgc tcgaagaaga ggggtgagat gtcgcttctc
     1081 gactctcacg gatgccgcgg agccgccggg aatctgccgc cagcttctga gttcgcgccc
     1141 ggcggcgtcg gaaagaacca ttccagcgcc gcgagaaaga tcttgaagtc gatcggcttg
     1201 gtccagtagt cggtgaagcc ggcgtcgagg ccgcgcgcga tgtcttccgg catcgcattg
     1261 gccgacaacg cgatgcacgg cgtcgtggcg gattccggct gcgcgcgcag ccgccgcagc
     1321 acctcgaagc cgtcgaaatc gggcagctgc aaatcgacca ggatcagatc gggcttgagc
     1381 gttcgggccc gggcgacgcc ggcggccccg gtcggctccg aggcgatctg cagaccggac
     1441 aggctcctga cgagttcctc gaccagcatc acgttgacgc tgttgtcttc gatgtagagc
     1501 agctgcccgc tccgttcgtg gcgtcgcgca ttcgcgaccg ggggctcggc ggcggccggg
     1561 agggtgggca tcgcgctgcc ggccctgtgt gccggcagcg tgacctcgaa ccccgttccg
     1621 gttccgggcc ggctcgagat gcgaatcgtg ccgcccatgc cctcgacgag cgccttcacg
     1681 atcgtcagcc cgatgccggt gccttcgatg ccttcgcttt cgatgccgag ccggttgaag
     1741 ggctcgaaga gatgcgtgag ctgatcgggc gtcaggccgc ggccggtgtc gcggacgatg
     1801 agcaccaccc ggcccggctc gagccgggtc tcgatcaaca cctggccacc gcgccggttg
     1861 tacttgatgg cgttcgaaag gaggttgatc agcacctggc gcatgcgctt cggatcggcg
     1921 agtgcgatgc cggcgctttc gcccgcccga atcgcgacct cgtgctgcgc cgcgagcggc
     1981 tcgaccagcg gaaccgtctg cgcgatcaga gctgccaggt cgaccggctg gagttgcagc
     2041 ttcagttcgc ccgattcgag actcgagaga tcgaggacgt cgttgatcag ggccagcaag
     2101 tgctcgccgg cggagcggat gtggccgagc ttgatgccct ggttgtctgc cttggcctgc
     2161 cttgcctcga tttgcagaag ctgcgtgaag ccgagcaccg cgttgagcgg cgtgcgcagt
     2221 tcatggctca ttcgcgacag gaattgcgac ttggcctgga tctcgcgttc ggcgagcgcc
     2281 gcctgttggc gcgcgatctc ggcggacttg ctctcggtga tgtcccagtt gacgccgacg
     2341 cggcgcagcg cgatgccccg atcgtcgcgc accactgccg agcgcgaggc gagccagcgg
     2401 tagctgccgt cgggcaggcg aacgcggaac tcgtaggctc ccggcaggtt ggccttgacg
     2461 tcatcgtcgc gcgagtcgag cacgcggtgc aggtctttcg gatggaccag cgccatgcgc
     2521 tcctcgcgag tcggtgccgt gcttgccggc gccaggccgc gcaggtgaaa catctgctcg
     2581 tcccagcgtt cccctgcgcc tcccagatcg gcttcccagg taccgatccc ggcatggcgc
     2641 gtgatcaggg ccgcgcgttc gctcgcatgg cgcagcgccg agagcgcctc gtggtgttcg
     2701 gtcacgtcga gcgccacgcc gaggaggcgg cgccggtcgg tgcgcatgcg atcgaggtcg
     2761 gcccggatca cgatccagcg gctcgttcca tcgcgccgga tggtccggaa ctcgacttcg
     2821 aaaggcccct cgccgcgcct caggaaatcg cgcgccagcg tgccgacgcg ggtgcgctcg
     2881 gaggggtgga cgcaggtggc gatccattcc gcgagcgacg gcgcgcggct cgtgggttcc
     2941 cggtcgaaga gctcgaacat ctgggcgttc cagtcggtct cctcggtcga ggtcgtggtg
     3001 gtccagatgc ccaggcgtgc cgcgcgcgcg gcggcgtcga gccggcgcgc gagctcctcg
     3061 gtggtgcgca ggtgttcgac gcgctcggtc acatcgaggg cgatgccgat gaaggcgagc
     3121 ggctcccccg aacggtcgcg ttgcaccacc cggcgtgtca acacgtagcg ccagccgcca
     3181 tcggcgcgcc ggtagcggac ttccatgtcg gtcggcgtgt ccgacgaaag cgcgtgctct
     3241 gcggatgcaa ggacgagcgg catgtcgtcc ggatggacgc gggcgtgcat ttcttccagg
     3301 ggcagaccgt ccgggcgggg cggtacgtcg aggagcgcga agccgcggtc gttgtagtgg
     3361 atgcgctgcg tcttcaggtc atggcgccag atcgcgatgc gaccgagctc gaccgcgagc
     3421 tcgagctgcg cattggcctc gcccagcgcg cgcgccgagt tgtagacgag ggtgtcgtcg
     3481 accatgatgc cgatcgcgcg gtcgggtttg ccttgcggcg agttcttgac ttcccattgc
     3541 gaatggatcc aacgggtcgt gccgtcgggg cgcagcacgc ggtagcgttg cgcgtagcgg
     3601 ccggccgcct gcgtggtctg ggtgtagctc atcagtgcgc ggtcgtccgg gtggatctgc
     3661 tggagggcct gcaggtgggt cggcgtgccg gcacgcgggt cgagccccca gaagccgaag
     3721 acgtggcgat cccagtgccc ctggcccgag ggaatcgcgc gctcccagac gccgagtcgg
     3781 ccgaattcct gcgccatgtc gaggagctcg gcctggcgct gggtctgctc cgcgagcttg
//
LOCUS       DASVHM010000648         1592 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_407253, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000648 DASVHM010000000
VERSION     DASVHM010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407253"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..683
                     /locus_tag="VF308_12035"
                     /pseudo
     CDS             1..683
                     /locus_tag="VF308_12035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010812783.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
     gene            complement(700..>1592)
                     /locus_tag="VF308_12040"
     CDS             complement(700..>1592)
                     /locus_tag="VF308_12040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HEX7437432.1"
                     /translation="VHAVDGVSFDIAAGETLGLVGESGCGKSTTGRCILRLIEPTSGE
                     VWFEGKDVTRARKDELRALARDMQIIFQDPYASLNPRMTVGAIVGEALIIHRLTTSRH
                     EFEARIVELLETVGLSADHMRRYPHEFSGGQRQRIGIARALAVSPKLVVCDEAVSALD
                     VSIQAQVINLLEDLQHQFNLTYIFIAHDLSVVEHISTRVAVMYLGRIVEIAPSKQLYT
                     QPLHPYTEALLSAVPIPDPQIKRKRITLQGDVPSPIRPPSGCHFHTRCPIARQPLCST
                     ETPELKLSAAGHWVACHLRG"
BASE COUNT          271 a          525 c          553 g          243 t
ORIGIN      
        1 acgcattcga tcaacggcgc gctgtacgtc aagatgccct acgacatggt caaggacttc
       61 gcgcccgtca cgctgctcgc gaccacgccg aacctgctgg tggtgaacaa cgacgtgccg
      121 gcgaagaacc tgaaggagtt catcgcgctc ggcaaaaagg aaggcaagat gaccttcgcc
      181 tcctccggat cgggcacctc gatccacgtg tcgggcgagc tcttcaagac catgaccggc
      241 atcgacatgg agcacatccc ctacaagggc cgcgccaccg cgatccccga cctgctcggt
      301 ggccgggtga cgatgatgtt cgacaacatg ccctcgagcc tgccgctggt gcgcgacggc
      361 aagctgcggg cgctcggcgt cacgagcgcg aagcgctcgg cggcggcgcc cgaaattccg
      421 accatcgcgg agcagggcct gcccggcttc gaggcggtgt cgtggttcgc cctgttcgcg
      481 cccgccggca cgcccaagac gatcgtcgac aagctgcagg ccgaagtgaa gaagatcatc
      541 ggctcgcccg aggtcggcaa tcgcctggcc gagattggct cgaggtggtc gggtcgacgc
      601 ccgaggaact ggcggcgtat cagcgcaccg aaatcacgaa gtgggccaag gtcgtcaagg
      661 actcgggcgc gaaggtcgag tgagcggcgc cgaggcgccc taaccccgca agtgacaagc
      721 cacccaatgc cccgccgcgc tcagcttcag ctccggcgtc tcggtgctgc acagcggctg
      781 ccgggcgatc gggcagcgcg tgtggaagtg gcagcctgaa ggcgggcgga tcgggctcgg
      841 cacgtcgccc tgcagcgtga tgcgcttgcg cttgatctgc gggtcgggga tcggcaccgc
      901 cgagagcagc gcttcggtgt acgggtgcag gggctgcgtg tagagctgct tcgaaggcgc
      961 gatctcgacg atgcggccca ggtacatcac cgccacccgg gtgctgatgt gctccaccac
     1021 cgaaaggtcg tgggcgatga agatgtaggt caggttgaac tggtgctgca ggtcctcgag
     1081 caggttgatc acctgcgcct ggatcgagac gtcgagggcc gagacggcct cgtcgcagac
     1141 caccagcttc ggactcacgg cgagcgcccg cgcgatgccg atgcgctggc gctggccgcc
     1201 cgagaactcg tgcggatagc ggcgcatgtg atcggcgctc aggcccaccg tctcgagcag
     1261 ctcgacgatg cgcgcctcga actcgtgccg gctcgtcgtg aggcggtgga tgatcagggc
     1321 ctcgccgacg atggcgccga ccgtcatgcg cgggttgagc gaggcgtacg ggtcctggaa
     1381 gatgatctgc atatcgcgcg ccagcgcgcg cagctcgtcc ttgcgggcgc gggtcacgtc
     1441 cttgccctcg aaccagacct cgcccgaggt cggctcgatc agccgcagga tgcagcgccc
     1501 ggtggtggac ttgccgcagc ccgattcgcc caccaggccg agcgtctcgc cggcggcgat
     1561 gtcgaagctc acgccgtcga ccgcgtgcac gc
//
LOCUS       DASVHM010000649         2869 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1346901, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000649 DASVHM010000000
VERSION     DASVHM010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1346901"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            38..1228
                     /locus_tag="VF308_12045"
     CDS             38..1228
                     /locus_tag="VF308_12045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006219291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HEX7437433.1"
                     /translation="MTMRSLVDPGVPAQPARAAPSLRAFLELAFRPLYLAGVAWALIA
                     IGIWVYAPQILTGPLQGVAWHAHEMLWGFIATIAVAFLMTAGANWTGINPLQGRALGI
                     ACGLWLIARVGFLAGGDGVFWVAAAAELGFFVFAAAAMMRAVYRARNARNYAVPWLIV
                     GLAAADALYLLAARGGDYVLLMKRLNAGLLVMALIALLISRRVIPFFAMRAVAGLKLP
                     MQTRTGQVQLGVCVVAVICLLAGQRLPTAIALGIAGLLSLLQLVRWRPYAVRANPLLW
                     ILYIGYAGLGVGLVMAACAAAGAGLPPALPVHMIAMAGFSVLIIGMVTRTALGHLGRP
                     LATDRSMLASYVLLLVAVALRLAAIAPSAFSQPALHLSAAAWIAALALYLWRFAPLLI
                     RPRS"
     gene            1266..1742
                     /locus_tag="VF308_12050"
     CDS             1266..1742
                     /locus_tag="VF308_12050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEX7437434.1"
                     /translation="MRLTTMTDYSMRLLMYVAKHPGRLCTIAEVARAYDISEAHLMKI
                     THQLGLGGWLETVRGKGGGMRLAAAPADINLGAVVRSIEPDFFLVDCLGSDTVCLLTG
                     SCQLTSIVSGALQRFMQHLDRYTLADLLPAAAKVTAKPKSVTRPVTFGKRLTVATS"
     gene            1853..2206
                     /locus_tag="VF308_12055"
     CDS             1853..2206
                     /locus_tag="VF308_12055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HEX7437435.1"
                     /translation="MTITLTEAAAEQIRSQIAKRGKGLGLRVGVKNVGCSGFTYTYEL
                     ADDLHAGDHLFEGHGAKLAVDPKSLAFIDGSRFDFVSEGMNKAFKVDNPNVDSTCGCG
                     ESFNLKAEAGQGTSA"
     gene            2203..>2869
                     /locus_tag="VF308_12060"
     CDS             2203..>2869
                     /locus_tag="VF308_12060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004174036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEX7437436.1"
                     /translation="MSALLQNLVNQPYKHGFVTDIESDVAAKGLNEDTIRLISTKKRE
                     PEWLLEFRLKAFRHWLTMTPPEWANVRYPKIDFQAISYYSAPRPKPKLASMDEVDPEL
                     LRTFEKLGVPMHERATLANVAVDVIFDSVSVATTYKAKLAEVGIIFGSISEAVQNHPE
                     LVKKYLGTVVPSGDNYYAALNSAVFTDGSFCYIPKGVKCPMDLSTYFRINTEETGQFE
                     RTLI"
BASE COUNT          473 a          979 c          908 g          509 t
ORIGIN      
        1 gccgggcagc gacgccgcaa tcgatcgccg tgcgcgaatg accatgcgta gcctcgtcga
       61 tccaggagtg cccgcgcagc ccgcacgcgc ggcgccgagc ctgcgggcat ttctcgagct
      121 cgcctttcgg ccgctgtatc tggccggagt cgcttgggcg ctgatcgcga tcggcatctg
      181 ggtctatgcg ccgcaaatat tgaccggccc cctgcagggc gtcgcctggc atgctcatga
      241 aatgctctgg ggcttcatcg cgacgatcgc ggtcgccttc ctgatgacgg cgggcgcgaa
      301 ctggaccggc atcaatccgc tgcagggcag ggcgctcggc atcgcctgcg gcctctggct
      361 gatcgcgcgc gtcggcttcc tcgccggcgg agacggagtg ttctgggtcg cggcggcggc
      421 cgagctcggc ttcttcgttt tcgccgctgc ggcgatgatg cgggcagtgt atcgcgccag
      481 gaacgctcgc aactacgcgg tgccgtggct catcgtcggc ctggccgctg ccgacgcgtt
      541 gtacctgctc gccgcgcgcg gcggcgacta cgtgctgctg atgaagcgtc tcaacgccgg
      601 actgctggtg atggcgctga tcgcgttgct gatttcccgt cgcgtgattc cgttcttcgc
      661 gatgcgcgca gtcgccggcc tgaagctgcc gatgcaaacg cgcacgggcc aggtccagct
      721 cggcgtctgc gtcgtcgcgg tgatctgcct gctcgccggc cagcggctgc ccacggccat
      781 cgccctcggc atcgccggcc tgttgtcgct gctgcaactc gtgcggtgga gaccctacgc
      841 ggttcgcgcc aatccgctgc tgtggattct ctacatcggc tatgccggcc tgggcgtcgg
      901 cctggtcatg gccgcgtgcg cagccgccgg tgccggcctg ccgcccgcgc tgcccgtgca
      961 catgatcgcg atggcaggtt tctcggtgtt gatcatcggc atggtcacgc gcaccgcgct
     1021 cggccacctc ggccggccgc tcgccaccga tcgcagcatg ctcgcgagct acgtgctgtt
     1081 gctggtggcc gtcgcgttgc gcctggccgc gatcgcgcct tcggccttca gccagccggc
     1141 gctgcacctt tcggcggcgg cctggatcgc cgcgcttgcc ctctaccttt ggcgcttcgc
     1201 gccgctgctg atccggccgc gttcatgacg acgaaaagcg ccgattgcac gaaccggagt
     1261 ccgccatgcg cctgacgacg atgaccgact attcgatgcg cctgctgatg tacgtcgcca
     1321 aacaccccgg gcgcctgtgc acgatcgcgg aggtggcgcg cgcctacgac atttcagaag
     1381 cgcacttgat gaagatcacg caccagctcg gcctcggcgg ctggctcgag acggtgcgcg
     1441 gcaaaggcgg tggcatgcgc ctcgcggccg cgcccgccga catcaatctc ggcgccgtgg
     1501 tgcgcagcat cgaacccgat ttctttctcg tcgactgtct cggcagcgac accgtgtgcc
     1561 tgctgaccgg gagttgccag ctgacgagca ttgtcagtgg tgccctgcag aggttcatgc
     1621 agcacctcga ccgctacacc cttgccgatc tgctaccagc cgccgcgaaa gtcacggcca
     1681 agccgaagtc tgtcacgcgg ccggtgactt tcggcaagcg gctcacggta gccacgagct
     1741 gagccgccga caggcgtcga acccaccacg caaagacccg acaagaccca acgtcaatga
     1801 ccccgaagtc ggtaacgccg acgcggtcgc cgccgcgcga aggaatccag ccatgaccat
     1861 caccctcacc gaagccgctg cagagcagat ccgcagccag atcgccaagc gcggcaaagg
     1921 cctgggcctg cgagtcggcg tcaagaacgt cggctgctcc ggcttcacct acacctacga
     1981 gctcgccgat gacctgcatg ctggcgatca tttgttcgaa ggccatggcg cgaaactggc
     2041 ggtcgacccg aagagcctcg ccttcatcga cggctctcgc ttcgacttcg tcagcgaagg
     2101 gatgaacaag gctttcaagg tcgacaaccc gaatgtcgac agcacctgcg gctgcggcga
     2161 gagctttaac ctgaaggccg aggccggcca gggaacgagc gcatgagtgc cctgctgcaa
     2221 aacctcgtca atcagcccta caaacatggc ttcgtcaccg acatcgagtc ggatgtcgcc
     2281 gccaagggct tgaacgaaga cacgatccgg ctgatctcga cgaagaagcg cgagcccgag
     2341 tggctgctcg agtttcgtct gaaggccttt cgccactggc tgacgatgac gccgcccgag
     2401 tgggccaacg tcaggtatcc gaagatcgat ttccaggcga tcagctacta ctcggcgccc
     2461 cggcccaagc cgaagctcgc cagcatggac gaggtcgatc ccgagctgtt gcgcacgttc
     2521 gaaaagctcg gcgtgccgat gcacgagcgc gcgacactgg ccaacgtcgc cgtcgatgtg
     2581 atcttcgaca gcgtctcggt cgcgaccacc tacaaggcca agctcgctga ggtcggcatc
     2641 atcttcggct cgatctcgga ggcggtgcag aaccatccgg agctggtcaa gaagtacctc
     2701 ggcaccgtgg tgccgagcgg cgataactac tacgcggcgc tgaattcggc ggtattcacc
     2761 gacggctcgt tctgctacat cccgaagggc gtgaagtgcc cgatggacct gtcgacctac
     2821 tttcgcatca acaccgaaga gaccggtcag ttcgagcgca ccctgatcg
//
LOCUS       DASVHM010000650         6208 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1199695, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000650 DASVHM010000000
VERSION     DASVHM010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6208
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1199695"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..354
                     /locus_tag="VF308_12065"
     CDS             <1..354
                     /locus_tag="VF308_12065"
                     /inference="COORDINATES: protein motif:HMM:NF024825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437437.1"
                     /translation="LARWAKRFGDTKMVHEIAVSQYQGIKLWAEAVKKAGSLDREKML
                     KVIESGISVEGPGGLVKIDPATHHASLDIKVMEVKNQKLTIKQTFKQRPPSDTAASCN
                     LLKNPNDNKQYEVTI"
     gene            394..1260
                     /locus_tag="VF308_12070"
     CDS             394..1260
                     /locus_tag="VF308_12070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006221601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437438.1"
                     /translation="MDYAAVVFLEILYMIAFLALTSAGLAVVFGMMRVINLAHGELVM
                     IGGYVTIASTRAGVDIFFSMLVLSPLVVGILGLVVERIVIRHLYGRMIDTMLATWGLS
                     LLMVGLVTLIFGNTPVSVTAPIQSYQVGAYQMGGYNLFIIAIAILLMLALWLVLRYTR
                     VGLVARGAMQNADIASSLGYNPQKIYMWTFTAGAALAGLAGGVMAPLTGLLPSSGSLY
                     IAKSFITVITGGAAVISGTLASSVIFGAVDQIVSFGSTPVIGEIAMLALAIILLRLMP
                     QGITGRFFRNST"
     gene            1257..2309
                     /locus_tag="VF308_12075"
     CDS             1257..2309
                     /locus_tag="VF308_12075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011808158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437439.1"
                     /translation="MTGGPDFGVGRIRWGWFIVGSLILLLLPAVTATNTPTLLLIWAL
                     FALSLGLMWGFAGILSFGHAAYFGLGAYTYAIASTNVGESTGPLLLAIVLPAAVAAVI
                     GAMMFYGRISDVYMGVITLVITLILFKFMNATAGDAYRIGAARMGGFNGIPAFPILNV
                     PGDPATTIFGTPFYYVVAVVLLLCYLLCRWILGSFFGRVLIGIRENEARVELLGYSAP
                     LYKTAIFTISGSMAGLAGCFFANWAEIVTPGVFSLGQSAEVIIWTIVGGLGTLAGPII
                     GAIVLGYLKLLLGQQTLIDNSLVLGLILVLVVLLLPSGLLPALTRWRARRDRASVSRR
                     QASSTRRRRGQRTDGS"
     gene            2306..3031
                     /locus_tag="VF308_12080"
     CDS             2306..3031
                     /locus_tag="VF308_12080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006221603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7437440.1"
                     /translation="MSETVLDTRDLSMRFGGVQAVNNVNFSLRERELRCLIGPNGAGK
                     STFFKCLTGQIRLDQTHGRVFIKGQDVTGWRAYEIVRLGVGIKTQVPSVMNGLNVEEN
                     LWLSARRVNSREAAQATVAEVIRQVSLEGIARRQVGELAHGQRQLVEIGIVLAQRPWL
                     LLLDEPAAGITGAEAEALVRIIHEVNQNATVVVVDHDMQFVRMLGGRVTVMHQGAILR
                     EGPVDEVLADAKVREVYIGSRAK"
     gene            3028..3552
                     /locus_tag="VF308_12085"
                     /pseudo
     CDS             3028..3552
                     /locus_tag="VF308_12085"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            4000..5517
                     /locus_tag="VF308_12090"
     CDS             4000..5517
                     /locus_tag="VF308_12090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017450211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX7437441.1"
                     /translation="MSMVKRPTLEQMKAIVGKLHMSMSDHEIGEYLEVLEGTMQAYDR
                     IDQLPDYLPEVRYPRTPGARPSAAENPLGAWYIKTEVKGAPYGPLAGKRVVLKDNICL
                     AGVPMMNGASTLEGYVPDIDATVVTRILDAGGTIVGKAHCEYFCLSGGSHTSASGPVH
                     NPYKMGYSAGGSSSGPAALVGSGEIEMAIGGDQGGSIRMPASFSGCYGMKPTHGLVPY
                     TGAMPIEATLDHVGPMTATVADNALLLEVIAGADGLDPRQYNVRVDKYTAALGRGVAG
                     MRIGVLTEGFQFDACEPDVVQKVRQAAERLRSLGAIVEEISIPMHVDGLPIWTPIALE
                     GLQAQMMHGNGMGFNWQGLYTTSLLDAHANWRARANQLSRTLKISMLAGEYFIKEYRG
                     HYYAKAQNLARLLRKTYDQALSRHELLLMPTTPMKATPLPPQDAPLALYCQRAFEMLP
                     NTAPFDVSGHPAMNVPCGLSAGLPVGMQLVGAHYNESTIYRAAHAFEQLGDWRNF"
     gene            5529..>6208
                     /locus_tag="VF308_12095"
     CDS             5529..>6208
                     /locus_tag="VF308_12095"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437442.1"
                     /translation="MSANPFRSDWLEGGRSDQLRPHGTLSYVSGSTDEPLRFITLPQL
                     LEKTVGRHGSRDAAIFDAEGLRLSWYDLKRKADELAVGLLALGLRRGNRVGIWAPNRH
                     EWLVTQFATARVGLVLVNINPAYRKTELEYALNKVGCRALVMARRYKSSDYLGMLGEI
                     APEIHFRGASEVLDSVRLPDLKHVVLLGSEPVPPRCLAYAQVLALGGPAQRARLDALT
                     AALDPDDA"
BASE COUNT          999 a         2170 c         2050 g          989 t
ORIGIN      
        1 ctcgcgcgct gggccaagcg cttcggcgac accaagatgg tccacgaaat cgccgtgtcg
       61 caataccagg gcatcaagct ctgggccgaa gccgtcaaga aggcgggctc gctggaccgc
      121 gagaagatgc tgaaggtgat cgaatcgggt atcagcgtcg aagggcccgg cggcctcgtg
      181 aagatcgacc cggcgacaca ccacgcctcg ctcgacatca aggtgatgga ggtcaagaac
      241 cagaagctga cgatcaagca gacgttcaag cagcgtcctc cgagcgacac cgccgcatcc
      301 tgcaacctgc tgaagaaccc gaacgacaac aagcagtacg aggtgacgat ctgagcttcg
      361 caggcatgcc cgccggacgc tgaagccgag gtcgtggact acgccgccgt cgtctttctc
      421 gagatcctct acatgatcgc cttcctcgcg ctgaccagcg cggggctggc cgtcgtgttc
      481 gggatgatgc gggtcatcaa cctcgcgcac ggcgagctcg tgatgatcgg cggctacgtc
      541 acgatcgcca gcacacgcgc cggcgtcgac atattctttt cgatgctggt gctctcgccg
      601 ctggtcgtcg gcatcctcgg cctggtggtc gagcgcatcg tgatccggca cctctacggg
      661 cggatgatcg acacaatgct ggcgacctgg ggcctgagcc tgctgatggt cgggctggtc
      721 acgctgatat tcggcaacac cccggtcagc gtcaccgcgc cgatccagtc gtaccaggtg
      781 ggcgcctacc agatgggcgg ctacaacctc ttcatcatcg ccatcgccat cctgctgatg
      841 ctggcgctct ggctggtgct gcgctacacc cgtgtcggcc tggtcgcgcg cggcgcgatg
      901 cagaacgccg acatcgcctc atcgctcggc tacaacccgc agaagatcta catgtggacc
      961 ttcaccgccg gcgccgcgct ggcgggcctc gcaggtggcg tgatggcgcc gctcaccggc
     1021 ctcttgccgt cgtcggggtc gctctacatc gccaagtcgt tcatcacggt gatcaccggg
     1081 ggcgccgcgg tcatctccgg cacgctcgca agctcggtca tcttcggcgc cgtcgaccag
     1141 atcgtctcgt tcggctcgac gccggtcatc ggcgagatcg cgatgctggc gctagcgatc
     1201 atcctgctgc gcctgatgcc gcagggcatc accggccgct tcttcaggaa ctcgacatga
     1261 cgggcggccc cgacttcggc gtcggccgga tccgctgggg ctggttcatc gtcgggtcgc
     1321 tgatcctgct gctgctgcct gcggtcaccg cgacgaacac accgaccctg ttgctgatct
     1381 gggcgctgtt cgcgctgtcg ctcgggctga tgtggggctt cgccggcatc ctcagcttcg
     1441 gtcacgccgc ctacttcggc ctcggcgcct acacctacgc gatcgcctcg acgaacgtgg
     1501 gcgagagcac cgggccgctg ctgctcgcaa tcgtcctgcc ggcggcggtc gccgcggtga
     1561 tcggcgcgat gatgttctac ggccgcatca gcgacgtcta catgggcgtg atcacgctcg
     1621 tcatcacgct gatcctcttc aagttcatga acgcgaccgc gggcgatgcc taccgcatcg
     1681 gcgccgcccg catgggcggc ttcaacggca ttccggcgtt cccaattctc aacgtgcccg
     1741 gcgaccccgc gacgacgatc ttcggcacgc cgttctatta cgtcgtcgcc gtcgttctgc
     1801 tgctctgcta cctgctgtgc cgctggattc tcggatcctt cttcggccgc gtgctcatcg
     1861 gcatccgcga aaacgaggcg cgggtggaac tgctagggta cagcgcgccg ctctacaaga
     1921 ccgcgatctt cacgatcagc gggtcgatgg ccggcctcgc cgggtgcttc ttcgcgaact
     1981 gggccgagat cgtcacgccg ggcgtgttca gcctcggcca gtctgccgaa gtgatcatct
     2041 ggaccatcgt cggcggcctc ggaacgctcg ccggcccgat catcggcgcg atcgtgcttg
     2101 gctacctgaa gttgctgctc ggccagcaga cgctgatcga caactcgctg gtgctgggcc
     2161 tgatcctcgt gctggtggtt ctgctgctgc cgagcggcct gctgccggcg ctgacgcgct
     2221 ggcgcgcccg ccgcgaccgg gccagcgtca gccggcgcca ggcgagcagc acgcgacgcc
     2281 ggcgcggcca acggacggac ggatcgtgag cgagaccgtg ctcgacacgc gcgacctgtc
     2341 gatgcgcttc ggcggagtgc aggcggtcaa caacgtcaat ttctcgctgc gcgaacgcga
     2401 actgcgctgc ctgatcggcc cgaacggcgc cggcaagagc acgttcttca aatgcctgac
     2461 cgggcagatc cggctcgacc aaacgcacgg ccgggtcttc atcaagggcc aggacgtgac
     2521 cggctggcgt gcctacgaga tcgtccgcct cggcgtcggt atcaagaccc aggtgccgtc
     2581 ggtgatgaac gggctgaacg tggaggagaa cctctggctg tcggcgcgcc gcgtcaacag
     2641 ccgcgaggcc gcccaggcca ccgtcgccga ggtgatacgg caggtatcgc tcgaaggaat
     2701 cgcccggcgc caggtcggcg agctcgcgca cgggcagcgc cagctcgtcg agatcggcat
     2761 cgtgctggcg cagcggccgt ggctgctgct gctcgacgag ccggccgccg gcatcaccgg
     2821 ggccgaggcc gaggcgctgg tgcgcatcat ccacgaggtg aaccagaacg ccacggtcgt
     2881 cgtcgtcgac cacgacatgc agttcgtgcg catgctcggc ggccgggtca cggtcatgca
     2941 ccagggcgcc atcctgcgcg aagggccggt cgacgaggtg ctggccgacg cgaaggtgcg
     3001 cgaggtctac atcgggagcc gggcgaaatg agcgaaccgg aatccgcacc cggcaccgcc
     3061 gccgcgtccg ctcccgacgt cgtcctcgac gtcaccgagc tgcgtgcggc gtatgggcac
     3121 attcccgtct tgcacggcat cacgttccag ctccatgccg gcgaggcggt cggcatcgtc
     3181 ggccacaacg gcgtcggcaa gacgacgttc ctgaagacgc tgatcggtct ggtgccgagc
     3241 accgcaggac ggatctcgat cgacggcatc gacgtcacga ggatgaaggc gcacgaccgc
     3301 agccggctcg gcatcggcta tgtgccccag ggccgcggca tcctgcccgg gctcaccgcg
     3361 ctcgagaacc tgcgcctggc ctggacggca gactccggcg acaccgagac ggcggcgatc
     3421 gaacggattg tcgacactct gccgcgcctg gcctccatcc tcgaccgcaa gggcggcgcg
     3481 ctctcgggcg gcgagcagca gatcctcgcc ctcggccgcg ccctgatgcc gctgccgtgg
     3541 ctgttgctgc tcgacgagcc gtccgaaggc atccagcctt cgatcgtgca ggagatcggc
     3601 gagatcctcg cgaccttgca caagcgcgat cggctctcgc tggtcgtcgt cgagcagaac
     3661 ctcgacctcg tactcgacgt cgccgaccgc atcgtcgtga tggagcgcgg gcggatcgag
     3721 cgcgaagtcg atgcgcaccg cgttcaggcc ggtggcctgg ccgatctgct cgggatgggc
     3781 gcaatgcgga tgacgcggcc gagttcgccg ccacgatccg cccacgcgac gaaagccgtc
     3841 gccgcattgc cccgctcgcc gatgcccggc gcgacgccga caccgcccct gccttcgaac
     3901 gccggtctcg tgcgcagcgg cagtgccgat ccgcgcagcg tcgttccacg ttcctcatcc
     3961 ccaccggctt cgtccgccgc aatctcccga ggtgacacca tgtcgatggt caagcgaccc
     4021 acgctcgagc aaatgaaggc gatcgtcggc aagctccaca tgagcatgtc ggaccacgag
     4081 atcggcgaat acctcgaggt gctcgaaggc acgatgcagg cctacgaccg tatcgaccag
     4141 ctgcccgact acctgcccga ggtgcgctac ccgcgcacgc cgggagcacg gccttcggcg
     4201 gccgagaacc cgctcggcgc ctggtacatc aagaccgaag tcaagggcgc gccgtacggg
     4261 ccgctcgccg gcaagcgggt cgtgctgaag gacaacatct gcctggccgg cgtgccgatg
     4321 atgaacggcg cctcgacgct cgaaggctac gtgcccgaca tcgacgcgac ggtcgtgacg
     4381 cgaatcctcg acgccggcgg cacgatcgtc ggcaaggcgc actgcgaata cttctgcctg
     4441 tccggtggca gccacacgtc ggccagcggt ccggtgcaca acccgtacaa gatgggctat
     4501 tcggcgggcg gctcttcgag cggcccggcg gcgctggtcg gctccggcga aatcgaaatg
     4561 gcgatcggcg gcgaccaggg cggttcgatc cggatgccgg cgtcgttctc aggctgctac
     4621 ggcatgaagc cgacccacgg cctcgtgccc tacaccggcg ccatgccgat cgaggcgacg
     4681 ctcgatcacg tcggcccgat gacggccacc gtcgccgaca acgcgctcct gctcgaggtg
     4741 atcgccgggg ccgacgggct cgacccgcgc cagtacaacg tgcgcgtcga caagtacacg
     4801 gccgcgctcg gacgcggcgt tgccggcatg cgaatcggcg tgctgactga aggtttccag
     4861 ttcgacgcct gcgagcccga cgtggtgcag aaggtgcgac aggccgcgga gcgcttgcgc
     4921 agcctcggcg cgatcgtcga ggagatctcg atcccgatgc acgtcgacgg cctgccgatc
     4981 tggaccccga tcgcgctcga gggcctgcag gcgcagatga tgcacggcaa cggcatgggc
     5041 ttcaactggc agggcctcta caccaccagc ttgctcgacg cccacgccaa ctggcgcgca
     5101 cgcgcgaacc agctgtcgcg cacgctgaag atctcgatgc tcgccggcga atacttcatc
     5161 aaggagtacc gcggccacta ctacgcgaag gcgcagaacc tggcccggct gctgaggaag
     5221 acctacgacc aggcgctgtc gcgccacgag ctgctgctga tgccgacgac gccaatgaag
     5281 gccacgccgc tcccgccgca ggacgcgccg ctcgcgctct actgccagcg cgcgttcgag
     5341 atgctgccca ataccgcgcc gttcgacgtc agcggccatc cggcgatgaa cgtgccgtgt
     5401 ggcctgtccg ccgggttgcc ggtgggcatg cagctcgtcg gcgcgcacta caacgagtcg
     5461 acgatctacc gcgccgccca tgccttcgag cagctgggcg actggcgcaa cttctgacag
     5521 ggcgcagcgt gtcggcgaat ccgtttcgct cggactggct cgaaggcggc cgctccgacc
     5581 agctcaggcc gcacgggacg ctgtcgtacg tgtccggttc caccgacgag ccgctgcgct
     5641 tcatcacgct gccgcagctg ctcgaaaaga cggtcgggcg ccacggctcg cgcgacgccg
     5701 cgatcttcga cgccgaaggc ctgcggctgt cctggtacga cctgaagcgc aaggccgacg
     5761 agctcgcggt cggcttgctg gcgctgggcc tgcgccgcgg caaccgggtc ggcatctggg
     5821 cgccgaaccg ccacgagtgg ctggtcaccc agttcgcgac cgcacgggtc ggcctcgtgc
     5881 tcgtcaacat caacccggcg tatcgcaaga ccgagctcga atacgcgctc aacaaggtcg
     5941 gctgccgggc actcgtgatg gcgcgccgct acaagagcag cgactacctc ggcatgctcg
     6001 gcgagatcgc gccggagatc cacttcaggg gcgcgagcga ggtcctcgac agcgtgcgcc
     6061 tgcccgacct gaagcacgtg gtgctgctcg gcagcgaacc ggtgccgccg cgttgcctcg
     6121 cgtacgcgca ggtgctcgcc ctcggcggcc cggcgcagcg ggcccggctc gatgcgctga
     6181 cggcggcgct cgacccggac gacgcgat
//
LOCUS       DASVHM010000651         3970 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_332942, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000651 DASVHM010000000
VERSION     DASVHM010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3970
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332942"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            14..1036
                     /locus_tag="VF308_12100"
     CDS             14..1036
                     /locus_tag="VF308_12100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008328545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033225 - ATPase-coupled
                     2-aminoethylphosphonate transporter activity [Evidence
                     IEA];
                     GO_function: GO:0033226 - 2-aminoethylphosphonate binding
                     [Evidence IEA];
                     GO_process: GO:0033223 - 2-aminoethylphosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2-aminoethylphosphonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HEX7437443.1"
                     /translation="MKALLGATVLAACFGAFAQKSQLTVYTALETDQIKAYENGFNKV
                     NPNIELKWVRDSTGVITAKLLAEKANPQADVVMGVAASSLALLDSQGMLIPYAPLNLD
                     AIMSQYQDKKRPPAWFGMDVWGATVCFNTVEAQKKGLPKPETWKDLTKPIYKGQIVMP
                     NPASSGTGYFDVTAWLTLWGDDNGKGGGWKYMDALHENIAQYTHSGSKPCNMAGTGEY
                     VLGISFEYRANTNKAKGAPIDLVFPKEGLGWDLEAFAIHKGTKKLEAAQKLADWASSK
                     DAMLLYGKNFAITAQPGVAEPLKNVPADYEKRLVKMDFKYAADNRERILAEWTKRYDS
                     KSEPRK"
     gene            1066..2124
                     /locus_tag="VF308_12105"
     CDS             1066..2124
                     /locus_tag="VF308_12105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006485771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033225 - ATPase-coupled
                     2-aminoethylphosphonate transporter activity [Evidence
                     IEA];
                     GO_process: GO:0033223 - 2-aminoethylphosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2-aminoethylphosphonate ABC transporter
                     ATP-binding protein"
                     /protein_id="HEX7437444.1"
                     /translation="MSDFLRLQGVEKNFGSFQALRHIDLTIARGEFVCFLGPSGCGKT
                     TLLRIIAGLETQSAGTIWQADRDISRLPPAERDYGIVFQSYALFPNLNVTDNVAYGLV
                     NRKVPRRAIAERVEELLKLVGLPGSGAKFPAQLSGGQQQRIALARALATSPGLLLLDE
                     PLSALDALERVRLRQEIRSLQRKLGVTTIMVTHDQEEALSLADRIVVMNQGAIEQVGT
                     PMEVYRDPTSPFVADFVGKINVLAGRLHPGRRLHIGASRFACEHDTEAERDVKIYLRP
                     EDVLARPIAPGDSNVFNGAIDKIEFLGSYCLVRVTSPEIGPQPVTVYLSLNFLAEQGL
                     EVGSRLPLRLLPERMRFF"
     gene            2140..3861
                     /locus_tag="VF308_12110"
     CDS             2140..3861
                     /locus_tag="VF308_12110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007858509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033225 - ATPase-coupled
                     2-aminoethylphosphonate transporter activity [Evidence
                     IEA];
                     GO_process: GO:0033223 - 2-aminoethylphosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2-aminoethylphosphonate ABC transporter
                     permease subunit"
                     /protein_id="HEX7437445.1"
                     /translation="MSAVLPLHAAPSVRQRAHWTDRIAHAVLLLIAAALVVFLALPLF
                     SILIKALQSPNGAFVGVANFASYLASPALLQSLWNSVWVSLLVTVVTVPLAFGFAYAL
                     ARSCMPAKGLFRTLTLVPLLAPSLLSALSLIYWFGNQGAALGLLRAFGFASIYGAPGV
                     VLAECFAVFPHALMILIAALSLADARLYEAADALGTATRRKFFTITLPGAKYGLISAA
                     LVSFTLVMTDFGIPKVIGGNFNMLATDVFKLVIGQQDFQRGAVVGLLLLTPAVVTYAI
                     DWLVQRKQTAMLGARAVAYRPKPAQGFDLAMTAYCVLIAALMLAMIGMAVFASFASYW
                     PYNLTPSLKHYTMGFVDAEVGSAFVNSLELATGTAIFGTLLVFVGAYMLEKTRGAAAI
                     RPVVRLLAMLPMAVPGLVLGLGYIFFFNLPTNPLNGLYHTLALLTACTIVHFYTTGHL
                     TAVTALKSLDPEFEAVSASLKVPFYKTFWRVTLPICTPALVDIARYFFINAMTTISAV
                     VFLYSPDTKLASVTILNLDEAGDAGPAAACAVLIAVASTVASLLFMGAGRWIDRRTQA
                     WRQPAGQ"
BASE COUNT          630 a         1364 c         1299 g          677 t
ORIGIN      
        1 gaattcgggt tcattgaagg cgctgctcgg cgcgaccgtg ctcgccgcgt gcttcggcgc
       61 gttcgcccag aagagccaac tcaccgtcta cacggcgctc gagaccgacc agatcaaggc
      121 ctacgagaac ggcttcaaca aggtcaatcc gaacatcgag ctgaagtggg tgcgcgactc
      181 gaccggcgtg atcaccgcga agctgctcgc cgaaaaggcg aacccgcagg ccgatgtcgt
      241 gatgggtgtg gccgcatcga gcctcgcgct gctcgacagc caggggatgc tgatcccgta
      301 cgcgcccctg aatctcgacg cgatcatgag ccagtaccag gacaagaagc ggccgccggc
      361 ctggttcggg atggacgtct ggggtgcgac ggtctgcttc aacaccgtcg aggcgcagaa
      421 gaagggcctg ccgaagcccg agacctggaa ggacctgacc aagccgatct acaagggcca
      481 gatcgtgatg ccgaatccgg cctcgtcggg aaccggctac ttcgacgtca ccgcctggct
      541 cacgctctgg ggcgacgaca acggcaaggg cggcggctgg aagtacatgg atgccctcca
      601 tgaaaacatc gcccagtaca cccattcagg ctccaagccc tgcaacatgg ccggcaccgg
      661 cgagtacgtg ttgggcattt cgttcgagta ccgcgccaac accaacaagg ccaagggcgc
      721 gccgatcgac ctggtgtttc cgaaggaggg gctgggctgg gacctggagg cgttcgcgat
      781 ccacaagggc acgaagaagc tcgaggccgc gcagaagctc gccgactggg cttcgagcaa
      841 ggacgcgatg ctgctctatg gcaagaactt cgcgatcacg gcccagccgg gcgtcgccga
      901 gccattgaag aacgtgccgg ccgactacga gaagcgtctg gtcaagatgg acttcaagta
      961 cgccgccgac aaccgggaac gcatcctcgc cgagtggacg aaacgatacg actccaagag
     1021 cgagccgcgg aagtagcccc atcgggcggc ctgtcgagag ccgcgatgag tgacttcctg
     1081 cgcctgcaag gcgtcgaaaa gaacttcggc tccttccagg cgctgcgtca catcgacctg
     1141 acgatcgccc gcggcgagtt cgtctgcttc ctcggccctt cgggctgcgg caagaccacc
     1201 ctgctgcgca tcatcgcagg gctcgagacg cagtcggccg gcaccatctg gcaggccgat
     1261 cgcgacattt cccggctgcc gccggccgag cgcgactacg gcatcgtgtt ccagtcgtac
     1321 gcgctgttcc ccaacctgaa cgtcaccgac aacgtcgcct acggcctcgt caaccgcaag
     1381 gtgccgcgcc gggcgattgc cgagcgcgtc gaggaactgc tcaagctcgt cggcctgccc
     1441 ggcagcggcg cgaagttccc ggcgcagctc tccggcggcc agcagcagcg gatcgcgctg
     1501 gcgcgcgcac tcgcgacgtc gccggggctg ttgctgctcg acgagccgct ctcggcgctc
     1561 gatgcgctcg agcgggtgcg gctgcgccag gagatccgct cgctgcagag gaagctcggc
     1621 gtcacgacga tcatggtgac gcacgaccag gaggaggcgt tgtcgctggc cgaccggatc
     1681 gtcgtgatga accagggcgc gatcgagcag gtcggcacgc cgatggaggt ctatcgcgat
     1741 ccgacctcgc cgttcgtcgc cgatttcgtc ggcaagatca acgtgctcgc cggccggctg
     1801 cacccgggcc ggcgcctgca catcggcgcc agccgcttcg cctgcgagca cgacaccgag
     1861 gccgagcgcg acgtcaagat ctacctgcgt ccggaagacg tgctcgcgcg gccgatcgcg
     1921 cccggcgaca gcaacgtctt caatggcgcg atcgacaaga tcgagttcct cggctcgtac
     1981 tgcctggtcc gggtcacgtc gcccgagatc ggcccgcagc cggtgacggt gtacctgtca
     2041 ctgaacttcc tggccgagca ggggctcgag gtcggcagcc gcctgccgtt gcgcctgttg
     2101 cccgagcgga tgcggttctt ctagggccgg gaaacgtcga tgtccgccgt cctcccgctg
     2161 cacgccgcgc cctcggtcag gcagcgcgcg cactggaccg accggatcgc gcacgcggtg
     2221 ctgctgctga tcgcggcggc gctcgtcgtc ttcctcgcgc tgccgctgtt ctcgatcctc
     2281 atcaaggcgc tgcaatcgcc gaacggcgcg ttcgtcggcg tcgccaactt cgcgagctat
     2341 ctcgcatcgc cggcgctgct gcagtcgctc tggaacagcg tctgggtctc gctgctcgtg
     2401 accgtcgtga cggtgccgct ggcgttcggc ttcgcctacg cgctggcgcg cagctgcatg
     2461 ccggcgaagg gcctgttccg cacgctgacg ctggtgccgc tgctcgcgcc gtccctgctg
     2521 tcggcgctct cgctgatcta ctggttcggc aaccagggcg ccgcgctcgg gctgctgcgc
     2581 gcgttcggct tcgccagcat ctacggagcg ccgggcgtcg tgctggccga gtgcttcgcg
     2641 gtctttccgc atgcgctgat gatcctgatc gccgcgcttt cgctggccga tgcgcgccta
     2701 tacgaggcgg ccgacgcgct cggcactgcg acccggcgca agttcttcac gatcacgctg
     2761 cccggcgcga agtacgggtt gatctcggcc gcgttggtca gcttcacgct ggtgatgacc
     2821 gacttcggga tcccgaaggt gatcggcggc aacttcaaca tgctcgcgac cgacgtcttc
     2881 aagctcgtga tcggccagca ggacttccag cgcggcgcgg tcgtcgggct tctgctgctg
     2941 acgccggcgg tcgtgaccta cgcgatcgac tggctggtgc agcgcaagca gaccgcgatg
     3001 ctcggcgcgc gcgccgtggc gtaccggccg aagcctgcgc aaggcttcga tctcgcgatg
     3061 accgcctatt gcgtcctgat cgccgcgctg atgctggcga tgatcgggat ggcggtgttc
     3121 gcgtcgttcg cgagctactg gccgtacaac ctgacgccca gcctgaagca ctacacgatg
     3181 ggcttcgtcg atgccgaggt cggcagcgcg ttcgtcaaca gcctcgaact cgcgaccggc
     3241 accgcgatct tcggcacgct gctggtcttc gtcggcgcct acatgctcga gaagacgcgc
     3301 ggcgccgcgg cgatccggcc ggtggtgcgg ctgctcgcga tgctgccgat ggcggtgccc
     3361 gggctggtgc ttggcctcgg ctacatcttc ttcttcaatc tgccgaccaa tccgctgaac
     3421 ggcctctacc acacgctcgc gctgctgacg gcctgtacga tcgtccactt ctacacgacc
     3481 gggcacctga ccgcggtcac cgcgctgaag tcgctcgatc ccgagttcga ggcggtatcg
     3541 gcgtcgctga aggtgccgtt ctacaagacg ttctggcgcg tcacgttgcc gatctgcacg
     3601 ccggcgctgg tcgacatcgc gcgctatttc ttcatcaacg cgatgacgac gatctcggcg
     3661 gtcgtcttcc tgtattcgcc cgacaccaag ctcgcctcgg tgacgatcct gaacctcgac
     3721 gaggccggcg acgccggccc cgcggccgcg tgcgcggtgc tgatcgcggt cgcctcgacc
     3781 gtcgcgagcc tgctgttcat gggcgccggc cgctggatcg atcggcgcac ccaggcctgg
     3841 cgccagccgg ccggccaatg agccttcaag gagaccccta gtggaccgcg acgccattct
     3901 gctgaccccc ggtccgttga ccacaaccct gcgcaccaag ctcgcgatgc tgcgcgactg
     3961 gggctcgtcg
//
LOCUS       DASVHM010000652         3113 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1347095, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000652 DASVHM010000000
VERSION     DASVHM010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3113
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1347095"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /gene="kdpC"
                     /locus_tag="VF308_12115"
     CDS             complement(<1..584)
                     /gene="kdpC"
                     /locus_tag="VF308_12115"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009665707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HEX7437446.1"
                     /translation="MNALLQSIRPAVSVFVLLTAVTGVAYPLLTTAVAQAAFADAANG
                     SIIIVGGKPVGSSLIGQSFGGAKYFWSRPSATSPMANNGLSSGGSNLGSNNPALLDAV
                     KGRIEALRTADPGNSTPVPVDLVTASGSGLDPHISLAAAYYQVPRIARERKLGVDAVR
                     TLVESHAERPFLGVVGEPMVNVLALNLALDSAGGP"
     gene            complement(624..2669)
                     /gene="kdpB"
                     /locus_tag="VF308_12120"
     CDS             complement(624..2669)
                     /gene="kdpB"
                     /locus_tag="VF308_12120"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010401407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HEX7437447.1"
                     /translation="MFAAALVKPALRDSFTKLHPTQQVRNPVMFVVYVGAILITGLWI
                     QALVSKGEAPAWFIGANALWLWFTVLFANFAEALAEGRSKAQAASLRGLKKRGIAKKL
                     QEPRHGSSWIPVETDELRIGAVLLVEAGDMMPCDGEVIEGVASVDESAITGESAPVIR
                     ESGGDFASVTGGTRVLSDWIIVRCTVNPGEAFIDRMIAMVEGAKRRKTPNEVALTILL
                     VLLTIIFLYATVTLLPYSLYAVDTTKLGVPVTITVLVALLVCLIPTTIGGLLSAIGVA
                     GMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASTFLPAPGVTEQQLAD
                     AAQLASLADETPEGRSVVILAKQKFGIRERELAAHEATFLQFSAQTRMSGVNWQGRKI
                     RKGAADAIRKLVESQGGAFPPEVSRGVDDVARRGSTPLVVADGTRVLGVVELKDIVKG
                     GIKERFGELRRMGIKTVMITGDNKLTAAAIGAEAGVDDVLAEATPEAKLTLIRKYQAE
                     GYMVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQ
                     MLMTRGSLTTFSIANDVAKYFAIIPAAFASTYPQLDALNLMRLASPSSAILAAVIFNA
                     LIIVALIPLALRGVKYRALGAAALLRRNTLIYGLGGLIVPFIGIKIIDMLLVVLGLV"
     gene            complement(2729..>3113)
                     /locus_tag="VF308_12125"
     CDS             complement(2729..>3113)
                     /locus_tag="VF308_12125"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019657712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HEX7437448.1"
                     /translation="DAGRAGMANPGAQGFSEVLYAFSSATNNNGSAFAGLSANTPFYN
                     GLLGIAMWFGRFTVIVPVLALAGALAAKKRVQRIGEDGAMTAMPTHGPLFVVLLISSV
                     LLLGALTYVPAIALGPVVEQLNLYK"
BASE COUNT          520 a         1039 c         1055 g          499 t
ORIGIN      
        1 gggccgcctg ccgagtccag cgccaggttg agcgccagca cgttgaccat cggttcaccg
       61 accacgccga ggaacgggcg ctcggcgtga ctctcgacca gcgtccgcac cgcgtcgacg
      121 ccgagcttgc gttcgcgcgc gatgcgcggc acctggtagt acgcagccgc gaggctgatg
      181 tgaggatcca gaccgctgcc cgacgcggtg accaggtcca ccggcaccgg cgtcgagttg
      241 cccggatctg cggtgcgcaa ggcctcgatg cggcccttca cggcgtcgag caacgccggg
      301 ttgttcgagc cgaggttgga gccgccggaa gacaggccgt tgttggccat cgggctggtc
      361 gccgaggggc ggctccagaa atacttcgcg ccgccgaacg actggccgat gagcgacgag
      421 ccgaccggct tgccgccgac gatgatgatc gagccgttcg ccgcgtccgc aaacgccgcc
      481 tgcgccaccg cggtcgtgag cagcgggtag gccacgccgg tgactgcggt cagcagcacg
      541 aaaaccgata cggctggacg aatggactgt agcaatgcgt tcatgatcct gatccctttg
      601 gagtcttgct tgccgaggcg gctctacacc agtccgagca cgaccagcag catgtcgatg
      661 atcttgatgc cgatgaacgg cacgatcaga ccgcccaggc cgtagatcaa cgtgttgcgg
      721 cgcaggagcg cggcggcgcc gagggcgcgg tacttcacac cccgcaaggc aagcgggatc
      781 agtgccacga tgatcagcgc attgaagatg accgcagcca ggatcgcgga cgacggcgac
      841 gcgagccgca tcaggttgag cgcatcgagt tgcggataag tgctggcgaa cgccgccgga
      901 ataatcgcaa agtacttcgc gacgtcgttg gcgatcgaga acgtggtgag cgagccgcgc
      961 gtcatcagca tctgcttgcc gatctcgacc acctcgatca gcttggtcgg attgctgtcg
     1021 aggtcgacca tgttgccggc ttccttggcc gcctgcgtgc cgctgttcat cgccacggcc
     1081 acgtcggcct gggccagggc cggcgcgtcg ttggtgccgt cgccagtcat cgcgaccatg
     1141 tagccttcgg cctggtactt gcggatcagc gtgagcttgg cttccggcgt ggcctcggcg
     1201 aggacgtcgt cgacgccggc ctcggcgccg atcgccgccg cggtgagctt gttgtcgccg
     1261 gtgatcatca cggtcttgat gcccatccgg cgcagctcgc cgaagcgctc cttgatgcca
     1321 cccttgacga tgtccttcag ctcgacgacg ccgagcacgc gggtgccgtc ggcgacgacg
     1381 agcggcgtgc tgccgcgccg cgcgacgtcg tcgaccccgc gcgacacctc gggcgggaac
     1441 gcgccaccct gcgactcgac gagcttgcgg atcgcgtcgg ccgcaccctt gcgaatcttc
     1501 cgtccctgcc agttgacgcc gctcatgcgc gtctgcgcgc tgaactgcag gaaggtcgcc
     1561 tcgtgcgccg cgagctcgcg ttcgcggatg ccgaacttct gcttcgcgag tatgacgacg
     1621 ctgcggcctt cgggcgtctc gtcggcgagc gacgcgagct gcgccgcgtc ggcgagctgc
     1681 tgttcagtga cgccgggcgc cggcaagaag gtcgaagcct ggcggttgcc gagcgtgatg
     1741 gtcccggtct tgtcgaggag cagcacgtcg acgtcgccgg cggcctccac cgcgcggccc
     1801 gaggtcgcga tcacgttggc gccgagcatg cggctcatgc cggccacgcc gatggccgag
     1861 agcaggccgc cgatcgtggt cggaatcagg cagacgagca gcgcgacgag caccgtgatc
     1921 gtcaccggca cgccgagctt ggtcgtgtcg acggcgtaga gcgaatacgg cagcagcgtg
     1981 acggtcgcat acaggaagat gatcgtcagc aacaccagca ggatcgtcaa cgcgacctcg
     2041 ttgggcgtct tgcggcgctt cgcaccctcg accatcgcga tcatccggtc gatgaacgcc
     2101 tcgccggggt tcacggtgca acgcacgatg atccagtccg acagcacgcg ggtgcccccg
     2161 gtgaccgacg cgaaatcgcc gccggattcg cggatcaccg gagccgattc gcccgtgatc
     2221 gcgctctcgt cgaccgacgc cacgccttcg atcacctcgc cgtcgcacgg catcatgtcg
     2281 ccggcctcga ccagcaacac cgcaccgatg cggagctcgt cggtctcgac cggaatccac
     2341 gacgagccgt gcctcggctc ctgaagtttc ttggcgatgc cgcgtttctt cagcccgcgc
     2401 aggctcgccg cctgggcctt gctgcggccc tcggccagcg cctcggcaaa gttggcgaag
     2461 aggacagtga accagagcca gagcgcgttc gcgccgatga accaggccgg cgcctcgccc
     2521 ttggagacga gggcctggat ccacagccca gtgatcagga tcgcgccgac gtagacgacg
     2581 aacatcaccg ggttgcgcac ctgctgggtc ggatgcagct tcgtgaacga atcgcgcagc
     2641 gcgggcttga ccagcgcggc agcgaacatg tcggtcttgc ggggattcag cgccgaaacg
     2701 gtgacgtcgg cagtcgttac agcgttgttc atttgtagag gttcagttgt tcgaccaccg
     2761 gtccgagcgc aatggcgggc acgtaggtca gggcacccag cagcagcacc gacgagatca
     2821 gcaacaccac gaagagcggg ccatgggtcg gcatcgccgt catcgcaccg tcttcaccga
     2881 tgcgctgcac ccgtttcttg gcggcgagcg cgccggcgag cgcgagcacc ggcacgatca
     2941 cggtgaagcg gccgaaccac atcgcgatgc cgagcagccc gttgtagaac ggcgtgttcg
     3001 cggagaggcc cgcgaaggca ctgccgttgt tgttggtcgc cgaggagaac gcatagagca
     3061 cttcggagaa gccctgcgca ccggggttgg ccatgccggc ccggccggca tcg
//
LOCUS       DASVHM010000653         1622 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_478155, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000653 DASVHM010000000
VERSION     DASVHM010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478155"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..1480)
                     /locus_tag="VF308_12130"
     CDS             complement(179..1480)
                     /locus_tag="VF308_12130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009515475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase family
                     protein"
                     /protein_id="HEX7437449.1"
                     /translation="MADHLFKAETLAIHAGQIPDAATGARALPIYQTTSFVFDSAEHA
                     ASLFNLQTFGNVYSRLSNPTVAALEERIAALECGRAALASASGMAAEAIALLTLLQQG
                     DHVVAAGALYGGSVSMLAVNLAKLGIETTFVDATSPEAFAAAVRPNTRALFAESIGNP
                     SLSVLDIGAVADVAHAHGVPLIIDNTVPSPFLCTPIAFGADIVVHSATKYLAGHGTTL
                     GGVMVESGKFPWDNGKFPGMTEPSAGYHGVRFFETFGDFGFSMRARMETLRVYGAALS
                     PMSAWQILQGVETLPVRMERHCGNALKVAEFLRADPRVGWVNYPGLADHPQHALVQRQ
                     MRSVDGRPGASGLLAFGVRGGLEAGVRFIEAAQFLSHLANIGDTRTLIIHPASTTHRQ
                     LDAAQQVAAGVLPDMVRISVGIEHIDDILWDIDQALGKATG"
     gene            complement(1493..>1622)
                     /locus_tag="VF308_12135"
     CDS             complement(1493..>1622)
                     /locus_tag="VF308_12135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEX7437450.1"
                     /translation="LARAAGLDSVMNHCVKIEHARLFGGLHWAGVNTGVISARRAG"
BASE COUNT          252 a          550 c          565 g          255 t
ORIGIN      
        1 gcgtctgcca ccaggaatag cggcgcctgc cgtggatgac ggcttcgaga tcgccgaaca
       61 cctcggccgt ccgttcgacg aagctcaccg gcgagagggc gacgaaattg gcggtgccct
      121 tgtcgaggtc acggtcgtag atgttctgca tgtcggtctc ctgtcgcatt cgcgccggct
      181 atccggtggc cttgccgagc gcctggtcga tgtcccagag aatgtcgtcg atgtgttcga
      241 tgccgaccga gatgcgcacc atgtcgggca gcacgcccgc ggcgacctgt tgcgccgcgt
      301 cgagctgtcg gtgcgtcgtc gaggccgggt ggatgatgag tgtgcgcgtg tcgccgatgt
      361 tggcgagatg actcaggaac tgcgccgcct cgatgaagcg cactcccgcc tccaggccgc
      421 cgcgcacgcc gaaggcgagc agccccgatg cgccgggccg gccgtcgacg ctgcgcatct
      481 ggcgctgcac cagggcgtgc tgcgggtgat cggcgaggcc cgggtagttg acccagccga
      541 cgcgcggatc cgcgcgcagg aactcggcca cctttagcgc gttgccgcaa tggcgctcca
      601 tgcgcaccgg cagggtctcg acgccttgca ggatctgcca cgcgctcatc ggcgaaagcg
      661 cggcgccgta gacgcgcagc gtctccatgc gggcccgcat cgagaagccg aaatcgccga
      721 aggtctcgaa gaacctgacg ccgtgatagc ccgccgacgg ttcggtcatg cccgggaact
      781 tgccgttgtc ccacgggaac tttccgctct cgaccatcac gccgccgagc gtcgtgccgt
      841 gcccggccag gtacttggtc gccgaatgga cgacgatgtc ggcgccgaac gcgatcggcg
      901 tacacaggaa cggcgacggc accgtgttgt cgatgatcaa gggcacgccg tgggcatgcg
      961 cgacatccgc caccgcgccg atgtcgagaa cactcaggct cgggttgccg atgctttcgg
     1021 cgaagagcgc ccgggtgttc ggcctgacgg ccgccgcgaa cgcctcgggc gacgttgcgt
     1081 cgacgaaggt cgtctcgatg ccgagcttgg cgaggttcac ggcgagcatg ctgaccgagc
     1141 cgccgtagag cgcaccggcg gccaccacgt ggtcgccctg ttgcagcaag gtcaacagcg
     1201 cgatcgcctc ggccgccatg ccgctcgccg atgccagcgc ggcacggccg cattcgagcg
     1261 ccgcgatccg ctcctcgagc gcggcgacag tcggattcga gagccgcgaa tagacgttgc
     1321 cgaacgtctg caggttgaaa aggctcgccg cgtgctcggc actgtcgaac acgaagctcg
     1381 tcgtctggta gatcggcagc gcgcgggcgc cggtcgcggc gtccggaatc tggccggcgt
     1441 ggatggccag cgtctcggcc ttgaagaggt ggtccgccac gcgccgcccc cttcagccgg
     1501 cgcgccgcgc cgagatcacg ccggtgttga cgccggccca gtgcagcccg ccgaagagcc
     1561 gcgcatgttc aatcttgacg cagtggttca tcaccgagtc gaggccggcg gcgcgcgcca
     1621 gc
//
LOCUS       DASVHM010000654         1607 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1199767, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000654 DASVHM010000000
VERSION     DASVHM010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1199767"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..368
                     /locus_tag="VF308_12140"
     CDS             <1..368
                     /locus_tag="VF308_12140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEX7437451.1"
                     /translation="KKRYISPATREEVYAIYYDQLRRKIEERGTRNFPESQGKKLYGE
                     LTMNVTVDAEGRVVETEVVGSSSSRVLDRRAVAIVVAAAPFGRFNSAMRRKADQRVIT
                     SRFKFTREEGFETTLSAAP"
     gene            385..1233
                     /gene="aroE"
                     /locus_tag="VF308_12145"
     CDS             385..1233
                     /gene="aroE"
                     /locus_tag="VF308_12145"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEX7437452.1"
                     /translation="MDRYVVIGSPVAHSQSPFIHAAFARQTGQAMEYGRLLCPPDGFE
                     ATLRAFAAQGGRGCNVTVPFKFDAFRVAHAHTPRAALAGACNALRHDAEGWLGDNTDG
                     AGLLRDIEHNAGVALQGRRILLLGAGGAAAGVLGPLLAARPAQLVVANRTPHKAIDLL
                     RTHRAAIEAIRAAAVDLRATSLADCGEAYDVVINATASSMLGAPAPVSPAVLAPGALA
                     VDMMYGPAAKGFLEWAKAHGATGRDGLGMLVEQAAEAFELFRGVQPATAPVLAALRRH
                     MAESVE"
     gene            1230..>1607
                     /locus_tag="VF308_12150"
     CDS             1230..>1607
                     /locus_tag="VF308_12150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003081114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEX7437453.1"
                     /translation="MKAAGGSLLRLIALVLVSALALQLFFLVRVALMAWVDPQSTTFQ
                     RSEIWRIATQKGALPWRQQWVPYDRIAQNLKRAVIASEDAGFAEHSGIEWDALEKAWE
                     RNQKAEATAERLNAQAQRHGANES"
BASE COUNT          255 a          568 c          553 g          231 t
ORIGIN      
        1 cgaagaagcg ctacatcagc ccggcgacgc gcgaagaggt ctatgcgatc tactacgacc
       61 agctgcgccg gaagatcgaa gagcgcggca cgcgcaactt ccccgagagc cagggcaaga
      121 agctgtacgg cgaactgacc atgaacgtca cggtcgatgc cgagggacgg gtcgtcgaga
      181 ccgaggtcgt gggctcctcg agctcgaggg tgctcgaccg ccgcgccgtc gcgatcgtcg
      241 tcgccgccgc gccgttcggg cgcttcaact cggccatgcg ccgcaaggcc gaccagcgcg
      301 tgatcacctc gcgcttcaag ttcacgcgcg aggagggttt cgaaaccacg ttgagtgcgg
      361 ccccctaggg cctgttcgca tcccatggac cgctacgtcg tcatcggcag cccggttgcc
      421 cacagccagt cgcccttcat tcatgcggcg ttcgcccggc agaccgggca ggcgatggaa
      481 tacgggcgcc tgctctgtcc gccggatggc ttcgaggcga ccctgcgcgc cttcgcggcg
      541 caaggcggcc gcggctgcaa cgtgacggtg ccgttcaagt tcgatgcctt tcgcgtcgcc
      601 cacgcccaca cgccgcgcgc tgcactggcc ggcgcctgca acgcgctgcg ccacgacgcc
      661 gagggctggc tcggcgacaa cacggacggt gccggcctgc tgcgcgacat cgaacacaat
      721 gcgggcgtcg ccttgcaagg gcggcgcatc ctgttgctgg gagcgggcgg ggccgcggcg
      781 ggcgtgctcg gaccgctgct ggccgcgcgg ccggcgcagc tcgtggtcgc caaccgcacg
      841 ccgcacaagg cgatcgatct cctgcgcacc caccgtgcgg ccatcgaggc gatccgcgca
      901 gcggcggtcg atctgcgcgc cacgtcgctg gccgattgcg gcgaggccta cgacgtcgtc
      961 atcaacgcca ccgccagcag catgctcggc gcgccggcac cggtctcgcc cgcggtgttg
     1021 gcaccgggcg cgctcgcggt cgacatgatg tacgggcctg ccgcaaaggg cttcctagag
     1081 tgggcgaagg cccacggcgc gaccggacgc gacggcctcg gcatgctggt cgagcaggcg
     1141 gccgaggcct tcgagctctt tcgcggcgtg cagcccgcca ccgcgccggt gctcgcggcc
     1201 ctgcgccgac acatggccga gtcagtcgaa tgaaggcggc cggcgggtcg cttctgcggc
     1261 tcattgccct ggtgctggta tcggcgctgg ccctgcaact cttctttctc gtgcgcgtcg
     1321 cgctgatggc gtgggtggat ccgcaatcga ccactttcca acgctccgag atctggcgca
     1381 tcgcgaccca gaagggcgcg ctgccctggc gtcagcaatg ggttccctac gaccgcatcg
     1441 cgcagaacct gaaacgcgcc gtcatcgcat ccgaagacgc cgggttcgcc gagcacagcg
     1501 gcatcgaatg ggatgcgctc gagaaagcct gggagcgcaa ccagaaggcc gaggccacgg
     1561 ccgaacgact caatgcacag gcccagcggc acggcgcgaa cgagagc
//
LOCUS       DASVHM010000655         3007 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1347172, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000655 DASVHM010000000
VERSION     DASVHM010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1347172"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1358
                     /locus_tag="VF308_12155"
     CDS             <1..1358
                     /locus_tag="VF308_12155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013539551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF6537 domain-containing protein"
                     /protein_id="HEX7437454.1"
                     /translation="LVTGVGGTGVVTVGAVIAMAAHLEGHAASVLDFMGFAQKGGSVL
                     SFVRLAERASALNQVRIDAQQADAVLGCDIVVAATPEALAAVRHGRTRVLVNLHEIPV
                     AESLSNPDADLKVDKLLAKLEFAAGAERVETLDAQMLAEDFLGDSIVSNILAMGYAWQ
                     RGLVPLGLAAMLRAIELNGVAVENNIKAFSLGRLAAGDPVACRELLHEPDPATLHAET
                     LDELMARAVLHLTGYQNARYAERYQTLVAATRAAESALPAADPALPLTRAVATQMRRL
                     MAYKDEYEVARLYTDGEFERQLGAQFEGDFTLEFHMAPPALIKAKGSAAPKKVRFGAW
                     LFPALKVLAKGKILRGTPFDPFGRTEERRLERRLVDDYEARVRELLAMLTPQRLQIAV
                     AVANVPHAIRGYGHVKFANLAIARARESELLHRFDPARYPRPAGAPVAGQFRGIPVNS
                     A"
     gene            1597..>3007
                     /locus_tag="VF308_12160"
     CDS             1597..>3007
                     /locus_tag="VF308_12160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012655421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HEX7437455.1"
                     /translation="MITELEFKSLAAQGHNRIPLIAEAFADLETPLSLYLKLAYTGGG
                     SGSASGGGKHSFLLESVVGGERFGRYSFIGLPARTLLRATGFHTEVVTDGAVVETAQG
                     NPLDFIAAYQKRFQVALRPGLPRFCGGLAGYFGYDAVRFIEPRLAKTTKTGGIDTPDI
                     LLLQCEELAVIDNLSGRLYLIVYANPAEPEAFSRAKRRLNELTDKLKYSVSAPAVRRG
                     PSHGVEREFSKQDYIAAVERAKEYIAAGDMMQVQVGQRLKKRYTESPLSLYRALRSLN
                     PSPYMYFYDMGDFQIVGASPEILVRQEETPEGPKVTIRPLAGTRPRGATPEQDRALEE
                     ELSNDPKERAEHVMLIDLARNDIGRIAKTGSVKVTEAFTVERYSHVMHIVSNVEGLLQ
                     PGMTSLDVLKATFPAGTLTGAPKIRAMEIIDELEPVKRGIYGGACGYLSFAGDMDVAI
                     AIRTGIVKDQTLFVQAAAGI"
BASE COUNT          487 a         1032 c         1037 g          451 t
ORIGIN      
        1 tgctcgtcac cggcgtcggc ggcaccggcg tcgtcaccgt cggcgcggtc atcgccatgg
       61 ccgcgcacct cgaaggccac gcggcgagcg tgctcgactt catgggcttc gcgcaaaagg
      121 gcggctcggt gctgtcgttc gtgcggctcg ccgaacgggc gtcggcgctg aaccaggtgc
      181 gcatcgacgc ccagcaagcc gacgcggtgc tcggctgcga catcgtcgtc gccgcgacac
      241 cggaggcgct ggcggccgtg cgccatgggc ggacccgtgt gctcgtcaat ctgcacgaga
      301 ttccggtggc cgaatcgctc agcaatcccg acgcggacct gaaagtcgac aagttgctgg
      361 cgaagctcga atttgccgcc ggagccgagc gcgtcgaaac cctcgacgcg cagatgctgg
      421 cggaggattt cctcggcgac tcgatcgtct ccaacatcct cgcgatgggc tacgcctggc
      481 agcgcggcct ggtgccgctc ggcctcgccg cgatgctgcg cgcgatcgag ctcaacggcg
      541 tcgcggtcga gaacaacatc aaggcgttct cgctcggccg gctcgctgcc ggtgatccgg
      601 tcgcctgccg cgagctgctg cacgagcccg acccggcgac gctgcatgcg gagacgctcg
      661 acgaactgat ggcgcgcgcc gtgctgcacc tgaccggcta ccagaatgcg cgctatgccg
      721 agcgctatca gacgctcgtc gcggcgacgc gggcggcgga gtcggcgctg ccggctgcgg
      781 acccggccct gccgctgacg cgcgccgtcg ccacccagat gcgccgcctc atggcctaca
      841 aggacgaata cgaagtggcg cggctctaca ccgacggcga gttcgagcgc cagctcggcg
      901 cgcagttcga gggcgacttc acgctcgagt tccacatggc gccgccggcg ctgatcaagg
      961 cgaagggatc ggcggcgccg aagaaggtgc gcttcggggc atggctcttc ccggcgctca
     1021 aggtgctcgc gaagggcaag atcctgcgcg gcacgccgtt cgatccgttc ggtcgcaccg
     1081 aggaacgccg gctcgagcgc cggctggtcg atgactacga ggcccgggtg cgcgaattac
     1141 tggcaatgct cacgccgcag cgcctgcaga tcgcggtcgc ggtcgcgaac gtgccgcacg
     1201 cgatccgcgg ctatggtcac gtgaagttcg cgaacctcgc gatcgcgcga gcgcgggaaa
     1261 gcgaactgct gcaccggttc gacccggcgc gctatccgcg tccggccggt gcgccggttg
     1321 cggggcagtt ccgggggatt ccggtcaact cggcctgacg cccgaattcg aatcgggggg
     1381 ctgctacaat tttgggcatg ttcacgccgc gcaagtccgc aacaaggtcg cacgaccggg
     1441 gagcttggcc ctggcggggc cgcgcgccgc gcgcctgaag gcggagcggc ctcgcgcgcg
     1501 ccgactccac cggcggctcc tggtcgccgc ctcgaagtga acgattccta gcgggcgcgg
     1561 cctgacgcac ccgccggcct gtggagggcc gaagccatga tcaccgagct tgagttcaag
     1621 agcctcgcgg cccagggcca caaccgcatt ccgctgatcg ccgaagcctt cgccgacctc
     1681 gagacgcccc tctcgctgta cctgaagctc gcctacacgg gcgggggttc cggatcggcg
     1741 tcgggcgggg gcaagcacag cttcctgctc gaatcggtcg tcggcgggga gcgtttcggg
     1801 cgctactcct tcatcggctt gccggcgcgc acgctgctgc gcgcgaccgg gtttcacacc
     1861 gaggtcgtca ccgacggcgc ggtcgtcgag actgcgcagg gcaatccgct cgacttcatc
     1921 gccgcgtacc agaagcgctt ccaggtggcg ctgcggccgg gtctgccgcg cttttgcggc
     1981 ggcctggccg gctacttcgg ctacgacgcg gtgcgcttca tcgagccgag gctcgcgaag
     2041 acaacgaaga ccggcggcat cgacacgccg gacatcctgc tgctgcagtg cgaggaactc
     2101 gccgtcatcg acaacctgtc gggacggctc tacctgatcg tctatgcgaa tccggccgag
     2161 cccgaggcct tctcgcgcgc gaagcggcgc ctgaacgagc tgaccgacaa gctgaagtac
     2221 agcgtgtccg cgccggcggt gcgacgcggt ccgtcgcatg gcgtcgaacg cgagttctcg
     2281 aaacaggact acatcgccgc ggtcgagcgg gccaaggaat acatcgccgc cggcgacatg
     2341 atgcaggtcc aggtcgggca acgcctgaag aagcgctaca ccgagtcgcc gctcagcctc
     2401 taccgtgcgc tgcgctccct gaacccgtcg ccttacatgt atttctacga catgggcgac
     2461 ttccagatcg tcggcgcgtc accggaaatc ctggtgcgcc aggaggagac gccggaaggc
     2521 ccgaaagtga cgatccgccc gctcgccggg acgcggccgc gcggcgccac gcccgagcag
     2581 gaccgggcgc tcgaggagga gctctcgaac gacccgaagg agcgcgccga gcacgtgatg
     2641 ctgatcgacc tggcgcgaaa cgacatcggc cggatcgcga agaccggcag cgtcaaggtg
     2701 accgaggcgt tcacggtcga acgctattcg cacgtgatgc acatcgtcag caacgtcgaa
     2761 gggctgctcc agccgggcat gacgagcctc gacgtgctga aggcgacctt tcccgccggc
     2821 acgctgaccg gtgcgccgaa aatccgggcg atggagatca tcgacgagct cgagccggtc
     2881 aagcgcggca tctatggcgg cgcctgcggt tacctcagct ttgccggcga catggacgtg
     2941 gcgatcgcga ttcgcaccgg catcgtcaag gaccagacgc tgttcgtgca ggccgcggcc
     3001 ggcatcg
//
LOCUS       DASVHM010000656         2403 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_913880, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000656 DASVHM010000000
VERSION     DASVHM010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_913880"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..698)
                     /locus_tag="VF308_12165"
     CDS             complement(<1..698)
                     /locus_tag="VF308_12165"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF013662.4"
                     /note="part of NADH-ubiquinone oxidoreductase complex I;
                     shuttles electrons from NADH, via FMN and iron-sulfur
                     (Fe-S) centers, to quinones in the respiratory chain; NuoF
                     is part of the soluble NADH dehydrogenase fragment, which
                     represents the electron input part of NADH dehydrogenase;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit F"
                     /protein_id="HEX7437456.1"
                     /translation="MTGRKIIMTFPVTETSHLLADYRARGGYATLEKALREMRPEQIT
                     KEVATSGILGHGGAAFPAGRKWGVIKLNDEQPHYLCANADEGEPGTFKDRWILENAPH
                     LLLESMLIAAYALQVRNAFVYIRGEFDLPYRRLAAAVEEAYAAGYFGERILGTDFACD
                     IVIYRGAGSYVCGEASGLITSIEGKKGYPRNRPPRLTVRGLYQRPTVINNVETLANVV
                     AIVAGGGEAFRKIGT"
     gene            complement(695..1162)
                     /gene="nuoE"
                     /locus_tag="VF308_12170"
     CDS             complement(695..1162)
                     /gene="nuoE"
                     /locus_tag="VF308_12170"
                     /inference="COORDINATES: protein motif:HMM:TIGR01958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HEX7437457.1"
                     /translation="MKHLIPEFDAMRRRYPPGTESSLVLPCLRRIQEDRGFVADSDIA
                     ELAEYIPVPRIQIEEVLAHYTQYRRAPIGRWHLQVCRNLSCSMRGAEGALGHLCRKLG
                     IEPGETTADGRFTLSTAECLGSCGTAPVVMVNDAYHENMSPARLDALLQELHK"
     gene            complement(1159..2385)
                     /gene="nuoD"
                     /locus_tag="VF308_12175"
     CDS             complement(1159..2385)
                     /gene="nuoD"
                     /locus_tag="VF308_12175"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEX7437458.1"
                     /translation="MDAPFRPIANPVRSIYEQTLREDSVVVNIGPSHPATHGTVQIIA
                     ELDGERVLRTDVHCGYLHRGFEKECEDHTWHNLIPYVDRLNYVSALINDFAYCGAVEE
                     LMGVQITPRCRFLRTLLSEYSRLVDHVTCLAAGLMELGAMTAFLYLVMIRDYMYEHLA
                     ALTGARVTYTYGRIGGLARDLPAGWLARMEEILVQYEEFVARVHALVDRNRIFIDRMR
                     NVGVISTADALSYGYTGVILRSTGVPRDLRKDTPYLAYAELDFDVPVGIKGDNYDRYF
                     VRMREMDESVYMMRQLAQMLPEGPINVDDRRCTFPEKHLVYSEIESLINHFKLVMDGP
                     AVPAGEAYVAHESPNGELGFYLVSTGGGTPYKVHCRAPSFVHMGGVHLMLNGGQLADI
                     VPTFGSINMIGGECDR"
BASE COUNT          356 a          774 c          871 g          402 t
ORIGIN      
        1 gtgccgatct tgcggaaggc ctcgccgccc ccggcgacga tggcgaccac gttggccagc
       61 gtctcgacgt tgttgatgac ggtcggccgc tggtacaggc cgcgcacggt cagccgcggc
      121 ggccggttgc gcgggtagcc cttcttgcct tcgatcgacg tgatcagccc ggaggcttcg
      181 ccgcagacgt agctgccggc gccgcgatag atcacgatgt cgcaggcgaa gtcggtgccc
      241 aggatgcgct cgccgaagta gccggcggcg tacgcttcct ccaccgcggc ggcgaggcgc
      301 cggtacggca ggtcgaactc gccgcggatg tagacgaagg cgttgcgcac ctgcagcgcg
      361 taggcggcga tcagcatcga ctcgagcagc aggtgcggcg cgttctccag gatccagcgg
      421 tccttgaagg tgccgggctc gccctcgtcg gcgttggcgc acaggtagtg cggctgctcg
      481 tcgttgagct tgatcacgcc ccacttgcgg ccggccggga aggcggcgcc gccgtggcca
      541 aggatgccgg aggtcgccac ttccttggtg atctgctcgg gccgcatctc gcgcagcgcc
      601 ttctcgagcg tcgcgtagcc gccgcgggcg cggtagtcgg ccagcaggtg cgaggtctcg
      661 gtgaccggga aggtcatgat gatcttgcgg cccgtcactt gtgcagctcc tgcagcaatg
      721 cgtcgagccg ggccgggctc atgttctcgt ggtacgcgtc gttgaccatc accaccggcg
      781 ccgtgccgca cgagcccagg cattccgccg tgctcagggt gaagcggccg tcggccgtgg
      841 tctcgccggg ctcgatgccg agcttgcgac acaggtgccc gagcgcgccc tcggcgccgc
      901 gcatcgagca cgacaggttg cggcagacct gcagatgcca gcggccgatc ggcgcgcgcc
      961 gatactgcgt gtagtgcgcc agcacctcct cgatctggat gcgcggcacg gggatgtatt
     1021 cagccagctc ggcgatgtcg ctgtcggcga cgaagccccg gtcttcctgg atccggcgca
     1081 ggcatggcag caccagcgac gactcggtgc ccggagggta gcgcctgcgc atggcgtcga
     1141 attcggggat caggtgcttc accggtcgca ctccccgccg atcatgttga tcgagccgaa
     1201 ggtggggacg atgtcggcga gctggccgcc gttgagcatc aggtgcacgc cgcccatgtg
     1261 cacgaagctg ggcgcgcggc aatgcacctt gtaaggcgtg ccgccgccgg tgctgacgag
     1321 gtagaagccg agctcgccgt tcggactctc gtgcgcgacg taggcctcgc cggcgggcac
     1381 cgcgggcccg tccatcacca gcttgaagtg gttgatcagc gattcgatct cgctgtagac
     1441 gagatgcttc tcggggaagg tgcagcggcg gtcgtcgacg ttgatcggcc cctcgggcag
     1501 catctgcgcc agctgccgca tcatgtagac cgactcgtcc atctcgcgca tgcgcacgaa
     1561 gtagcggtcg tagttgtcgc ccttgatgcc gaccggcacg tcgaagtcga gctcggcgta
     1621 ggccaggtag ggcgtgtcct tgcgcaagtc gcgcggcacg ccggtgctgc gcaggatgac
     1681 gccggtgtag ccatagctca gcgcgtcggc ggtgctgatg acgccgacgt tgcgcatgcg
     1741 gtcgatgaag atgcggttgc ggtcgaccag ggcgtggacg cgggcgacga attcctcgta
     1801 ctggacgagg atttcctcca tccgcgcgag ccagcccgcg ggcaggtcgc gcgccaggcc
     1861 gccgatgcgc ccgtaggtgt aggtcacccg cgcgccggtc agcgccgcca ggtgctcgta
     1921 catgtagtcg cggatcatca cgaggtagag gaaggccgtc atcgcgccca gctccatcag
     1981 cccggcggcc aggcaggtga cgtggtcgac caggcgcgag tactccgaca gcagggtgcg
     2041 cagaaagcgg cagcgcggcg tgatctgcac gcccatcagc tcctcgacgg cgccgcagta
     2101 ggcgaaatcg ttgatcagcg ccgagacgta gttcagccgg tcgacgtagg ggatcaggtt
     2161 gtgccaggtg tggtcctcgc actccttctc gaagccgcgg tgcaggtagc cgcagtgcac
     2221 gtcggtgcgc agcacgcgct cgccgtcgag ctcggcgatg atctgcactg tgccgtgcgt
     2281 cgccgggtgc gacgggccga tgttgacgac gactgagtcc tcgcgcagcg tctgctcgta
     2341 gatcgagcga acggggttgg cgatggggcg gaagggggcg tccacggcgg gccttcagct
     2401 gcg
//
LOCUS       DASVHM010000657         2410 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_696298, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000657 DASVHM010000000
VERSION     DASVHM010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_696298"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..543)
                     /locus_tag="VF308_12180"
     CDS             complement(<1..543)
                     /locus_tag="VF308_12180"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEX7437459.1"
                     /translation="MSAGRCIDFGINCPTAIFAPWTPRALYELILSPLHAALQGKTEL
                     IIVPDGVLWDLPFQALQSSARRYLVEDMAVSYAPSITVLREMMRRRSATPARRTLLAF
                     GNPANERGALPETEDEVRRIAQVYGPSSRTYIGADAREDRWKTEAPNYRVVHLAAHGV
                     VDNASPLYSHLVLARPERGSR"
     gene            complement(882..2252)
                     /locus_tag="VF308_12185"
     CDS             complement(882..2252)
                     /locus_tag="VF308_12185"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7437460.1"
                     /translation="MIAVGEGGRAEPLLVENERISAEIGDKNGMAEASSALGRLRNMQ
                     ARYDEARVFHMRSFELWNEIGDQLGVAIALNNVGNMYQAVGDYVMALEYYQRSLDGLE
                     RLGDRRRSATVLDNMGVIARRLGDYGRGLDLAQRALAIRESFQDRVGIAKSYDSLSEV
                     YQAQGNYGAALAALAKSLDLRRAIGRVHATAEALNNIAVVYEAQGSYEQAVKYLRQSL
                     ALNNAKVGDQSLVAEIHTHLGELFLLQGQLTRAAQSLKRSLAISRASDYKLEAADARY
                     VLGRVYIALRQFDEAYLTLKECLAFRDAAGDRRGRAVVLIEMAELDRRRGRLQDGLDR
                     ATEAERLAGLMELPDVQWRALTLIGRLQVARSRPAGAREAFDRAIALIEGMRAQNPGG
                     EETRSRFFGDRLAPYQERMALAFAASNPVEALSFAERSKARAPRRHSRRRRSRHQGDD
                     RRGTHA"
BASE COUNT          375 a          835 c          777 g          423 t
ORIGIN      
        1 gcggctgccg cgttccgggc gggcgagcac gagatgcgag tacaaggggc tcgcgttgtc
       61 aaccacacca tgcgcggcga ggtggacgac gcgataattc ggcgcttccg tcttccaccg
      121 atcttcgcgt gcatcggcgc cgatgtaggt gcggctcgac gggccgtaca cctgggcgat
      181 gcgacgcact tcgtcttccg tttcgggcag cgcgcctctc tcgttggcgg ggttcccgaa
      241 cgccagcagc gtccgccgag ccggcgtggc gctgcgacgc cgcatcattt cgcgcagcac
      301 cgtgatcgac ggcgcgtacg acaccgccat gtcctcgacg agatagcggc gagcgctcga
      361 ctgcagggcc tggaacggaa ggtcccacag cacgccgtcg gggacgatga tcagttcggt
      421 ctttccctgg agcgcggcgt gcaacgggct caggatcagt tcgtagagcg cgcgcggagt
      481 ccacggcgcg aagatcgcgg ttggacagtt gatcccgaaa tcgatgcacc tgccggccga
      541 gatcggttgc ggtcgtgttc agcgtcaccg tgacgatgcc cgaggcggtg acgacgagcg
      601 cgaacgtccg atcgtgtccg gcgacgaatt cgacaatcgc ggcctccggg cccggcacca
      661 agcgtcgcgc ctcggcggca ctgatgacgg gcaccgcggc gcggttgatt ctgagctcgg
      721 gatgcgctgc gtacaaccgc gactgaaact cctcgtagtc gaggcgtttc gactcgcgtt
      781 tcctcctgag atccgacaac tgcgtctcgt tgggtgacgc cgcctgcgcc gccagcacga
      841 gctcgctgtt gatggaactc aacgatgcgc ggagctcgac ctcacgcgtg cgttcctcgg
      901 cggtcatcgc cttggtgacg gctgcgccgt cgcctcgaat gacgtcgagg agcgcgcgcc
      961 ttcgagcgct ctgcgaacga cagcgcctcg acggggttcg acgcggcgaa ggcgagagcc
     1021 atccgttcct ggtacggcgc gaggcgatct ccgaaaaagc ggcttcgggt ctcctcgccg
     1081 ccgggattct gtgctcgcat accttcgatg agcgcgatcg cacggtcgaa ggcctcgcgc
     1141 gcgcccgcgg gccgcgaccg cgcgacctgc agccgtccga tgagcgtcag cgcccgccac
     1201 tgcacgtccg gcagttccat caggccggcc agccgctcgg cttccgtcgc ccgatcgagg
     1261 ccgtcctgaa ggcggccgcg ccgccggtcg agctccgcca tttcgatcaa cacgactgcg
     1321 cggccgcgcc gatcgccggc tgcgtctcga aacgcgaggc attctttcag ggtcagatac
     1381 gcctcgtcga actggcgcag cgcgatgtac acgcgtccaa gcacatagcg ggcatcggcc
     1441 gcctcgagct tgtagtcaga cgcacggctg atcgccaggc tgcgcttcag cgactgcgca
     1501 gcgcgcgtga gctgtccctg cagcagaaac agctcaccga ggtgggtgtg gatttcggcg
     1561 acgagcgact ggtcgccgac cttcgcgttg ttcagcgcca gtgactgccg caggtatttc
     1621 accgcctgtt cgtagctacc ctgcgcttcg tacaccaccg cgatgttgtt gagtgcttcg
     1681 gccgtggcgt ggacccggcc gatcgcccgg cgcaggtcga ggctcttggc cagggccgcg
     1741 agtgccgctc cgtaattgcc ctgcgcctgg tacacctccg acagcgagtc gtaactcttg
     1801 gcgatgccga cacgatcctg aaacgactcg cgtatcgcca gcgccctctg ggccagatcg
     1861 aggccgcgac cataatcacc gagtcgcctg gcaatcacgc ccatgttgtc gagcacggtc
     1921 gcgctgcgcc gtctatcgcc gagccgctcg agcccgtcga ggctccgctg gtaatactcc
     1981 agcgccatga cgtaatcgcc gaccgcctgg tacatgttgc cgacgttgtt caaggcgatg
     2041 gcgacgccca gttgatcgcc gatctcgttc cagagctcga agctgcgcat gtgaaagacg
     2101 cgcgcttcgt catagcgcgc ctgcatgttc cgcagccggc ccagggcgct cgacgcctcc
     2161 gccatcccgt tcttgtcgcc gatctccgcg ctgatgcgct cgttctcgac cagcagcggt
     2221 tcggcgcgcc cgccttcgcc gaccgcgatc aacaccccgc cgtagccata gagcgccgac
     2281 gccagcgacg tgcggtccgc gcgccgcctc gccatcgcaa cggcacgctc gaagatccgt
     2341 cgcgatccgg cgtagtcgtt ctgatccgag agttccctgc cgcactcgac caatcgcttg
     2401 gaactttcgg
//
LOCUS       DASVHM010000658         2132 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_333016, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000658 DASVHM010000000
VERSION     DASVHM010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333016"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..411)
                     /locus_tag="VF308_12190"
     CDS             complement(<1..411)
                     /locus_tag="VF308_12190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006461767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase N-terminal domain-containing
                     protein"
                     /protein_id="HEX7437461.1"
                     /translation="MSIHVALNHVTHYRYDRPIQLGPQVVRLRPAPHSRTRILSYSMR
                     VEPTKHFINWQQDPQSNYLARLVFPDKTSSLRIEVDLVAEMAVLNPFDFFLEPSAEKF
                     PFAYDPELAVELAPYLHKTESTPRFQAYLDSIPRQ"
     gene            complement(505..1521)
                     /locus_tag="VF308_12195"
     CDS             complement(505..1521)
                     /locus_tag="VF308_12195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019700779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-E domain-containing protein"
                     /protein_id="HEX7437462.1"
                     /translation="MLSRTADHLFWMARYMERAENTARMLDVNYQMSLLPQSVEAAEK
                     GWRGLLSISELSGDYSKRHGAVTPRGVMDYMVSDAANASSIRSCLMAARENARAVRGT
                     LTTEVWETQNQTWLEFQRLVATDAFQKAPSDSFEWVKFRSHLSRGVTVGTMLQDEAFH
                     FLRIGSFLERADNTARLLDVKFHAVESEFFGPGLGPRVHGQAQTQGNGNVSGSGRDIE
                     YDFYHWSAILRSVSGFEVYRKVYRNVIRPEKVAELLILRDDMPRSLAACMHEVVSNLR
                     RVANEQSGDTLRIAGRLRADLQYGRIDEILATGLHAYLTQFLERVGALGIGISRDFLV
                     PVAA"
     gene            complement(1537..>2132)
                     /locus_tag="VF308_12200"
     CDS             complement(1537..>2132)
                     /locus_tag="VF308_12200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HEX7437463.1"
                     /translation="DDDFLDPLAFRADSTLGCAGLLEVYRAGNVTLANAIGTGVADDK
                     SIYPFVPKMIEFYLGEKPILNNVPTWQCRKADDLAYVLENLAKLVVKEVHGAGGYGML
                     VGPASTRQEIEDFRAAVSADPQRYIAQPTLSLSTCPTFVESGIAPRHIDLRPFVLSGK
                     TVQMVPGGLTRVALKEGSLVVNSSQGGGTKDTWVLEA"
BASE COUNT          356 a          676 c          739 g          361 t
ORIGIN      
        1 ttgcctcgga atgctgtcga ggtaggcctg aaagcgcggc gtcgattcgg tcttgtgcag
       61 atagggggcg agttcgaccg ccagctcggg gtcgtaggcg aacggaaact tctcggccga
      121 aggctcgagg aaaaaatcga acgggttcag caccgccatc tcggcgacga gatcgacctc
      181 gatgcgcagc gagctcgtct tgtccggaaa gaccaggcgg gcgaggtagt tcgactgcgg
      241 gtcctgctgc cagttgatga agtgcttggt gggctcgacc cgcatcgagt agctcaggat
      301 gcgggtgcgc gagtgcggcg ccgggcgcag gcgcacgacc tgcggaccga gctggatcgg
      361 ccggtcgtac cgatagtggg tcacgtggtt cagcgcgacg tggatggaca ttcagggctc
      421 cggctgggca agcggatcgg tgacgggccg caagcggcaa gaggccattg tcggctcacg
      481 agtgcgcggc cgtgcggcgc gggctcacgc ggcgaccggg accaggaagt cgcggctgat
      541 gccgatcccg agcgcgccga cccgctcgag aaactgcgtc agataggcat gcaggccggt
      601 cgccaggatc tcgtcgatgc ggccgtattg aagatcggcg cgcaggcgcc cggcgatgcg
      661 caaggtgtcg cccgactgct cgttggcgac gcgccgcagg ttcgaaacga cttcgtgcat
      721 gcacgcggcg agcgagcgcg gcatgtcgtc gcgcaggatc agcaattccg ccaccttctc
      781 ggggcggatc acgttgcggt agaccttgcg atagacctcg aaaccggaca ccgagcgcag
      841 gatcgcggac caatgataga agtcgtattc gatgtcccgg ccgctgccgc ttacattgcc
      901 gttgccctgg gtctgggcct ggccatggac ccgcgggccg agccccggcc cgaagaactc
      961 ggactcgacc gcatggaact tcacgtcgag cagccgcgcg gtgttgtcgg cgcgttcgag
     1021 aaagctgccg atgcgcagga agtggaacgc ctcgtcctgc agcatcgtgc cgaccgtgac
     1081 gccgcgcgag aggtgcgagc ggaacttcac ccattcgaat gaatcgctcg gcgccttctg
     1141 gaacgcgtcg gtcgccacca ggcgctggaa ttcgagccag gtctggttct gcgtttccca
     1201 gacttccgtg gtgagcgtgc cgcgcaccgc gcgcgcattc tcccgcgccg ccatcaggca
     1261 gctgcggata ctcgacgcgt tcgccgcatc gctgaccatg tagtccatca cgccgcgcgg
     1321 cgtgaccgcg ccatggcgct tcgaatagtc gccgctcagc tcgctgatgc tgagcaggcc
     1381 gcgccagccc ttttcggccg cctcgaccga ctgcggcagc agcgacatct ggtagttgac
     1441 gtcgagcatg cgcgcggtgt tctcggcccg ctccatgtag cgcgccatcc agaaaaggtg
     1501 atccgccgtt ctagagagca tggtcggttc ctctcatcac gcctccagca cccaggtgtc
     1561 cttcgtgcca ccgccctgcg acgagttgac gacgagcgaa ccctccttca aggcgacccg
     1621 ggtcaggccg cccgggacca tctgcacggt ctttcccgac agcacgaacg ggcgcagatc
     1681 gatatggcgc ggcgcgatgc cgctttcgac gaacgtcggg caggtggaca ggctcagggt
     1741 cggctgggcg atgtagcgct gcgggtcggc gctgacggcg gcgcggaagt cctcgatctc
     1801 ctggcgcgtc gacgccggcc cgaccagcat gccgtagccg cccgcgccgt ggacctcctt
     1861 gacgaccaac ttggcgaggt tctcgaggac ataggcgagg tcgtcggcct tgcggcactg
     1921 ccaggtcggc acgttgttca ggatcggctt ttcgccgagg tagaactcga tcatcttcgg
     1981 cacgaacgga tagatcgact tgtcgtcggc gacgcctgtt ccgatcgcgt tggcgagggt
     2041 cacgttgcca gcccggtaga cctccagcag gccggcgcag ccgagcgtcg agtcggcgcg
     2101 gaaggcgagc gggtcgagga agtcgtcgtc ga
//
LOCUS       DASVHM010000659         2404 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1057253, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000659 DASVHM010000000
VERSION     DASVHM010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2404
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1057253"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1073
                     /locus_tag="VF308_12205"
     CDS             <1..1073
                     /locus_tag="VF308_12205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019426055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437464.1"
                     /translation="PKGVVYSHRSTVLHTLVGCLGDYWGLKGTDCLLPVTPMFHANCW
                     GIPYAAVMMGVKTVFPGPHLHPDDLLDLMQIEPPTLSLGVPTIWMGLIQAFDAAQSTQ
                     PGRWKMPVGLRSLVGGAAVPEALIRAFARHGIWLIQGWGMTETSPLATVSYLRNELKD
                     AGDEERFRRAAMAGNPVPLVDVRIRTDAGSDAPRDGKTPGEVQVRGPFITGSYHEVPV
                     SDDKFTADGWLRTGDVATMDEFAFLRITDRTKDLIKSGGEWISSVDLENALMAHPAVA
                     EAAVIAIPDEKWSERPLACVAFKPGQAIVADRIAAEFGPHLTRHGFARWQLPDRYEVI
                     DAVPRTSTGKFWKLKLRERFPR"
     gene            1141..>2404
                     /locus_tag="VF308_12210"
     CDS             1141..>2404
                     /locus_tag="VF308_12210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEX7437465.1"
                     /translation="MQEQLSLVSSDDNGDAVAIASYAERAYLEYALSVVKGRALPDVC
                     DGQKPVQRRILYAMARMGLAFTTAAGPKAVKSARVVGDVLGRFHPHGDQAAYDALVRM
                     AQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLAPITRLLLDEIDEGTVDFIPNYD
                     GSTEEPRLLPARLPFVLLNGASGIAVGLATEVPSHNLREVAAAAVALIRDDKLSDDAL
                     LALLPGPDYAGGGQIISGAEDIRAAYATGRGSLKVRARWKIEDLARGQWQLVVTELPP
                     GTSTQKVLEEIDELTNPKLRLGKKTISAEQAQLKATVLGVLDAVRDESSKDAPVRLVF
                     EPKTSRIEQAEFSAVLLAHTSLESSAPINLTMVGSDGRPTQKSLRRILAEWVAFRMLT
                     VQRRTTHRLARVRERIHVLEGRQTVLLNI"
BASE COUNT          393 a          850 c          816 g          345 t
ORIGIN      
        1 gcccgaaagg cgtcgtctat tcgcaccgtt cgaccgtgct gcacacgctg gtcggttgcc
       61 tcggggacta ctgggggctc aaaggcaccg actgcctgct gccggtgacg ccgatgttcc
      121 acgccaattg ctggggcatc ccgtacgccg cggtgatgat gggcgtgaag acggtcttcc
      181 ccggcccgca cctgcatccc gacgacctgc tcgacttgat gcagatcgaa ccgcccacgc
      241 tgtcgctcgg cgtgccgacg atctggatgg gcctgatcca ggccttcgat gccgcgcaga
      301 gcacgcagcc cgggcgctgg aagatgccgg tcggcctgcg ctcgctggtc ggcggcgcgg
      361 cggtgccgga agccctgatc cgcgcgtttg cccggcacgg catctggctg atccagggct
      421 gggggatgac cgagacctcg ccgctcgcga cggtctccta tctgcgcaat gaactgaagg
      481 atgccggcga cgaggagcgt tttcgccgcg ccgcgatggc cggcaacccg gtgccgctgg
      541 tcgacgtgcg catccgcacc gacgccggca gcgatgcgcc gcgggacggc aagacgccgg
      601 gcgaagtcca ggtgcgcggg ccgttcatca ccggcagcta tcacgaggtg ccggtcagcg
      661 acgacaagtt caccgccgac ggctggctgc gcaccggcga cgtcgcgacg atggacgagt
      721 tcgcgttcct gcgcatcacc gaccgcacca aggacctgat caagtcgggc ggcgaatgga
      781 tcagctcggt cgatctcgag aacgcgctga tggcccatcc ggcggtcgcc gaggcggccg
      841 tcatcgcgat ccccgacgag aaatggagcg agaggccgct cgcctgcgtc gccttcaagc
      901 cgggccaggc catcgtcgcc gaccgcatcg ccgccgaatt cggcccgcac ctcacgcgcc
      961 acggcttcgc ccgctggcag ttgccggacc gctacgaggt gatcgacgcg gtgccgcgca
     1021 cctcgaccgg aaaattctgg aagctcaagc tgcgcgagcg cttcccgcgc tgagcgcgtt
     1081 ctccaaccca gggcggcgcg gcggcctttc gacggcctgg cgcgccccgc cggatttccc
     1141 atgcaagaac agctttccct ggtgagttcc gacgacaacg gcgacgcggt cgcgatcgcc
     1201 agctatgccg aacgcgccta cctcgaatac gccctcagcg tcgtgaaggg ccgggcgctg
     1261 cccgatgtat gcgacggcca aaagccggtg cagcgccgca tcctctacgc catggcgcgc
     1321 atgggcctgg ccttcacgac ggcggccggt ccgaaggcgg tgaagagcgc acgcgtcgtc
     1381 ggcgatgtgc tcgggcgctt ccacccgcac ggcgaccagg ccgcgtacga cgcgctggtg
     1441 cgcatggcgc aggatttctc gcagcgctat ccgctgatcg acggccaggg caacttcggc
     1501 tcgcgcgacg gcgacggcgc cgcggcgatg cgctacaccg aggcgcgcct cgcgccgatc
     1561 acccggttgc tgctcgacga gatcgacgaa ggcaccgtcg atttcatccc gaactacgac
     1621 ggctcgaccg aggaacccag gctcctgccg gcgcgcctgc ccttcgtgct gctcaacggc
     1681 gccagcggca tcgccgtggg cctggccacc gaggtgccga gccacaacct gcgcgaggtc
     1741 gccgccgcgg cggtggcgtt gatccgcgac gacaagctct ccgatgacgc actgctcgcg
     1801 ctgctgccgg gtccggacta cgccggcggc ggccagatca tcagcggcgc agaggacatc
     1861 cgcgccgctt acgcgaccgg tcgcggcagc ctgaaggtgc gcgcgcgctg gaagatcgag
     1921 gatctggcgc gcggccagtg gcagctcgtc gtcaccgagc tcccgcccgg caccagcacg
     1981 cagaaggtcc tcgaagagat cgacgagctg accaacccga agctgaggct cggcaagaag
     2041 acgatcagcg ccgagcaggc gcagctcaag gcgaccgtgc tcggcgtgct cgacgcggtg
     2101 cgcgacgaat cgagcaagga tgcaccggtg cggctcgtct tcgagccgaa gacgagccgg
     2161 atcgagcagg ccgaattcag tgccgtcctg ctcgcccaca ccagcctcga gagctcggcg
     2221 ccgatcaacc tgaccatggt tggcagcgac gggcgaccga cgcagaagag cctgcgtcgg
     2281 atcctcgccg agtgggtcgc gtttcgcatg ctcacggtgc agcgccgcac aacgcaccgg
     2341 ctggcacggg tgcgcgagcg cattcatgtg ctcgaaggcc gccagaccgt gctcctcaac
     2401 atcg
//
LOCUS       DASVHM010000660         1670 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_478391, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000660 DASVHM010000000
VERSION     DASVHM010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478391"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..1178)
                     /locus_tag="VF308_12215"
     CDS             complement(45..1178)
                     /locus_tag="VF308_12215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEX7437466.1"
                     /translation="MNKTERLLRASLWIAALLASAALWWPAPAQAARIKEVASIQGVR
                     SNQLVGYGLVVGLDGTGDQTTSAPFTIQSLNAMLQQMGVTVPAGTTTQLKNVAAVMVT
                     AQLPAFAQPGQAIDVNVSSLANAKSLRGGTLIATPLKGADGQVYAIAQGNMIVGGAGA
                     SAGGSKVQINHLSAGRIPEGATVERSVPTPLAQGDTLQLDLNTNDFNTAREVVRSINA
                     RMGSGTAQALDGRVVQVRMPASADARVAFMADIENLDVAQATPAAKVVINARTGSVVM
                     NQTVTLASCAVAHGNLSVVINTTPTASQPGPFAKAGQTVVTEKADITITQQAGSLIQM
                     PAGAKLADVVKALNSLGATPQDLLAILQALKAAGALIAELEVI"
     gene            complement(1214..>1670)
                     /locus_tag="VF308_12220"
     CDS             complement(1214..>1670)
                     /locus_tag="VF308_12220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009427 - bacterial-type flagellum basal
                     body, distal rod, L ring [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HEX7437467.1"
                     /translation="VQIVEKVSASQTSTSSIDKSGKVAAAVTALPFLSANSFARASAG
                     GSSSNTFAGKGSTENTNDFSGTITATVTGVLPNGHLLIAGEKQIGVNHNVDVLRFSGQ
                     VDPRAIQSGNTVASAQIANVRIEHRGRGQQADAQGIGWLGRFFLNVLPI"
BASE COUNT          230 a          561 c          592 g          287 t
ORIGIN      
        1 gccgagcggc gtcgcaccca gcgatgccga agcggcagcg gccatcagat cacctcgagc
       61 tcggcgatga gcgcgccggc cgccttcagc gcctgcagga tcgcgagcag atcctgcggc
      121 gtcgcaccca gcgaattcag cgccttgacg acgtcggcga gcttcgcgcc ggccggcatc
      181 tggatcagcg aaccggcctg ctgcgtgatc gtgatgtcgg ccttctcggt gacgacggtc
      241 tggccggcct tggcgaacgg cccgggctgg ctcgccgtcg gcgtcgtgtt gatcaccacc
      301 gacaggttgc cgtgcgcgac cgcgcaggag gcgagcgtca cggtctggtt catcacgacc
      361 gacccggtgc gcgcattgat gaccaccttg gccgccggcg tcgcctgcgc cacgtcgagg
      421 ttctcgatgt cggccatgaa ggcgacgcgc gcgtcggcgc tggcgggcat gcggacctgg
      481 accacgcgac cgtcgagcgc ctgggcggtg ccgctgccca tgcgcgcatt gatcgagcgc
      541 acgacctcgc gcgcggtgtt gaagtcgttc gtgttcaggt cgagctgcag ggtgtcgccc
      601 tgggcgagcg gcgtcggcac gctgcgctcg accgtcgcgc cctcgggaat gcgcccggcg
      661 ctcaggtggt tgatctgcac cttcgatccg cccgccgatg cgccggcgcc gccgacgatc
      721 atgttgcctt gggcaatcgc gtagacctgt ccgtcggcgc ccttgagagg cgtcgcgatc
      781 agggtcccgc cgcgcaggct cttcgcgttg gcgagcgacg agacattgac atcgatcgcc
      841 tggcccggtt gggcgaaggc cggcaactgc gccgtgacca tcactgcggc gacgttcttc
      901 agctgggtcg tggtcccggc cggcacggtg acgcccatct gctgcagcat ggcgttgagg
      961 ctctggatcg tgaaaggcgc cgaggtggtc tggtcaccgg tgccatcgag accgacgacg
     1021 aggccgtagc cgaccagctg gttcgagcgc acgccctgga tcgacgcgac ttccttgatg
     1081 cgcgcggcct gcgccggggc gggccaccac agggcggcgc tcgcgagcag cgccgcgatc
     1141 cagagcgagg cgcgcagcag tcgttcggtt ttgttcatgg gagcatcggt tgatgccccc
     1201 attctgggca gtctcagatc ggcagaacgt tcaaaaagaa ccgcccgagc cagcctattc
     1261 cctgcgcatc ggcctgctgg ccgcggccgc gatgctcgat gcgcacgttg gcgatctgcg
     1321 ccgaggcgac ggtgtttccg gactggatcg cgcgcggatc gacctgcccc gagaagcgca
     1381 gcacgtcgac gttgtggttg acgccgatct gcttctcgcc ggcgatcagc aggtgcccgt
     1441 tcggcagcac gccggtgacg gtcgccgtga tcgtgccgga gaaatcgttg gtgttctcgg
     1501 tgctgccctt gcccgcgaag gtgttgctcg agctgccgcc cgcgctggcg cgcgcgaacg
     1561 aattggccga caggaagggc agcgccgtga cggcggccgc gaccttgccg ctcttgtcga
     1621 tcgagctcgt gctggtctgg ctggccgaga ccttctcgac gatctgcacg
//
LOCUS       DASVHM010000661         5179 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_624424, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000661 DASVHM010000000
VERSION     DASVHM010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5179
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_624424"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..543)
                     /locus_tag="VF308_12225"
     CDS             complement(<1..543)
                     /locus_tag="VF308_12225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437468.1"
                     /translation="MQVFLSQLTLGLVNGSFYAMLSLGLAVIFGLLGIVNFAHGALYM
                     LGAYVAWIGMDKLGINYWAALLVAPIVIGALGVAIERLFLRHLYKIDPIYGLLLTFGL
                     ALIAEGILRYSFGVSGQSYDKPELLAGSTDLGFMVLPNYRAWVVVASLTICLGTWFLI
                     ERTSLGATLRAGTENPALVQA"
     gene            complement(581..1789)
                     /locus_tag="VF308_12230"
     CDS             complement(581..1789)
                     /locus_tag="VF308_12230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013236704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437469.1"
                     /translation="MKLKKLVPACTLALATMFGASAQAQISGDTIKIGFISDLSGLYA
                     DIDGPAGAEAIRMAIADMGGSVAGKKVEVLVADHQNKPDVAGAKAREWFDTQGVDMLI
                     GGTNSGTSLAMAKVAQEKKKLFIAIGAASSALTNEQCSPYTVHYAYDTTALAKGTGNA
                     VVKAGGKSWYFLTADYAFGSQLQNDSAAVVKAAGGTVVGSVRHPLSASDFSSFLLQAQ
                     QSKAQILGLANAGGDTINSIKAANEFGITKTMKLAGLLMFINDVHSLGLKATQGMYLT
                     DSWYWNRDAESRAWSRKFFDKFKRMPSSIQAADYSAALQYLTAVKATGTDDADKVLAQ
                     MKKTKINDMYAKGGWIRDDGSMIHDMYLMQVKSPDKSTEPWDYYNIAETFKGETAWTT
                     KAETKCALWK"
     gene            complement(1830..2534)
                     /locus_tag="VF308_12235"
     CDS             complement(1830..2534)
                     /locus_tag="VF308_12235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007870404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437470.1"
                     /translation="MATRFLEVSNLHGWYGESHVLHGVDFHVDEGEVVTLLGRNGAGR
                     TSTLRAILGLIGSRKGSVKVHGTETTHLATHRIARLGIGYCPEERGIFSSLSAEENLM
                     LPPTLGDSGLSLDQIYAMFPNLKERASSQGTRLSGGEQQMLAVARVLRTGARLLLLDE
                     ISEGLAPVIVQKLGEVVHGLREQGYTIVMVEQNFRFAAPLADRFLVMEHGRVIQQFTQ
                     AELPERMARLHEYLGV"
     gene            complement(2534..3310)
                     /locus_tag="VF308_12240"
     CDS             complement(2534..3310)
                     /locus_tag="VF308_12240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018315272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437471.1"
                     /translation="MSGGELILETHDLTKEFKGFVAVDKVNLRVRRGAIHALIGPNGA
                     GKTTCFNLLTKFLTPTSGRIVFAGTDITHEKPAAIARRGVVRSFQISAVFGHLSVLEN
                     VRVALQRKVGTSFHFWRSESTLGSLDAEALSLLHLVDLEAYASLPAVELSYGRKRALE
                     IATTLAMDPTLMLLDEPTQGMGLEDVDRIRLLIKKVAASRTVLMVEHNMSVVASIADT
                     ITVLARGATLAEGPYAEVSKNPAVIEAYMGTPQAELAGSH"
     gene            complement(3366..4181)
                     /locus_tag="VF308_12245"
     CDS             complement(3366..4181)
                     /locus_tag="VF308_12245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HEX7437472.1"
                     /translation="MSFAAHYALPFPRERAPVATLVPAVARALTLLDRLARGREPMTL
                     ARLSSELALPKSSVHGLCTTLVSFGYLRRQADGSFLIGPGVMGLAEAFVAGTDVAQEF
                     NALWGTSGIAPEETVLLSVLSGNEALYVAVRNSARPLGLAFNVGMRLPAYLSGSGKAM
                     LAQLPADEVRRRFTGQLATRLTHKGPRDVEALLKELALTRKRGYSIDDEAVREGVYSF
                     GAPVFEASGDAVAAVAVCINKAQLGSDRGARHRDAALDVARRLTQRLGGEAVQ"
     gene            4625..>5179
                     /locus_tag="VF308_12250"
     CDS             4625..>5179
                     /locus_tag="VF308_12250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HEX7437473.1"
                     /translation="MRAISSPQRALASRVVAVLAVALAIGLAGCAGLPVPVERQESHA
                     IGDVAGTSLAQTAAASRPGDARDLSGFRLLPEGDDALEARIALIRRAEKSVDVQYYLI
                     ANDRTGRQFLAELAAAAARGVRVRVLVDDLYAIREDALFAALAGQPGFELRLFNPLPV
                     RGGSFASRVAFSAHEFSRINHRMHN"
BASE COUNT          793 a         1731 c         1798 g          857 t
ORIGIN      
        1 ggcctgcacc agcgccgggt tctcggtgcc ggcgcgcagg gtcgcgccga ggctcgtccg
       61 ctcgatcagg aaccaggtgc cgaggcagat cgtcagcgac gcgacgacga cccaggcgcg
      121 gtagttgggc aggaccatga agccgaggtc ggtcgagccg gcgagcagct cgggcttgtc
      181 gtacgactgc cccgagacgc cgaaggaata gcgcaggatc ccttcggcga tgagtgccag
      241 gccgaaggtg aggagcaatc cgtagatcgg gtcgatcttg tacaggtggc gcaggaacag
      301 ccgctcgatc gcgacgccga gcgcgccgat gacgatcggc gcgaccagca gcgcggccca
      361 gtagttgatg ccgagcttgt ccatgccgat ccaggcgacg tacgcgccca gcatgtagag
      421 cgcgccgtgg gcgaagttga cgatgccgag caggccgaag atgaccgcca ggccgaggct
      481 cagcatcgcg tagaacgagc cgttgacgag gccgagcgtg agctgactca ggaagacctg
      541 catcgtcttg gctccgctcg tcgccggctc ttcgcttcgc ttacttccag agggcgcact
      601 tcgtctcggc cttggtcgtc caggccgtct cgcccttgaa ggtctcggcg atgttgtagt
      661 agtcccacgg ctcggtcgac ttgtccggcg acttgacctg catcaggtac atgtcgtgga
      721 tcatgctgcc gtcgtcgcgg atccagccgc ccttggcgta catgtcgttg atcttggtct
      781 tcttcatctg cgccaggacc ttgtcggcgt cgtcggtgcc ggtcgccttg acggctgtca
      841 ggtactgcag cgccgcggag tagtcggcgg cctggatcga cgacggcatg cgcttgaact
      901 tgtcgaagaa cttgcggctc caggcgcgcg actcggcgtc gcggttccag taccagctgt
      961 cggtgaggta catgccctgc gtcgccttca ggccgagcga gtgcacgtcg ttgatgaaca
     1021 tcagcaggcc cgcgagcttc atcgtcttgg tgatgccgaa ttcgttggcg gccttgatcg
     1081 aattgatcgt gtcgccgccg gcgttggcca ggccgaggat ctgcgccttg ctctgctgcg
     1141 cctgcagcag gaacgacgag aaatcgctcg ccgacagggg atggcggacc gagcccacga
     1201 ccgtgccgcc ggccgccttg acgaccgccg cggagtcgtt ctgcagctgc gagccgaagg
     1261 cgtagtcggc ggtcaggaag taccagctct tgccgccggc cttgacgacc gcgttgccgg
     1321 tgcccttggc gagcgcggtc gtgtcgtagg cgtagtgcac ggtgtacggt gagcactgct
     1381 cgttggtgag ggccgagctc gcggcgccga tggcgatgaa gagcttcttc ttctcctgcg
     1441 cgaccttggc catcgccagg ctcgtgcccg agttggtgcc gccgatcagc atgtcgacgc
     1501 cttgcgtgtc gaaccactcg cgcgccttgg cgccggcgac gtcgggtttg ttctggtggt
     1561 cggcgacgag cacctcgacc ttcttgcccg cgaccgagcc gcccatgtcg gcgatcgcca
     1621 tgcggatggc ttcggcgccg gccgggccgt cgatgtcggc gtagaggccg gacagatcgc
     1681 tgatgaagcc gatcttgatc gtgtcgccgg aaatctgcgc ttgcgcagag gcgccgaaca
     1741 tcgtcgccag ggcgagcgtg caggcgggaa cgagcttctt gagtttcatg gtgtctccat
     1801 tgtcggaaag ggaaaggaag cgaaaggcgt cagacgccga ggtattcgtg caggcgcgcc
     1861 atgcgctcgg gcagttcggc ctgcgtgaac tgctggatga cgcggccatg ttccatgacc
     1921 aggaagcggt cggcgagcgg cgctgcgaag cggaaattct gctcgaccat gacgatcgtg
     1981 tagccctgct cgcgcaggcc gtgaacgacc tcgccgagct tctggacgat caccggcgca
     2041 agcccttcgg agatctcgtc gagcagcagc aggcgggcgc ccgtgcgcag gacgcgcgcg
     2101 accgcgagca tctgctgctc gccgcccgac aggcgcgtgc cctggctcga ggcgcgctcc
     2161 ttcagattcg ggaacatcgc gtagatctga tcgaggctga ggccgctgtc gccgagcgtc
     2221 ggcggcagca tcaggttctc ttcggccgac aggctcgaga agatgccgcg ctcttccggg
     2281 cagtagccga tgccgaggcg agcgatgcga tgggtcgcga ggtgggtggt ctcggtgcca
     2341 tggaccttga ccgatccctt gcgcgagccg atcaggccga ggatcgcacg cagggtgctc
     2401 gtccggccgg cgccgttcct gccgagcagc gtgacgacct caccctcgtc gacgtggaag
     2461 tcgacgccgt gcaggacgtg cgactcgccg taccagccgt gcaggttgct cacctcgagg
     2521 aagcgcgtcg ccatcagtgg cttcccgcga gctcggcctg cggcgttccc atgtacgcct
     2581 cgatcaccgc cgggttcttc gagacctctg cgtagggccc ctcggcgagc gtggcgccgc
     2641 gggcgagaac ggtgatcgtg tcggcgatcg aagccacgac gctcatgttg tgctcgacca
     2701 tgagcacggt ccggctggcg gcgaccttct tgatcagcaa gcggatgcgg tcgacgtcct
     2761 cgaggcccat gccctgcgtc ggctcgtcga ggagcatcag cgtcgggtcc atcgccaatg
     2821 tcgtcgcgat ctcgagcgcg cgcttcctgc cgtagctgag ctcgaccgcc ggcagactgg
     2881 cgtacgcctc gaggtcgacc agatgaagca gcgaaagcgc ctcggcgtcg agcgagccca
     2941 gcgtcgactc cgagcgccag aagtgaaacg acgtgccgac ctttctctgc aaggcgacgc
     3001 gaacgttctc gagcaccgac aggtggccga acacggccga gatctggaac gagcggacga
     3061 cgccacggcg ggcgatcgcc gccggcttct cgtgcgtgat gtcggtgccg gcgaagacga
     3121 tccggcctga ggtcggcgtc aggaacttgg tgagcaggtt gaagcaggtc gtcttgccgg
     3181 cgccgttcgg gccgatcagc gcgtggatcg cgccgcgacg aacgcgcagg ttgaccttgt
     3241 cgaccgcgac gaatcccttg aactccttcg tgagatcgtg cgtctccagg atcaattcgc
     3301 cgccgctcat cgacagactt tcgcgctgcg cgctgcggta ctcgcctcgg gaacggcccg
     3361 acggctcatt gcaccgcctc gccgccgagg cgttgcgtca ggcggcgcgc gacgtcgagc
     3421 gcggcgtcgc ggtggcgcgc cccccggtcg ctgccgagct gcgccttgtt gatgcagacg
     3481 gcgaccgccg cgaccgcgtc gccggaagct tcgaacaccg gcgcaccgaa agagtagacg
     3541 ccttcgcgaa ccgcctcgtc gtcgatgctg tagccgcgct tcctggtcag cgcgagttcc
     3601 ttcagcagcg cctcgacgtc gcgcggcccc ttgtgggtga gccgggtcgc gagctggccg
     3661 gtgaagcggc gccggacctc gtcggccggc agctgcgcga gcatcgcctt gccgctgccc
     3721 gagagatagg ccggcaagcg catgccgacg ttgaaggcga ggccaagcgg ccgcgcgctg
     3781 ttgcggacgg cgacgtagag cgcctcgttg cccgacagca ccgagagcag caccgtctcc
     3841 tcgggggcga tgccgctcgt cccccagagg gcgttgaact cctgggcgac gtcggtgccg
     3901 gcgacgaagg cctcggcgag gcccatcacg cccgggccga tcaggaacga gccgtcggcc
     3961 tggcgccgca ggtagccgaa agagaccagt gtcgtgcaca gtccgtggac gctgctcttg
     4021 ggcagcgcca gctcgctcga caagcgcgcc agcgtcatcg gctcgcggcc gcgcgccagc
     4081 cggtcgagca gcgtgagggc acgcgcgacc gccggcacca gcgtcgcgac gggcgcgcgc
     4141 tcgcggggga aagggagggc gtagtgggca gcgaaggaca tgaacgcgcg ggatcgctcg
     4201 gcgggtgaag acgaagggca aaagccaccg ttcatctggc tgaacccgtt tcagcaagca
     4261 ggacgcggag tctaggcaag gagacaccct ccgggacctt ccggggtcgc cgaacccggg
     4321 ttagtcctgt gagcgtttgc cctgagcgcc gcgccgcgcg caccgcggcg gtgtgaacaa
     4381 ggtcactcgg cggaagcggg ttcctcactc gtcgtccggg ggcggcgtcg cgagactggc
     4441 gaccggccag acatgaagcg ttcgcgtctg ccatcccagg agcccatcat gaaatcgatg
     4501 tacgacgatc tcgccaccgc cctcgtcagc gcgacactgt gcctcgccac cgcgtccatg
     4561 ttcgtggtcg tcttcgcgac cctgacctga ccggcgacga cccctggcga catcggcccg
     4621 gaccatgcgc gcgatctcct cgccgcagcg tgccctggca agccgcgtcg tcgccgtgct
     4681 cgcggtggct ctggcgatcg gcctcgccgg ctgcgccggg ttgcccgtcc cggtcgagcg
     4741 gcaggaatcg cacgcgatcg gcgacgtcgc cggcacgtcg ctggcgcaga ccgccgccgc
     4801 gtcgaggccc ggcgacgcgc gcgatctgtc cggctttcgc ctgctgcccg agggcgacga
     4861 cgcgctcgag gcgcgcatcg ccttgatccg gcgcgccgag aaatcggtcg acgtccagta
     4921 ctacctgatc gccaacgacc gcaccggacg ccagttcctg gccgagctgg ccgccgccgc
     4981 ggcgcgcggc gttcgcgtcc gcgttctcgt cgacgacctc tacgccatcc gcgaggacgc
     5041 cctcttcgcc gccctcgccg gccaacccgg cttcgagctg cgcctgttca acccgctgcc
     5101 ggtgcgcggt ggcagcttcg cgtcacgcgt cgccttctcg gcgcacgagt tctcgcgaat
     5161 caaccatcgc atgcacaac
//
LOCUS       DASVHM010000662         1945 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_119184, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000662 DASVHM010000000
VERSION     DASVHM010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119184"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..649
                     /locus_tag="VF308_12255"
     CDS             <1..649
                     /locus_tag="VF308_12255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007875207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HEX7437474.1"
                     /translation="EVAGLIAGAKQAVLFLAFFPGSPSLANWAAAAQKADKNLFVRGC
                     VTNPSAAVDFSYDLTGPQPPKRKPGDPPGRQDPRVIQAQALTGVVPAGWEKEILNAGF
                     AVTHDKIIVIDPFSPGCAVVTGSHNLGHKASFNNDENLVIVKGQRRLAEAYATHVLDI
                     YDHFSWRWNVQTYGQSAADTLLKLDPKAWQERYFDDAGNIKVAQLRFWLSALPHA"
     gene            726..1679
                     /locus_tag="VF308_12260"
     CDS             726..1679
                     /locus_tag="VF308_12260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX7437475.1"
                     /translation="MSSKTFASQADLQEKKVTFTKLSDNAYAYTAEGDPNTGVIVGDD
                     AVLVIDTQATPVMAEDVIRHIRGVTDLPIKYVLMSHYHAVRVLGASAYRPQEIIASQD
                     TYDLIVERGAQDMKSEIERFPRLFRAVETIPGLTWPTLTFKGEMTLWLGKLEVRLMQL
                     GRGHTKGDTVAWLPAQKILFSGDLVEFDATPYAGDAYFKDWPRTLDNIAALEPVALVP
                     GRGAALTTPDMVRRGLAGTRSFVSDLYASVQAGAAQGKDLRAIYKETHATLKPKYGQW
                     VIYDHCMPFDVTRALDEATAHPDPRIWTAERDKAMWESLES"
     gene            1697..>1945
                     /locus_tag="VF308_12265"
     CDS             1697..>1945
                     /locus_tag="VF308_12265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008904465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7437476.1"
                     /translation="MPPIAAGPDYQALEFEYRAVPDQKAAAPAFHDVVVVGGGPVGLA
                     LAIDLAQRGTAVLLLDDDDRLSNGSRAICFSKRTLEIVD"
BASE COUNT          340 a          691 c          624 g          290 t
ORIGIN      
        1 cgaggtggcc gggctgatcg caggggccaa gcaggcggtg ctgtttctcg ccttctttcc
       61 gggcagcccg agcctcgcca actgggccgc cgcggcgcag aaggccgaca agaacctgtt
      121 cgtccgcggt tgcgtcacga atccctcggc ggcggtcgac ttctcctacg acctcaccgg
      181 gccgcagccg cccaagcgca agcccggcga cccgcccggc cggcaggatc cgcgcgtgat
      241 ccaggcccag gccctcacgg gtgtcgtccc ggccggctgg gagaaggaga tcctgaatgc
      301 cggcttcgcg gtcacgcacg acaagatcat cgtcatcgac ccgttctcgc ccggctgcgc
      361 cgtcgtcacc ggcagccaca acctcggcca caaggcctcg ttcaacaacg acgagaacct
      421 cgtcatcgtg aagggccagc gccgcctggc cgaggcctac gcgacccacg tgctcgacat
      481 ctacgaccac ttttcgtggc gctggaacgt gcagacctac ggccagagcg cggccgacac
      541 gctgctcaag ctcgacccga aggcctggca ggaacgctat ttcgacgatg ccggcaacat
      601 caaggtcgcg cagttgcggt tctggctgtc ggcgctgccg cacgcatagc cctgccggcc
      661 cggcacctaa aattggcgca tcgaccgcgc attttcgcgc ggtcaccgtt gcgcccggag
      721 ttcccatgag cagcaaaacc ttcgcatccc aagccgacct tcaggaaaag aaggtcacct
      781 tcacgaagct ctcggacaac gcctatgcct acaccgccga gggcgacccg aacaccggcg
      841 tcatcgtcgg cgacgacgcg gtgctggtga tcgacacgca ggccacgccg gtgatggccg
      901 aagacgtgat ccggcacatc cgcggcgtca ctgacctgcc gattaagtac gtgctgatga
      961 gccactacca cgctgtgcgc gtcctcggcg cgagcgccta ccggccgcag gaaatcatcg
     1021 ccagccagga cacctacgac ctgatcgtcg agcgcggcgc gcaggacatg aagagcgaga
     1081 tcgagcgctt cccgcgcctc tttcgcgcgg tcgagaccat tcccggtctg acctggccga
     1141 cgctcacctt caagggcgag atgacgctct ggctcggcaa gctcgaagtc cggctgatgc
     1201 agctcggccg cggccacacc aagggcgaca cggtcgcctg gctgccggcc cagaagatcc
     1261 tcttcagcgg cgacttggtc gagttcgatg cgacgcccta tgccggcgac gcctacttca
     1321 aggactggcc gcgcacgctc gacaacatcg cggcgctcga gccggtcgca ttggtgccgg
     1381 ggcgcggcgc ggccttgacg acgcccgaca tggtgcggcg cggactggcc ggcacgcgct
     1441 cgttcgtgag cgatctctat gcgagcgtcc aggccggtgc ggcgcagggc aaagacctgc
     1501 gcgcgatcta caaagagacg cacgcgacgc tcaaacccaa gtacggacag tgggtgatct
     1561 acgaccactg catgccgttt gacgtgaccc gtgcgctcga cgaggcgacc gcgcacccgg
     1621 atccgcgcat ctggaccgcc gagcgcgaca aggcgatgtg ggaatcgctc gagagctgat
     1681 ccgggcactg cgcaccatgc cgccgatcgc cgccggcccc gactaccagg cgctggagtt
     1741 cgagtaccgg gccgtgccgg accaaaaggc cgcggcgccg gcgttccatg acgtcgtcgt
     1801 cgtcgggggc gggccggtcg gcctcgcgct cgcgatcgat ctcgcgcagc gcggcacggc
     1861 ggtgctcctg ctcgacgacg acgatcgcct ttcgaacggc tcgcgggcga tctgcttctc
     1921 gaagcggacg ctcgagatcg tcgac
//
LOCUS       DASVHM010000663         1901 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_769587, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000663 DASVHM010000000
VERSION     DASVHM010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_769587"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..761)
                     /locus_tag="VF308_12270"
     CDS             complement(60..761)
                     /locus_tag="VF308_12270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437477.1"
                     /translation="MTAVLQTAGLTAFYGDAQALFGIDFELCAGEIVAIIGANGAGKS
                     TFMKSVSGLVRAAPEQIRFEGAAIGGMPPAEIVRRGIALVPEGRRLFPSLSVEENLQM
                     GRAAKRRGPWNLERLYKLFPILEERRAQPSTSLSGGQQQMVAIGRALMSNPSVLLCDE
                     LSLGLAPIVIKEIYDALPTICAEGMTVTIVEQDVSMARRVSQRVYCFQEGRVSLHGPS
                     GELTREQISQAYFGV"
     gene            complement(758..1477)
                     /locus_tag="VF308_12275"
     CDS             complement(758..1477)
                     /locus_tag="VF308_12275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437478.1"
                     /translation="MSLLALHSVSKSYGALKVTDDISLAVTEGETLGILGPNGAGKTT
                     LFNLISGDARCDRGSVHYEGRDITTLKPHQRCRLGLGRSYQVPQPFGNMTVFENLVTA
                     ACFGGRQPEHEAWETAHGVLRQTGLMAHANKPAGGLTLLDRKRLELARALATRPKLLL
                     LDEIAGGLTEHEAAQLVDELKRIKAAGVTMIWIEHVVHALLAIADRLFVINFGCKLAE
                     GEPLAVMADAQVQRVYMGMEA"
     gene            complement(1509..>1901)
                     /locus_tag="VF308_12280"
     CDS             complement(1509..>1901)
                     /locus_tag="VF308_12280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437479.1"
                     /translation="EVWWSPSHPFTSSLTKQSAKALAEAYEAGTKKQWTQPIGFAHAL
                     FEVAADTLKRSKSLAAKDVRDAVAATDMNTVVGPVKWGGQGPFKNVSKTPLVLGQWGK
                     GKKYKMELTIVNDETAKNIPTGGTIRLM"
BASE COUNT          286 a          639 c          639 g          337 t
ORIGIN      
        1 cgcgaacagg ccgtagaggc cgccgagcag gagaccctgg agcaggactt ccagcacgtt
       61 cagactccga agtaggcctg cgagatctgc tcgcgggtga gttcgcccga cggcccgtgc
      121 agcgagacgc ggccttcctg aaaacagtag acgcgttgcg agacgcgccg cgccattgac
      181 acgtcctgct cgacgatcgt gacggtcatg ccttcggcgc agatcgtcgg cagcgcgtcg
      241 tagatctcct tgatgacgat cggcgcgagg ccgaggctca gctcatcgca gagcagcacg
      301 ctcgggttgc tcattagcgc gcgcccgatg gcgaccatct gctgctggcc gcccgaaagc
      361 gaggtggacg gctgggcgcg cctctcctcg aggatcggaa agagcttata gagccgttcg
      421 aggttccatg gcccgcgccg cttcgccgcc cgtcccatct gcaggttctc ttcgaccgag
      481 aggctcggga acaggcgccg gccttcgggc accagcgcga tgccacgacg gacgatctcg
      541 gccggcggca tcccgccgat cgccgcgcct tcgaagcgga tctgctcggg tgcggcccgg
      601 acgagcccgc tgaccgattt catgaacgtg ctcttgcccg cgccgttggc gccgatgatc
      661 gcgacgatct ccccggcgca gagttcgaaa tcgatgccga agagcgcctg cgcgtcgcca
      721 tagaaggcgg tcagcccggc ggtctggagc acggccgtca tgcctccatc cccatgtaca
      781 cgcgctgcac ttgcgcatcg gccatcaccg cgagcggctc gccctcggcg agcttgcagc
      841 cgaagttgat gacgaagagg cggtcggcga tcgcgagcag cgcatgcacg acgtgctcga
      901 tccagatcat cgtcacgccg gccgccttga tgcgcttcaa ctcgtcgacg agctgcgccg
      961 cctcatgctc ggtcaggccg cccgcgatct cgtcgagcag cagcagcttc ggacgggtcg
     1021 cgagcgcgcg ggcgagttcg aggcgcttgc ggtcgagcag cgtcaggccg ccggccggct
     1081 tgttggcgtg cgccatcagg ccggtctggc gcagcacgcc gtgcgcggtt tcccaggctt
     1141 cgtgttcagg ctgccggcct ccgaaacatg ccgcggtgac gaggttctcg aacaccgtca
     1201 tgttgccgaa aggttgcggc acctggtagc tccggccgag cccgaggcga cagcgctggt
     1261 gcggtttcag ggtggtgatg tcgcgccctt cgtagtgcac gctgccgcgg tcgcagcggg
     1321 cgtcgcccga gatcaggttg aaaagcgtcg tctttccggc gccattcggc ccgaggatgc
     1381 cgagcgtctc gccctcggtc accgccaacg agatgtcgtc ggtgaccttg agcgcgccat
     1441 aggacttgct gaccgaatgc agcgcaagca gcgacatcga cgtcccgtcc tcaggctggt
     1501 gcgcggcgtc acatcagccg gatcgtgccg ccggtcggaa tgttcttcgc ggtctcgtcg
     1561 ttgacgatgg tcagctccat cttgtatttc ttgcccttgc cccactggcc gagcacgagc
     1621 ggggtcttgc tgacgttctt gaaggggccc tggccgcccc acttgaccgg gccgacgacg
     1681 gtgttcatgt ccgtcgcggc gaccgcatcg cgcacgtcct tcgccgcgag gctcttgctg
     1741 cgcttgagcg tgtcggcggc gacctcgaag agggcgtggg cgaagccgat cggctgggtc
     1801 cactgcttct tcgtgccggc ctcgtaggcc tcggcgagcg ccttggcgct ctgcttcgtc
     1861 aaggacgacg tgaacggatg cgacgggctc caccagactt c
//
LOCUS       DASVHM010000664         1603 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_914275, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000664 DASVHM010000000
VERSION     DASVHM010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_914275"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..547
                     /locus_tag="VF308_12285"
     CDS             <1..547
                     /locus_tag="VF308_12285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437480.1"
                     /translation="APAPRPAPTPAPTPVATKKSPWFWIALAGVIVVLAGIVSLLGEM
                     QQPAAPIAAPIGTVSPGGAATYPTGPGINMNVAWYDNALMYQGTLSWDGRSNAAALSV
                     DVVDGQTKRSIGHRQVAAYGHADAPGRNVFSTQIAVPGDSMTAGAHVHNVNLVFELQP
                     NGNWALVRNCMGPGNCYEINR"
     gene            complement(565..1488)
                     /locus_tag="VF308_12290"
     CDS             complement(565..1488)
                     /locus_tag="VF308_12290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEX7437481.1"
                     /translation="MPRVIWKGAISFGLVHVPVALYPASQESDIDFDWLDRRTMDPVG
                     YKRINKRTGKEIERDDIVKGIKQADGDYVVLSEDEIEEAYPVSTQTIEIETFVPANEI
                     PFTYLEKPYFLAPLAKGEKVYALLRDAMKAAKVVGIARVVMHTKERLAALIPDGDALL
                     LNTIRWADELRPRDEIAIPGAGKGAAKPKEGELKMAVQLVRDMTGTWQPADYADKFTS
                     AIHALAAQRVKAGRTEKVTPLEDAGAASAASNVVDLTELLKKSLATRKQGGDARAHAA
                     PAAAPAKSAAKKGTPARSAKSAGSTKAKRAA"
BASE COUNT          216 a          571 c          537 g          279 t
ORIGIN      
        1 cgcgcccgcg ccccgtccgg cgccgacgcc cgcgcccacg ccggtcgcga ccaagaaatc
       61 gccgtggttc tggatcgcac tggccggtgt catcgtcgtg ctcgcaggca tcgtttcact
      121 gctcggcgaa atgcagcagc ctgcggcgcc catcgccgcg ccgatcggca ccgtttcgcc
      181 cggcggcgcc gccacctacc ctaccgggcc gggcatcaac atgaacgtcg cctggtacga
      241 caacgcgctg atgtaccagg gcacgctctc gtgggacggc cgctcgaacg ccgccgcgct
      301 gtcggtcgac gtcgtcgacg gacagacgaa acgcagcatc ggccatcgcc aggtggcggc
      361 gtacgggcac gccgatgcgc cgggccgcaa cgtcttctcg acccagatcg cggtgcccgg
      421 cgacagcatg acggccggtg ctcacgtcca caacgtgaac ctggtcttcg agctgcagcc
      481 gaacggcaac tgggcgctcg ttcgcaactg catggggccg ggcaactgct acgagatcaa
      541 tcgctgacgg cacggcccgc cgactcaggc ggcgcgcttc gccttcgtcg atccggcgct
      601 cttcgccgat ctcgccggcg tgcctttctt cgccgcgctc ttggccggcg ccgcagccgg
      661 tgccgcgtga gccctggcat cgccgccctg ctttcgcgtc gccaggctct tcttcagcag
      721 ctccgtgagg tcgacgacat tgctcgccgc cgacgccgcg ccggcgtcct cgagcggcgt
      781 caccttctcg gtcctgccgg ccttgacgcg ctgcgccgcg agggcgtgga tcgccgaggt
      841 gaacttgtcg gcgtagtcgg ccggctgcca cgtgccggtc atgtcgcgga cgagctggac
      901 cgccatcttc agctcgccct ccttgggctt ggccgcgccc ttgcctgcgc cgggaatggc
      961 gatctcgtcg cgcggccgga gctcgtcggc ccagcggatc gtgttgagca gcaaggcatc
     1021 gccgtccggg atcagcgccg cgagccgctc cttggtgtgc atgacgacgc gggcgatgcc
     1081 gaccaccttg gccgccttca tcgcgtcgcg cagcagcgcg tagaccttct cgcccttggc
     1141 gagcggtgcc aggaagtagg gcttctcgag gtaggtgaag ggaatctcgt tggctgggac
     1201 gaaggtctcg atctcgatcg tctgcgtcga caccgggtac gcctcctcga tctcgtcttc
     1261 gctcaggacg acgtagtcgc cgtcggcctg cttgatgccc ttgacgatgt cgtcgcgctc
     1321 gatctccttg ccggtgcgct tgttgatccg cttgtagccg accggatcca tggtccgccg
     1381 gtcgagccag tcgaaatcga tgtcgctctc ctgcgatgcc ggatagagcg cgaccggtac
     1441 gtggacgagg ccgaaactga tggcaccttt ccagatgacg cggggcatgg cggactccag
     1501 gggagggagc cgccatcgtg cccgggccgg ccggcgcgtc aaggccgcgc cggctgaagg
     1561 cgctgtgggc gccggcctac aggcggcatt cgcgtaacct tcg
//
LOCUS       DASVHM010000665         4123 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_625015, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000665 DASVHM010000000
VERSION     DASVHM010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4123
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_625015"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..873
                     /locus_tag="VF308_12295"
     CDS             <1..873
                     /locus_tag="VF308_12295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7437482.1"
                     /translation="ARARANGIELCYDTFGDANSPALLLIMGLASQMIAWPDEFCALL
                     AARGYRVIRFDNRDIGLSTSFDSAGVPNIGAAMAAALQGKPVDAPYRLSDMGADAFGL
                     LDALGIESAHVVGASMGGAIAQTMAIERPGRLRTLTSIMATTGAPGLPPPTPEAMAVL
                     LKPPATTLEDYVTSYAQTWKVLRAGSFPEDEALDHERAERLHARGLNPPGVARQLAAI
                     LASGSRKTALGAVRVPTLVIHGDADPLVPLACGVDTAQSVAGARLVVVEGMGHALPIS
                     HWGRIIDAIAAHAV"
     gene            898..1701
                     /locus_tag="VF308_12300"
     CDS             898..1701
                     /locus_tag="VF308_12300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX7437483.1"
                     /translation="MRATDPSAPPSRELLFLELRAIWELSAFFASYPLLRMAPRGDGH
                     AVLVLPGLAANDTSTRPLRRFLNDQGWDANGWELGHNHGPRPGAEEKMQNRLATLFRD
                     SGRKVSLVGWSLGGVFAREMARREPDHVRCVITLGSPFAGAPRASNAWQLYERASNRK
                     AEDWPGRERMKTPPPVPATAIFSRTDGIVAWQGCLEREGPTSENIEVEGSHCGLGHNP
                     TVLYAIADRLAQPAGHWKPFDRSGLRSLIYPDPGRGEAIPGLAGWATGG"
     gene            1742..3382
                     /locus_tag="VF308_12305"
     CDS             1742..3382
                     /locus_tag="VF308_12305"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR02946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="wax ester/triacylglycerol synthase family
                     O-acyltransferase"
                     /protein_id="HEX7437484.1"
                     /translation="MKPLGGIDASFLYMETPQTPMHVAGLSIVELPRGFKGNFYEIYK
                     RHVAARLHLFPVLKKKVVPVPWDIDHPIWVDDDELDIDYHVRHLGLPEPGTIEQLEEL
                     VGRLHSNFLDRSRPLWEFYVIDGLADGHHAIYTKIHHAAVDGGAGMALTNMMYDTSPA
                     GRQIEPAPAHGEHPEGQPEPLALLGSAYRNMLSQQVSALQRIPDVLKAIASVVAPVVG
                     KIVRLPAKGLPNLVAPRTMLNATITSQRAFTARSLSLAQAKAVAKETGTKLNDIVMAI
                     CAGALRRYLLEKHGLPKEPLVAFVPVSLRPPGNTESTNQVSGMLCSLATDIKDPAERL
                     KAIQASTLEAKELSGKVKDATPRDFSIFGAPFVLHEAMELYGRSHLADRLPPPANVVV
                     ANVPGPQAPLYVAGARVLTLYPVSIPSHGMALNLTVQSYCGSLDFGLTACRKTVPELR
                     KLADYLDESLAELHEAVFGSAAGEAAGSRKSSTSRSRSASAPASARGRAAPKSGARQA
                     PPARAPKATQPAARKPARSTPASTKRSPSAKAGKAARA"
     gene            3434..3949
                     /locus_tag="VF308_12310"
     CDS             3434..3949
                     /locus_tag="VF308_12310"
                     /inference="COORDINATES: protein motif:HMM:NF020918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HEX7437485.1"
                     /translation="MATTVRKTARKTATKTTRKATAKTTGKTAGASASAKRSLGLPSL
                     GDLGKLVSRLKLPGVDVAAIVDSQRKDMEALAEANRQAYEGIKALAQRRNEILRAALV
                     EWQEAMKDVTGKDALSKNADRARQGVKKAIDSVRELAEMEAETRRKAWKVVQDRFQEN
                     LANLQNLLKPK"
BASE COUNT          708 a         1444 c         1424 g          547 t
ORIGIN      
        1 gcgcgcgcca gagcgaacgg catcgagctc tgctacgaca cgttcggcga cgcgaactcg
       61 ccggcgctcc tgctgatcat gggtctggcg tcgcagatga tcgcctggcc cgacgagttc
      121 tgcgcattgc tcgcggcgcg cggataccgc gtgatccgct tcgacaaccg cgacatcggc
      181 ctgtcgacga gcttcgactc ggccggggta ccgaacatcg gtgccgcgat ggccgcggcg
      241 ctgcagggca agccggtcga cgccccatac cgcctgagcg acatgggcgc tgacgcgttc
      301 ggtctgctcg acgcgctcgg catcgagagt gcccacgtcg tcggtgcatc aatgggcggc
      361 gcaatcgcgc agaccatggc gatcgagcgc cctgggcgct tgcgcacgct gacgtcgatc
      421 atggcgacga ccggcgcgcc gggcttgccg ccgccgacgc cggaggcgat ggccgtcctg
      481 ctcaagccgc cggcgacgac gctcgaggac tacgtcacaa gctacgcgca gacctggaag
      541 gtgctgcgtg cggggagctt cccggaagac gaggcgctcg accacgagcg cgccgagcgg
      601 ctccacgcgc gcgggctcaa cccgcccggc gtcgcacgcc agctcgcggc gatccttgcg
      661 tcgggcagtc gcaagacagc gctcggcgcg gtgcgggtgc cgacgctcgt catccacggc
      721 gacgccgatc cgctggtccc gctcgcctgc ggcgtcgaca cggcgcagag cgtcgccgga
      781 gctcgcctcg tcgtcgtcga ggggatgggc cacgcgctgc cgatctccca ctgggggcgc
      841 atcatcgacg ccatcgccgc gcatgcggtc tgattgccat cgcctggaga cgccttgatg
      901 cgagccaccg accccagtgc accgccgtcg cgcgagctgc tgttcctcga gttgcgcgcg
      961 atctgggagc tgagcgcgtt cttcgcgtcc tatccgctgc tgcgcatggc gccgcgcggc
     1021 gacggccacg cggtgctcgt gctgccgggt ctggcggcga acgacacgtc gacccggccg
     1081 ctgcgacggt tcctcaacga ccaggggtgg gacgcgaacg gctgggagct cggccacaac
     1141 cacggcccgc gtcccggcgc cgaggagaag atgcagaacc ggctcgcgac cttgttccgg
     1201 gactcgggcc gcaaggtcag tctcgtcggc tggagcctgg gcggcgtctt cgcgcgcgag
     1261 atggcgcgcc gcgagcccga ccacgtgcgc tgcgtgatca cgctcggtag cccgttcgcc
     1321 ggcgcgccgc gcgcgagcaa cgcgtggcag ctgtacgaac gcgccagcaa ccgcaaggcc
     1381 gaggactggc ccgggcgcga gcggatgaag acgccgcccc cggtgccggc gacggcgatc
     1441 ttcagccgca ccgatggcat cgtcgcgtgg cagggttgcc tcgagcgcga aggtccgacg
     1501 tcggagaaca tcgaggtcga gggcagccac tgcgggctcg ggcacaaccc gacggtgctg
     1561 tatgcgatcg ccgatcggct ggcgcaaccc gcggggcact ggaagccgtt cgaccgcagc
     1621 gggctcagga gcctgatcta ccccgatccg ggtcgcggcg aggcgatccc gggactggcc
     1681 ggctgggcaa ccggcggatg accgccctgc gaacgaagtc aaccggcaac gcgaggcgac
     1741 gatgaaacca ctcggcggaa ttgacgcgag ctttctctac atggaaacgc cgcagacgcc
     1801 gatgcacgtc gcgggccttt ccatcgtcga gttgccacgc ggattcaagg gcaacttcta
     1861 cgagatctac aagcgccacg tcgccgcgcg actgcacctg ttccctgtgc tcaagaagaa
     1921 ggtcgtcccg gtgccctggg acatcgacca tccgatctgg gtcgacgacg acgagctcga
     1981 catcgactac cacgtccgcc acctcggctt gcccgagccc gggacgatcg agcagctcga
     2041 ggagctggtc ggtcgactgc attcgaactt cctcgaccgc agccggccgc tctgggagtt
     2101 ctacgtcatc gacggcctcg ccgacggcca ccacgcgatc tacaccaaga tccaccacgc
     2161 cgcggtcgac ggcggcgccg gcatggcgct caccaacatg atgtacgaca cgagcccggc
     2221 gggccggcag atcgagcctg cgccggcgca cggcgaacac cccgagggcc agcccgaacc
     2281 gctcgcgctg ctcggctcgg cgtacaggaa catgctcagc cagcaggtga gcgcgctgca
     2341 aaggatcccg gacgtgctga aggcgatcgc cagcgtcgtc gcgccggtgg tcggcaagat
     2401 cgtgcgcctg cccgccaagg ggctgccgaa cctcgtcgct cccaggacga tgctcaacgc
     2461 gacgatcacg agccagcgtg ccttcacggc gcgctcgctc tcgctcgccc aggcgaaggc
     2521 ggtcgcgaag gagaccggca ccaagctcaa cgacatcgtc atggcgatct gcgcgggcgc
     2581 gctgcgccgt tatctgctcg agaagcacgg cttgcccaag gagccgctgg tggcgttcgt
     2641 gccggtgtcg ctgcgcccac ccggcaacac cgagtcgacc aatcaggtgt cgggaatgct
     2701 gtgcagcctg gcgaccgaca tcaaggaccc tgcggagcgg ctgaaggcga tccaggcgtc
     2761 gacgctcgaa gccaaggaac tgagcggcaa ggtcaaggac gcgacgccgc gcgacttttc
     2821 gatcttcggc gcaccgttcg tgctgcacga ggcgatggag ctgtacggcc gatcacacct
     2881 cgccgaccgc ttgccgccgc ccgccaacgt cgtcgtcgcg aacgtgccgg gcccgcaggc
     2941 gccgctctac gtcgccggtg cgcgcgtgct cacgctctat ccggtgtcga tcccgagcca
     3001 cgggatggcg ctcaacctca cggtgcagag ctattgcggc tcgctcgact tcggtctgac
     3061 cgcgtgccgc aagaccgttc ctgagctgcg caagctcgcc gactatctcg acgagtcgct
     3121 ggcggagctg cacgaagcgg tgttcggcag cgcggcgggc gaagccgccg gctcgcgcaa
     3181 aagttcgacg tcgcgcagtc gcagcgcatc ggcgccagcg tctgcacgcg ggcgcgcagc
     3241 gcccaagagc ggcgctcgcc aagccccccc tgcgcgtgcg ccgaaggcaa cccagcctgc
     3301 ggcacgcaaa ccggcacgtt ccacgccggc gtcgaccaag cgttcgccat cggccaaggc
     3361 cggcaaggcg gcacgcgcgt agaacgccgc gccgcggcgc ggattcagtc ccaaccacca
     3421 cggaggagaa gacatggcga cgacggttcg aaaaacggcg agaaagaccg ccaccaagac
     3481 cacccgcaag gcgacggcca agacgaccgg caagacggcc ggcgccagcg cgagcgcgaa
     3541 acgatcgttg gggctgccct cgctcggcga cctcggcaag ctcgtgagtc ggctgaagct
     3601 gcccggcgtc gacgtggcgg cgatcgtcga ctcgcaacgc aaggacatgg aagcgctcgc
     3661 cgaagcgaat cggcaggcct acgagggcat caaggcgctg gcgcagcggc gcaacgagat
     3721 cctgcgagcg gcgctggtcg agtggcagga agcgatgaag gacgtgaccg gcaaggacgc
     3781 gttgagcaag aacgcagatc gcgcccggca gggtgtcaag aaggccatcg acagcgtccg
     3841 cgagctggcc gagatggaag ccgagacacg gcgcaaggcc tggaaggtcg tgcaggaccg
     3901 cttccaggag aacctggcga acctgcagaa cctgctcaag ccgaagtgag gttggcgccg
     3961 ccccggcggg cggccccatt tcgaggagcc gaccatggcg aacaaggtcc cgcgttccaa
     4021 ggagaacgac tacacccgcg agatggccgg ggcgcggcgc cgcttcgtgc aggagcgcac
     4081 cggcgccgcg ctcgagcacg tcggcagctt ctcgttcgat ccc
//
LOCUS       DASVHM010000666         5041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1273776, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000666 DASVHM010000000
VERSION     DASVHM010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5041
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1273776"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..580
                     /locus_tag="VF308_12315"
     CDS             <1..580
                     /locus_tag="VF308_12315"
                     /inference="COORDINATES: protein motif:HMM:NF010072.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HEX7437486.1"
                     /translation="GYFILGRSYPWIVSVVVAGVITLLVMHAMLAVRKFPIDYRQYRS
                     FRDHAGDMKHGDTTLWWWQVVTGFAMFFLASIHLHVMLTRPERIGPFESADRVWSEHY
                     WPLYLVLLFAVELHGGIGLYRLAVKWGWFNGAHADANRRRLKALKWSLTAFFLVLGLA
                     TLAAYIKIGVEHAARAGETYTPAWVQPAPAPK"
     gene            591..2576
                     /locus_tag="VF308_12320"
     CDS             591..2576
                     /locus_tag="VF308_12320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008811317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HEX7437487.1"
                     /translation="MKIVYTDVLVVGGGLAGLRVAIGAKRRGHDAVILSLVPPKRSHS
                     AAAQGGMQASLANVIKGQGDNEDVHFEDTVRGSDWGADQRVVRMFVDTAPKAVRELAA
                     WGVPWSRVARGDRQVIINGQKVTLTERDEAHGLVAQRDFGGTKKWRTCYVSDGTGHAM
                     LYAVSDRAIAESVAVHERMEAIALIHEGGRCYGAVVRNLATGELSAYVAKATVIATGG
                     AGRLYRVTTNGVICEGIGGAIALETGIATLGNMEAIQFHPTAIFPAGILVTEGCRGDG
                     GLLKDVDGHRFMPDYEPEKKELASRDVVSRRMETHIRKGKGAQSRFGEHLWLDITQLG
                     RAHIEKNLREVKEICEAFLGIDPVEKMIAVRPAQHYTMGGVRTNHTGQSPTLKGLFAA
                     GEAACWDMHGFNRLGGNSVAETVVAGMIVGDFVADFCDDVGNDVRIPTGLVREFVASE
                     QAKLDRLVSGAAGDEDASAIKAAMQNVMTAKVGIFRTGAELASAVDELQALLERSRRI
                     GLRHKAAGANPELATAYRVQKMLKVALCIAHGASQRTESRGAHFREDFPRRDDAQWLK
                     RTLASWKGEADTLPTLAYEALDVRSMELPPGWRGYGAKDYVDHPDTAARTAEVVALRE
                     RIKDAPRFEVQRALMPYDDLLPRGLRGRNERIDEPLP"
     gene            2573..3364
                     /locus_tag="VF308_12325"
     CDS             2573..3364
                     /locus_tag="VF308_12325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008811318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HEX7437488.1"
                     /translation="MRIPIHPVAPALVQTAPAAADTATRLLKIRILRFDPRQPETLPH
                     WQTYELLDAAGMTLFIALSEIREKLDPSLQFDFVCRAGICGSCAMLINGRPGLACRTL
                     TKNLDLEFTLAPLPVFELIGDLSVDTGKWMRGMSERLQTWVHQQEEAVDLRRLEARME
                     PELAEKIYELDRCIECGCCVAACGTARMREDFVGAVGLNKIARFRLDPRDTRDDDDFY
                     ELIGDDDGVFGCMSLLGCHDVCPKQLPLSTQIAFLRRKMVAMAFK"
     gene            3432..4433
                     /locus_tag="VF308_12330"
     CDS             3432..4433
                     /locus_tag="VF308_12330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011463784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HEX7437489.1"
                     /translation="MVALVAALGGALAISVSAQPQAPIVIKFSHVVATDTPKGLASEF
                     FAKRAAELTKGKAKVEVYANSQLYKDKEEMEALQLGAVQMLAPSLAKFGPLGVKEFEV
                     FDLPFIFDDYKSLHKVTQGPLGKQLLDKLETKGIKGLAYWDNGFKSFSANKAIRTPAD
                     MKGLKLRIQSSKVLDEEIRALGGVPQVMAFSEVYQALQTGVVDGTENPISNLYTQKMH
                     EVQKYLTITEHGYLGYAVIVNKKFWDGLPADVRGPLEQAMKEATDYANKIAKEQNDLD
                     LEAVKKAGRTQVYVPTKEERMAFKKALVPVHKTMESRIGADLIKSIYKETGFDPGKL"
     gene            4499..>5041
                     /locus_tag="VF308_12335"
     CDS             4499..>5041
                     /locus_tag="VF308_12335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008325756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HEX7437490.1"
                     /translation="MKVLDHLEEWLISFLMGGATLIIFFSVLHRYLAATPIPGVQDWM
                     LHLNFSWAQELCIIMFVWMCKFGAAYGVRTGIHVGVDVVVNRLDEKMRGRVVLFGLLA
                     GALFTGAIGALGAHFVWDNGAHYAFVKALGLDVGAQYEGPTTPDLEWPTWAVYSAIPL
                     GSSLMCFRVLQVAWAFWKTGE"
BASE COUNT          855 a         1710 c         1701 g          775 t
ORIGIN      
        1 gggctacttc atcctcgggc ggtcgtaccc ctggatcgtc tcggtggtcg tcgccggcgt
       61 gatcacgctg ctcgtcatgc acgcgatgct cgccgtgcgc aagttcccca tcgactacag
      121 gcagtaccgc tcgttccgcg accatgccgg cgatatgaag cacggcgaca ccacgctctg
      181 gtggtggcag gtggtgactg gcttcgcgat gttcttcctc gcctcgatcc acctgcacgt
      241 gatgctcacg cgcccggaac ggatcgggcc tttcgagagc gcagaccggg tctggagcga
      301 gcactactgg ccgctctacc tcgtcctgct gttcgcggtc gagctgcatg gcggcatcgg
      361 cctgtaccgt ctggcggtga agtggggctg gttcaacggc gctcacgccg acgccaaccg
      421 gcgccgcctg aaggcgctga agtggtcgtt gacggctttc ttcctggtgc tgggcctcgc
      481 gacgctcgcg gcgtacatca agatcggcgt cgagcatgcg gcccgggccg gcgagaccta
      541 cacgccggcg tgggtgcagc cggcgccggc gccgaagtga aagcgccatc gtgaagatcg
      601 tctacacgga cgtgctcgtg gtcggcggcg gcctcgccgg cctgcgcgtg gcgatcggcg
      661 cgaagcggcg cggccatgac gccgtcatcc tgtcgctcgt tccgcccaag cgctcgcatt
      721 cggcggccgc gcagggcggc atgcaggctt cgctggccaa cgtcatcaag ggtcagggcg
      781 acaacgagga cgtgcacttc gaggacacgg tgcgcggcag cgactggggc gccgaccagc
      841 gcgtcgtccg gatgttcgtc gacaccgcgc cgaaggcggt gcgcgagctc gccgcgtggg
      901 gcgtgccgtg gagccgcgtc gcccgcggcg accgccaggt gatcatcaac ggccagaagg
      961 tcacgctcac cgagcgcgac gaggcccacg gcctggtcgc ccagcgcgac ttcggcggca
     1021 ccaagaagtg gcgcacctgc tacgtctccg acggcaccgg ccacgccatg ctgtacgcgg
     1081 tgagcgatcg cgcgatcgcc gaatcggtcg ccgtccacga gcgcatggaa gcgatcgcgc
     1141 tgatccatga aggcggccgc tgctacggcg cggtcgttcg caacctcgcc accggcgagc
     1201 tcagcgccta cgtcgcgaag gcgaccgtca tcgccacggg cggggcgggg cggctctatc
     1261 gggtgacgac caacggcgtg atctgcgaag gcatcggcgg cgcgatcgcg ctcgagaccg
     1321 gcatcgcgac gctcggcaac atggaggcga tccagttcca cccgaccgcc atcttcccgg
     1381 ccgggatcct cgtcaccgaa ggctgccgcg gcgacggcgg gctgctgaag gacgtcgacg
     1441 gccaccgctt catgcccgac tacgagcccg agaagaagga gctcgcctcg cgcgacgtcg
     1501 tctcgcgccg catggagacg cacatccgca agggcaaggg cgcgcagtcg cgcttcggcg
     1561 agcacctctg gctcgacatc acgcagctcg gccgcgccca catcgagaag aacctgcgcg
     1621 aggtcaagga gatctgcgag gcattcctcg gcatcgatcc ggtcgagaag atgatcgccg
     1681 tgcgtcccgc ccagcactac acgatgggcg gcgttcgcac caaccacacc ggccagagcc
     1741 cgacgctgaa ggggctgttc gccgccggcg aggccgcttg ctgggacatg cacggcttca
     1801 accggctcgg cggcaactcg gtggccgaga cggtggtggc cgggatgatc gtcggcgact
     1861 tcgtggccga cttctgcgac gacgtcggca acgacgtgcg catcccgacc gggctcgtgc
     1921 gcgagttcgt cgcctccgag caggccaagc tcgaccgcct ggtctcgggc gccgccggcg
     1981 acgaggatgc gtcggcgatc aaagcggcga tgcagaacgt gatgaccgcc aaggtcggca
     2041 tcttccggac cggtgccgag ctcgcgtccg cggtcgacga gctccaggcg ctgctcgagc
     2101 gcagccgccg catcggcctg cgccacaagg cggcaggggc caacccggag ctcgcgactg
     2161 cgtaccgggt gcagaagatg ctcaaggtcg cgctctgcat cgcccacggc gcctcgcaac
     2221 ggaccgaaag ccggggcgcg catttccgcg aggacttccc gcgccgcgac gacgcgcagt
     2281 ggctgaagcg cacgctcgcg agctggaaag gcgaggccga cacgctgccg acgctcgcct
     2341 acgaggcact cgacgtccga tcgatggagc tgccgccggg ctggcgcggc tacggcgcca
     2401 aggactatgt cgaccacccg gacacggcgg cgcgcactgc cgaggtcgtc gcgctgcgcg
     2461 agcggatcaa ggatgcgccg cgcttcgagg tgcaaagggc gctcatgccg tacgacgatc
     2521 tcctgccgcg cggcctgcgc ggacgcaacg agcgcatcga cgagccgctg ccatgaggat
     2581 ccccatccac ccggtcgcgc cggcgctggt gcagacggct cctgccgctg ccgacacggc
     2641 gacgcgtctg ctgaagatcc gcatcctgcg cttcgatccg cgccagcccg agaccctgcc
     2701 gcactggcag acctacgagc tgctcgacgc cgccggcatg acgctcttca tcgccttgag
     2761 cgagatccgc gagaagctcg atccttcgct gcagttcgac ttcgtctgcc gcgccggcat
     2821 ctgcggcagc tgcgcgatgc tgatcaacgg caggcccggg ctggcgtgcc ggacgttgac
     2881 caagaacctc gacctcgagt tcacgctggc gccgctgccg gtgttcgagc tgatcggcga
     2941 cctctcggtc gacaccggca agtggatgcg cggcatgagc gagcggctgc agacctgggt
     3001 gcaccagcag gaagaggccg tcgacctgag gcggctcgag gcccgcatgg agcccgagct
     3061 cgccgaaaag atctacgagc tcgaccgctg catcgagtgc ggctgctgcg tcgccgcgtg
     3121 cggcacggcg cgcatgcgcg aggacttcgt cggcgccgtc ggcctcaaca agatcgcgcg
     3181 ctttcgcctc gatccgcgcg acacgcgcga cgacgacgac ttctacgagc tgatcggcga
     3241 cgacgacggc gtgttcggct gcatgtcgct gctcggctgc cacgacgtct gcccgaagca
     3301 gctgccgctg tcgacccaga tcgccttcct gcgccgcaag atggtcgcga tggccttcaa
     3361 gtgaagcggc gccgggacac ccgaattcct cgaaggagat attcatgaat gcaggaacat
     3421 cgcgccgccg gatggtggcg ctcgtcgccg ccctgggcgg tgcgctcgcg atctccgtca
     3481 gtgcgcagcc gcaggcgccg atcgtcatca agttcagcca cgtcgtcgcg accgacacgc
     3541 ccaagggcct ggcctcggag ttctttgcca agcgcgctgc cgagctgacc aaaggcaagg
     3601 ccaaggtaga ggtctacgcg aacagccagc tctacaagga caaggaagag atggaggccc
     3661 tgcagctcgg cgccgtgcag atgctcgccc cttcgctcgc caagttcggc ccgctcggcg
     3721 tgaaggagtt cgaggtgttc gacctgccct tcatcttcga cgactacaag tcgttgcaca
     3781 aggtcacgca gggccccctc ggcaagcagc tgctcgacaa gctcgagacg aagggaatca
     3841 agggcctggc gtactgggac aacggcttca agtcgttctc ggccaacaag gccatcagga
     3901 cgccggccga catgaagggg ctgaagctgc ggatccagtc gtccaaggtg ctcgacgaag
     3961 agatccgcgc cctcggcggc gtgccgcagg tgatggcgtt ctcggaggtg tatcaggcgc
     4021 tccagaccgg cgtcgtcgac ggcaccgaaa acccgatctc gaacctctac acgcagaaga
     4081 tgcacgaggt gcagaagtac ctgacgatca ccgagcacgg ctacctcggc tacgcggtga
     4141 tcgtcaacaa gaagttctgg gacggcctgc ctgccgacgt gcgcggcccg ctcgagcagg
     4201 cgatgaagga ggcgaccgac tacgccaaca agatcgccaa ggaacagaac gacctcgatc
     4261 tcgaagccgt caagaaggcc ggccgcaccc aggtctacgt gccgacgaag gaagagcgga
     4321 tggccttcaa gaaggcgctc gtcccggtgc acaagaccat ggagtcgcgc atcggcgccg
     4381 acctgatcaa atccatctac aaggaaaccg ggttcgatcc gggcaagctc tgattccctg
     4441 agaagcggcg gcgccgggcg gcggcgaagc cgcaccggta ttcccgagga ggcagcggat
     4501 gaaggtactc gaccacctcg aggagtggct gatctcgttc ctgatggggg gagcgacgct
     4561 catcatcttc ttctccgtcc tgcaccgcta tctcgcggcc acgccgattc ccggcgtcca
     4621 ggactggatg ctgcacctga acttcagctg ggcgcaggag ctgtgcatca tcatgttcgt
     4681 ctggatgtgc aagttcggcg ccgcctatgg tgtccgcacc ggcatccacg tcggggtcga
     4741 tgtcgtcgtc aaccgcctcg acgagaagat gcgcggccgg gtcgtccttt tcggcttgct
     4801 cgccggagcc ctcttcaccg gcgccatcgg cgcactcggc gcccacttcg tgtgggacaa
     4861 cggcgctcac tacgcgttcg tgaaggcctt gggcctggac gtcggagccc agtacgaggg
     4921 gccgacgacg ccggatctgg agtggccgac ctgggcagtc tattcggcga ttccgctcgg
     4981 ctcgtcgctg atgtgcttcc gggtccttca ggtcgcctgg gccttctgga agaccggcga
     5041 g
//
LOCUS       DASVHM010000667         5170 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_262623, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000667 DASVHM010000000
VERSION     DASVHM010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5170
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262623"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..660)
                     /gene="hisG"
                     /locus_tag="VF308_12340"
     CDS             complement(25..660)
                     /gene="hisG"
                     /locus_tag="VF308_12340"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005792752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEX7437491.1"
                     /translation="MITLALSKGRIFEETLPLLRAAGIDVAEDPEKSRKLILATSRAD
                     LRLVLVRASDVPTYVQHGGADLGVVGQDTLIEHGGQGLYQPLDLRIARCRMSVAVRDD
                     FDYAAAVRHGSRIRVATKFTKIASDHFANKGVHVDLIKLYGSMELAPLTGLAEAIVDL
                     VSSGNTLKANHLVEVETIMPISARLIVNQAALKLKRAAIRGIIDSLAAARP"
     gene            complement(689..1972)
                     /gene="murA"
                     /locus_tag="VF308_12345"
     CDS             complement(689..1972)
                     /gene="murA"
                     /locus_tag="VF308_12345"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019426343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEX7437492.1"
                     /translation="MDKLIIRGGRRLEGEVAISGAKNAALPELCAALLTEEPVTLANV
                     PQLHDVGTALKLLRNMGVVAERSAAQPDRVTLDAANVASREAPYELVKTMRASILVLG
                     PLLARFGEATVSLPGGCAIGSRPVDQHIKGLQAMGASINVEHGYIVARAPRAAGGLKG
                     THITTDMVTVTGTENLMMAATLADGETVLENAAQEPEIADLAEMLIAMGASIEGHGSS
                     RIRIHGVDRLHGLGGATGHRIVPDRIEAGTFLCAVAATGGDVVLRGARADHLGAVIDK
                     LREAGVTIEAGPDWIRVRSDARLHAVSFRTREYPAFPTDMQAQFMALDCIAEGSAAVT
                     ETIFENRFMHVNELVRLGAKIEIDGNTAVVHGVARLSGATVMATDLRASASLVIAGLV
                     ADGETTIERIYHLDRGYDQMETKLRAIGADIERVR"
     gene            complement(1986..2237)
                     /locus_tag="VF308_12350"
     CDS             complement(1986..2237)
                     /locus_tag="VF308_12350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990229 - iron-sulfur cluster assembly
                     complex [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HEX7437493.1"
                     /translation="MADPTPADIQRFIVAGLACEHVEVEGDGRHFFATIVSREFEGTS
                     RVARHQRVYQALGERMREQIHALSMKTLTPAEWAQTSAA"
     gene            complement(2309..3073)
                     /locus_tag="VF308_12355"
     CDS             complement(2309..3073)
                     /locus_tag="VF308_12355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437494.1"
                     /translation="MTALSGTRTLLYKEVLRFWKVSFQTVAAPVLTAVLYLLIFGHVL
                     EGRVTVFGSVGYTSFLIPGLVMMSVLQNAFANSSSSLIQSKITGNLVFLLVTPLSHWA
                     WFLAYVGASLVRGVVVGAGVMMVTVWFAPLHLAAPVWIVVFTLAGATLMGALGLIAGL
                     WAEKFDQIAAFQNFIIMPMTFLSGVFYSVQSLPPFWQAVSHLNPFFYMIDGFRHGFFG
                     VSDVSPWTSLVVVGCSLALTCGVCLRLLRTGYKIRL"
     gene            complement(3070..3993)
                     /locus_tag="VF308_12360"
     CDS             complement(3070..3993)
                     /locus_tag="VF308_12360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013900132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437495.1"
                     /translation="MPAISFQNVCKTFAGARGEVRALDDVSFDIEPGEFFGLLGPNGA
                     GKTTLISILAGLAGATRGHVTVLGHDVVTHYAQARRSLGVVPQELVFDPFFSVRETLR
                     IQGGYFGVHHNEAWIDELLANLGLADKADANMRQLSGGMKRRVLVAQALVHRPPVIVL
                     DEPTAGVDVELRQTLWQFVARLNKEGHTVLLTTHYLEEAEALCGRIAMLKQGRVVALD
                     RTSALLAGTASTMLRFKLDRPLPAQLAAQSRVTGRTVQIKAHDAREVEAILATLRGAG
                     CEPEDLEIGRADLEDVFLEIMHGETPQRVAA"
     gene            4093..4755
                     /locus_tag="VF308_12365"
     CDS             4093..4755
                     /locus_tag="VF308_12365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011465797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX7437496.1"
                     /translation="MASHAKTPRRTAERILEVTLELFNRFGEPNVSTTAISAELGISP
                     GNLYYHYPAKDELINKLFDRYEAKLAELLRAAEDVRNVEDAWFFFHVLFELIWQYRFL
                     YRDLNDLLSNNRRLETHFQFVLQNKSRAVHAVLDGLTRSHGVRIEPRDAEPVATAMVV
                     VLTYWLSFEYVRDPRKALEPAGADAALLRGAFHVLSLLLPYLEAGEREHLHELVGRYN
                     EN"
     gene            4770..>5170
                     /locus_tag="VF308_12370"
     CDS             4770..>5170
                     /locus_tag="VF308_12370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010462621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437497.1"
                     /translation="MAKWTAFPHDAAAYTYDTATLKKNWARLHAGDAEPLPKDEKVLA
                     AWRLFHAGEYHKAVEAGLKAVAAGAPAGLTVANKGQAIYANYLEASERAKQALFMEVV
                     ARADKRIAEDPKDANAWYCMAYALGRYSQSI"
BASE COUNT          870 a         1731 c         1778 g          791 t
ORIGIN      
        1 gcgacggaca tggcgaggct gtcttcaggg ccgggcggcg gccagcgaat cgatgatgcc
       61 gcggatcgca gcgcgcttga gtttcaaggc tgcctggttg acgatcaggc gcgccgaaat
      121 cggcatgatg gtctcgacct cgaccaaatg gttggccttc agggtgttgc ccgaggagac
      181 gaggtcgacg atcgcttcgg caagcccggt gagcggggcg agctccatcg agccgtacag
      241 cttgatcagg tcgacgtgga cgcccttgtt ggcgaaatga tcgctcgcga tcttcgtgaa
      301 cttggtcgcg acgcggatgc gtgagccgtg ccgcacggcg gcggcgtagt cgaaatcgtc
      361 gcgcaccgcg acgctcatgc gacagcgcgc gatgcgcagg tcgagcggct ggtagagccc
      421 ctgcccgccg tgttcgatca gcgtgtcctg tccgaccacg cccaggtcgg cgccgccgtg
      481 ctgcacatag gtcggaacgt cggaggcgcg caccagcacc aggcgtagat cggcccggct
      541 ggtggcgagg atcagcttgc ggctcttttc cgggtcttcg gcgacgtcga tgccggcggc
      601 gcgcagcagc ggcagcgtct cctcgaagat ccgccctttc gacagcgcga gcgtgatcac
      661 gatcgccgcg cccgttcgag acggcgtttc atcggacccg ctcgatatcg gcaccgatcg
      721 cgcgcagctt ggtttccatc tggtcgtagc cgcggtcgag gtgatagatg cgttcgatcg
      781 tggtctcgcc atcggccacg agcccggcga tgacgaggct cgccgaggcg cgcaagtcgg
      841 tcgccatgac ggtcgcgccc gagagccgcg ccacgccgtg cacgaccgcc gtgttgccgt
      901 cgatctcgat cttcgcaccg aggcggacga gttcgttgac gtgcatgaag cggttctcga
      961 agatcgtctc ggtgaccgcc gccgagccct cggcgatgca atcgagcgcc atgaactggg
     1021 cctgcatgtc ggtcgggaag gccgggtact cgcgggtgcg aaagctcacc gcgtgcaggc
     1081 gcgcgtcgct gcgcacccgg atccagtccg ggcccgcctc gatcgtcacg ccggcctcgc
     1141 gcagcttgtc gatcaccgca ccgaggtgat cggcgcgcgc cccgcgcagc accacgtcgc
     1201 cgccggtcgc ggcgacggcg cagagaaaag tgcccgcctc gatgcggtcg ggcacgatgc
     1261 ggtggccggt cgcgccgccg aggccgtgca ggcgatcgac accgtggata cggatgcggc
     1321 tgctgccgtg tccttcgatc gacgcgccca tcgcgatcag catctcggcc aggtcggcga
     1381 tctcgggctc ctgggccgcg ttttcgagca ccgtttcacc gtcggcgagc gtcgccgcca
     1441 tcatcaggtt ctcggtgccg gtcacggtca ccatgtcggt cgtgatgtgc gtgcccttca
     1501 atccacccgc cgcgcgcggc gcccgggcga cgatgtagcc gtgctcgaca ttgatcgagg
     1561 cgcccatcgc ctgcaggccc ttgatgtgct ggtcgacggg gcgcgagccg atcgcgcagc
     1621 ccccgggcag cgacaccgtc gcctcgccga agcgcgccag gagcggcccg agcacgagga
     1681 tcgaggcccg catggtcttg acgagctcgt acggggcctc gcgcgaggcc acgttcgccg
     1741 catccagcgt cacgcgatcg ggctgcgcgg cgctgcgctc ggcgacgacg cccatgttgc
     1801 gcagcagctt gagcgcggtg ccgacgtcgt gcaactgcgg cacgttggcg agcgtcaccg
     1861 gctcctcggt gagaagcgcg gcgcacagct ccggcagggc cgcgttcttg gcgccggaga
     1921 tcgcgacctc gccttcgagc cggcggccgc cccggatgat gagcttgtcc acgaaaggtc
     1981 ggaactcagg ctgcggaggt ctgcgcccac tcggcggggg tcagcgtctt catcgacagc
     2041 gcgtggatct gctcgcgcat gcgctcgccg agcgcctggt agacgcgctg gtggcgggcg
     2101 acccggctcg tgccttcgaa ctccctcgag acgatggtgg cgaagaaatg gcggccgtcg
     2161 ccctcgactt cgacatgctc gcaggccagg cccgcgacga tgaaacgctg gatgtcggcg
     2221 ggggtcggat cggccatttg tcaatgttac cgggtcgggc cggcgcttcg cgccgcgcgg
     2281 cgaaagccct ggtgcgacga cccggggatc aaaggcggat cttgtagccc gtgcgcagca
     2341 ggcgcaggca cacgccgcag gtgagggcga ggctgcagcc gaccaccacg aggctggtcc
     2401 agggcgacac gtcgctcacg ccgaagaagc cgtggcgaaa gccgtcgatc atgtagaaga
     2461 acggattgag gtggctcacc gcctgccaga acggtggcag cgactggacc gaatagaaca
     2521 cgccggagag aaaagtcatc ggcatgatga tgaagttctg gaacgcggcg atctgatcga
     2581 atttctcggc ccacaggccg gcgatcaggc cgagcgcgcc catcagcgtc gccccggcga
     2641 gggtgaagac gacgatccag acgggcgccg ccaggtgcaa gggcgcgaac cacaccgtca
     2701 ccatcatcac gccggcgccg acgacgacgc cgcgcaccaa cgaggcgccc acgtaggcga
     2761 ggaaccaggc ccagtgcgag agcggcgtga ccagcaggaa cacgaggttg ccggtgatct
     2821 tgctctggat cagcgaggaa ctgctgttgg cgaacgcgtt ctgcaacacg ctcatcatca
     2881 cgaggccggg aatcaggaag ctggtgtagc cgaccgagcc aaagaccgtg acccgtcctt
     2941 cgagcacgtg gccgaagatc aggagataga gcaccgcggt caggaccggg gcagccaccg
     3001 tctggaagct caccttccag aaacgcagca cctccttgta gagcagcgtg cgtgttcccg
     3061 agagcgccgt catgcggcga ccctctgcgg cgtttcgccg tgcatgatct cgaggaagac
     3121 gtcctcgaga tcggcgcgtc cgatctcgag gtcttcgggc tcgcagccgg cgccgcgcaa
     3181 ggtcgcgagg atggcctcga cctcgcgcgc gtcgtgcgcc ttgatctgca cggtgcggcc
     3241 ggtgacgcgc gactgcgccg ccagctgcgc cggcagcggt cgatcgagct tgaagcgcag
     3301 catcgtgctc gccgtgccgg cgagcagcgc cgaggtccgg tcgagcgcga cgacgcggcc
     3361 ctgcttgagc atcgcgatgc ggccgcacag cgcctcggct tcctcgaggt agtgcgtggt
     3421 cagcagcacc gtgtggcctt ccttgttgag ccgggcgacg aactgccaga gggtctggcg
     3481 cagttcgacg tcgacgccgg cggtcggctc atcgagcacg atcaccggcg ggcggtgcac
     3541 cagcgcctgg gccacgagca cgcggcgctt catgccaccc gaaagctggc gcatgttggc
     3601 gtcggccttg tcggcgaggc cgaggttggc gaggagctcg tcgatccagg cctcgttgtg
     3661 gtggacgccg aagtagccgc cctggatgcg cagcgtttcg cgcacgctga agaaggggtc
     3721 gaagaccagt tcctgcggca ccacgccgag gctgcggcgc gcctgggcgt agtgggtcac
     3781 gacatcgtga ccgagcaccg tgacatggcc gcgcgtcgcg ccggcgaggc cggcgaggat
     3841 gctgatcaag gtcgtcttgc cggcgccgtt ggggccgagc aggccgaaga attcacccgg
     3901 ttcgatgtcg aaactcacgt cgtcgagcgc gcgcacctcg ccgcgcgcgc cggcgaaggt
     3961 cttgcacacg ttctggaacg aaatggccgg catggaggcc gcgattgtag gcactgaccc
     4021 tcggcgggac ggcgctcgtc ggggctcgtg ccgatggaca ggcggcggcg cgatgctaga
     4081 ttcgtgcgaa ccatggccag ccacgccaag acgccgcgcc gcaccgccga gcgcatcctc
     4141 gaggtcacgc tcgagctctt caaccgcttc ggcgagccga acgtctcgac caccgcgatc
     4201 tcggccgagc tcggcatcag cccgggcaac ctctactacc attacccggc caaggacgaa
     4261 ctgatcaaca agctcttcga ccgctacgag gcgaagctcg cggagctcct tcgcgccgcc
     4321 gaggacgtcc gcaacgtcga agacgcctgg ttcttcttcc acgtgctgtt cgagctgatc
     4381 tggcagtacc gcttcctcta ccgcgacctg aacgacctgc tctcgaacaa ccgccgcctc
     4441 gagacccatt tccaattcgt gctgcagaac aagtcgcgcg cggtgcacgc cgtcctcgac
     4501 ggcttgaccc gcagccacgg cgtgcgcatc gagccgcgcg acgccgaacc ggtcgcgacc
     4561 gcgatggtag tcgtgctgac ctactggctc agcttcgaat acgtgcgcga tccgcgcaag
     4621 gccctcgaac ccgcaggcgc cgacgcggcc ctgctgcgcg gcgctttcca tgtgctgagc
     4681 ctgttgctac cctatctcga ggccggcgag cgcgagcacc tgcatgaact ggtggggcga
     4741 tacaacgaaa actgaggaga caagacatca tggccaaatg gaccgctttc ccgcacgacg
     4801 ccgcggcgta cacctatgac accgcgacgc tgaagaagaa ctgggcgcgg ctgcacgccg
     4861 gcgacgccga accgctgccc aaggacgaga aggtgctcgc ggcgtggcgc ctgttccatg
     4921 ccggcgagta ccacaaggcc gtcgaggccg gtctcaaggc cgtcgccgcc ggagccccgg
     4981 ccggcctcac ggtcgcgaac aaggggcagg cgatctacgc caactacctc gaggcgagcg
     5041 aaagggccaa gcaggcgctc ttcatggaag tcgtcgcacg cgccgacaaa cggatcgccg
     5101 aagacccgaa ggatgccaac gcctggtatt gcatggccta tgcgctcggc cgctacagcc
     5161 agagcatcag
//
LOCUS       DASVHM010000668         2540 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_262636, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000668 DASVHM010000000
VERSION     DASVHM010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2540
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262636"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..216)
                     /locus_tag="VF308_12375"
     CDS             complement(<1..216)
                     /locus_tag="VF308_12375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEX7437498.1"
                     /translation="MTTLRAGWRLVRGVLHAVHGVLICAVVFPFLDEAARMRRVAWWS
                     GRMLRLMGINLRPAGRIRPGAVLLLANH"
     gene            complement(230..1549)
                     /locus_tag="VF308_12380"
     CDS             complement(230..1549)
                     /locus_tag="VF308_12380"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEX7437499.1"
                     /translation="MKILISGGRVVDPASGRDAVGDIAVADGRIIALGERVADFTPDR
                     TIAAGGLVVAPGLVDLAARLREPGHEHEAMLESEMAAAVAGGITSVVCPPDTEPVLDE
                     PGLVQMLKFRAGSLNLARLYPLGALTRGLAGDTLTEMAELTEAGCIGFSQADVALKDT
                     LVLHRALQYAATFDFGVWLRPNDAWLGEGVAAKGALATRLGLSGVPVLAETIALATIF
                     ELVRDTGARVHLCRLSSAAGIDLVRRAKAEGLPVTCDVSINHLHLTDIDIGFFNASMR
                     LTPPLRQQRDRDAIRAALADATIDALVSDHTPVGEDAKNLPFAEAEPGATGLELLLSL
                     ALHWGAASGLPLVRTLARVTSGPAAVLGDGRGGAVSSLAPGAGSLVEGGAADLCIFDP
                     GAHWTVAPAALRSQGKHTPFAGYELPARVRYTLVAGAVAFESGPRSA"
     gene            complement(1546..2508)
                     /locus_tag="VF308_12385"
     CDS             complement(1546..2508)
                     /locus_tag="VF308_12385"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEX7437500.1"
                     /translation="MLALKNPQLNRHEELIHLLSIEGLPRQVLHHILDTAGTFLSVNE
                     REVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVINLDIARSSTAKGESLLD
                     TIANLSAMHADMFVVRHGESGAPYLIAQHCAPHVHVVNAGDGRHAHPTQGLLDMYTIR
                     HYKRDFTNLTVAVVGDIVHSRVARSDIHALTTLGVPEIRAVGPKTLVPGDLKEMGVRV
                     CHDMSEGIRGADVVIMLRLQNERMSGAMLPSAGEFSKTYGLTAAKLALAKPDAIVMHP
                     GPINRGVEIDSAVADGAQSVILPQVTFGIAVRMAVMSIIAGNNP"
BASE COUNT          395 a          863 c          901 g          381 t
ORIGIN      
        1 gtggttcgcg agcaacagaa ccgcacccgg ccggatccgg ccggccggcc tgaggttgat
       61 gcccatcagc cggagcatcc gccccgacca ccaggccacg cgccgcatgc gcgcggcctc
      121 gtcgaggaac ggaaacacga ccgcgcagat caggacgccg tgcacggcat ggagcacgcc
      181 gcgaaccagg cgccaacccg cgcgcagggt cgtcacgggc agagtgtgtt cacgctgaac
      241 gcggacccga ttcgaaggcc acggcgccgg ccaccagcgt gtaccgaacc cgggccggca
      301 gttcgtagcc ggcgaacggc gtgtgcttgc cctggctgcg cagggccgcc ggcgccaccg
      361 tccagtgcgc gccgggatcg aagatgcaca agtcggcggc gccgccctcg acgaggctgc
      421 cggctccggg cgcgagactg ctcacggctc ccccgcgtcc atcgccgagc actgccgccg
      481 gtcccgaggt cacgcgggca agcgtgcgca ccagcggcag gccggaagca gcgccccaat
      541 gcaacgcgag actcagcagc agctcgaggc cggtcgcacc gggctcggct tcggcgaaag
      601 gaaggttctt cgcgtcttcg ccgaccgggg tgtgatcgct gaccagcgca tcgatcgtcg
      661 cgtcggcgag cgcggcgcgg atcgcgtcgc gatcgcgctg ctggcgcagc ggcggggtca
      721 ggcgcatcga cgcgttgaag aagccgatgt cgatgtcggt caggtgcaga tggttgatgc
      781 tcacgtcgca ggtgacgggc aggccttcgg ccttggcgcg gcgaacgaga tcgatgccgg
      841 cggcgctgct gaggcggcac aggtgcacgc gcgcgccggt gtcgcgcacg agctcgaaga
      901 tcgtcgcaag cgcgatcgtc tcggccagca ccggcacccc ggacaggccc aaccgcgtcg
      961 caagcgcccc cttcgcggcg acgccttcgc cgagccaggc gtcgttcggc cgcagccaga
     1021 caccgaagtc gaaggtcgcc gcgtactgca acgcgcgatg cagcaccaac gtgtccttga
     1081 gcgccacgtc ggcctgcgag aagccgatac agccggcttc ggtcagctcg gccatctcgg
     1141 tgagcgtgtc gccggccagc ccgcgcgtga gcgcgccgag cggatagagc cgcgccagat
     1201 tgaggctgcc ggcacggaac ttgagcatct ggaccaggcc gggctcgtcg agcaccggct
     1261 cggtgtcggg tgggcagacg acgctggtga tgccaccggc caccgccgcg gccatttccg
     1321 attcgagcat ggcctcgtgt tcgtggccgg gctcgcgcag gcgcgcggcc agatcgacca
     1381 ggccgggggc gacgaccagg ccgcccgcgg caatcgtgcg atcgggggtg aagtcggcca
     1441 cgcgttcgcc cagcgcgatg atccgtccgt cggcgacggc gatgtcgccg accgcgtcgc
     1501 gcccgctcgc cgggtcgacg acgcgcccgc cgctgatcag gatcttcatg gattgttccc
     1561 ggcgatgatc gacatcaccg ccatgcgcac cgcgatgccg aaggtcacct gcggcaggat
     1621 cacgctctgc gcgccgtcgg ccaccgccga atcgatctcg accccacggt tgatcggccc
     1681 ggggtgcatc acgatcgcgt cgggcttggc gagggcgagc ttcgcggccg tcaggccata
     1741 ggtcttggag aactcgccgg cgctcggcag catcgccccg ctcatgcgtt cgttttgcag
     1801 ccgcagcatg atgaccacat cggcgccgcg gatgccttcg ctcatgtcgt ggcagacccg
     1861 cacgcccatc tccttcaggt cgcccgggac gagggtcttc gggccgaccg cgcggatctc
     1921 cggcacgccg agcgtggtga gcgcatggat gtcggagcgc gcgacccgcg aatggacgat
     1981 gtcgccgacc accgcgaccg tgagattcgt gaagtcgcgc ttgtagtgtc tgatcgtgta
     2041 catgtcgagc aggccctgcg tcgggtgagc atggcgaccg tccccggcgt tgacgacgtg
     2101 gacatgcggc gcgcagtgct gcgcgatcag gtacggcgcc ccgctctcgc cgtggcgcac
     2161 gacgaacatg tcggcatgca tcgccgacag gttcgcgatc gtgtcgagca ggctttcgcc
     2221 cttggccgtg ctcgagcgcg cgatatcgag gttgatcaca tcggcggaaa gccgcttggc
     2281 ggcgatctcg aacgtggtgc gcgtgcgcgt gctgttctcg aagaagaggt tgaagacgct
     2341 cttgccgcgc aggagcggca ccttcttgac ttcgcgttcg ttgacgctca ggaaggtgcc
     2401 ggcggtgtcg aggatgtggt gcagcacctg gcgcggcagg ccctcgatcg acaacaggtg
     2461 gatcagctct tcgtggcggt tgagttgcgg gtttttcaga gccagcatcg tgggcctcac
     2521 cggatctcga agctgaagcg
//
LOCUS       DASVHM010000669         2002 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1273917, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000669 DASVHM010000000
VERSION     DASVHM010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1273917"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            243..1067
                     /locus_tag="VF308_12390"
     CDS             243..1067
                     /locus_tag="VF308_12390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HEX7437501.1"
                     /translation="MTQDARLHLLDIDIPAQPAGLVALSLLLAEEEVDLQAVSLLISS
                     DMALAAAVLKAVNSARYGLRGRVQSVQQAITYLGTREVAAVTFELGLRAVFPAAPELE
                     RLWERASVRGLLMGRIGQALNVDPWAAHSAGLFEECGKAVMFRHASARYGPMLRKAEN
                     DEELLMLEHEEFGVSHDTLGAALCESWGVAAPAVDSVRFHVIVNSTLALPMQLQRRSI
                     CALSALAHALMTDPDTVDEVARKVAPQAGLEALLVRRATRQVQEQIESAVARHDLG"
     gene            1174..1632
                     /gene="soxY"
                     /locus_tag="VF308_12395"
     CDS             1174..1632
                     /gene="soxY"
                     /locus_tag="VF308_12395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019430131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate oxidation carrier protein SoxY"
                     /protein_id="HEX7437502.1"
                     /translation="MPTRREMIARSAAVAALLAAAGVLPARAQAAWNKAAFDAKSIDE
                     VLKALGAAKPVESKEILLTAPDIAENGAVVPIAASTSLPDVRQFVFLIEKNPTTLAGS
                     FEFTDAVETSVATRVKMAQTSNVFVVAMLGDGRTLFAKKEVKVTLGGCGG"
     gene            1676..1987
                     /gene="soxZ"
                     /locus_tag="VF308_12400"
     CDS             1676..1987
                     /gene="soxZ"
                     /locus_tag="VF308_12400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003053938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate oxidation carrier complex protein
                     SoxZ"
                     /protein_id="HEX7437503.1"
                     /translation="MSDPMRIRAQVQGSGAIVRVLMSHEMETGLRKDADGKIVPAWHI
                     TEVSAALNGKTVLTAHWGTAIAKNPFTQFTVKGAKAGDKIAVTWVDNRGDRRTDEASV
                     A"
BASE COUNT          333 a          678 c          698 g          293 t
ORIGIN      
        1 gcacctgcat ggtgcccgcc aaggcggggt ggggagacac gaaaagggcg ccgggcaacc
       61 ggtgcccttt tttcttgtgg cctgccacga atggtgggct tcgtcttgcg gttggcgcga
      121 cgaagcgggc cggatcgcgg cgtattcacc attgtggcga gcctgtggat cgcgcaggcg
      181 ccccgggcgg ctcgtgtttg cataacatcc ccgtcgattc ggccacgcgc aagcaccgcc
      241 ccatgaccca ggacgcacga ctgcatctgc tcgacatcga catcccggcg caacccgccg
      301 ggctggtcgc gctctcgctg ctcctcgccg aagaagaggt cgacctgcag gcggtcagtc
      361 tcctgatcag ctccgacatg gcgctcgccg ccgcggtgct gaaggcggtc aattcggccc
      421 gctacggctt gcgcggacgg gtgcagagcg tgcagcaggc gatcacctac ctcggcacgc
      481 gcgaagtcgc ggcggtcacc ttcgagttgg gcctgcgcgc cgtctttccg gcggcccccg
      541 agctcgagcg gctctgggag cgggccagcg tgcgcggcct gctgatgggc cgcatcggcc
      601 aggcgttgaa cgtcgacccg tgggcggcgc attcggcggg cctcttcgag gaatgcggca
      661 aggcagtgat gttccgccat gcgagcgcac gctatggccc gatgctcagg aaggccgaaa
      721 acgatgaaga gttgctgatg ctcgaacacg aagagttcgg cgtcagccac gacacgcttg
      781 gcgcggccct ctgcgaaagc tggggggtcg ccgcgccggc ggtcgacagc gtgcgcttcc
      841 acgtgatcgt caacagcacg ctcgcgctgc cgatgcaatt gcagcggcgc tcgatctgcg
      901 ccctctcggc gctcgcccat gcgttgatga ccgaccccga caccgtcgac gaggtggcgc
      961 gcaaggtggc gccgcaggcc ggcctcgagg ccctgctggt gcgacgggcg acgcggcagg
     1021 tgcaggagca gatcgagtcg gccgtagcac gccacgacct cggctgacga aggccccgcg
     1081 cggaccgggg cgtaggcgca acccgcaggc gtggcggcgc catcggcgcg acaatcccgg
     1141 gtcgagccgc gcggctcccg tggagatgac ccgatgccaa cccgtcgcga aatgatcgcg
     1201 cgcagcgctg ccgtggcggc gctgcttgcc gccgccggcg tgctgcccgc ccgagcccag
     1261 gccgcctgga acaaggccgc cttcgacgcc aagtcgatcg acgaggtcct gaaggcgctc
     1321 ggtgccgcca agccggtcga gagcaaggag atcctgctca ccgcacccga catcgccgag
     1381 aacggcgccg tcgtgccgat tgccgcgagc acgtcgttgc ccgatgtcag gcagttcgtc
     1441 ttcctgatcg agaagaatcc gaccacgctc gccggcagct tcgagttcac cgacgccgtc
     1501 gagacgagcg tcgcgacgcg cgtcaagatg gcgcagacct cgaacgtctt cgtggtcgcc
     1561 atgctgggcg atggccgcac gctcttcgcc aagaaggaag tcaaggtgac cctcggcggc
     1621 tgcggcggct gagccggctt aggcgcacct tcggcatttc gaccaggaga caaccatgtc
     1681 cgacccgatg cgcattcgcg cgcaggtgca aggcagcggc gccatcgtgc gcgtgctgat
     1741 gagccatgaa atggaaaccg ggctgcgcaa ggatgcggac ggcaagatcg ttccggcgtg
     1801 gcacatcacc gaggtcagcg ccgcgctgaa cggtaagacc gtgttgacgg cgcactgggg
     1861 taccgcgatc gccaagaacc cgttcaccca gttcaccgtc aagggcgcga aggccggcga
     1921 caagatcgcc gtgacctggg tcgacaaccg cggcgaccgg cgcaccgacg aagccagcgt
     1981 cgcatgaggc gcgctggcgc cg
//
LOCUS       DASVHM010000670         2055 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1200874, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000670 DASVHM010000000
VERSION     DASVHM010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2055
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1200874"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..712)
                     /locus_tag="VF308_12405"
     CDS             complement(98..712)
                     /locus_tag="VF308_12405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX7437504.1"
                     /translation="MPRPTFREKMLRSREEAIVVSVNRLLAEKGFDTMTMDEVAADVG
                     IAKASLYKHFTSKEELAAAAMIRALDRALEEVERLEGAGPTGEVDRLKAMTRWTLEQQ
                     LAGEMLSLPAQNSALRTALMTNKAYLDRLMRLSDRLGAWITAAQKAGELNSKLPPEVV
                     LYTLFARACDPVLSLLKVGANFSDAQIADMLISTCFDGLVGPAR"
     gene            complement(788..1087)
                     /locus_tag="VF308_12410"
     CDS             complement(788..1087)
                     /locus_tag="VF308_12410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437505.1"
                     /translation="MLPDQARFRRAVACEKVHTVKLLPAILAPAMKLLPDSWFTALKA
                     WRLRRRAGKEPADMGTAFGLDSITVVDFEPTAAPSEAGTAPVSDWHRRLARRSRL"
     gene            complement(1120..1593)
                     /locus_tag="VF308_12415"
     CDS             complement(1120..1593)
                     /locus_tag="VF308_12415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007848695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7437506.1"
                     /translation="MHTLFHRLLVVAVLLLGAAQAWAADTANPSTPDKLTAARARIAE
                     KNWPAAIDELKRVNDTGSADWNNLMGYSMRKQGTPDYAAAEKFYDEALRIDPKHRGAL
                     EYSGELYLMTGDLPKAEARLAALDKACRFSCEEYRDLKRAVERYKGAGNKFVAAP"
     gene            1723..>2055
                     /locus_tag="VF308_12420"
     CDS             1723..>2055
                     /locus_tag="VF308_12420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-shock protein"
                     /protein_id="HEX7437507.1"
                     /translation="MYCAIDFGTSNSAVAIPDGAGAMHLVELEAGFTTMPTAVSYSVE
                     GSEAAGPPRAFGRAAVAVYVDGVDGRLMRSMKSILGSSLIDQTTDVGGGHGVKYLDVV
                     AGYLHHLKI"
BASE COUNT          308 a          683 c          716 g          348 t
ORIGIN      
        1 gagagggagg gcgaggccgc gcagcaccag cccctgctgg tgctcgacgt ctgacgggcc
       61 gtaccgctgc acgtgctcgc gcgcgggcaa ccgtgactca gcgcgccggc ccgacgaggc
      121 cgtcgaagca ggtcgagatc agcatgtcgg caatctgcgc atcgctgaaa ttggcgccga
      181 ccttcaggag gctcagcacc gggtcgcagg cccgggcgaa gagcgtgtag agcacgacct
      241 cgggaggcag cttcgaattc agctcgccgg ccttctgcgc agccgtgatc caggcgccga
      301 gccggtcgct gaggcgcatc aggcggtcca ggtaggcctt gttggtcatg agcgcggtgc
      361 gcagcgccga attctgcgcc ggaagagaca gcatctcgcc cgcgagctgc tgctccagcg
      421 tccagcgggt catcgccttg aggcgatcga cctcgcccgt cgggccggcg ccttcgagcc
      481 gctcgacttc ctcgagcgcg cggtccaatg cccggatcat ggccgctgcg gcaagttctt
      541 ccttcgaggt gaagtgcttg tagaggctcg ccttcgcgat gcccacgtcg gcggcgactt
      601 cgtccatcgt catcgtgtcg aagccctttt ccgccaggag ccggttgacc gacacgacga
      661 tggcctcctc gcgcgagcgc agcatctttt cgcgaaaggt gggccgtggc atggtcccat
      721 tatgaggcgc gcggtgtccg agtgaacgcc gtggtcacag cgtgaccggg cggtcgggcg
      781 agccttttca gagccgggag cgtcgcgcca ggcggcggtg ccaatccgaa acaggcgcag
      841 taccggcctc gctcggggcc gcggtcggct cgaagtcgac cacggtgatc gaatcgaggc
      901 cgaaggccgt tcccatgtcc gcgggctcct tgcccgcacg gcgccgcagg cgccaggcct
      961 tgagcgccgt gaaccaggaa tcgggaagca gtttcatcgc gggggccaga atcgccggaa
     1021 ggagcttgac agtgtgaacc ttctcgcacg caacagcgcg ccgaaaacgg gcctgatcgg
     1081 gcagcaattc cggattgcca ccgcgcgtgg cactcgcgcc tacggcgccg cgacgaactt
     1141 gttgccggcg cccttgtagc gttcgacggc acgcttgagg tcgcggtatt cctcgcacga
     1201 gaagcggcaa gccttgtcga gtgcggcgag gcgcgcctcg gctttcggga ggtcgcccgt
     1261 catcagatac agctcgcccg agtactcgag cgctccgcgg tgtttcgggt cgatgcgcag
     1321 cgcctcgtcg tagaactttt ccgccgccgc gtagtcgggc gtgccctgct tgcgcatgct
     1381 gtagcccatg aggttgttcc agtcggcgct gccggtgtcg ttgacgcgct tcaattcgtc
     1441 gatcgcggcg ggccagttct tctcggcgat tcgcgcgcgg gccgcggtga gcttgtcggg
     1501 agtcgacggg ttcgccgtgt cggcggccca ggcctgagcc gcgccgagga gcaacacggc
     1561 gacgacgagt aggcggtgga agagggtgtg catgcggcgc tccttcggat gcggggtgga
     1621 aggggcgcca ttttccgctc agggcggcgc cgcctgcaag ctcggtccgc aagcgcagcc
     1681 cttgcgtaga atcgcgcccc cgccgccgct cgcccgtcac gcatgtactg cgccatcgat
     1741 ttcggaacct cgaactcggc cgtcgccatc cccgatggtg ccggcgcgat gcacctcgtc
     1801 gagctggagg ccggtttcac gaccatgccg accgcggtct cctacagcgt cgagggcagt
     1861 gaggccgcgg ggccgccacg cgcgttcggc cgtgccgcgg tcgcggtcta tgtcgacggc
     1921 gtcgacggcc gcttgatgcg ttcgatgaag agcatcctcg gcagcagcct gatcgaccag
     1981 accaccgatg tcggcggtgg ccacggcgtg aagtacctcg acgtcgtcgc cggctacctg
     2041 caccacctca agatc
//
LOCUS       DASVHM010000671         3868 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_551629, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000671 DASVHM010000000
VERSION     DASVHM010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3868
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551629"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..381)
                     /locus_tag="VF308_12425"
     CDS             complement(<1..381)
                     /locus_tag="VF308_12425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7437508.1"
                     /translation="MLLSVANLRVAFRLGTEHGEVQRVEAVGRATSGVAFEVPENTTV
                     ALVGESGSGKSVTAMSIINLLPENAERSGAITFEGRDLLAASQTDLRKLRGRAIACVF
                     QDPMTSLNPVFSVGRQICEPLVQHL"
     gene            complement(383..1438)
                     /locus_tag="VF308_12430"
     CDS             complement(383..1438)
                     /locus_tag="VF308_12430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437509.1"
                     /translation="MSAVLDAPGLAPRFAARSEGVWAAAWRRFRGDRVGIVSLAIVAA
                     FGMLIVLAALGLVASDWQVEQAVPNAPPTFLGAAPKQALRAIGGPSGPPVDLSDIDPL
                     APRYKEWAERAAQLQTTETKKADTLAFGADRLGRDVLAKAVKGAQISVFVGVLAAVVA
                     TLIGTVLGACAGFFGGKAGDLLEWLYNVFTAIPGILLIFAFAAVAGRGVQSVVVILGL
                     TGWTGVYRLVRAEFLKHSVRDYVRAAEAVGASPSSRIFRHILPNVSHVILVQLSILVV
                     GFIKAEVILSYLGLGVGVDQVSWGTMLSEAQSELILGYWWQLVAATAFMAVFVTAFSL
                     MTDALRDALDPKLRGLE"
     gene            complement(1435..2373)
                     /locus_tag="VF308_12435"
     CDS             complement(1435..2373)
                     /locus_tag="VF308_12435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000881920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437510.1"
                     /translation="MAAYLLRRVWQMIPTLIGVVLLVFFLFKYFGGDPAEILAGLSAT
                     PEQVQAIREQLGLNQPWWVQLGLFAKQIVTFDWGRSWATNESVAHLFATRLPATLTVM
                     TPILVLDSLLAIPFAMLVAYVRGSLTDRSIMVVSTVALSISFLVYVIVGQYFFAFRLG
                     WFPVQGWSDHVLTNLAVYVPLPVLLAVMVGIAPQTRLYRTFFLDEIGHDYVRTARAKG
                     LTESRVLLTHVMRNAMIPILTNIAIALPGIFVGSFLIEVFFSIPGLGREVLLAVNRSD
                     YPVIQAVTIYLAVITMLVNLGTDVLYKLVDPRVVLK"
     gene            2584..>3868
                     /locus_tag="VF308_12440"
     CDS             2584..>3868
                     /locus_tag="VF308_12440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437511.1"
                     /translation="MKSFSRATWFGALALLLLAPLQGAGADGAPAPAPHVLRYAFPAA
                     ETGFDPTQLSDLYSRTVTTHVFSALFHYDYLARPFKIVPDTAAAMPEVSDDFKTFTIR
                     LKPGIYFADDPAFKGRKRELVAQDYVYSFKRFFDPANKAQSYPGLKEEGMVGLDALRE
                     AALEAKAPFDYDKEVEGLRALDRYTLQFKLEKPRPRFVYTIADGSLFGALAREVVEFY
                     GDKIMEHPVGTGPFRLAQWRRSSLIVLERNPAYRDQVYNAQPNADDAEGQALVQRFKG
                     RRLPMLDRVEISIIEESQPRWLAFLNSQFDVIAVPLEFANVAAPNGKLAPNLAKRGIG
                     IERTLGADRTFFYFNMEDPVVGGYTPEKVALRRAISLATDVEREIRVARRGQAIAAQS
                     IVAPNTYAYSPDYHSINSEYSIAKAKALLDLYGYVD"
BASE COUNT          711 a         1267 c         1317 g          573 t
ORIGIN      
        1 caggtgctgg acgagcggtt cgcagatctg ccgtccgacc gagaagaccg gattgagcga
       61 ggtcatcggg tcctggaaca cgcaggcgat cgcgcggccg cggagcttgc gcaagtcggt
      121 ctgcgaggcc gcgagcaggt cgcgcccctc gaaggtgatc gcgccggagc gctcggcatt
      181 ttcgggcagc aggttgatga tcgacatcgc cgtcacgctc ttgcccgagc ccgactcgcc
      241 gaccagcgcc acggtcgtgt tctcgggcac ctcgaaggcg actccggaag tggcgcggcc
      301 gaccgcctcg acgcgctgga cctcgccgtg ttcggtgccg agccgaaacg cgacgcgcag
      361 gttcgcgacg ctcagcagca tgtcactcca ggccccgcag cttcgggtcg agcgcgtcgc
      421 gcagcgcgtc ggtcatcagc gagaacgcgg tgacgaagac ggccatgaac gcggtcgcgg
      481 cgacgagctg ccaccagtag ccgaggatca attcgctctg cgcctccgag agcatcgtgc
      541 cccacgacac ctggtcgaca ccgacaccga ggccgaggta agacaggatc acttcggcct
      601 tgatgaagcc gacgacgagg atcgagagct ggaccaggat cacgtggctg acgttgggca
      661 ggatgtggcg gaagatccgc gaactcgggc tcgcgccgac cgcctctgcg gcgcgtacgt
      721 agtcgcgcac cgaatgcttc aggaattcgg cgcgcacgag gcgatagacg ccggtccagc
      781 cggtcaggcc gagaatcacc acgacggatt gcacgccgcg cccggcgacc gccgcgaacg
      841 cgaagatcag caggatgccc gggatcgcgg tgaacacgtt gtagagccac tcgagaagat
      901 cgccggcctt gccgccgaaa aagccggcgc aggcgccgag caccgtgccg attaaggtcg
      961 cgacgacggc tgcgagaacg ccgacgaaga ccgagatctg ggcgcctttg accgccttgg
     1021 cgagcacgtc gcggccgagg cggtccgcgc cgaaggcaag cgtgtccgcc ttcttcgttt
     1081 ccgtggtctg caactgcgcg gcgcgttcgg cccattcctt gtagcgcggc gccagcgggt
     1141 cgatgtcgct caggtccacg ggcggtccgc tcgggccgcc gatcgcgcgc agggcctgtt
     1201 tcggcgccgc tccgaggaag gtcggcggcg cgttcggaac agcctgttcg acctgccagt
     1261 cggatgcgac caagccgagc gcggcgagca cgatcagcat cccgaaggcg gcgacgatcg
     1321 cgagcgagac aatgccgacg cggtcgccgc gaaaacgtcg ccaggctgcg gcccagacgc
     1381 cttcggagcg cgcagcgaag cgcggggcga ggccgggggc gtcgagcacc gcgctcattt
     1441 cagcaccacg cgcggatcga ccagcttgta aaggacgtcg gtgccgaggt tgacgagcat
     1501 cgtgatgacc gccaggtaga tcgtgaccgc ctgaatgacc gggtagtcgc tgcggttcac
     1561 cgcgagcagg acctcgcggc cgaggcccgg aatcgagaag aacacctcga tcaggaacga
     1621 gccgacgaag atgccgggca gtgcgatcgc gatgttggtg aggatcggaa tcatggcgtt
     1681 gcgcatcacg tgggtcagca gcacgcgcga ttcggtgagg cctttggcgc gcgcggtgcg
     1741 cacgtagtcg tggccgattt catcgaggaa gaacgtgcgg tagagccgcg tctgcggcgc
     1801 gatgccgacc atcaccgcga gcagcaccgg caagggcaca tagaccgcga ggttggtcag
     1861 cacgtggtcg ctccagccct gcaccggaaa ccagccgagc cgaaacgcga agaagtactg
     1921 gccgacgatc acatagacca gaaacgagat cgacagcgcc accgtgctca cgaccatgat
     1981 cgagcggtcg gtgagcgagc cgcgcacata ggcgaccagc atcgcgaacg ggatcgcgag
     2041 cagcgagtcg aggacgagaa tcggcgtcat cacggtcagc gtcgccggca gccgcgtcgc
     2101 gaagaggtgg gcgaccgatt cgttcgtggc ccagctgcgc ccccagtcga acgtgacgat
     2161 ctgcttggcg aagaggccga gctgaaccca ccacggctgg ttcagtccga gctgttcacg
     2221 gatcgcctgg acctgctcgg gcgtggcgct cagtccggcg agtatttcgg ccggatcgcc
     2281 accgaaatac ttgaacagga agaacaccag cagcacgacg ccgatgaggg tcggaatcat
     2341 ctgccagacg cgccgtaaca gataggccgc catgcgggtc gcgtctcctg ggaacaaggg
     2401 aggtgtcgcg gcgccgcagg acggcgggcc ccgcgtcacc gagcgccgag tctagggcac
     2461 cgggtcggcc ttgcggtctg gggaatgttc cgatgcccgc gtcccctgcg cgcaccggtg
     2521 ggtgtgcgag ctgccgtata agcttcgacc tcgacacgtg aagcaagagc gaggcggcgc
     2581 gcgatgaaga gcttttcgag agcgacgtgg ttcggggccc tggccctgtt gctgctcgcg
     2641 cccctgcaag gggccggcgc ggatggcgcg ccggcgcccg cgccccacgt gctgcgctac
     2701 gcctttccgg ctgccgagac gggtttcgat ccgacccagc tgagcgacct ctactcgcgc
     2761 accgtgacga cccatgtttt cagcgccctg ttccactacg actacctggc ccggccgttc
     2821 aagatcgtgc ccgataccgc tgccgcgatg cccgaggtgt cggacgattt caagaccttc
     2881 acgattcgcc tcaagcccgg catctacttt gcagacgacc cggcgttcaa gggccgcaaa
     2941 cgcgagctgg tggcgcagga ctacgtctac agcttcaagc gcttcttcga ccccgccaac
     3001 aaggcgcagt cgtacccggg cctgaaggaa gaagggatgg tcgggctcga tgcgttgcgc
     3061 gaggccgcgc ttgaggccaa ggcgccgttc gactacgaca aggaggtcga ggggctgcgc
     3121 gcgctcgatc gctacacgct gcagttcaag ctcgaaaagc cgcggccgcg cttcgtgtac
     3181 acgatcgccg acggcagcct tttcggcgcg ctggcgcgcg aggtggtcga gttctacggc
     3241 gacaagatca tggagcaccc ggtcggcacc ggaccgttcc ggctcgccca gtggcgccgc
     3301 agttcgctga tcgtgctgga gcgcaatccc gcgtatcggg accaggtcta taacgcgcag
     3361 cccaacgccg acgatgccga gggccaggcc ctggtgcagc gcttcaaggg ccggcgcctg
     3421 ccgatgctcg accgggtcga gatcagcatc atcgaagaga gccagccgcg ctggctcgcg
     3481 ttcctgaatt cgcagttcga cgtgatcgcg gtgccgctcg agttcgccaa cgtcgccgcg
     3541 ccgaacggca agctcgcccc gaaccttgcc aagcgcggca tcggcatcga gcgcaccctg
     3601 ggcgccgacc ggacattctt ctacttcaac atggaagacc cggtggtcgg cggctacacg
     3661 ccggagaagg tggcgctgcg ccgggcgatc agcctggcga ccgacgtcga acgcgagatt
     3721 cgcgtcgctc ggcgcggcca ggcgattgcc gcgcagtcga tcgtcgcgcc caacacctat
     3781 gcctattcac ccgactacca cagcatcaac agtgaataca gcatcgccaa ggcgaaggca
     3841 ctgctcgacc tctatggtta tgtggacc
//
LOCUS       DASVHM010000672         1573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_408540, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000672 DASVHM010000000
VERSION     DASVHM010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408540"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(300..1067)
                     /gene="cofE"
                     /locus_tag="VF308_12445"
     CDS             complement(300..1067)
                     /gene="cofE"
                     /locus_tag="VF308_12445"
                     /EC_number="6.3.2.31"
                     /inference="COORDINATES: protein motif:HMM:TIGR01916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043773 - coenzyme F420-0 gamma-glutamyl
                     ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HEX7437512.1"
                     /translation="MTIELTAVAGIPEVKAGDDLAAVIGDAIASGTADNEPPRDGDII
                     AVAQKIVSKAEGRTTSLSAIVPGAEAAELARRTGKDPRLIEAILGESAKVLRASHGVL
                     IVETNHGFVCANAGIDRSNVPGDDALLLLPSDPDASARKLRRALHERWAAEIGVIVTD
                     SFGRAWRVGQQDVTIGCAGVRPLVDLRGGGDRNGRELTASIDAVADELAAAANLARAK
                     CSGEPVVLIRGRAELVTPEDGPGAVPLLRERTLDLFR"
     gene            complement(1064..>1573)
                     /locus_tag="VF308_12450"
     CDS             complement(1064..>1573)
                     /locus_tag="VF308_12450"
                     /inference="COORDINATES: protein motif:HMM:NF014085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HEX7437513.1"
                     /translation="IGELAGDRASAMLPDTPRTGHSDAARAGVAWALEQGCDSVLMVP
                     GDCPLIDGEQIEGLIDRCEREAIAVAVVPDRMGSGTNALLLTPPDAIAPAFGPDSRER
                     HLALGRDAGRNTAAIEVPSLALDLDTADDLLELAERLAAGGHRAFNTEQAIASLLTDR
                     YRLPGGYAR"
BASE COUNT          222 a          542 c          547 g          262 t
ORIGIN      
        1 gtggtcatcc agagaccggt gatgccaggc tcgatcggca cgcgcggccg cgcgggacgc
       61 cgagttcagc atggttcggt tggtcaaaaa tcggttctct gttctgcctg gctgatgcaa
      121 gggtccggac acacgtactc agcgggaatg aaccctcctt ggcgcctgtt aggccgatga
      181 atatgtcagg acgcgacaat cattgcgcgc aggtcaccat atctctatac ataatactga
      241 tgattttcgt tacggtcaag tcaggccgct tagtacgcct cacgagcggt gcgggcggct
      301 taccgaaaga gatcgagcgt gcgctcgcgc agtagcggta cggcaccggg tccatcttct
      361 ggggttacca gttccgcgcg gccgcgtatc agcacgaccg gctcgcccga gcacttggcg
      421 cgcgccagat tcgccgccgc ggcgagctcg tcggcaaccg cgtcgatcga tgccgtcagc
      481 tcgcgcccgt tgcggtcgcc gccgccgcgc aggtcgacga gcggccgcac gccggcgcag
      541 ccgatcgtga cgtcctgctg accgacgcgc caggcgcgac cgaagctgtc ggtgacgatc
      601 acgccgatct cggcggccca gcgctcgtgc agcgcccggc gcagcttccg cgccgaagcg
      661 tccgggtcgc tgggcagcaa cagcaacgcg tcgtcgcccg gcacgttgga acggtcgatg
      721 ccggcgttgg cgcagacgaa gccatggttt gtctcgacga tcagcacgcc gtggctagcg
      781 cgcagcactt tggcgctctc gccgaggatc gcctcgatca gccgcgggtc cttgcccgtg
      841 cgacgcgcga gttcggcggc ctcggctccg ggcacgatcg ccgacaacga ggtcgtgcgg
      901 ccctcggcct tcgacacgat cttctgcgcc acggcgatga tgtcgccgtc gcgcggcggc
      961 tcattgtcgg ctgtgccgga cgcgatcgcg tcgccgatca ccgcggccag gtcgtcaccg
     1021 gctttcacct cggggatgcc ggcgacggcg gtcagttcga ttgtcaccgc gcgtagcccc
     1081 cgggcaagcg gtagcggtcg gtcagcagcg acgcgatcgc ctgctcggtg ttgaacgcgc
     1141 ggtggccgcc ggccgctagg cgctcggcca gttcgagcag atcgtcggcg gtgtcgaggt
     1201 cgagcgccaa cgacggcact tcgattgcgg cggtattgcg tccggcgtcg cgcccgagcg
     1261 ccaggtggcg ctcgcggctg tccgggccga aggccggtgc gatcgcgtcc ggcggcgtca
     1321 gcagcaacgc gttggtgccg ctgcccatgc ggtcgggcac cacggcgacc gcgatcgcct
     1381 cgcgctcgca gcggtcgatc aagccttcga tctgttcgcc gtcgatcagc gggcagtcgc
     1441 ccggcaccat cagcacgctg tcgcagcctt gctcgagcgc ccaggccacg ccggcgcggg
     1501 cggcgtcgct gtggccggtg cgcggtgtgt cgggcagcat cgcgctcgcg cggtcacccg
     1561 ccagctcgcc aat
//
LOCUS       DASVHM010000673         1727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_551902, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000673 DASVHM010000000
VERSION     DASVHM010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551902"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1727)
                     /locus_tag="VF308_12455"
     CDS             complement(<1..>1727)
                     /locus_tag="VF308_12455"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016726557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEX7437514.1"
                     /translation="ASLVRGSRYEAAVEVARQQVNAGAQIIDINFDDALLDGDAAMTT
                     FLRLIGSEPEIARVPVMVDSSRWSVLEAGLRCLQGKGIVNSLSLKEGEAKFLEQARLV
                     RRYGAATVVMAFDEQGQADSVERRAAILQRAFRLLVDQVGFAPEDIILDPNVFAVGTG
                     IEAHAEYGNAYVEAIRAAKLACPGALTSGGISNVSFSFRGNDAVREAIHAVFLERAIA
                     AGLDMGIVNAGQLPVVDDLDPVLRERVADLLWNRRPDATERLLEIADRAKGSAQAATP
                     DLSWREGSADARLSHALVHGIADFVEIDTEEARLLASKPLEVIEGPLMAGMSRVGDLF
                     AAGKMFLPQVVKSARVMKRAVAYLVPFLEAERATVAPRARGKILMATVKGDVHDIGKN
                     IVGVVLQCNEWDVVDLGVMVPCATIIEAARREKVDLVGLSGLITPSLDEMAFVASEFE
                     REGLDIPLLVGGATTSKAHTALRIAPAYSGPVVHVLDASRAVPVASALRDPARRNAFA
                     AEVSAEFARIRTEREGEHEGPLTPIADARAAALHLDLGIAVPAPSFLGTRAFDSWPLA
                     DLRTRIDWTP"
BASE COUNT          281 a          601 c          581 g          264 t
ORIGIN      
        1 ggcgtccagt cgatccgggt gcggagatcg gcgagtggcc acgaatcgaa ggcgcgcgtg
       61 ccgaggaatg acggcgccgg cacggcgatg ccgaggtcga ggtgcagcgc cgcggcgcgg
      121 gcatcagcga tcggcgtcag cggtccttcg tgctcgcctt cgcgctcggt gcggatgcgg
      181 gcgaactcgg ccgacacttc ggccgcaaag gcgttgcgcc gcgccgggtc gcgcagggcg
      241 ctggccactg gcacggcgcg cgacgcgtcg aggacgtgca ccacgggtcc cgagtaggcc
      301 ggcgcgatgc gcagcgcggt gtgcgccttc gacgtggtcg ctccgccgac gagcaacggg
      361 atgtcgagcc cctcacgctc gaactcactc gccacaaacg ccatctcgtc gagtgagggt
      421 gtgatcaggc ccgacaatcc gaccaggtcg accttctcac gacgcgccgc ttcgatgatc
      481 gtggcgcagg gcaccatcac gccgagatcg accacgtccc actcgttgca ctggagcacc
      541 acaccgacaa tgttcttgcc gatgtcgtgc acgtcgccct tgacggtggc catcaggatc
      601 ttgcctcgtg ccctgggcgc caccgttgcg cgctcggcct cgaggaacgg gacgagatac
      661 gccaccgcgc gcttcatcac ccgggcgctc ttcaccacct gcggcaggaa catcttgccc
      721 gccgcaaaca gatcgccgac gcgactcatc ccggccatca ggggaccttc gatcacctcg
      781 agcggtttgc tcgcgagcag tcgcgcctct tcggtgtcga tctccacgaa gtcggcgatg
      841 ccgtgcacca gggcatgcga gagccgggca tccgcgctgc cttcgcgcca cgagaggtcg
      901 ggcgtcgcgg cctgcgcgct gcccttggcg cgatcggcga tttcgagcag ccgctcggtc
      961 gcgtcggggc gacggttcca gagcaggtcg gcgacccgtt cgcgcagaac gggatcgaga
     1021 tcatcgacca ccggcagctg accggcgttg acgatgccca tgtcgagccc ggccgcgatc
     1081 gcgcgctcga ggaagacggc atgaatcgcc tcgcgcaccg cgtcattgcc gcggaaggag
     1141 aacgagacat tgctgatgcc gccgctggtg agtgcgccgg ggcaggcgag cttggcggcg
     1201 cggatcgcct cgacataggc attgccatac tcggcatgcg cctcgatgcc ggtgccgacg
     1261 gcaaagacat tgggatcgag gatgatgtct tccggtgcga agccgacctg atcgacgagc
     1321 agccggaacg cgcgctgcag gatcgcggca cggcgctcga cgctgtcggc ctggccctgt
     1381 tcgtcgaagg ccatcacgac ggtcgcagcg ccataccggc gcaccagccg ggcctgttcg
     1441 aggaacttcg cctcgccttc cttgagcgac agcgagttga cgatcccctt gccctgcagg
     1501 cagcggagcc cggcctcaag cacgctccag cgtgacgaat cgaccatcac ggggacccgc
     1561 gcgatctccg gctccgagcc gatcagccgc aggaaggtcg tcatcgcggc gtcaccatcc
     1621 agcagcgcgt cgtcaaaatt gatgtcgatg atctgcgccc cggcgttgac ctgctgccgg
     1681 gccacttcga ccgcggcctc gtagcgtgac ccccggacca gcgacgc
//
LOCUS       DASVHM010000674         7446 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_46253, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000674 DASVHM010000000
VERSION     DASVHM010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7446
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46253"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..729
                     /gene="serS"
                     /locus_tag="VF308_12460"
     CDS             <1..729
                     /gene="serS"
                     /locus_tag="VF308_12460"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEX7437515.1"
                     /translation="YTPYIVNREVLEGTGQLPKFRNDMFGVFRGADADEGDAAGGRAQ
                     YLISTSEISLTNSVRGELLAEAALPIRLTAHSPCFRSEAGSAGRDTRGMIRQHQFDKV
                     EMVQITHPSKSYAALDEMVGHAEAILRKLELPYRVVLLATGDMGFGAAKTFDLEVWVP
                     AQNTYREISSCSNCEAFQARRMQTRFKSAQGRNEFVHTLNGSGLAVGRTLVAVLENFQ
                     NEDGSVTVPAALRPYLGGLAELRA"
     gene            726..1559
                     /locus_tag="VF308_12465"
     CDS             726..1559
                     /locus_tag="VF308_12465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437516.1"
                     /translation="MSVAAAPTIAARARQLLAALDGASTLPTFTGADPSFDLAQAFAV
                     ADEIRRLRLGRGEVPLGYKIGFTNRGIWARYGVFAPIWGPVWDTTVERVDSAETTVSL
                     APFVEPRLEPEIMFGFARAPAAGMSLAELAGCIEWIAHGFEIVHTRFAGWRFAAADTV
                     ADFALHGRLFVGPRVPIDRFSDAGDVAAQLAALRVTLSCDGREVEEGSADIVLDGPLH
                     ALRLWVDAMAARPERWPIAAGDIVTTGTITDAAPLVPGHRWQTRLSDPRFAGMTLHTT
                     A"
     gene            1625..1715
                     /locus_tag="VF308_12470"
     tRNA            1625..1715
                     /locus_tag="VF308_12470"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1659..1661,aa:Ser,seq:cga)
     gene            complement(1764..2549)
                     /locus_tag="VF308_12475"
     CDS             complement(1764..2549)
                     /locus_tag="VF308_12475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437517.1"
                     /translation="MAGRARDHVDESIARQPPMTAADAILGHLKVVDAERQRRVALPE
                     LDARVHSLKEYQQRRFSQTYADLLLSTRYGAASRYFLDELYGAKDFTRRDRQFARVAP
                     AIVRLFPSELAQTIVTLAELHALSETLDTAMGMQLTIARIGAVDYIRAWQGVGCAPDR
                     ERQIALTLGIAAQLDRLTRLPLLRNSLRLMRGPSRAAGLSELQRVLETGFDTFRAMKG
                     AQEFIALIGSRERDFAAVLFAAQPNGADADSSMQRALASLPSP"
     gene            complement(2492..3745)
                     /locus_tag="VF308_12480"
     CDS             complement(2492..3745)
                     /locus_tag="VF308_12480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007854357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7437518.1"
                     /translation="MGPRVRLRGSDLRGAARLATNATSGLTDLVEAMHERIARTAAMT
                     APAADGRTGGITGIVYKTIRGVTRVVGGSIDSLLGLLAPALPAEDHSPEREAIVAALN
                     GVLGDYLAATANPLATSMALRRDGRRLDLEAAALKARMPAAGGRLLVLLHGLCMSDLQ
                     WMRGDHDHGAALARDLGYTPVYLHYNSGLHISINGHALANLLERLIDQWPAPLDRFVL
                     LGHSMGGLLARSALHYGAEAGHRWPSRLDDLVFLATPHQGAPLERAGNWVDILLGATP
                     YAAPLARLGKLRSAGITDLRHGCLVDEDWVGRDRFAPGPAPRHPLPLPEAVRCYAIAA
                     SLGQGAGDLKDRLLGDGLVPLASALGRHADPDRSLRIAEDRQWIGYGMNHLDVLGDAG
                     VYARLGQWLAAPGTTSTRASLASPP"
     gene            complement(3815..4540)
                     /locus_tag="VF308_12485"
     CDS             complement(3815..4540)
                     /locus_tag="VF308_12485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437519.1"
                     /translation="MATQATPSKKATAVRRRAAGVARPPARRKTTATAKSKPVRKAPA
                     LGKAGTAVRAGVVDRLKALTALESEIARLSRGAVAEALAVAGITAREVTAILRDVVVG
                     AIEAAGRAGSELTVSIKGVAKGAIAGVHDARGNLTQAAGTIVKTAIAQASRIGAEAGP
                     VARSALDGIREGATEAGANAVAVVSASVRSALAAASEINALAAEAVRQVVVGSAEGIA
                     EVVKSHRATPKPRRAGAKRLRSA"
     gene            4753..5424
                     /locus_tag="VF308_12490"
     CDS             4753..5424
                     /locus_tag="VF308_12490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpW family outer membrane protein"
                     /protein_id="HEX7437520.1"
                     /translation="MKLKTSIFTAAIAAALAATAVQAQDNVVKLGATRYTTHSSSNGL
                     TATPPVFPAGADAETGDATTLLLVIERSLTPNLGIELALGVPPRIKAKGTGAAAALGD
                     ELLSTKNVSPTLLLNYYFGDPANALRPYVGAGINYTKFTAIRSSLPTSKLDMSDSWGW
                     ALQAGLSYAVRKDWGLFASVARLDVKSDVDAIATIPGVPVPVEVRTTIDLKPITYSLG
                     LWYRF"
     gene            complement(5449..7176)
                     /locus_tag="VF308_12495"
     CDS             complement(5449..7176)
                     /locus_tag="VF308_12495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006387718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437521.1"
                     /translation="MDKIWLKNYPPGIPAVVDLNEFSSLKDVLEHSCRRFGALPAYSN
                     MGSSISYAQLDQASRDFAAYLQQTVGLKRGARVAIMMPNLLQYPVALFGVLRAGLVVV
                     NVNPQYTPSELEHQLKDSGAAAIVVLENFAHTVQEVLDRNPGLTLTVVTTEVGDMLPV
                     LKEVLTNVVVKYVKKMVPGWKIAGATEFNAALRAGHGLRLDEVPLTHGDTAFLQYTGG
                     TTGVAKGTVLSHGNLVANLQQLGAWIAHDLDEGKEVFVCPLPLYHVFALTSSLMFMKI
                     GAHAILVTDPRNMEAFLHDLRKYPFTAMIGVNTLYRGLLDAPGFDDVDMRSFKLASAG
                     GMAVQRVVAERWAKATGVPLIEGYGLTETSPVVISNPLDIEQWTGTIGVPIPSTEAAI
                     LNDDGGEVVLGEVGEICVRGPQVMVGYWNRPDETERAFTADGWFRTGDLGTMDERGYF
                     RITDRKKDMIIVSGFKVFPNQIEDVVALHPGVAEVGAIGVADERSGEAVKIVVVRKDP
                     ALTEQALLEHCRQHLTGYKIPKIVEFRTEPLPKSNLGKILRRQLRDATVAPPTPSPGA
                     RSSPGVPAA"
BASE COUNT         1111 a         2624 c         2550 g         1161 t
ORIGIN      
        1 tacacgccgt acatcgtcaa ccgcgaggtg ctcgagggca ccggccagct gcccaagttc
       61 aggaacgaca tgttcggggt cttccgcggc gccgacgccg acgaaggcga cgccgccggc
      121 gggcgggcgc agtacctgat ctcgacctcc gagatctcgc tcaccaacag cgtccgcggc
      181 gagctgctcg ccgaggcggc cctgccgatc cgcctgaccg cgcactcgcc gtgttttcgc
      241 tcggaagcag gaagcgccgg ccgtgacacg cgcggcatga tccgccagca ccagttcgac
      301 aaggtcgaga tggtccagat cacgcacccg tcgaagagct acgcggcgct cgacgagatg
      361 gtgggccacg ccgaggcgat cctgcggaag ctcgagctgc cgtaccgcgt cgtcctgctc
      421 gcgaccggcg acatgggctt cggcgccgcc aagaccttcg acctcgaggt gtgggtgccc
      481 gcgcagaaca cctatcgcga gatcagctcg tgctcgaact gcgaggcgtt ccaggcgcga
      541 cgcatgcaga cccggttcaa gagcgcacag ggcaggaacg aattcgtcca cacgctcaac
      601 ggctcgggcc tcgcggtcgg gcgaacgctt gtcgcggtgc tcgagaactt ccagaacgaa
      661 gacggctcgg tgaccgtgcc ggcggcgctt cgtccctacc tcggcggcct cgccgagctg
      721 cgcgcgtgag cgtcgccgcg gcgccgacca tcgccgcccg cgcccggcag ctcctcgccg
      781 cgctcgacgg cgcgtcgacg ctgccgacct tcaccggcgc tgatccgtcg ttcgacctgg
      841 cgcaggcgtt cgccgtcgcc gacgagatca ggcgcctgcg tctcggccgc ggcgaggtgc
      901 cgctcggcta caagatcggc ttcaccaatc gcggcatctg ggcccgctac ggcgtcttcg
      961 cgccgatctg ggggccggtc tgggacacga ccgtcgagcg cgtcgacagc gccgagacga
     1021 ccgtctcgct ggcgcccttc gtcgaacctc ggctcgagcc cgagatcatg ttcggcttcg
     1081 cgcgcgcacc ggccgccggc atgagcctgg ccgagctcgc cggctgcatc gagtggatcg
     1141 cgcacggctt cgagatcgtc cacacccgct ttgccggctg gcgcttcgcc gccgccgaca
     1201 ccgtcgccga cttcgccctg cacggccgcc tcttcgtcgg cccgcgcgtg ccgatcgatc
     1261 gcttcagcga cgccggcgac gtcgcggcgc agctcgccgc gttgcgcgtg acgctgtcgt
     1321 gcgacggccg cgaggtcgag gaaggcagcg ccgacatcgt cctcgacggg ccgctgcacg
     1381 cgctgcgcct ctgggtcgac gcgatggcgg cgcgccccga gcgctggccg atcgccgccg
     1441 gcgacatcgt cacgaccgga acgatcaccg atgcggcgcc gctcgtgccc ggacaccgct
     1501 ggcagacgcg cctgagcgac ccgcgcttcg ccggcatgac gctgcacacg accgcatgag
     1561 cgggccgaag ccgcgcaggc cctagaatcc cgccctcggt agcgacccgc cgaagcaccc
     1621 gaccggagag gtggcagagt ggtcgaatgc gccagactcg aaatctggtt tacggtttca
     1681 ccgtaacgtg ggttcgaatc ccaccctctc caccagtcca agcgtgcgtc gaaggcagcg
     1741 gctcgtcgtc cgaaggcgat ccgtcacggc gaaggcaggc tggccagggc acgttgcatc
     1801 gaggaatcgg cgtcggcgcc attcggctgt gccgcgaaga gcacggcggc gaagtcacgc
     1861 tcgcgcgagc cgatgagcgc gatgaactct tgcgcgcctt tcatcgcccg gaaggtgtcg
     1921 aacccggtct ccagcacgcg ctgcagctcg gaaagacccg cggcgcggga cggcccgcgc
     1981 atcaagcgca ggctgttgcg cagcagcggc aggcgcgtca gccgatcgag ctgtgcggcg
     2041 atgccgagcg tcagcgcgat ctggcgttcc cggtcgggtg cgcagccgac gccttgccac
     2101 gcgcggatgt agtcgacggc gccgatccgc gcgatcgtga gctgcatgcc catggccgtg
     2161 tccagggtct cggacaacgc atgcagctcg gccagggtca cgatcgtctg ggcgagctcg
     2221 ctcgggaaca atcgtacgat ggccggcgcg acgcgagcga actggcggtc gcgacgggtg
     2281 aaatccttcg cgccgtacag ctcgtcgagg aagtagcgcg aggcggctcc gtagcgcgtg
     2341 ctgagcagca ggtcggcgta cgtctgcgag aagcgtcgct gctgatattc cttcagcgag
     2401 tggaccctgg cgtccagttc cggcagcgcc actcgccgct gccgctcggc gtcgacgacc
     2461 ttcaggtgcc ctaggatcgc gtcggcggct gtcatggggg gctggcgagc gatgctctcg
     2521 tcgacgtggt cccgggcgcg gccagccact gcccgagccg cgcatacacg ccggcatcgc
     2581 cgagcacgtc gagatggttc atgccgtagc cgatccattg ccggtcctcg gcgattcgca
     2641 gcgaccggtc cggatcggcg tgtcggccca gggcgctggc cagcggcacc aggccgtcgc
     2701 cgagcaggcg atccttcaga tcgccggcgc cctggcccag gctcgccgcg atcgcgtagc
     2761 agcgcaccgc ctccgggagc ggaaggggat ggcgcggggc cgggccgggc gcgaagcgat
     2821 cgcgtccgac ccagtcctcg tcgaccagac agccgtggcg caggtcggtg atgccggcgc
     2881 tgcgcagctt gccgaggcgt gcgagaggcg ccgcataggg cgtcgccccg aggaggatgt
     2941 cgacccagtt gccggcgcgc tcaagcggtg cgccctgatg cggcgtcgcg aggaacacga
     3001 ggtcgtccaa ccgcgacggc cagcggtggc cggcctcggc tccgtagtgg agcgcgctgc
     3061 gcgccagcag gccgcccatg ctgtgtccga gcagcacgaa tcgatccagc ggggcgggcc
     3121 actggtcgat cagacgctcg agcaggttcg cgagcgcatg cccgttgatc gagatgtgca
     3181 gaccgctgtt gtagtgcagg tagaccggcg tgtagccgag gtcgcgagcg agcgcagcgc
     3241 cgtgatcgtg gtccccgcgc atccattgaa ggtcgctcat gcacaggccg tgcagcagca
     3301 ccagcaggcg gcctccggcg gccggcatgc gcgccttcag cgccgcggcc tcgagatcga
     3361 gccgacgccc gtcgcggcgc aacgccatgc tcgtggcgag cgggttggcg gtggccgcga
     3421 gatagtcgcc gagcacgccg ttcaaggccg cgacgatcgc ctcgcgctcc gggctgtggt
     3481 cttccgcagg caatgccgga gcgaggagcc ccaacaggga atcgatgctg ccgccgacaa
     3541 cgcgggtgac gccgcgaatc gtcttgtaga cgatgccggt gatgccgccc gtgcggccgt
     3601 ccgcggccgg cgcggtcatg gccgcggtgc gggcgatgcg ttcgtgcatc gcctcgacca
     3661 ggtcggtcag gcccgaggtc gcattggtcg cgaggcgggc agcgccgcgc aggtccgaac
     3721 cgcggaggcg aacgcgtggg cccatggctc gcgcgcgtcg ctcgggatca tgagcgacgc
     3781 gcaaggcgct ggcggttgcg cagcccgttc ccgctcacgc ggaccgcagg cgcttggctc
     3841 ccgcacgccg cggcttcggt gtcgcgcggt gcgacttgac gacctcggcg atgccttcgg
     3901 ccgatccgac caccacctgg cgcaccgcct cggccgccag ggcgttgatc tcgctcgctg
     3961 ccgccaacgc gctcctgacg ctcgcgctga cgacggcgac ggcgttcgcg ccggcttcgg
     4021 tcgcgccctc gcggatgccg tccagcgcgc tacgcgccac cgggcccgct tcggcgccga
     4081 tcctgcttgc ctgcgcgatc gcggtcttca cgatcgttcc ggccgcctgg gtcagattgc
     4141 cgcgcgcgtc gtgcacgccg gcgatggcgc ccttggcgac gcccttgatg ctcaccgtca
     4201 actcgctgcc ggcccgcccc gcggcttcga tcgcgccgac gacgacatcg cgcaggatcg
     4261 ccgtcacttc cctcgcggtg atgccggcga ccgcgagcgc ttcggccacc gcgccccggc
     4321 tgagccgcgc gatctcgctc tcgagcgccg tgagcgcctt caggcggtcg acgaccccgg
     4381 cccggaccgc cgtccccgcc ttgccgagcg cgggagcctt tcggacgggc ttcgacttcg
     4441 ccgttgcagt cgtcttgcgc cgtgcgggcg ggcgagcgac tccggcagcg cggcgccgga
     4501 ctgctgtcgc tttcttggag ggggtcgctt gagttgccat ggctctttct cgctggttgg
     4561 gatgaacaac catacccagc ggtgcgggcc gtgtattgat gcagagcaac cgggcgcgat
     4621 tcgacctcgc acctcacgcc ggaccaccgt ggacggcgcc agtcgcgacc ttcaccgcct
     4681 ctgttgactg ccgtcaacac ctcgcgcgac ccaccggcgc aggatcgatc gcgatgtgcg
     4741 aagggaggag cgatgaaact caagacaagc atcttcacag cggcgatcgc cgctgccttg
     4801 gccgccacgg ccgtgcaggc gcaggacaac gtcgtcaagc tcggtgccac ccggtacacg
     4861 acccactcga gctcgaacgg gctcacggcc actccgccgg tatttcccgc cggcgcagat
     4921 gccgagaccg gtgacgcaac gaccctgctg ctggtcatcg agcgctcgct gacgccgaac
     4981 ctcggcatcg agctcgcgct cggcgtgccg ccgcgcatca aggccaaggg gaccggcgcg
     5041 gccgcggcgc tcggcgacga gctgctgtcg acgaagaacg tgtcgccgac cctgctgctg
     5101 aactactact tcggcgatcc ggccaacgcg ctgcggccgt acgtgggggc gggcatcaac
     5161 tacacgaaat tcaccgccat ccgctcgagc ctgccgacca gcaagctcga catgagcgat
     5221 tcctggggct gggcgctgca ggccggcctg agctacgccg tgcgcaagga ctggggcctg
     5281 ttcgcctcgg tcgctcgcct cgacgtcaag agcgatgtcg atgccatcgc cacgattccc
     5341 ggcgtgccgg tcccggtcga agtcaggacc accatcgacc tgaagccgat cacctattcg
     5401 ctcggcctct ggtatcggtt ctgaggcggc gcgcgggcgc cgcccgattc acgccgcggg
     5461 aacaccgggg ctcgatcggg cgcccgggga gggcgtcggc ggcgcgaccg tcgcgtcgcg
     5521 caactggcgc cgcagaatct tgccgaggtt cgacttcggc agcggctcgg tacggaactc
     5581 gacgatcttc gggatcttgt atccggtcag gtgctggcgg cagtgctcga gcagagcctg
     5641 ctcggtcagc gcgggatcct tgcggacgac gacgatcttg accgcctcgc ccgacctctc
     5701 gtccgccacg ccgatcgccc cgacctcggc gacgcccggg tgcaaggcca cgacatcctc
     5761 gatctggttc ggaaagacct tgaatccgga gacgatgatc atgtccttct tgcggtcggt
     5821 gatcctgaag tagccgcgct cgtccatggt gccaaggtcg ccggtcctga accagccgtc
     5881 ggcggtgaac gcgcgttcgg tctcgtcggg gcggttccag tagccaacca tgacctgcgg
     5941 cccgcgcacg cagatctcgc cgacctcgcc gagcacgacc tcgccgccgt cgtcgttcag
     6001 gatcgcggcc tcggtggagg ggatcggcac gccgatggtc ccggtccact gctcgatgtc
     6061 gagcggattc gagatcacga ccggcgaggt ttcggtgagg ccgtagccct cgatgagcgg
     6121 cacgccggtg gccttcgccc agcgttcggc gacgacgcgc tggacggcca tccccccggc
     6181 gctcgccagc ttgaagctgc gcatgtcgac gtcatcgaac ccgggcgcgt cgagcagccc
     6241 ccggtacagc gtgttgacgc cgatcatcgc ggtgaacggg tacttgcgaa ggtcgtggag
     6301 gaacgcctcc atgttgcgcg gatcggtgac gaggatcgcg tgcgcgccga tcttcatgaa
     6361 catcaggctc gaggtcagcg cgaagacgtg atagagcggc aacgggcaga cgaacacttc
     6421 cttgccctcg tcgaggtcgt gcgcgatcca tgcgccgagc tgttgcaggt tggcgacgag
     6481 gttgccgtgg ctgagcaccg tccccttggc gacgccggtc gtgccgccgg tgtactggag
     6541 gaaggccgtg tcgccgtgcg tcagaggcac ctcgtcgagc cgaagtccat ggccggcgcg
     6601 cagggccgca ttgaactcgg tggcgccggc gatcttccag cccggcacca tcttcttcac
     6661 gtacttgacg acgacgttgg tgaggacctc cttgagcacc ggcagcatgt ctcccacttc
     6721 cgtggtgacg accgtcagcg tcagccccgg attgcggtcg agcacctctt gcacggtgtg
     6781 ggcgaagttc tccagcacca cgatcgccgc cgcccccgaa tccttgagct gatgctcgag
     6841 ttccgagggt gtgtattgcg ggttgacgtt caccaccacc aggcccgccc tcaggacgcc
     6901 gaacagggcg accggatact gcagcaggtt gggcatcatg atcgcgaccc gggcgcccct
     6961 cttcaacccg accgtctgct gcagataggc cgcgaagtcc cggctcgcct gatcgagttg
     7021 cgcgtagctg atcgaagagc ccatgttgct gtaggccggc agcgcgccga agcgccgaca
     7081 gctgtgctcc agcacgtcct tcagcgagga gaactcgttc agatccacca cggccgggat
     7141 gcccggggga tagttcttca gccagatctt gtccactctc gtcactcctc gacagcgaag
     7201 atgcctgcac cagcggccgt ggtccgccag gagagcggca cggtcgacca agctccagta
     7261 gacgactcgg gcgcttcggg cgctttgagc ggcatcagat ccgggcgtgc tttttccttg
     7321 cgcttcgtca gtcccgcctt caggcgccga ctgtccaatg cgatcaggga tcaggcgtga
     7381 cgccgaggca cgccctgggc gtggtcgcca acctgatcct gggagtgccc gaatgacccc
     7441 aagttc
//
LOCUS       DASVHM010000675         1643 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_552155, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000675 DASVHM010000000
VERSION     DASVHM010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_552155"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..233
                     /locus_tag="VF308_12500"
     CDS             <1..233
                     /locus_tag="VF308_12500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="twin-arginine translocation pathway signal
                     protein"
                     /protein_id="HEX7437522.1"
                     /translation="QRALRRGRWKYLKVDGHEYLFDLPADERERANRAPREPARLDAM
                     RADWDAWNATMPPIPGDASVSLGYGMKDMPQR"
     gene            285..662
                     /locus_tag="VF308_12505"
     CDS             285..662
                     /locus_tag="VF308_12505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006222497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEX7437523.1"
                     /translation="MPASEEPRLDGAPVRRFRDPRILPKAETLGALRDRIDALDAQVV
                     ALLAERALCVRDAARFKRNAFEVTSPERQAWVFAHVRVLAAAQASEFASLPDVIEAAY
                     RVLVAGFIAAEGRFFAETEPIDS"
     gene            659..>1643
                     /locus_tag="VF308_12510"
     CDS             659..>1643
                     /locus_tag="VF308_12510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013541354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7437524.1"
                     /translation="MSIFRRAVLVCGLRGAAALALGCIGAAALAQGAAAGWPNRAIHI
                     VIPYAAGSSPDVFARIVADKIAPRLGQPVVVENRAGGGGNNGTGAVAKAAGDGYTFLV
                     STNGPLVYNTVLYKKLSYDPFAELRPVVMGGSQANVCAVRTDSGINSLAELVKAMRAN
                     PGKFNFASTGVGSLSHLGVELLKAKTDTFAVHIPYASSPLAILALLQGDVQFACVPAV
                     AVIPQVKAGKLRPLAVSTAQRSALTPDIPTMKEAGLPEIENMAWMAVMAPASTPTEIV
                     ERMNQEINAALALPDVREKLSTQFMEPMGGSAADLQKFMRRELTVMTPIIKR"
BASE COUNT          254 a          609 c          533 g          247 t
ORIGIN      
        1 gccagcgcgc gctgcgccgg ggccgctgga agtacctcaa ggtcgacggc cacgaatacc
       61 tgttcgacct cccggccgac gagcgcgagc gcgccaatcg cgcgccgcgc gagccggccc
      121 ggctcgacgc gatgcgcgcc gactgggacg cctggaacgc gaccatgccg ccgatccccg
      181 gggacgcgag cgtcagcctc ggctacggca tgaaggacat gccgcagcgc tgaggcgcac
      241 cacgatccgc ctttccgatt cacccgccgt cacgagacac tgccatgcct gcatccgaag
      301 aaccccgcct cgatggcgcg ccggtgcgcc gctttcgcga cccgcgcatc ctgccgaagg
      361 ccgagaccct cggcgcgttg cgtgaccgga tcgacgcgct cgacgcgcag gtcgtggccc
      421 tgctggccga gcgcgcgctt tgcgtgcgcg acgccgcgcg cttcaagcgc aacgccttcg
      481 aggtcacgtc gcccgagcgc caggcgtggg tcttcgcgca tgtgcgcgtg ctcgccgccg
      541 cgcaggcctc agaattcgcg tcgctgcccg acgtgatcga ggccgcctac cgcgtgctcg
      601 tggccggctt catcgccgcc gaagggcgct ttttcgcaga gaccgagccc atcgattcat
      661 gagcatcttt cgtcgcgccg ttctcgtctg cggcctgcgc ggcgccgccg ccctcgcgct
      721 cggctgcatc ggtgccgccg ccttggccca gggcgcggca gcgggctggc cgaaccgggc
      781 gatccacatc gtcattccgt atgcggcggg gtcctcgccc gacgtcttcg cgcgcatcgt
      841 cgccgacaag atcgcaccgc gcctgggcca gccggtcgtc gtcgaaaacc gcgccggcgg
      901 cggcggcaac aacggcaccg gcgcggtcgc caaggcggcc ggcgacggct acacctttct
      961 ggtcagcacc aacgggccgc tggtctacaa cacggtgctc tacaagaagc tctcgtacga
     1021 tccgttcgcc gagttgcggc cggtcgtgat ggggggttcg caggccaacg tctgcgccgt
     1081 gcgcaccgat tcgggcatca acagcctggc cgagctcgtc aaggcgatgc gggccaatcc
     1141 gggcaagttc aatttcgcgt cgaccggcgt cggcagcctc tcgcacctcg gtgtcgaact
     1201 cctcaaggcg aagaccgaca ccttcgcggt ccacattcct tacgcatcgt cgccgctcgc
     1261 gatcctcgcg ctgctccagg gcgacgtcca gttcgcatgc gtgcccgccg tggcggtgat
     1321 tcctcaggtc aaggccggca agctccggcc gctcgccgtc tcgaccgccc agcgcagcgc
     1381 gctcacgccc gacattccga cgatgaagga agcgggcctg cccgaaatcg agaacatggc
     1441 gtggatggcg gtgatggccc cagcctccac gccgaccgaa atcgtcgagc gcatgaacca
     1501 ggaaatcaac gccgcgctcg cgctgcccga cgtgcgcgag aagctctcga cgcagttcat
     1561 ggaaccgatg ggcggatccg ccgccgacct gcagaagttc atgcgtcgcg aactgaccgt
     1621 gatgacgccg atcatcaagc gca
//
LOCUS       DASVHM010000676         1828 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_46525, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000676 DASVHM010000000
VERSION     DASVHM010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46525"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..560
                     /locus_tag="VF308_12515"
     CDS             <1..560
                     /locus_tag="VF308_12515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007863162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437525.1"
                     /translation="PNYKSFPILFPSEPFNIGGAVINTVQIMILVSTAVTLTALTYLV
                     NRTKLGRAMRATAENPRVAGLMGVRPDTVISATFVIGAALAALAGVMYAANYGSVQHT
                     MGFLPGLKAFTAAVFGGIGNLAGAMLGGVLLGLIESLGAGYIGALTGGILGSHYQDIF
                     AFIVLILVLTLRPQGLLGERVADRA"
     gene            571..1764
                     /locus_tag="VF308_12520"
     CDS             571..1764
                     /locus_tag="VF308_12520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018714140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437526.1"
                     /translation="MNIAKDNRVVVFAIAAVVLLVLPVAVQPFGNAWVRIIDIALLYV
                     LLALGLNIVVGYAGLLDLGYVAFYAVGAYMFGLLASPQLTDTFLSFKDTFPNGLHTPW
                     WVVIPLGALLAGGAGVLLGAPTLKLRGDYLAIVTLGFGEIVRVFLNNLDAPVNITNGP
                     KGLAQIDEISMFGVNLGKTQHLFGLEMPKVTNYYYLFLVLVIFAVIICHRLERSRIGR
                     AWMAIREDEVAAKAMGINTRNLKLLAFGMGATFGGVSGAMFATFQGFVSPESFSLQES
                     TMIVAMVVLGGLGHLPGVIVGALLLSALPGVLRYVAGPLQQMTDGRLDASILRQLLIA
                     LAMIGIMLARPRGLWPSPEHGKAGLPQPTVSPPNDDDPAVPQPVTPRTSTVTNVVHGS
                     GARHV"
BASE COUNT          262 a          633 c          609 g          324 t
ORIGIN      
        1 agccgaacta caagtcgttc ccaatcctct tcccgagcga gccgttcaac atcggcggcg
       61 cggtcatcaa cacggtgcag atcatgatcc tcgtgtcaac cgcggtcacg ctgaccgcgc
      121 tgacctacct cgtcaaccgc accaagctgg gccgggcgat gcgcgccacg gccgaaaacc
      181 cccgcgtggc cggcctgatg ggggtgcgac ccgacaccgt gatctccgcg accttcgtga
      241 tcggcgcggc gctggcggcg ctggccgggg tgatgtacgc ggccaactac gggtcggtgc
      301 agcacacgat gggcttcctg ccgggcctaa aggccttcac cgccgcggtc ttcggcggca
      361 tcggcaacct cgccggcgcg atgctgggcg gcgtgctgct cggcctgatc gaatcgctcg
      421 gcgcgggcta catcggtgcg ctgaccggcg gcattctcgg cagccactac caggacattt
      481 tcgcgttcat cgtgctgatc ctggtgctga cgctgcggcc gcaggggctg ctcggcgaac
      541 gcgtggccga ccgcgcctga ggaggaccgc atgaacatcg ccaaggacaa cagggtcgtc
      601 gtcttcgcga tcgcggcggt cgtgctgctg gtgctgccgg tcgcggtgca gccgttcggc
      661 aatgcctggg tgcgcatcat cgacatcgcc ttgctctacg tgctgctcgc gctcggcctc
      721 aacatcgtcg tcggctacgc cggcctgctc gacctgggct acgtcgcgtt ctatgcggtc
      781 ggcgcctaca tgttcggcct gctcgcttcg ccgcagctca ccgacacctt cctgtcgttc
      841 aaggacacgt tcccgaacgg cctgcacacg ccgtggtggg tggtgattcc gctcggcgcg
      901 ctgctcgccg gcggcgccgg cgtgctgctc ggcgcgccga ccctgaagct gcgcggcgac
      961 tacctcgcga tcgtgacgct cggcttcggc gagatcgtgc gcgtgttcct gaacaacctc
     1021 gatgcgccgg tcaacatcac gaacggcccg aagggcctcg cccagatcga cgagatctcg
     1081 atgttcggcg tcaacctcgg caagacgcag cacctcttcg ggctcgagat gcccaaggtc
     1141 acaaactact actacctgtt cctggtgctg gtgatcttcg ccgtgatcat ctgccaccgg
     1201 ctcgagcgca gccgcatcgg gcgcgcctgg atggcgatcc gcgaagacga ggtcgcggcc
     1261 aaggcgatgg gcatcaacac gcgcaacctg aagctgctcg ccttcggcat gggcgcgacc
     1321 ttcggcggcg tgtcgggggc gatgttcgcg accttccagg gcttcgtctc gcccgaatcg
     1381 ttcagcctgc aggaatcgac catgatcgtc gcgatggtcg tactcggcgg gctcggccac
     1441 ctgcccggcg tgatcgtcgg cgcgctgctg ctctcggccc tgcccggggt gctgcgctac
     1501 gtcgccgggc ccctgcagca gatgaccgac ggccggctcg acgcctcgat cctgcgccag
     1561 ctgctgatcg cgctggcgat gatcggcatc atgctggcgc ggccgcgcgg cctctggcct
     1621 tcacccgagc acggcaaggc gggattgccg cagcccacgg tgtcaccgcc gaacgacgat
     1681 gaccctgccg tgccgcagcc ggtgacgccg cgcacgagca cggtgacgaa cgtggtgcat
     1741 ggatcgggag cgcgccatgt ctgaggcggt cttgaaagtg ggcgcggttt cgaagcgctt
     1801 cggcggcctg caggcgctct cggatgtg
//
LOCUS       DASVHM010000677         1540 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_552489, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000677 DASVHM010000000
VERSION     DASVHM010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_552489"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..556
                     /locus_tag="VF308_12525"
     CDS             <1..556
                     /locus_tag="VF308_12525"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX7437527.1"
                     /translation="WAAPGAVAAGAYEHDAVAALQRFSGPVIGAINGLAITGGVEIAL
                     ACDVLIASTAARFADSHVQVGLLPGWGGSVRMARRIGLHRAKELALTGRVLSAEEAAS
                     WGFVNRVVAPEQLRSEAEAMARKMLAGVPETLVAYKRLLDAEEGTTLDEALRIERAAS
                     LANNVPVGRAEIDARLARLRGRKP"
     gene            556..1455
                     /locus_tag="VF308_12530"
     CDS             556..1455
                     /locus_tag="VF308_12530"
                     /inference="COORDINATES: protein motif:HMM:NF044908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase domain-containing protein"
                     /protein_id="HEX7437528.1"
                     /translation="MAGKLPAWDGRDLGELLRLEPTGPRRFRNRLGDANEHGRAYGGQ
                     LLAGAAMAAAAAVPEGRALTTLQTLFLQGALHDRPIDFEVTVLQDGRRFSSRHVRGSQ
                     GGDRLVLDAQVTFAVPMSAPDHMAPPEPLSMLAEDPDTMPRLSDLPPAWGEGLRRAVG
                     YTFDVKEALDFRLPAAPPSMHLELPEPRCRFWLKARHELPEDAHLHAAAFAYLSDWWL
                     NFPSVGGHLPQLAAGESLYVASLNHAIWLHRPLRADEWLHFDCISPSAVAGRSLSVAR
                     VHDRAGRLVASATQESLLAPAHG"
BASE COUNT          201 a          551 c          546 g          242 t
ORIGIN      
        1 atgggccgcc cccggcgcgg tcgccgcggg tgcctacgag cacgacgcgg tcgccgcgct
       61 gcagcgcttc tcggggccgg tgatcggcgc catcaacggc ctggcgatca ccggcggagt
      121 cgagatcgcg ctcgcctgcg acgtgctcat cgcttcgacc gcggcgcgct tcgccgacag
      181 ccacgtgcag gtggggctgc tgcccggctg gggcggctcg gtgcgcatgg cgcgtcgcat
      241 cggcttgcat cgcgccaagg aactggcctt gaccggccgc gtcctttcgg cggaggaagc
      301 cgcgtcctgg ggcttcgtca accgcgtcgt cgcgcccgag cagctgcgct ccgaagccga
      361 ggcgatggcg cggaagatgc tcgcgggcgt gcccgaaacg ctcgtcgcct acaagcgtct
      421 tctcgacgcc gaggaaggca ccacgcttga cgaggcgctg cgcatcgaac gcgccgcctc
      481 gctcgccaac aacgtgccgg tcggccgtgc cgagatcgac gctcggctcg cgcggctgcg
      541 cggtcgcaag ccgtgatggc cggcaagttg ccggcgtggg acggccgcga cctgggcgag
      601 ctgctgaggc tcgagcccac cgggccgagg cgctttcgca accggctcgg cgatgccaac
      661 gagcacggcc gggcctatgg cgggcagctg ctcgcgggcg cggcgatggc tgccgctgcc
      721 gcggtgcctg aaggtcgcgc gctgacgacg ctgcagacgc ttttcctgca gggcgcattg
      781 cacgatcgtc cgatcgattt cgaggtcacc gtgctgcagg acggccgtcg cttctcgtcg
      841 cgccacgtac gcggttcgca gggcggggac cgtctggtgc tcgatgcgca ggtgaccttt
      901 gcggtgccga tgtccgcgcc cgaccacatg gcgccgcccg agccgctgtc gatgctggcc
      961 gaagatccgg acacgatgcc gcggctttcc gaccttccgc cggcctgggg cgaggggctg
     1021 cggcgcgcgg tgggctacac cttcgacgtc aaggaggcgc tggactttcg cctacccgcc
     1081 gcgccgccgt cgatgcacct ggagttgccc gagccgcgtt gtcggttctg gctcaaggcg
     1141 cggcatgaac tgcccgagga cgcccatctg catgctgcgg cattcgccta cctgtcggat
     1201 tggtggctca actttccgag cgtcggcggc cacttgccgc agctcgccgc gggcgagagt
     1261 ctctacgtcg ccagtctcaa ccacgccatc tggctgcacc gaccgctgcg cgccgacgag
     1321 tggctgcact tcgattgcat cagccccagc gccgtcgccg gtcgcagcct ttcggtcgcg
     1381 cgcgtgcacg accgcgccgg acgcctcgtt gccagcgcga cgcaggagtc tctgctggcg
     1441 ccggcccacg gatgagcgcg atggcagcaa cggggttcga ctgatctccg gcgcgatcac
     1501 accgccgtcg atcactccgg aggacgccag ctcagaaccg
//
LOCUS       DASVHM010000678         2053 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1059067, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000678 DASVHM010000000
VERSION     DASVHM010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1059067"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..375
                     /locus_tag="VF308_12535"
     CDS             187..375
                     /locus_tag="VF308_12535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437529.1"
                     /translation="MKCAWVVLAAIGLVGCAPLSLQVANQSGGVEIDHARMAAVERAA
                     RAGGVQVVWINAPRKAGS"
     gene            440..1210
                     /locus_tag="VF308_12540"
     CDS             440..1210
                     /locus_tag="VF308_12540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HEX7437530.1"
                     /translation="MSLTTRPATPAPAQDLTDAEFAELDELLAATPEPLEPLDVVMLD
                     GYLCGVIVQPVLLEAATWLAHVFDFEGRPLPDDVDAAWQQRTTALALRRHAALNRALA
                     EDGWFEPLVLEPDDERPDEPPVPAHADAEAELAPISRALMPWVAGFQHAVACFPDLEE
                     MPDDAVMAALARLYRHLPAETDEERELVATLEREHPLASLDDAIEDLVANVADLYDLT
                     RDLRYKVDTVRRDAPKVGRNDPCPCGSGKKYKQCHGAG"
     gene            1283..2053
                     /locus_tag="VF308_12545"
     CDS             1283..2053
                     /locus_tag="VF308_12545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011803545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX7437531.1"
                     /translation="MRIQLLSDLHLETEVFAPVPAPGAELLVLAGDIDSTWAGFERFR
                     GWPQPILFVAGNHEFDGRELSEAWPALRARCEGLSMTMLERESVVRTDAGGKRIRFVG
                     TTRWCDFDLFGLARRDSAMRAASYYMQLMGSTRDGAPYDAAAVRIDALACRAWLQAEL
                     ERPVNGWDATVVITHFAPSVLSADPRYGLQSGTASFCNADDALIGRADLWIHGHLHCA
                     HDYRVMHAGGSTRVVCNARGHERKGEAAQHRPLLVLDV"
BASE COUNT          315 a          705 c          703 g          330 t
ORIGIN      
        1 aaaaccgagc tcggcctgca ccaaagccta ttcgaacaac tggcctatca cctgccggcc
       61 gaaatcaccc agaccaaggc gcgcatcgag gcgcgcctcg gggtccgatg agcgcgggcg
      121 cccggtcgac gctggctgaa tctctgtcta gagtcgacat ggggcgttcg ccccggggag
      181 tctccgatga agtgcgcttg ggtagttctg gcggctatcg gtcttgtggg ctgtgcccct
      241 ctttcgctgc aggtggccaa tcagtccggc ggcgtggaaa tcgaccacgc gaggatggcg
      301 gcggtcgagc gcgctgcgcg cgccggcggg gtccaggtgg tctggatcaa cgcaccgcgc
      361 aaagcgggca gctgaggctg cgctgcgcgc gagccctcgt cgctgacgtc gacgctgcct
      421 ttcgggcccg ggtgtcgtca tgtcgctgac gacccggccg gcaacgccgg ccccggccca
      481 ggatctcacc gatgccgagt tcgccgaact cgacgaactg ctcgcggcca cgcctgagcc
      541 gctcgagccg ctcgacgtgg tgatgctcga cggctatctc tgcggcgtga tcgtgcagcc
      601 ggtcctgctg gaggcggcga cgtggcttgc gcatgtgttc gacttcgagg gccggcctct
      661 gcccgacgac gtcgatgcgg cgtggcagca gcgcacgacg gctctggcgc tgcgccggca
      721 tgcggcgctg aatcgcgcgc tggctgaaga tggctggttc gagccgctcg tgctcgaacc
      781 cgacgacgag cggcccgatg aaccgcctgt ccctgcccac gcggatgcgg aggccgaact
      841 ggcgccgatc tcgcgcgcat tgatgccgtg ggtggcagga ttccagcacg cggtggcgtg
      901 ctttcccgat ctcgaggaaa tgcccgatga cgcggtgatg gcggcgctgg cgcgcctcta
      961 tcggcatctg cccgccgaga ccgacgagga acgcgaactg gtcgccacgc tcgagcgtga
     1021 acaccccctg gcgagtctgg atgacgccat cgaagacctg gtcgccaacg tcgccgatct
     1081 ttacgacctg acgcgcgacc tgcgctataa ggtcgacacg gtccggcgcg acgcgccgaa
     1141 ggtcggccgc aacgacccgt gcccgtgcgg tagcggaaag aagtacaagc aatgtcacgg
     1201 cgcgggctga acccgcgccg ccatttcccg tttccgtcgg tcagcagccg tctcgccgag
     1261 gcgacggacg cccgttgaat caatgcgcat ccagctcctc tccgacctgc acctcgagac
     1321 cgaagtcttc gcgccggtac ccgcgcccgg cgccgaactg ctggtgctgg ccggcgacat
     1381 cgacagcaca tgggccgggt tcgagcgttt tcgcggctgg ccgcaaccca ttctcttcgt
     1441 cgccggcaat catgagttcg acggtcgcga gctgagcgaa gcctggcccg cgctgcgcgc
     1501 gcgctgcgaa ggtctgtcga tgaccatgct cgagcgcgaa agcgtggtcc gcacggatgc
     1561 cgggggcaag cgcatccggt tcgtcggcac cacacgctgg tgcgacttcg atctgttcgg
     1621 cctggcgcgg cgcgactccg ccatgcgggc cgcaagctac tacatgcagt tgatgggctc
     1681 gacccgcgac ggcgccccgt acgacgctgc cgcggtccgc atcgacgcgc tggcctgccg
     1741 cgcctggctc caagccgagt tggagcggcc tgtgaacggc tgggacgcca ccgtggtcat
     1801 cacccatttc gcgccgagcg tgctcagcgc cgatccgcgc tatggcctgc agagcggaac
     1861 ggcgagcttc tgcaacgccg atgacgcgct catcgggcgg gccgatctct ggatccacgg
     1921 ccacctccat tgcgcacacg actaccgggt catgcatgcg ggcggcagca cccgcgtggt
     1981 gtgcaacgcg cgcggtcacg agaggaaggg cgaggccgcg cagcaccggc ccctgctggt
     2041 gctcgacgtc tga
//
LOCUS       DASVHM010000679         3388 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1059246, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000679 DASVHM010000000
VERSION     DASVHM010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3388
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1059246"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1361
                     /locus_tag="VF308_12550"
     CDS             <1..1361
                     /locus_tag="VF308_12550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011301537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ferrous iron transporter B"
                     /protein_id="HEX7437532.1"
                     /translation="SQLGGVLPAAPPESSVPEARSSADLQTEVRRIMALVAPKAAQFR
                     RFQHRIDAVVMHPVWGLALLAVVLFLMFQAVFSWANVPMDAIKGVMAGLGKWTTAHMA
                     EGPLRSLLVDGVIAGAGSVIVFLPQILILFFFILLLEDSGYLPRAAFLLDNVMGKVGL
                     SGRAFIPLLSSFACAIPGIMATRTITNWKDRLATIMVAPLMTCSARLPVYALLIGAFV
                     PDRSVGFLNLRGLTLFGLYVAGVASAMGVAWVFKRVWIKSRYQPLMLELPPYRVPGLR
                     NLVLGLWERARIFLRRVGGIIFALMVVLWFLSSFPAPPDGATGPAIQYSVAGWLGQAL
                     QHVFAPIGFNWQISIALVPGLAAREVAVGALGTVYSMSAAGNSVADALSPVIAQGWSL
                     ATAYSLLAWYVFAPQCISTLVVVKRETNSWRYPLLMAIYLFVLAYVAAFVTYRVTLWL
                     GR"
     gene            1365..1628
                     /locus_tag="VF308_12555"
     CDS             1365..1628
                     /locus_tag="VF308_12555"
                     /inference="COORDINATES: protein motif:HMM:NF042692.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6587 family protein"
                     /protein_id="HEX7437533.1"
                     /translation="MLAQTVIVALLVLGCAVYATWTLLPAGARRPIAKALLKLQLPGK
                     LAQVMRKHAEAANACGCDGCDRSSKKQAEPAMQTIRFQPRKRR"
     gene            complement(1784..2758)
                     /gene="ispH"
                     /locus_tag="VF308_12560"
                     /gene_synonym="lytB"
     CDS             complement(1784..2758)
                     /gene="ispH"
                     /locus_tag="VF308_12560"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEX7437534.1"
                     /translation="MAAANVTVEEIVLAEPRGFCAGVDRAIEIVERALTKFGAPIYVR
                     HEIVHNTYVVNDLKAKGAVFIEDLAEVPPGSTLVFSAHGVSQAVRHEAAARGFSVFDA
                     TCPLVTKVHIEVAKLHKEGYDFIMIGHKGHPEVEGTMGQLDEGIYLVEDVDDVERLDI
                     ARSDRLAVVTQTTLSVDDAAQILAAVKRRFPNVREPKQQDICYATQNRQDAVKMLAPG
                     VDVLIVVGSPTSSNSNRLRELAERLGTHAYMVDTPDDLLPQWFEGKRRVGLTAGASAP
                     DILVRQVIERLRALGAVSVRSLQGVAETVHFPLPMGLGDKAMGIAAKS"
     gene            complement(2758..3207)
                     /locus_tag="VF308_12565"
     CDS             complement(2758..3207)
                     /locus_tag="VF308_12565"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010463325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX7437535.1"
                     /translation="MSLPLVQPGSFLTLHYRLAGPDGADIVSTFGDAPATLSLGTGEL
                     APAMEERLLGLAEGAHESFELGPAVAFGPRNPELLQRVAHALLREHGDPEARYGVGDV
                     VQFPTPDGRGAYAGVVREVGAESLLLDFNHPLAGQSVTFEVQLIGVL"
     gene            3275..>3388
                     /locus_tag="VF308_12570"
     CDS             3275..>3388
                     /locus_tag="VF308_12570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015012907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0758 domain-containing protein"
                     /protein_id="HEX7437536.1"
                     /translation="MVLKDIPPDARPREKLLAHGPGSLADVELIALLLRTGL"
BASE COUNT          495 a         1201 c         1115 g          577 t
ORIGIN      
        1 aaagccagct cggcggcgtg ctgccggcag cgccgcccga gagctcggtt cccgaggcgc
       61 gctcgtcggc cgatctgcag accgaagtcc gccgcatcat ggcgctggtg gcgccgaagg
      121 ccgcgcagtt ccgccgcttc cagcaccgca tcgacgccgt cgtgatgcac ccggtgtggg
      181 gtctggcgct gctggcggtc gtgctcttcc tgatgttcca ggcggtgttc tcctgggcca
      241 acgtgccgat ggacgcgatc aagggggtga tggccggcct gggcaaatgg accaccgcgc
      301 acatggccga gggtccgctg cgcagcctcc tggtcgatgg cgtgatcgcc ggcgccggca
      361 gcgtgatcgt gttcctgccg cagatcctga tcctgttctt cttcatcctg ctgctcgaag
      421 actcgggcta tctgccgcgc gccgccttcc tgctcgacaa cgtgatgggc aaggtcggcc
      481 tctccgggcg cgccttcatc ccgctgctgt cgagcttcgc ctgcgcgatc ccgggcatca
      541 tggcgacgcg cacgatcacg aactggaaag accggctcgc gaccatcatg gtcgccccgc
      601 tgatgacctg ctcggcgcgc ctgccggtct atgcgcttct gatcggcgcc ttcgttcccg
      661 accgcagcgt gggcttcctg aacctgcgcg gcctgaccct cttcggcctc tacgtcgccg
      721 gtgtcgcgtc ggcgatgggc gtggcctggg tcttcaagcg ggtctggatc aagagccgct
      781 accagccgct gatgctggag ctgccgccct accgcgtgcc gggcctgcgc aacctcgtgc
      841 tcggcctctg ggaacgcgcc cgcatcttcc tgcgccgcgt cggcggcatt attttcgcgt
      901 tgatggtcgt gctgtggttc ctgtcgagct tcccggcgcc ccccgacggc gccacgggcc
      961 ctgcgatcca gtacagcgtc gccggctggc tcggccaggc gctgcagcac gtcttcgcgc
     1021 cgatcggctt caactggcag atctcgatcg cgctggtgcc ggggctggcc gcccgcgagg
     1081 tcgcggtcgg cgcgctcggc accgtgtatt cgatgtcggc ggccggcaac tcggtcgccg
     1141 acgcgctctc gcccgtgatc gcccagggct ggtcgctcgc gacagcctat tcgctgctcg
     1201 cctggtacgt gttcgcgccg cagtgcatct cgacgctcgt ggtggtcaag cgcgaaacca
     1261 actcgtggcg ctatcctctg ctcatggcga tctacctctt cgtgctcgcc tacgttgccg
     1321 cattcgtgac ctaccgcgtg accctctggc tcggacgctg acccatgctg gcccaaaccg
     1381 tcatcgtcgc attgctcgtg ctcggctgcg ccgtctacgc gacctggacc ctgctgcccg
     1441 caggcgcgcg ccgccccatc gccaaggcgc tgctgaagct gcaactgccc ggcaagctgg
     1501 cgcaggtgat gcgcaaacac gccgaggccg cgaatgcctg cggctgcgat ggctgcgatc
     1561 gttcatcgaa aaagcaggct gagcctgcca tgcaaacgat ccgcttccag cctcgcaagc
     1621 gtcgatagaa gcgcgtcgcg gcggccgcta cggcttccag agcgcagcgg aagcggcggg
     1681 cgggcccggg cggagtgaat aagaaatttc ctgaacgcag cccgggcccg cccggcgatt
     1741 ccgcgtcagc gcagccccag cgctcccagc gcagacaaga gattcaagac ttggcagcga
     1801 ttcccatcgc cttgtccccc agccccatcg gcagcgggaa gtgcacggtc tcggccacgc
     1861 cctgcaggct gcgcaccgag accgcaccca atgcacgcag ccgctcgatc acctgccgca
     1921 ccaggatgtc cggcgcggaa gccccggcgg tgaggccgac ccggcgcttg ccttcgaacc
     1981 actgcggcag cagatcgtcg ggggtgtcga ccatataggc gtgggtgccg agccgctcgg
     2041 cgagctcgcg caggcggttg ctgttcgagc tcgtcgggct gccgaccacg atgagcacat
     2101 cgacacccgg cgcgagcatc ttgaccgcgt cctggcggtt ctgcgtcgcg tagcagatgt
     2161 cctgctgctt gggctcgcgc acgttcggaa aacggcgctt caccgcggcg aggatctgcg
     2221 ccgcgtcgtc gaccgacaac gtcgtctgcg tgaccaccgc gagccggtcc gaccgcgcga
     2281 tgtcgagccg ttcgacgtcg tccacgtctt cgacgaggta gatcccttcg tcgagctgcc
     2341 ccatcgtgcc ctcgacctcg gggtggccct tgtggccgat catgatgaag tcgtagcctt
     2401 ccttgtgcag cttggcgacc tcgatatgaa ccttggtgac gagcgggcag gtcgcgtcga
     2461 agacgctgaa accgcgcgcc gccgcctcgt ggcgcaccgc ctgcgacacg ccgtgcgcgc
     2521 tgaagacgag cgtcgagccg ggcggcacct cggccaggtc ttcgatgaag accgccccct
     2581 tggccttcag atcgttaacg acataggtgt tgtggacgat ctcgtggcgc acgtagatcg
     2641 gcgcgccgaa cttcgtcagg gcgcgttcga cgatctcgat cgcgcgatcc acgccggcgc
     2701 aaaaaccgcg cggctcagcg aggacgatct cttcgacggt gacgttcgcc gcggccatca
     2761 caacaccccg atcagctgca cttcgaacgt caccgactgc ccggccagtg gatggttgaa
     2821 atcgagcagc agcgactcgg cgccgacttc gcgcacgacg ccggcgtagg cgccgcgccc
     2881 gtccggcgtc ggaaactgca ccacgtcgcc gacgccatag cgagcctcgg ggtcgccgtg
     2941 ctcgcgcagc agcgcatgcg cgacgcgctg gagcaactcg ggattgcgcg ggccgaacgc
     3001 caccgcgggc ccgagttcga acgattcgtg cgcaccctcg gccaggccga gcaggcgctc
     3061 ttccatcgcc ggcgcaagct cgccggtgcc gagcgacagg gttgccggcg cgtcgccgaa
     3121 ggtgctgacg atgtccgcgc catcggggcc ggcaaggcga tagtgaaggg tcaggaacga
     3181 ccctggctgc acgagaggaa gggacatggg cgcgttggat agactgcgat tgattttacg
     3241 aggcggcgcg agtgccgccc cgccgccgcc ccccatggtc ttgaaagaca taccccccga
     3301 tgcccgcccg cgcgaaaagc tgctcgcgca cggtccgggg tcgctcgccg acgtcgagct
     3361 gatcgccctg ctcctgcgca ccgggctg
//
LOCUS       DASVHM010000680         1555 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_626359, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000680 DASVHM010000000
VERSION     DASVHM010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_626359"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            165..1388
                     /locus_tag="VF308_12575"
     CDS             165..1388
                     /locus_tag="VF308_12575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX7437537.1"
                     /translation="MNDSTLNLAVVGAGPVGLALALHAARALPHATVTLFDARPADKD
                     VSADPRTLALSLGSVQLLERLGAWRADLAQPILEVHVSQAPPSTFALLGSWLGEPELR
                     IRAIDEAVPLLGAVMHYGGIVAPLQAVWTLAERDEPKRLHSRFGTPVAALKNIDGGVE
                     VDAGIAERFDLAVVAEGGVFAEQNRTLPTEQVRPGLRHDYRQTAWVGQVRFEAGAGPR
                     APGIAFERFTRHGPAALLPLKDDRAALVWCVASDDDPVRELSDAQRVAVLNTVFHASV
                     GRIASVTPLKSFALGLSAERTLTDGRTVRIGNAAQTLHPVAGQGLNLGLRDAFELVRA
                     LAKNPDVGAVLRQLEWQRAPDRWAMIFATDFLARSFTWKLPGAGAARGLGLFALQALG
                     PLKSAIARQMMFGSR"
BASE COUNT          229 a          570 c          530 g          226 t
ORIGIN      
        1 agggtgccgt cgcggtcctc ggtccactcg aggatgtcga tgaactgttt cttgacgaaa
       61 tccatcagcg ccatggcagc acactccaga tcaccccgac attcgggtgc ggcgaataat
      121 acgccggcag cccttgctgc aaccccccgg aaagggtgtg agacatgaac gattcgacgt
      181 tgaacctcgc cgtggtcggc gccggcccgg tgggcctggc gctcgccttg cacgcggcac
      241 gcgccctgcc gcacgcgacg gtcacgctgt tcgacgcgcg ccctgccgac aaggacgtgt
      301 cggccgaccc gcgcaccctc gcgctctcgc tcggcagcgt gcagctcctc gagcgcctcg
      361 gcgcctggcg cgccgacctg gcgcagccga tcctcgaagt ccatgtctcg caggcgccgc
      421 cgtcgacctt cgcgttgctc ggcagctggc tgggcgagcc cgagctgcgc atccgcgcga
      481 tcgacgaagc ggtgccgctg ctcggcgcgg tgatgcacta cggcggcatc gtcgcgccgc
      541 tgcaggcggt gtggacgctt gccgagcgcg acgaaccgaa gcgcctgcac agccgcttcg
      601 gcacgccggt cgcggcgctg aagaacatcg acggcggcgt cgaagtcgat gccgggatcg
      661 ccgagcgttt cgacctcgcc gtcgtcgccg aaggcggcgt gttcgccgag cagaaccgca
      721 cgctgcccac cgaacaggtg cggcccggcc tgcgccacga ctaccggcaa accgcgtggg
      781 tcggccaggt caggttcgaa gccggcgcgg ggccgcgcgc gcccggcatc gcattcgagc
      841 gcttcacccg ccacggcccg gccgcgctcc tgccgctgaa agacgacagg gcggcgctgg
      901 tatggtgcgt cgcgagcgac gacgacccgg tgcgcgaact cagcgacgcg cagcgcgtcg
      961 cggtgctgaa cacggtcttt cacgcgagcg tcggccgcat cgcttcggtg acgccgctga
     1021 agtcctttgc gctcgggctc agcgccgaac gcacgctcac cgacggccgc accgtgcgca
     1081 tcggcaacgc cgcgcagacg ctgcacccgg tcgccggcca ggggctcaac ctcgggctgc
     1141 gcgatgcctt cgagctggtg cgcgcgctcg cgaagaatcc ggatgtcggc gcggtgctgc
     1201 gccagctcga atggcagcgc gcgccggacc gctgggcgat gatcttcgcg accgactttc
     1261 tcgcccgcag cttcacctgg aagctgcccg gcgccggcgc ggcgcgcggt ctcggcctct
     1321 tcgcgctgca ggcgctcggg ccgctgaagt cggcgatcgc gcggcagatg atgttcggat
     1381 cgcgctgaag gaaatccacc ctcccacgac gaggcgcagc catgacgatc accgatctcg
     1441 acgcccacgc cctgtctgcg gcgatccatg cacgcgcggt ctcgtgccgc gaagtgatgc
     1501 aggcgtacat cgcccgcatc gaccgggtca acccgggcgt caacgcgatc gtcag
//
LOCUS       DASVHM010000681         2148 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1349407, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000681 DASVHM010000000
VERSION     DASVHM010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2148
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1349407"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1203
                     /gene="nuoD"
                     /locus_tag="VF308_12580"
     CDS             <1..1203
                     /gene="nuoD"
                     /locus_tag="VF308_12580"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEX7437538.1"
                     /translation="ANPVRSIFGTPLRDDSVIVNIGPSHPATHGTVQIIAELDGERVL
                     RTDIHCGYLHRGFEKECEDHTWHNLIPYVDRLNYVSALINDFAYCDGVEQLMGVQITP
                     RCRYLRTLLSEYSRLVDHLTCLAAGLMELGAMTAFLYLVMIRDYMYEHLAALTGARVT
                     YTYGRIGGLARDLPSGWLKRLEEILIQYEEFVARVHVLVDRNRIFIDRMRDVGVLSTA
                     DALSYGYTGPILRSTGVPIDLRKDMPYLAYAELDFEVPVGIKGDNYDRYFVRMREMDE
                     SVYMMRQLMEMLPEGPINVDDRRCTFPEKALVYSEIESLINHFKLVMDGPNVPPGEVY
                     CAHEAPNGELGFYLVSTGGGTPYKVHVRAPSFVHMGGVHRMLDGGQLADIVPTFGSIN
                     MIGGECDR"
     gene            1200..1667
                     /gene="nuoE"
                     /locus_tag="VF308_12585"
     CDS             1200..1667
                     /gene="nuoE"
                     /locus_tag="VF308_12585"
                     /inference="COORDINATES: protein motif:HMM:TIGR01958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HEX7437539.1"
                     /translation="MKHLIAEFEAMRKRYPAGFESSLVLPCVRRIQEDRGFVADSDID
                     GLAEYLGVPRIQIEEVLSFYTQFRRQPIGRWHLQACRNLSCSMRGAEGVIEHLGKRLG
                     IAPGETSADGRYTLSTVECLGSCGTAPVVMVNDTYHENMSTAALDALIAGLPK"
     gene            1664..>2148
                     /locus_tag="VF308_12590"
     CDS             1664..>2148
                     /locus_tag="VF308_12590"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF013662.4"
                     /note="part of NADH-ubiquinone oxidoreductase complex I;
                     shuttles electrons from NADH, via FMN and iron-sulfur
                     (Fe-S) centers, to quinones in the respiratory chain; NuoF
                     is part of the soluble NADH dehydrogenase fragment, which
                     represents the electron input part of NADH dehydrogenase;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit F"
                     /protein_id="HEX7437540.1"
                     /translation="MTGRKLLMTFPVTDTSHLLADYRGRGGYATLEKVLREMRPEEVT
                     KEVATSGILGHGGAAFPAGRKWGVIKLNDEQPHYLCANADEGEPGTFKDRWILENAPH
                     LLLESMLIAAYALQVRNAFVYIRGEFDLPYRRLAAAVEEAYQAGWFGERIAGTDFGCD
                     IV"
BASE COUNT          366 a          759 c          680 g          343 t
ORIGIN      
        1 gccaaccccg tgcgctcgat cttcggcacg ccgctgcgcg acgactcggt catcgtcaac
       61 atcggcccgt cgcacccggc cacgcacggc accgtgcaga tcatcgccga gctcgacggc
      121 gagcgcgtgc tgcgcaccga catccactgc ggctacctgc accgcggctt cgagaaggag
      181 tgcgaggacc acacctggca caacctgatc ccgtacgtcg accgcctcaa ctacgtgtcg
      241 gcgctgatca acgacttcgc ctactgcgac ggcgtcgagc aattgatggg cgtgcagatc
      301 acgccgcgct gccgctacct gcgcacgctg ctgtccgaat actcccgcct cgtcgaccac
      361 ctcacttgcc tggcggcagg gctgatggag ctgggcgcga tgacggcctt cctctacctg
      421 gtgatgatcc gcgactacat gtacgagcac ctggccgccc tcaccggggc gcgcgtgacg
      481 tacacctacg ggcgcatcgg cgggctcgcg cgcgacctgc cgtccggatg gctgaagcgg
      541 ctcgaagaga tcctgatcca gtacgaggaa ttcgtcgccc gcgtgcacgt gctggtggac
      601 cgcaaccgca tcttcatcga ccgcatgcgc gatgtcggcg tgctcagcac ggccgatgcg
      661 ctcagctatg gctacaccgg cccgatcctg cgttccaccg gcgtgccgat cgacctgcgc
      721 aaggacatgc cctacctggc ctacgccgag ctcgatttcg aggtgccggt gggcatcaag
      781 ggcgacaact acgaccgcta tttcgtgcgc atgcgcgaaa tggacgaatc ggtctacatg
      841 atgcgccagc tgatggagat gctgcccgaa ggcccgatca acgtcgacga ccggcgctgc
      901 accttcccgg aaaaagcgct cgtgtattcc gagatcgagt cgctgatcaa ccacttcaag
      961 ctggtgatgg acggcccgaa cgtgcccccc ggcgaggtct actgcgccca cgaggcgccc
     1021 aacggcgagc tcggcttcta cctcgtcagc acgggcggcg gcacgcccta caaggtgcac
     1081 gtgcgcgcgc cgagcttcgt ccacatgggc ggcgtgcacc gcatgctcga cggcggccag
     1141 ctcgccgaca tcgtgcccac cttcggctcg atcaacatga tcggcgggga gtgcgatcga
     1201 tgaagcacct gatcgcggag ttcgaggcga tgcgcaagcg ctatccggcc ggcttcgagt
     1261 cctcgctcgt cctgccctgc gtgcgccgga tccaggaaga ccgcggtttc gtggccgaca
     1321 gcgacatcga cggcctggcc gagtacctcg gcgtgccgcg catccagatc gaagaggtgc
     1381 tgtcgttcta cacccagttc cggcgccagc cgatcggccg ctggcacctg caggcgtgcc
     1441 gcaacctgtc ctgctcgatg cgcggcgccg agggcgtgat cgaacacctc ggcaagaggc
     1501 tcggcatcgc ccccggcgag acgagcgccg acggtcgcta cacgctgtcc accgtcgagt
     1561 gcctgggctc ctgcggcacc gcgccggtcg tgatggtcaa cgacacgtac cacgagaaca
     1621 tgagcacggc tgcgctcgat gcgctgatcg cggggttgcc gaaatgacgg gccgcaagct
     1681 cctcatgacc ttcccggtca cagacacttc gcacctcctg gccgactatc gcgggcgcgg
     1741 cggctatgcc acgctcgaga aggtgctgcg cgagatgcgc cccgaagagg tcaccaagga
     1801 agtggccacc tccggcatcc tcggccacgg cggcgcggcc ttcccggccg ggcgcaagtg
     1861 gggcgtcatc aagctcaacg acgagcagcc gcactacctc tgcgccaacg ccgacgaagg
     1921 cgagcccggc accttcaagg accgctggat cctcgagaac gcaccgcatc tgctgctcga
     1981 gtcgatgctg atcgcggcgt atgcgctgca ggtgcgcaac gccttcgtct acatccgcgg
     2041 cgagttcgac ctgccgtacc ggcgcctggc cgcggcggtc gaagaggcct accaggccgg
     2101 ctggttcggc gagcgcatcg ccggcaccga tttcgggtgt gacatcgt
//
LOCUS       DASVHM010000682         6282 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_988460, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000682 DASVHM010000000
VERSION     DASVHM010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6282
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_988460"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2856)
                     /locus_tag="VF308_12595"
     CDS             complement(<1..2856)
                     /locus_tag="VF308_12595"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEX7437541.1"
                     /translation="MAALVQAQRMLANSEATPDELIDGIPDLALTVIQAAAAVFELPE
                     GDAMVCRAASAAATDRAGMQLALRGSISGEAILLNRTLRCDDAETDPRVDAAAFRRSG
                     MRSVVATVVRDKSGPIGVIKLMDHRAAHFGAAEADCLELLAEALGAVIQRKRAEQDAQ
                     RALRIQAGIVRLQQQIASSPADLQTSMDLIAERAQELTGAEGASIAFVDGEDLAYRAV
                     CGMAVARLGLRVRLQGSLAGLSVERDELLRCDDSETDPRVNRAACREFGVRSVMIAPL
                     RAGDRVVGALRVVSRRTNAFAQIDGGTLQMLAEWLGVVLHRDAAAEQLRSSEAQYRLI
                     FAGHSLPMWVYDMETLRFLAVNDAAIGQYGFSKAEFLSMTIRDITPPAAFALLDRHLA
                     ARSREPATIASWAHRKKDGAVVDVELSANTIRFAGRPARLVLAHNITERKRAERRLEK
                     SEALLNIAARAARVGGWSLDLRDQVFSWSDELCAIHDLPPGSPCTVEEALAFYAPESR
                     AAMGAAMSSMRSDGTPYDLELELISAGGQRIWVRTMGQAVRDAAGAIVGMQGALQDIS
                     EKRQAEEKVRTLAASLTTTLESITDAFYTVDRDWRFTYVNSEAERLFQRSRADLMGRV
                     LWETFADLLGGEFERQYRNAVDCNSSVAFEAYYAPWQQWFEVRAYPSEAGLTVYLRDV
                     NERHHEQEQLILLQTCVAWMRDVVIITDAGPLEGSDPRIVFVNEAFSRHTGYSRDEVL
                     GRTPRLLQGPKTQRAELDRISSAVQRCQPVRAEIINYTKSGVEYWVEIEIVPVWSGAA
                     KVTHFIAVQRDTTERRLAQEALRSLNEDLEATVARRTVQLKLTNSVLASKEEEIRSVV
                     EHMADCVITFSDDGIVRSANSKVEAIFGHAPSELVGQDVSTLIPVLGVLEAAPTKDGR
                     LSLEGAIARLGRETEGRHRNGVHLILEVAISRYRIHGK"
     gene            3175..4095
                     /locus_tag="VF308_12600"
     CDS             3175..4095
                     /locus_tag="VF308_12600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012250695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7437542.1"
                     /translation="MRAVFVDANPALADIAQRLHRPDDARLELVLGRADITPDELPEA
                     LAGAGIAVIDHTSLPIAVARRCAGLAHVVFLGTGARSYMNPEALAEIGIAVHTIKGYG
                     DTAVAECAMGLLWAAAKGYARMDREMRAGRWLRTEGVQLTGKTLGLIGFGGIAAEVAR
                     LALGIDMKVLAWNRTPRTCEGVRFVALDELLAGSDAVSLHLLLCDETKGFLSGERIAA
                     MRRGAILVNTARGALVDELAMVEALASGQLAHAGLDVFEIEPLPAGHVLTTLANVTLS
                     AHSAFRTPEANHNLVAAAFAHCRRIVEEGR"
     gene            complement(4096..6129)
                     /locus_tag="VF308_12605"
     CDS             complement(4096..6129)
                     /locus_tag="VF308_12605"
                     /inference="COORDINATES: protein motif:HMM:NF012640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HEX7437543.1"
                     /translation="MLRCSVARRAAAAAEVDAALARLDSAPGIYFGCDRGVAGLHPRQ
                     ATLLVNPALALRVFEDGLEALALDALGEALLRQSALAAFASACGRGAGRAALAALRAF
                     LCAFEAIDDALLVGAFRFEAHRLAAPAPHGDAAEATPLGFLFFAPTLLRRDGGGDWHC
                     VSLRFADPALAALQAHGDGVDALSSAPASDASATETGIAAAAPADDFPLGGYAAVVAR
                     AVERLGREPLVSLTLSQSFRRRVDPALSPAQAFAALRCANPAPATFFVNTGAGERLFG
                     ASPDLQLRVHGREIESFPVCGTVARGHGPVGEAESFRQLINEEVDAASLAVCTDALRN
                     DLAPLCEPGSLRLVDRRRLLALATVVHTVDRLKGRLRAGCDAWDAIVATAAPAMVTGT
                     PRALALAAIAALEAGPRGWYGGLVVQLAASGDALAGTILRAAAIRDGIAEVRSGGDLM
                     ADSDPAREEHESRVKAVSLWRALGLPVAADLDARLAGAAPTSTPALAALPVAVALCDA
                     GDPFAQAVAETLQALGLGLDAAASTRVLVGADPATCAAVASHVGGLVAIGDAAARVLG
                     HAGFAVAPIRPEHGRPVQCVPNAEGPATAGRSFTAMRYATLAIDWGPQRRPVTASGWA
                     VWIHDARQRPLVLAHAARRTVCLLLRPESLLSDELARAVLRAAIAFAAGRNAS"
BASE COUNT          982 a         2198 c         2200 g          902 t
ORIGIN      
        1 cttcccgtgg atccgatagc ggctgatcgc gacctcgagg atgaggtgaa caccgtttcg
       61 gtgccgcccc tcggtctcgc ggccgagccg ggcgatcgcg ccttcgaggc tcaggcgtcc
      121 atccttcgtc ggcgccgcct cgagcacgcc cagcaccggg atcagggtgg agacgtcttg
      181 tcccacgagc tcggagggcg cgtggccgaa gattgcttcg accttggaat tcgcggagcg
      241 gacgatgccg tcgtccgaga aagtgatgac gcagtcggcc atgtgctcga ccaccgagcg
      301 gatttcctct tccttgctgg cgagaacgct gttggtgagc ttgagctgga cggtccgcct
      361 cgccaccgtg gcctcgaggt cctcgttcaa tgagcgcagc gcctcctggg cgagccggcg
      421 ttcggtcgtg tcgcgctgca cggcgatgaa atgggtcacc ttggcggcac cggaccagac
      481 cgggacgatc tcgatttcca cccagtattc gacgcccgat ttcgtgtagt tgatgatttc
      541 cgcccgcacc ggctggcagc gctgcacggc gctcgagatc cggtcgagtt cggcacgttg
      601 ggtcttcggg ccctgcagca gccgcggcgt ccggcccagc acttcgtcgc ggctgtaacc
      661 ggtgtggcgg ctgaatgcct cgttgacgaa cacgatgcgc ggatccgaac cctccaacgg
      721 acccgcgtcg gtgatgatga ccacgtccct catccaggcc acgcaggtct gcagcaggat
      781 cagctgctcc tgctcgtggt ggcgctcgtt cacgtcgcgc aaatagaccg tcaggccggc
      841 ttccgacggg taggcgcgga cctcgaacca ctgctgccac ggggcatagt aggcctcgaa
      901 agcgacggag gagttgcaat cgacggcatt gcgatactgg cgttcgaact cgcctccgag
      961 caggtcagcg aacgtctccc agagcacccg acccatcagg tcggcgcgcg agcgctggaa
     1021 caggcgttcg gcttccgagt tgacgtaagt gaagcgccag tcgcgatcga cggtgtagaa
     1081 cgcgtcggta atgctttcca gcgtcgtcgt caggctcgcc gcgagcgtgc gcactttctc
     1141 ctcggcctgc ctcttttcgg aaatgtcctg aagcgctcct tgcattccga cgatcgctcc
     1201 cgccgcatcg cgcaccgcct gccccatggt gcgcacccag atgcgctgtc cgccggcgct
     1261 gatgagctcg agctcgaggt cgtacggcgt gccgtcgctg cgcatggatg acatcgccgc
     1321 gcccatcgcc gcccgcgatt ccggcgcata gaaggcgagc gcctcttcga ccgtgcaagg
     1381 gctgcccggc ggcaaatcat gaatcgcgca aagctcgtcg gaccaggaaa agacctggtc
     1441 ccgcaggtcc agcgaccacc cgccgacgcg cgcggcgcgc gcggcgatgt tgagcagcgc
     1501 ttcgcttttc tcgagccggc gttcggcccg cttgcgctcg gtgatgttgt gggcgaggac
     1561 aaggcgtgcc ggccggcccg cgaagcggat cgtgttcgcg gacaattcga cgtcgacgac
     1621 cgctccgtcc ttcttgcggt gcgcccagct tgcgatggtc gccggttcgc ggctgcgcgc
     1681 ggcgaggtgc cgatcgagca aggcgaaggc cgccggcggg gtgatgtcgc gaatcgtcat
     1741 cgacaggaac tcggccttcg agaagccgta ctgcccgatc gcggcgtcgt tgacggcgag
     1801 aaagcgcagg gtctccatgt cgtagaccca catcggcagg gagtgccccg cgaagatgag
     1861 acggtattgc gcttccgagc tgcgcagctg ttcagccgcg gcatcgcggt gcagcacgac
     1921 acccagccat tcggccagca tctgcaaggt cccgccatcg atctgcgcga acgcgttcgt
     1981 gcgccgggaa accacccgca gcgcgccgac cacgcggtcg ccggcgcgca ggggcgcgat
     2041 catcaccgac cgaacgccga attcgcgaca ggctgcgcga ttgacgcgcg ggtcggtctc
     2101 agaatcatca cagcgcagca gttcgtcgcg ctcgaccgag aggccggcga ggctgccctg
     2161 gagcctgaca cgcaggccga ggcgtgcgac cgccatgccg cacaccgcgc gataggccag
     2221 atcctcgccg tcgacgaagg cgatcgacgc cccctcggca cccgtcaatt cctgcgcgcg
     2281 ctcggcgatc agatccatcg acgtctgcag gtcggcaggg gacgacgcga tctgttgttg
     2341 caagcggacg atgccggcct ggatccggag cgcccgctgc gcgtcctgct cggcacgctt
     2401 gcgctggatc accgcgccga gcgcctctgc gagcagctcg aggcagtcgg cctcggcggc
     2461 gccgaagtgc gccgcacggt ggtccatcag cttgatcacg ccgatcgggc ccgacttgtc
     2521 gcggacgacc gtcgcgacca ccgaacgcat gcccgacctc cggaaagctg ccgcgtcgac
     2581 acggggatcg gtctcagcgt cgtcgcagcg cagggtgcgg ttgagaagga tcgcctcgcc
     2641 cgaaatgctg ccccgcagag cgagttgcat gccggccctg tcggtcgctg ccgccgacgc
     2701 cgcgcggcag accatcgcgt cgccctcggg caactcgaag accgcggccg cggcctggat
     2761 gacggtcaag gccaggtccg gaattccgtc gatcaattca tcgggcgtcg cctcgctgtt
     2821 cgccagcatg cgctgggcct ggaccagcgc cgccatccgt tcggcatgcg gccgcggctc
     2881 gcattcggcg caatcggtcc tgcgatgatc cgaagcctca tgcggcggcg gctcttctga
     2941 ggggagggga atgggcaatg gggactcgat tccgatcggc gggcagtgcc gacgctgacc
     3001 ctgcgatcgt acgagtggat cacgcgcggg gcgaccggcg aacgtgcatt ccgcactcaa
     3061 agcggaaccg gtttcgcggg gcagcgcggc cgcacgcgag atgggtggca aaagccggcc
     3121 agttccgggc tcttcgcgga ttcgggcgcg gaaagcgcaa ggcagaatgc atcgatgcgc
     3181 gccgtcttcg tcgatgccaa cccggccctc gcggacatcg cgcagcgcct gcatcgtccc
     3241 gacgatgcgc gcctcgagct cgtgctcggc cgggccgaca tcacgcccga cgaattgccc
     3301 gaggccctgg ccggcgccgg gatcgcggtc atcgatcaca cgagcctgcc gatcgcggtg
     3361 gcgcgccgtt gcgccggcct cgcgcatgtg gtctttctcg gcaccggcgc gcgcagctac
     3421 atgaaccccg aagcgctggc cgagatcggc atcgcggtgc acacgatcaa gggctacggc
     3481 gacaccgccg tggccgaatg cgcgatgggc ctgctgtggg cggccgcgaa gggctatgcg
     3541 cgcatggacc gcgaaatgcg cgccggccga tggctgcgca ccgaaggcgt ccagctcacc
     3601 ggcaagacgc tcggcctgat cggcttcggc ggcatcgctg ccgaagtggc gcggctcgcg
     3661 ctcggcatcg acatgaaggt gctggcctgg aaccgcactc cgaggacctg cgaaggcgtt
     3721 cgcttcgtgg cgctcgacga actgctcgcg gggagcgacg ccgtctcgct gcacctgctg
     3781 ctctgcgacg agaccaaggg atttctttcg ggcgagcgca tcgccgcaat gcggcgcggc
     3841 gcgatcctcg tcaacaccgc gcgcggcgcg ctcgtcgacg agctcgcgat ggtcgaggcc
     3901 ttggcttcgg gccagctcgc gcacgccggc ctcgacgtgt tcgagatcga gccgctgccc
     3961 gcgggccacg tgctgacgac cctggccaac gtgacgcttt cggcgcactc ggcgttccgc
     4021 acgcccgagg ccaaccacaa tctcgtcgcg gcggcgttcg cgcactgccg ccgcatcgtc
     4081 gaagaaggtc gctgactacg acgcattgcg gccggcggcg aatgcgatcg cggcacgcag
     4141 cacggcgcgc gcgagttcgt cggagagcag ggattctggg cgcagcaata ggcacacggt
     4201 gcggcgcgcg gcgtgcgcca gcacgagcgg gcgctgccgc gcgtcgtgga tccatacggc
     4261 ccagcccgag gcggtgacgg ggcggcgctg cggcccccag tcgatcgcca gcgtcgcgta
     4321 gcgcatcgcg gtgaatgagc ggccggccgt cgcgggcccc tcggcgttcg gcacgcactg
     4381 caccgggcgg ccgtgttcgg gccggatcgg agccactgcg aacccggcat gcccgagcac
     4441 gcgcgccgcc gcatcgccga tggcgacgag gccgccgacg tgcgacgcga ctgcggcgca
     4501 ggtcgccgga tccgcaccga ccagcacccg ggtcgacgcc gcggcatcga gaccgagacc
     4561 gagagcctgg agcgtttcag ccacggcctg cgcgaacgga tcgccggcat cgcacagtgc
     4621 cacggcgacc ggcagcgcgg ccagcgcagg cgttgaagtc ggtgcggcgc cggcgagtcg
     4681 agcgtccaga tcggccgcga ctggcaggcc gagcgcgcgc cacaacgaga cagccttgac
     4741 gcgcgattcg tgctcttcgc gggcagggtc ggaatcggcc atcaggtcac cgccgctgcg
     4801 cacttcggcg atgccgtcgc ggatggccgc ggctcgcagg atggtgccgg cgagcgcgtc
     4861 gccgctcgcc gccaactgca ctacgaggcc gccgtaccag ccgcgcggcc cggcctcgag
     4921 cgccgcgatg gcggcgagcg caagcgctcg cggtgtgccc gtcaccatcg ccggcgccgc
     4981 ggtcgcgacg atcgcatccc atgcgtcgca accggcgcgc aggcgcccct tcaggcgatc
     5041 gacggtatgc acgacggtcg cgagcgccag caagcggcgc cggtcgacga ggcgcagcga
     5101 gcccggctcg cacagcggcg caagatcgtt gcgcagtgca tcggtgcaca cggcgagcga
     5161 cgcggcatcg acctcttcgt tgatcagctg ccggaacgat tcggcctcgc ccaccggccc
     5221 atggccgcgc gccacggtgc cgcagaccgg gaacgactcg atctcacgcc cgtgcacgcg
     5281 caactgcagg tcgggcgatg cgccgaacag gcgctcgccc gcgccggtgt tgacgaagaa
     5341 ggtggccggt gccgggttcg cgcatcgcaa tgcggcgaac gcctgcgccg gcgagagggc
     5401 ggggtcaacg cggcgccgga agctctggct caaggtcagc gagacaagcg gctcgcgccc
     5461 gagccgctcg acggcacgcg ccaccacggc cgcatagccg cccaacggaa agtcgtctgc
     5521 gggggccgcc gcggcgattc ccgtttcggt cgcggaggcg tcagaggcgg gcgctgagga
     5581 cagtgcgtcg accccatcgc catgcgcctg cagcgcggcg agggccgggt cggcgaagcg
     5641 cagcgacacg cagtgccagt cgccgccgcc gtcgcgccgc agcagcgtcg gcgcgaaaaa
     5701 gagaaaaccg agcggcgtcg cctcggctgc gtccccatgc ggcgccgggg cagcgagtcg
     5761 atgcgcctcg aaacggaatg ccccgacgag cagcgcgtca tcgatcgcct cgaacgcgca
     5821 caggaacgcg cgcaaggccg cgagcgccgc acggccagcg ccgcgcccgc atgccgaggc
     5881 aaaggcggcg agcgcggact gtcgcagcag cgcttcgccc agggcatcga gcgccagcgc
     5941 ctcgagcccg tcctcgaaga cccgcaacgc gagcgcagga ttcaccagca gcgtggcttg
     6001 ccgcggatgc aggccggcga cgccgcgatc gcagccgaag tagatgccgg gcgcgctatc
     6061 gagccgcgcc agggcggcgt cgacctccgc cgctgcggcg gcgcggcgcg cgacggagca
     6121 gcgcagcacc gcgggcttcc tattcgaccg tggcgccgct gcgcttgatg atcggcgtca
     6181 tcaccgtcag ttcgcggcgc atgaacttct gcaggtcggc ggaagagcca cccacgggtt
     6241 ccatgaattg cgccgagagc ttctcgcgca cctcgggcag gg
//
LOCUS       DASVHM010000683         2933 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_191966, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000683 DASVHM010000000
VERSION     DASVHM010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2933
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191966"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2119)
                     /locus_tag="VF308_12610"
     CDS             complement(<1..2119)
                     /locus_tag="VF308_12610"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEX7437544.1"
                     /translation="MSALRPFSFIAALFLLIGPALGADDSESSSGTFSTPGYPPRSSS
                     TSGNGAASQGGSATTPAGAAPNARPLAGSNGNALDARQGRQAGQTNDAAVLRFEPRPP
                     PKPSEFQKFVEGATGRLLPVFGSAFFNDAAESFNPVDNVPVSADYTVGPGDEVILRAW
                     GSIDVDYRTTVDRNGLLNLPKIGSFNVAGVKASELENHLRAQIGRLYNNFNLSVALGQ
                     LRAVKVFVVGPAQRPGVYTLASQSTLLSALVAAGGPAPNGSMRKITLRRDGRAISELD
                     VYEFLVQGDKSKDMQLAAGDVVVFQPAGARVALAGAVDTPAIYELKTAQEPLRELLRY
                     AGGAPVLANPNRVQLERIDPAQPSAARFVEEFRLDAAGQQKALRDGDVVTLLAISPQF
                     ANAVTLKGHVAQPLRYPYTSGMRIRDLIPDREALISPDFYRRKNLLVQIIEDDEDALR
                     ADRAADAELARVARNARAVGAPATPSVPGAATDTPRRGTERTQRDEDRAAALRAKKTP
                     AALFEDLNWDYAVIERLNLADLTTQVIPFNLGKAVLQGDDANNVALLPGDVVTIYSQK
                     DVRVPVARQTRLVSVEGEINSPGVYQLMPGDTLKSLLARAGGFTAQAYVYGIEFSREE
                     TRARQRENLSAAIARLESLAAVQSARDAANRRDDPSGAATSAAVSSTATQAQLSRLAR
                     IQPNGRIALELTPDATTLDALPDP"
     gene            complement(2337..2801)
                     /locus_tag="VF308_12615"
     CDS             complement(2337..2801)
                     /locus_tag="VF308_12615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012655367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX7437545.1"
                     /translation="MNRFFKSLSLALIPLVAALTALPAAAQFAKPEDAIKYRRSALTV
                     MGAHFGRVAAMANGRVPFDAKAVAENAEIATFMSKLPYAGFVEGSDKGDTKAEPKIWA
                     EKDKFNAAATKMQEEMAKLNVVAKTGNIDVIKAAVGETGKACKACHDAYRKE"
BASE COUNT          402 a          953 c         1073 g          505 t
ORIGIN      
        1 gcgggtcggg cagtgcgtcg agcgtggtcg cgtcgggcgt cagttcgagg gcgatgcggc
       61 cgttcggctg gatccgcgcg aggcgcgaca gctgggcctg tgtcgcggtg ctgctgaccg
      121 cggcgctggt cgcggctcct gacgggtcgt cgcgccgatt cgcggcgtcg cgcgcgctct
      181 gcactgccgc gagcgattcg agccgcgcga tcgcggcgct caggttctcg cgctggcgcg
      241 cccgggtttc ctcgcggctg aattcgatgc cgtagacata cgcctgcgcg gtgaagccac
      301 cggcccgggc aagcaggctc ttcagggtat cgcccggcat cagctggtag acgccgggtg
      361 aattgatttc gccttcgacc gagacgagac gcgtctggcg cgcgaccgga acgcgcacgt
      421 ccttctggct gtagatcgtc accacgtcgc cgggcagcaa ggcgacgttg ttggcgtcgt
      481 cgccctgcag caccgccttg ccgaggttga acgggatcac ctgtgtcgtc aggtcggcga
      541 ggttgagccg ctcgatcacg gcgtagtccc agttcagatc ctcgaagagc gccgccggcg
      601 ttttcttcgc gcgcagggcg gcggcgcggt cctcgtcgcg ttgggtgcgc tctgtgccgc
      661 ggcgcggggt gtcggtggcc gcgcccggaa cgctcggggt agccggagcc cccacggcgc
      721 gcgcattacg ggcgacgcgc gcgagttccg catcggccgc gcggtcggcc cgcagggcgt
      781 cttcgtcgtc ctcgatgatc tggacgagca ggttcttgcg ccgatagaag tcgggcgaga
      841 tcagggcctc gcgatcgggg atcaggtcgc gaatgcgcat ccccgacgtg tacggatagc
      901 gcagcggttg cgcgacgtgg cccttgagcg tcacggcgtt cgcgaactgc ggcgagattg
      961 cgagcagggt cacgacgtcg ccgtcgcgca gcgccttttg ctggcccgcg gcgtcgagcc
     1021 ggaactcctc gacgaaacgc gccgcgctcg gctgcgcggg gtcgatgcgt tcgagctgca
     1081 cccggtttgg attggccagc accggcgccc cgccggcata gcgcaacagt tcccgcaagg
     1141 gctcctgcgc agtcttgagt tcgtagatcg ccggcgtgtc gaccgcgccg gccagcgcga
     1201 cccgcgcccc ggcgggctgg aacacgacca cgtcgcccgc ggcgagctgc atgtccttgg
     1261 atttgtcgcc ctggaccaga aactcgtaga cgtcgagctc ggagattgcg cgcccgtcgc
     1321 ggcgcagcgt gatcttgcgc atcgagccgt tgggggccgg gccacccgcc gcgacgagcg
     1381 ccgagagcaa cgtcgattgg ctggccagcg tgtagacgcc aggccgctgc gccgggccga
     1441 cgacgaacac cttgaccgcg cgcaactggc cgagcgcgac gctcaggttg aagttgttgt
     1501 agaggcgtcc gatctgtgcg cgcagatgat tttcgagttc ggaggctttc acgccggcga
     1561 cgttgaagct gccgattttc ggcaggttca gcagaccgtt gcggtcgacc gtggtgcgat
     1621 agtcgacgtc gatcgagccc caggcgcgca ggatgacctc gtcccccggc ccgaccgtgt
     1681 agtcggccga gaccggcacg ttgtcgaccg ggttgaagct ctccgcggcg tcgttgaaga
     1741 aggccgaacc gaacaccggc aggagtcggc cggtcgcacc ctcgacgaac ttctggaact
     1801 cgctcggctt gggtggcggg cgcggctcga agcgcagcac ggccgcgtcg ttcgtctggc
     1861 ccgcttggcg gccctggcgc gcatcgagag cgttgccgtt cgagccggcc aggggcctgg
     1921 cgttcggggc agctcccgcc ggggtcgtgg cgctgccacc ctgggacgcg gcgccgtttc
     1981 cggaggtgga actcgaacgc ggcggatagc caggcgtgct gaaggtgccg ctcgaactct
     2041 cggaatcgtc ggcgccgagc gccgggccga tcagcaggaa cagcgcggcg atgaaactga
     2101 acggtcgaag tgcggacacg gtgatggagg ctggcaggcc acggattcgg aaacggagtg
     2161 cgggcccgga cggacgggtc tctcgccgcg gcggctcggg ccggacgcgc ggcggggcca
     2221 aggcccgcag gccgacccgc cggcgatggt aacggatgcc gctatttccc ctgcgcggcc
     2281 atgcccgctg cggccccgcc gtgcctccgc gccgtgcgac cccggggtcg cacgagtcat
     2341 tccttgcggt aggcgtcgtg gcaggccttg caggccttgc cggtctcgcc gaccgcggcc
     2401 ttgatcacgt cgatgttgcc ggtcttggcg acgacgttga gcttggccat ttcttcctgc
     2461 atctttgtcg ctgccgcgtt gaacttgtct ttctcggccc agatcttcgg ctcggccttg
     2521 gtgtcgccct tgtcgctgcc ctcgacgaat ccggcgtacg gcagtttcga catgaaggtc
     2581 gcgatttcgg cgttttcggc gaccgccttg gcgtcgaacg ggacacggcc gttggccatg
     2641 gcggcgaccc ggccgaagtg ggcgcccatc acggtcagcg cggacctgcg gtatttgatc
     2701 gcatcctcgg gtttggcgaa ttgcgccgcc gccggcaacg cggtgagcgc cgccacgagc
     2761 gggatgaggg caagagacag tgacttgaag aaacgattca tgcgagtgct cctgcgaggg
     2821 aattcggttg atggtcaggc gttgtgccgt ttccttgcgg tggccgcagc ggccgagtgt
     2881 aagcagtgcc cgggtaccga aggccgcgcc tcgggaaaat acgcatgccc gcg
//
LOCUS       DASVHM010000684         1842 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_988564, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000684 DASVHM010000000
VERSION     DASVHM010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_988564"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..619
                     /locus_tag="VF308_12620"
     CDS             <1..619
                     /locus_tag="VF308_12620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEX7437546.1"
                     /translation="SVGLSGYGKPGNYFERQIGRWTKQYLASITEPIEAMDRLIEWLP
                     AHIPASARDATQVAVVHGDFRLDNLVFDATEPRIVAVLDWELSTIGHPLADFSYHCMS
                     WHIAPGSSHASRGIAGLDHAALGIPTERDYVRRYCERTGRPDPDAVMADWNFYLAYNL
                     FRIAGILQGIAKRVETGTASSTQARQSAAGARPLAEMGWRMAQQA"
     gene            652..>1842
                     /locus_tag="VF308_12625"
     CDS             652..>1842
                     /locus_tag="VF308_12625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011811995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7437547.1"
                     /translation="MDFNYSNRTKELQAQLLRFMDEHIYPAEASYEAEIEANTKAGKR
                     WTPLQTIEALKPKARAQGLWNLFLPPTAGGQSAAHTGRDFGLSNSDYAPLAEVMGRVP
                     WSSEVFNCSAPDTGNMETIERYGSPEHKAKWLAPLLDGKIRSAFAMTEPAVASSDATN
                     IEARIEREGDEYVINGRKWWTSGAGDPRCKIYIFMGKTDFDAPRHSQQSMVLVPADTK
                     GIKVLRGLSVFGYDDAPHGHMEVLFENVRVPTSNILLGEGRGFEIAQGRLGPGRIHHC
                     MRLVGLAERALELMCRRASSRVAFGRTIAEQGVTRERIAEARCRIDMARPLTLKAAGM
                     MDVAGNKTAKAEIAMIKVVAPNMACDVIDWAIQVHGGGGVSDDFPLAGFYAGARTLRF
                     ADGPD"
BASE COUNT          330 a          652 c          603 g          257 t
ORIGIN      
        1 gagcgtcggt ctgtccggct acggcaagcc aggcaactac ttcgagcgtc agatcgggcg
       61 ctggaccaag caatacctgg cctcgatcac cgagccgatc gaagcgatgg accggctgat
      121 cgaatggctg ccggcgcaca tcccggcgag cgcgcgcgac gcgactcagg tcgcggtcgt
      181 gcatggcgac ttccgtctcg acaacctcgt cttcgacgcc accgagccgc gcatcgtcgc
      241 cgtgctcgac tgggaactct cgaccatcgg ccacccgctc gccgacttca gctaccactg
      301 catgtcgtgg cacatcgcgc cgggttcgtc gcacgcgtcg cgcggcatcg ccgggctcga
      361 tcacgcggcg ctcggcatcc cgaccgaacg cgactacgtg cgccgctact gtgagcgcac
      421 cggccggccc gaccccgacg cggtgatggc cgactggaac ttctacctgg cctacaacct
      481 gttccgaatc gccggcatcc tgcaagggat cgccaagcgc gtcgagacgg gaacggcgtc
      541 cagcacgcag gcccgccagt cggccgcagg cgccagaccg ctggccgaaa tgggctggcg
      601 catggcccag caggcctgac ctgccgacac gatccacgac cggagacact catggacttc
      661 aactactcga accgcaccaa ggaactgcag gcgcaactgc tgcggttcat ggacgagcac
      721 atctaccccg ccgaggcttc ctacgaagcc gagatcgaag ccaacacgaa ggccggcaag
      781 cgctggacgc cgctgcagac gatcgaggcg ctgaaaccca aggcgcgagc gcaaggcctg
      841 tggaacctct ttctgccgcc gaccgcgggc ggccagagcg cggcccacac cggtcgcgac
      901 ttcgggcttt cgaacagcga ctacgcgccg ctcgccgagg tcatgggccg cgtgccctgg
      961 tcgagcgagg tcttcaactg ctcggcgccc gacaccggca acatggagac gatcgagcgc
     1021 tacggcagcc ccgagcacaa ggcgaaatgg ctggcaccgc tgctcgacgg aaagatccgc
     1081 agcgccttcg cgatgaccga gccggcggtc gcctcatccg acgcgaccaa catcgaggcg
     1141 cgcatcgagc gcgagggcga cgaatacgtc atcaacggcc gcaagtggtg gaccagcggc
     1201 gcgggcgatc cgcgctgcaa gatctacatc ttcatgggca agaccgactt cgacgcgccg
     1261 cgtcattcgc agcagtcgat ggtcctggtg ccggccgaca ccaagggcat caaagtcctg
     1321 cgcgggcttt cggtgttcgg ctacgacgac gcgccgcacg gccacatgga agtgctgttc
     1381 gagaacgtgc gcgtgccgac gagcaacatc ctgctcggcg aagggcgcgg cttcgagatc
     1441 gcgcagggcc gcctcgggcc cggtcgcatc caccactgca tgcgcctggt cggcctggcc
     1501 gagcgcgcgc tcgaactgat gtgcaggcgc gcctcctcgc gggtcgcttt cggccgcacg
     1561 atcgccgagc agggtgtcac gcgcgagcgc atcgccgagg cgcgctgccg catcgacatg
     1621 gcgcgccccc tgaccttgaa ggcggcgggg atgatggacg tcgccggcaa caagaccgcc
     1681 aaggccgaga tcgcgatgat caaggtcgtg gcgccgaaca tggcctgcga cgtgatcgac
     1741 tgggccatcc aagtgcacgg cggcggcggc gtctcggacg acttcccgct ggcgggtttc
     1801 tatgccggtg cccgcacgct gcgcttcgcc gacggccccg ac
//
LOCUS       DASVHM010000685         1927 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_698900, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000685 DASVHM010000000
VERSION     DASVHM010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_698900"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..779)
                     /locus_tag="VF308_12630"
     CDS             complement(<1..779)
                     /locus_tag="VF308_12630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437548.1"
                     /translation="MTTTHDDLLQPGLIDDPFPYYRELREQRPVHWNERWRGWIVAKY
                     DDVYKGLHDQRMLADTITPYFKTRLTPEVRERFALTYDVLNSWVVFVDPPKHTHLRRI
                     FARSFTPSTVETMRGIVESFVDEFLSSWHGRDDVDLIAEFGFLLPANVIATIIGAPRE
                     DLARFRRWSHELTELLHGGVGTPSRMDRAQETIVEFKAYLQALYDERVKHPRDDMMSW
                     LIEVQRSDLNLRPEDVLYSCMLILNAGSETTQILIGNTVAAL"
     gene            921..1691
                     /locus_tag="VF308_12635"
     CDS             921..1691
                     /locus_tag="VF308_12635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7437549.1"
                     /translation="MDCLLNGKVALVAGSSRGLGYAEASALAAEGAWVAVNGRDPAAA
                     EAAAARICGQDGRAEAFAADVTDEVAVERLVADVEAKGGSLDILVNNAGIAGPHLGKT
                     VDSIESADCAAIIASHLRSTWLCTKHPSRRMKAKRWGRIVNTSSVHYTGGGRPGVSSY
                     SAAKAAVAGFGRTVAKELGPYGITVNTIAPGYIETDMIAGYPAEFLETVRRQCPLRRL
                     GRPEEVGALVAFLCSVPAGYVTGAVICIDGGRREFTWE"
     gene            1682..>1927
                     /locus_tag="VF308_12640"
     CDS             1682..>1927
                     /locus_tag="VF308_12640"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEX7437550.1"
                     /translation="MGVKTSTPARAGTGKSVERMLIPPAGAAVTSLPRSHAELFKRRV
                     ASATICRMLCAAVESFAKKGFHASTTRDIAGKAGLSPA"
BASE COUNT          310 a          644 c          660 g          313 t
ORIGIN      
        1 agcgcggcga cggtgttgcc gatcaggatc tgcgtcgtct cgctgccggc gttgaggatc
       61 agcatgcacg aatagagcac gtcctccggg cgcaggttca gatccgagcg ctgcacttcg
      121 atcagccagc tcatcatgtc gtcgcgcggg tgcttgacgc gctcgtcgta cagggcctgc
      181 agataggcct tgaattcgac aatggtctcc tgcgcgcggt ccatccgcga cggcgtgccg
      241 acgccgccat gcagcagctc ggtcaactcg tgcgaccagc gccggaaacg agccaggtcc
      301 tcgcgcggcg cgccgatgat cgtcgcgatc acgttggccg gcagcaggaa gccgaattca
      361 gcgatcaggt cgacgtcgtc gcggccgtgc cagctgctga ggaattcgtc gacgaagctc
      421 tcgacgatgc cgcgcatcgt ctcgaccgtg ctcggcgtga acgagcgggc gaagatccgg
      481 cgcaggtgcg tgtgcttcgg cggatcgacg aacacgaccc acgaattgag cacgtcgtag
      541 gtcagcgcga agcgctcgcg gacctccggc gtgaggcgcg tcttgaaata cggtgtgatg
      601 gtatcggcga gcatccgctg atcgtgcaga cccttgtaga cgtcgtcgta cttggcaacg
      661 atccagccgc gccagcgctc gttccagtgc accggccgct gctcgcgcag ctcgcggtag
      721 tagggaaacg ggtcgtcgat cagcccgggc tggagcaggt cgtcatgggt cgtggtcatg
      781 gggtccttcg cctcgctgtc gagggcggct cgcttcgcat taagcatccg cttagttgta
      841 gtaagcctgc gcttagtcta gaatcgaccc cgtacccgtg tcaaagtttt tttgccggga
      901 tttcccttag ccgaggcgca atggactgtc tgttgaacgg caaggtcgcc ctcgtggccg
      961 gttcgagtcg cggcctcggc tatgccgaag cctcggcgct cgccgccgaa ggcgcgtggg
     1021 tcgccgtcaa cggccgcgac cccgcggcgg ccgaagcggc ggcggcgcgg atctgcgggc
     1081 aggatggtcg cgccgaggcc ttcgcggccg acgtcaccga cgaagtggcg gtcgagcgac
     1141 tggtcgccga cgtcgaggcg aaaggcggct cgctcgacat cctcgtcaac aacgcgggca
     1201 tcgccggccc ccacctgggc aagacggtcg acagcatcga gagcgccgac tgcgccgcga
     1261 tcatcgcgag ccacctgcgc tcgacctggc tctgcaccaa gcacccgtcg cgacggatga
     1321 aggcgaagcg ctggggccgc atcgtcaaca cctcgtcggt ccactacacc ggcggcggcc
     1381 ggcccggtgt ctccagctac agcgccgcga aggccgcggt ggcgggcttc ggccgcacgg
     1441 tggccaagga gctgggccct tacgggatca ccgtcaatac gatcgcgccc ggctacatcg
     1501 agaccgacat gatcgccggc taccccgcgg aattcctcga gacggtgcgg cgccaatgcc
     1561 cgctgcgccg cctcggcagg cccgaagagg tcggcgcgct ggtcgcattc ctgtgctcgg
     1621 ttccggccgg ctatgtcacc ggcgccgtga tctgcatcga cggcggcagg agagagttca
     1681 catgggagtg aagacctcga cgccggcgcg cgcgggcacc gggaaatcgg tcgaacggat
     1741 gctgatcccg cccgccggag cggccgtgac cagcctgccg cgttcgcatg ccgagctctt
     1801 caagcggcgc gtcgcctcgg ccacgatctg ccgcatgctc tgcgccgcgg tcgagagctt
     1861 cgcgaagaag ggcttccacg cctcgacgac gcgcgacatc gccggcaagg cgggcctgag
     1921 cccggcc
//
LOCUS       DASVHM010000686         2451 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1349743, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000686 DASVHM010000000
VERSION     DASVHM010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1349743"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            198..473
                     /locus_tag="VF308_12645"
     CDS             198..473
                     /locus_tag="VF308_12645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437551.1"
                     /translation="MKEYRLASWPEMPVQFQRTGHRRILGAMSHRHLTVAQLVECSGL
                     RRPDVLLFIQMLEAEGHVDIREAANAETAPRPLDWLRRALATAQDGR"
     gene            complement(485..823)
                     /gene="fdx"
                     /locus_tag="VF308_12650"
     CDS             complement(485..823)
                     /gene="fdx"
                     /locus_tag="VF308_12650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012747266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HEX7437552.1"
                     /translation="MPIIKVLPHPEYCPAGVEIEAPAGTSVCEALLENGIPIEHACEL
                     SCACTTCHVVVRAGFDSLGEPDESEEDLLDRAWGLEPTSRLSCQAILSRQDVTIEIPK
                     YSINQVKEKH"
     gene            complement(826..>2451)
                     /gene="hscA"
                     /locus_tag="VF308_12655"
     CDS             complement(826..>2451)
                     /gene="hscA"
                     /locus_tag="VF308_12655"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011805371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HEX7437553.1"
                     /translation="DPANTVLSVKRFMGRGLADIEGRSRLPYEFIDAPGMLQIRTVDG
                     VKSPVEVSAEILTKLRQRVEDTFGDDVFGAVITVPAYFDEAQRQATKDAARLANLNVL
                     RLISEPTAAAIAYGLENASEGLYAVYDLGGGTFDISLLRLTQGVFEVVATGGDSALGG
                     DDFDAALAAWALQEAGLAAETPQDKRAVLVAARATKEKLSTHEHAELACPLAGGELAV
                     RVTRERFEAIGGALLARTIAAVGKVLRDARAVKNEVNGVVLVGGSTRMPMVQAAVGSF
                     FGQAPLTNVNPDEVVALGAAIQANALAGNAGADELLLLDVIPLSLGLETMGGLVERII
                     PRNSTIPTARAQDFTTFKDGQTAIAIHVLQGERELVADCRPLGRFELRGIPPMVAGAA
                     RIRVSFEVDADGLLSVRARELASNVEASITVKPSYGLSDDEIARMLTESFSRAEEDMV
                     ERSLRESRVDAERMLLATRSAIAADGDLLAASERAAIDALMARLEGVRESSDHHAIDA
                     AVEALAKGTEGFAAERMNRGIRRALSGRRVEDV"
BASE COUNT          395 a          850 c          813 g          393 t
ORIGIN      
        1 cgaagtgagg cgagccctgc atgagctcga tgcctgagca cgaacgggag aggccgcgtc
       61 tgcaatcccg ccaagtgtcg gaaaaatcac gaagacactg cacgacgccc ttcacgagcg
      121 gcgcgcaaac gcctaccctg ctcctccccg caccacgttt gccctggcgc cgccaacggc
      181 acgattgcct cagccccatg aaagagtacc gcctcgcgtc ctggcccgaa atgccggtcc
      241 agttccagcg taccgggcat cggcgcattc tcggcgccat gtcgcatcgc catctgacgg
      301 tcgcgcagct ggtcgagtgc agtggactgc ggcgcccgga cgtgctgctg ttcatccaaa
      361 tgctcgaagc cgagggccat gtcgacattc gcgaggcagc gaacgccgaa accgcgccgc
      421 ggccgctcga ctggttgcgc cgcgcattgg ccaccgccca ggacggccgc tgagcgcgca
      481 ggcgtcagtg cttttccttg acctggttga tcgagtactt tgggatctcg atcgtcacat
      541 cctgccttga caggatcgcc tgacaggaaa gcctcgacgt aggctccaga ccccaggcgc
      601 ggtcgagcag atcctcctcg ctttcgtcgg gttcgccgag cgaatcgaag ccggcgcgca
      661 cgaccacgtg gcaggtggtg caggcgcagc tcagttcgca ggcatgctcg atcgggatgc
      721 cgttttcgag cagcgcttcg cacaccgagg tgcccgccgg ggcctcgatc tcgacaccgg
      781 ccggacaata ttcggggtgc ggcaggacct tgatgatcgg catcgtcaga cgtcctcgac
      841 gcggcgcccg gacagggcgc gacggatgcc gcggttcatg cgctcggcgg cgaagccctc
      901 ggtccccttg gccagcgcct cgaccgcagc gtcgatcgca tggtgatcgc tgctttcgcg
      961 cacgccctcc aggcgcgcca tcaacgcatc gatcgcggcg cgctcggacg ccgcaaggag
     1021 atcgccatcg gccgcaatgg ccgagcgcgt cgcgagcagc atgcgctcgg cgtcgacgcg
     1081 cgattcgcgc agactgcgct cgaccatgtc ttcctcggcg cgactgaagc tctcggtcag
     1141 catgcgggcg atctcgtcgt cggagaggcc atagctcggc ttcaccgtga tcgacgcctc
     1201 gacgttggaa gcaagttcgc gcgccctgac gctgagcagc ccatcggcat cgacctcgaa
     1261 actgacccgg atgcgcgcag cgcccgccac catcggcgga atgccgcgca gttcgaagcg
     1321 cccgagcggc cggcagtcgg cgaccagttc gcgctcgccc tgcagcacgt ggatcgcgat
     1381 cgccgtctgg ccatccttga acgtggtgaa gtcctgggcg cgcgcggtcg ggatcgtgct
     1441 gttgcgcgga atgatgcgtt cgaccaggcc gcccatggtt tcgaggccga gggaaagcgg
     1501 aatcacatcg aggagcaaca actcgtccgc gcccgcgttg cccgcgagcg cattggcctg
     1561 gatcgccgcg ccgagcgcga ccacctcgtc gggattcacg ttggtgagag gcgcctgccc
     1621 gaagaagctg ccgaccgcgg cctgcaccat gggcattcgc gtcgaaccgc cgacgagcac
     1681 gacgccattg acctcgttct tgacggccct ggcatcgcgc aggaccttgc cgaccgcggc
     1741 gatcgtgcgt gcgagcagcg ccccgccgat cgcctcgaag cgctcgcgcg tcacccggac
     1801 cgccagttcg ccgcccgcca atggacaggc cagttccgca tgctcgtgcg tgctcagctt
     1861 ttccttggtg gcccgggcgg cgaccaggac ggcgcgcttg tcctgcggcg tctcggccgc
     1921 gagcccggcc tcctgaaggg cccaggccgc gagcgcagca tcgaagtcgt cgccgccgag
     1981 ggccgagtcg ccgccggtcg cgacgacctc gaacacgccc tgcgtcaggc gcagcagcga
     2041 gatgtcgaag gtgcccccgc cgaggtcgta gaccgcgtag aggccttcgg aggcgttttc
     2101 gagtccgtag gcaatcgcgg cggcggtggg ctcgctgatg aggcgcagga cgttcaggtt
     2161 ggccagacgg gcggcgtcct tggtggcctg gcgctgggcc tcgtcgaaat acgccggcac
     2221 cgtgatgacg gcgccgaaca catcgtcgcc gaatgtgtct tcgacgcgct ggcgcagctt
     2281 cgtgaggatc tcggccgaga cctcgaccgg cgatttgacg ccgtcgacgg tccggatctg
     2341 cagcatgccc ggtgcgtcga tgaactcata aggcagcctc gatcgccctt cgatgtccgc
     2401 aaggccccgg cccatgaagc gcttgaccga aaggaccgtg ttggccgggt c
//
LOCUS       DASVHM010000687         6904 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_121294, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000687 DASVHM010000000
VERSION     DASVHM010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6904
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121294"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            358..714
                     /gene="clpS"
                     /locus_tag="VF308_12660"
     CDS             358..714
                     /gene="clpS"
                     /locus_tag="VF308_12660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HEX7437554.1"
                     /translation="MPDDKPDSPVTPIRRARPDDGQGAVVVERQAAKTVPPRMYQVVL
                     LNDDYTPMEFVVMVLQEYFKRDLETATQIMLKIHHDGRGVCGVYSKDVAATKVELVVA
                     AARRGGHPLQCIMEAA"
     gene            711..3014
                     /gene="clpA"
                     /locus_tag="VF308_12665"
     CDS             711..3014
                     /gene="clpA"
                     /locus_tag="VF308_12665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0043335 - protein unfolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HEX7437555.1"
                     /translation="MIAQELEVSLHMAFVEARQQRHEFITVEHLLMALLDNPSAAEVL
                     RACSANNDDLRKSLLAFIKENTPTVGGADEVDTQPTLGFQRVIQRAIMHVQSTGSGKK
                     EVTGANVLVAIFGEKDSHAVYYLHQQGVTRLDVVNFIAHGIRKSDSPEPAKPGEASPG
                     TESEKEEGEGKGSPLDQFTQNLNQLARDGKIDPLIGREHEVERVIQILCRRRKNNPLL
                     VGEAGVGKTAIAEGLAWRITQAEVPEVLAGSVVYSLDMGALLAGTKYRGDFEQRLKGV
                     LKQLKDQPNAILFIDEIHTLIGAGAASGGTLDASNLLKPALGSGAMKCIGATTFTEYR
                     GIFEKDAALSRRFQKVDVVEPSVEQTIEILKGLKTRFEEHHSVKYALGALQAAAELSA
                     KFINDRHLPDKAIDVIDEAGAAQRILPKNKQKKTITRSEVEDIVAKIARIPPASVSND
                     DRSKLKTLDRDLNSVVFGQEPAIEALSAAIKMARSGLGRPDKPIGCFLFSGPTGVGKT
                     EVAKQLAYILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAISKKPHAV
                     LLLDEIEKAHPDVFNVLLQVMDHGTLTDNNGRKADFRSVIIVMTTNAGAEALSKTTIG
                     FTNSREHGDEMGDIKRMFTPEFRNRLDAIVSFKPLDEEVILRVVDKFLLQLESQLGEK
                     KVEVTFTDGLRKQLAKKGFDPQMGARPMQRLIQDTIRRALADELLFGRLVDGGRLTVD
                     VDAEGKPVLDIQPAKRSDKPKAESATA"
     gene            complement(3031..3852)
                     /locus_tag="VF308_12670"
     CDS             complement(3031..3852)
                     /locus_tag="VF308_12670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent peptidase"
                     /protein_id="HEX7437556.1"
                     /translation="MRDWPQRWARWRRARTLERHAIPDDLWQATLEHFPFLLRRSPGD
                     LTRLRELATLFLTRKEFSGAGGMEVTDAMAVAVAAQACVPVLELGLECYDGFVGIVVH
                     PDAVAARREIVDDAGVVHHYVEELSGEAMDGGPLMLSWSDVAEAGSSAAWGYNVVIHE
                     FVHVLDLHAARAGIKGRAGSASWSQRLGVEYERFAARVDAGADTLLDPYGAEAIEEFF
                     AVAAEAFFVAPTEVRGEEPALYDLLVEFFRQSPADAPPSSGDPETKEKGSRSSLC"
     gene            complement(3854..4651)
                     /locus_tag="VF308_12675"
     CDS             complement(3854..4651)
                     /locus_tag="VF308_12675"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019574425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEX7437557.1"
                     /translation="MTPAAGRPATVVAPASWRAIDFISDLHLTDETSRAFALWADYLH
                     GTNADAVFILGDLFEVWVGDDARFEGFEARSAAVLADAAARRPIAFMAGNRDFLLGSA
                     MLEACGVAALADPTLLCAFGERVLLSHGDAMCIDDVSYQAFRQVVRGAAWQCDFLARP
                     LAERRAMAYALRAESERHKAAQPAGSWFDVDSRTALEAMESAAAPALIHGHTHRPGSA
                     ELAPGRWRHVLSDWELDGAGHPRAEVLRWQSTGFVRLTPGQAMAAAA"
     gene            complement(4668..5171)
                     /locus_tag="VF308_12680"
     CDS             complement(4668..5171)
                     /locus_tag="VF308_12680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013522354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX7437558.1"
                     /translation="MAQQVELQTSKGNVKIELDEARAPESARNFVEHVKMGHYDGTVF
                     HRVIKGFMIQGGGFEPGMKQKPTGAPIRNEANNSLKNERYTLAMARTSDPHSATAQFF
                     INAADNEFLNFKSESPQGWGYAVFARVIEGADVVDAIEKVETGSKAGHGDVPLEDVTI
                     LRATLLP"
     gene            complement(5173..5733)
                     /locus_tag="VF308_12685"
     CDS             complement(5173..5733)
                     /locus_tag="VF308_12685"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011402213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX7437559.1"
                     /translation="MRHPLARWTAAAITAVALGTSFCAHAQKVKLETTAGDIVIELDP
                     AKAPKSVDNFVQYVKAGHYDGTIFHRVIANFMIQGGGMTADRREKATRAPIPLESRNG
                     LVNTRGTVAMARTMDPNSATAQFFINVKDNDFLNAAQSRDGNGYAVFGKVTSGMEVVD
                     KIRNAPTGPGDFPNDPVVIKRATVEK"
     gene            complement(5771..6337)
                     /locus_tag="VF308_12690"
     CDS             complement(5771..6337)
                     /locus_tag="VF308_12690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013900862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7437560.1"
                     /translation="MTRRSFPLAMLWMIALAGTLFAAFADELGEVTRLQHAGQTAAAL
                     ERADQFLATHPKDAQMRFHKAVILGDARRTLEAIAVLEQLTEDYPGLAEPYNNLAALY
                     AARGDYAMARAALEQALRLKPAYATAHENLGDVYAALAGQSYATALRLDPDRGGVPAK
                     LALMRQLAASNAALPSPLPAAATPAVSR"
     gene            6563..>6904
                     /locus_tag="VF308_12695"
     CDS             6563..>6904
                     /locus_tag="VF308_12695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX7437561.1"
                     /translation="MTLRIHNSLSRAVEPFTPIEPNRVRMYVCGMTIYDLCHMGHARF
                     LMAFDMVQRWLRTLGFQVTYVRNITDIDDKIIRRALERGIPIRQLTDEMIAAMHADLG
                     ALGIARPTHEPR"
BASE COUNT         1208 a         2283 c         2297 g         1116 t
ORIGIN      
        1 agttcgatgg aacgctcgat cctgtcgaag aaggtgacgt acgactttgc ccggctgatg
       61 gagggggcga cccaggtgtc gtgctcgggc ttcgggcaag tcatgatcga ccacatgtga
      121 ggtccgcgag cccggcgagt cgcgcccggg aaaaggcctg ccgtccgcag gccttttttt
      181 tcgcctgtgc ggatcgtcgg caggcacgca caaggttctt ccggcatgct gcgaagcgca
      241 ggccaattcg cgcgtcagcg gggtgtcacg ggggcatttc ggcccttgtg aaatagtccg
      301 caagcgcaat atgcatgcgg atcgtgtgcg aggacgtcaa ctcgatagaa tgaatccatg
      361 ccagacgaca agcccgactc ccccgtgacg ccgatccggc gggccaggcc cgacgacggg
      421 cagggagccg ttgtggtcga gcgccaggcc gcgaagacgg tgccgccgcg catgtatcag
      481 gtggtgctcc tcaacgacga ctacacgccg atggagttcg tggtgatggt gctgcaggag
      541 tatttcaaac gcgacctcga aaccgcaacc cagatcatgt tgaagatcca tcatgacggg
      601 cgcggcgtct gcggcgtcta ttcgaaggat gtcgccgcga cgaaagtcga actggtggtg
      661 gcggccgcgc gtcgcggcgg ccacccgttg caatgcatta tggaggccgc atgattgcgc
      721 aagagctaga agtcagcctg cacatggcgt tcgtcgaggc gcgccagcag cgccacgaat
      781 tcatcacggt cgagcacctg ctgatggcgc ttctcgacaa cccttccgcg gccgaagtgc
      841 tgcgcgcctg ttccgccaac aacgacgacc tgcgcaagag tctgctcgcg ttcatcaagg
      901 aaaacacgcc gacggtgggc ggggccgacg aggtcgacac gcagccgacg ctcgggttcc
      961 agcgtgtgat ccagcgcgcg atcatgcacg tgcagtcgac cgggagcggc aagaaggaag
     1021 tcaccggcgc caacgtgctg gtggcgatct tcggcgagaa ggattcgcac gccgtctatt
     1081 acctgcacca gcagggcgtc acgcgcctgg acgtcgtcaa tttcatcgcc cacggcatcc
     1141 gcaagagcga ttcgcccgag cccgcgaagc cgggcgaggc aagcccgggc accgaaagcg
     1201 agaaggaaga gggcgaaggc aagggctcgc cgctcgacca gttcacgcag aacctgaacc
     1261 agctcgcccg cgacggcaag atcgatccgc tgatcgggcg cgagcacgaa gtcgagcgcg
     1321 tgatccagat cctgtgccgg cggcgcaaga acaatccgct cctggtcggc gaggccggcg
     1381 tcggcaagac cgcgatcgcc gagggcctgg cctggcgcat cacccaggcc gaagtgcccg
     1441 aggtgctcgc cggctcggtc gtctattctc tcgacatggg cgcgttgctc gcgggtacca
     1501 agtaccgcgg tgacttcgaa cagcgcctga agggcgtgct caagcagctg aaggatcagc
     1561 cgaacgcgat cctcttcatc gacgagatcc acaccctgat cggcgcgggc gccgcgtcgg
     1621 gcggcacgct cgacgcgagc aatctgttga agccggccct cggctcgggc gcgatgaagt
     1681 gcatcggtgc gaccaccttc accgagtacc gtggcatctt cgagaaagac gcggcgctgt
     1741 cgcggcgctt ccagaaggtc gacgtcgtcg agccttcggt cgaacagacg atcgaaatcc
     1801 tgaaggggct gaagacgcgc ttcgaggagc accacagcgt gaagtacgcg ctcggcgcgt
     1861 tgcaggccgc cgccgaactc tcggccaagt tcatcaacga ccggcacctg cccgacaagg
     1921 cgatcgacgt gatcgatgag gccggtgccg cgcagcgcat cttgcccaag aacaagcaga
     1981 agaagacgat cacgcgctcc gaagtcgagg acatcgtggc gaagatcgcg cgcatcccgc
     2041 ccgcgagcgt gtccaacgac gaccgctcga agctgaagac gctcgaccgc gacctgaaca
     2101 gcgtggtgtt cggccaggag cccgcgatcg aagcgctctc cgccgccatc aagatggccc
     2161 gttccgggct cggccggccc gacaagccga tcggctgctt cctcttcagc ggcccgaccg
     2221 gcgtcggcaa gaccgaggtc gccaagcaac tcgcctacat cctcggcatc gagctgatcc
     2281 gcttcgacat gagcgagtac atggaacgcc atgcggtcag ccgcctgatc ggcgcgccgc
     2341 cgggttacgt gggcttcgac caggggggcc tcctcaccga agcgatctcg aagaagccgc
     2401 atgcggtgct gctgctcgac gagatcgaga aggcgcaccc cgatgtcttc aatgtgctgc
     2461 tgcaggtcat ggaccatggc acgctgaccg acaacaacgg tcgcaaggct gacttccgca
     2521 gcgtgatcat cgtcatgacc acgaacgcgg gtgccgaggc gctgagcaag acgacgatcg
     2581 gctttaccaa ttcgcgcgag cacggcgacg agatgggcga catcaagcgc atgttcacgc
     2641 ccgagttccg caaccggctc gacgcgatcg tgagcttcaa gccgctcgac gaagaggtca
     2701 tcctgcgcgt ggtcgacaag ttcctgctgc agctcgaaag ccagctcggc gagaagaagg
     2761 tcgaggtcac cttcaccgac ggcctgcgca agcagctcgc gaagaagggt ttcgatccgc
     2821 agatgggcgc ccggccgatg cagcgcctga tccaggacac gatccggcgc gcgctcgccg
     2881 acgagttgct gttcgggcgc ctcgtcgatg gcgggcgact tacggtcgac gtcgacgccg
     2941 agggcaagcc cgtcctcgac atccagcccg ccaagcgcag cgacaaaccg aaggccgagt
     3001 cggcgacggc ctgaccgcgc cccggcgccg tcagcaaagg gagcttcggc tccctttttc
     3061 tttcgtttcc gggtctccgg acgacggtgg tgcatcggcc ggactctgcc ggaagaattc
     3121 aacgagcagg tcgtagagcg ccggctcctc accccggact tcggtcggcg cgacgaagaa
     3181 ggcttcggcc gcgacggcga agaactcctc gatcgcctcg gcgccgtacg ggtcgagcag
     3241 cgtgtccgcg ccggcatcga cgcgcgccgc gaaacgctcg tattcgacac cgagccgttg
     3301 cgaccacgac gcgctgccgg ccctgccctt gatgccggcg cgggcggcat gcaggtcgag
     3361 cacatggacg aattcgtgga tcacgacgtt gtagccccac gccgcggagg agccggcttc
     3421 ggccacgtcg ctccaggaga gcatcagcgg gccgccatcc atcgcctcgc cggaaagctc
     3481 ctcgacgtag tgatgaacca cgccggcgtc atcgacgatc tcgcggcgcg ccgcgacggc
     3541 gtccggatgg acgacgatgc cgacgaagcc gtcgtagcac tcgagaccga gctcgagcac
     3601 cggcacgcac gcctgcgccg cgactgcgac cgccattgca tcggtgactt ccatcccacc
     3661 ggcgccggag aactccttgc gcgtgagaaa aagggtggcg agttcgcgca ggcgcgtcag
     3721 atcgccgggg ctgcggcgaa gcaggaaggg aaagtgctcg agcgtggcct gccacagatc
     3781 gtccgggatc gcgtgccttt cgagcgtgcg cgcgcgtcgc cagcgcgccc agcgctgcgg
     3841 ccagtcgcgc atgtcaggcc gcggcggcca tcgcttggcc gggggtcagg cggacgaagc
     3901 cggtggactg ccagcgcagc acctcggcgc gcgggtgccc ggcaccatcg agctcccagt
     3961 cgctcaggac gtggcgccag cgcccgggcg caagctccgc gcttcccggt cgatgggtgt
     4021 ggccgtggat caacgccggt gcagcggcgc tctccatcgc ttcgagcgcg gtccggctgt
     4081 cgacgtcgaa ccacgagccg gccggttgtg ccgccttgtg gcgttcgctt tcggcgcgca
     4141 gggcgtacgc catcgcccgg cgctcggcca gaggccgggc gaggaaatcg cattgccagg
     4201 ccgcaccgcg cacgacctgg cggaacgctt ggtacgacac gtcgtcgatg cacatcgcat
     4261 cgccgtggga gagcaacacc cgctcgccga aggcgcagag cagcgtcgga tcggcgagcg
     4321 ccgcgacgcc gcacgcctcg agcatggcgc tgccgaggag aaagtcccga ttgccggcca
     4381 tgaaggcgat cggccggcgc gccgccgcgt cggcgagcac cgcggcgctg cgtgcctcga
     4441 agccttcgaa ccgcgcgtcg tcaccgaccc agacctcgaa cagatcaccg aggatgaaga
     4501 ccgcatcggc gttcgtcccg tgcaggtaat cggcccagag ggcgaacgca cgggacgtct
     4561 cgtcggtgag atgcaggtcg ctgatgaaat cgatggcccg ccaggaggcg ggcgcgacca
     4621 ccgtcgcggg ccggcctgcc gctggcgtca cgaccggccg cctgcgttca gggcagcaaa
     4681 gtggcgcgca agatcgtgac gtcttcgagc ggcacgtcac cgtggccggc cttgctgccg
     4741 gtctcgacct tttcgattgc gtcgacgacg tcggcgccct cgatcacccg ggcgaacacc
     4801 gcatagcccc agccctgcgg cgattcggat ttgaagttca ggaactcgtt gtcggcggca
     4861 ttgatgaaga actgggcggt cgccgagtga ggatccgacg tccgcgccat cgccagcgtg
     4921 tagcgctcgt tcttcaggct gttgttggct tcgttgcgga ttggtgcacc ggttggcttc
     4981 tgcttcatcc cgggctcgaa cccgccgccc tgaatcatga agcccttgat gacgcggtgg
     5041 aacaccgtgc cgtcgtagtg gcccattttc acgtgctcca cgaagttgcg tgccgactcg
     5101 ggcgccctgg cctcgtcgag ctcgatcttc acgttgccct tgctggtttg cagttcgacc
     5161 tgttgcgcca cgtcacttct ccacagtcgc tcgtttgatc accaccggat cgttcgggaa
     5221 atcgcccggc ccggtcggcg cgttgcggat cttgtcgacc acctccatcc cggacgtgac
     5281 cttgccgaac acagcatagc cgttgccgtc gcgcgattgc gccgcattca ggaagtcatt
     5341 gtccttgacg ttgatgaaga actgggccgt cgccgagttc gggtccatgg tgcgggccat
     5401 cgccacggtg ccgcgcgtgt tcacgaggcc gttgcggctc tcgagcggga tcggggcgcg
     5461 cgtggccttt tcgcggcgat cggccgtcat gccgccgccc tggatcatga aattggcgat
     5521 gacccgatgg aagatcgtgc cgtcgtagtg gccggccttc acatactgga cgaagttgtc
     5581 gacgctcttc ggcgccttgg ccggatcgag ctcgatgaca atgtcgccgg ccgtggtctc
     5641 gagcttgact ttctgcgcgt gggcgcaaaa gctggtgccg agcgcgacgg ccgtgatggc
     5701 ggcagcggtc cagcgggcaa gggggtgacg cattcgatga ctcctttgcg gggtgggttc
     5761 agggtgaatc tcagcgcgac accgccggcg tcgccgcagc gggcaaaggc gagggcagcg
     5821 cagcattcga cgcggcgagt tgtcgcatca gggcgagctt ggcaggcacg cccccgcgat
     5881 cgggatcgag tcgcagcgcc gtcgcatacg actgaccggc gagagccgca tacacatcgc
     5941 cgagattctc gtgcgcggtc gcgtaggcgg gcttgagccg cagcgcctgc tcgagggcgg
     6001 cgcgcgccat cgcgtagtcg ccccgtgccg cgtaaagggc ggcgaggttg ttgtacggct
     6061 cggccagacc ggggtagtcc tcggtcagct gctcgagcac cgcgatggct tccagcgtgc
     6121 gccgtgcgtc gccgaggatc acggccttgt ggaaacgcat ctgcgcgtcc ttcggatgcg
     6181 tggccaggaa ttgatcggcc cgttccagcg ccgcggccgt ctgaccggcg tgctggagcc
     6241 gtgtcacttc gccgagttcg tccgcgaaag cggcgaagag ggtgccggcc aacgcgatca
     6301 tccacagcat ggcgagcggg aacgaacgac gggtcatctg tttttcgaac actttgcgtc
     6361 aggcctgccg aaggttcgac agcgcctctg tcgccctgcg gaagaggccc gctatactga
     6421 ttcgattgta gttcaggccc ctgcgcgagc gacctgccgc gggccgggcg cagcgcacca
     6481 acccgcccct cgaccctccc tctcgacctc gacccgcatc cgtgccgcct cgccaaacga
     6541 gacgccaccg cccattcggc tgatgactct tcgcatccac aattcgctct cccgggccgt
     6601 cgaaccgttc acgccgatcg agccgaaccg cgtccgcatg tatgtctgcg gcatgacgat
     6661 ctacgacctc tgccacatgg ggcatgcgcg cttcctgatg gcgttcgaca tggttcagcg
     6721 ctggctgcgc acgctcggtt tccaggtcac gtatgtgcgc aacatcaccg atatcgacga
     6781 caagatcatt cgccgggcgc tggagcgcgg tattccgatc cgccaactca ccgacgagat
     6841 gattgccgcg atgcacgccg acctcggagc gctgggcatc gcccggccga cgcacgagcc
     6901 gcgc
//
LOCUS       DASVHM010000688         2952 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1060215, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000688 DASVHM010000000
VERSION     DASVHM010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1060215"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1314
                     /locus_tag="VF308_12700"
     CDS             <1..1314
                     /locus_tag="VF308_12700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007837722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEX7437562.1"
                     /translation="RFGPVRLFVASIVLFVFASWLCGLAPNIDMLIAFRVLQGFVAGP
                     MIPLSQTLLLSSYPRAKAGTAMAMWAMTVLVAPVAGPLLGGWITDNISWPWIFYINIP
                     VGLIAAAITWSIYRKRDPGSRKSPFDYIGLALLVIWIGAMQIMIDKGKELDWFGSTQI
                     VVLATVAVVGFAFFLAWELTEEHPIVDLRLFARRNFLMGTLALSVAYGLFFGNVVLLP
                     LWLQQYMGYTATWAGLATAPVGILAIIISPWVGKNVARIDPRKLATVAFLGFAFVLVM
                     RSYFNVQADFRTILIPTVLQGAAMAFFFIPLQAIIFSGLTPDRMPAAAGLSNFVRITA
                     GAMGTSLFTTAWEDRAVLHHAQLSESMGTASAAATATLDRLGAAGYSHEQALGTINRM
                     VDQQAYTLAVNDLFLLSAVVFVVLVGMLWLTRPQLGVAVDAAGAH"
     gene            complement(1321..2397)
                     /locus_tag="VF308_12705"
     CDS             complement(1321..2397)
                     /locus_tag="VF308_12705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carotenoid 1,2-hydratase"
                     /protein_id="HEX7437563.1"
                     /translation="MRRRSMVLSLLGSALSSSALAGPDDKPGPLHFPSDFGAHPQSRT
                     EWWYATGSLQAEARLYGFQITFFRTTTGVAADHPSRFAASQLVFAHAALTDLDARRLR
                     HDERIARGGFGVAAAATGDTNVVLRDWTLERTGSVERSRYLAHLASARAGFAFDLSLE
                     TTQPLLLQGIGGVSQKGPRPRESSRYYSQPQLAVAGALTLDVKTAPVHGRAWLDHEWS
                     DAFLDTEAVGWDWIGMNLDDGSALTAFRLRRRDGSALYAGGSWRRPGETTRNFGPAEV
                     AFETGRLWTSQASKASYPIDWAIATPVGRFIVKALQDDQELDSRASTGAIYWEGLSDL
                     FDARGERVGRGYLEMTGYAMPLTL"
     gene            2652..>2952
                     /locus_tag="VF308_12710"
     CDS             2652..>2952
                     /locus_tag="VF308_12710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018059112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437564.1"
                     /translation="MSFFVSSRGGGNGANLGGLEGADRLCQSLATAAGAGGRTWHAYL
                     SATASGGAPAVNARDRIGRGPWRNANGVVIANDLAQLHGTNNLTKQTALTERGEVV"
BASE COUNT          419 a         1026 c         1008 g          499 t
ORIGIN      
        1 cgcttcggtc cggtgcgact tttcgtcgcc agcatcgtcc tgttcgtctt cgcctcgtgg
       61 ctgtgcggcc tcgcgcccaa catcgacatg ctgatcgcgt tccgggtgct gcagggcttc
      121 gtcgccgggc cgatgatccc gctctcgcag acgctgctgc tgtcgagcta tccgcgcgcc
      181 aaggcgggca ccgcgatggc gatgtgggcg atgacggtgc tggtcgcgcc cgtcgccggg
      241 ccgcttctgg gcggctggat caccgacaac atctcctggc cgtggatctt ctacatcaac
      301 atcccggtcg gcctgatcgc cgcggcgatc acctggtcga tctatcgcaa gcgcgatccc
      361 ggctcgcgca agtcgccgtt cgactacatc ggcctggcgc tgctcgtgat ctggatcggc
      421 gccatgcaga tcatgatcga caagggcaag gagctcgact ggttcggctc gacgcagatc
      481 gtcgtcctcg ccaccgtcgc ggtcgtcggc ttcgcgttct tcctcgcctg ggagctcacc
      541 gaggagcacc cgatcgtcga cctgcgcctg ttcgcgcgcc gcaacttcct gatgggaacc
      601 ctggcgctct cggtcgccta cggcctcttc ttcggcaacg tcgtcctgct gccgctctgg
      661 ctgcaacagt acatgggcta caccgcgacc tgggccgggc tggcgacggc gccggtcggc
      721 atcctcgcga tcatcatctc gccgtgggtc ggcaagaacg tcgccaggat cgatccgagg
      781 aagctcgcga ccgtcgcctt cctcggtttc gccttcgtcc tcgtcatgcg ctcgtacttc
      841 aacgtgcagg ccgacttccg aaccatcctc atcccgaccg tgctgcaggg cgcggcgatg
      901 gcgttcttct tcatcccgct gcaggccatc atcttctcgg ggctcacgcc cgaccggatg
      961 ccggccgcgg cgggcctgag caacttcgtg cgcatcaccg ccggcgcaat gggcacctcg
     1021 ctctttacga cggcgtggga agaccgggcc gtgctgcacc acgcgcagct gagcgaatcg
     1081 atgggtaccg ccagcgcagc ggcgacggcg acgctggatc gactcggcgc ggccggctac
     1141 tcgcacgagc aggcgctcgg caccatcaat cgcatggtcg accagcaggc ctacacgctc
     1201 gcggtgaacg atttgttcct gctctcggcg gtggtgttcg tggtgctggt cggcatgctg
     1261 tggttgacgc ggccgcaact cggcgtcgcg gtcgacgccg ccggcgcgca ctgaatccgg
     1321 tcagagcgtg agcggcatgg cgtatcccgt catctcgaga tagccgcgac cgacgcgctc
     1381 gccgcgcgcg tcgaacaggt cgctcaggcc ctcccagtag atcgcgccgg tgctcgcgcg
     1441 gctgtcgagt tcctggtcgt cctgcagcgc cttgacgatg aagcggccga ccggcgtcgc
     1501 gatcgcccag tcgatcgggt agctcgcttt tgacgcctgg ctggtccaca gccgtcccgt
     1561 ctcgaaggcg acctcggccg gcccgaaatt gcgcgtcgtc tcgcccggcc ggcgccagct
     1621 gccgccggcg tagagggcgc tgccgtcgcg gcggcgcagg cggaaggcgg tgagggccga
     1681 gccgtcgtcg aggttcatgc cgatccagtc ccagccgacg gcttcggtgt cgaggaaggc
     1741 gtcgctccat tcgtgatcga gccaggcgcg gccgtgcacc ggcgcggtct tgacatccag
     1801 cgtcagcgcg ccggcgaccg cgagttgcgg ctggctgtag tagcggctcg actcgcgcgg
     1861 ccgcggtccc ttttgcgaga cgcctccgat gccctggagc agcagcggct gcgtcgtctc
     1921 caggctcaag tcgaaggcga agccggcgcg cgcactcgcc aggtgcgcga ggtagcggct
     1981 gcgctcgacg cttcccgtgc gctcgagggt ccagtcgcgc agcaccacgt tcgtgtcgcc
     2041 tgtggccgcg gcggcgacgc cgaagccgcc gcgcgcgatg cgctcgtcgt ggcgcaggcg
     2101 gcgcgcgtcg agatcggtga gggcggcgtg cgcgaacacg agctggctcg ccgcgaagcg
     2161 gctgggatgg tccgcggcga cgccggtcgt ggtgcggaag aacgtgatct gaaagccgta
     2221 cagccgggct tcggcctgca ggcttccggt cgcgtaccac cactcggtgc ggctctgcgg
     2281 atgcgcgccg aaatcggacg ggaagtgcaa ggggccgggc ttatcgtccg gcccggcgag
     2341 cgccgacgaa gacagcgccg aaccgagcaa cgacaggacc atggaacggc ggcgcatgcg
     2401 ccagcatcgc acatctgcgg cgcctgaaat ttcagcgacc ccatcccccg cgctgctcgg
     2461 gacatgccgc ttgaagtggc tttcgctttc cactaggctc gtcggtcgcc gatcgtgatc
     2521 ggtgccggcc ccgaaacccg actcaaggaa gcaatatgcg actctcgaac aggaaatggc
     2581 ccttgctggc cacggctgcg gtcatcttcg tcctcgccgc gtgcgcgagt tcgccggcgg
     2641 tgaagaacga catgagcttc ttcgtgtcga gcaggggcgg cggcaacggc gccaatctcg
     2701 gcgggctgga gggcgccgat cgcctgtgcc agtcgctggc gaccgcggcg ggggcgggcg
     2761 ggcgcacctg gcacgcctac ctcagcgcga cggcatccgg cggcgctccc gccgtgaatg
     2821 cgcgcgaccg catcggccgc gggccgtggc gcaatgccaa tggagtggtg atcgcgaacg
     2881 atctggccca gctgcacggc accaacaacc tcaccaagca gaccgcgctc accgagcgcg
     2941 gcgaagtcgt ca
//
LOCUS       DASVHM010000689         3962 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_335978, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000689 DASVHM010000000
VERSION     DASVHM010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3962
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335978"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2195)
                     /locus_tag="VF308_12715"
     CDS             complement(<1..2195)
                     /locus_tag="VF308_12715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437565.1"
                     /translation="MATHGDAALPLDFEDAGGSSGVDKDQAAYQTVRDAVQKLVDGLN
                     AHPQKAKIAAQIGQAVAKLVAADGHAAKKEWKEIRVVLGEAKTICVAAKKLADDWDNY
                     AKKRAATMAIILAFKTTPNSVKAATDLVTINADGFANSSPPDFANALKILKQIDDNRK
                     PGLATFVKDLKTRLKTVEAADAKLKGYLKPALDEARPLVAESEKALADGEFSLCRQAG
                     ISALRSLGPAERRAGRRSEYDTQRAATVKAVEAVRAAPAVADRAKALDALVTKADALA
                     AADTLKIEEGVQVLADAKKRSEVWSGLAKTIATVGSERKLAETDLAALDKHAAAARIA
                     TEREAIRKLLADAKNFATLADGAPDPAQGWNSALTNVTRAHADLAVAKKLADGMGVAA
                     SAETAAGKPGDIAGMKAALAKLRADGKVASKAASAAAADAEFKRFEVQATAAEKALAA
                     NDGKAAATALAAAAKELIAAKTIQAEHGEFQTTLASVEAQLKKLQTSPRAAQIKARID
                     PVAKSLADAKAADKSGKGPEAIATLRAANDAVAAANKADKDRATFDTRTDAAAKRVAA
                     TKDVAAKNALQTAIADAKKLADALRFDDAAKAIQQVEVKLDKAKLDGLMTAAKPDQAA
                     ITKLAAAMAGNGGEKTVDAMIQAIPDHGSVDLLSALATGRYGVKFTSDKSTMGAGADP
                     AKAMKLVCDMFSKIPQDIVKNKSIANVAYSDLQGGISAGHSYATAEITM"
     gene            2648..3061
                     /locus_tag="VF308_12720"
     CDS             2648..3061
                     /locus_tag="VF308_12720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437566.1"
                     /translation="MPEHIGEWKRVGLGTPVPSSDYEMDPVMRAQYARGNERADVEVV
                     DLGTAGVTAAKAPMPDASAGPQTESGTAQVYQSKRRLIREEHDRETGIGSVSVNLRNG
                     LNVRISGRGLDGPALKTLIDGVDIAGTEALRRGAR"
     gene            3186..>3962
                     /locus_tag="VF308_12725"
     CDS             3186..>3962
                     /locus_tag="VF308_12725"
                     /inference="COORDINATES: protein motif:HMM:NF022738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3095 family protein"
                     /protein_id="HEX7437567.1"
                     /translation="MGINSGHAEDQVSGFFASLPLLKSARDTFDKAQYRPAPDEWALV
                     ITDIVDSTIAIANGRHKTVNFVAAMAIAALKNLCAPESIPFLFGGDGAVVMVPPRRAA
                     QARLELARVRGQAAREFGLALRVGLIPVGELRRFGSDVRVGRYEPSPGNSFGVFLGGG
                     VGLLEAAVRGRGDPELIVRAAIPESLDDSAPVDLSGLSCRWDALRSKRGKMVTLIIHG
                     AADPGEVYSTVMRLAGQDGDPQPVRLETLSSSWPPKGFLLE"
BASE COUNT          539 a         1335 c         1335 g          753 t
ORIGIN      
        1 ttcatggtga tctcggccgt ggcgtagctg tgcccggccg aaatgccgcc ttggaggtcg
       61 gagtacgcga cgttcgcgat gcttttgttc ttgacgatgt cctgcgggat cttcgagaac
      121 atgtcgcata cgagcttcat cgccttggcc gggtccgcgc ccgcgcccat ggtggatttg
      181 tcgctggtga acttgacgcc gtagcggccg gtggccagcg cgctcagcag atcgacgctg
      241 ccgtggtcgg gaatggcctg gatcatggca tcgacggtct tctcgccgcc attcccggcc
      301 atcgccgcgg cgagcttggt gatggccgcc tgatccggtt tggcggccgt catcagacca
      361 tcgagcttgg ccttgtcgag cttgacctcg acctgctgga tcgccttggc ggcgtcgtcg
      421 aagcgcaagg cgtcggcgag cttcttcgcg tcggcgatgg cggtctggag cgcattcttc
      481 gctgcgacat ccttcgtcgc ggcgacgcgc ttggcggcgg cgtcggtgcg ggtgtcgaag
      541 gtggcgcgat ccttgtcggc tttgttcgct gcggccaccg cgtcgttcgc ggcgcgcagg
      601 gtggcgatcg cctcggggcc cttgccggac ttgtcggccg ccttggcgtc ggccaggctc
      661 ttggccaccg ggtcgatcct cgccttgatc tgggccgcgc gtggcgaggt ctgcagcttc
      721 ttcaactgtg cctcgaccga ggcgagcgtc gtctggaact cgccatgctc ggcctggatc
      781 gtcttggcgg cgatcaactc tttcgccgcg gcggccagcg ctgtcgctgc ggccttgccg
      841 tcgttggcgg ccagcgcttt ctcggccgct gtggcctgca cttcgaagcg cttgaactcg
      901 gcgtccgcgg cggcggcgct tgccgccttg ctcgccacct tgccgtcggc gcgcaacttg
      961 gccagcgccg ccttcatgcc ggcaatgtcg ccgggcttgc ccgcggcggt ctccgccgac
     1021 gccgccactc ccatgccgtc ggcgagcttc ttcgccacgg ccagatcggc atgcgcccgc
     1081 gtcacgttcg tcaaggccga gttccagccc tgcgccggat cgggggcgcc gtcggcgaga
     1141 gtcgcaaaat tcttcgcgtc ggcgagcagc ttgcggatcg cttctcgttc ggtggcgatc
     1201 cgtgccgcag cggcgtgctt gtcgagtgcg gcgagatcgg tttcggcgag cttgcgttcg
     1261 ctgccgaccg tcgcgatcgt cttcgccagg cccgaccaca cctcgctgcg cttcttggcg
     1321 tcggcgagaa cctggacgcc ctcctcgatc ttcagcgtat cggccgcggc cagtgcgtcg
     1381 gccttcgtca cgagagcgtc gagcgccttg gcgcggtccg ctacggcggg ggcggcgcgc
     1441 accgcctcga ccgccttgac cgtcgccgca cgttgcgtgt cgtattcgct gcgccggccg
     1501 gcccttcgct cggccgggcc gagcgaacgc aacgcggaga tgcccgcttg ccggcagagg
     1561 ctgaattcac catcggcaag cgccttctcg ctctcggcaa cgagcggcct cgcttcgtcg
     1621 agtgccggct tgagatagcc tttgagcttg gcgtccgccg cctcgaccgt cttcagccgg
     1681 gtcttgaggt ccttcacgaa ggtggcgagt ccgggcttcc tgttgtcgtc gatctgcttg
     1741 aggatcttca gcgcgttggc aaagtcgggc ggcgaggaat tggcgaagcc gtccgcgttg
     1801 atcgtgacga ggtcggtcgc ggccttgacg ctgttgggcg tggtcttgaa tgccaggatg
     1861 atcgccatcg tcgcggcgcg cttcttggcg tagttgtccc agtcatcggc gagcttcttg
     1921 gccgccacgc agatcgtctt cgcttcgccg aggacgaccc tgatctcctt ccactccttc
     1981 ttcgcggcgt ggccgtcggc ggccaccagc ttggcaacgg cttggccgat ctgtgcggcg
     2041 atcttggctt tctgcgggtg ggcgttcagg ccgtcaacca gcttctgcac ggcgtcgcgt
     2101 accgtctggt aagcagcctg atccttgtcg acacccgacg agccgccggc gtcctcgaaa
     2161 tcgaggggca atgcggcatc gccatgggtc gccacggcga cggacgcgag tgtcctcgtg
     2221 agccccaagg cagtgaacag tcttcccatg gcagaaccct cttgctggaa atgacagcaa
     2281 gagtctagcc acgtcgcggc gtcgcgcgat ccccatttgt atggggtggc gtggtctctc
     2341 gcaaactgcg ggaattgtta ggatgcgagg aatgctcgtt ccaaccgatc tcttcgatct
     2401 cgcgacgccg tcggcgcccg agcctgctcc ggcgccgacg gcgtcgcgct cgccccggcg
     2461 cccgaccgcc gcctgtgccc tggcgatcgc ggccgcgctc gcactgcaag gcgttgccgc
     2521 cgctgcgggt ggcgacgccc cccgtccaaa tcccgatgga aggagaaacg acgtggcaat
     2581 cccagacagc ccatggactg cacgcggcgg caaacgcgct ttttcggcgc aacggctcgc
     2641 cgccgtcatg cctgagcaca tcggcgaatg gaagcgcgtc gggctcggca cgcccgtgcc
     2701 ctcgtccgac tacgagatgg acccggtgat gcgtgcgcaa tacgcgcgcg gcaacgagcg
     2761 cgccgacgtt gaggttgtcg atctgggcac cgccggcgtc accgcggcga aggcgccgat
     2821 gcccgacgct tcggccggcc cgcagaccga aagcggcacc gcgcaggtct accagtcgaa
     2881 acgtcgcttg atccgcgagg agcacgatcg tgagacgggc atcggcagcg tcagcgtcaa
     2941 tctccgcaac gggctgaacg tgcgcatcag cggcaggggc ctcgacgggc cggcgctcaa
     3001 gaccttgatc gacggcgtcg acatcgccgg caccgaggcg ctgcggcgcg gcgcccgcta
     3061 gcgacacgcg cacatgccct gccgccgccc cagcccgccg cccggaaagt aggcgaccgg
     3121 ccgccggctc aacggctcgc agactctgcg gcaaggccgc gttcattcgc ttgcgaacac
     3181 cttgcatggg catcaactct ggtcatgccg aagaccaagt gtcgggcttc ttcgccagcc
     3241 tgcctttgct caagagtgcg cgcgacacct tcgacaaggc acagtaccgc cccgcgcccg
     3301 acgaatgggc attggtcatc accgatatcg tggactcgac gatcgcgatt gccaacgggc
     3361 gccacaagac cgtcaatttc gtcgctgcga tggccatagc ggcgttgaag aacctctgcg
     3421 ctccagaatc gattccgttc ttgttcggtg gggacggagc ggtcgtcatg gtgccgccgc
     3481 ggcgtgcggc ccaggcgcgc cttgagttgg cgcgggtgcg cggccaggcc gcgcgcgagt
     3541 ttgggctcgc gttgcgcgtc ggcctgatac cagtgggcga gctgcggcgc ttcgggagcg
     3601 acgtgcgtgt gggtcgctat gaaccctcgc ctggaaacag ttttggcgtc ttcctcggcg
     3661 ggggcgtcgg tctccttgaa gccgccgtga gggggcgcgg cgaccccgaa ctgatagttc
     3721 gcgcggccat tcccgaatca ttggacgaca gtgcgccggt tgacctgtca ggcctgtcgt
     3781 gccgctggga cgcactgcgt tccaaacgtg gcaagatggt cacgctgatc atccacggcg
     3841 cagccgaccc aggcgaggtt tactcgaccg tcatgcgact cgccgggcag gacggcgacc
     3901 ctcaaccggt ccgtctggaa accctgagtt ccagttggcc gcccaaaggc ttcctgctgg
     3961 ag
//
LOCUS       DASVHM010000690         3028 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_842884, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000690 DASVHM010000000
VERSION     DASVHM010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3028
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_842884"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..213)
                     /locus_tag="VF308_12730"
     CDS             complement(<1..213)
                     /locus_tag="VF308_12730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar nucleotide-binding protein"
                     /protein_id="HEX7437568.1"
                     /translation="MKILLFGKNGQVGWELQRALAPLGELVALDFDSPGPLAADFSKP
                     EALVATVRAVAPHIIVNAAAHTAVDRC"
     gene            complement(210..1277)
                     /gene="rfbB"
                     /locus_tag="VF308_12735"
     CDS             complement(210..1277)
                     /gene="rfbB"
                     /locus_tag="VF308_12735"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011402075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEX7437569.1"
                     /translation="MILVTGGAGFIGANFVLDWIAATGEPIVNLDALTYAGNLESLRA
                     LDGDRRHVFVRGDICDRALLDRLMREYQPRAIVHFAAESHVDRSIHGPAAFIKTNVEG
                     TFTLLEAARAHWSALGAQAQAAFRFNHVSTDEVYGSLAAGEAPFTEDHAYAPNSPYSA
                     SKAASDHLARAWHQTYGLPVVTTNCSNNYGPYQFPEKLIPLMIVNALAGKPLPVYGDG
                     QQVRDWLYVKDHCAAIREVLARGVPGQTYNIGGWNEKPNLEIVQTICALLDELRPDPA
                     GPHARLVTHVTDRPGHDRRYAIDAGKIERELGWRPAETFETGIRKTVRWYLDNADWVA
                     RVQSGAYRDWVATNYASRGSP"
     gene            complement(1274..2749)
                     /locus_tag="VF308_12740"
     CDS             complement(1274..2749)
                     /locus_tag="VF308_12740"
                     /EC_number="2.7.7.13"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017523757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004476 - mannose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate
                     guanylyltransferase/mannose-6-phosphate isomerase"
                     /protein_id="HEX7437570.1"
                     /translation="MTTTSVLPVIMAGGSGTRLWPLSRARHPKQFLVLQGNRSLFQQA
                     AARLGGLAASDIAVGPPCVVGNEEHRFLILDQLRELALPQATVLLEPAARNTAPAMTL
                     AALHALEGGVDPVLVVTPADQTVTDAAAFGIAVSDAIRVAAAGAIVLLGITPDRPETG
                     FGYIRTATDDAAGGALQIERFVEKPDLASAEGYLSAGGYYWNSGMFVVRASVWLAALG
                     RFRPDIAGATRQAWAGRTTDASFVRPDAAAFAAVPSESIDYAVMERAASEKLSDSAGP
                     AFDMRMVPLSAGWSDLGAWDAVWQVGAKDAAGNCSVGDVLLRDSHDTLVHATSRLVGV
                     VGLANVVVVETPDAVLVADRGSSQDVKHIVAELDRRGRSEQTLHRQVHRPWGWYDSID
                     SGERFQVKRIMVKPGASLSLQKHHHRAEHWIVVRGTAEVTNGEQVSILSENQSTYIPL
                     GQMHRLANPGKVPLEIIEVQSGSYLGEDDIVRFEDTYGRVK"
     gene            complement(2746..>3028)
                     /locus_tag="VF308_12745"
     CDS             complement(2746..>3028)
                     /locus_tag="VF308_12745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase"
                     /protein_id="HEX7437571.1"
                     /translation="LLGSKRSITVNLGTGRGVSVFELVRAFEKASGRPVPYEIVARRP
                     GDIDACYADPALAQQLLGWEARRDLDAMCADSWRWQHMNPNGYSTGACA"
BASE COUNT          418 a         1016 c         1101 g          493 t
ORIGIN      
        1 gcagcggtcg accgcggtgt gggccgcggc gttgacgatg atgtgcggcg cgaccgcacg
       61 cacggtcgcg acgagggcct ccggcttcga gaagtcggct gcgagcggac ccgggctgtc
      121 gaagtcgagc gcgacgagct cgccgagcgg ggccagcgcg cgttgcagct cccagccgac
      181 ctggccgttc ttgccgaaca gcaggatctt catgggctgc cccggctggc gtagttcgtc
      241 gcgacccagt cgcggtaggc gccgctctgc acgcgggcga cccagtcggc gttgtcgagg
      301 taccagcgca ccgtcttgcg gatgccggtc tcgaaggtct cggccggcct ccagccgagt
      361 tcgcgttcga tctttccggc atcgatcgca tagcgccggt cgtggcccgg gcggtccgtc
      421 acgtgggtga cgaggcgcgc gtgggggccg gccggatcgg gccgcagctc gtcgagcagc
      481 gcgcagatcg tctgcacgat ctcgaggttc ggcttctcgt tccagccgcc gatgttgtag
      541 gtctggcccg gcacgccgcg cgcgagcact tcgcggatcg ccgcacagtg gtccttcacg
      601 tagagccagt cgcgcacctg ctgtccgtcg ccatagaccg gcagcggctt gccggccagc
      661 gcgttgacga tcatcagcgg aatcagcttt tcggggaatt gatagggccc gtagttgttc
      721 gagcagttcg tcgtcacgac gggcagcccg taggtctggt gccaggcccg cgcgaggtgg
      781 tcgctggccg ccttgctggc cgagtacggg ctgttcggcg cgtaggcgtg gtcttcggtg
      841 aacggcgcct cgccggccgc gagcgagccg tagacctcgt cggtcgacac atggttgaag
      901 cggaacgccg cctgcgcttg cgcgcccagc gccgaccaat gggcgcgcgc cgcttcgagc
      961 agcgtgaagg tgccttcgac gttcgtcttg atgaacgcgg ccggcccgtg gatgctgcgg
     1021 tcgacgtggc tttcggccgc gaaatggacg atcgcgcgcg gctggtattc gcgcatcagg
     1081 cgatcgagca gggcccgatc gcagatgtcg ccgcgcacga acacgtggcg ccggtcgcca
     1141 tcgagcgcgc gcaggctctc gagattgccg gcgtaggtca gcgcatccag gttgacgatc
     1201 ggctcgcccg tcgcggcgat ccagtcgagg acgaaattgg cgccgatgaa gccggcgccg
     1261 ccggtcacga gaatcatttc acgcgcccgt aggtgtcttc gaagcggacg atgtcgtctt
     1321 cgccgagata gctgcccgac tggacctcga tgatctcgag cggcaccttg cccgggttgg
     1381 cgaggcggtg catctggccg agcgggatgt aggtgctctg gttctcgctc aggatgctga
     1441 cttgctcgcc gttcgtgacc tcggccgtgc cgcggaccac gatccagtgc tcggcacggt
     1501 gatggtgctt ctgcaggctg agcgaggcgc ccggcttgac catgatgcgc ttgacctgga
     1561 agcgctcgcc cgaatcgatg ctgtcgtacc agccccaggg ccggtgcacc tggcggtgca
     1621 gcgtctgctc gctgcgtccg cggcgatcga gctcggcgac gatgtgcttg acgtcctggc
     1681 tgctgccgcg gtcggcgacc agaaccgcat ccggcgtttc gacgacgacg acattggcaa
     1741 ggccgacgac gccgaccagg cggctggtcg cgtggacgag cgtgtcgtgg ctgtcgcgca
     1801 gcagcacgtc gccgacgctg cagttgcccg cggcatcctt ggcgccgacc tgccacaccg
     1861 cgtcccaggc gccgagatcg gaccagcccg cgctcagcgg caccatgcgc atgtcgaagg
     1921 caggaccggc ggagtcggac agcttttccg acgcggcgcg ttccatcacg gcgtagtcga
     1981 tcgattcgct cggcaccgcc gcgaaggcgg ccgcatccgg ccgcacgaag ctcgcgtcgg
     2041 tggtgcgccc ggcccaggcc tgtcgcgtcg cgccggcgat gtcggggcga aagcgcccga
     2101 gcgcggcgag ccacaccgag gcgcgcacga cgaacatgcc gctgttccag tagtagccgc
     2161 ctgcgctcag atagccttcg gcgctcgcaa ggtcgggctt ctcgacgaag cgttcgatct
     2221 gcagcgcgcc gcccgctgcg tcgtcggtcg cggtccggat atagccgaag ccggtttcgg
     2281 gccggtccgg cgtgatgccg agcaggacga tggcgcctgc ggccgcgacc cggatcgcgt
     2341 cgctcacggc gatgccgaaa gccgcggcgt cggtcacggt ctggtcggcg ggcgtgacca
     2401 cgagcaccgg gtcgacgccg ccctcgaggg cgtggagcgc cgcgagcgtc atcgccggtg
     2461 cggtgtttcg ggccgccggc tcgagcagca ccgtcgcctg gggcagggcg agttcgcgca
     2521 actggtcgag gatcaggaag cggtgttcct cgttgccgac gacgcagggc gggcccaccg
     2581 cgatgtcgct cgcggccagc ccgccgaggc gcgctgcggc ctgctggaag aggctgcggt
     2641 tgccctgcag cacgaggaac tgcttggggt gccgggcccg cgacagcggc cacaggcgcg
     2701 tgccgctgcc cccggccatg atgaccggaa gcacgctggt tgtcgtcatg cgcaggctcc
     2761 ggtggaatac ccgttcggat tcatgtgttg ccagcgccag ctgtcggcgc acatcgcgtc
     2821 gaggtcgcgc cgcgcctccc agccgagcaa ttgctgcgct agcgcggggt cggcatagca
     2881 ggcgtcgatg tcgcccggcc ggcgcgcgac gatctcatac ggcaccgggc ggccgctcgc
     2941 cttctcgaac gcgcgcacga gttcgaacac gctgacgccg cggccggtgc cgaggttcac
     3001 ggtgatcgat cgcttcgatc cgagcagg
//
LOCUS       DASVHM010000691         4142 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_481234, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000691 DASVHM010000000
VERSION     DASVHM010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4142
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481234"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..312)
                     /locus_tag="VF308_12750"
     CDS             complement(<1..312)
                     /locus_tag="VF308_12750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013517773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HEX7437572.1"
                     /translation="MLLIPAIDLKNGHCVRLKQGDMQDSTTFSEDPAAMARRWVDAGA
                     RRLHLVDLNGAFAGKPVNEGAIKSILAEVGDEIPVQLGGGVRDLDTIERYLDDGLSYI
                     II"
     gene            complement(391..1080)
                     /gene="hisH"
                     /locus_tag="VF308_12755"
     CDS             complement(391..1080)
                     /gene="hisH"
                     /locus_tag="VF308_12755"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007868122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEX7437573.1"
                     /translation="MAVKTVAVVDYGMGNLRSVSQAVRHVAGQAGGRGDSFQVIVTSQ
                     PDEVYSAERVVLPGQGAIFDCMRELSESGLQEAVLDAAARKPLMGVCIGMQMLLGHSE
                     EGPDAAGTPGLGLIDGAVVRFRLEGRLQPDGSRFKVPQMGWNQVYQVAHDGTVHPIWA
                     GVPDGAYFYFVHSFYARPSDPRHSAGETDYGARFTSALARDNIFATQFHPEKSADHGL
                     ALYRNFLHWNP"
     gene            complement(1097..1693)
                     /gene="hisB"
                     /locus_tag="VF308_12760"
     CDS             complement(1097..1693)
                     /gene="hisB"
                     /locus_tag="VF308_12760"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014004509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HEX7437574.1"
                     /translation="MTEPRTATIQRDTKETRIRVRVNLDGSGTSKLSTGIGFFDHMLD
                     QIARHGLIDLEIDAQGDLHVDGHHTVEDVGIGLGLAVAQAVGDKKGLRRYGHAYVPLD
                     EALSRVVIDFSGRPGLVMNVPFKAGMIGGFDAQLAHEFFQGFANHALVTLHIDNLRGE
                     NAHHQCETVFKAFARALRSAIEIDPRMGDAVPSTKGSL"
     gene            complement(1690..2805)
                     /gene="hisC"
                     /locus_tag="VF308_12765"
     CDS             complement(1690..2805)
                     /gene="hisC"
                     /locus_tag="VF308_12765"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEX7437575.1"
                     /translation="MKSLAARIDRHIRQDVKSMHAYAIQPSAGLVKLDAMENPFRLPE
                     ALQRELGERLGRVAINRYPSGCVGAVTAVLSRYVELPSGCKLMLGNGSDELIGLLALA
                     CDVPGATILAPMPGFVMYEVSARLQGLAFVGVPLTDDFELDAAATLDAIERHRPAITY
                     IAYPNNPTANLFDEASVEHIVAAVGAQDGFVVFDEAYQPFSSRTWMHRLGRYEHVLVM
                     RTLSKFGLAGVRLGYMAGAAALIDEVDKVRPPYNVSALNAEATLFALEHAEVFAGQAA
                     VLRRERERLQAAFAGLPGVRAFPSEANMILVRVPDGARVFEGMKQHGVLVKHVAGLHP
                     LLANCLRITVGTPEENARMLDALRASLPPSAPSSSSS"
     gene            complement(2802..>4142)
                     /gene="hisD"
                     /locus_tag="VF308_12770"
     CDS             complement(2802..>4142)
                     /gene="hisD"
                     /locus_tag="VF308_12770"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEX7437576.1"
                     /translation="RQLDSTDPGFEAQLQRVLHWSSETDAAIEERVAAILADVRARGD
                     AAVLDCTRRFDGLDAESVAALEITRDELQAALRSIPPAQRSALEGAAQRVRDFHARQL
                     EACGRGWSYRDADGTLLGQKVTPLDRVGIYVPGGKAAYPSSVLMNALPAKAAGVGEIV
                     MVVPTPVRGASPGGTAHAERNPLVLAAAAVAGVDRVFTIGGAQAIGALAYGTETIRPV
                     HKITGPGNAYVASAKRRVFGTVGIDMIAGPSEILVLADGSTPPDWVAMDLFSQAEHDE
                     LAQSILLCPDAAYIAEVRAAIERLLPGMARRDVIRASLEGRGALIRTRDLEEACAISN
                     RIAPEHLEVSSAEPQRWEPLLRHAGAIFFGAYTSESLGDYCAGPNHVLPTSGTARFSS
                     PLGVYDFQKRTSLIEVSAAGAAVIGPIAVELAYGEGLQAHARAAEMRLKGGSAS"
BASE COUNT          626 a         1413 c         1464 g          639 t
ORIGIN      
        1 gatgatgatg tagctgagcc cgtcgtcgag gtagcgctcg atcgtgtcga gatcgcggac
       61 gccgccgccg agctgcaccg ggatctcgtc gccgacctcg gcgaggatgg acttgatcgc
      121 gccctcgttg accggcttgc cggcgaaggc cccgttcaga tcgacgaggt gcagccgccg
      181 cgccccggcg tcgacccagc gccgcgccat cgcggccggg tcttcgctga acgtggtgga
      241 gtcttgcatg tcgccctgtt tgaggcgcac gcaatgaccg tttttcaggt cgatcgcggg
      301 gatcagcagc atggccgaag atcggtggtg gaagaaaccg gggggtgtcg cgcgcagcag
      361 cggacggtca tccaggaagc atcaggcccg tcaggggttc cagtggagga agttgcgata
      421 cagggccagg ccgtggtcgg cgctcttctc ggggtgaaac tgggtggcga aaatgttatc
      481 gcgcgccagc gcggaggtaa agcgcgctcc gtagtcagtt tcgcctgcgc tgtggcgcgg
      541 gtcagacgga cgcgcataaa agctgtgcac gaaatagaaa tacgcgccgt cgggcacgcc
      601 ggcccagatc ggatggaccg tcccgtcgtg cgccacctgg tatacctggt tccagcccat
      661 ctgcggcact ttgaagcggc tgccgtcggg ttgcagccgg ccctcgaggc gaaagcgcac
      721 gaccgcgccg tcgatcaggc ccaggccggg cgtgcccgcc gcgtccgggc cctcttcgct
      781 gtgccccagg agcatctgca tgccgatgca cacgcccatc aggggtttcc tcgcggcggc
      841 gtcgagcacc gcttcctgca agcccgattc ggacagttca cgcatgcagt cgaatatcgc
      901 gccctgtccg ggcagcacga cccgctcggc gctgtagacc tcgtcgggct gcgacgtgac
      961 gatgacctgg aagctgtcgc cgcgcccgcc ggcctgcccg gcgacatggc gcaccgcctg
     1021 tgacaccgag cgcaggttgc ccatgccgta gtcgacgacg gcgacggtct tcaccgccat
     1081 cgccttgaac gcgccatcac agcgacccct tggtcgaggg caccgcatcg cccatgcgcg
     1141 ggtcgatctc gatcgcgctg cgcagggcgc gcgcgaaagc cttgaagacc gtctcgcact
     1201 ggtgatgggc gttttcgccg cgcaggttgt cgatgtgcag ggtgacgagc gcatggttcg
     1261 cgaagccctg gaaaaactcg tgtgcgagct gggcgtcgaa gccgccgatc atgccggcct
     1321 tgaagggcac gttcatcacg aggccgggcc ggcccgaaaa atcgatcacg acccgcgaca
     1381 gcgcctcgtc gagcggcaca taggcgtggc cgtagcggcg caggcctttc ttgtcgccga
     1441 ccgcctgggc caccgcgagg ccaaggccga tgccgacatc ctcgacggtg tggtggccgt
     1501 cgacgtgcag gtcgccctgg gcgtcgatct cgaggtcgat caacccgtga cgcgcgatct
     1561 ggtcgagcat gtggtcgaag aagccgatcc cggtcgagag cttcgaggtt ccgctgccgt
     1621 cgagattgac gcgcacgcgg atgcgcgtct ccttggtgtc gcgctggatc gtggcggtgc
     1681 ggggttcggt catgacgaac tcgatgaggg ggccgatggc gggaggctgg cccgaagggc
     1741 gtccagcatc cgcgcatttt cctccggagt gccgaccgtg atgcgcaggc agttggcgag
     1801 cagcggatgc aggccggcca cgtgcttgac cagcacgccg tgctgcttca tcccctcgaa
     1861 gacgcgcgcg ccgtccggca cgcgcacgag gatcatgttg gcttcgctcg ggaacgcgcg
     1921 cacgccgggc aaccccgcga aggccgcctg gagccgctcg cgctccctgc gcagcacggc
     1981 agcctggccc gcgaacacct cggcgtgctc gagcgcgaac agcgtcgcct cggcattgag
     2041 cgcgctgacg ttgtagggcg gccggacctt gtcgacctcg tcgatcagcg ccgccgcgcc
     2101 ggccatgtag ccgagacgca cgccggccag accgaacttg ctgagcgtgc gcatcaccag
     2161 cacgtgctcg taccggccga ggcgatgcat ccaggtgcgc gacgaaaacg gctgataggc
     2221 ctcgtcgaag acgacgaagc cgtcctgcgc gccgaccgcg gcgacgatgt gctcgaccga
     2281 tgcctcgtcg aagagattgg cggtcgggtt gttgggatag gcgatgtagg tgatcgccgg
     2341 tcgatggcgc tcgatggcgt cgagcgtcgc cgccgcgtcg agttcgaaat catccgtcag
     2401 cggcacgccg acgaaggcca ggccctgcag ccgcgccgac acctcgtaca tcacgaaccc
     2461 gggcatcggc gcgagaatgg tcgcgcccgg cacgtcgcag gcgagcgcga gcagcccgat
     2521 cagttcatcg gacccgttgc cgagcatcag cttgcagccg gaaggcagct cgacgtagcg
     2581 cgagagcacc gcggtcaccg cgccgacgca cccgctcggg tagcgattga tcgcgacccg
     2641 gccgagccgt tcgccgagtt cgcgctgcag cgcctcgggc aggcggaacg gattttccat
     2701 cgcgtcgagc ttgacgaggc ccgcgctcgg ctggatcgca taggcgtgca tcgacttcac
     2761 gtcctggcgg atgtggcgat cgatgcgtgc ggccaggctc ttcatgacgc gctcccgccc
     2821 ttgaggcgca tttcggcggc ccgggcgtgc gcttgcagcc cctctccata ggccagttcg
     2881 acggcgatcg ggccgatcac cgcggcaccg gcggcgctca cttcgatcag gctggtccgc
     2941 ttctggaagt cgtagacgcc gagcggcgac gagaaccggg ccgtgcccga ggtcggcagc
     3001 acgtggttcg gcccggcgca atagtcgccc aggctctcgc tcgtgtacgc gccgaagaag
     3061 atcgcgccgg catggcgcag cagcggctcc cagcgctgcg gctcggccga actcacctcg
     3121 aggtgctccg gcgcgatccg gttcgagatc gcgcacgcct cttcgagatc gcgggtgcgg
     3181 atcagggcgc cgcgcccttc gagcgacgcc cggatcacgt cgcgccgcgc catgccgggc
     3241 agcagccgct cgatcgcggc gcgaacctcg gcgatgtagg cagcgtccgg gcagagcaag
     3301 atgctttgcg ccagttcgtc gtgctcggcc tggctgaaga gatccatcgc gacccagtcg
     3361 ggcggcgtgc tgccgtcggc gaggacgagg atttcgctcg gtcccgcgat catgtcgatg
     3421 ccgaccgtgc cgaacacgcg ccgcttcgcg ctcgccacgt aggcgttgcc ggggccggtg
     3481 atcttgtgca ccgggcgtat ggtttcggtg ccgtaggcga gcgcgccgat cgcctgggcg
     3541 ccgccgatcg tgaacacacg gtcgaccccc gcgaccgccg cggccgcgag caccagcggg
     3601 ttgcgctcgg cgtgcgccgt gccgcccggg cttgcgccgc gcaccggggt cggcacgacc
     3661 atcacgatct cgccgacgcc cgcggccttg gccggcagcg cgttcatcag cacgctcgac
     3721 gggtaggcgg ccttgccgcc gggcacgtag atgccgaccc ggtcgagcgg cgtgaccttc
     3781 tgcccgagca gcgtgccgtc ggcgtcgcga taggaccagc cgcggccgca ggcctcgagc
     3841 tggcgcgcgt ggaaatcgcg cacgcgctgc gcggcgccct cgagcgcgct gcgctgcgcc
     3901 ggcgggatcg agcgcagggc cgcctgcaac tcgtcccgcg tgatctcgag cgcggcgacc
     3961 gattcggcgt cgaggccgtc gaagcggcgg gtgcagtcga gcaccgcggc atcgccgcgc
     4021 gcccggacgt cggcgaggat cgccgcgacc cgctcctcga tggccgcatc ggtctccgag
     4081 gaccagtgca gaacgcgctg cagctgtgcc tcgaacccgg gatcggtcga atcgagctgg
     4141 cg
//
LOCUS       DASVHM010000692         2086 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_410544, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000692 DASVHM010000000
VERSION     DASVHM010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410544"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..1438
                     /locus_tag="VF308_12775"
                     /pseudo
     CDS             1..1438
                     /locus_tag="VF308_12775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902433.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase-associated DEXH box helicase"
     gene            1479..2036
                     /locus_tag="VF308_12780"
     CDS             1479..2036
                     /locus_tag="VF308_12780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437577.1"
                     /translation="MNGFRLAGAALAIASGTLATTCRAAWVGALLTSAVSLGWSGPTQ
                     QSFLDIRVKDMTPGTLKVFRWKGRPYVIVRTTDAMLDDLREQTLHTWSQRPVAADRPA
                     FFVFSRLQGAPKCAVRYAPKEAPRYAPERLWQGGFYDSCRFGEWDHAGRAILQYPDQD
                     ESMRRPDLEVPTFELRDRLTLRLAR"
BASE COUNT          337 a          702 c          713 g          334 t
ORIGIN      
        1 agcggccacg cgcccggccg cgccagccgg atcacgctcg tgccgaccaa cacgctcgaa
       61 ctggtcgaag ccgccgcggc gcgcagggcc gccgcggccg gcaacatcga gaagcgcgcc
      121 acgccggaaa agcccttcga cgtgctggtg cagcacctcg tcacggtggc gcttggtggc
      181 ggcttcacgg ccgacgccct gttcgacgaa gtgcgcggcg cgtgggcgta ccgcgacctc
      241 acccgcgacg agtttcagtg ggcgctcgat ttcgtcgaga agggcggctc gagcctgacc
      301 gcgtatccgg agtaccaccc gcgtgcagct cgtcgacggc ctctacggcg tggccgaccg
      361 cggcgtcgcg cgccaccaca ggcttggcgt cggcatgatc gcggccgatg cctcgatgca
      421 ggtgaagtac ctcacgggcg gccgcatcgg cacggtggaa gagggcttcg tcgcgcgctt
      481 gcggccgggc gactgcttcg tcttcgcggg ccgaagtctc gaatacctgc gcacccagga
      541 tatgacggcc tacgtgaagc gcgccgaggg caagcgcggc gcgctgatca gctgggccgg
      601 cgcgaagatg ccgctttcga gcgagctcgc cgatgccgtg ctcgaggtcc tcgccggcgc
      661 cgcgcagggc gactactcgg ggcccgagct cgaggccgcg cggccgatgc tcgagacgca
      721 ggcgcagctc tcgaggctgc cgacgccggc gacgctgccg atcgagcgct tcaggtcgcg
      781 cgaaggccag cacctgttcc tctatccgtt cgcgggccgc aacgcgcaca tcggcctcgg
      841 cagcctgctc gcctggcgcc tcgcgaagga tgcgcccaac accttcagca tcgcgatcaa
      901 cgactacggc ctggaactgc tgagcgcact gccggtcgat cctgcgggcc tgctcgaccg
      961 cagcctgttc ggcgaggacg acctgctgca agacgtgctc gcgagcctca actcgagcga
     1021 actggcgcgg cggcgctttc gcgagatcgc gcgcgtggcc gggctcgttt cgaccggcta
     1081 ccccggccag ccgaagagca cgcggcaact gcaggcctcg agcacgctct tctacgagat
     1141 tttcaggaaa tacgacgcca gcaacatgct gctgacccag gcgcagagcg aggtgctcag
     1201 ccaggagctc gatatccggc gtctggccga ggtcctgcgg cgcatgcgcg ggcagagggt
     1261 cgagttcgtc gaattgaagg tgccgagccc gttcgcattg ccgctgatgg tggagcgttt
     1321 tcgcgagaaa ctgaccacgg aaaagctgaa ggatcgactg gatcggttgt tgagagagat
     1381 ggagaaggag gcggccggca gcgcttcgac cctcgaattg ccaaggcggt cgtcgtgacg
     1441 caagatgctt ttcttcgaac gtcgagaaag gcgcaaggtt gaacgggttt cgtcttgccg
     1501 gcgcggcgct ggcgatcgcc tccgggactc tggccacgac gtgcagggcc gcgtgggtcg
     1561 gggccttgct gacatcggcc gtttcgctcg gctggtccgg ccccacgcag cagtctttcc
     1621 tggacatccg cgtcaaggac atgacccccg ggactctgaa agttttccga tggaagggtc
     1681 gcccatacgt catcgtgcgc acgacagacg cgatgctcga tgatcttcgc gagcagacgc
     1741 tgcacacctg gagccaacgt ccggtcgctg ccgatcgtcc cgcattcttc gttttctcgc
     1801 gccttcaggg tgcacccaaa tgcgcggtcc gctacgcgcc caaggaagcg cctcgatacg
     1861 cgcccgagcg actgtggcaa ggcgggttct acgattcctg ccgcttcggc gaatgggacc
     1921 acgcggggcg cgccatcctg cagtacccgg accaggacga gagcatgcgc cgccccgatc
     1981 tggaggtgcc caccttcgag ctcagggatc ggttgacgct gcgcttggct cgatgagccg
     2041 acgtcgcgca caccgatggg cgcgaccgct tgcgctcggg ctcgcg
//
LOCUS       DASVHM010000693         1543 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1132978, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000693 DASVHM010000000
VERSION     DASVHM010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1132978"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..821)
                     /gene="prmB"
                     /locus_tag="VF308_12785"
     CDS             complement(<1..821)
                     /gene="prmB"
                     /locus_tag="VF308_12785"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008276 - protein methyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA];
                     GO_process: GO:0042273 - ribosomal large subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEX7437578.1"
                     /translation="MTLIELITEQAARLKKAGASFGHGTGNAFDEAAWLVMWALGMQL
                     DALEAHAQDTLGADAVDKAEALIAQRIESRVPAAYLTHEAWLQNVPFYIDERSIVPRS
                     FIAELLVDGEGTGILDAWLSDRTHAVLDLCTGNGSLAVIAAMAYPEIVVDAADISADA
                     LAVARINVERHGLGACITLIESDLFANLRGPYDLILCNPPYVNARSMAALPAEYRAEP
                     ALALAGGDDGMDLVRRILHDAAAYMTIDAVLVLEIGNERAHFERAFPRLECAWLDT"
     gene            complement(841..>1543)
                     /gene="dapE"
                     /locus_tag="VF308_12790"
     CDS             complement(841..>1543)
                     /gene="dapE"
                     /locus_tag="VF308_12790"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003264922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEX7437579.1"
                     /translation="SLCDWLAARGTRLDYCIVGEPTSVDRVGDMIKNGRRGSLSGRLS
                     VKGVQGHIAYPHLAKNPIHAAAPALAELVATVWDRGNAYFPATSWQVSNIHAGTGANN
                     VIPGELVIDFNFRFCTESTPQSLKDRVEAVLRRHQLDFELAWTLGGEPFLTPVGALSE
                     ALSQAILAETGNAPRLSTTGGTSDGRFIAKICREVIECGPVNATIHKIDESVEVASLE
                     PLKNIYRGALERLIA"
BASE COUNT          231 a          499 c          555 g          258 t
ORIGIN      
        1 gtatcgagcc acgcgcattc gaggcgcggg aacgcccgct cgaaatgtgc ccgctcgttg
       61 ccgatctcga gaacgaggac ggcgtcgatc gtcatgtagg cggccgcgtc gtgcaggatg
      121 cgccggacga gatccatgcc gtcgtcgccg ccggccaggg cgagcgccgg ctcggcccgg
      181 tactccgccg gcagtgccgc catgctgcgc gcgttcacgt agggcgggtt gcagaggatc
      241 aggtcgtagg gcccgcgcag gttcgcgaac agatccgatt cgatcagggt gatgcacgcg
      301 ccgagtccat gccgctcgac attgattcgc gccaccgcga gcgcgtcggc cgagatgtcg
      361 gcggcatcga cgacgatttc cggataggcc attgcggcga tcacggccag gctgccgttg
      421 ccggtgcaca gatcgaggac ggcgtgggtg cggtcggaga gccacgcgtc caggatgccc
      481 gtgccttcgc catcgacgag gagctcggcg atgaacgagc gcggcacgat gctgcgctcg
      541 tcgatgtaga acggcacgtt ctgcagccag gcttcgtgcg tcaggtaggc cgccggcaca
      601 cggctttcga tgcgctgtgc gatgagcgcc tcggccttgt ccaccgcgtc ggcgccgagc
      661 gtgtcctgcg cgtgggcctc gagcgcatcg agctgcatgc cgagcgccca catcacgagc
      721 cacgcggcct cgtcgaacgc gttgccggtg ccgtgcccga acgaggcgcc cgccttcttg
      781 aggcgggccg cctgttcggt gatgagttcg atcagtgtca cgccgagccg acctacacgc
      841 tcacgcgatc aggcgttcga gcgcgccgcg gtagatgttc ttcagcggct ccaggctcgc
      901 cacctcgacc gattcgtcga tcttgtggat ggtcgcgttc accggaccgc actcgatgac
      961 ttcgcggcag atcttcgcga tgaagcggcc gtccgaggtg ccgcccgtgg tcgagagccg
     1021 gggcgcgttg ccggtctcgg cgaggatggc ctgcgacagg gcctcgctca gcgcgccgac
     1081 cggcgtcagg aacggttcgc cgccgagcgt ccaggcgagt tcgaaatcca gttgatggcg
     1141 gcgcagtacg gcctcgacgc gatctttcag gctctgcggc gtcgattcgg tgcagaagcg
     1201 gaagttgaag tcgatgacga gttcgcccgg gatcacgttg ttcgcgccgg tgcccgcatg
     1261 gatgttcgag acctgccagc tcgtcgccgg aaagtaggcg ttgccgcggt cccagaccgt
     1321 ggcaaccagc tcggcgaggg cgggtgcggc cgcatggatc ggattcttcg ccaggtgcgg
     1381 ataggcgatg tggccctgca cgcccttgac gctgagccgg cccgaaagcg agccgcggcg
     1441 gccgttcttg atcatgtcgc cgacgcggtc gaccgaggtc ggctcgccga cgatgcagta
     1501 gtcgaggcgg gtgccgcgcg ccgcgagcca gtcgcagagg ctg
//
LOCUS       DASVHM010000694         2033 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_265090, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000694 DASVHM010000000
VERSION     DASVHM010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265090"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VF308_12795"
     CDS             complement(<1..293)
                     /locus_tag="VF308_12795"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX7437580.1"
                     /translation="MTNRTFYDALWRRARLERPDGFNTWPIVSELLPFAPARLEIGPG
                     LRPRLPIAGTHFVDISAPVIERLNARGGIAVSGEIGALPFSDQEFDLVCAFDV"
     gene            complement(474..887)
                     /locus_tag="VF308_12800"
     CDS             complement(474..887)
                     /locus_tag="VF308_12800"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437581.1"
                     /translation="MSHSYAIGNLVLPLLWQGTRVALPQSFSPGQFAREVADSGATVF
                     PGVPFMFERIKALEPIDRLPASLRLLITAGARIDAGTVSWFRRHLDRKVHSFYGSSET
                     GGIAYDDLACGARCSGLPRAPTRSEPPGGPRRLSR"
     gene            1126..1587
                     /locus_tag="VF308_12805"
     CDS             1126..1587
                     /locus_tag="VF308_12805"
                     /inference="COORDINATES: protein motif:HMM:NF019589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FabA/FabZ family ACP-dehydratase"
                     /protein_id="HEX7437582.1"
                     /translation="MTVRAFGVDQLPHRPPMRLVEEIADLVAGESARGLRVARPEDWY
                     FQGHFPDDPVVPAIVLIELLAQTGGLAAASGGERTGSAAMLRVAAVGPFKFPGAARPH
                     QLLDARARVVGRIGGLIKIEGEVLADGVRVAVGSVTLADVSVDQAAKAAAD"
     gene            complement(1603..1833)
                     /locus_tag="VF308_12810"
     CDS             complement(1603..1833)
                     /locus_tag="VF308_12810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437583.1"
                     /translation="MIGYLSGVPLLPAFMIRQADDRFIGEMGDPIVVDSTKPTEEAVQ
                     AATQAFAAQLEDRIRASPQLWYQFYPYWRSTS"
     gene            1841..>2033
                     /locus_tag="VF308_12815"
     CDS             1841..>2033
                     /locus_tag="VF308_12815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437584.1"
                     /translation="MRVPVQQSQRDAAQLPVAEMSADDHDAAPPRQQIIEAAAIEAGH
                     QRLELRPAHDEAADEVDRVS"
BASE COUNT          343 a          680 c          693 g          317 t
ORIGIN      
        1 atgacatcga aggcacagac gagatcgaat tcttgatcgc tgaatggcag cgcgccgatt
       61 tcgcctgaca cggcgattcc gccgcgcgca ttgagccgct cgatcaccgg tgcgctgatg
      121 tcgacgaaat gcgtgccggc aatcggcaac cgggggcgca ggcccggccc gatttccagt
      181 cgcgccggcg caaacggcag taactcggaa acaatcggcc atgtgttgaa gccgtccggg
      241 cgttcaaggc gggccctccg ccagagcgcg tcgtagaacg tacgattggt cacggcgacg
      301 tccggcgagg tcgggtgttt tggtgtgtct ggatgcattc ttcgatgatg accttgccgt
      361 cgcgctcgag ctgtcgggca acgggcatgc gggcaacgct ctctttgggc cagcattata
      421 gcgtgcctct ccccgcgctg atcggaccgt cgtgcctgtg ctggcgaaga ttcttaccta
      481 ctaagtctcc tcgggccgcc gggcggttca ctcctcgtcg gcgctcgagg caagccgctg
      541 cagcgcgcgc cgcacgccaa atcgtcgtag gcgatcccac cggtctcgct gctgccgtag
      601 aaggaatgca ccttgcgatc gaggtgtcgc cggaaccacg agaccgtgcc ggcgtcgatg
      661 cgggcgccgg ccgtaatcaa gaggcgcagc gacgcaggca gccgatcgat cggttcgagc
      721 gccttgattc gctcgaacat gaatgggacg cccggaaaca ccgtggcgcc gctgtcggcg
      781 acctcgcgcg cgaactgccc cgggctgaac gactgaggga gagcgacgcg cgtgccctgc
      841 cacagcagcg gcaagacgag gttgccgatc gcgtacgagt gggacaacgg aagaaaatcg
      901 gacggccgcc gacgaacgag accaccaccg cgtcgcgccc gacgccgaga tcggtcagcg
      961 cccgcttgat cgccgtgcac tcggcggcga ggtcggcgaa tgtcgtcgtc gtgccgcccg
     1021 aaagggtatg caccgcgacg gcgcccgccc gctcgcaaca gatccgctga aaccgctcac
     1081 cgatggcgct cgtcggcacg gctgctagaa tggccgagac cgcctatgac tgtaagagcg
     1141 ttcggcgtcg accagctccc gcaccgaccg ccgatgcggc tcgtcgagga gatcgccgat
     1201 ctcgtcgccg gcgagtcggc gcgcggcctc cgcgtcgcgc ggccggagga ttggtacttt
     1261 caggggcact ttccggacga cccggtcgtg ccggcgatcg tgctgatcga gctgctggcg
     1321 cagaccggag ggctcgcggc agccagcggc ggagagcgga ccggttccgc ggcgatgctg
     1381 cgcgtcgcgg ccgtcggacc gttcaagttc cccggcgccg cccggccgca tcagctgctc
     1441 gacgcacgcg cgcgagtcgt cggacggatc ggcggcctga tcaagatcga aggcgaagtc
     1501 ctggcggacg gcgttcgcgt ggccgtcggc agcgtcacgc tcgcggacgt cagcgtcgac
     1561 caggcggcaa aggccgccgc tgactgaatc cgccgatccg gattagctgg tagagcgcca
     1621 gtacgggtag aactgatacc agagctgcgg gctcgcgcga atccgatctt cgagctgagc
     1681 cgcgaacgcc tgcgtcgcgg cctgcacggc ctcctcggtc ggcttcgtgg agtcgaccac
     1741 gatcgggtcg cccatctcgc cgatgaatcg gtcgtccgcc tggcggatca tgaatgccgg
     1801 cagcagcggc acccccgaca gatagccgat catcgccggc gtgcgggtac ccgtgcagca
     1861 gtcgcagcgc gacgccgccc agcttccagt tgccgaaatg tccgccgacg atcacgacgc
     1921 cgcgccgccg cgccagcaga tcatcgaggc ggccgctatc gaagctggcc atcagcggct
     1981 cgaactgcgt ccggctcatg acgaggctgc ggatgaagtc gatcgtgtct cgc
//
LOCUS       DASVHM010000695         7852 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1276440, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000695 DASVHM010000000
VERSION     DASVHM010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7852
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1276440"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..242)
                     /locus_tag="VF308_12820"
     CDS             complement(<1..242)
                     /locus_tag="VF308_12820"
                     /inference="COORDINATES: protein motif:HMM:NF017009.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEX7437585.1"
                     /translation="MLPLMLHGDTLVVLLADPWDKALLDELRFVTQHHVLPVMAAPGT
                     LMPAIHRAYNAVREKTEAGDGEADMDTAQGLAASLMA"
     gene            262..1098
                     /locus_tag="VF308_12825"
     CDS             262..1098
                     /locus_tag="VF308_12825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437586.1"
                     /translation="MRDTSCKTRGSGCEVPRIDHAHPHPLGTRHAQLRLGQSPALDQD
                     APERPIRARALLDLERALQGLAVDPPATQQRLAQLLCTLQRRSRSFQQGPERFGSVGT
                     CGSQAPGRGRVGDERTVADRSMNAVTRVDEPVLLHASRQEHAQPGPARARDDRDTFAA
                     EHFRVAEFEPKGPGVRFRRGTDRPAGQLERAQQLAPQAHRRGAAAALAHRDFDQRVGV
                     AKGQQDTAHEAVVVQQRFNRPVKRWRNGRDRGRRGLLAEARSAWFKEQLDRAYAEAYI
                     PL"
     gene            1318..2847
                     /locus_tag="VF308_12830"
     CDS             1318..2847
                     /locus_tag="VF308_12830"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEX7437587.1"
                     /translation="MNDIFRHDTSHHLRLLVDHVPSMLAYWDRDLRCRFANRSYERWF
                     GVAPDSLIGTSIRDLLGPELFALNEPHIRAALRGEEQLFERIVPGPGDVKRHSLANYI
                     PDIANGEVAGFLVQVTDVSRLKEVEAELRAQAVERQRAYELLRKNESALRQAQRLGQI
                     GSWEWEIAPDISTWSDELYRIFACDPLRRPPSAAEHSKLYTPESWSRLRVAVEHTLET
                     GEPCTLELEYMRPDGATGWIEARVEAVRDEHGEIVKLRGTVLEITMRRHVEEARLQRD
                     VAEAANRNKTLFLSRVSHELRTPLNGILGFAQLIRTDPSTGTKQSQWADVVERSGLHM
                     LELVDELLDLSSAELGRIGATRVRLDLPKIIRESLSQLTPMAIEARVEVLNRIHDSES
                     LQVLGDPKRLRQVINNLVSNAIKYNRAGGLVTLSAVSCGTTVEVTIDDTGIGMSADQR
                     SRLFIPFERLGAELTAIKGTGVGLALAKELVELMGGSLRAESEPGVGSSFIVTFTAGL
                     E"
     gene            complement(2900..4039)
                     /locus_tag="VF308_12835"
     CDS             complement(2900..4039)
                     /locus_tag="VF308_12835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019142791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEX7437588.1"
                     /translation="MRKLFAAIGLVVVALAAYLLLWPVPVQPVAWAAPKAPGYVAPHA
                     ANTRLAGLRNIDLGADEGPEHIVVREGWVYAAVASGAIVRMRPDGSAKEVVVNTGGRP
                     LGFDFDAQGAMIIADPMAGEHGGLLRADLSPGAAKGAALELLTDQVGGDPIRYADGVI
                     VARSGKIYFTDASRRFGAKAWGGTFNASVLDIVEHQATGRLLEYDPATKATRVLLKDL
                     CFANGLALSADEQHVFVNETGAYRIWKVAVTAADVSAAEPTPAATVLLDNLPGHPDNL
                     MRGLNGRIWAGLVKPRGAFIDDSAGKPWLRSLAMRLPKSLWPVPPAYGHVFAFDEAGT
                     VLVDLQDPSGVYPETTAVTETAERLYIQSLHAKTLGWMDKTKAGL"
     gene            complement(4242..5426)
                     /locus_tag="VF308_12840"
     CDS             complement(4242..5426)
                     /locus_tag="VF308_12840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase family protein"
                     /protein_id="HEX7437589.1"
                     /translation="MSKRDVVVLGAARSAIGTFGGALADIEPAELAGTVMKEAVKRSG
                     VDPKAINYVTVGNTIPTESRFAYVARVASIQAGLPMDSVAMSVNRLCSSGLQAIVTTG
                     QNILLGDCDYGVGGGVEVMSRGGYLSAAMRTGARMGDTKLVDMMVATLTDPFGVGHMG
                     ITAENLVTKWGITREEQDALAVESHRRAAAAIAEGRFKSQIVAIVKQTRKGEVVFDTD
                     EHVKAGTTMETLAKMKPAFKKDGSVTAGNASGINDGAAFFVLADATVAAAAGHKPMAR
                     LVSYAVAGVPHEIMGEGPIPATKLALKKGGLRLDQMDVIESNEAFAAQAIAVSRGLEL
                     DMKKTNPNGGAIALGHPIGCSGAFLATKAVYELQRTGGRYALVTMCIGGGQGIAAVFE
                     RL"
     gene            complement(5502..6686)
                     /locus_tag="VF308_12845"
     CDS             complement(5502..6686)
                     /locus_tag="VF308_12845"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HEX7437590.1"
                     /translation="MSAPLRLILDAPWRVAAGTLLVRGTPRVRAAVRIRMRDADGTVG
                     LGEALPLPGYSRDDAASAERALGAIAARVARDGLPVQETAPDAVPEASGIDGRAAARL
                     DATLAPYSALLSGAPSARFALECALVDLLARRDGVSAAQWLAGGRALQKVPVSVLLPD
                     DDRAAVIAAAEAAARGHNVLKLKIARPDRTPDREDALLAEVRAAADAACAGTRVRPLL
                     RLDANGALAPALAPGRLAALVRYGVELVEEPVAGAALLTLPALPLPWAADESLADPAL
                     VEALCALPRGRQPAALVLKPAQLGLARCLILAESAARRGLGLIVTHSLDADLGHAAAC
                     ALAAALPVPPWPCGLAPHPGLRFPLVARPWLPEPTARGLGVAGEAAAPGDDTGVDTAT
                     WL"
     gene            complement(6733..7488)
                     /locus_tag="VF308_12850"
     CDS             complement(6733..7488)
                     /locus_tag="VF308_12850"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX7437591.1"
                     /translation="MRPSKGAGGPPLVLLHGFLGAPAAWDAALAALPQHGSVWCPWLP
                     GHGPAPAEPAHFDAAAQALADVLPEGAILAGYSLGARLALAATLRRPGHVRATLLIGG
                     HVGLANDAERLDRAALDAQRAAVLRAGDLATFVAAWEALPLFATQRALPVALQARQRA
                     ARLAHDPHALAWAFEVAGLAQMPDLRSAVGAARQPLCFLTGALDARFGALADSLVRPP
                     WVTHRIVPHAGHNLLLEAPAGVAAALAALMRTT"
     gene            complement(7512..>7852)
                     /locus_tag="VF308_12855"
     CDS             complement(7512..>7852)
                     /locus_tag="VF308_12855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437592.1"
                     /translation="SIVRGALAVVVVHNDGGRIFERLPLARDDALAAARERLFVAPHG
                     RAFDGLAATWGLGYARVDTPAALRAALAQALGAERAVLIEARVAPGGSARRAALLAAM
                     ARAAEPADGT"
BASE COUNT         1240 a         2724 c         2749 g         1139 t
ORIGIN      
        1 gccatgagcg aggcggccag gccttgcgca gtgtccatgt ccgcctcgcc gtcgcctgcc
       61 tcggtcttct cccggacggc gttgtaggcg cggtgaatgg ctggcatcag cgtgccgggc
      121 gcggccatca ccgggagcac gtggtgctgc gtcacgaagc gcaattcgtc gagcagcgcc
      181 ttgtcccagg gatcggcgag cagcaccacg agggtgtcgc cgtgcaacat caagggcagc
      241 accgatgcac gttcggcaag cgtgcgcgac accagctgca agacccgcgg ctcggggtgc
      301 gaggtccccc ggatcgatca cgcgcacccc catccactcg gcacgcgcca tgcgcagttg
      361 cgcctcggac agagccccgc tctcgaccag gatgcgcccg agcggccgat ccgcgccagg
      421 gcgttgctgg accttgagcg cgcgctgcag ggcctcgcgg tcgatccacc cgccacgcaa
      481 caacgcctcg cccagctgct gtgcaccctc cagcgtcggt cgcgaagttt ccagcagggc
      541 ccagagcgat tcgggtcggt cgggacgtgc gggagccagg cgccgggtcg cgggcgtgtc
      601 ggggacgagc ggaccgtcgc cgatcgaagc atgaacgcgg tcacgcgagt cgatgaacca
      661 gtgctccttc acgccagccg gcaggagcac gcacagccag gccccgcgcg ggcgcgcgac
      721 gaccgagaca cattcgccgc tgagcacttc cgagtcgctg aattcgaacc gaaagggcct
      781 ggggtgcgat tccgacgagg taccgatcgg ccagccggtc agcttgagcg cgcgcaacaa
      841 ctcgcgccgc aggcgcatcg gcgcggcgcc gctgccgccc tcgcccatcg cgatttcgac
      901 cagcgcgtcg gtgtcgcgaa agggcagcaa gacaccgcgc acgaggctgt ggttgttcag
      961 cagcgcttca accggcccgt gaagcggtgg cggaacggac gggatcgagg acggcggggt
     1021 ctgctggcag aggcgcgatc ggcatggttc aaggagcaac tcgatcgagc atacgcagag
     1081 gcctacatcc cgctttgaca tcgaacaagc ctcctggcgc ctgcgccggc gccatctcgc
     1141 tgtggcttag gatttgcgtg caaattcaac ggatctgtcc aacgacgacg ctgctcctcg
     1201 cacgtgacac ggtcgcgggc ttgatgcagc tcaaccaatc gctgcggcga gtgcgatccg
     1261 ggcatcgaag gtttgacaat gcattggcca tgaatctgac tccagtcgca agacacgatg
     1321 aacgacatct ttcgccacga cacgtctcac catctgcgcc tcttggtgga ccacgtgcca
     1381 tcgatgctgg cgtattggga tcgagacctt cgctgccggt tcgccaaccg ctcctatgag
     1441 cgctggtttg gcgtggctcc cgacagtctc atcggcacgt cgattcgaga tcttctcggg
     1501 cccgagctat ttgcactcaa tgaaccgcat attcgcgccg cgctgcgagg cgaagagcaa
     1561 ctcttcgagc ggatcgttcc cgggccgggc gacgtcaagc gtcacagcct cgcgaactac
     1621 ataccggaca tcgcgaacgg cgaggtggcg ggcttcctgg ttcaggtcac cgacgtcagc
     1681 cggctgaagg aagtcgaggc cgagctgcgc gcgcaggccg tcgaacgaca gcgcgcatac
     1741 gagctgctgc gcaagaacga gtctgcgctg cgccaagcgc agcgactcgg ccagatcgga
     1801 agctgggaat gggaaatcgc gccggacatt tcaacctggt ccgacgagct gtaccggata
     1861 ttcgcctgcg acccgttgcg ccggccgccc agcgccgccg agcactcgaa gctgtacacg
     1921 ccggagagtt ggagcaggtt gagggtcgcg gtcgaacaca cgctcgagac cggcgagcct
     1981 tgcacgctcg aactcgagta catgagaccg gacggcgcca cagggtggat cgaggctcgg
     2041 gtcgaggccg tccgcgatga gcacggcgag atcgtcaagc tgcgcggcac ggtgctggag
     2101 atcacgatgc gccgccacgt ggaggaggct cgcctccagc gcgacgtcgc ggaggccgcc
     2161 aaccgaaaca agacactgtt cctttcgcga gtcagccacg agttgaggac tccactcaac
     2221 ggcatcctcg gcttcgcaca gctcatcagg acggacccga gtaccggcac gaagcaaagt
     2281 cagtgggcag acgtggttga gcgcagtgga ctgcacatgc tggaactcgt tgacgagctt
     2341 ctggacctgt cgagcgccga gctgggccgg atcggcgcca cgcgggtcag actggatctg
     2401 cccaagatca tccgcgaaag cctctcgcaa ctcacgccga tggccatcga ggcgcgggtg
     2461 gaggtgttga atcggattca cgacagcgag tccttgcagg tgctgggcga cccgaagagg
     2521 ttgcggcaag tgatcaacaa cctcgtctca aacgcgatca agtacaaccg tgcgggcggt
     2581 ctcgtcaccc tgtcggcggt gagctgcggc acgaccgtcg aggtgaccat cgacgacacc
     2641 ggtatcggca tgtcggcgga tcagcgctca cgcttgttca taccttttga acggctcggc
     2701 gccgaactta ccgcgatcaa ggggacgggt gtgggcttgg ccctggccaa ggagctggtc
     2761 gagctgatgg gaggaagctt gcgcgccgag agtgagccgg gcgtaggctc atccttcatc
     2821 gtgacgttca ccgctggact cgaatgaacg gcgtttcggc tggccgtctt ccaagagcgg
     2881 ggctgcgaca ccgagtgcgc tagagcccgg ccttcgtctt gtccatccag cccagcgtct
     2941 tcgcatgcag gctctggatg tagaggcgct ccgcggtctc ggtgaccgcg gtggtttcag
     3001 ggtagacgcc gctcggatcc tgcaggtcga ccagaacggt gccggcttcg tcgaacgcga
     3061 acacgtggcc gtaggccggc ggcaccggcc acagcgactt gggcaggcgc atcgcgagcg
     3121 agcgcagcca gggcttgccg gcgctgtcgt cgatgaacgc gccgcgcggc ttcacgaggc
     3181 ccgcccagat gcggccgttc aggccgcgca tcaggttgtc gggatggccc ggcagattgt
     3241 cgagcagcac cgtggccgca ggcgtgggct cggccgcgct gacgtcggcg gccgtcaccg
     3301 ccaccttcca gatgcgatag gccccggtct cgttgacgaa cacgtgctgc tcgtcggcgc
     3361 tgagtgcgag gccattggca aagcacaggt ccttcagcag cacccgtgtg gccttcgtcg
     3421 ccgggtcgta ttcgagcaat cggcccgtcg cctggtgttc gacgatgtcg agcacgctgg
     3481 cgttgaaggt gccgccccag gctttcgcgc cgaagcggcg cgatgcatcg gtgaagtaga
     3541 tcttgccgct ccgggcgacg atgacgccgt cggcatagcg gatcgggtcg ccgccgacct
     3601 ggtcggtcag gagctcgagg gccgcgcctt tggccgcgcc gggtgacagg tcggcgcgca
     3661 gcaagccgcc gtgttcgccg gccatcgggt cggcgatgat catcgcgccc tgcgcatcga
     3721 agtcgaagcc gagcgggcgg ccgccggtgt tcacgacgac ttccttggcc gagccgtcgg
     3781 gccgcatccg gacgatggcg ccgctggcca ccgcggcata gacccagccc tcgcgcacga
     3841 cgatgtgttc cggcccctcg tcggcgccca ggtcgatgtt gcgcagcccg gcgagcctag
     3901 tgttcgccgc gtgcggcgcc acgtagccgg gcgctttcgg cgcggcccac gccaccggct
     3961 gaaccggcac cggccacagc agcagatagg cggcgagcgc gacgacgaca agacctatgg
     4021 ccgcgaacaa cttgcgcatg agaacgtctc ctgtcggttc gggggcgggt gtctggaaca
     4081 tcacggcccg atggcaaaag gcctgcgatg ccttcgacat tctcgctgct cgtggcgccg
     4141 ccgcttcgac gaactcacac cgcgcggaat gcgctggatc tgcatgacgc ggcgacaggc
     4201 atccagcggc ccggcgcggc ttgccgcgcc ggcgtgacgc gtcagaggcg ttcgaacacc
     4261 gccgcgatgc cctgcccgcc gccgatgcac atcgtcacca gcgcgtaacg cccgccggtg
     4321 cgctgcagtt cgtacaccgc cttggtggcg aggaaggcgc ccgagcagcc gatcgggtgg
     4381 ccgagcgcga tcgcgccgcc gttcgggttg gtcttcttca tgtcgagctc caggccgcgc
     4441 gacaccgcga tcgcctgcgc cgcgaaggct tcgttgctct cgatcacgtc catctggtcg
     4501 agcctgaggc cgcccttctt gagcgccagc ttggtggccg ggatcgggcc ttcacccatg
     4561 atctcgtggg gcacgccggc caccgcgtac gacaccagcc gcgccatcgg cttgtggccg
     4621 gccgctgccg cgaccgtcgc gtcggccagc acgaagaagg ccgcgccgtc attgatgccc
     4681 gaggcgttgc ccgcggtcac cgagccgtct ttcttgaacg ccggcttcat cttcgcgagc
     4741 gtctccatcg tcgtgcccgc cttcacatgc tcgtcggtgt cgaagaccac ctcgcccttc
     4801 ctcgtctgct tgacgatagc cacgatctgc gacttgaagc gcccttcggc gatcgccgcc
     4861 gccgcgcgcc ggtgcgactc gaccgcgagc gcgtcctgct cctcgcgcgt gatgccccac
     4921 ttggtgacca ggttctcggc cgtgatgccc atgtggccca cgccgaacgg gtcggtcagc
     4981 gtggcgacca tcatgtcgac gagcttggtg tcgcccatgc gcgcgccggt gcgcatcgcc
     5041 gccgacaggt agccgccgcg actcatcact tcgaccccgc cacctacgcc gtagtcgcag
     5101 tcgccgagca ggatgttctg gcccgtcgtc acgatcgcct gcaggccgga cgaacagaga
     5161 cggttcaccg acatcgccac cgaatccatc ggcagcccgg cctggatcga cgccacgcgc
     5221 gccacgtacg cgaagcggct ttcagtgggg atggtgttgc ccaccgtcac gtagttgatg
     5281 gccttcgggt cgacgccaga gcgcttgacc gcttccttca tcacggtgcc ggccagctcg
     5341 gccggctcga tgtcggccag cgccccgccg aaagtgccga tcgccgaccg cgccgcgccc
     5401 aggaccacca cgtcacgctt gctcatgctc tgtctccttg gggactgaat tgccaaagga
     5461 ggaagttgac tccctcgggc tggcatcgac cttacgccag atcaaagcca cgtggccgtg
     5521 tcgactccgg tgtcgtcgcc tggcgccgca gcctcgccgg ccacgcccag cccccgggcg
     5581 gtcggctccg gcaaccaagg ccgcgcgacg agcgggaagc gcaaccccgg gtgcggcgcg
     5641 agcccgcagg gccaaggcgg caccggcagc gcggccgcca gcgcgcatgc ggctgcgtga
     5701 ccgaggtcgg cgtcgaggct gtgggtgacg atcaggccga gcccgcgccg ggctgcggac
     5761 tcggccagga tcaggcagcg cgccaggccc agctgcgcgg gcttgagcac cagcgcagcc
     5821 ggctggcgcc cgcgtggcag cgcgcacagc gcctcgacga gtgcggggtc ggcgagcgat
     5881 tcgtcggccg cccaaggcag tggcagcgcc ggcaatgtga gcagcgcggc gccggccacc
     5941 ggctcctcga ccagttcgac gccatagcgc accagcgccg caagccggcc tggcgccagc
     6001 gctggcgcga gcgcgccatt ggcgtcgagc cgaagaaggg gccgcacgcg cgtgcccgcg
     6061 catgcggcgt cggccgcggc tctcacttcg gcgagcagcg catcctcccg gtccggcgtc
     6121 cgatcgggtc gcgcgatctt cagcttgagc acgttgtggc cgcgcgcggc ggcttcggcc
     6181 gccgcgatga cggcggcacg atcgtcgtcg ggcaacagca cgctgaccgg caccttctgc
     6241 agtgcgcggc cgccggccag ccactgcgcg gcactgacgc cgtcgcgccg tgcgagcaga
     6301 tcgacgagcg cgcattcgag tgcgaagcgt gcgctcggcg caccgctgag cagcgccgag
     6361 tacggggcga gcgtggcgtc gagccgcgcg gcggcgcgac catcgatgcc tgaggcttcg
     6421 ggcacggcat caggcgccgt ctcctgcacc gggaggccgt cgcgggccac gcgcgctgcg
     6481 atcgcgccga gcgcgcgctc ggcgctggcc gcatcgtcgc ggctgtagcc gggcagcggc
     6541 agggcttcac cgaggccgac cgtgccgtcg gcgtcgcgca tgcgaatgcg caccgctgcg
     6601 cgcacgcgcg gtgtgccgcg cacgagcagc gtgccggcgg ccacgcgcca cggagcgtcc
     6661 aggatcaggc gcagcggcgc cgacatggtc gtcgcgcagg tcgggcgcga atgcttgtgc
     6721 gccccggagc ggtcatgtgg ttctcatcaa ggcagccagc gctgccgcca ccccggcggg
     6781 cgcttccagc agcaggttgt ggccggcatg gggcacgatg cgatgcgtca cccaaggagg
     6841 gcggacgagg gagtcagcca gcgcgccgaa gcgcgcatcg agcgcaccgg tcaggaagca
     6901 gagcggctgg cgcgccgcgc cgactgcgct gcgcaggtcg ggcatctgcg ccaggccggc
     6961 gacctcgaac gcccaggcga gcgcgtgcgg gtcgtgggcg aggcgcgcgg cacgctgccg
     7021 ggcctgcagc gccaccggca gagcgcgctg cgttgcgaaa agcggcaacg cttcccaggc
     7081 ggcgacgaaa gtggccaggt cgccggcgcg cagcacggca gcacgctgcg cgtcgagggc
     7141 ggcgcggtcg agacgttcgg cgtcatttgc caagcccaca tggccgccga tcaggagcgt
     7201 cgcgcggaca tggccggggc gacgcagcgt ggctgccagc gcgagccgcg cgcccagtga
     7261 atagccggcg aggatcgcac cttcgggcag cacgtcggcg agcgcttgcg cagccgcgtc
     7321 gaagtgcgcc ggctcggccg gcgccggacc atggccgggc agccagggac accacacgga
     7381 accgtgttgc gggagcgcgg ccagcgccgc gtcccatgcg gcaggcgcgc cgagaaagcc
     7441 gtgcagcagc accagcggcg gcccgcctgc gcctttcgac gggcgcatga ggcccgggcg
     7501 atggccggcg atcacgtgcc gtcggccggt tcggcggcgc gcgccatcgc cgcgagcaac
     7561 gcggcgcgac gcgcgctgcc gccgggagcg acgcgcgcct cgatcagcac cgcccgctcg
     7621 gcgccgagtg cctgggcgag tgccgcacgc agcgctgccg gcgtatccac acgcgcgtag
     7681 cccaggcccc aggtggcggc gaggccgtcg aacgcgcgac catgcggggc gacgaacagc
     7741 cgttcgcggg cggcggccaa cgcgtcgtcg cgcgccaagg gcaaccgctc gaagatgcgc
     7801 ccgccgtcgt tgtgcacgac gacgacggcc agcgccccgc gcacgatgga cg
//
LOCUS       DASVHM010000696         2620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_553920, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000696 DASVHM010000000
VERSION     DASVHM010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_553920"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..386)
                     /locus_tag="VF308_12860"
     CDS             complement(<1..386)
                     /locus_tag="VF308_12860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEX7437593.1"
                     /translation="MLALLVVGVAAPPMFQWAVLDATFPGSARTHCEVRGACWLFVAE
                     RLPQFLYGYYPAPERWRLHLIAAGIAAWCAMLMLPAFRRRLDVAIGAISVGLAAGYVL
                     AAGGMFGLPKVETNLWGGLFVTLILS"
     gene            complement(475..1527)
                     /locus_tag="VF308_12865"
     CDS             complement(475..1527)
                     /locus_tag="VF308_12865"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015837 - amine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX7437594.1"
                     /translation="MAALAVAAALYAIEVMRMRGIQAGFGFLKNTAGFEIGFKLIRFD
                     STDSYGRAFVVALLNTLLVSGLSVVLGTAIGLLVAVARLAPIPAIKAAATMYVEAIRN
                     TPLLFQLLALYAVSLAVLPPPRDSITVVGLALVNNRGIFLPSAGMTARAALAAIALVL
                     LLAAYGWLSRRRSLGRPVLALTAIIAVALAASTLASMDWVVPKVLGFNVEGGIALVPE
                     LAVLVVALSLYSAAFIAETFRSGFLAVPAGQWHAAFALGLDRAATIRGVVLAQALRAC
                     LPALASQYINVIKASSLAAAVGFPDLMQVFGKTTLNQTGQAVEVIALTMAVYLVMSMT
                     IAGAVHGYERRVAMER"
     gene            complement(1590..>2620)
                     /locus_tag="VF308_12870"
     CDS             complement(1590..>2620)
                     /locus_tag="VF308_12870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7437595.1"
                     /translation="IASMKKLAALIAVVATGTLGSVASAATLDSVRERGFVNCGVGEN
                     FAGFFAPDSAGKWSGLDVDVCRALSAAIFGVADKVKYLPATPATRFAQLQSGQVDLLS
                     RSVTWTLARDAGLGLTFSGVTFFDGQGFMVRKALAAKGLKGLDGATVCTQTGTTTELN
                     LADYFRSHSMKYTPVVFETTDQVVAAYEAQRCDAYTTDKSTLAARLGKLKDPGAHVIL
                     PETISKAANGPVVRQGDGQWANIVRWTVNALVAAEELGVTSANVDQMKATSKDPETRR
                     LLGADGELGKLMGLDNAWAFNAIKAVGNYGEIYERNLGPKGAVAIPRDGLNRLWSKGG
                     LMFSPSFQ"
BASE COUNT          487 a          902 c          855 g          376 t
ORIGIN      
        1 aacgacagta tcaaggtcac gaagaggccg ccccagaggt tggtttccac tttcggcaga
       61 ccgaacatgc cgccggccgc gagcacgtat cccgcggcga gacccacgga aatcgcgccg
      121 atcgcaacat ccaggcgacg ccggaacgcg ggcagcatca gcatcgcgca ccaggccgcg
      181 atgccggcgg cgatcaaatg gagtcgccag cgctccggtg cagggtagta gccgtacaag
      241 aactgcggca atcgttccgc cacgaacagc cagcaagcgc cgcggacctc gcagtgggtt
      301 cgcgcgctgc cgggaaacgt cgcgtcgagc acggcccact ggaacatcgg tggcgccgcc
      361 acgccgacga cgagcaacgc cagcaacagg gcgacggccg acgcgcgatt cggcgcaatg
      421 cgttgccaaa tgctcggcga atgagcccgg cccgtccgga ggttcgattg cacgctaacg
      481 ttccatcgcg acgcggcgct cgtacccatg caccgcgccg gcgatcgtca tgctcatgac
      541 gaggtagacc gccatcgtca acgcgatcac ctcgaccgcc tggccggtct ggttcaacgt
      601 ggtcttgccg aaaacctgca tcaggtccgg aaacccgacc gccgcagcca gcgacgacgc
      661 cttgatcacg ttgatgtact ggctggcgag cgccggcagg caggcgcgca gcgcctgcgc
      721 caggacgacg ccgcgaatcg tggcggcccg gtcgaggccc agcgcgaacg cggcgtgcca
      781 ttgccccgca ggcacggcca ggaacccgct gcggaaggtc tcggcgatga acgccgccga
      841 atacaggctc agcgcaacga ccagcacggc gagctcgggg accagcgcga tgccgccttc
      901 gacgttgaaa ccgagcacct tgggcacgac ccagtccatc gacgccagcg tgctcgccgc
      961 aagggcgacg gcgatgatcg ccgtcagcgc gagcaccggg cgcccgagag atctgcgtcg
     1021 gctgagccac ccatatgcgg ccaacaggag caccagcgcg atggccgcga gcgctgcgcg
     1081 cgccgtcatg ccggccgacg gcaggaagat gccgcggttg ttgacgagag ccaatccgac
     1141 aacagtgatc gagtctcgcg gtggcggaag gaccgcgagg ctgaccgcgt agagcgcgag
     1201 cagctggaac aggagcggcg tgttgcggat cgcctcgaca tacatcgtgg cggctgcctt
     1261 gatcgccggg atcggcgcga gccgcgcgac ggcgacgaga agaccgatgg ccgtccccag
     1321 cacgaccgac aacccggaga ccagcagcgt gttgagcagc gcgacgacga acgcgcggcc
     1381 gtagctgtcc gtcgaatcga accggatcag cttgaagccg atctcgaagc cggcggtgtt
     1441 cttcaggaat ccgaagccgg cctggatgcc gcgcatgcgc atcacctcga tcgcgtacag
     1501 cgcggcggcg accgcaagcg cggccaccgc caggtagatc agcagctgga tcggtagtgc
     1561 gcgccttccc ggcggacgca actgctacct cactggaagg agggcgagaa catcaaccct
     1621 cccttgctcc acaggcgatt cagcccatcg cgcgggatcg cgaccgcgcc tttgggaccg
     1681 agattgcgct cgtagatctc gccgtagttg ccgacggcct tgatcgcgtt gaatgcccac
     1741 gcgttgtcca gacccatgag cttgccgagc tcgccgtcgg cacccagcag acgccgcgtc
     1801 tccggatcct tggatgtcgc cttcatctgg tcgacattgg ccgacgtgac gccgagctct
     1861 tcggcggcga ccagcgcgtt cacggtccag cggacgatgt tggcccattg cccgtcgccc
     1921 tggcgcacca ccgggccgtt ggcggccttc gagatcgtct ccggcaggat cacgtgcgcg
     1981 cccggatcct tgagcttgcc caggcgtgcg gcgagcgtgg acttgtcggt ggtataggcg
     2041 tcgcagcgct gcgcctcgta ggccgcgacg acctggtcgg tcgtctcgaa cacgaccggc
     2101 gtgtacttca tcgaatgcga gcggaaatag tcggcgaggt tcaactccgt cgtcgtgccg
     2161 gtctgcgtgc acaccgtcgc gccatccagc cctttcagtc cctttgcggc aagcgccttg
     2221 cgcaccatga agccctggcc gtcgaagaac gtcacgcctg aaaaagtcag cccaagcccc
     2281 gcgtcgcgcg ccagcgtcca ggtcaccgac cgcgacaaca ggtcgacctg gcccgattgc
     2341 agctgcgcga agcgcgtcgc aggtgtcgcc ggcagatact tgaccttgtc cgcaacgccg
     2401 aagatcgcgg ccgacaacgc gcgacagacg tcgacgtcga gccccgacca tttcccggcg
     2461 ctgtcgggcg caaagaaccc ggcgaagttc tcgccgacgc cgcagttgac gaagccgcgt
     2521 tcgcgcacgc tgtccagcgt tgccgcggac gcaaccgacc cgagagttcc ggtggcgacg
     2581 accgcgatca gtgcagcaag tttcttcatt gaggcgattc
//
LOCUS       DASVHM010000697         3726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_989596, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000697 DASVHM010000000
VERSION     DASVHM010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3726
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_989596"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            375..2081
                     /gene="acsA"
                     /locus_tag="VF308_12875"
     CDS             375..2081
                     /gene="acsA"
                     /locus_tag="VF308_12875"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009896300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEX7437596.1"
                     /translation="MPDYEAEHARFSWDEARRAFETPRPACGLNMAHEAVDRHALGAR
                     ADRLALRWLGKAGATRDVTYRELGELSSRFANAIDALGLRTGDHVFLLAGRIPELYVA
                     MLGALKHRCVVTPLFSAFGPEPIATRMTLGAARLLVTTASLYRRKVEPVRQDLATLEN
                     VLLVRDDDAPLPPGTQDLRRLLDAAGSRYTIAPTDPETPALLHFTSGTTGKPKGALHV
                     HAAIVAHVVTGRLALDLRPDDVYWCTADPGWVTGTSYGILAPLALGVTQIVDEAEFDA
                     ERWYNILQREQVSVWYTAPTAVRMMMRGGAAAAQAHACPSLRFIASVGEPLNPQAVRW
                     GLDAFGLPIHDNWWQTETGGIMIANYLSMDIRPGSMGKPLPGIEAAIVQRLPGGEVLP
                     VDDPAVEGELALRRGWPSMFRAYLNEDERYRKCFVGDWYLTGDLARRDGDGYYWFVGR
                     ADDMIKSSGHLIGPFEVESALMEHPAVHEAGVIGKPDPIVGEVVKAFVALRPGVEPSD
                     ALRRELLGFARQRLGAAVAPKDIAFTDRLPKTRSGKIMRRLLRARELGLPEGDTSTLE
                     AT"
     gene            2078..3043
                     /gene="pdhA"
                     /locus_tag="VF308_12880"
     CDS             2078..3043
                     /gene="pdhA"
                     /locus_tag="VF308_12880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009899782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HEX7437597.1"
                     /translation="MKLAAQEAWQLLWQMLRIRRFEEKCAELYGAGKIRGFLHLYIGE
                     EAIAAGAIPELRADDSLLCTYREHGHALVRGVPMGAVMAEMFGKREGCSRGRGGSMHL
                     FDAGRRFFGGSAIVGGAMPMAAGFALAEQLRRSDRIAACFFGEGAVAEGEFHETANLA
                     ALWRLPLLMLCENNLYAMGTALDRSESDTDLCEKARSYRMRAVSVDGMNVSAVRNAMR
                     DAVAHARRGEGPMFVEFRTYRFRAHSMFDPELYRSRAEVELWKQRCPITALQAHAANL
                     GLDLDVPAIEREVADEIAAAVAYAEAGTLEAVEDLARDVTAEGVP"
     gene            3040..>3726
                     /locus_tag="VF308_12885"
     CDS             3040..>3726
                     /locus_tag="VF308_12885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019255763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HEX7437598.1"
                     /translation="MSVRTTYRDALRLGLRAALLGDERVFLMGEDVGRYGGTYAVSKG
                     LLEEFGDARVRDTPLSESAFVGCGIGAAINGLKPIVEVMTVNFSLLALDQIVNNAATL
                     RHMSGGQLSVPVVIRMTSGAGRQLAAQHSHSLEVWYAHVPGLRVLAPATLEDARGMLL
                     AALGTADPVIIFEHALLLTAEGELEGEPAPVDLVHAAVRRMGRDVSLITYGGSLPRCL
                     AAAERLAAEGI"
BASE COUNT          574 a         1294 c         1301 g          557 t
ORIGIN      
        1 acccgcccga cgcagcggct cgcgtgcggc cgactcgacg gcttccgacg gctccatgcc
       61 gaggaagcga atttgcagag gctgtttcat ggccaccttt cagaacgccc ttcacgaaga
      121 acgcccttca cgatgacgca acttacgtgg cccgggtctg atatggctca agtgcaggcg
      181 ctcctgcggg acaaagaatc aactcgcccg tttcgatggc cggaggcgga tgcccgtttg
      241 ggtcggcccc ggagcagctc gccatgaacc cccgaatcct cgtaccgccg tatgagaatc
      301 ccgagcgatc atctcgatcg ggtgggcaag ctgtggaggc catccgcaag ccggtacctt
      361 cgcggccagc caacatgccc gactacgagg ccgaacacgc gcgcttcagc tgggacgaag
      421 cgcgccgcgc attcgagaca ccgaggccgg cctgcggcct caacatggct cacgaggcgg
      481 tggaccgcca tgcgctgggc gcgcgcgccg acagacttgc cctgcgctgg ctcggcaagg
      541 ccggcgccac gcgcgacgtc acctatcgcg aactcggcga gctgagcagc cgcttcgcca
      601 acgcgatcga tgccctgggg ctgcgtacag gcgatcacgt gttcctgctc gccggccgaa
      661 tccccgagct gtacgtggcg atgctgggcg ccctcaagca ccgctgcgtc gtcacgccgc
      721 tgttctcggc cttcggcccc gagccgatcg cgacgcgcat gacgctgggt gcggccaggc
      781 tgctcgtcac gacggcctcg ctgtaccgca ggaaggtcga gccggtgcgc caggatctgg
      841 ccacgctcga gaatgtgctg ctggtgcgcg acgacgatgc gccgttgcca cccggcacgc
      901 aggacctgcg ccggctgctc gatgcggcgg gaagccgcta caccatcgct cccacggacc
      961 cggagacccc ggccctgctg cacttcacca gcggcaccac cggcaaaccc aagggggcgc
     1021 tgcacgtgca cgcggcgatc gtcgcccacg tggtcaccgg ccggctcgcg ctcgacctgc
     1081 ggcccgacga cgtgtactgg tgcacggcgg accccggatg ggtgaccggc acctcctacg
     1141 gcatcctcgc gccgctggcg ctgggcgtca cgcagatcgt cgacgaagcc gagttcgacg
     1201 ccgaacgctg gtacaacatc ctgcagcgcg agcaggtcag cgtctggtac accgcgccga
     1261 cggcggtgcg catgatgatg cgcgggggtg ccgcggcggc acaagcccac gcctgccctt
     1321 cgctgcgctt catcgccagc gtgggcgagc cactcaaccc acaggccgta cgctgggggc
     1381 tggacgcctt cggcctgccg atccacgaca actggtggca gaccgagacc ggtggcatca
     1441 tgatcgccaa ctacctgtcg atggacatcc gcccgggatc gatgggcaag ccgctgccgg
     1501 ggatcgaggc ggccatcgtg cagcgcctgc cgggcggcga ggtcctgccg gtcgacgacc
     1561 cggcggtcga aggcgaactg gcactgcggc gcggctggcc ctcgatgttt cgcgcctacc
     1621 tgaacgagga cgaacgctac cgcaagtgct tcgtcggcga ctggtacctg accggggacc
     1681 tcgcgcgacg cgatggcgac ggctactact ggttcgtcgg gcgggccgac gacatgatca
     1741 agtcctccgg ccacctgatc ggcccgttcg aggtcgagtc ggcgctgatg gagcacccgg
     1801 cggtccacga ggccggtgtc atcggcaagc cggatccgat cgtcggcgaa gtggtcaagg
     1861 cgttcgtcgc gctgcgcccc ggcgtcgagc cgagcgatgc gctgcggcgc gagctgctcg
     1921 gcttcgcacg ccagcgcctg ggcgcggcgg tggcgcccaa ggacatcgcg ttcaccgatc
     1981 gcctgcccaa gacgcgcagc ggcaagatca tgcggcgcct gctgcgcgcg cgtgagctcg
     2041 gcctacccga aggcgacacg tccacgctgg aggcgacatg aagctcgcgg cgcaggaggc
     2101 atggcaactt ctgtggcaga tgctgcgcat ccgccgcttc gaggagaaat gcgccgagct
     2161 ctacggcgcc ggcaagatac gcggcttcct gcatctgtac atcggcgagg aggccattgc
     2221 cgccggcgcg atccccgagc tgcgcgccga cgacagccta ttgtgcacct accgcgagca
     2281 cggccatgcg ctggtgcgcg gcgtcccgat gggcgcggtg atggccgaga tgttcggcaa
     2341 acgcgagggc tgcagccgcg gccggggcgg ctcaatgcac ctgttcgacg ccggccggcg
     2401 cttcttcggc ggcagtgcca tcgtcggcgg cgccatgccg atggcagccg gctttgcgct
     2461 ggccgagcag ctgcgccgga gcgaccgcat tgccgcctgt ttcttcggcg agggcgcagt
     2521 ggccgaaggc gaattccacg aaaccgccaa cctcgccgcg ctgtggcgcc tgccgctgct
     2581 gatgctgtgc gagaacaacc tctatgcgat gggcacggca ctggaccgct cggagtcgga
     2641 caccgacctg tgcgagaagg cgcgcagcta tcggatgcgg gcggtgtcgg tggacggcat
     2701 gaacgtttcg gccgtgcgca acgcgatgcg cgatgccgtg gcgcatgcgc gccgcggcga
     2761 aggaccgatg ttcgtcgagt tccgcaccta ccgcttccgc gcgcactcga tgttcgaccc
     2821 cgagctgtac cgctccaggg ccgaagtcga actctggaag cagcgctgcc cgatcaccgc
     2881 cctgcaggcc cacgcggcga acctggggct cgacctcgat gtcccggcca tcgagcgcga
     2941 ggtcgcggac gagatcgccg cggcggtcgc ctacgccgag gccgggaccc tcgaagccgt
     3001 ggaggacctg gcgcgcgacg tcacggcgga gggggtgcca tgagtgttcg caccacctac
     3061 cgcgatgccc tgcgcctggg cctgcgcgcg gcgctgctcg gcgatgagcg cgtgttcctg
     3121 atgggcgagg acgtgggccg ctatggcggc acttatgccg tcagcaaggg cctgctcgaa
     3181 gagttcggtg acgcgcgggt gcgcgacacg ccgctgtcgg agtcggcctt cgttggctgc
     3241 ggcatcgggg cggccatcaa cggcctgaag ccgatcgtcg aggtgatgac cgtcaacttc
     3301 agcctgctgg cgttggacca gatcgtcaac aacgccgcca ccttgcgcca catgtcgggt
     3361 ggccagttga gcgtgccggt ggtgatccgc atgaccagcg gcgccggccg ccagctggcc
     3421 gcgcagcatt cgcacagcct ggaagtctgg tacgcacacg tgccggggct gcgcgtgctg
     3481 gcgccggcca cgctggagga cgcgcgcggc atgctgctcg ccgcgctcgg caccgccgat
     3541 ccggtgatca tcttcgaaca cgcgttgctg ctgactgccg agggcgagct cgagggcgaa
     3601 ccggcgccgg tggacctcgt ccatgcggcc gtgcggcgca tgggtcgcga cgtcagcctc
     3661 atcacctacg gcggctcgct tccgaggtgc ctggcagcgg ccgagcggct cgccgccgag
     3721 gggatc
//
LOCUS       DASVHM010000698         1511 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_336352, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000698 DASVHM010000000
VERSION     DASVHM010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336352"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..141
                     /locus_tag="VF308_12890"
     CDS             <1..141
                     /locus_tag="VF308_12890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEX7437599.1"
                     /translation="AGLMISVTAERVVRLLPALIMTAEEAGQVVALLCPLIRDFLSST
                     PA"
     gene            138..1070
                     /gene="argF"
                     /locus_tag="VF308_12895"
     CDS             138..1070
                     /gene="argF"
                     /locus_tag="VF308_12895"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEX7437600.1"
                     /translation="MKPGMALIKHYLQFRDFRAEEYAYLFERTATIKKRFKNYEKYTP
                     LVDRTLAMIFEKASTRTRVSFEAGMYQMGGSVVNLTTGDSQLGRAEPAEDTARVISRM
                     VDIVMIRTFEHAKLEAFAAHSRVPVINGLTNEYHPCQILADVFTCIEQRGSIEGKVVA
                     WVGDGNNMANTWLQAADILGFTLHVSTPSGYGIDAGVAGVTNTKCLKVFKSPLEACRG
                     AHLVTTDVWTSMGFEAENAARMKAFADWRVDREMMAAARPDALFMHCLPAHRGEEVDA
                     EVIDGPHSVVWDEAENRLHVQKALMEYLVLGRIG"
     gene            1076..>1511
                     /locus_tag="VF308_12900"
     CDS             1076..>1511
                     /locus_tag="VF308_12900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEX7437601.1"
                     /translation="MKLALVADLHANREAVVATLAHAREQGAQRYAFLGDFVGYGTDP
                     GWVVDRVREHVANGAVAVLGNHDAAVVQGPMRSMMPDARKVVEWTRARLEPAQLDFLA
                     TLPLSVTEPEILFVHANAWAPNEWEYIMGRADAVRSLLATDRR"
BASE COUNT          267 a          525 c          496 g          223 t
ORIGIN      
        1 gccgggctca tgatcagcgt cacggccgag cgcgtcgtcc gcctgctgcc ggcactgatc
       61 atgaccgccg aggaggccgg gcaggtcgtc gccctcctct gcccgctgat cagggatttc
      121 ctgagcagca cgcccgcatg aaacccggca tggccctgat caagcactac ctgcagttca
      181 gggacttccg cgccgaggag tacgcctatc tgttcgagcg cacggcgacg atcaagaagc
      241 gcttcaagaa ctacgagaag tacacgcccc tggtcgaccg cacgctggcg atgatcttcg
      301 agaaggcctc gacgcgcacg cgcgtgagct tcgaggccgg catgtaccaa atgggcggct
      361 cggtcgtgaa cctgaccacc ggcgacagcc agctcggccg cgccgagccc gcggaggata
      421 cggcgcgggt catcagccgc atggtcgaca tcgtcatgat ccgcaccttc gagcacgcca
      481 agctcgaagc cttcgccgcg cattcgcgcg tgccggtgat caacggcctg acgaacgagt
      541 accacccctg ccagatcctc gccgacgtct tcacctgcat cgaacagcgc ggctcgatcg
      601 aaggcaaggt cgtcgcctgg gtcggcgacg gcaacaacat ggccaacacc tggctgcagg
      661 ccgccgacat cctcggcttt acgctccatg tcagcacccc gagcggctac ggcatcgatg
      721 ccggggtcgc gggcgtgacg aacaccaaat gcctgaaggt gttcaagagc ccgctcgagg
      781 cctgccgcgg cgcccacctc gtgacgacgg acgtctggac aagcatgggc ttcgaggccg
      841 agaacgccgc gcgcatgaag gccttcgccg actggcgcgt cgatcgcgag atgatggccg
      901 cggcgcgacc cgatgcgctc ttcatgcatt gcctgcccgc gcaccgcggc gaagaggtcg
      961 acgccgaggt gatcgacggc ccgcactcgg tggtctggga cgaagccgaa aaccgcctgc
     1021 acgtgcagaa ggcgctgatg gaatacctgg tcctcggacg catcggctag gcgccatgaa
     1081 actcgcgctc gtggcggacc tgcacgccaa tcgcgaggcg gtcgtggcga cgctggcgca
     1141 cgcccgcgag cagggggcgc agcgctatgc cttcctcggc gacttcgtcg gctacggcac
     1201 cgaccccggc tgggtcgtcg accgggtccg cgagcacgtc gcgaacggcg ccgtcgcggt
     1261 cctcggcaac cacgacgctg ccgtcgtgca gggcccgatg cgaagcatga tgcccgatgc
     1321 ccgcaaggtg gtggaatgga cgcgcgcccg gctggaaccg gcacagctcg atttcctggc
     1381 gacgctgccg ctttcggtca ccgaacccga gatcctgttc gtgcacgcca acgcctgggc
     1441 gccgaacgag tgggagtaca tcatgggccg cgcggacgcg gtccgcagcc tgcttgcaac
     1501 ggatcgccgc t
//
LOCUS       DASVHM010000699         2774 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_772405, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000699 DASVHM010000000
VERSION     DASVHM010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2774
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_772405"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..694
                     /gene="aat"
                     /locus_tag="VF308_12905"
     CDS             <1..694
                     /gene="aat"
                     /locus_tag="VF308_12905"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEX7437602.1"
                     /translation="PGLLAAGGTLTPRRLEEAYSHGVFPWYGEGQPVLWWSPDPRMVL
                     LVDEFKLSRSLRKRLARFVRTAGCEVRIDSAFRRVIEACAGTPREGQDGTWIVPEMVE
                     AYCEWHALGRVHSVETWIDGELAGGLYGASLGRMFFGESMFAHRTDVSKIALAALVCF
                     CREHAVPMIDCQQRSGHLASLGGRELGRAEFEGRLRTALHAPSIDEWSYDPQLWRHLG
                     PDGLLIPDPPPP"
     gene            691..1437
                     /locus_tag="VF308_12910"
     CDS             691..1437
                     /locus_tag="VF308_12910"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004057 - arginyl-tRNA--protein
                     transferase activity [Evidence IEA];
                     GO_process: GO:0016598 - protein arginylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HEX7437603.1"
                     /translation="MTHPKELPLASLQFYATAPYPCSYIEGRMARSQVATPSHLIHAD
                     AYSGLVANGFRRSGMFTYRPYCDGCRACLPLRVPVETFKPTRSQKRAVKAHSRLEARV
                     LRLGFVPEHYQLYLRYQAGRHIGGGMDHDSIDQYTQFLLQSRVNSRLVEFREPSPDCR
                     GALKMVSILDILNDGLSAVYTFFEPEPRTSYGTYNVMWQIEQARLLRLPHVYLGYWIG
                     RSEKMAYKAQFGPHEVLVNGQWQPPGPATL"
     gene            complement(1397..2569)
                     /locus_tag="VF308_12915"
     CDS             complement(1397..2569)
                     /locus_tag="VF308_12915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX7437604.1"
                     /translation="MERVDAVVAGAGVVGLAIGRALAVRGLETVVLEAESGIGTGISS
                     RNSEVIHAGLHDAPAALKTRLCVAGRHALYAYCESHGVAHRRCGKLVVATSAAQVDAL
                     RTIEARGRANGVAGLRWLDATQAQALEPDLRCEAALLSPVTGIVDSRALMLALQGDLE
                     RAGGVLVLRSPLQRALVSDRGFRLQVGGDAPSELAAGVLVNAAGLRAFELAGRIDGLA
                     PGHVPAPHFAKGNYFALGGRSPFTRLIYPVPEPGGLGVHLTLDLAGQARFGPDVEWLA
                     PGSPDAIDYAVDPARGSAFYAAIRRYWPLLPDGALAPAYSGVRPKLRGPGAAPADFML
                     QGPAQHGVAGLMNLYGIESPGLTASLAIADEVVARLGVGGAPAVRGLPDPAAATVR"
     gene            complement(2591..>2774)
                     /locus_tag="VF308_12920"
     CDS             complement(2591..>2774)
                     /locus_tag="VF308_12920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA alkylation response protein"
                     /protein_id="HEX7437605.1"
                     /translation="ARSVVERMALALQASILLHGGSAAVATSFCASRLGGEHGAAFGT
                     LAPGAAIDTLIERSAV"
BASE COUNT          427 a         1015 c          945 g          387 t
ORIGIN      
        1 tcccggcctg ctcgccgccg gtggcacgct cacgccgcgg cgcctcgaag aggcctactc
       61 gcacggcgtc tttccctggt acggcgaggg gcagcccgtg ctgtggtggt cgccggaccc
      121 gcgcatggtg ctgctggtgg acgagttcaa actctcgcgg tcgctgcgca agaggctcgc
      181 gcgcttcgtg cggaccgccg gctgcgaggt gcgcatcgac agcgccttcc ggcgcgtgat
      241 cgaagcctgc gccggcacgc ctcgcgaggg ccaggacggc acctggatcg tgccggaaat
      301 ggtcgaggcg tactgcgagt ggcatgcgct gggccgggtc cacagcgtcg agacatggat
      361 cgacggcgag ctcgccggcg gcctctacgg cgcgagcctc ggccggatgt tcttcggcga
      421 gtcgatgttc gcgcatcgca ccgacgtgtc gaagatcgcg ctggcggcgc tggtctgctt
      481 ctgccgcgag cacgcggtgc cgatgatcga ctgccagcag cgcagcggtc acctcgcctc
      541 gctcggcggg cgcgaactcg ggcgcgccga attcgaaggc cggctgcgca cggcgctgca
      601 cgcgccttcg atcgatgaat ggtcctatga tccgcaactg tggcgccatc tgggaccgga
      661 tggccttctg attccagacc caccaccccc gtgacccatc cgaaagaact tccgctcgcc
      721 tcgctccagt tctacgccac ggcgccctac ccgtgcagct acatcgaggg ccggatggca
      781 cgctcgcagg tcgccacgcc gagccacctg atccatgccg acgcctactc ggggctcgtc
      841 gcgaacggct tccggcgcag cggcatgttc acctatcggc cgtattgcga tggctgccgc
      901 gcctgcctgc cgctgcgggt gccggtcgag accttcaagc cgacgcgcag ccagaagcgc
      961 gccgtcaagg cgcattcccg gctcgaggcg cgcgtgctgc gcctgggctt cgtgcccgag
     1021 cactaccagc tctatctgcg ctaccaagcc ggacgccaca tcggcggcgg catggaccac
     1081 gactcgatcg accagtacac ccagttcctg ttgcaaagcc gggtcaactc gcgcctcgtc
     1141 gagttcaggg agccctcgcc cgattgccga ggcgcgctga agatggtgtc gatcctcgac
     1201 atcctcaacg acgggctatc ggccgtctac accttcttcg aacccgagcc gcgcaccagc
     1261 tacggcacct acaacgtgat gtggcagatc gagcaggcgc gtctgctgcg gctgccgcac
     1321 gtctacctcg gctactggat cgggcgcagc gagaagatgg cctacaaggc ccagttcggc
     1381 ccgcacgagg tgctcgttaa cggacagtgg cagccgccgg gtccggcaac cctctgacgg
     1441 ccggcgcgcc tcccacgccg agccgggcga ccacctcgtc ggcaatcgcg aggctcgcgg
     1501 tcagaccggg cgactcgatg ccgtagaggt tcatcagccc ggccacaccg tgctgcgcgg
     1561 ggccctgcag catgaagtcg gccggcgctg cacccgggcc ccgcagcttc ggccgcacgc
     1621 cgctgtaggc cggcgccagg gcgccatcgg gcagcagcgg ccagtagcgc cggatcgcgg
     1681 cgtagaaggc gctgccccgg gccggatcga ccgcatagtc gatggcatcc ggcgacccgg
     1741 gcgctagcca ttcgacatcg ggtccgaagc gcgcctgacc cgccaggtcg agggtcaggt
     1801 gcacaccgag cccgcccggc tcgggcaccg gatagatcag gcgcgtgaac ggcgagcggc
     1861 cgccgagggc aaagtaattg cctttcgcga agtgcggcgc cggaacatgc ccgggcgcaa
     1921 gcccatcgat ccggccggcg agttcgaaag cgcgcagccc ggccgcattg accagcacgc
     1981 cggccgcgag ttcggacggg gcatcgccgc cgacctggag ccgaaagccg cgatccgaga
     2041 cgagcgcgcg ctgcagcggc gagcgcagca cgagcacgcc gccggcgcgc tccaggtcgc
     2101 cttgcagcgc gagcatcagc gcgcgactgt cgacgatgcc cgtcaccggc gacagcagcg
     2161 ccgcttcgca acgcaggtcc ggctccagcg cctgtgcctg cgtggcgtcg agccagcgca
     2221 acccggccac gccgttcgcc cgtccgcgcg cctcgatcgt gcgcagcgca tcgacctgtg
     2281 cggccgaggt cgcgacgacg agcttgccgc agcgccgatg cgccacgccg tgcgattcgc
     2341 aataggcata gagcgcgtgc cggccggcga cgcacaaacg cgtcttcagc gcagcgggcg
     2401 cgtcgtggag cccggcgtgg atgacctcgc tgttgcgcga actgatgccg gtgccgatgc
     2461 cggattcggc ctcgaggacc acggtctcga gcccgcgcac ggcgagcgcg cggccgatcg
     2521 cgagcccgac cacaccggct cccgcgacca ccgcatcgac tcgctccacc gtcctcgctc
     2581 gaattcgagg tcagacggcg ctgcgttcga tcagcgtgtc gatcgcggca ccgggggcga
     2641 gcgtgccgaa ggcagcccca tgctcgccgc ccagacggga ggcgcagaag ctcgtcgcca
     2701 cggcagcgct gccgccgtgc aacaggatcg acgcctgcag cgcgagcgcc atgcgctcga
     2761 ccacgctgcg cgcg
//
LOCUS       DASVHM010000700         3032 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_410984, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000700 DASVHM010000000
VERSION     DASVHM010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3032
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410984"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>3032)
                     /locus_tag="VF308_12925"
     CDS             complement(<1..>3032)
                     /locus_tag="VF308_12925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007860362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indolepyruvate ferredoxin oxidoreductase family
                     protein"
                     /protein_id="HEX7437606.1"
                     /translation="KREALAGLNTAGFISGYRGSPLGGYDQALWQAKTHLAAQNIVFQ
                     PGVNEELAATAVWGSQQLDLYPQAKKFDGVFGIWYGKGPGVDRCSDVFKHANMAGTSK
                     HGGVIALAGDDHIAKSSTAAHQSDHIFKACGLPVFFPSSVQDILDMGLHALAMSRFAG
                     VWSAMKTIQEVVESSASVFVDPDRVDIVLPTDFAMPAGGLHIRWPDPPLEQEARLMDY
                     KWYAALAYVRANKLNHNVIAGPNDRFGIIASGKAYNDTHQALHDLGLDDDACRRLGIR
                     LHKVNVVWPLEATITRDFAQGLQEILVVEEKRQVIEYQLKEELYNWRADVRPNVLGKF
                     DEGDGSGGEWSQPNPSQNWLLRAQADLSPAIIARALAKRLKKLGGGTALDRDTAARID
                     ARIALIDAKERSLEVKNISTSAGERIPYFCSGCPHNTSTKVPEGSRAVAGIGCHYMAV
                     WMNRSTVSFSQMGGEGVSWVGQAAFTTDKHVFANLGDGTYFHSGLLAVRQSIAAKVNI
                     TYKILFNDAVAMTGGQPIDGTLQVPEMTRELDAEGAKTIVVVTDEPEKYTGAVKARLA
                     PGVTVHHRDDLDAVQRELREIEGCTVIVYDQTCATEKRRRRKRGTMVEPAKRVVINEL
                     VCEGCGDCSVQSNCLSVEPVETEFGRKRRINQNTCNKDYSCVKGFCPSFVTVEGGRMK
                     SAKNAAPERPNPFTLPALPEPALPVAEAPWGIIVAGVGGTGVITIGQLLGMAAHLEGK
                     GVVTQDSAGLAQKGGATWSHIQIANRMEAINTTKVGTAEADLVIGCDPIVAANKATLA
                     VMREGRTYVALNTHGSPTAAFVTNPDWQFPTGNCEAAIAAAAGAAQLGEIDADQLAVQ
                     LVGDSLYTNPLLLGFAWQKGRVPLSHAALVRAIELNGVQVDNNKAAFEWGRRAAHDLA
                     SVQALVKPGQVIEFVRKAVNLDEMIAKRVDFLAGYQNAAYAAEYKSFTERVRVAEVPL
                     NSKKLTEAVARYLFKLMAYKDEYEVARLHTETGFLERVA"
BASE COUNT          423 a          980 c         1044 g          585 t
ORIGIN      
        1 gcgaccctct cgaggaagcc ggtctcggtg tggaggcgcg cgacctcgta ttcgtccttg
       61 taggccatca gcttgaacag gtagcgggcg acggcttcgg tcagcttctt gctgttcaaa
      121 ggcacttcgg ccacacgaac cctctcggtg aaggacttgt actcggccgc atacgcggcg
      181 ttctggtagc cggcgagaaa gtcgacccgc ttcgcgatca tctcgtcgag gttcacggcc
      241 ttgcggacga actcgatcac ctgtccgggc ttgaccagcg cctgcaccga cgcgaggtcg
      301 tgcgcggcgc gccggcccca ttcgaacgcg gccttgttgt tgtcgacctg gacgccgttg
      361 agctcgatcg cacgcaccag tgcggcgtgg ctcagcggca cgcggccctt ttgccaggcg
      421 aagccgagca gcagcgggtt ggtgtagagc gagtcgccga cgagttgcac cgcgagctgg
      481 tcggcatcga tctcgcccag ctgcgccgcg cctgctgccg cggcgatcgc cgcttcgcag
      541 ttgccggtcg ggaattgcca gtcggggttg gtcacgaagg ccgccgtcgg cgagccgtgc
      601 gtgttcaggg cgacataggt gcggccttcg cgcatcaccg cgagcgtcgc cttgttggcg
      661 gcgactatcg ggtcgcagcc gatcacgagg tcggcctcgg cggtgccgac cttggtggtg
      721 ttgatcgctt ccatccggtt cgcgatttgg atgtggctcc aggtcgcgcc gcccttttgc
      781 gcgaggccgg ccgagtcttg cgtgacgacg cccttgcctt cgaggtgcgc cgccatgccg
      841 agcaactggc cgatcgtgat cacgccggtg ccgccgacgc cggcgacgat gatgccccac
      901 ggcgcttcgg caacgggcag cgcgggctcg ggcagggcag gcagcgtgaa cgggttcggg
      961 cgctccggcg cggcgttctt cgcgctcttc atccggccgc cctcgacggt gacgaagctc
     1021 gggcagaagc ccttcacgca ggagtagtcc ttgttgcacg tgttctggtt gatgcggcgc
     1081 ttgcgcccga actcggtctc gaccggttcg acgctgaggc agttgctctg caccgagcag
     1141 tcgccgcagc cttcgcagac caactcgttg atgacgacgc gcttggccgg ctcgaccatg
     1201 gtgccgcgct tcctgcgccg gcgtttttcg gtcgcgcagg tctggtcgta gacgatgacg
     1261 gtgcagcctt cgatttcgcg cagctcgcgc tgcaccgcgt cgaggtcgtc gcggtgatgc
     1321 accgtgacgc cgggtgcgag gcgggccttg acagcgcccg tgtatttctc cggctcgtcg
     1381 gtcacgacga cgatcgtctt cgcgccttcg gcatcgagtt cgcgcgtcat ctcgggtacc
     1441 tgcagcgtgc cgtcgatcgg ctggcccccg gtcatcgcca ccgcgtcgtt gaagaggatc
     1501 ttgtaggtga tgttgacctt ggccgcgatg ctttgtcgca ccgcgagcag gcccgagtgg
     1561 aagtaggtgc cgtcgccgag gttcgcgaag acgtgcttgt cggtcgtgaa cgccgcctgg
     1621 ccgacccacg agacgccttc gccgcccatc tggctgaagg agacggtcga gcggttcatc
     1681 cagaccgcca tgtagtggca gccgatcccg gcgaccgcgc gcgaaccttc cggcaccttg
     1741 gtgctggtgt tgtgcgggca gccgctgcag aagtacggaa tgcgttcgcc ggccgaggtc
     1801 gagatgttct tcacctcgag gcttctttcc ttcgcgtcga tcagcgcgat gcgggcgtcg
     1861 atgcgcgccg cggtgtcgcg atcgagggcc gtgccgccgc cgagtttctt caggcgcttg
     1921 gccagcgctc ttgcgatgat cgcgggtgag aggtcggctt gggcgcgcag cagccagttc
     1981 tggctcggat tcggctgcga ccattcgccg ccgctgccgt cgccctcgtc gaacttgccg
     2041 agcacgttcg ggcgcacgtc ggcgcgccag ttgtagagct cttccttgag ctggtattcg
     2101 atgacctggc gcttctcctc gacgaccagg atctcctgca agccctgggc aaagtcgcgc
     2161 gtgatcgtcg cctcgagcgg ccaaacgaca ttgaccttgt gcagccggat gccgaggcgc
     2221 cggcaggcat cgtcatcgag cccgaggtcg tgcagggcct ggtgcgtgtc gttgtaggcc
     2281 ttgccggagg cgatgatgcc gaagcggtcg ttcggcccgg cgatgacgtt gtggttgagc
     2341 ttgttcgcac gcacataggc gagcgcggca taccacttgt agtccatcag ccgcgcttcc
     2401 tgttcgagcg gcgggtcggg ccagcggatg tgcaggccgc cggccggcat cgcgaagtcg
     2461 gtgggcaaca cgatgtcgac gcgatccggg tcgacgaaca cgctggccga cgattcgacg
     2521 acttcctgga tcgtcttcat ggccgaccac acgcccgcga agcggctcat cgcgagcgcg
     2581 tgcagcccca tgtcgaggat gtcctgcacg ctcgacggaa agaagaccgg caggccgcag
     2641 gccttgaaga tgtggtcgct ctggtgcgcc gcggtcgaac tcttcgcgat gtggtcgtcg
     2701 ccggcgaggg cgatcacgcc gccgtgcttc gaggtgccgg ccatgttggc gtgcttgaac
     2761 acgtcggagc agcgatccac tcccggcccc ttgccgtacc agatgccgaa cacaccgtcg
     2821 aatttcttcg cctgcgggta gagatcgagc tgctgcgagc cccataccgc ggtcgccgcg
     2881 agctcttcgt tgacgcccgg ctgaaacacg atgttctggg cggcgagatg ggtcttggcc
     2941 tgccacagcg cctggtcgta gccgccgagc ggcgagccgc ggtagccgct gatgaaaccg
     3001 gcggtgttga gcccggccag tgcctcgcgt tt
//
LOCUS       DASVHM010000701         3491 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_990296, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000701 DASVHM010000000
VERSION     DASVHM010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3491
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_990296"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            118..1002
                     /locus_tag="VF308_12930"
     CDS             118..1002
                     /locus_tag="VF308_12930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013542861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HEX7437607.1"
                     /translation="MRMDGQDESQNVEDVRGMGGGGGGGFGIGGRSIGLGSVVVALIA
                     GWIFGINPLTLLGLAGGGAPIEQTAPRAPGPNPPANDPQAHFVRQVLRSTEVVWTDVF
                     REAGRTYRPPTLVLFKDSWPTACGRGQAAMGPFYCPNDQKVYIDLRFYDVLERKLGAP
                     GQFAQAYVVAHEVGHHVQQQLGIMDKVDALRGRAGEAQANALSVRVELQADCFAGVWA
                     KRSQQEQGWRLEPGDIETALNAAAQIGDDTLQRKSQGTVVPDTFTHGSSAQRVTWFKR
                     GIESGSVDQCNTFESRQG"
     gene            complement(1013..1279)
                     /locus_tag="VF308_12935"
     CDS             complement(1013..1279)
                     /locus_tag="VF308_12935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007848258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437608.1"
                     /translation="MTLDQLHTLKLWHQRHVGERPLEKQVWDAVLTLWLMGWVGGPTA
                     FLIHMRWAALTCVALLFLPGAYVALRRRLHRAGVLRCDWIAALR"
     gene            complement(1311..2456)
                     /locus_tag="VF308_12940"
     CDS             complement(1311..2456)
                     /locus_tag="VF308_12940"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hydroxy acid oxidase"
                     /protein_id="HEX7437609.1"
                     /translation="MPVITNIEDLRRIAQKRVPRMFYEYADAGSWTESTYRANEADFQ
                     GIKLRQRVAVDMENRTLRTKMVGIDTAMPVAIAPTGLTGMQHADGEILAAKAAEKFGI
                     PFTLSMMSICSIEDIAAHTKAPFWFQPYMLRDRGFMERLIDRAKAARCSALMLTLDLQ
                     ILGQRHKDLKNGLTAPPKPTLANLINLTTKPRWCLGMLGTKRRSFGNIVGHVEGIGDV
                     SSLSAWTAQQFDPTLSWADVEWVKKRWGGKLILKGILDVEDARLAADSGADALVVSNH
                     GGRQLDGAPSSIAALPAIADAVGSRIEVWMDGGIRSGQDVLKAWALGARGTLIGRAFL
                     YGLGAMGEAGVTRCLEIIYRELELTMAFCGHTDIHTVDRKILLPGTY"
     gene            complement(2567..>3491)
                     /locus_tag="VF308_12945"
     CDS             complement(2567..>3491)
                     /locus_tag="VF308_12945"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEX7437610.1"
                     /translation="YRKYSRLFKAAVRSIAPLVEDRGIDEIYIDLTDVPGAQEDAGRS
                     AAFRLKEAVLAATGLTCSVGVSPNKLLSKICSELDKPDGLTLLGLADIPARIWPLPAK
                     KVNGIGPKATLKLAGLGIHSIGDVAAADPALLVQHFGKSFGAWLHDAAHGRDDRPVVT
                     FSEPKSISRETTFDRDLHAVRDRAELSAIFTLLCEQLAGDLSRKGYASKTIGVKLRFD
                     DFKSVTRDLTLPAHTMDAADIRRAARACLKRVDLSRRLRLLGVRAGALATLAELLAPR
                     AASAEPPTRLVAREPDASDSLPLFDAAPPSG"
BASE COUNT          533 a         1139 c         1269 g          550 t
ORIGIN      
        1 ccctgcccaa gacctgaccc gtacgacggc aggacgcctg cgcgcgcggt cttctccgac
       61 agaccgggtc gcgggctccg ccctacgatc ctgccgacgg cgcagaggag acacgcgatg
      121 agaatggatg gccaggacga aagccagaac gtcgaggacg ttcgcggcat gggcggcggc
      181 ggtgggggcg ggttcggaat cggcggccgc agcatcggcc tgggatcggt cgtagtggcg
      241 ttgatcgccg gctggatctt cggcatcaac ccgctgacgc tgctcgggct ggccggcggt
      301 ggcgccccga tcgagcagac cgcgccgcgc gcgccggggc cgaatccgcc cgccaacgat
      361 ccgcaggcgc atttcgtcag gcaggtgttg agaagcaccg aggtggtgtg gacggacgtc
      421 ttccgcgagg ccggcaggac gtatcggccg ccgaccctgg tccttttcaa agacagctgg
      481 ccgacagcat gcgggcgcgg ccaggccgcg atgggcccgt tctattgccc caacgatcag
      541 aaggtctaca tcgacctgcg cttttacgat gtgctcgagc gcaagctcgg cgcgcccggg
      601 cagttcgccc aagcctacgt ggtcgcgcac gaggtcggcc accacgtgca gcagcagctc
      661 ggcatcatgg acaaggtcga tgcgttgcgc ggtcgcgcgg gtgaggctca ggccaacgcg
      721 ctgagcgtgc gggtcgaact gcaggccgat tgcttcgccg gcgtctgggc caagcgttcg
      781 cagcaggagc agggttggcg cctcgagccg ggcgacatcg agacggcgct caacgcggcc
      841 gcgcagatcg gcgacgacac gctgcagcgc aagtcgcagg gcacggtggt gccggacacc
      901 ttcacgcacg gcagcagcgc ccagcgcgtc acctggttca agcgcggcat cgagagcggc
      961 agcgtggacc agtgcaacac cttcgagagc cgccagggct agggcgcgac cgctagcgca
     1021 gcgccgcgat ccagtcgcag cgcaggacgc ctgcccggtg caggcgccgg cgcaacgcga
     1081 cgtaggcgcc cggcaggaag agcagtgcga cgcaggtcag cgcggcccag cgcatatgga
     1141 tcaggaacgc ggtcgggccg ccgacccagc ccatcagcca gagcgtcagc acagcgtccc
     1201 acacctgctt ttcgagcggg cgttcgccca cgtggcgctg atgccagagc ttgagggtgt
     1261 ggagctggtc cagcgtcacc gctgcctccc ggtcgggtgt cgctcacgcg tcaatacgtt
     1321 ccgggcagca gtatcttcct gtcgaccgtg tggatgtcgg tgtggccgca aaaggccatg
     1381 gtcagctcga gctcgcggta gatgatctcg aggcagcgcg tgacaccggc ctcgcccatc
     1441 gcgccgaggc cgtagaggaa ggcgcgcccg atgagggttc cgcgcgcgcc gagcgcccag
     1501 gccttgagca cgtcctgacc ggagcggatg ccgccgtcca tccagacttc gatgcgcgag
     1561 ccgacggcgt cggcgatcgc gggcagcgcg gcgatggagg acggtgcgcc gtcgagctgg
     1621 cgcccgccgt ggttcgagac gacgagcgcg tcggcgccgc tgtcggcggc gagccgcgca
     1681 tcctcgacgt cgaggatgcc cttgaggatc agcttgccgc cccagcgctt cttgacccac
     1741 tcgacgtcgg cccagctcag cgtcgggtcg aactgctgcg ccgtccaggc gctcagcgac
     1801 gagacgtcgc cgatgccctc gacgtgaccg acgatgttgc cgaagctgcg ccgcttcgtg
     1861 ccgagcatgc ccagacacca gcgcggtttg gtcgtgaggt tgatgaggtt ggcgagtgtc
     1921 ggcttcggcg gcgcggtgag gccgttcttc aggtccttgt ggcgctggcc gagaatctgc
     1981 aggtcgagcg tcagcatgag tgcgctgcag cgcgcggcct tggcgcggtc gatcaggcgt
     2041 tccatgaaac cgcggtcgcg cagcatgtac ggctgaaacc agaacggcgc cttcgtgtgc
     2101 gccgcgatgt cctcgatcga gcagatgctc atcatgctga gggtgaacgg aatgccgaat
     2161 ttctcggccg ccttcgccgc gaggatctcg ccgtcggcgt gctgcatgcc ggtgagcccg
     2221 gtcggcgcga tcgcgacggg catcgcggtg tcgatgccga ccatcttcgt gcgcagggtc
     2281 cggttctcca tgtcgaccgc gacgcgctgg cgcagcttga tgccctggaa gtcggcttcg
     2341 ttggcgcggt aggtgctctc ggtccacgag cccgcatcgg cgtactcgta gaacatgcgc
     2401 gggacacgct tctgtgcgat gcggcgcagg tcttcgatgt tggtgatgac tggcatggcc
     2461 tcccccggtc tgtgcgaacg acgcatgcta cgacagccgt ccggacggtc cggacgtgcc
     2521 gtttctcaat ctcggcgccg tgaagcaggc agagcgctgg cttgtctcag ccggagggag
     2581 gcgcggcatc gaagagcggc aggctgtcgc tcgcgtccgg ctcgcgcgcc acgagtcgcg
     2641 tcggcggctc ggctgaagct gctcgtgggg ccaacagttc ggccagcgtg gcgagcgcgc
     2701 cggcacgcac gccgagcagg cgcaggcgcc gcgacaggtc gacccgcttc aggcaggccc
     2761 tcgcggcgcg gcggatgtcg gcggcgtcca tcgtgtgcgc cggcagggtg aggtcgcgcg
     2821 tcaccgactt gaaatcgtcg aagcgcagct tgacgccgat ggtcttgctg gcgtagccct
     2881 tgcgcgacag gtcgccggcg agctgctcgc acagcagcgt gaagatggcg ctcagctcgg
     2941 cccggtcgcg cacggcgtgc aggtcgcggt cgaaggtggt ctcgcgactg atcgacttcg
     3001 gctcgctgaa ggtgaccacg ggacggtcgt cgcggccatg cgccgcgtcg tgcagccagg
     3061 cgccgaagct cttgccgaag tgctggacca gcagtgccgg gtccgccgcc gcgacgtcgc
     3121 cgatgctgtg gatgccgagc ccggcgagct tgagggtcgc cttcgggccg atgccgttga
     3181 ccttcttggc cggaagcggc cagatgcgcg ccgggatgtc cgcaagaccg agcagggtca
     3241 ggccatcggg cttgtcgagt tcggagcaga ttttcgagag cagcttgttc ggcgacacgc
     3301 cgaccgagca ggtgagaccg gtcgccgcga gcaccgcttc cttgagcctg aaggcggcgc
     3361 tgcgaccggc atcttcctgc gcacccggca catcggtgag gtcgatgtag atctcgtcga
     3421 tgccgcggtc ttcgacgagc ggcgcgatgc tgcgcaccgc ggccttgaac aggcgcgagt
     3481 acttgcggta t
//
LOCUS       DASVHM010000702         2438 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_122773, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000702 DASVHM010000000
VERSION     DASVHM010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122773"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2203
                     /locus_tag="VF308_12950"
     CDS             <1..2203
                     /locus_tag="VF308_12950"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEX7437611.1"
                     /translation="GYAHAQDRLWQLETHRRIGSGRLAEGFGAPALETDKFLRALGVK
                     RAAAAQWAKASPEARSAILAYTAGINSYLKGGMRARPVEFVLLGLEPEPWTPEDSLAW
                     AIMMAWDLGGNWSTELLRMRLALKMPVARIDELIPPYPGEKPLPTADYAALFRDLRLD
                     GKLGERALLAAPESGIEGVGSNNWVVHGSHTETGKPLLANDPHLKLSTPALWYFARLD
                     APGLKVAGATMPGLPFVVLGQNEHVAWGFTNTGPDVQDLYIERIKTDDPTRYQTPDGW
                     ATFESHDELLKVKGQPDVRFTVRSTRHGPVISDAGVAAGLTGPTEKPAYALAMRWTAL
                     DADSTTLEAGLGLARVHSVDEFIAASAKYQAPMQNMVVADVDGHIGVVSAGKVPLRKL
                     ANDLKGQVPSPGWDARYDWAGFLEPQLTPREVDPARGWIATANQRIHGPDYPHYLTNE
                     WAVPYRAQRIEQLLAARPKHDLESLRAIQGDQLSLAAVKLLPFIRKAQSSHPLAAAAR
                     AELASFDGTMMADRAAPLILWAWTRHLTEGIFADELGPAMWPASLGNRSFRDALEGVL
                     ERDDAWWCDDKTTAAVETCAQQIDAAFTKALDELQAAQGGDVAAWRWDRAHVARSEHR
                     PLSRVKLLARWFELRTPVGGDTYTVNVSRVGLRPDPTTQETYLDEHGPSLRALYDLAD
                     PARSRVMHSTGQSGNVFSPLYRDFVGPWTRVEYVPLWSAPVVSTLLLQPAR"
BASE COUNT          382 a          854 c          830 g          372 t
ORIGIN      
        1 cggctacgcc catgcgcagg atcgcttgtg gcaactcgag acccatcgcc gcatcggctc
       61 cggccgactc gcggagggct tcggcgcgcc ggcccttgag accgacaagt tcctgcgcgc
      121 gctcggcgtc aagcgcgccg cggcggcgca gtgggcgaag gcgagccccg aggcgcgcag
      181 cgcgatcctc gcctacacgg ccggcatcaa ttcctatctg aagggcggga tgcgagcgcg
      241 accggtcgaa ttcgtgctgc tcggcctcga gcccgaaccc tggaccccgg aagacagtct
      301 cgcctgggcc atcatgatgg cgtgggacct cggcgggaac tggtcgaccg agttgctcag
      361 gatgcggctc gcgctgaaga tgccggttgc gcgcatcgac gaactgatcc cgccctatcc
      421 cggcgaaaaa ccgttgccga cggccgacta cgccgcgctg ttccgcgatc tcaggctcga
      481 cggcaagctc ggcgagcgcg cgctcctcgc ggcgcccgaa tcgggcatcg agggcgtcgg
      541 ctcgaacaac tgggtcgtgc acggctcgca caccgagacc ggcaagccgc tgctggccaa
      601 cgatccgcac ctgaagctga gcacccccgc gctctggtat ttcgcgcggc tcgatgcgcc
      661 cggtctcaag gtggccggcg cgacgatgcc ggggctcccg ttcgtcgtgc tgggacaaaa
      721 cgagcacgtc gcctggggct tcacgaacac cgggcccgat gtccaggatc tctacatcga
      781 gcgcatcaag acggacgatc cgacgcgcta ccagaccccg gatggctggg cgacgttcga
      841 gagccacgac gaactcctca aggtcaaggg ccagcccgat gtccggttca cggtgcgctc
      901 gacccggcac ggcccggtca tctccgatgc cggcgtggcc gcgggcctga ccggcccgac
      961 cgagaagccc gcgtacgccc tggccatgcg ctggaccgcg ctcgacgccg actcgaccac
     1021 gctcgaggcc ggcctggggc tcgcgcgcgt gcactcggtc gacgagttca tcgccgcgtc
     1081 ggcgaagtac caggcgccga tgcagaacat ggtggtcgcg gacgtcgatg gccacatcgg
     1141 cgtggtcagc gcgggcaagg tgccgctgcg caagctcgcc aacgacttga agggccaggt
     1201 cccgtcaccc ggctgggacg cccgctacga ctgggccggc tttctcgaac cgcagctcac
     1261 gccgcgcgag gtcgaccccg cgcgcggctg gatcgcgacg gcgaaccagc gcatccatgg
     1321 gcccgactat ccgcactacc tgacgaatga atgggcggtg ccgtatcggg cgcagcgcat
     1381 cgagcaattg ctcgcggctc gccccaaaca tgacctcgag agcctgcgcg cgatccaggg
     1441 cgaccagctt tcgctcgcag ccgtgaagct gctcccgttc atccgcaagg cgcagtcgtc
     1501 gcatccgctc gccgccgcgg cccgggccga gctcgcttcg ttcgacggca cgatgatggc
     1561 ggaccgggcg gcgccgctca tcctctgggc ctggacccgg cacctgaccg aaggcatctt
     1621 cgccgatgaa ctcggcccgg cgatgtggcc ggcaagtctt gggaatcgct cctttcgcga
     1681 cgcgctcgag ggcgtgctcg agcgcgacga cgcctggtgg tgcgacgaca agacaaccgc
     1741 agcggtcgag acctgcgcgc agcagatcga tgccgcgttc acgaaggcgc tcgacgagct
     1801 gcaggccgcg cagggcggag atgtcgcggc ctggcgctgg gaccgggctc acgtggcgcg
     1861 ctccgaacat cgtccgctca gccgcgtcaa gctgctggcg aggtggttcg aactgcgcac
     1921 gccggtcggc ggcgatacgt acaccgtcaa cgtgtcccgg gtcgggctgc gccccgaccc
     1981 gacgacgcag gagacttatc tcgacgaaca cgggccgagc ctgcgggcgc tctacgacct
     2041 ggccgatccg gcgcgctcgc gcgtgatgca ttcgaccggc cagtcaggca acgtgttttc
     2101 gccgctctat cgcgatttcg tggggccatg gacgcgcgtc gaatacgtgc cgctgtggag
     2161 cgcgccggtg gtctcgactc tgctgctgca gccggcgcgc tgagcccgcc tgcgcatgcc
     2221 gcgcgcctgc gccgggcgta cgcggtattt cggagcggac ccgcaagcac attcgtaacg
     2281 ctttcataac gcggcatgac ctaaagccct ctggccatcg gtcatggcgt ggaggaggct
     2341 ggtcatgatt cctataacga gagccttgag cgcgtcttct gcgcgcttct ggtttgcgcg
     2401 atgctggcgc tggtatcggc ctgcggcggc ggcaacgc
//
LOCUS       DASVHM010000703         2580 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_700588, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000703 DASVHM010000000
VERSION     DASVHM010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_700588"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(115..456)
                     /locus_tag="VF308_12955"
     CDS             complement(115..456)
                     /locus_tag="VF308_12955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437612.1"
                     /translation="MVKQTASDADRAREDCGARRSSSASNDHWKRLLRRPSPQPVTLD
                     AQALVDELNRRLRADPAWRDDTRFVVASGDGSVAAPTWQGPDSMKPVVARIVKSVIGE
                     FEAEQPFLFDR"
     gene            complement(520..765)
                     /locus_tag="VF308_12960"
     CDS             complement(520..765)
                     /locus_tag="VF308_12960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437613.1"
                     /translation="MIEKSDTPTSLLQDRPSHRFEARSVTGARYTLVEEADLGGTNGR
                     VHRRYRTAYAGLPVVANDDGSFTLVDTHTRLVRVDSR"
     gene            838..1839
                     /locus_tag="VF308_12965"
     CDS             838..1839
                     /locus_tag="VF308_12965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014194242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEX7437614.1"
                     /translation="MSNATSLAIAVHRADQPGEPGEPGAEGEHQIRVGTASWTDKTLI
                     ACGRFYPKGATKAEARLRFYAAQFPIVEVDSSYYAMPTPATAQLWAERTPPGFVMNVK
                     AFRLFTGHQTAARVLHADLRPALGSLADAASFFYGDVPAELRSELWLRFRDALLPLRA
                     AGKLGLVHFQFPPWVVCDAAGRAQVAHCAERMAGFDLSAEFRHQTWFGARDQASTLAF
                     LRELALAHTVVDGPQGFANSVPAVWEATHPRYALVRLHGRNARTWNIRGATSASDRFN
                     YDYPETELGELAPRIERLALTALQTHVIFNNNMEDQGQRNARSLIGLLAGRGRRPAG"
     gene            2128..>2580
                     /gene="lysM"
                     /locus_tag="VF308_12970"
     CDS             2128..>2580
                     /gene="lysM"
                     /locus_tag="VF308_12970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013517534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
                     /protein_id="HEX7437615.1"
                     /translation="MSLISFIQEAGEKLFNHPKAAPAAGTPDVAALNDTAGQAIEKYI
                     AAQGLKADGLDVKYDGASQTVTVSGVAPDQATKEKIVLCCGNVAAVAKVNDMLTVADG
                     GGQESTYREVKSGDTLSKIAKEAYGDANAYMKIFEANKPMLSNPDKIYP"
BASE COUNT          419 a          910 c          875 g          376 t
ORIGIN      
        1 acgccaacgg tcctctacgg ccagggcgtg aagtcgtcgt accagggcca gggcatcaag
       61 ctcagcaagc acttcaaggc cgtgccctga ggggcgcggc gccccgcgcg cggcttagcg
      121 gtcgaacagg aacggctgct cggcctcgaa ctcgccgatc acgctcttga cgatccgcgc
      181 cacgaccggc ttcatcgagt ccggcccttg ccacgtcggc gcggcgacgc tgccgtcgcc
      241 gctggcgacg acgaagcggg tgtcgtcgcg ccaggccggg tcggcgcgca agcgccggtt
      301 cagctcgtcg acgagcgcct gcgcgtcgag cgtgaccggc tggggcgaag gccgccgcag
      361 caagcgcttc cagtggtcgt tgctcgcgct cgacgatcgt cgagcgccgc agtcttcacg
      421 cgcccgatcg gcgtcgcttg ctgtttgctt gaccacgggt acggcgcatg ggagaacccc
      481 cgagtggcaa gccttgtgcc gccgcagcaa tcgaggccgt cagcgcgagt cgacccggac
      541 cagccgagta tgcgtgtcga cgagggtgaa cgagccgtcg tcgttggcga ccaccggcaa
      601 accggcgtag gcggtgcggt agcggcgatg gacgcggccg ttggttccgc cgagatcggc
      661 ttcctcgacg agggtgtagc gggcccccgt gacggagcgg gcctcgaatc ggtgcgaggg
      721 tcggtcctgc agtaggctcg tgggggtgtc ggatttttcg atcatggtgc gagacggggt
      781 gcgcgtggcc gccggcgcgg gcagcgcgcg gcagaccgac ggggcgcgaa ggggcgcatg
      841 agcaacgcta cgtcgttggc aattgccgtg caccgcgccg atcagccggg cgagcccggc
      901 gagccgggcg ccgaaggcga gcatcagatc cgagtcggca cggcgtcgtg gaccgacaag
      961 accctgatcg cctgcggccg cttctacccg aagggagcga ccaaggccga ggcgcggctg
     1021 cgtttctatg ccgcccagtt cccgatcgtc gaggtcgact cgagctatta cgcgatgccg
     1081 acgccggcga ccgcgcagct ctgggccgag cgcaccccgc ctggtttcgt catgaacgtg
     1141 aaggcgttcc gcctcttcac cggccaccag accgccgcca gggtcctgca cgccgacctg
     1201 cgccccgcgc tcggttcgct ggccgacgcg gcgagcttct tctacggtga cgtcccggcc
     1261 gagctgcgca gcgagctctg gctgcgcttt cgcgacgcgc tcctgccgct tcgcgccgcc
     1321 ggcaagctcg gcctggtcca cttccagttc ccgccctggg tcgtgtgcga tgccgccggc
     1381 cgcgcccagg tcgcacactg cgccgagcga atggccggct tcgacctctc ggccgagttc
     1441 cgccaccaga cctggttcgg cgcgcgcgac caggcatcga cgctggcgtt cctgcgcgag
     1501 ctggcgctcg cccacacggt cgtcgacggg ccgcagggct tcgccaactc ggtgcccgcc
     1561 gtgtgggaag cgacccaccc gcgctacgcg ctcgtccgcc tgcacggccg caacgctcgc
     1621 acctggaaca tccggggcgc gacgtcggcc tcggaccgct tcaactacga ctaccccgag
     1681 accgagctcg gcgagctggc gccgcgcatc gaacgcctcg cgctgacggc gctgcagacc
     1741 cacgtgatct tcaacaacaa catggaagat caagggcagc gcaacgcgcg ctcgctcatc
     1801 gggctgctcg ccggacgcgg tcgacgcccg gccgggtgac cgcgcgatgg gcacgggccc
     1861 ctggggggga ggcgatggct cgcgagcccg tcgccaacgc ccctcggcag cgtaggacac
     1921 cggcgtcttc gcttgtccac tcccttcacg gcgccggcgc gttttcctaa ggttcgtgtt
     1981 ccgcccttca gaggaagccg atgcgctgct ccaagatgcc aaggtcagcg tgctcggcga
     2041 gtacattgac cacccgatga gcgagatgag cgaaggtctc gaagtcgtcg gctgaatttc
     2101 cccttaccca ccccagaaag caacaccatg agcctcatca gtttcatcca ggaagccggc
     2161 gaaaagctgt tcaaccatcc caaggccgcg cccgcggccg ggacgcccga cgtcgccgcc
     2221 ctgaacgaca ccgccggcca ggcgatcgag aaatacatcg ccgcgcaggg cctgaaagcc
     2281 gacggcctcg acgtcaagta cgacggcgcc tcgcagacgg tcaccgtcag cggcgtcgcg
     2341 cccgaccagg cgaccaagga gaagatcgtc ctctgctgcg gcaacgtcgc cgcggtggcg
     2401 aaggtcaacg acatgctgac cgtcgccgac ggcggcggcc aggaatcgac gtaccgcgag
     2461 gtcaagtcgg gcgacacgct gtcgaagatc gccaaggaag cgtatggcga cgccaacgcg
     2521 tacatgaaga tcttcgaggc gaacaagccg atgttgtcca atcccgacaa gatctacccg
//
LOCUS       DASVHM010000704         2146 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1277504, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000704 DASVHM010000000
VERSION     DASVHM010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1277504"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..633)
                     /locus_tag="VF308_12975"
                     /pseudo
     CDS             complement(1..633)
                     /locus_tag="VF308_12975"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
     gene            complement(630..>2146)
                     /locus_tag="VF308_12980"
     CDS             complement(630..>2146)
                     /locus_tag="VF308_12980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015064687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX7437616.1"
                     /translation="NTNCREHHYDITLYADRRGKLLAIDCDATVDSGAYSSYPFSACL
                     EAAQVGSILPGPYKMDAYACRTWSVATNKPPILPYRGVARTGVCFALEILLDAVAREA
                     GLEPHEVRLANLVQPGEMPYDNVTNKHFDSGDYPQALRRALDGLDWKRWRARQQQGET
                     DGRLIGIGHAMYCEQGAHGTSVYAGWGIPMVPGHEQCGARLTPDGVLELRIGAHSHGQ
                     GLETTLAQVAHSVLGVDLQQVRLVHGDTAISPYSTGTWGSRCAVMAGGAVSTACKALA
                     ERLLNIGSALLETPSAALHLEDGAVVDLSGQRRLTFAQIAHAWYREPQRMPKDVNPAG
                     LEVMVGYKALRDTGTFSYACHACAVGIDPELGTVEILDYVICEDGGTLLNPMVVDGQI
                     LGGLAQGIGTALYEEMPYDSEGQPLASTLADYLLPGATEVPMARLDHLETPSPYTEFG
                     QKGIGEGGAIAPPAAIVNAINDALAKLGVEMMACPASPRRVREALRRAGIGAVA"
BASE COUNT          342 a          725 c          748 g          331 t
ORIGIN      
        1 caacgcgcgc gcgatgccgc gtgcagggtc ggtccaggcg gcggcgatcg cgtcggcgaa
       61 ctcgcccggc ttgcggcagg tcttgcgata ggcccagcgc gcaccgctcg aaaagcgcgg
      121 cacctcgacc gcgacgatca cttcgtcggg tgcgagcacc gtggtgaagg ggccgaggaa
      181 gaaatcgctc gcagtcacgc tgcgctcacc ggccggcccg acgacgacga cggccgcatc
      241 gagcaggcgc atcgtgttga cccaatcggc cgccggatcg gcatgagcca aactgcctcc
      301 gatcgttccg cggttgcgaa cagcgcggta cgcgatgccc gcggccactg tgggcagcag
      361 gccaaaggtg aagtcgggca gttcgccgtc ctcgatgcgt gcatgggtga cggcggcgcc
      421 gatgcgcagg ccgtcttacg tggccgaaaa gccagtcagc gcttcgatgc ggctgaggtc
      481 aacgagagac tcgacctgca ccaggcgcag gttcagcatc ggccccagcg actgactgcc
      541 gccgcaggct ttggccaggt cggattcgcc gagcagggcc acggcctggg cggtgctgtt
      601 cgcaagccgg tactcgaagg cagccgcctt catgccacag ccccgattcc cgcacgccgc
      661 agcgcctcgc gcacgcgacg tggcgaggcg gggcacgcca tcatctcgac gcccaacttg
      721 gcgagcgcgt cgttgatcgc gttgacgatc gccgccggcg gcgcgatcgc accgccttcg
      781 ccgatgccct tctgcccgaa ctcggtgtag ggcgaaggcg tctcgagatg gtcgaggcgc
      841 gccatcggca cttcggtcgc gccggggaga aggtagtcgg cgagcgtcga ggccagtggc
      901 tggccctcgc tgtcgtaggg catctcttcg tagagcgcgg tgccgatgcc ttgcgccagg
      961 ccgccgagga tctggccgtc gaccaccatg gggttaagca gggtgccccc gtcctcgcag
     1021 atcacgtaat cgagaatctc gacggtgccg agctcgggat cgatgcccac cgcgcacgca
     1081 tggcacgcgt agctgaaggt cccggtgtcg cgcagcgcct tgtagccgac catgacttcc
     1141 agtcccgcag ggttcacgtc cttgggcatg cgctgaggct cgcggtacca ggcgtgggcg
     1201 atctgcgcga acgtgaggcg gcgctggccc gacaggtcga ccaccgcacc gtcctccagg
     1261 tggagggccg cactgggcgt ctcgagcagc gccgagccga tgttcagcaa gcgctccgcg
     1321 agcgccttgc aagcggtcga gaccgcaccg ccggccatca ccgcgcaacg cgagccccag
     1381 gtgccggtgg agtagggcga gatcgccgtg tccccgtgca cgaggcgcac ctgctgcaag
     1441 tcgacaccga gcacgctgtg ggcgacctga gcgagcgtcg tctccagtcc ctgcccgtgc
     1501 gaatgcgcgc cgatgcgcag ctcgagcacg ccgtcgggcg tgaggcgtgc accgcactgt
     1561 tcatgacccg gaaccatcgg gatgccccag ccggcataga ccgacgtgcc atgggcgcct
     1621 tgctcgcagt acatcgcgtg accgatgccg atgagtcgtc cgtcggtctc tccttgctgc
     1681 tggcgtgcgc gccagcgctt ccagtcgagc ccgtccaggg cgcgtcgcag cgcctgcggg
     1741 tagtcgccgg agtcaaagtg cttgttcgtg acgttgtcgt acggcatctc gccgggctgg
     1801 accaaattgg ccagtcgcac ctcgtgcggc tccagaccgg cctcgcgcgc aaccgcgtcg
     1861 agcaggattt cgagcgcgaa acacacgccc gtgcgcgcga ccccgcggta gggcaggatc
     1921 ggcggcttgt tggtcgcgac agaccaggtg cggcacgcgt acgcatccat cttgtacgga
     1981 cccggcagga tggagccgac ctgggccgct tcgaggcagg ccgagaacgg ataggacgaa
     2041 tacgcgccgg aatcgactgt cgcatcgcaa tcgatcgcca gcagcttgcc gcggcggtcg
     2101 gcgtacagcg tgatgtcgta gtggtgctcg cggcagttcg tgttcg
//
LOCUS       DASVHM010000705         2665 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_990671, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000705 DASVHM010000000
VERSION     DASVHM010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2665
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_990671"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..738
                     /locus_tag="VF308_12985"
     CDS             <1..738
                     /locus_tag="VF308_12985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7437617.1"
                     /translation="GALALLNLLYGYFVLPESLPPALRRRFEWRAANPVTSLRALSQT
                     HGIGLLVAVIACSGLAQFVLYTTWVLYTTFKFGWGPLQNGWSLFAVGVASALTQGLLL
                     GRLLKRYSPQRLAIWGLVSATASYMLYGLATEGWMMIVVIFANVLGFTVAASIQSIIS
                     SATDARTQGQTMGAVSSLNSLMAVVAPVIGAPLLGMVSHLPHGDWRIGAPFYFCAAAQ
                     FLALILAWLHFRSLRRDRLAARVSAAP"
     gene            744..2327
                     /gene="guaA"
                     /locus_tag="VF308_12990"
     CDS             744..2327
                     /gene="guaA"
                     /locus_tag="VF308_12990"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006402676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEX7437618.1"
                     /translation="MHDKILILDFGSQVTQLIARRVREAHVFCEIHPNDVSDDFIRDF
                     APKAIILSGSHASTYEAQDLRAPEMIWQLGVPVLGICYGMFTMAVQLGGEVEPSTHRE
                     FGYAEVRARGHTRLLQGIEDFSTAEGHGMLKVWMSHGDKVTVLPPGFTLMASTPSCPV
                     AGMADEGRGYYAVQFHPEVTHTSKGRDLLNRFMLDIAGAKPDWVMGNYVEEAVARIRE
                     QVGDEEVILGLSGGVDSSVAAALIHRAIGDRLTCVFVDHGLLRLDEGRTVMEMFAGRL
                     HARVIAVDAGAQFLGKLAGVADPEAKRKIIGREFVEVFQAEAAKLRGAKWLAQGTIYP
                     DVIESGGAKTRKATTIKSHHNVGGLPETLGLKLLEPLRELFKDEVRELGIALGLPHDM
                     VYRHPFPGPGLGVRILGAVTSEYADLLRRADAIFIEELRNATDGPSGKTWYELTSQAF
                     VVFLPVRSVGVMGDGRTYEHVVALRAVQTSDFMTADWAELPYSLLKRVSSRIINEVRG
                     INRVTYDVSSKPPATIEWE"
     gene            2456..>2665
                     /locus_tag="VF308_12995"
     CDS             2456..>2665
                     /locus_tag="VF308_12995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018420699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX7437619.1"
                     /translation="MAATQTVLQRVDAAAQGELYVSFELGDKKWKVTAGDGRVGPSQY
                     GVDAGDKEAVLNCLRKAKERYKLGPQ"
BASE COUNT          441 a          868 c          902 g          454 t
ORIGIN      
        1 ggcgcactgg cgctcctcaa cctgctgtac ggctatttcg tccttcccga gtcgctgccg
       61 cctgcgctgc ggcgccgctt cgaatggcgg gccgcgaacc cggtcacctc gctgcgcgcg
      121 ctttcccaga cccatggcat cggcctgctc gtcgcagtga tcgcctgcag cgggcttgcc
      181 cagttcgtcc tgtacacgac ctgggtcctg tacacgacct tcaaattcgg ctgggggccg
      241 ctgcaaaacg gctggtcgct gttcgcggtc ggggtcgcct cggcgctcac ccagggactt
      301 ttgctcggcc gcctgctgaa gcgctactcg ccgcagcgcc tggcgatctg gggcctggtt
      361 tcggcgaccg cgtcgtacat gctctacggc ctcgcgaccg agggctggat gatgatcgtg
      421 gtgatcttcg ccaacgtgct cggcttcacc gtcgcggctt cgatccagag catcatctcg
      481 agcgcgaccg atgcgcgcac gcagggccag acgatgggcg cggtcagttc gctgaacagc
      541 ctgatggccg tcgtcgcgcc ggtgatcggg gcgcccctgc tcggcatggt ttcgcacctg
      601 ccccacggcg actggcgcat cggcgcgccg ttctatttct gcgcggccgc gcagtttctc
      661 gcgctgatcc tggcgtggct gcatttccgc agcctgcgcc gggaccggct cgccgcgcgc
      721 gtctccgccg caccctgaca accatgcacg acaagatcct gatcctcgac ttcggctccc
      781 aggtgacgca gctgattgcc cggcgcgtgc gcgaagcgca tgtgttctgc gagatccatc
      841 cgaacgacgt cagcgacgat ttcatacgcg acttcgcgcc gaaggcgatc atcctctcgg
      901 gcagccacgc ctcgacctac gaggcgcagg acctgcgcgc gcccgagatg atctggcaac
      961 tcggcgtgcc ggtgctgggc atctgctacg gcatgttcac gatggccgtg cagctgggcg
     1021 gtgaggtcga gccgagcacg caccgcgagt tcggctatgc cgaggtgcgc gcgcgcggcc
     1081 acacgcggct cctgcagggc atcgaagact tctccaccgc cgaaggccac ggcatgctga
     1141 aggtctggat gagccacggc gacaaggtca ccgtgttgcc gcccggtttc acgctgatgg
     1201 cctcgacgcc gagctgcccg gtcgccggca tggccgatga ggggcgcggt tactacgcgg
     1261 tgcagttcca cccggaggtc acgcacacca gcaaggggcg cgacctgctg aaccgtttca
     1321 tgctcgacat cgccggcgcg aagcccgact gggtcatggg caactacgtc gaagaggccg
     1381 tggcgcgcat ccgcgagcag gtcggcgacg aagaggtgat cctcggcctt tccggcggcg
     1441 tcgattcgag cgtcgccgcg gcgctgatcc atcgtgcgat cggcgatcgc ctcacctgcg
     1501 tgttcgtcga ccacggtctg ttgcggctcg acgaggggcg tacggtgatg gagatgttcg
     1561 cggggcgcct gcacgcccgg gtgatcgcgg ttgatgcggg cgcgcagttt ctcggcaagc
     1621 tcgccggtgt cgccgatccg gaagccaagc gcaagatcat cggccgcgaa ttcgtcgagg
     1681 tgttccaggc cgaagccgca aagctgcgcg gtgcgaagtg gcttgcgcag ggcacgatct
     1741 acccggacgt gatcgaaagc ggtggcgcga agaccagaaa ggcgacgacg atcaagagcc
     1801 accacaacgt cggcggcctg cccgagacgc tcggcctgaa gctgctcgaa ccgctgcgcg
     1861 agcttttcaa ggacgaggtg cgcgaactcg gcatcgccct cggcctgccg cacgacatgg
     1921 tctaccggca tccgttcccg ggcccgggac tcggcgtgcg catcctcggg gcggtgacga
     1981 gcgaatacgc ggatctgctg cggcgcgccg acgcgatctt catcgaggaa ttgcgcaacg
     2041 cgaccgacgg cccgagcggc aagacctggt acgagctgac gagccaggcg ttcgtggtct
     2101 ttctgccggt caggagcgtc ggcgtgatgg gcgacggccg gacctacgaa cacgtcgtcg
     2161 cgctgcgcgc cgtccagacc agcgatttca tgacggccga ctgggccgaa ctgccctaca
     2221 gtctcttgaa gcgcgtctcc agccggatca tcaacgaagt ccgcggcatc aaccgggtca
     2281 cctacgacgt gtcgtcgaag ccgccggcga cgatcgagtg ggagtaggtt tcgagatcta
     2341 tcggggtcta tcgcgatcta tcgaaaagaa actatgtagg actggcccga gcggcgcgag
     2401 acgagtcgcg ctacaaggga agcttcccaa cttcgtttgg tcaaggagaa cggaaatggc
     2461 tgcgacccag acagtcctgc aacgcgtgga tgcggcagcc caaggtgagc tgtacgtgag
     2521 cttcgagctc ggcgacaaga agtggaaggt gacggcgggc gacggccgcg tcggaccgag
     2581 ccagtacggt gtggacgccg gggacaaaga ggcggtgctg aactgcttgc gcaaggccaa
     2641 ggagcgctac aagcttgggc ctcag
//
LOCUS       DASVHM010000706         5350 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_482666, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000706 DASVHM010000000
VERSION     DASVHM010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5350
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482666"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..355
                     /locus_tag="VF308_13000"
     CDS             <1..355
                     /locus_tag="VF308_13000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437620.1"
                     /translation="PCGGAAPQPPCVTRITTSDPGRLLLTGYPAPGGPGDIQHMDIPS
                     LRGLSRTAPYFSNNTAATLEEMLDHYTQFFKRVQVQNPAAPLLTTKPGVTPPVIDRPF
                     TQSEIPALLAYLRKI"
     gene            complement(428..2452)
                     /locus_tag="VF308_13005"
     CDS             complement(428..2452)
                     /locus_tag="VF308_13005"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEX7437621.1"
                     /translation="MSQASRTADEPGALRQSERNFRLLVESVKDYAIFMLDPTGHVLT
                     WNAGAQRFKGYAADEIIGQHFSRFYPPDALKAGLPAHELEVAEATGTFEDEGWRVRKD
                     GTLFWANVVITVLRDSSGELVGFAKVTRDLTQRRDHEESLRQSEERFRLLVEGVSDYA
                     IFMLDVNGIVATWNAGAQRIKGYDANEIIGRHFSTFYPADVRQSGWPDHELQVATEKG
                     SFVDEGWRVRKDGTTFWASVTITALRDSQGRLLGFAKLTRDLTDQKRAEALEIADQRR
                     EEILEAERNARIEAQRAIRIKDEFLATLSHELRTPLSSILGWTQILKRKADSLNPEEL
                     ERGLDVIDRNARAQVRLIEDLLDLSRIMAGKVRLDLQQASMLDIVQSAIESAEPGARA
                     KDIRLGAILDPNPPPVSADGGRLQQVVWNLLSNAIKFTPKGGQIQVVLQRVNSSIELS
                     VSDTGIGIPESFLPHVFDRFSQKDASTTRSFGGLGLGLAISKQLVELHGGTIRASSRG
                     EGLGATFFVQLPLSIMQLQADAPARTHPTQEAAPTEDPTLPRLAGIRILIVDDEADGR
                     ELLRRVLEDQSATVTALSSAEEALNELKKVRPHLIVSDVGMPLIDGYQFMRTLRAGEA
                     KGERVPALALTAFARAEDRKRALLAGYQAHLAKPFDVAELVLVAADLAGR"
     gene            2542..3333
                     /locus_tag="VF308_13010"
     CDS             2542..3333
                     /locus_tag="VF308_13010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HEX7437622.1"
                     /translation="MIVERIWTGNAYRNYNYLIACPESGEALAIDPLDHEKCLNAARV
                     KGWQITQVLNTHEHHDHTGGNAAVVAATGAKVIAHHRAGSRIAGVDRGVKAGDVIKVG
                     KTVELECMDTPGHTMCHICLRSHTEQPALFSGDTLFNAGAGNCHNGGNPEDLYATFVD
                     QLAKLPAGTLVYPGHDYIENNLRFTLAREPDNAAAKALLPEVSGQDPATARVTTLDEE
                     KRINTFLRLSSPSVIAALREEFPDLPEQPDPRTVFVKLRELRNRW"
     gene            complement(3415..>5350)
                     /locus_tag="VF308_13015"
     CDS             complement(3415..>5350)
                     /locus_tag="VF308_13015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437623.1"
                     /translation="AESALAAQREREATTRRALVRARQIAGVCILLAVGAAVAAAFGI
                     YGMHQAQKTRAFAEAARGESERLIVYLLDDFYRELEPVGRLEIVGELARRSLAYYDGL
                     PAGLRGDETRRNQALAQARYGAVLRNQGRAEEARKVLAPSIATLDALRAQGDMSEPTT
                     IGLAMALSAQARLMSDGQRTEALVPARRAIDVLKEAAAAPDASPAVRRAQAAALTQLG
                     FLQQRTDRNAEALVTLRAAVEAYRGVDGLRTDNDAAANFVITSAWLMDALSAAGRSED
                     ALRVGEEARKVATTVLDRQPTHMIALRGRALVASNNTTAYGGLLQQARRLESSDAAAA
                     DWQTLSRVDPSNVITISNLGVSRINGGGALWDLGRPREAAEKFLQNAELEAAVAAKAP
                     IAQGNLGFQTFLAASANAERGELATAERQWAESVRVLDGWVQSFAANSYERRFWSRTS
                     PVIQVEYALARGDLAGARHSAKGAREALLQVDPGAEPGRRQNWASMLRRLHAGMVRVE
                     VEANDLAAAERHVQWLAAARRDLEAVNLETRREQANDQAMSALVLARLGRVDEARPMA
                     AKALAFERELHALGTDDQMHKVDLALALVASASADPAEAKALLGEARSVLDTLPAEAR
                     ALRIGRWTEGLISEAGRGGR"
BASE COUNT          763 a         1936 c         1837 g          814 t
ORIGIN      
        1 gccgtgcggc ggtgccgcgc cgcagccgcc ctgcgtcacc cggatcacga cctcggaccc
       61 cggacgcctg ctgctcaccg gttatcccgc gcccggcggc cccggcgaca tccagcacat
      121 ggacatcccg agcctgcgcg ggctgagccg gacggcgccc tatttctcca acaacaccgc
      181 ggcgacgctc gaggagatgc tcgaccacta cacccagttc ttcaagcggg tccaggtgca
      241 gaaccccgcc gcgccgctgc tgacgacgaa gccgggcgtc accccgccgg tcatcgatcg
      301 acctttcacg cagagcgaga tcccggcgtt gctcgcgtac ctccgcaaga tctgaggaag
      361 gtctgcgctt caggccgaaa cctacttcga ctcgtcggcg cgaggaagga gatgcattcg
      421 acccggctca ccggccggcg agatcggccg cgaccagcac gagctccgcc acgtcgaacg
      481 gcttcgccag gtgtgcctgg tacccggcca ggagagcgcg cttgcggtct tccgcgcggg
      541 cgaacgcggt gagggcgagc gccgggaccc tctcgccctt ggcttcgccg gcacgcagcg
      601 tccgcatgaa ctggtagccg tcaatgaggg gcatgccgac gtcgctgacg atgagatgcg
      661 gcctgacctt cttcaattcg ttgagcgcct cctcggccga tgacagggcg gtgacggtgg
      721 ccgactgatc ctcgagcacc cgtcgcagca gctcgcgccc gtcggcctcg tcgtcgacga
      781 tgaggatgcg gatgccggca agcctgggca gggtcgggtc ttccgtgggc gctgcctcct
      841 gggtcgggtg ggttcgcgcc ggggcgtcgg cttgcagttg catgatggag agcggcagct
      901 gcacgaagaa cgtcgcgccc agtccctcgc ccctgctgct cgctcgtatc gtgccgccgt
      961 gcagctcgac gagctgcttc gagatcgcga ggcccaggcc gaggccgccg aagctgcgcg
     1021 tcgtcgacgc gtccttctgc gagaaccggt cgaacacgtg gggaagaaag ctctccggga
     1081 tgccgatgcc ggtgtcgctg acgctcagct cgatgctcga attcacccgc tgcagcacga
     1141 cctggatctg gccgcccttg ggcgtgaact tgatcgcatt gctgagcagg ttccagacga
     1201 cctgctgcag tcggccgccg tcggccgaca ccggcggcgg attcggatcc aggatggccc
     1261 cgaggcggat gtccttggcc ctggcgccgg gctcggccga ctcgatcgcg ctctgcacaa
     1321 tgtcgagcat cgatgcctgc tgcaggtcga gccggacctt gccggccatg atccggctca
     1381 ggtcgagcag gtcttcgatc agccgcacct gcgcgcgcgc gttgcgatcg atcacgtcga
     1441 ggccgcgttc gagctcctcg ggattcaggg aatcggcctt gcgcttgagg atctgcgtcc
     1501 agcccaggat cgagctgagc ggtgtcctca attcgtgcga gagcgtggcg agaaactcgt
     1561 ccttgatgcg gatggcgcgc tgggcctcga tccgggcgtt tcgctcggct tcgagaatct
     1621 cttcgcgccg ctggtcggcg atctcgagcg cctcggcgcg cttctggtcg gtcaggtcgc
     1681 gcgtcagctt ggcgaacccg agcagccggc cctgcgagtc gcgcagtgcg gtgatggtga
     1741 cgctggccca aaacgtcgtg ccgtccttgc ggacacgcca gccctcgtcg acgaagctgc
     1801 ctttctcggt ggcgacctgc agctcgtgat ccggccatcc gctctgccgg acgtccgccg
     1861 gatagaacgt cgagaaatgc cggccgatga tctcgttcgc gtcgtagccc ttgatccgct
     1921 gggcgccggc gttccacgtg gcgacaatgc cgttgacgtc gagcatgaag atcgcgtagt
     1981 cggagacccc ctcgaccagc agccggaagc gctcctcgct ctgccgcagg gactcttcgt
     2041 ggtcgcgccg ctgcgtcaga tcgcgcgtga ccttggcgaa ccccaccagt tctccggagc
     2101 tgtcgcgcag caccgtgatg acgacgttcg cccagaacag cgtgccgtcc ttgcggacgc
     2161 gccagccctc gtcttcgaag gtcccggtgg cctccgcgac ctcgagctcg tgcgcgggga
     2221 gccccgcctt caacgcgtcg ggcggataga agcgcgagaa atgctggccg atgatctcgt
     2281 cggccgcata gcccttgaag cgctgcgccc cggcattcca cgtcaggacg tggcccgtcg
     2341 gatcgagcat gaagatcgca tagtccttga cgctctcgac gagcagacga aagttccgtt
     2401 cgctctggcg cagcgcgccg ggttcgtcgg cggttcggga ggcctggctc atggaggcga
     2461 acgtatcaca gggtcccggc cgacgcgtcc ggccggtggc atcatcgccc gaggccggtc
     2521 ccgcggcctg gagcgcaccc catgatcgtc gagcgaatct ggaccggcaa cgcctaccgc
     2581 aactacaact acctgatcgc ctgccccgag agcggcgagg cgctcgcgat cgatccgctc
     2641 gaccacgaga agtgcctgaa cgcggcccgg gtcaagggct ggcagatcac gcaggtcctc
     2701 aacacgcacg agcaccacga ccataccggc ggcaatgcgg cggtggtcgc ggcgaccggt
     2761 gcgaaggtga tcgcgcacca ccgggcgggg tcgcgcatcg ccggcgtcga ccgcggcgtc
     2821 aaggcgggcg acgtgatcaa ggtcggcaag accgtcgagc tcgaatgcat ggacacgccc
     2881 ggccacacga tgtgccacat ctgcctgcgc tcgcacaccg agcagccggc gctgttctcg
     2941 ggcgacacgc tcttcaacgc gggcgccggc aactgccaca acggcggcaa cccggaagac
     3001 ctgtacgcga ccttcgtcga ccagctcgcg aagctgcccg ccgggacgct ggtctacccg
     3061 ggccacgact acatcgagaa caaccttcgc ttcactctcg cgcgcgagcc cgacaacgcc
     3121 gccgcgaagg cgctgcttcc cgaggtgagc gggcaggacc cggcgacggc gcgcgtcacg
     3181 acgctggacg aggagaagcg gatcaacacc ttcctgcgcc tgtcgagccc gagcgtcatc
     3241 gcggccttgc gcgaggaatt ccccgatctg cccgagcagc ccgaccccag gacggtgttc
     3301 gtcaagctca gggagctgcg caacaggtgg tagctcgcgc gggcgccggt gcctcccggc
     3361 gcggcgatcc ggtggtcggc cgcgcgatcc gggcttttca cggaaccggc gcgatcagcg
     3421 cccgccgcga cccgcctcgc tgatcagccc ttcggtccag cggccgatgc gcagcgcgcg
     3481 cgcctccgcg ggcagggtgt cgagcaccga ccgggcctcg cccagcagcg ccttcgcctc
     3541 ggccggatcg gccgacgccg acgcgaccag cgccagcgcc aggtcgacct tgtgcatctg
     3601 gtcgtcggtg ccgagcgcgt gcagctcgcg ctcgaaggcc agcgccttcg cggccatcgg
     3661 gcgcgcctcg tcgacgcggc cgagacgcgc caggaccagg gccgacatcg cctggtcgtt
     3721 cgcctgctcg cgccgcgttt cgaggttgac cgcctccagg tcgcgccgcg ccgccgcgag
     3781 ccattgcacg tgtcgctcgg cggcggcgag atcgttggcc tcgacctcga cgcgcaccat
     3841 gcccgcatgc agtcggcgca gcatggaggc ccagttctgg cgtcggcccg gttcggcacc
     3901 cggatcgacc tgcaggagcg cctcgcgcgc gcccttggcg ctgtggcgtg cccccgccag
     3961 gtcgccgcgg gcgagggcgt attccacctg gatgacaggg gaggtccgcg accagaagcg
     4021 gcgctcgtac gagttcgcgg cgaacgactg gacccatccg tcgaggaccc gcaccgactc
     4081 tgcccactgc ctctctgccg ttgcgagctc gcccctttcg gcgttggcgc tggccgcgag
     4141 aaacgtctgg aagccgaggt tgccttgcgc gatcggcgcc ttcgccgcga ccgcggcctc
     4201 cagctcggcg ttctgcaaga acttctccgc cgcctcgcgc gggcgcccga ggtcccacag
     4261 cgcgccgccg ccgttgatgc gcgagacccc gaggttgctg atcgtgatca cgttcgaggg
     4321 gtcgacgcgc gacagcgtct gccagtccgc ggccgccgca tccgacgact cgaggcggcg
     4381 tgcctgctgc agcagcccgc catacgcggt ggtgttgttc gaggccacca gggcgcgccc
     4441 gcgcagcgcg atcatgtgcg tcggttggcg atcgagcacc gtggtcgcga ccttgcgcgc
     4501 ctcttcgccg acgcgcaggg cgtcttcgga acggccggcc gccgagagcg catccatcaa
     4561 ccacgccgac gtgatcacga agttggccgc ggcatcgttg tcggtgcgca ggccgtcgac
     4621 gccgcggtag gcctcgaccg cggcgcgcag ggtcaccagc gcttcggcgt tgcggtcggt
     4681 gcgctgctgc aggaagccga gctgggtgag ggcggccgcc tgcgcgcgcc gcaccgccgg
     4741 gctcgcgtcc ggcgccgcgg cggcctcctt cagcacgtcg atcgcgcgcc gcgccggcac
     4801 cagcgcctcg gtgcgctggc cgtcggacat gaggcgcgcc tgcgccgaga gcgccatcgc
     4861 gaggccgatc gtggtgggct cgctcatgtc gccctgcgca cgcagcgcgt cgagtgtcgc
     4921 gatcgatggg gcgaggacct tgcgcgcctc ctcggcccgg ccctggttgc gcagcaccgc
     4981 gccgtagcgc gcctgcgcca gcgcctggtt gcgccgcgtc tcgtcgccgc gcagcccggc
     5041 gggcagcccg tcgtagtacg cgagcgagcg ccgggccagc tcgccgacga tctcgagccg
     5101 gccgacgggc tcgagctcgc ggtagaagtc gtcgagcagg tagacgatca ggcgctccga
     5161 ctcgccgcgc gccgcctcgg cgaaggcgcg cgtcttctgc gcctggtgca tgccgtagat
     5221 gccgaacgcc gccgccaccg cggcgcccac ggcgagcagg atgcacacgc cggcgatctg
     5281 ccgcgcgcgc accagcgcgc gccgcgtcgt cgcctcgcgc tcgcgctgcg ccgcgagcgc
     5341 ggactccgcc
//
LOCUS       DASVHM010000707         1953 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1351787, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000707 DASVHM010000000
VERSION     DASVHM010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1351787"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..484)
                     /locus_tag="VF308_13020"
     CDS             complement(<1..484)
                     /locus_tag="VF308_13020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013594808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEX7437624.1"
                     /translation="MIPGLPTLTITNAATWLIAAGATAGVILQPWRSREAAWALGGAA
                     LLLVAGLVPWVDAAHAVGRGTDVYLFLAGMMLLAELTRREGLFDFLAVLAVRHARGSA
                     PRLFALVYAIGTLVTVFMSNDATAVVLTPAVCAVAKKAGARPLPYLLACALIANAASF
                     V"
     gene            complement(563..1261)
                     /locus_tag="VF308_13025"
     CDS             complement(563..1261)
                     /locus_tag="VF308_13025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003071968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437625.1"
                     /translation="MLQVEGLHTHYGAAHILHGVTLMIEAGTSVGLLGRNGMGKTTLI
                     RSLMGYVRPTAGRVQWNDRDVTGFAPERMARLGIGYVPEGRGVFPNLSVRENLVMAAR
                     AGIDGTRAWTLERVLGTFPRLAPRLDYGGQQLSGGEQQMLAIGRALMTNPQLLILDEA
                     TEGLAPLVVAEIWRVIGDIRATGMATLVVDRDYRKVGAHSDQLVVLQKGRVVLAGPSE
                     ALRGGDRLASYLGV"
     gene            complement(1263..>1953)
                     /locus_tag="VF308_13030"
     CDS             complement(1263..>1953)
                     /locus_tag="VF308_13030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003069654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437626.1"
                     /translation="VNAVSIDLQRGEVHAVIGTNGAGKSTLINMLSGELAPTEGTIRL
                     AGADITAWSQPKRARAGIGRSYQRTNIFDAFSVFENARLSAQAAHQRTWALWEGARAC
                     ARSCRVAGEALAAVGLAESAQQSAGTLSHGGKRQLEIAMCLATRPQVLLLDEPLAGMG
                     AEETERMLALLAELKRDHAVLLVEHDMDAVFRIADRITVMVNGEVIATDVPDNIRVNP
                     EVRVAYLGEEQ"
BASE COUNT          291 a          681 c          704 g          277 t
ORIGIN      
        1 atacgaaact cgccgcgttg gcgatgaggg cgcaggcgag cagatagggc agcggtctcg
       61 cgcccgcctt cttcgccacc gcgcagaccg cgggcgtgag cacgaccgcg gtggcgtcgt
      121 tcgacatgaa gaccgtgacc agcgtcccga tcgcatagac cagcgcgaac aggcgtggcg
      181 ccgagccgcg cgcgtggcgc accgcgagca ccgcgaggaa gtcgaaaagg ccctcgcgcc
      241 gcgtcagctc ggcgagcagc atcatgccgg cgaggaacag gtagacgtcg gtgccgcgtc
      301 cgaccgcatg cgccgcatcg acccagggca cgaggccggc gacgagcagc agcgcggccc
      361 cgcccagcgc ccaggccgct tcgcggctgc gccacggctg caggatgacg cccgccgtgg
      421 cgccggcggc gatcagccag gtcgcggcat tggtgatggt gagcgtcgga aggccgggga
      481 tcatcgatcg gtcgaggtcg tgggacgccg cgcggcctcc cggcaatcgg cgttcccggc
      541 aggtcggccg cttggcgccg ggtcagacac cgaggtacga ggcgagccga tcgccgccgc
      601 gcagcgcctc ggacgggccg gccagcacga cacggccctt ctgcagcacg acgagctggt
      661 ccgagtgcgc gccgaccttg cggtagtcgc ggtcgaccac cagggtcgcc ataccggtcg
      721 cgcggatatc gccgatcacg cgccagatct cggcgacgac gagcggcgca aggccctcgg
      781 tcgcctcgtc gaggatcagg agttgcgggt tcgtcatcag cgcgcgaccg atcgcgagca
      841 tctgctgctc gccgcccgag agctgctggc cgccatagtc gaggcgaggc gcgaggcgcg
      901 gaaatgtgcc gagcacacgc tcgagggtcc aggcgcgagt accgtcgatc ccggcgcgcg
      961 ccgccatcac gaggttctcg cgcactgaga gattggggaa gacgccgcgg ccctcgggca
     1021 cgtagccgat gccgagtcgc gccatgcgct ccggcgcgaa gccggtgaca tcgcggtcgt
     1081 tccattgcac ccgccccgct gtcggccgca cgtagcccat cagcgagcgg atcagcgtcg
     1141 tcttgcccat gccgttgcgg ccgagcaggc cgaccgaggt gccggcctcg atcatcagcg
     1201 tgacgccgtg caggatgtgc gcggcgccgt agtgggtgtg caggccttcg acctgcaaca
     1261 cctcattgct cctcgccgag gtacgcgacg cgcacctcgg ggttgacccg gatgttgtcc
     1321 ggcacatcgg tcgcgatgac ctcgccgttg accatcacgg tgatccggtc ggcgatgcgg
     1381 aacaccgcgt ccatgtcgtg ctccaccagc agcacggcat ggtcgcgctt cagctcggcc
     1441 agcaatgcga gcatgcgttc ggtttcctcg gcccccatgc cggcgagcgg ctcgtcgagc
     1501 aggagcacct gcgggcgggt cgcgaggcac atcgcgatct cgagttggcg cttgccgcca
     1561 tggctcaggg tgccggccga ctgctgtgcg ctttcggcca ggccgaccgc ggcgagcgcc
     1621 tcgccggcaa cgcggcagct gcgcgcgcag gcacgcgcgc cctcccacag tgcccaggtg
     1681 cgctggtgcg cggcctgggc cgagaggcgc gcgttttcga agacgctgaa cgcgtcgaat
     1741 atgttggtgc gctggtagct gcgaccgatg ccggcgcgcg cgcgcttggg ctgcgaccac
     1801 gcggtgatgt cggcgccggc gagccggatc gtcccttcgg taggcgccag ctctcccgag
     1861 agcatgttga tcagggtcga cttgcccgcc ccgttggtgc cgatgacggc atggacctcg
     1921 ccgcgctgca ggtcgatcga cacggcattg acc
//
LOCUS       DASVHM010000708         3656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_49260, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000708 DASVHM010000000
VERSION     DASVHM010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3656
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49260"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..274)
                     /locus_tag="VF308_13035"
     CDS             complement(<1..274)
                     /locus_tag="VF308_13035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017877194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437627.1"
                     /translation="MRCSDVLGARGLCRRVLLCAWLAFALVAPAMAHKASDSYLQIEE
                     GAAGLALRWDIALRDLDAALELDLDGDGQLTWGEIKAGWPRIEAYAM"
     gene            complement(261..1433)
                     /locus_tag="VF308_13040"
     CDS             complement(261..1433)
                     /locus_tag="VF308_13040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013542977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437628.1"
                     /translation="MRTLTHLTGALIAGLFMSILAAHVHAAPINPTRDDEVVEILPAV
                     SGNRSEERRARKELASRPRDPVLAVAVATRYLAQAHELGDPRFAGLAMAAIGAWTDAA
                     TMPPDVLMMKATLQQYLHEFDDSVRSLQALLARPTAQSDPQAWLTLATLRRVQGRYAD
                     SDEACRQVGRSGAALHASACFAENAALRGQVAAARTTLGGLLSQPGVPPSTQAWLLTT
                     VAELDQRDARAAAADAAFRAVLQLDPDAYAQVAYADFLIDQGRSLEALKLLKDQTRSD
                     AVLLRLAIAGTQAKSSGAERDAAEMRERIALANERPEARKFHGREQAMFALFVERNAA
                     LALDLARGDVEQQREPLDLLTFARAARASGEPDALKEARRLRDSVGLHDRRIDALL"
     gene            complement(1478..1723)
                     /locus_tag="VF308_13045"
     CDS             complement(1478..1723)
                     /locus_tag="VF308_13045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437629.1"
                     /translation="MKKQLPVLVLCAAAVLAACGGGDDTPPPPTSQVPASASASIGGF
                     IAYLRALVVAAADSLEPVDVSGVTPPNDETSEPQVVD"
     gene            complement(1735..3363)
                     /locus_tag="VF308_13050"
     CDS             complement(1735..3363)
                     /locus_tag="VF308_13050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4331 domain-containing protein"
                     /protein_id="HEX7437630.1"
                     /translation="MKSHLSPRTRLLPVLAAVGALCALSATPAQASSHREAPAITTMP
                     KVDATDFYMFNSYEANRLTGPGYVTLIANYLPLQDAYGGPNYFKLDPNAMYEIHIDNN
                     GDAKEDITFQFRFQNKLKSTSLMIGGKSVAIPLTQSGQVSAPNAAALNVNETFTVDIV
                     RGDRRTGTHGSVTNAANGSATFDKPADNIGTKTIPNYAAYAAQHVYNVNIPGCTGAGK
                     VFVGQRKDPFAVNLGVIFDLLNVPGVADFSAGEATFLLDPSMKDAGKDDLQDANVTTL
                     ALEVPTSCLVAAGANDPVIGGWTTASLRQGSLLSAAPKSGYQTAAIFGGAWTQVSRLG
                     MPLVNEVVIGLPDKDKFNASKPKDDGQFATYVTNPTLPALVEIALATPNIAPTNFPRN
                     DLVTTFLTGIAGVNQPQAFGTSPATGVASEMLRLNTAIAPTAEATQNRLGLLGGLLAG
                     LGGDLAGYPNGRRPNDDVVDISLIAVMGGLCVANGNADTYKFGAACKPSAAPLGAAVF
                     GLHDGVDQAGPKVKANGPLLPVFPYVGLPIPGAR"
BASE COUNT          569 a         1184 c         1297 g          606 t
ORIGIN      
        1 ccatggcgta ggcctcgatc cgcggccatc cggccttgat ctcgccccag gtcagctgcc
       61 cgtcaccgtc caggtcgagt tcgagcgcgg catcgaggtc gcgcagcgcg atgtcccagc
      121 gcagcgccaa accggcggcg ccttcctcga tctggaggta ggaatcactc gccttgtgcg
      181 ccatcgccgg ggcgaccagg gcaaaggcaa gccatgcgca gagcaggacg cgccggcaaa
      241 gaccgcgcgc accaagcaca tcagagcagc gcatcgattc ggcggtcatg caggccgacg
      301 ctgtcgcgca gccgcctggc ttccttcagc gcgtcgggct cgccgctggc gcgcgccgcc
      361 cgcgcgaagg tcagcagatc gagcggttcg cgctgctgtt cgacatcgcc ccgcgccagg
      421 tcgagcgcga gcgccgcgtt gcgctcgacg aaaagggcga acatcgcctg ctcgcgaccg
      481 tgaaacttgc gcgcctcggg ccgttcgttg gccaaggcaa tgcgctcgcg catctcggcc
      541 gcgtcacgct cggcacccga cgacttcgcc tgggttccgg cgatcgccag ccgcagcagc
      601 acggcgtcgc tgcgggtctg gtccttgagc agcttgaggg cttcgagcga ccggccctgg
      661 tcgatcagga aatcggcgta ggcgacctgc gcgtaggcat cgggatcgag ctgaagcacg
      721 gcgcgaaacg ccgcgtctgc ggccgcggca cgagcgtcac gttgatccag ttcggcgacg
      781 gtcgtcagca gccaggcttg tgtcgagggc gggacgccgg gctgcgagag caaaccgccg
      841 agcgtcgtcc gggccgccgc gacctggccg cgcaacgcag cattttcggc gaaacacgcg
      901 ctcgcgtgca gcgcggcgcc gctgcgcccg acctgcctgc aggcctcgtc ggaatcggcg
      961 tatcgccctt ggacccggcg caacgtcgcg agcgtgagcc aggcctgcgg gtcggattgc
     1021 gcggtcgggc gcgcgaggag cgcctgaagg ctgcgcacgg aatcgtcgaa ctcgtgcagg
     1081 tactgctgca gcgtcgcttt catcatcagc acgtcgggcg gcatagtcgc agcgtcggtc
     1141 caggcgccga tcgccgccat cgccaggccg gcgaagcgcg gatcgccgag ttcgtgggcc
     1201 tgggccagat agcgcgtggc caccgcgacg gcgagcaccg gatcgcgcgg gcgcgaggcc
     1261 agttccttgc gcgcccggcg ctcctcgctg cgattgccgg acacggccgg caagatttct
     1321 acgacctcgt cgtcgcgcgt ggggttgatc ggcgcggcat gcacatgggc cgccaggatg
     1381 gacatgaaaa gaccggcgat caaggcgccg gtcaggtggg tcagggtgcg catcggagga
     1441 tgaatgaagg cggcggacct ggcccgccgt ccgtttctca atctaccact tgaggctcgc
     1501 tcgtttcatc gttgggcggc gtgactccgc tgacatcgac cggctccagg ctatcggccg
     1561 ccgcgacgac caaagcccga aggtaggcga tgaagccacc gatcgacgcg ctcgcgctgg
     1621 cgggcacctg cgacgtgggc gggggaggcg tgtcgtcgcc gccgccgcat gccgcgagca
     1681 ccgcggccgc gcacagaacc agaacaggca gttgtttctt catgccgttc tccttcaacg
     1741 tgcgccgggg atcggcaggc cgacatacgg gaagaccggc aggagcgggc cgttggcctt
     1801 gaccttcgga ccggcctgat cgacgccgtc gtgcaatccg aacacggcgg caccgagcgg
     1861 cgcggcgctg ggcttgcagg ccgcgccgaa cttgtaggtg tcggcgttgc cgttggccac
     1921 gcacaagccg cccattaccg caatgagcga gatgtcgacg acgtcgtcgt tcgggcggcg
     1981 cccgttcgga tagccggcga gatcgccgcc gaggccggca agcaggccgc ccagaaggcc
     2041 gagccggttc tgcgttgctt cggcggtcgg cgcgatcgcc gtgttcaggc gcaacatctc
     2101 ggaggcaaca ccggtcgccg gagaggtgcc gaaggcctgc ggctggttca cgcccgcgat
     2161 gcccgtgagg aacgtcgtga cgaggtcgtt gcgcggaaag tttgtcggcg cgatgttcgg
     2221 cgtcgccaat gcgatctcga ccagcgccgg cagcgtcggg ttcgtcacgt aggtcgcgaa
     2281 ctggccgtca tccttgggct ttgaggcgtt gaacttgtcc ttgtcgggca ggccgatcac
     2341 gacttcgttg acgagcggca tgccgagccg cgagacctgc gtccacgcgc cgccgaagat
     2401 ggccgcggtc tggtagccgc tcttgggcgc cgcgctcaac aagctgccct ggcgcaggct
     2461 ggccgtggtc cagccgccga tcaccgggtc gttcgcaccg gccgcgacga ggcaactggt
     2521 cggcacctcg agtgcgagtg tcgtcacgtt ggcgtcctgc aggtcgtcct tgccggcatc
     2581 cttcatgctc gggtcaagca ggaacgtcgc ctcgcccgcg ctaaagtcgg ccaccccggg
     2641 aacgttgagc aggtcgaaga tcacgccgag gttgaccgcg aacggatcct tgcgctggcc
     2701 gacgaacacc ttgccggccc cggtgcagcc ggggatgttg acgttgtaga cgtgctgcgc
     2761 cgcataggcg gcgtagttgg gaatggtctt cgtgccgatg ttgtcggccg gcttgtcgaa
     2821 ggtcgcgctg ccattggcag cgttcgtgac cgagccgtgc gtgccggtgc ggcgatcgcc
     2881 gcgcacgatg tcgaccgtga acgtctcgtt gacgttcagc gcggcggcgt tgggcgcgct
     2941 gacctggccg gattgcgtca gcgggatcgc gacgctcttg ccgccgatca tcagcgaggt
     3001 gctcttgagc ttgttctgga agcggaactg gaacgtgatg tcttccttcg catcgccgtt
     3061 gttgtcgatg tggatctcgt acatcgcgtt cgggtcgagc ttgaagtagt tcgggccgcc
     3121 gtaggcgtcc tgcagcggca ggtagttggc aatcagggtc acgtagcccg ggccggtgag
     3181 gcggttcgcc tcgtagctgt tgaacatgta gaaatcggtc gcgtcgacct tcggcatcgt
     3241 cgtgatcgcc ggcgcctcgc ggtggctcga cgcctgcgcc ggagtggcgc tcaaggcaca
     3301 gagcgcgccg acggccgcca gtacgggcag cagccgggtg cgcggggaga gatgtgattt
     3361 catggtcttc cttgctcctg gtttgaggac aaatccgcgc cgggtggccc ggttccggtc
     3421 gacgttgact gggcagaaga acgtctgtgg atgcgtacgc ccggctggcg caactggatg
     3481 caaggagaac catgaagagt gatcgcgcgg ggccgcggtg cgaaaccagc ccgtaagaag
     3541 tatgctgagc cggcgaccaa agtcacctcg acttcgatgg gttcagcatg aagacgacga
     3601 accgttcagc gaacgccgcg acagcgctcg ccacgatcgc cgcgctgacg ttcctg
//
LOCUS       DASVHM010000709         2371 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_194706, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000709 DASVHM010000000
VERSION     DASVHM010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194706"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..358
                     /locus_tag="VF308_13055"
     CDS             <1..358
                     /locus_tag="VF308_13055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011808329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437631.1"
                     /translation="SGGQLQRVAIARALVAAPALLVADEPVSMVDASLRMAIVELFRK
                     LRDELAVSIIYITHDLATAYTISDRVVIMRQGRVVETGAARSTLDNPQHPYSIELKSA
                     VLAPEVAEAIPGAART"
     gene            391..1941
                     /locus_tag="VF308_13060"
     CDS             391..1941
                     /locus_tag="VF308_13060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008917038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-N-arabinofuranosidase"
                     /protein_id="HEX7437632.1"
                     /translation="MRKVSVALRRDAVIGETDPRLFGAFVEHLGRCVYGGIYEPGHET
                     ADKNGFRRDVLALVRELAPTIMRYPGGNFVSGYNWEDGVGPARRRPRRLDLAWMSTET
                     NAFGTNEFIDWCRLAEIEPMLAVNLGTRGGDAARNLLEYCNHPGGTALSDLRARHGWK
                     EPHGVKFWCLGNEMDGPWQMETKTATEYGRIATEAAKMMKWIDPGIELAACGSSGRNM
                     PTFGAWEDTVLAHTFEHVEYISLHTYLNNYADDAPAFLASPDLMDSFIEEVVAIADAV
                     AARRRSPKRIMLSFDEWNVWYRTRRSRDVRVKPGWPVAPEILEEVYSMEDALAFGGAC
                     ISLLNHADRVKVACLAQLVNVIAPIMTETGGPAWRQTIFHPFAQMSRFGRGRVLRAEI
                     DSPTYSATYFDPRGATPLHFALPSVPYLKLAAVEDPASGALTLFALNRNLEEPMALDV
                     AIHGFGKPRLDVALQLQHRNLKATNTRDKPDRVAPTALKDVKLGADRLQARLAPASWN
                     VIRLDRPH"
     gene            complement(1976..>2371)
                     /locus_tag="VF308_13065"
     CDS             complement(1976..>2371)
                     /locus_tag="VF308_13065"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006400374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7437633.1"
                     /translation="QFFAAQEVAADMKRSGGGSIVNFGSISWMLKQGGMPVYTIAKAA
                     VQGLTRSLARDLGPFNIRVNTLVPGWVMTERQLRLWVDATGRAEIARGQCINQPLLAE
                     HIARMALFLAADDSAMCTAQDFVVDGGWA"
BASE COUNT          393 a          843 c          767 g          368 t
ORIGIN      
        1 gtcgggcggc cagctgcaac gcgtggcgat cgcgcgcgcg ctggtcgcgg cgccggccct
       61 gctggtggcc gacgagccgg tgtcgatggt cgatgcgtcg ctgcgcatgg ccatcgtcga
      121 gctgttcagg aagctccgcg acgagctcgc cgtgtcgatc atttacatca cgcacgatct
      181 ggcgaccgcc tacaccatca gcgaccgcgt cgtgatcatg cgccagggcc gcgtcgtcga
      241 aaccggcgcc gcgcgcagca cgctcgacaa cccgcaacat ccgtattcga tcgaactcaa
      301 gagcgccgtg ctcgcccccg aggtcgccga agcgattccc ggcgcggcaa ggacctgatt
      361 cgctcatcca cccatcacgg agtgaacgtc atgcgcaagg tgtcagtggc tctcaggcgc
      421 gacgcggtca tcggcgagac cgatcctcgc ctcttcggtg ccttcgtcga acatctgggc
      481 cgctgcgtct atggcggcat ctacgagcca ggccacgaga ccgcggacaa gaacggcttc
      541 cggcgcgacg tgctcgcgct ggttcgcgaa ctcgctccga ccatcatgcg ctacccgggt
      601 ggcaacttcg tctccggcta caactgggag gacggcgtcg gccccgcccg gcgccggccg
      661 cgccggctcg acctggcctg gatgtcgacc gaaaccaacg ccttcggcac caacgagttc
      721 atcgactggt gccggctggc ggagatcgag ccgatgctcg cggtcaacct gggcacgcgc
      781 ggcggcgacg cggcgcgcaa cctgctcgag tactgcaacc atcccggggg caccgcgctt
      841 tccgacctgc gcgccaggca cggctggaag gaaccgcacg gcgtgaaatt ctggtgcctg
      901 ggcaacgaga tggacggccc ctggcagatg gagaccaaga ccgccaccga atacggccgc
      961 atcgccaccg aagcggcgaa gatgatgaag tggatagacc ccggcatcga gctcgcggcc
     1021 tgcggctcgt cggggcgcaa catgccgacc ttcggcgcct gggaagacac ggtgctcgcg
     1081 cacaccttcg agcatgtcga atacatctcg ctgcacacct acctcaacaa ctacgccgac
     1141 gacgcgccgg ccttcctcgc cagccccgac ctgatggaca gttttatcga ggaggtggtg
     1201 gcgatcgccg atgccgtcgc cgccaggcgc cgttcgccca agcgcatcat gctgagcttc
     1261 gacgaatgga atgtctggta ccgcacgcgc cgcagtcgcg acgtgcgcgt caagccaggc
     1321 tggccggtgg cgcccgaaat cctcgaggag gtctattcga tggaggatgc gctcgccttc
     1381 ggcggcgcct gcatctcgct cctcaaccac gccgaccgcg tgaaggtggc ctgcctcgcg
     1441 caactggtca acgtgatcgc gcccatcatg accgagaccg gcggcccggc ctggcgccag
     1501 accatcttcc atccgttcgc gcagatgagc cggttcggtc gcggccgcgt gctgcgcgcc
     1561 gagatcgact cgcccacgta ttcggcgacc tatttcgacc cgcgcggggc gacgccgctg
     1621 cactttgcgc tgccgtcggt gccatacctc aagctcgcgg cggtcgagga cccggccagc
     1681 ggcgcgctca ccctgttcgc gctcaatcgc aatctcgagg agccgatggc gctcgatgtc
     1741 gcgatccacg gcttcggcaa gcccaggctc gacgtggccc tgcaactgca gcaccgcaac
     1801 ctgaaggcca ccaacacccg ggacaagccc gaccgcgtgg cgccgacggc gttgaaggac
     1861 gtgaagctcg gcgcggatcg cctgcaggcc cgcctggcgc cggcgtcgtg gaacgtgatc
     1921 cggctcgatc gtccgcattg accggcgcgc gccgacccgc tccgccctcg gcccttcagg
     1981 cccagccccc atcgacgacg aagtcctgcg ccgtgcacat cgcactgtcg tcggcggcga
     2041 gaaagagcgc catgcgcgcg atgtgttcgg ccagcagcgg ctgattgatg cactggccgc
     2101 gcgcgatctc ggcgcggccg gttgcgtcga cccagagccg aagttgcctt tcggtcatga
     2161 cccagcccgg caccaaggtg ttgacgcgga tgttgaaggg accgagatcg cgcgccaggc
     2221 tgcgtgtcag gccctgcacg gcggccttgg cgatcgtgta gaccggcatg ccgccctgct
     2281 tgagcatcca gctgatcgat ccgaagttga cgatcgagcc accgccggag cgcttcatgt
     2341 cggccgccac ttcctgcgcg gcgaagaact g
//
LOCUS       DASVHM010000710         2119 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_991400, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000710 DASVHM010000000
VERSION     DASVHM010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_991400"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..273)
                     /locus_tag="VF308_13070"
     CDS             complement(<1..273)
                     /locus_tag="VF308_13070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437634.1"
                     /translation="MSNAEARILIATDVGADAEMLRRLLHAEYPKVVLSIQPASFVED
                     FDRHRPQVLVLAFKTLEAAERYYLGLYRHSAQVNATPHRTLLLCGKD"
     gene            complement(273..1943)
                     /locus_tag="VF308_13075"
     CDS             complement(273..1943)
                     /locus_tag="VF308_13075"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX7437635.1"
                     /translation="MDDCLSKPVQMAQLGTTLARWLPSAPTAPPSPAAAPDARDLPAF
                     DPTALARLIGDDSELLAEFGRDYLASARALADEVRTASAQGEWAQVGAVAHKLKSSSR
                     AVGALALGDCCERLELAGQAGDAEAVRALQPGFEATLEAVIAGLGGEAGSAATATRAA
                     ATGVLLVDDEPFYVEMLQRQLSMLGVAPVQALRSGESALEWLNGRDTSALLLLLDLDM
                     PGMDGVEFMRHLAERRFAGALALISGADVRVLETASKLARAHQLSVLTHLHKPVNSDT
                     LRELLQRWHGFTPALVRRRGKAYEAQELLRAIDAGELLLHYQPKVTLADGVLVGVEAL
                     VRWQHPVDGLVYPDSFIGTAESSGLIDALTRGVLTMALAQLRRWHDSGLALRMAVNIS
                     MNNLARLDFAEFVFDELARHCVPPTALVLEVTESQLASDVRAQMDILTRMRLRQVGLS
                     IDDFGTGHSSLAQLRDMPFDELKIDRGFVHGGGSNPTQSAIFGASLALAHQIGMKVVA
                     EGVEDRADWEFVRAAGCDIAQGYFVARPMPADELLDWAARWQRRFEVM"
BASE COUNT          318 a          765 c          717 g          319 t
ORIGIN      
        1 gtccttgccg cacagcagca gcgtgcggtg cggcgtcgcg ttgacctgcg cgctgtggcg
       61 atacagcccg aggtagtagc gttcggcggc ctcgagcgtc ttgaacgcca gcaccagcac
      121 ctgcggccgg tggcgatcga agtcctcgac gaaagaggcg ggctgtatcg acagcaccac
      181 cttcgggtac tcggcgtgca ggagccggcg cagcatctcg gcgtcggcac cgacgtcggt
      241 cgcgatcagg atccgcgcct cggcattgga catcacatta cctcgaaacg ccgctgccac
      301 cgtgcggccc agtccagaag ctcgtcggcc ggcatcggcc gagccacgaa gtagccctgc
      361 gcgatgtcgc agcccgcagc gcgcacgaat tcccagtcgg cgcggtcttc gacaccctcg
      421 gccacgacct tcatgccgat ctggtgcgcc agcgccaagc tggcgccgaa tatcgcgctc
      481 tgcgtcgggt tgctgccgcc tccatgcacg aagccgcggt cgatcttcag ctcgtcgaac
      541 ggcatgtcgc gcagctgagc cagcgacgag tgcccggtgc cgaaatcgtc gatcgacagt
      601 cccacttgcc tcaggcgcat ccgcgtcagg atgtccatct gcgcgcgcac gtcgctcgcc
      661 agttgcgact ccgtcacttc cagcaccagc gcggtcggcg gtacgcagtg gcgcgccagt
      721 tcgtcgaaca cgaactcggc gaagtccagc cgtgccaggt tgttcatcga gatgttgacg
      781 gccatccgca gcgcgagtcc gctgtcgtgc cagcggcgca gttgcgccag cgccatcgtg
      841 agcacgccgc gcgtgagcgc gtcgattagg ccgctgctct cggcggtgcc gatgaagctg
      901 tccggataga ccaggccgtc gacagggtgc tgccagcgca ccagcgcctc gacgccgacg
      961 agcacgccgt cggccagcgt tacctttggc tggtagtgca gtagcagctc gccggcgtcg
     1021 atcgcgcgca gcagctcctg cgcttcgtag gctttgccgc gacgtcgcac cagcgccggc
     1081 gtgaagccgt gccagcgctg cagcagttcg cgcagcgtgt ccgagttcac cggtttgtgc
     1141 aggtgggtca gcacgctcag ctgatgcgcg cgcgccagct tggacgccgt ctcgagcacg
     1201 cgcacgtcgg cgccgctgat cagcgccagc gcgccggcaa agcgcctctc ggcgaggtgg
     1261 cgcatgaact ccaccccgtc catgccgggc atgtccaggt cgagcagcag cagcagcgcc
     1321 gaggtgtcgc gcccgttcag ccattcgagc gccgattcgc ccgagcgcag ggcttgcacc
     1381 ggcgccacgc cgagcatgct cagctgtcgc tgcagcatct cgacgtagaa cggctcgtcg
     1441 tccaccaaca gcaccccggt cgctgccgcg cgagtcgcgg tggcggctga gcctgcctcg
     1501 ccgccgaggc cggcgatcac agcttcgaga gtggcctcga agcccggctg caacgcgcgc
     1561 accgcttcgg cgtcgccggc ctggcccgcc agctcgagcc gctcgcagca gtcgccgagc
     1621 gcgagcgcgc cgacggcgcg cgaagaagac ttgagcttgt gcgccaccgc gccgacctgg
     1681 gcccactccc cctgtgccga cgcggtgcgc acctcgtcgg ccaaagcgcg ggctgaggca
     1741 agatagtcgc gcccaaattc ggcgagaagc tcgctgtcgt cgccgatcag cctggccagc
     1801 gcagtcgggt cgaacgccgg caggtcgcgc gcgtcgggcg cagcggcagg cgacggcggc
     1861 gccgtcggcg cgctgggcag ccagcgcgca agagtcgtcc ccaattgcgc catctggacc
     1921 ggcttgctca ggcagtcgtc catgcccgcc gcgcggcatc gctcagcctc accgctcagc
     1981 gcgttggccg tcagcgcgac gattggcagg cgctctgccg caggctcccc ggcgcggatc
     2041 gcggcggcga gttcatgtcc atggcgggca tgtgcaggtc ggtcaacagc aggccgtagc
     2101 ggcggctcgc cagcgcgtc
//
LOCUS       DASVHM010000711         6890 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_49799, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000711 DASVHM010000000
VERSION     DASVHM010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6890
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49799"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..931
                     /locus_tag="VF308_13080"
     CDS             <1..931
                     /locus_tag="VF308_13080"
                     /inference="COORDINATES: protein motif:HMM:NF014692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydrogenase iron-sulfur subunit"
                     /protein_id="HEX7437636.1"
                     /translation="PRRLALATTLGLLALALLAPVASHLPADLSQAPGTLAFDWYLLF
                     VHPLVDATSAGFVWALLAAAVLTLLVMPFLPQGNAATVPPARVDPANCNGCRRCFADC
                     PYTAITMVPHPHWQTAGRPVRQLAQVDPDLCASCGICVGACPSSTPFRGGAELVTGID
                     MPQRPIDSLRRELDAGLAARRGLRTFVVLGCAEAPPVAPLGGGDVVALDLVCIGQLPP
                     SFIEYALRAGASGVVVTGCREGDCAFRLGQRWTEERLLGVREPRLRADAPREALRVVW
                     PSPGAPMAVARALDELRLRCDSAAHPAEAACHG"
     gene            924..1445
                     /locus_tag="VF308_13085"
     CDS             924..1445
                     /locus_tag="VF308_13085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437637.1"
                     /translation="MAEQRTSGRALAWLGQGVLYAVFALLIGVFSQWPPYRHLAPGQA
                     LIKLSFSHHGQRVSACRQLGAEELAKLPPNMRAPMQCPRERAPVVVELDIDGRQVVHQ
                     VAAPSGLSKDGASSVYHRVEVAAGEHRIAVRLKDSAAGNAFDYERAATVSLAPAHILV
                     IDFDAEKGGIVWQ"
     gene            1442..2881
                     /locus_tag="VF308_13090"
     CDS             1442..2881
                     /locus_tag="VF308_13090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEX7437638.1"
                     /translation="MNTSTSVLGAGPGAPAPAPARPSAYELSVPCGAQAALARGWLWL
                     ALLALIGSGLFSILLVLSRTPGLNRWFDVAEFFRVALVVHVDLSVLVWFVALAGLLWS
                     LNGSARAAAWGWAALALCSVGTALMALAPFVAHAEPIMANYIPVLDGPLFIAGLLIFG
                     AGAGVLVLRSLFTAPRIGIRFDGEGALRFGLNAAAVSAAVALAAFAASYAGVPHTLAG
                     RAYYEILFWGGGHALQFTWTLLMLVGWLWLASACGARLPLSPRVTLLMFVLALSAVFV
                     TPVAYLAHDIASVEHRNLLTWAMRFGGGVTIVPLGLAVLFGLARAPASLRRGSGPAAP
                     LRAALLASVLLFAAGGLIGVFISGSNVRIPAHYHGCIVGVTLALMGLVYHLLPRLGYG
                     TPQGRLATLQPALYGVGQLMHIVGLVWSGGYGVQRKVAGAEQVLRSNGEVAGMALMGL
                     GGAVAIAGGLVFVAVLIRALRQAAPAGRR"
     gene            2878..4794
                     /locus_tag="VF308_13095"
     CDS             2878..4794
                     /locus_tag="VF308_13095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX7437639.1"
                     /translation="MIRRLQGLLQWLFMRVEALFNSAFGDRLNPLYHLGAIGFFLFWI
                     IAGTGLYLYAFFETGVAGAYASVEALTHGQWFAGGILRSVHRYASDALVLVMLVHLLR
                     HFAFDRLRGFRWFSWLSGVALIWLVYLLGINGYMLPWDRVAQFVVVAVAEWLDALPTF
                     GGALIRNFIYPSSVNDRLFSLLAFMHIGISLLLLLLLWVHVQRVPKAKTQPPRPIVAS
                     VVVTLLALALLRPVLSQGGAADLAIAATTLQLDWFYLALLPLFYALPLSQVWMLVGAG
                     TALLVLLPWIPPRARRGLLGDARVAVHPGPHQMRVRPGETLLDAGLRQGLALRYECRN
                     GGCGVCVCSVLQGQVDLGPYQPSVLTEAMRAQGRALMCCARPLGDLEIEVDFEAASAP
                     ARPIAERRARIDRLERLSDDVMHVRLSLSGADRIAFTAGQYINIVLDDGERRAFSFAN
                     PPQQDDHIDLHVRRIPGGRFTGQVFTQAKVGDTLRFEGPFGEFTLQESVHPILFVAGA
                     TGFAPIKSIVEDAFARGVARPMWLYWGVRKRSDLYALELAEQWQREHDNLHFVPVLSD
                     VDPGDGWTGRTGMVHETMLADFPDLRGFEVYVCGSVKMVEAAVPAFMAQGLGETFCHT
                     DAFLPSLEPAFRRE"
     gene            complement(4885..5445)
                     /locus_tag="VF308_13100"
     CDS             complement(4885..5445)
                     /locus_tag="VF308_13100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEX7437640.1"
                     /translation="MPKIAEIEDTPNPNALKFTLQEPLTWGMSHSYENAGQAEGDELA
                     RALFAIEHVTNVFYVDRWLTVTQDGAAEWKELVRKIAVPLRAAPGAGAQSAATVAAAR
                     AGFDHLSERDRGRLDEINLLLDEQIRPYLQGDGGDLHILELDGDRLVVHYQGACGTCP
                     SSISGTLRGIENLLRTIEPDIEVVAA"
     gene            complement(5467..5955)
                     /locus_tag="VF308_13105"
     CDS             complement(5467..5955)
                     /locus_tag="VF308_13105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEX7437641.1"
                     /translation="MTADPKTLYQEVILDHNRKPRNYGRLDHPSHQAEGLNPLCGDHI
                     HVALELTGDMIAAIAFHGESCAICKASASMMTVAVKGRSRSDAEALMREFVDMATGRL
                     AAGDAAHIGRLAVFSGISELPMRVKCAILPWHTLHAAFDEVATTSTEAEADPMHTPIG
                     DA"
     gene            complement(5952..>6890)
                     /locus_tag="VF308_13110"
     CDS             complement(5952..>6890)
                     /locus_tag="VF308_13110"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEX7437642.1"
                     /translation="TDGINLVMQGWGRKFISAGDEIILTVLEHHSNIVPWQMLAAEKG
                     ATIRVVPIDDSGELLIDDYESLFSERTRIVGVGHVSNALGSINPVRRMIACAHARGVP
                     VLVDGAQAAPHLAIDVQELDCDFYAFSGHKMCGPTGIGVLYGRAALLEAMQPFKGGGD
                     MIHTVTFEKTTYNTIPHKFEAGTPPIAAAIGLGAAVDYLSALGMPAIAAHEHSLLRYA
                     TERLQELPGLRIIGTARHKAAVLSFALEGIHPHDVGTLLNQEGVAVRTGHHCAQPLMK
                     RLGVTATSRASFAFYNTLAEVDALVAGIRSVQKVFG"
BASE COUNT          823 a         2459 c         2377 g         1231 t
ORIGIN      
        1 gccgcgacgg ctggcgctgg cgacgacgct cggtctgctg gcgctggctc tgctcgctcc
       61 ggtggcgagc cacctccccg ccgatctgtc gcaggcgccg ggaacgctgg ccttcgactg
      121 gtacctgttg ttcgtgcatc cgctcgtcga tgcgacgtcg gccggtttcg tctgggcgct
      181 gctcgccgcc gcggtactga cgctgctggt gatgccgttc ctgccgcaag ggaacgcggc
      241 aacggtgcct ccggcgcgag tcgaccccgc caactgcaac ggctgccggc gctgcttcgc
      301 cgactgtccg tacacggcca tcacgatggt gccgcatccg cactggcaga ctgccggccg
      361 cccggtccgc cagctcgcgc aggtcgaccc cgatctctgc gcgagctgcg gcatctgcgt
      421 cggcgcctgc ccgtcgtcga cgccgtttcg cggcggcgcc gagctcgtca ccggcatcga
      481 catgccgcaa cggccgatcg actcgctgcg ccgcgagctc gacgccggtc tcgccgcgcg
      541 gcgaggcctg cgaaccttcg tcgtgctcgg ctgcgccgaa gcgccacctg tggcgccgct
      601 cggcggcggc gacgtcgtcg cgctcgacct ggtctgcatc ggccagctgc cgccgtcgtt
      661 catcgagtac gcgctgcgcg ccggcgcatc gggtgtggtc gtgaccggct gccgcgaagg
      721 agactgcgcc ttccgccttg gccagcgctg gaccgaggag cgcctgctcg gcgtccgtga
      781 gccccgcctg cgcgcggatg cgccgcgcga ggcgctgcgc gtcgtctggc cgagtcctgg
      841 cgcgccgatg gcggtggcgc gggcactcga tgagctgcgc ctgcgctgcg acagtgcggc
      901 gcatcccgct gaggccgcgt gtcatggctg aacagcgcac aagcggcagg gcgctcgcct
      961 ggcttggcca gggcgtgctg tacgcggtct tcgcgctgct catcggcgtg ttctcgcaat
     1021 ggccgccgta tcgccacctc gctcccggcc aggcgctgat caagctcagc ttcagccatc
     1081 acggccagcg cgtctcggcc tgcaggcagc tcggcgccga ggagctcgcc aagttgccgc
     1141 cgaacatgcg ggcgccgatg cagtgcccgc gcgagcgtgc gccggtcgtc gtcgagctcg
     1201 acatcgacgg ccggcaggtc gtgcatcagg tcgcggcccc gtccggcctg tccaaggacg
     1261 gtgcctcgtc ggtctaccac cgcgtcgagg tcgctgcggg cgaacaccgc atcgccgtcc
     1321 gcctcaagga cagcgctgcg ggaaacgcct tcgactacga gcgcgcggcc accgtgagcc
     1381 tcgcgcctgc gcacatcctc gtcatcgatt tcgacgccga gaagggcggc atcgtctggc
     1441 aatgaacacc tcgacatcgg tccttggcgc ggggcccggg gcgccggccc ccgcgccggc
     1501 gcggccctcg gcgtacgagc tctcggtgcc gtgcggcgcg caggccgcgc tcgcgcgcgg
     1561 ctggctctgg ctcgccctcc tggccctgat cggctccgga ctgttctcga tcctgctggt
     1621 gctgtcgcgc acgcccgggc tgaaccgctg gttcgatgtc gccgagttct tccgggtcgc
     1681 gcttgtcgtc cacgtcgatc tctcggtgct cgtctggttc gtcgccctcg cgggactgtt
     1741 gtggagcctg aacggctcgg cgcgcgccgc tgcctggggc tgggccgcgc tcgcgctctg
     1801 ctcggtcggc accgcgctga tggcgctcgc tcccttcgtc gcgcacgccg agccgatcat
     1861 ggccaactac attcccgtgc tcgacggccc gctcttcatc gccgggctgt tgatcttcgg
     1921 cgcgggcgcc ggcgtcctcg tcctgcgcag tctcttcacc gcgccccgga tcggcatccg
     1981 cttcgacggc gagggcgcgc tgcgcttcgg cctcaacgcg gcggccgtgt ccgccgcggt
     2041 cgcgctcgcc gccttcgccg cctcgtatgc cggcgtgccg cacacgctcg ccggcagggc
     2101 ctattacgag atcctgttct ggggcggcgg ccacgcgctg cagttcacct ggaccttgct
     2161 catgctcgtc ggctggctct ggctggcgag cgcctgcggc gcgcggctgc cgctcagccc
     2221 gcgcgtgacg ctgctgatgt tcgtgctggc gctctcggcg gtgttcgtga cgccggtcgc
     2281 ctatctcgcg cacgacatcg catcggtcga gcaccgcaac ctgctgacat gggcgatgcg
     2341 cttcggcggc ggcgtgacga tcgttccgct cggcctcgcg gtgctgttcg gcctcgcgcg
     2401 cgcaccggcg agccttcgcc gcggatcggg tccggccgcc ccgctgcgcg cggcgctgct
     2461 cgcgtcggtg ctgctgttcg ccgccggcgg gctgatcggc gtcttcatct cgggcagcaa
     2521 cgtccgcatt cccgcgcact accacggctg catcgtcggc gtcaccctcg cgttgatggg
     2581 gctcgtctac cacctgctgc cgcggctggg ctacgggacg ccgcagggcc gcctggcgac
     2641 gctgcagccc gccttgtacg gggtcgggca gctgatgcac atcgtcggcc tggtctggtc
     2701 cggcggctac ggcgtgcagc gcaaggtcgc cggtgccgag caggtgctgc gcagcaatgg
     2761 cgaagtggcc ggcatggcgc tgatgggttt gggtggcgcg gtcgcgatcg ccggcggcct
     2821 ggtgttcgtc gcggtcctga tccgggcatt gcgccaggcg gcgcccgcgg gccgccgatg
     2881 atcaggcggc tgcagggcct cctgcagtgg ctcttcatgc gcgtggaggc gttgttcaac
     2941 agcgccttcg gcgatcgcct caacccgctg tatcacctcg gcgcgatcgg cttcttcctg
     3001 ttctggatca tcgccggcac gggcctctat ctctacgcgt tcttcgagac cggcgtcgcc
     3061 ggcgcgtacg cctccgtcga ggcgctcacc cacgggcaat ggttcgccgg cgggatcctg
     3121 cgcagcgtgc accgctacgc gtcggatgcg ctcgtgctcg tgatgctggt gcacctgctg
     3181 cgtcacttcg ccttcgaccg cctgcgcgga ttccgatggt tctcgtggct ctccggcgtg
     3241 gcgttgatct ggctcgtcta cctcctgggc atcaacggct acatgctgcc gtgggaccgc
     3301 gtcgcccagt tcgtggtggt cgcggtcgcc gagtggctcg acgccttgcc gaccttcggc
     3361 ggcgccctga ttcgcaactt catctacccg agcagcgtca acgaccgcct cttctcgctc
     3421 ctggcgttca tgcacatcgg catttcgctg ctgctgttgc tgctgctctg ggtccacgtg
     3481 cagcgcgtcc cgaaggcgaa gacgcagccg ccgcggccga tcgtcgcgag cgtcgtcgtc
     3541 acgctgctgg cgctggccct gctgcggccg gtgctcagcc agggcggcgc cgccgacctc
     3601 gcgatcgctg cgacgacgct tcagctcgac tggttctacc tggcgctgct gccgctcttc
     3661 tatgccctgc cgctgtcgca ggtctggatg ctcgtcggcg ccggcaccgc gctgctggtg
     3721 ctgttgccct ggattccgcc gcgcgctcga cgcggcctcc tcggcgacgc ccgcgtcgcg
     3781 gtgcatcccg gtccgcatca gatgcgggtg cgaccgggcg agaccttgct cgatgccggc
     3841 ctgcgccagg gcctggcgct gcgctacgaa tgccgcaacg gcggctgcgg cgtgtgcgtg
     3901 tgcagcgtcc tccagggtca ggtcgatctc ggcccgtacc agccgagcgt gctcaccgag
     3961 gcgatgcgcg cccaggggcg ggcgctgatg tgctgcgccc ggccgctcgg cgatctcgag
     4021 atcgaggtcg acttcgaggc ggcgagcgcc ccggcgcgcc cgatcgcgga gcggcgcgcg
     4081 cgcatcgacc gtctcgagcg gctgagcgac gacgtcatgc acgtgcgcct gagcctttcc
     4141 ggcgccgacc gcatcgcctt cactgcggga cagtacatca acatcgtgct cgacgacggc
     4201 gagcggcgcg cgttctcctt cgccaacccg ccgcagcagg acgaccacat cgatttgcac
     4261 gtgcgccgca ttccgggcgg ccgcttcacc gggcaggtct tcacgcaggc caaggtcggc
     4321 gacacgctgc gcttcgaagg cccgttcggc gagttcacgc tgcaggagag cgtgcatccg
     4381 atcctgttcg tcgccggtgc caccggcttc gcgccgatca agagcatcgt cgaggatgca
     4441 ttcgcgcgcg gcgtggcacg gccaatgtgg ctctactggg gcgtgcgcaa gcgctccgac
     4501 ctgtatgccc tcgagctggc cgagcagtgg caacgcgagc acgacaatct gcacttcgtg
     4561 ccggtcctgt cggacgtgga ccccggcgac ggctggaccg ggcgcaccgg gatggtccac
     4621 gaaaccatgc tcgccgactt cccggacctg cgcggcttcg aggtctacgt ctgcggttcg
     4681 gtgaagatgg tcgaggcggc cgtgccggcc ttcatggcgc agggtctcgg cgagaccttc
     4741 tgccacaccg acgcgttcct gccttcgctg gaaccggcgt tccgccgcga atgatccgtc
     4801 tgcgccgtca gggcgtcgag gcgggttccc gcgccgtgtc actcccgact gcgtctgcag
     4861 ccttcgagtc caaacccccg gcgactaggc tgcgacgacc tcgatgtcgg gctcgatcgt
     4921 ccggagcaga ttctcgatgc cccgcagtgt tcccgaaatc gagctcgggc acgtgccgca
     4981 tgcgccctgg taatgcacga ccaggcggtc gccgtcgagt tcgagaatgt gaaggtcgcc
     5041 gccgtcgcct tgcagatacg ggcggatctg ctcgtcgagc agcaggttga tctcgtcgag
     5101 gcggccccgg tcgcgttcgc tcaggtggtc gaagccggcc ctggcggcgg cgaccgtcgc
     5161 cgccgactgt gcgcctgcac cgggggcggc acgcagcggc accgcgatct tgcgcacgag
     5221 ctccttccac tcggccgcgc cgtcctgggt gacggtgagc cagcggtcga catagaagac
     5281 gttggtcacg tgctcgatcg cgaacagcgc gcgcgccagc tcgtcgcctt cggcctgccc
     5341 ggcgttctcg tacgaatgcg acatgcccca cgtcagcggc tcctgcaacg tgaatttcag
     5401 cgcgttcggg ttcggggtgt cttcgatctc ggcgatcttc ggcatgtcga ctcctcggtc
     5461 ggtgcgtcag gcatcgccga tcggcgtgtg catcgggtcg gcctcggcct cggtcgacgt
     5521 cgtcgcgacc tcgtcgaacg cggcgtggag cgtgtgccac ggcaggatcg cgcatttcac
     5581 gcgcatcggc agctcgctga tgcccgagaa caccgcgagc cgaccgatgt gcgccgcgtc
     5641 gccggccgcg aggcggccgg tggccatgtc gacgaattcg cgcatcagtg cctccgcgtc
     5701 gctccggctc ctgcccttca ccgccaccgt catcatcgac gccgacgctt tgcagatcgc
     5761 gcacgactcg ccgtggaacg cgatcgcggc gatcatgtcg ccggtaagct cgagcgccac
     5821 atgaatgtgg tcgccgcaga gcgggttcag cccttcggcc tggtggctcg gatgatcgag
     5881 ccggccgtag ttgcggggct tgcggttgtg atcgaggatc acttcctggt acagcgtctt
     5941 cgggtcggct gtcatccgaa gaccttctgc acgctccgta tgccggcgac gagcgcgtcg
     6001 acttcggcga gcgtgttgta gaacgcgaac gaggcgcgcg atgtcgcggt cacgccgagg
     6061 cgcttcatca gcggctgggc gcaatggtgg ccggtccgca ccgccacccc ttcctggttc
     6121 agcaaggtgc cgacgtcgtg cggatggatg ccttcgagcg cgaacgagag caccgcggcc
     6181 ttgtgccgcg cggtgccgat gatgcgcagg cccggcagtt cctgcagccg ctcggtcgcg
     6241 tagcgaagca aggagtgctc gtgggctgcg atcgccggca tgccgagcgc cgacaggtag
     6301 tcgaccgcgg cgcccaggcc gatcgccgct gcgatcggcg gcgtgccggc ctcgaacttg
     6361 tgcgggatcg tgttgtaggt cgtcttctcg aatgtcaccg tgtggatcat gtcgccgccg
     6421 cccttgaacg gctgcatcgc ctcgagcaac gcggcgcggc cgtagaggac gccgatcccg
     6481 gtcgggccgc acatcttgtg gcccgagaac gcatagaagt cgcagtccag ctcctgcacg
     6541 tcgatggcga ggtgcggtgc ggcctgggcg ccgtcgacca gcaccggcac gccgcgcgca
     6601 tgcgcacagg cgatcatccg gcgcaccggg ttgatgctgc ccagcgcatt cgagacgtgg
     6661 ccgacgccga cgatgcgggt gcgctcgctg aagagcgatt cgtagtcgtc gatcagcagc
     6721 tcgccggaat cgtcgatcgg aacgaccctg atcgtcgcgc ccttttcggc cgcgagcatc
     6781 tgccatggca cgatgttcga gtggtgctcc agcacggtca ggatgatctc gtcgccggcg
     6841 ctgatgaact tgcggcccca gccctgcatc accaggttga tgccgtcggt
//
LOCUS       DASVHM010000712         3334 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_267181, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000712 DASVHM010000000
VERSION     DASVHM010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3334
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267181"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..1460)
                     /gene="argA"
                     /locus_tag="VF308_13115"
     CDS             complement(120..1460)
                     /gene="argA"
                     /locus_tag="VF308_13115"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004042 - acetyl-CoA:L-glutamate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HEX7437643.1"
                     /translation="MNLVFPHTFVPWFRTVAPHIHAYHGKTFVVAIAGELIAAGKLSS
                     FAQDLSILHAMGIKLVLVHGFRPQVNEQLRSKGHESRYSQGLRITDAIALDSAQEAAG
                     QLRFEIEAAFSQGLPNTPMANAIVRVVSGNFLTAQPVGVVDGVDFIHSGVVRKVDAVA
                     IRRAIDIGAMVLLSPFGFSPTGEAFNLTMEDVATSTAIALQADKLLFVTEVAGIREDL
                     TDPESPIDTELALADAERLLAALPKPQRPSDPAWYLQHCVKACRGGVERSHILPFAVD
                     GALLMEVFTHDGIGTMVVDEKLESLRQATPDDIGGVLHLIEPYERDGTLVKRDRTEIE
                     RDIGHYTVIEHDGVIFGCAALYPYPEAKTAELAALTVSPMVQGQGDGERILKRVEHRA
                     KAAGLESIFVLTTRTMHWFIKRGFVQVEPDWLPEARKRKYNWDRRSQVLVKKLA"
     gene            1623..>3334
                     /gene="hrpA"
                     /locus_tag="VF308_13120"
     CDS             1623..>3334
                     /gene="hrpA"
                     /locus_tag="VF308_13120"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HEX7437644.1"
                     /translation="MSEKIQGVHAPAAARTRPGSALPPIEFPESLPVSARREEIGAAL
                     QEHQVIIVSGETGSGKTTQLPKIALALGRGKANTGRRIGHTQPRRIAATSVAKRIAQE
                     LNTPLGEVVGFKVRFQDRLSGGASVKLMTDGILLAETQSDPLLRAYDTLIIDEAHERS
                     LNIDFLLGYLRRILPRRPDLKVIVTSATIDAERFATHFASASGPAPVIQVSGRLYPVE
                     QRWRPFAETREYDLNDAIGDAVDELWRGSADGALGAAGSGDVLVFLPGEREIREAADY
                     LHKHHPPGVEVVPLFARLSQQEQDQVFEPHSARRIVLATNVAETSLTVPGIRYVIDVG
                     TARVKRYSYRNKVEQLLVEPVSQAAANQRAGRCGRVSDGVCIRLYDEADFAKRPRFTD
                     PEIMRSSLAGVILRMKALGLGSVEEFPFLEPPPRRAVADGYQLLNELGAVDDANELTS
                     IGRELSKLPLDPRVGRMILEARGREALTEVLIIASAFSVQEVRDRPLEQAQAADQAHK
                     KFDDEKSEFLGDLKLWKWLEAGRGGAGEHRLSNRKQEQLLRDNFISPRRVREWRDIHS
                     QLHHV"
BASE COUNT          535 a         1156 c         1115 g          528 t
ORIGIN      
        1 cttcggcttc tttcttcaga tacacgcatt gaaccgtacg ggccatgcca tttctcctga
       61 gtatgtaaga tcgcgtgccg ctccggcttc gcggcggcga cgacgagagc gcaaaggggt
      121 tacgcgagct tcttgacgag aacctgcgaa cgccggtccc agttgtattt tcgcttgcgg
      181 gcttcgggaa gccagtcagg ctcgacctgg acaaatccgc gcttgatgaa ccagtgcatt
      241 gtccgcgtcg tcagcacgaa gatgctctcg agacccgccg ccttggcgcg atgctccacg
      301 cgcttcaaga tccgctcacc gtcgccctgg ccctggacca tcggcgaaac ggtcagcgcc
      361 gccaactcgg cggttttcgc ctccgggtag ggatagagcg cggcgcagcc gaagatcacg
      421 ccgtcgtgtt cgatcacggt gtagtgaccg atgtcgcgtt cgatctcggt gcggtcgcgc
      481 ttgaccagcg tgccgtcgcg ttcgtagggc tcgatcaggt gcagcacgcc gccgatgtcg
      541 tcgggcgtgg cctggcgcag gctttcgagc ttctcgtcga ccaccatcgt gccgatgccg
      601 tcgtgcgtga acacctccat caagagggcg ccgtcgaccg cgaaaggcag gatgtgcgag
      661 cgctcgacgc cgccccggca ggccttcacg caatgctgca gataccaggc cgggtcggag
      721 ggtcgctgcg gcttgggcag ggcggccagc aggcgctcgg catccgcgag cgcgagctcg
      781 gtgtcgatag ggctttccgg atcggtgaga tcttcgcgga tcccggcaac ctcggtcacg
      841 aagagcagct tgtcggcctg cagcgcgatc gcggtgctcg tcgcgacgtc ttccatcgtc
      901 aggttgaaag cctctccggt gggcgagaag ccgaacggcg acagcagcac catcgcgccg
      961 atgtcgatcg cgcggcggat cgccaccgca tccactttgc gcaccacgcc actgtggatg
     1021 aaatcgacgc cgtcgacgac gccgaccggc tgcgcggtca ggaagttgcc cgagacgacg
     1081 cgcacgatcg cgtttgccat cggcgtgttc ggcagtccct gcgagaacgc cgcctcgatc
     1141 tcgaagcgga gctggccggc ggcttcctgg gcgctgtcga gcgcgatcgc atcggtgatg
     1201 cgcaggcctt ggctgtagcg cgactcgtgg cccttggagc gcagctgttc gttgacctgc
     1261 ggccgaaagc cgtgcaccag caccagcttg atgcccatcg cgtgcaggat cgagaggtcc
     1321 tgcgcgaacg acgagagctt gccggcggcg atcagctcgc cggcgatggc gacgacgaag
     1381 gtcttgccgt ggtacgcgtg gatgtgcggc gccacggtgc gaaaccacgg cacgaaggtg
     1441 tggggaaaga cgaggttcaa ggcggcgcgc ggcagatcgt ggccgcgatt cttgcatgac
     1501 gctcgctccg cgcacgtgcc gcttcgagcg ctatcgccgc gcgcccgatc gggcactgga
     1561 aatgggtgcg gcgcccctgc gtgcctccag gccaagaccg cctgcggata atggcccgat
     1621 cgatgtccga gaagatccag ggggttcatg ccccggccgc cgcacgcacc cgcccgggtt
     1681 cggccttgcc gccgatcgag tttcccgagt cgctgcccgt ctccgcacgc cgtgaggaga
     1741 tcggcgccgc gctgcaggag caccaggtca tcatcgtcag cggcgagacc ggatccggca
     1801 agacgacgca gctgccgaag atcgccctcg cgctcggccg cggcaaggcc aacaccggcc
     1861 ggcggatcgg ccacacgcag ccgcggcgca tcgccgcgac cagcgtcgcg aaacggatcg
     1921 cccaggagtt gaacacgccg cttggcgagg tcgtcggctt caaggtgcgc ttccaggatc
     1981 gcctctcggg gggcgcgagc gtgaagctga tgaccgacgg catcctgctc gccgagaccc
     2041 agtccgaccc gctgctgcgc gcctacgaca cgctgatcat cgatgaggcc cacgagcgca
     2101 gcctcaacat cgacttcctg ctcggctacc tgcgccgcat cctgccgcgc cggccggacc
     2161 tgaaggtgat cgtcacctcg gcgacgatcg atgccgagcg cttcgcgacg cacttcgcct
     2221 cggcctccgg cccggcgccg gtgatccagg tctccggccg tctctacccg gtcgagcagc
     2281 gctggcgccc gttcgcggaa acgcgcgagt acgacctgaa cgatgccatc ggcgatgcgg
     2341 tcgacgaact gtggcgcggc agcgccgacg gcgcgctcgg ggctgccggc tccggcgacg
     2401 tgctggtgtt cctcccgggc gagcgcgaaa ttcgcgaggc cgccgactac ctgcacaagc
     2461 accatccgcc gggtgtcgag gtcgtgccac tcttcgcccg actgagccag caggagcagg
     2521 accaggtctt cgagccgcac agcgcgcgcc gcatcgtgct cgccacgaac gttgccgaga
     2581 cttcgctcac cgtgcccggc atccgctacg tcatcgatgt cggcacggcc cgcgtcaagc
     2641 gctacagcta ccgcaacaag gtcgagcagc tgctcgtcga gccggtgagc caggccgccg
     2701 cgaaccagcg cgccggacgc tgcggccggg tcagcgacgg tgtctgcatc cgcctctacg
     2761 acgaggccga tttcgcgaag cggccgcgct tcaccgatcc cgagatcatg cgttcgtcgc
     2821 tggccggcgt gatcctgcgc atgaaggcgc tcgggctcgg ctcggtcgag gagtttccgt
     2881 ttctcgagcc gccgccgcgc cgcgccgtcg ccgacggcta tcaactgctc aacgagctcg
     2941 gcgccgtcga cgacgccaac gagctgacct cgatcggccg cgagctgtcg aagctcccgc
     3001 tcgacccgcg cgtcggccgc atgatcctcg aggcgcgcgg gcgcgaggcg ctcaccgagg
     3061 tgctgatcat cgccagcgcg ttcagcgtcc aggaggtgcg cgaccgcccg ctcgagcaag
     3121 cccaggccgc cgatcaggcg cacaagaaat tcgacgacga gaagtcggag ttcctcggcg
     3181 acctgaagct ctggaagtgg ctcgaggccg gccgcggcgg cgccggcgag caccgcctct
     3241 cgaaccgcaa gcaggagcag ctgctgcgcg acaacttcat ttcgccgcgg cgcgtgcgcg
     3301 agtggcgcga catccactcg cagctccacc acgt
//
LOCUS       DASVHM010000713         4143 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_774210, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000713 DASVHM010000000
VERSION     DASVHM010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4143
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_774210"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..1779
                     /locus_tag="VF308_13125"
     CDS             151..1779
                     /locus_tag="VF308_13125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012355529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-(methylthio)propionyl-CoA ligase"
                     /protein_id="HEX7437645.1"
                     /translation="MKGLMMQQPLLISSLLVHAEHHHGDQEVVSRRVEGDIHRTTYRA
                     LAARSRRMAKALAGLGVGRSDRVATLAWNGYRHLELYYAVSGSGAVLHTLNPRLHPDQ
                     VVYIADHAEDQILFFDLTFLPLIEAIAGRVKTIRHFVAMTDRAHMPATSKVANLLCYE
                     DLIDANDDGYEWPVFDEASASSLCYTSGTTGNPKGVLYAHRSTVLHTFAIALPDSLNC
                     SARDTILPVVPMFHVNAWGIPYAACMTGAKLVFPGPGLDGKSLYELFEYERVTLSAGV
                     PTVWQGLLGFVEANGFRFSTMRRTVIGGSACPPAMMKTFQERYDVQVLHAWGMTEMSP
                     VGTVAALKSKHLDLPHEAQFAIQSKQGRAVYGVDMKIVGADGADLPWDGKASGELMVR
                     GPWIISSYFKNEGGDPLVDGWFPTGDVATIDADGYMQITDRSKDVIKSGGEWIGSIDL
                     ENIAMAHPKVAMAACIAAQHAKWDERPLLIVMKKPGAELTREELLAFFEGRIAKWWTP
                     DDVVFVDAIPLGATGKMLKNRLREQYGKHLLEKT"
     gene            1776..2672
                     /gene="rarD"
                     /locus_tag="VF308_13130"
     CDS             1776..2672
                     /gene="rarD"
                     /locus_tag="VF308_13130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015015602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HEX7437646.1"
                     /translation="MNFGVACAALAFTCWGLYPLYFRQLAAVGAGEVLVHRVLWSLAF
                     LLVLLAMRRRWVWLAQVARRPRVLAAFCASAVLLSINWVTYIWSVGNGHVVDASLGYF
                     MTPLVNVVLGYTVLHERLRRAQWLALSLAALGVAWLTIQAGQLPWIALVLASSFGAYG
                     LLRKIATLGALEGLTLETMILLPAALAGLFVLETHGSARFPSPDLATDLWLIGVGPVT
                     AVPLLLFAAGARRLSLATLGLLQYLSPTLQFVLGVWIFHEPFSALRLIGFGLIWTALL
                     LYSLDGWRNSRRAAGPVLAPAP"
     gene            complement(2688..3266)
                     /locus_tag="VF308_13135"
     CDS             complement(2688..3266)
                     /locus_tag="VF308_13135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3501 family protein"
                     /protein_id="HEX7437647.1"
                     /translation="MTITKESLLTLEAYAKVRKSEKAKIIAHRRLRTVHLGEHVSVQF
                     EDEATIRRQIQEMLHIEKIFDADGIQSEIEAYLPLVPDGTNWTATMLIEYPDAHERKR
                     ELARLIGIEDRLFVEVEGHPRVHAIADEDLERENDEKTSAVHFVRFEFPKAARDAIRA
                     GAAVKLGCDHTHYPAHVTIAAETLASLAGDLR"
     gene            complement(3272..>4143)
                     /locus_tag="VF308_13140"
     CDS             complement(3272..>4143)
                     /locus_tag="VF308_13140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019425835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="heterodisulfide reductase-related iron-sulfur
                     binding cluster"
                     /protein_id="HEX7437648.1"
                     /translation="LDAALGVHPDAWLPELATRRFRWSTKKQGAATQVTNGARSPGKV
                     AIFSTCFVNYNEPGIGHDLVKLLEHNEIPYTLVEKESCCGMPKLELGDLDGVARHKEA
                     NIPVLARYAKEGYAIVTAVPSCTLMFKQELPLMFPDDADVKAVQQAMFDPFEYLIARH
                     KDGLLKIDFKAALGKVSYHVPCHGRVQKIGRKTEEMFRLIGETVSVQLNTVERCSGHA
                     GTYGVKTATHPIALKIGKPVFKAMARDEPDYISSDCAMAGHHIAQGMAVNGLPAAPLR
                     HPLSLVRMAYGLE"
BASE COUNT          615 a         1402 c         1372 g          754 t
ORIGIN      
        1 gccctcggat cgcgcgcggc gccgaagacg tagcgggcgg cgccggcctc gccggatgtg
       61 cggtcgcgaa tggcggcggc gccggggcac aattcattgc aagaccggtg cacacgccgg
      121 ggcccgaatt caaaacatcg aggagacgaa atgaaaggct tgatgatgca gcagccgctg
      181 ctgatttctt cgctgctggt ccatgcggag caccaccacg gcgaccagga agtggtgtcg
      241 cggcgggtcg agggtgatat ccaccggacc acctaccgcg cgctcgcggc gcgctcgcgc
      301 cgcatggcga aagcgctcgc cgggctcggc gtcgggcgca gcgatcgcgt cgcgacgctg
      361 gcctggaacg gctatcgcca cctcgagctc tactacgcgg tgtccggctc cggtgccgtg
      421 ctgcacacgc tcaatccgcg cctccacccc gaccaggtgg tctacatcgc tgaccatgcg
      481 gaagaccaaa tccttttctt cgacctgacg ttcctgccgc tcatcgaagc gatcgcgggg
      541 cgcgtcaaga cgatccggca cttcgtcgcg atgacggatc gcgcccacat gccggcgacc
      601 tcgaaggtcg ccaacctgct ctgctacgaa gacctgatcg acgccaacga cgacggctac
      661 gaatggccgg tcttcgacga ggcctcggcg tcgtcgctct gctacacctc gggcaccacg
      721 ggcaatccga agggcgtgct ctacgcccac cgctcgaccg tgctgcacac cttcgcgatc
      781 gccctgcccg actcgctcaa ctgctcggcg cgcgacacca tcctgccggt ggtgccgatg
      841 ttccacgtca acgcctgggg cattccgtac gccgcctgca tgaccggcgc caagctcgtc
      901 tttccggggc cgggactcga cggcaagtcg ctctacgaac tcttcgagta cgagcgcgtc
      961 acgctctcgg ccggcgtgcc gacggtgtgg caaggcctgc tcgggttcgt cgaggcgaac
     1021 ggcttcaggt tctcgacgat gcggcgcacc gtgatcggcg gctcggcctg tccgccggcg
     1081 atgatgaaga ccttccagga gcgctacgac gtccaggtgc tgcacgcctg gggcatgacg
     1141 gagatgagcc cggtcggcac ggtcgcggcc ttgaagtcga agcacctcga cctgccccac
     1201 gaggctcaat tcgcgatcca gtccaagcag ggccgcgcgg tctacggcgt cgacatgaag
     1261 atcgtcggcg cggatggcgc cgatctgccg tgggacggaa aggcctccgg cgaactgatg
     1321 gtgcgcgggc cctggatcat ctcgagctac ttcaagaacg aaggcggcga tccgctcgtc
     1381 gacggctggt tcccgaccgg cgacgtcgcc acgatcgacg ccgacggcta catgcagatc
     1441 accgaccgca gcaaggacgt gatcaagtcg ggcggcgaat ggatcggctc gatcgacctc
     1501 gagaacatcg cgatggcgca cccgaaggtc gcgatggccg cgtgcatcgc ggcccagcat
     1561 gcgaagtggg atgaacgtcc gctcctcatc gtgatgaaga agcccggcgc cgagctcacc
     1621 cgtgaggaac tgctggcgtt cttcgaaggt cgcatcgcca agtggtggac gcccgacgac
     1681 gtggtcttcg tcgacgcgat tccgctgggc gctaccggca agatgctgaa gaaccggctg
     1741 cgcgagcagt acggcaagca cctgctggag aagacctgaa cttcggcgtc gcctgcgcgg
     1801 ccctcgcctt cacctgctgg ggcctctatc cgctgtactt caggcagctc gccgcagtcg
     1861 gcgcgggcga ggtgctcgtg caccgcgtcc tctggtcgct cgccttcctg ctggtgctgc
     1921 ttgccatgcg ccggcgctgg gtctggctcg cgcaggtcgc gcgccggccg cgcgtgctgg
     1981 ccgcgttctg cgcgagcgcg gtgctgctgt cgatcaactg ggtgacctac atctggtccg
     2041 tcggcaacgg ccatgtcgtc gatgccagtc tcggctactt catgacgccg ctcgtcaacg
     2101 tggtgctcgg ctacaccgtg ctgcacgagc gcctgcggcg cgcgcagtgg ctggcgctct
     2161 cgctcgcggc gctcggcgtc gcctggctga cgattcaggc cggccagttg ccgtggatcg
     2221 cgctcgtcct cgcatcgagc ttcggcgcct atggcctcct gcgcaagatc gcgaccctcg
     2281 gcgcgctcga agggttgacg ctcgagacga tgatcctctt gcccgcggca ctcgccggcc
     2341 tgtttgttct ggagacgcac ggcagcgccc gtttccccag cccggacctg gcgaccgacc
     2401 tctggctcat cggcgtcggc ccggtcaccg cggtgccgct gctgctgttc gccgccggcg
     2461 cgcggcgcct gtcgctcgcg accctcgggc tcctccagta cctgagcccg accttgcagt
     2521 tcgtgctcgg cgtgtggatc ttccacgagc cgttttcggc gctccgcctg atcggcttcg
     2581 gcctgatctg gaccgcgcta ctgctctaca gcctcgatgg ctggcgcaac agccggcgcg
     2641 cagcagggcc ggtcctcgcg ccggcgccgt agcgccctct tcccgaacta gcgcaggtcg
     2701 ccggcgagac tcgccagcgt ttcggccgcg atcgtcacgt gcgccgggta gtgggtgtgg
     2761 tcgcagccca gcttgacggc agcgccggcc cggatcgcgt cgcgtgccgc cttcggaaac
     2821 tcgaagcgca cgaaatgaac cgccgaggtc ttctcgtcgt tttcgcgttc gagatcttcg
     2881 tcggcgatcg catgaacgcg cgggtgccct tcgacctcga cgaagagccg gtcctcaatc
     2941 ccgatcaggc gcgccagttc acgcttgcgc tcgtgcgcgt cggggtattc gatcagcatc
     3001 gtcgccgtcc agttggtgcc gtctggcacg agcgggaggt aggcctcgat ctcgctctgg
     3061 atgccatccg cgtcgaagat cttctcgatg tgcagcatct cctgaatctg gcgccggatc
     3121 gtcgcctcgt cctcgaactg cacgctgacg tgctcgccga gatgcaccgt gcgcaagcgg
     3181 cggtgcgcga tgatcttcgc cttctcgctc ttgcgaacct ttgcgtaagc ctcgagcgtg
     3241 aggaggctct ccttggtgat cgtcatgtcg tctattccag gccgtaggcc attcgaacca
     3301 ggctgagcgg atggcgcagc ggggccgccg gcagcccgtt gaccgccatg ccctgcgcga
     3361 tgtggtggcc ggccatcgcg cagtcggagc tgatgtagtc gggctcgtcc cgggccatcg
     3421 ccttgaacac gggcttgccg atcttcagcg cgatcggatg ggtggcggtc ttgacgccgt
     3481 aggtgcccgc atgtccggag cagcgctcga cggtgttgag ctggacgctg accgtctcgc
     3541 cgatgaggcg gaacatctcc tcggtcttgc ggccgatctt ctggacccgg ccgtggcagg
     3601 gaacgtggta gctgaccttg ccgagcgcgg ccttgaaatc gatcttgaga aggccgtcct
     3661 tgtggcgcgc gatcaggtac tcgaacgggt cgaacatcgc ctgctggacc gccttcacgt
     3721 cggcgtcgtc gggaaacatc agcggcagtt cctgcttgaa catcagggtg cacgaaggca
     3781 ccgcggtgac gatcgcataa ccttccttcg cgtaacgcgc gagcaccgga atgttggctt
     3841 ccttgtgccg ggcgacgccg tcgaggtcgc cgagttcgag cttgggcatg ccgcagcagc
     3901 tctccttctc gaccagggtg tacgggatct cgttgtgctc gagcagcttg accagatcgt
     3961 gcccgatccc gggctcgttg tagttgacga agcaggtcga gaagatcgcg accttgcccg
     4021 ggctgcgcgc gccgttcgtg acctgcgtcg ccgcgccttg cttcttggtg ctccagcgaa
     4081 agcgccgggt ggcgagctcg ggcagccagg catcgggatg gacgccgagc gccgcgtcga
     4141 gca
//
LOCUS       DASVHM010000714         3255 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_919077, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000714 DASVHM010000000
VERSION     DASVHM010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3255
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_919077"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..145
                     /locus_tag="VF308_13145"
     CDS             <1..145
                     /locus_tag="VF308_13145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX7437649.1"
                     /translation="LLSLVADTSADLLVMGCYGHSRAREWVLGGATRVILKSMTVPVL
                     MAH"
     gene            331..1590
                     /locus_tag="VF308_13150"
     CDS             331..1590
                     /locus_tag="VF308_13150"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX7437650.1"
                     /translation="MVSIKTVAPWQPFMGVDDGEDELMSDGTVAPVRERARKPAFDQS
                     PTRSQASGIVISADGYILTSAHAVADIEAANVVLADGREFSGRVVGFDTRSDVALMKI
                     DATGLVAARIGDPRRLAVGDWVAAIGAPFGFDATITAGIVSARRFFPGGLGIAFIQTD
                     VATNPGSSGGPLFNLDGDVVGMSSMVYTSSGGYMGVSFALPIDVAMDVVERLRTEGRV
                     VRGQLGARVQEVTPGLARAFGRTDTTGALVTRVDRGSAAERAGLKTGDIVLAAGDRRE
                     MSYAELQQVVAATSPGTRLPLAVWRAGAAHRVMIDIASLDSGSPPVPAAEVPVRGDRL
                     GLVVAEAPARGEALFASGSRLEVRESHGAALRAGIGAGDVIVAVNDVAIDRLASYQAA
                     LSKFRPGAYVALLIMRHGRLQYFALGP"
     gene            complement(1662..2012)
                     /locus_tag="VF308_13155"
     CDS             complement(1662..2012)
                     /locus_tag="VF308_13155"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA C4-type zinc finger protein"
                     /protein_id="HEX7437651.1"
                     /translation="MLPHDQLKALERRLDSREAELRQEIRAVRHRSEGHPPGEVSDAK
                     DDAAIDAQAVVADAETERDLAELREIRLARQRMADGSYGTCVDCGAEIDPRRMLAQPQ
                     TSRCVECQALSERA"
     gene            2301..>3255
                     /locus_tag="VF308_13160"
     CDS             2301..>3255
                     /locus_tag="VF308_13160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylacetate--CoA ligase family protein"
                     /protein_id="HEX7437652.1"
                     /translation="MLEAAVHGSPMYRHLLGPHRGPLRLSDMPVVRKAELMRSFDRWC
                     CDPALRLEPLRHFVADPGNIGRPFLDRYIVWESSGSSGQPALFVQDAAAMAVYDALEA
                     FRKPELRSMRRLLDPLGMSERIVFVGAIGGHFASTVSIERLRRLNPLLSQSISSVSFL
                     QPIELVTAQLDACKPTVVATYPSAAVLLAGEFRAGRLHCAPAEVWTGGETLTPGMRRF
                     VQEAFGCPVVDSYGASEFLTLACACRHGALHLNSDWAILEPVDERGAAVPPGTAGATT
                     LLTNLANHVQPLIRYDLGDRVTMRAQACPCGSHLPVIEVNGR"
BASE COUNT          433 a         1123 c         1140 g          559 t
ORIGIN      
        1 gctgctctcg ctcgtcgccg acacgtccgc agacctgctc gtcatgggct gctacggcca
       61 cagccgggcc cgcgagtggg tccttggtgg cgccacccgg gtgatcttga agtcgatgac
      121 ggtgccggtg ctgatggcgc attgagctgg cgccgggtca tggtcgcccc cacgtttgac
      181 ccggaccggc gccggcggat cgctgtcgcg gttcgacgcg tcgctttcgc gctcgtcgcg
      241 agcatcttcg ctggaaccgc cttcgccgcg gcaaggtccg cccaggcgac tcccgacttc
      301 gcgtcgtatg tttcgcggga agaagtcgtc gtggtcagca tcaagacggt cgccccctgg
      361 cagcctttca tgggcgtcga tgacggcgaa gacgagctca tgtccgacgg cacggtcgcg
      421 ccggtgcgcg agcgcgcccg caagccggcc ttcgatcagt ctccgacccg cagccaggcg
      481 tccggcatcg tcatttcggc cgacggctac atcctgacca gcgctcacgc ggtcgccgac
      541 atcgaggcgg cgaacgtcgt cctcgccgac ggacgtgaat tcagcggccg ggtcgtcggg
      601 ttcgacacgc gcagcgacgt cgcgctcatg aagatcgacg ccaccggcct ggtcgcggca
      661 cgcatcggcg acccgcgccg gctcgcggtc ggcgactggg tggccgccat cggcgcgccg
      721 ttcggcttcg acgcaaccat cacggccggc atcgtcagcg cgcgccggtt ctttcccggc
      781 ggcctcggca tcgccttcat ccagaccgac gtggcgacca accccggcag ctcgggcgga
      841 ccgctcttca atctcgacgg cgacgtcgtc ggcatgagct cgatggtcta cacctcgagc
      901 ggcggctaca tgggcgtctc gttcgctttg ccgatcgacg tcgccatgga cgtcgtcgag
      961 cgactgcgca cggagggccg cgtcgtccgc ggccaactcg gcgcccgggt ccaggaggtg
     1021 acgccggggc tggcccgtgc cttcggacgg accgatacca ccggcgcgct cgtgactcgc
     1081 gtcgaccgcg gcagcgcggc cgagcgtgcg ggcttgaaga ccggcgatat cgtcctcgcg
     1141 gcgggcgacc ggcgagagat gagctacgcc gagctgcagc aggtcgtcgc cgcgacctcg
     1201 cccgggaccc ggttgccgct cgcggtctgg cgtgccggcg cggcgcaccg ggtcatgatc
     1261 gacatcgcgt cactcgacag cggctcgccg cctgtcccgg cagcggaagt cccggtccgc
     1321 ggcgatcggc tcggcctggt ggtggccgaa gcgccggcgc gcggcgaagc gttgttcgcg
     1381 agcgggtcca ggctggaagt gcgggaatcg cacggcgccg cgcttcgcgc cggcatcggc
     1441 gccggcgatg tgatcgtcgc cgtcaacgac gtcgcgatcg atcgactcgc gtcctaccag
     1501 gcggcgttgt cgaagttcag gccgggtgcg tatgtcgcgc tgctgatcat gcggcatggc
     1561 aggcttcagt acttcgcgct cggcccttag gaccggcgca gggcgatcga ggcgacgaac
     1621 gctcatccgt gccgggcagg ctgaccggct gccttggcgg tctaggcgcg ctccgagagg
     1681 gcctgacact ccacgcagcg gctggtctgc ggctgtgcca gcatgcgacg cggatcgatt
     1741 tcagcgccgc agtcgacgca tgtcccgtag cttccgtcgg ccatgcgctg acgtgccagg
     1801 cggatttcgc gcaactcggc caagtcgcgc tccgtttccg cgtcggcgac gacggcctgg
     1861 gcgtcgatgg cggcgtcgtc cttggcgtcg ctgacttcgc ccggagggtg tccctcggat
     1921 cggtggcgca ctgcacggat ttcctgcctg agctccgctt cacgcgaatc gaggcggcgt
     1981 tcaagggcct tcagttggtc gtgaggaagc atggcggctc gtgggttgtg ggacgaagtc
     2041 gtcgaggtgg cccggtcagc ctagcgatcg accaccggcg cgacttgcgc tggatcaggg
     2101 atcgacgtcg gcgacggggc gggcgaagtt gcggcggatc aaggcttcat cgagtgactc
     2161 gtgcccaatg ccggaaagcg aagcccatgc ccattccttt cgatccttgg cggtcggtca
     2221 ccattgccgc cgatgtcgcg attgcgtcgc gcgcgcgtgc cgaggatctg gctgagcgga
     2281 gcgagcgacg cctccaggcc gtgctcgagg cggccgtcca cggctctccg atgtaccgcc
     2341 acctgctcgg accgcatcga ggccccttgc gcctgagcga catgccggtc gttcgcaagg
     2401 ccgagctgat gcgctcattc gaccgctggt gctgcgaccc ggccctccgg ctggagccgt
     2461 tgcggcactt cgtggccgat ccgggcaaca tcggccggcc gtttctcgac cgctacatcg
     2521 tctgggagag ctccggcagc agcggccagc cggcgctctt cgtccaggac gccgctgcga
     2581 tggcggtgta cgacgcgctc gaagcgtttc gcaagcccga gctgcggtcg atgcggcggc
     2641 tgctggatcc cctggggatg agcgagcgca tcgtgttcgt cggggcgatc gggggtcact
     2701 tcgcgagcac cgtgtcgatc gagcgattgc gccggctgaa tcctctcctg tcgcagtcga
     2761 tctccagcgt ctcgttcctg cagccgatcg agctcgtgac tgcgcagctc gatgcctgca
     2821 agcccaccgt cgtcgcgacc tacccgagcg ctgcggtcct cctggcggga gaatttcgcg
     2881 ccggtcggtt gcactgcgcg cccgcggagg tctggaccgg cggcgagacg ttgacgccgg
     2941 ggatgcgacg tttcgttcaa gaggcgttcg gctgtcccgt cgtcgacagc tatggggcct
     3001 ccgaattcct gacgctcgcc tgcgcgtgcc ggcacggtgc cttgcatctg aacagcgact
     3061 gggccattct cgagccggtc gacgagcgcg gcgccgccgt cccgccggga acggccggcg
     3121 cgacgacgct gctcacgaat ctcgccaacc acgtccagcc gctcatccgg tacgacttgg
     3181 gcgaccgcgt caccatgcgc gcgcaggcgt gtccctgcgg ttcgcacctg ccggtgatcg
     3241 aagtcaacgg tcgct
//
LOCUS       DASVHM010000715         5910 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_701809, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000715 DASVHM010000000
VERSION     DASVHM010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5910
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_701809"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..333
                     /locus_tag="VF308_13165"
     CDS             <1..333
                     /locus_tag="VF308_13165"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEX7437653.1"
                     /translation="FYAASVLAAALTQLIVTALMGTSYPTVGASGGLFGLLLAFAIMF
                     PNRIILLFFVLPMKARYLVALYGLLELYQGVWVMNSGVAHFAHLGGMVGGYLMIRYWR
                     GQAPFGRR"
     gene            370..1398
                     /locus_tag="VF308_13170"
     CDS             370..1398
                     /locus_tag="VF308_13170"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1C family serine protease"
                     /protein_id="HEX7437654.1"
                     /translation="MNKVSLSWVFALTVFALAAQAAETAQPDAAGQELATRTRALARA
                     HAAVVGVHATAVEEAGSVATLGSEREGSGVVIDADGLVLTIGYLILEADHVDLALEGR
                     HLVPARVVAYDLATGFGLLQALAPLHTEPAPLGDSSAFSSNEPLLIASGGDNAALSLA
                     RMVSRRPFSGYWEYHIEGALFTAPARTDHSGAALFNADGELLGIGSLVVSHALGPGQP
                     PLQGNMFVPIDLLKPILGEMRERGASRSSRRAWLGLNCVEHEGQIRVVRLSASGPAEE
                     AGLQPGDRIVAIDGVTVNDLESFYKTLWQRDAEREVTLEIRRGALAQTLKVQARDRMT
                     TLRRPEGV"
     gene            complement(1487..2386)
                     /locus_tag="VF308_13175"
     CDS             complement(1487..2386)
                     /locus_tag="VF308_13175"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7437655.1"
                     /translation="MKILLLTQPMPAAPFAAAIGALAPGHELVEYRKEIDASVLADID
                     VVLGWQMPRGVASRMPKLRWVCAVAAGVEKLLVEDLAGHVPVSRIVDADQAEGIAQFV
                     VLMALRHARALPMYEALQRERQWRRNPVAAVRSRVGVLGTGAMGGVVAKLLGVVGFEV
                     RGWSRGSAEPLEAALGASDIVVCALPLTAQTQGLLDARAFAAMPEGSYLINVARGGHV
                     VEADLIAAVRSGRLAGAALDVQRNEPMRPDDPLWEVPGITITPHIAAQPSTATIAAQF
                     VEGLRCLERGAAPPQTIDRARGY"
     gene            complement(2383..3291)
                     /locus_tag="VF308_13180"
     CDS             complement(2383..3291)
                     /locus_tag="VF308_13180"
                     /EC_number="1.1.1.290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7437656.1"
                     /translation="MPMPFLSRPTPLKRPTLLIVGCGDVGMRVAGLLRGRWRVLALTS
                     SGARVPALRAAGVLPLVGDLDKPATLARLADLADAVLHLAPPPVTGSTDSRTANLLRA
                     LARGVRVRRIVYASTSGVYGDCAGAKIDETRALRPASDRARRRVDAEARLRWHGRAFG
                     VRVTLLRIPGIYASDRPGGHPRERLARGTPVLVASDDVYTNHIHADDLARACVAALHR
                     GLPQRAVHVSDESDIKMGDYFDLAADLCGLARPKRIPRSQAEQIFSPMLLSFMGESRR
                     LVNTRLVRELRLRLRYPRVHDGLLAP"
     gene            3332..4369
                     /locus_tag="VF308_13185"
     CDS             3332..4369
                     /locus_tag="VF308_13185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010459263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-6-deoxy-delta-3,4-glucoseen reductase"
                     /protein_id="HEX7437657.1"
                     /translation="MPFTVTLRPSGRSFSVERDEPILSAAIRQGIGLPYGCKDGACGS
                     CKCRLLEGRVIHGAHQAKALSAEEETAGLTLTCQAAPQTDVVLEVRIVPGAGEFAIRK
                     MPCRVIRIDKPAPDVAILHLQLPANDPLRYHAGQYVEFILQGGARRSYSMANAPHTQG
                     DKPAIELHLRHLVGGLFTDHVFEAMKEKEILRIEGPFGSFFLREDSEKPMVLLASGTG
                     LAPIKAIIEHLRWKRSERPAVLYWGCRTRADLYLHEWAEAAAAEMPSLSYIPVLSEPR
                     DDDRWTGRTGFVHHAVMQDLADLSAHQVYACGAPVMVDSAERDFVARCGLPKEEFYAD
                     AFTSEADKHGP"
     gene            4390..5365
                     /locus_tag="VF308_13190"
                     /pseudo
     CDS             4390..5365
                     /locus_tag="VF308_13190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012839449.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
     gene            5514..5783
                     /locus_tag="VF308_13195"
     CDS             5514..5783
                     /locus_tag="VF308_13195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HEX7437658.1"
                     /translation="MTLVQTELQREVAALLVEALNLEIAPESIDPQAPLYGEGLGLDS
                     IDILEVALVVSQRYGFQLRSDDEDNVRIFASLASLAEHIGSHRQG"
BASE COUNT          938 a         2139 c         1980 g          853 t
ORIGIN      
        1 ttctacgccg cgagcgtgct ggcggcggct ctcacccagc tgatcgtcac cgcgttgatg
       61 ggcacctcct acccgaccgt cggcgcttcg ggcggcctct tcggcctgct gctcgcgttc
      121 gcgatcatgt ttccgaaccg catcatcctg ctcttcttcg tgctcccgat gaaggcgcgc
      181 tacctggtgg cgctgtacgg gttgctcgag ctctaccagg gcgtctgggt gatgaattcc
      241 ggggtcgcgc atttcgccca cctcggcggc atggtcggcg gatacctgat gatccgctac
      301 tggcgcgggc aggcgccgtt cgggcggcgc tagcgtttcc aggcaagagg cagcgcagac
      361 gaggcggtca tgaacaaggt ctcactcagc tgggtcttcg cgctgaccgt cttcgcgctc
      421 gccgcgcagg ccgccgagac ggcgcagccc gatgccgctg gccaggagct tgccacgcgc
      481 acccgcgccc tggcgcgcgc ccacgcggcg gtggtcggcg tccacgccac cgccgtcgag
      541 gaggccggct cggtcgcgac gctcggcagc gagcgcgaag gctccggcgt cgtcatcgac
      601 gccgacggac tcgtgctgac gatcggctac ctgatcctcg aagctgacca tgtcgacctg
      661 gcgctcgaag gccggcatct cgtcccggcc cgcgtcgtcg catacgacct cgcgaccgga
      721 ttcggcctac tgcaggcgct cgcgcccctt cacaccgaac ccgcgccgct cggcgattcg
      781 agcgcgtttt cgagcaacga accgctcctg atcgcgagcg gcggcgacaa cgcagcgctc
      841 agcctggccc ggatggtgtc gcgacgcccg ttctcgggct attgggaata tcacatcgag
      901 ggcgccctct tcaccgcacc ggcccgcacc gatcacagcg gcgccgcgct tttcaatgcc
      961 gacggcgaac tgctcggcat cggctcgctc gtcgtcagcc acgcgctcgg ccccgggcag
     1021 ccgccgctgc agggcaacat gttcgtgccg atcgacctgc tcaagccgat cctcggcgaa
     1081 atgcgcgagc gcggcgcctc gcgcagcagc cgccgggcct ggctcggcct caactgcgtc
     1141 gaacacgaag ggcagatccg ggtcgtgcgc ctgagcgcat cgggcccggc cgaagaggcc
     1201 ggattgcaac cgggcgaccg catcgtcgcc atcgacggcg tgacggtcaa cgacctcgaa
     1261 tccttttaca agacgctctg gcagcgtgac gcggaacgcg aggtcacgct cgagatccgc
     1321 cgcggcgcac tcgcgcagac cttgaaggtg caagcgcgcg accggatgac gacgctgcgg
     1381 cgtccggaag gggtctagcc accgccggag ccagctcggg ggagcccgcc gggccgagtc
     1441 ccggcgggct ttagttagcg agcgtcgaac aaaggttcga cgactctcag tacccgcggg
     1501 ctcgatcgat cgtctgcggc ggcgcagccc cgcgctcgag gcagcgcagc ccttccacga
     1561 actgcgcggc aatcgtcgcc gtcgagggtt gcgccgcgat gtgcggcgtg atcgtgatgc
     1621 cgggtacctc ccagagcgga tcgtcgggcc gcatcggctc gttgcgctga acgtcgagag
     1681 cagcgccggc gagccggccc gagcgcaccg cagcgatcag gtcggcctcg accacgtgac
     1741 cgccgcgggc cacgttgatc aagtagctgc cttcgggcat cgcggcgaag gcacgggcat
     1801 cgagcaggcc ctgcgtctgc gcggtcaggg ggagcgcgca gacgacgatg tcgctcgcgc
     1861 cgagcgccgc ctcgagcggc tcggcggacc cgcggctcca gccgcggacc tcgaaaccca
     1921 cgaccccgag cagcttggcc accacgccac ccatcgcgcc ggtgccgagc accccgaccc
     1981 ggctgcgcac cgcggcgacc gggttgcgcc gccattgccg ttcgcgctgc agcgcctcgt
     2041 acatcggcag cgcgcgcgca tggcgcagtg ccatcagcac cacgaactgg gcgatgcctt
     2101 cggcctgatc ggcatcgacg atgcgcgaca ccggcacgtg cccggccagg tcttcgacca
     2161 gcagcttctc gaccccggcg gcgacggcgc agacccagcg cagcttgggc atgcggctcg
     2221 cgacgccgcg cggcatctgc cagccgagca cgacgtcgat gtcggcgagc accgacgcgt
     2281 cgatctcctt gcggtattcg accagttcgt gcccgggtgc gagcgcgccg atcgccgcgg
     2341 cgaatggcgc ggccggcatc ggctgggtca ggaggaggat cttcatggtg cgagcagtcc
     2401 gtcgtggacc cgagggtagc gcaggcgcag ccgcaactcg cgcacgaggc gggtgttgac
     2461 aagccggcgc gattcaccca tgaagctgag gagcatcggc gagaaaatct gttcggcctg
     2521 cgaccgggga atgcgcttcg gccgcgccag cccgcacaga tcggcggcga gatcgaagta
     2581 gtcgcccatc ttgatgtcgc tctcgtcgct gacatgcacc gcgcgctgcg gcaggccgcg
     2641 atgcagcgcg gcgacgcagg cgcgcgccag gtcgtcggca tggatgtggt tggtgtagac
     2701 gtcgtcgctc gcgacgagca ccggcgtgcc gcgcgccagg cgctcgcgcg gatggccgcc
     2761 cgggcggtcg ctcgcgtaga tgcccgggat gcgtagcagg gtcacgcgca cgccgaaggc
     2821 gcgcccatgc caacgcaggc gcgcctcggc gtctacgcgg cgccgggccc ggtcgctggc
     2881 cggccgcaac gcccgcgtct cgtcgatctt cgcgcccgcg caatcgccat agaccccgct
     2941 cgtgctggcg taaacgatgc gccgcacacg cacgccgcgc gccagcgcgc gcagcaggtt
     3001 cgccgtgcgc gaatcggtgc tgccggtcac gggcggcggc gcgaggtgca gcaccgcgtc
     3061 ggcgaggtcg gcgagccggg ccagggtggc cggcttgtcg agatcgccga cgagcggcag
     3121 cacgccggcc gcacgcaagg ccggcacacg cgcgccgctc gaggtcagtg cgagcacgcg
     3181 ccagcgccct cgcagcagcc cggcgacgcg catgccgaca tcgccgcaac cgacgatcag
     3241 gagcgtcggt cttttcaggg gagtcggtct cgacaggaag ggcatcggca tgcggtcaga
     3301 atcgcgggtc agtttaagag cttcccccgc aatgcccttc accgtcaccc tgcgaccgag
     3361 cgggcgcagc tttagcgtcg agcgcgacga gccgatcctc agcgccgcga tccgccaggg
     3421 catcggcctg ccctacggct gtaaggacgg cgcctgcggc tcctgcaaat gccggctgct
     3481 cgagggccgg gtgatccacg gcgcgcacca ggccaaggcc ttgagcgccg aagaagagac
     3541 tgcaggcctc accctgacct gccaggcggc cccgcagacc gacgtcgtgc tcgaggtgcg
     3601 catcgtcccc ggcgccgggg agttcgcgat ccgcaagatg ccgtgtcgcg tcatccgcat
     3661 cgacaagccc gcgcccgacg tcgcgatcct gcacctgcaa ctgccggcca acgacccgct
     3721 gcgctatcac gccggccagt acgtcgagtt catcctgcag ggtggggcgc ggcgcagcta
     3781 ctcgatggcg aacgcgccgc acacccaggg cgacaagcca gcgatcgaac tgcacctgcg
     3841 ccacctggtg ggcggcctct tcaccgacca tgtgttcgag gcgatgaagg aaaaggagat
     3901 cctgcgcatc gaaggcccgt tcggcagctt cttcctgcgc gaagactccg aaaagccgat
     3961 ggtcctgctc gcatccggga ccggcctcgc gccgatcaag gccatcatcg agcacctgcg
     4021 ctggaagcgc agcgagcgcc ccgctgtcct gtactggggc tgtcgcacgc gcgcggatct
     4081 ctacctgcac gaatgggccg aagcggcggc ggcggagatg ccaagcctga gctacatccc
     4141 ggtgctctcg gaaccgcggg acgacgaccg ctggaccggc cggaccgggt tcgtgcacca
     4201 cgccgtcatg caggacctgg ccgacctttc cgcgcaccag gtctatgcct gcggcgcgcc
     4261 ggtcatggtc gactcggccg agcgcgattt cgtcgcgcgc tgcggcctgc ccaaggaaga
     4321 gttctacgcg gacgcgttca cctccgaagc ggataagcac ggcccctaga gccagccgag
     4381 gtcaatccca tgcaacgacg ccacgcactc ggcgccctcg ccgccaccct gtcgtgtgcc
     4441 gcgttggccc agagccggcc gatccggctg atcgttccct atccgcccgg cggcccgctc
     4501 gacatcgtcg cgcgcgcgct cgccgacaag gtcaaggaca gcctcggcgt cgtgatcgtc
     4561 gaaaaccggc cgggggcggg cggcaacctc ggcgccgacg cggtggccaa ggcggtgccc
     4621 gacggcaaca ccatcgtgat gggcgcagtg gccacgcacg cgatcaatcc gtggctctat
     4681 gccaagatcc cctacgaccc gatccgcgac ttcacgccga tcacgcgggt cgcgcaggtg
     4741 cccaacgtcc tcgtgatgaa cgccgagacc gcggcgcggc tgcacatcgc caacgtcgcc
     4801 gacctcgtcg cctatgcgaa gaagaacccc ggcaagctca actacggctc cggcggcaac
     4861 ggcagcgccg gccacctcgc cggcgagatg ttcaagcagc aggccggcgt cttcatggtg
     4921 cacatcccct acgcgggcgg caacccggct cagctggcgc tgctgtcggg acaggtcgat
     4981 ctgaacttcg acaacctcgc cgcggcctcg gccaacatca agtccggcaa gctgcgcgcg
     5041 atcgcgatga cgaccgcgcg gcgctccaac gcaatgcccg agattgcgac catcgccgag
     5101 agtagccggg cgctcggcct ggaccggttc gacatcgaca cctggttcgg cctcttcggc
     5161 ccggcgcaca tgcccccccg acgtgaccca gcgcctgaac aaggcgttcg tcgatgcgct
     5221 caacacgccc gacctgaagg tccggctcgc gacgctgctg gccgagcccg caccgatggc
     5281 gcccgacgcc ttcgccgcgt tcgtgaaggc ggaactggcg aaatacgaac acgtcgtgaa
     5341 gatgaccggc gcgaaggtcg aatgagcgct tgcccggggt cggccacccc gggtgctttg
     5401 atagactctc atgcggttcg atcggcgccc tgcagccccg ttacgagcag tgatggtcgg
     5461 caccgcttgg cgctcaagca accggtcacg gcgcaacccc tcttcactca ccgatgactc
     5521 tcgtccaaac cgaattgcag cgcgaggttg ccgcgctcct cgtcgaagcc ctcaacctcg
     5581 agatcgcccc cgaatcgata gacccgcagg cgccgctcta cggggaaggc ctcggcctcg
     5641 attcgatcga catcctcgaa gtggcgctgg tcgtgtcgca gcgctacggc ttccagctgc
     5701 gttccgacga cgaggacaac gtccgcatct tcgcgtcgct ggccagtctc gccgagcata
     5761 tcggcagcca ccggcagggc taggacgtgg gcacgaattc agcgtgagca ggccctgacc
     5821 atgacgctgc ggccacgcta cgtggcggtg ggcgtggccg gcctcgcctg ggtgatcgca
     5881 tcgcaatggc tgatgacacg caccccaccg
//
LOCUS       DASVHM010000716         2182 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_195295, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000716 DASVHM010000000
VERSION     DASVHM010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195295"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..152
                     /locus_tag="VF308_13200"
     CDS             <1..152
                     /locus_tag="VF308_13200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEX7437659.1"
                     /translation="ALPSASNVSVLAEIYGADNGRITRIIMASTVLAFASFSVLAWAF
                     GVGAT"
     gene            220..1092
                     /locus_tag="VF308_13205"
     CDS             220..1092
                     /locus_tag="VF308_13205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013900592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX7437660.1"
                     /translation="MKLTAAQHEQFDRDGYLFFAGLFGTDETRTLIDVVPQLYSRRAD
                     YNVREKGKDAVRTNFAAHLVSEPFAKLARHPRMVEPVQDLLGEALYMHQFKINGKMAF
                     EGDVWQWHQDYGTWRNDDLMPTERAMNVAIFLDDVSEFNGPLMFIPGSHKRGVIDARH
                     DLTTTSYPLWTIDNALIAQLVERAGGRQGGIVSPKGPAGSMILFHSCLVHASGSNLSP
                     YNRVSVYLSLCAVSNHIRRFKRPEYIAHRDFTPIECLPDDCLLKDYPVELPWKNGMPP
                     SALVTSTAEFQLAA"
     gene            1094..>2182
                     /locus_tag="VF308_13210"
     CDS             1094..>2182
                     /locus_tag="VF308_13210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX7437661.1"
                     /translation="MSLHAQLQRRAAAKRPIRIGLIGAGKFGSMYLAQIPRTPGVQLI
                     GIADLAPDAARANLARVGWTDERTRAASLDEALRTGATHIGDDWQALVGHSAIDIVVE
                     CTGNPIAAVEHCLRAFTHGKHVVNVTVEADAFCGPLLARRAAEAGVIYSLAFGDQPAL
                     ICDLVDWARTCGFPVVAAGRGHKWLPHFCESTPETVWGHYGLTPEQAARGGLNPKMFN
                     SFLDGSKPSIESTAVANATGLTVPSNGLLYPPASIADIPRVTRPIAEGGVLERKGMVE
                     VISSLEAGGQPIEYDIRMGVWVTVEAETDYIKNCFEEYNAHTDPSGRYFTLYKRWHLI
                     GLEVGVSVASVALRGEATGSAVCWNADVV"
BASE COUNT          374 a          778 c          701 g          329 t
ORIGIN      
        1 ccgcgctgcc gagcgcgagc aacgtctcgg tgctggccga gatctacggc gccgacaacg
       61 gccgcatcac ccgcatcatc atggcctcga cggtgctggc gttcgcgagc ttctcggtcc
      121 tggcgtgggc cttcggggtc ggcgcgacct gaggcagcgc cccggcgcgc attgccggcc
      181 actctccgac atactggagg cctcggcgaa aggcatccca tgaaactgac cgcagcccaa
      241 cacgaacagt tcgaccgcga cggctacctg ttctttgcgg gactcttcgg cacggacgaa
      301 acgcgcaccc tgatcgacgt ggtgccgcag ctctacagcc ggcgcgccga ctacaacgtg
      361 cgcgaaaagg gcaaggacgc ggtgcggacc aatttcgccg cccacctggt cagcgagccg
      421 ttcgccaagc tcgcgcgcca tccgcgcatg gtcgagccgg tgcaggatct gctcggcgag
      481 gcgctctaca tgcaccagtt caagatcaac ggcaagatgg ccttcgaagg cgacgtctgg
      541 cagtggcacc aggactacgg cacctggcgc aacgacgacc tgatgccgac cgaacgcgcc
      601 atgaacgtcg cgatcttcct cgacgacgtg agcgaattca acggcccgct gatgttcatc
      661 ccgggcagcc acaagcgcgg cgtgatcgac gccaggcacg acctgacgac gacgagctat
      721 ccgctctgga ccatcgacaa cgcgctgatc gcgcagctcg tcgagcgcgc cggcggaagg
      781 cagggtggca tcgtctcgcc gaagggcccg gccggctcga tgatcctctt ccacagctgc
      841 ctggtgcacg cctccggctc gaacctctcg ccgtacaacc gggtcagcgt ctacctgagc
      901 ctgtgcgcgg tcagcaatca catccgccgc ttcaagcgcc ccgagtacat cgcgcaccgc
      961 gacttcacgc cgatcgagtg cctgcccgac gattgcctgc tgaaggacta tccggtcgag
     1021 ctgccctgga agaacggcat gcccccgagc gccctggtca cctccaccgc cgaattccaa
     1081 ctggccgcct gacatgagcc tgcacgcgca actgcagcgg cgcgctgccg cgaagcggcc
     1141 gattcgcatc ggtctgatcg gcgccggcaa gttcggctcg atgtacctcg cgcagattcc
     1201 gcgcaccccg ggcgtgcagc tgatcggcat cgccgacctc gcgcccgacg ccgcgcgcgc
     1261 taacctcgcg cgggtcgggt ggacggacga gcgcacgcgc gccgcgagcc tcgacgaagc
     1321 actgcgcacc ggcgcgaccc acatcggcga cgactggcag gcgctggtcg gccattcggc
     1381 gatcgacatc gtcgtcgaat gcaccggcaa tcccatcgcc gcggtcgagc attgcctgcg
     1441 cgccttcacg cacggcaagc acgtcgtcaa cgtcacggtc gaggccgacg cgttctgcgg
     1501 cccgttgctc gcgcggcgcg cggccgaggc cggtgtgatc tattcgctcg ccttcggcga
     1561 ccagccggcg ctcatctgcg acctggtcga ctgggcccgc acctgcggct ttccggtcgt
     1621 cgcggcgggg cgcggccaca agtggctgcc gcacttttgc gaatcgacgc cggaaacggt
     1681 gtggggccac tacggcctca cgccagagca ggcggcgcgc ggagggttga acccgaagat
     1741 gttcaacagc tttctcgacg gctccaagcc ctcgatcgaa tcgaccgccg tcgccaacgc
     1801 gaccggcctc acggtgccga gcaacggcct gctgtatccg ccggccagca tcgccgacat
     1861 ccctcgcgtc acgcggccga tcgccgaggg cggcgtgctg gaaagaaagg gcatggtcga
     1921 ggtgatctcg tcgctcgagg ccggcggcca gccgatcgaa tacgacatcc gcatgggcgt
     1981 gtgggtgacg gtcgaggccg agaccgacta catcaagaac tgcttcgagg aatacaacgc
     2041 ccacaccgac ccgagcgggc gctacttcac actctacaag cgctggcacc tgatcggcct
     2101 cgaagtcggc gtgtcggtgg cgagcgtcgc gctgcgcggc gaggcgaccg gctctgctgt
     2161 gtgctggaac gccgacgttg tc
//
LOCUS       DASVHM010000717         4990 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_774506, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000717 DASVHM010000000
VERSION     DASVHM010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4990
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_774506"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..249)
                     /locus_tag="VF308_13215"
     CDS             complement(<1..249)
                     /locus_tag="VF308_13215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEX7437662.1"
                     /translation="MATMSMIQALRSAMDVMLERDDNVVIYGQDVGYFGGVFRCTEGL
                     QAKYGSSRVFDAPISEGGIVGSAIGMAAYGLRPVVEVQF"
     gene            complement(252..1484)
                     /locus_tag="VF308_13220"
     CDS             complement(252..1484)
                     /locus_tag="VF308_13220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015603049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate dehydrogenase
                     (2-methylpropanoyl-transferring) subunit alpha"
                     /protein_id="HEX7437663.1"
                     /translation="MSQGPLRLHVPEPTGRPGHGTDFSYLHLSRAGEVRRPPVDVAPI
                     DAGDLAYTLVRVLDDDGQAVGPWAPRIDADRLRRGMRAMMKTRAFDARMLISQRQKKI
                     SFYMQCLGEEAIAVAHALALQPGDMCFPTYRQQGLLLARDDVSMVELISQLMSNERDP
                     LKGRQLPVMYSYKRAGFFTISGNLATQFIQAVGWGMASAIKGDTKIASAWIGDGATAE
                     SDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGEATTFAAHGIGCGIASLRVDG
                     NDFLAVIAASQWAAERARSNLGPTLIEWVTYRAGAHSTSDDPSRYRPGDDWQKFPLGD
                     PIARLKRHLIGLGAWSEQEHDATQKELDAQVGAALKEAAQYGSLLDGHLPPLATMFED
                     VYKDMPPHLHEQLRQARG"
     gene            complement(1520..2110)
                     /locus_tag="VF308_13225"
     CDS             complement(1520..2110)
                     /locus_tag="VF308_13225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX7437664.1"
                     /translation="MNLDAALPTFRLERGMAIAQANPSNNSSVTLDSPALEVMTDLTQ
                     VKAATTQPSTTLRQAEQMMIYQGVRMLFVVTDMPSIEGLITATDLRGDKQMRVVHERG
                     LRYDEVCVADVMMELAMLDAIDYNRVKTAAVGNAIATLKGLGRNHLLVVESATATTPR
                     RVRGVISRSQIERQLGTAIDIAPIASSFAEIERVLG"
     gene            complement(2235..3689)
                     /locus_tag="VF308_13230"
     CDS             complement(2235..3689)
                     /locus_tag="VF308_13230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018441100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HEX7437665.1"
                     /translation="MEIRNPSPDLYNEDLAPAKERKWGAFSIFNVWTSDVHSLWGYYL
                     AASLFLLCGSFVNFVVAIGLGSLIIFFLMNLVGYAGVKTGVPYPVLARASFGVWGANL
                     PALVRAVVACFWYGAQTAAASGAIVALLTRTDSIMEFHKSTHFLGHSGLEVICFVIVW
                     ALQLLIIQNGMETVRRFQDWAGPAVWVAMLVLAVGLVIKAGGFSFDHGIPQEVLLAKT
                     KDAGVTGAPGSFWALMAVGATWVTYFAALYLNFCDFSRYAPDKATVRKGNLWGLPINL
                     VLFSLVAGVTTIAAFKVYGEVLLHPEQISAKFDSWFLALLAAVTFAVATLGINVVANF
                     VSPAFDFSNVFPRKISFKKGGYIAAGIALVLYPFAPWEGNAASFVGAIGATMGPLLGI
                     ILVDYYLVAKGEIQVEALYDENGAYRYQGGWNVSALIAAAIGALFSSILPNFTNVLPP
                     WWGVYGWFFGVAIGGLAYWLLSMLMPRTAPMATA"
     gene            complement(3887..>4990)
                     /locus_tag="VF308_13235"
     CDS             complement(3887..>4990)
                     /locus_tag="VF308_13235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011799906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7437666.1"
                     /translation="WGWRVPFLLSFILLGISVWIRLSMNESPAFKKMKEEGKTSKAPL
                     TESFTRWPNLKIVLLALFGLTMGQGVVWYTGQFYALFFLTGALKVDNATANILIAASL
                     VIGTPFFIVFGALSDRIGRKPIIMAGCILAALTYFPLFHALAEAGNPELAAAQAKNRV
                     VVTADPERCSFQFNPTGVAKFTSSCDIAKQALAGRSVSYENEAAPAGSVAQVKIGDKV
                     IPGFESKGLAPAEVKAKDDAFKKEIGAAINAAGYPAKAKPIPFMGSQWWTLVAILTVM
                     VIYVTMVYGPIAAALVELFPTRIRYTSMSLPYHIGNGWFGGLLPATALAIVAQTGNMY
                     NGLWYPIIFASITFVIGLLFLRETKDVDIYRYD"
BASE COUNT          884 a         1648 c         1659 g          799 t
ORIGIN      
        1 gaactgcacc tcgaccaccg ggcgcaggcc gtaggccgcc atgccgatcg ccgaaccgac
       61 gatgccgccc tcggagatcg gcgcgtcgaa cacgcgggaa gagccgtact tggcctgcag
      121 cccttcggtg cagcggaaca ccccgccgaa gtagcccaca tcctggccgt agatcacgac
      181 gttgtcgtca cgctcgagca tcacgtccat cgcggagcgc agggcctgga tcatgctcat
      241 cgtggccatg gtcacccgcg cgcctggcgc agctgttcat gcaggtgcgg cggcatgtcc
      301 ttgtagacgt cttcgaacat ggtcgccaac ggcgggagat ggccgtcgag cagcgagccg
      361 tattgcgcgg cctccttcag cgctgcgccc acttgcgcgt cgagctcctt ctgcgtcgcg
      421 tcgtgctcct gctcggacca cgcaccgagg ccgatcagat ggcgcttcag gcgcgcgatc
      481 gggtcgccga gcgggaactt ctgccaatcg tcgcccgggc gatagcgcga cgggtcgtcc
      541 gaggtcgaat gcgcaccggc gcggtacgtg acccattcga tcagggtcgg cccgaggttg
      601 ctgcgggcgc gctccgcggc ccattgcgag gccgcgatca cggcgaggaa gtcgttgccg
      661 tcgacgcgca gcgaagcgat gccgcagccg atgccgtgcg cggcgaaggt cgtggcctcg
      721 ccgccggcga tcgcctggaa ggtcgagatc gcccattggt tgttgacgac gttgaggatg
      781 accggcgcgc ggtagacatg cgcgaaggtc agtgcggtgt ggaagtcgga ctcggcggtc
      841 gcgccgtcgc cgatccaggc cgacgcgatc ttcgtgtcgc ccttgatcgc cgaagccatg
      901 ccccagccca cggcctggat gaactgagtc gccaggttgc ccgagatcgt gaagaagccg
      961 gcgcgcttgt acgaatacat caccggcagc tggcggccct tgagcggatc gcgttcgttg
     1021 gacatcagct ggctgatcag ctcgaccatc gaaacatcgt cgcgcgccag cagcaggccc
     1081 tgctggcggt aggtcggaaa gcacatgtcg ccgggctgca gcgccagcgc atgcgcgacc
     1141 gcgatcgcct cctcgcccag gcactgcatg tagaacgaga tcttcttctg gcgctgcgag
     1201 atcagcatgc gcgcatcgaa cgcgcgcgtc ttcatcatgg cgcgcatgcc gcggcgcagg
     1261 cgatccgcgt cgatcctggg ggcccagggt ccgacggcct ggccgtcgtc gtcgagcaca
     1321 cgcacgagtg tgtaggccag gtcgccggca tcgatcggcg cgacatcgac cggcggccgc
     1381 ctgacctcgc cggcgcgcga caggtgcagg tacgagaagt cggtgccgtg acccgggcgc
     1441 ccggtcggct cgggcacatg cagacgaaga ggcccctggc tcatccgcgt tcctccatgc
     1501 ccgtcacggc cgcggactct cagcccagta ctcgttcgat ttccgcgaag ctgctggcga
     1561 tgggggcgat gtcgatggct gtgcccagct gccgttcgat ctgggatcgc gagatcactc
     1621 ctcgcacccg gcgcggcgtc gttgccgtcg cgctttccac gacgagcaag tggttccggc
     1681 caagcccttt gagcgttgcg atcgcgttgc cgactgccgc agtcttcacg cggttgtagt
     1741 cgatcgcatc gagcatcgcc agctccatca tcacatcggc aacgcacact tcgtcatagc
     1801 gcaggccgcg ctcgtgaacg acgcgcatct gcttgtcgcc gcgcaagtcc gtcgccgtga
     1861 tgagaccttc gatggacggc atgtcggtga cgacgaacag catgcgcacg ccctgataga
     1921 tcatcatctg ctccgcttgg cgcagcgtag tggagggctg ggtcgtcgcc gccttgacct
     1981 gcgtcaagtc ggtcatgacc tcgagcgccg gcgagtccag cgtgaccgac gagttgttcg
     2041 atgggttcgc ctgggcgatg gccattccgc gttcgaggcg aaatgtcggc aaggcagcat
     2101 caaggttcat cctggccccc gaagagagtg caacgccggt cgaggcgctt gctgcacacg
     2161 ttacgcccaa agcgccttgt ccgccaggcg accccgacga catcgacgag tggcgacggg
     2221 aaattcctct tggcctaggc cgttgccatc ggcgcagtcc gcggcatcag catcgagagc
     2281 agccagtagg cgagcccgcc gatcgcgacg ccgaagaacc agccgtagac gccccaccac
     2341 ggcggcagca cgttcgtgaa gttcggcagg atgctggaaa acagcgcacc gatcgccgcg
     2401 gcgatcaacg cgctgacgtt ccagccaccc tggtaccgat aggcgccgtt ctcgtcgtag
     2461 agcgcctcga cctggatctc gcccttggcg acgaggtagt agtcgaccag gatgatgccg
     2521 agcagagggc ccatcgtcgc gccgatcgcg ccgacgaacg aagccgcgtt gccctcccag
     2581 ggtgcgaacg gatagagcac cagcgcgatg ccggcggcga tgtagccgcc cttcttgaag
     2641 ctgatcttgc gcgggaacac gttcgagaag tcgaaggccg gcgagacgaa attcgcgacc
     2701 acgttgatgc cgagcgtcgc gaccgcgaac gtcaccgcgg cgagcagcgc gaggaaccag
     2761 ctgtcgaact tggccgagat ctgctccggg tgcagcagca cctcgccgta gaccttgaag
     2821 gccgcgatcg tcgtcacacc ggccacgagc gagaacagca ccaggttgat cggcaggccc
     2881 cagaggttgc ccttgcgcac ggtcgccttg tcgggcgcat agcgtgagaa atcgcagaag
     2941 ttgagataga gcgcggcgaa gtaggtcacc caggtcgcgc cgaccgccat cagcgcccag
     3001 aacgacccgg gggcgccggt cacgccggcg tccttggtct tcgcgagcag cacctcctgc
     3061 gggatgccgt ggtcgaacga gaacccgccg gccttgatga cgaggccgac cgcgagcacg
     3121 agcatcgcga cccagacggc ggggccggcc cagtcctgga acctgcgcac cgtctccatc
     3181 ccgttctgga tgatgagcag ctgcagcgcc cagacgatca cgaagcagat cacctcgagg
     3241 cccgaatggc cgaggaagtg cgtcgacttg tggaattcca tgatgctgtc ggtgcgcgtc
     3301 agcagcgcga cgatcgcgcc cgaggccgcc gccgtctgcg cgccgtacca gaagcaggcg
     3361 acgacggcgc gcaccagcgc cggcaggttg gcgccccaga cgccgaacga ggcccgcgcc
     3421 agcaccggat acggaacccc ggtcttcacg ccggcgtagc cgaccaggtt catcaggaag
     3481 aagatgatga gcgagccgag cccgatcgcg acgacgaagt tgacgaagct gccgcacagc
     3541 aggaacaggc tcgcggccag gtagtagccc cacaggctgt gcacgtccga ggtccagacg
     3601 ttgaagatgc tgaaggcgcc ccacttgcgc tccttcgcgg gggcgaggtc ttcgttgtac
     3661 aggtcgggcg acgggttgcg gatctccatg cttctcctcc cggttcgttg aaggcacttt
     3721 cggccccggt gctcaggaat agcgcacggc gccgcgccgc gcctcggggc ttacccgaag
     3781 ccggccggca agaaaaaggc cggcccggtc gcagggaccg gccggcctcg caggcacgcc
     3841 acggacagcg cgaaccggac tcgattcgcg ttgccttgat gcgcgttcag tcgtagcggt
     3901 agatgtcgac gtccttggtc tcccgcagga acagcaagcc gatcacgaag gtgatcgacg
     3961 cgaagatgat cggataccac agcccgttgt acatgttgcc cgtctgcgcg acgatcgcca
     4021 gcgcggttgc cggcaacaga ccgccgaacc agccgttgcc gatgtgatac ggcaggctca
     4081 tcgacgtgta gcggatgcgg gtcgggaaca gttcgaccag cgccgccgcg atcggcccgt
     4141 agaccatcgt cacgtagatc accatcaccg tcaggatcgc gaccagcgtc caccactggc
     4201 tgcccatgaa cgggatcggc ttggccttcg ccggatagcc ggccgcgttg atcgcggcgc
     4261 cgatctcctt cttgaacgca tcgtccttgg ccttgacctc ggcgggagcg aggcccttgc
     4321 tttcgaagcc cgggatgacc ttgtcgccga ttttcacctg cgcgaccgag ccggcgggag
     4381 ccgcttcgtt ttcgtagctc accgagcgcc cggccagcgc ctgcttcgcg atgtcgcacg
     4441 aactcgtgaa cttggcgacg ccggtcggat tgaactggaa cgagcagcgc tcgggatcgg
     4501 ccgtcacgac gacgcggttc ttcgcctgag ccgcggcgag ttccggattg ccggcctcgg
     4561 ccagggcatg gaagagcggg aagtaggtca gcgcggcgag gatgcagccg gccatgatga
     4621 tgggcttcct gccgatgcgg tcggagagcg cgccgaagac gatgaagaac ggcgtgccga
     4681 tcaccagcga cgcggcgatc aggatgttgg cggtcgcgtt gtcgaccttc agtgcgccgg
     4741 tcaggaagaa cagcgcgtag aactggcccg tgtaccaaac gacaccctgg cccatcgtca
     4801 ggccgaagag cgcgagcagc acaatcttca ggttcggcca gcgggtgaac gattcggtca
     4861 gcggcgcctt cgaggtcttg ccctcctcct tcatcttctt gaaggccggt gactcgttca
     4921 tcgacaggcg gatccagacg ctgatgccga gcaggatgaa cgacagcagg aacggcacgc
     4981 gccagcccca
//
LOCUS       DASVHM010000718         7618 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1205162, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000718 DASVHM010000000
VERSION     DASVHM010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7618
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1205162"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..589)
                     /locus_tag="VF308_13240"
     CDS             complement(<1..589)
                     /locus_tag="VF308_13240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017233317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7437667.1"
                     /translation="MISPRLRHVQCLDGRGLHRMAYWEWGDPANRRVLVCVHGLSRQG
                     RDFDTLAGALCDTYRVVCPDVVGRGQSDFLADPMGYQIPAYVADMVTLLARLDAETVH
                     WVGTSMGGLIGLALAALAQSPIGRLVLNDVGPTIEPAALVRIGTYLGMPMEWATLEEA
                     ADYLLSIAKGFGPHSREEWLALTRPMLKPHGSGFKP"
     gene            complement(648..1394)
                     /locus_tag="VF308_13245"
     CDS             complement(648..1394)
                     /locus_tag="VF308_13245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007837012.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEX7437668.1"
                     /translation="MPVPRCVYNLIRISMRRLVTPTLLPALLLALAAPRAFAQAPAPQ
                     GVLNLAASASLEVPRDLLSITFSTTREGSDAAVVQAQLKQALDAALGEAKKAARPGQL
                     DVQTGNFSLTPRYASKGGISGWQGSAELVVEGRDLQAISQLAGRISTLTVGRVGYSLS
                     REVREKAEADVSAQAIARYRAKAADYARLFGYAGYAIREVNVNANEAPPVRPMQLQAR
                     AMSASVDEALPVEAGKAAVTVNVSGTIQLK"
     gene            1496..2230
                     /gene="ompR"
                     /locus_tag="VF308_13250"
     CDS             1496..2230
                     /gene="ompR"
                     /locus_tag="VF308_13250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007852940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator OmpR"
                     /protein_id="HEX7437669.1"
                     /translation="MSTALNARPDRIAVVDDDARIRDLLRRYLTQEGFEVLLAEDAKA
                     LNRLLTRETVNLIVLDLMLPGEDGLSICRRLRAANDLTPIIMLTAKVEDVDRIVGLEV
                     GADDYLPKPFNPRELLARIHAVLRRRPTLEAPGAPALDAQTVTFGPFEFDLALRRLSK
                     DGEQIALTTGEFSMLKALVRHPRQPLSRDKLAQLARGREFEPFDRSLDVQISRLRKMV
                     EPDPTQPRYIQTVWGVGYVFVPDGAA"
     gene            2255..3580
                     /locus_tag="VF308_13255"
     CDS             2255..3580
                     /locus_tag="VF308_13255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX7437670.1"
                     /translation="MPQKRAALSLFWRTFFLLAVLLASGVFAWVQTFRALEFEPRAVQ
                     AAQQIASLVNLTRAALRSSDGINRVALIKGVSKLESVQVAPREPQDTWEPYELDRLSR
                     AIGAELRARLGADTLVAGSMNGVPGLWVGFSIDRDPYWLRIDPARVGPMSWSTITLWV
                     GIALLATVLGSAAIARLINQPLKELSFAATRIGEGEFDSRLDETTMTSEIRQVNMGFN
                     RMARELAKVEQDRAVMLAGISHDLRTPLARLRLEAEMSVKDEEAKSNMAQDIDQLDAI
                     IDKFMDYARPGEVKLVPVNLSAVVEREMGSFRDKSQMKIRSRVGLDTRVLADDTELGR
                     VLQNLFENARRYGRSVDTGVANVSVSHARTGPWVILSVRDHGQGVDPKKLGQLTTPFF
                     RGDAARTAATGAGLGLAIVEKAVQRMGGSLELSNATDGGLLAHVRLKRA"
     gene            complement(3597..4094)
                     /gene="ispF"
                     /locus_tag="VF308_13260"
     CDS             complement(3597..4094)
                     /gene="ispF"
                     /locus_tag="VF308_13260"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HEX7437671.1"
                     /translation="MNRIRPSIWRIGEGWDIHQLRPDRKLVLGGVEIAHTHGLYGHSD
                     ADALCHAITDALFGAAALGDIGHHFPDTDAQYKGADSLALLAEAARRVKMPGWQIGNV
                     DATVIAQAPKLAPHIQAMRQRIAQALGVALDQVSVKAKTAEGLGPVGQGEAMEARAVC
                     LLWRA"
     gene            complement(4091..4795)
                     /gene="ispD"
                     /locus_tag="VF308_13265"
     CDS             complement(4091..4795)
                     /gene="ispD"
                     /locus_tag="VF308_13265"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011483630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HEX7437672.1"
                     /translation="MTGIQRAVYHALLPCAGAGSRAGTSLPKQYASVAGKAVVAHALD
                     ALAQVERLASTLVVLAPDDAAFEGHVALPIGSRVAVVRCGGSTRAETVANGLAALVAQ
                     GAAADDWVLVHDAARCLIRAEWVERLIDACRDDPVGGLLALPVADTLKAERDGRVAAT
                     LDRRATWQAQTPQMFRIGALRSALARAGPEVTDEAGAMEASGQMPLLVTGALENFKLT
                     YPADFALAERLLKARR"
     gene            4997..>7618
                     /locus_tag="VF308_13270"
     CDS             4997..>7618
                     /locus_tag="VF308_13270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000716 - transcription-coupled
                     nucleotide-excision repair, DNA damage recognition
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEX7437673.1"
                     /translation="MHTPLIAPGKRVALPRPVGSADALLLARFAQQEHARKKLVAIFT
                     AEPSDTQRLEDELAFFAPGLRIAVFPDWETLPYDTFSPHQDLISERLATLWRIRQGEV
                     DVVLMPASTALVRLAPPSFLAAYTFNFKHKQKLDEAALKAQLTLAGYTHVSQVVSPGE
                     YAVRGGLIDLFPMGSAVPYRVDLFGDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPM
                     DEDARAAFRARWREKVEGDPTKVRLYKDLGAGIATAGIEYYLPLFFDETATIFDYLGA
                     DATVALHGEVDEALKRWWIDTRERHRFLQHDRERPILAPEALFLKPEEFFALAGVHAV
                     LTLRGTQAAADASDGVRALPELGVDRGAPEPLQRLQRHVRETPNRVLIVAESEGRRES
                     LLELLRDSRIEPPVVTSLAEFQAGAEKVAIAVAPLAEGFVWGDAAAGVAIEFVTETEL
                     FATPPTTRRRRKQEQVSDVSALIRDLSELKVGDPVVHVNHGIGRYVGLKTIDLGAGEG
                     GSSEFLHLEYADKATLYVPVSQLHLIARYTGVSAEEAPLHRLGSGQWDKARRKAAEQV
                     RDTAAELLNLYARRAAREGHAFRFQPHDYEAFAASFGFEETPDQQAAIHAVIQDMVSP
                     RPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVAILAPTTLLAEQHFQNIADRFGKWP
                     IKVAELSRFRSPKEVKATLAGLADGTIDIVVGTHKLLSPGVKFKRLGLLVIDEEHRFG
                     VRHKEAIKAMRADVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLSIKTFVRSE
                     SSGTIREAILRELKRGGQVYFLHNDVATIEHRRETLQALLPEARIAVAHGQMPERELE
                     RVMRDFVAQRHNVLLCST"
BASE COUNT         1225 a         2687 c         2572 g         1134 t
ORIGIN      
        1 gcggcttgaa cccgctgccg tggggcttga gcatcggcct ggtgagggcc agccattcct
       61 cgcggctgtg cggcccgaag cctttggcga tactgagcag gtagtcggcc gcctcttcga
      121 gcgtcgccca ttccatcggc atgccgaggt aggtgccgat gcgcacgagc gcggccggct
      181 cgatcgtcgg gccgacatcg ttgaggacga ggcgaccgat cggcgactgc gccaaggcgg
      241 cgagggcgag cccgatcagg ccccccatcg aggtcccgac ccagtgcacc gtctcggcgt
      301 cgaggcgggc gagcaaggtc accatgtcgg ccacataggc gggaatctgg tagcccatcg
      361 gatcggcgag aaagtcggac tggccgcgcc cgaccacgtc ggggcagacc acccgatagg
      421 tgtcgcacag ggcgccggcg agcgtgtcga aatcgcgccc ctggcgactc aggccgtgca
      481 cgcagaccag tacacgccga ttggccgggt cgccccattc ccaataggcc atgcggtgca
      541 ggccgcggcc atcgagacat tgcacatggc gcaggcgcgg gctgatcatt cggaggttcc
      601 ttggtttcgg gattgccgcg gcgattcgca gcgcgcggcg attcgcttca cttcaactgg
      661 atcgttcccg aaacgttgac cgtgacggcg gccttgccgg cttcgaccgg caaggcctcg
      721 tcgacggaag ccgacatcgc cctggcctgc agctgcatcg gccgcacggg cggcgcttcg
      781 ttcgcattca cgttgacctc gcggatcgca tagccggcgt agccgaacag gcgcgcatag
      841 tcggcggcct tggcgcggta gcgcgcgatg gcctgcgccg agacatcggc ctcggccttc
      901 tcgcgcacct cgcgcgagag gctgtagccg acacggccga cggtcagcgt cgagatgcgg
      961 ccggcgagct gcgagatcgc ttgcaggtcg cggccttcga cgacgagctc ggcgctgcct
     1021 tgccagccgc tgatgccacc cttgctcgca tagcgcgggg tgagcgagaa attgccggtc
     1081 tgcacatcga gctggccggg ccgcgccgct ttcttcgctt cgcccagcgc ggcgtcgagc
     1141 gcctgcttca actgcgcctg caccacggcg gcatcagagc cttcgcgcgt ggtcgagaac
     1201 gtgatcgaca gcaggtcgcg cgggacctcc aggctcgcgc tcgcggcgag gttcagcacg
     1261 ccctgcggcg ccggcgcctg ggcgaacgcg cgcggcgccg cgagtgccag cagcaaggcg
     1321 ggaaggagcg tgggtgtgac gagacggcgc atcgagatcc tgatgaggtt atagacgcaa
     1381 cgcggaaccg gcatctcgtc acgaccaggc cgggattttg taacagatgg tcaggggtgc
     1441 ccaaaaaccc gagacaaacc tgcgcaaaat cggcgctgtt acaaatagga gttccatgag
     1501 cacagccctc aacgcccgcc cggaccgcat cgcggtggtc gacgacgacg cccgcatccg
     1561 cgacctgctg cgtcgctacc tgacccagga aggcttcgag gtcctgctcg ccgaagacgc
     1621 gaaggccctg aaccgcctcc tcacgcgcga gaccgtgaac ctgatcgtgc tcgacctgat
     1681 gctgcccggc gaggacggcc tgtcgatctg ccggcgcctg cgcgccgcca acgacctgac
     1741 gccgatcatt atgctgaccg ccaaggtcga ggacgtcgac cgcatcgtcg gcctcgaggt
     1801 cggcgcagac gactatctgc ccaagccctt caatccgcgc gagctgctcg cgcgcatcca
     1861 tgccgtgctg cggcgccggc cgacgctcga agcgcccggc gctccggccc tcgacgcgca
     1921 gaccgtgacc ttcggcccgt tcgagttcga cctcgcgctg cggcgcctct cgaaggacgg
     1981 cgagcagatc gcgctgacga ccggcgagtt ctcgatgttg aaggccctgg tgcgccatcc
     2041 gcgccagccg ctctcgcgcg ataagctcgc gcagctggcg cggggccgcg agttcgagcc
     2101 cttcgatcgc agcctcgacg tgcagatctc gcgcctgcgc aagatggtcg agcccgatcc
     2161 gacccagccg cgctacatcc agacggtgtg gggagtcggc tacgtgttcg tgccggacgg
     2221 cgcggcgtag cgccggtcgc cccgagctcc ggcaatgccg caaaagcgcg ccgccctcag
     2281 ccttttctgg cgcacgttct tccttctcgc cgtgctgctc gcgagcggcg ttttcgcctg
     2341 ggtgcagacc tttcgggcgc tcgaattcga accgcgcgcg gtgcaggcgg cgcagcagat
     2401 cgccagcctc gtcaacctca cgcgggccgc gctgcgcagc agcgacggca tcaaccgggt
     2461 cgcgctcatc aagggggtgt cgaaactcga atcggtgcag gtcgcgccgc gcgagcccca
     2521 ggacacgtgg gagccctacg aactcgaccg cctgtcgcgc gcgatcggcg ccgaattgcg
     2581 cgcgcggctc ggcgccgaca cgctggtcgc gggctcgatg aacggcgtgc cgggcctctg
     2641 ggtgggtttc tcgatcgatc gcgatccata ctggctgcgc atcgatccgg cccgcgtcgg
     2701 tccgatgtcg tggagcacga tcacgctgtg ggtcgggatc gcgctgctcg cgacggtgct
     2761 cggctcggcc gcgatcgcgc gcctcatcaa ccagccattg aaagagcttt ccttcgcggc
     2821 gacccgcatc ggcgaaggcg agttcgattc gcgcctcgac gagaccacga tgacgagcga
     2881 gatccgccag gtcaacatgg gcttcaaccg gatggcgcgc gaactggcca aggtcgagca
     2941 ggatcgcgcg gtgatgctcg ccggcatttc gcacgacctg cggaccccgc tcgcgcgctt
     3001 gcggctcgaa gccgaaatga gcgtcaaaga cgaggaagcc aagtccaaca tggcgcagga
     3061 catcgaccag ctcgacgcca tcatcgacaa gttcatggac tacgcgcgcc cgggcgaggt
     3121 caagctcgtg ccggtgaacc tgagcgcggt ggtcgagcgc gagatggggt cgtttcgcga
     3181 caagagccag atgaagatcc gctcgcgcgt cggactcgac acgcgcgtcc tggccgacga
     3241 caccgagctc ggccgggtgc tgcagaacct gttcgaaaac gcgcgccgct acggccgctc
     3301 ggtcgacacc ggtgtcgcca acgtcagcgt cagccatgcc cggaccggcc cctgggtgat
     3361 cctcagcgtg cgcgaccacg gtcagggtgt tgacccgaag aagctcggcc agctcacgac
     3421 cccgttcttt cgcggcgacg cggcccgcac cgcggccacc ggtgccggct tgggcctggc
     3481 gatcgtcgag aaagcggtgc agcgcatggg cggatcgctc gaactcagca acgccaccga
     3541 cggcggtttg ctggcgcacg tgcgcctgaa gcgggcgtga tcggcggtag cggccgctac
     3601 gcgcgccaca acaggcagac cgcccgcgcc tccatcgctt cgccctgccc gaccgggccg
     3661 agcccttcgg cggtcttggc cttgacgctg acctgatcga gggcgacgcc gagcgcctgg
     3721 gcgatgcgct ggcgcatcgc ctggatgtgg ggcgcgagct tgggcgcctg agcgatcacg
     3781 gtcgcatcga cattgccgat ctgccatccg ggcatcttga cgcgccgcgc cgcttcggcg
     3841 agcagcgcga gcgaatcggc gcccttgtat tgcgcatcgg tgtcgggaaa gtgatggccg
     3901 atgtcgccga gcgcggccgc gccgaagagc gcgtcggtga tcgcatggca cagcgcatcg
     3961 gcgtcggagt ggccgtaaag gccgtgcgtg tgcgcgatct cgaccccgcc gaggacgagc
     4021 ttgcgatcgg gcctgagctg gtggatgtcc cagccttcgc cgatgcgcca gatcgagggc
     4081 ctgatcctgt tcatcggcgc gccttcaaca agcgctccgc cagcgcgaag tcggccggat
     4141 aggtgagctt gaaattctcg agggcgccgg tcacgaggag cggcatctgg ccgctcgctt
     4201 ccatcgcgcc ggcctcgtcg gtcacctcgg gcccggcccg ggcgagcgcg ctgcgcaggg
     4261 cgccgatgcg aaacatctgc ggcgtctgcg cctgccaggt ggcgcgacgg tcgagcgtgg
     4321 ccgcgacgcg accgtcgcgc tcggccttca gcgtgtcggc gaccggcagc gcgagcaggc
     4381 cgccgaccgg atcgtcgcgg caggcatcga tcagacgctc gacccattcg gcccggatca
     4441 ggcagcgcgc cgcgtcatgg accagcaccc agtcatcggc cgccgcaccc tgcgcgacca
     4501 gcgcagccag gccgttggcg accgtctcgg cgcgcgtcga accgccgcaa cgtacgacgg
     4561 caacgcggct gccaatgggc aacgcgacgt ggccttcgaa agccgcgtcg tccggcgcga
     4621 gcacgacaag cgtcgaggcc agccgttcga cctgcgccag cgcgtcgagc gcgtgggcga
     4681 cgactgcctt gcccgccacc gatgcgtact gcttcggcag gctcgtgccg gcacgcgacc
     4741 ccgcgcccgc acagggcagc agggcgtgat acaccgcgcg ttggataccc gtcatgaccc
     4801 gctgcaaaag gtgggctgcg cgggctgctg cgatcctgct cgagacgtcg tgctcatggg
     4861 ctcggtcgag tatatgaaac gccgcgatgc cagagcgcag cgccccgccg aagtcggcgc
     4921 atcgagcacc gcgcgagccg cctccctaca atcgagcgct caccgattgg cgccgaggcg
     4981 ctgcgcgccg gagcccatgc acacccccct catcgccccc ggaaaacgag tcgccctgcc
     5041 ccgccccgtc ggctcggccg atgccttgct gttggcccgt ttcgcgcagc aggagcacgc
     5101 ccgcaagaag ctggtcgcga tcttcacggc cgagccctcg gacacccagc gcctcgaaga
     5161 cgaactggcg ttcttcgcgc cgggtctgcg catcgccgtg ttccccgatt gggagacgct
     5221 gccctacgac accttctcgc cccaccagga cctgatctcc gagcgcctgg cgacgctctg
     5281 gcgcatccgc cagggcgagg tcgacgtggt gctgatgccg gcctcgaccg cgctcgtgcg
     5341 cctcgccccg ccgagcttcc tcgccgccta caccttcaac tttaagcaca agcagaagct
     5401 cgacgaagcg gcgctgaagg cgcaactcac gctcgccggc tatacccatg tgagccaagt
     5461 cgtctcgccg ggcgaatacg cggtgcgcgg cggcctgatc gatctcttcc cgatgggctc
     5521 ggcggtgccg tatcgcgtcg acctgttcgg tgacgagatc gattcgatcc gcaccttcga
     5581 ccccgacagc caacgcagtc tctacccggt gcccgaggtg cgcctcctgc ccgggcgcga
     5641 attcccgatg gacgaggacg cgcgcgccgc gttccgcgcg cgctggcgcg aaaaggtcga
     5701 gggcgacccg accaaggtgc gtctctacaa ggacctcggc gccggcatcg cgaccgccgg
     5761 catcgagtac tacctgccgc tcttcttcga cgagaccgcg acgatcttcg actacctcgg
     5821 cgccgacgcg acggtcgcgc tgcacggcga agtcgacgag gcgctgaagc gctggtggat
     5881 cgatacccgc gagcgccacc gcttcctgca gcacgaccgc gagcgcccga tcctcgcgcc
     5941 tgaagcgctg tttctcaaac ccgaagagtt cttcgcgctg gccggcgttc acgcggtgct
     6001 cacgctgcgc ggcacacagg cggcggccga cgcttccgac ggcgtgcggg ctctgcccga
     6061 actcggtgtc gatcgcggcg cacctgagcc gctgcaacgc ctgcaacggc atgtgcggga
     6121 gacgccgaac cgggtcctga tcgtggccga aagcgaaggc cggcgcgaga gcctgctcga
     6181 gctgctgcgc gacagccgga tcgagccacc ggtcgtcacc tcgctggccg agttccaggc
     6241 cggcgcggag aaggtcgcga tcgcggtcgc gccactggcc gaaggtttcg tctggggcga
     6301 cgcggcagcc ggcgtggcga tcgaattcgt caccgaaacc gagctcttcg cgaccccgcc
     6361 gacgacgcgc cggcggagga agcaggagca ggtcagcgac gtcagcgcgc tgatccgcga
     6421 cctctcggaa ctgaaggtcg gcgaccccgt cgtgcacgtc aaccacggca tcggccgcta
     6481 cgtcggcttg aagaccatcg atctgggcgc gggcgaaggc ggcagcagcg agttcctgca
     6541 cctcgagtac gccgacaagg ccacgcttta cgtgccggta tcgcagttgc acctgatcgc
     6601 gcgctacacg ggggtcagcg ccgaagaggc gccgctgcac aggctcggtt cgggccaatg
     6661 ggacaaggcc cggcgcaaag ccgccgagca ggtccgcgac accgctgccg aactgctcaa
     6721 cctctatgcg cgccgcgcgg cgcgcgaagg ccacgcattc cgcttccagc cgcacgacta
     6781 cgaggcattc gcggcgagtt tcggcttcga ggaaacgccc gaccagcagg ccgcgattca
     6841 cgcggtgatc caggacatgg tctcgccgcg gccgatggat cgcctggtct gcggcgacgt
     6901 cggcttcggc aagaccgagg tcgcgctgcg cgccgcgttc gtcgccgtca ccggcggcaa
     6961 gcaggtcgcg atcctcgcgc cgacgacgct gctcgccgag cagcatttcc agaacatcgc
     7021 cgaccgcttc ggcaaatggc cgatcaaggt cgccgagctg tcgcgctttc gctcgccgaa
     7081 ggaagtgaag gcgacactcg cgggccttgc cgacggcacg atcgacatcg tcgtcggcac
     7141 ccacaagctg ctcagccccg gcgtgaagtt caagcgcctg ggccttctcg tgatcgacga
     7201 ggaacatcgc ttcggcgtgc gccacaagga agcgatcaag gcgatgcgcg ccgacgtcga
     7261 cgtgctgact ctcaccgcga cgccgatccc gcgcacgctc ggcatggcgc tcgaggggct
     7321 gcgcgacctc agcgtcatcg cgaccgcacc gcagcgccgg ctctccatca agaccttcgt
     7381 gcgcagcgag agcagcggca cgatccgcga ggcgatcctg cgcgaattga agcgcggcgg
     7441 ccaggtctac ttcctgcaca acgacgtcgc gacgatcgaa caccggcgcg agacgctgca
     7501 ggcgctgctg cccgaagcgc ggatcgcggt cgcgcacggc cagatgcccg agcgcgagct
     7561 cgaacgcgtg atgcgcgatt tcgttgccca gcgccacaac gtgctgctgt gctcgacg
//
LOCUS       DASVHM010000719         2239 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_50466, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000719 DASVHM010000000
VERSION     DASVHM010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50466"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..325
                     /locus_tag="VF308_13275"
     CDS             <1..325
                     /locus_tag="VF308_13275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009664612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ketopantoate reductase C-terminal
                     domain-containing protein"
                     /protein_id="HEX7437674.1"
                     /translation="SLSDAILDDPLLYAFIMRTMGEAAAIGERIGCPITQSGDERMQV
                     ARKLGNFKTSMLQDSLAGRPLELDALVTAVHEIGARVGVVTPNIGALLGLTRLMARQR
                     GLYPA"
     gene            404..961
                     /locus_tag="VF308_13280"
     CDS             404..961
                     /locus_tag="VF308_13280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEX7437675.1"
                     /translation="MEVLQLDMSGRPQSWISAREAAVIYASDGVAWTLGKAFYVLRGG
                     TQRRTGLQSRIEVHPIIAVRGAVPSRAWRRTPALSNPKLFARDRQVCAYCGGRFHVDE
                     ITREHIVPTSRGGLDTWMNCISACRPCNGHKGNRLPEEADMSLLFLPYVPSLHEDMIL
                     RGRRILADQMEFLLASVPRSSRLHA"
     gene            1113..1586
                     /locus_tag="VF308_13285"
     CDS             1113..1586
                     /locus_tag="VF308_13285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HEX7437676.1"
                     /translation="MKKLFLAVLVASVGACATSSPDVVQRYDAQRMSQVQDATILSIR
                     PVTVDGSQSGIGTTAGAVVGGVAGSSIGGRRDSVVGTVIGAVVGGVVGNAAERAGTRE
                     NAVEILVQLRNGERRAIVQAQGSEVLGPGDAVVLVTTGGKTRVTRAPAVLPAPRS"
     gene            complement(1650..>2239)
                     /locus_tag="VF308_13290"
     CDS             complement(1650..>2239)
                     /locus_tag="VF308_13290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007866898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX7437677.1"
                     /translation="NETFIDELAAAAGKDPYAYRMSLLTSQPRFQNVLKMAADKAGWG
                     TAAPAGRFRGIALMEGYDTYMAQVAEISMRGGVPVVHRVTTVADLGRMVNPDTVEAQI
                     QSGIIFGLTAALYGDITVDKGRVQQTNFDKYKMVRMNEAPQIDIVLVPSTEKPGGIGE
                     PATALIGPAVGNAVFAATGKRLRKMPMTAENIAAA"
BASE COUNT          329 a          783 c          756 g          371 t
ORIGIN      
        1 ttcgctgagc gacgccatcc tcgacgatcc gctgctgtac gccttcatca tgcgaacgat
       61 gggcgaagcg gccgccatcg gcgagcggat cggctgcccc atcacgcagt cgggcgacga
      121 gcggatgcag gtcgcgcgca agctcggcaa cttcaagaca tcgatgctgc aggattcgct
      181 cgccggccgg ccgctcgagc tcgacgcgct cgtcaccgcg gtccacgaaa tcggtgcccg
      241 cgtcggcgtc gtcacgccga acatcggcgc cctgctcggc ctgacccggc tcatggcgcg
      301 ccagcgcggc ctttaccctg cgtagcgtcg gcgcatcgcc gccggcgcgc cggtcgcggt
      361 cgtcttgagc gacgagccgg acatgcatta cgcttcgagg gtgatggaag tcctccagct
      421 cgacatgtcc ggccggccgc agtcctggat ttcggccagg gaggccgccg tcatttacgc
      481 cagcgacggc gtcgcctgga cgctcggcaa ggccttttac gtcctgcgtg gcggcacgca
      541 gcgccgcacc ggcctgcagt cgcgcatcga ggtgcatccg atcatcgccg tgcgcggggc
      601 ggtgccgagc cgcgcctggc gccgcacgcc ggccctcagc aatccgaagc tcttcgcccg
      661 cgaccggcag gtctgcgcct actgcggcgg gcgtttccat gtcgacgaga taacgcgcga
      721 gcacatcgtg ccgacctcgc gcggcgggct cgacacctgg atgaactgca tcagcgcctg
      781 ccgcccgtgc aacggccaca agggcaaccg cctgcccgaa gaggccgaca tgtcgctgct
      841 tttcctgccg tacgtgccga gcctgcacga ggacatgatc ctgcgcgggc gccgcatcct
      901 cgccgaccag atggagttcc tgctcgccag cgtgccgcgc agcagccggc tgcacgcctg
      961 acggccgacc gggcggcgcg gctcgttgct tcggcccacc ggatcgtccc tttgtctcga
     1021 cggcgggaac ttccatgcgc cgcgcgcatc tctccgggtc aacgaaacgg ggcaccatcg
     1081 cgttgcataa gatggttcag gagagttcaa tgatgaagaa attgtttctc gcggtgctcg
     1141 tcgcatcggt cggcgcgtgc gccacttcga gtccggacgt ggtgcagcgc tatgacgcgc
     1201 agcgcatgtc gcaggtccag gacgccacga tcctgtcgat ccggccggtc acggtcgacg
     1261 gcagccagag cggcatcggc acgaccgccg gcgccgtggt cggtggcgtc gccggctcct
     1321 cgatcggcgg gcggcgcgac tcggtcgtcg gcaccgtgat cggcgcggtc gtcggtggcg
     1381 tcgtcggcaa tgcggccgag cgcgccggca cgcgcgaaaa cgcggtcgag atcctggtcc
     1441 agttgcgcaa cggcgaacgc cgggcgatcg tgcaggcgca gggcagcgaa gtgctgggcc
     1501 ccggagatgc cgtcgtcctc gtcacgaccg gcggcaagac gcgcgtgacg cgtgcacccg
     1561 cggtgctgcc ggccccgcgc agctgagcgc cggtccagga ccaaaaaaaa gcgcgccgac
     1621 ggcgcgcttt ttcatggccg ggatccgtgt caggcggcgg cgatgttttc cgctgtcatc
     1681 ggcatcttgc gcaggcgctt gccggtcgcg gcgaacaccg cgttgccgac cgccggccct
     1741 atcagtgcgg tcgccggctc gccgatgccg cctggcttct ccgtgctcgg aaccagaacg
     1801 atgtcgatct gcggcgcctc gttcatgcgg accatcttgt atttgtcgaa gttggtctgc
     1861 tggacgcgcc ccttatccac cgtgatgtcg ccgtagagcg cggccgtgag gccgaagatg
     1921 atgcccgact ggatctgcgc ttcgaccgtg tcggggttga ccatgcgccc gaggtcggcc
     1981 acggtcgtga cacggtgcac gaccggtacg ccgccccgca tcgaaatctc ggccacttgc
     2041 gccatgtagg tgtcgtagcc ttccatcaac gcgatgccgc ggaaacgccc ggccggcgcc
     2101 gccgttcccc aaccggcctt gtcggccgcc atcttcagca cgttctggaa gcgcggctgg
     2161 ctcgtcagca gcgacatgcg ataggcatac ggatccttgc cggccgcggc ggcaagctca
     2221 tcgatgaagg tctcgttgg
//
LOCUS       DASVHM010000720         3051 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1135494, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000720 DASVHM010000000
VERSION     DASVHM010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1135494"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            153..1118
                     /locus_tag="VF308_13295"
     CDS             153..1118
                     /locus_tag="VF308_13295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7437678.1"
                     /translation="MKRRTILQAPTLLCLPAVARAQSFPTKPIRYIVPVAAGGGNDMI
                     ARVVTERWGKVLGQNFIVENQGGGGGVIASVSVARAAPDGYTLMQGYVATHGTTPATR
                     RVPYDAIKDFTPIGMIGGTPNVLVVNSALPVKTLAEFIEHVKKNPGRISYGSAGQGSL
                     THLTMELFKQQIGAFMLHIPYRGIAPAFTDLLGGQTQAMFPGLAAALPHLRSGRVRAL
                     AVTGKARSDQLKDVPTLEESGFKGFDAIQWYGSVGPAGIPADVVRHLNESQVAVLKDP
                     DLRERLAVEAVEPMPMTPEQFGQYIRADIQRWTALAKAKNIHLDE"
     gene            1225..1995
                     /locus_tag="VF308_13300"
     CDS             1225..1995
                     /locus_tag="VF308_13300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437679.1"
                     /translation="MSAIMFETVGSTQARPATRRFYVAMAAVFVLIAFTGFIATYWAK
                     VATGTFTGAPILHLHGALFFSWTLFFLVQTVLVASGRTLDHRSWGLAGISLATAMAFT
                     VVLAAINSIRVAGLIGMADEARRFSYVSLSGVVLFAAFMTAAIVWVKRADLHKRLMIL
                     AMIPLMHASVARFFMLLFAPPDAKGPPPVFVSVPPGLAVDLLLVAAIVYDWRTRGRPH
                     PVYLIGGALLLADQLLAVPISATPTWMAIATWVQSLAG"
     gene            2000..>3051
                     /locus_tag="VF308_13305"
     CDS             2000..>3051
                     /locus_tag="VF308_13305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011515407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent alcohol dehydrogenase"
                     /protein_id="HEX7437680.1"
                     /translation="MKAAVLHAPHQPMTIEEVVIAKPKRREVLVRTAAAGLCHSDLHF
                     IEGAYPTPVPVVLGHESAGIVEEVGEDVTYLKPGDHVISCLSVFCGHCEFCLSGHLSI
                     CQTPDVKLAPGVAKRLTWQGRHLNQFLNLSSFAEQMVVHEHALVKIRDDMPLDLASLI
                     GCSVVTGYGAVVHTARIEPGSTVAVFGAGGIGLATINAAQIAGAGRIVAIDKDPFKLD
                     LARAFGATDVVDASEGDTVKRIVALTGGGVHYSFECIGLKATAEQSFSALRSGGTATL
                     IGMIPVGTKIELHGVDFLRERRIQGCMMGSNRFRTDMPRLIEFYLQGRLHLAEMVSAR
                     SGLAQINEGLAALKTGG"
BASE COUNT          461 a         1100 c         1015 g          475 t
ORIGIN      
        1 tcggacgccg acgctaccgc gaccggcgcc gtcgcggtcc ccccgagaca cggggcggaa
       61 gcgagcgacg cgccggccgt gcgatgcctc acgcccggcg cgcgagaatc gggcgccaga
      121 ccggcgcagt cgacatacgg aggagacatc gaatgaagcg ccgcacgatc ctgcaggcac
      181 cgacccttct ctgccttccc gccgtggcgc gggcgcaatc gttcccgacg aagccgatcc
      241 gctacatcgt cccggtcgcc gcaggcggcg gcaacgacat gatcgcgcgc gtcgtcaccg
      301 agcgctgggg caaggtgctc ggccagaact tcatcgtcga aaaccagggc ggcggcggcg
      361 gcgtcatcgc cagcgtctct gtggcgcgcg ccgcgcccga cggctacacg ctgatgcagg
      421 gctacgtcgc cacccacggc acgacgcccg cgacgcgccg cgtgccgtac gacgcgatca
      481 aggacttcac gccgatcggc atgatcggcg gcacgcccaa cgtgctcgtc gtcaacagcg
      541 cgctgccggt gaagacgctc gccgagttca tcgagcacgt gaagaagaat cccggccgca
      601 tcagctacgg atcggcgggg caaggctcgc tgacgcacct gacgatggag ctcttcaagc
      661 agcagatcgg cgccttcatg ctgcacatcc cctaccgcgg catcgcgccc gcgttcaccg
      721 atctcctcgg cggccagacg caggcgatgt tccccggcct cgccgcggcg ctgccgcacc
      781 ttcgctcggg gcgcgtgcgt gcgctcgcgg tcaccggcaa ggcgcgcagc gatcagctca
      841 aggacgttcc cacgctcgag gaatccggct tcaaggggtt cgatgcgatc cagtggtacg
      901 ggtcggtcgg cccggcggga atccccgccg acgtcgtccg ccacctcaac gaatcgcagg
      961 tcgcggtgct gaaggatccc gacctgcgcg agcgcctcgc cgtcgaggcg gtcgagccga
     1021 tgccgatgac gcccgagcag ttcggccagt acatccgcgc cgacatccag cgctggaccg
     1081 cgctcgccaa ggccaagaac atccatctcg acgaatgacg gcgcgcgcgg tcggcgcgcc
     1141 gaccgcagtt gcggctttgc cggatcgccg ctaccgtccc gcctgcccgt tcgattggaa
     1201 caggcgaaac cggggagccg atctgtgtca gccatcatgt tcgagacggt cggatccacg
     1261 caggcgcgcc ctgccacgcg caggttctac gtcgcgatgg ccgccgtctt cgtgctcatc
     1321 gccttcaccg gcttcatcgc gacgtattgg gcgaaggtgg cgaccggcac gttcaccggc
     1381 gcgccgatcc tgcacctcca cggcgcgctg ttcttcagct ggacgctgtt cttcttggtc
     1441 cagaccgtcc tcgtcgcgag cgggcggacg ctcgatcatc gatcgtgggg cttggcgggc
     1501 atctcgctcg ccacggcgat ggcgttcacg gtcgtgctcg ccgcgatcaa ctcgatccgc
     1561 gtcgccggcc tgatcggcat ggccgacgag gcacgccggt tctcgtacgt gtcgctgagc
     1621 ggggtggtgc tgttcgccgc cttcatgacg gcggcgatcg tctgggtcaa gcgcgccgac
     1681 ctccacaagc ggctgatgat cctggccatg atcccgctca tgcatgcgtc ggtcgcacgc
     1741 ttcttcatgc tgctcttcgc gccgcccgat gccaaggggc cgccgccagt gttcgtctcg
     1801 gtgccgccgg gcttggcggt cgacctgttg ctcgtcgccg cgatcgtcta cgactggcgc
     1861 acgcgcggcc ggccccatcc ggtctacctg atcggcggcg ccctgctcct cgccgaccag
     1921 cttctcgccg ttccgatcag cgcgacgccg acctggatgg cgatcgcgac ctgggtccag
     1981 tcgctggccg gctgacgcga tgaaggccgc cgtcctccac gccccgcacc agccgatgac
     2041 gatcgaggag gtcgtcatcg ccaagccgaa gcgccgcgag gtgctggtgc gcaccgccgc
     2101 cgcgggcctg tgccacagcg acctgcactt catcgaaggc gcctacccga cgccggtgcc
     2161 ggtggtgctg gggcacgagt cggccggcat cgtcgaggag gtcggcgagg acgtcaccta
     2221 cctcaagccc ggcgaccacg tcatctcgtg cctctcggtc ttctgcggcc actgcgagtt
     2281 ctgtctcagc ggccacctct cgatctgcca gacgccggac gtgaagctgg cgcccggcgt
     2341 cgccaagcgg ctgacatggc aaggccggca cctgaaccag ttcctcaacc tgtcgtcgtt
     2401 cgccgagcag atggtcgtgc acgagcacgc gctcgtgaag atccgcgacg acatgccgct
     2461 cgacctcgcc agcctgatcg gctgcagcgt cgtcaccggc tatggcgcgg tcgtgcacac
     2521 ggcgcggatc gagcccggct cgaccgtcgc cgtcttcggc gccggcggca tcggcctggc
     2581 gacgatcaac gccgcgcaga tcgccggcgc cgggcgcatc gtcgcgatcg acaaggaccc
     2641 gttcaagctc gacctggcgc gagcgttcgg cgccaccgac gtcgtcgatg caagcgaagg
     2701 cgacaccgtc aagcgcatcg tcgcgctgac cggcggcggg gtccactact cgttcgagtg
     2761 catcggcctc aaggcgaccg ccgagcaaag cttctcggcg ttgcgctcgg gcggcacggc
     2821 gacgctgatc ggcatgatcc cggtcggcac caagatcgag ctgcacggcg tcgacttcct
     2881 gcgcgagcgc cggatccagg gctgcatgat gggatcgaac cggttccgga ccgacatgcc
     2941 gaggctgatc gagttctacc tgcagggccg gctgcacctg gccgagatgg tctcggcgcg
     3001 aagcgggctc gcgcagatca acgagggctt ggcggcgctc aagacgggcg g
//
LOCUS       DASVHM010000721         4703 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1135552, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000721 DASVHM010000000
VERSION     DASVHM010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4703
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1135552"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..955)
                     /gene="actP"
                     /locus_tag="VF308_13310"
     CDS             complement(<1..955)
                     /gene="actP"
                     /locus_tag="VF308_13310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466045.1"
                     /note="member of the sodium:solute symporter family;
                     cotranscribed with the acs gene which encodes acetyl
                     coenzyme A synthase; mutations affect acetate uptake;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation acetate symporter"
                     /protein_id="HEX7437681.1"
                     /translation="MSRPGRGVAALVKTLVITTLALAGTAALAAGADLGQTQKQATNW
                     TAIAMFAVFVLFTLGITKWAAARTKSAADFYTAGGSITGFQNGLAIAGDYMSAASFLG
                     ISGLVFANGFDGLIFSIGWLVGWPVITFLMAERLRNLGKFTFADVAGYRFSQTPIRIF
                     AAAGSLVVVAFYMIAQMVGAGQLIKLLFGMDYLYAEILVGSIMMMYVLFGGMTATTWV
                     QIIKACMLLGGATFMALAVMWQFGFSPEAMFKRAVEVHDKKDAIMAPGALIKDPISAI
                     SVGMALMFGTAGLPHILMRFFTVPNAKEARKSVGWATTWIGY"
     gene            complement(952..1260)
                     /locus_tag="VF308_13315"
     CDS             complement(952..1260)
                     /locus_tag="VF308_13315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HEX7437682.1"
                     /translation="MEDDLTHRIASHPKYIELKHKRTVLGWWLSLAGVIAYYGFILLV
                     AFDKPFLARKLGSGVTTVGMPLGVAVIVFTILITWYYVRRANSEFDPLTEQIVKGVLK
                     "
     gene            complement(1370..3076)
                     /locus_tag="VF308_13320"
     CDS             complement(1370..3076)
                     /locus_tag="VF308_13320"
                     /inference="COORDINATES: protein motif:HMM:NF014585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HEX7437683.1"
                     /translation="METDPITLSVLQNGLMQVCNEMDLAFVRSAFSPVIAEALDRSDG
                     IYHRDSGELIAQGELGLPVFVGTMQFTVQAVIERVERLRIPLAPGDVFIVNDPYLGGT
                     HLMDVKFVQPFFREGKLWCWLANTGHWPDTGGMVPGGFSANATEVEQEGLRLPPVKLY
                     KKGVLDDEILSIILSNIRIADQRIGDIKAQAAALATGRARLSALLDRYGDVTVDAAIV
                     ELKRRAARQMREKIATIADGVYEGEAFVDSDGVVDEPLRIAMRITKSGGGDVERAALS
                     FDMSGSSPPCQGPMNSVIATTRSSIYLAVKHVFPEAAINAGTFEPLHIVDPEGTFLYA
                     HYPRPVSGCAAEVSQRIAEAVFAALGQAIPDQLFGAPAGTSGNLGVGGFDPEKNHAYV
                     MYVISGGGYGGSPAGDGLSNGCSTIGISKTTPIEIMEQLYPVLFEEYSLHEGSGGAGE
                     HRGGFGVNYRIRLRRGEARVSMVMDHGRAGPPGAQGGGAGGTNKVQVIRDGVVYVPPH
                     LSKDQDIAIHAGDVIAVSTPGGGGFGKPEARPADALARDLALGYYSTDEARRLFAESA
                     ER"
     gene            complement(3495..>4703)
                     /locus_tag="VF308_13325"
     CDS             complement(3495..>4703)
                     /locus_tag="VF308_13325"
                     /inference="COORDINATES: protein motif:HMM:NF014071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HEX7437684.1"
                     /translation="FGNVVTYDMGGTSSDVALVLGGQPSVSSDLELEYAMPIHVPMVD
                     VHSIGAGGGSIASVDASGMLKVGPESAGAAPGPICYGRGGTRPTITDANLALGRLDPD
                     RLLAVEHAVAMDAIRAALVAQVGGPLGLDATAAAAAIVRVANDRMAGAIRMVSLARGH
                     DPRDFALFAFGGAGPLHAAALARELAIPKLLIPARPGLTNALGCVVADLRHDFVATVN
                     QPLEALAEGRIAEVFAAQVESGQSLLARENVAVEQVVTLHRADMQFQGQSHILPVAID
                     STAITVAELRAVFTAAYWKRFGVELPEIRPVLVNLHTAVIGKRKAVSLKAIAAARPAA
                     SLADAKRATRPVWFSGGWQDTPVYVRERLPVDARFVGPAIVEQLDCTTVVEPGNRVEV
                     DAIGNLIVSV"
BASE COUNT          743 a         1628 c         1623 g          709 t
ORIGIN      
        1 agtagccgat ccaggtggtg gcccagccga ccgacttgcg cgcttccttg gcgttgggga
       61 cggtgaagaa gcgcatcagg atgtgcggca gccccgcggt gccgaacatc agcgccatgc
      121 cgaccgagat cgccgagatc gggtccttga tcagcgcgcc cggtgccatg atggcgtcct
      181 tcttgtcgtg cacctcgacc gccctcttga acatcgcctc gggcgaaaag ccgaactgcc
      241 acatcaccgc cagcgccatg aaggtcgcgc cgccgagcag catgcaggcc ttgatgatct
      301 gcacccaggt cgttgccgtc atgccgccga acagcacgta catcatcatg atcgagccga
      361 ccaggatctc ggcgtacagg tagtccatgc cgaacagcag cttgatgagc tggcccgcgc
      421 cgaccatctg ggcgatcatg tagaaggcga cgacgacgag cgagcccgcc gcggcgaaga
      481 tgcggatcgg cgtctgactg aagcggtagc cggcgacgtc ggcgaaggtg aacttgccga
      541 ggttgcgcag tcgctcggcc atcagaaagg tgatgacggg ccagccgacg agccagccga
      601 tcgagaagat caggccgtcg aagccgttgg cgaacaccag acccgagatg ccgaggaagg
      661 acgctgccga catgtagtcg ccggcgatcg ccaggccatt ctggaacccg gtgatgctgc
      721 cgcccgcggt gtagaagtcg gccgcgctct tggtgcgcgc cgccgcccac ttggtgatgc
      781 cgagcgtgaa cagtacgaag accgcgaaca tggcgatcgc ggtccagttg gtggcctgct
      841 tctgggtctg gccgagatcg gctccggcgg ccagcgccgc cgtgccggcc agagccagcg
      901 tcgtgatgac gagggtcttg acgagggctg cgacgcccct gcccgggcgg ctcatttcag
      961 cacccccttg acgatctgct cggtcagcgg gtcgaactcg ctgttggcgc gccgcacgta
     1021 gtaccaggtg atgaggatcg tgaacacgat gaccgcgacg ccgagcggca tgccgaccgt
     1081 cgtcacgccg ctgccgagct ttcgcgcaag gaacggcttg tcgaacgcga ccagcaggat
     1141 gaacccgtag tacgcgatca ccccggccag cgacagccac cagccgagga ccgtgcgctt
     1201 gtgtttgagc tcgatgtatt tcggatgact cgcgatccga tgggtcaggt cgtcttccat
     1261 gccgcctccc taggtcgtgg ggcttcctcc gacggggaag cagacacgga tcatgcgccg
     1321 ccgcgttgac cgccatctga tacgaatcaa ggtccgtgcg tgcgaacgcc tatcgttcag
     1381 cactctcagc gaacaggcgt cgcgcctcgt cggtgctgta gtagccgagc gcgaggtcgc
     1441 gcgcgagcgc gtcggccggc cgcgcctcgg gcttgccgaa gccgccgccg cccggcgtcg
     1501 acacggcgat gacgtcgccg gcatggatcg cgatgtcctg gtccttcgag agatgcggcg
     1561 gcacgtagac gacgccgtcg cggatgacct ggaccttgtt cgtgccgccg gcgccgccgc
     1621 cctgcgcgcc cggcgggccg gcccggccgt ggtccatgac catcgacacg cgcgcctcgc
     1681 cacggcgcag ccggatgcgg tagttgacgc cgaagccgcc gcgatgctca ccggcgccgc
     1741 ccgacccctc gtgcagcgag tactcctcga acagcacggg atagagctgt tccatgatct
     1801 cgatcggcgt cgtcttcgag atgccgatcg tcgagcagcc gttcgagagg ccgtcgcccg
     1861 cggggctgcc gccgtagccg ccgcccgaga tcacgtacat cacgtaggcg tggttcttct
     1921 ccgggtcgaa gccgccgacg ccgaggttgc cgctcgttcc cgccggcgcg ccgaacagct
     1981 ggtccgggat cgcctggccg agcgccgcga acaccgcctc ggcgatgcgc tggctgacct
     2041 cggcggcgca gcccgagacc gggcgcgggt agtgcgcgta gagaaaggtg ccctcggggt
     2101 cgacgatgtg cagcggctcg aacgtgccgg cgttgatcgc cgcttccgga aagacgtgct
     2161 tgacggcgag gtagatcgat gagcgcgtcg tcgcgatgac gctgttcatc ggcccctggc
     2221 acggcggcga cgagccgctc atgtcgaacg acagcgccgc gcgctcgaca tcgccgccgc
     2281 cgctcttggt gattcgcatc gcgatccgga gcggctcgtc gacgacgccg tcggaatcga
     2341 cgaacgcctc gccttcgtag acgccgtcgg cgatggtcgc gatcttctcg cgcatctgcc
     2401 gcgccgcgcg ccgcttgagc tcgacgatcg cggcgtcgac ggtgacgtcg ccgtagcggt
     2461 cgagcagcgc cgacaaccgc gcccggcctg tcgccagcgc cgccgcctgc gccttgatgt
     2521 cgccgatccg ctggtcggcg atgcggatgt tggacaggat gatcgacagg atctcgtcgt
     2581 cgaggacgcc cttcttgtaa agcttgaccg gcggcaggcg cagcccttcc tgctcgactt
     2641 cggtggcgtt ggccgagaag ccccccggca ccatgccgcc ggtgtcgggc cagtggccgg
     2701 tgttggcgag ccagcaccag agcttgcctt cgcgaaagaa cggctgcacg aacttgacgt
     2761 ccatcagatg cgtgccgccg agataggggt cgttgacgat gaagacatcg ccgggcgcga
     2821 gcggaatcct cagccgctcg acgcgctcga tcaccgcctg caccgtgaac tgcatcgtgc
     2881 cgacgaagac gggcagcccg agctcgccct gcgcgatcag ctcgccgctg tcgcggtgat
     2941 aaatgccgtc ggagcgatcg agcgcctcgg cgatcaccgg actgaaggcg ctgcgaacga
     3001 acgcgaggtc catctcgttg cagacctgca tcaggccgtt ctgcaagacc gagagggtga
     3061 tcgggtcggt ctccatggct tctttcatcg tacgcgttgc ggaggagcgg tgcagaggtc
     3121 gttcgcgacg cagaggcctc tcaggtcagc ggcgggggcg cccggcccgc ggtccgacac
     3181 tggcggctgt tgacgaccga gctcagggtg ccgcggcgcg ctcgtcacgc gtccacctcg
     3241 gcccgcattc cggacgcccc caccactgcc cagcgacgct ctggaacaag agccgatccg
     3301 gttccgattc cagagcgcag ggcggcgagt gatgggtgtg gtccgggcgg cggcgcagcg
     3361 atgtcccgtg acgagcgaac cgtgcaacgg gacgagccgc ccgtcaacag ccgccccggt
     3421 gcgtcgccgt ccggggcata cccgtcgctc accgccacgt gtgcctcgcc ccgtgtgcca
     3481 cgacccccgc ggtctcacac cgaaacgatg agattgccga tcgcatcgac ctcgacccgg
     3541 ttccccggct cgaccaccgt cgtgcaatcg agctgctcga cgatcgccgg cccgacgaac
     3601 cgcgcatcga ccggcagccg ctcgcgcaca tagaccggcg tgtcttgcca gcccccgctg
     3661 aaccacaccg gacgcgtcgc tcgcttcgca tcggcgagtg aggcggccgg gcgcgccgca
     3721 gcgatcgcct tcagcgacac cgccttgcgc ttgccgatca ccgcggtgtg gaggttgacc
     3781 agcaccggcc ggatctccgg cagctcgacg ccgaagcgct tccagtaggc cgccgtgaaa
     3841 acggcgcgca gctcggcgac ggtgatcgcg gtcgagtcga tcgccaccgg caggatgtgg
     3901 ctctggccct ggaactgcat gtcggcgcgg tgcagcgtga cgacctgctc gacggcgacg
     3961 ttctcgcgcg cgagcaggct ttggccgctc tcgacctgcg ccgcgaacac ctcggcgatg
     4021 cggccctcgg cgagcgcctc gagcggctgg ttcacggtcg cgacgaagtc atggcgcagg
     4081 tcggcgacga cgcagccgag cgcgttggtg aggcccggcc gcgccgggat cagcagcttc
     4141 gggatggcga gctcgcgcgc gagcgcggcc gcgtgcaacg gcccggcgcc gccgaacgcg
     4201 aacagcgcga agtcgcgcgg gtcgtggccg cgcgccaggc tcaccatgcg gatcgcgccg
     4261 gccatccggt cgttggcgac gcgaacgatc gccgcggcgg ccgcggtcgc gtcgagcccg
     4321 agcgggccgc cgacctgcgc cacgagcgcg gcgcggatcg cgtccatagc gaccgcatgc
     4381 tcgaccgcaa gcaggcgatc cggatcgagc cggccgagcg cgaggttggc gtcggtgatc
     4441 gtcggccggg tgccgccgcg accgtagcag atcggcccgg gtgcggcgcc cgcgctctcc
     4501 gggccgacct tcaacatgcc cgaggcgtcg accgaggcga tcgagccgcc gccggcgcct
     4561 atcgagtgca cgtcgaccat cggcacgtgg atcggcatcg cgtactcgag ctcgaggtcg
     4621 ctcgagaccg aaggctggcc gccgagcacg agcgcgacgt cgctcgaggt accgcccatg
     4681 tcgtaggtga cgacgttgcc gaa
//
LOCUS       DASVHM010000722         3519 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_413352, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000722 DASVHM010000000
VERSION     DASVHM010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3519
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413352"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1384)
                     /locus_tag="VF308_13330"
     CDS             complement(<1..1384)
                     /locus_tag="VF308_13330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437685.1"
                     /translation="MAISRRRVVAGAAAGALAPHLAWAADDGVGTPVAAKVLRYAFEV
                     AETSLDPAKINDLYSRTLTPHIFEGLYTYDHLARPVKIKPLTADGMPQHSDDFRVWTA
                     RVRPGIFFADDPAFKGKRRELVAQDYVYSWKRFADPVNKSPVWSGMETEGYLGLPELR
                     QRVLDEKKPFDYDKEIEGIRAIDRYTIRFTLKEPRPRFDETLAGGDLYGAVAREVVEF
                     YGAEADHPVGTGPFKLVQWRRSSFLALEKNPDFREMFYDVEPAADDAEGQALLARFKG
                     RRLPMVDRVEISIIEEEQPRWLSFVNGEADVAYRVGYQFAPQAMPNGKVAPNLAKKGI
                     RGFPVVEAASNFYLFNMDDPVVGGYSPAQVALRRAISLGIDSKKIIDYAYNGLGTVAQ
                     GPTLPNTTAYDPKLKTECSDYDPARARALLDMYGFVDKNGDGWRERPDGSPLVLRVST
                     QSQARDRKICE"
     gene            complement(1415..3280)
                     /locus_tag="VF308_13335"
     CDS             complement(1415..3280)
                     /locus_tag="VF308_13335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437686.1"
                     /translation="MNASGRPFASDLGRARPRFLALAIALVACVGPVRGASSGAAAEA
                     GAPKVLRYAMRVAETGFDPAQISDLYSSTLVANMFDALYEYEFLARPVRLRPNTATAL
                     PEASADFKTFTIRVRPGIYFSDDPAFKGARRELTAEDYVYSIKRHFDPRWKSPTYTSL
                     NNNRILGLDEVRQAALRDKKPFDYDAPVEGLRALDRYTIQFRLAEPNPRFTDQLSDPA
                     RTGAVAREVVEFYGDKIMEHPVGTGAYRLAQWRRSSLITFDRSPTYRDVFYQEEAPRD
                     DPLAQAATKRLAGRKLPMVDRVEVSVIEQPQPRWLAFVNREMDVIEQVPEDFTYVAIP
                     NNHVAPNLAKQGIYEVRYLRNDAAMSYFAMENPVVGGYSADKVALRRAIALAVNVDEE
                     IRVVRRGQAIPAQSILAPGLWGYDPAFRSEMGTFDRAKAKALLDLYGYVDRDGDGWRD
                     QPDGSPLVLDYATQPDDLNRQLITQWKKNMDAIGVRIVFKTAQWPENLKASRAGKLMM
                     WGVAWSGGPDGEEFLVLGDGPEKGQANHARFDLAEYNRLFRRQRTLADGPERMQVMTR
                     MKEILVAYMPYKAHVHRIWTDLAQPWVLGYHRNVFLREFWRYVDIDPVEKARRTK"
BASE COUNT          518 a         1137 c         1265 g          599 t
ORIGIN      
        1 cttcgcagat cttgcggtcg cgggcttgcg attgcgtcga gacgcgcagc acgagcggcg
       61 atccatcggg ccgctcgcgc cagccgtcgc cgttcttgtc gacaaagccg tacatgtcga
      121 gcagcgcgcg cgcgcgcgcc gggtcgtagt cgctgcactc ggttttcagc ttcgggtcgt
      181 aggcggtcgt gttcggcagc gtcggaccct gcgcgaccgt gccgaggccg ttgtaggcgt
      241 agtcgatgat cttcttcgag tcgatgccga gactgatcgc ccgacgcagc gcaacctggg
      301 cggggctgta gccgccgacc accggatcgt ccatgttgaa caggtagaag ttgctcgccg
      361 cctcgacgac cgggaagccc cggatccctt tcttcgccag gttgggcgcg accttgccgt
      421 tgggcatcgc ctgcggcgcg aactggtagc cgacgcggta ggcgacatcg gcctcaccgt
      481 tgacgaacga gagccagcgc ggctgctcct cctcgatgat cgagatctcg acgcgatcga
      541 ccatcggcag gcggcgcccc ttgaagcgcg cgagcagcgc ctggccttcg gcgtcgtcgg
      601 ccgccggctc cacgtcgtag aacatctcgc ggaagtcggg gttcttctcg agggcgagga
      661 acgagctgcg ccgccactgg acgagcttga acgggccggt gccgacgggg tggtcggctt
      721 cagcgccgta gaactccacc acctcccgcg ccaccgcgcc gtagaggtcg ccccctgcca
      781 gggtctcgtc gaatctcggt ctcggctcct tcagcgtgaa gcggatcgtg tagcggtcga
      841 ttgcccggat gccttcgatc tccttgtcgt agtcgaaggg cttcttctcg tcgaggaccc
      901 tctggcgcag ctccggcagg ccgagatagc cttccgtctc catgcccgac cacaccgggc
      961 tcttgttcac cggatcggcg aagcgcttcc aggagtagac gtagtcctgg gcgacgagct
     1021 cgcgccgctt gcccttgaac gccggatcgt cggcgaagaa gatgccgggc cggacccgcg
     1081 cggtccagac gcggaagtcg tcggagtgct gcggcatgcc gtcggcagtg agcggcttga
     1141 tcttcaccgg acgcgccagg tggtcgtagg tgtagaggcc ttcgaagatg tgcggcgtca
     1201 gcgtgcgcga gtacaggtcg ttgatcttgg ccggatcgag gctcgtctcg gcgacctcga
     1261 aggcatagcg caggaccttt gccgccaccg gggtcccgac gccgtcgtcc gcggcccagg
     1321 ccaggtgcgg agcgagcgcg ccggcggcgg cgccggcaac gactcttcgc cgtgaaatcg
     1381 ccatggtgtc agccctcgct ctcgatcgcc gggctcattt ggttcgccgc gccttctcga
     1441 ccgggtcgat gtcgacgtaa cgccagaact cgcgcaggaa gacgttgcgg tggtagccga
     1501 ggacccaggg ctgtgcgaga tcggtccaga tgcggtgcac gtgcgccttg tacggcatgt
     1561 aggcgaccag gatctccttc atgcgtgtca tgacctgcat ccgctcgggg ccatcggcca
     1621 gggtgcgctg gcgccggaac aggcggttgt actcggcgag gtcgaaccgg gcgtggttgg
     1681 cctggccctt ctcggggccg tcgccgagga cgaggaactc ctcgccgtcg gggccgccgc
     1741 tccaggcgac gccccacatc atcagcttgc cggctcgcga cgccttcagg ttctccggcc
     1801 actgtgcggt cttgaagacg atccggacgc cgatcgcatc catgttcttc ttccactgcg
     1861 tgatgagctg gcggttgaga tcgtccggct gcgtcgcgta gtcgagcacc agcggcgagc
     1921 cgtcgggctg gtcgcgccag ccgtcgccgt cgcggtcgac gtagccgtag aggtcgagca
     1981 gcgccttcgc cttggcccga tcgaaggtgc ccatctcgct gcggaacgcc gggtcatagc
     2041 cccaaaggcc tggcgcgagg atcgactgcg ccgggatcgc ctggccgcgc cggacgacgc
     2101 ggatctcctc gtcgacgttg acggcgaggg cgatcgcccg gcgcaacgcg accttgtcgg
     2161 ccgaatagcc gccgacgacc gggttctcca tcgcgaaata cgacatcgcg gcgtcgttgc
     2221 gcaggtagcg gacttcgtag atcccctgct tggccaggtt gggagcaacg tgattgttcg
     2281 ggatcgccac gtaggtgaag tcttcgggaa cctgctcgat gacgtccatc tcgcggttca
     2341 cgaacgccag ccagcgcggc tgcggctgct cgatcacgct gacctcgacc cgatcgacca
     2401 tcggcagctt tctgccggca agccgcttcg tcgcggcctg ggcgagcggg tcgtcgcgcg
     2461 gcgcctcctc ctggtagaag acgtcgcggt aagtcgggct cctgtcgaag gtgatcagcg
     2521 agctgcggcg ccactgggcg agccggtagg cgccagtgcc gaccgggtgc tccatgatct
     2581 tgtcgccgta gaactcgacc acctcgcgcg cgaccgcgcc ggtgcgcgcc ggatcgctca
     2641 gctggtcggt gaagcgcggg ttcggctcgg caagcctgaa ctggatcgtg tagcgatcga
     2701 gcgcgcgcag gccctcgacc ggcgcgtcgt agtcgaacgg cttcttgtcg cgcagggcgg
     2761 cctggcgcac ttcgtcgagg ccgaggatgc ggttgttgtt gaggctggtg taggtcgggc
     2821 tcttccagcg cggatcgaaa tggcgcttga tcgaatagac atagtcctcg gcggtgagct
     2881 cgcgacgcgc gcccttgaag gcgggatcgt cgctgaagta gatgccggga cggacgcgga
     2941 tcgtgaaggt cttgaagtcg gccgacgctt ccggcagcgc cgtcgccgtg ttcggcctga
     3001 ggcgtaccgg gcgggcgagg aattcgtact cgtagagcgc gtcgaacatg ttcgcgacga
     3061 gcgtgctcga gtagagatcg gagatctgcg ccggatcgaa gccggtctcg gcgactcgca
     3121 tcgcatagcg gaggaccttc ggcgcgccgg cctcggccgc cgcgcccgac gaggcgccac
     3181 gcaccggccc gacgcaggcg acgagcgcga tggcgagggc gaggaagcgc gggcgagcgc
     3241 gcccgaggtc ggatgcaaag gggcgaccgg aagcgttcac gggcggtgtc gacggcggca
     3301 ggtttggcgg gccaggacgg cggcgcgggc caaagggcga gtgtaggtgc gcggcgcgcg
     3361 acttgcggcg ggcggcggcc gggcaaacgc ggtggggccg cagcgtcgcg aggccctaga
     3421 ctcccggcgc gctcccttcg gagccgacgg tgcgggcgtg tcacgagcac gggacccgcc
     3481 gcaagactga cttcgacgag gagtgttcgg gcgatggcc
//
LOCUS       DASVHM010000723         4811 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_338797, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000723 DASVHM010000000
VERSION     DASVHM010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4811
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338797"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VF308_13340"
     CDS             complement(<1..285)
                     /locus_tag="VF308_13340"
                     /inference="COORDINATES: protein motif:HMM:NF016060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEX7437687.1"
                     /translation="MRRFVRYSTIGALATATHYLVLVLCVEGGGWAAWVASGLGAVIG
                     AQVAYFGNRRYTFAHRGAFAGSSSTRSSGCGRCRGCATRAMCSARVSVSSA"
     gene            complement(311..1858)
                     /locus_tag="VF308_13345"
     CDS             complement(311..1858)
                     /locus_tag="VF308_13345"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEX7437688.1"
                     /translation="MDRGREGVGGEGGLSGATAARRSWHGRLRSTPGLLALLALWLVC
                     TAGLRPLLLPDEGRYASVALEMLHGDPLVPTLNGLPFFHKPPLLYWLDMAAMQVFGVT
                     AFAARFASLVGAWLMGAALFLALRRWYGAGTARLALGVLATCPFFFLAAQYANHDMLV
                     AGLVSVAVLCFVRALEDAPKPALGWLVGAWAACGFALLAKGLIGIVLPALVVGPWLIA
                     QRRWRDLARLLHPLGLLAFVAVAGPWLATMQSRYPGFFDYFIVEQHFRRYAQTNFNNA
                     HPFWFFVVVLPLLTLPWSGWLALRARRVAAARGPMLGLLAWWVLAVVGFFSLPSSKLV
                     GYVLPALVPWCALTALAIATPSFPERRFRVVIAGAALLCAGVVVALAWAAPNSNRAAA
                     LALAARMAPGDKVAMVDEYFFDVPFYARLSEPVLIASDWSDPDIPNRDNWRKELFDAA
                     RFDPAKGRAVLWPIARLDALSCGPHAVWFVVKVGAGTALQRVSGAVMAYADARTELWR
                     APARTCA"
     gene            complement(1816..2823)
                     /locus_tag="VF308_13350"
     CDS             complement(1816..2823)
                     /locus_tag="VF308_13350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013517437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HEX7437689.1"
                     /translation="MHTVRRRFLVCAGAIAALLPPALLAQTATSGAWPSKPVRIIVPF
                     SPGGTTDILARALAPELGKAFGQTFIVDNRPGAGGNLGADLVAKSAPDGYTLLMGTVG
                     TQSINAALYPKMPFDPVRDLAPITLMAGVPNVLVMNPAKAQAYGIASVPDLIRYAKAH
                     PGKLNMASSGNGTSIHLSGELFKSMTGTYMLHFPYRGSGPALLDLIGGTMDLMFDNLP
                     SALPQIKAGKLTALAVTSAQRSAALPNVPTVAEAGPIKGFEASSWFGLLAPAGTPPDI
                     INRIQQEAAKALGTPALKERLLSQGAIPSGMTPAEFTRFIAAETKKWTEVVKVSGAKV
                     D"
     gene            complement(3048..3209)
                     /locus_tag="VF308_13355"
     CDS             complement(3048..3209)
                     /locus_tag="VF308_13355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437690.1"
                     /translation="MPRHPIQQLVTLRALPQRPRALQPGRALGPLKILQSNRSPVQLS
                     LFERPPAGR"
     gene            complement(3474..>4811)
                     /locus_tag="VF308_13360"
     CDS             complement(3474..>4811)
                     /locus_tag="VF308_13360"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HEX7437691.1"
                     /translation="VQHLRLSARQARVRAEDLLNEVGLPEPKRRLRAYPHELSGGQQQ
                     RVMIAMALACGPRLLIADEPTTALDVTVQRQILELLARLKERHRMSMLFISHDLGVVG
                     EIADHVVVMRQGTVREQGPVAGIFSDPRDAYTRALLACRPTLEQRAPRLMVIDDHLSG
                     LARTRTAVTKDPNAPVIVEAKALSKSFWIRSGMFGRKEFRAVKGATFHLRRGHTLGIV
                     GESGSGKTTLGLALLRLHDPNGGRVGGQAIFDGRDLLALSRREMLPIRRRIQVVFQNP
                     YASLNPRFTVAQTLVEPMAIHAIGRDSADREARARALLARVGLDDTALNKYPHEFSGG
                     QRQRIAIARCLTLDPEVLVLDEAVSALDVSVQAQVLNLLKDLQDELGLAYIFISHDLA
                     VVRFMADEVLVMKDGEIVEQASAEEILERPQQEYTRRLIGAIPRGWVGAAARA"
BASE COUNT          793 a         1624 c         1754 g          640 t
ORIGIN      
        1 cgcgcttgag accgaaaccc gggccgagca catggcccgt gttgcgcacc cccggcatcg
       61 gccgcagccg ctcgaccgcg tcgaggacga cccggcgaac gcgccgcggt gcgcgaaggt
      121 atagcgccgg ttgccgaaat aggccacctg cgcgccgatc acggcgccca gccccgacgc
      181 gacccaggcc gcccagcccc cgccttcgac gcagagcacg aggacgaggt agtgcgtggc
      241 ggtggcgagc gcgccgatgg tgctgtagcg aacgaagcgt cgcatgcgag cgcgtgacga
      301 tcgtgcgcaa tcaggcgcag gtgcgcgccg gtgcgcgcca gagctcggtg cgcgcgtcgg
      361 cataggccat caccgcgccg ctgacgcgct gcagggccgt gccggcgccc accttgacca
      421 cgaaccagac cgcgtgcggc ccgcacgaca gcgcgtcgag ccgcgcgatc ggccagagga
      481 cggcgcggcc tttcgccgga tcgaagcggg cggcgtcgaa cagctccttg cgccagttgt
      541 cgcgattcgg gatgtcgggg tcggaccagt cgctcgcaat cagcaccggt tcggaaagcc
      601 gcgcgtagaa cggaacgtcg aagaagtact cgtcgaccat cgcgaccttg tcgcccggcg
      661 ccatccgcgc ggcgagcgcc agcgccgcgg cgcggttcga gttcggtgcg gcccacgcca
      721 atgcgacgac gacgccggcg cacagcagcg cagcgccggc gatcacgacg cgaaatcggc
      781 gttcaggaaa ggacggcgtc gcgatcgcca gcgcggtcaa ggcgcaccac ggcacgagcg
      841 ccggcagcac gtagccgacc agcttcgagc tcggcagaga aaagaacccg accacggcga
      901 gcacccacca ggcgaggaga ccgagcatcg ggccgcgcgc cgcggcgacg cggcgcgcgc
      961 gcagtgccag ccagccgctc cacggcagcg tgagcagggg cagcacgacg acgaagaacc
     1021 agaacggatg ggcgttgttg aaattggtct gggcgtagcg gcggaaatgc tgctcgacga
     1081 tgaagtagtc gaagaagccc ggatagcgcg attgcatcgt cgccagccat ggcccggcga
     1141 ccgccacgaa ggcgagcagc ccgagcgggt gcagcagccg tgccaggtcg cgccagcggc
     1201 gctgcgcgat gagccacggg ccgacgacga gggccggcag cacgatcccg atcagcccct
     1261 tggcgagcag cgcgaagccg caggcggccc aggcgccgac gagccatccg agcgcaggct
     1321 tgggcgcgtc ttcgagggcg cgcacgaagc acagcaccgc gacgctgacc agccccgcga
     1381 ccagcatgtc gtggttcgcg tactgggccg cgaggaagaa gaacggacag gtcgcgagca
     1441 caccgagggc caggcgcgcg gtgccggcgc cgtaccagcg ccgcagcgcc aggaagaggg
     1501 ccgcgcccat cagccaggcc ccgaccagcg aggcgaagcg cgccgcgaac gcggtcacgc
     1561 cgaagacctg catcgccgcc atgtcgagcc agtacaggag cggcggcttg tgaaagaacg
     1621 gcagcccgtt cagggtcggc acgagcgggt cgccgtgcag catctcgagc gccaccgagg
     1681 cgtagcgccc ttcgtcgggc aggagcagcg ggcgcaggcc cgcggtgcaa acgagccaga
     1741 gcgcgaggag ggccagcaga cccggggtcg atcgcagccg gccgtgccag gaccggcgcg
     1801 cagcggtcgc gccgctcagt ccaccttcgc ccccgacacc ttcacgacct cggtccattt
     1861 cttcgtctcg gcagcgatga agcgggtgaa ttcggccggc gtcatgccgc tcggaatggc
     1921 accctgggag agcaagcgct ccttcaacgc cggcgtcccg agcgccttgg cggcctcctg
     1981 ctggatccgg ttgatgatat cgggcggcgt gccggcgggc gccaggagac cgaaccagga
     2041 gctcgcctcg aagcccttga tcggtccggc ctcggcgacc gtcggcacat tgggcagcgc
     2101 ggcgctgcgc tgcgcgctcg tgaccgcgag cgcggtcagc ttgccggcct tgatctgcgg
     2161 cagcgccgaa ggcaggttgt cgaacatcag gtccatcgtg ccgccgatca ggtcgagcag
     2221 cgcagggccc gaaccgcgat acggaaagtg cagcatgtag gtgccagtca tgctcttgaa
     2281 gagttcgccg ctcaggtgga tcgaggtgcc gttgccactc gatgccatgt tgagcttgcc
     2341 gggatgcgcc ttcgcatagc ggatcaggtc gggcacgctg gcgatgccgt aggcctgggc
     2401 cttggccggg ttcatcacga gcacgttcgg aaccccggcc atcagcgtga tcggcgccag
     2461 gtcgcgaacc ggatcgaacg gcatcttcgg atagagcgcc gcgttgatcg actgcgtgcc
     2521 gaccgtgccc atcagcagcg tatagccgtc gggcgccgac ttcgcgacca ggtcggcgcc
     2581 gaggttgccg cccgcgcccg gccggttgtc gacgatgaag gtctggccga aggccttgcc
     2641 gagttcgggc gcgagcgcgc gggcgaggat gtcggtcgtg ccgcccgggc tgaacggcac
     2701 gatgatgcgc accggcttcg acggccatgc gccggaggtc gcggtctgtg cgaggagcgc
     2761 tggcggcagc agcgccgcga tggcgccggc gcaaacgagg aagcggcggc gaaccgtgtg
     2821 catggcgaga ccttggcgcg tggacgaagg cgcagtgtcg cgcagcttgg cgcgacgccc
     2881 gagagggctt gcccgaagct gtctcggcag gtcggaggtg accgtgtgcg gcgcgcggcc
     2941 ggcgccgtga aaaaaaggag gggagcggga caggatgcgg aggtgcgctc tcgaatcacc
     3001 cctgcgtgcc cgcccccttg gacgtcggtc agtcctcgaa aacgggctca gcggccggcc
     3061 ggcgggcgct cgaacaggga caactgcacc gggctccggt tggattgcag gatcttgagc
     3121 gggccaaggg cgcgtcccgg ttgcaatgcg cgcgggcgct ggggcagcgc gcgaagggtg
     3181 acgagttgct ggatcggatg gcgtggcatg gcgagagagg gtgcctcgga aagggacgcg
     3241 tcgagcaagt ccgggcgcgg ctgtaacgaa actgttttag tgtgacccgc agagcctgca
     3301 ccgcaacctc catgccatgg cagccgggcg tgaaattcgg cacgaaggtg cgcgccctcg
     3361 cgcgccgaaa atgcgcgctt cgggtgacga accgccacac ccgatttgcg acttgttaca
     3421 gccctgtccg gttgcgtcgg ccggcgcgcc gcgcggcgcg aacggcgcag cgctcaggcc
     3481 cgcgccgccg cgccgaccca accgcgcgga atggcgccga tcaggcgccg cgtgtactcc
     3541 tgttgcggcc gctcgaggat ctcttcggcg ctcgcctgct cgacgatctc gccgtccttc
     3601 atgaccagca cctcgtcggc catgaagcgc accacggcca ggtcgtggct gatgaagatg
     3661 taggccaggc cgagctcgtc ctgcaaatcc ttcaggaggt tgagcacctg ggcctgcacc
     3721 gagacgtcga gtgcgctcac cgcctcgtcg agcaccagca cttcggggtc gagggtcagg
     3781 cagcgggcga tggcgatgcg ctggcgctgg ccgccggaaa actcgtgcgg gtatttgttc
     3841 agggccgtgt cgtcgagccc gacccgcgcg agcagggcgc gcgcccgcgc ctcgcggtct
     3901 gcagagtcgc ggccgatggc gtggatcgcc atcggctcga ccagcgtctg cgccaccgtg
     3961 aagcgcgggt tcaacgacgc atacggattc tggaacacga cctggatgcg gcgccggatg
     4021 ggcagcatct cgcggcgcga gagcgcgagc aggtcgcgac cgtcgaagat cgcctgcccg
     4081 cccacccggc caccgttcgg gtcatgcagg cgcaacagcg ccaggcccag cgtcgtcttg
     4141 cccgagccgg attcgccgac gatgccgagc gtgtggcctc ggcgcaggtg aaaggtcgcg
     4201 cccttcacgg ccctgaactc cttgcgaccg aacatgccgc tgcggatcca gaagctcttc
     4261 gacagcgcct tcgcttccac gatcaccggc gcgttcggat ccttggtcac cgcggtccgg
     4321 gttcgggcga gaccggacag gtggtcgtcg atgaccatca ggcgtggcgc gcgctgctcc
     4381 agcgtcggcc ggcaggcgag cagggcgcgg gtgtaggcgt cgcgcggatc ggagaagatg
     4441 ccggcgaccg ggccctgttc gcgcaccgtg ccctgcctca tcacgacgac atggtcggcg
     4501 atctcgccga cgacgccgag gtcgtggctg atgaagagca tgctcatgcg atggcgctcc
     4561 ttcagccgcg ccagcaactc gaggatctgg cgctgcaccg tcacgtcgag ggccgtcgtc
     4621 ggttcgtcgg cgatcaggag ccgcggtccg caggccagcg ccatcgcgat catcacgcgc
     4681 tgctgctgtc cgcccgagag ctcgtgcggg taggcgcgca ggcgccgctt cggttcgggc
     4741 aggccgacct cgttcaacag gtcttcggcc ctgacccggg cctggcgtgc ggagagccgc
     4801 aggtgctgga c
//
LOCUS       DASVHM010000724         1572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1279399, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000724 DASVHM010000000
VERSION     DASVHM010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1279399"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..474
                     /locus_tag="VF308_13365"
     CDS             <1..474
                     /locus_tag="VF308_13365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437692.1"
                     /translation="LMEVLEKQAFEQFTQSNQTEMGDSTPEETRWLVMFPKIPMSGSK
                     LLRASFGGVSSLPNEGPAWLEGPLGHALERAAGTLLRLEPPFVLMTLRGRLYLRMQLA
                     SADETDVAAALALFETAGTEAQRVGRSRGDVPVTWSQTVTTAWQNLAPPGKKRQG"
     gene            complement(564..>1572)
                     /locus_tag="VF308_13370"
     CDS             complement(564..>1572)
                     /locus_tag="VF308_13370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7437693.1"
                     /translation="DSELGAGLTNLEYAPICEIMGRFPLTGEAMNCSAPDTGNMETIE
                     RYGSAELKHQWLEPLLDGKIRSAFAMTEPGVASSDATNIEASIARQGDDYVINGRKWW
                     TSGAGDPRCKVYIFMGKTDLDAPRHSQQSMVVVPAETKGITVVRPLSVFGYDDAPHGH
                     MEVLFENVRVPTSNILLGEGRGFEIAQGRLGPGRIHHCMRLVGLAERALELMCRRASS
                     RVAFGRTIAEQGVTRERIAEARCSIDMARLLTLKAAWMMDVAGNKAAKAEIAMIKVVA
                     PNMACQVIDWAMQVHGGGGVSGDFPLAHHYASARTLRFADGPDEVHRNAIAKIELGKH
                     A"
BASE COUNT          230 a          551 c          541 g          250 t
ORIGIN      
        1 ctgatggaag tgctcgagaa gcaggccttc gagcagttca cccagagcaa ccagaccgag
       61 atgggcgact cgacgccgga agagacgcgc tggctggtca tgttcccgaa gatcccgatg
      121 agcggctcga agctcctgcg cgccagcttc ggcggtgtct cgagcctgcc caacgaaggg
      181 ccggcctggc tcgaggggcc gctcggccac gccctcgaac gggcggcagg caccttgctc
      241 cggctcgagc cgccgttcgt gctgatgacc ttgcgcggcc gcctctacct gcgcatgcag
      301 ctcgcgagcg ccgacgagac cgacgtcgcg gccgcgctgg ccctgttcga gaccgccggc
      361 accgaagcgc agcgcgtcgg ccgctcgcgc ggcgacgtgc cggtgacctg gtcgcagacc
      421 gtcacgaccg cctggcagaa cctcgcgccg ccgggcaaga agcgacaggg ctgagccgcg
      481 cgggaactgt cgttccgggc cgagcgaaga atctcgtcgc cgctgcgcga tccttcgctt
      541 cgctcaggac gaccgcgccg ccctcaggcg tgcttgccga gttcgatctt ggcgatcgcg
      601 ttgcggtgca cttcgtcggg gccgtcggcg aagcgcagcg tgcgcgccga ggcgtagtga
      661 tgggcgagcg gaaagtcgcc cgagacgccg ccgccaccgt gcacctgcat cgcccagtcg
      721 atcacctggc aggccatgtt cggcgccacg accttgatca tggcgatctc ggccttggcc
      781 gccttgttgc cggccacgtc catcatccac gcggccttga gcgtcaacag gcgcgccatg
      841 tcgatgctgc agcgcgcttc ggcaatgcgc tcgcgcgtca cgccctgctc ggcgatggtc
      901 cggccgaagg cgacgcggct cgaagcgcgc cggcacatca gctcgagcgc ccgctcggcc
      961 aggccgacca ggcgcatgca gtgatggatc cgccccggcc cgagccggcc ctgggcgatc
     1021 tcgaagccgc ggccctcgcc gagcaggatg ttcgaggtcg gcacgcgaac gttttcgaac
     1081 agcacttcca tgtggccgtg cggcgcgtcg tcgtagccga acacggagag cgggcgcacg
     1141 accgtgatgc ctttcgtttc ggccggaacc accaccatcg actgctgcga atggcgcggc
     1201 gcgtcgagat cggtcttgcc catgaagatg tagaccttgc agcgcgggtc gccggcgccg
     1261 ctggtccacc acttgcggcc gttgatgacg tagtcgtcgc cctgccgcgc gatgctcgct
     1321 tcgatgttgg tcgcgtccga cgacgcgacc ccgggctcgg tcatggcgaa ggcgctgcgg
     1381 atcttgccgt cgagcagcgg ctcgagccac tggtgcttga gctcggccga gccgtagcgc
     1441 tcgatcgtct ccatgttgcc ggtgtcgggc gccgagcagt tcatcgcctc gccggtcagc
     1501 gggaagcgcc ccatgatctc gcagatgggc gcgtactcga ggttggtgag gcccgcgccc
     1561 agttccgaat cg
//
LOCUS       DASVHM010000725         1805 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1353239, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000725 DASVHM010000000
VERSION     DASVHM010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1353239"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1805
                     /locus_tag="VF308_13375"
     CDS             <1..>1805
                     /locus_tag="VF308_13375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018315130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX7437694.1"
                     /translation="YHLKNNHIVEVTGRDGPANRSRLCVKGRYGLDYVRHRQRLTKPL
                     IRRAGIAKTPDFTVDPDRLHEVFREASWDEALAFAAGKLKAIRDVHGGDALAGFGSAK
                     GSNEEAYLFQKLVRTGFRSNNVDHCTRLCHASSVVALLEGIGSGAVSNPVMDVAKAEV
                     VIIIGANPSVNHPVASSWIKNAAHNGTKLILCDPRRSELTRHAHRFLQFKPDTDVALL
                     NAMMHVIVAEDLVDAAFIASRTIGYDELRANVAAYSPEAMAPICGIDAETIRYVARLY
                     ATSRASMILWGMGISQHVHGTDNARCLIALSLMTGQIGRPGTGLHPLRGQNNVQGASD
                     AGLIPMMFPDYQHVSSAAVRSRFEGAWGLAAGTLDERPGLTVVEVMHSIKAGGVRGMY
                     VMGENPAMSDPDANHARESLALLEHLVVQDIFFTETAYLADVILPASAFPEKTGTFTN
                     TDRLVQMGRQAIDPPGDARQDLWIIQQIARRMGLPWRDDPASVVFDEMRHTMPSIAGI
                     TWERLEREHAVTYPCTKEGDPGDPVVFTDTFPREGGKARFVPADIISADERPDAEYPM
                     VLITGRQLEHWHTGAMTRRASVLDAIEPVPVASLHP"
BASE COUNT          315 a          644 c          580 g          266 t
ORIGIN      
        1 tatcacctca agaacaatca tattgtcgag gtgaccgggc gcgatgggcc ggccaatcgc
       61 agccggctct gcgtcaaagg tcgttacggc ttggactacg tgcggcatcg gcaacgcttg
      121 accaagccgc tgatccgccg cgcgggaatt gcgaagaccc ccgatttcac cgtcgacccc
      181 gatcgcctgc acgaggtatt tcgcgaagca agttgggacg aagcgctagc cttcgcggcc
      241 ggcaaactca aggcgatccg cgatgtacac ggcggcgatg cactcgccgg cttcggctcg
      301 gccaagggca gcaacgaaga ggcctacctg ttccagaagc tggtgcgaac cggctttcgc
      361 agcaacaacg tcgaccactg cacacgccta tgccatgcgt cgagcgtcgt cgcgctgctc
      421 gaaggaatcg gctcgggcgc ggtctcgaac ccggtgatgg acgtcgccaa ggccgaggtc
      481 gtcatcatca tcggcgccaa tccgagcgtg aaccacccgg tcgcgtcgag ctggatcaag
      541 aacgccgccc acaacggcac caagctgatc ctgtgcgacc cgcgccgctc tgagctgacg
      601 cgccacgcgc atcgcttcct gcagttcaag cccgacaccg acgtcgcgct gctcaacgcg
      661 atgatgcacg tcatcgtcgc cgaggatctc gtcgacgccg cgttcatcgc cagccggacc
      721 atcggctacg acgagctgcg cgccaacgtc gccgcctaca gcccggaggc gatggcgccg
      781 atctgcggca tcgacgccga gacgatccgc tacgtcgcgc gcctgtacgc gacgtcgcgc
      841 gcgtcgatga tcctctgggg catgggcatc tcgcagcacg tccacggcac cgacaacgcg
      901 cgctgcctga tcgcgctctc gctgatgacc gggcagatcg gccgccccgg caccgggctg
      961 cacccgctgc gcggccagaa caacgtccag ggcgcgtccg acgcgggcct gatcccgatg
     1021 atgttccccg actaccagca cgtgtcgagc gccgccgtgc gctcgcgctt cgaaggcgcg
     1081 tggggcctgg ccgcggggac gctcgacgag cgtcccggcc tgacggtggt cgaggtcatg
     1141 cactcgatca aggccggcgg cgtgcgcggc atgtacgtga tgggcgagaa cccggcgatg
     1201 tcggaccccg acgcgaacca tgcgcgcgag tcgctcgcgc tgctcgagca cctcgtcgtc
     1261 caggacatct tcttcaccga gacggcgtac ctggccgacg tgatcctgcc ggcgagcgcc
     1321 ttccccgaga agaccggcac ctttaccaac accgatcgcc tcgtgcagat gggccggcag
     1381 gcgatcgacc cgcccggcga cgcgcgccag gacctctgga tcatccagca gatcgccagg
     1441 cgcatggggc tgccgtggcg cgacgacccg gcctcggtcg tgttcgacga gatgcgccac
     1501 acgatgccga gcatcgccgg catcacctgg gagcggctcg agcgcgagca tgccgtcacc
     1561 tatccgtgca cgaaggaagg cgacccgggc gacccggtcg tcttcaccga caccttcccg
     1621 cgcgagggcg gcaaggcccg tttcgttccg gccgacatca tcagcgccga cgagcgcccc
     1681 gacgccgagt acccgatggt gctgatcacc gggcggcaac tggaacactg gcataccggc
     1741 gcgatgacgc gtcgggccag cgtgctcgac gcgatagagc cagtcccggt ggcgtcgctg
     1801 catcc
//
LOCUS       DASVHM010000726         2236 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_556785, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000726 DASVHM010000000
VERSION     DASVHM010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_556785"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            146..1639
                     /locus_tag="VF308_13380"
     CDS             146..1639
                     /locus_tag="VF308_13380"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEX7437695.1"
                     /translation="MASPSLPAPAGLDDPRLLPAGTRLDEFEILRPLGVGGFGIVYLA
                     LDHSLLRQVALKEFMPGELAARGPAGIVRPRSAHCAEQFQRALESFFKEARLLAPFNH
                     PALVRVYRFWKANGTAYMAMQYCPGVTLAQARRTMRAPPDEAWLRAFVEPILDALERL
                     HRAGVFHRDISPDNILLLPNGRPILLDFGSARRVAGAGTKSLTAVLKPNFAPVEQYGD
                     SAGMAQGPWTDLYALGATVHFMLTGEAPMPAVMRVVDDVRTPLAAAGGAAFPGVGARF
                     LAAIDWTAAVAPKDRPQSVAALRQALGDDPRRKPPPTATPRMKQPRRRVLVAWVLAAL
                     GALGVGAWTVVSTTATSAASAPPPSVPAPAPAPRVAPAPIAAAAPSPAVVHATPVSAP
                     VAPEAAQAMAAAAKPDEASSPAKRPERPKRLPAAAKSMPAAAPTSPGTEATARGAQSP
                     AEACSGRNFISRAICLSRQCQAAGSRMHPECVDARRIEEQRQRRMDR"
     gene            complement(1662..2141)
                     /locus_tag="VF308_13385"
     CDS             complement(1662..2141)
                     /locus_tag="VF308_13385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004632246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX7437696.1"
                     /translation="MISKNTICLWYDHDAEDAAKFYAATFPDSKVGAVRRAPADYPSG
                     KKGDVLTVEFTVAGIPCIGLNGGPAFKHSEAFSFQIATDDQAETDRLWNAIVNNGGQE
                     SACGWCKDRWGLSWQITPRALTAGMADPDPAVNKRVFEAMMKMKKIDVAAIEAARRG"
BASE COUNT          310 a          823 c          764 g          339 t
ORIGIN      
        1 catgccgtgc ggaaaggcag tcggacgttt cgttacgaat gcacgaggcc cggacgcacc
       61 gaccttgccg cccgagcctg cccttcagaa cggtgcaccc cggccgatga aagagcaacg
      121 tgcctgatca acccccgtga cgcacgtggc atctccttcg ctcccggcgc cagcggggct
      181 cgacgacccc cgcctgctgc ccgccggaac gcgtctcgac gagttcgaga tcctgcgacc
      241 gctcggcgtc ggcggcttcg ggatcgtcta cctcgcgctc gaccattcgc tgctgcgcca
      301 ggtcgcgctc aaggagttca tgcccgggga gctggccgcg cgcggcccgg ccggcatcgt
      361 caggccccgc tcggcccact gtgccgagca attccagcgc gcgctcgagt cgttcttcaa
      421 ggaggcgcgc ctgctggctc ccttcaacca tcccgcgctg gttcgcgtct accggttctg
      481 gaaggcgaac ggcacggcct acatggcgat gcagtactgc cccggcgtca ccctcgcgca
      541 ggcgcgcagg accatgcgcg ccccgcccga cgaggcctgg ctgcgcgcct tcgtcgagcc
      601 gatcctcgac gcgctcgagc ggctgcaccg cgcgggcgtg ttccaccgcg acatctcgcc
      661 cgacaacatc ctgctgctgc ccaacggccg gccgatcctg ctcgacttcg gctccgcgcg
      721 ccgtgtcgcc ggtgcgggca cgaagtcgct gaccgccgtg ctcaagccca acttcgcgcc
      781 ggtcgagcag tacggcgact cggccggcat ggcgcaaggc ccgtggaccg atctctatgc
      841 gctcggggcg acggttcact tcatgctcac gggcgaggcg cccatgccgg ccgtgatgcg
      901 cgtcgtcgac gatgtgcgca caccgctcgc ggccgcgggc ggcgcggcat ttccgggcgt
      961 gggagcgagg ttcctcgcgg ccatcgactg gaccgcggcc gtcgcgccga aggatcgacc
     1021 gcaaagcgtc gcggcgctgc gccaggccct cggcgacgac ccgcgacgca agccgccgcc
     1081 gactgccacg ccgcgcatga agcagcctcg gcggcgcgtg ctcgtggcgt gggtgctggc
     1141 ggctttgggc gcgctcggcg tcggtgcctg gacggtcgtc tcgacgacgg cgacgtcggc
     1201 tgcgtctgcg ccaccgccga gcgtgccggc gccggcgccg gcgccgcgcg tcgcgcccgc
     1261 gccgattgcc gcagccgcgc cttcgccggc ggtggtccac gcgacgccgg tgtcggcgcc
     1321 cgtcgcgccc gaggcggcgc aggcgatggc ggccgcggcg aagcccgacg aggcgtcctc
     1381 gcccgcgaag cgacccgagc ggccgaagcg actgcccgct gccgcgaagt cgatgccagc
     1441 ggccgcgccg acatcgcccg ggacggaggc gaccgcccgc ggggcgcaga gccccgccga
     1501 agcctgcagc ggccgcaact tcatctcacg cgcgatctgc ctcagccggc aatgccaggc
     1561 ggcaggctcg cgcatgcacc ccgaatgcgt cgacgcgcga aggatcgagg agcagcggca
     1621 gcgccggatg gaccgctgag cgcgcagcgt gggacgctcc gctaaccccg ccgcgctgcc
     1681 tcgatcgcgg cgacgtcgat cttcttcatt ttcatcatcg cctcgaacac gcgcttgttc
     1741 accgcgggat cggggtcggc catccctgcg gtgagggcgc gtggggtgat ctgccaggaa
     1801 aggccccatc tgtccttgca ccagccgcac gcgctctcct ggccgccgtt gttgacgatc
     1861 gcattccaca ggcggtcggt ctcggcctga tcgtcggtcg cgatctggaa cgagaacgcc
     1921 tcgctgtgct tgaacgccgg tccgccgttg aggccgatac aggggatgcc ggccacggtg
     1981 aactcgaccg tgaggacatc gcctttcttg ccgctgggat agtcggcagg tgcgcggcga
     2041 acggcaccga ccttgctgtc gggaaaagtt gcggcataga acttcgccgc atcttcggca
     2101 tcgtggtcgt accacaggca gatcgtgttc ttgctgatca tgtcgagttc tcctagcgag
     2161 tggaatcgag ccgcagctcg cgccgcagct ccgggaacac cttgccgacc ttgccgagca
     2221 ggtagtcgcc gtaagt
//
LOCUS       DASVHM010000727         2046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_267877, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000727 DASVHM010000000
VERSION     DASVHM010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267877"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..450)
                     /locus_tag="VF308_13390"
     CDS             complement(<1..450)
                     /locus_tag="VF308_13390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019576958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7437697.1"
                     /translation="MSPPAPATVEVQGVSVVYPAREHTVTALDDVSLIIREGEFVSLI
                     GPSGCGKTTLLRVIADLEQVTSGVVRVNGLSSREARLARAYGYVFQAPALFPWRTVLA
                     NVCLPLEIHGIAKNEARSTALAHLERVGLQGFEGKYPWQLSGGMQQRV"
     gene            complement(465..1772)
                     /gene="preA"
                     /locus_tag="VF308_13395"
     CDS             complement(465..1772)
                     /gene="preA"
                     /locus_tag="VF308_13395"
                     /EC_number="1.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010462186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017113 - dihydropyrimidine dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0006210 - thymine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006212 - uracil catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
                     /protein_id="HEX7437698.1"
                     /translation="MADLSTTFAGIRSPNPFWLASAPPTDKEYNVVRAFEAGWGGVVW
                     KTLGEAGPPIVNVNGPRYAALYSQDRRLIGFNNIELITDRPLETNLDEIARVKRNWAD
                     RAVVVSIMVPCEEQAWKAILPRVEDTGCDGIELNFGCPHGMNERGMGSAVGQVPEYIE
                     MVTRWCKQYTRLPVIVKLTPNVADIKPPALAAQRGGADAVSLINTINSVMGVDLDTLL
                     ISPNTGGTGSHGGYCGPSVKPIALNMVAEIARAQATARLPISGIGGISTWKDAAEFIA
                     LGCGNVQVCTAAMTYGFKIVEDLCDGLSEYMDSKGFGSIEDFRVRAVPSIVDWNQLNL
                     NHIEKARIDQDACIQCGRCHVVCEDTSHQAITALRDGKRHFEVTDAECVGCNLCVSVC
                     PVPGCITMHALHPGETDPRTGRVVDGGYANWTTHPNNPLRVTA"
     gene            complement(1819..>2046)
                     /locus_tag="VF308_13400"
     CDS             complement(1819..>2046)
                     /locus_tag="VF308_13400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019576967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7437699.1"
                     /translation="PTLTTLALRGGRIEVDAEGRTSLAKVWAGGDCTFGGQDLTVEAV
                     EHGKIAAHSIDRSLGMVRSGAPFERVRRAAA"
BASE COUNT          310 a          682 c          708 g          346 t
ORIGIN      
        1 cacgcgctgc tgcatgccgc ccgacaactg ccatgggtac ttgccctcga agccttgcag
       61 gccgacgcgt tcgaggtggg cgagcgcggt gctgcgcgcc tcgttcttgg cgatgccgtg
      121 gatctcgagc ggcaggcaga cgttggccag cacagtgcgc cacgggaaga gcgccggcgc
      181 ctggaacacg tagccatagg cgcgcgccag tcgtgcctcg cgcgagctga ggccgttgac
      241 gcgcaccacg cccgaggtga cctgctcgag atcggcgatc acgcgcagca acgtggtctt
      301 gccgcagccc gacggaccga tcagcgagac gaattcgcct tcccggatga tcaggctgac
      361 gtcgtcgagc gccgtgacgg tgtgttccct ggcgggatag acgaccgaga ccccctggac
      421 ttcgacggtg gcgggcgcag ggggggacaa gggcgggccc gggttcaggc ggtcacccgc
      481 agcgggttgt tcggatgcgt ggtccagttc gcgtagcctc cgtctactac ccgcccggtg
      541 cgcggatcgg tctcgcccgg gtgcagcgcg tgcatcgtga tgcagccggg gacagggcag
      601 accgagacgc acaggttgca gccgacgcat tcggcgtcgg tcacctcgaa gtggcgtttg
      661 ccgtcgcgca gcgccgtgat ggcctggtgc gaggtgtctt cgcagaccac gtggcagcgg
      721 ccgcactgga tgcatgcatc ctggtcgatc cgggccttct cgatgtggtt caggttcagc
      781 tggttccagt cgacgatgga cggcaccgcg cggacgcgga agtcttcgat gctcccgaat
      841 cccttgctgt ccatgtactc cgacaaaccg tcgcacaggt cctcgacgat cttgaaaccg
      901 taggtcatcg cggcggtgca cacctgcacg ttgccgcagc ccagcgcgat gaattcggcc
      961 gcgtccttcc aggttgagat gccgccgatg ccggagatcg gcagccgcgc ggtcgcctgc
     1021 gcgcgcgcga tctcggccac catgttcagc gcgatcggct tgaccgaggg gccgcagtag
     1081 ccgccgtgcg agccggtgcc accggtgttc ggcgagatca gcagcgtgtc gagatctacg
     1141 cccatcaccg agttgatcgt attgatcagc gacaccgcat ccgcaccgcc gcgctgcgca
     1201 gcgagcgcgg gcggcttgat gtcggccacg ttcggcgtca gcttcacgat caccggcagc
     1261 cgcgtgtact gcttgcacca gcgcgtcacc atctcgatgt attcgggcac ctggcccacc
     1321 gccgagccca tgccgcgctc gttcatgccg tgcgggcagc cgaagttcaa ttcgatgccg
     1381 tcgcagccgg tgtcttcgac ccgcggcagg atcgctttcc acgcctgctc ttcgcacggc
     1441 accatgatcg agacgacgac cgcgcggtcg gcccagttgc gcttgacgcg cgcgatttca
     1501 tcgaggttgg tctcgagcgg ccggtcggtg atgagctcga tgttgttgaa gccgatcagg
     1561 cgccggtcct gcgaatacag cgccgcgtag cgcgggccgt tgacgttgac gatcggcggc
     1621 ccggcttcgc cgagggtctt ccacaccacg ccgccccagc cggcctcgaa ggcacgaacg
     1681 acgttgtatt ccttgtcggt cggcggcgcg gaggcaagcc agaacggatt ggggcttcga
     1741 atgccggcga aggtagtgct caggtcggcc atggcggggt tccggtgagt cgggcgcgag
     1801 cgcggcttgc aggcaggatc acgcggccgc ccggcggacc cgctcgaagg gcgcgccgct
     1861 gcgcaccatg ccgagcgaac gatcgatcga atgggcggcg atcttgccgt gctcgacggc
     1921 ctcgaccgtc aggtcctggc cgccgaaagt gcagtcgccg ccggcccaga ctttcgccag
     1981 cgatgtccgg ccttcggcat cgacctcgat ccggccgccg cgcaaggcga gcgtcgtcag
     2041 cgtcgg
//
LOCUS       DASVHM010000728         3350 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1063051, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000728 DASVHM010000000
VERSION     DASVHM010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3350
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1063051"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..337
                     /locus_tag="VF308_13405"
     CDS             <1..337
                     /locus_tag="VF308_13405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEX7437700.1"
                     /translation="SKIAGFSGTVGYMQSKGMPATEALAVLTILLEVGGGLALMFGFY
                     TRWAALALAAFTLLASLIFHNFWAVAEAQKMVQNLMFMKNVSIIGGMLVLAAFGPGAW
                     SLDARRRVR"
     gene            complement(383..1681)
                     /gene="egtB"
                     /locus_tag="VF308_13410"
     CDS             complement(383..1681)
                     /gene="egtB"
                     /locus_tag="VF308_13410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011805494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtB"
                     /protein_id="HEX7437701.1"
                     /translation="MIPSKPRAAAARNPLALRFAQVRQRSLDLAAPLSAEDCQIQSMP
                     DASPTKWHLAHVTWFFETFVLERFEPDFVAFDPAFRVLFNSYYQGIGERHPRARRGLI
                     TRPTLDDVKRYRRQVDERMHALLSTAAPHAERDAIVTLGLHHEQQHQELMLTDIKHAF
                     SANPNAPAYARRWPMTAVQPQPLCWFGYEGGLVEHGHDAARDGAFCFDNETPRHPAYT
                     APFELASRPVSYGDYLGFIEDGGYRRAELWLSMGWDWVCAEARRAPLYWRESDGVWLN
                     HTLQGLVEVDPRTPVCHLSYFEADAFARWAGARLPTEVEWEIAARRLHQPLRGNFADR
                     GAFHPLPHVEANDAEPAQMFGDVWEWTQSSYAPYPAYRPLPGAVGEYNGKFMCNQYVL
                     RGGSCATPAGHVRASYRNFFPPDAQWQFSGVRLARDAQGG"
     gene            1762..>3350
                     /gene="dnaE"
                     /locus_tag="VF308_13415"
     CDS             1762..>3350
                     /gene="dnaE"
                     /locus_tag="VF308_13415"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEX7437702.1"
                     /translation="MAFVHLRAHTEFSVVDGTLRIDDAIAAAAADAQGALAITDLSNL
                     FGTIKFYSAARRAGIKPIIGADLWLEPEAGEKSASRLIVLAQNTQGYLNLCELLSRSW
                     LRNAQRGQAWVQWDWLGECSAGLIALSGAENGAIGQALLAGDVGRAEALAGRFGAIFP
                     KRFYIEVQRAGLPSQEAHVVAAVKLAAALGLPVVATHPVQFLGAEDYEAHEARVCVAE
                     GEMLANPRRVRRFGREQYFKTQAQMEALFADLPSAVRNSVEIAKRCNLTLVLGKPQLP
                     DFETPMVGAERVPMAEYFRLASHEGLEARLRQLYPDEALRAAERPRYVERLDFEIETI
                     LKMGFPGYFLIVADFINWAQKNGCPVGPGRGSGAGSLVAYALNVTGLDPLRYNLLFER
                     FLNPERVSMPDFDIDFCQANRDRVIDYVKQKYGRDAVSQIATFGTMAAKAALRDVGRV
                     LGMSYGHVDSIAKLVPAPPGKTVTLKRPPERPDNSVIYARREAPEIEQRERNEVEVAE
                     LLALAERAEGLVRNVGMHAGGV"
BASE COUNT          521 a         1128 c         1176 g          525 t
ORIGIN      
        1 cagcaagatc gccggctttt ccggcacggt cggctacatg cagtccaagg ggatgcccgc
       61 gacggaagcg ctcgcggtgc tgacgatctt gctggaggtc ggcggcgggc tcgcgctgat
      121 gttcggcttc tacacccgct gggccgcgct cgcgctggcc gcgttcacgc tgctcgcttc
      181 gctgatcttc cacaatttct gggccgttgc ggaagcgcag aagatggtcc agaacctgat
      241 gttcatgaag aacgtctcga tcatcggcgg catgctcgtg ctcgccgcat tcggcccggg
      301 ggcctggagc ctcgacgccc gtcgccgcgt tcgctgaggg cggcgcctcg acggctcgac
      361 atgcgccagg cgcggcgcgc gctcagccgc cttgcgcgtc gcgcgcgagg cgcacgccgc
      421 tgaactgcca ctgcgcatcg ggcgggaaga agttgcggta gctcgcccgc acgtggccgg
      481 ccggcgtggc gcaggaaccg ccgcgcagca cgtactggtt gcacatgaac ttgccgttgt
      541 attcgccgac ggcaccgggc agcggccggt aggcgggata gggcgcgtag ctcgactggg
      601 tccattccca gacgtcgccg aacatctgcg ccggctccgc gtcgttcgcc tcgacatgcg
      661 gcaacggatg gaaggcgccc cggtcggcga agttcccgcg cagcggctgg tgcaggcgcc
      721 gcgccgcgat ctcccattcg acttcggtcg gcaggcgcgc tccggcccaa cgcgcgaaag
      781 catcggcctc gaagtagctg aggtggcaga ccggcgtgcg cgggtcgact tcgaccaggc
      841 cctgcaaggt gtgattgagc cacaccccgt cgctctcgcg ccagtagagc ggggcccggc
      901 gggcctcggc gcagacccag tcccagccca tcgacagcca cagttcggca cgccggtagc
      961 cgccgtcctc gatgaagccg aggtagtcgc cgtagctcac cgggcgcgac gcgagctcga
     1021 acggcgcggt gtaggcgggg tggcgcggcg tctcgttgtc gaagcagaaa gcgccgtccc
     1081 tggccgcgtc gtggccgtgc tcgaccaggc cgccctcgta gccgaaccag cacagcggct
     1141 gcggttgcac cgccgtcatc ggccagcgcc gcgcataggc cggggcgttc gggttcgcgc
     1201 tgaacgcgtg cttgatgtcg gtcagcatca gttcctggtg ctgctgctcg tgatgcaggc
     1261 cgagcgtgac gatcgcgtcg cgctcggcgt gcggcgccgc cgtcgacagc agcgcgtgca
     1321 tgcgctcgtc gacctggcgc cgatagcgtt tcacgtcatc gagcgtcggc cgcgtgatga
     1381 gtccgcgccg ggctcgcggg tggcgctcgc caatgccctg gtagtagctg ttgaacagca
     1441 cgcgaaacgc gggatcgaag gccacgaagt cgggctcgaa gcgctccagc acgaaggttt
     1501 cgaagaacca cgtgacgtgg gccagatgcc acttcgtcgg gctcgcatcg ggcatcgact
     1561 ggatctggca atcctcggcc gaaagaggcg ccgccaggtc gagcgagcgc tggcgcacct
     1621 gcgcgaagcg cagcgcaagc gggttgcggg cggcagcggc cctgggcttg gagggaatca
     1681 tggtgcgtgg cgtccgcagg gtcgaaggca ccagattagc ccaactcggg ggcccgcgca
     1741 tgaggtctct aaaatgcacc gatggcattc gttcacctgc gcgcccacac cgagttctcg
     1801 gtcgtcgacg gcaccttgcg catcgatgac gcgatcgccg cggcggcagc cgacgcacaa
     1861 ggcgcgctcg cgatcaccga tctttccaac ctgttcggca cgatcaagtt ctacagcgcc
     1921 gcgcggcgcg ccggcatcaa gcccatcatc ggtgccgacc tgtggctgga gcccgaggcg
     1981 ggcgagaagt cggccagccg cctgatcgtg ctggcgcaga acacccaggg ctatctgaac
     2041 ctgtgcgaac tgctgtcgcg cagctggctg cgcaatgccc agcgcggcca ggcctgggtg
     2101 caatgggatt ggctcggcga gtgcagcgcc gggctgatcg cgctctccgg ggccgagaac
     2161 ggagccattg gccaggccct gctcgctgga gacgtcggcc gtgccgaggc gctggcgggg
     2221 cggttcggag cgatctttcc gaagcgcttc tacatcgagg tgcagcgtgc cggcctgccg
     2281 agccaggagg cccacgtggt ggctgccgtg aagctggccg ccgcactcgg cctgccggtg
     2341 gtcgccacgc acccggtgca gttcctcggc gccgaagact acgaggcgca tgaggcccgg
     2401 gtctgcgtgg ccgaaggcga aatgctcgcc aacccgcgcc gggtcaggcg cttcgggcgc
     2461 gagcagtact tcaagacgca ggcgcagatg gaggccctct ttgccgacct gccgagcgcc
     2521 gtgcgcaaca gcgtcgagat cgccaagcgc tgcaatctca cgctcgtgct cggcaagccg
     2581 caattgccgg atttcgagac gccgatggtc ggcgccgagc gcgtgccgat ggccgaatac
     2641 tttcgcctcg cttcgcacga aggtctcgag gcgcggctgc gccagctcta tcccgacgag
     2701 gcgctgcgcg cagcggagcg accgcgctat gtcgagcgtc tggatttcga gatcgagacg
     2761 atcctgaaga tgggtttccc gggctacttc ctgatcgtgg ccgacttcat caactgggcc
     2821 cagaagaacg gctgccccgt aggcccaggc cgcggctccg gggccggttc gctggtcgcc
     2881 tatgcgctca acgtgaccgg cctcgacccg ctgcgctaca acctgctgtt cgagcgtttc
     2941 ctgaacccgg aacgggtctc gatgcccgat ttcgacatcg acttctgcca ggccaaccgc
     3001 gatcgcgtga tcgactacgt caagcagaag tacgggcgcg atgcggtgag ccagatcgcg
     3061 accttcggca cgatggcggc caaggctgcg ctgcgcgatg tcggccgcgt gctgggcatg
     3121 agctacggcc acgtcgactc gatcgccaag ctcgtgccgg cgccgccggg caagacggtg
     3181 acgctgaagc gcccgcccga gcgtcccgac aacagcgtca tctacgcacg ccgcgaagcg
     3241 cccgagatcg agcagcgcga gcggaacgag gtcgaggtcg cggagctgct cgcgctcgcc
     3301 gagcgcgctg aagggctggt ccgcaacgtc ggcatgcacg ccggcggcgt
//
LOCUS       DASVHM010000729         5087 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_267958, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000729 DASVHM010000000
VERSION     DASVHM010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5087
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267958"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(263..1534)
                     /locus_tag="VF308_13420"
     CDS             complement(263..1534)
                     /locus_tag="VF308_13420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007868509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HEX7437703.1"
                     /translation="MITPLPSIAGVPLDFFLFAAVLAGVAFFHHHTLRVAVIGLATIT
                     VYKLLFSPFHGVAGAPGLIALLGHEWVTIANLFGLLLGFALLSKHFEESRVPAVLPRF
                     LPDDWKGGFVMLVLVFVLSSFLDNIAAAMIGGTMATVLYKGRLHIGFLAAIVAASNAG
                     GSGSVVGDTTTTMMWIAGVSPVQVFEAYIAAVPALLFFGVVAARQQQAFQPITKDAPA
                     GVGVDWTRLGIVASILVAAVVANVYFNLRHPEVLERVPVLGIAVWVAIVVTTLVRRPD
                     WSLLPGATRGSVFLLSLVLIASMMPVEALPPASWPTALGIGFVSAVFDNIPLTALALH
                     QGGYDWGFLAYAVGFGGSMIWFGSSAGVALSNMYPQAKDAGRWLFHGWHVTVAYVLGF
                     FALLWILGWQPHPKHKATVVAQAVTAPAPAC"
     gene            complement(1537..2280)
                     /locus_tag="VF308_13425"
     CDS             complement(1537..2280)
                     /locus_tag="VF308_13425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006155986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016657 - obsolete oxidoreductase
                     activity, acting on NAD(P)H, nitrogenous group as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HEX7437704.1"
                     /translation="MTNPGPLELSTAIVDAKPSPLETRAVEAAIVSRRSTRAFMPTPV
                     PQELIREILAVASRAPSGTNTQPWKVYVLTGAAKRELSRRIVAAYDDPAERATHTEEY
                     AYYAIEWKSPFIDRRRKVGWDLYGLLGIAKADKQRMHAQHARNYEFFGAPVGLMFTID
                     RILRQGSWLDYGMFLQSLMVAARAHGLHTCPQAAFTQFHRIIMPAIGAPENEQLVCGM
                     SLGHADPDAIENSLVTEREPVSGFARFLE"
     gene            complement(2277..3224)
                     /locus_tag="VF308_13430"
     CDS             complement(2277..3224)
                     /locus_tag="VF308_13430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase"
                     /protein_id="HEX7437705.1"
                     /translation="MRAFSSDRYRLPLPEGHRFPVGKYRLLREQLDGRSGLQLIEAEP
                     ASDAELALAHTPSYVSAVVEGHLGAAQLREIGFPWSPEMVERARRSVGATIAAARAAL
                     ADGVSANLAGGTHHASADKGSGYCVFNDTAVAARLMQAEWHRAKRPRERALLRVAVID
                     LDVHQGNGTASIFRDDDSVFTLSMHAARNFPFRKDASDLDVALPDGCRDDAYLAALDA
                     ALAELWRRHGETPPGLIFYLAGADPHEGDRLGRLKLSAAGLAERDRRVLAQARARRIP
                     VALSMAGGYGRVIEDTVQVQIATIELARESWREWNNAPS"
     gene            3433..3972
                     /locus_tag="VF308_13435"
     CDS             3433..3972
                     /locus_tag="VF308_13435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HEX7437706.1"
                     /translation="MMTAEQILAAHKSNVEVLFGLGSKAFEGVEKLIELNVQTAKAAM
                     SEAAETARAALSVKDAQELMALQAGLLQPVAEKAAAYSRHVYEIAATTNAEVTKVAEA
                     TTSEAQAKFLAVVDTAVKNAPAGTENAVALVKSAVAAATNAYEGVQKAAKQAADVAEA
                     NFQALSTTAVRAIKNKRAA"
     gene            complement(4054..4977)
                     /locus_tag="VF308_13440"
     CDS             complement(4054..4977)
                     /locus_tag="VF308_13440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX7437707.1"
                     /translation="MHRFGRRAVLGAIAALLAGCQSVPKPPPTVERPAPAPVVVVPPP
                     PPPPPKPPRLGLALGGGAARGFAHIGVIQALEESGIRPDLVVGTSAGSLVAALYASGR
                     SGTELAALADSMDETVFADWSYPTRGLIRGEALARYVREHTGGRTIEQMRLPLGIVAT
                     DLDSGQAILFQRGDPGAAVRASSAVPAVFQPVKIGTREYVDGGLVAPVPVRFARQMGA
                     EVVIAVDISAPPEGNPTSDVMRMLLQTFAIMGRSINSLELRDADVVLRPRLAGFASAD
                     FANRKRAIQAGREAMLAQLGELRERVAAKSH"
BASE COUNT          900 a         1707 c         1735 g          745 t
ORIGIN      
        1 ggccccggac aggaacttgc ggcgtgatgc gtcaggctta gtctgcgcat ttttcttcag
       61 gtctttatga ctcatggtga cctcctagat tggaatagtg atttaactac ggatgaactc
      121 gtaacaaggc gggcgggaaa accacttttt atcagtatat tgtttggcgc tatgccttgc
      181 gacacgccga caatcctata cccgccatag ggcaaaatca agcatgatac gccccgctgc
      241 gatgcgcttt gccgccacgg gctcagcacg cgggcgccgg cgcggttacc gcctgcgcaa
      301 ccactgtcgc tttgtgtttc gggtgcggct gccagcccag tatccacagc agagcgaaaa
      361 aaccgagcac gtaagccacc gtcacgtgcc agccatggaa gagccagcgg ccggcatcct
      421 tggcttgcgg gtacatgttc gacagcgcca cgccggccga ggaaccgaac cagatcatcg
      481 agccgccgaa gccgaccgca taggcgagaa agccccagtc gtagccgccc tggtgcaagg
      541 cgagcgcggt cagcgggatg ttgtcgaaca cggccgagac gaaaccgatg ccgagcgcgg
      601 tcggccacga tgccgggggc agcgcctcga ccggcatcat cgacgcgatc agcacgagcg
      661 agagcaggaa gacgctgccg cgggtcgcac ccggcagcag gctccagtcg ggccggcgca
      721 cgagcgtcgt gacgacaatc gcgacccaga ccgcgatgcc gagcaccggc acgcgctcga
      781 gcacctcggg gtggcggagg ttgaaataga cgttcgccac gacggcggcg acgaggatgc
      841 tggcgacgat ccccaggcgc gtccagtcga cgcccacgcc ggccggcgcg tctttcgtga
      901 tcggctggaa ggcctgctgc tggcgcgccg cgacgacgcc gaaaaagagc agcgccggaa
      961 ccgccgcgat gtaggcctcg aacacctgga ccggcgaaac cccggctatc cacatcatcg
     1021 tcgtcgtcgt gtcgccgaca acgctgcccg agccgcccgc gttcgacgcg gcgacgatgg
     1081 cggccagaaa gccgatgtgc aagcggccct tgtacaggac cgtggccatc gtcccgccga
     1141 tcatcgcggc ggcgatgttg tcgagaaagc tcgacaacac gaacaccagc accagcatca
     1201 cgaagccgcc cttccagtcg tcgggcagga agcgcggcag gaccgccggc acgcggctct
     1261 cctcgaagtg cttggacagc agcgcgaagc cgagcagaag tccgaacagg ttggcgatgg
     1321 tcacccattc atggccgagc agcgcgatca gcccgggcgc gccggccacg ccgtgaaacg
     1381 gcgagaaaag gagcttgtag accgtgatcg tcgccaggcc gatcaccgcc acgcgcaagg
     1441 tgtggtggtg gaagaacgcg acccccgcca gcactgcggc gaagaggaag aagtcgagcg
     1501 ggactcccgc gatggaaggc agcggcgtga tcatcgtcac tcgagaaagc gcgcgaagcc
     1561 gctcaccggt tcgcgctcgg tgacgagcga gttctcgatc gcgtccggat ccgcgtggcc
     1621 gagcgacatg ccgcagacga gctgctcgtt ctcgggcgcg ccgatcgccg gcatgatgat
     1681 gcggtggaat tgggtgaaag cggcctgcgg gcaggtgtgc aggccatgcg cccgtgccgc
     1741 gaccatgagg ctctgcagga acatgccgta gtcgagccag ctgccctggc gcaggatccg
     1801 gtcgatcgtg aacatcagtc cgaccggcgc accgaagaat tcgtagttgc gcgcgtgctg
     1861 cgcgtgcatg cgctgcttgt cggccttggc gatgcccagg agcccgtaga gatcccagcc
     1921 gaccttgcgg cgccggtcga tgaacggcga cttccactcg atcgcgtagt aggcgtattc
     1981 ctcggtgtgg gtggcccgct cggcggggtc gtcataggcc gcgacgatgc ggcgcgagag
     2041 ctcccgcttg gccgccccgg tgagcacgta gaccttccac ggctgcgtgt tcgtgcccga
     2101 gggcgcgcgc gacgcgaccg ccaggatctc gcggatcagc tcctgcggca ccggcgtggg
     2161 catgaacgcg cgcgtcgatc ggcgcgacac gatcgcggct tcgaccgcgc gggtctcgag
     2221 cgggctcggc ttcgcgtcga cgatggcggt ggacaattcg aggggcccgg ggttcgtcat
     2281 gagggcgcat tgttccattc ccgccagctt tcacgcgcca gctcgatcgt cgcgatctgg
     2341 acctgcaccg tgtcctcgat cacgcggcca tagccgcccg ccatcgagag cgcgaccggg
     2401 atgcggcgcg cccgcgcctg cgccaggacg cggcgatcgc gttcggcgag ccccgccgcg
     2461 ctcagcttga gacgaccgag ccggtcgcct tcgtgcggat cggcgccggc gagatagaag
     2521 atcagcccgg gcggcgtctc gccatggcgg cgccacagct cggcgagcgc cgcatcgagg
     2581 gcagccaggt acgcgtcgtc gcggcagccg tcgggcaagg cgacgtcgag gtcgctcgcg
     2641 tccttgcgaa acggaaagtt gcgcgccgcg tgcatcgaca gcgtgaagac gctgtcgtcg
     2701 tcgcggaaga tcgacgcggt gccgttgccc tggtgcacgt cgagatcgat gaccgccacg
     2761 cgcaacagag cgcgctcgcg cgggcgcttc gcgcggtgcc attcggcctg catcagccgg
     2821 gccgcgacgg cggtgtcgtt gaagacgcag tagccgctcc ccttgtcggc gctcgcatgg
     2881 tgcgtgccgc cggccaggtt ggccgagacg ccgtcggcga gggccgcgcg cgccgccgcg
     2941 atcgtcgcgc cgaccgaccg gcgcgcgcgc tcgaccatct cggggctcca cggaaaaccg
     3001 atctcgcgca actgcgccgc accgaggtgt ccctcgacca ccgcgctgac gtaagacggt
     3061 gtgtgcgcga gagcgagttc agcgtcgctc gccggctccg cctcgatcag ttgcagcccc
     3121 gaccgaccgt cgagctgctc gcgcaggagg cggtacttcc ccaccggaaa gcgatgcccc
     3181 tcgggcagcg gcaggcgata gcggtcggat gaaaaggcgc gcatggaagc gctggattgt
     3241 gccgggccgc gaaggccgcg cgcgagcgcg gcaagggccc tgcaagccag gttctaggcg
     3301 ttgccgacta atctgctgca acgcaccaaa aatggcttgc aatcgtcgtg cggccctcta
     3361 caattcgttt atgttgcagt gcaccaaaag ccctgcacca gctcgccttc aaacccacag
     3421 gagattccta ccatgatgac cgccgaacaa atcctcgccg cccacaagtc caatgtcgaa
     3481 gtcctcttcg gtctcggaag caaggctttc gagggtgtgg aaaagctgat cgaactcaac
     3541 gtccagacgg ccaaggctgc gatgagcgaa gccgccgaaa cggctcgtgc cgcactgtcg
     3601 gtgaaggacg cccaggaact gatggccctg caagccgggc tgctccagcc ggttgccgaa
     3661 aaggccgccg cctacagccg ccacgtgtat gaaatcgctg ccacgacgaa cgccgaagtg
     3721 accaaggtcg ccgaagcgac gacctcggaa gcgcaagcca agttcctggc cgtggtcgac
     3781 accgcggtga agaacgcgcc ggccggcacc gagaacgccg tcgccttggt gaagtcggct
     3841 gttgccgccg ccaccaatgc gtacgaaggc gtgcagaagg ctgccaagca agccgccgat
     3901 gtcgccgaag cgaacttcca ggcgctctcg acgaccgccg tccgcgcgat caagaacaag
     3961 cgcgccgcct gaccgaaacg ctctttcccg ctcgttgaaa acggcccgct cgcgcgggcc
     4021 gtttttcttg ggaacgcgtt cttcgagaag ggctcagtgg ctcttcgcgg cgacccgctc
     4081 gcgcagttcg ccgagttgcg cgagcatggc ctcgcggccg gcctggatcg cgcgcttgcg
     4141 gttcgcgaag tcggcgctgg cgaaaccggc gagccggggg cgcagcacga cgtcggcatc
     4201 gcgcagttcg aggctgttga tgctgcggcc catgatcgcg aaggtctgca gcagcatgcg
     4261 catcacatcg ctcgtgggat tgccctcggg tggggccgag atgtccacgg cgatcacgac
     4321 ctcggcgccc atctggcgcg cgaagcgcac cggcaccggc gcgaccagcc cgccgtcgac
     4381 gtattcgcgc gtgccgatct tcaccggctg gaacaccgcc ggcaccgcgc tcgaggcgcg
     4441 caccgcggcg cccgggtcgc cgcgctggaa caggatcgcc tggccgctgt cgaggtcggt
     4501 cgcgacgatg ccgagcggca gccgcatctg ctcgatggtg cgcccgccgg tgtgctcgcg
     4561 cacgtagcgc gccagcgctt cgccgcggat cagcccgcgc gtgggatagg accaatcggc
     4621 gaagacggtt tcgtccatcg agtcggcgag cgcggcgagt tcggtgccac tcctgccgga
     4681 tgcgtagagc gcggcgacga ggctgcccgc cgaggtgccg accacgagat cgggccggat
     4741 cccgctctcc tcgagcgcct ggatcacgcc gatgtgcgcg aacccgcgcg ccgcgccgcc
     4801 gccgagcgca aggccgaggc gcggcggctt cgggggcggc ggaggcggtg gcggaacgac
     4861 cacgacgggc gcaggcgcgg gccgctcgac ggtcggcggc ggcttcggca cgctctggca
     4921 gccggccagc agcgcggcga tggcaccgag cacggcccga cggccgaagc gatgcatgga
     4981 aacggaatct ggcaccgtcg aatgctaagg gctcgctcgc gttcatatgc ctgtacggga
     5041 taaccaatca actaaagagt cattccctat tcgacgccgc cttcata
//
LOCUS       DASVHM010000730         2539 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1279686, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000730 DASVHM010000000
VERSION     DASVHM010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1279686"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..118
                     /locus_tag="VF308_13445"
     CDS             <1..118
                     /locus_tag="VF308_13445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEX7437708.1"
                     /translation="PRCPRVFDRCRVERPDLLDAGATRAACWLHAAPMRQAA"
     gene            115..1164
                     /locus_tag="VF308_13450"
     CDS             115..1164
                     /locus_tag="VF308_13450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HEX7437709.1"
                     /translation="MMPLAPPGTTDGALVEVQDLAKTFDVSPPWLNRVVERKSRLFVH
                     AVDGVGFSIARGKTLALVGESGCGKSTVARLLVGLYEPTRGRVLFDGIDTAATWRSSA
                     ARALRRRMQMIFQDPYASLNPRWNVADIVGEPLKEHGLADESGAEPTHADSRRLKARV
                     AELLQSVGLAAADVEKYPHQFSGGQRQRISIARALATQPDFLVCDEPTSALDVSVQAQ
                     VLNIMKDLQHRQGLTYLFISHNLAVVRHVSDQVGVMYLGRLVELADKAEVFARPRHPY
                     TRMLLDAIPDIHMSGRARTPVQGEVPNPLSPPAGCSFHPRCPHADERCARERPALLPD
                     QGALIACHAVEEGRI"
     gene            complement(1197..2471)
                     /gene="lysA"
                     /locus_tag="VF308_13455"
     CDS             complement(1197..2471)
                     /gene="lysA"
                     /locus_tag="VF308_13455"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEX7437710.1"
                     /translation="MTLPGSPQVAYRGDALFVEGSSLADLARRHGTPLYVYSRTAMLD
                     ALSGYQRALKGRDHLICYAMKANSSLAVLQTFAHAGCGFDIVSAGELARVLAAGARAE
                     RVVFSGVGKTRTEMRAALEAGVLCFNVESEDELDVLSAIAAEMHRMARISLRVNPDVD
                     AGTHPYISTGLKGNKFGIAHGEAVAAYRRAAALPGLEVAGIDCHIGSQITEVAPYLDA
                     LDRLLDLVEAVEAHGIAIPHIDLGGGLGITYTDEEPPLAETLIRALLERIDARGHGHR
                     KIIVEPGRSLVGNAGVLVSEVLYVKPGTEKNFCIVDAAMNDLMRPAMYGAWMNIVACR
                     RRAIETVRYDIVGPICESGDWLGHDRELAVKAGDFIAVLSAGAYCMSMASNYNSRGRA
                     AEVMVSGSDAWLIRERERSEELFRDEKLLPED"
BASE COUNT          387 a          857 c          875 g          420 t
ORIGIN      
        1 cccgcgctgc ccgcgcgttt tcgatcggtg ccgcgtcgag cggcccgacc tgctcgacgc
       61 gggcgcgacc cgcgccgcct gctggctgca cgctgcgccg atgaggcagg ccgcatgatg
      121 cccttggcgc cacccggcac gaccgacggc gcactggtcg aagtgcagga tctggccaag
      181 accttcgacg tctcgccgcc gtggctcaac cgcgtggtcg agcgcaagag ccggctcttc
      241 gtccatgccg tcgacggggt cggcttctcg atcgcgcgcg gcaagacgct cgccctggtc
      301 ggcgagtcgg gttgcggcaa gagcaccgtg gcccgcctgc tggtcgggct ctatgaaccg
      361 acccgaggtc gggtgctctt cgacggcatc gacaccgccg cgacttggcg ctcgagcgca
      421 gcgcgggcgt tgcggcgccg gatgcagatg atcttccagg atccctatgc gagcctgaac
      481 ccgcgctgga acgtggccga catcgtcggg gagccgctga aggagcatgg gctcgccgac
      541 gagtccggcg ccgagccgac ccacgccgat tccaggcgat tgaaggcgcg cgtcgcggaa
      601 ctgctgcagt cggtcggcct tgcggcggcc gatgtcgaga agtatccgca ccagttttcc
      661 ggcgggcagc gccagcgcat ctcgatcgcg cgggcgctgg cgacgcagcc cgatttcctc
      721 gtctgcgacg agccgacctc tgcgctcgac gtgtcggtgc aggcgcaggt gctcaacatc
      781 atgaaggatc tgcagcaccg ccagggtctg acgtatctct tcatctcgca caacctggcg
      841 gtggtccgcc atgtgagcga tcaggtcggc gtgatgtatc tcggtcgcct ggtcgaactg
      901 gccgacaagg ccgaggtctt tgcgcgcccg cgccatccgt acacgcgaat gctcctcgat
      961 gcgattcccg acatccacat gagcgggcgc gcgcgcacgc cagtgcaggg ggaggtgccg
     1021 aacccgctga gtcccccggc gggttgttcg tttcacccgc gctgcccgca tgccgacgag
     1081 cgctgcgcgc gcgagcggcc ggcgttgcta cccgaccagg gcgcactgat cgcgtgccat
     1141 gcggtggagg aaggccggat ctgattcgaa gcggcgcgct ggtggcgcgc gcgctatcag
     1201 tcttcgggaa gcagcttctc gtcgcgaaac agttcttcgg accgttcgcg ctcgcgaatg
     1261 agccatgcat ccgaccccga caccatgact tccgcggcgc gccctcgact gttgtagttg
     1321 ctggccatgc tcatgcaata ggcgccggcg gagagcacgg cgatgaagtc acccgccttc
     1381 accgcgagct cgcggtcgtg gccgagccag tcgcccgact cgcagatcgg gccgacgatg
     1441 tcgtatcgga cggtctcgat ggcgcggcgc cggcacgcca cgatgttcat ccacgcgccg
     1501 tacatcgccg ggcgcatcag gtcgttcatc gccgcatcga cgatgcagaa gttcttctcc
     1561 gtgcccggct tcacgtagag cacttcgctg acgaggacgc cggcattgcc gactagcgag
     1621 cgtcccggct cgacgatgat cttgcggtgg ccatggccgc gcgcgtcgat gcgctcgagc
     1681 agggcacgga tcagcgtctc ggcgaggggc ggttcttcgt cggtgtaggt gatgccgagg
     1741 ccacctccca gatcgatgtg cgggatcgcg atgccatgcg cttcgacggc ctcgaccaga
     1801 tcgagcagcc ggtcgagcgc gtccaggtag ggggcgacct cggtgatctg ggagccgata
     1861 tggcaatcga tgccggcgac ttcgagcccg ggcagcgccg cggcacgccg gtacgccgcc
     1921 actgcttcgc catgcgcgat gccgaatttg ttgcctttca gtccggtcga gatgtaggga
     1981 tgcgtgcccg catcgacatc gggattgacg cgcaagctga tcctcgccat tcgatgcatt
     2041 tcggcggcga tggcggaaag cacgtcgagc tcgtcttcgc tctcgacgtt gaagcacagc
     2101 acccccgcct cgagcgccgc gcgcatctcg gtgcgggtct tgccgacccc ggagaaaacg
     2161 acccgttcag cgcgggcccc ggcggccagg acccgtgcca gttcgcctgc ggagacgata
     2221 tcgaagccgc agcccgcgtg cgcgaaggtc tgcaagacgg cgaggctcga gttggctttc
     2281 atcgcgtagc agatgagatg gtcgcggcct ttgagcgcac gctgataacc ggacaacgcg
     2341 tcgagcatcg ccgtgcgcga atagacgtag agcggtgtgc cgtggcggcg cgccaggtcc
     2401 gcgagggaac tgccttcgac gaagagtgcg tcgccccgat aggccacctg cggcgacccg
     2461 ggcagtgtca tggccgggac ggcgccgtcg cgcccgaggc cgctgcgctc ggcgacgcac
     2521 cggctgccgg cttcggacg
//
LOCUS       DASVHM010000731         4098 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1135980, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000731 DASVHM010000000
VERSION     DASVHM010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4098
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1135980"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..734
                     /locus_tag="VF308_13460"
     CDS             <1..734
                     /locus_tag="VF308_13460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX7437711.1"
                     /translation="SPLQPWAAALTVRMRRHLALKLVGTTAVIGLFFIAYLHLLHQPA
                     YPVTVMPLTALDPLIPLQPQALFAYLSLWLYVGVGPGLQLNFRELVVYAAWIGVLCLT
                     GLVIFYFWPTQVPPLALDVSHFPGFAMLQGVDAAGNACPSMHVTIATFTVIRIEDVLR
                     RVGAPAFLRIFNVVWFLAIALSTLAIKQHVVLDAAAGALLGIVFALPSLRWRPSARQA
                     AAEVVGHPPSEDRSRAGAQSVVAQP"
     gene            complement(766..>4098)
                     /gene="purL"
                     /locus_tag="VF308_13465"
                     /gene_synonym="purI"
     CDS             complement(766..>4098)
                     /gene="purL"
                     /locus_tag="VF308_13465"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HEX7437712.1"
                     /translation="KIFNATFTIDGVAQPLTMFQMIRNTEALAPQHTVVAYSDNSSVM
                     EGGPIERWLPEGYTNAPTYRARHETVHVLMKVETHNHPTAISPFPGASTGAGGEIRDE
                     GATGRGSRPKAGLTGFSVSNLHLPGTDEPWERERYGKPEHIASPLQIMIDGPLGGAAF
                     NNEFGRPNLAGYFRVYEQTVAGERRGYHKPIMIAGGLGSIPRAQTHKIEFPAGTLLIQ
                     LGGPGMRIGMGGGAASSMAAGANAAELDFDSVQRGNPEIQRRAQEVINHCSALGDSNP
                     ILAIHDVGAGGISNAFPELIDGAGRGARFDLRAVPVEESGLAPKEIWCNESQERYVMA
                     VAPAALPLFRAMCERERCPLAVVGVATEARRLVVGALDPQALVPDVERDAAVIDMPLE
                     VLLGKPPKMHRRVARRAVALPALDLTGVRLDRVAFDVLRHPTVASKRFLITIGDRTVG
                     GLSSRDQMVGPWQVPVADCAVTLADYAGFRGEAMAIGERTPLAAADAPASGRMAVGEA
                     ITNLLAAPIELERVKLSCNWMAACSDDPAAPGDDAALYDTVRAVGLELCPALGISVPV
                     GKDSLSMRTRWHSESASRQVTAPVSLVVSAFATLEDVRPASTPQLLPGDTTLLLIDLG
                     DGRMRMGGSMLAQALGQFGAEVPDLDEPQRLKALVEAVNCLRGPGLVLAYHDRSDGGL
                     WAAVCEMAFAGHLGVSLNVDLLVTEGDGIADSRAEYGDSKNWATQVSARREELTLRAL
                     FNEELGAVIQVPSARRDEALQVLRTFGLSRHSHVIGKTNARGVVEVWRDTKAVFSAPL
                     RELHQAWDEVSWRIARLRDNPACADAEHAAAGQADDPGLHVHLAGTDARQPQAPALVG
                     ARPKVAVLREQGVNSHIELSYAMDQAGFDTYDVHMTDLQTGRARLDQFQGFVACGGFS
                     YGDTLGAGEGWARSILFNPLLADRFAAFFARTDAFALGICNGCQMMAALAAMIPGAEA
                     WPRFTRNKSEQFEARLALVEVLPSASIFFSGLAGSRIPVAVAHGEGYADFSQRGDAAK
                     VQRALRFVDNFGAPTEAYPANPNGSPGGLTAVTTADGRHTALMPHPERVFRNVQMSWT
                     SGDRSERSPWMRMFENARRQVG"
BASE COUNT          543 a         1458 c         1433 g          664 t
ORIGIN      
        1 cttctccttt gcagccttgg gccgccgccc tcaccgtgcg gatgcgccgg catctggcct
       61 tgaagctggt cggaacgacg gccgtcatcg ggctgttctt catcgcctat ctgcacctgc
      121 tgcaccagcc ggcctacccg gtgaccgtga tgccgctgac cgctctcgat cctctgatcc
      181 cgctccagcc gcaggcgctg ttcgcttacc tttccctgtg gctgtacgtc ggagtcgggc
      241 caggactgca gctgaacttt cgggagctgg tcgtctacgc ggcatggatc ggcgtgctgt
      301 gcctgaccgg cctggtcatc ttctatttct ggcccaccca ggtgccgccg ctggcgctgg
      361 acgtctcgca ctttcccggc ttcgcgatgt tgcaaggggt ggatgccgcc ggcaacgctt
      421 gcccctccat gcacgtcacc atcgcgacct tcacggtaat ccggatcgag gacgtgctgc
      481 gccgggtcgg cgcgccggcg ttcctgcgca tcttcaacgt ggtctggttc ctggcaatcg
      541 ccttgtcgac gctggcgatc aagcagcacg tcgtgctcga cgcagccgca ggtgcactgc
      601 tcggcatcgt cttcgcgctg ccgtcgctgc gctggcgacc ctcggctcgt caggcagctg
      661 cagaggtcgt cggccacccc ccatcagagg accggtcgag ggccggcgca cagtcggtcg
      721 tggcccagcc gtgaattccg ccaagcgttc cggcgccgtc cgctgctagc ccacttgccg
      781 tcgtgcgttc tcgaacatcc gcatccacgg actgcgctcg ctcctatccc ccgaggtcca
      841 gctcatctgc acgttgcgga acacccgctc cgggtgcggc atcagcgcgg tgtggcggcc
      901 gtcggcggtc gtcacggcgg tcaggccgcc ggggctgccg ttcgggttgg ccggataggc
      961 ctcggtcggc gcgccgaagt tgtcgacgaa gcgcaacgcg cgctgcacct tcgctgcgtc
     1021 gccacgctgc gagaagtcgg catagccttc gccgtgcgcc accgcgacgg ggatgcggct
     1081 gcccgccagg ccgctgaaga agatcgacgc cgacggcagc acctcgacga gggcgaggcg
     1141 ggcctcgaac tgctcgctct tgttgcgcgt gaagcgtggc cacgcctcgg cgcccgggat
     1201 catcgcagcg agcgcggcca tcatctggca gccgttgcag atgcccagcg cgaacgcgtc
     1261 ggtgcgtgcg aagaacgccg cgaagcggtc ggccagcagc gggttgaaga ggatcgagcg
     1321 ggcccagcct tcgcccgcgc ccagcgtgtc gccgtagctg aagccgccgc aggcgacgaa
     1381 gccctgaaac tgatccagcc gtgcgcggcc ggtctgcagg tcggtcatgt gcacgtcgta
     1441 ggtgtcgaag ccggcctggt ccatcgcgta gctcagctcg atatggctgt tgacgccctg
     1501 ctcgcgcagc accgccacct tcggccgcgc gccgacgagc gccggcgcct gcggctggcg
     1561 cgcatccgtg ccggcgaggt gcacgtgcaa ccccgggtcg tcggcttgcc cggccgccgc
     1621 gtgctccgca tcggcgcagg ccgggttgtc gcgcagccgc gcgatgcgcc agctgacctc
     1681 gtcccaggcc tggtgcagct cgcgcagcgg cgcgctgaat accgccttcg tgtcgcgcca
     1741 cacctcgacg acgccgcgcg cgttggtctt gccgatcaca tggctgtggc ggctgaggcc
     1801 gaacgtgcgc aagacctgca gcgcctcgtc gcggcgcgcg ctcggcacct ggatcacggc
     1861 gccgagttcc tcgttgaaga gcgcacgcaa ggtcagttcc tcgcgccgcg cgctcacctg
     1921 ggtcgcccag ttcttcgaat cgccgtactc ggcgcggctg tcggcgatgc cgtcgccttc
     1981 ggtcacgagc aggtcgacgt tgaggctcac gccgaggtgg cccgcgaacg ccatctcgca
     2041 gactgcggcc cagagcccgc cgtcgctgcg gtcgtggtag gcaaggacca ggccggggcc
     2101 gcgcaggcag ttcacggcct cgacgagtgc cttcaggcgc tgcggttcgt cgagatcggg
     2161 aacctcggcg ccgaactggc cgagcgcctg cgcgagcatc gagccgccca tgcgcatgcg
     2221 gccatcgccg aggtcgatca gcagcagcgt cgtgtcgccc ggcaggagct gcggggtcga
     2281 tgcgggccgc acatcctcga gcgtcgcgaa cgccgagacg acgagactga ccggcgccgt
     2341 gacctggcgc gacgcactct cgctgtgcca gcgcgtccgc atcgagaggc tgtccttgcc
     2401 gaccgggacg ctgatgccga gcgccgggca gagctccagg ccgaccgccc gcaccgtatc
     2461 gtagagcgcg gcgtcgtcgc cgggcgcggc gggatcgtcg ctgcatgccg ccatccagtt
     2521 gcagctcagc ttgacgcgct cgagttcgat cggcgcggcg agcaggttgg tgatggcctc
     2581 gcccaccgcc atgcgccccg aagcgggcgc gtcggccgcg gcgagcgggg tgcgctcgcc
     2641 gatcgccatg gcctcgccgc gaaagccggc gtaatcggcc agcgtgacgg cgcagtcggc
     2701 caccggcacc tgccacggcc cgaccatctg gtcgcggctg ctgaggccgc ccaccgtgcg
     2761 gtcgccgatc gtgatcagga agcgcttgct ggcgacggtc ggatggcgca gcacgtcgaa
     2821 ggcgacccgg tcgaggcgca cgccggtgag gtcaagcgcg ggcagcgcga cggcgcgacg
     2881 cgcgacgcgc cggtgcatct tcggcggctt gccgagcagc acttcgagcg gcatgtcgat
     2941 caccgccgca tcgcgctcga cgtccggcac gagcgcctgc gggtcgagcg cgccgacgac
     3001 gaggcgccgc gcctcggtcg ccacgccgac caccgccaag gggcagcgct cgcgctcgca
     3061 catcgcccga aagagcggca gcgcggccgg ggcgacggcc atcacgtagc gctcctggct
     3121 ctcgttgcac cagatctcct tcggcgcgag gccgctctcc tcgaccggca ccgcccgcag
     3181 gtcgaagcgg gcgccgcgcc cggcgccgtc gatcagttcg ggaaaggcgt tcgagatccc
     3241 gcccgcgccg acgtcgtgga tggcgaggat cgggttcgaa tcgccgaggg cgctgcagtg
     3301 gttgatgacc tcctgggcac ggcgctggat ctcggggttg cctcgctgca ccgaatcgaa
     3361 gtcgagctcg gccgcgttcg cgcccgccgc catcgagctc gccgcgccgc cgcccatgcc
     3421 gatgcgcatg cccggcccgc cgagctggat cagtaaggtg cccgccggga actcgatctt
     3481 gtgcgtctgc gcccggggaa tcgagccgag cccgcccgcg atcatgatcg gcttgtgata
     3541 gccgcgccgc tcgccggcga cggtctgctc gtagacgcgg aagtagccgg ccaggttcgg
     3601 gcgcccgaat tcgttgttaa aggcggcgcc gccgagcggc ccgtcgatca tgatctgcaa
     3661 cgggctcgcg atgtgttccg gcttgccgta gcgttcgcgc tcccacggct cgtcggtgcc
     3721 gggcaggtgc aggttggaga cgctgaagcc ggtgaggccg gccttcgggc gcgagcctcg
     3781 tccggtcgcg ccttcgtcgc ggatctcgcc gcccgcgccg gtggaagcgc ccgggaacgg
     3841 cgagatcgcg gtcgggtggt tgtgggtctc gaccttcatc agcacgtgca cggtctcgtg
     3901 gcgcgcgcga taggtcggtg cgttggtgta gccctcgggc agccagcgct cgatcggccc
     3961 gccttccatc accgacgagt tgtcgctgta ggcgacgacc gtgtgctgcg gcgccaaggc
     4021 ctcggtgttc ctgatcatct ggaacatcgt cagcggctgc gctacgccgt cgatcgtgaa
     4081 ggtcgcgttg aagatctt
//
LOCUS       DASVHM010000732         2027 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1353761, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000732 DASVHM010000000
VERSION     DASVHM010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1353761"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..930)
                     /gene="pyrC"
                     /locus_tag="VF308_13470"
     CDS             complement(<1..930)
                     /gene="pyrC"
                     /locus_tag="VF308_13470"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEX7437713.1"
                     /translation="MADELTITRPDDWHLHVRDGAALAALVPASARQFARAIIMPNLK
                     PPVTTAALAVGYRERIRAALPAGVDFEPLMTLYLTDNLAPEEVRRAREAGVVAVKLYP
                     AGATTNSDAGVTDLRRTYPALEALQRAGMPLLVHGEVTDPAVDLFDREQVFIDSQLIP
                     LRRDFPELKIVVEHITTREAAQYVAGAGPRTAATITAHHLLFNRNALFMGGIRPHYFC
                     LPVLKREAHRLALVAAATSGSDRFFLGTDSAPHPVELKENATGCAGCYTASSALELYL
                     EAFDAANALDRFEAFASFNGPAFYGLPRNKGSVT"
     gene            complement(1005..1742)
                     /locus_tag="VF308_13475"
     CDS             complement(1005..1742)
                     /locus_tag="VF308_13475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018422819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEX7437714.1"
                     /translation="MSSLRKADLHAGLRFVGALAEAAGDAQGFARAGVDALPMLVASD
                     ITTLSVCDLVSGRRSVVASPGSSLSTADRACFDRYFHEHPLVRYHADLGGRGAHRISD
                     SIPFVRFRHTALYSEYYRRIGIDHAVALPVRVDDRRLVSFVLNRRGRDFSDRECELLD
                     LVGAHLAPLYRKSAAPAASLDALPLTQREREVLRWVGAGKTDRDIAAIVGCSHRTVHK
                     HLERVYAKLGVETRTAAVMRALDVSFQ"
BASE COUNT          336 a          664 c          714 g          313 t
ORIGIN      
        1 cgtcaccgaa cctttgttgc gcggcaggcc atagaacgca gggccattga aactcgcgaa
       61 ggcctcgaaa cggtcgagcg cgttcgccgc gtcgaacgcc tcgagataga gctccagcgc
      121 cgaggaagcc gtgtagcagc cggcgcagcc ggtcgcgttc tccttcagct cgaccggatg
      181 cggcgcactg tcggtgccga ggaagaaccg gtcgctgccg gaggtcgccg cggcgaccag
      241 cgcgagccga tgcgcctcgc gcttcaacac cggcaggcag aagtagtgcg gccggatccc
      301 gcccatgaac agcgcgttgc gattgaaaag caggtggtgc gcggtgatcg tcgcggccgt
      361 ccggggcccg gccccggcga cgtactgcgc cgcctcgcgc gtggtgatgt gctcgaccac
      421 gatcttcaac tccgggaaat cgcggcgcag cggaatcagc tgcgaatcga tgaagacctg
      481 ttcgcggtcg aacaggtcga ccgccgggtc ggtgacctcg ccatgcacga gcagcggcat
      541 gcccgcgcgc tgcagcgcct cgagcgccgg gtaggtcctg cgcagatcgg tgacgccggc
      601 atcgctgttc gtggtcgccc ccgcaggata gagcttgacc gcgacgacgc cggcctcgcg
      661 cgcacgccgc acttcctcgg gcgcgagatt gtcggtcagg tagagcgtca tcaacggctc
      721 gaaatcgacg ccggcgggca gcgcggcacg aatgcgctcg cgatagccga cggcgagtgc
      781 cgcagtcgtc accggcggct tcagattcgg catgatgatc gcgcgggcga actggcgcgc
      841 gctcgccggg accaacgcgg ccaaggccgc gccatcgcgc acgtgcaggt gccagtcgtc
      901 cgggcgcgtg atcgtgagct cgtcggccat tgcgtcgatt ctcgcatcgc cgtcgcgatg
      961 cacgggccgg tcaacgctcc aggggtgcgg cggcgcggcg tgcgctactg aaacgacaca
     1021 tcgagcgccc gcatcaccgc cgcagtgcgg gtttcgacgc cgagcttggc gtagacgcgc
     1081 tccaggtgct tgtggaccgt gcgatggctg cagccgacta tggcggcgat gtctcgatcg
     1141 gtcttgccgg cgccgaccca gcgcagcacc tcgcgttcgc gctgggtcag cggcaacgca
     1201 tcgagggacg ccgccggcgc cgccgacttg cggtagagcg gcgcgagatg cgcaccgacg
     1261 aggtccagca attcgcactc ccgatcgctg aagtcgcgcc cgcgccggtt caacacgaag
     1321 ctcacgagcc tgcggtcatc gacccggacg ggcagcgcaa ccgcatgatc gatgccgatg
     1381 cgccggtagt actcgctgta gagggccgtg tggcgaaacc ggacgaaggg aatcgaatcg
     1441 ctgatgcggt gtgcgccgcg gccgcccagg tcggcgtgat agcgcaccag cgggtgttca
     1501 tggaagtagc ggtcgaagca ggcgcggtcg gccgtgctca agctgctgcc agggcttgcg
     1561 acgacgctgc gtcgcccgct gacgaggtcg cagaccgaga gcgtcgtgat gtcgctggcg
     1621 accagcatcg gcagcgcatc gacgcccgcg cgggcgaagc cctgcgcatc gccggccgcc
     1681 tcggcgagcg caccgacaaa gcgcaggccc gcatgcaagt cggctttgcg cagcgatgac
     1741 atgggtatgc gatctcagta gagtgaaccg aaaattctgc gacgacggcg ctgccgtgga
     1801 cgcaacgctg cgtatcgcgg cgcgccgctc gaccgtctgg aacgctacgc gatttgcccg
     1861 ttcgcttcaa ggagtttccg cggcgccgac cgccgttcgc cacccatttg gcgtgaatcg
     1921 gccctaggag ctcgcgcggc agaacgtttt cgagatggct tggctcatct cgaagggggc
     1981 gtcgtcgagg ttgtatgagg ctttcgacga gtgacttgct ggtgaat
//
LOCUS       DASVHM010000733         2366 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_339407, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000733 DASVHM010000000
VERSION     DASVHM010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339407"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2366
                     /locus_tag="VF308_13480"
     CDS             <1..>2366
                     /locus_tag="VF308_13480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HEX7437715.1"
                     /translation="AVIAPAKRFMPVGAKWSREQLEVLPGLTVHDLMMVPIDRIRAFF
                     DRLSLPSTLLDDALKLLLDEVRTRLRYLCDVGIGYLTLDRQSRTLSGGEVQRINLTTA
                     LGTSLVNTMFVLDEPSIGLHPRDMSRIIEAMQRLRDAGNTLVVVEHDPAVMLAADRLI
                     DMGPGPGERGGRIVFDGTPDEIRGADTLTGAYLGARKHVGMGIKRLVSDATPRLIVEG
                     ARDHNLQNVTVEFPLRHLVCVTGVSGSGKSTLMHDVLFPALARHFGKATETPGAFDRL
                     LGADWLGDAVFVDQSPIGKTARSNPASYVGAFDEIRKLFAQAPLALQRGYGASMFSFN
                     AGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGRRYRTELLDVKIDRRLPGDVTRDL
                     SVADVLELTVSEAVQLFRDDREVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLA
                     GFLAETAQGATASRQPVARRGTLYMFDEPTTGLHFDDIAKLMRSFRKLLDAGHSLIVI
                     EHNLDVIRAADWLIDLGPEGGEGGGHVVATGTPEEVRRHASSHTGKALAAYDTALGRD
                     GHAVEEGSMPYMVKLARVARAGADETIRIVNAREHNLKSLSVSIPRGKFSVVTGVSGS
                     GKSTLAFDILFNEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGG
                     RKSTVATTTEVWHFLRLLYVKLGLQHCTKDGTPVKPQSAESIAAQILRDHAGEHIGLL
                     APLVVARKGVYTDLAKWAKSRGHTHLRVDGDFIKVDPWPRLDRFREHT"
BASE COUNT          373 a          840 c          803 g          350 t
ORIGIN      
        1 acgccgtgat cgcgccggcc aagcgcttca tgcccgtcgg tgcgaagtgg tcgcgtgaac
       61 agctcgaggt gctgccgggc ctgacggtgc acgacctgat gatggtgccg atcgaccgca
      121 tccgcgcctt cttcgaccgc ctgtcgctgc cgtcgacgct gctcgacgat gcgctgaagc
      181 tgttgctcga cgaggtgcgc acgcgcctgc gctacctgtg cgacgtcggc atcggctacc
      241 tcacgctcga ccggcagagc cgcacgctct cgggcggcga ggtccagcgc atcaacctga
      301 cgaccgccct cggcacctcg ctggtcaaca cgatgttcgt gctcgacgag ccgtcgatcg
      361 gcctgcatcc gcgcgacatg agccgcatca tcgaggcgat gcagcggctg cgcgacgccg
      421 gcaacacgct ggtggtggtg gagcacgacc cggccgtgat gctcgcggcc gatcgcctga
      481 tcgacatggg cccgggcccg ggcgagcgcg gcggccggat cgtcttcgac ggcacgcccg
      541 acgagatccg cggcgccgac accttgaccg gcgcctatct cggtgcacgc aaacacgtcg
      601 ggatgggcat caagcgcctg gtcagcgatg cgacgccgcg gctcatcgtc gaaggggcgc
      661 gcgaccacaa cctgcagaac gtgacggtcg aattcccgct gcgccacctg gtctgcgtga
      721 ccggcgtttc cgggtcgggc aagagcacgc tgatgcacga cgtgctgttc ccggcgctgg
      781 cgcgccactt cggcaaggcg accgagacgc cgggtgcgtt cgaccgcctt ctcggcgccg
      841 actggctcgg cgatgcggtg ttcgtcgacc agtcgccgat cggcaagacc gcgcgctcga
      901 atccggcgag ctacgtcggc gcgttcgacg agatcaggaa gctcttcgca caggcgcccc
      961 tcgcgctgca gcgcggctac ggcgcgagca tgttcagctt caacgccggc gacggccgtt
     1021 gcccgacctg cggcggctcg ggcttcgaac atgtcgagat gcagttcctc tctgacgtgt
     1081 accttcgctg ccccgattgc gatggccggc gctaccgcac cgaattgctc gacgtcaaga
     1141 tcgaccggcg cctgcccggc gacgtgacgc gcgacctgag cgtggccgat gtgctcgagc
     1201 tcaccgtcag cgaagcggtg cagctcttcc gcgacgaccg cgaggtgctg cgcgtgctgc
     1261 agccgatcgt cgatgtcggc ctcgaatacg tgaagctggg ccagccggtg ccgacgctgt
     1321 ccggcggcga agcgcaacgc ctgaagctcg ccggcttcct cgccgaaacg gcgcagggcg
     1381 cgaccgcgag ccgccagccg gtggcgcggc gcggcaccct ctatatgttc gacgagccga
     1441 cgaccgggct gcacttcgac gacatcgcca agctgatgcg ctcgttcagg aagctcctcg
     1501 acgccggtca ttcgctgatc gtcatcgagc acaacctcga cgtgatccgg gccgccgact
     1561 ggctgatcga cctcgggccc gaaggcggcg agggcggcgg ccacgtggtc gcgaccggca
     1621 cgcccgagga agtgcggcgc cacgcgagct cgcacaccgg caaggcgctc gccgcctacg
     1681 acacggcgct cggccgcgac ggtcacgcgg tcgaggaggg gtcgatgccc tacatggtga
     1741 agctggcacg ggttgcgcgc gccggcgccg acgagacgat ccgcatcgtc aacgcgcgcg
     1801 agcacaacct caagtcgctc agcgtcagca tcccgcgcgg caagttcagc gtcgtcaccg
     1861 gcgtctccgg gtcgggcaag tcgacgctcg ccttcgacat cctgttcaac gaagggcagc
     1921 gccgctacct cgaatcgctg aacgcgtatg cgcgcagcat cgtgcagccg gcgggccggc
     1981 ccgaggtcga cgcggtgtac ggcattccgc cgaccgtcgc gatcgagcag cgcctgtcgc
     2041 gcggcggcag gaagagcacg gtcgcgacga cgaccgaggt ctggcacttc ctgcgcctgc
     2101 tctacgtcaa gctcggcctg caacattgca cgaaggacgg cacgccggtg aagccgcaga
     2161 gcgccgagag catcgccgcg cagatcctgc gcgaccacgc cggcgagcac atcggcctgc
     2221 tcgcgccgct ggtcgtggcg aggaagggcg tctacaccga tctcgccaag tgggccaagt
     2281 cgcgtggcca tacgcacctg cgcgtcgacg gcgacttcat caaggtcgat ccctggccgc
     2341 gcctcgaccg cttccgcgag cacacg
//
LOCUS       DASVHM010000734         3172 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1280053, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000734 DASVHM010000000
VERSION     DASVHM010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1280053"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..869)
                     /locus_tag="VF308_13485"
     CDS             complement(<1..869)
                     /locus_tag="VF308_13485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013901804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX7437716.1"
                     /translation="MRTRRIGPFVVSAIGLGCMNLSHAYAAPPPPEVAEALLLKALDL
                     GVTLFDTAALYGFGTNETLVGRVLAPHRSKVTLASKCGMTGVNGTRVIDGRPETIKRT
                     CEESLQRLRTDVIDLYYLHRWDKKVPIEDSVGALADLVRAGKVRTVGLSEVSAATLRR
                     AHAVHPITSLQTEYSLWTRNAEIAGLEACRELGVAFVAFSPVARGFLTGKLRDVSGFD
                     AKDIRRGMARFDAENFATNLKLLDGYTALANEAGCTPAQLALAWLLAKGEHIVPITGT
                     TSIEHLEENLGAA"
     gene            complement(881..1840)
                     /locus_tag="VF308_13490"
     CDS             complement(881..1840)
                     /locus_tag="VF308_13490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003067562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX7437717.1"
                     /translation="MSKTIKAALIGAGAFGIKHLDGIKNIDGVEVVSVIGRDLEKTKE
                     VARQYGIAHAGTDLAASLAIRELDAVILCTPTQMHADQSIACLKAGKHVQVEIPLADT
                     LKGAEDVAAMQKSTGLVAMVGHTRRFNPSHQWVHKRIAAGEFRIQQMDVQTYFFRRKN
                     MNALGQPRSWTDHLLWHHAAHTVDLFAYQTGGAIVQAHAIQGPIHPTLGIAMDMSIQL
                     KSSTGAICTLALSFNNEGPLGTFFRYIGDTGTYLARYDDLFNGKDEKIDVSKVDVSMN
                     GIELQDREFFAAIREGREPNSSVAQVLPCYRTLHKLEQQLDAA"
     gene            complement(1837..2715)
                     /locus_tag="VF308_13495"
     CDS             complement(1837..2715)
                     /locus_tag="VF308_13495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013801816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class III extradiol dioxygenase subunit beta"
                     /protein_id="HEX7437718.1"
                     /translation="MADAAHEHARITASVYTSHVPAIGAALDLGKSAEPYWQPVFKGY
                     EFSKQWLKDNQPDVVFLVYNDHATAFSLDLIPTFAIGTAAGFTPADEGWGPRPVPRVI
                     GHPELASHIAQSVIQDDFDLTIVNKMDVDHGLTVPLSLMCGQPPAWPCPVIPFAVNVV
                     QYPVPSGRRCFNLGRAIRKAVESYDEPLKVQIWGTGGMSHQLQGPRAGLINRTFDNAF
                     LDRLIADPEGQAAVPHIDYVREAGSEGIELVMWLIARGAMADVAGGKPPKVVHRFYHV
                     PASNTAVGHLILENPQ"
     gene            complement(2715..3104)
                     /gene="ligA"
                     /locus_tag="VF308_13500"
     CDS             complement(2715..3104)
                     /gene="ligA"
                     /locus_tag="VF308_13500"
                     /EC_number="1.13.11.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003054194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018579 - protocatechuate 4,5-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0046278 - 3,4-dihydroxybenzoate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protocatechuate 4,5-dioxygenase subunit alpha"
                     /protein_id="HEX7437719.1"
                     /translation="MALDKPYLDVPGTTIFDAEQSRKGYHLNQFCMSLMKAANRERFK
                     ANERAYLDEWPMTEAQKLAVLARDLNRCIALGGNIYFLAKIGATDGKSFQQMAGSMTG
                     MTEAEYRDMMIGGGRPIEGNRYIGEKK"
BASE COUNT          446 a         1019 c         1107 g          600 t
ORIGIN      
        1 tcggcggcgc cgaggttctc ttcgaggtgc tcgatgcttg tcgtgccggt gatcggcacg
       61 atgtgctcgc ccttggcgag cagccaggcg agcgcgagct gcgccggcgt gcagcccgct
      121 tcgttcgcca gtgccgtgta gccgtcgagc agcttcaggt tggtggcgaa gttctcggca
      181 tcgaagcgcg ccatgccgcg gcggatgtct ttcgcgtcga agcccgacac gtcgcggagc
      241 ttgccggtca ggaagccgcg cgcgacgggg ctgaaggcga cgaaggcgac accgagttcg
      301 cggcaggctt cgagccccgc gatctcggcg ttgcgcgtcc acagcgaata ttcggtctgc
      361 agcgaggtga tcgggtgcac cgcatgggcg cggcgcaagg tcgcggccga cacctccgac
      421 agcccgaccg tgcgcacctt gcccgcgcga accaggtcgg cgagcgcgcc gacgctgtcc
      481 tcgatcggca ccttcttgtc ccagcggtgc aggtagtaca ggtcgatcac gtcggtgcgc
      541 aggcgctgca ggctttcttc gcaggtgcgc ttgatcgtct cggggcggcc gtcgatcacg
      601 cgcgtgccgt tcacgccggt catgccgcac ttgctcgcga gcgtgacctt cgagcggtgc
      661 ggcgccagca cgcggccgac cagcgtctcg ttcgtgccga agccgtacag cgccgcggtg
      721 tcgaacagtg tcacgccgag gtccagcgcc ttcagcagca gcgcctccgc gacctcgggc
      781 ggcggtggtg cggcgtaggc atggctcagg ttcatgcacc cgaggccgat ggcgctgacc
      841 acgaacgggc cgatgcgacg cgtgcgcatg ctttgtctcc tcaggctgcg tcgagctgct
      901 gttcgagctt gtgcagcgtg cggtagcacg gtagcacctg ggcgacgctc gagttcggct
      961 cgcggccttc gcggatcgcg gcgaagaact cgcgatcctg cagctcgatg ccgttcatcg
     1021 acacgtccac cttgctgacg tcgatcttct cgtccttgcc gttgaacagg tcgtcgtagc
     1081 gcgcgaggta ggtgccggtg tcgccgatgt agcggaagaa ggtgcccagc ggcccctcgt
     1141 tgttgaacga cagcgccagc gtgcagatcg cgccggtgct gctcttgagc tggatcgaca
     1201 tgtccatcgc gatgcccagc gtcgggtgga tcggcccctg gatcgcatgg gcctgcacga
     1261 tggcgccgcc ggtctggtac gcgaacagat cgacggtgtg cgcggcgtga tgccacagca
     1321 ggtggtcggt ccagctgcgc ggctggccga gcgcgttcat gttcttgcgg cggaagaagt
     1381 aggtctgcac gtccatctgc tggatcctga actcgccggc cgcaatcctc ttgtgcaccc
     1441 actggtggct ggggttgaag cggcgcgtgt ggccgaccat cgcgaccagg ccggtgcttt
     1501 tctgcatcgc ggccacgtcc tcggcgccct tcagcgtgtc ggccagcggg atctcgacct
     1561 gcacgtgctt gccggctttc aggcaggcga tgctctggtc cgcgtgcatc tgcgtcggcg
     1621 tacacaggat gaccgcgtcg agttcacgga tcgcgaggct tgcggccagg tcggtgccgg
     1681 cgtgggcgat gccgtactgc ctggcgactt ccttcgtctt ctccaggtcg cggccgatca
     1741 ccgagacgac ctcgacgccg tcgatgttct tgatgccgtc caggtgcttg atgccgaagg
     1801 cgccggcgcc gatcagcgcc gccttgatcg ttttgctcat tgcgggttct ccaggatcag
     1861 atggccgaca gcggtattgc tggccggcac gtgatagaag cggtgcacga ccttgggcgg
     1921 cttgccgccg gcgacatcgg ccatcgcgcc gcgcgcgatc aaccacatca cgagttcgat
     1981 gccttcggag ccggcctcgc gcacgtagtc gatgtgcggc acggcggcct ggccttcggg
     2041 gtcggcgatc agccggtcga ggaaggcgtt gtcgaacgtg cggttgatca gcccggcgcg
     2101 cggcccctgc agctggtggc tcatgccgcc ggtgccccag atctgcacct tgagcggttc
     2161 gtcgtaggac tcgacggcct tgcggatcgc cctgccgagg ttgaagcagc gccgccccga
     2221 agggaccggg tactgcacca cgttgaccgc gaacgggatc accgggcagg gccaggccgg
     2281 cggctggccg cacatcagcg acagcggcac ggtcaggccg tggtccacgt ccatcttgtt
     2341 gacgatggtc aggtcgaagt cgtcctggat caccgactgc gcgatgtgtg acgcgagctc
     2401 ggggtggccg atcacccggg gtaccgggcg cgggccccag ccttcgtcgg ccggcgtgaa
     2461 cccggccgcg gtgccgatcg cgaaggtcgg gatcaggtcg agcgagaacg cggtggcgtg
     2521 gtcgttgtag acgaggaaga cgacgtcggg ctggttgtcc ttcagccact gcttggagaa
     2581 ctcgtagccc ttgaagaccg gctgccagta cggctcggcg ctcttgccga ggtcgagcgc
     2641 ggcaccgatg gccggaacgt gcgaggtgta gacgctcgcg gtgatccggg catgctcgtg
     2701 agctgcatcg gccatcactt cttctccccg atgtatcggt tgccctcgat cgggcggccg
     2761 ccgccgatca tcatgtcgcg gtattccgct tcggtcatgc cggtcatgct gccggccatc
     2821 tgctggaagc tcttgccatc ggtcgcgccg atcttggcca ggaagtagat gttgccgccg
     2881 agtgcgatgc agcggttcag gtcgcgcgcg agcaccgcca gcttctgcgc ctcggtcatc
     2941 ggccattcgt cgaggtaggc ccgttcgttc gccttgaagc gctcccggtt cgcggccttc
     3001 atcagcgaca tgcagaactg gttcaggtgg tagcccttgc gcgactgttc ggcgtcgaag
     3061 atggtcgtgc cgggcacgtc aagatagggt ttgtcgaggg ccatcgggtg ttcccccttc
     3121 taccttgtgc attcgaaact ggcggcacgg gtcacatcgc cgccccgata gc
//
LOCUS       DASVHM010000735         2174 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1063640, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000735 DASVHM010000000
VERSION     DASVHM010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2174
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1063640"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..289
                     /locus_tag="VF308_13505"
     CDS             <1..289
                     /locus_tag="VF308_13505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437720.1"
                     /translation="RIALHYGEVQTRRRESDLSTVVVGGDAILVASRVEPIVEPGQIW
                     ATEEFRQQFLQRPSLWRTTPLASPAGADLFNVKKAGSTEPDSWVRLYRLDS"
     gene            complement(315..1433)
                     /locus_tag="VF308_13510"
     CDS             complement(315..1433)
                     /locus_tag="VF308_13510"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX7437721.1"
                     /translation="MDNPASLQAAGWHACVCCSGVGRRRLLLGAAAAGASAFAAGCSI
                     APAASRSAATTPDLSQAAGRIDVHHHLSPPGWVAELRARGQVDPLVASWTPQRSLADM
                     DRAGIASSVLSITTPGIFFAGADVAIGRRVARECNEYGARLVADNPGRFGFFAALPLL
                     DAEGSLREIAHALDVLKADGIGLITSYGDKWLGDPVFFPVMEELDRRKAVVYTHPTEA
                     NCCSNLQPDIPPVMIEFGTDTTRAIASILFNGNANRFGDIRWIFSHAGGTMPFLIERF
                     VRHPILVPKVAPLFPQGVGAALKRFYYDTAQAANPAAMSALTKVVPTSQIVLGTDYPY
                     RTGIDHVLGLRDCEVFSAADLKLIERETPLSLLPRLRH"
     gene            complement(1517..>2174)
                     /locus_tag="VF308_13515"
     CDS             complement(1517..>2174)
                     /locus_tag="VF308_13515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006226618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX7437722.1"
                     /translation="LHVYPGVDHAFARVGGDHYHRPSALMAHERSIAALKSAMGPHYD
                     LSALWDKHCEYEFGTRNVDDTMATMVAEPYVNHIPTMTGGVGYKELHRFYSNHFVNSN
                     PPDTTLTSISRTVGATQVVDELLFSFTHTTEIPWMLPGIAPTGKRVEVPLLAVVKFRG
                     DKLYHEHIYWDQASVLVQVGLLDPKQLPVAGIATARKLLDESLPSNQLMPGWKASAQM
                     "
BASE COUNT          355 a          703 c          766 g          350 t
ORIGIN      
        1 gcgcattgcg ctgcactacg gagaggtgca gacgcgccgg cgcgagagcg acctgagcac
       61 cgtcgtcgtc ggcggcgacg cgatcctggt tgcgtctcgc gtcgagccga tcgtcgagcc
      121 ggggcagatc tgggccaccg aggagttccg gcaacagttc ctccagcggc cttcactgtg
      181 gcgcacgacg ccgcttgcat cgccggcggg cgcggacctc ttcaacgtca agaaggcggg
      241 ctcgacggag cccgactcgt gggtccgcct gtatcggctc gactcttgac ggtcccgcac
      301 cgaccggcga acgctcagtg ccgcaggcgc ggcagcaggg agagcggcgt ttcgcgctcg
      361 atcagcttca ggtcggctgc gctgaagacc tcgcaatcgc gcaggcccag cacgtggtcg
      421 atgccggtgc ggtacggata gtcggtgccc aggacgatct gcgaggtcgg gacgaccttc
      481 gtcaacgccg acatcgcggc cgggttggca gcctgcgcgg tgtcgtagta gaagcgtttc
      541 aatgcggcgc cgacgccttg gggaaacagc ggcgcgacct tcggcacgag gatcggatgg
      601 cggacgaaac gctcgatcag gaacggcatg gtcccgccgg cgtgcgagaa gatccagcga
      661 atgtcgccga accggttcgc gttgccgttg aagaggatcg aggcgatcgc gcgcgtcgtg
      721 tcggtgccga actcgatcat caccggcggg atgtcgggct gcaggttgct gcagcagttg
      781 gcctccgtcg gatgggtgta gaccaccgcc ttgcggcggt cgagttcctc catgaccgga
      841 aagaagaccg ggtcgccgag ccacttgtcg ccatagctcg tgatcaggcc gatgccgtcg
      901 gccttcagca cgtcgagcgc atgcgcgatc tcgcgcaggc tgccctcggc atcgagcagc
      961 ggcaaggcgg cgaagaagcc gaagcgcccg gggttgtcgg ccaccagccg ggccccgtat
     1021 tcgttgcact cgcgcgcgac gcggcgaccg atcgcgacgt ccgccccggc gaagaagatg
     1081 cccggagtcg tgatcgacag caccgacgac gcgatgccgg cccgatccat gtcggcgagg
     1141 gagcgctgcg gcgtccagct cgccaccagc ggatcgacct ggccccgcgc gcgcagttcg
     1201 gcgacccagc ccggcggcga cagatggtgg tgcacgtcga tccgccccgc cgcctggctc
     1261 aggtccggtg tagtcgccgc ggatcgcgag gcggcgggcg cgatcgagca accggcggcg
     1321 aacgccgaag caccggccgc ggccgcaccg agaagcagcc tgcgtcggcc gacgccggag
     1381 caacagacgc aggcgtgcca gcctgcggct tgcagtgagg ccgggttgtc catggttgtc
     1441 tccggatgtc tcctttgcgc cgctgccaac cgttcgagca gcgagccggc aatccgtgtc
     1501 ggcgcagccg cttccgtcac atctgcgcgg aagccttcca gcccggcatc agctgattcg
     1561 acggcaagct ctcatcgagc agcttgcgtg ccgttgcgat gccggcgacc ggcaactgct
     1621 tcgggtcgag gagtccgacc tgcaccagga cgctcgcctg atcccagtag atgtgctcgt
     1681 gatagagctt gtcgccgcgg aacttgacga cggccagcaa aggaacctcg acgcgcttgc
     1741 ctgtgggcgc gatgccggga agcatccacg gaatctcggt cgtgtgcgtg aagctgaaga
     1801 gcagctcgtc cacgacctga gtcgccccga ccgtgcgcga gatcgacgtg agcgtggtgt
     1861 ccggcggatt gctgttgacg aagtggttgc tgtagaaacg gtgcagttcc ttgtaaccca
     1921 cgcccccggt catcgtcggg atatggttca catagggttc ggccaccatc gtggccatgg
     1981 tgtcgtcgac attgcgtgtg ccgaactcat actcgcagtg cttgtcccag agcgccgaca
     2041 ggtcgtagtg cgggcccatg gccgacttga gcgcggcgat gctgcgttcg tgcgccatca
     2101 acgccgacgg gcggtgatag tggtctccgc cgacgcgggc gaaggcatgg tcgacgccgg
     2161 ggtagacgtg cagc
//
LOCUS       DASVHM010000736         2534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_125566, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000736 DASVHM010000000
VERSION     DASVHM010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125566"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..138)
                     /locus_tag="VF308_13520"
     CDS             complement(<1..138)
                     /locus_tag="VF308_13520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019699914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEX7437723.1"
                     /translation="MRIGHITLANRLFAAPMAGVTDRPFRQLCKRLGAGYAVSEMVTS
                     RK"
     gene            247..729
                     /locus_tag="VF308_13525"
     CDS             247..729
                     /locus_tag="VF308_13525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013593313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HEX7437724.1"
                     /translation="MDAWLNALMAALALPQVGLSTVFFIAFIAATLVPLGSEPAVFAL
                     VKLNPEMFWPAIGVATLGATLGGALTWWMGYGAERAYEHMTHKHRDGRALRWLRRFGP
                     KACLLSWLPIVGDPLCAVAGWLRLPFWPCLAYMAIGKFARYFGMTAGLIWFFPGQYVH
                     "
     gene            complement(785..1306)
                     /locus_tag="VF308_13530"
     CDS             complement(785..1306)
                     /locus_tag="VF308_13530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HEX7437725.1"
                     /translation="MVKKLKAMADKKKNASGAGLFDSALASSVKESAQQIWLAGMGAF
                     AKAQAEGRQVFDALVKEGVTLQKKTQSAAEERFGDVSSKMTSMADEVTAKAGKQWDKL
                     ESIFEERTAKAMKKLGVPSSKDVEALMARIDALSAQVANGARSAARKTAARTGAKTAP
                     KKTAAKRATRKTA"
     gene            1544..>2534
                     /locus_tag="VF308_13535"
     CDS             1544..>2534
                     /locus_tag="VF308_13535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015012422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7437726.1"
                     /translation="MRYFVTGATGFIGKRLVKALLARRGAVVHFLLRPESEGKLGALL
                     DHWGEAAGSKRVVPVYGDLTAKKLGVSADAIKKLKGQVDHVYHLAAVYDLSADAESQI
                     ATNIEGTRAVVEFAKAIDAGHLHHVSSIAAAGLYEGVFREDMFDEAEGLDHPYFMTKH
                     ESEKIVRTESKVPWTVYRPALVVGDSRTGEMDKIDGPYYFFKLIQRMRQLLPPWMPSV
                     GLEGGRINIVPVDFVVAALDHISHRKAELAGKCFHLVDPQGYRIGDVLDIIGKAAHAP
                     KMNLFVNAALLGFIPKSVKKGLMALAPVRRVKAAVLKDLGLPEDMLTFVNFPTR"
BASE COUNT          373 a          865 c          834 g          462 t
ORIGIN      
        1 cttcctcgac gtcaccatct cgctcaccgc gtagcccgcg ccgaggcgct tgcagagctg
       61 gcggaacggc cggtcggtga cgcccgccat cggcgcggca aacagccggt tcgccagcgt
      121 gatgtggccg atgcgcatga gggggcgggg tggggtgctg aaaaacgagg cagcagtata
      181 gcggccggtt ttcgccgttt cttccagtgc gaccccccat gttccggggg ctcgataatc
      241 gattcgatgg atgcttggct caacgcgctc atggcggcgc tcgcgctgcc gcaagtgggc
      301 ctgtcgacgg tcttcttcat cgccttcatc gccgcgacgc tggtcccgct cggctccgag
      361 ccggcggtgt tcgcgctcgt caagctcaac ccggagatgt tctggccggc gatcggcgtc
      421 gcgacgctgg gcgccacgct cggcggcgcg ctcacctggt ggatgggcta cggcgccgaa
      481 cgcgcctacg agcacatgac gcacaagcac cgcgacggcc gcgccttgcg ctggctgcgc
      541 cgcttcgggc ccaaggcgtg cctgctctcg tggctgccga tcgtcggcga tccgctctgc
      601 gccgtcgccg gctggctccg gctgccgttc tggccttgtc tcgcctacat ggcgatcggc
      661 aagttcgcgc gctacttcgg catgacggcc gggctgatct ggttcttccc gggacagtac
      721 gtccactgaa tccggaaagc cgaagaggac gccgaagcgt cctcttcgag acgatcgccg
      781 aggatcaggc cgtcttgcgc gtggcgcgct tggcggcggt cttcttcggc gctgtcttcg
      841 cgccggtccg ggccgcggtc ttgcgcgccg ccgacctggc gccgttcgcg acctgcgccg
      901 acagcgcgtc gatgcgcgcc atcagcgcct cgacgtcctt cgacgacggc acgccgagct
      961 tcttcatcgc cttggcggtc cgctcctcga agatcgactc gagcttgtcc cactgcttgc
     1021 cggccttggc ggtgacttcg tcggccatgc tcgtcatctt gctcgagacg tcgccgaacc
     1081 tctcctcggc ggcgctctgc gtcttcttct gcagcgtcac gccttccttg acgagggcgt
     1141 cgaacacctg gcggccttcg gcctgcgcct tggcgaaagc gcccatgccg gcgagccaga
     1201 tctgctgcgc cgattccttg accgagctgg cgagcgcgct gtcgaacagg cccgcgccgg
     1261 aagcgttctt cttcttgtcg gccatcgcct tgagtttctt gaccatgtgt ggttctcctg
     1321 agtggttgcg gctgcactgc agcgctatcc caatgtaggc aaacgctctg gagagggcac
     1381 actaagttga tagggcggcg cccctaaaga agcccgcgct tgcggccggg aggagtgccg
     1441 cacatcgttg gccagtcggg tttgccccgc gcgccgggcg cggtcgtctg ctcaagaatc
     1501 gccgaacgcg ggcgcgatgg ggcgcacctc gagggagtca ggaatgcgct atttcgtcac
     1561 cggagccacg ggcttcatcg gcaagcgtct cgtcaaggcc ttgctggccc ggcgcggcgc
     1621 cgtcgtccac ttcctgttgc gccccgaaag cgagggcaag ctgggggcgc tgctcgacca
     1681 ctggggcgaa gcggccggca gcaagcgggt cgttccggtc tatggggacc tcaccgcgaa
     1741 gaagctcggc gtctcggccg acgctatcaa gaagctgaag ggccaggtcg accacgtcta
     1801 tcacctcgcc gcggtctacg acctctcggc cgacgccgag tcgcagatcg cgaccaacat
     1861 cgagggcacg cgcgccgtcg tcgagttcgc caaggcgatc gacgccggcc accttcacca
     1921 cgtcagctcg atcgccgcgg cgggcctcta cgaaggcgtc ttccgcgagg acatgttcga
     1981 cgaggccgag ggcctcgacc atccgtactt catgaccaag cacgagagcg agaagatcgt
     2041 gcgcaccgag tcgaaggtgc cgtggacggt ctatcggccg gcgctcgtcg tcggcgactc
     2101 gcgcaccggc gagatggaca agatcgacgg gccgtactac tttttcaagc tgatccagcg
     2161 catgcgccag ctgctgccgc cgtggatgcc atcggtcggc ctcgagggcg gccgcatcaa
     2221 catcgtcccg gtcgatttcg tcgtcgccgc gctcgaccac atcagccacc gcaaggccga
     2281 gctcgccggc aagtgcttcc atctcgtcga cccgcagggc taccggatcg gcgacgtgct
     2341 cgacatcatc ggcaaggcgg cgcacgcgcc gaagatgaac ctgttcgtca atgcggcgct
     2401 gctgggcttc attccgaaga gcgtcaagaa gggcctgatg gcgctggccc cggtacggcg
     2461 cgtcaaggct gcggtgctga aggacctcgg tctgccggaa gacatgctga ccttcgtcaa
     2521 ttttccgacc cgct
//
LOCUS       DASVHM010000737         3468 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_920888, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000737 DASVHM010000000
VERSION     DASVHM010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3468
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_920888"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1519
                     /gene="aceE"
                     /locus_tag="VF308_13540"
     CDS             <1..1519
                     /gene="aceE"
                     /locus_tag="VF308_13540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012747281.1"
                     /note="E1 component; part of pyruvate dehydrogenase; forms
                     a complex with DlaT and LpdC; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HEX7437727.1"
                     /translation="LLVKTVKGFGMGKSGEGKNTAHQTKKLVDEDVKTFRDRWNIPIP
                     DDKLPDIPFYKPADDTPEMRYLHERRQALGGYLPKRRVRADEQLKVPALETFKAVLDA
                     TVEGREISTTQAFVRFLTQLLRDKELGPRAVPILVDEARTFGMEGLFRQIGIYNPAGQ
                     NYTPVDRDQVMYYREDKSGQVLQEGINEPGGMSSWIAAATSYSTNNRIMVPFYVYYSM
                     FGFQRVGDLAWAAGDMQARGFLLGGTSGRTTLNGEGLQHEDGHSHILAGTIPNCVSYD
                     PTFAHEVGVILHHGLVRMVEKQDNVYYYLTLLNENYPMPGLTPGTEEEIIKGMYLLRE
                     GAKKTPRVNLLGSGTILRESLFAQELLDADWGVAANVWSCPSFNELARDGQDAERWNL
                     LHPTRPPRVPFVTQQLEKVAGPVVASTDYMKQYADQIRAFIPKGRSYKVLGTDGFGRS
                     DFRTKLREHFEVDRHYVVVAALKALADEGTVPMATVAEAIGRYAINADKINPLYA"
     gene            1551..3227
                     /gene="aceF"
                     /locus_tag="VF308_13545"
     CDS             1551..3227
                     /gene="aceF"
                     /locus_tag="VF308_13545"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HEX7437728.1"
                     /translation="MALVEVKVPDIGDFKEVEVIELLVKAGDRIKAEQSLITVESDKA
                     SMEIPSSHAGVVKELRVKIGDKVGEGSAVLMLEADDAGAAAGEGARPTPAQPAGVAAP
                     AAPPAPAATESAPAATESAAAGAPIEVLVPDIGDFAEVAVIEVMVRPGDSVKVEQSLI
                     TVESDKASMEIPSSHAGVVKEVRVKVGDKVSKGSPVVLVEAAGGAQAASGLAAVAGPA
                     ARSSAPAAATEKHVPTAALPAPEPSAPQGALPHASPSIRKLARELGMPLDEVKGTGPK
                     GRITQQDVEGFVKGVMAGSVQTRAQAAKAAPGAAAGGAFPGLLAWPQVDFAKFGPVER
                     KDLSRIKKISGANLHRNWVLIPHVTNHDDADITDLESFRIQTNKENEKSGIKVTMLAF
                     LIKACVAALKKFPEFNASLDGEQIVLKQYFHIGFAADTPNGLMVPVIKDADRKGVLQI
                     SQEMGELAKKAREGKLSPTEMSGGCFSISSLGGIGGRYFTPIINAPEVAILGVCKSST
                     EPVWDGKAFQPRLVLPLSLSWDHRVVDGAAAARFNAYLGQILADFRRVLL"
     gene            3238..>3468
                     /locus_tag="VF308_13550"
     CDS             3238..>3468
                     /locus_tag="VF308_13550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010458388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEX7437729.1"
                     /translation="MALIDIQVPDIGDFKGVSIIELLVKAGDTIKAEQSLITVESDKA
                     SMEIPSSHAGVVKELKVKIGDVVNQGSLILTLE"
BASE COUNT          641 a         1153 c         1172 g          502 t
ORIGIN      
        1 cctgctcgtg aagacggtca agggcttcgg catgggcaag agcggcgagg gcaagaacac
       61 cgcgcaccag accaagaagc tcgtcgacga ggacgtgaag acgttccgcg atcgctggaa
      121 cattccgatt cccgacgaca agctgcccga catcccgttc tacaagccgg ccgacgacac
      181 gccggaaatg cgctatctgc acgagcgccg ccaggccctc ggcggctacc tgccgaagcg
      241 ccgcgtgcgc gccgacgagc agttgaaggt gccggcgctc gagaccttca aggcggtgct
      301 cgacgccacc gtcgaaggcc gcgagatctc gaccacgcag gcgttcgtgc gcttcctgac
      361 gcagctgctg cgcgacaagg aactgggccc gcgcgcggtg ccgatcctgg tcgacgaggc
      421 gcgcaccttc ggcatggaag ggctcttccg gcagatcggc atctacaacc cggcgggcca
      481 gaactacacc ccggtcgacc gcgaccaggt catgtactac cgcgaggaca agtccggcca
      541 ggtgctgcag gaaggcatca acgagccggg cggcatgagc agctggatcg ccgcggcgac
      601 ctcgtactcg accaacaacc gcatcatggt gccgttctac gtgtactact cgatgttcgg
      661 cttccagcgc gtcggcgacc tggcctgggc cgcgggcgac atgcaggcgc gcggcttcct
      721 gctcggcggc acctcgggcc gcaccacgct caacggcgag ggcctgcagc acgaggacgg
      781 ccacagccac atcctcgccg gcacgatccc gaactgcgtc agctacgacc cgacgttcgc
      841 gcacgaggtc ggcgtgatcc tgcaccacgg cctggtgcgc atggtcgaga agcaggacaa
      901 cgtctactac tacctgaccc tgctcaacga gaactacccg atgccgggcc tcacgcccgg
      961 caccgaggaa gagatcatca agggcatgta cctgctgcgg gagggcgcga agaagacgcc
     1021 gcgcgtcaac ctgctcggca gcggcacgat cctgcgcgaa agcctgttcg cgcaggagtt
     1081 gctcgatgcc gactggggcg tggccgccaa cgtctggagc tgcccgagct tcaacgagct
     1141 ggcgcgcgac ggccaggacg cggagcgctg gaacctgctc catccgaccc ggccaccgcg
     1201 ggtcccgttc gtgacccagc agctcgagaa ggttgccggt ccggtcgtcg cttcgaccga
     1261 ctacatgaag cagtacgccg accaaatccg cgccttcatt ccgaaggggc gcagctacaa
     1321 ggtgctcggc accgacggct tcggtcgcag cgattttcgc accaagctgc gcgagcactt
     1381 cgaggtcgac cggcactacg tcgtcgtcgc tgcgctgaag gcgctcgccg acgaaggcac
     1441 ggtgccgatg gcgacggtgg cagaggcgat cggcaggtac gcgatcaacg ccgacaagat
     1501 caatccactg tacgcctagg gcctgtgcag aaaacgctgg agacaagaac atggcgctgg
     1561 tggaagtcaa ggttccggac atcggtgact tcaaggaggt cgaggtcatc gagttgctcg
     1621 tcaaggcggg cgatcggatc aaggccgagc agtcgctgat cacggtcgag agcgacaagg
     1681 cgtcgatgga gattccgtcg tcgcacgccg gggtggtcaa ggagttgcgc gtcaagatcg
     1741 gcgacaaggt cggcgagggc tccgcggtgc tgatgctcga ggccgacgac gccggcgcgg
     1801 cggcgggcga gggcgccagg ccgaccccgg cgcaacccgc cggggtcgct gcgccggcag
     1861 cgccgccggc ccctgccgcc accgaatcgg cccctgccgc caccgaatcg gccgcggccg
     1921 gtgcgccgat cgaagtcctc gttcccgaca taggcgactt cgccgaggtc gcggtgatcg
     1981 aggtgatggt caggcccggc gacagcgtca aggtcgagca aagcctcatc accgtcgaga
     2041 gcgacaaggc gtcgatggag attccttcgt cgcacgcggg tgtcgtgaag gaggtgcggg
     2101 tcaaggtcgg cgacaaggtc tcgaagggca gcccggtcgt gctcgtcgag gcggccggcg
     2161 gcgcccaggc cgcatcgggg ctggccgctg tcgcgggccc ggcagcgcgc tcgtccgctc
     2221 ccgcggcggc caccgagaaa cacgtgccga ccgccgcctt gcccgcgcct gagccgagcg
     2281 cgccccaggg cgcgttgccg cacgcctcgc cctcgatccg aaagctcgcg cgcgagctcg
     2341 gcatgccgct cgacgaggtc aagggcaccg gcccgaaggg ccgcatcacg cagcaggacg
     2401 tcgagggctt cgtgaagggc gtgatggccg gcagcgtgca gacccgcgcg caggccgcga
     2461 aggcggctcc cggcgccgcg gccggcggcg cgtttcccgg cctgctggcg tggccgcagg
     2521 tcgacttcgc gaagttcggc ccggtcgagc gcaaggactt gtcgcgcatc aagaagatca
     2581 gcggcgccaa cctgcaccgc aactgggtcc tgatcccgca cgtcacgaat cacgacgatg
     2641 ccgacatcac cgatctcgaa tcgttccgca tccagaccaa caaggagaac gaaaagtccg
     2701 gcatcaaggt cacgatgctc gccttcctga tcaaggcctg cgtcgcggcg ctgaagaagt
     2761 ttcctgagtt caacgcatcg ctcgacggcg agcagatcgt gctgaagcaa tacttccaca
     2821 tcggctttgc cgccgatacg ccgaacggac tgatggttcc ggtgatcaag gacgccgaca
     2881 ggaagggcgt gttgcagatc tcgcaggaaa tgggcgagct cgcgaagaag gcgcgcgaag
     2941 gcaagctctc accgaccgag atgagcggcg ggtgcttctc gatctcgtcg ctcggcggca
     3001 tcggcgggcg ctacttcacg ccgatcatca atgcgccgga ggtggcgatc ctcggcgtct
     3061 gcaagagcag caccgagccg gtctgggacg gcaaggcgtt ccagccgcgt ctcgtcctgc
     3121 cgctcagcct gagttgggac caccgcgtcg tcgatggcgc cgccgcagcg cgcttcaacg
     3181 cctacctcgg ccagatcctg gcggacttcc gccgggtcct tctgtgaggg ccgcgcgatg
     3241 gcactgatcg acatccaggt ccccgacatc ggcgacttca agggcgtctc catcatcgaa
     3301 ctgctcgtca aggcgggcga caccatcaag gccgagcagt cgctgatcac tgtcgagagc
     3361 gacaaggcgt cgatggagat tccttcgtcg catgccgggg tggtgaagga actgaaggtc
     3421 aagatcggcg acgtcgtgaa ccaggggtcg ctgattctga cgctcgag
//
LOCUS       DASVHM010000738         2956 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1354499, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000738 DASVHM010000000
VERSION     DASVHM010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2956
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1354499"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..525)
                     /locus_tag="VF308_13555"
     CDS             complement(<1..525)
                     /locus_tag="VF308_13555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007837777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEX7437730.1"
                     /translation="MKAVEITSYGAPDVLRLTERPRPAPGAGEALIRVAASGVNRPDV
                     LQRKGLYPVPPGASDLPGLEVAGVIEAGDERALASAGFKLGDRVCALVAGGGYAELCV
                     APIGQCLPVPAGLSDIEAASLPETFFTVWSNVFDRARLQAGDTFLVQGGTSGIGVTAI
                     QLARAAGATVIATAG"
     gene            complement(575..2698)
                     /gene="pnp"
                     /locus_tag="VF308_13560"
     CDS             complement(575..2698)
                     /gene="pnp"
                     /locus_tag="VF308_13560"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006296485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEX7437731.1"
                     /translation="MSMFNKVTKTFQWGQHSVTLETGEIARQAGGAVVVSVEGTVVLA
                     TVVAAKNAKPGQDFFPLTVDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPLR
                     PLFPEGFYNEVQVVIHVLSLNPEVSADIPALIGSSAALAISGIPFNGPIGAARVGYID
                     GQYVLNPGKTQLVDSKMDLIVAGTEAAVLMVESEAKQLSEEIMLGGVVFGHEQGNVAI
                     NAIHELVRDAGKPAWEWAAPAKDEAFIAKVVALAEQPLREAYQIHSKQARTQATRAVT
                     ATTVAALQGEAGEFDKVKLDNVLFDIEAKIVRSQILAGEPRIDGRDTRTVRQIEIRSG
                     VLPRAHGSALFTRGETQALVAATLGTARDSQRIDALAGEYTEHFMLHYNMPPFATGET
                     GRVGTPKRREIGHGRLAKRALVAVLPSQTDFPYSMRVVSEITESNGSSSMASVCGGCL
                     ALMDAGVPLTAHVAGIAMGLIKEGNRFAVLTDILGDEDHLGDMDFKVAGTTAGVTALQ
                     MDIKIQGITKEIMQVALAQAKEARLHILGKMTEAMGGAKAEVSQFAPRLYTMKINPEK
                     IRDVIGKGGSTIRALTEETGCTIDIGEDGTITIASTEADKAAHAKRRIEEITAEVEVG
                     KVYEGPVTKILDFGALVNLMPGKDGLLHISQIAHQRVEKVTDYLKEGQIVRVKVLETD
                     EKGRVKLSMKALLDRDQQPAMAHHE"
BASE COUNT          440 a          980 c          985 g          551 t
ORIGIN      
        1 gccggcggtc gcgatcacgg tcgcgccggc cgccctggca agctggatcg cggtcacgcc
       61 gattccgctc gtgccgccct gcaccagaaa cgtgtccccc gcctgcaggc gggcgcggtc
      121 gaaaacgttc gaccagaccg tgaaaaaggt ctccggcagg ctcgcggcct cgatgtcgct
      181 gaggcccgcg ggcaccggca ggcattgccc gatcggtgcg acgcagagtt cggcatagcc
      241 gccgccggcg acgagcgcgc aaacccggtc gccgagcttg aagccggcgc tcgccagcgc
      301 gcgctcgtca cccgcttcga tgaccccggc cacttcgaga cccggcaggt ccgatgcgcc
      361 cggtggcacc gggtacaagc ccttcctttg cagcacgtcg ggccggttga cgcctgacgc
      421 cgcgacacgg atcagggcct cgcccgcgcc gggcgcgggg cgcggtcgct cggtcaggcg
      481 cagcacatcc ggcgcgccgt aggaagtgat ctcgactgct ttcatgcggt atcgccccgg
      541 tgagcgggcg ccctcgggcg cgccgaacgc ggcatcactc gtggtgcgcc atcgccggct
      601 gctggtcccg atccagcagc gccttcatcg acagcttgac gcgacccttc tcgtcggtct
      661 cgaggacctt gacgcggacg atctggcctt ccttcaggta gtcggtgacc ttctcgacac
      721 gctggtgcgc gatctggctg atgtgcagca ggccgtcctt gccgggcatc aggttcacga
      781 gggcgccgaa atcgaggatc ttcgtgaccg ggccttcgta gaccttgccg acttcgacct
      841 cggcggtgat ttcctcgatg cgcctcttcg catgcgcggc cttgtcggct tcggtcgacg
      901 cgatcgtgat cgtgccgtcc tcgccgatgt cgatcgtgca gccggtttcc tcggtcagcg
      961 cacggatcgt cgaaccgccc ttgccgatca cgtcgcggat cttttccggg ttgatcttca
     1021 tcgtgtagag gcgcggcgcg aactgcgaca cctcggcctt ggcgccaccc atggcttcgg
     1081 tcatcttgcc gaggatgtgc aggcgcgctt ccttggcctg tgccagcgcg acctgcatga
     1141 tttccttggt gatgccctgg atcttgatgt ccatctgcag cgccgtgacg cccgccgtgg
     1201 tgccggcgac cttgaagtcc atgtcgccga ggtgatcctc gtcgccgagg atgtcggtca
     1261 gcaccgcgaa acgattgcct tccttgatca ggcccatcgc gatgccggcg acgtgcgccg
     1321 tgagcggcac gccggcatcc atcagggcga ggcagccgcc gcacaccgac gccatcgacg
     1381 aggaaccgtt cgattcggtg atctcggaga cgacgcgcat cgagtacgga aagtcggtct
     1441 ggctcggaag cacggcgacg agagcacgct tggcgaggcg tccgtggccg atctcgcggc
     1501 gcttcggggt gccgacacgg ccggtttcgc cggtcgcgaa cgggggcatg ttgtagtgga
     1561 gcatgaagtg ctcggtgtac tcgccggcga gtgcgtcgat gcgctgcgag tcacgcgcag
     1621 tgccaagcgt cgcggccacc agcgcctggg tttcgccccg ggtgaagagg gccgagccat
     1681 gggcgcgcgg cagcacgccg ctcctgatct cgatctggcg caccgtgcgc gtgtcgcggc
     1741 cgtcgatgcg cggctctccg gcgagtatct ggctgcgcac gatcttggct tcgatgtcga
     1801 acagcacgtt gtcgagcttg accttgtcga actccccggc ttcgccctgc agtgcggcga
     1861 cggtcgtcgc cgtgacggcg cgggtggcct gggtgcgcgc ctgcttcgaa tggatctgat
     1921 aggcctcgcg cagcggctgc tcggccaggg cgacgacctt ggcgatgaag gcttcgtcct
     1981 tcgccggcgc cgcccattcc caggccggct tgccggcatc gcgcaccagc tcgtggatcg
     2041 cgttgatcgc gacgttgccc tgctcgtggc cgaacaccac gccgccgagc atgatctctt
     2101 cgctcagctg cttggcttcg ctttcgacca tcagcacggc ggcttcggtg ccggcgacga
     2161 tcaggtccat cttcgaatcg accagctgtg tcttgcccgg gttcagcacg tattggccgt
     2221 cgatgtagcc gacccgcgcg gcaccgatcg gaccattgaa cggaatgccc gaaatggcca
     2281 gcgccgcgct cgagccgatc aaggccggga tgtcggcaga gacttccggg ttcagggaca
     2341 gcacgtggat gacgacctgg acctcgttgt agaagccttc cggaaagagc ggccggagcg
     2401 gccggtcgat caggcgcgaa gtcagggtct cgagttcgct cggacgaccc tcgcgcttga
     2461 agaagctgcc cggaatcttg cccgcggcat aagtcttctc gatgtagtcg acggtcagcg
     2521 gaaagaagtc ctggccgggt ttcgcattct tcgcggcgac gaccgtcgcg agcacgacgg
     2581 tgccttcgac gctgacgacc acggcgccgc cggcctggcg cgcgatctcg ccggtttcca
     2641 gcgtgacgct gtgttgaccc cattggaacg tcttggtcac tttgttgaac atgctcatgc
     2701 gtctagtctc cggtggttgg ctgtgccttc agggtggcac tctcgacccg gaacgcagga
     2761 cctgcgggca cgatgccatt ccaaagttgc tcccgggggg aacatcggtg gaatgacaca
     2821 gcagcgccgg ctgtccttgg ctccaaattc agaaaagcga aaagcctgcg ctggcgaatt
     2881 ccagacaggc tctcgtcatg tgcggcgcgc ttacttgcgc agaccgagct tctggatcag
     2941 cgcggtgtag cgatcg
//
LOCUS       DASVHM010000739         2247 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_920943, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000739 DASVHM010000000
VERSION     DASVHM010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2247
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_920943"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..462
                     /locus_tag="VF308_13565"
     CDS             <1..462
                     /locus_tag="VF308_13565"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX7437732.1"
                     /translation="ASGRYGQNPKATQGFLFGGGPTSTSTSFGINISYPIFNNYSREQ
                     TLILARIGEDNAEANLRDAKFLAQQNLTTYLVNYNTAQQTIALQLLQIQSATENLRVQ
                     TQRYNIGTALQVDVTTAQAALDLARFNLIQARLNARIAKANIEALIGRDLK"
     gene            530..>2247
                     /locus_tag="VF308_13570"
     CDS             530..>2247
                     /locus_tag="VF308_13570"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX7437733.1"
                     /translation="MNRNILYLALIAAVGCTSSATKAVPIQTATIQRRDIIVTAEATG
                     VIEPINVVEVKSKTASGQVTEMPIDIGYFVKPGDLIVQIDTTILHQQFVQATADFTSA
                     DANLKVSDAQLKRQQALYGQHIITMDVLESAQTQFASATALFTNKRANLDLAKQALID
                     ARVTATVVGTILTKPVSIGQVIQAGGTSVSGGTVIATMADLTKVRSRALVAETDIGMV
                     KPGQDVNVTIDAFPDHPFLGKVDHIEPQATVQQNVTMFATLVSLDNSEGLLHPGMNGE
                     VSIIADTRLDAIAVPNDAIRSPREATQAAALLGLNPDSVKAQMRGPGGGGGGQGGGQG
                     GQGRGGRGGAGGSSGPGRQVQISNGELALPLQGGGQGGGMRGGRGPQVQVTDADCKKV
                     DAAMKKKPVVAKKIEDMRSKMRDATDRQKAMDDMKAAYAELGVDMQVSGACARRARSG
                     NAGGAAGAGGARTGRGGMGGGAGAAGASGGAGGGQGGRFGQQGNSRTRPRTGLVFIQR
                     GATWEAKTVRLGVANYDYTEVLDDGLKEGDKVAMLSAAALQATRQAQNDRMKAGASPL
                     GGSAPAG"
BASE COUNT          438 a          759 c          748 g          302 t
ORIGIN      
        1 gcgagcggcc ggtacgggca gaaccccaag gccacgcagg gattcctgtt cggcggcggt
       61 ccgacgtcga cgagcacaag cttcggaatc aacatctcat acccgatctt caacaactat
      121 tcgcgcgaac agacgctcat cctcgcgcgc atcggcgaag acaacgccga ggcgaacctg
      181 cgcgacgcaa agttcctcgc gcagcagaac ctcacgacct acctcgtgaa ttacaacacg
      241 gcgcagcaga ccatcgcgct gcagctcctg cagatccagt cggccaccga gaatctccgc
      301 gtgcagacgc agcgctacaa catcggcacc gcgctgcagg tcgacgtcac cacggcccag
      361 gccgcgctcg acctcgcccg tttcaacctg atccaggcgc gcctcaacgc gcgcatcgcg
      421 aaagccaata tcgaggccct catcggccgc gacctcaagt agcgcgcccg catctcgcat
      481 tccttttctg cattccgcat ctaagccgag tctccatccg gagtttgctg tgaaccgcaa
      541 tatcctgtat ctcgcactca tcgccgccgt cggctgcacg tcgtccgcca cgaaggcggt
      601 gccgatccag accgccacca tccagcgccg cgacatcatc gtgaccgccg aggccacggg
      661 cgtcatcgaa ccgatcaacg tcgtcgaggt gaagtcgaag acggcgtcgg gtcaggtgac
      721 cgagatgccg atcgacatcg gctacttcgt gaagccgggc gacctgatcg tgcagatcga
      781 caccaccatc ctgcaccagc agttcgtgca ggccacggcg gacttcacgt cggccgacgc
      841 gaacctcaag gtgtcggatg cccagctgaa gcgtcagcag gctctctacg gacagcacat
      901 catcacgatg gacgtgctcg agtccgcgca aacgcagttt gcgagcgcca ccgcgctctt
      961 cacgaacaag cgcgcgaacc tcgacctcgc caagcaggcg ctcatcgatg cgagggtgac
     1021 ggcgacggtg gtcggcacga tccttacgaa gcccgtgtcg atcggccagg tgatccaggc
     1081 cggcggcacg tcggtgagcg gcggtacggt gatcgcgacg atggccgacc tcacgaaggt
     1141 ccgctctcgc gcgctcgtgg ccgagacgga catcggcatg gtgaagcccg ggcaggacgt
     1201 gaacgtgacg atcgacgcct tccccgacca tccgttcctc ggaaaggtcg accacatcga
     1261 gccgcaggcg acggtacagc agaacgtcac gatgttcgcg acgctcgtct cgctcgacaa
     1321 cagcgaaggt ctgctgcatc ccggcatgaa cggcgaggtc tcgatcatcg ccgacacgcg
     1381 tctcgacgcc atcgcggtgc cgaacgacgc gatccgctcg ccgcgtgaag ctacgcaggc
     1441 cgcggcgctc ctcggactca accccgactc ggtcaaggcg cagatgcgcg gcccgggtgg
     1501 cggtggcgga ggccaaggcg gtggccaggg cggccagggc cgcggcggac gcggtggcgc
     1561 tggtggttca agcggtccgg gtcggcaggt tcagatcagc aacggcgagc tcgcgcttcc
     1621 tttgcagggc ggcggtcagg gcggcggcat gcgcggcgga cgcggcccgc aggtccaggt
     1681 caccgacgcc gattgcaaaa aggtcgatgc cgcgatgaag aagaagccgg tcgtggcaaa
     1741 aaagatcgag gacatgcgct cgaagatgcg cgacgcgacg gatcgccaaa aagcgatgga
     1801 cgacatgaag gccgcttacg cggaactcgg cgtcgacatg caggtctccg gcgcgtgcgc
     1861 acgcagggcc cgcagcggta atgccggcgg cgcggcggga gcaggtggag ctcgcacggg
     1921 ccgcggcgga atgggtggcg gcgccggcgc agcgggtgcg agcggcggcg caggcggcgg
     1981 acagggcggc cgcttcggcc agcagggcaa cagccgcacg cgcccgcgca cgggcctcgt
     2041 gttcatccag cgcggcgcga catgggaagc caagacggtc cgcctcggcg tcgcgaacta
     2101 cgactacacc gaagtgctcg acgacggcct gaaggaaggg gacaaggtcg cgatgctcag
     2161 cgccgcggca ctgcaggcca cgcgccaggc ccagaacgac aggatgaagg ccggtgcgag
     2221 cccgctgggc ggcagcgcgc cggctgg
//
LOCUS       DASVHM010000740         1971 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_125924, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000740 DASVHM010000000
VERSION     DASVHM010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125924"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..590)
                     /locus_tag="VF308_13575"
     CDS             complement(<1..590)
                     /locus_tag="VF308_13575"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7437734.1"
                     /translation="MTGAVDSVAPPRRTLVAFGAVSFTYFAYAGLFGTYAPLWFQSLG
                     YTTLSIGVLASVQSATRVLSPYAWGWVADHTGQRARVLRVAVGFSLLCACGFLVAPAY
                     GWVMGVTAALFLCTAGVVPISEAAVAHFVSRGAALDARRYGRVRVWGSVGFILAVSAS
                     GYALQWFGVGRFPFLVIALLALLLVAALRLPVLPEAA"
     gene            complement(587..1687)
                     /gene="aroC"
                     /locus_tag="VF308_13580"
     CDS             complement(587..1687)
                     /gene="aroC"
                     /locus_tag="VF308_13580"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEX7437735.1"
                     /translation="MSGSTFGHLFRVTNFGESHGPAIGCVIDGCPPGLTLSAADIQPE
                     LDRRRPGTSRHVTQRNEPDTVEILSGLYEGLTTGTPICLLIRNTDQRSKDYGNILDTF
                     RPGHADYTYLHKYGLRDPRGGGRASARLTAPMVGAGAVARKWLKEKHGTTFAGHMTQI
                     GAIEIPFESMDHVPNNPFFAANATDIPRIEAYMDELRKAGDSCGARIAVVARQVPVGL
                     GDPLFDKLDAAIAHAMMGINAVKGVEIGAGFAAIAQRGTTHGDELTPEGFLGNNAGGV
                     LGGISTGQDITVSIAVKPTSSIRSPRRSIDRAGKPTVVETFGRHDPCVGIRATPIAEA
                     MLALVLMDHALRHRAQCGDVSVATPPIPARAP"
     gene            complement(1687..>1971)
                     /locus_tag="VF308_13585"
     CDS             complement(1687..>1971)
                     /locus_tag="VF308_13585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX7437736.1"
                     /translation="KNGGALGKALVSSVMDDHPLTCTPDTEIDEVRRMMLGRHARYMP
                     VMTQRTLMGVISFYDVAKAVVDSQDFENRMLKAYIRDWPVEDRDEQASSN"
BASE COUNT          317 a          646 c          719 g          289 t
ORIGIN      
        1 gcagcctcgg gcagcaccgg caggcgaagg gcggccacta gcagcagggc gagcaacgcg
       61 atcaccaaga acgggaagcg gccgaccccg aaccattgca gcgcgtagcc gctcgcgctc
      121 acggcgagga tgaagccgac cgacccccac acccggaccc ggccgtaacg ccgggcgtcg
      181 agcgcggcgc cgcggctgac gaagtgcgcg acggcggcct cgctgatcgg gaccacgccg
      241 gcggtgcaga gaaagagtgc cgcggtcacg cccatgaccc acccataggc cggcgcgacc
      301 aggaagccgc acgcacacag caacgaaaac ccgaccgcga cgcgcagcac ccgggcgcgc
      361 tgaccggtgt gatcggcgac ccagccccag gcgtaggggc tcaggacccg cgtcgcgctc
      421 tgcaccgacg cgagcacgcc gatcgagagc gtggtgtagc cgaggctctg aaaccagagt
      481 ggcgcgtagg tgccgaacag gccggcgtac gcgaagtagg tgaacgagac ggcgccgaac
      541 gcgaccagcg tgcgccgcgg tggcgcgacg gaatcgacgg cgccggtcaa ggcgcgcgcg
      601 cggggatggg cggggtcgcg accgacacgt cgccgcattg cgcgcggtgg cgcagtgcgt
      661 gatccatcag caccagcgcg agcatcgctt cggcgatcgg cgtcgcccga atgccgacgc
      721 agggatcgtg gcgcccgaag gtttcgacga cggtcggttt gccggcgcgg tcgatcgagc
      781 ggcgcggact gcggatcgag ctcgtcggct tgaccgcgat cgacaccgtg atgtcctgcc
      841 cggtggatat gccgccgagt acgccgcccg cgttgttgcc gaggaagccc tcgggcgtga
      901 gttcatcgcc atgggtcgtg ccgcgctgcg cgatggctgc gaagccggca ccgatctcga
      961 cgcccttgac cgcgttgata cccatcatcg cgtgcgcgat cgcggcatcg agtttgtcga
     1021 agagcggatc gccgaggccg accgggacct ggcgcgcaac cacggcgatg cgcgcgccgc
     1081 agctgtcgcc ggccttgcgc agctcgtcca tgtaggcctc gatgcgcggg atgtccgtcg
     1141 cgttggcggc gaagaacggg ttgttgggca cgtggtccat cgactcgaac gggatctcga
     1201 tggcgccgat ctgcgtcatg tggccggcga aggttgtgcc gtgcttctcc ttgagccatt
     1261 tgcgcgccac cgccccggcg ccgaccatcg gcgcggtgag ccgggccgac gcacggccgc
     1321 cgccgcgcgg atcgcgcagg ccgtacttgt gcagataggt gtagtcggcg tgcccgggac
     1381 gaaaggtgtc gaggatgttg ccgtagtcct tgctgcgctg gtcggtgttg cggatcagca
     1441 ggcagatcgg cgtgccggtg gtgaggccct cgtagagacc cgacaggatc tcgacagtgt
     1501 cgggctcgtt gcgctgggtc acgtggcgcg aggtgccggg gcgccgtcga tcgagctcgg
     1561 gctggatgtc ggctgcggac aacgtcaggc ccggcggaca gccgtcgatc acgcagccga
     1621 tcgccggccc gtggctttcg ccgaaattgg tgacccgaaa caggtggccg aaggtgctgc
     1681 cagacatcag ttcgacgacg cctgctcgtc gcgatcttcg acgggccagt cgcggatgta
     1741 ggccttgagc atgcggttct cgaagtcctg gctgtcgacc acggccttgg cgacgtcgta
     1801 gaacgagatc acgcccatca gggtgcgctg cgtcatcacc ggcatgtagc gggcatggcg
     1861 gcccagcatc atgcgccgga cctcgtcgat ctcggtatcg ggggtgcagg tgagcggatg
     1921 gtcgtccatc acgctgctca ccagggcttt gccaagcgcc ccgccgttct t
//
LOCUS       DASVHM010000741         2834 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_269375, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000741 DASVHM010000000
VERSION     DASVHM010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2834
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269375"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(232..2262)
                     /locus_tag="VF308_13590"
     CDS             complement(232..2262)
                     /locus_tag="VF308_13590"
                     /EC_number="6.2.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030729 - acetoacetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019287 - isopentenyl diphosphate
                     biosynthetic process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetate--CoA ligase"
                     /protein_id="HEX7437737.1"
                     /translation="MTLPEPRITRYTRWLAQTRGLEFDPTTVSGYDALWRWSVTDLRS
                     FWASIWDYFDIESPTPCQSVLADEVMPGARWFTGAQVNYARQVLRHADAAHAAGHPAI
                     LFQNEAMAERGELTQISWPELRRQVASLAAALTRIGVRPGDRVGAFLPNTPHTAVAFL
                     AVASLGAIWSVCSPDMGPVAVLDRFRQIEPKVLIACDGYRYGGAAFDRTEVLRGLLAE
                     LPSVRDVVLLRYLDPAADPAALAAGGRAVHDFAEATAGDAVFEPVWLPFDHPLWVVYS
                     SGTTGLPKPIVHGHGGVMLEALKLGLHNNIGASVDTGDRFHWYSTTGWIMWNCQMAGL
                     LSGTTICLFDGSPAGRAGAPDWSVLWRFVAATRTTFFGAGAAFYASCLKAGVTPGKLD
                     LGALRALGSTGSPLAIECYRWVYEHVPKVDGRHIWLTPMSGGTDFAGAFIAGLPTLPV
                     VEGEMQCRCLGAAVEAWSEPDASGRGRALIDEVGELVCIKPMPSMPLYFWGDADGRRY
                     HDSYFDMYPGVWRHGDWIRITPRGGAIIYGRSDATINRHGIRMGTAELYRAVETLPEV
                     LDSLVVDLEYLGRESYMPLFVVLREDLTLDEDLTKRLKASIRTALSARHVPNEIFQVA
                     AIPRTLSGKKMELPVKKLLMGTPAEQVFKLDAMANATSVAWFTEFARRRGAA"
     gene            complement(2281..>2834)
                     /locus_tag="VF308_13595"
     CDS             complement(2281..>2834)
                     /locus_tag="VF308_13595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bicyclomycin resistance protein"
                     /protein_id="HEX7437738.1"
                     /translation="GYVDRDGDGWRELPDGRPLVIDYATQPDQISRQFDELWKKNMDA
                     VGVRLNLEKGQWPEQLKKARAGKLMVWQLGLSASSPDVQDGFQSLFGPSSGGQNLSRF
                     KLPAFDALYTRMQTLPDGPERLAAIAEANRLATAYMPQKYNVHRIITDLTQPWLIGYR
                     RPPFGNQFWQYVEVDPARRPPTN"
BASE COUNT          458 a          958 c          981 g          437 t
ORIGIN      
        1 gcctcgaatc ggagggcagg agccgcccgg ccctcaggag aagtcatgcg tccattctag
       61 ggagcgaccc ccacgatcct cgacaatgcg cggctgaagt cgccactgtg ggcgcgggcg
      121 ccgcgctttt ccgagcagca cgcgctggcc gagcgccgct gatcttccac ggcggtcgct
      181 acttcacgga gctgccgttg tagagccgtc gaaggcgagt gggccgcgtc ttcaggcggc
      241 gccccgccgc cgcgcgaatt cggtgaacca ggcgacgctc gttgcgttgg ccatcgcgtc
      301 gagcttgaag acctgctccg cgggcgtgcc catcagcagc ttcttcacgg ggagttccat
      361 cttcttgccc gatagcgtgc gcgggatcgc ggcgacctgg aagatctcgt tcggcacatg
      421 gcgcgccgag agcgcggtcc tgatgctcgc cttcaggcgc ttcgtcagat cctcgtccag
      481 cgtgagatcc tcgcgcagca cgacgaagag cggcatgtag ctctcgcggc cgaggtattc
      541 gagatcgacg acgaggctgt cgagcacctc gggcagcgtc tcgaccgcgc gatacagctc
      601 ggccgtgccc atgcggatgc cgtggcggtt gatcgtcgcg tcgctgcggc cgtagatgat
      661 cgcgccgccg cgcggcgtga tgcggatcca gtcaccgtgg cgccagacgc ccgggtacat
      721 gtcgaagtag ctgtcgtgat agcgacggcc gtcggcgtcg ccccagaagt agagcggcat
      781 cgaaggcatc ggcttgatgc agacgagttc gccgacttcg tcgatcaggg cgcgccctct
      841 tccgctcgca tcgggctcgc tccaggcctc gaccgccgca ccgagacagc ggcactgcat
      901 ctcgccttcc acgaccggca gcgtcggcag cccggcgatg aaggcgccgg cgaaatcggt
      961 gccgcccgac atcggcgtga gccagatgtg gcgcccgtcg accttcggca cgtgctcgta
     1021 gacccagcga tagcattcga tcgcgagcgg cgaaccggtc gagcccaggg cgcgcagcgc
     1081 gcccagatcg agcttgccgg gcgtgacgcc ggccttcagg cagcttgcat agaaggccgc
     1141 gccggcaccg aagaacgtcg tccgggtcgc ggcgacgaag cgccacagca ccgaccagtc
     1201 gggggcaccg gcgcgccccg ccgggctgcc gtcgaagagg cagatggtgg tgccgctgag
     1261 caggcccgcc atctggcagt tccacatgat ccagccggtc gtgctgtacc agtggaagcg
     1321 gtcgccggtg tcgacgctcg caccgatgtt gttgtgaagg ccgagcttca gcgcctcgag
     1381 catcacaccg ccatggccgt gcacgatcgg cttcggcaaa ccggtcgttc cgctcgaata
     1441 gacgacccag agcggatggt cgaatggcaa ccacactggc tcgaacacgg cgtcgcccgc
     1501 cgtcgcttcg gcgaagtcgt gcactgcacg gccgccagcc gccagcgcgg ccggatcggc
     1561 cgcggggtcg aggtagcgca acagcacgac atcgcgcacg ctcggcagct cggcaagcag
     1621 gccgcgcagc acctcggtgc gatcgaacgc ggcgccgccg tagcggtagc cgtcgcaggc
     1681 gatcagcacc ttcggctcga tctggcgaaa gcggtcgagc accgcgaccg gccccatgtc
     1741 gggcgaacac accgaccaga tcgcgcccag gctcgccacc gcgaggaacg cgaccgccgt
     1801 gtgcggcgtg ttcggcagga acgcgccgac ccggtcgccg ggccgcacgc caatccgcgt
     1861 caacgcggcc gcgagcgacg cgacctggcg tcgcaattcg ggccagctga tctgggtgag
     1921 ctcgccgcgt tcggccatgg cttcgttctg gaacaggatc gccgggtggc ccgcggcgtg
     1981 cgccgcatcg gcatgacgca acacctggcg cgcgtagttg acctgcgcgc cggtgaacca
     2041 tcgggcgccc ggcatcacct cgtcagccag gacgctctgg cagggggtcg gcgattcgat
     2101 gtcgaagtag tcccagatcg aggcccagaa cgagcgcagg tcggtgaccg accagcgcca
     2161 gagcgcgtcg tagccggaaa cggtcgtcgg gtcgaactcg agcccgcgcg tttgcgcgag
     2221 ccagcgcgtg tagcgcgtga tccggggctc gggcagggtc atggcgatcc gcagtgaagt
     2281 tcagttcgtc ggcggccgcc tggccggatc gacctcgacg tattgccaga actggttgcc
     2341 gaacggcggg cggcggtagc cgatgagcca gggctgggtc aggtcggtga tgatgcggtg
     2401 gacgttgtac ttctgcggca tgtaggcggt tgcgaggcgg ttggcctctg cgatcgccgc
     2461 cagccgctcg gggccgtcgg gcagcgtctg catccgcgta tagagggcgt cgaacgccgg
     2521 caacttgaag cgactgaggt tctgaccacc cgaagacggc ccgaagaggc tctggaagcc
     2581 gtcctgcacg tcgggcgaag aggccgacaa gccgagctgc cagaccatca gcttgccggc
     2641 ccgggccttc ttcagctgct ccggccattg acctttctcg agattgagcc gcacaccgac
     2701 cgcgtccatg tttttcttcc acaactcgtc gaactggcgc gagatctggt cgggctgcgt
     2761 cgcgtagtcg atcaccaggg ggcgcccgtc ggggagctcc cgccagccgt cgccatcgcg
     2821 gtccacataa ccat
//
LOCUS       DASVHM010000742         2452 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_415001, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000742 DASVHM010000000
VERSION     DASVHM010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415001"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..901)
                     /locus_tag="VF308_13600"
     CDS             complement(5..901)
                     /locus_tag="VF308_13600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEX7437739.1"
                     /translation="MDKPSVAAVRTFPTAQEDAEKEVVSPNARYEGPESAYRLAFTDV
                     DFLLREELRPIRLQLELLKPELVQDEQGVEATIVFFGSARIVAPEVAELELAAARGSG
                     DPAALKVAQTRVAMSRFYEEARRFAAIVTRRSTSLDKPIYVVTGGGPGIMEAGNRGAF
                     EVGGKSIGLNIVLTHEQIPNRYITPELCFQFHYFALRKMHFLMRAIALVCFPGGFGTL
                     DELFEVLTLVQTGKSRMRPILLFGREFWTRLIDFDLLIESGMIAADDVKLFHFVETAE
                     EAWALLVSEYGYDQPGELALDI"
     gene            997..1278
                     /locus_tag="VF308_13605"
     CDS             997..1278
                     /locus_tag="VF308_13605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008159569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEX7437740.1"
                     /translation="MIHCVLHDAGDTVAVVVVEGVTAGTPMTGWVMDDDRTIALEARQ
                     DIPICHKVALKDMAPGDTVVKYGIDMGKVTAPIRRGEHAHVHNIKTKRW"
     gene            1290..2312
                     /locus_tag="VF308_13610"
                     /pseudo
     CDS             1290..2312
                     /locus_tag="VF308_13610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015866595.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
     gene            complement(2301..2452)
                     /locus_tag="VF308_13615"
                     /pseudo
     CDS             complement(2301..2452)
                     /locus_tag="VF308_13615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011507064.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="D-galactarate dehydratase"
BASE COUNT          438 a          824 c          828 g          362 t
ORIGIN      
        1 gtgcctagat atcgagcgcg agctcgcccg gctggtcgta gccgtactcg gagacgagca
       61 gggcccacgc ttcctcggcg gtctcgacga agtggaacag cttgacgtcg tcggccgcga
      121 tcatgccgct ctcgatgagg agatcgaagt cgatcaggcg ggtccagaac tcgcggccga
      181 acagcaggat cggccgcatc cgcgacttgc ccgtctgcac cagcgtcagc acctcgaaca
      241 gctcgtcgag cgtaccgaag cccccgggaa agcagacgag ggcgatcgcg cgcatcagga
      301 agtgcatctt gcgcagcgcg aagtagtgga actggaagca gagctcgggc gtgatgtagc
      361 ggttcgggat ctgctcatgg gtgagcacga tgttcaggcc gatgctcttg ccgccgactt
      421 cgaaggcgcc gcggttgccg gcttccatga tccccgggcc gccgccggtg acgacgtaga
      481 tcggcttgtc gagcgaggtc gaacggcgcg tcacgatcgc cgcgaagcgg cgtgcctctt
      541 cgtagaagcg cgacatggcg acgcgcgtct gcgcgacctt cagcgccgcc ggatcgccac
      601 tcccgcgcgc cgccgcgagc tcgagctcgg cgacctcggg cgcgacgatc cgggcgctgc
      661 cgaagaaaac gatcgtcgcc tcgacgccct gctcgtcctg caccagctcg ggcttgagca
      721 gctcgagctg caggcgaatc gggcgcagct cctcgcgcag gaggaagtcg acgtcggtga
      781 aggcgagccg gtaggcgctc tcgggccctt cgtagcgggc gttcgggctg acgacttcct
      841 tctcggcatc ttcctgcgcg gtcgggaagg tgcggacggc ggcaacgctg ggcttgtcca
      901 tcgccggcta gcttacggca accccggacg gcaacggggc gcagggcgtg cgataggtcc
      961 gctagcatgg tcggaagatt gcaccaggag gccgccttga tccattgcgt attgcacgac
     1021 gccggcgaca cggtcgcggt ggtcgtcgtc gagggcgtta ccgccggcac gccgatgacc
     1081 ggctgggtca tggacgacga ccggacgatc gccctcgagg cgcgccagga catcccgatc
     1141 tgccacaagg tggcgctgaa ggacatggcg ccgggcgaca cggtcgtcaa gtacggcatc
     1201 gacatgggca aggtcacagc accgatccgc cgcggcgagc acgcccacgt ccacaacatc
     1261 aagaccaagc gctggtagaa ggcacacgca tgtccgtcgt ctcgaaagac accaccttcc
     1321 tcggctaccg gcgcgagaac ggccgcgtcg gcgtgcgcaa cttcgtcgtc gtcctgccgc
     1381 tcgacgacct ctcgaacgcc gccgccgagg cggtcgcgca caacatcaag ggcgcgctgg
     1441 cgatcccgca tccgtacggg cggctccagt tcggcgccga cctcgagctc cacttccgca
     1501 ccctgatcgg cgccggctgc aacccgaacg tcgccgcggt cgtcgtcatc ggcatcgagg
     1561 acagctggac caagaaggtc gtcgacggca tcgccgcgac cggcaagccc gtggtcggct
     1621 tcggcatcga gggccacggc gaccatgaca cgatcatgcg tgcctcgaag gcggcgcgcg
     1681 agtacgtgca gtgggcgagc gagaagcagc gcgagccgtg cccgatcgcc gagctctggg
     1741 tctcgaccaa gtgcggcgag agcgacacga cctcgggctg cggctccaac ccgaccgtcg
     1801 gcaacgcctt cgacaagctc catccgctcg gcaactacct ctgcttcggc gagacgaccg
     1861 agctcaccgg cggcgagcag atcgtcgccg cgcgctgcgc cagcgacgag gtgcgcaagc
     1921 agttcatgtt catgttcgac cgctaccaga aggtgatcga tcgccacaag acgagcgacc
     1981 tctcggactc gcagccgacc aagggcaaca tcgccggcgg cctgacgacg atcgaggaga
     2041 aggcgctcgg caacatccag aagatcggca aggtctgcac cgtcgacggc gtcatcgaca
     2101 aggccgagac gccgacgcac ccgggcctgt ggttcatgga ctcgtcgagc gcggccgccg
     2161 agatggtgac gctgtgcgcg gcctcgggct acgccgtcca cttcttcccg accggccagg
     2221 gcaacgtcat cggcaacccg atcctgccgg tgatcaagat ctgcgccaat ccgcgcacgg
     2281 tgcgtctgat gggcgagcac atcgacgtcg acgtgctccg acatggtgcg cacggtgcgc
     2341 gggttggccg agagcttgat caccggcagg atcgggttgc cgatgacgtt gccctgaccg
     2401 gtgggaaaga ggtgcaccac gaagccgctc gccgccagca gcgtgaccat tt
//
LOCUS       DASVHM010000743         2587 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_126284, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000743 DASVHM010000000
VERSION     DASVHM010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2587
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126284"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..471
                     /locus_tag="VF308_13620"
     CDS             <1..471
                     /locus_tag="VF308_13620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013519919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEX7437741.1"
                     /translation="ITFQVKQSGVPIDGRFRKFDAQVALDPKAPQTGTVAITVDTGSA
                     TVGFAESDAELPRAPWFDSTRFPRAVFRSSAIKGLGGGRFQAAGKLDLKGTPHDLAVP
                     VTIVQSGTQSTASGEFVVKRLDFRIGENEWADLSLVANDVRVRFKLVFTGLGPL"
     gene            496..1062
                     /locus_tag="VF308_13625"
     CDS             496..1062
                     /locus_tag="VF308_13625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013519918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEX7437742.1"
                     /translation="MRKTFIAAAFAAAAAGVAAEPVTFAIDPGHTVVTFEALHVNTST
                     QRGRIQAKEGSVVLDRAAKTGKADIVIDLTTLSAASSALEGTLKGERLFNVAQGPTAR
                     FVGDTFTFDGDKLASVAGTLTILGKSQPATLKAMRFNCYENAQLKREVCGGDFESSIQ
                     RSQFGLGFLPNVTPDNIRLLIQVEAIRQ"
     gene            complement(1190..2041)
                     /locus_tag="VF308_13630"
     CDS             complement(1190..2041)
                     /locus_tag="VF308_13630"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7437743.1"
                     /translation="MKIAFFGTGLMGSGFVRRLRANGHEVNVWNRSAAKARALEADGA
                     IAFGDPAAALAGTERIHLSLSDDAAVDSVLEPLALSIPTTAWIVDHTTTAVTPTAERI
                     ARWESRGRTFVHAPVFMGPVNALEGTGLMLVSGQKSRHDALLPDLEKMTGNVVYLGEA
                     PERAAAFKLFGNLTLLGIMGVLGDVNRLAHAVGIPTAEAFSLFKHFNPGQSLPARAAR
                     IESGEFTKPSFEVAMARKDVRLMIEEAGRGGVELFVMPGVAAMFDAAIARGESALDAT
                     AAARAPA"
     gene            complement(2119..>2587)
                     /locus_tag="VF308_13635"
     CDS             complement(2119..>2587)
                     /locus_tag="VF308_13635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011462848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7437744.1"
                     /translation="QHAYEAMECIGGSGVMEDGPMPRLFRESPVNAIWEGSGNVQCLD
                     VLRAMRKTPEVVDAFFAEVARARGANARFDRWLDALRRDLADHGEAEYRARDLVDRMA
                     LALQAALLLQHAPHGVGDAYCASRLTDGGQRHYGTLPRGVDCAALIERATPRA"
BASE COUNT          406 a          912 c          884 g          385 t
ORIGIN      
        1 atcacgtttc aggtcaagca aagcggcgtg ccaatcgacg gccgttttcg caagttcgat
       61 gcccaggtcg cgctcgatcc gaaggcgcct cagaccggta cggtcgccat cacggtcgac
      121 accggcagcg ccacggtcgg cttcgccgag agcgacgccg agctgccgcg cgcgccctgg
      181 ttcgacagca ccaggttccc gcgcgccgtc ttccggtcga gcgcgatcaa ggggctcggc
      241 ggcggccgct ttcaggccgc cggcaagctc gacctcaagg gaaccccgca cgacctcgcc
      301 gtgccggtga cgatcgtcca gagcggcacg caatcgaccg cgagcggcga gttcgtcgtc
      361 aagcggctcg acttcaggat cggcgagaac gagtgggccg atctgtcgtt ggtcgccaac
      421 gacgttcgcg tccgcttcaa gctggtgttc acgggcctcg gccctcttta gtcaagatca
      481 cgaacaggag acttcatgcg caagaccttc atcgccgccg cgttcgcggc cgccgctgcc
      541 ggcgtcgccg ccgagcccgt cactttcgcc atcgatccgg ggcacaccgt cgtcacgttt
      601 gaggcgcttc acgtcaacac gtcgacgcag cgaggccgga tccaggccaa ggaaggcagc
      661 gtggtcctgg accgcgcggc caagacgggc aaggccgaca tcgtcatcga cctcaccacc
      721 ctgagcgccg cgtcgtcggc gctggagggc acgttgaagg gggagcgcct gttcaacgtc
      781 gcacagggcc cgaccgcgcg cttcgtcggc gacaccttca cgttcgacgg cgacaagctc
      841 gcctccgtcg cgggcacgct gacgatcctc ggcaagtcgc agccggcaac gctcaaggcg
      901 atgcgcttca actgctacga gaacgcgcag ctcaagcgcg aggtgtgcgg cggcgatttc
      961 gagtcttcta tccagcgcag ccagttcggc ctcggcttcc tgccgaacgt gacgcccgac
     1021 aacatcaggc tgttgatcca ggtcgaggcg atccggcagt agcgtcgagg cggtgaagtg
     1081 tcagtcttcg ggccggcccg aaggcgatga tcggcgccgc aagcactgca cccggcccac
     1141 cggcaccgac gagcccgacg ggtgcgacgc gggcaacggc caggctgcgt caggcgggcg
     1201 cgcgcgccgc cgccgtcgcg tcgagcgcgc tttcgccgcg cgcgatcgcg gcatcgaaca
     1261 tcgccgccac gccgggcatg acgaagagct cgacgccgcc gcgcccggcc tcctcgatca
     1321 tcagccggac gtccttgcgc gccatcgcca cttcgaacga gggcttcgtg aactcgccgg
     1381 actcgatccg cgctgcccgc gccggcagcg actggcccgg gttgaagtgc ttgaacagcg
     1441 agaacgcctc cgcggtcggg atgccgaccg cgtgcgccag gcggttgacg tcgccgagca
     1501 cgcccatgat gccgagcagc gtcaggttgc cgaacagctt gaatgccgcc gcccgctcgg
     1561 gagcctcgcc gaggtagacg acgttgccgg tcatcttctc caggtccggc agcagcgcgt
     1621 cgtggcgcga cttttgtccc gacacgagca tcaggccggt cccctcgagc gcgttcaccg
     1681 gacccatgaa gaccggcgcg tggacgaagg tccggccgcg cgactcccag cgggcgatgc
     1741 gctcggcggt gggcgtgact gcggtggtcg tgtggtcgac gatccaggcg gtggtcggga
     1801 tcgacaaggc gagcggctcg aggaccgagt cgaccgcggc atcgtcggac agcgacaggt
     1861 ggatccgctc ggtcccggcg agcgccgccg ccgggtcgcc aaatgcaatc gcgccgtcgg
     1921 cctcgagcgc gcgcgccttg gcggcgctgc ggttccagac gttgacctcg tgaccattgg
     1981 cgcgcaggcg gcggacgaag cccgatccca tcaggccggt tccgaaaaag gcgatcttca
     2041 tgggagaagt cctcgttggc gattcgccac cataccgcgt ctacgaccga gggcagggcg
     2101 ctcgcaagag cgctcgccct atgcgcgtgg tgtcgctcgt tcgatgagcg cggcgcaatc
     2161 gacgccgcgc ggcagcgtgc cgtagtggcg ctgaccgccg tcggtcaggc gcgaggcgca
     2221 gtaggcgtcg ccgacgccgt gcggcgcgtg ctgcagcagc agcgccgcct gcagcgcgag
     2281 cgccatgcga tcgacgaggt cgcgcgcccg gtactcggcc tcgccatgat cggcgaggtc
     2341 gcgccgcagg gcgtcgagcc agcggtcgaa gcgcgcgttc gcgcccctgg cgcgcgcgac
     2401 ctcggcgaag aacgcgtcga cgacttccgg ggtctttcgc atcgcccgca gcacgtccag
     2461 gcattgcacg ttgccgctgc cttcccagat ggcattgacc ggcgattcgc ggaacaggcg
     2521 cggcatcggc ccgtcctcca tcacaccgct gccaccgatg cactccatgg cttcgtaggc
     2581 gtgttgc
//
LOCUS       DASVHM010000744         2178 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_558309, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000744 DASVHM010000000
VERSION     DASVHM010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_558309"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VF308_13640"
     CDS             complement(<1..218)
                     /locus_tag="VF308_13640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase family protein"
                     /protein_id="HEX7437745.1"
                     /translation="MNVPRPAPLSSLPAAAARAVRGVLTDVDDTLTHAGAIEPEALVA
                     LAALRAAGVAVIAVTGRPMGWSAGYART"
     regulatory      281..354
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01057"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="S-adenosyl-L-homocysteine riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="S-adenosyl-L-homocysteine"
                     /db_xref="RFAM:RF01057"
     gene            427..1887
                     /gene="ahcY"
                     /locus_tag="VF308_13645"
     CDS             427..1887
                     /gene="ahcY"
                     /locus_tag="VF308_13645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012207716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEX7437746.1"
                     /translation="MNAVLKPSPSSPGSADHAVADPSLAAWGRKEIRIAETEMPGLMA
                     IREEFAKTQPLKGARIAGSLHMTIQTAVLVETLQALGAQVRWASCNIFSTQDHAAAAL
                     AANGAHGVGTPVFAYKGETLTDYWDYTHRIFEFGAKDSRGEGPNMILDDGGDATLLMH
                     LGQRAEKDASVLANPGSEEETCLFAAIKARLAADPTWYSRKSAEIIGVTEETTTGVHR
                     LKEMSAKGTLLFRAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKVAVVAGY
                     GDVGKGSSQALRALSAQVWVTEIDPINALQAAMEGYKVVTMDYAADKGDIFVTTTGNK
                     RVITHDHMAKMKDQAIVCNIGHFDNEIDIASIEKYEWDEIKPKVDHIRFPDGKQIILL
                     AKGRLVNLGCGTGHPSFVMSSSFANQTIAQIELYTQPAKYQAGQVYVLPKHLDEKVAR
                     LHLKKVGAMLTELTDEQAAYIGVSKAGPYKPDTYRY"
     gene            1901..>2178
                     /locus_tag="VF308_13650"
     CDS             1901..>2178
                     /locus_tag="VF308_13650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009516670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein"
                     /protein_id="HEX7437747.1"
                     /translation="MRADQLIVSRGLAPTRSAAQRLIDHHGVRWLAPGGWAVPRKAGE
                     DLPADCGLEVVDDAEVRFVSRGGLKLDSALAHCGIDVRGAVCLDIGQST"
BASE COUNT          406 a          746 c          716 g          310 t
ORIGIN      
        1 caggtgcgcg cgtagcccgc gctccaaccc atcgggcggc cggtgaccgc aatcaccgcc
       61 acgccggcgg cgcgcaaagc cgcgagcgcg acgagcgctt ccggctcgat cgcgccggcg
      121 tgtgtcagcg tgtcgtcgac atcggtgagc acgccgcgca cggcgcgtgc ggccgcggca
      181 ggaagactgg acagcggggc cgggcgcggc acgttcatcg cgaaagtctt gcacaagccg
      241 ggccgtgcaa gggccggtgg aggtcgctac aattcgaacc agtttcgagg agcgttgcaa
      301 ggccgcctcc ggtcccaggc tcgaaactct gcattgcaac cgcgctcacc cgcacgaagc
      361 ccgtgggtga gtccaacttc caccggcgcg tttcctgcgg gtcctttgtg accttcggag
      421 cccgagatga acgccgttct caaaccttcc ccgtcttccc ccggcagcgc cgaccatgct
      481 gtcgccgacc cttcgctcgc cgcctggggg cgcaaggaaa tccgcatcgc cgagaccgag
      541 atgcccggcc tgatggcgat ccgcgaagag ttcgcgaaga cgcagccgct caagggcgcg
      601 cgcatcgccg gctcgctgca catgacgatc cagaccgccg tgctggtcga gacgctacag
      661 gccctcggcg cgcaggtgcg ctgggcctcg tgcaacatct tctcgaccca ggatcatgcg
      721 gccgccgcgc tggccgccaa cggagctcac ggcgtgggca cgccggtctt tgcctacaag
      781 ggcgaaaccc tcaccgacta ctgggactac acccaccgca tcttcgaatt cggcgcgaag
      841 gactcgcgcg gcgaaggccc gaacatgatc ctcgacgacg gcggcgacgc gacgctgctg
      901 atgcacctcg gccagcgcgc cgagaaggat gcgtcggtgc tcgccaaccc cggcagcgag
      961 gaggaaacct gtctcttcgc ggcgatcaag gccaggctcg cggccgaccc gacctggtac
     1021 agccgcaaga gcgccgagat catcggcgtg accgaggaaa cgacgaccgg cgtgcaccgc
     1081 ctgaaggaaa tgagcgcgaa gggcaccttg ctgtttcgcg cgatcaacgt caacgactcg
     1141 gtgacgaaaa gcaagttcga caacctctac ggctgccgcg aatcgctggt cgacggcatc
     1201 aagcgtgcga ccgacgtgat gatcgccggc aaggttgccg tcgtcgccgg ttacggcgac
     1261 gtcggcaagg gctcgtcgca ggcgctgcgg gccctctcgg cgcaggtctg ggtgaccgag
     1321 atcgacccga tcaacgcgct ccaggcggcg atggaaggct acaaggtcgt gacgatggac
     1381 tacgccgcgg acaagggcga catcttcgtc accacgaccg gcaacaagcg cgtgatcacg
     1441 cacgaccaca tggcgaagat gaaggatcag gcgatcgtct gcaacatcgg gcacttcgac
     1501 aacgagatcg acatcgcgtc gatcgagaag tacgagtggg acgagatcaa gccgaaggtc
     1561 gaccacatca ggtttccgga cggcaagcag atcatcctgc tcgccaaggg ccgcctcgtg
     1621 aacctcggct gcggcaccgg gcatccgagc ttcgtgatgt cgtcgagctt cgcgaaccag
     1681 acgatcgcgc agatcgagct ctacacccag cccgcaaagt accaggccgg ccaggtctac
     1741 gtgttgccga agcacctcga cgagaaggtc gcgcggctgc acctgaagaa ggtcggcgcg
     1801 atgctgaccg agctgaccga cgagcaggcg gcgtacatcg gcgtctccaa ggccggcccc
     1861 tacaagcccg acacctaccg ttactaatca gtgcccagcg atgcgggccg atcagctgat
     1921 cgtctctcgc ggactggcgc cgacgcgttc ggccgcgcag cgcctgatcg accaccacgg
     1981 cgtgcgctgg ctcgcgccgg gcggctgggc cgtgccgcgc aaggccggtg aagacctgcc
     2041 cgcggattgc ggcctcgagg tcgtcgacga cgccgaagtg cgcttcgtct cgcgcggcgg
     2101 gctcaagctc gacagcgcgc tcgcgcactg cggcatcgat gtgcgcggcg cggtctgcct
     2161 cgacatcggc cagagcac
//
LOCUS       DASVHM010000745         5425 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_415411, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000745 DASVHM010000000
VERSION     DASVHM010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5425
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415411"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..680
                     /locus_tag="VF308_13655"
     CDS             <1..680
                     /locus_tag="VF308_13655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008645281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437748.1"
                     /translation="KLFPGVMQQVYGMTEESGVVSVLGPQDHADPAVAHRLVSAGKAI
                     AGVEIEIRDPATGAPVATGERGEIWVRSDQVMGGYWGKPEATAATITPDGWLRSGDGG
                     YMDADGYLYITDRIKDMIISGGENIYPAEIERVLAEHPQVQDVAVIGVPDERWGEVPK
                     AVVVAAPGATVDAEQLLAWCRERLASFKCPKSVDVVADLPRNPTGKILKKDLRKPYWE
                     GRERQVV"
     gene            complement(691..1701)
                     /locus_tag="VF308_13660"
     CDS             complement(691..1701)
                     /locus_tag="VF308_13660"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX7437749.1"
                     /translation="MIDLSTLGMTEIVRLQNQLQQELRRRFERSLLMAFSDIVGSTPY
                     FARFGDAVGRQLHQLHFDLLGQAATDAQGRIVDAVGDGVFCVFPGAESGVRGIVAFQQ
                     AMARENAARAREHQLAVRIGLHWGSVLTDGTLVTGDSVHVAARVARAAEPGGVCLTRQ
                     VFLEFGPELRLLCHPIGTRELKGVTQPFDLLELDWRDPAAFPRRVLIEETEQQIALPQ
                     QDIVSFGRLHEPEGARANDIVLFHPDPVRARQISRWHFELRRAPDGLRLRTLSDGLTT
                     IDGQPVGKGVDVPVRSGTRIGVANILTLRLAGPAHAAADDEDSRTMIFDPDARADRPA
                     SS"
     gene            complement(1994..3238)
                     /locus_tag="VF308_13665"
     CDS             complement(1994..3238)
                     /locus_tag="VF308_13665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006497984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase NADP-binding
                     domain-containing protein"
                     /protein_id="HEX7437750.1"
                     /translation="MSTSSLDVIAFGATSFVGKILCRYLLEEFGTQGELKWAVAGRSK
                     AKLEELRDSLGVKPGALRLVVADAADDGALRKLCASTRVVVSTVGPYALHGEPLVRAC
                     AESGTDYCDLTGEVQWIRRMVQRYEATARKSGARIVHCCGFDSIPSDMGVYFLQREAR
                     NRFGAPCTRVKMRVKAMRGGFSGGTVASLMNVFKEAAGDKALRQELADPYSLCPPGGA
                     PKVRQPEVRSAEFDADFDAWVAPFVMSAINTRVVHRTNALSERAYGADFVYDEAMLMG
                     RGLNGRLAATATAAGLAGFMLAGAIGPLRAALERFALPKPGEGPSPEAQRKGSFDLRF
                     LGTTVDGRQIRTKVTGDRDPGYGSTSKMLGQAAACLALDVDKAATPGGFWTPATIFGD
                     RLIERLEAHSGLTFESVSGMRH"
     gene            complement(3379..3615)
                     /locus_tag="VF308_13670"
     CDS             complement(3379..3615)
                     /locus_tag="VF308_13670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437751.1"
                     /translation="MKIYDIEVQRLRSSKHDRGMIELGIDVSVLPLPVRDDQPLTSCL
                     RLPVEHARSLLVLLKQQLVEVDKLQPRSRRSGRS"
     gene            3731..4708
                     /locus_tag="VF308_13675"
     CDS             3731..4708
                     /locus_tag="VF308_13675"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003953 - NAD+ nucleosidase activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HEX7437752.1"
                     /translation="MGPTQIFISYRRDDAAGYARAVNDELTRCFGAERVFIDVDDINA
                     GQPFSEVIQRSVGDSAVLLALIGRRWLGEREGAPPRVFEAGDFVRQEVAAGLAKGLRV
                     IPVLLDGAAMPDPAQLPPELRPLAGRNALALDNTRFAADMAHLVREVRGALGEEALPP
                     PARGGFTKWWLAGAVLALAAIAALWQLRSSPDERAMAPAARPAARPQVNGEWRAEVDY
                     DWPNAHYVERFVFSGEGDELNGSASFLGVARGVLESRIDAEGVSFVTRTSELAGAGGS
                     DPAVVHRYRGRLSGAEIRFVMQTEGGSSAHVPVEFVARRVASAAPQASR"
     gene            complement(4740..>5425)
                     /locus_tag="VF308_13680"
     CDS             complement(4740..>5425)
                     /locus_tag="VF308_13680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007833842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="succinylglutamate desuccinylase/aspartoacylase
                     family protein"
                     /protein_id="HEX7437753.1"
                     /translation="FDPAKPFDSRQITHNFNRIWSAAWLDGSEDSVELRRAREMRSAV
                     AAADHILDIHSTSQDVVPFWVYPSFERNAAVARSLARPEVHLVMPAGLGSGTPLVRYD
                     GHGRADGTGAALVVECGQHFRQATAEVATEVATNFLAHFGLVDKPAPRPAAPARRFEL
                     LRTHVIQHESFAFVRPVVGFETFAEGELIATDGSLEIRAPCDDCTIFMPARIVIVGRE
                     GVYLTKPMQ"
BASE COUNT          820 a         1884 c         1919 g          802 t
ORIGIN      
        1 tgaagctctt tccgggtgtc atgcagcagg tctatggcat gaccgaggag agcggcgtcg
       61 tgagcgtcct cggcccccag gaccacgccg atcctgccgt ggcgcaccgg ctcgtctcgg
      121 cgggcaaggc gatcgccggc gtcgagatcg agatccgcga ccccgccacc ggtgcgcccg
      181 tggccaccgg cgagcgtggc gaaatctggg tgcggagcga ccaggtcatg ggcggctact
      241 ggggcaagcc ggaggccacc gccgcgacga tcacgccgga cgggtggctg cgctccggag
      301 acggcgggta catggatgcc gacggctacc tctacatcac cgaccgcatc aaggacatga
      361 tcatcagcgg cggcgagaac atctacccgg ccgagatcga gcgcgtgctg gccgagcacc
      421 cgcaggtcca ggacgtcgcg gtgatcggcg tgccggacga gcgctggggc gaagtgccca
      481 aggcggtcgt cgtcgccgca cccggcgcga cggtcgacgc cgagcagctg cttgcatggt
      541 gccgcgaacg cctggcgtcg ttcaagtgcc ccaagagcgt cgacgtcgtc gccgatctgc
      601 cacgcaatcc caccggcaag atcctcaaga aagacctgcg caagccgtac tgggaggggc
      661 gcgagcgtca ggtcgtctag ggtcgaacgg tcaggaactc gccggtcggt cagcgcgcgc
      721 gtcgggatcg aagatcatcg ttcggctgtc ctcgtcgtcc gccgccgcat gcgccggacc
      781 ggccagtcgc agggtcagga tgttggcgac gccgatccgc gtgccgctgc gcaccgggac
      841 gtcgacgccc ttgccgaccg gctggccgtc gatggtggtc aggccgtccg acagcgtgcg
      901 cagccgaagg ccgtcaggcg cgcgccgcag ctcgaagtgc cagcggctga tctgccgcgc
      961 gcgaaccggg tccggatgga acagcacgat gtcgttggcg cgggcgccct cgggctcgtg
     1021 caggcggccg aagctcacga tgtcctgctg cggcagcgcg atctgctgct cggtctcctc
     1081 gatcagcaca cggcgaggga acgcggccgg gtcgcgccag tcgagttcga ggaggtcgaa
     1141 cggctgcgtc acgcccttca gctcgcgcgt gccgatcggg tggcaaagca gccgcagctc
     1201 cggcccgaac tcgaggaaca cctggcgcgt gaggcagacc ccgcccggct cggcggcgcg
     1261 cgcgaccctc gcggcgacgt ggaccgagtc gccggtcacc aacgtcccgt cggtcaggac
     1321 cgacccccag tgcaggccga tgcggactgc cagctggtgc tcgcgcgccc gagccgcgtt
     1381 ctcgcgcgcc atcgcctgct ggaacgcgac gatgccgcgc actcccgact cggcgccggg
     1441 aaagacgcag aacacgccgt cgccgacggc gtcgacgata cgtccctgcg catccgtggc
     1501 ggcctgcccg agcaggtcga aatgcagctg gtgcagctgg cggccgaccg cgtcgccgaa
     1561 gcgcgcgaag tacggcgtcg agccgacgat gtccgagaac gccatcagca gcgatcgctc
     1621 gaagcggcgc ctcagctctt gctgcagctg gttctgcaga cggacgatct ccgtcatgcc
     1681 gagggtgctg agatcgatca tcggaggggt ctacccggac gggcccgatt gtgaaggttt
     1741 cagccggtcg cggcgcgcct ctactgcgcc tcgatgcccg ctttcttgac gatctgcgcg
     1801 tacttcgcga gctcgttgcg gaagaacgtc atcgccttgt cggccggtcc cacattgatc
     1861 acgctgccct gccgggccat cgccagagga tgcggcccgg caggtcgagc gtctccatgg
     1921 gaatcctttc gacgcgcgtg cacgtcgcct cacgcgccat gttgaacccg ggtcgggtgc
     1981 agcgcgagcc tgctcaatgt cgcatgcccg acaccgattc gaaggtcagc ccggagtggg
     2041 cctccagccg ctcgatcagg cggtcgccga agatcgtggc gggggtccag aagccgcccg
     2101 gcgtcgcggc cttgtcgacg tcgagcgcga ggcatgcggc ggcctggccg agcatcttgc
     2161 tggtcgagcc atagcctggg tcgcggtcgc cggtgacctt ggtgcgaatc tggcgcccgt
     2221 ccaccgtcgt gccgaggaag cggaggtcga acgagccctt gcgctgcgcc tccgggctcg
     2281 ggccctcgcc gggtttgggc agcgcgaaac gctcgagtgc cgcgcgcagc gggccgatcg
     2341 cgcccgcgag catgaagccg gcaaggcccg cggccgtggc ggtggcagcg agccggccat
     2401 tgagtccccg gcccatgagc atggcctcgt cgtagacgaa gtcggcgcca taggcccgtt
     2461 ccgacagcgc gttcgtgcga tggacgacgc gcgtgttgat ggcgctcatc acgaacggtg
     2521 cgacccaggc gtcgaagtcg gcatcgaact ctgccgatct gacctcgggc tgccgcacct
     2581 tcggcgcacc cccgggcggg cacagcgaat acgggtcggc gagctcctgg cgcagcgcct
     2641 tgtccccggc ggcctccttg aagacgttca tcaggctggc gacggtgccg ccggagaagc
     2701 cgccgcgcat cgccttgacg cgcatcttga ctcgcgtgca cggcgcgccg aatcgattcc
     2761 tcgcctcgcg ctgaaggaag tacacgccca tgtcggaggg gatggagtcg aagccgcagc
     2821 aatggacgat gcgcgcaccg gacttgcggg ccgtcgcctc gtagcgttgc accatgcggc
     2881 gtatccactg cacctcgccg gtcaggtcgc agtagtcggt gccggattcg gcgcaggccc
     2941 tgaccagcgg ctcgccatgg agcgcgtacg gtccgaccgt cgagaccacg acgcgtgtcg
     3001 acgcgcagag cttgcgcaac gcgccgtcgt cagcggcgtc ggcgacgacg agccgcagcg
     3061 cgccgggctt gacgcccagc gaatcgcgca gctcctcgag cttcgccttc gagcgcccgg
     3121 ccaccgccca cttcaactcc ccctgcgtgc cgaactcctc cagcaggtag cggcaaagga
     3181 tcttgccgac gaagctcgtg gcgccgaacg cgatgacgtc gagagaggat gtgctcatgg
     3241 cgagcccatt ctgcttcagt cagccggacg catcggcagg tcgtcgagcg gtcggtcgga
     3301 ggcgcgccgg atggcgacgc aaccgagcgg cagcaccggg ccggcagagg acgcgttcat
     3361 cgcgccccct gcagcgcgtc agcttcgccc ggaacgtcga ctgcgcggtt gcaacttgtc
     3421 gacctcgacc agctgctgct tgagcagcac gagcaaggac cgggcgtgct ccacgggcaa
     3481 gcgaaggcaa ctggtgagcg gctggtcatc ccgcaccggc agaggcagaa ccgacacgtc
     3541 gatgccgagc tcgatcatgc ccctgtcgtg cttgctcgac ctcaggcgct gcacttcgat
     3601 gtcgtagatc ttcacgcgcg ttcttccgcg atggggcgac gccggattgt ctcgcctcgc
     3661 gcgtcgcgcg aggtcggtct ccttcgccgc cgtttgggta tcctgccggt gcgccgcagg
     3721 cgcgagcgcc atgggaccga ctcagatctt catcagctac cgccgcgacg acgctgccgg
     3781 atacgcgcgc gccgtcaacg acgagctgac ccgttgtttc ggtgccgagc gtgtgttcat
     3841 cgacgtcgac gacatcaacg ccgggcagcc cttcagcgag gtcatccaac gctcggtcgg
     3901 cgactcggcg gtgttgctgg cgctgatcgg caggcgctgg ctcggcgagc gcgagggcgc
     3961 cccgccgcgt gtcttcgaag ccggcgactt cgtcaggcag gaagtcgccg ccgggctggc
     4021 caagggcctt cgcgtcatcc cggtcctgct ggacggtgcg gccatgcccg accctgcgca
     4081 gctgccgccg gagctgcgcc ccttggccgg gcgcaacgcc ttggcgctcg acaacacgcg
     4141 cttcgctgcc gacatggccc acctggtgcg cgaggtgcgc ggtgcactcg gtgaagaggc
     4201 actcccgcca ccggcccgag gggggttcac gaagtggtgg ctggccggcg ccgtgttggc
     4261 cctggcggcg atcgccgcgc tctggcagtt gcgatcctcg cccgacgaac gagccatggc
     4321 accggcggca cgcccggcgg cgcgcccgca agtcaacggc gaatggcgcg cggaagtcga
     4381 ctacgactgg cccaacgcgc actacgtcga acgattcgtc ttctcgggcg agggcgacga
     4441 gctgaacgga agcgcctcgt tcctcggcgt cgcgcgcggc gtgctcgaga gccgcatcga
     4501 cgccgagggt gtgagcttcg tcacccggac gagcgaactg gcgggggccg gcggcagcga
     4561 cccggcggtc gtgcaccgct accgcggccg cctgtccggc gccgagattc gattcgtcat
     4621 gcagaccgaa gggggcagct cggcccacgt gccggtcgag ttcgtcgccc gccgggtggc
     4681 gtcggccgcg ccgcaggcca gccgctgaga cgaacccccc gcggcgtgag caccggcgat
     4741 cactgcatcg gcttcgtcag gtagacgcct tcgcgtccga cgatgacgat gcgcgccggc
     4801 atgaagatcg tgcagtcgtc gcacggcgcg cgaatctcca gcgaaccgtc ggtggcgatg
     4861 agctcgcctt cggcgaaggt ctcgaagccg accaccggtc gcacgaaggc gaagctctcg
     4921 tgctggatca cgtgcgtgcg cagcagctcg aagcggcgcg ccggcgcggc cggccgcggc
     4981 gcgggcttgt cgacgaggcc gaagtgggcg aggaagttcg tcgcgacctc ggtggcgacc
     5041 tcggcggtcg cctgcctgaa atgctggccg cattcgacga cgagggcggc gcccgtgccg
     5101 tcggcccgcc cgtgcccgtc gtaccggacg agcggcgttc ccgacccgag ccccgccggc
     5161 atgaccaagt ggacctccgg ccgcgccagc gatcgcgcca cggcggcatt gcgctcgaac
     5221 gacggataga cccagaacgg caccacgtcc tggctcgtcg aatggatgtc gaggatgtgg
     5281 tcggccgccg ccacggcaga ccgcatctcg cgcgcgcggc gcagctcgac gctgtcttcg
     5341 ctgccgtcga gccaggccgc cgaccagatg cggttgaagt tgtgcgtgat ctggcggctg
     5401 tcgaacggct tggccggatc gaagg
//
LOCUS       DASVHM010000746         8965 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_994443, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000746 DASVHM010000000
VERSION     DASVHM010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 8965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8965
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_994443"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..153)
                     /locus_tag="VF308_13685"
     CDS             complement(<1..153)
                     /locus_tag="VF308_13685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013539461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEX7437754.1"
                     /translation="MSTTFGAPTPWQRLKPVFTGFDGPLGFAVLLLAVAGLVTMYSAG
                     FDHGSRF"
     gene            complement(150..2153)
                     /gene="mrdA"
                     /locus_tag="VF308_13690"
     CDS             complement(150..2153)
                     /gene="mrdA"
                     /locus_tag="VF308_13690"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013899685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEX7437755.1"
                     /translation="MTELKNTERELSRFRIRLAAAAGFVLFAFGLLGARLAYLQIYKH
                     EELSTQAENNRIAVVPVVPNRGLILDRNGVVLATNYSAYTLEITPSKVADLEATIDRV
                     GEVVEVQPRDRKRFRRLMEESKSFESLPIRTRLTDDEVARFTAQRFRFEGVDIKARLF
                     RSYPLGEVGSHLIGYIGRINQAEKETIDDSDDAANYRGTEYIGKLGVEQSYESELHGA
                     TGFEEVEMSAGGHAVRRLKSNPATPGNAIVMSIDIRLQAMVEELFGDRRGALVAIDPR
                     NGEVLAFVSKPNFDPNLFVDGIDVENWKALNESPDKPLLNRALRGSYPPGSTYKPFMA
                     LAALTLGKRTPQQTIFDPGYFWFGNHKFRDDKEGGHGSVDMYKSIVQSCDTYYYMLAG
                     DLGVDAIHDFMAPLGLGQLTGIDMQGELRGTLPSTEWKRKAYRQKDQQKWYAGETISL
                     GIGQGYNAFPMLQLAQATATVAAAGHRHTPHLVKAVENYESRVPRRLVGDELPPLPWK
                     AEHVAFIHQALYGVTQEGTSARSFVNAPYKSAGKTGTAQVVEIKANEKYNASRVEERH
                     RDHALYTAFAPLEEPRIALAMVVENAGFGAGAAAPIARRVFDFVLQGLYPSEADVEAT
                     QAGKSTAPIGTPRPIASVPLPGGTVDGAAAVNAAAPTPIASAR"
     gene            complement(2263..2784)
                     /gene="mreD"
                     /locus_tag="VF308_13695"
     CDS             complement(2263..2784)
                     /gene="mreD"
                     /locus_tag="VF308_13695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HEX7437756.1"
                     /translation="MIMPRSTDQLLMPVNPLFMWFTLLVAFALNVVPVGRVPTMPDFL
                     ALVLVFWNVHQSRRIGVGVAFAFGLLMDVHSGAVLGQHALAYTLLSFFAIAVHRRLLW
                     FTVPSQALQILPLFFAAHAVAMLVRVVAGGMFPGWGVLLAPVFEALLWPVVTMLLLAP
                     QRRAPDPDQNRPL"
     gene            complement(2781..3710)
                     /gene="mreC"
                     /locus_tag="VF308_13700"
     CDS             complement(2781..3710)
                     /gene="mreC"
                     /locus_tag="VF308_13700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEX7437757.1"
                     /translation="MAIGTIDRTPPPFFRQGPSALTKLTFCSALALLLMVADTRFQIT
                     RPLRAAAAAALHPLQRALLVPVDALGDARDYLLGLRVALAREEAARGELARQSERAMR
                     AEQLLQENGRLRALLDLRPSLSVQSQAAQILYEAPDPYSRKVIIDRGSSQGIALASPV
                     INEAGVLGQVTRVYLGSSEVTLLTDKDAAIPVLNSRSGARSAAFGGAAALGGAMELRF
                     MAGNADVQIGDALTTSGVDGVYPPGLPVAKVAAIDRKADSGFARILLAPLAKSDGVRH
                     VLVLEPIGLQLPARPEAPADAASKPASKKGARK"
     gene            complement(3791..4834)
                     /locus_tag="VF308_13705"
     CDS             complement(3791..4834)
                     /locus_tag="VF308_13705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005798130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEX7437758.1"
                     /translation="MFGSFRRYFSTDLAIDLGTANTLIYVRGKGIVLDEPSVVAIRHE
                     GGPHGKKTIQAVGTEAKAMLGKVPGNIEAIRPMKDGVIADFTVTEQMLKQFIKMVHPR
                     SVLRPSPRIIICVPCGSTQVERRAIRESALGAGASDVYLIEEPMAAAIGAGLPVSEAS
                     GSMVVDIGGGTTEVGVISLGGMVYKGSVRVGGDKFDEAIINYIRRNYGMLIGEPTAES
                     IKKNIGSAFPGSEVKEIEVKGRNLSEGVPRSFTISSNEILEALTDPLNQIVSSVKNAL
                     EQTPPELGADIAERGMMLTGGGALLRDLDRLLAEETGLPVLVAEDPLTCVVRGCGMAL
                     ERMERLGSIFTSE"
     gene            5045..5344
                     /gene="gatC"
                     /locus_tag="VF308_13710"
     CDS             5045..5344
                     /gene="gatC"
                     /locus_tag="VF308_13710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019450346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEX7437759.1"
                     /translation="MPLTLQDVRNIAHLARLELGGGEQEAMLAQLNDFFRIVEQMSTV
                     DTTGVEPLYTPLSAVHEVSLRLRDDAVTEVDRRDVNLRNAPSVDAGLFLVPKVIE"
     gene            5359..6828
                     /gene="gatA"
                     /locus_tag="VF308_13715"
     CDS             5359..6828
                     /gene="gatA"
                     /locus_tag="VF308_13715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEX7437760.1"
                     /translation="MGVAEMARALDAGKVSSVDLAKHLLARFAAHHDLGTLLASDEAS
                     ALRQAEAADRRRSGGEKGPLLGVPLAHKDIFVTQGLPSTAGSKMLAGYRSPFDATVLE
                     RLGAAGAVTLGKLNCDEFAMGSSNENSAFGAVKNPWDPSRVPGGSSGGSAAAVAARLL
                     PAATGTDTGGSIRQPASFTGITGIKPTYGVCSRYGMVAFASSLDQAGPLARSAEDCAL
                     LLGAMSGFDPLDSTSAERPPQDFHAQMLAPRANASATEPLKGLRIGLPKEFFPAALRQ
                     DVERAVRGALAECERLGATLVDVSLPRTELSIPVYYIIAPAEASSNLSRFDGVRYGHR
                     AAHYGDLLDMYKKSRSEGFGAEVKRRIMIGTYVLSHGYYDAYYLQAQKLRRMIADDFQ
                     ACFRECDLIAGPVAPSVAWKLGAQSEDPVANYLADIFTLPASLAGLPGMSVPAGFGEG
                     AMPVGLQLIGDYFQEGTLLHAAHALQQATDWHSRTPPGY"
     gene            6833..8278
                     /gene="gatB"
                     /locus_tag="VF308_13720"
     CDS             6833..8278
                     /gene="gatB"
                     /locus_tag="VF308_13720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEX7437761.1"
                     /translation="MNTPALTRGYEVVIGIETHAQLSTRSKIFSGSSTAFGAAPNTQA
                     SAVDLALPGTLPVLNRGAVERAIRFGLAVEGSVAPHSIFARKNYFYPDLPKGYQISQY
                     ETPVVQGGRVSFLVAGVPHTVNLTRAHLEEDAGKSLHEDYQGQSGIDLNRAGTPLLEI
                     VTEPDMRSSEEAVAYAKQLHAIVTWNDLCDGNMQEGSFRCDANVSVRKPGAPYGTRRE
                     IKNLNSFKFMQQAIDYEIEWQIDLLEDGGSVHQATVLFDPDSGSTRAMRSKEDAADYR
                     YFPDPDLPPLVIAKEWIDRVRNAMPEQPDVKMQRYQDKFGLSAYDAALMTQSRAMSSF
                     FEATESACRRPKLAANWLTGEVSRRLNAEGRSIEDCPVRPETLGALITRIVDQIISNS
                     AAKQVLDALWNDPGKRLDDVIIEQGHEQMSATELGRIVDEVLAANPKSVEEYRAGKEK
                     AFNALVGQAMKATRGKANPEQVNALLKNKLG"
     gene            complement(8286..8963)
                     /locus_tag="VF308_13725"
     CDS             complement(8286..8963)
                     /locus_tag="VF308_13725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437762.1"
                     /translation="MAASPIAWAQNAAPAGKTIYTCTDARGKRLTSDRLIPECSDREQ
                     RELNSDGSLKRIIPPTLTADERGEAEAREREAAAARVARQDATRRDRNLMARFSNEAA
                     HRKAREAALDDVRNSVRTSEARVKLLMAERKPLLDEAEFYVGKDLPAKLKDQLDANDA
                     ALAAQRSLIQNQETEVVRINGLYDLELARLKKLWAGGPAGSLGPAGSASGPPPAAQGY
                     APKAAAR"
BASE COUNT         1444 a         3040 c         3089 g         1392 t
ORIGIN      
        1 gaagcggctg ccgtggtcga agccggccga gtacatcgtg acgaggccgg ccaccgccag
       61 cagcagcacc gcgaagccga gcggcccgtc gaagccggtg aacaccggct tcaggcgttg
      121 ccaaggcgtc ggcgctccaa aggtggtgct catcgggcgc tcgcgatcgg cgtcggcgcc
      181 gcggcgttga cggcggcggc gccgtcgacc gtcccgcccg gcagcggcac cgatgcgatc
      241 ggacgcggcg tgccgatcgg ggcggtcgac ttgccggcct gcgtcgcctc cacgtcggct
      301 tcgctcgggt acaggccctg cagcacgaaa tcgaagacgc ggcgcgcgat cggggccgcg
      361 gccccggcgc cgaagcccgc gttctcgacc accatcgcca gcgcgatgcg cggctcctcg
      421 agcggggcga aggcggtgta gagggcgtgg tcgcgatgac gctcctcgac ccggctcgcg
      481 ttgtactttt cgttggcctt gatttcgacc acctgcgccg tgccggtctt gccggccgac
      541 ttgtacggcg cgttgacgaa cgagcgcgcc gacgtgccct cctgcgtcac gccgtagagc
      601 gcctggtgga tgaaggcgac gtgctcggcc ttccagggca gcggcggcag ctcgtcgccg
      661 acgaggcgac gcggtaccct gctttcgtag ttttcgaccg ccttgacgag gtgcggcgtg
      721 tggcggtggc cggcggccgc gacggtcgcg gtggcctgcg cgagctgcag catcggaaag
      781 gcgttgtagc cctggccgat gccgagcgag atggtctcgc cggcatacca tttctgctgg
      841 tccttctgcc ggtaggcctt gcgcttccat tcggtcgaag gcagggtgcc gcgcagctcg
      901 ccctgcatgt cgatgccggt cagctgaccc aggccgagcg gcgccatgaa atcgtggatg
      961 gcgtcgacgc cgaggtcgcc ggcgagcatg tagtagtagg tgtcgcacga ctggacgatc
     1021 gacttgtaca tgtcgaccga gccgtgcccg ccctccttgt cgtcgcggaa cttgtggttg
     1081 ccgaaccaga agtagcccgg gtcgaagata gtctgctgcg gcgtgcgctt gccgagcgtg
     1141 agcgcggcga gcgccatgaa cggcttgtag gtcgaaccgg gcgggtagct gccacgcagc
     1201 gcccggttga gcagcggctt gtcgggcgat tcgttgagcg ccttccagtt ctcgacgtcg
     1261 atgccgtcga cgaacaggtt cggatcgaaa ttcggcttgc tgacgaaggc gagcacctcg
     1321 ccgttgcgcg gatcgatcgc gacgagggcg ccgcgccggt cgccgaagag ctcctcgacc
     1381 atggcctgca ggcggatgtc gatcgacatc acgatcgcat tgccgggcgt cgccggattg
     1441 ctcttcaggc gccgcacggc atggccgccg gcgctcatct cgacctcctc gaagccggtc
     1501 gcgccgtgca gctccgactc gtagctctgc tcgaccccga gcttgccgat gtactcggtg
     1561 ccgcggtagt tggcggcgtc gtcggaatcg tcgatcgtct ccttttcggc ctggttgatg
     1621 cgtccgatgt agccgatcag gtggctgccg acttcgccca gcggatagct gcgaaagagc
     1681 cgggccttga tgtcgacgcc ctcgaagcga aagcgctgcg cggtgaagcg ggcaacctcg
     1741 tcgtcggtga gccgggtgcg gatcggcagc gattcgaagc tcttgctttc ttccatcagg
     1801 cgccggaagc gcttgcgatc gcgcggctgc acctccacga cttcgccgac gcggtcgatc
     1861 gtcgcctcga gatcggcgac cttcgagggc gtgatttcga gcgtataggc cgaatagttg
     1921 gtggcgagca ccacgccgtt gcggtccagg atcaggccgc ggttaggcac gaccggcacg
     1981 accgcgatgc ggttgttctc ggcctgggtc gagagctcct catgcttgta gatctgcagg
     2041 taggccaggc gcgcgccgag caggccgaag gcgaacagca cgaagcccgc cgccgccgcg
     2101 aggcggatgc gaaagcgcga cagctcgcgc tcggtgttct tcagttcggt caatggaacc
     2161 ccccggtcgc cgagtacggc gcccgacccc ccgagggggt ggggcccggc ttggggcggc
     2221 ccggcgctcg ggtccctcgc gccagtgcag aattgttcca ggtcacaagg gtcgattctg
     2281 atccgggtca ggagcgcggc gctgcggtgc cagcaacaac atcgtcacga ccggccagag
     2341 cagggcctcg aagaccggtg caagcagcac gccccagccg ggaaacatgc cgccggccac
     2401 cacccgcacc agcatcgcca cggcatgcgc cgcgaaaaag agcggcagga tctgcagcgc
     2461 ctgcgagggc accgtgaacc agagcaggcg ccggtgcacg gcgatcgcga agaaactgag
     2521 cagcgtatag gccagggcgt gctggccgag cacggcgccg ctgtgcacgt ccataaggag
     2581 cccgaacgcg aacgccacgc cgacgccgat gcggcgcgac tggtgcacgt tccagaacac
     2641 gagcacgagc gccaggaaat cgggcatcgt aggcacccgg ccgaccggca cgacgttgag
     2701 cgcgaaggcg acgagcaggg tgaaccacat gaagagcgga ttcaccggca tcagcagctg
     2761 gtcggtgctg cgcggcatga tcatttgcgc gcacccttct tcgatgccgg cttcgaggcc
     2821 gcgtcggctg gagcctcggg gcgcgccggc agctgcaggc cgatcggctc gagcacgagc
     2881 acatggcgca cgccatcgga tttcgcgagc ggcgcgagca ggatgcgcgc gaagccggaa
     2941 tcggccttgc gatcgatggc cgccaccttc gcgaccggca gcccgggcgg atagacgccg
     3001 tcgacgcccg aggtcgtcag cgcgtcgccg atctgcacgt cggcgttgcc ggccatgaag
     3061 cgcagctcca tcgccccgcc gagtgccgcg gcgccgccga acgcggcgct gcgcgccccg
     3121 ctcctgctgt tgagcaccgg gatcgccgcg tccttgtcgg tgaggagggt gacctcggac
     3181 gaacccaggt acacgcgcgt cacttggccg agcacgccgg cctcgttgat caccggcgag
     3241 gcgagcgcaa tgccctggct cgatccacgg tcgatgatca ccttgcgcga atacgggtcc
     3301 ggggcttcat agaggatctg cgccgcctgc gactgcacac tcaggctcgg gcgcagatcg
     3361 agcagggcgc gcaggcgtcc gttctcctgg agcagctgct cggcgcgcat cgcgcgctcg
     3421 gactggcgcg cgagctcgcc gcgggcggcc tcctcgcggg caagggcgac gcgcaggccg
     3481 agcaggtagt cgcgcgcatc gccgagcgcg tcgaccggga ccagcagcgc ccgttgcagc
     3541 gggtgcagcg ccgcggccgc cgcggcccgc agcggccggg tgatctggaa acgggtgtcg
     3601 gcgaccatca gcagcagggc cagcgccgag cagaacgtga gcttggtcag cgccgacggg
     3661 ccctggcgga agaagggcgg cggcgtcctg tcgatggtgc ctatggccat ggccgcgccg
     3721 cgcttctacg caattgaagt gaaaaagccg gccacgtgat cagcgtgccg gcttgcgagg
     3781 gctcgggcgt tcactcggac gtgaagatgc tgccgaggcg ctccatgcgc tcgagcgcca
     3841 tgccgcagcc gcgcaccacg caggtgagcg ggtcttcggc gaccagcacc ggcaggccgg
     3901 tctcctcggc gagaagccgg tcgagatcgc gcaacagggc gccgccgcca gtgagcatca
     3961 tgccgcgctc ggcgatgtcg gcgccgagct cgggcggagt ctgctcgagc gcgttcttca
     4021 cgctcgagac gatctggttg agcggatcgg tgagcgcctc gaggatctcg ttgctcgaga
     4081 tcgtgaagct gcgcggcacg ccttcggaaa ggttgcggcc cttgacctcg atctccttga
     4141 cctcggagcc ggggaacgcg ctgccgatgt tcttcttgat cgattcggcg gtcggctcgc
     4201 cgatcagcat gccgtagttg cggcggatgt agttgatgat ggcttcgtcg aacttgtcgc
     4261 cgccgacgcg caccgagccc ttgtagacca tgccgccgag cgagatcacg ccgacctcgg
     4321 tcgtgccgcc gccgatgtcg accaccatcg agccgctcgc ctcgctgacc ggcaaccccg
     4381 cgccgatcgc cgccgccatg ggctcttcga tcaggtagac gtcggaggcg ccggcgccga
     4441 gggccgattc gcggatcgcg cggcgctcca cctgcgtgga cccgcacggt acacaaatga
     4501 tgatgcgcgg gctcggccgc agcaccgagc gcggatggac catcttgatg aactgcttca
     4561 acatctgctc ggtgacggtg aagtcggcga tgacgccgtc cttcatcggc ctgatggcct
     4621 cgatgttgcc gggcaccttg ccgagcattg ccttggcttc ggtgccgacg gcctggatgg
     4681 ttttcttgcc atgggggccg ccttcatggc ggatggcgac gacggagggc tcgtcgagca
     4741 cgatgccttt gccacgcaca tagatcagcg tgttggcggt gcccaggtcg atggcgaggt
     4801 ccgtcgagaa gtagcgacga aaggatccga acatgatggg ggaagcgtcc tgcggcggcg
     4861 gctctcttgc ggccttcagc gcggcggtgc gactttgggt tccggaaaat ggggtctgtg
     4921 tggaacccgg tgcacgcttg aagccagggg ctcgcgcgcg tcacgagggt tggaattaac
     4981 gcgggataat aacctaacac ctgcgcaaat cgacccttcg ccagccccga tccaagccca
     5041 atccatgccc ctcaccctgc aggacgtgcg caacatcgcc cacctcgcgc gcctcgaact
     5101 gggcggtggc gagcaggaag cgatgctcgc gcagctcaat gatttctttc gaatcgtcga
     5161 gcagatgagc accgtcgaca cgaccggtgt cgagccgctg tacacgccgc tttcggctgt
     5221 gcacgaggtc agcctgcgcc tgcgcgacga cgcggtgacg gaggtcgacc ggcgcgacgt
     5281 caacctgcgc aacgccccgt cggtcgacgc cgggctcttt ctcgtgccga aggtgatcga
     5341 gtgagcgcgc cgcacgagat gggtgtggcc gaaatggccc gcgcgctcga tgccgggaag
     5401 gtttcgagcg tcgatctcgc gaaacatctg cttgcacgtt ttgccgcgca tcacgatctc
     5461 ggcacgctgc tcgccagcga cgaagcgagc gccctgcgcc aggccgaggc ggccgaccgg
     5521 cgccgcagcg gcggcgaaaa gggtcccctt ctcggcgtgc cgctcgccca caaggacatc
     5581 ttcgtcaccc agggcctgcc gagcacggcg ggatcgaaga tgctcgccgg ctaccgcagc
     5641 cccttcgacg cgaccgtgct cgagcggctc ggcgctgccg gcgccgtgac gctcggcaag
     5701 ctcaattgcg acgagttcgc gatgggttcg agcaacgaga actcggcgtt cggcgccgtg
     5761 aagaacccct gggacccgag ccgcgtcccg ggcggctcgt ccggcggctc ggccgcggcg
     5821 gtggccgcgc ggctgctgcc ggcggccacc ggcaccgaca ccggtggctc gatccgccag
     5881 ccggcgagct tcaccggcat caccggcatc aagccgacct atggcgtctg ctcgcgctac
     5941 ggcatggtcg ccttcgcgtc gagcctcgac caggccgggc cgctcgcgcg cagcgccgaa
     6001 gactgcgccc tgctgctcgg cgcgatgagc ggcttcgacc cgctcgattc gaccagcgcc
     6061 gagcgcccgc cgcaggactt ccatgcgcag atgctcgcgc cgcgcgcaaa cgcgagtgcc
     6121 accgagcccc tgaaaggctt gcgcatcggc ctgccgaagg aattctttcc ggccgcgctg
     6181 cgccaggatg tggagcgcgc ggtgcgcggc gccttggccg agtgcgagcg ccttggcgcc
     6241 acgctcgtcg acgtgagcct gccgcgcacc gagctttcga ttcccgtgta ctacatcatc
     6301 gcgccggcgg aggcatcgtc gaacctgagc cgcttcgacg gcgtgcgcta cggccatcgc
     6361 gccgcgcact acggcgacct gctcgacatg tacaagaaga gccgcagcga aggcttcggc
     6421 gccgaagtca agcgccgcat catgatcggc acctacgtcc tctcgcacgg ctactacgac
     6481 gcctactacc tgcaggccca aaagctgcgc cgcatgatcg ccgacgactt ccaggcgtgc
     6541 tttcgcgaat gcgacctcat cgccgggccg gtggcgccga gcgtcgcctg gaagctcggc
     6601 gcgcagagcg aggacccggt ggcgaactac ctggccgaca tcttcacgct accggccagc
     6661 ctcgcgggcc tgcccggcat gagcgtgccc gccggcttcg gcgaaggcgc gatgccggtc
     6721 gggctgcaac tgatcggcga ctatttccag gaaggcacgc tgctgcacgc cgcccatgcg
     6781 ctgcagcagg caaccgactg gcacagccgc acgccgcccg gctattgatg gcatgaacac
     6841 tcctgccctc acccgcggct acgaagtcgt gatcggcatc gagacgcatg cccagctctc
     6901 gacgcgctcg aagatcttca gcggctcgtc gacggcattc ggtgcggcgc cgaacacgca
     6961 ggcctcggcg gtcgatctgg cgctgcccgg caccctgccg gtgctcaacc gcggtgccgt
     7021 ggaacgggcg atccgcttcg gcctcgcggt cgaaggcagc gtggcgccgc attcgatctt
     7081 cgcgcgcaag aactacttct accccgacct gccgaagggc taccagatca gccagtacga
     7141 gacgccggtc gtgcagggcg gcagggtgtc tttcctggtc gcgggcgtgc cgcacacggt
     7201 gaacctcacc cgcgcccacc tcgaggaaga cgccggcaag tcgctgcacg aggactatca
     7261 aggccagagc ggcatcgacc tcaaccgcgc cggcacgccg ctgctcgaga tcgtgaccga
     7321 gcccgacatg cgctcgagcg aggaggccgt ggcgtatgcg aagcagcttc acgccatcgt
     7381 cacgtggaac gatctgtgcg acggcaacat gcaggaaggc agctttcgct gcgacgccaa
     7441 cgtgtcggtg cgcaagcccg gcgcgcccta cggcacccgg cgcgagatca agaacctgaa
     7501 cagcttcaag ttcatgcagc aggcgatcga ctacgagatc gagtggcaga tcgacctcct
     7561 cgaagacggc ggcagcgtgc accaggcgac cgtgctgttc gatcccgaca gcggttcgac
     7621 gcgcgcgatg cgcagcaagg aggacgccgc cgactaccgc tacttccccg atcccgatct
     7681 gccgcccctc gtgatcgcga aggagtggat cgaccgggtg cgcaacgcca tgcccgagca
     7741 gccggacgtg aagatgcagc gctaccagga caagttcggg ttgtcggcct acgacgcggc
     7801 cctcatgacg caaagccgcg ccatgtccag ctttttcgaa gccacggaat cggcttgccg
     7861 gcgcccgaaa ctggcggcga actggctgac gggcgaagtc tcgcgccggc tcaacgccga
     7921 agggcgaagc atcgaggact gcccggtgcg ccccgagacg ctgggcgcgc tgatcacgcg
     7981 catcgtcgac cagatcatct cgaacagcgc ggccaagcag gtgctggacg cgctgtggaa
     8041 cgatccgggc aagcgcctcg acgacgtcat catcgagcag ggccacgagc agatgagcgc
     8101 aacggaactc ggccgcatcg tcgatgaggt gctcgcggcg aatccgaaat cggtcgagga
     8161 gtaccgcgcc ggcaaggaga aggcgttcaa cgcgctggtc ggccaggcca tgaaggcgac
     8221 ccggggcaag gctaaccccg agcaggtcaa cgccctgctc aagaacaaac tgggctaaag
     8281 cgcgcctacc tggccgctgc cttcggggca tacccttggg ccgccggcgg cggccccgat
     8341 gccgacccgg ccgggccgag cgaaccggcg ggaccgccgg cccacagctt tttcaggcgc
     8401 gcgagttcga ggtcatacag cccgttgatc cgtaccactt cggtctcctg gttctggatc
     8461 agcgagcgct gagcggccag ggctgcgtcg ttcgcgtcga gctggtcctt cagcttggcc
     8521 ggcaagtcct tgccgacata gaactcggcc tcgtcgagca agggcttgcg ctcggccatc
     8581 agaagcttga cgcgcgcctc cgatgtgcgc accgaattgc gcacatcgtc cagcgccgcc
     8641 tcgcgcgcct tgcgatgcgc ggcctcgttc gaaaagcgcg ccatgaggtt gcgatcgcgc
     8701 cgggtcgcgt cctgcctggc cacccttgcg gccgcggctt cgcgctcgcg ggcctcggcc
     8761 tcgccgcgct cgtcggcagt cagcgtaggc gggatgatgc gcttgagcga gccatcggaa
     8821 ttgagctcgc gctgctcgcg gtcgctgcac tccggaatca gtcggtcgga ggtcaggcgc
     8881 ttgccgcgcg cgtcggtgca agtgtagatc gtcttccccg cgggagcggc gttctgcgcc
     8941 cacgcgatcg ggctcgcggc cagca
//
LOCUS       DASVHM010000747         2691 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1138077, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000747 DASVHM010000000
VERSION     DASVHM010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1138077"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..2263
                     /gene="uvrA"
                     /locus_tag="VF308_13730"
                     /pseudo
     CDS             1..2263
                     /gene="uvrA"
                     /locus_tag="VF308_13730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560451.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
     gene            2313..>2691
                     /locus_tag="VF308_13735"
     CDS             2313..>2691
                     /locus_tag="VF308_13735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007829614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEX7437763.1"
                     /translation="MSTTIDYYLAPQSPWTYLGHQRFTAIAKAANATVVLLPIDLGKV
                     FPVSGGLPLAKRAPQRQAYRLVELKRFADHLGLPINLQPAFFPVVGDAAAKLIIAVDL
                     HDGTDAAMALAGAVLRGVWVEQRD"
BASE COUNT          448 a         1002 c          856 g          385 t
ORIGIN      
        1 gggcgcggag gccggccccg ggagcggcgc ggcggcgggc ctgcgccagc gcctcgccga
       61 aagcttcgaa gccgcgctgc ggatcgccga cggccgcgcg atcgcgttcg agatggacag
      121 cagccgcgag cacctcttct cgagcaagtt cgcctgcccg gtgtgcagct attcgctgtc
      181 cgagctcgag ccgcgcctct tctcgttcaa ctcgccggtc ggcgcctgcc cgacctgcga
      241 cggcctcggc cacaccaccg tcttcgatgc cgagcgggtc gtcgccttcc cgtccctcag
      301 cctcgcaagc ggcgcggtca agggctggga ccgccgcaac gcctacacgt tctcgatgct
      361 cgaaagcgtg gcgagccact acggcttcga catcgacacg ccgttcgaag atctgcccga
      421 cccggcgcgc acggtgctgc tgaacggttc gggcgccgac gaggtctcgt tcacctacga
      481 ggccgaaggc gcgcgcggca aacaacgccg cctcaagcgc aagcatccgt tcgagggcat
      541 cctgccgaac ctcgaacggc gcttccgcga gaccgattca cccgccgttc gcgaagacct
      601 gatgcgctac cagagcgcat agccctgccc cgactgccac ggcacgcgcc tgaaaagcga
      661 ggcgcgccac gtgttcctgg tcgacgcaga cgccgccggc gcggtgcggc gcgagccgat
      721 ctttcgcgtc gagcacttca cgctgcgcga ggccctcgac tatttcgacc ggctgaccct
      781 gcagggcgcg aaagccgaga tcgccgacaa ggtggtgcgc gaaatctgtt cgcgcctcaa
      841 gttcctcaac gacgtcggtc tcaactacct cagcctggac cgcaatgccg actcgctctc
      901 cggcggcgag gcccagcgca tccgcctcgc ctcgcagatc ggctcgggcc tcaccggggt
      961 gatgtacgtg ctcgacgagc cttcgatcgg gctgcaccag cgcgacaacg cgcgcctgat
     1021 cggcacgctg cggcatctgc gcgacatcgg caacagcgtg ctcgtcgtcg agcacgacga
     1081 agaagcgatc tgggccgccg accacgtgat cgacatggga ccgggcgccg gcgtccacgg
     1141 cggccgcgtg atggccgagg gcacgccggc cgaagtcgcg gcgagcccgg agtccctcac
     1201 cggccgctat ctcgccggca cgctgcgcat cccgatgccg aatcagcgcc gccggcttgc
     1261 cgacggcggc gaggtgctgc gcatcgtcaa cgcgcgcggc aacaacctga agaacgtgat
     1321 cgcggaactg ccggtcgggc tcttcacctg cgtgaccggc gtctccggct ccggcaagag
     1381 cacgctggtc aacgacacgc tgtacgcgac ggtcgcgcgc aagctctaca acagccacac
     1441 cgagcccgag ccggccgacg caatcgaagg cctggaggcg ttcgacaagg tcatcaacgt
     1501 cgaccagtcg ccgatcggac gcacgccgcg ctcgaacccg gccacctaca ccggactgtt
     1561 cacgccgatc cgcgagctct tcgccgaagt gccggcggcg cgcgaacgcg gctacggacc
     1621 ggggcgcttc agcttcaacg tcgccggcgg gcgctgcgaa gcgtgccagg gcgacggcgt
     1681 gctgaaggtc gagatgcact tcctgcccga cgtctacgtg ccctgcgacg tctgccacgg
     1741 caagcgctac aaccgcgaga cgctcgagat cctctacaag gggcgcaaca tcaccgaggt
     1801 gctcgacctc acggtcgaag tcgcgcacgg ttacttcagc gccgtaccca acatcgcgcg
     1861 caagctccag accctgctcg atgtcggact cggctacatc cgcctcggcc agagcgcgac
     1921 cacgctttcc ggcggcgagg cgcagcgcgt caagctcgcg ctcgaactct ccaagcgcga
     1981 caccggccgc acgctctaca tcctcgatga gccgaccacc ggcctgcact tcgccgacat
     2041 cgccctgctg ctcaaggtgc tgcaccagct gcgcgacgcc ggcaacacga tcgtcgtgat
     2101 cgagcacaac ctcgacgtca tcaagacggc cgactggctg atcgacatgg gccccgaagg
     2161 cggcgccggc ggcggcaccg tggtcgcggt gggaaccccg gagagcgtcg ccgcgaaccc
     2221 ggccagcttc accgggcgct acctgaagcc gctgctggcc tgactccagg gcctgcccta
     2281 gactggctgc ctcccgcatc gaaggcgccg ccatgagcac gacgatcgac tactacctcg
     2341 cgccccaatc gccgtggacc tacctcgggc accagcgctt cacggccatc gccaaggccg
     2401 cgaacgcgac ggtcgttctc ttgccgatcg acctcggcaa ggtgttcccg gtctcgggcg
     2461 gattgccgct cgccaagcgc gcgccacagc gccaggccta ccgactggtc gagctcaagc
     2521 gcttcgccga ccatctgggt ctgccgatca acctgcagcc ggccttcttt ccggtcgtgg
     2581 gcgacgctgc cgcgaaactc atcatcgcgg tcgacctgca cgatggcacc gatgccgcga
     2641 tggcgctcgc aggggcggtg ctgcgcggcg tctgggtcga gcagcgcgac a
//
LOCUS       DASVHM010000748         2491 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1138231, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000748 DASVHM010000000
VERSION     DASVHM010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2491
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1138231"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..975
                     /locus_tag="VF308_13740"
     CDS             <1..975
                     /locus_tag="VF308_13740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437764.1"
                     /translation="GMGSGVPALLGVGAVAVALGLLAYAVLLANNLRGARGMPGVVAH
                     GWAALVCLLVVLATALALALAYLGASWLDRATALALHIAFAAYGFMGLLALGLSGILV
                     PMFALSAAPDERQSIASCALAVTALVLAALAAFGVAPQPLRVLAIGIGGGAVALHLRL
                     MRAALRTGMRRALGRSFTLVRIGWASLVVSLIAALAVVLDAPLAGLPTLFGLTLIGGW
                     LLTFLLGILQRILPFLASMHAARGSKRPPTPSSLSADRPLAIHFFCHLAALAGLALAV
                     VADSPMIAASAAGVGALGAAAFGAFFLLLLRRMHGGVPSPQPHVRPAS"
     gene            1041..1526
                     /locus_tag="VF308_13745"
     CDS             1041..1526
                     /locus_tag="VF308_13745"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEX7437765.1"
                     /translation="MRQVSHTLDTEHRANLDLLGRVEQAFARAPRANAARDPDFIKLA
                     AAFGRLIEQDIGRHFDFEERELFPRMTEAGEGDIAELLKEEHDAIRAVAAEILPLARA
                     AAAGTLDNSGFDHLKRGALEMVERQVAHIQKETMALLPLLEDLLDEDMDRELAFAYAS
                     A"
     gene            1555..>2491
                     /locus_tag="VF308_13750"
     CDS             1555..>2491
                     /locus_tag="VF308_13750"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX7437766.1"
                     /translation="MEAIATEHLAVRALTPDDLAQVVAIDAAIEGRSRRAYVERRLAA
                     ALRDPALHAQFAAIDDKGLAGHILARVLEGEFGRGGRSLRLELVGVRPDTRGHGVGTH
                     LFDALAQWARRHAIQDLRTSAAWNDFAMLQWLDGMGFRLAPNCIVDCAVDGGAYLPER
                     DDAIALPVGDGPGHEISFSATGGNDFERLARDTADVHSMTPADLGDIVRIDRDITGRD
                     RSEYIRAKLAEAMDDSSLRVSLAARRDGTNVGYLMARVDRGDFGRTEPVVVIDTLGVD
                     PEYARRGVGRALLSQLFANLGALRVERVETVVAQRD"
BASE COUNT          318 a          878 c          886 g          409 t
ORIGIN      
        1 ggaatgggca gtggtgtgcc tgcgctgttg ggggtgggtg cggtggccgt ggcgctgggg
       61 ttgctcgcct atgcggtgtt gctggcgaac aatctgcgcg gcgcgcgcgg catgccgggc
      121 gtggtggcgc acggctgggc agcgctggtc tgcctgctgg tggtgctggc cacggcgctc
      181 gcgctcgcgc tcgcttacct gggcgcgtcc tggctcgatc gtgcgacggc cctggcgctg
      241 cacatcgcct tcgcggccta cggcttcatg ggcctgctgg ccctcgggtt gtcgggcatc
      301 ctggtgccga tgttcgcgct ctcggcggcg cccgacgagc gccagtcgat cgcgtcgtgc
      361 gcgctcgccg tgacggcgct ggtgctggcg gcgctggcgg cgttcggggt cgcgccgcag
      421 ccgctgcgcg tcctcgcgat tggcatcggc ggcggcgcgg tggcgctgca tctgcggctg
      481 atgcgcgcag cgttgcgcac cggcatgcgg cgcgcactcg gccgctcgtt cacgctggtg
      541 cgcatcggct gggcctcgct cgtcgtcagc ctgatcgccg cgctcgccgt cgtgctcgat
      601 gccccgctgg ccggcctgcc caccctgttc gggctcacgc tgatcggcgg ctggctgctg
      661 acgttcctgc tcggcatcct gcaacgcatc ctgccgttcc tcgcctcgat gcacgcggcg
      721 cgcggcagca agcggccgcc cacgccgtcc tcgttgagcg cggatcgccc gctcgcgatc
      781 catttcttct gtcacctggc ggcgctggcg gggctcgcgc tggccgtcgt ggccgacagt
      841 ccgatgattg ccgcgtcggc ggccggtgtc ggggcgctgg gcgcagcggc attcggcgcg
      901 ttcttcttgc tcctgctgcg ccgaatgcac ggcggcgtgc catctccgca gccccacgtc
      961 cggcccgcgt cttgagttgc atcaagggcg tcgttccttg tgttcgctat tctgattgat
     1021 tggatcgccc cgtgagcttc atgcgccagg tcagtcacac gctcgacacc gaacatcgcg
     1081 ccaatctcga cctgctcggc cgcgtcgagc aggcgttcgc gcgggcgccg cgcgcgaacg
     1141 ccgcacgcga ccccgatttc atcaagctcg ccgctgcgtt cggccgcctc atcgagcagg
     1201 acatcgggcg ccatttcgac ttcgaggaac gcgagctgtt cccgcgcatg accgaggccg
     1261 gcgaaggcga catcgccgag ctgctgaaag aagagcacga cgccatccgc gcggtggctg
     1321 ccgaaatact gccgctggcg cgcgccgctg ctgcgggaac actcgacaac agcgggttcg
     1381 accatctcaa gcgcggtgcg ctcgagatgg tcgagcgcca ggtggcccac atccagaaag
     1441 agacgatggc gctgctgccc ttgctcgagg acctgctcga cgaggacatg gatcgcgagc
     1501 tggcattcgc ctatgcatcg gcctagggcc agttcacacc acggagagac gaggatggaa
     1561 gccattgcca cggagcatct cgcggtgcgc gcactgacac ccgacgacct ggcgcaggtt
     1621 gtcgccatcg acgccgccat cgagggccgc tcgcggcggg cctatgtcga gcggcgcctg
     1681 gctgccgcgc tgcgcgatcc cgcgctgcat gcgcaattcg ccgcgatcga cgacaaggga
     1741 ctcgccggcc acatcctcgc gcgcgtgctc gagggcgaat tcggccgcgg cggacgcagc
     1801 ttgcggctcg agctcgtcgg cgttcggccc gacacgcgcg ggcacggcgt gggcacgcac
     1861 ttgttcgacg cgctcgcgca atgggcccgg cgccacgcca tccaggacct gcgcacgtcg
     1921 gcggcgtgga acgacttcgc gatgctgcaa tggctggacg gcatgggctt ccggctggcg
     1981 ccgaactgca tcgtcgactg cgcggtggac ggcggcgcct acctgcccga gcgcgacgat
     2041 gcgatagcgc tgccggtcgg cgacggtccc ggccacgaaa tcagcttcag cgcaacgggc
     2101 ggcaacgact tcgagcgcct ggcgcgcgac acggccgacg tccattccat gacgccggcc
     2161 gacctgggcg acatcgtgcg catcgaccgg gacatcaccg gccgcgaccg cagcgaatac
     2221 atccgagcca agctcgccga ggcgatggac gactccagct tgcgcgtctc gctcgccgca
     2281 cgcagggacg ggacgaacgt cggctacctg atggcgcgcg tcgaccgcgg cgacttcggc
     2341 cgcaccgaac cggtggtcgt catcgacacg ctcggcgtag acccggagta cgcgcggcgc
     2401 ggcgtcggcc gcgcgctgct gtcgcaactg ttcgccaacc tcggcgcgct gcgcgtcgag
     2461 cgggtggaga cggtggtcgc gcagcgcgac c
//
LOCUS       DASVHM010000749         3093 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_558954, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000749 DASVHM010000000
VERSION     DASVHM010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3093
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_558954"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..746
                     /locus_tag="VF308_13755"
     CDS             189..746
                     /locus_tag="VF308_13755"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011516735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEX7437767.1"
                     /translation="MASPRNVAVVVGSLRKGSFNRKLALALAAMAPPALSLKIVEIGQ
                     LPLYNQDLDEQPPAAWVDFRQQIAQSDALLFITPEYNRSVPGPLKNAIDVGSRPYGKS
                     AWAGKPGAVISVSPGAIGGFGANHHLRQSLVFLNVPAMAQPEAYIGGADKLFAEDGSI
                     SNPATREFMTRYLAAFEQWITRNAT"
     gene            complement(751..1653)
                     /gene="ltnD"
                     /locus_tag="VF308_13760"
     CDS             complement(751..1653)
                     /gene="ltnD"
                     /locus_tag="VF308_13760"
                     /EC_number="1.1.1.411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011462771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonate dehydrogenase"
                     /protein_id="HEX7437768.1"
                     /translation="MNESVGVIGLGAMGMGMARSLRRAGYRVHVCDVRAEAAQAFAAE
                     GGVAYANPDGVAAQCEVVVSVVVNAAQTEAVLFGEHGAAAALEPGSVFVMCSTVAPNW
                     SIALEKRLEALGLLYLDAPISGGAARAASGQMTMMTSGRPEAYAKAGAALDAMAAKVY
                     RLGDAAGPGSKVKIINQLLAGVHIAAAAEAMALGLREGVDAAALYEVITHSAGNSWMF
                     ENRMAHVLAGDYTPLSAVDIFVKDLGLVLDTARATKFPLPLSATAHQMFMQASSAGHG
                     GEDDAAVIKIFPGITLPGKAGPQP"
     gene            complement(1940..>3093)
                     /locus_tag="VF308_13765"
     CDS             complement(1940..>3093)
                     /locus_tag="VF308_13765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437769.1"
                     /translation="WHEGLLPPLEALPAAERAAALADYRRFGAAVARIGTGRAFAIPT
                     ARAARSPALDALGQVTFAHWLDTEGLAAPALRWYLDYCCRDDYGAGAAQVSAWAGIHY
                     FASRHGFHAPGDASEERDGILTWPEGNAWFSRRLAAPLGERMHASRVALRVVEGRHDA
                     SVDFWNAAERRAERWSAPQVVLAVPLFIAARLLATPPAALVEAVQAMRHAPWLVANLH
                     LDSALDDRSGAAPSWDNVIYRSPTLGYVDATHQSLLPYAGPTVLTAYWALGGDSAAQL
                     ASQRARLLDEPWSAWANAVVQDLAAAHPDLAAKLTRVDLMRYGHAMSIPLPGVRSSAA
                     LRSLAEAQPRVQFGHADLSGYSVFEEALYQGSRAARAVLRKQGGGRGST"
BASE COUNT          458 a         1106 c         1094 g          435 t
ORIGIN      
        1 gacgacgcca tcgtcaacgc cgacggctgc gagctgatca gccgcggcgt gcccgcggcc
       61 gcgccggaaa tcgaggcgct gatgcgcggc tgagaccgct cggctcggcg ggggtcgcgg
      121 ggccggcgcg atgcggaaaa gcgatccgga ccctaaactg gcccatcgct tcggcaaagg
      181 aatccgtcat ggcatcaccc agaaacgtcg ccgtcgtggt cggcagcctg cgcaagggct
      241 cgttcaatcg caagctcgcg ctcgcgctcg ccgcgatggc cccgccggcg ctgtcgctga
      301 agatcgtcga gatcggccag ctgcccctct acaaccagga tctcgacgag cagccgcccg
      361 ccgcctgggt cgatttcagg cagcagatcg cgcagtccga tgcgctgctg ttcatcacgc
      421 ccgaatacaa ccgctcggtt ccggggccgc tgaagaacgc gatcgacgtc ggctcgcgtc
      481 cctacggcaa gagcgcgtgg gccggcaagc ccggggcggt gatcagcgtg tcgccgggcg
      541 cgattggcgg gttcggcgcg aaccaccacc tgcgccagtc gctggtgttc ctgaacgtgc
      601 cggcgatggc gcagcccgag gcctacatcg gcggggccga caagctcttc gccgaagacg
      661 gctcgatctc gaacccggcg acgcgcgagt tcatgaccag gtacctggcc gcgttcgagc
      721 agtggatcac gcgcaacgcc acctgatccg ctagggctgc ggcccggcct tgcccggcag
      781 cgtgatgccc gggaagatct tgatcaccgc cgcatcgtcc tcgccgccat ggcctgcgct
      841 cgaggcctgc atgaacatct ggtgcgcggt ggccgacagc ggcaacggga acttggtcgc
      901 acgcgcggtg tcgagcacca ggccgaggtc cttgacgaag atgtcgaccg ccgagagcgg
      961 cgtgtagtcg ccggccagca cgtgggccat gcggttctcg aacatccagc tgttgcccgc
     1021 gctgtgggtg atgacctcgt acagcgccgc ggcgtccacg ccctcgcgca accccagcgc
     1081 catggcctcg gcggcggcgg cgatgtgcac gccggccagc agctggttga tgatcttgac
     1141 cttgctgccg gggcccgcgg catcgcccag cctgtagacc ttggcggcca tcgcgtcgag
     1201 cgccgcaccg gccttggcat aggcctcggg gcgacccgag gtcatcatcg tcatctgccc
     1261 cgaggcggcc ctggcggcgc cgccggagat cggcgcgtcg aggtagagaa ggccgagcgc
     1321 ctcgaggcgc ttctcgagcg cgatcgacca gttcggggcc acggtcgagc acatcacgaa
     1381 cacgctgccg ggctcgagcg ccgcggcggc accgtgctcg ccgaacagca cggcctcggt
     1441 ctgcgcggcg ttgaccacga cgctgaccac gacctcgcac tgcgcggcga ccccgtcggg
     1501 gttggcgtag gcgactccgc cttcggccgc gaaggcctgc gccgcctcgg cgcgcacgtc
     1561 gcacacgtgc acgcgatagc ccgcgcgacg cagcgaccgc gccatgccca tccccatcgc
     1621 gcccagcccg atcactccca cagactcatt cattgctcgc tcctcatgtc agtcttccac
     1681 ttggctttgc ttgccccgcg acgtatgaaa cactgcaacc tgcgtcagag cgcgcaaagc
     1741 cgtgggcggg cggcgggcgc agcgcctctg ctgcgctgct cggcgcagcg cagcgcagca
     1801 cagcacagcg gggatggagc ggtactccgc gacgacggcg acgcgtttga gggcccgtac
     1861 tcgggctccg cgttgccccc ccggcgcccc gcgcctctgc gcgcctgagt gtcacatccg
     1921 agagttctct gaaagagttt catgttgacc cccgcccgcc gccctgcttg cggagcaccg
     1981 cgcgcgcggc gcgcgatccc tggtacagcg cctcttcaaa aaccgaatag ccggaaaggt
     2041 cggcgtggcc gaactggacg cggggctgcg cttcggcgag cgagcgcaac gccgcgctgc
     2101 tgcgcacgcc gggcagcgga atgctcatcg catggccgta gcgcatcagg tcgacgcgcg
     2161 tcagcttcgc ggcaaggtcc ggatgggcgg cggcgaggtc ctgcaccacc gcgttcgccc
     2221 acgccgacca gggctcgtcg agcaggcgtg cacgctgcga tgcaagctgt gcggcggagt
     2281 cgccgccgag cgcccagtac gcggtcagta cggtcgggcc ggcataaggc agcaggctct
     2341 ggtgcgtcgc atcgacatag cccaacgtcg ggctgcggta gatgacattg tcccacgagg
     2401 gggccgcacc cgagcggtcg tcgagggcgc tgtcgaggtg caggttggcg acgagccagg
     2461 gcgcgtggcg catcgcttgc acggcctcga cgagtgctgc gggcggcgtc gccagcagcc
     2521 tcgcggcgat gaagagcggc accgcgagca cgacctgcgg cgcgctccag cgctcggcgc
     2581 gtcgctcggc agcgttccag aaatcgacgc tggcgtcgtg ccggccttcg accacgcgca
     2641 gcgccaccct cgacgcatgc atgcgctcgc cgagcggcgc ggccaggcgc cggctgaacc
     2701 aggcgttgcc ttccggccag gtgaggatgc cgtcgcgctc ttcgctggcg tcgcccgggg
     2761 catggaagcc gtgccggctg gcgaagtagt ggatgccggc ccaggccgac acctgcgcgg
     2821 cgccggcgcc gtagtcgtcg cggcagcagt agtcgaggta ccagcgcaac gccggcgcgg
     2881 cgagcccttc ggtgtcgagc caatgcgcga aggtgacctg gcccagcgcg tcgagggccg
     2941 ggctcctcgc tgcgcgcgcg gtcggtatcg cgaaggcgcg gccggtgccg atgcgcgcca
     3001 cggccgcgcc gaagcgccgg tagtcggcga gagccgcggc gcgctcggcg gcgggcagcg
     3061 cctccagcgg cgggagcagc ccttcgtgcc act
//
LOCUS       DASVHM010000750         5928 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1355536, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000750 DASVHM010000000
VERSION     DASVHM010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5928
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1355536"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            55..462
                     /locus_tag="VF308_13770"
     CDS             55..462
                     /locus_tag="VF308_13770"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX7437770.1"
                     /translation="MMQVPFCTQIGHTGPLMPSEVGRPIYLDQVAIDFPELVIVGGHI
                     GYPWTEEAIAVVTKHENVYIDTSAYTARRYPAALVEFMRSHGRTKVLFGSNYPMIMPA
                     RALDGLAALGLDEETKGLFLGANAQRVYKLSVA"
     gene            570..1976
                     /gene="iaaH"
                     /locus_tag="VF308_13775"
     CDS             570..1976
                     /gene="iaaH"
                     /locus_tag="VF308_13775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019936221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indoleacetamide hydrolase"
                     /protein_id="HEX7437771.1"
                     /translation="MDLTALTISEAAAALQRGEMTAEAYAEALLARAAAAADLNAFIH
                     HDPAQVRTAARSADRQRAGGASAGPLHGVPLALKDNLDTADMPTTAGTPGLRGNRPTR
                     NAPVVQKLLDAGAIVFGKANLHELAYGITSNNAAFGAARNPYDRTRIPGGSSGGVGVA
                     VAARMAPGGIGSDTGGSVRIPAALCGIVGLRPTTGRWSQAGIVPISHTRDTAGPMTRS
                     VADCVLLDRVVTGSVAAAAASLKGLRLGVPRAHFWDPLDAEVAHLMAGALAALKDAGA
                     VLVEADIADVGRLDNEAGFPIALYETVVDLDAYLAEHGSALRYPELVAQCASPDVKGM
                     LQSLVGAGAMPEAGYRHALDVLRPALQAAYRDYFRRHDVAAIVFPTTALPAAPIGDDE
                     TVLLNGERVPTFATFIRNSSPGSVAGIPGISLPAALTTAGLPLGLELDAPEGADARLL
                     SIALAVERVLPKMPAPKP"
     gene            2060..3247
                     /locus_tag="VF308_13780"
     CDS             2060..3247
                     /locus_tag="VF308_13780"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEX7437772.1"
                     /translation="MSHDFIPARRRILSAAAGTAVLGTSAGFMRPVFAQAKEFKIGFF
                     IALSGPASLFGPTQRACADLAAEKINKAGGIMGRPVKLIFTDAGGPPAETAKSAVRLM
                     LEDKVDLFIGSHDSATREANIATIKSKVPYIYSPVYEGGECSPNVYCLGETPPQQAQP
                     ATEFLAKEKKAKTFYLIGDDYVWPRKSNEQIKKYVAQYGGKVVGEEYVPFGAPNKFEE
                     AVTRIKGVKPDAVICTLVGADNVNFNRTFAGFGLDKGIARLSMLLEENTLMGIGAENS
                     ANLYSCMGYFANSPSEGAKKFKAEYMAKYGEKAPQLATIGADCYSALNLAKALFEKAG
                     ANDMKKLTAASEGLAFDTASGRVTMRGRQVDKDMYLASCKGTDFEVFKTIKAVKSGTA
                     CKV"
     gene            3286..4140
                     /locus_tag="VF308_13785"
     CDS             3286..4140
                     /locus_tag="VF308_13785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019572213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437773.1"
                     /translation="MEPVLVAQALNALFGIASLAILALGLAVVLGLLGVLNLAHGELV
                     MIGAYCVYVTQANGWPFLAAVPLAIAVCGVLGYAVERWLVRPLYQRPFDTLVVTWGLS
                     LLLRKCAEAMFGLGYKSLSEPIGGTVEVLGATYPRYRLVLIAVSAVVLGGLVLWYGRS
                     RTGTRIKAMVGNPELARALGIPVARYASATFVVGTCLAGLGGVMIAPLVPVQPFMGLD
                     HILMSFFVLVVGGLGSVGGLLTGATVIGGANSIVSAISDSTGGYFCVLALAILFLWLK
                     PRGIHAQS"
     gene            4127..5848
                     /locus_tag="VF308_13790"
     CDS             4127..5848
                     /locus_tag="VF308_13790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019936224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7437774.1"
                     /translation="MRRASVAIAALLLTPLVVGDFWAYQLGLLYLYAIAALGLGLCWG
                     RAGFLPLGQGLFFGLAAYLSGLALIEFDQSPWLLVLIPLAACVPGLLAFLIGTLVFRR
                     RGESGPYFSMITLALALLAYQLANNWESVTGGFNGLKGIPGLPGLDSYTAAYYVAAIA
                     LVLSTLGTAWLYRAPLGVLWAALAHNERRVVMFGFDTNRLKAVAFGVSGLLAGIGGAL
                     YAPQQGLVTPQLCGFALSADLVIWAAVGGRGRLLGPVLGAILIGALTSGLRDRFQFWE
                     ITIAVVFILVVLLFPQGLIGVFAPLERWLDRGRRRADEIAAPPRADVGAGAKLALEGI
                     DVKLGEVTILDRLSLVFDRPGIYCMIGPNGAGKTSTFNMLTGELPAQAGRVLFDGRAI
                     DRLHTHRIVRLGIGRKFQIPSVFAHLSIADNIAIALWSGRAKPLDQLRPRLRRWTSPV
                     LDALRVRYPFLADAGRTASQLSHGERQILELSMALLGEPRLLLLDEPCAGLSPQETAE
                     VIDVIRWASERRGATIVVIEHDMSLVRKLADHVFVLHNGSLLAQGSVAEIQANAAVQA
                     IYVGAEK"
BASE COUNT          878 a         2103 c         1995 g          952 t
ORIGIN      
        1 atgcattgac accatgcctt tgggccaatc cgcgacacga cgaaggagac gacgatgatg
       61 caggttcctt tctgcacgca gatcggacac accggcccgt tgatgccgtc cgaggtcggg
      121 cggcccatct atctcgacca ggtggcgatc gactttcccg aactcgtgat cgtcggcggc
      181 cacatcggct atccctggac cgaggaagcc attgcggtcg tcacgaaaca cgagaacgtc
      241 tacatcgata cgtcggcgta tacggccaga cgctacccgg ccgcactggt cgagttcatg
      301 cgcagccatg gacgcacgaa agtgctcttc ggcagcaact acccgatgat catgccggcc
      361 agggcgctcg acgggctggc cgcgctcggg ctcgacgagg agacgaaggg cctgttcctc
      421 ggcgccaacg cgcaacgcgt ctacaagctg tccgtggctt gatcggcgcc gcggcaggcc
      481 tcgacgcgcg acgagtcacg ctatgatgaa tcgctcccat gcggcgtgcg gacgatgccg
      541 gcgcggggcc ggccttctcg aggggaatca tggatctcac cgctctcacg atcagcgagg
      601 ccgcggccgc cctgcagcgc ggcgagatga cggccgaggc ctatgccgag gccctgctgg
      661 cccgcgccgc tgccgccgct gacctcaacg ccttcatcca ccacgacccg gcccaggtgc
      721 gcaccgcggc gcgcagcgcc gatcgacaac gcgcgggcgg cgcgagcgcc gggccgctgc
      781 acggcgtgcc gctcgcgctg aaggacaacc tcgacaccgc cgacatgccg accaccgccg
      841 gcacgccggg cttgcgcggc aaccgaccga cgcgcaacgc gccggtcgtg cagaagctgc
      901 tcgatgccgg cgccatcgtc ttcggcaagg ccaacctgca cgagctcgcc tacggcatca
      961 ccagcaacaa cgccgccttc ggcgcggcgc gcaatcccta cgaccgcacg cgcatcccgg
     1021 gcggatcgag cggtggcgtc ggcgtggccg tcgcggcgcg catggcgccg ggcggcatcg
     1081 gctcggacac cggcggttcg gtgcgcatcc ccgcggcact gtgcggcatc gtcggcttgc
     1141 ggccgacgac cggacgctgg tcgcaggccg gcatcgtgcc gatctcgcac acccgtgaca
     1201 cggctgggcc gatgacgcgc agcgtcgccg actgcgtgct gctcgaccgc gtcgtcaccg
     1261 gcagcgtcgc ggctgcggcg gcgagcctca aaggcctgcg cctcggcgtg ccgcgcgcgc
     1321 acttctggga tccgctcgat gccgaggtgg cgcacctgat ggcgggcgcg ctcgccgcgc
     1381 tgaaggacgc cggcgcggtg ctggtcgagg ccgacattgc cgatgtcggg cgcctcgaca
     1441 acgaagccgg ctttccgatc gcgctctatg aaacggtggt cgacctcgac gcttacctgg
     1501 ccgaacacgg ctcggcgctg cgctacccgg aactcgtcgc gcaatgcgcg agccccgatg
     1561 tgaagggcat gctgcagagc ctggtcggcg ccggcgcgat gcccgaagcc ggctaccgtc
     1621 acgcgctcga cgtcctgcgt ccggcgctcc aggccgctta tcgcgactac ttccggcgcc
     1681 acgacgtcgc agcgatcgtg ttcccgacca cggcgcttcc cgccgcgccg atcggcgacg
     1741 acgaaacggt cttgctcaat ggcgagcgcg tgccgacgtt cgcgaccttc atccgcaatt
     1801 cgagtcccgg cagcgttgcc ggcatccccg gcatcagcct gccggcagcg ctgacgacgg
     1861 cgggcctgcc gctcggcctg gagctcgacg cgcccgaggg cgccgatgcg cgactgctgt
     1921 cgatcgcgct cgccgtcgag cgcgtgctgc cgaagatgcc ggcaccgaag ccgtgaggat
     1981 tgcgtcgttc gattcttgac aaggttctgc tcgcgccgcg agcagagggt tcaacgagaa
     2041 aaccgaggag gagatcacca tgagccatga cttcattccc gcgcgtcgcc gcatcctgtc
     2101 ggcagccgcc ggcaccgcgg tgttgggcac ttcggccggc ttcatgcggc ccgtcttcgc
     2161 gcaggccaag gaattcaaga tcggcttctt catcgcgctg agcggcccgg cgtcgctgtt
     2221 cggcccgacg cagcgcgcct gcgccgacct cgccgccgag aagatcaaca aggccggcgg
     2281 catcatgggc cgtccggtca agctgatctt caccgatgcc ggcggtcccc ccgcggagac
     2341 tgcgaaatcg gcggtgcgcc tgatgctcga agacaaggtc gaccttttca tcggctcgca
     2401 cgacagcgcc acgcgcgagg ccaacatcgc gacgatcaag agcaaggtac cctacatcta
     2461 ttcgccggtc tacgaaggcg gcgagtgctc gcccaacgtc tactgcctcg gcgagacgcc
     2521 gccgcagcag gcgcagcctg ccaccgagtt cctcgccaag gagaagaagg ccaagacctt
     2581 ctacctgatc ggcgacgact atgtctggcc gcgcaagtcg aacgagcaga tcaagaagta
     2641 cgtggcccag tacggcggca aggtcgtcgg cgaggagtac gtgccgttcg gcgcgcccaa
     2701 caagttcgag gaggcggtca cgcgcatcaa gggggtgaaa ccggatgcgg tgatctgcac
     2761 cctggtcggc gccgacaacg tcaacttcaa ccggacgttc gccggtttcg ggctcgacaa
     2821 gggcatcgcc cgactctcga tgctgctcga ggagaacacg ctgatgggca tcggcgccga
     2881 gaacagcgcg aacctctatt cgtgcatggg ctatttcgcg aacagcccgt ccgagggggc
     2941 gaagaagttc aaggccgagt acatggcgaa gtacggcgag aaggcgcctc agctcgcgac
     3001 gatcggcgcc gactgctatt cggcgctgaa cttggcgaag gcgctgttcg agaaggccgg
     3061 cgcgaacgac atgaagaagc tgaccgcggc gtcggaaggg ctcgcgttcg acaccgcgtc
     3121 gggccgggtc acgatgcgcg gccgccaggt cgacaaggac atgtacctcg cgagctgcaa
     3181 gggcaccgac ttcgaggtct tcaagaccat caaggcggtc aagagcggta cggcctgcaa
     3241 ggtgtgatgc cggccgtcgc ggcgcgcgcc gagtagcggg ccgcgatgga gccggtcctc
     3301 gtcgcccagg cgctgaacgc gctgttcggg atcgcgtcgc tcgcgatcct cgccctcggc
     3361 ctggccgtcg tgctgggcct gctcggggtg ctcaacctcg cgcacggcga gctggtgatg
     3421 atcggcgcct attgcgtcta cgtgacccag gccaacggct ggccctttct cgctgcggtg
     3481 ccgctcgcga tcgcggtctg cggcgtgctc ggctatgcgg tcgagcgctg gctcgtgcgg
     3541 ccgctttacc agcgcccgtt cgacacgctg gtcgtcacct ggggcctgag cctgctgctg
     3601 cgcaagtgcg ccgaggcgat gttcgggctc ggctacaaga gcctctccga accgatcggc
     3661 ggcacggtcg aggtgctcgg cgccacctat ccgcgctacc gcctcgtgct gatcgcggtc
     3721 agcgccgtcg tgctcggcgg cctcgtcctc tggtacggcc gcagccggac cggcacgcgc
     3781 atcaaggcga tggtcggcaa tccggagctg gcgcgtgcgc tgggcatccc ggtcgcccgc
     3841 tacgcgtcgg cgaccttcgt ggtcggcacc tgcctcgccg gcctcggcgg cgtgatgatc
     3901 gcgccgctcg tgccggtgca gccgttcatg gggctcgacc acatcctgat gtcgttcttc
     3961 gtgctggtgg tgggcgggct cggcagcgtc ggcggtctgc tcacaggggc gactgtgatc
     4021 ggcggggcca acagcatcgt ctcggccatc agcgacagca ccggcggcta tttctgcgtg
     4081 ctcgcgctgg ccatcctctt cctgtggctc aagccacgcg ggatccatgc gcagagctag
     4141 cgtcgcgatc gcggcgctgc tgctgacgcc cctggtcgtc ggagatttct gggcctatca
     4201 gctcggcctg ctctacctct acgcgatcgc cgcgctcggc ctcggcctgt gctggggccg
     4261 cgccggcttc ctgccgctcg ggcagggact tttcttcggg ctcgcggcgt atctgtcggg
     4321 cctggcgctg atcgagttcg accagagccc gtggctcctc gtgttgatcc cgctcgcagc
     4381 ctgtgtcccg gggctgctcg cgttcctgat cggaacgctg gtgttccggc gtcgcggcga
     4441 gagcgggccc tacttctcga tgatcacgct ggcgctggcg ctgctcgcct accagctcgc
     4501 aaacaactgg gagtcggtga ccggcggctt caacggcctg aagggcattc ccggcctgcc
     4561 cgggctcgac agctacaccg cggcctacta cgtcgcggcg atcgcgctgg tcctctcgac
     4621 gctcggcacg gcctggctct accgtgcgcc gctcggcgtc ctctgggccg cactcgccca
     4681 caacgaacgc cgggtcgtga tgttcggctt cgacaccaac cgcctgaagg cggtggcctt
     4741 tggcgtgagc ggcctcctcg ccggcatcgg cggtgcgctc tacgcgccgc agcaggggct
     4801 cgtgacgccg cagctctgcg gcttcgcgct ctcggccgac ctcgtgatct gggccgcggt
     4861 cggcgggcgc gggcggctcc tcggaccggt gctcggcgcg atcctcatcg gcgcgctgac
     4921 gagcggcctg cgcgaccgct tccagttctg ggagatcacg atcgcggtcg tcttcatcct
     4981 cgtcgtgctg ctctttccgc aaggtctgat cggcgtgttc gcgccgctcg aacgctggct
     5041 cgaccgtggc cgccggcgcg ccgacgagat cgcggcgccg ccgcgggccg acgtcggcgc
     5101 aggcgcaaag ctcgcgctcg agggcatcga cgtgaagctc ggcgaggtca cgatcctcga
     5161 tcgcctttcg ctcgtgttcg accgccccgg catctactgc atgatcggcc cgaacggcgc
     5221 gggcaagacc tcgaccttca acatgctgac cggcgagctg ccggcgcagg ccggccgcgt
     5281 cctcttcgac gggcgcgcca tcgaccgcct gcacacgcac cggatcgtgc gcctgggcat
     5341 cggtcgcaag ttccagatcc cctcggtgtt cgcacacctc tcgatcgccg acaacatcgc
     5401 catcgcgctg tggagcggtc gagcgaagcc gctcgaccag ctgcgcccgc gcctgcggcg
     5461 ctggaccagc ccggtgctcg acgcgctgcg cgtgcgctac cccttcctcg ccgatgccgg
     5521 ccgcaccgcg tctcagcttt cgcacggcga gcgtcagatc ctcgagctct cgatggcgct
     5581 gctcggcgaa ccgcgcctgc tcctcctcga cgagccgtgc gccggcctct cgccgcagga
     5641 gaccgcggag gtgatcgacg tgatccgctg ggcgagcgag cggcgcggcg cgaccatcgt
     5701 cgtcatcgag cacgacatga gcctcgtgcg caagctcgcc gaccacgtct tcgtgctcca
     5761 caacggcagc ctgctcgccc agggcagcgt cgccgagatc caggccaacg cggcggtcca
     5821 ggcgatttac gtcggggccg agaaatgaga ccgagcgccg ggccgtcccc aagccggact
     5881 ctccacgacc ggggactcca atgagcgcgc tgctcgaatt cgacggcg
//
LOCUS       DASVHM010000751         4245 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_127096, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000751 DASVHM010000000
VERSION     DASVHM010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127096"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..335)
                     /locus_tag="VF308_13795"
     CDS             complement(<1..335)
                     /locus_tag="VF308_13795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013396767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7437775.1"
                     /translation="MLTINKLSAGYGKVQVLHGISIEVPKGKVVTLIGSNGAGKTTTM
                     RAVSGMIAPTAGEITLNGRRIDGLESYHIAKLGLAHSPEGRRIFATMTVLDNLMLGAF
                     ARLTGSRPKG"
     gene            complement(343..2295)
                     /locus_tag="VF308_13800"
     CDS             complement(343..2295)
                     /locus_tag="VF308_13800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     ATP-binding protein/permease"
                     /protein_id="HEX7437776.1"
                     /translation="MRPTRLALSAAAVAALALFPVAIQNPYYIHLLETIMIYAIVLFG
                     LDIVVGYTGQVSLGHAGLFGIGAYTAGVMVMKLGTPLLVTLISAIGVTAVFGALLALP
                     ALRVTGPYLAMVTLAFGTIIQILINEMTFLTEGPLGIKLTKPALLGVRLDETEFFWLV
                     AVLLVLSLIFVHRLLRSQLGRAFEALRGSPVASDCMGVSVYRYKVYAFVISAGLAGLA
                     GALYAFSEQYISPNTYNFELTVLFLLAVIMGGRKTRSGALLGATIIVLLPKLLDDLEL
                     FRYVSCTIALVVVIGAAITLKRGTTTPQRVAVPVVGSIALAGLSFVLTTMTDWRLSIF
                     GLITLFVVYYLQDGIVGFVRNALNLKSHPTDDAETASDKVSIGDAVGTATVSKPGDVL
                     TASGVLMQFGGLKALDDVDLVVKRGTIHGLIGPNGSGKSTMMNVLTGIYVPSAGTIAF
                     CGESVVGKTSSAIALSGIARTFQNVQLFGEMTALQNVMVGLHHTFASNLLDVALHTPR
                     YRRENRLATERGMGLLAFVGLADLAHEEARNLPYGKQRALEVARALALDPQLLLLDEP
                     AAGLTAPDIKELIAIIRKIREHGVTVILIEHHMDVVMSICDTVSVLDFGQKIAEGEPA
                     RVQADPKVIEAYLGGEASEIAGVQPA"
     gene            complement(2300..3175)
                     /locus_tag="VF308_13805"
     CDS             complement(2300..3175)
                     /locus_tag="VF308_13805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437777.1"
                     /translation="MQILTQLVFSGIALGMIYAVIAFGYQLTFATSDTLNFGQGDALM
                     LGAMVGLTLVNHGVNYWLMIPLVCLFGAAQGAVVERIGVRPAIKIKSEFGWIMSTIAL
                     GIIFKNVAENVWGRDDLKFPSPLPESPLHFLGANVLPMEILVVVGAILMMLAVEIFNR
                     RSIYGKAVVATFNDRDAAKLMGINTGLVITFSYALSSLTAAFAGVLIAPITLTGATMG
                     AVLGLKAFAVAIIGGLTSGMGIIVGGIILGIAETTTGFYLSTGYKDVPGLVLLLVVLA
                     VKPAGLFGKTAIKKV"
     gene            complement(3275..>4245)
                     /locus_tag="VF308_13810"
     CDS             complement(3275..>4245)
                     /locus_tag="VF308_13810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007576862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437778.1"
                     /translation="INKEKVAAVVGYINTGVALASQRFFQEAKIPVMNNVATGSIVTH
                     QFDDQPENYIFRNAAHDSIQAPMIVEEAITRRGYKKVAILADSTNYGQLGREDLEKAL
                     ALKGVKAVAVEKFNIKDVDMTAQLLKAKEAGAEAVLTYGIGPELAQIANGMTKLGWKV
                     PMIGSWTLSMANFIDNAGPGGEGARMPQTFVQEPTTPKRQSFIISYLKTFNPKNARID
                     SPVSAAQGYDSVYLLAAAIKQAGSTDGPKIKAALENLATPVEGVVTTYTKPFSKTDHD
                     AITVNIPVFGEVKGQRVVYAYPDDQKKASEVRVKDVNAKGALAIKK"
BASE COUNT          745 a         1320 c         1437 g          743 t
ORIGIN      
        1 cctttaggtc tgctgccggt gagccgcgca aaggcgccca gcatcaggtt atcgaggacg
       61 gtcatcgtcg cgaaaatgcg ccggccttcg ggcgaatgag ccagacccag cttggcgatg
      121 tggtacgact cgagcccgtc gatgcgccgg ccgttcagcg tgatttcgcc ggccgtcggc
      181 gcgatcatcc cggagaccgc ccgcatcgtc gtcgtcttgc cggcgccgtt ggagccgatc
      241 agcgtgacga ccttgccttt cggcacctcg atcgagatgc cgtgcagcac ctggaccttg
      301 ccgtagccgg ccgagagttt gttgatggtc agcatggcgt cctcatgcgg gctggacacc
      361 ggctatctcg gaggcctcgc cgccgagata ggcttcgatc accttcggat cggcctggac
      421 ccgggccggc tcgccctcgg cgatcttttg gccgaagtcg agcaccgaca ccgtgtcgca
      481 gatgctcatg accacgtcca tatggtgctc gatcaggatc accgtcacgc cgtgctcgcg
      541 gatcttgcgg atgatcgcga tgagctcctt gatgtccggc gccgtcaacc ccgccgccgg
      601 ctcgtcgagc agcaggagtt gcgggtcgag tgccagcgcc cgtgccacct cgagcgcgcg
      661 ctgcttgccg taggggaggt tcctggcctc ttcatgggcc aggtcggcga gaccgacgaa
      721 ggcgagcagc cccatgccgc gctcggtggc gagccgattc tcgcgccggt agcgcggcgt
      781 gtgcagcgcc acatcgagga gattgctcgc gaacgtgtga tgcaggccga ccatcacatt
      841 ctgcagggcc gtcatctcgc cgaacagctg gacgttctgg aacgtgcggg cgatgcccga
      901 aagggcgatg gcggacgagg ttttgccgac gacggattcg ccgcaaaacg cgattgtgcc
      961 ggcgctcggc acgtagatgc ccgtcagcac gttcatcatc gtgctcttgc cggagccgtt
     1021 cggtccgatc aggccgtgga tcgtgccgcg cttgacgacg agatcgacgt cgtcgagcgc
     1081 cttcaggccg ccgaactgca tcagcacgcc cgaagcagtc aacacgtcgc ccggcttgga
     1141 aacggtggcc gtgccgacgg cgtcgccgat gctgaccttg tccgatgccg tctcggcgtc
     1201 gtcggtcgga tgcgacttga ggttcagagc attgcgcacg aagccgacga tgccgtcctg
     1261 gaggtagtag acgacgaata gcgtgatcag gccgaagatc gacaggcgcc agtcggtcat
     1321 ggtcgtcagc acgaacgaaa ggccggccag cgcgatgctg ccgaccaccg gcacggcaac
     1381 gcgttgcggc gtcgtggtgc cgcgtttgag cgtgatcgcg gcgccgatga cgacgaccag
     1441 cgcgatcgtg cacgacacgt agcggaacag ctccaggtcg tcgagcagct tgggcagcag
     1501 cacgatgatc gtcgctccga gcagcgcgcc cgagcgcgtc ttgcgcccgc ccatgatgac
     1561 ggccagcagg aacagcaccg tcagctcgaa gttgtaggtg ttcggagaaa tgtactgctc
     1621 ggaaaacgcg tagagcgccc cggccaggcc ggcgaggccg gcgctgatca cgaacgcata
     1681 gaccttgtag cggtagaccg agacgcccat gcagtcagaa gccacggggc tgccgcgcag
     1741 ggcctcgaac gcgcggccga gttgcgaacg cagcagccgg tgcacgaaga tcagcgaaag
     1801 caccagcagc acagcgacca gccagaagaa ctcggtctca tcgagccgca cgccgaggag
     1861 ggccggcttg gtgagcttga tgccgagcgg tccttcggtg aggaacgtca tctcgttgat
     1921 gaggatctgg atgatggtgc cgaaggcgag cgtcaccatt gcgagatagg ggccggtcac
     1981 gcgcagggcc ggcagcgcga gcagggcgcc gaagacggcg gtgacgccga tcgcactgat
     2041 caacgtgacg aggagcggcg tcccgagctt catcaccatc acgccggcgg tgtatgcgcc
     2101 gatgccgaag agtccggcgt ggccgagcga gacctggccc gtgtagccga ccacgatgtc
     2161 gagcccgaac agcacgatcg cgtagatcat gatggtctcg agcaggtgga tgtagtacgg
     2221 gttctggatc gcgaccggga agagcgcgag ggccgcgacc gcggcggcgc tgagggccag
     2281 tcgggtgggt cgcatgtggc tagaccttct tgatggcggt cttgccgaag aggccggccg
     2341 gcttgaccgc caggaccacg agcagcagca cgaggccggg cacgtccttg tagcccgtgc
     2401 tgaggtagaa gcccgtcgtc gtttcggcga ttccgaggat gatgccgccg acgatgatgc
     2461 ccatgccgct ggtaagcccg ccgatgatcg cgaccgcgaa tgccttcagc ccgagcacgg
     2521 cgcccatcgt cgcgccagtc agcgtgatgg gcgcgatcag cacgccggcg aacgcggccg
     2581 tgagcgacga cagcgcatac gagaacgtga tgacgaggcc ggtgttgatc cccatcagct
     2641 tggccgcgtc gcggtcgttg aaggtcgcga ccaccgcttt gccgtagatc gagcggcggt
     2701 tgaagatctc gaccgcgagc atcatcagga tcgcgccgac gacgaccagg atctccatcg
     2761 gcagcacgtt ggcgccgagg aaatggagcg gcgactcggg caggggcgaa gggaatttca
     2821 gatcgtcgcg gccccagaca ttctcggcca cgttcttgaa gatgatgccg agtgcgatcg
     2881 tcgacatgat ccagccgaac tcggacttga tcttgatcgc cggccgcacg ccgatgcgtt
     2941 cgaccaccgc cccctgcgcc gcgccgaaca ggcagacgag cggaatcatc agccagtagt
     3001 tcacgccatg attgacgagc gtgagaccga ccatcgcacc cagcatcagc gcatcgccct
     3061 ggccgaaatt gagggtgtcg gaggtggcga acgtgagctg atagccgaac gcgatgacgg
     3121 catagatcat gcccagtgca atgccgctga agacgagctg agtcaggatc tgcatgtcgg
     3181 caaccggaac actcgggcgc ggccgcaagg ctggcccatc gacaaaaggc gccgccgcgg
     3241 gcagtcccgg ggcggcgcca cctgggagtc gcttttactt cttgatggcc agtgcgccct
     3301 tggcgttcac gtccttgacg cgcacctcgg aagccttctt ctgatcgtcg gggtaggcgt
     3361 agaccacgcg ctggcccttg acctcgccga acaccggaat gttgacggtg atcgcatcgt
     3421 ggtcggtctt cgagaacggc ttggtgtagg tcgtcacgac gccttcgacc ggtgtcgcga
     3481 gattctcgag cgcagccttg atcttcggcc cgtcggtgct gcccgcctgc ttgatcgcgg
     3541 ccgccaacag gtacaccgag tcgtaaccct gggccgccga gaccggtgaa tcgatgcggg
     3601 cattcttcgg gttgaaggtc ttgaggtaac tgatgatgaa cgactggcgt ttgggcgtcg
     3661 tcggctcctg gacaaaggtc tgcggcatgc gtgcgccttc gccgccggga ccggcgttgt
     3721 cgatgaagtt ggccatcgac agcgtccagc ttccgatcat cggcaccttc cagccgagct
     3781 tggtcatgcc gttggcgatc tgcgcgagct cggggccgat gccgtaggtc agcaccgctt
     3841 cggcgccggc ctccttggcc ttgagcagct gcgccgtcat gtccacatcc ttgatgttga
     3901 acttctcgac cgcgaccgcc ttgacgcctt tcaacgccag ggccttctcc aggtcttcgc
     3961 ggccgagctg gccgtagttg gtcgagtcgg cgaggatcgc gaccttcttg tagccgcggc
     4021 gggtgatcgc ttcctcgacg atcatcggcg cctggatgct gtcgtgcgcg gcgttgcgaa
     4081 agatgtagtt ctcgggctgg tcgtcgaact ggtgcgtgac gatggacccg gtggccacgt
     4141 tgttcatgac cggaatcttg gcttcctgga agaagcgctg cgaggcgagc gcgacgccgg
     4201 tgttgatgta gccgacgacg gcggcgacct tctccttgtt gatca
//
LOCUS       DASVHM010000752         2460 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_270203, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000752 DASVHM010000000
VERSION     DASVHM010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270203"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1286
                     /locus_tag="VF308_13815"
     CDS             <1..1286
                     /locus_tag="VF308_13815"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEX7437779.1"
                     /translation="HVLDPRAGIDRVLDVLVRGGEIAELGDALVAPEGIEVISATGKH
                     LFPGFVDPHVHLRVPGFEYKEDVESGTRAAAAGGFCLVLAMANTDPPVDNAGVLQSLR
                     MRAAAEAHVPVGFSATVTKGMAGTRLTEMADLADAGAVCFTDDGLPIADAGLMRQALQ
                     YQRLANRVIALHEEDPALTKSGVMHEGSISAALGLAGVPPVSESTMIARDALLAGYEG
                     GRIHVQHLSSAQSVEAVAAAKERGVSISTEATPHHLSLTDEAVGDATDANFKMNPPLR
                     TEADRLALIEGLRDGTIDCIASDHAPHSAHEKEVPFEQAAMGVTGLETSFPVVYSDLV
                     LPGVLPLGLVIERITAGAALFDLPTPTIAVGELANLALIDLDATWTVGEEGYESRSSN
                     SCFAGRTLNGRVLATVAAGVGALRARSCAIQQVEV"
     gene            1283..2455
                     /gene="carA"
                     /locus_tag="VF308_13820"
     CDS             1283..2455
                     /gene="carA"
                     /locus_tag="VF308_13820"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: protein motif:HMM:NF009475.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEX7437780.1"
                     /translation="MSGASRGPVARRDPATRRDPVFLLLEDGSRFDGLAAGATDDVTG
                     EVVFNTAMTGYQEALTDPSYRGQIITYTYPLVGNYGVSEAFMESDAPHARAVVMREVT
                     PSGTPGRQGDWEAWLLERGITGITGVDTRALVRRIRDKGAMRGGIFGANTPENEAREH
                     VHAEPPMSGQDLAREVTPSEPVIFGDGDGPLVVAIDTGIKRSIIDNLRLRGVRLELYP
                     CATPAAELLARDPDFFFLANGPGDPAALDYVVQNVRELIGKKPVFGICLGHQLLCRAI
                     GLDTYKLPFGHRGANHPVKDLATGKIDITAQNHGFAVQTPDGSGKITGDEPVRWDTDF
                     GAAELSHVNLYDYTVEGLMLLDVPGATVQYHPEAGPGPHDALYLFDRFLALAERAA"
BASE COUNT          393 a          862 c          832 g          373 t
ORIGIN      
        1 cccatgtgct cgacccgcgc gccgggatcg accgggtgct cgacgtgctg gtgcgcggcg
       61 gcgagatcgc cgaactcggt gacgcgctcg tcgcgccgga gggaatcgaa gtgatttccg
      121 cgacgggcaa gcatctgttc cccggtttcg tcgatccgca cgtgcatctg cgagtaccgg
      181 gtttcgaata caaggaggac gtcgaaagcg gcacccgcgc cgccgcggcc ggcggcttct
      241 gcctggtgct tgcgatggcc aacaccgacc cgcccgtcga caacgccggc gtgctgcagt
      301 cgctgcgcat gcgcgccgcc gcggaggcac acgttccggt cggcttcagc gcgaccgtca
      361 caaagggcat ggccggaacc cgcctgaccg agatggcgga ccttgccgac gcgggcgcgg
      421 tctgcttcac cgacgacgga ctgccgatcg ccgatgccgg gctgatgcgc caggcacttc
      481 agtaccagcg gctcgcgaat cgcgtgattg ccctgcacga ggaggatcct gcactcacga
      541 aaagcggcgt gatgcatgag ggctcgatct cggccgcact cgggttggcc ggcgtgccgc
      601 cggtctcgga gagcacgatg atcgcccgcg acgcgctgct ggccggctac gagggcgggc
      661 gaatccacgt tcagcatctg tcgagcgcgc aatcagtcga ggccgtcgcg gccgcgaagg
      721 agcgcggcgt atcgatctcg acagaggcca cgccgcacca tctgtcgctg accgacgaag
      781 ccgtcggcga cgccaccgac gcgaatttca agatgaaccc gccgctgcgc accgaggccg
      841 accgcctggc gctgatcgag ggcctgcgcg acggcacgat cgactgcatc gccagcgacc
      901 acgcgccgca ttccgcgcac gagaaggagg tgccgttcga gcaggccgcg atgggtgtga
      961 ccgggctcga aacctcgttc ccggtcgtct acagcgacct ggtgctgccg ggtgtgctgc
     1021 cgctcggcct ggtgatcgag cggatcaccg ccggcgcggc gctgtttgac ctgccaacgc
     1081 cgacgatcgc cgtgggcgag cttgcgaacc ttgcgttgat cgatctcgac gcgacatgga
     1141 ccgtcggcga ggaggggtac gaaagccgtt cttccaactc gtgcttcgcc ggccgcacgc
     1201 tcaatggccg cgtgctcgcg accgtcgccg ccggggtggg cgcgttgcgc gcccgcagct
     1261 gcgcgatcca gcaggtcgag gtatgagcgg cgcttcgcgc ggcccggtcg cgcgacgcga
     1321 cccggccacg cggcgcgacc cggtattcct gttgctcgag gacggctcac gctttgacgg
     1381 tctcgcggcc ggggcgaccg acgacgtcac cggcgaggtc gtcttcaaca ccgcgatgac
     1441 cggctatcag gaggcgctca ccgaccccag ctaccgcggt cagatcatca cctacacgta
     1501 tccgctggtc ggcaattacg gcgtcagcga ggcgttcatg gaatccgacg cgccgcacgc
     1561 gcgcgcggtc gtgatgcgtg aggtcactcc gtcgggcacg cccggacgac agggcgattg
     1621 ggaggcatgg ctgctcgagc ggggtatcac cggcatcacc ggcgtcgata cacgcgccct
     1681 ggtgcgccgc atccgcgaca agggcgcgat gcgcggcggc atcttcggcg cgaacacccc
     1741 cgagaacgag gcccgcgagc acgttcacgc cgaaccgccg atgagcggcc aggatctcgc
     1801 gcgcgaggtg acgccgtccg aaccggtgat cttcggcgac ggcgacggcc cgcttgtcgt
     1861 cgcgatcgac accggcatca agcgctcgat catcgacaac ctgcgcctgc gcggcgtgcg
     1921 gctcgagctg tacccatgcg cgacgcctgc cgccgagctg ctggcgcgcg atccggattt
     1981 cttctttctc gccaacggcc cgggcgaccc cgcggcgctc gactacgtcg tgcaaaacgt
     2041 gcgcgagctg atcggcaaga agccggtctt cggcatctgc ctcggccatc agctgctctg
     2101 ccgcgcgatc ggcctcgata cgtacaagct gccgttcggg caccgtggag ccaatcatcc
     2161 ggtcaaggat ctcgccacgg gcaagatcga catcaccgca cagaaccacg gattcgccgt
     2221 gcaaacgccc gacggcagcg gcaagatcac cggcgacgag ccggtgcgct gggacaccga
     2281 tttcggcgcg gccgagcttt cgcacgtcaa tctctacgac tacaccgtcg aaggcttgat
     2341 gctgctcgac gtacccggcg cgacggtgca gtaccacccg gaggccggcc ccgggccgca
     2401 cgacgcgctt tacttgttcg accgctttct cgcgctcgcc gagcgggccg cctgatgccg
//
LOCUS       DASVHM010000753         3732 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_848461, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000753 DASVHM010000000
VERSION     DASVHM010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3732
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_848461"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1888)
                     /locus_tag="VF308_13825"
     CDS             complement(<1..1888)
                     /locus_tag="VF308_13825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX7437781.1"
                     /translation="MSEISRVALFGKLNPLVYKTVEGATVFCKLRGNPYVELVHWVTQ
                     LLETADSDVQAIVRHYALDQAALARDVTTTLDRLPRGSTAISDFSEHITFAIQQAWVY
                     GTLMFGDSQVRSAYLVLGILNTPSLRNALLGISRQFEKIKAEDLAEQLTTICAKTGES
                     GLGSQDGSIVGAGAPGENSGAMAPAAMGKQEALKKFTIDLTEKARRGEIDPVTGRDEE
                     IRQIVDILMRRRQNNPILTGEAGVGKTAVVEGFAVRLARGDVPPQLQGVSLLTLDIGL
                     LQAGASMKGEFEQRLRQVIDEVQQSPKPIILFIDEIHTLVGAGGAAGTGDAANLLKPA
                     LARGNLRTVGATTWAEYKKYIEKDPALTRRFQVVQVLEPDELKAILMLRGVASVLEKH
                     HRVQLLDEAIESAVKLSHRYIPARQLPDKAVSLLDTACARVAVSQHAIPAEVEDSRRR
                     IESLEIEQAIIDREAVVGVDVGARRTDVDEKLGAERERLAGLEKRWQEEKTIVDRVLA
                     LRAQLRGGDKPVDTPASGEGAVAAQPASGEANAAPAVDRTKLLADLHEEQGKLEALQG
                     DSPLIMPSVDAQAVASVVSDWTGIPVGRMVKNELQAILRLGETLGNRVIGQQHGLDMI
                     ARRIQ"
     gene            complement(1931..3031)
                     /gene="tssG"
                     /locus_tag="VF308_13830"
     CDS             complement(1931..3031)
                     /gene="tssG"
                     /locus_tag="VF308_13830"
                     /inference="COORDINATES: protein motif:HMM:TIGR03347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HEX7437782.1"
                     /translation="MHSPAAPGPATGASATAAEALWTRLETNPEVFDLFQALRRIEGA
                     HPERPRLGDALRPLEEPVRFAQEAALTFAPAAISSLRRGASHPPRLMQRVFGFLGPNG
                     ALPIHLTEYARERQLHHADETFGRFLDTLLHRFGLFFYRAWARAQPVVGLDRADDSAI
                     VRHVGALFGLVEKSARNRDALGDFPKLFFAGRLARSVRDADGLEAWISAQFGVTVVVQ
                     QFCGHWMALGSTERSRLMRDGQAGLGRGAVLGRSVWDVQHKFRIVIGPLAWERFVSLL
                     PGSVRLDMLQAMVRQYVGFEFNWDLRLILERDGVPAWPLGARPGLGQLGRTSWLNGAR
                     GYRRPRDADDLVMNVESIRPFAPRRAAAGVPH"
     gene            complement(3040..>3732)
                     /locus_tag="VF308_13835"
     CDS             complement(3040..>3732)
                     /locus_tag="VF308_13835"
                     /inference="COORDINATES: protein motif:HMM:NF017733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HEX7437783.1"
                     /translation="EPRLASDRMRRDGPRSGYVGTEMFLSLVDPREAPYRQSITQLSA
                     RVRCSNRDLPLFMPVGQSHGELTLKGSAPIEAIQVVAGPSRPHSAMREGGVAWRLLGL
                     LSLNYLSIVDEDAERGASTLREMLGLFAHGADVGLKRQIEGVRSVAVKPVVRRHPIPG
                     PIAFGRGLEVRVTVDDLSFEGGSAVLLGSVLHQYFQRHVSMNSFAQTVLASLTRGPVM
                     TWAPARGARAVL"
BASE COUNT          603 a         1278 c         1265 g          586 t
ORIGIN      
        1 tctggatgcg ccgcgcgatc atgtcgaggc catgctgctg gccgatgacg cggttgccga
       61 gcgtttcgcc gaggcgcagg atcgcctgca actcgttctt gaccatgcgc ccgaccggga
      121 tgccggtcca gtcggagacg acgctcgcca ccgcctgcgc atccaccgag ggcatgatga
      181 gcggcgagtc gccctgcagc gcttcgagct tgccctgttc ttcatgcaga tcggcgagaa
      241 gcttcgtgcg atcgacggca ggcgccgcat tcgcctcgcc gctcgcaggc tgcgcagcaa
      301 cggcgccctc gcccgaggcc ggcgtgtcga ccggcttgtc gccgccgcgc agctgcgcgc
      361 gcagcgcgag cacccgatca acgatggtct tctcttcctg ccagcgtttc tcgaggccgg
      421 caaggcgttc gcgctcggcg ccgagcttct cgtcgacatc ggtccgccgc gcccccacat
      481 cgacgccgac cacggcttcg cggtcgatga tggcttgctc gatttcgagc gattcgatgc
      541 gccggcggct gtcctcgacc tcggccggaa ttgcgtgctg gctcaccgcg acgcgcgcgc
      601 atgccgtgtc gagcaggctc accgccttgt cgggcagctg gcgcgccgga atgtagcgat
      661 gcgagagctt gaccgccgat tcgatcgcct cgtcgagcag ctgcacgcga tggtgtttct
      721 cgagcacgct ggcaacgccg cgcagcatca ggatcgcctt cagctcgtcc ggctcgagca
      781 cctgcacgac ttgaaagcgc cgcgtcagcg ccggatcctt ctcgatgtac ttcttgtact
      841 cggcccaggt cgtcgccccg accgtgcgca ggttgccgcg cgcgagcgcg ggcttgagca
      901 ggttggcagc gtcgccggta cccgcagcac cgccggcgcc gaccagcgtg tggatctcgt
      961 cgatgaacag gatgatcggc ttcgggctct gctgcacctc gtcgatcacc tggcgcaggc
     1021 gctgctcgaa ttcacccttc atcgaggcgc cggcctggag gaggccgatg tcgagcgtga
     1081 ggagcgagac accttgcaac tgcggcggca cgtcgccccg cgccagccgc acggcgaaac
     1141 cttcgaccac agccgtcttg ccgacgccgg cctcgccggt cagaatcggg ttgttctgcc
     1201 ggcggcgcat caggatgtcg acgatctggc ggatctcctc gtcgcgcccg gtcaccggat
     1261 cgatctcgcc tcttcttgcc ttctcggtca ggtcgatcgt gaacttcttg agcgcttctt
     1321 gcttgcccat cgcggcgggg gccatcgcac ccgagttctc gcccggcgcg ccagcgccga
     1381 cgatgctgcc gtcctgcgaa ccgaggccgg attcgccggt cttcgcgcag atcgtcgtca
     1441 actgctcggc gagatcctcg gccttgatct tctcgaactg gcgcgagatg ccgagcagcg
     1501 cattgcgcag gctcggcgtg ttgaggatgc cgagaacaag gtaggcgctg cgcacctgcg
     1561 aatcgccgaa catcagcgtg ccgtagaccc aggcttgctg gatcgcgaag gtgatgtgct
     1621 cggagaaatc cgaaatcgcg gtcgagccgc gcggcaggcg gtcgagcgtg gtggtcacgt
     1681 cgcgggcgag ggcggcctgg tcgagcgcgt agtgacggac gatcgcctgc acgtcggaat
     1741 cggccgtctc gagcaattgc gtcacccagt ggacgagttc gacatacggg ttgccgcgca
     1801 gcttgcagaa cacggtggca ccctcgacag tcttgtagac gagcgggttg agcttgccga
     1861 acagggccac acgactgatc tcactcattg ccatctccct tgcgtattga acagaaccat
     1921 ccctgtggtt tcagtgagga acgccggcgg cggcgcgcct tggcgcgaac ggccggatgc
     1981 tctcgacatt catcaccaga tcgtcggcat cgcgcgggcg ccggtagccg cgcgcaccgt
     2041 tgagccacga ggtgcgtccg agctggccaa gtccggggcg cgcgccgagc ggccaggccg
     2101 gcacgccatc acgctcgagt atgaggcgca gatcccagtt gaactcgaag ccgacgtact
     2161 ggcgcaccat cgcctgcagc atgtcgagac gaacgctgcc cggcaagagg gacacgaagc
     2221 gctcccacgc cagcggtccg atgacgatgc gaaacttgtg ctgcacgtcc cagaccgaac
     2281 gcccgagcac ggcgccgcgg ccgagccccg cctggccgtc gcgcatcagg cgcgaacgct
     2341 cggtgctgcc gagcgccatc caatggccgc agaactgctg gaccacgaca gtgacgccga
     2401 actgcgcact gatccaggcc tcgagaccgt ccgcatcgcg caccgatcgc gccagccggc
     2461 cggcgaagaa cagcttcgga aagtcgccca gtgcatcgcg gttgcgcgcc gatttttcga
     2521 ccagtccgaa gagcgcaccg acatggcgaa cgatcgccga gtcgtcggcc cggtcgaggc
     2581 cgacgaccgg ctgcgcccgc gcccaggctc ggtagaagaa gaggccgaac cgatgcagca
     2641 acgtgtcgag aaagcgcccg aaggtttcgt cggcatggtg cagctggcgc tcgcgcgcgt
     2701 actcggtcag atggatcggc agggcgccgt tcggaccgag gaatccgaac acgcgttgca
     2761 tcaggcgtgg cggatgcgaa gcgccacgcc gcagggacga gatcgcagct ggggcgaagg
     2821 tcagggccgc ctcctgcgcg aagcgcacgg gctcttcgag cggccgcagc gcatcgccga
     2881 ggcgcggacg ctccgggtgc gcgccctcaa tgcgtcgcaa ggcctggaac agatcgaaca
     2941 cctcggggtt cgtctcgagg cgggtccaca gggcctcggc ggccgtggcg ctcgccccgg
     3001 tcgcgggtcc gggggcagca ggagaatgca cgcgcgcgtt cacagcacgg ccctcgcgcc
     3061 ccgtgccggc gcccaggtca tcaccgggcc tcgcgtgagc gaggcgagca ccgtctgggc
     3121 gaacgaattc atcgacacgt ggcgctggaa atactggtgc agcaccgagc ccagcaacac
     3181 cgcgctgcct ccttcgaacg acaggtcgtc gaccgtgacg cgcacttcga ggccgcggcc
     3241 gaacgcaatc ggccccggga tcggatggcg gcgcacgacc ggcttgacgg cgaccgaacg
     3301 cacgccctcg atctgacgct tcagcccgac atcggcgcca tgggcgaaga gaccaagcat
     3361 ttcgcgcagt gtcgaggcgc cgcgctcggc gtcttcgtcg acgatggaca gatagttcag
     3421 cgacagaagg ccgagcaggc gccaggcgac gccgccttcg cgcatcgcgc tgtgcggccg
     3481 tgatgggccg gcgaccacct ggatcgcttc gatcggcgcg ctgcctttga gggtgagctc
     3541 gccgtggctc tggccgaccg gcatgaacag cggcaggtcc cgattgctgc agcgcacgcg
     3601 cgccgagagc tgcgtgatcg actggcggta cggtgcttcg cgcgggtcga ccagcgacag
     3661 gaacatctcg gtgccgacgt accccgaacg cgggccgtcg cggcgcatgc ggtcggaggc
     3721 cagccgtggc tc
//
LOCUS       DASVHM010000754         2049 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1423940, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000754 DASVHM010000000
VERSION     DASVHM010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1423940"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1739
                     /locus_tag="VF308_13840"
     CDS             <1..1739
                     /locus_tag="VF308_13840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX7437784.1"
                     /translation="YVLISDITKHRQDEQALRESEERLAKFMQATAEGIVFHKDGVIV
                     DANPPLCELMGYSLDELLGHRTTEFTASDHLAKVAAVIASGQETTYESVILDKGHQRI
                     PVEFIVRTMVRNGESMRMTIVRDIRDRYAAQARIHHMAHHDALTGLPNRMSFMNQLEH
                     SMLAARAEGSRLALLFVDLDHFKRVNDSLGHVVGDTLLRTVAARIVSALRATDVVARF
                     GGDEFMVLVPGLPGDSERRDDVEQVAHKLIAVIEAPVHVERRPLSVTPSIGIALYPGD
                     GETPTELIEHADSAMYRAKARGRANYQFFDPVMATSAYAALVMEGELAHALERGEFEL
                     YFQPQVRAHDGSLVGAEALIRWNHPERGLLLPDEFIPIAEQRRLMLPIGQWVLKEAAR
                     CAARWYAMGLAVAPVAVNLSTVQFHSIGFIDAVAQVLPRDGDGVGFGLLELELTERML
                     MDDLPEVKQRLMRLKALGLRISVDDFGTGYSSLGHLKELPIDKVKIDRSFIHDLPANR
                     DSGAITRAIIQMGRSLDITVIAEGVETEAQSRFLSGLGCDELQGNWVSPPLALPQFEA
                     WVVARRAASAGR"
     gene            complement(1762..>2049)
                     /locus_tag="VF308_13845"
     CDS             complement(1762..>2049)
                     /locus_tag="VF308_13845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DapH/DapD/GlmU-related protein"
                     /protein_id="HEX7437785.1"
                     /translation="ANHLAYLGDAQVGERVNFGAGSITANYDGARKHRTTIGADAHVG
                     SNCVLVAPVEIGAGATIGGGSTITKDAPAGKLTLARARQATLGAWKRPTKA"
BASE COUNT          308 a          697 c          704 g          340 t
ORIGIN      
        1 cctatgtgct gatttccgac atcacgaagc accgccagga cgagcaggcg ctgcgcgaat
       61 cggaggagcg gctcgcgaaa ttcatgcagg ccaccgccga gggcatcgtc tttcacaagg
      121 atggcgtgat cgtcgacgcg aacccgccgc tctgcgaact gatgggctac agcctggacg
      181 agctgctcgg ccacaggacg accgaattca ccgcgtccga ccacctggcc aaggtggcgg
      241 cggtcatcgc ttcgggccag gagacgacct acgaaagcgt cattctcgac aagggccatc
      301 agcgcatccc cgtcgagttc atcgttcgca cgatggttcg caacggcgaa tcgatgcgca
      361 tgacgatcgt gcgcgacatc cgcgaccggt atgcggcgca ggcgcgcatc caccacatgg
      421 cgcaccacga cgcgctgacc ggcctgccca accgcatgtc gttcatgaat cagctcgagc
      481 attcgatgct cgcggcgcgg gccgagggtt cgcggctggc gctcctcttc gtcgacctgg
      541 accacttcaa gcgtgtcaac gattcgctcg gccacgtcgt cggcgatacg ctgctgcgca
      601 ctgtcgcggc ccgtatcgtc agtgcgttgc gtgccaccga tgtggtggcg cgcttcggcg
      661 gcgacgaatt catggtcctc gtgcccggcc tgccgggcga ctccgaacgg cgcgacgatg
      721 tcgagcaggt cgcgcacaag ctgatcgcgg tgatcgaggc gccggtccac gtcgagcggc
      781 ggccgctctc ggtgacgccg tcgatcggga tcgcactcta tcccggcgac ggtgagaccc
      841 cgaccgagct gatcgagcat gccgattcgg cgatgtaccg cgccaaggcg cgcggccgcg
      901 ccaactacca gttcttcgac ccggtcatgg cgacctcggc gtacgccgcg ctggtgatgg
      961 aaggcgagct cgcgcacgcg ctcgagcgcg gcgagttcga gctctacttc cagccccagg
     1021 tgcgcgcgca cgacggcagc ctcgtcggcg ccgaggccct gatccgctgg aaccatccgg
     1081 agcgcggcct gctgctgccc gacgagttca tcccgatcgc cgagcagcgc cggttgatgc
     1141 tgccgatcgg gcaatgggtc ctgaaggagg ccgcccgttg cgcggcgcgc tggtatgcga
     1201 tgggcctcgc agtcgcgccg gtcgcggtca acctgtcgac ggtgcagttc cactcgatcg
     1261 gcttcatcga cgcggtggcg caggtgctgc cgcgcgacgg cgacggcgtc ggcttcggcc
     1321 tgctcgagct cgagctcacc gagcgcatgc tgatggacga tctgcccgag gtgaagcagc
     1381 gcttgatgcg cctgaaggcg ctcggcctgc gcatctccgt cgacgacttc ggcaccggct
     1441 actcgtcgct cggccatctg aaggaattgc cgatcgacaa ggtcaagatc gatcgctcgt
     1501 tcatccacga cctgccggcc aaccgcgact cgggcgcgat cacgcgtgcc atcatccaga
     1561 tgggtcgcag cctcgacatc acggtcatcg ccgagggcgt cgaaaccgag gcgcagagcc
     1621 ggttcctgtc ggggctcggc tgcgatgagc tgcagggcaa ttgggtcagt ccgccgctgg
     1681 cgctgccgca attcgaggcc tgggtggtcg cgcggcgcgc cgcttcggcc gggcgttgac
     1741 aggcgatcgg cgccgcgtcg ttcacgcctt cgtcggccgc ttccaggcgc cgagcgtcgc
     1801 ctggcgcgca cgcgcgagcg tgagcttgcc ggcgggcgcg tccttcgtga tcgtcgagcc
     1861 gccgccgatc gtcgcgccgg cgccgatctc caccggggcg acgaggacgc agttgctgcc
     1921 gacgtgggcg tcggcaccga tcgtggtgcg gtgcttgcgg gcgccgtcgt agttcgcggt
     1981 gatgctgccg gcgccgaaat tcacgcgctc gccgacctgg gcatcgccga ggtaggcgag
     2041 gtggttggc
//
LOCUS       DASVHM010000755         5801 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1355997, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000755 DASVHM010000000
VERSION     DASVHM010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5801
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1355997"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..911)
                     /locus_tag="VF308_13850"
     CDS             complement(<1..911)
                     /locus_tag="VF308_13850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilM"
                     /protein_id="HEX7437786.1"
                     /translation="MSFLDTLLGRKHPPMIGLDISSSSVKLVELGQTGSGEYVLERFG
                     SESFEKGWISDGQIEKFDEVAEAVKRLVTKSGTRTRQVVMAMPQSAVITKKIMLPAGL
                     REEELEVQVETEANQYIPFSLDEVSLDFCVIGPSPTSVGDVEVLIAASRKDRVQDRQG
                     LAEAAGLKPAVLDIESHASRLAMSRVVSSLPNEGRDALVALFEIGADTTSLKVLRDDE
                     MLYDRDQAFGGSQLTQLISRQYGFSYEEAEQKKLAADLPDDYETSLLAPFVDSLSQEI
                     GRALQYFFTSTPHHKVHYVMLAGGTATL"
     gene            1257..3557
                     /locus_tag="VF308_13855"
     CDS             1257..3557
                     /locus_tag="VF308_13855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEX7437787.1"
                     /translation="MIVRIVVTLLGLAASAALAVVLIAAIALAVSYPNLPEIDSLTDY
                     RPKLPMRVFSADGVLLGEFGEERRNFVPIAQIPKVMQDAVLAVEDARFYKHSGVDYVG
                     ALRAGLANFGEGHSAQGASTITMQVARNFYLSTEKTFTRKIYEMLLSLKIESLLSKEQ
                     ILEVYMNHIALGQRAYGFASASEIYFGKPLKDITVAEAAMLAGLPKAPSANNPIVNPE
                     RATRRQRYVIDRMLDNGFITVAERDAALKQVLKYRAPSEVAVHAEYVAEQARQMIFNQ
                     YGAEAYTRGLNVYLTLNSAEQTLAYHALRKGIMDYEKRQVYRGPEDYIDLPADRSELD
                     ARIAEALQDFPDNDELRAAVVTEASAKKVVAVLQNGEAVTITGDGLKPATSALSPKAN
                     PKTQIRTGAVVRLIRGAKGDWSITQLPEVEGGFVAMDPRTGSVRAMVGGFDYSKSKFN
                     HVTQAWRQPGSSFKPFIYSAALEKGFTPATVINDAPLFFDAGTTGSQPWEPKNYDGTY
                     DGPMSMRRGLAKSKNMISIRILKSIGPAYAQQWIKRFGFDADKHPAYLPMALGAGAVT
                     PLQMASAYSVFANGGYRINPLLISRITDSKGHIINEARVPTLDESARTIDARNAFIMT
                     SLLQEVTRSGTAAKAQAQLKRPDVFGKTGTTNDSHDAWFAGWQKNIVAVVWMGYDDPK
                     KLGDRETGGGLSLPIWIDYMTTMLKGVPVQEPSAPEGVVNLGGEWYYEEYARGAGVSS
                     VGLEDKAAPTPPSDEERNGILDLFRR"
     gene            complement(3573..3932)
                     /gene="cyaY"
                     /locus_tag="VF308_13860"
     CDS             complement(3573..3932)
                     /gene="cyaY"
                     /locus_tag="VF308_13860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HEX7437788.1"
                     /translation="MSTVPAKAEPLSAADYEARTRAVLAAIEATADRFLQEDVIDIDA
                     SRTGGLLELAFPNGSKIVVNTQPPLQELWLAAQSGGFHFRSVEGRWIDGRDGREFFAV
                     LSACASAQAGRPLRFEP"
     gene            3951..4157
                     /locus_tag="VF308_13865"
     CDS             3951..4157
                     /locus_tag="VF308_13865"
                     /inference="COORDINATES: protein motif:HMM:NF025012.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEX7437789.1"
                     /translation="MTRRAGSVVATAARAIVAAAVTALLAACGQKGALVLAKPAPSAV
                     APAVPSSATTVVPSALPTSAPASR"
     gene            4157..5446
                     /gene="lysA"
                     /locus_tag="VF308_13870"
     CDS             4157..5446
                     /gene="lysA"
                     /locus_tag="VF308_13870"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEX7437790.1"
                     /translation="MDLPGAPDITLREGRLMVEGVAAVDLARRFKTPLYVYSSAVMAH
                     ALASYQNALAGRDHLLCYAVKANSALAVLQWFARRGCGFDIVSGGELERVLAAGGDPQ
                     RIVFSGVGKTRAEMERALAVDVLCFNVESIGELELLSEVASGTGRRARVSLRVNPDVD
                     AKTHPYISTGLRANKFGIAHEDAPAAFARASRLPGIEVAGIDCHIGSQIVDADPYVDA
                     LDRLLDLVERVEADGVPLAHIDVGGGLGITYRDETPPDAGALVARLLERIDARGHGHR
                     KIVFEPGRSLVGNAGVLVTEVLYLKPGSERNFCIVDAAMNDLMRPAMYGAWMRIVECA
                     PAQAAAVTWDVVGPICESGDWLGRERTLAVAPGDFVAVLSAGAYAMSMASNYNTRPRA
                     AEVMVSGSEAVLIRERESLADLTRGEHLLGDDARAPA"
     gene            complement(5450..>5801)
                     /locus_tag="VF308_13875"
     CDS             complement(5450..>5801)
                     /locus_tag="VF308_13875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011483041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HEX7437791.1"
                     /translation="YLFISHNLAVVRHVSDEVGVMYLGRIVELADKALLFTRPRHPYT
                     RMLLDAIPDIHMSGRSRTPVQGEVPNPLNPPSGCTFNPRCPHANERCRIERPELLAID
                     GVRVACHAVEERRI"
BASE COUNT          960 a         2003 c         1936 g          902 t
ORIGIN      
        1 agcgtcgccg tgccgccggc cagcatcacg tagtggacct tgtgatgcgg cgtgctggtg
       61 aagaagtact ggagcgcccg gccgatttcc tgcgacaggc tgtcgacgaa gggcgcgagc
      121 agcgaggtct cgtagtcgtc gggcaggtcg gcggcgagct tcttctgctc ggcctcctcg
      181 taggagaagc cgtactggcg cgagatgagc tgggtgagct gcgagccgcc gaaggcctgg
      241 tcgcggtcgt agagcatctc gtcgtcgcgc agcaccttga ggctggtggt gtcggcgccg
      301 atctcgaaca gggcgaccag cgcatcgcgg ccctcattgg gcaagcttga gacgacccgg
      361 ctcatcgcca ggcgcgaggc gtgcgattcg atgtcgagca ccgcgggctt gaggccggcc
      421 gcttcggcca ggccctggcg gtcctggacg cggtccttgc gcgacgcggc gatcagcacc
      481 tcgacgtcgc cgaccgaggt cgggctcggg ccgatgacgc agaagtcgag gctcacctcg
      541 tcgagcgaga acgggatgta ctggttggct tcggtctcga cctggacctc gagctcttct
      601 tcgcgcagac ccgcgggcag catgatcttc ttggtgatca ccgccgactg cggcatcgcc
      661 atgacgacct ggcgcgtgcg cgtgccgctt ttcgtgacca gccgcttgac cgcctcggcg
      721 acttcgtcga acttttcgat ctgaccgtcg gaaatccagc ctttctcgaa actttcggag
      781 ccgaatcgct ccaacacgta ctccccgctt ccggtctggc cgagctcgac gagcttgacg
      841 ctggaagagc tgatgtcgag gccgatcatc ggtgggtgct tgcggcccaa cagcgtgtcg
      901 agaaagctca cggtgcccct tttccagcgt cgaaaacgag cgcgctggag tgttaataag
      961 ttactttgat gctagcagta aagcccttga attccaaaga caaacccggg gccgccgccc
     1021 cgtgcgcgtt gcaaatctca cacgcaaagg ctcggcaaga tgcgtcttct tgcaacgcgt
     1081 tttcgaactg tccattgcgt cactgatccg gcccaccgac attcctccga aagggaccga
     1141 ggaccgggtt tctataatgc gatcgccctt actggacgcg tgtgacagat tccgattccc
     1201 cggctgaccg cgagacccga tcgcgcccgc ccgaccggtg gccgacatgg ctgcgcgtga
     1261 tcgtccggat cgtcgtcacc ctgctcggac tggcagcatc ggcggcgctc gcggtcgtgc
     1321 tgatcgccgc catcgcgctg gcggtctcct acccgaacct gcccgagatc gacagcctca
     1381 ccgactatcg tccgaagctg ccgatgcgag tcttctcggc cgacggcgtt ctcctcggtg
     1441 aattcggcga ggagcggcgc aacttcgtgc cgatcgcgca gatccccaag gtcatgcagg
     1501 acgcggtcct cgccgtcgag gacgcgcgct tctacaagca cagtggcgtc gactacgtcg
     1561 gcgcccttcg cgccggtctc gccaacttcg gcgaaggcca cagcgcacag ggcgcttcga
     1621 cgatcacgat gcaggtcgcg cgcaatttct atctctcgac cgagaaaaca tttactcgca
     1681 agatctacga gatgttgctt tctttgaaga tcgaaagcct gctcagcaag gaacagattc
     1741 tcgaggtcta catgaaccat atcgcgctcg gccagcgcgc ctacgggttc gcgtcggcca
     1801 gcgagatcta tttcggcaag ccgctgaagg acatcacggt cgccgaggcg gcgatgctcg
     1861 cgggcctgcc caaggcgccc tcggcgaaca acccgatcgt caatccggaa cgcgccacgc
     1921 ggcgccagcg ctacgtcatc gatcgcatgc tcgataacgg cttcatcacc gtcgccgagc
     1981 gcgacgcggc cctgaagcag gtcctgaagt accgcgcccc gtcggaagtg gcggtacacg
     2041 ccgagtacgt ggccgagcag gcgcgccaga tgatcttcaa ccagtacggc gccgaggcct
     2101 acacgcgcgg cctcaacgtc tacctcacgc tcaactcggc cgagcagact ctcgcctacc
     2161 acgccctgag gaagggcatc atggactacg agaagcgaca ggtctatcgc gggcccgagg
     2221 actacatcga cctgccggcc gaccgcagcg agctcgacgc gcgcatcgcc gaagcgctgc
     2281 aggacttccc cgacaacgac gagctgcgcg ctgcggtcgt gaccgaggcg tcggcgaaga
     2341 aggtcgtcgc cgtgctgcag aacggcgagg cggtgacgat caccggcgac ggcctgaagc
     2401 cggccacatc ggcgctctcg cccaaggcca acccgaagac gcagattcgc accggcgcgg
     2461 tcgtccgtct catccgcggc gccaagggcg attggtcgat cacgcagctg cccgaggtcg
     2521 aaggcggctt cgtcgcgatg gacccgcgca ccggcagcgt tcgcgccatg gtcggcggct
     2581 tcgactactc gaagagcaag ttcaaccacg tcacccaggc ctggcgccag cccggttcga
     2641 gcttcaagcc cttcatctac tcggcggcgc tggaaaaggg cttcacgccg gcgacggtga
     2701 tcaacgacgc gccgctcttc ttcgacgccg gcacgacagg cagccagccc tgggagccga
     2761 agaactacga cggcacctac gacggcccga tgtcgatgcg gcgcggcctc gccaagtcga
     2821 agaacatgat ctcgatccgc atcctcaagt cgatcgggcc ggcttacgcg cagcagtgga
     2881 tcaagcgctt cggcttcgac gccgacaagc accccgcgta cctgccgatg gcgctcggcg
     2941 ccggcgccgt cacgccgctg cagatggcgt cggcgtacag cgtcttcgcc aacggcggct
     3001 accgcatcaa cccgctgctc atcagccgca tcaccgacag caagggccac atcatcaacg
     3061 aggcgcgcgt tccgacgctc gacgagtcgg cgcggacgat cgacgcgcgc aacgccttca
     3121 tcatgaccag cctgctgcag gaagtcaccc gctcgggcac ggcggcgaag gcgcaggcgc
     3181 agctcaagcg ccccgacgtt ttcggcaaga ccggcaccac caacgactcg cacgacgcct
     3241 ggttcgcggg ctggcagaag aacatcgtcg ccgtcgtctg gatgggctac gacgacccga
     3301 agaagctcgg cgaccgcgag accggcggcg gcctctcgct gccgatctgg atcgactaca
     3361 tgacgacgat gttgaagggc gtcccggtgc aggagcccag cgcgcccgag ggcgtcgtca
     3421 acctcggcgg cgagtggtac tacgaggagt acgcgcgcgg cgccggcgtg agcagcgtcg
     3481 gcctcgagga caaggcggcg ccgacgccgc cgagcgacga ggagcgcaac ggcatcctcg
     3541 acctgttccg ccgctgacgt cgcggcgcgc ggtcagggct cgaagcgaag cggccgtccc
     3601 gcctgcgcgc tcgcgcaggc cgacaggacg gcaaagaact cgcggccatc gcgtccgtcg
     3661 atccagcggc cttcgaccga gcggaaatga aagccgccgg actgcgccgc cagccacagc
     3721 tcctggagcg gcggctgggt gttgacgacg atcttgctgc cgttcggaaa ggcgagctcg
     3781 agcaggccgc cggtgcggct ggcgtcgatg tcgatgacgt cttcctgcag gaagcgatcg
     3841 gccgtggcct cgatcgcggc gagcaccgcc cgcgtccgcg cttcgtagtc ggcagcggag
     3901 agaggctcgg ctttggcggg aacagtgctc acggtcgata aaatcggcga atgacaagac
     3961 gcgctggcag tgtagtggcg acggctgcgc gggcgatcgt cgccgcggcc gtcacggcct
     4021 tgcttgcggc atgcggccag aaaggcgccc tcgttctcgc caagccggcg ccgtcggcgg
     4081 tcgcgccggc cgtaccttcc tcggcgacga cagtcgtccc ctcggcgttg ccaacgtcgg
     4141 caccggcgtc gcgctgatgg acctccccgg cgcgcccgac atcacgctgc gcgagggccg
     4201 cctcatggtc gagggcgtcg ccgccgtcga cctcgcgcgc cgcttcaaga cgccgctcta
     4261 cgtctactcg agcgcggtca tggcgcacgc gctcgcctcg taccagaacg cgctcgccgg
     4321 ccgcgaccac ctcctctgct acgcggtcaa ggccaactcg gcgctggcgg tgctgcagtg
     4381 gttcgcgcgc cgcggctgcg gcttcgacat cgtttccggc ggcgagctcg agcgcgtcct
     4441 cgccgccggc ggcgacccgc agcggatcgt cttctccggc gtcggcaaga cgcgcgccga
     4501 gatggagcgc gcgctcgcgg tcgacgtcct ctgcttcaac gtcgaaagca tcggcgagct
     4561 cgagctgctg agcgaggtgg caagcggcac cggccggcgc gcgcgcgtca gcctgcgcgt
     4621 caatcccgac gtcgacgcca agacgcaccc gtacatctcg accgggctgc gcgcgaacaa
     4681 gttcggcatc gcccacgagg acgcgccggc cgcgttcgcg cgcgcgtcgc gcctgccggg
     4741 gatcgaggtg gccggaatcg actgccacat cggctcgcag atcgtcgacg ccgatccgta
     4801 cgtcgacgcg ctcgatcgcc tcctcgacct ggtcgagcgc gtcgaggccg acggcgtgcc
     4861 gctcgcgcac atcgacgtcg gcggcggcct cggcatcacc taccgcgacg agacgccgcc
     4921 cgatgccggc gccctggtcg ctcgcctgct cgagcgcatc gacgcgcgcg gccacggcca
     4981 tcgcaagatc gtcttcgagc cgggccgctc gctggtcggc aacgccggcg tgctcgtcac
     5041 cgaagtgctc tacctcaagc ccggcagcga gcgcaatttc tgcatcgtcg acgcggcgat
     5101 gaacgacctg atgcggccgg cgatgtacgg cgcgtggatg cgaatcgtcg aatgcgcgcc
     5161 tgcccaggcg gccgcggtga cctgggacgt cgtcgggccc atctgcgaat cgggcgactg
     5221 gctcggccgc gagcgaacgc tcgccgtcgc gcccggcgat ttcgtcgccg tcctctccgc
     5281 cggcgcctat gcgatgagca tggcgagcaa ctacaacacg cggccgcgcg ccgccgaggt
     5341 gatggtgtcg ggcagcgagg ccgtgctcat ccgcgagcgc gagtcgctcg ccgacctgac
     5401 gcggggcgag catctgctcg gcgacgacgc gcgggcgccg gcctgacccc tagatccgcc
     5461 gctcctcgac cgcgtggcag gcgacccgga cgccgtcgat cgcaagcagc tcgggacgct
     5521 cgatgcggca gcgctcgttg gcgtgcgggc agcgtggatt gaaggtgcag ccggacggcg
     5581 ggttgagcgg gttcggcacc tcgccctgca ccggcgtgcg cgatcggccg ctcatgtgga
     5641 tgtcggggat cgcgtcgagg agcatgcgcg tgtaggggtg gcgcggacgc gtgaagagca
     5701 gcgccttgtc ggccagctcg acgatccggc cgaggtacat cacgccgacc tcgtcgctga
     5761 cgtggcggac gaccgctagg ttgtgcgaga tgaagaggta c
//
LOCUS       DASVHM010000756         9044 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_270701, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000756 DASVHM010000000
VERSION     DASVHM010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 9044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9044
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270701"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1773
                     /gene="dnaE"
                     /locus_tag="VF308_13880"
     CDS             <1..1773
                     /gene="dnaE"
                     /locus_tag="VF308_13880"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEX7437792.1"
                     /translation="LAKDLIVANHPERAGFSYEALPLDDPAVYRLFSEGRTESVFQFE
                     SAGMRRMLRDAKPSRLEDLFALNAMFRPGPMDNIPRFCARKHGREEVSYPHPLLEAVL
                     GETYGIMVYQEQVMQAAQVLGGYSLGGADLLRRAMGKKKPEEMAQHREIFRRGAAQKG
                     ITPVVADEVFDLMEKFAGYGFNKSHAAAYSLLAYQTAWIKVHFTAEFFAANMTVELDD
                     TDKLKVLCADAKTFGIVLEPPDVNRGVYRFEPVGAKALRYGLGAVKGTGHGAIEAIVA
                     AREGSSGGTAGPFRSLFDFCARVDRQRINRRVVEALVKAGAFDALHPDRASALASVGR
                     ALDWADTQAAHVDQGGLFDFGDSHAASTQEPTLVPAEPWSIKERLTFEKAALGFYLSG
                     HLFDQSADEIRRFVKMRIADLLDSREPQLLAGIVNDLRIVNGQRGRVAIFKLDDTSES
                     IEAVVGEDVLGANKDLLKDDELIVVQGRAQPDRFSGGMRLNVLQVWDLAAARCRFGKY
                     LRVEVNGSIPPVAEVLRDFPSRRIPSEQGDLARGLTVRLRVLRERASAELDLGDSARF
                     YPSDAAIERWRAGAHQGRATVVYE"
     gene            1787..3025
                     /locus_tag="VF308_13885"
     CDS             1787..3025
                     /locus_tag="VF308_13885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX7437793.1"
                     /translation="MSVSTPITGLVLTGGGARAAYQVGVLKALAQIRRECAFTPVNPF
                     PVLAGTSAGAINAAALACRADDFDGAVDVLCQVWENFSAEQVYRSDSIGVIRTGARWL
                     TMMSIGWVIARWRRARPRSLLDNKPLEALLHRLFSTERLHQVMRSGHLRALAVTASSY
                     GSGLHVTFYDAVTDILPWTRSQRLAVRDSISVAHLIASSAIPFVFPAVPLSIDGHVEY
                     CGDGSMRQAAPISPAVHLGAERILVVGAGRMHEPPGQRAGSSEYPNLAQIAGHALSNI
                     FLDALAVDVERLQRINATLALLTPRARASTSLKPIEVLVIAPSERLDDIAAKHLGSLP
                     LPIRAMLRGVGVSGEGDDARGAALASYLLFEAPYTRELMALGVIDTIARRDAVVAFFG
                     WGRALEPDTVPGEAGELRIE"
     gene            complement(3064..3621)
                     /locus_tag="VF308_13890"
     CDS             complement(3064..3621)
                     /locus_tag="VF308_13890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEX7437794.1"
                     /translation="MIKKLFAAILALLAAAAFAAVDVNKATQADLESIKGIGPVIATK
                     ILDERKKASFKDWDDMVTRVKGVGEHNAAKFSADGLTVNGAAYAGAPAAAKKEGKSTM
                     KAASKANEPVTPAPAADSARTAAPTDATRKAQAKERAAARAAEDAEIAKQKAKEKADE
                     KAAKKAKAASEATPAKTAASAPAKK"
     gene            complement(3730..4722)
                     /gene="rfaD"
                     /locus_tag="VF308_13895"
     CDS             complement(3730..4722)
                     /gene="rfaD"
                     /locus_tag="VF308_13895"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009904403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008712 - ADP-glyceromanno-heptose
                     6-epimerase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HEX7437795.1"
                     /translation="MRIVVTGAAGMIGSNLVHGLNAIGVDDVIAVDDLTDGPKYRNLL
                     GARLSDYFDKSDFYGRFARGELGKVDAVLHQGACSDTMEHNGRFMLDNNYRCSKDLLD
                     ACLAQGTRLLYASSAAVYGGSASFREEPGFEQPLNVYGYSKLLFDNVVRRALPAAKTQ
                     VAGFRYFNVYGPREQHKGRMASVAFHHHQQYTQNGKVSLFGEYGGHGPGLQMRDFVFV
                     GDVVAVNLWFLQHPQASGIFNLGSGRAQPFNDVAVATVNAVRVSRGEPALDLDDLVAR
                     GLVEYIPFPEALVGRYQCFTEADLSRLRAIGCDHAFADVASGVRDYVGWLGGRP"
     gene            complement(4733..5668)
                     /gene="rfaE1"
                     /locus_tag="VF308_13900"
     CDS             complement(4733..5668)
                     /gene="rfaE1"
                     /locus_tag="VF308_13900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006297149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HEX7437796.1"
                     /translation="MRTHPSRKRLARARILVVGDAMLDRYWFGAVDRISPKAPVPVVR
                     VTREEERLGGAANVALNVQTLGARATLLTVVGSDDAAGRLRRLLEQHGVAALLGSDPQ
                     LYTIVKLRVIGRAQQLLRVDFENQPDHEVLTSMLGDYERALPDHDAVLFSDYGKGGLT
                     HIPRMIALAREHGKAVLVDPKGSDYSRYAGATVITPNRVELAQVIGAWHSEAQLELET
                     QALRRRFDLGGVVLTRSEEGMSLFDAAGQARVPAQAREVFDVTGAGDTVIATLAAMLA
                     CGLELREAMPIANRAGGIVVGKFGTASVTYEELFA"
     gene            complement(5668..6819)
                     /gene="lapB"
                     /locus_tag="VF308_13905"
     CDS             complement(5668..6819)
                     /gene="lapB"
                     /locus_tag="VF308_13905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017404725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0008653 - lipopolysaccharide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HEX7437797.1"
                     /translation="MDFDLQWLLWGLPVAFALGRFASRIDVRQWRREQKDSPKVYYKG
                     LNLLLNEQHDKAIDAFIEAVQQDPDTSDLHFALGNLFRRRGEYERAVRVHEHLLNRAD
                     LPKSERTRAQYALAQDFMKAGLFDRAEAAYRALDGTPFGTEARLALLSLLERSRDWRA
                     AIEIARQLEQSGTASFAARISHYWCEVAIEADASGQHGVADEALREARDASPHSARPL
                     VLAGQRAAARGAHAQALQSWAALTTVQPAAFNLVARDYATSAIAAGERSSALERLHAL
                     YRRTPTLDLLEAIALLEPDEQGRRSGLLAHLRAHPSLSAAQALLGEGAAGGRDDAEAS
                     ALRDAVQRAAQPLHRYRCAACGFEAEHYFWQCPGCLGWDTYPPQRLEDL"
     gene            complement(6809..7120)
                     /locus_tag="VF308_13910"
     CDS             complement(6809..7120)
                     /locus_tag="VF308_13910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapA family protein"
                     /protein_id="HEX7437798.1"
                     /translation="MRLFVWLVRAAVFFTLFAFALNNQQDAAIRWFFGQEWRAPMVFI
                     VLAAFALGCAFGVVAMVPSWWRHRRLARTRMQRAGDKVAPAATGAVTEVPLQHPPRDG
                     L"
     gene            complement(7171..7500)
                     /locus_tag="VF308_13915"
     CDS             complement(7171..7500)
                     /locus_tag="VF308_13915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HEX7437799.1"
                     /translation="MTRSDLVVQLAERFSQLTHRDTEFAVKTIVDAMSVALARGHRIE
                     IRGFGSFSINRRPPRVGRNPRSGEQVVIPEKLVPHFKPGKALREAVDALPPAALPSAR
                     ATPPAHD"
     gene            complement(7526..>9044)
                     /gene="rpsA"
                     /locus_tag="VF308_13920"
     CDS             complement(7526..>9044)
                     /gene="rpsA"
                     /locus_tag="VF308_13920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEX7437800.1"
                     /translation="EAKVGAFVRVAIEALEDGFGETRLSRDKAKRLASWMSLENSLES
                     GEFVTGTVNGKVKGGLTVLVNGIRAFLPGSLLDTRPVKDMSPFEGKTMEFKVIKLDRK
                     RNNVVLSRRAVVEASMGEERAKLLSTLSEGAIVHGVVKNITEYGAFVDLGGIDGLLHI
                     TDMAWRRVRHPSEVVQVGQELQAKVLKFDAEKNRVSLGIKQLGDDPWHGVSRRYPTGT
                     RLFGKVTNIADYGAFVEIEPGIEGLVHVSEMDWTNKNVAPSKIVSLGDEVEVMVLEID
                     EDKRRISLGMKQCKANPWEEFATTVQRGDRVKGPVKSITDFGVFVGLAAGIDGLVHLS
                     DLSWHEPGEAAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDSDPFTSYTSVNDRGM
                     TVTGKVKTVDARGAEIQLNDDVTGYLRASEISRDRVEDARNVLKEGDEVSALIINVDR
                     KTRSIQLSIKAKDNVDNQEAMQRLAQTSERENAGTTSLGALLRAKLDNQSNKDNG"
BASE COUNT         1308 a         3036 c         3159 g         1541 t
ORIGIN      
        1 ctcgcgaaag acctgatcgt cgcgaaccat cccgagcgcg ccggattttc gtacgaggcg
       61 ttgccgctcg acgacccggc ggtctaccgg ctcttttccg aaggccgcac cgaatcggtg
      121 ttccagttcg aaagcgccgg catgcggcgc atgttgcgcg atgccaagcc gagccggctc
      181 gaagacctgt tcgcgctgaa cgcgatgttt cgtcccggcc cgatggacaa catcccgcgg
      241 ttctgcgcgc gcaagcacgg ccgcgaagag gtgagctatc cgcatccgct gctcgaagcg
      301 gtgctcggcg agacctacgg aatcatggtc taccaggaac aggtgatgca ggcggcgcag
      361 gtgctcggcg gctactcgct cggcggcgcc gatctgctgc gccgcgcgat gggcaagaag
      421 aagcccgagg agatggccca gcatcgcgag atctttcggc gcggtgcggc gcaaaagggc
      481 atcacgccgg tcgtggccga cgaagtcttc gacctgatgg agaagttcgc ggggtacggc
      541 ttcaacaagt cgcacgccgc cgcgtattcg cttctcgcgt atcagacggc ctggatcaag
      601 gtccacttca ccgccgagtt cttcgccgcg aacatgacgg tcgagctcga cgacaccgac
      661 aagctgaagg tgctgtgcgc cgacgcgaag accttcggca tcgtgctcga gccgcccgat
      721 gtcaaccgcg gcgtctatcg gttcgagccg gtgggggcga aggcgctgcg ctacgggctg
      781 ggcgccgtca agggcaccgg ccatggcgcg atcgaggcga tcgtggccgc gcgcgagggc
      841 agctcgggcg gcacggcggg cccgttccgc agcctcttcg acttctgtgc ccgcgtcgac
      901 cgccagcgca tcaatcgccg ggtcgtcgaa gcgctcgtca aggccggtgc cttcgatgcg
      961 ctgcatccgg atcgggcgag cgcactggcg agcgtgggcc gcgccctcga ctgggccgac
     1021 acgcaggccg cccatgtcga ccagggcggc ctcttcgatt tcggtgattc gcacgccgcg
     1081 agcacgcagg agcccacgct cgtgccggcc gagccgtgga gcatcaagga gcgcctgacc
     1141 ttcgagaagg cggcgctcgg cttctatctg tcggggcacc tcttcgacca gagcgccgac
     1201 gagatccgcc gcttcgtcaa gatgcgcatc gccgacctgc tcgacagccg cgagccgcag
     1261 cttctggccg gcatcgtcaa cgacctgcgc atcgtcaacg gccagcgcgg ccgggtcgcg
     1321 atcttcaagc tcgacgacac ctcggagtcg atcgaggcgg tcgtgggcga ggatgtcctc
     1381 ggcgcgaaca aggacctgct caaggacgac gagttgatcg tcgtccaggg cagggcccag
     1441 ccggaccggt tttcgggcgg catgcggctc aacgtgctgc aggtgtggga cctggccgcc
     1501 gcgcgctgcc ggttcgggaa gtacctgcgc gtcgaggtca acgggagcat cccgccggtg
     1561 gccgaagtgc tgcgcgattt tccgtcgcgc cgcatcccga gcgagcaggg cgatctggcg
     1621 cgcgggctca cggtgcgcct gcgggtgctg cgcgagcgcg ccagcgccga gctcgacctc
     1681 ggcgattcgg cccgcttcta tccgagcgac gcggcgatcg agcgttggcg cgccggcgcg
     1741 caccagggcc gcgcgaccgt cgtctacgaa tagacgggcg atgctgatgt ccgtctccac
     1801 ccccatcacg ggactggtcc tcaccggcgg cggcgcccgc gccgcctatc aggtcggagt
     1861 gctcaaggcg ctggcgcaga tccgtcgcga atgcgccttc acaccggtca atccgtttcc
     1921 ggtgctcgcc ggtacctcgg ccggtgccat caacgccgcg gcgctggctt gtcgtgccga
     1981 cgatttcgac ggcgcggtcg atgtcctgtg ccaggtctgg gagaacttct cggccgaaca
     2041 ggtctatcgc tccgattcga tcggcgtgat tcgcaccggt gcgcgctggc tgacgatgat
     2101 gtcgatcggc tgggtcatcg cgcgctggcg ccgcgcccgg ccgcgctcgt tgctcgacaa
     2161 caagccactc gaagccctgc tgcaccgcct cttcagcacc gaacggctgc atcaggtgat
     2221 gcgaagcggc cacctgcgcg ctctcgcggt gacggcatcg agctacggct cgggcctgca
     2281 cgtgacgttc tacgacgccg tcaccgacat cctgccgtgg acccgctcgc agcgcctcgc
     2341 ggtgcgcgat tcgatcagcg tggcgcacct gatcgcatcg tccgcgatcc ctttcgtctt
     2401 tccggcggtg ccgctctcga tcgacggcca cgtcgaatac tgcggcgacg gctcgatgcg
     2461 ccaggcggcg ccgatctcgc cagccgtgca tctcggcgcc gagcgcatcc tcgtcgtcgg
     2521 cgccgggcgc atgcacgagc cgccgggcca gcgcgcgggc agcagcgaat acccgaatct
     2581 ggcccagatc gccggccacg cgctctcgaa catctttctc gacgcgctgg cagtcgatgt
     2641 cgagcggctc cagcgcatca acgccacgct cgcgttgctg acgccgcgcg cgcgcgcgtc
     2701 gacgagcctg aagccgatcg aggtgctggt catcgcgccg agcgagcggc tcgacgacat
     2761 cgccgccaag catctcggca gcctgccgct gccgatccgg gcgatgctgc gcggcgtcgg
     2821 cgtctcgggg gagggcgacg acgcgcgtgg tgcggccctg gccagctatc tgctcttcga
     2881 agcgccctac acccgcgaac tgatggccct cggcgtcatc gacacgatag cgcgacgcga
     2941 cgcggttgtg gccttcttcg gttggggtcg cgcactggag cccgataccg ttcccggcga
     3001 agccggggag ttgcgcatcg aatgaagtag aacgccccgc catcgcgggg cgtcggccga
     3061 ggcttatttc ttcgccggcg cgcttgccgc ggttttcgcg ggcgtcgctt cgctggcggc
     3121 cttcgccttt ttcgccgcct tttcatcggc cttttccttg gccttctgtt tcgcgatttc
     3181 ggcgtcctct gcggcgcgcg ccgcggcgcg ctccttggcc tgtgccttgc gtgtcgcgtc
     3241 ggtgggggcg gcggtgcgcg cgctgtcggc ggccggcgcc ggggtcacgg gttcgttcgc
     3301 cttcgaagct gctttcatcg tcgattttcc ttctttcttc gccgctgccg gagcgccggc
     3361 gtaggcggcg ccgttgaccg tgagtccgtc ggcagagaac ttggcagcgt tgtgctcgcc
     3421 gacgcccttg acccgggtga ccatgtcgtc ccaatccttg aacgacgcct tcttgcgctc
     3481 gtcgaggatc ttcgtggcga tcaccggccc gatgcccttg atcgactcca ggtcggcctg
     3541 cgtggccttg ttgacgtcga ccgccgcgaa cgccgcggct gcgagcagtg ccagtatggc
     3601 ggcaaacaac ttcttgatca tgcttattcg tcctgtttga tggcggatgg gactgggagt
     3661 cgatcgtagc gcgcctgcgg cggccggccc tgcgctacaa cgggtgggaa ccgtgcgtcg
     3721 ttgaccgcct cagggccggc caccgagcca gccgacgtag tcgcgaaccc cgctcgccac
     3781 gtcggcgaag gcatgatcgc agccgattgc gcgcaggcgc gagaggtcgg cctcggtgaa
     3841 gcactggtat cggccgacca gggcttcggg aaacggaatg tattcgacga ggccgcgcgc
     3901 caccaggtcg tcgaggtcga gggcgggctc gccgcgcgat actcgcaccg cgttcacggt
     3961 ggcaacggcc acgtcgttga acggctgcgc gcgcccgctg ccgagattga agatgccgct
     4021 cgcctgcgga tgctgtagga accacaggtt gaccgcgacc acgtcgccga cgaagacgaa
     4081 gtcgcgcatc tgcaggcctg ggccgtggcc gccgtactcg ccgaacaggc tgaccttgcc
     4141 gttctgggtg tactgctgat ggtggtgaaa ggcgaccgag gccatgcggc ccttgtgttg
     4201 ctcgcgcggg ccgtagacgt tgaagtagcg aaatcccgcg acctgggtct tcgcggccgg
     4261 cagggcgcgc cggaccacgt tgtcgaagag gagcttcgaa tagccgtaga cgttgagcgg
     4321 ctgctcgaag ccgggctctt cgcgaaacga cgcgctgccg ccgtaaaccg cagccgacga
     4381 ggcgtagagc aggcgcgtgc cctgcgccag gcaggcgtcg aggaggtcct tcgaacagcg
     4441 gtagttgttg tcgagcatga agcggccgtt gtgctccatc gtgtcggagc aggcgccctg
     4501 gtgcagcacg gcatcgacct tgcccaactc gccgcgcgcg aagcggccgt agaagtcgct
     4561 cttgtcgaag tagtcgctga ggcgcgcgcc gagcaggttg cggtacttcg gcccgtcggt
     4621 caggtcgtcg acggcgatca cgtcgtcgac gccgatggcg ttgaggccat ggacgagatt
     4681 gctgccgatc atgccggcgg ctccggtgac gacgattctc atcgcaagtt tctcatgcga
     4741 acagttcctc gtaggtgacg ctcgcggtgc cgaacttgcc gacgacgatg cccccggcgc
     4801 ggttcgcgat cggcatcgcc tcgcgcagct cgagcccgca ggccagcatc gccgcgagcg
     4861 tggcgatcac ggtgtcgccg gcaccggtca cgtcgaacac ctcgcgcgcc tgcgccggca
     4921 cgcgggcttg gccggcggcg tcgaagaggg acatgccttc ctcggaacgc gtcagcacga
     4981 ccccgccgag gtcgaatcgc cggcgcagcg cctgggtctc gagttcgagc tgcgcctcgc
     5041 tgtgccaggc gccgatcacc tgggcgagtt cgacccggtt cggcgtgatc acggtggcgc
     5101 cggcgtagcg gctgtagtcg ctgcctttcg ggtcgacgag caccgccttg ccgtgttcgc
     5161 gcgcgagcgc gatcatgcgc ggaatgtggg tcaggccgcc cttgccgtag tcggagaaga
     5221 gcaccgcgtc gtggtcgggc agagcgcgct cgtagtcgcc gagcatgctg gtgagcacct
     5281 cgtgatcggg ctggttctcg aagtcgacgc gcagcagttg ctgggcccgg ccgatgacgc
     5341 gcagcttgac gatcgtgtag agctgcgggt cgctgccgag gagcgccgcc acgccgtgct
     5401 gctcgagcag gcggcgcagg cgtccggcgg cgtcgtcgct gccgacgacg gtcagcaggg
     5461 tcgcccgcgc gccgagcgtc tgcacattga gcgccacgtt ggcggcgccg ccgagacgct
     5521 cttcctcgcg cgtcacgcgc accaccggca ccggcgcttt gggcgagatg cggtcgactg
     5581 cgccgaacca gtagcgatcc agcatcgcat cgccgaccac caggatgcgc gcccgggcga
     5641 ggcgcttgcg ggacggatgg gtgcgcatca gagatcctcc aggcgttgcg gaggataggt
     5701 gtcccagccg aggcaacccg ggcactgcca gaaatagtgt tcggcttcga agccgcaggc
     5761 ggcgcagcgg tagcggtgca gcggctgcgc ggcgcgctgc accgcgtcgc gcaaggcgct
     5821 ggcctcggca tcgtcgcgcc cgccagctgc gccttcgccg agcagcgcct gggcggccga
     5881 aaggctcgga tgggcgcgca ggtgggcgag cagaccggag cgccggccct gctcgtcggg
     5941 ctcgagcagg gcgatggcct cgagcagatc gagcgtcggc gtgcgccggt agagcgcgtg
     6001 caggcgttcg agcgcgctcg aacgctcgcc cgcggcgatc gcgctcgtcg catagtcgcg
     6061 ggcgaccagg ttgaaggcgg ccggctgtac cgtggtcagc gccgcccagc tctgcagcgc
     6121 ctgcgcatgg gcgccgcgcg cggcggcgcg ctggccggcc aggaccagcg gccgcgcgga
     6181 atgcggtgac gcgtcgcgcg cctcgcgcaa cgcctcgtcg gcgacgccgt gctgtccgct
     6241 cgcgtcggcc tcgatcgcga cttcgcacca gtagtgggaa atgcgcgccg cgaacgacgc
     6301 ggtgccgctc tgctcgagct ggcgcgcgat ctcgatcgcg gcgcgccagt cgcgcgagcg
     6361 ctcgagcagg ctgagcagcg cgagccgcgc ttcggtgccg aacggcgtgc catcgagcgc
     6421 gcggtaggcg gcttcggcgc ggtcgaagag accagccttc atgaaatcct gggccagggc
     6481 gtactgcgcc cgggtgcgct cgctcttcgg tagatcggcg cggttgagca ggtgctcgtg
     6541 gacgcgcacc gcacgctcgt actcgcctcg gcgccggaac aggttgccga gcgcgaaatg
     6601 aagatccgag gtgtccggat cctgctgcac ggcttcgatg aaggcgtcga tcgccttgtc
     6661 gtgctgctcg ttgagcagca ggttcagtcc cttgtagtag accttgggcg aatccttctg
     6721 ctcacgccgc cactggcgca cgtcgatccg cgacgcgaac cggccgagtg cgaatgcgac
     6781 cgggagcccc cacagcaacc actgcaggtc aaagtccatc gcgcgggggg tgctgcagcg
     6841 ggacttcggt gacggcgccg gtcgcggccg gtgccacctt gtcgccggcc cgctgcatgc
     6901 gcgtgcgcgc caggcgccga tgccgccacc agctcggcac catcgcgacg acgccgaagg
     6961 cgcagccgag cgcgaacgcg gcgagcacga tgaagaccat cggggcgcgc cattcctggc
     7021 cgaagaacca tctgatcgcc gcgtcctgct ggttgttcag cgcgaacgcg aacaacgtga
     7081 agaagacggc tgcgcggacg agccagacaa atagtcgcat cgaaactccc gcggcgattc
     7141 tagcggcggg gtcggcgcga accgccgccg tcaatcgtgt gccgggggcg tggccctggc
     7201 cgacggcagc gccgccggtg gcagcgcgtc gaccgcttcg cgcagtgcct tgccgggctt
     7261 gaaatgcggc accagctttt cgggaatgac gacctgctcg cccgagcgcg ggttgcgccc
     7321 gacacgcggc ggacgccggt tgatcgagaa gctgccgaaa ccgcggatct cgatgcggtg
     7381 gccgcgcgcg agcgccaccg acatcgcgtc gacgatcgtc ttcaccgcga actcggtatc
     7441 gcgatgggtc agctggctga atcgctcagc cagctgcacc acgaggtcgg agcgagtcat
     7501 cggaccggtg ccgttcgacg gccggtcagc cgttgtcctt gttgctctgg ttgtcgagct
     7561 tggcgcgcag tagcgcaccc aggctcgtcg tgccggcgtt ctcgcgttcg ctggtctggg
     7621 ccagacgctg catcgcttcc tggttgtcga cgttgtcctt ggccttgatc gacaactgga
     7681 tcgagcgcgt cttgcggtcg acgttgatga tcagcgccga gacttcgtcg ccttccttga
     7741 gcacgttgcg ggcgtcctcg acgcggtcgc ggctgatttc ggaggcacgc aggtagccgg
     7801 tcacgtcgtc gttgagctgg atctcggcgc cgcgcgcatc gaccgtcttg accttgccgg
     7861 tcaccgtcat gccgcggtcg ttgactgagg tgtagctcgt gaacgggtcg gagtcgagct
     7921 gcttgatgcc gagcgagatg cgctcgcggt cgacgtcgac cgcgagcacg atcgcctcga
     7981 cctcctggcc cttcttgtag ttgcgcacgg ccgcttcgcc cggctcgtgc caggacaggt
     8041 cggacaggtg cacgaggccg tcgatgccgg ctgccagacc cacgaacacg ccgaagtcgg
     8101 tgatcgactt gaccgggccc ttgacgcggt cgccgcgctg caccgtggtc gcgaactctt
     8161 cccacgggtt cgccttgcac tgcttcatgc cgaggctgat gcggcgcttg tcctcgtcga
     8221 tctcgaggac catgacctcg acctcgtcgc cgagcgagac gatcttgctc ggggcgacgt
     8281 tcttgttggt ccagtccatc tcggaaacgt gcactaggcc ttcgatgccc ggctcgatct
     8341 cgacgaatgc gccgtagtcg gcgatgttgg tgaccttgcc gaacaggcgc gtgccggtcg
     8401 ggtagcgccg cgacacgccg tgccacgggt cgtcgccgag ctgcttgatg ccgagcgaga
     8461 cgcggttctt ctcggcgtcg aacttgagca ccttggcctg cagttcctgg ccgacctgga
     8521 ccacctcgct cgggtggcgc acgcggcgcc aggccatgtc ggtgatgtgg agcaggccgt
     8581 cgatgccgcc gaggtcgacg aaggcgccgt attcggtgat gttcttgacg acgccgtgga
     8641 cgatcgcgcc ttcggacagc gtcgacagca gcttggcgcg ttcctcgccc atcgaggctt
     8701 cgaccacggc gcggcgtgac aacacgacgt tgttgcgctt gcggtcgagc ttgatgacct
     8761 tgaactccat cgtcttgccc tcgaacgggc tcatgtcctt gaccgggcgc gtgtcgagca
     8821 gcgagcccgg caggaaggcg cggatgccgt tgacgaggac ggtgaggccg cccttgacct
     8881 tgccgttcac cgtgccggtg acgaattcgc cggattcgag cgagttttcg agcgacatcc
     8941 acgaggccag gcgcttggcc ttgtcgcgcg acaggcgcgt ttcgccgaag ccgtcttcca
     9001 gggcctcgat ggcgacgcgg acgaaagcgc cgactttggc ctcg
//
LOCUS       DASVHM010000757         3430 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_995419, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000757 DASVHM010000000
VERSION     DASVHM010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3430
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_995419"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..447
                     /locus_tag="VF308_13925"
     CDS             <1..447
                     /locus_tag="VF308_13925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7437801.1"
                     /translation="VLIALQCIAAAQASIDETWQYVKERRTFGLPLAQYQGVTFPIVE
                     SETMLAAARQLCYHALELRDAGRPHTAEAAMVKWFAPKTAFDAIHQCLLTFGHYGWSM
                     DLPHQQRLRDVMGLEIGDGTAQVMKLIVARDRVGRLAVQYAAQEKP"
     gene            444..1232
                     /locus_tag="VF308_13930"
     CDS             444..1232
                     /locus_tag="VF308_13930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEX7437802.1"
                     /translation="MSAGPVVVALRDDTVGIIELARPEKFNCLSLAVHEGIAAALGDF
                     ERAGSGVRSVLVRGQGKHFCTGADLDEVLSLRGRPDDLARFISLGHAVLRRFEASPLP
                     VVAACQGLCLAGGLELMLACDVVFAARDARFGDQHAQFGLVPGWGGSQRLPRVAGLRR
                     ALDLFFSARWLDAETAQQWGLVNHVVAAGELAAEALAYCRAVGTRSRGGLAIMKRLAR
                     EGIEGPLDQGLTIEERQAPAALLSADVGEGLAAFVARRKPNFEA"
     gene            1313..2920
                     /locus_tag="VF308_13935"
     CDS             1313..2920
                     /locus_tag="VF308_13935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEX7437803.1"
                     /translation="MTQLQSRISTDDAEFRLNRAAYEALIATLHEKRRLASVGGPPKI
                     RERHRARGKILPRDRVELLLDPGSPFLELAQLAGDGRYEGVPPGASLITGIGLVSGRP
                     CMIIANDATVKGGTYYGMTCKKHVRAQQIAQAHRLPCITLVDSGGAFLPDMANIFPDV
                     GQFGSIFNNQVRMSAEGIAQIAVVMGPCTAGGAYIPALSDQVVIVREQGYMYLGGPEL
                     TFAATREEVDAESLGGAQMHSSLSGVTDQIAEDDLHALAITREIVRDLGAPAAPRWTR
                     QAALAPRFDPREIYGIVSRDPRIPTDTRAILARVVDDSRFQEFKPLYGDTLLTGFAHL
                     HGHPIGIVANQGVLFTESALKAAHFIDLCCQRDIPLLFMSDVTGFMVGRAAEQGGIAK
                     AGAKMITAMASANVPKYSIIIGASYGAGYLAMCGRPFNPTAMFAWPNARSAIMGPEQA
                     ATVMALVRQQIMRNEGDDWNADEEEAFKAPVRKIYVDFQDMYNFASNLWVDGILDPVE
                     TRDTMGLLLDLASRTAAKPTPFGVFRF"
     gene            2939..>3430
                     /locus_tag="VF308_13940"
     CDS             2939..>3430
                     /locus_tag="VF308_13940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HEX7437804.1"
                     /translation="MQRITKVLIANRGEIACRIARTCRRLGLAVATIHSSADRSALHV
                     REIGESIEVGGAAAAESYLDIDAVLGAAARAGADAVHPGYGFLSENAAFARAVEAAGL
                     IFIGPSAATIEHIGGKASAKRAAARLGLPVVAGSDAGLLDAAAIAAQVRRMSLPVVLK
                     AVAG"
BASE COUNT          512 a         1209 c         1199 g          510 t
ORIGIN      
        1 gtgctgatcg cgctgcagtg catcgccgcg gcgcaggctt cgatcgacga gacctggcag
       61 tacgtgaagg agcgccggac cttcggcctg ccgctcgcgc agtaccaagg cgtgaccttt
      121 ccgatcgtcg aatccgaaac gatgctcgcc gcggcgcgcc agctctgcta ccacgcgctc
      181 gagctgcgcg acgccggccg tccccacacg gccgaagccg cgatggtgaa atggttcgcg
      241 ccgaagaccg ccttcgatgc gatccaccag tgtttgctca ccttcggcca ctacggctgg
      301 tcgatggacc tgccgcacca gcagcgcctg cgcgacgtga tgggcctgga gatcggcgac
      361 ggcaccgcac aggtgatgaa gctgatcgtg gcgcgcgatc gggtcggccg cctggcggtg
      421 cagtacgcgg cgcaggagaa accatgagcg ccggaccggt ggtggtggcg ctgcgcgacg
      481 acacggtcgg catcatcgag ctggcgcggc ccgagaaatt caattgcctg tcccttgcgg
      541 tgcacgaggg catcgccgcc gcgctcggcg acttcgagcg cgcgggcagc ggcgtgcgct
      601 cggtgctggt gcgcggccag ggcaagcact tctgcaccgg tgccgatctc gacgaggtgc
      661 tgagcctgcg cggacgaccc gacgacctgg cccgtttcat ttcgctcggc catgcggtgc
      721 tgcggcgctt cgaggcgagc ccgcttccgg tcgtggcggc ctgccagggc ctgtgcctgg
      781 ccggcggcct cgaactgatg ctggcctgcg acgtggtgtt cgcggcacgc gacgcccgct
      841 tcggcgacca gcacgcgcag ttcggtctcg tcccgggctg gggcggcagc cagcgcctgc
      901 cgcgcgtcgc gggtctgcgg cgcgcgctcg atctgttctt ttcggcgcgc tggctcgatg
      961 ccgagacggc gcagcagtgg ggcctcgtca accacgtcgt cgcggcgggc gaactcgccg
     1021 ccgaagcgct cgcctattgc cgcgcggtcg gcacgcgcag ccgcggcggc ctcgcgatca
     1081 tgaagcggct cgcgcgcgag ggcatcgaag gtccgctcga ccagggcctc acgatcgaag
     1141 aacgtcaggc ccccgcggcg ctgctgagcg ccgatgtcgg cgagggcctg gccgctttcg
     1201 ttgcgcgccg caagccgaac ttcgaagcat gagcccgagc gcacggccgt ccgaagccgg
     1261 gctccctccc ctcgggggag cggcagcggt accccgctga cgaggggcac ccatgaccca
     1321 gctgcaatcg cgcatctcga cggacgatgc cgagttccgc ctgaaccgcg cggcctacga
     1381 agcgctgatc gccacgctgc acgagaagcg ccgcctggcg agcgtcggcg gcccgccgaa
     1441 gatacgcgag cgtcatcgcg cgcgcggcaa gatcctgccg cgcgaccggg tcgagctgct
     1501 gctcgatccg ggctcgccgt tcctcgagct ggcgcagctc gccggcgacg gccgctacga
     1561 gggcgtgccg ccgggcgcga gcctgatcac cggcatcggc ctcgtctcgg gtcggccctg
     1621 catgatcatc gccaacgatg ccaccgtgaa gggcggtacc tactacggca tgacgtgcaa
     1681 gaagcacgtg cgcgcccagc agatcgccca ggcgcaccgg ctgccctgca tcacgctggt
     1741 cgacagcggc ggcgcgttcc tgcccgacat ggccaacatc tttcccgacg tcggccagtt
     1801 cggtagcatc ttcaacaacc aggtgcgcat gtcggcggaa ggcatcgcgc agatcgccgt
     1861 cgtgatgggc ccgtgcacgg cgggcggcgc gtacatccct gccctctccg accaggtcgt
     1921 gatcgtgcgc gagcagggct acatgtacct cggcggcccc gagctgacgt tcgcggcgac
     1981 gcgcgaagag gtcgatgccg aaagcctcgg cggcgcgcag atgcactcga gcctcagcgg
     2041 cgttaccgac cagatcgccg aggacgacct gcatgcgctc gcgatcacgc gcgagatcgt
     2101 gcgcgacctc ggcgcgccgg cggcgccgcg ctggacgcgg caggccgcct tggcgccgcg
     2161 cttcgacccg cgcgagatct acggcatcgt cagccgcgat ccgcgcatcc cgaccgatac
     2221 gcgtgccatc ctcgcccgcg tcgtcgacga cagccggttc caggaattca agccgcttta
     2281 cggcgacacg ctgctgaccg gcttcgcgca cctgcacggc cacccgatcg gcatcgtcgc
     2341 caaccagggc gtgttgttca ccgagagcgc gctgaaggcc gcgcacttca tcgacctgtg
     2401 ctgccagcgc gacatcccgc tgctgttcat gagcgacgtc accggcttca tggtcggccg
     2461 tgccgccgag cagggcggca tcgcgaaggc cggcgcgaag atgatcaccg cgatggcgtc
     2521 ggccaacgtg cccaagtact cgatcatcat cggtgcgtcg tacggcgccg gctacctggc
     2581 gatgtgcggc cggccgttca acccgaccgc gatgttcgcg tggccgaacg cgcgctcggc
     2641 gatcatgggc ccggagcagg ccgcgaccgt gatggcgctg gtgcgccaac agatcatgcg
     2701 caacgagggc gacgactgga atgccgacga agaggaggcc ttcaaggcgc cggtgcgcaa
     2761 gatctatgtc gactttcagg atatgtacaa cttcgcgtcg aacctgtggg tcgacggcat
     2821 cctcgacccg gtcgagaccc gcgacacgat gggcctgttg ctcgacctgg cgtcgcgcac
     2881 cgccgcgaag ccgacgccgt tcggcgtgtt ccgcttctag gtcgaagagc ccgacgcgat
     2941 gcaacgcatc accaaggtcc tgatcgcgaa ccgcggcgag atcgcatgcc gcatcgcgcg
     3001 cacctgtcga cgcctcggcc tcgcagtcgc gacgatccat tcgagcgccg accgctcggc
     3061 gttgcacgtg cgcgagatcg gcgaatcgat cgaagtcggc ggcgcggcgg cggccgaaag
     3121 ctatctcgat atcgatgcgg tgctgggtgc cgccgcacgc gccggcgccg atgcggtgca
     3181 tccgggctat ggcttcctgt cggagaacgc cgcgttcgcg cgcgcggtcg aggccgcggg
     3241 gctcattttc atcggcccga gcgccgcgac gatcgagcac atcggcggca aggcgagcgc
     3301 caagcgtgca gcggcgcgcc tgggcctgcc ggtggtcgcc ggcagcgacg ccggcttgct
     3361 cgacgccgcc gcgatcgcgg cgcaggtgcg ccgcatgagc ctgccggtcg tgctgaaggc
     3421 ggtggcgggc
//
LOCUS       DASVHM010000758         4956 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1066390, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000758 DASVHM010000000
VERSION     DASVHM010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4956
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1066390"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..726
                     /gene="bcrD"
                     /locus_tag="VF308_13945"
     CDS             <1..726
                     /gene="bcrD"
                     /locus_tag="VF308_13945"
                     /EC_number="1.3.7.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR02261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018522 - benzoyl-CoA reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA reductase subunit D"
                     /protein_id="HEX7437805.1"
                     /translation="RDPMTLAQEGRDGVLAEAGLGLDDVDYVATTGEGENVKFATGHF
                     YSMTTHARGGVFLHPGASAVVDIGALNGRAIYVDPRGKVLAYKMTSQCASGSGQFLEN
                     IARYLGVAIEEIGPLSQSSQNPEKCSSICAVLAETDVINMVSRGIATPDVLKGIHLSM
                     ASRIVKLLKVTGIKQGTALITGGLALDSGLLAAIQEEMVNEKVGVVAVSHPDSIYAGA
                     IGAALWGAFRHAKLNGLRELAAA"
     gene            760..1005
                     /locus_tag="VF308_13950"
     CDS             760..1005
                     /locus_tag="VF308_13950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004280584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEX7437806.1"
                     /translation="MALLINDNCTACDACKPVCPNEAISVGELIYVIDALRCTECVGA
                     EDEPQCKLVCPADCIVINPDFVETPDELQAKYEALHA"
     gene            1024..1905
                     /locus_tag="VF308_13955"
     CDS             1024..1905
                     /locus_tag="VF308_13955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437807.1"
                     /translation="MDLATFLVQCLNGLQYGLLLFLVASGLTLIFGIMRVINLAHGSF
                     YMIGAYMAFSLAPVVSGTFGGGFFVTLLVGVLLAVLFGYVLEWAFFSFLYRREHLQQV
                     LMTYGLILVFEELRSLLVGDDVHGVKPPDILAGSLPLGQLMSYPVYRLFISFVCLALA
                     LAMYLVLSRTRLGMMIRAGSTNREMIQSLGIDIQFLYRVVFAAGVAIAVLAGMVAAPV
                     SSVYPGMGNTVLIVCFVVVVIGGIGSIRGALLASLLVGMIDTFGTVLLPQAAGVLVYV
                     LMALILLWKPDGLFRAA"
     gene            1910..2905
                     /locus_tag="VF308_13960"
     CDS             1910..2905
                     /locus_tag="VF308_13960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437808.1"
                     /translation="MDRPKTLFVALTFAALALYPLVAGSFGIDLVTKTMIYAIFALSL
                     ELLVGGTGLVCFGHAAFFGVGAYSLVLLSSSIGSASLWWLLPCCVLAAAAYALFVGSL
                     SLRTRGVYFIMVTLAFAQMAYYVAHDTPLGGGTDGIYLTLAPILGGLDLSRSPAVYAF
                     TLVCLATVFGFLALLLRSRFGRALTGIRINEQRMRATGFSTYGYKLAAFVISGALAGL
                     AGALFALKDGYVNPELMGWHLSGAVLIMVILGGIGHLRGALIGAFAFALLQELFQSEA
                     IFGGFAKHWHLGLGLAIIASVALLPRGLVGVPAQLRERLLGFKATPLAEISDAVA"
     gene            2892..3647
                     /locus_tag="VF308_13965"
     CDS             2892..3647
                     /locus_tag="VF308_13965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003071967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437809.1"
                     /translation="MPSPEILLRGRDISRRWGGLVAVDRVSLELRRDSVHAVIGTNGA
                     GKSTLIDILSGETAPSAGSVELLGKDVTRWTQPRRARRGLGRSYQRNTIFPGLTVLEN
                     CRLAAQARTQRPWAWWGAASACAASVEAARTAAARTGLDDLLGHDAGLLSHGQKRQLE
                     IAMCLATRPDVLLLDEPLAGMGAEETERMLELLAELKSGHAILLVEHDMDAVFRIADV
                     VTVMVDGAVIASGTPDFVRASPAVRAAYLGDAH"
     gene            3649..4362
                     /locus_tag="VF308_13970"
     CDS             3649..4362
                     /locus_tag="VF308_13970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014750017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437810.1"
                     /translation="MDASLIVDARCLHAWYGSSHVLHGVDLQIHRGETVGLLGRNGMG
                     KSTLIRTLLGHVSRRDGYIGLFGQDMSRAQPHQVARCGVAYVPEGRGVFPNLSVRENL
                     VMAARPCGDAGAGWTYRRVLSTFPRLGERLHHLGAQLSGGEQQMLSLGRALLTQPRLI
                     ILDEATEGLAPKTVLEIWRVIEEIRASGIASLIVDRNYRKVLQESDSAVVLLKGRVVL
                     AEASSLLRERSELASHLGV"
     gene            4403..4810
                     /locus_tag="VF308_13975"
     CDS             4403..4810
                     /locus_tag="VF308_13975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019142933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX7437811.1"
                     /translation="MQLDPYVHFDGHCEDAIRFYRHALGAEVTTLVRRSDDPSGRADD
                     ATGDPDTVLHVSLRIGEAMLSGTDMPGRGGSGWLGYSVTLPAASDADAERLFARLAEG
                     GQVTMPLTTTFFASRIGMVTDRFGVPWTVVSDG"
BASE COUNT          667 a         1735 c         1696 g          858 t
ORIGIN      
        1 cgcgatccga tgaccctggc gcaggagggc cgcgacggcg tcctcgccga ggccggcctc
       61 ggcctcgacg acgtcgacta cgtcgccacc accggcgagg gcgagaacgt caagttcgcc
      121 accggccact tctattcgat gacgacgcac gcgcgcggcg gcgtcttcct gcatcccggc
      181 gccagcgccg tcgtcgacat cggcgcgctg aacgggcgcg cgatctacgt cgatccgcgc
      241 ggcaaggtgc tcgcctacaa gatgacgagc cagtgcgcct cgggctcggg ccagttcctc
      301 gagaacatcg cccgctacct cggcgtcgcc atcgaggaga tcgggccgct gtcgcagagc
      361 tcgcagaacc cggagaagtg cagctcgatc tgcgccgtgc tggccgagac cgacgtcatc
      421 aacatggtct cgcgcggcat cgccacgccc gacgtgctca aggggatcca cctgtcgatg
      481 gcgtcgcgca tcgtcaagct gctgaaggtc accggcatca agcaggggac ggcgctgatc
      541 accggcggct tggcgctgga cagcggcctg ctcgcggcga tccaggaaga gatggtcaac
      601 gagaaggtcg gcgtcgtcgc ggtgagccat ccggactcga tctacgccgg cgccatcggc
      661 gccgcgttgt ggggcgcgtt ccgccacgcc aagctgaacg ggctgcgcga gctcgccgcg
      721 gcctagtccg cacggcccgg gaacccaggg gagatctcca tggcactgct catcaacgac
      781 aactgcaccg cctgcgacgc ctgcaagccg gtgtgcccga acgaagcgat cagcgtcggc
      841 gagctgatct acgtcatcga cgcgctgcgt tgcaccgaat gcgtcggcgc cgaggacgag
      901 ccccagtgca agctggtgtg tccggccgac tgcatcgtca tcaaccccga cttcgtggag
      961 actcccgacg agttgcaggc gaaatacgag gctctgcatg cctgagccgc atgccgccgc
     1021 gccatggatc tcgccacctt tctcgtccag tgcctgaacg ggctgcagta cgggctgctg
     1081 ctcttcctcg tcgcttcggg gttgacgctg atcttcggga tcatgcgggt catcaacctg
     1141 gcccacggca gcttctacat gatcggcgcc tacatggcgt tttcgctggc gccggtcgtt
     1201 agcggcacgt tcgggggcgg cttcttcgtc acgctgctgg tcggcgtcct gctcgcggtg
     1261 ctcttcggct atgtcctcga gtgggcgttc ttcagcttcc tctaccggcg cgagcacctg
     1321 cagcaggtgc tgatgaccta cgggctgatc ctcgtcttcg aggagctgcg gagcctcctc
     1381 gtcggcgacg acgtgcacgg cgtgaagccg cccgacatcc tcgccggcag cctgccgctc
     1441 ggccagctga tgagctatcc ggtgtaccgc ctgttcattt ccttcgtctg cctcgcgctc
     1501 gccctcgcca tgtacctggt cctctcgagg acgcgtctgg gcatgatgat ccgcgccggc
     1561 agcacgaacc gggagatgat ccagtcgctc ggcatcgaca tccagttcct gtaccgggtg
     1621 gtgttcgccg ccggggtggc gatcgcggtg ctcgccggca tggtggccgc gcccgtgtcg
     1681 tcggtctatc ccggcatggg caacaccgtg ctcatcgtct gcttcgtggt ggtggtgatc
     1741 ggcggcatcg gctcgatccg cggcgcgctg ctcgcctcgc tgctggtcgg gatgatcgac
     1801 accttcggga cggtcctgct gccacaggcg gcgggcgtcc tggtctacgt gctgatggcg
     1861 ctgatcctgc tgtggaagcc ggacgggctg ttccgggcgg catgacgcga tggaccggcc
     1921 gaagacgctc ttcgtcgcgc tgactttcgc agcgctggcg ctgtacccgc tggtcgcggg
     1981 atcgttcggc atcgatctcg tcaccaagac gatgatctat gccatcttcg cgctcagcct
     2041 cgagctcctg gtcggcggca cggggctggt ctgcttcggc catgccgcgt tcttcggcgt
     2101 cggcgcctat tcgctggtgc tgctgtcctc gtcgatcggc tcggcatcgc tgtggtggct
     2161 gctgccttgc tgcgtcctcg ccgccgcggc gtacgcgctg ttcgtcggct cgctctcgct
     2221 gcgcacccgg ggtgtctact tcatcatggt cacgctcgcc ttcgcgcaga tggcctatta
     2281 cgtcgcccac gacacgccgc tgggcggcgg caccgacggc atctacctga cgctcgcgcc
     2341 catcctgggc gggctcgatc tctcccggtc accggcggtc tatgccttca ccctcgtctg
     2401 cctggcgacg gtgttcggct ttctcgcgct cctgctgcgc tcgcgcttcg gccgggcgct
     2461 gaccgggatc cggatcaacg agcagcgaat gcgcgccacg gggttctcga cctacggcta
     2521 caagctcgcc gcgttcgtga tctcgggcgc actggcgggc ctcgccggcg cgttgttcgc
     2581 gctcaaggac ggctacgtca accccgagct gatgggctgg cacctatcgg gcgcggtgct
     2641 gatcatggtc atcctcggcg gaatcggcca cctgcgaggg gccttgatcg gcgccttcgc
     2701 gttcgcgctg ctgcaggagc tgttccagtc ggaggccatc ttcggcggct tcgccaagca
     2761 ctggcacctg gggctggggc tggcgatcat cgccagcgtg gcgctgctgc cgcgcggcct
     2821 cgtcggcgtg ccggcacagc tgcgcgagcg gctcctcggc ttcaaggcga cgccgctcgc
     2881 ggagatctcc gatgccgtcg cctgagatcc tgctgcgcgg ccgcgacatc tcgcgccggt
     2941 ggggcggcct ggtcgccgtc gaccgggtct cgctcgagct ccgccgcgac agcgtgcacg
     3001 cggtcatcgg cacgaacggc gccggcaagt ccaccctgat cgacatcctg tcgggcgaga
     3061 cggcgccttc ggccggcagc gtcgagcttc tcggcaagga cgtgacgcgc tggacgcaac
     3121 cccgtcgtgc gcggcgaggt ctcggccgca gctatcagcg caacaccatc ttccccggcc
     3181 tgacggtgct ggagaactgc cggctcgcgg cgcaggcgcg cacccagagg ccgtgggcat
     3241 ggtggggcgc cgcctcggcc tgcgcagcga gcgtcgaggc ggcgcggacg gcggcggcgc
     3301 gcaccgggct cgacgacctc ctcgggcacg acgccggcct gctgtcgcac ggccagaagc
     3361 gtcagctcga gatcgcgatg tgcctggcga cccgtccgga cgtcctcctg ctcgacgagc
     3421 cgctcgccgg aatgggcgcg gaggaaaccg agcgcatgct ggagttgctg gccgagctga
     3481 agagcggcca cgcgatcctg ctcgtcgagc acgacatgga cgcggtgttc cgcatcgccg
     3541 atgtcgtcac ggtcatggtc gacggtgccg tgatcgcgtc gggcacgccg gacttcgttc
     3601 gcgccagccc ggcggttcgc gccgcctatc tcggcgatgc gcattgagat ggacgcctct
     3661 ctcatcgtcg acgcccgctg cctgcatgcc tggtacggct cgagccacgt gctgcacggc
     3721 gtcgacctgc agattcaccg cggcgagacc gtcggcctgc tcggccgcaa cggaatgggc
     3781 aagagcacgc tcattcgcac gctgctcggc cacgtcagcc ggcgcgacgg ctacatcgga
     3841 ctgttcggtc aggacatgtc gcgggcgcag ccgcatcagg tcgcccgctg cggcgtcgcc
     3901 tacgtgcccg aggggcgcgg cgtgttcccg aacctctccg tgcgcgagaa cctcgtgatg
     3961 gcggcacggc cgtgcggcga cgccggcgcg ggctggacgt accgccgcgt gctctcgacc
     4021 tttccccgcc tcggcgaacg gctccaccat ctcggcgcac agctgtcggg cggcgagcag
     4081 cagatgctgt cgctcggccg cgccctgctg acgcagcccc ggctgatcat tctcgacgag
     4141 gccaccgagg gcctggcgcc gaagaccgtg ctcgagatct ggcgcgtcat cgaggagatc
     4201 cgcgcgagcg ggatcgcttc gctgatcgtc gaccgcaact accgcaaggt gctccaggag
     4261 tccgacagcg cggtcgtgct tctgaagggg cgggtcgtcc tcgccgaagc ctcgagcctg
     4321 ctgcgcgagc gttccgagct cgcctcgcat ctcggcgtgt gagcaccagc gccggacgcc
     4381 accgctgcca gaggagaaaa cgatgcaact cgacccctac gtgcatttcg acgggcactg
     4441 cgaggacgcg atccgcttct accgccacgc cctcggtgcc gaggtgacga ccctggtgcg
     4501 tcgcagcgac gatccgtcgg ggcgcgccga cgatgcgacc ggggaccccg acacggtgct
     4561 gcacgtgagc cttcgcatcg gcgaggcgat gctctcgggc accgacatgc ccggccgcgg
     4621 cggctccggc tggctcggct actcggtgac gctgccggcg gcgagcgacg ccgatgccga
     4681 gcgcctgttc gcgaggctgg ccgagggcgg tcaggtcacc atgccgctga cgacgacgtt
     4741 cttcgcgtcg cgcatcggca tggtgacgga tcggttcggg gtgccctgga ccgtcgtctc
     4801 ggacggctga cgtctcagga tcgccgaagc gtcgacgcga tcgcggagcg agaccacggt
     4861 gccgatcacg atcagcgccg gcggcttgac gccgtgcacc agcgccagcg tgggcagggt
     4921 ctgcaggctg ccggcgatcg ttcgctgctg cggccg
//
LOCUS       DASVHM010000759         1704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_198688, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000759 DASVHM010000000
VERSION     DASVHM010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198688"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..850)
                     /locus_tag="VF308_13980"
     CDS             complement(<1..850)
                     /locus_tag="VF308_13980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HEX7437812.1"
                     /translation="MVRTLDAHDLEDLLRSLEQPAALTEGAILAGCLVAAWCVVRLVR
                     GRSIPVASIWFGDRIVDGVLFPVLALAFAFGARLALEGILKPAVFRLAIPILISLVLI
                     RLSVRVLSATFPNTPWVRILERSISWLAWIAVVLWVTGIFPLMLDAMDDVRWKVGAAH
                     VTLRNVVEGTLTAGVVLVLALWISAAIEKKLLSGTGSDLSIRKMAANIVRALLLLVGL
                     LLALSAVGIDLTALSVLGGAIGVGLGFGLQKIAANYVSGFVILAERSLRIGDMVKVDN
                     FEGRITD"
     gene            complement(860..>1704)
                     /locus_tag="VF308_13985"
     CDS             complement(860..>1704)
                     /locus_tag="VF308_13985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HEX7437813.1"
                     /translation="DYLIASGLADALDRREAPPVDLADLVLAHSSGHVSELRELLAQV
                     SASGEPRAIDPDTIAGPGTWNAALCAAGAAVAATDAVIDGSVENAFCSVRPPGHHATR
                     DAAMGFCFFNNVAVAARHALDRRRLERVAIVDFDVHHGNGTEDIIAGDERVLMVSIFQ
                     HPLYPYSGGVPMGTNMVNVPIPAYSRGGAVRELIEANWMPRLEAFRPQMIFISAGFDA
                     HREDDLGQLGLVEADYEWITQRVKAVADRHAKGRIVSCLEGGYNLGALARSVAAHVRV
                     LAGV"
BASE COUNT          298 a          592 c          581 g          233 t
ORIGIN      
        1 tgtcggtgat gcgaccttcg aagttgtcga ccttgaccat gtcgccgatg cgcaggctgc
       61 gctcggcgag gatgacgaag ccgctgacgt agttcgcggc gatcttctgc agaccgaacc
      121 cgaggccgac accgatcgca ccgccgagca ccgagagcgc ggtcaggtcg atgccgaccg
      181 ccgacaacgc gagcagaagg ccgacgagga ggagcagcgc gcgcacgatg ttcgccgcca
      241 tcttgcggat cgacaggtcg ctgccggtgc cgctcaggag cttcttctcg atcgccgccg
      301 aaatccacag cgcgagcacg agcaccacgc cggcggtcaa cgtgccttcg acgacgttgc
      361 gcagggtgac gtgagccgcg ccgaccttcc agcgcacatc gtccatcgcg tcgagcatca
      421 gcgggaagat gccggtgacc cacagcacca ccgcgatcca ggccagccat gagatgctgc
      481 gctcgaggat ccgcacccag ggcgtgttgg gaaacgtggc gctgagcacg cgcacgctga
      541 gccggatcag caccagcgag atcaggatcg ggatcgcgag cctgaagacg gccggcttca
      601 ggatgccttc gagcgccagc cgcgcaccga acgcgaaggc gagcgcgagg accgggaaca
      661 ggacgccgtc gacgatccgg tcgccgaacc agatcgaggc gaccgggatc gatcggcccc
      721 gcaccagacg gacgacacac catgcagcga ccaggcatcc cgccaggatc gcgccttcgg
      781 tgagcgccgc cggctgctcc agcgagcgca gcagatcctc gagatcgtgc gcgtcgagcg
      841 tccgcaccat cagggcccgc tagacgcccg ccagcacgcg cacgtgcgcc gccacgctgc
      901 gcgccagcgc accgaggttg tagccgccct ccaagcacga gacgatgcga cccttcgcgt
      961 ggcggtcggc gacggcctta acgcgctgcg tgatccactc gtagtcggcc tcgaccaggc
     1021 cgagctgccc gaggtcgtct tcgcgatgcg catcgaatcc ggccgagatg aagatcatct
     1081 gcggccggaa ggcctcgagg cgcggcatcc agttggcctc gatcagctcg cgcaccgcgc
     1141 cgccacgcga ataggccgga atcggcacgt tgaccatgtt ggtgcccatc ggcacgccgc
     1201 cgctgtacgg gtagagcggg tgctggaaga tgctcaccat cagcacgcgc tcgtcgccgg
     1261 cgatgatgtc ttcggtgccg ttgccatggt gcacgtcgaa gtcgacgatc gcgacccgct
     1321 cgagccggcg tctgtcgagc gcatgtcggg ccgcgaccgc gacgttgttg aaaaagcaga
     1381 agcccatcgc ggcgtcgcgt gtcgcatggt ggcccggcgg gcgcaccgaa cagaacgcgt
     1441 tctcgacgct gccgtcgatc accgcatcgg tcgcggcgac cgccgcgccg gccgcgcaca
     1501 gcgcggcatt ccaggtgccg gggccggcga tggtgtcggg atcgatcgcg cgcggttcgc
     1561 cggatgcgct cacctgcgcg agcaactcgc gcagctcgct cacgtggccg ctgctgtggg
     1621 cgagcaccag atcggcgagg tccaccgggg gcgcctcgcg ccggtcgagc gcatcggcca
     1681 ggccactggc aatcaggtag tcgt
//
LOCUS       DASVHM010000760         5522 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1424674, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000760 DASVHM010000000
VERSION     DASVHM010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5522
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1424674"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..223)
                     /locus_tag="VF308_13990"
     CDS             complement(<1..223)
                     /locus_tag="VF308_13990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437814.1"
                     /translation="MPQRRPLALFRLVRAASACGCGAVVVGCAVVPDDVDLGHAAIVP
                     GTTTTRFVVNGSTSAGRGAGTGAAGGAGGG"
     gene            316..2205
                     /locus_tag="VF308_13995"
     CDS             316..2205
                     /locus_tag="VF308_13995"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M61"
                     /protein_id="HEX7437815.1"
                     /translation="MHRTCGIALCGAFAAGLAFAQPLPPARDVPYLGPITLQVDATDV
                     EHKILQVVETLPVRAGPLLLLYPEWIPGDHSPTNQVKRLAGLRVSAAGKTVPWTRDPA
                     HLQAFRVDVPAGVSSLELRFQHLLSLHEDGYSSVLTRKLGAVAFQGTVLYPAGHDVSR
                     IEVDASVRFPAGWKQAGALRAVAESEGWVKYERVSLETLVDSPVYAGRHLRRIDLDGG
                     ASRPVFLDVFAEDADSLAATEEQIEIHRNIVRQADRLFGVRHFAHYDILLALGEEVTS
                     LGLEHAQSSENSAKAGYFTDWKNSALARYIVPHEFVHSWNGKFRRPGDLWAPDFNTPT
                     RNSLLWVYEGQTEYWGDVLAARSGMYTIEEARERLAYTVAWLQAHPGRSWRSVQDTTY
                     DPITMGRQLSLDWNSWQRFEDYYDEGALIWLGADTRIRELSGGERSLDDFARAFFGVQ
                     DGRVAPLLYDFDDVVRTLGAVQPFDWARLLKAQVEGINGAAPLDGLTRSGWRLAWTEK
                     QGEWAKAADAYRESADFRYSIGIRIGKEGKIAQVMWESPAFRAGLASGPTLLAVNSQE
                     YKPELLRAAITAAKERAEPLELLVKDGSEYRTVRIDYRGGLRHPTLERIEATQDWLTP
                     ILSPR"
     gene            complement(2236..4020)
                     /locus_tag="VF308_14000"
     CDS             complement(2236..4020)
                     /locus_tag="VF308_14000"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7437816.1"
                     /translation="MTETELRKLVEAVRCGRLPRRLFVERMLSLGLSVPMAGLMLIQA
                     RVAAAQPSFAYKPAKRGGGGNLRMLEWQGPTLLNPHFATGIKDFFGSRIFYEPLAQWD
                     ADGNLEPVLAAGIPSRENGGLAADGRSVVWKLKPGVTWHDGQPFTADDVVFNWQYAID
                     AAAATVSAGSYRNLKIEKIDSHTVRVVFAAASPFWPGQYSQVLLVPRHLFAAFGGAKS
                     RESPNNNKPVGTGAYTFVEFKPGDLLRAALNPRYHEANRPHFDTLELKGGGDPTSAAR
                     AVLQTGEYDYASSLLVEDDVLKRMEAGGKGRVQFLRGSATAAIYLNHANPALEVDGER
                     SNPKTRHPLFSDARVRRAVGLLIDRQSIETYVYGRLGKATTNYINNPPRYRSANTTSE
                     FNIGKANAMLDAAGWKPGADGVREKGGKRLTLLFQASIGTVAQKLQAVVKQAAQKAGI
                     EMELKGVVSSVFFSSDIGNTDTYGKFYADIQTYNWSNDSPDPEGLMQSFVSWEVCSKA
                     NKWLGLNLVRWQNGEFDALFRAAETELDPVKRAALFIRMNDLVVGDGYVLPIIDRTTA
                     RALNRRLVAPLSGWQSDMASLPHWYREA"
     gene            4123..4548
                     /locus_tag="VF308_14005"
     CDS             4123..4548
                     /locus_tag="VF308_14005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437817.1"
                     /translation="MAKSIQSPAYGPVHVGRIVALPTSRLSTPAELYTVPAGMRLVIE
                     YVSFACTAKVHDDHAVVRLRIGSTLRGESVWHDVNTLSGSNDWSGASQLVRIYADPQT
                     VVHALVDRVFRPPSTARISFSGQLERLSPVRPGRKLSQL"
     gene            complement(4604..>5522)
                     /locus_tag="VF308_14010"
     CDS             complement(4604..>5522)
                     /locus_tag="VF308_14010"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7437818.1"
                     /translation="GLRKSIALYGQAITVDPSYALAHVGLAEALRETMLASDALPASV
                     SEPARAAIQRALTLAPNLGEALAEKGYSLYFFEFDWPGAEREFRRALSFNPNAAVAHF
                     GLAQLLLTQDRPAEGFVHLRRARELDPMSPFFNTLEAGYLFASGRRAEAHARLQRAFD
                     IAPDFFLALRTLATMQLAEGQPEPAIALLRRAVAQAEGNSRPRAFLGMHLARLGRRDE
                     AREILDQLLQQAGTRYVPSFSLAVLHAALGENATAFDALEKAYAARDPQIVFLKDDPR
                     WVGLRHEPRFEALIRVMKLDRYGPGLSPS"
BASE COUNT          852 a         1878 c         1896 g          896 t
ORIGIN      
        1 cgccgcctcc cgcgccaccc gcggcgccgg tgcccgcacc gcggcccgcg ctggtggaac
       61 cgttgacgac gaaccgagtg gtggtggtgc cgggaacgat cgcagcgtgg ccgaggtcga
      121 cgtcgtcggg cacgacggca cagcccacga cgacggcgcc gcagccgcac gccgatgccg
      181 cgcggacgag ccggaagagg gcgagcgggc ggcgctgcgg catgagatgc gcgactgtgc
      241 gtcggaaggg ctggcggggt caatcgcatc gagcgcggcg gccacaatgc cggcctggaa
      301 gccacaggga acgccatgca tcggacttgc ggtatcgcgc tgtgcggagc attcgccgcg
      361 ggccttgcct tcgcccagcc gcttccgccg gcgcgcgacg ttccctacct cggtccgatc
      421 acgctgcagg tcgatgccac cgacgtcgag cacaagatcc tgcaggtcgt cgagacgctc
      481 ccggtccggg cgggcccact gctgttgctg tatccggaat ggattccggg cgaccactcg
      541 cccaccaacc aggtgaagcg cctcgccggt ctgcgcgtca gtgcggcggg gaaaaccgtt
      601 ccctggaccc gcgatcccgc tcacctgcag gcctttcgcg tcgacgttcc cgccggcgtg
      661 tcctcgctcg agctgcgctt ccagcacctg ctgtcgttgc atgaagacgg ctattcgtcg
      721 gtcctcacgc gcaagctggg cgcggtcgcg ttccagggaa ccgtgctcta tcccgcgggt
      781 cacgacgtct cgcggatcga ggtcgatgcc agcgtgcgat ttcctgccgg ctggaagcag
      841 gccggtgccc tgcgcgccgt cgccgaatcg gaaggctggg tgaaatacga gcgcgtctcg
      901 ctggagacgc tcgtcgattc gcccgtctat gccggccgcc atctgcgccg catcgatctc
      961 gatggcggcg cgagccggcc ggtgttcctc gacgtcttcg cggaagacgc ggactcgctg
     1021 gcggccaccg aggagcagat cgagatccat cgcaacatcg ttcgccaggc cgaccgtctc
     1081 ttcggcgtgc gccacttcgc gcactacgac atcctgctcg cgctcggcga ggaggtgacc
     1141 tcgctcggcc tcgagcacgc gcagtcgagc gagaacagcg ccaaggcggg ctacttcacc
     1201 gactggaaga acagcgccct ggcgcgctac atcgtcccgc acgagttcgt gcactcgtgg
     1261 aacggcaagt tccgccggcc gggcgacctg tgggccccgg acttcaacac gccgacgcgc
     1321 aacagcctgc tgtgggtgta cgaagggcag accgagtact ggggcgacgt gctggccgcg
     1381 cgcagcggca tgtacacgat cgaggaagcg cgcgagcggc tcgcctacac cgtcgcctgg
     1441 ctgcaggccc atcctggccg cagctggcgc agcgtgcagg acacgacgta cgaccccatc
     1501 acgatggggc gccagctgtc gctcgactgg aacagctggc agcgcttcga ggactactac
     1561 gacgaaggcg cgttgatctg gctcggcgcc gacacgcgca tccgcgagct ttccggcggc
     1621 gagcgttcgc tcgacgactt cgcgcgcgca ttcttcggcg tgcaggacgg ccgcgtcgca
     1681 ccgctcctgt acgacttcga cgacgtcgtg cgaacgctcg gcgccgtcca gcctttcgac
     1741 tgggcgcggc tgctcaaggc gcaggtcgaa ggcatcaacg gcgcggcgcc gctcgacggt
     1801 ctgacgcggt cgggctggcg gctcgcctgg accgagaagc agggggagtg ggccaaggcg
     1861 gccgacgcct atcgcgagtc ggcggacttc cgctactcga tcggaatccg catcggcaag
     1921 gagggaaaga tcgcacaggt gatgtgggag agcccggcgt ttcgcgccgg cctcgccagc
     1981 gggccgacct tgctcgccgt caactcgcag gagtacaagc ccgagctcct gcgcgcggcg
     2041 atcaccgccg ccaaggagcg cgcggagccc ctcgagctcc tcgtcaagga cggctcggag
     2101 taccgcaccg tccggatcga ctaccggggc ggccttcgcc atccgacgct cgagaggatc
     2161 gaggcaaccc aggactggct cacgccgatc ctctcgccgc gttgaagccg tgcgggcttc
     2221 gctggacggg tcgcctcagg cttcgcgata ccagtgggga agcgatgcca tgtcgctctg
     2281 ccagccggac aagggcgcca cgaggcgacg attcagggcc cgggcggtgg tgcggtcgat
     2341 gatcggcagc acgtagccgt cgccgacgac gaggtcgttc atcctgatga agagggcggc
     2401 acgcttgacc ggatccagct cggtttcggc ggcgcggaac agcgcgtcga attcgccgtt
     2461 ctgccagcgc accaggttca ggccgagcca cttgttggcc ttcgaacaga cctcccacga
     2521 cacgaaggac tgcatcagcc cttcgggatc cgggctgtcg ttgctccagt tgtacgtctg
     2581 gatgtcggcg tagaacttgc cgtacgtgtc ggtgttgccg atgtccgacg agaaaaacac
     2641 gctggacacg acgcccttga gctccatctc gatgccggcc ttctgggccg cctgcttgac
     2701 gaccgcctgc agcttctgcg ccaccgtgcc gatggaggcc tggaacaaca gcgtcagtct
     2761 cttgccgcct ttctcgcgca cgccatcggc gccgggcttc cagccggccg cgtcgagcat
     2821 cgcgttggcc ttgccgatgt tgaattccga cgtggtgttg gcgctccgat aacgtggcgg
     2881 gttgttgatg tagttggtcg tcgccttgcc cagtcggccg taaacatagg tctcgatgct
     2941 ctggcgatcg atgagcagtc cgaccgcgcg gcgcacccgg gcatcgctga acagcggatg
     3001 gcgcgtcttc ggattggacc gctcgccgtc gacctcgagc gccggattgg catggttcag
     3061 atagatcgcg gccgttgcgc tgccacgcag gaattgcact cgacccttgc cgcctgcttc
     3121 catgcgcttc agcacgtcgt cttcgacgag gagcgagctc gcgtagtcgt attcgccggt
     3181 ttgcagcacg gcccgcgcag ccgatgtcgg atcacccccg cccttcagct cgagcgtatc
     3241 gaagtggggg cggttggctt cgtgatagcg cggattcagg gccgctcgca gaaggtcgcc
     3301 cggcttgaac tcgacgaagg tgtaggcgcc ggtgccgacg ggcttgttgt tgttggggga
     3361 ctcgcgcgac ttcgcgccgc cgaaggccgc gaacaggtgt cgcggcacga gcagcacctg
     3421 cgaatactgg ccgggccaga acggcgaagc cgcggcgaag accacgcgca cggtgtgcga
     3481 gtcgatcttc tcgatcttga ggttgcggta actgcctgcg ctgacggtgg cggcggcggc
     3541 gtcgatcgcg tactgccagt tgaagacgac gtcgtccgcc gtgaacggct ggccgtcgtg
     3601 ccaggtcacg cccggcttga gcttccagac gacgctgcgg ccgtcggcgg ccaacccgcc
     3661 gttctcgcgg ctcgggatcc ccgccgcgag aaccggctcc aggttcccgt cagcgtccca
     3721 ctgcgcgagc ggctcgtaga agatgcgcga tccgaagaag tccttgatgc cggtcgcgaa
     3781 gtgcggattg agcagggtcg gcccttgcca ttcgagcatt cgcaggttgc cgccgccgcc
     3841 gcgcttcgca ggcttgtagg cgaacgacgg ctgggccgcc gcgacgcgcg cctggatcag
     3901 catcagcccg gccatgggca cgctgaggcc caggctcagc atgcgctcga cgaagagtcg
     3961 gcgcggcaac cgcccgcaac gcacggcctc gacgagcttc cgcagttccg tctcggtcat
     4021 cgagccccct cgttgccgcc agtggattcc tgtccgcgcc gtgagtcaac ggtgcggtga
     4081 gccagcacaa tgtcgctcgc acatcgacca gcgagatcgg ccatggccaa gagcatccag
     4141 tcccccgcct acggtcctgt tcatgtgggc aggatcgtcg cgctgccgac gagccgcctg
     4201 tcgacgccgg ccgagctcta cacggtgccc gccggcatgc gcctggtcat cgaatacgtc
     4261 tccttcgcct gcacggcgaa ggttcacgac gatcatgcgg tggtccgcct tcggatcgga
     4321 tcgacccttc ggggtgaaag cgtgtggcac gacgtcaaca cgctgtcggg atcgaacgac
     4381 tggtccggcg cctcgcagct cgtcaggatc tacgccgatc cgcagacggt cgtccatgcc
     4441 ctggtcgacc gggtcttccg tccgccttcg acggcccgga tctcgttcag cggtcagctg
     4501 gagcgcctgt ctccggtcag gccgggccgc aagctgagtc aactctgaat cgcggccgga
     4561 tcgcattgac ctcgagctcg agtctcagcc agccccgtat cggttagctc ggcgacaagc
     4621 ccggcccgta gcgatccagc ttcatcaccc ggatcagcgc ctcgaaccgc ggctcgtggc
     4681 gcaggccgac ccagcgcggg tcgtccttca ggaagacgat ctgcgggtcg cgcgcggcgt
     4741 aggccttctc gagcgcgtcg aaggcggtcg cgttctcgcc cagcgccgca tgcagcaccg
     4801 ccagcgagaa cgacggcaca tagcgcgtgc cggcctgctg cagcagctgg tcgaggatct
     4861 cgcgcgcttc gtcgcggcga cccagacgcg cgaggtgcat gcccaggaac gcgcgcggcc
     4921 ggctgttgcc ctcggcttgc gcgacggcac gccgcaggag cgcgatcgcc ggctcgggct
     4981 ggccctcggc cagttgcatc gtggccagtg tccggagcgc gagaaagaag tccggagcga
     5041 tgtcgaaggc gcgctgcagt cgggcgtggg cctctgcgcg ccggccgctc gcgaagagat
     5101 agccggcctc gagcgtattg aagaaaggcg acatcgggtc gagctcgcgc gcccggcgca
     5161 ggtggacgaa gccctctgcc ggccggtctt gggtgagcag cagctgcgcc aggccgaagt
     5221 gcgccacggc cgcgttgggg ttgaacgaca gcgcgcgccg gaactcgcgc tctgcaccgg
     5281 gccagtcgaa ttcgaagaag tagaggctgt agcccttctc cgcgagagct tcgcccaggt
     5341 tcggcgccag cgtcagggcg cgctggatcg ctgcccgagc gggttcggac acgctggcag
     5401 gcagggcgtc ggaggcgagc atcgtttcgc gcagcgcttc ggccaggccg acgtgggcca
     5461 gcgcgtacga cgggtccacc gtgatcgcct gcccgtagag cgcgatgctc ttgcgcaggc
     5521 ct
//
LOCUS       DASVHM010000761         7420 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_271066, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000761 DASVHM010000000
VERSION     DASVHM010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7420
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271066"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..461)
                     /gene="icmH"
                     /locus_tag="VF308_14015"
     CDS             complement(<1..461)
                     /gene="icmH"
                     /locus_tag="VF308_14015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system protein IcmH/DotU"
                     /protein_id="HEX7437819.1"
                     /translation="MDPSAVNDPFADRDEQTRTFIKPDPRGRGTASRSAETTTIDGAG
                     PDAAIADVGLNPLVALANRLLLLVPQLRATRQVADPAALRTSLAQGIRDFAARAAAQG
                     IAPERVMASRYVLCTMIDEAASDTPWGGSGVWGRHSLLAMFHNETEGGEKV"
     gene            complement(480..1814)
                     /gene="tssK"
                     /locus_tag="VF308_14020"
     CDS             complement(480..1814)
                     /gene="tssK"
                     /locus_tag="VF308_14020"
                     /inference="COORDINATES: protein motif:HMM:TIGR03353.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssK"
                     /protein_id="HEX7437820.1"
                     /translation="MSLHSKVVWSQGMFLLPHHFQQEARHVEYTIDMRMRSTGPHGWG
                     FFELALDAGMLAIGRVGIARASGILPDGTPFSIPLHDAQPMALDVPADMKGELVCLAV
                     PLAREGVTQVGFDDAEAHELRRWKADSEELRDHTNAADEPEAVQTGALDLRLVRAKEA
                     GDGYALIGVARVVERRSDNQVQLDPLYIAPQTRIDATQQLSAHATLLHGLIHQRTRAF
                     AARMGQLSHGISEMADFLMLQALNRAEPVFRQHALAPNTHPKELYLACLQLAGDLSTF
                     TSEARFSNEYPPYRHDDLHATFVPVIADLRRMLSTVLERNAIQIELVDRSHGVRTAVF
                     PDAELARTASFVLAVNAQMPAEQLRSRFPAQSKLGPSDKLRDLVNLQLPGVVLRSLPT
                     APRQLPFHAGFHYFELDRGGELWKQLEKSGSLALHVAGDFPALELELWAIRQ"
     gene            complement(1828..2292)
                     /gene="tssJ"
                     /locus_tag="VF308_14025"
     CDS             complement(1828..2292)
                     /gene="tssJ"
                     /locus_tag="VF308_14025"
                     /inference="COORDINATES: protein motif:HMM:TIGR03352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system lipoprotein TssJ"
                     /protein_id="HEX7437821.1"
                     /translation="MRIFGLHPVAALGVALLLSACAGPPKPASVTGTIQASAQINPSA
                     SKRPSPLLIRIYELKSAAAFNAADFMSLYQRDQAELAADLLAKEEFVLSPGETKTFAK
                     TLAPDTRFLGVVAAYRDLEHAKWRSVVAIQPSQPQKVTVKAGELAVEAAISK"
     gene            complement(2355..2558)
                     /gene="yacG"
                     /locus_tag="VF308_14030"
     CDS             complement(2355..2558)
                     /gene="yacG"
                     /locus_tag="VF308_14030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009516501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HEX7437822.1"
                     /translation="MTDAPFRTRIVRCPTCGGEAVYALGNPCRPFCSPRCKNNDFGAW
                     ASEAYGVEAKPSEDDDPDADAIT"
     gene            complement(2573..3328)
                     /gene="zapD"
                     /locus_tag="VF308_14035"
     CDS             complement(2573..3328)
                     /gene="zapD"
                     /locus_tag="VF308_14035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007854534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapD"
                     /protein_id="HEX7437823.1"
                     /translation="MIVYEYPLNESIRTMLRLEHLFDRLGQLIERDAPVDHHHALATI
                     FEIMDVGSRADLKSDLLKELERHRQHLLGYRGNPAISEAALEATLARIDGAFARLNQV
                     SGKAGAALTANEWLMSIRSRISIPGGTCEFDLPAYYAWQQLDATRRRSDLLQWVGTLM
                     PLAEALQVLLGLLRDSGAPQQVVAAGGQYSQSLPAGRVYQLMRVRIKKALQLVPEISG
                     HRLMMLVRLMRQEADGRLRPSDADCSFELTLCA"
     gene            complement(3427..4038)
                     /gene="coaE"
                     /locus_tag="VF308_14040"
     CDS             complement(3427..4038)
                     /gene="coaE"
                     /locus_tag="VF308_14040"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345584.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEX7437824.1"
                     /translation="MTALRIGLTGGIGSGKSAVGAILAGLGAVVIDTDLIARQLTMPG
                     GAAIEAIGAAFGASFIGADGGLDRPRMRQAAFDDAGTRTRLEAILHPLIGIEVERQAA
                     LAAATAPALVFDVPLLVESGRWRSRVDAVWLVDCDEAVQIERVAARPGWSEESARAVI
                     AQQASRAARRAAADAVIHNQGISLAGLAAEVHALWGSALATRP"
     gene            complement(4070..4915)
                     /locus_tag="VF308_14045"
     CDS             complement(4070..4915)
                     /locus_tag="VF308_14045"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HEX7437825.1"
                     /translation="MPFADVFLSPFVLALFGLCIGSFLNVVIHRLPLMLERGWKMESA
                     DLLGVAHEGAPAITLSTPRSRCPSCGHAIAWYENIPVASWLWLRARCSACRAPISARY
                     PLVEVATAVLFALVGWRFGAEPVALLWCFFCAVLVALAGIDWDTTLLPDNLTLPLLWA
                     GLASAALGWTIPLPDAVWGAIVGYLSLWSVYWLFKLTTGKEGMGFGDFKLLAALGAWL
                     GWKMILPIVLGASVIGAIVGIVMKLSSALREGRYVPFGPFLAGAGLVVLFAGPERVLG
                     WLRWS"
     gene            complement(4923..6146)
                     /locus_tag="VF308_14050"
     CDS             complement(4923..6146)
                     /locus_tag="VF308_14050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007868021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEX7437826.1"
                     /translation="MATALAAKQRIKDIVFEWEGKDKNGKAVRGEMRAGGEAMVSASL
                     RRQGVMVNKVKKRRMSGGKAIKQKDIAVFTRQLSTMMRAGVPLIQSFDIVARGSTNPK
                     MTRLLTDIRSDVETGTSLSAAFRKHPLYFDALYCNLVEAGEAGGILETLLDRLAVYQE
                     KTMAIKNKIKSALIYPVAVLVVAFVVLTVIMIFVIPAFEDVFKSFGADLPAPTLVVIA
                     LSKFFTSYWYLIFGILGGGIYFFMQTWRRSVKMQKYMDRLLLRIPVFGDLVNKSSIAR
                     WTRTLSTMFAAGVPLVEALDSVGGASGNAVFAEATEKIQKDVSTGSALTTSMQATGVF
                     PVMVLQMCAIGEESGSLDAMLGKAAEFYEDEVDEAVKGLSSLMEPFIIVILGTLIGGI
                     VVSMYLPIFTLGQVV"
     gene            complement(6188..>7420)
                     /gene="pilB"
                     /locus_tag="VF308_14055"
     CDS             complement(6188..>7420)
                     /gene="pilB"
                     /locus_tag="VF308_14055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012655751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV-A pilus assembly ATPase PilB"
                     /protein_id="HEX7437827.1"
                     /translation="DFEFDVTDDVTAPQEATEVMTEVEDAPVVRFLQKMLIDAINLRA
                     SDLHFEPYEYHYRVRFRIDGELREITQPPIAIKDKLSSRIKVISRLDIAEKRVPQDGR
                     MKLKFGTKAIDFRVSTLPTLFGEKIVIRILDPSSAKVGIEALGYEKIEKDRLLKIIQR
                     PYGMVLVTGPTGSGKTVSLYTCLNILNQPGVNISTVEDPAEINLPGVNQVNVNDKAGL
                     SFAVALKSFLRQDPDIIMVGEIRDLETADIAIKAAQTGHMVMSTLHTNDAPTTLTRLA
                     NMGVAAFNIAASVLLITAQRLTRKLCENCKVAADYPRDAMLKAGFKPEDLDGNWNPFR
                     AVGCSMCNNGYKGRVGIYQVMPISDEIQRIILASGGATDIAVQAQREGVRDLRQSGLL
                     KVRSGMTTLEEVISVTNE"
BASE COUNT         1192 a         2404 c         2639 g         1185 t
ORIGIN      
        1 aagaccttct cgccgccctc ggtctcgttg tggaacatcg ccagcaggct gtgccgaccc
       61 cagacgcccg agcctcccca gggcgtgtcg gacgcggcct cgtcgatcat cgtgcacagc
      121 acgtagcgtg acgccatcac gcgttccggc gcgatcccct gcgcggcggc gcgcgcggcg
      181 aagtcgcgga tgccctgtgc gagcgaggtg cgcagcgccg ccggatcggc gacctggcgc
      241 gtcgcgcgca gctgcggcac gagcagcagc agccggttgg ccagggcgac gagcggattc
      301 aggccgacat cggcgatcgc ggcgtcgggg cccgcaccgt cgatggtggt cgtctcggcc
      361 gaccgcgacg ccgtgccgcg accgcgcgga tcgggcttga tgaaggtgcg ggtctgctcg
      421 tcgcgatcgg cgaacggatc attgacagcc gagggatcca tgcaggggtc cccggcccgt
      481 cattggcgga tcgcccacag ctcgagctcg agcgcgggaa agtcgccggc gacgtgcagc
      541 gccaggctgc cgctcttctc gagctgcttc cacagctcgc cgccgcggtc gagctcgaag
      601 tagtgaaagc cggcgtggaa cggcagctgg cgcggcgccg tcggcagcga gcgcaggacg
      661 acgccgggca gctgcaggtt gacgagatcg cgcagcttgt cggagggccc gagcttcgac
      721 tgcgccggaa agcgcgagcg cagctgctcg gccggcatct gcgcgttgac cgcgagcacg
      781 aagctcgccg ttcgcgccag ctcggcgtcg gggaagacgg cggtgcgaac gccatgactg
      841 cggtcgacga gctcgatctg gatcgcgttc cgctcgagca ccgtcgacag catccggcgc
      901 aggtcggcga tgacgggaac gaaggtcgcg tggagatcgt cgtggcgata gggcgggtac
      961 tcgttcgaaa agcgcgcctc gctggtgaag gtcgacaggt cgccggcgag ctgcaggcag
     1021 gcgaggtaga gctccttcgg gtgcgtgttc ggcgccagcg cgtgctggcg aaacaccggc
     1081 tcggcgcggt tgagcgcctg cagcatcagg aagtcggcca tctccgagat gccgtggctg
     1141 agctggccca tgcgcgccgc gaacgcgcgc gttcgctggt ggatgaggcc gtgcagcagc
     1201 gtcgcgtgcg ccgagagctg ctgggtggcg tcgatgcgtg tctgcggcgc gatgtagagc
     1261 gggtcgagct ggacctggtt gtcgctgcgc cgttccacga cgcgggcgac gccgatgagc
     1321 gcatagccat caccggcctc cttggcgcga acgaggcgca ggtcgagggc gccggtctgc
     1381 accgcctcgg gctcgtcggc ggcgttggta tggtcgcgca gctcctcgct gtcggccttc
     1441 cagcgacgca gctcgtgcgc ctcggcgtcg tcgaagccga cctgcgtgac gccctcgcgc
     1501 gcgagcggga cggcgaggca gacgagctcg cccttcatgt cggcgggcac gtccagcgcc
     1561 atcggctggg catcgtgcag cgggatcgag aacggcgtgc cgtcgggcag gatgccgctg
     1621 gcgcgggcga tgccgacgcg gccgatcgcc agcatgccgg cgtcgagcgc gagctcgaag
     1681 aagccccagc cgtgcggccc cgtgctgcgc atgcgcatgt cgatcgtgta ctcgacgtgc
     1741 cgggcctcct gctgaaagtg atgcggcagc aggaacatcc cctgcgacca gacgaccttg
     1801 ctgtgcagac tcatgaggcg cgtgaggtca cttgctgatc gccgcttcga cggcgagctc
     1861 gccggccttc accgtgacct tctgcggctg gctcggctgg atcgcgacga cgctgcgcca
     1921 cttggcatgc tcgaggtcgc ggtaggcggc gacgacgccg aggaatcggg tgtcgggggc
     1981 gagcgtcttg gcgaaggtct tggtctcgcc gggcgaaaga acgaactctt ccttggcgag
     2041 aagatcggcg gcgagctcgg cctggtcgcg ttgatagagc gacatgaagt ctgccgcgtt
     2101 gaaggccgcg gccgacttca gctcgtagat gcggatgagg agcggcgaag gccgcttgct
     2161 cgcgctcggg ttgatctgcg ccgaggcctg gatcgtgccc gtgaccgacg ccggcttggg
     2221 cgggccggcg cacgccgaca ggagcaacgc gacgcccagc gccgccaccg ggtgcaggcc
     2281 aaagattctc acgcgcgcat ctcccatcgt tcggccaagg agcatagcga caggccgcgc
     2341 cgcgacctcg tgacttaggt aatcgcgtcg gcgtcggggt cgtcgtcctc gctcggcttc
     2401 gcttcgacgc cgtaggcctc gctcgcccag gcgccgaaat cgttgttctt gcagcgcggg
     2461 ctgcagaacg gccggcacgg attgccgagc gcatagaccg cttcgccgcc gcaggtcggg
     2521 cagcggacga tacgggtgcg gaacggcgcg tcggtcatcg cagaacctgc gctcaggcgc
     2581 aaagcgtgag ctcgaagctg cagtcggcgt cgctcggcct gaggcgcccg tcggcttcct
     2641 ggcgcatcag gcgaaccagc atcatcaggc ggtggccgct gatctcggga acgagctgca
     2701 aggccttctt gatccgcacc cgcatcagct ggtagacacg gccggccggc aggctttgcg
     2761 agtactgtcc gccggctgcg acgacttgct gcggtgcgcc cgagtcgcgc agcagcccga
     2821 gcaggacctg caaggcttcg gcgagcggca tcagcgtccc gacccattgc agcaggtcgc
     2881 ttcgtcgccg cgtcgcgtcg agctgctgcc acgcgtagta ggcggggagg tcgaactcgc
     2941 acgtgccgcc gggaatgctg atgcgactcc tgatgctcat cagccactcg ttggcggtga
     3001 gcgcggcgcc ggccttgccg gagacctggt tgaggcgcgc gaacgcaccg tcgatgcgcg
     3061 ccagcgtggc ctcgagtgcg gcctccgaga tggccgggtt gccgcgatag ccgagcaggt
     3121 gctggcgatg cctctcgagc tccttcagca ggtcggactt gaggtcggcg cgcgagccga
     3181 cgtccatgat ctcgaagatc gtcgcgagcg cgtgatggtg gtcgaccggc gcgtcgcgct
     3241 cgatcagctg gccgagccgg tcgaacagat gctcgagacg gagcatcgtc cggatgctct
     3301 cgttcaacgg gtactcgtaa acgatcaagg ggagggcagg tcggaagccg cgggcaggga
     3361 gaccgccgtg agaccggtgg ccgcgcggat tgtttcatag cgaaccggcg ccgcgcgggc
     3421 gcgcggtcat ggccgggtcg cgagcgcgga cccccagagg gcgtggactt cggcggcgag
     3481 cccggccagc gagatgccct ggttgtggat caccgcgtcg gcggcggcgc gccgtgctgc
     3541 gcgcgaggcc tgctgggcga tcaccgcgcg cgccgactcc tcgctccagc cgggccgggc
     3601 ggcgacgcgc tcgatctgca cggcctcgtc gcagtcgacc agccagaccg cgtcgacgcg
     3661 gctgcgccag cgtccggatt cgaccagcaa cggcacgtcg aagaccagcg ccggcgcggt
     3721 cgcggcggcg agggcggcct ggcgctcgac ctcgatgccg atcagcggat ggaggatcgc
     3781 ctcgaggcgc gttcgcgtgc cggcgtcgtc gaacgcggcc tggcgcatgc gcggccggtc
     3841 gaggccgccg tcggcgccga tgaagctcgc gccgaaggcg gcgccgatcg cctcgatcgc
     3901 ggcgccgccc ggcatcgtca gctggcgcgc gatgagatcg gtgtcgatga ccacggcgcc
     3961 gaggccggcg aggatcgcgc cgaccgcgct cttgccgctg ccgatgccgc cggtgagacc
     4021 gatgcgcaag gcggtcattc gagcactggc gattgacgcg aggccggccc taggaccagc
     4081 gcagccagcc gaggacgcgc tcgggcccgg cgaacaggac caccagcccg gcgccggcga
     4141 ggaaggggcc gaacggcacg tagcggccct cgcgcaaggc ggacgacagc ttcatgacga
     4201 tgccgacgat cgcgccgatc accgaggcgc cgaggacgat cggcaggatc atcttccagc
     4261 cgagccaggc gccgagcgcg gcgagaagct tgaagtcgcc gaagcccatg ccttccttgc
     4321 cggtcgtgag cttgaacagc cagtagaccg accagagcga gaggtagccg acgatcgcgc
     4381 cccagaccgc gtcgggcagg gggatcgtcc agccgagcgc cgcgcttgcc aggccggccc
     4441 agaggagcgg cagggtgagg ttgtcgggga gcagggtggt gtcccagtcg atgccggcga
     4501 gcgcgaccag gacggcgcag aagaagcacc acagcaaggc gaccggctcg gcgccgaagc
     4561 gccagccgac gagggcgaag aggaccgccg tcgcgacctc gacgagcgga tagcgggccg
     4621 agatcggcgc ccggcacgcc gagcagcgcg cgcgcagcca gagccagctc gccaccggaa
     4681 tgttctcgta ccaggcgatc gcatggccgc acgacggaca gcgcgagcgc ggcgtcgaca
     4741 gcgtgatcgc cggcgccccc tcgtgggcga cgccgagaag atcggcgctt tccatcttcc
     4801 aaccgcgctc gagcatgagc ggcaggcgat ggatgacgac gttcaggaag ctgccgatgc
     4861 agagcccgaa cagggccagg acgaaaggcg agaggaagac gtctgcgaag ggcatcggtg
     4921 ccctacacca cctggcccag cgtgaagatc ggcaggtaca tcgagacgac gatgccgccg
     4981 atcagggttc ccaggatgac gatgatgaac ggctccatca ggctcgacag gcccttgacg
     5041 gcctcgtcga cctcgtcctc gtagaactcc gccgccttgc cgagcatggc gtcgagcgag
     5101 ccggattcct cgccgatggc gcacatctgc agcaccatca ccgggaagac gccggtcgcc
     5161 tgcatcgagg tcgtgagcgc cgaaccggtc gagacgtcct tctggatctt ctcggtcgcc
     5221 tcggcgaaga ccgcgttgcc cgaggcgccg ccgacggaat cgagcgcctc gacgagcggc
     5281 acgccggcgg cgaacatcgt cgacagcgtc cgcgtccagc gcgcgatcga cgacttgttg
     5341 accaggtcgc cgaagaccgg gatgcgcagc aggagccgat ccatgtactt ctgcatcttg
     5401 accgagcggc gccacgtctg catgaagaag tagatgccgc cgcccaggat gccgaagatg
     5461 aggtaccagt acgacgtgaa gaacttcgac agcgcgatga cgaccagcgt cggcgccggc
     5521 aggtcggcgc cgaaggactt gaacacgtcc tcgaacgccg ggatgacgaa gatcatgatg
     5581 acggtgagga cgacgaacgc gaccaccagc acggcgaccg gatagatcag cgccgacttg
     5641 atcttgttct tgatcgccat cgtcttttcc tggtagacgg caagacgatc gagcagggtt
     5701 tccaggatac cgcccgcctc gccggcctcg accaggttgc agtagagggc gtcgaagtag
     5761 agcgggtgct tgcggaacgc cgccgagagg ctggtgccgg tctcgacgtc ggagcggatg
     5821 tcggtgagca gccgcgtcat cttcgggttc gtgctgccgc gggcgacgat gtcgaacgac
     5881 tggatcagcg gcacgccggc gcgcatcatg gtcgagagct ggcgggtgaa gacggcgatg
     5941 tccttctgct tgatcgcctt gccgccgctc atgcggcgct tcttgacctt gttgaccatc
     6001 acgccctggc ggcgcaggct cgcactcacc atggcttcgc cgccggcacg catctcgccg
     6061 cgaaccgcct tgccgttctt gtccttgcct tcccactcga agacgatgtc cttgattcgc
     6121 tgcttcgcag ccagtgccgt tgccatatcg tctccgagga cctcttttcg ccttgcgatt
     6181 gtcgccgcta ctcgttggtg accgagatca cctcttcgag tgtcgtcatt cccgagcgaa
     6241 ccttgagcag acctgactgc cgaagatcgc gaacgccttc gcgttgtgcc tgtaccgcga
     6301 tgtcagtcgc cccgccggag gccaggatga tccgctggat ctcgtcgctg atcggcatga
     6361 cctggtaaat gccgacgcgc cccttgtaac cgttgttgca catcgagcag ccgacagcgc
     6421 gaaacggatt ccagttgccg tcgagatctt ctggcttgaa gccggccttg agcatcgcgt
     6481 cgcgaggata gtcggccgcc accttgcagt tctcgcaaag ctttctcgtc aggcgctgtg
     6541 ccgtgatcag caacacgctt gccgcgatgt tgaaggcggc gacgcccatg ttggcgaggc
     6601 gcgtcagcgt cgtcggcgcg tcgttggtgt gcagcgtcga catcaccatg tggccggtct
     6661 gtgccgcctt gatcgcgatg tcggcggttt cgaggtcgcg gatttcgccg accatgatga
     6721 tgtccggatc ttggcgcagg aacgacttga gtgcgaccgc gaaactgagg ccggccttgt
     6781 cgttgacgtt gacctggttg acgccgggca ggttgatttc agccgggtct tcgacggtcg
     6841 aaatgttgac gcccggctga ttcaggatgt tcagacaggt gtagagcgag accgtcttgc
     6901 cgctgccggt cggcccggtc acgagcacca tgccgtaggg ccgctggata atcttgagca
     6961 ggcggtcctt ttcgatcttt tcgtagccga gcgcctcgat gccgaccttt gcgctcgacg
     7021 gatcgagaat ccggatcacg atcttttcgc cgaagagcgt cggcagcgta ctcacccgaa
     7081 agtcgatcgc cttggtgccg aacttgagtt tcatgcgccc gtcctggggc acgcgctttt
     7141 cggcgatgtc caggcgcgag atcaccttga tgcgcgacga cagcttgtcc ttgatcgcga
     7201 tcggcggctg cgtgatctcg cgtagttcgc cgtcgatgcg aaagcgcacc cggtagtggt
     7261 attcgtaggg ctcgaagtgc aggtcggagg cgcgcaggtt gatcgcgtcg atgagcatct
     7321 tctggaggaa gcgcacgacc ggcgcgtcct cgacttcggt catgacctcg gtcgcttcct
     7381 gcggcgcggt gacgtcgtcg gtgacgtcga actcgaagtc
//
LOCUS       DASVHM010000762         3104 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_342413, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000762 DASVHM010000000
VERSION     DASVHM010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3104
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342413"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..413)
                     /locus_tag="VF308_14060"
     CDS             complement(<1..413)
                     /locus_tag="VF308_14060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX7437828.1"
                     /translation="MTLTELRYIVAVAREKHFGRAAEACFVSQPTLSVSIKKLEEELD
                     VRIFERGANEVSVTPLGAEIVRQAQSVIEQAAGIRETAKRRKDPLHGPLRLGVIYTIG
                     PYLLPDLVRQAIERVPQMPLMLQENFTAKLLDLLRT"
     gene            complement(410..1936)
                     /locus_tag="VF308_14065"
     CDS             complement(410..1936)
                     /locus_tag="VF308_14065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009516886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437829.1"
                     /translation="MNLAGILHQVGRRSPDAPAVSGAGLDLTFGQLCERSQRLAGALR
                     KGAGLGDGDRVVVCVENTPEFFELVFACWAAGLCAVPVNAKLHPNEVAHIARDCAARF
                     VFTSSGLATSLAGLKGEADAVRELVVVGGDRHAALLAADPIDVRSVAPDDVAWLFYTS
                     GTTGRPKGAMLTHRNLLFMCHCYYADIDRVTLGDTMLHAAPLSHGSGLYGLPHLFGGG
                     HQVVLGRFDAAEVFEALRRWPRVSFFAAPTMVSRLVNSPAATRADVSNLKTLCYGGAP
                     MYRADIEKALALFGPRLYHLYGQGESPMTITGLPQALHTGADAHARAARLASCGYART
                     GVEVRVVDAHEGPLAPGARGEIVTRSDCVMKGYWGNPEASAAALNGGWLHTGDIGSMD
                     RSGLLTLHDRSKDLIISGGSNIYPREVEEVLLLDPRILECAVVGRAHPDWGEEVVAFV
                     VCRADVHVGADELDALVTAHIARFKRPRAYRWVASLPKNNYGKILKTELRTMLARARE
                     "
     gene            complement(1952..>3104)
                     /locus_tag="VF308_14070"
     CDS             complement(1952..>3104)
                     /locus_tag="VF308_14070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003269677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437830.1"
                     /translation="ICARGENRTAQLYDIAKTLSPDDAINIQFTSGTTGSPKGATLSH
                     FNIINNARYCAKSMALGPGDRLCIPVPLYHCFGMVLGVLCAAASGATMVFPGEGFDAG
                     DTLKSVARHRCTALHGVPTMFTAMLDDPGFAQHDLSSLRTGIMAGAPCPIETMRKVIA
                     KMHMDQVTIAYGMTETSPISFQSSLDDPLERRVSTVGRIQPHLEVKIVDDAGRIVPVG
                     QRGELCTRGYAVMRGYWEDEARTREAIDAAGWMHTGDLATIDAEGYANIVGRVKDMLI
                     RGGENVYPREIEEYLLGHPGVQEVQVFGVPDPKYGEEVCAWVVPRHGHALDEEEIRAF
                     CRGRIAHYKVPRHVRIVEQFPLTATGKAQKFEMRKAMMESLGLQAQRTA"
BASE COUNT          460 a         1064 c         1060 g          520 t
ORIGIN      
        1 gtgcgcaaca ggtcgagcag cttggccgtg aaattctcct gcagcatcag cggcatttgc
       61 ggcacgcgct cgatcgcctg gcgcacgagg tcgggcaaca ggtacgggcc gatcgtgtag
      121 atcacgccga ggcgcagcgg cccgtgcagc gggtctttcc ggcgctttgc cgtctcgcgg
      181 atgcccgccg cctgttcgat caccgattgc gcctggcgca cgatctccgc gccgagcggc
      241 gtcacgctca cctcgttggc gccacgctcg aagatgcgca cgtcgagttc ctcctcgagc
      301 ttcttgatcg agacgctcag ggtcggctgc gacacgaaac aggcctccgc ggcgcgtccg
      361 aagtgctttt cccgggcgac tgcgacgatg tagcggagtt cggtcaatgt cattcgcgcg
      421 ctcgcgccag cattgtcctc aattcggtct tcaggatctt gccgtagttg ttcttcggca
      481 ggctcgcgac ccatcgatag gcgcgcggcc gcttgaagcg cgcgatgtgc gccgtcacga
      541 gcgcgtcgag ttcgtcggcg ccgacatgta cgtctgcacg gcagaccacg aatgcgacca
      601 cttcctcgcc ccagtcggga tgcgcgcggc cgaccaccgc gcattcgagg atgcgcgggt
      661 cgagcaggag cacctcctcg acttcgcgcg gatagatgtt gctgccgccg ctgatgatca
      721 ggtccttgga gcggtcgtgc agcgtgagca ggccgcttcg atccatcgag ccgatgtcgc
      781 cggtgtgcag ccagccgccg ttcagtgccg ccgcgctcgc ctccgggttg ccccagtagc
      841 ctttcatcac gcagtcgctg cgggtcacga tctcgccgcg cgcgccgggc gccagcggcc
      901 cctcgtgcgc gtcgacgacc cgcacttcga cgccggtgcg tgcatatccg cacgaggcga
      961 gccttgccgc gcgggcgtgc gcatcggcgc cggtatgcag agcctggggc aggccggtga
     1021 tcgtcatcgg cgattcgccc tggccgtaga ggtggtagag gcgcggcccg aagagcgcga
     1081 gcgccttttc gatgtcggcc ctgtacatgg gggcgccgcc gtagcagagc gtcttcagat
     1141 tcgagacgtc ggctctggtc gcggccgggc tgttgaccag gcgcgacacc atcgtcggcg
     1201 ccgcgaagaa cgacactcgg ggccagcgcc gcagcgcctc gaacacctcg gcggcgtcga
     1261 agcgaccgag gaccacctgg tggccgccgc cgaaaaggtg cggcaggcca tagaggcccg
     1321 agccgtgcga gaggggcgcc gcatgcagca tcgtgtcgcc gagggtcaca cgatcgatgt
     1381 cggcgtagta gcaatggcac atgaagagaa ggttgcggtg cgtcagcatc gcgcctttcg
     1441 ggcgtccggt ggtgccgctg gtgtagaaga gccaggcgac gtcgtccggc gcgacggatc
     1501 ggacgtcgat cgggtcggcc gcgagcaggg ccgcatggcg atcaccgccg accacgacga
     1561 gttcccgcac cgcgtcggcc tcgcctttga ggccggccag gctggtcgcc aggccgctcg
     1621 aggtgaagac gaaccgcgca gcgcagtcgc gcgcgatgtg cgcgacctcg ttcggatgca
     1681 gcttcgcatt gaccggcacc gcgcacaggc ccgcggccca gcacgcgaac accagttcga
     1741 agaactccgg cgtgttctcg acgcagacga cgacgcggtc gccgtcgccc agtcccgccc
     1801 ctttgcgcaa ggccccggcg agtcgttgcg agcgctcgca cagctgtccg aacgtgaggt
     1861 cgagcccggc gccactgacc gcgggcgcat cgggcgatcg gcgcccgacc tggtgcagga
     1921 tgccggcgag gttcaaggcc gtcgccgcgc gtcaggccgt gcgctgcgcc tgcaggccga
     1981 gagactccat catcgccttt ctcatctcga acttctgcgc cttgccggtc gccgtgagcg
     2041 ggaactgctc gacgatgcgc acatggcgcg gcaccttgta gtgcgcgatc cggcccctgc
     2101 agaacgcgcg gatctcttcc tcatccagcg cgtggccgtg cctcggcacg acccaggcgc
     2161 agacttcctc gccgtatttc gggtcgggca cgccgaacac ttgcacctcc tgcacgcccg
     2221 gatggcccag caggtattcc tcgatctcgc gcggatagac gttctcgccg ccgcggatca
     2281 gcatgtcctt gacgcgtccg acgatgtttg catagccctc ggcgtcgatc gtcgcgaggt
     2341 cgccggtgtg catccagccg gccgcatcga tcgcctcgcg cgtgcgcgcc tcgtcttccc
     2401 agtagccgcg catcaccgcg taaccgcggg tgcagagctc gccccgctgg ccgaccggca
     2461 cgatgcgtcc ggcgtcgtcg acgatcttga cctcgaggtg cggctggatc cggccgaccg
     2521 tcgagacgcg gcgctcgagc ggatcgtcca ggctcgactg gaacgagatc ggcgaggtct
     2581 cggtcatgcc gtaggcgatg gtgacttggt ccatgtgcat cttcgcgatc accttgcgca
     2641 tcgtctcgat cgggcatggc gcgccggcca tgatgccggt gcgcagcgac gacaggtcgt
     2701 gctgcgcgaa gcccgggtcg tcgagcatcg cggtgaacat cgtcggcacg ccgtgcagcg
     2761 cggtgcagcg gtgccgcgcc accgacttca gcgtgtcgcc ggcgtcgaag ccctcgcccg
     2821 ggaacaccat cgtcgcgccc gaggccgcgg cgcacagcac gccgagcacc atcccgaagc
     2881 agtggtagag cggcaccggg atgcagaggc ggtcgcccgg cccgagcgcc atgctcttcg
     2941 cgcaatagcg cgcgttgttg atgatgttga agtgcgacag cgtcgcgcct ttcggcgagc
     3001 ccgtcgtgcc gctcgtgaac tggatgttga tcgcgtcgtc cggcgaaagc gtcttggcga
     3061 tgtcgtagag ctgcgccgtg cggttttcac ccctggcgca aatg
//
LOCUS       DASVHM010000763         1607 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_705912, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000763 DASVHM010000000
VERSION     DASVHM010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_705912"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..513
                     /locus_tag="VF308_14075"
     CDS             <1..513
                     /locus_tag="VF308_14075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011851735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEX7437831.1"
                     /translation="MIERHTPQLVSWNGGGFDLPVLHYRGLRHGVVASQYWDMGEDDR
                     DFKWNNYISRYHLRHLDLMDLLAMYQPRASAPLDSMARLCGFPGKLGMDGAAVYPAYL
                     EGRTEEIRRYCETDALNTYLLYCRFQKMRGGFTEAEYAAEIAFVRQTLGGIDEPHWRE
                     YLAAWPDAVA"
     gene            complement(526..>1607)
                     /locus_tag="VF308_14080"
     CDS             complement(526..>1607)
                     /locus_tag="VF308_14080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018905837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEX7437832.1"
                     /translation="CERAGMRNPLVVSDAGVRAAGVLERAVQALGTLAHAVFDQTPSN
                     PTEAAVRAAVEVLNAQRCDGLVAVGGGSSIDLAKGAAIAATHEGPLKTYATIEGGSPK
                     IGARVLPLIAVPTTAGTGSEVARGAIVIVDDGRKLGFHSWHLVPKTAICDPELTLGLP
                     PFLTAATGMDAIAHCMETFMAPAVNPPADGIGLDGLERAWAHIERATRDGQDREARWN
                     MMSASMQGALAFQKGLGCVHSLSHSLGGVNPKLHHGTLNAMFLPAVVRFNAGAESMVK
                     DRRLARMAHAMGLTYCDARGSDLAAAIRAMNARLGLPTGLAAMGVTRDLYDRIIDGAM
                     ADHCHKTNPRLATREDYVQMLEASM"
BASE COUNT          231 a          568 c          551 g          257 t
ORIGIN      
        1 atgatcgagc ggcacacgcc gcagctcgtg agctggaacg gcggcggctt cgacctgccg
       61 gtgctgcact accggggtct gcgccacggc gtggtcgcgt cgcagtactg ggacatgggc
      121 gaggacgatc gcgacttcaa gtggaacaac tacatcagcc gctatcacct gcgccatctc
      181 gacctgatgg acctgctcgc gatgtaccag ccgcgtgcca gcgcgccgct cgattcgatg
      241 gcccggctct gcggctttcc cggcaagctc ggcatggacg gcgcggccgt ctacccggcc
      301 tacctcgaag gccggaccga ggagatccgg cgctattgcg agaccgacgc gctgaacacc
      361 tatctgctgt actgccgctt ccagaaaatg cgcggcggct tcaccgaggc cgaatacgcc
      421 gccgagatcg ccttcgtgcg ccagaccctc ggcggcatcg acgagccgca ctggcgcgag
      481 tacctggcgg cctggcccga cgcggtcgcg taggccgacc catcgctaca tcgaagcctc
      541 gagcatctgc acgtagtctt cgcgcgtcgc gaggcgcggg ttggtcttgt ggcaatgatc
      601 ggccatggcg ccgtcgatga tgcgatcgta gaggtcgcgg gtcacgccca tcgcggcgag
      661 accggtcggc aggccgaggc gcgcgttcat cgcgcggatc gcggcggcca gatccgatcc
      721 gcgcgcatcg cagtacgtca gtcccatcgc atgcgccatg cgggcgaggc gccggtcctt
      781 caccatcgac tcggcgcccg cattgaagcg gaccacggct ggcaggaaca tcgcgttcaa
      841 ggtgccgtgg tgcagtttcg gattcacgcc gccgaggctg tggctcaggc tgtgcacgca
      901 tcccagccct ttctggaacg ccagcgcgcc ctgcatgctc gcgctcatca tgttccagcg
      961 cgcctcgcga tcctggccgt cgcgcgtcgc gcgttcgatg tgcgcccacg cgcgctcgag
     1021 gccgtcgagg ccgatgccat cggcgggcgg gttcacggcc ggtgccatga aggtttccat
     1081 gcagtgcgcg atcgcgtcca tgccggtcgc ggcggtcagg aacggcggca gaccgagggt
     1141 cagctcgggg tcgcagatgg cggtcttcgg aactaggtgc cagctgtgga agccgagctt
     1201 gcgcccgtcg tcgacgatca cgatcgcgcc gcgcgccacc tcgctgccgg tgcccgccgt
     1261 cgtcggcacg gcgatcaggg gcagcacgcg cgcgccgatc ttcgggctgc cgccttcgat
     1321 cgtggcatag gtcttgagcg gcccctcatg ggtcgccgcg atcgccgcgc ccttggcgag
     1381 gtcgatgctc gacccgccgc cgacggcgac gagtccgtcg cagcgctgcg cgttcagcac
     1441 ttcgaccgcg gcgcgcaccg ccgcttcggt cggattcgac ggcgtctggt cgaacaccgc
     1501 atgcgccagc gtgccgagcg cctgcacggc tcgctcgagc acaccggccg cgcgcacgcc
     1561 ggcgtcggag acgaccagcg ggttgcgcat gccggcgcgc tcgcact
//
LOCUS       DASVHM010000764         2978 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1356663, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000764 DASVHM010000000
VERSION     DASVHM010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2978
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1356663"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..935)
                     /locus_tag="VF308_14085"
     CDS             complement(<1..935)
                     /locus_tag="VF308_14085"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEX7437833.1"
                     /translation="MSAQLRESYAGLERKVEQRTSELTEALEQQTATAEVLSVISGSI
                     ADSAPVFEKILERCAHLFSSSEQGVLILGEDQSVHLAAHRGAARDRLAPLFPSTQPPD
                     LETSIFSGRVLHYKDVLADADVPPGIRRIAERIGIGTYSQMFAPMVWEGRAIGTLYVT
                     RQPPTGFSDKEVGLLRTFADQAVIAIQNARLFNETREALRKVELRTAELSEALDYQTA
                     ISDVLRVISQSPTNVAPVFEAILDSAFRLFGNPVSAVFRYDGRFVHLAATRNWPAAAL
                     ADSKRFYPGPPNPKMMSGRVILSGRVQNEEDAFNDP"
     gene            complement(1128..1967)
                     /locus_tag="VF308_14090"
     CDS             complement(1128..1967)
                     /locus_tag="VF308_14090"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEX7437834.1"
                     /translation="MTRRWRLFPKYALLIITLVGSMLIASGAIGLYFSWRETEAHLVA
                     LQVEKAQNAATRIEQYVLDIEHQLSWTALPRADADGDALEQRRIEYLKLQRQAPAITE
                     VVWIDPNGREQLRISRLAMDAISSGTDMAQEEKFRVASKGGIYYGPVYFRKGTEPYMT
                     IARPAGSGGGVTAAEVNLKFVWDVVSRIKIGSAGLAYVVDANGVLIAHPDISLVLKKS
                     DLSGLPQVAALVRAGNGPRAVARDLKGEEVFSANASIPTLRWTVFVESPRTEAFAPLY
                     ATL"
     gene            complement(1964..2122)
                     /locus_tag="VF308_14095"
     CDS             complement(1964..2122)
                     /locus_tag="VF308_14095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437835.1"
                     /translation="MIRFLLAIAPRAGDLPIERPTKLELTVNRKVARRLGIAIPSSIL
                     LRADRVIE"
     gene            complement(2253..>2978)
                     /locus_tag="VF308_14100"
     CDS             complement(2253..>2978)
                     /locus_tag="VF308_14100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEX7437836.1"
                     /translation="AMDGHFAQAPVERNLPMLLGLVDVWYRNFHGFTSRCIAPYAQAL
                     QRLPAYLQQLEMESNGKRVDRSGAPLPFATSPVVWGEPGTNAQHAYFQMLHQGSDVVP
                     VEFILLAQSSAVAGAISPEATLRQQRMLLANGLAQSQALMQGRASTSEPHRDFPGNRP
                     STTLLLDRLTPRSLGALLALYEHRVFTSGAVWGIDSFDQWGVELGKTLGAKLLPLLET
                     GPVIALPADLDASTAGLLRRLGA"
BASE COUNT          448 a          983 c         1082 g          465 t
ORIGIN      
        1 ggatcgttga acgcgtcctc ttcgttctgg acacggccgg aaaggatgac ccgcccgctc
       61 atcatcttcg gattcggagg cccagggtag aagcgtttcg agtcggcgag cgcggcggct
      121 ggccagttgc gagtggccgc aaggtgcacg aaccggccgt cgtagcggaa gacggcggac
      181 accgggttgc cgaagagacg gaatgcgctg tcgaggatag cttcgaagac cggcgcgaca
      241 ttcgtcggcg actggctgat gacgcgcagc acgtcgctga tcgcggtctg gtagtcgagc
      301 gcttcgctca gctcggccgt gcgcagctcg accttgcgca aggcctcgcg cgtctcgttg
      361 aacaggcgcg cgttctggat cgcgatcacc gcctggtcgg cgaaggttcg cagcaggccg
      421 acctccttgt cgctgaagcc ggtcggcggc tggcgcgtga cgtagagcgt gccgatggcg
      481 cgcccttccc agaccatcgg cgcgaacatc tgcgagtagg tgccgatgcc gatgcgctcg
      541 gcgatgcggc ggatccccgg cggcacgtcg gcgtcggcaa ggacgtcctt gtagtgcagg
      601 acgcggccgc tgaagatcga tgtctccagg tccggaggct gggtcgaggg gaacaggggc
      661 gcgagccgat cgcgtgccgc gccgcggtgc gccgcgagat gcaccgactg atcctcgccg
      721 aggatcagca cgccttgctc cgagctcgag aacaggtgcg cgcatcgctc gaggatcttc
      781 tcgaacaccg gtgcgctgtc ggcgatcgag ccgctgatca cgctcagcac ctcggctgtc
      841 gccgtctgct gttcgagcgc ttcggtcagc tcggacgtgc gctgctcgac cttgcgctcg
      901 aggccggcgt acgactcgcg cagctgcgcg ctcatccggt tgaactgctc ggccaggcct
      961 tcgagctcgt cgccggtgcg gacctcgatg tggcgctcga gatcgccggc gccgatctgc
     1021 gccgcgcctt cctgcagcgc gcgcagcggc cggaccaggg cgcgggcgag gaagaagctc
     1081 gccgcgatcg agatcagcag cgccgcgacg aggaggaacg aggttcgcta caaggtcgcg
     1141 tagagcggcg cgaacgcctc ggtccgcggc gactcgacga acaccgtcca gcgcagcgtt
     1201 gggatcgacg cattcgcgga gaagacctcc tcgcccttca ggtcgcgcgc gaccgcccgc
     1261 gggccgttgc cggcgcgaac gagcgcggcg acctgcggca ggccgctcag gtcggacttc
     1321 ttcaggacca ggctgatgtc gggatgggcg atcagcacgc cgttggcgtc gacgacgtag
     1381 gccaggccgg cgctgccgat cttgattcgc gagacgacgt cccagacgaa cttcaggttc
     1441 acctcggcgg ctgtcacgcc gccgccgctg ccggcgggac gggcaatcgt catgtacggc
     1501 tcggtgccct tcctgaagta gaccgggccg tagtagatgc cacccttcga ggcgacccgg
     1561 aacttctctt cctgcgccat gtcggtgccg ctgctgatcg cgtccatcgc caggcgcgag
     1621 atgcgcagct gctcgcgccc gttggggtcg atccagacga cctcggtgat cgccggggcc
     1681 tggcgctgca gcttcaggta ctcgatgcga cgctgctcga gcgcgtcgcc gtcggcatcg
     1741 gcacgcggca gggcggtcca gctgagctgg tgctcgatgt cgagcacgta ctgctcgatc
     1801 cgggtcgccg cgttctgcgc cttctcgacc tgcagggcga ccagatgggc ctcggtctcg
     1861 cgccaggaga agtagaggcc gatggcgccg ctggcgatca gcatgctgcc gaccagcgtg
     1921 atgatcagca gcgcgtattt cggaaagagg cgccagcgcc gcgtcattcg atgacgcggt
     1981 cggcgcgcag caggatcgac gatggaatcg cgatgccgag ccggcgcgcg accttgcgat
     2041 tgacggtcag ttcgagcttg gtcggccgct cgatcggcag atcgccggcg cgcggcgcga
     2101 tcgcgagcag gaaacggatc atcgggcgtg cgtcagagcg ggaatgacgc catcttgaca
     2161 cctttcgggc cgcgttcgac cgccatgccc gggcgcggtg gccgaggcga cgcggccacg
     2221 acagcgcggc gacgcgggac cggcgccctc gctcaggcgc cgagccggcg cagcaatccc
     2281 gcggtcgacg cgtcgagatc ggcggggagg gcgatcaccg gtcccgtctc gagcagcggc
     2341 agaagcttgg cgcccaaggt cttgccgagc tcgacgcccc actggtcgaa gctgtcgatg
     2401 ccccagaccg cgcccgaggt gaagacgcgg tgctcgtaga gcgcgagcag cgcgccgagc
     2461 gagcgcggcg tcaggcgatc gagcagcaag gtcgtgctcg gccggttgcc gggaaagtcg
     2521 cgatgcggct cgctcgtgct ggcgcgtccc tgcatcagcg cctggctctg cgccaggccg
     2581 ttggcgagca gcatccgctg ctggcgcagg gtcgcctcgg gcgagatggc gcccgcgacg
     2641 gcgctcgact gcgcgagcag gatgaactcg accgggacga cgtcgctgcc ctgatgcagc
     2701 atctggaagt acgcgtgctg cgcgttcgtc cccggctcgc cccagaccac cgggctggtc
     2761 gcgaacggca gcggcgcgcc gctgcggtcg acgcgcttgc cgttgctttc catctcgagc
     2821 tgctgcaggt aggcgggcag gcgttgcagt gcctgggcat agggcgcgat gcagcggctc
     2881 gtgaagccgt ggaagttgcg gtaccagacg tcgacgaggc cgagcagcat cggcaggttg
     2941 cgctcgaccg gcgcctgcgc gaagtgcccg tccatcgc
//
LOCUS       DASVHM010000765         3523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_560113, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000765 DASVHM010000000
VERSION     DASVHM010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3523
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_560113"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1895)
                     /locus_tag="VF308_14105"
     CDS             complement(<1..1895)
                     /locus_tag="VF308_14105"
                     /inference="COORDINATES: protein motif:HMM:NF024516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3971 domain-containing protein"
                     /protein_id="HEX7437837.1"
                     /translation="MSPISPIPDAALPQRAGLASRRSRLKGLARFAFGLVIAAWSLLL
                     IAWLSLHWFILPHIQQWRAPIEARASSVLGVVVRIGTIEVRSSGWVPGLELRDVVLLD
                     AAQRVALRLPRVVAALSPRSLLALDLRFEQLLIDGAELEVRRDPQGRIFIAGLDFGGA
                     GTGEDGRAGDWFFSQGEFVIRGGAIRWTDEQRGAAPLALTDVQLVVRNGLRHHDIRID
                     ATPPDVWGDRFSLEGRFTQRLLGRSGDWKRWSGSAYASLPRADLRELKQYVTLPFDLS
                     EGNGALRAWFDLHEGEPRAATVDLALREVSLRLAPDVEALSFEQMEGRLEGRRDADGV
                     ALALRNFSFLTGDGVRWPQGDLALTLHQRDGEESTGGVFSAQHLDVGVMAQVATHVPL
                     GAALRKLLADVAPRGVVSDIAAEWQGPLDAPEHYQVKGVLSGLSLEPRASAEAHDVGR
                     PGIRNATLDLRATEAGGDARIAVNAGAIDLPGVFADPLVPLDQLTAHLFWKIERAKGA
                     GAQPRLSVQVKDAKFANPDAHGEFSAIWASGDPADTAHGGRYPGRLELDGKLAGGVAT
                     RVARYLPLGIPEESRHYVEGAIRGGSAKAATFRVKGYLRDFPFHNARSGKDGEFRITA
                     QAEDLTFA"
     gene            2097..>3523
                     /locus_tag="VF308_14110"
     CDS             2097..>3523
                     /locus_tag="VF308_14110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-synthetase adenylyltransferase"
                     /protein_id="HEX7437838.1"
                     /translation="MSAAARADHSRFVRRIRRRYESELALLPAGLPARDAIAALIATL
                     QAGGRTLAGALRVARQLVLERLAVLDIECGAALGDITRAMTELAEVTLGLALTQACAD
                     QDARFGVPRNGAGARIEFWVVGMGKLGAHELNVSSDIDLIYVYEEDGSTDGPPAISAH
                     EYFSHVARSLYTLIGEATEDGFVFRVDLALRPNGKSGPPVVSLAMLEEYLQVQGREWE
                     RFAWLKSRVVAPRQSVENGKALALRGLVAAFVYRRYLDYGVFESLRQLHAKVRDEAQR
                     RAAGRPERANDVKLSRGGIREIEFIVQLLLVVRGGQFPEMRTRSTLKGLAKLAAGGLM
                     KPESAARLAEAYTFLRRVEHRIQFLDDQQTHLLPAQDGDLDWIAASLGFDGPAAACEM
                     LERLGELREFVAIEFDALLHDGRSSAAGAKAGGCRTCGPPVRPIDSEAFLEQLPAELA
                     ARVRPLCDRPKIKMLRDDSKVRLARL"
BASE COUNT          535 a         1262 c         1239 g          487 t
ORIGIN      
        1 gcgaaggtca ggtcctcagc ctgggcggtg atccggaact cgccgtcctt gccgctgcgg
       61 gcgttgtgga acggaaagtc gcgcagatag cccttcaccc gaaacgtcgc cgccttggcg
      121 ctgccgccgc gaatggcccc ctcgacatag tgccgcgact cctccggaat gccgagcggc
      181 aggtagcgcg cgacgcgcgt cgcgaccccg ccggcgagct tgccgtcgag ctcgagccgg
      241 cccggatagc ggccgccgtg cgcggtatcg gcggggtcgc cgctggccca gatcgcgctg
      301 aactcgccat gcgcgtcggg gttggcgaac ttcgcgtcct tgacttgcac gctgaggcgg
      361 ggctgggcac ccgcgccctt tgcgcgctcg atcttccaga acagatgcgc cgtcagctga
      421 tcgagcggca cgagcgggtc ggcgaagacg ccgggcagat cgatcgcgcc ggcgttgacg
      481 gcgatgcggg catcgccgcc ggcctcggtc gcgcgcaggt ccagcgtcgc gttgcggatg
      541 ccgggacgac cgacgtcgtg cgcttcggcc gaggcgcgcg gttccagcga cagcccgctc
      601 agcacgccct tgacctggta gtgctcgggt gcgtcgagcg gcccttgcca ctccgcggca
      661 atgtcgctca ccacgccgcg cggagcgacg tcggcgagca gcttgcgcag cgcggcgccg
      721 agcggaacgt gggtcgcgac ctgggccatc acgccgacat cgagatgctg ggcgctgaag
      781 acgccgccgg tggattcttc gccgtcgcgc tggtgcagcg tcagcgccag gtcgccctgc
      841 ggccagcgca ccccgtcgcc ggtgaggaaa ctgaagttcc gcaaggcgag cgccacgccg
      901 tcggcgtcgc gccgcccttc gaggcgccct tccatctgct cgaagctcag cgcctccacg
      961 tcgggcgcga gccgcagcga cacctcgcgc agcgcgaggt cgacggtcgc ggcacgcggt
     1021 tcgccctcgt gcaggtcgaa ccaggcgcgc agcgcgccgt tgccttcgct caaatcgaaa
     1081 ggcagggtca catattgctt cagctcgcgc aggtcggcgc gcggcaggct ggcataggcc
     1141 gatccgctcc agcgcttcca gtcgccgctg cgcccgagca ggcgctgggt gaagcgccct
     1201 tctaggctga agcggtcgcc ccacacgtcc ggcggcgtcg cgtcgatgcg gatgtcgtga
     1261 tgacgcaggc cgttgcgcac gaccagttgc acgtcggtga gcgcgagcgg tgcggcaccg
     1321 cgctgttcgt cggtccaacg gatcgctcca ccgcggatga cgaactcgcc ctggctgaag
     1381 aaccagtcgc cggcacggcc gtcctcaccc gtgccggcgc cgccgaagtc gaggccggcg
     1441 atgaagatgc gtccctgcgg atcgcgacgc acctcgagct cggcgccgtc gatcagcaac
     1501 tgctcgaaac gcaggtcgag cgcgagcagc gagcgtggcg acaaggcggc cacgacacgc
     1561 ggcaggcgca gggcgacgcg ctgggccgca tcgagcagca ccacgtcgcg cagctcgagc
     1621 ccgggcaccc agccgctgga gcggacctcg atcgtgccga tcctcacgac gaccccaagc
     1681 acgctgctcg cccgcgcctc gatcggcgca cgccattgct ggatgtgggg cagaatgaac
     1741 caatggagtg agagccaggc gatcagcagc aagctccagg ccgcaatcac cagcccgaac
     1801 gcgaaccgcg ccagaccctt gagccgggag cgacgagaag caaggccggc acgctgcggg
     1861 agcgcagcgt cggggatggg cgaaatggga gacatgaaga gatcagtgcg cctgcccggc
     1921 tcgggcctcg aaggtcggat gacgaatggc cacggcagcg ggcgttgtcg ggcgctgagg
     1981 cggcccatcc cgcgatgggc cgcagcaccc ggttcaatct agcacagagc ccgacccgcg
     2041 ccatgggttc cccgccaccc gtcagcgtcg aatccgcgcc cacgttttcg ccccgcatga
     2101 gcgcggccgc gcgcgccgac cacagccgtt tcgtgcgccg catccggcgc cgctatgaat
     2161 ccgaactcgc actcctgccg gccgggctgc cggcgcgcga cgcgatcgcc gcgctgatcg
     2221 cgaccctgca ggccggcggc cgtacgctcg ccggcgcgct gcgggtcgca cgccagctgg
     2281 tgctcgaacg cctggctgtc ctcgacatcg agtgcggcgc ggcgctcgga gacatcaccc
     2341 gggcaatgac cgagctggcc gaagtcacgc tcggcctcgc cctcacgcag gcctgcgccg
     2401 accaggacgc gcgcttcggc gtgccgcgca acggcgccgg cgcgcgcatc gagttctggg
     2461 tcgtcggcat gggcaagctc ggcgcgcacg agttgaacgt ctcgtccgac atcgacctga
     2521 tctacgtcta cgaggaggac ggcagcaccg acgggccgcc ggcgatcagc gcgcacgagt
     2581 acttctcgca cgtggcgcgc agcctctaca cgctgatcgg cgaagcgacc gaagacggtt
     2641 tcgtttttcg ggtcgatctc gccctgcgcc cgaacggcaa gtcgggcccg ccggtcgtga
     2701 gtctggcgat gctcgaggag tacctgcagg tgcagggccg cgagtgggag cgcttcgcgt
     2761 ggctgaagag ccgcgtcgtc gcgccgcgcc agagcgtgga gaacggcaaa gcgctcgcgc
     2821 tgcgcggcct ggtcgccgcg ttcgtctacc ggcgctatct cgactacggg gtcttcgaaa
     2881 gcctgcgcca gctgcacgcc aaggtgcgcg acgaagcgca gcggcgcgct gcgggccggc
     2941 ccgagcgcgc caacgacgtc aagctctcgc gcggcggcat tcgcgagatc gagttcatcg
     3001 tgcagttgct gctggtcgtg cgcggcggcc agtttccgga gatgcgcacg cgctcgaccc
     3061 tgaagggcct cgccaagctc gccgccggcg gcctgatgaa gcccgagagc gcggcgcgcc
     3121 tggccgaggc ctacaccttc ctgcgccgcg tcgaacaccg catccagttc ctcgacgacc
     3181 agcagaccca cctgctgccg gcgcaggacg gcgacctcga ctggatcgcg gcgagcctgg
     3241 gcttcgacgg tccagccgcc gcctgcgaga tgctcgagcg cctcggcgag ctgcgcgaat
     3301 tcgtggcgat cgaattcgat gccttgctgc acgacgggcg atcctcggcg gctggagcga
     3361 aggccggcgg ctgccgcacc tgcgggccac cagtgcggcc gatcgacagc gaagccttcc
     3421 tcgagcagtt gccggccgaa ctcgccgcgc gcgtgcgccc gctctgcgat cgcccgaaga
     3481 tcaagatgct gcgcgacgac agcaaggtgc gtctggcccg cct
//
LOCUS       DASVHM010000766         1937 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_706201, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000766 DASVHM010000000
VERSION     DASVHM010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_706201"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..235)
                     /locus_tag="VF308_14115"
     CDS             complement(<1..235)
                     /locus_tag="VF308_14115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437839.1"
                     /translation="MGASGARDAGRVAWLGVHAGERDAPAVYAILLIGPFLGWAAASA
                     HSVPVKLLGVLALPSLAPRKAKWGFEAGDIHGYA"
     gene            complement(391..1476)
                     /locus_tag="VF308_14120"
     CDS             complement(391..1476)
                     /locus_tag="VF308_14120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="prenyltransferase/squalene oxidase
                     repeat-containing protein"
                     /protein_id="HEX7437840.1"
                     /translation="MLKMARVALIATLLVAGVASAAPNDMAPQVRAKAQQAVDSGIRY
                     LLTKQAANGSVLNSAGLTALSLTSILQNPAGADKVDKAAIDKYATFLVSKANADGSIV
                     ERQHDQSYNTAVSIVALAATKDPKYAPVISAGQKYIANAQIGESRGFAPVDSWYGGMG
                     YGGDERPDMSNLYIAVEAMRKTAYDPKDPIWQKALVFASRMQNRSESNDQKWAGNDGG
                     FAYSPGMNPPEMGGGTKSYASVTAAGLYGLLLIGVDKSDPRVQAAYKWLTTNYTLDTN
                     FGTNTKNTLFYFYCAFAKVMDAYGEKEFVDSRGQRHNWRNELAERLIALQNPDGSWVN
                     RDSNEWWEDKPELATAWGVIALEHALK"
BASE COUNT          312 a          637 c          642 g          346 t
ORIGIN      
        1 tggcgtagcc gtggatgtcg ccggcctcga atccccactt cgccttgcgc ggcgcgagcg
       61 agggcagcgc gagcacgcca agcagcttca ccggcacgct gtgcgccgag gcggcagccc
      121 agccgagaaa tgggccgatc agcaggatcg cgtagacagc cggtgcatcg cgctcgccag
      181 cgtgcactcc cagccaggcg actcgcccgg cgtcacgcgc accggatgcg cccaccggtg
      241 caccaggcgc gcggccatga cgacgaggat cgccaggccg agattgaagt gcaggttgat
      301 cgtcgtgtcg agcggcgtgt cgagccgaga cgaaagaggc ctgacgtcct cagggcctgt
      361 ccctacggcg aggtcaaagg ggtaaggcgc tcacttcagc gcatgttcca gggcgatcac
      421 gccccacgcg gtcgcgagct cgggcttgtc ttcccaccac tcgttcgagt cgcggttgac
      481 ccacgaccca tcggggtttt gcagggcgat cagcctctcg gccagttcgt tgcgccagtt
      541 gtggcgctgc ccccggctgt cgacgaactc cttctcgcca taggcgtcca tcaccttcgc
      601 aaacgcgcag taaaagtaga agagcgtgtt cttcgtgttg gtgccgaagt tggtgtcgag
      661 cgtgtagttc gtggtcagcc acttgtaggc cgcctgcacg cgcgggtcgg acttgtcgac
      721 gccgatcagc agcaggccgt agagcccggc cgcggtcacc gaggcatagg atttcgtgcc
      781 gccgcccatc tccggcgggt tcatgccggg cgagtaggca aagccgccgt cgttgccggc
      841 ccacttctgg tcattgctct cgctgcggtt ctgcatccgg ctggcgaaga ccagcgcctt
      901 ctgccagatc gggtctttcg ggtcgtaggc ggtcttgcgc atcgcctcga ctgcgatgta
      961 gaggttcgac atgtccggcc gctcgtcgcc gccgtagccc atgccgccat accagctgtc
     1021 cacaggcgcg aagccgcgcg actcgccgat ctgcgcattc gcgatgtact tctgcccggc
     1081 gctgatcacg ggcgcgtact tggggtcctt ggtcgccgcc agcgcgacga tcgacaccgc
     1141 ggtgttgtag ctctggtcat gctgtcgctc gacgatcgag ccgtcggcgt tcgccttgga
     1201 gacgagaaac gtcgcgtact tgtcgatcgc ggccttgtcg accttatccg cgccggcagg
     1261 gttctgaaga atcgacgtga gcgacagggc cgtgaggccg gccgagttca ataccgaacc
     1321 gttggcggcc tgcttggtga gaaggtacct gatgccgctg tcgaccgcct gctgcgcctt
     1381 ggcgcgcacc tgcggagcca tgtcgttggg cgcggcgctc gcgacgccgg caacaaggag
     1441 cgtggcaatc agggcgactc tcgccatctt gagcatgtga atcctcacga atcagggcat
     1501 ccgaactcag caccggtcac aagcggccgc cgatccgtgc tcggtcgacg ctccagaact
     1561 cccggccagc gatcatccag gcgctgacct ggtgcgagtc gatcggcgtc ggcgcacctc
     1621 tcacggtgac cggcggcacg cagaccggga gcgtccgaaa tgtattgagt atggatcgcc
     1681 taagcaagat gcccccccag aacggggggc gagtcgcgcc cgcgccgacg actcggccgt
     1741 tccgacgtga cgacctcgat ggcgcggtca gaactcccgg ccggcgatca cctagaggcg
     1801 ttgactctcg tcgagtcccg ggtgaggccg aacagcggcg cgaagtcgac gtgcgtctgc
     1861 ttgaccggcc gccgccgcat cgaagacccg atctggagat cgcgatcgtt atggcttctc
     1921 gggtgctgaa gtttcgg
//
LOCUS       DASVHM010000767         1713 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_54282, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000767 DASVHM010000000
VERSION     DASVHM010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54282"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..704
                     /locus_tag="VF308_14125"
     CDS             <1..704
                     /locus_tag="VF308_14125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEX7437841.1"
                     /translation="EQGVESTIVIFGSARILPPETAAQRLALARKGGDAQALRRAEMA
                     VRMSRYYDEARRFGAIVTIKSRGMDRPVYVVTGGGPGIMEAGNRGAFEVGGKSIGLNI
                     VLMHEQEPNRYITPELCFQFHYFGLRKMHFLMRSIALVCFPGGFGTLDELFETLTLTQ
                     TGKSRRRPVLLFGREFWTGLINFELLVETGMIGAEDLGLFHFVETAEEAWTVLAAEYG
                     FDLPDTETGALAMDI"
     gene            727..1647
                     /gene="rocF"
                     /locus_tag="VF308_14130"
     CDS             727..1647
                     /gene="rocF"
                     /locus_tag="VF308_14130"
                     /EC_number="3.5.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013393931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004053 - arginase activity [Evidence
                     IEA];
                     GO_process: GO:0019547 - arginine catabolic process to
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase"
                     /protein_id="HEX7437842.1"
                     /translation="MPVNPLISLIGAPTDIGAGSRGASMGPEALRVANILGVLHSHGL
                     EVLDRGNLVGPTNPWLPPVDGYRHLHEVVAWCRSVHDAVYAELALGRLPILLGGDHSL
                     AIGSISAVARQCREAGKKLRVLWLDAHADFNTNGLTPSGNLHGMPVSCLCGRGPQELI
                     GIGGQVPAISPKMIRQIGIRSVDAGEKRLVHEAGLEVFDMRYIDEMGMRHTMELALAT
                     IDANTHLHVSFDVDFLDADIAPGVGTTVKGGPTYREAQLCMEMIADSGALASLDVMEL
                     NPALDVRNRTAEVAVDLIESLFGKSTLMRR"
BASE COUNT          283 a          602 c          574 g          254 t
ORIGIN      
        1 gggagcaggg cgtcgagtcg acgatcgtga tcttcggcag cgcccggatc ctgccgccgg
       61 aaacggcagc gcagcggctg gcgctggccc gcaagggcgg cgacgcccag gcgctgcgcc
      121 gcgccgagat ggcggtgcgc atgtcgcgct actacgacga ggcgcgccgc ttcggggcga
      181 tcgtgacgat caaatcgcgc ggcatggaca ggccggtcta tgtcgtcacc ggcggcgggc
      241 cgggcatcat ggaagccggc aaccgcggcg ccttcgaagt cgggggaaag agcatcggcc
      301 tcaacatcgt gctgatgcac gagcaggagc cgaatcgcta catcacgccc gagctctgct
      361 tccagttcca ctacttcggc ctgcgcaaga tgcacttcct gatgcgctcg atcgcgctgg
      421 tgtgctttcc gggcggtttc ggcacgctcg acgaactgtt cgagaccctc accctcacgc
      481 agaccggcaa gtcgcggcgg cgcccggtgc tgctcttcgg ccgcgagttc tggaccgggc
      541 tcatcaattt cgagttgctc gtcgagaccg gcatgatcgg cgcggaagac ctgggcctct
      601 tccatttcgt cgagaccgcc gaggaggcgt ggaccgtgct ggctgccgaa tacggcttcg
      661 acctgcccga cacggaaacc ggcgccctcg cgatggacat ctgattcgaa ccggccgagg
      721 acttccatgc ccgtcaaccc gctcatcagc ctgatcggcg cgcccaccga catcggcgcc
      781 ggcagccgcg gcgcgagcat ggggccggag gccctgcgcg tcgcgaacat cctcggcgtg
      841 ctgcacagcc acgggctcga ggtgctcgac cgcggcaacc tcgtcgggcc gacgaaccca
      901 tggctgcccc cggtcgacgg ctaccgccac ctgcacgaag tcgtcgcctg gtgccgcagc
      961 gtgcacgacg cggtgtacgc cgaactcgcg ctggggcgcc tgccgatcct gctcggcggc
     1021 gaccattcgc tcgccatcgg ctcgatcagc gcggtcgcgc gccagtgccg cgaagccgga
     1081 aagaaactgc gcgtgctctg gctcgacgcc catgccgact tcaacaccaa cggcctgacg
     1141 ccgagcggca acctgcacgg catgccggtg tcgtgcctgt gcggccgtgg gccgcaggaa
     1201 ctgatcggga tcggcggcca ggtgccggcg atcagcccga agatgatccg ccagatcggc
     1261 atccgcagcg tcgacgccgg cgagaagcgc ctcgtccacg aagccgggct cgaggtcttc
     1321 gacatgcgct acatcgacga gatggggatg cgccacacga tggagctggc gctggcgacg
     1381 atcgatgcca acacccacct gcacgtgagc ttcgacgtcg acttcctcga cgccgacatt
     1441 gcccccggcg tcggcaccac cgtcaagggc ggaccgacct accgcgaagc ccagctctgc
     1501 atggaaatga tcgccgacag cggcgccctt gcctcgctcg acgtgatgga actgaacccc
     1561 gcgctcgacg tgcgcaaccg caccgccgag gtcgcggtcg acctgatcga gagcctgttc
     1621 ggcaagagca cgctgatgcg gcgctgaggg cacggccggc gcggtgcatc acgcgggtcg
     1681 aatgcttcgc gccgatcgac gccgtcgcca tgg
//
LOCUS       DASVHM010000768         3746 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1067357, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000768 DASVHM010000000
VERSION     DASVHM010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1067357"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1312
                     /locus_tag="VF308_14135"
     CDS             <1..1312
                     /locus_tag="VF308_14135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008346439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DotU family type VI secretion system protein"
                     /protein_id="HEX7437843.1"
                     /translation="ESYRTVIKPSAGRARPAGPGSPPGPVGPGGAAPRAEPPGKEAPL
                     AFDALMTAGINPLVSAASPLLSAAPRIRAMAQHPNPAGLKDALADGVRKFEAQARAEG
                     LPNEQVIAARYILCTLLDESAASTPWGGSGIWSNQSLLVLFHNETWGGEKVFQLMSKL
                     AENIPANRNLLELLYVVLAFGFEGRYRVLNDGKAQLESVRVRLSQMLRQNRGQADKAL
                     SPRWEGVPARVARLGAGLPMWVVMSLAALLLMGVYIGLRFAINGHSDTVFSTLQGLDA
                     KAAALPTAALPPPPAAAPRLAALLKPDIDAGLLQVRDLADRSIVIIKGDGFFEPGSAV
                     IDDKVKPLLGRIEAALQVTPGQVLVTGHTDNQPIRSLRYPSNWHLSQERATAVKNLLA
                     GAIKPERLRAEGRADAEPVEPNTTPAGRTKNRRVEITLLVPGNA"
     gene            1309..>3746
                     /gene="tssM"
                     /locus_tag="VF308_14140"
     CDS             1309..>3746
                     /gene="tssM"
                     /locus_tag="VF308_14140"
                     /inference="COORDINATES: protein motif:HMM:TIGR03348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEX7437844.1"
                     /translation="MKKLLQFLLHPFLLALVGVLALSALIWWVGPLIAIGEKRPLDPE
                     WVRILIIALLFTLLLARTAYGVWQRKRTNAALVDGMAKGPSSADREVGVLSERFTQAI
                     DVLKTAPSSAKRGIFGRGQFLYELPWYIFIGAPGSGKTTALLNAGLTFPLAEKLGNAS
                     VRGVGGTRNCDWWFSDEAVLIDTAGRYTTQESDSQADAAAWDGFLALLRKSRPRRPIN
                     GVLLTINIQDLLQQTPADRKEHAAKLRARMQELAEKLGVRAPVYVLVTKADLIAGFNE
                     SFGDLGKEERNQVWGFSFPYAPHSTDDPLVNFGSEFAALEKRLRDRVVERMDAEHDVL
                     KRAAIFNFPQQFAGLKGLLGGFLEQVFGSSGRIDERPVLRGVYFTSGTQEGTPIDRVM
                     GTLARTFGIERRLPAVSAARGKSFFLNRLLREVVFAEQGLVGENRAMERRRARLRLAG
                     FAFTLIASVALIAGWAVSYSRNKAYVAEIDAKLPDLKKAVEALPPATSGDVTPLPAVL
                     SAVRAAAQPAEFPLDAPPASMGLGLYQGGKLDAGADLGYQHLLDHALMPRVVRRLEER
                     LRASNRDNLEVAYEGLKNYLMLYTPGKFDAESFKAWVTIDWDATLERSLRPEQREALA
                     AHLDAMLAHGAPQPSMPMDKTLVAGVRDMLVAYPLEYRVFSRLKRAQLGADLPPFTVA
                     GAAGPSALQVFERVSGEPLTKGISGLYTKDGYHKAFQTSVDKATKQLAAEESWVLGLR
                     PADTKSLPLLKANSELTNRVRRLYFEEYIKVWDSYLADVRIVKMGGLEQSLQVARALS
                     GVDSPLAAYLRGVAR"
BASE COUNT          588 a         1296 c         1265 g          597 t
ORIGIN      
        1 cgaatcgtac cgcaccgtga taaagccgag cgccggccgc gcgcgacccg ctggcccagg
       61 ctccccgccc ggcccggtcg gacccggcgg cgcagcaccc cgggccgagc cgcccggcaa
      121 ggaggcgccg ctcgctttcg acgcgctgat gactgcgggc atcaacccgc tcgtctccgc
      181 cgcgtcgccg ttgctcagcg ccgcgccgcg catccgcgcg atggcccagc atccgaaccc
      241 ggcaggcctg aaggacgcgc tcgccgacgg cgtccgcaag ttcgaagcgc aggcgcgtgc
      301 cgagggtctg ccgaacgaac aggtgatcgc ggcgcgctac atcctgtgca cgctgctcga
      361 cgaatccgcc gccagcacac cttggggcgg ctcgggcatc tggtccaacc agagcctgct
      421 cgtgctcttt cacaacgaga cctggggcgg cgagaaggtg ttccagctga tgtcgaagct
      481 ggccgaaaac ataccggcga accgcaacct gctcgagttg ctctatgtgg ttctggcctt
      541 cggcttcgaa ggccgctacc gggtcctcaa cgacggcaag gcgcagctcg agagcgtgcg
      601 cgtgcgcctg tcgcaaatgc tgcgccagaa ccggggccag gccgacaagg cgctctcgcc
      661 gcgctgggag ggtgtgccgg cgcgcgttgc gcggctcggt gccggcttgc cgatgtgggt
      721 cgtgatgtcg ctcgccgcgc tgctcctgat gggtgtctac atcgggctca ggttcgcgat
      781 caatggtcat tccgatacgg ttttctcgac cttgcagggc ctcgacgcga aggccgcggc
      841 gctgcccacc gcggcgctgc cgccaccgcc cgctgcggcg ccgcgtctgg ccgccttgtt
      901 gaagcccgat atcgacgccg ggctgctcca ggtgcgcgac cttgccgacc ggtcgatcgt
      961 gatcatcaag ggcgacggct tcttcgagcc cggcagcgcg gtcatcgacg acaaggtgaa
     1021 gccgctgctc ggccgcatcg aggcggcgct ccaggtcacc cccgggcagg tgctggtgac
     1081 cggccacacc gacaaccaac cgatccgctc attgcgctac ccgtccaact ggcatctttc
     1141 gcaggagcgc gccacggcgg tcaagaacct gctggcgggc gcgatcaagc cggagcggct
     1201 gcgcgccgaa ggccgcgccg acgcggagcc ggtcgagccc aacaccacgc cggccgggcg
     1261 cacgaagaat cgccgcgtcg agatcacgtt gctggtgccg gggaacgcat gaagaagctg
     1321 ctgcagttcc tgctccaccc gttcctgctg gcgctggtcg gtgtgctcgc gctgtcggcg
     1381 ctgatctggt gggtcggccc gctgatcgcg atcggcgaga agcgcccgct cgatccggag
     1441 tgggtccgga tcctgatcat cgcgctgctc ttcacgctgc tcctcgcgcg cacggcgtac
     1501 ggggtgtggc agaggaagcg caccaatgcg gcgctcgtcg acggcatggc caagggcccg
     1561 agcagcgcgg accgtgaagt cggtgtcctc agcgagcgct tcacccaggc gatcgacgtg
     1621 ctgaagaccg cgccgtcgag cgccaagcgc ggcatcttcg gacgcggcca gttcctgtac
     1681 gagctgccct ggtacatctt catcggcgcg cccggttcgg gcaagacgac ggcgctgctg
     1741 aacgcagggt tgactttccc gctcgccgag aagctcggca atgccagtgt gcgtggcgtc
     1801 ggcggcacgc gcaactgcga ctggtggttc agcgacgagg cggtcctcat cgacaccgcc
     1861 ggccgctaca cgactcagga gtccgatagc caggccgacg ctgccgcctg ggacggcttt
     1921 ctcgcgctgc tgcgcaagtc gcgcccgcgc cggccgatca acggggtgct gctgacgatc
     1981 aacatccagg atctcctgca gcagacgccg gccgatcgca aggagcacgc cgccaagctg
     2041 cgcgcgcgaa tgcaggaact cgcggagaag ctcggggtgc gcgcgccggt ctatgtgctc
     2101 gtgaccaagg ccgatttgat cgccggcttc aacgagagct tcggcgacct cggcaaggag
     2161 gagcgcaatc aggtctgggg cttcagcttc ccctatgcgc cgcacagcac cgacgaccca
     2221 ctggtcaact tcggctccga gttcgcggcg ctcgaaaagc gcctgcgcga tcgcgtcgtc
     2281 gagcgcatgg atgccgagca cgatgtactc aagcgcgccg cgatcttcaa ctttccgcag
     2341 cagttcgccg gactcaaggg cctgctcggc ggcttccttg agcaggtgtt cggctcgagc
     2401 ggccgcatcg acgagcgtcc cgtcctgcgt ggcgtctact tcaccagcgg cacccaggaa
     2461 ggcacgccga tcgaccgcgt gatgggtacg ctcgcgcgga ccttcggcat cgagcggcgc
     2521 ctccccgccg tttccgcggc gcgtggcaag agcttcttcc tgaaccggct gctgcgtgag
     2581 gtggtcttcg ccgagcaggg gctcgtgggc gagaaccgag ccatggagcg gcgccgtgcg
     2641 cggctgcgcc tcgcgggttt cgcgttcacg ctgatcgcta gcgtcgcgct gatcgcgggc
     2701 tgggccgtca gctactcgcg caacaaggcc tatgtggccg agatcgatgc gaagctgccc
     2761 gatctgaaga aggcggtcga ggcgctgccg ccggcgacgt cgggcgacgt gacgcccctg
     2821 cccgcggtgc taagcgcggt gcgtgcggca gcccaaccgg cagaatttcc gctcgatgcg
     2881 ccaccggcgt cgatgggcct cggtctctat cagggcggca agctcgatgc cggcgccgat
     2941 ctgggctacc agcatctgct cgatcacgcg ctgatgccgc gggtggtgcg acgcctcgaa
     3001 gagcgcctgc gggcttcgaa tcgcgacaac ctcgaagtcg cctatgaagg gctgaagaac
     3061 tacctgatgc tctatacgcc cggcaagttc gacgccgaat ccttcaaggc ctgggtcacg
     3121 atcgactggg acgcgaccct ggagcgcagc ctccgccccg agcagcgcga agcgcttgcg
     3181 gcgcacctcg acgcgatgct ggcccatggc gcgccgcagc cttcgatgcc gatggacaag
     3241 acgctggtcg ccggcgtccg cgacatgctg gtcgcgtacc cactcgagta ccgcgtcttc
     3301 agccgcctca agcgcgccca gctcggtgcc gacctgccgc ccttcaccgt ggccggtgcc
     3361 gccggcccct cggccttgca ggtcttcgag cgcgtgagcg gcgagccgct cacgaagggc
     3421 atctccggcc tctacaccaa ggacggttat cacaaggcct tccagacttc ggtcgacaag
     3481 gcgacgaaac agctcgctgc cgaagaaagc tgggtgctcg ggctgagacc ggcggacacg
     3541 aaatcgttgc cgctcctgaa ggcgaacagc gaactgacga atcgcgtgcg ccgcctttat
     3601 ttcgaggaat acatcaaggt ctgggacagt tacctcgccg acgttcgcat cgtcaagatg
     3661 ggcggcctcg agcagagcct gcaggtggcg cgcgcgctgt ccggggtcga ttcgccgctc
     3721 gcggcgtatc tgcgcggcgt tgcccg
//
LOCUS       DASVHM010000769         3161 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_633834, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000769 DASVHM010000000
VERSION     DASVHM010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3161
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_633834"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..470)
                     /locus_tag="VF308_14145"
     CDS             complement(<1..470)
                     /locus_tag="VF308_14145"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018907526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEX7437845.1"
                     /translation="MPRPIVARIHVEALAHNLRRARTAAPGARVWAVVKANAYGHGIG
                     HAYAGLRGADGFALLDLLEAEQVRSLGWRGPILLLEGCFSARDLETCSRLNLWHTVHH
                     DAQIDMLAAHKTDRPHHVFLKMNSGMNRLGFAPDAYRTAWLRLDALPQVDAITL"
     gene            605..1882
                     /gene="lplT"
                     /locus_tag="VF308_14150"
     CDS             605..1882
                     /gene="lplT"
                     /locus_tag="VF308_14150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011799565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid transporter LplT"
                     /protein_id="HEX7437846.1"
                     /translation="MKKGFYTIMSAQFFSSLADNALLVAAIEMLKTSGAPSWHIPALT
                     PMFALFYVILAPFVGAFADAVPKGTVMFISNAIKVIGCVMMLFGGHPLFAYAIVGLGA
                     AAYSPAKYGILTELLPPSQLVKANGWIEGLTILSIIFGVLLGGQLVGHVVSRHLLAFD
                     LPLIDTGITTAPQAAISLIVFLYVVAALFNLGIPRTEAPLQPLARGVPMLVRDFSNCN
                     ARLWNDKLGQISLATTTLFWGVLGNVRIIVFAWAAAALGYSTTQASALVGVVAIGTAA
                     GAIVASMHMRLDQATRVIPLGMAMGILIIGLNFITNAWIAAPFLIFLGAIGGFLVVPM
                     NALLQHRGANLMGSGRSIAVQNFNEQACILGLGAFYTAMTRYGLSAFTAIGIFGVVIA
                     ATMWLIRRWYASNCIRHREEINHLLAIARSDKH"
     gene            1975..2901
                     /locus_tag="VF308_14155"
     CDS             1975..2901
                     /locus_tag="VF308_14155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7437847.1"
                     /translation="MPRPPARAGRSPSTLLPVLALTLNALVWGTSWWPFRRLQAEGLH
                     PLWATSLIFALAAVVIVALRPRALAQVWRTPALWVLVLGAGATNAAFNWAVVIGDVVR
                     VVLLFYLMPLWTVLLARALLGERLGGRAGLRVALGLAGAAIVLWPADATGLGALPIPR
                     TLADWLGLVGGLSFALNNVMLRREAARPEEGRALAMFLGGALVAGALAAVLSVRDPAL
                     WPPAATPGWIWLVLALVAVFLGGNLSLQYGAARLPANRTAVVMLTEVLFASASAVLLG
                     GEVLGAPLLIGGGLIVLAAALAAIEPVADASP"
     gene            2996..>3161
                     /locus_tag="VF308_14160"
     CDS             2996..>3161
                     /locus_tag="VF308_14160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015012107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEX7437848.1"
                     /translation="MATSAPAVYDFEALSIQGKPAHLSTQRGKVLLIVNTASACGFTP
                     QFAGLEALWKD"
BASE COUNT          440 a         1101 c         1053 g          567 t
ORIGIN      
        1 atcagggtga tcgcatcgac ctgcggcaag gcgtcgagcc gaagccacgc ggtgcggtag
       61 gcgtcgggcg cgaagccgag ccggttcatg ccgctgttca tcttcagaaa cacatggtgg
      121 ggacgatcgg tcttgtgcgc ggcgagcatg tcgatctgcg cgtcgtggtg cacggtgtgc
      181 cacaggttca ggcgcgaaca ggtctcgaga tcgcgcgccg aaaaacaccc ctcgagcagc
      241 aggatcgggc cgcgccagcc aagcgagcgg acctgttcgg cctcgaggag atcgaggagc
      301 gcaaaaccgt cggcgcccct caatccggca taggcatggc cgatgccgtg gccatacgca
      361 ttcgccttga cgacggccca gacccgcgcc ccgggcgccg ccgtgcgggc gcggcgcagg
      421 ttgtgcgcga gggcctcgac gtggattcgc gcaacgatgg gacgaggcat gcatcgattc
      481 tgccagcgcg cacggggcga acgaagccct gctgcgcacg cgggtgcgtg gaaaagtcgc
      541 gtgctataac gccgccgcag gagacacaag cggatacacg actccgccga cggccgttgc
      601 ccgaatgaaa aaaggctttt acacgatcat gtcggcgcag ttcttcagct cgctggctga
      661 taacgcgctg ttggtcgccg ccatcgaaat gctcaagacg tcgggcgcgc cgtcgtggca
      721 tatcccggcg ctgacgccga tgttcgcgct cttctacgtg atcctcgcgc ccttcgtcgg
      781 cgccttcgcc gacgcggtgc ccaagggcac ggtgatgttc atctcgaacg cgatcaaggt
      841 aatcggttgc gtgatgatgt tgttcggcgg gcacccgctg ttcgcctatg cgatcgtcgg
      901 cctcggtgcc gccgcgtact cgcccgccaa gtacggcatc ctgaccgaat tgctgccgcc
      961 ttcgcagctt gtgaaggcga acggctggat cgaaggcctg acgatcctgt ccatcatctt
     1021 cggcgtcctg ctcggcggac agctcgtcgg ccacgtcgtg tcgcgccacc tgctcgcgtt
     1081 cgacctgccc ctcatcgaca ccggcatcac gaccgcaccg caagccgcga tctcgctcat
     1141 cgtcttcctc tacgtcgtgg ccgccctctt caacctcggc attccccgca ccgaggcgcc
     1201 gctgcagccg ctggcgcgcg gcgtgccgat gctggtgcgc gatttttcga actgcaatgc
     1261 gcgcctgtgg aacgacaagc tcggccagat ttcgctggcc acgacgacgc tgttctgggg
     1321 tgtgctgggc aacgtgcgca tcatcgtgtt cgcctgggcc gcggccgcgc tcggctactc
     1381 gaccacgcag gcctcggcgc tggtcggcgt cgtcgcgatc gggaccgccg cgggggcgat
     1441 cgtcgcctcg atgcacatgc gcctcgacca ggcgacccgg gtgatcccgc tcggcatggc
     1501 gatgggcatc ttgatcatcg gtctgaactt catcaccaac gcctggatcg cggcaccctt
     1561 cctgatattt ctcggcgcca tcggcggctt cctcgtggtg ccgatgaacg cgctgctgca
     1621 gcaccgcggc gccaacctga tgggttcggg tcggtcgatc gcggtgcaga acttcaacga
     1681 gcaggcctgc atcctcggcc tcggcgcgtt ctacaccgca atgacgcgct acggcctgtc
     1741 ggccttcacg gcgatcggga tcttcggtgt ggtgatcgcc gcgacgatgt ggctgatccg
     1801 tcgctggtat gcctcgaact gcattcggca ccgcgaagag atcaaccatc tcctcgcgat
     1861 cgcacgcagc gacaagcact gaggccggac acgagggcgt gcctgccgaa gggcattgcg
     1921 cctgcaagcg catggcttga gcgccggcgc ggcggcgccg acgacaatcg aacgatgccc
     1981 cgtcctcccg ctcgcgcagg gcgctcgcct tcaacccttc tgccggtcct cgcgctgaca
     2041 ctcaacgccc tcgtctgggg cacgtcctgg tggccgtttc gccgcctcca ggccgaagga
     2101 ttgcaccccc tctgggcaac ctcgctcatc ttcgcgctgg ccgccgtcgt aatcgtcgca
     2161 ctgcgcccgc gcgcactcgc ccaggtctgg cgcacgcctg cgttgtgggt gctcgtgctg
     2221 ggcgcgggtg cgaccaacgc ggccttcaac tgggccgtcg tgatcggcga tgtcgtccgc
     2281 gtcgtgttgc tcttctatct gatgccgctg tggaccgtgc tgctcgcgcg tgcgctgctc
     2341 ggcgagcgcc tcggtgggcg tgccggactg cgcgtggcgc tcggcctcgc cggtgcagcg
     2401 atcgttctgt ggccggccga cgcaacgggc cttggcgcgc tgccgatccc gcgcaccctg
     2461 gccgactggc tcggcctcgt gggcggcctc tcgttcgcgc tcaacaacgt gatgctgcgg
     2521 cgcgaggcgg cccggcccga ggagggccgg gcgctggcga tgttcctcgg cggcgccctg
     2581 gtcgccggag cgctcgcggc agtgctttcc gtgcgcgatc cggcgctttg gccgccagct
     2641 gcgacgcccg gctggatctg gctggtgctc gcgctggtgg cggtgtttct cggcggcaac
     2701 ctgtcgctgc aatacggcgc cgcgcgcctg ccggcgaacc gcacggccgt cgtcatgctg
     2761 acggaagtgc tgttcgcctc ggcctcggcc gtcctgctcg gcggcgaggt gctcggcgcg
     2821 ccgctgctga tcggcggcgg cctgatcgtg ctggccgcgg cactggcggc gatcgagcct
     2881 gtggccgacg cctcgccgtg acgctggaca agcgcgagga gatcgcctcg ggggagcggc
     2941 acatcgtgcg cccggcgcta ccatcggcgt ccatcccgct ttccgtgagg catgcatggc
     3001 cacttccgca cccgccgtct acgacttcga ggccttgtcg atccagggca aaccagccca
     3061 cctctcgacc cagcgcggca aggtcctcct gatcgtcaac accgcgagcg cgtgcggctt
     3121 cacaccgcag ttcgccggcc tcgaggcgct gtggaaagac t
//
LOCUS       DASVHM010000770         3393 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1139539, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000770 DASVHM010000000
VERSION     DASVHM010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3393
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1139539"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2469)
                     /locus_tag="VF308_14165"
     CDS             complement(<1..2469)
                     /locus_tag="VF308_14165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX7437849.1"
                     /translation="MLLTRKPSSSSFADAAAASSALVASLARGVRRAVPTMDRRAFLR
                     RSGVGVGVGLATSQLTLVKKAEAADPATASSKPVVRRTVCTHCSVGCAVDAVVENGVW
                     TRQEPVFDSPLNLGAHCAKGAALREHGHGEYRLKTPMKLVGNKYERISWDQALNEIGA
                     KMLDLKKQSGPDSVFIVGSSKHNNEQSYLLRKWASLWGSNNCDHQARICHSTTVAGVA
                     NTWGYGAMTNSYNDMRNTKCAMYIGSNAAEAHPVSMLHMLHAKETGSKMIVVDPRFTR
                     TAAKADEYVRIRSGSDIAFLFGVLHHVFKNGWEDKKYIADRVYGMDKVRDEVMTKWTP
                     DKVQEVCGVDEATVFKVAKMMAENRPSTIVWCMGQTQHTTGNAIVRASCIVQLALGNV
                     GVSGGGANIFRGHDNVQGATDVGPNPDSLPGYFGLAEGAWKHFAKVWGVDFEWIKKQY
                     APGMLTKPGMTVSRWIDGVLEKNDLIDQDSNLRGLIFWGHAPNSQTRGAEMKRAMDKL
                     DLLVVVDPYPSASAAMAAMPGNKDDLNPKRAVYLLPAATQFETSGSVTASNRSLQWRE
                     KVIEPLFESRTDHMIMYQLAQKLGFDKELVAKLKLVPGKAGMPEPEVESILREINQTC
                     WTIGYTGQSPERLKAHMRNMNVFDVNTLRAKGGIDKETGYKLDGDYFGLPWPCYGNPE
                     LKHPGSPNLYDTSRHVMDGGGNFRANFGVEKDGVNLLAEDGSCSKGADITTGYPEFDH
                     VFLKKLGWWSELTDAEKAVAEGKNWKTDTSGGIIRVVMKNHGCHPFGNAKARAIVWNF
                     PDGIPQHREPLYSPRPDMVAKYPTH"
     gene            complement(2489..2734)
                     /locus_tag="VF308_14170"
     CDS             complement(2489..2734)
                     /locus_tag="VF308_14170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013211792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase"
                     /protein_id="HEX7437850.1"
                     /translation="MKTQPSRHAQVVAPASAETQPKRRQLVVGAGVAAGAALAATALK
                     QHAEAPAAVAKAAPDMAQGEGYRLTDHVLRYYETTRT"
     gene            complement(2903..>3393)
                     /locus_tag="VF308_14175"
     CDS             complement(2903..>3393)
                     /locus_tag="VF308_14175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005797149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEX7437851.1"
                     /translation="TEAPVAGAFLEASWGGLVAAARRLDRAQIEREFDTLFQGVGKPE
                     VFLYGSFYIAGTLNEKPLVALRHSLRELGLARSDGMNETEDHIASLCEVMRYLIAGDD
                     AGTSNLAAQRRFFDSHLRGWVDALCTAIEANPDADFYAMAARFARDFFAVEAQAFDLL
                     DA"
BASE COUNT          505 a         1098 c         1162 g          628 t
ORIGIN      
        1 gtgcgtcgga tatttcgcca ccatgtccgg ccgcggcgaa tacagcggct cgcgatgctg
       61 cggaatgccg tcggggaagt tccagacgat ggcgcgcgcc ttcgcattgc cgaacggatg
      121 gcagccgtgg ttcttcatca cgacgcggat gatcccgccc gaggtgtcgg tcttccagtt
      181 cttgccttcg gcgaccgctt tctcggcgtc ggtcagctcg ctccaccagc cgagcttctt
      241 caggaagacg tggtcgaact cggggtagcc ggtcgtgatg tcggcgccct tcgagcacga
      301 gccgtcctcg gcgagcaggt tgacgccgtc cttctcgacg ccgaaattgg cgcggaagtt
      361 gccgcccccg tccatgacgt ggcgcgacgt gtcgtagagg ttgggcgacc ccgggtgctt
      421 cagctcgggg ttgccgtagc acggccaggg caggccgaag tagtcgccgt cgagcttgta
      481 gccggtctcc ttgtcgatgc cgcccttggc gcgcagcgtg ttgacgtcga agacgttcat
      541 gttcctcatg tgcgccttga gccgctcggg cgactggccg gtgtagccga tcgtccagca
      601 ggtctggttg atctcgcgca ggatcgactc gacctcgggc tcgggcatgc cggccttgcc
      661 cgggacgagc ttcagcttgg cgacgagctc cttgtcgaag ccgagctttt gcgccagctg
      721 atacatgatc atgtgatcgg tgcgcgactc gaagagcggc tcgatcacct tctcgcgcca
      781 ctgcagcgag cggttcgacg ccgtcaccga gcctgaggtc tcgaactgcg tcgccgccgg
      841 cagcaggtag accgcgcgct tcgggttcag gtcgtccttg ttgccgggca tcgctgccat
      901 cgccgccgaa gctgacggat agggatcgac gacgaccagc agatcgagct tgtccatcgc
      961 tcgtttcatc tcggcgccgc gcgtctgcga gttgggcgcg tggccccaga agatcaggcc
     1021 gcgcaggttc gaatcctggt cgatcaggtc gttcttctcg agcacgccgt cgatccagcg
     1081 cgagacggtc atgccgggct tggtgagcat gcccggcgcg tactgcttct tgatccactc
     1141 gaagtcgacg ccccagacct tggcgaagtg cttccatgcg ccttcggcga ggccgaagta
     1201 gccgggcaac gagtcggggt tggggccgac gtcggtcgcg ccctggacgt tgtcgtggcc
     1261 gcggaagata ttggcgccgc cgccgctgac gccgacgttg ccgagcgcga gctggacgat
     1321 gcacgacgcg cggacgatcg cgttgccggt cgtgtgctgg gtctggccca tgcaccagac
     1381 gatcgtgctc ggccggttct cggccatcat tttcgcgacc ttgaacaccg tcgcctcgtc
     1441 gacgccgcag acctcctgga ccttgtccgg ggtccacttg gtcatgactt cgtccctgac
     1501 cttgtccatg ccgtagacgc ggtcggcgat gtacttcttg tcttcccagc cgttcttgaa
     1561 gacgtggtgc aggacgccga agaggaacgc gatgtccgag cccgagcgga ttcgcacgta
     1621 ctcgtcggcc ttggccgcgg tgcgcgtgaa gcgcgggtcg acgacgatca tcttgctgcc
     1681 ggtttccttg gcgtgcagca tgtgcagcat cgacaccggg tgcgcctcgg cggcgttcga
     1741 gccgatgtac atcgcgcact tggtgttgcg catgtcgttg tacgagttcg tcatcgcgcc
     1801 gtagccccac gtgttcgcga cgcccgcgac cgtggtggag tggcagatgc gcgcctggtg
     1861 gtcgcagttg ttgctgcccc agaggctcgc ccacttgcgc agcaggtacg actgttcgtt
     1921 gttgtgcttc gacgagccga cgatgaagac cgaatcgggg ccgctctgct tcttgaggtc
     1981 gagcatcttg gcgccgatct cgttcagcgc ctggtcccaa gagatccgct cgtacttgtt
     2041 gccgaccagc ttcatcggcg tcttgaggcg atattcgccg tggccgtgct cgcgcaacgc
     2101 cgcgcccttg gcgcaatgcg cgccgaggtt gaggggagag tcgaacaccg gctcctggcg
     2161 ggtccagacg ccgttctcga cgaccgcgtc gacggcgcag ccgaccgagc agtgcgtgca
     2221 cacggtgcgc cggacgaccg gcttgctcga cgctgtggcc gggtcggcgg cctcggcctt
     2281 cttgacgagg gtgagctgcg aggtggcgag gccgacgccg acgccgacgc cggagcgacg
     2341 caggaaggcg cgccggtcca tcgtcggcac ggcgcggcga acgcctcgcg ccaggcttgc
     2401 gaccagggcc gacgacgcgg cggccgcgtc ggcaaaactc gatgaggaag gcttgcgggt
     2461 caacagcatg atggttcctc agccggtctc aggtgcgcgt ggtttcgtag taccgcaaca
     2521 cgtggtccgt gagccggtag ccctctccct gcgccatgtc gggcgcggcc ttggcgaccg
     2581 cggcgggcgc ctcggcgtgc tgcttgaggg cggtggcggc gagcgcggca ccggcggcga
     2641 cgccggcgcc gacgacgagc tggcgccgtt tcggctgggt ctcggcggat gcaggagcga
     2701 cgacttgcgc gtggcgcgaa ggttgcgttt tcatgcggct cactcctgac gaaatatcgg
     2761 gggccgacat ccctggaatc ccgaaggccc cgccgatggt gaaaggcgat tcgactcgaa
     2821 tctaacagcc caaaatgcct tgtatatccg gtctaacgct cgctgcgatg ctcgtgctgg
     2881 ccagcctgcg ccgcagtccg cgtcacgcat cgaggaggtc gaacgcctgc gcctcgacgg
     2941 cgaagaaatc gcgcgcgaaa cgcgccgcca tggcatagaa atcggcgtcg ggattcgcct
     3001 cgatcgcagt gcacaacgcg tcgacccagc cgcgcaaatg ggaatcgaaa aagcgccgct
     3061 gcgccgccag gttgctcgtc ccggcatcgt cgcccgcgat caggtagcgc atgacctcgc
     3121 acaggctggc gatgtggtcc tcggtctcgt tcatgccgtc gctgcgcgcc aggccgagct
     3181 cgcgcaggct gtggcgcaag gcgacgagcg gcttctcgtt cagcgtgccg gcgatataga
     3241 acgagccgta gagaaagacc tcgggcttgc cgacgccctg gaacaaggtg tcgaactcgc
     3301 gctcgatctg cgcccggtcg agccggcgcg ccgcggcgac gagaccgccc cagctcgcct
     3361 cgaggaaggc gccggcgacc ggcgcttcgg tca
//
LOCUS       DASVHM010000771         4084 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_706399, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000771 DASVHM010000000
VERSION     DASVHM010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4084
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_706399"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..518
                     /locus_tag="VF308_14180"
     CDS             <1..518
                     /locus_tag="VF308_14180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437852.1"
                     /translation="NTPQRSSSQTHLRTTRQFARLDPPHRSEGCPSSRPGVMERDASA
                     PAAHDQFFPSSIAQGCELAGGFGSSHRPEEHFAVPPQRPKPEPRPGHERTGATVAGPR
                     AFLARRGVDRMFPCREEKSETHATTARMAAHPTKANQTLRIMRRCPRSESDVEPVGVI
                     QRSKAFACHAR"
     gene            complement(515..2083)
                     /locus_tag="VF308_14185"
     CDS             complement(515..2083)
                     /locus_tag="VF308_14185"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEX7437853.1"
                     /translation="MQVSRAASLDATAPRFHQRTGTVVLLLCIGQALLWWLAVGTLYS
                     APEIDSAEQFVWAFSLENGYWKHPPAPSWIMHGLMQVLGPSIPLPFVASQFGIAVALA
                     LTWRLGCEFMSPSRSLMAVALTSLVTYHNIGGDSFNHTTALLPFQAATVLLFFLATRR
                     GGLHLWALTGLFAGLSMLVKYVALLPIGGLLLYLLLDRQLHNRRVLAGLGAASVVFAL
                     ALAPHAVWLHRTDFLPFRYAQTVAQPAAGFTSTVLGILDFAQTQLIRLLPLLLGVAFV
                     LWPRAREETFENTPAIGARDRLFLWVSALAPLTLIVLFALVTRTALQSRWGANGFLLS
                     GLLAFALMKRVETQGLLRRTLAFVVTAQVLFVATLTLGKTVLADSFQWRTRANFPGAV
                     LAHEASQVWKAHTDAPLRIVVSDIWLGGNIIANSTTQVAVLIDGHEFKSPWVKEQAVR
                     DCGALVLDDLTSGNGHPPADNPALDALMARASFTGIWNLPWAVAQSQATAQGTGMVRW
                     GIIEPRDPAACRIR"
     gene            2275..3894
                     /locus_tag="VF308_14190"
     CDS             2275..3894
                     /locus_tag="VF308_14190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase family protein"
                     /protein_id="HEX7437854.1"
                     /translation="MSDFFDWSIGYPSTRLPVFGRNIVSTSHPLAAQAGLRMLLRGGN
                     AVDAAIAAAAAMTLLEPCSNGLGSDAFCILWDGQRLHGLNASGPAPAAWTPDYFRRKY
                     GADATVPPTRGWDSVTVPGAVAGWVHLSERFGKLPFGDLLEPAVEIAERGYAVPVVVQ
                     QKWVAATPILREQPGFAEAFLPYGRAPRVGERFAFPAAARALRAIAASRGAALYGGEI
                     GAAAAAHAQAHGGSIRVADFEAYKPEWVETIGIDHAGHRLHEIPPNGQGIAALIALGI
                     ARHFDLASLAVDGVDSQHVQIEAMKLAFADVYRYVADRPGMEFSCEQLLDEGYLASRA
                     RLIDMKRAQVFESGTPPRGGTIYLTAADESGMMVSFIQSNYMGFGSGVVVPGWGVSMQ
                     NRGHGFSLAPGSPNLVAPGKRPFHTIIPAFLTKDGLPQMSFGVMGGNMQPQGHLQTLV
                     RMLDYRQQPQAACDAPRWRFNHGLDINVEAGMNPATVQGLVERGHRIDVISDSYQDFG
                     AGQFIWRLGDPAVEGYVAASDPRRDGQAAAF"
BASE COUNT          681 a         1364 c         1429 g          610 t
ORIGIN      
        1 agaacacgcc ccagcgcagc agcagccaga cccatttgcg cacgacgcgg cagttcgcgc
       61 gactcgaccc cccgcatcgc tcggaaggct gcccctcgtc aaggccaggg gtgatggaac
      121 gggacgcctc ggcgccagcg gcgcacgacc agttctttcc atcctcgatc gcgcaggggt
      181 gcgagcttgc cggagggttc ggatcctccc accgtccaga agagcacttc gccgtgcccc
      241 cgcagcgccc gaaacctgaa ccgcggcccg gccacgagcg caccggtgca acggttgccg
      301 gtccacgcgc ctttctggca cgccgcggtg tagaccgtat gttcccctgc agggaagaga
      361 agtccgaaac ccacgccacg accgccagga tggcggcgca cccgacgaag gcgaaccaga
      421 ccttgcgcat catgcggcga tgccctcggt cggaatcgga cgtcgagccg gtcggggtca
      481 ttcaacgctc gaaggccttc gcgtgccacg cgcgctagcg aatccgacag gcggccgggt
      541 cgcgcggttc gatgattccc cagcgcacca tgcctgttcc ctgcgccgtc gcctgactct
      601 gcgcgacggc ccagggcagg ttccagatcc cggtgaacga tgccctggcc atcagcgcgt
      661 cgagcgccgg gttgtcggcg ggcgggtggc cgttcccgga cgtcaggtcg tcgagaacca
      721 gcgcgccgca atccctcact gcttgttcct tcacccaagg cgacttgaac tcgtggccgt
      781 cgatcaggac ggcgacctgc gtcgtgctgt tggcaatgat gttgccgccc agccagatgt
      841 cggagacgac gatccgcaag ggcgcgtcgg tgtgtgcctt ccagacctgc gacgcctcgt
      901 gggcgaggac cgcaccggga aagttggccc gcgtcctcca ctggaaacta tcggccagca
      961 ccgtcttgcc gagcgtcagc gtggcgacga agaggacctg cgcggtgacg acgaaggcga
     1021 gcgtgcgtcg caagaggcct tgggtttcga cgcgcttcat cagggcaaaa gcgagcagcc
     1081 cgctcaacag gaatccattc gcgccccagc gcgattgcag cgcggttcgc gtcaccagcg
     1141 cgaagagaac gatgagggtc aggggggcca gggccgacac ccacaggaag agacgatcgc
     1201 gggcaccgat tgccggtgtg ttctcgaagg tctcttcccg ggcgcgaggc cacagcacga
     1261 acgcgacacc cagcagcagc ggcaggagcc ggatcaattg ggtctgcgcg aaatccagaa
     1321 tgccgagcac ggtcgaggtg aatcccgccg ccggctgggc cacggtctgg gcatagcgaa
     1381 acggcaggaa atcggttcga tggagccaga ccgcgtgcgg tgcgagcgcc agcgcaaaga
     1441 ccacgctggc cgcgccgagg ccggcgagca cgcgacggtt gtgaagctgg cggtcgagca
     1501 gcaggtagag gagcagccca ccgatgggca gcagcgccac gtacttgacc agcattgaga
     1561 gacccgcgaa caggccggtc aacgcccata ggtggaggcc gccgcgccgt gtggccagga
     1621 agaagagcag caccgtcgcc gcctggaagg gcagcagcgc ggtggtgtga ttgaaactgt
     1681 cgccgccgat gttgtggtag gtcaccagcg acgtgagggc cacggccatc aacgagcgcg
     1741 agggcgacat gaattcgcag ccgagccgcc aggtgagcgc cagtgcgacc gcaatcccga
     1801 actgggacgc cacgaatggc agcggaatcg acgggcccag cacctgcatc aggccgtgca
     1861 tgatccacga aggggccggc gggtgcttcc agtatccgtt ctcgagcgag aaggcccaga
     1921 cgaactgctc ggcggaatcg atctcgggcg cgctgtagag ggtgccgacc gcgagccacc
     1981 acaggagtgc ctggccgatg cacagcagca gcacgactgt cccggtgcgc tggtggaacc
     2041 gtggcgctgt ggcgtccagc gatgcggcgc ggctgacctg catgggggcg atgcggcggc
     2101 tgttgtttta ggattcgggc ccgtacgggg agggctcgaa gggggcggcc tgcgatccta
     2161 ggtgagggcc gggcacgcga gaacaggggt ttgcgcgcgt tgtggagaga aatcgacgac
     2221 ggctcgatct tccggcccgc ggataatcaa acgccccggt aactgcgaag ttccatgtcc
     2281 gacttcttcg attggtcgat cggctatccg tcgacgcggc tgccggtttt cggccgcaac
     2341 atcgtctcga cctcccatcc gctcgccgcg caggccggcc tgcgcatgct gctgcgaggc
     2401 ggcaacgcgg tcgatgcggc gatcgccgcg gccgcggcga tgacgctgct cgagccgtgc
     2461 agcaacgggc tcggctcgga cgcgttctgc atcctctggg acggccagcg gctgcacgga
     2521 ctgaacgcct cgggccccgc gccggcggcg tggacgccgg actatttccg gcgcaagtac
     2581 ggcgccgacg cgacggtgcc gccgacacga ggctgggatt cggtgacggt gccgggcgcg
     2641 gtcgccggct gggtgcacct gagcgagcgc ttcggcaagc tgcccttcgg cgatctgctc
     2701 gagccggccg tcgagatcgc cgagcgcggc tacgcggtgc cggtggtggt gcagcagaag
     2761 tgggtcgcgg cgacgccgat cctgcgcgaa cagcccggct tcgccgaagc gttcctgccg
     2821 tatggccgcg cgccgcgcgt cggcgagcgc ttcgcctttc cggcggccgc gcgcgcgctg
     2881 cgtgccatcg cggcgagccg gggcgcggcg ctttatggcg gtgagatcgg cgccgccgcg
     2941 gcggcgcatg cgcaggccca tggcggctcg atccgcgtcg ccgatttcga ggcttacaag
     3001 cccgaatggg tcgagaccat cggcatcgac catgcgggcc atcgcctgca cgagatcccg
     3061 ccgaacggcc aaggcatcgc ggcgctgatc gcgctcggca tcgcgcgcca cttcgacctc
     3121 gcttcgctgg cggtcgacgg cgtcgattcg cagcacgtgc agatcgaggc gatgaagctc
     3181 gccttcgctg acgtctatcg ctatgtcgcc gatcgcccgg gtatggagtt cagctgcgag
     3241 caactgctcg acgaaggcta tctcgcctcg cgcgcacgcc tcatcgacat gaagcgggcc
     3301 caggtcttcg aatccggcac gccgccccgg ggcggcacca tctacctcac cgcggccgac
     3361 gagagcggca tgatggtgag cttcatccag agcaactaca tgggcttcgg ctccggcgtc
     3421 gtcgtgcccg gatggggcgt ctcgatgcag aaccggggcc acggtttcag cctcgctccc
     3481 gggagcccga acctcgttgc gccgggcaag cgcccgttcc ataccatcat ccccgccttc
     3541 ctcacgaagg acggcctgcc gcagatgagc ttcggcgtga tgggcggaaa catgcaaccg
     3601 caaggccact tgcagacgct cgtgcgcatg ctcgactacc ggcagcagcc gcaggccgcg
     3661 tgcgacgcgc cgcgctggcg cttcaaccat ggcctcgaca tcaacgtcga ggcggggatg
     3721 aatccggcca cggtgcaagg actcgtcgag cgcgggcatc gcatcgacgt catcagcgac
     3781 agctaccagg atttcggcgc cggccagttc atctggcgct tgggcgatcc ggccgtcgag
     3841 ggttatgtcg cggcgagcga cccgcgtcgc gacggtcagg cagcggcgtt ctgatggccc
     3901 ggcgtggggt tctcgccgcg ctcgtcattt gcgatcatct cggccgccga ggtctttctg
     3961 ctgcgcgtcg atcgcgtcct gcatcaggcg ctcgacgtcg gcggcgggaa gcgtcgacga
     4021 ggcggcttcg gcggggcgcg tccagcgcgt gatctgcggc caggcgaaca cggcgacgac
     4081 cagc
//
LOCUS       DASVHM010000772         1943 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1209325, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000772 DASVHM010000000
VERSION     DASVHM010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1943
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1209325"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..638
                     /locus_tag="VF308_14195"
     CDS             <1..638
                     /locus_tag="VF308_14195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007832520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7437855.1"
                     /translation="ILGLLGPNGSGKSTFINVVSGHFAASGGRVVFEGREIGGLPAHR
                     IARAGIARTYQIPRPFAHLTVLENVALAAMFGGATLGLRAATAEAHNWLHFTGLDDKA
                     AARPDELNLHQRKFLELARALASRPRLVLLDEVLCGLTPSEIDAAVALIRRIRDQGST
                     IVFVEHVMRAVLALTDRVVVFNHGQLLAEGTASDVMQRPDVMTAYLGRAHA"
     gene            631..1335
                     /locus_tag="VF308_14200"
     CDS             631..1335
                     /locus_tag="VF308_14200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017524063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437856.1"
                     /translation="MLEVRDLHVAYGAAPALSGVSLHVAEGELLCVVGPNGAGKTTLI
                     NAVAGILRARSGTIVMAGTALQDLPPHRTCGAGIAVVPEGRRLFTGMTVLENLELGSY
                     LPRAKALRRESLEQALALFPMLKERLASPAGELSGGQQQMVAIARALMARPRLLLLDE
                     PSLGLSPLIVHDVFDAIRRINAEGMSVLLVEQNVAMAMQVSTRAYVLEEGHIVAEGAP
                     DALLARPEIQRAYLGL"
     gene            complement(1343..>1943)
                     /locus_tag="VF308_14205"
     CDS             complement(1343..>1943)
                     /locus_tag="VF308_14205"
                     /inference="COORDINATES: protein motif:HMM:NF013847.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase family protein"
                     /protein_id="HEX7437857.1"
                     /translation="PFTMLQQAQNDFYASEEEAALDYAAAVNEEIRDLFAAGADVVQI
                     DEPYMQARPEKARQYGLKALARALEGITGTTAVHICFGYAAVIHQRPSGYSFLPELAQ
                     CSCKQVSIETAQSGLDCKVLEQLADKQIMVGCLDLSDMRIETPEVVAARVRRALPFVA
                     AERVILAPDCGMKYLPREVADGKLRAMVAAAELLRREYA"
BASE COUNT          276 a          662 c          687 g          318 t
ORIGIN      
        1 agatcctcgg cctgctcggc cccaacgggt cgggcaagtc gactttcatc aatgtcgtca
       61 gcggccattt cgcggcgagc ggcgggcgcg tcgtgttcga agggcgcgag atcggcgggc
      121 tgcccgcgca tcgcatcgcc cgcgccggaa tcgcgcggac ctaccagatt ccgcgaccct
      181 tcgcgcattt gaccgtgctc gagaacgtgg cgctcgcggc gatgttcggc ggcgccacgc
      241 tcggtctgcg cgctgcgact gccgaggcgc acaactggct gcatttcacc ggtctcgacg
      301 acaaggccgc ggcgcgaccc gacgagctga acctgcacca gcgcaagttt ctcgaactgg
      361 cgcgggcgct cgcctcgcgc ccgcgcctcg tcctgctcga cgaggtgctg tgcggcctca
      421 cgccgagcga gatcgacgct gccgtggcgc tgatacggcg cattcgcgac cagggctcga
      481 cgatcgtatt cgtcgagcac gtgatgcgcg ccgtgctggc gctcaccgat cgggtcgtgg
      541 tgttcaacca cggacagctg ctggccgagg gcacggccag cgacgtgatg cagcgcccgg
      601 acgtgatgac ggcatacctg gggcgcgccc atgcttgagg tgcgcgacct gcacgtcgcg
      661 tacggcgcgg cgccggcgct ctcgggcgtg tcgctgcacg tggccgaggg cgagctcctc
      721 tgcgtggtcg ggcccaacgg ggccggcaag acgacgctga tcaacgccgt cgccggcatc
      781 ctgcgcgcaa ggtcgggaac gatcgtgatg gccgggactg cgctgcagga tctgccgcct
      841 caccgcacct gcggcgcggg aatcgccgtg gttccggaag gccggcgtct cttcaccggc
      901 atgacggttc tggaaaacct cgaactcggc agctacctgc cgcgtgcgaa ggcgctgcgg
      961 cgcgagtcgc tcgagcaggc gctggcgctt ttcccgatgc tcaaggaaag actcgcgagt
     1021 cccgcgggcg aattgtcggg cggccagcag cagatggtcg ccatcgcgcg cgcgctgatg
     1081 gcccgtccgc gcctgctgct gctcgacgag ccgtcgctcg gactctcgcc cttgatcgtg
     1141 cacgacgtgt tcgacgcgat ccggcgcatc aacgccgagg ggatgtcggt gctgctggtc
     1201 gagcagaacg tcgcgatggc gatgcaggtc tcgacccgtg cctacgtgct cgaggaaggc
     1261 cacatcgtcg ccgaaggcgc acccgacgcg ctgctcgcgc gcccggaaat ccagcgcgcc
     1321 tacctggggc tgtagcgcgg tttcacgcgt actcgcggcg cagcagctcg gccgccgcca
     1381 ccatcgcgcg cagcttgccg tctgcgacct cgcgtggcag gtacttcatg ccgcaatcgg
     1441 gcgccaggat gacgcgttcg gcggcgacga agggcagggc gcggcgcacg cgcgcggcga
     1501 cgacctcggg tgtctcgatg cgcatgtccg agaggtcgag gcagcccacc atgatctgct
     1561 tgtcggcgag ctgctcgagc accttgcagt cgagaccgga ctgcgccgtc tcgatcgaga
     1621 cctgcttgca gctgcattgg gccagttcgg ggaggaacga gtagccgctc ggccgctggt
     1681 ggatcaccgc cgcgtagccg aagcagatgt gcacggccgt cgtgccggtg atgccttcga
     1741 gcgcgcgggc cagcgccttc aggccgtatt ggcgcgcctt ctcggggcgc gcctgcatgt
     1801 acggctcgtc gatctggacc acgtcggcgc ccgcggcgaa gaggtcgcgg atctcctcgt
     1861 tgaccgcggc cgcgtagtcg agcgcggctt cttcctcgct cgcgtagaaa tcgttctggg
     1921 cctgctgcag catcgtgaac ggg
//
LOCUS       DASVHM010000773         1501 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_271827, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000773 DASVHM010000000
VERSION     DASVHM010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271827"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1501
                     /gene="dnaE"
                     /locus_tag="VF308_14210"
     CDS             <1..>1501
                     /gene="dnaE"
                     /locus_tag="VF308_14210"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEX7437858.1"
                     /translation="GVTDYEAHDALICIAEGRLLSESDRRQLTPEHRFKSRAEMRELF
                     ADLPEALASTVEIAERCAFRPRTHQPILPRFSLGEGGSVLDEVEELRKRAEAGLTLRL
                     TTAGVAPGHTVDEYRERLDFELGVIANMKYPGYFLIVADFIQWAKAKGIPVGPGRGSG
                     AGSLVSYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQDRRDEVIHYVQQRYG
                     RDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLCKLVPQNPANPVTLSRAIEDEP
                     KLQAEAENDPVVKRAFDIARKLEGLTRHASTHAAGIVIGDRPLTELVPLYRDPKSDMP
                     VTQFNMKMVEQAGLVKFDFLGLKTLTVLQTAVALVARRGIEIDLTAIPLDDAKTYDLL
                     ARAEAVGVFQLESAGMRRALLDMRPDRFEDIIALVALYRPGPMANIPTYCARKHGLEP
                     PEYIHPKLEPILKETFGVIVYQEQVMQAAQILAGFTLGQADLLRRAMGK"
BASE COUNT          257 a          528 c          471 g          245 t
ORIGIN      
        1 ccggcgtcac cgactacgaa gcgcatgacg cgctgatctg catcgccgaa ggccgcctgc
       61 tgtcggagag cgaccgccgc cagctcacgc ccgagcatcg cttcaagagc cgcgccgaga
      121 tgcgcgaact gttcgccgat ctgccggagg cgctcgccag cacggtcgag atcgccgagc
      181 gttgcgcgtt ccgcccgcgc acccatcagc cgatcctgcc gcgcttttcg ctcggcgagg
      241 gcggcagcgt gctcgacgaa gtcgaggaat tgcgcaagcg cgccgaggcc ggcctcacgc
      301 tgcggctcac gaccgccggc gtcgcgcccg gccacacggt cgacgaatat cgcgagcggc
      361 tcgacttcga gctcggcgtc atcgcgaaca tgaaatatcc cggctacttc ctgatcgtcg
      421 ccgatttcat ccagtgggcg aaggcgaagg gcattccggt cgggcccggc cgcggctccg
      481 gcgccggctc gttggtgtcc tacgcgctca ccatcaccga tctcgatccg atccgcttcg
      541 gtctgctgtt cgagcgcttc ctcaatcccg agcgcgtgtc gatgcccgac ttcgacatcg
      601 acttctgcca ggaccgccgc gacgaagtca ttcattacgt gcagcagcgc tacggccgcg
      661 accaggtcgc gcagatcatc accttcggca cgctgcaggc gcgcggcgtg ctgcgcgacg
      721 tcggccgcgt gttgcagatg ccgtacgggc aggtcgacaa gctgtgcaag ctggtgccgc
      781 agaacccggc caatccggtg acgctctcgc gcgccatcga ggacgaaccc aagctgcagg
      841 cggaagccga gaacgatccg gtggtcaagc gcgcctttga catcgcccgc aaactcgagg
      901 gcctgacgcg ccacgcctcc acccacgccg ccggcatcgt gatcggcgac cggccgctca
      961 ccgagttggt gccgctctat cgcgatccga agtccgacat gccggtcacc cagttcaata
     1021 tgaaaatggt tgagcaggcg ggtctggtga aattcgactt cctcggcctg aagacgctca
     1081 ccgtgttgca gaccgcggtc gcgctggtgg cccggcgcgg catcgagatc gatctcaccg
     1141 ccatcccgct cgacgacgcc aaaacctacg acctgttggc gcgggccgaa gcggtcggcg
     1201 tgttccaact ggaaagtgcc ggcatgcggc gcgcgctgct cgacatgcgg cccgaccgtt
     1261 tcgaggacat catcgcgctg gtcgcgctct atcgccccgg cccgatggcg aacatcccga
     1321 cttattgcgc gcgcaagcat gggctggagc cgccggaata catccatccc aagctggagc
     1381 cgatcctgaa ggagaccttc ggcgtcatcg tctaccagga acaggtgatg caggccgcgc
     1441 agatcctcgc cggcttcacg ctcggtcagg cggatctctt gcgccgcgcc atgggcaaga
     1501 a
//
LOCUS       DASVHM010000774         4073 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_199757, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000774 DASVHM010000000
VERSION     DASVHM010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4073
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199757"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(533..1633)
                     /locus_tag="VF308_14215"
     CDS             complement(533..1633)
                     /locus_tag="VF308_14215"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013542872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000034 - adenine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006146 - adenine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HEX7437859.1"
                     /translation="MLAAIPGTPIFDEAPVIDFDSIPRSRLPDLLRAMPKAELHIHIE
                     GSLEPELIFALAERNGVALAYPNVEALRAAYAFTDLQSFLDIYYAGASVLLHERDFAD
                     MATAYLQRAAADNVIHAEIFFDPQTHTARGVDIGTVIRGLAGACERGRRELGLSSSLI
                     LCFLRHLDEADALATLASALPYREHFIGVGLDSGERGNPPEKFARVFAKARGAGLHLV
                     AHAGEEGPPAYISSALDVLRVERVDHGVRCIEDPALVRRLAREGIALTVCPLSNLKLR
                     VFGSMAEHKLAELLAAGLKATVNSDDPAYFGGYLNQNFIEAFAALPQLGAREAYTLAR
                     NSFEASFVDAHAQRAMVERLDAVFGRFAGGAA"
     gene            complement(1680..2852)
                     /locus_tag="VF308_14220"
     CDS             complement(1680..2852)
                     /locus_tag="VF308_14220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7437860.1"
                     /translation="MTLSKRTWMKLAGWSSLAAIAALAGCSKKEETVVVVAPPASAPM
                     AAAPAAPAASGPLKVAFAYVGPVGDGGWTFAHDNGRKALEKEFGDKIVTSFVEKVPEA
                     ADAERVFRDMASQGNTLIFGTTFGYMEPMLKVAADLPGVKFEHATGYKSADNMRTYDT
                     RTYEGAYMAGVIAGGMTKTNTLGVVGSIPIPEVIRNINSFTLGAQSVNPAVKTKVVWV
                     NEWFNPPKETEAAQSLMNGGADVLMQNTDSPAVLQTAEKAGKYAFGWDSDMTAYGPKA
                     HLASSQINWGPYYIKATRDALDGTWKGNTGSWWGVKEGAIDLVSVSDKVPADLKAKLD
                     KVRAGLKDGSFVIWKGPITGSDGKEVLAKDAVADDKFLGGIKFYVKGVEGTVPGAK"
     gene            complement(2925..3845)
                     /locus_tag="VF308_14225"
     CDS             complement(2925..3845)
                     /locus_tag="VF308_14225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013593596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437861.1"
                     /translation="MEQFALLVAATLNSGTVLAFAALGLLINERAGIVNLGAEGMMLV
                     AAVAGFATAFHTGNDWLAFGAGALAGALLAAAFGVLVIWLNTNQYATGLALSLFGAGF
                     SAFAGIRYTQENLTERPRFEIPGLADIPFVGPALFRQHPMVYIAIALTAALAWFLYRS
                     RAGLVLRAVGESPESAHALGYPVRRIRLAAVMVGGALCGISGAYISVVYTPLWVEGMV
                     AGKGWIALALTTFATWRPARVLLGAYLFGGVTMLQFHLQGEGVQIASQFLTMMPYLAT
                     ILVLVLISRNAAFIRINMPASIGKPFFPGG"
     gene            complement(3846..>4073)
                     /locus_tag="VF308_14230"
     CDS             complement(3846..>4073)
                     /locus_tag="VF308_14230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012839491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437862.1"
                     /translation="LPKSLTGVFQGLLLFTLLACDTLIAYRIRWISARTTASPSAPVS
                     AQSQSQSQSQSLDDAPLNPVVASSTLPARGA"
BASE COUNT          679 a         1336 c         1408 g          650 t
ORIGIN      
        1 agagggaggt gtcgatcagc gtgccgcgcg tgcgcaggcc gtaatagcga ttcggcctga
       61 cgcggcgcag gataagcgga acgctgatca acgctatcag cgcgcaggcg acgtagatgt
      121 tgattcgggt gtccatgcgg agtcggcagc ttgggctgga gtcgaaacat accgcaagtc
      181 gcgaggcccc gaacgccgga ccgccgccgg accggaaacc gcccctcagg tgccggtcga
      241 ttgatgcgcc tttggaacca ataccgggcc tcgatctcat tggacgacgg gccctgtcgt
      301 tcctagtatt cagcggtccg gccggaaacg attgcggttc ctcgattgat gaatcttcct
      361 catggtcttt ggaccacggt caggcccacc aggagatgcc aatgaagacc cgaaccgact
      421 acgccgtcca catcgccggc gccctcctcg cagtgttcat gggcgccggc agcgtcgcgc
      481 ttgccggcgg cttgttcgac ggcagcctcc gggacgcgtc gagccgcgcg acttacgcgg
      541 ctccgccggc gaacctgccg aacaccgcat cgagtcgctc gaccatcgcg cgctgcgcat
      601 gcgcgtcgac gaagctcgcc tcgaaactgt tgcgggccag cgtgtaagcc tcgcgcgcgc
      661 cgagctgcgg caatgcggcg aaggcttcga tgaaattctg gttcaggtag ccgccgaaat
      721 aggccgggtc gtcggagttg acggtcgcct tcaggcccgc ggccagcagt tcggcgagtt
      781 tgtgttcggc catgctgccg aacacgcgca gcttcagatt ggagagcggg cacaccgtga
      841 gcgcgatgcc ctcgcgcgcg agtcggcgca ccagcgccgg gtcctcgatg cagcgcacgc
      901 cgtggtcgac gcgctcgacc cgcaacacgt cgagcgcgct cgagatgtac gccggcggcc
      961 cctcctcgcc ggcatgggcg acgaggtgca ggcctgcgcc acgcgccttc gcgaagaccc
     1021 gcgcgaactt ctccggcgga ttgccgcgct cgccgctgtc gaggccgacg ccgatgaaat
     1081 gctcgcgata tggcagcgcc gaagcgagcg tcgccagcgc atcggcttcg tcgagatggc
     1141 gcaggaagca caggatcagg ctgctcgaga ggccgagctc gcgccgcccg cgctcgcagg
     1201 cgccggcgag gccgcggatc acggtgccga tgtcgacgcc gcgcgccgtg tgggtctgcg
     1261 gatcgaaaaa aatctcggcg tggatgacgt tgtcggcggc ggcgcgttgc aggtacgcgg
     1321 tcgccatgtc ggcgaaatcg cgctcgtgca gcagcacgct tgcgccggcg tagtagatgt
     1381 cgagaaagct ctgcagatcg gtgaacgcat aggccgcgcg cagcgcctcg acgttcggat
     1441 acgccagcgc gaccccattg cgctcggcca gcgcgaagat cagctccggc tcgagcgagc
     1501 cctcgatgtg gatgtgcagt tcggccttcg gcatcgcccg cagcagatcc ggcaggcgcg
     1561 aacgcgggat ggaatcgaag tcgatcacgg gagcttcgtc gaagatcggg gtgccgggaa
     1621 tcgcggccag catgagcaag gccgcccgcg gcggccttgc ccgaaccaga ctcgcgcgcc
     1681 tatttggcgc ccgggaccgt gccttccaca cccttcacat agaacttgat gccgccgagg
     1741 aacttgtcgt cggcgaccgc gtccttggcg agcacttcct tgccgtcgga gcccgtgatc
     1801 gggcccttcc agatcacgaa gctgccgtct ttcaggccgg cccgcacctt gtcgagcttg
     1861 gccttcaggt cggcaggcac cttgtcggag accgacacca ggtcgatcgc gccttccttg
     1921 acgccccacc acgagccggt gttgcccttc caggtgccgt cgagcgcgtc gcgcgtcgcc
     1981 ttgatgtagt acggacccca gttgatctgg ctcgacgcga ggtgcgcctt cgggccgtag
     2041 gcggtcatgt cactgtccca gccgaaggcg tacttgccgg ccttctcggc ggtctgcagc
     2101 accgccggcg aatcggtgtt ctgcatcagc acgtcggcgc cgccgttcat cagcgactgc
     2161 gccgcttcgg tctccttcgg cgggttgaac cattcgttga cccagaccac cttggtcttg
     2221 acggccggat tcaccgactg cgcgccgagc gtgaagctgt tgatgttgcg gatcacttcc
     2281 ggaatcggga tcgagccgac aacgccgagc gtgttggtct tggtcatgcc gcccgcgatc
     2341 accccggcca tgtaggcgcc ttcataggtg cgggtgtcgt aggtgcgcat gttgtcggcg
     2401 ctcttgtagc cggtggcatg ctcgaacttc acgccgggca ggtcggcggc gaccttcagc
     2461 atcggttcca tgtagccaaa ggtggtgccg aagatgaggg tgttgccctg gctcgccatg
     2521 tcgcggaaca cgcgctcggc atccgccgct tcgggcacct tctcgacgaa gctggtgacg
     2581 atcttgtcgc cgaactcctt ttcgagcgcc ttgcggccgt tgtcgtgcgc gaaggtccag
     2641 ccgccgtcgc cgaccgggcc gacataggcg aacgcgacct tcaacgggcc cgatgcggca
     2701 ggcgccgcag gcgctgcggc catcggcgcc gacgcgggcg gcgcgaccac gacgacggtt
     2761 tcttccttct tgctgcagcc cgcgagcgca gcgatggcgg ccagcgaact ccagccggcg
     2821 agcttcatcc aggttcgttt tgagagggtc atggggtctc caggttgaaa gaaaaccgtg
     2881 tcggcgacgc cgtggcgcga cggtcagcgc gaattatcga acaatcagcc gcccggaaag
     2941 aagggcttgc cgatcgacgc gggcatgttg atgcggatga acgcggcgtt gcgcgagatc
     3001 agtaccagca ccaagatcgt cgcgaggtac ggcatcatcg tcaggaactg gctcgcgatc
     3061 tgcacgccct cgccctgcag gtgaaactgg agcatcgtga cgccgccgaa caggtaggcg
     3121 ccgagcagca cgcgggccgg gcgccaggtc gcgaacgtgg tcagcgcgag cgcgatccag
     3181 cctttgcccg ccaccatccc ctcgacccag agcggcgtgt agacgaccga gatgtaggcc
     3241 cccgaaatgc cgcacagcgc gccgccgacc atcactgcgg caaggcggat ccggcgcacc
     3301 gggtagccga gcgcatgggc agactcgggc gattcgccga ccgcgcgcag caccagcccg
     3361 gcacgcgagc ggtacaggaa ccaggccagc gcggccgtca acgcgatcgc gatgtagacc
     3421 atcgggtgct gcctgaagag cgccgggccg acgaacggga tgtcggccag gcccgggatt
     3481 tcgaagcgcg gccgttcggt gaggttttcc tgggtgtagc ggatgccggc gaaggccgag
     3541 aagcccgcgc cgaacaggct gagcgcgagg ccggtcgcgt actggttggt gttgagccag
     3601 atcacgagca cgccgaaggc cgccgcgagc agcgcgccgg cgagcgcgcc ggcgccgaag
     3661 gcgagccagt cgttgccggt gtgaaaggcg gtggcgaatc cggcgacggc ggcgaccagc
     3721 atcatccctt cggcgccgag gttgacgatg cccgcgcgct cgttgatgag caggccgagc
     3781 gcggcgaacg cgagcaccgt gcccgagttg agggtcgcgg cgacgaggag cgcgaactgt
     3841 tccatctacg cgcctcgtgc gggcagcgtc gacgaggcga cgaccgggtt gagcggcgcg
     3901 tcgtcgagcg actgcgattg cgactggctc tgcgactgcg ccgacacggg ggcagatggc
     3961 gacgccgtcg tgcgcgccga gatccagcgg atgcgatacg cgatcagcgt gtcgcaggcg
     4021 agcagcgtga agagcagcag cccctggaac acgcccgtca gcgacttcgg cag
//
LOCUS       DASVHM010000775         1918 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_54651, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000775 DASVHM010000000
VERSION     DASVHM010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54651"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..400
                     /locus_tag="VF308_14235"
     CDS             <1..400
                     /locus_tag="VF308_14235"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HEX7437863.1"
                     /translation="AVIGLDTNVLVRYIAQDDSRQSAQAGKLIESFTQEAPGFVSLVT
                     LAETVWVLEDVYATRREQIARIVETLLQTQTLVVQTPELVWQALRGFEASKADFADHL
                     VERSGAAAGCTATVTFDKAAARGAGMQLMA"
     gene            complement(417..1520)
                     /locus_tag="VF308_14240"
     CDS             complement(417..1520)
                     /locus_tag="VF308_14240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX7437864.1"
                     /translation="MFKNLVRAGTSVLVALLAASTATTQAQPRTPLQVGFVYVSPVGE
                     AGWSYQHDLGRLEMERALGARVRTTGVESVAEGADSERVIRDLARQGNGLIFATSFGY
                     LEPTLRVAADFPSVRFEHAGGYKTAPNVNTYDARYYEARYLAGLLAGSSSRSGVAGYV
                     AGFPVPEVVQGINAFALGMREVNPKAVVKVLWLDTWFDPVREAEAARTLIDQGADVLT
                     NHSASPAVAQAAQAAFRSKGVRFVGYQSDMHAFSPDAQLGAVTHHWGAYYTQVARAVL
                     DGTWSPQPVWGGIAQGFVDLTALDQALPTAVRSRIEARRNAIVAGSFKPFSAPLVDNR
                     GKVRLARGTLDDRAIATMNWFVEGVVGTVPARP"
     gene            complement(1590..1838)
                     /locus_tag="VF308_14245"
     CDS             complement(1590..1838)
                     /locus_tag="VF308_14245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011657848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1272 domain-containing protein"
                     /protein_id="HEX7437865.1"
                     /translation="MLQLRPNCECCDRDLPPEATEARICTFECTFCASCVDTVLHGIC
                     PNCGGEFVRRPRRPAAMLAKYPASTERVLKPGACMKAA"
BASE COUNT          318 a          646 c          648 g          306 t
ORIGIN      
        1 cgcggtgatc ggtctggaca ccaacgtcct ggtccgctat atcgcacagg acgattcgcg
       61 ccaatcggct caggccggca agctgatcga atcgttcacg caagaagcgc cgggtttcgt
      121 ctctctcgtg acgcttgccg agacggtctg ggtgctcgaa gacgtctacg cgacgaggcg
      181 agaacagatc gcgcgaatcg tcgaaacgct cttgcagacc cagacgctcg tcgtgcagac
      241 gcccgaactc gtttggcagg ccctgcgcgg attcgaggcc agcaaggccg actttgccga
      301 ccatcttgtc gagcgctcgg gcgcagccgc gggatgcact gcgacggtga cgttcgacaa
      361 ggccgccgca cgtggcgcgg gaatgcagtt gatggcctga cgcgcccgcg ggcgcgtcag
      421 ggtcttgccg gcaccgttcc gacgacgcct tcgacgaacc agttcatcgt cgcgatcgcc
      481 cgatcgtcga gcgtccctct ggccaggcgc accttgcccc ggttgtcgac gagcggcgcc
      541 gagaacggct tgaagctacc ggccacgatg gcgttgcggc gcgcctcgat gcgcgaccgg
      601 accgccgtcg gcaatgcctg atcgagagca gtcaggtcga cgaacccctg cgcgattccg
      661 ccccacaccg gctgcggact ccacgtcccg tcgagcaccg cgcgcgcgac ctgcgtgtag
      721 taggcgcccc agtggtgggt gacggcaccg agttgcgcgt ccggagagaa cgcatgcatg
      781 tcgctttgat aaccgacgaa gcgcacgccc ttcgacctga acgcggcctg cgcggcctgc
      841 gccaccgccg gcgacgcgct gtggttggtc agcacgtcgg ctccctggtc gatgagcgtg
      901 cgcgccgcct cggcctcgcg caccgggtcg aaccaggtgt cgagccagag caccttcacg
      961 accgccttcg gattgacctc gcgcatgccg agcgcgaagg cgttgatgcc ctgcaccacc
     1021 tcgggcaccg gaaagcccgc gacatagccg gccacgccgc tcctgctgct cgagccggcg
     1081 agcaacccgg ccagatagcg tgcctcgtag tagcgcgcgt cgtaggtatt gacgttcggc
     1141 gcggtcttgt agccgccggc gtgctcgaat ctcaccgacg ggaaatcggc cgcgacgcgc
     1201 aaggtcggct cgaggtagcc gaagctggtc gcgaaaatga gcccattgcc ctgacgcgcg
     1261 agatcgcgga taacccgttc cgaatcggcg ccctcggcga ccgattcgac ccccgtcgtg
     1321 cgcacccttg cgccgagggc gcgctccatc tcgaggcgcc cgaggtcgtg ctggtagctc
     1381 cagccggctt cgccgaccgg gctcacgtag acgaagccga cctgcaacgg cgtgcggggt
     1441 tgggcctggg tggtcgcggt cgaagccgcg agaagcgcga ccagcacgga cgtgccggcg
     1501 cgaacgaggt ttttgaacat ggtgttcctc tacatggccc cattcgaaga agaccgcctg
     1561 cgggggcacg caggcggcag cgaaggcggc tacgcagcct tcatgcaagc tcccggcttg
     1621 agcacccgtt cggtcgaagc cgggtacttg gcgagcatcg ccgcagggcg gcgcggacgg
     1681 cgcacgaatt caccaccgca gttcgggcag atgccgtgca gcacggtgtc gacgcaggac
     1741 gcgcagaagg tgcattcgaa cgtgcagatg cgcgcctcgg tcgcttcggg cggaaggtcg
     1801 cggtcgcagc attcgcagtt cggtctgagt tgcagcatcc gggtcgtcct tctcgctcag
     1861 ttcggtgccg cgacggtcat caacatgcgc gtcatcaggt agaggcgcgg cacgatcg
//
LOCUS       DASVHM010000776         3725 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1425841, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000776 DASVHM010000000
VERSION     DASVHM010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3725
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1425841"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..936
                     /locus_tag="VF308_14250"
     CDS             <1..936
                     /locus_tag="VF308_14250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005795302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437866.1"
                     /translation="GVVLTPHPQAHALYADKRQLALFSDAAQLQSLGVPEATRQVLLE
                     HVPRTEVVDGADAQHLWEARRGLFFKPVAGFGSRAAYRGDKLTRRVWREILAGDYVAQ
                     AIVAPGERMLDEHDPAKAMKFDLRAYAYDGAVQWVAARLYQGQTTNFRTPGGGFAPVY
                     STVDASGRTLQAGADEGDVGAGHASYVFLLDDAGGVHAVPHALYVALARAQAAAPALA
                     GRTLRLADWYVRLKNAAPNTVVNETYSLVRFDAQGRIDWATTPAAHSHRHDAATVPDD
                     AGWPTVPERERMRALLFDGPESPAAPSSAGPTASV"
     gene            complement(1051..1653)
                     /locus_tag="VF308_14255"
     CDS             complement(1051..1653)
                     /locus_tag="VF308_14255"
                     /inference="COORDINATES: protein motif:HMM:NF013935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit D"
                     /protein_id="HEX7437867.1"
                     /translation="MSDATPTRSAVIEMKDERRAMHEGNVFLDEKCLLLAGEILRELD
                     RFGRLQSEFLLLHETALVALQAAVARHGLEGLEVYPPADLAAAQVRFVARSLMGVRLQ
                     QAEWVAGAAPAPEAVQPSPEAEACRKAFAGVLAGAAGLAAVSGNLERLSLEYRRSVRR
                     ARALQDVMLPELDRSIGDIEGRLEELEQEDAIWMRQGAVG"
     gene            complement(1650..3023)
                     /locus_tag="VF308_14260"
     CDS             complement(1650..3023)
                     /locus_tag="VF308_14260"
                     /inference="COORDINATES: protein motif:HMM:NF003235.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit B"
                     /protein_id="HEX7437868.1"
                     /translation="MLLTVEGAATRLEGPLLFLRRTLDVGLYDAVEVRGSDGRARLGR
                     IAAIDDQFMTIEVLESTAGLSLEGSVVRFYGEPMTFGVGPGILGRVFNGVGQVIDGGP
                     PVAAHRKVPIDGLPMNPVARALPRDFIETGISTLDLMNSLVRGQKLPLFSGGGLPHDR
                     LAVEIASHARLRQGGADFVIVFAGIGVPYDSAEYFRRSLEQGGALERTALFLNLASDS
                     STQRLLTPRFALSAAEYLAFVEGKHVLAILTDMTNYCEALREVSSSKGEIPSRKGFPG
                     YMYSDLATLFERAGCLRGTHGTLTQLSILTMPADDIGHPIPDLTGYITEGQIVLSRDL
                     DRRGIYPPVNVLPSLSRLMKDGTGGKYTDPDHPALASQLYSAYARAAQARVLASVVGE
                     EGLADTDRKYLSFGTAFEQILASQAEPRTLEQSMAIGWTLLADLPKSELTRLSDAQIA
                     AHIEGRP"
     gene            complement(3007..>3725)
                     /locus_tag="VF308_14265"
     CDS             complement(3007..>3725)
                     /locus_tag="VF308_14265"
                     /inference="COORDINATES: protein motif:HMM:NF012236.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437869.1"
                     /translation="AYLSSRLADFYERAALVETLGGTTGSVTVMGAISPPSGDFSEPV
                     TSHTKRYVKAFWALDVKRAQARFYPAIHPLQSYAEDAREFAPWWAAQGNGQWLALRRR
                     FLTLLDAQAQLERMARIIGKDALPARQQLTLLCAELVNEAFLRQSAFSEIDRVCSPAR
                     QGAMMRLLGRFIDLAEAAQSAGVEPERIGALACMRPLQRMGEEVADDQLARLSELEAR
                     MEGEFAHLTATSEARDAAHG"
BASE COUNT          551 a         1314 c         1304 g          556 t
ORIGIN      
        1 ggcgtggtgc tgacaccgca cccgcaggcc cacgcgctgt atgccgacaa gcgccaactc
       61 gcgctgttca gcgatgccgc gcaactgcag tcgctgggcg tgcccgaggc cacgcggcag
      121 gtgctgcttg agcacgtgcc ccgcaccgag gtggtcgatg gcgccgatgc acagcacctg
      181 tgggaggcgc gccgtggcct gttcttcaag ccggtggccg gcttcggcag ccgcgccgcc
      241 taccggggcg acaagctgac gcggcgggtc tggcgggaga tcttggccgg cgactatgtt
      301 gcccaggcca tcgtcgcgcc gggtgagcgg atgctcgacg agcacgaccc ggcgaaggcc
      361 atgaagttcg acctgcgcgc ctacgcctac gacggcgcgg tgcagtgggt ggccgcgcgt
      421 ctgtaccagg ggcagaccac caacttccgc acgccgggcg gaggctttgc gccggtctac
      481 agcacggtcg atgcgtcggg tcgaaccctg caggccggcg ctgacgaggg cgacgtcggc
      541 gctgggcatg cctcctatgt gttcctgctc gacgacgccg gtggcgtgca tgctgtcccg
      601 catgcgctgt acgtcgcgct ggcgcgcgcg caggctgcgg cgccggctct cgccggccgg
      661 accctgcgcc tggccgattg gtacgtgcgc ctgaagaacg ctgcgcccaa cacggtggtc
      721 aacgagacct acagcctggt gcgcttcgac gcgcaggggc ggatcgattg ggccacgacg
      781 ccggccgccc attcccatcg ccacgatgcg gcgaccgtgc ccgacgacgc tggttggccg
      841 accgtgccgg agcgtgagcg catgcgggct ctgcttttcg atgggcccga atcacccgcc
      901 gcgccatcgt cggccgggcc gacggcgtcc gtctgaactc caacctcaca ggagctttcc
      961 atagacatca aggtactcgg caccggctgt gccaactgca agaacatcgt cgcactgatc
     1021 gaacaggtcg ccaaggccaa ggccgtgccc ttacccgacc gccccctggc gcatccagat
     1081 cgcgtcttcc tgttcgagct cctcgagccg gccttcgatg tcgccgatcg agcggtcgag
     1141 ctcgggcagc atcacgtcct gcagggcccg cgcacgacgc accgagcgcc ggtattcgag
     1201 cgacaggcgc tccagatttc ccgacacggc cgccagcccg gccgccccgg ccagcacgcc
     1261 ggcaaacgcc ttccggcagg cttcggcctc gggcgagggc tggacggctt cgggcgccgg
     1321 cgcggcgccg gccacccact cggcctgttg cagtcgcaca cccatcagcg agcgcgccac
     1381 gaagcgcacc tgcgcggcag ccaggtcggc cggcggatag acctccagcc cctccaggcc
     1441 gtggcgcgcc acggcagcct gcagcgcgac cagcgcggtc tcgtgcagca gcaggaactc
     1501 gctttgcagc cgcccgaagc gatccagctc gcgcaggatc tcgccggcca gcaacaggca
     1561 tttctcgtcg agaaagacgt tgccctcgtg catcgcacgg cgctcgtcct tcatctcgat
     1621 gacggcgctg cgggtcggag tcgcgtcgct catgggcgcc cttcgatgtg tgccgcgatc
     1681 tgcgcatccg acaggcgcgt cagctcgctc ttcggcagat cggccagcag ggtccagccg
     1741 atcgccatgc tctgctcgag cgtgcgcggc tcggcctggc tggccaggat ctgctcgaag
     1801 gcggtgccga agctcaggta cttgcggtcg gtatcggcga ggccttcctc gccgaccacg
     1861 ctggcgagca cgcgggcctg cgccgcgcgc gcgtaggccg aatacaactg gctggccagg
     1921 gccgggtggt cggggtcggt gtacttgccg ccggtgccgt ccttcatcag ccgcgacagg
     1981 ctcgggagca cgttcaccgg cgggtagata ccgcgccggt cgagatcgcg cgacaagacg
     2041 atctggccct cggtgatgta gccggtcaga tccgggatcg ggtggccgat gtcgtcggcc
     2101 ggcatcgtca ggatcgacag ttgcgtcagc gtgccgtgcg tgccgcgcag gcagccggcg
     2161 cgttcgaaca gcgtggccag gtccgagtac atgtagccgg gaaatccctt gcggctcggg
     2221 atctcgccct tgctcgaaga cacctcgcgc agcgcttcgc aatagttcgt catgtcggtc
     2281 aggatcgcca gcacatgctt gccctcgacg aaggccaggt actcggccgc gctgagggcg
     2341 aagcgcggcg tcagcaggcg ctgcgtgctc gagtcgctgg ccaggttgag gaacagcgcc
     2401 gtgcgctcga gcgcgccgcc ctgctcgagg ctgcggcgga agtactcggc gctgtcgtag
     2461 ggcacgccga tgccggcgaa gacgatcacg aagtccgcgc cgccctggcg caggcgcgcg
     2521 tggctggcga tctcgaccgc gagccggtcg tgcggcaacc cgccgccgga aaaaagcggc
     2581 agcttctggc cgcgcacgag gctgttcatc aggtcgagcg tgctaatgcc ggtctcgatg
     2641 aagtcgcgcg gcagcgcgcg cgccaccggg ttcatcggca ggccgtcgat cggcaccttg
     2701 cgatgcgcgg ccaccggcgg cccgccgtcg atgacctggc ccacgccgtt gaagacgcgc
     2761 ccgagaatgc ccggcccgac cccgaatgtc atgggctcgc cgtagaagcg caccaccgag
     2821 ccttcgaggg acagtccggc ggtcgactcg agcacctcga tcgtcatgaa ctggtcgtcg
     2881 atcgccgcga tgcgcccgag cctcgcgcgg ccgtcgctgc cgcgcacctc gaccgcgtcg
     2941 tacaggccga cgtcgagggt gcggcgcagg aacagcagcg gaccctcgag ccgcgtggcg
     3001 gcgccttcaa ccgtgagcag catcgcgggc ttccgaagtc gctgtgaggt gcgcgaactc
     3061 gccttccatg cgggcctcga gttcgctcag gcgcgccagc tggtcgtcgg cgacctcctc
     3121 gcccatgcgc tgcagcggtc gcatgcaggc cagcgcgccg attcgctcgg gctcgacccc
     3181 ggccgactgg gcggcttccg ccaggtcgat gaagcggccg agcaaccgca tcatggcgcc
     3241 ctggcgcgcc gggctgcaga cgcggtcgat ctcggagaac gccgactggc gcaggaaggc
     3301 ttcgttgacg agctcggcgc acagaagcgt gagctgctgg cgcgcgggca gggcgtcctt
     3361 gccgatgatg cgcgccatgc gctcgagttg cgcctgcgca tcgagcagcg tgaggaagcg
     3421 ccggcgcagc gcgagccact ggccattgcc ctgcgccgcc caccacggcg cgaactcgcg
     3481 cgcgtcctcg gcgtacgact gcagcgggtg gatcgcgggg tagaagcgcg cctgcgcgcg
     3541 cttgacgtcg agggcccaga acgccttcac gtagcgcttg gtgtggctcg tcaccggctc
     3601 ggaaaagtca ccggacggcg ggctgatcgc gcccatcacg gtcaccgagc cggtggtgcc
     3661 gcccaacgtc tcgacgagcg ccgcccgttc atagaagtcg gccaggcggc ttgacaggta
     3721 ggccg
//
LOCUS       DASVHM010000777         1814 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1357579, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000777 DASVHM010000000
VERSION     DASVHM010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1357579"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1281)
                     /gene="purF"
                     /locus_tag="VF308_14270"
     CDS             complement(<1..1281)
                     /gene="purF"
                     /locus_tag="VF308_14270"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005795992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEX7437870.1"
                     /translation="MCGIVGVIAKSPVNQLIYDALLLLQHRGQDAAGIVTMQGTKCFM
                     QKARGMVRDVFRTRNMRALPGNVGLGQVRYPTAGNAYSEEEAQPFYVNAPYGIVLVHN
                     GNLTNAATLKQELFDIDRRHINTGSDTEVLINVLAHELERAARDRQLSPEEVFAAVGA
                     VHKRIRGSYAVVALIAGHGLLAFRDPFGIRPLAFGEGVGPGGPEVMVASESVAIVGTG
                     HTLTRDVAPGEAIFIDLEGTVHARQCAEHPSLNPCMFEYVYLARPDSVMDGVSVYQAR
                     LNLGETLAQRVISTLPPSEIDVVIPIPESSRPSAMQLAQRIGKPYREGFVKNRYVGRT
                     FIMPGQGVRKKSVRQKLNAIEVEFKGRNVLLVDDSIVRGTTSKEIVQMARDAGAKKVY
                     LASAAPPVRFPNVYGIDMPTKDELIAHGRTIEEIR"
     gene            complement(1318..>1814)
                     /locus_tag="VF308_14275"
     CDS             complement(1318..>1814)
                     /locus_tag="VF308_14275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEX7437871.1"
                     /translation="LGWVDLAMLGVIALSAIVGAARGLTFEVLSLLGWVAAWFAGLWL
                     GPLLAPHLPIGAPGSPLNGIAAFASAFLIILVVWGLGARAISALVGKTLLRPLDRLLG
                     AVFGLARGVLVLLALVTVVSFTPATTSEAWRESQGAAWLNSILRELMPFISPGKTEPG
                     ARSV"
BASE COUNT          300 a          622 c          625 g          267 t
ORIGIN      
        1 gcggatctcc tcgatcgtgc ggccgtgggc gatcagctcg tccttggtcg gcatgtcgat
       61 gccgtagacg ttcgggaagc gcaccggcgg cgccgccgag gcgaggtaga ccttcttcgc
      121 gccggcgtcg cgcgccatct ggacgatctc cttcgaggtc gttccgcgca cgatcgaatc
      181 gtcgacgagg aggacgttcc ggcccttgaa ctcgacctcg atcgcgttca gcttctggcg
      241 caccgacttc ttgcgaacgc cctgccccgg catgatgaag gtgcggccga cgtagcggtt
      301 cttgacgaag ccctcgcggt agggcttccc gatccgctgc gcgagctgca tcgccgacgg
      361 ccggctcgac tcggggatcg ggatgacgac gtcgatctcc gacggcggca gcgtcgagat
      421 gacgcgctgg gcgagcgtct cgccgaggtt caggcgcgcc tggtagaccg agacgccgtc
      481 catcaccgaa tcgggccgcg ccaggtaaac gtattcgaac atgcacgggt tcagcgacgg
      541 gtgctccgcg cactgccgcg cgtgcaccgt gccctcgagg tcgatgaaga tcgcctcgcc
      601 gggggcgacg tcgcgcgtca acgtgtggcc ggtgccgacg atcgccaccg actcgctcgc
      661 gaccatcacc tcgggcccac ccgggccgac gccttcgccg aaggctagcg gccggatgcc
      721 gaacggatcg cggaacgcga gcaggccgtg gccggcgatc agcgcgacca ccgcatacga
      781 gccgcggatc cgcttgtgca ctgcgccgac cgcggcgaac acctcctcgg gcgagagctg
      841 gcggtcgcgc gccgcgcgct cgagctcgtg agcgaggacg ttgatcagca cctcggtgtc
      901 gctgccggtg ttgatgtggc gccggtcgat gtcgaacagc tcctgcttga gcgtcgccgc
      961 gttggtgagg ttgccgttgt ggacgaggac gatgccgtac ggtgcgttga cgtagaaggg
     1021 ctgcgcctct tcctcgctgt aggcgttgcc tgcggtcgga tagcgcacct ggccgaggcc
     1081 gacgttgccc ggcagggcgc gcatgttgcg ggtgcgaaag acatcgcgaa ccatgccgcg
     1141 ggccttctgc atgaagcact tcgttccctg catcgtgacg atgccggcag catcctggcc
     1201 gcggtgctgg agcagcagca gggcgtcgta gatcagctgg ttgaccggcg atttcgcgat
     1261 cactccgacg attccacaca tggcagctcc tcgacagtca atccacgcgc gacgcgctca
     1321 cacgctgcgc gcgccgggct cggtcttccc gggcgagatg aacggcatca gctcgcgcag
     1381 gatcgaattc aaccaggccg cgccctgcga ttcgcgccac gcctccgacg tcgtcgccgg
     1441 cgtgaacgag acgaccgtca ccaaggcgag caggacgagc acgccgcgcg ccaggccgaa
     1501 caccgcgccg agtaggcggt cgagcggccg cagcagcgtc ttgccgacca gcgccgagat
     1561 cgcgcgcgcc cccaggcccc acacgacgag gatgatcagg aacgcagatg cgaacgcggc
     1621 gatgccgttc aagggagacc ccggtgcgcc gatgggcaag tgcggcgcaa gcaacggtcc
     1681 gagccacagg ccggcgaacc aggccgcgac ccagccgagc agcgacagca cctcgaaggt
     1741 gaggccgcgc gccgcaccga cgatcgccga caaggcgatc acgccgagca tcgcgagatc
     1801 gacccagccg agct
//
LOCUS       DASVHM010000778         9764 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1284235, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000778 DASVHM010000000
VERSION     DASVHM010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 9764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9764
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1284235"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..2013
                     /locus_tag="VF308_14280"
     CDS             106..2013
                     /locus_tag="VF308_14280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019447234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HEX7437872.1"
                     /translation="MAHVHLLDRVIGDEWPVFATDAQVRAFEATPYAGRIAAPSTYEA
                     LRLGAAHDPEAPAMLFLANAEPDETPLRISHRQFFGRVTKTANLLGALGVGPHDVVSL
                     LLPLLPQSFFTLFGAEAVGIANPVNPLLEAGQIAEILRAAGTKVLVTLGPTPGTDIWS
                     KVERIRAQLPALEAIVVVNGAGDPAHAIHSFDALADLQPADRLVGARQIAPDDPAAFF
                     HTGGTTGMPKLVRHSHANEVYQAWAVNLMLHSHPGASLLFGLPLFHVGGALTQGLAPL
                     SAGGTLVVLSPAGWRNPNAIRNVWRLVERYRPEVFGGVPTVLAAALNVPVGDADLTSI
                     LFCSGGGSAIPVPIGKIYEERLHVPVLEVYGMTETSSVHTIAYLDRPVRLGSVGHPVP
                     YSRVRIVQLDADGHSQRDCAVDEIGVVAMHGPGVFSGYLSEVHNRGAFVEPGWVNSGD
                     LGRLDADGYLWITGRAKDLIIRGGHNIDPMAIEEVFFQHPAVALASVVSEPDAYAGEL
                     PVAFVQLKAGVQIEAAELLAFVAERTPERAALPVQLYFIEAVPLTAVGKVFKPALRWD
                     AAQRAVTRMLADLQQPGLGLSVEVGPHPEHGSLITVAIQGEGTAARAALEQEVHARLN
                     PLVLRHAIVWR"
     gene            complement(2023..2667)
                     /locus_tag="VF308_14285"
     CDS             complement(2023..2667)
                     /locus_tag="VF308_14285"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEX7437873.1"
                     /translation="MPTPLPPADDQLPKALLDAIAQRGGVRHFPAHAILINEGDSTDS
                     LYIVLSGRLRVYASAENGREVVLAEHGPGEYLGELSLDGAKRSVSVKALEPCSCCVVQ
                     GPQLRQFLVEHPDFALHLTEKLIRMVRRLTEQVKSLALQDVYGRIARVLTELSDASGE
                     ERVVRLKLTQQDIAARVGSSREMVNRVMKELTAGGYVSLRDGRHVIHRKLPAAW"
     gene            2963..4609
                     /locus_tag="VF308_14290"
     CDS             2963..4609
                     /locus_tag="VF308_14290"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HEX7437874.1"
                     /translation="MTARATFAFLQRLCGSVLSGGFAHMNAALAGPTLSVLLALALGG
                     CASLPAGVHRPLSEARTDVAATRLAAIAAASTPDDARELSGFRLLPVGDQAFDARIAL
                     ARRADKTLDVQYYLIAHDASGLQFLRELRDAAERGVRVRVLVDDLYAAGQDALLAGLA
                     AHANVEVRLFNPLPVRGGSFGARVVLSMHEFSRINRRMHNKLFVADNVFAVSGGRNIA
                     DEYFGRSEPANFIDMDVLSSGPVVRELSAVFDRYWNSEHAYPVQSLVGAGFDAALARR
                     RFDEKVSEVPAAGAPAAVDSLGRSGVGAQLAGGFVEQHFASARVLADAPNKVDDDASR
                     KARADDTVANDTLDLIGLADSEVLVASPYFVPGERGLDVMRQALARNVRVSVMTNSLS
                     TTDEPLVHFGYARHRGELLKMGVSLYELMPTAGAKAVESTLEFHGSLGRLHAKLAVVD
                     SRWLFIGSMNMDRRSARWNTESGLIIDSPELADEVASLLRRERLPGSYRLRMAGDEKR
                     IEWVAGAGRSEVVRTSEPDAKPGQQLRLWITSRFVSEEML"
     gene            complement(4617..5633)
                     /locus_tag="VF308_14295"
     CDS             complement(4617..5633)
                     /locus_tag="VF308_14295"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003953 - NAD+ nucleosidase activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HEX7437875.1"
                     /translation="MSARIFISYRTSDGRDKATALARDLGARFGDDQVFLDKDDLRGG
                     SSWRDEVQRTLGGRPVLLLLMTPQLLAATDSAGTLRIADPNDPVRREFGAALEAGAHI
                     LPILCDGVDAPPADGLPAPFNRLGDFTWRKLRAYDWKNDLARLVDDLQALGVQALGAT
                     PAARPRSVRRAALLALGLAGMAIGAVFGWRAWGPAAAPIATPVPVATIGLAGTWVATV
                     DADPPFALTLLQQDNRLALTSEPVPVDNRAGWAAYRTFWLRLTGTELRSIVYRGQGTV
                     ITDPGQPLTIDIAWKIFNGDGDTMIDSGNLHASAALEGRSLDGKLWSNGDQAERGVVL
                     RRPR"
     gene            complement(5665..6828)
                     /locus_tag="VF308_14300"
     CDS             complement(5665..6828)
                     /locus_tag="VF308_14300"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7437876.1"
                     /translation="MLPAFLVLAVCAFASGFALRIIDPLVLPIAHHFAVTPATAALLS
                     TAYALPYAIAQPFLGPLGDRFGKPRCIQICVAGLAAALIAGTLAPTFQLLMTTRIVAG
                     VFAGGLIPLVLAGLGDAYDMQERQVMIGRMLFAIITGQMLGSTVAGFANVAFGWRSAL
                     LIAAVAALLATALAWLAMPRTHRAAALPGSVPTSFGALYGHVFDNPKAVWLYAAVAAE
                     GALVFGLFPYVGQLLIGRAGSSVEAAPGQAGLVLGAFGIGGLAYALCVRSIIALLGIK
                     RMCIVGSIAAAATYAALAVFQVWWLDALAMMLAGLSYYMLHNCLQTEATEIAPSARGS
                     AVALFACSFFAGQGLGPLLFGALVHAFGFPAALLTSVLGLVVLGQFVVRRIVA"
     gene            complement(6843..7685)
                     /locus_tag="VF308_14305"
     CDS             complement(6843..7685)
                     /locus_tag="VF308_14305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7437877.1"
                     /translation="MAGWLSAVLVMTIAGREATRELHVFQIMEMRSIIGLFMLYPLVR
                     ASGGYAAMKTLRLGQHVARNAVHYGAQFSWFLALTLIPLAQVVAIEFTMPIWTAVLAV
                     AFLGERMNAWKVGAIVLGFVGVAIIVRPTAGSIETGQLIALAAAVAFSVSLILVKSLT
                     RTESVVSIIFWMLVVQSSIGLVPALWTWRTPSAQVWPWILVIALCGTFSHYCLARAMR
                     HADATIVVPMDFLRVPLTATAGWLFYAERVDLFTVLGAALILAGNLLNLKAARPAPAR
                     ARAR"
     gene            complement(7743..8513)
                     /gene="xth"
                     /locus_tag="VF308_14310"
     CDS             complement(7743..8513)
                     /gene="xth"
                     /locus_tag="VF308_14310"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008311 - double-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEX7437878.1"
                     /translation="MKIATYNVNGINGRLPRLLEWLEEAKPDVVCLQELKTSDATFPE
                     AAIRAAGYGTIWSGQKSFNGVAILARGADPVETRRGLPGDPSDIHSRYLEAAVEGIVI
                     ASIYLPNGNPQPGPKFDYKLAWFERLDNYAAALLKSGAPVVLAGDYNVVPTDADIYSP
                     ASWKDDALLQPESRAAYQRLLAQGWTDAIRARHPDAKIYTFWDYMRNHWARDAGLRID
                     HLLLSPSVAERLVDAGVDREVRGRDKASDHAPAWVVLR"
     gene            complement(8648..9469)
                     /gene="xdhC"
                     /locus_tag="VF308_14315"
     CDS             complement(8648..9469)
                     /gene="xdhC"
                     /locus_tag="VF308_14315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0009115 - xanthine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase accessory protein XdhC"
                     /protein_id="HEX7437879.1"
                     /translation="MHDLRALAAAWLAEGRCAVVVEVMEARGSAPRTAGTRMLVATDC
                     AAGTIGGGHLELKAIDEARAMLQTNEPGPRSRHYPLGPALGQCCGGAVTLSLARLDAA
                     ALAAWPQTPPRFHLQLYGAGHVGRAIARALSPLNVRVDWIDEREEEFPARFFETGDAP
                     WPGHIRKVCVDAVEAEVGEAPPGAYYLVLTHQHDIDLRITERILRRADFGFLGLIGSK
                     TKRQRFIHRFEALGIASTHIARMTCPIGLPGIEGKEPEVIAAAVVAQLLLASSAG"
     gene            complement(9508..>9764)
                     /locus_tag="VF308_14320"
     CDS             complement(9508..>9764)
                     /locus_tag="VF308_14320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="xanthine dehydrogenase molybdopterin binding
                     subunit"
                     /protein_id="HEX7437880.1"
                     /translation="TYKIPTANDCPPVFNVRLFEGASVADTIHRSKAAGEPPLLLAFS
                     VFYAIRDAISAAGGHRVDPPLTAPATSEAILRALSAVQAR"
BASE COUNT         1500 a         3357 c         3454 g         1453 t
ORIGIN      
        1 atgccgccct tcatgggcca cgtgaccgcc tcgcatccga ccaaggtgct gcgtccgggc
       61 tatgtcaacg cggtcgcggc gggattcaag aactaggaaa cgacgatggc acacgtgcat
      121 ctgctcgacc gcgtgatcgg cgacgaatgg ccggtcttcg cgaccgatgc gcaggtgcgc
      181 gcgttcgagg ccacgccgta cgccgggcgc atcgccgcgc ccagcaccta cgaggccttg
      241 cgcctcggtg cggcgcatga ccccgaggcg ccggccatgc tctttctcgc caatgccgag
      301 cccgacgaaa cgccgctgcg catctcgcac cggcagttct tcggccgcgt cacgaagacc
      361 gcgaacctgc tcggcgccct cggcgtcggc ccgcacgacg tggtgagtct tctgttgccg
      421 ctgctgccgc agagcttttt cacgctgttc ggcgccgagg cggtcggcat cgccaacccg
      481 gtgaatccgc tcctcgaggc cggccagatc gccgagatcc tgcgcgccgc gggcacgaag
      541 gttctcgtca cgctgggccc gacgccgggc accgacatct ggagcaaggt cgagcgcatt
      601 cgcgcccagt tgccggcgct cgaagccatc gtcgtggtga atggcgcagg cgatccagcc
      661 cacgccatcc acagcttcga cgcgctcgcc gacctgcaac ccgccgatcg cctggtcggc
      721 gcacggcaga tcgcgcccga cgacccggcc gccttcttcc acaccggcgg caccacgggc
      781 atgccgaagc tggtgcgcca cagccacgcc aacgaggtct accaggcctg ggccgtgaac
      841 ctgatgctgc attcccaccc gggggcgtcc ctgttgttcg ggctgccgct gtttcatgtg
      901 ggcggcgcgc tgacgcaggg cttagcaccc ttgagcgcgg gcggcacgct cgtcgtgctg
      961 tcgccggcgg ggtggcgcaa cccgaatgcg atccgcaacg tctggcgcct cgtcgagcgc
     1021 taccgccccg aagtgttcgg cggcgtgccg accgtgctcg ccgccgcgct gaacgtgccg
     1081 gtcggcgacg ccgacctgac gagcatcctc ttttgctcgg gcggcggttc ggcgataccg
     1141 gttccgatcg gcaagatcta cgaagagcgg ctgcacgttc cggtgctcga ggtctacggc
     1201 atgaccgaga cctccagcgt gcacaccatc gcctacctcg accgtccggt gcggctgggc
     1261 tcggtcggcc atccggtgcc atacagccgc gtgcgcatcg tccagctcga cgccgacggg
     1321 cactcacagc gcgactgcgc ggtggacgag atcggcgtcg tcgcgatgca cgggcccggc
     1381 gtgttctcgg gttacctgag cgaggtgcac aaccgcggcg ccttcgtcga gcccggctgg
     1441 gtcaactcgg gcgacctggg ccggctcgac gccgacggct acctctggat caccgggcgc
     1501 gccaaagacc tgatcatccg cggcggccac aacatcgacc cgatggcgat cgaggaggtc
     1561 ttcttccagc atccggccgt ggcgctcgct tcggttgtca gcgaacccga tgcgtacgcg
     1621 ggcgaattgc cggtggcctt cgtgcagctc aaagccggcg tgcagatcga agccgccgag
     1681 cttctcgcct tcgtcgccga acgcacgccg gagcgcgcag ccctcccggt gcagctctac
     1741 ttcatcgagg ccgtgccgct gacggccgtc ggcaaggtct tcaagcccgc gctgcgctgg
     1801 gacgcggcgc agcgcgcggt gacgcggatg ctcgcggatc tgcagcaacc cgggctcggc
     1861 ctgtcggtcg aagtcgggcc gcaccccgag cacggcagcc tgatcacggt ggccatccag
     1921 ggcgagggca cagccgcgcg cgcggcgctg gagcaagagg tgcacgcgcg cctgaatccg
     1981 ctcgtgctgc gccacgccat cgtctggcgc tgaggcgtcg cgctaccagg ccgccggaag
     2041 cttgcggtgg atcacgtggc ggccgtcgcg cagcgacacg tagccgccgg cggtcagctc
     2101 cttcatcacc cggttgacca tctcgcgcga cgaaccgacg cgcgcggcga tgtcctgctg
     2161 ggtcagcttc aggcgcacca cgcgttcctc gccggacgcg tcggatagct ccgtcagcac
     2221 ccgcgcgatg cgcccgtaga cgtcctgcag cgcgaggctc ttcacctgct cggtgaggcg
     2281 tcgcaccatg cggatcagct tttccgtgag gtgcagcgcg aagtcggggt gttcgacgag
     2341 gaactggcgt agctgcgggc cttgcaccac gcagcagctg cacggctcca gggctttgac
     2401 cgagactgag cgcttcgcgc cgtcgagcga aagctcgccg aggtactcgc ccggcccgtg
     2461 ctcggcgagc accacttcgc ggccgttttc ggcgctcgca tagacccgca gtcgtccgct
     2521 cagcacgatg tagagcgaat cggtgctgtc gccctcgttg atcaggatcg cgtgcgccgg
     2581 aaagtggcgc accccgccgc gctgcgcgat cgcgtcgagg agcgctttcg ggagctggtc
     2641 gtcggcaggc ggcagcggcg tcggcatgaa ctcaattatc cgggtgctgc ggtactgtga
     2701 ggcggcgctg tgaatatgtc actcgtcgcc ggcgaattgg tcactcgtcg gggaaggctc
     2761 ttctgcctag attccatcta cgcgaaacga gattggatct cgccgtcgcg aggaccccga
     2821 ggagccgacc atgaagacca ccgaattcct gcgcatctgc atcgccgtcg tcaccgtcgc
     2881 cgtcggcatg accgcgtatt cgctcctggt cgcgttgcag gccgcggcga tctgaacgtt
     2941 ccggccgaac ctggagactg ccgtgaccgc gcgcgcgacc ttcgccttcc tgcagcgcct
     3001 ctgcggctcg gtgctgtcgg gtgggttcgc gcacatgaac gcggcgctgg cggggccgac
     3061 cctttccgtg ttgctggcgc tggccctcgg cggctgtgcc agcctgccgg ccggcgtgca
     3121 ccggccgctg tccgaggctc gcaccgatgt ggccgcgacc cgccttgccg cgatcgcggc
     3181 ggcctcgacg cccgacgatg cccgcgaact gtcgggcttt cggctcctcc cggtcggcga
     3241 ccaggcgttc gatgcgcgca tcgcgctggc ccgccgggcc gacaagacgc tcgacgtgca
     3301 gtactacctc atcgcccacg acgcctcggg cctgcagttc ctgcgcgagc tgcgcgacgc
     3361 cgccgagcgc ggcgtgcggg tgcgcgtgct ggtcgacgat ctctatgccg ccggtcagga
     3421 tgcactgctc gccggcctgg ccgcccatgc caacgtcgag gtgcgcctct tcaacccgtt
     3481 accggtgcgc ggcggcagct tcggcgcccg ggtcgtgctg tcgatgcacg agttttcgcg
     3541 catcaaccgg cgcatgcaca acaagctctt cgtcgccgac aacgtcttcg ccgtgagcgg
     3601 cggccgcaac atcgccgacg aatacttcgg ccgcagcgag ccggccaatt tcatcgacat
     3661 ggacgtactc tcgtcgggcc cggtcgtgcg cgaactctcc gcggtgttcg accgctactg
     3721 gaacagcgag catgcctacc cggtgcaaag cctggtcggt gccggtttcg atgccgcgct
     3781 ggcgcgccgg cgcttcgacg agaaggtcag cgaggtcccg gccgctggcg cgcccgccgc
     3841 agtcgattcg ctcggtcgca gcggcgtcgg ggcgcagctc gcgggcggct tcgtcgagca
     3901 gcatttcgcg agcgcgcggg tgctggccga tgcgccgaac aaggtcgacg acgacgcgag
     3961 tcgcaaggcc cgcgccgacg acacggtcgc gaacgacacc ctcgacctga tcggcctggc
     4021 cgactccgag gtgctcgtgg cctcgcccta tttcgtgccc ggcgagcgcg gactcgacgt
     4081 gatgcggcag gccctggccc gcaacgtgcg cgtctcggtg atgacgaatt cgctctcgac
     4141 caccgacgaa ccgctggtcc atttcggcta cgctcgccac cgtggcgaat tgctgaagat
     4201 gggcgtgagc ctgtacgagc tgatgccgac cgccggcgcc aaggcggtcg agtcgacgct
     4261 cgagtttcac ggctcgctcg gccgcctcca cgccaagctc gccgtcgtcg acagccgctg
     4321 gctcttcatc ggctcgatga acatggaccg ccgctcggcg cgctggaaca ccgagagcgg
     4381 cctgatcatc gacagccccg agctggccga cgaagtggcg agcctgctgc gccgcgaacg
     4441 cctgccaggc agctaccggc tgcggatggc cggcgacgag aaacgcatcg agtgggtggc
     4501 gggcgccggc cgaagcgaag tcgtgcgcac gtcggagccg gatgcgaagc ccggccagca
     4561 gctgcggctg tggatcacgt cgaggttcgt gagcgaggaa atgctgtgag caggtcttag
     4621 cgcggccgcc gcagcaccac cccgcgctcg gcctggtcgc cgttcgacca gagcttgcca
     4681 tcgaggctgc ggccttcgag cgcggcgctc gcgtgcagat tgccgctgtc gatcatcgtg
     4741 tcgccgtcgc cgttgaagat cttccaggcg atgtcgatcg tcagcggctg gcccggatcg
     4801 gtgatgacgg tgccctggcc gcggtagacg atgctgcgca gttcggtgcc ggtcaggcgc
     4861 agccagaacg tgcgataggc ggcccagccg gcgcggttgt cgaccggaac cggctcgctg
     4921 gtcagcgcga ggcggttgtc ctgctgcagc agcgtcagcg cgaagggcgg gtcggcgtcg
     4981 accgtggcga cccacgtccc cgccaagccg atcgtcgcga cgggcaccgg cgtcgcgatc
     5041 ggcgcggcgg cgggacccca ggcgcgccag ccgaacaccg cgccgatggc catgcccgcc
     5101 aggccgagcg cgagcagcgc cgcgcgccgc accgatcgcg ggcgggccgc cggcgtggcg
     5161 ccgagcgctt gaacgccgag cgcctgcaga tcgtcgacga ggcgggcgag gtcgttcttc
     5221 cagtcgtagg cgcgcagctt gcgccaggtg aagtcgccga gccggttgaa cggcgccggc
     5281 aggccgtccg ccggcggcgc atcgacgccg tcgcacagga tcggaaggat gtgcgcgccg
     5341 gcctcgagcg cggcgccgaa ctcgcgccgc accgggtcgt tcggatcggc gatgcgcaag
     5401 gtgccggccg aatcggtcgc cgccagcaat tgcggcgtca tcaagagcag cagcaccggc
     5461 ctgcctccaa gggtgcgctg gacttcgtcg cgccacgacg agccgccgcg caggtcgtcc
     5521 ttgtcgagaa acacctggtc gtcgccgaag cgcgcgccga ggtcgcgcgc caatgcggtg
     5581 gccttgtccc tgccgtcgga cgtgcggtag ctgatgaaga tgcgggcgct catggcgtgc
     5641 tcccgaagcg tacttcaagg acgatcaggc gacgatccgg cgcaccacga actggccgag
     5701 cacgaccagc ccgaggaccg atgtcaagag cgccgcggga aagccgaagg cgtggacgag
     5761 cgcaccgaag agcagcgggc cgaggccctg gcccgcgaag aagctgcagg cgaagagcgc
     5821 caccgccgag ccgcgcgccg agggcgcgat ctcggtcgct tcggtctgca ggcagttgtg
     5881 cagcatgtag tagctcaggc cggccagcat catcgccagc gcatcgagcc accagacttg
     5941 gaagacggcg agcgccgcat aagtcgcggc cgccgcgatg gacccgacga tgcacatgcg
     6001 cttgatcccg agcagcgcga tgatgctgcg cacgcacagc gcataggcga ggccgccgat
     6061 gccgaacgcg ccgagaacga ggccggcctg gccgggtgcg gcctcgacgc tgctgccggc
     6121 gcgcccgatc aggagctgcc cgacgtaggg aaatagaccg aagacgagtg cgccctcggc
     6181 cgccaccgcc gcatagagcc agaccgcctt cgggttgtcg aagacatgcc cgtagagcgc
     6241 gccgaacgag gtgggcacgc tgccgggaag ggcggccgct cggtgcgttc gcggcatcgc
     6301 cagccaggcg agggcggtcg ccagcagcgc ggccacggct gcgatcaaca gcgcgctgcg
     6361 ccagccgaac gccacattgg cgaagccggc cacggtcgaa ccgagcatct gcccggtgat
     6421 gatggcgaag agcatgcgtc caatcatcac ctggcgctcc tgcatgtcgt aggcgtcgcc
     6481 caggcccgcg agcacgagcg ggatcaggcc gccggcgaac acgccggcga cgatgcgtgt
     6541 cgtcatcagc aattggaaag tcggcgccag ggtccccgcg atcagtgccg ccgcgaggcc
     6601 ggcgacgcag atctggatgc agcgtggctt gccgaagcgg tcgccgagcg ggcccaaaaa
     6661 gggctgcgcg attgcatacg gcagcgcgta ggcggtgctc agcagcgccg ctgtcgccgg
     6721 ggtcaccgcg aagtgatggg cgatcggaag aaccagcgga tcgatgatgc gcagcgcgaa
     6781 gccgctcgcg aacgcgcaca cggcgaggac gaggaaagcc ggcaacatcg gtcagggccg
     6841 gctcatcggg ctcgggcgcg cgccggcgcg ggacgggcgg ccttcaggtt gagcaggttg
     6901 ccggcgagga tcagcgccgc gccgaggacc gtgaagaggt cgacgcgctc ggcgtagaag
     6961 agccagccgg cagtggccgt caacgggacg cgcaggaaat ccatcggcac gacgatggtc
     7021 gcatcggcat ggcgcatcgc ccgcgccagg cagtaatgcg agaacgtgcc gcagagggcg
     7081 atcacgagga tccacggcca gacctgcgcg ctcggcgtgc gccaggtcca cagcgcgggc
     7141 acgaggccga tcgaggactg cacgacgagc atccagaaga tgatcgagac gacgctttcg
     7201 gtgcgggtca gtgacttcac caggatcagc gaaacgctga aggcgaccgc ggcggccagc
     7261 gcgatcaact ggccggtctc gatcgagccc gccgtcggcc gcacgatgat cgcgacgccg
     7321 acgaagccga gcacgatcgc gccgaccttc caggcgttca tgcgttcgcc gagaaaggcg
     7381 acggcgagca ccgcggtcca gatcggcatc gtgaattcga tcgccaccac ctgggccagg
     7441 gggatcagcg tgagggcgag gaaccaggag aactgggcgc cgtagtggac cgcgttgcgg
     7501 gcgacgtgct ggcccaggcg caaggtcttc atcgcggcgt agcccccgct cgcgcgaacc
     7561 agcgggtaga gcatgaagag gccgatgatc gagcgcatct ccatgatctg gaacacgtgc
     7621 aactcgcggg tcgcctcgcg gcccgcgatg gtcatgacca gcaccgccga gagccatccg
     7681 gccatccagc ccgcggcttt ggcggtcgaa ggccggggcc cggccgtcgc gaaggccgtc
     7741 attcagcgca gcacgaccca tgccggcgca tggtcgctcg ccttgtcgcg gccgcgcacc
     7801 tcgcgatcga caccggcgtc gaccagccgt tcggcgacgc tcgggctgag cagcagatgg
     7861 tcgatgcgca gcccggcgtc gcgggcccag tggttgcgca tgtagtccca gaacgtgtag
     7921 atcttcgcat ccggatggcg ggcgcggatc gcgtcggtcc agccctgggc gaggaggcgc
     7981 tggtaggccg cgcggctttc cggctgcagc agcgcatcgt ccttccacga ggcgggcgaa
     8041 tagatgtcgg catcggtcgg caccacgttg tagtcgcctg ccagcaccac cggcgctccc
     8101 gacttcagga gcgccgcggc gtagttgtcg aggcgctcga accaggccag cttgtagtcg
     8161 aacttcgggc cgggctgcgg gttgccgttg ggcaggtaga tcgaggcgat gacgatgccc
     8221 tcgacggccg cttcgaggta gcggctgtgg atgtcgctcg ggtcgccggg caggccgcgc
     8281 cgggtctcga ccgggtcggc cccccgggcg aggatggcca cgccgttgaa cgatttctgt
     8341 ccgctccaga tggtcccgta gcccgccgcc cggatggcgg cctcggggaa tgtcgcgtcg
     8401 gaggtcttca actcctgcag gcagaccaca tcgggcttgg cctcttccag ccactcgagc
     8461 aggcgcggca gccggccgtt gatgccgttg acgttgtaag tcgcgatctt catgcgtcgg
     8521 gtcgatccgg agtgcgggcc attttgccct tcggtcatcg caccagctcg catcggcctg
     8581 gtggatgcga caacgtgcag cgatgcggtc gcgtttcagc cgcgctgagg cgcgaggccg
     8641 ctatgtctca acccgcgctg gaagcgagca gcaattgcgc caccaccgca gcggcgatca
     8701 cttcgggctc cttgccctcg atgcccggca ggccgatcgg gcaggtcatc cttgcgatgt
     8761 gcgtggaggc gatgccgagt gcctcgaagc ggtggataaa gcgctggcgc ttcgtcttcg
     8821 aaccgatcag gccgaggaag ccgaagtcgg cgcggcgcag gatcctttcg gtgatgcgca
     8881 ggtcaatatc gtgctggtgc gtcagcacga ggtagtacgc accgggcggc gcctcgccga
     8941 cctcggcctc gaccgcatcg acgcagacct tgcggatgtg cccgggccag ggcgcgtcgc
     9001 cggtttcgaa gaagcgcgcc ggaaactctt cctcgcgttc gtcgatccag tcaacgcgca
     9061 cgttcagtgg tgagagagcg cgcgcgatcg cgcgtccgac gtggccggcg ccgtagagct
     9121 gcagatggaa gcgcggcggt gtctgcggcc aggcggcgag tgcggccgca tcgaggcgcg
     9181 ccaggctcag cgtcacggcg ccgccgcagc actggccgag ggccgggccg agcggatagt
     9241 ggcgtgagcg cggccccggc tcgttggtct gcagcatggc gcgcgcctcg tcgatcgcct
     9301 tcagttcgag atggccgccg ccgatcgtgc cggcggcgca atcggtggcg acgagcatcc
     9361 gggtgccggc cgtgcgcggc gccgaaccgc gcgcctccat cacctcgacg acgaccgcgc
     9421 accggccttc tgcaagccag gcggcggcca gcgcgcgcag gtcgtgcatg cgtcggaact
     9481 ccgaggctgg gtcgcctgcg cgaccgctca acgcgcctgc acggcgctga gcgcgcgcag
     9541 gatggcttcg ctcgtcgccg gggccgtcag tggcggatcg acgcgatggc cgccggccgc
     9601 ggaaatcgcg tcgcggatcg cgtagaacac cgagaacgcc aacagcagcg gcggctcgcc
     9661 ggcggccttg ctgcggtgga tcgtgtcggc cacgctggcg ccttcgaaga ggcgcacgtt
     9721 gaagaccggc gggcagtcgt tggcggtcgg gatcttgtag gtgc
//
LOCUS       DASVHM010000779         2644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_560971, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000779 DASVHM010000000
VERSION     DASVHM010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2644
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_560971"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(16..489)
                     /locus_tag="VF308_14325"
                     /pseudo
     CDS             complement(16..489)
                     /locus_tag="VF308_14325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006164762.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAF domain-containing protein"
     gene            complement(524..1387)
                     /locus_tag="VF308_14330"
     CDS             complement(524..1387)
                     /locus_tag="VF308_14330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013396150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEX7437881.1"
                     /translation="MKLMRYGPKGAEKPALVDDNGRVHDLSAVLPDIGAETLQPQMLD
                     RLRRLDLATLPLVPNPGRTAPPWRGMGKFICIGLNYSDHAAETGAAIPKEPIIFMKPT
                     SALVGCNDPVVLPQGSVKGDWEVELGVVIGTKARYVSEADALKHVAGYCVVNDVSERE
                     YQMERGGTWDKGKGCDTFGPVGPWLVTADEIEDPQQLSMWLDVNGKRCQNGSTKTMIF
                     GVAHLVSYVSRFMTLYPGDLISTGTPPGVGLGMKPPTFLKAGDEMHLGIAHLGEQRQR
                     VFAWDPALIDG"
     gene            complement(1412..2350)
                     /locus_tag="VF308_14335"
     CDS             complement(1412..2350)
                     /locus_tag="VF308_14335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007838999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEX7437882.1"
                     /translation="MASFGTLDGTGFEVLEPEFAACLAEPERVARLWTGGRWCEGPAW
                     FAAHRTLVWSDIPNNRMLRLDELNGTVGVFRESSNNSNGNTVDRDGRLVTCEHLTRRV
                     TRTEHDGRITVLADRWQGKRLNSPNDVVVRSDGSIWFTDPSYGILSDYEGARAESEIG
                     ACHVYRIDPATAAVDKVADDFVKPNGLAFSPDESILYIADTGASHDPDGPRHIRQFKV
                     SGDGRRLESSSASSSLFATCTNGLFDGFRLDREGRLWCSAKDGVHAYAADGRFIGKIL
                     IPETVANVCFGGPKRNRLYICATSSLYAIYLKANGL"
     gene            complement(2389..>2644)
                     /locus_tag="VF308_14340"
     CDS             complement(2389..>2644)
                     /locus_tag="VF308_14340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437883.1"
                     /translation="GFSGGNSLDQGEEYLLLTIAVVVIGGTSVSGGRPCVPGIWGAAM
                     FMFLLVAMLNAAGAGPGLRMLLTGLIIIAVIVLAGTRAKR"
BASE COUNT          413 a          870 c          901 g          460 t
ORIGIN      
        1 gttcgggaag cgctagagcg cttgcgggtt ggtgtcgcgg cggaagtgat cggcgatggc
       61 gcgcgcgacc gtcgccgagc agttcaccga ggtcaggatg ccgatgcagt tgcgcgtcgc
      121 cacgcgcccg tcggtgcgca cgatgccttc gaacgtcgcc ggcgcgtcga cgtactgcgt
      181 cgggcgtgcg ccctgtccgg ccgcgtagtc gcgcgcgaag ctgctgaatt cgaggttgtg
      241 gctgtgcacg tgctggcccg gcgcgatggc ctgccgggcg gtgccgatga tctggttgta
      301 gcgccgcacc ggctggcccg cggcgatcgc gcgcaccgcc accttgtggc ccggcgggac
      361 gaggccgctg atcgtgatcc cttcgctcga gacgaccgtg ccgccgacga gttgatgccg
      421 ggcgattacg acatcgtcga gcggatggat ccggatcacg ggggcgacgg cggcagatcc
      481 tgcgttcatc gtcgtctcct cgcgcccgcc tgcgcccaca ggttcatccg tcgatcagcg
      541 ccgggtccca ggcgaacacg cgctggcgct gctcgccgag gtgggcgatg ccgaggtgca
      601 tttcgtcgcc ggccttcagg aacgtcggcg gcttcatccc cagaccgaca cccggcggcg
      661 tcccggtcga gatcaggtcg ccggggtaga gcgtcatgaa gcggctcacg tagctcacga
      721 ggtgagcgac gccgaagatc atcgtcttgg tgctgccgtt ctggcagcgc ttgccgttga
      781 cgtcgagcca catcgagagc tgctgcggat cctcgatctc gtcggccgtc accagccatg
      841 ggccgaccgg gccgaaggta tcgcagccct tgcccttgtc ccaggtgccg ccgcgctcca
      901 tctgatattc gcgctcggac acgtcgttga cgacgcaata gccggcgacg tgcttgagcg
      961 cgtcggcttc ggagacatag cgcgccttcg tgccgatcac gacgccgagc tcgacctccc
     1021 agtcgccctt gaccgagccc tgcggcagca cgaccgggtc gttgcagccg acgagggcgc
     1081 tggtcggctt catgaagatg atcggttcct tcggaatcgc ggcaccggtc tcggcggcgt
     1141 ggtcggagta gttgaggccg atgcagatga acttgcccat cccgcgccac ggcggcgcgg
     1201 tgcggcccgg gttgggcacc agcggcaggg tcgcaaggtc gagccggcgc agccgatcga
     1261 gcatctgcgg ctgcagcgtc tcggcgccga tgtcgggcag cacggcggaa aggtcgtgaa
     1321 cccggccgtt atcgtcgacg agtgcgggtt tttctgcgcc cttggggccg tatcgcatca
     1381 gtttcatggg tctcctgcca gggttcgagg gttacaggcc gttggccttg aggtagatcg
     1441 cgtaaagcga actcgttgcg caaatgtaga gccggttccg cttgggtccg ccgaagcaga
     1501 cattcgccac ggtttcgggt atcagtattt tcccaataaa tcggccgtct gccgcataag
     1561 catgaacgcc gtccttggcg ctgcaccaga ggcgcccctc gcggtcgaga cgaaagccgt
     1621 cgaacagccc gttggtgcag gtggcaaaca gcgaagaaga cgccgatgac gattccaggc
     1681 gccgcccgtc gccgctgacc ttgaactgcc ggatgtgccg cggcccatcc gggtcgtggc
     1741 tggcgccggt gtcggcgatg tacagaatcg attcgtcagg cgagaaggcg agtccgttgg
     1801 gcttgacgaa gtcgtcggcg accttgtcca ccgcggcggt cgcggggtcg atgcggtaga
     1861 cgtggcatgc gccgatctcg ctctcggcgc gcgcgccttc gtagtcggac aagatgccgt
     1921 agctcgggtc ggtgaaccat atcgagccgt ccgaccgcac caccacatcg ttcggcgaat
     1981 tcagacgctt gccttgccag cgatcggcca gcaccgtgat gcggccgtcg tgttcggtgc
     2041 gcgtcacccg acgcgtcagg tgctcgcagg tgaccaggcg cccgtcgcgg tcgacggtgt
     2101 tgccgttcga gttgttcgac gattcccgaa acacgcccac cgtgccgttc aactcgtcga
     2161 gccggagcat gcgattgttc gggatgtccg accacaccag cgtgcggtgc gcggcgaacc
     2221 aggccggccc ctcgcaccag cgcccgccgg tccacaggcg cgcaacgcgc tccggttcgg
     2281 caaggcaggc ggcgaactcg ggctcgagca cttcgaagcc ggtgccatcg agcgtcccga
     2341 aagatgccat cgtttgttct ccttgtcagc gcgctcagcg cagcagtttc aacgctttgc
     2401 gcgcgtgccg gccagcacga tcacggcgat gatgatgagc ccggtcagca gcatgcgcag
     2461 gcctggcccg gcgccggcgg cattgagcat cgccaccagc aggaacatga acatcgcggc
     2521 accccagatg cccggcacgc aagggcgacc gccgctgacc gatgtgcccc cgatcacgac
     2581 cacggcgatc gtcagcaata ggtattcctc gccctggtcg agcgagttgc cacccgaaaa
     2641 cccg
//
LOCUS       DASVHM010000780         2637 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_996994, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000780 DASVHM010000000
VERSION     DASVHM010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2637
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_996994"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            91..2019
                     /locus_tag="VF308_14345"
     CDS             91..2019
                     /locus_tag="VF308_14345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017878866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HEX7437884.1"
                     /translation="MHLNSAKVGASNPARPNKIVSAAEAVRLIHDGDTVATGGFVGIG
                     FAEGIAIALEERFLATQAETGSGSPRQLTLVYAAGQGDGKERGLNHFGHAGLVKRVVG
                     GHWGLVPKLQALAVAGEIEAYNLPQGVISHLFRDIAAGKPGTLSHIGLGTFVDPRHGG
                     GKVNAVTHEDLVRLMEIDGEEVLFYKAFPVQVGIIRATTADADGNLTMEREALTLEAL
                     AIAMAAHNSGGVVIAQVERIAERGSLNPRQVKVPGVLVDCVVVAERPEHHMQTFVTQY
                     SAAFAGEIRVPVSTLLPMPMSARKLIARRAALELKRNAVVNLGIGMPEGVADVATEEE
                     VFDLLTLTAEPGVIGGIPASGLNFGAAVNTQAIIDQPSQFDFYDGGGLDLAVLGLAQA
                     DAQGNLNVSKFGPRLAGAGGFINISQAARAVVFVGTFTTGDLQVRVADGKVHIDSEGT
                     SAKFVREVEHRTFSGERARRLGQSVLYVTERCVFRLAESGGLELIEIAPGIDLERHIL
                     AQMDFTPAISPQLRLMEPGLFDEAPMNLRERMLTLPLAERIDFDARSKVLFVNFEGLA
                     VDSAQDIEEIETEVARRVEPLGARVNVVVNYDHFSIRPELMDAYSAMVQRLAERYYAR
                     VTRYAASGFLKARLEHKG"
     gene            2051..>2637
                     /locus_tag="VF308_14350"
     CDS             2051..>2637
                     /locus_tag="VF308_14350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437885.1"
                     /translation="MARVGSRRNCARSSPGPAGSFRHIAVTRLPKTARITGKNERMQK
                     ALVVAELGQHRLMLPAWVKAALSANDRLKVYLTVLQAAATHASHPNRELPDLTKEIAA
                     AGLGTDWLHDAAAAARRVDEDLILPDLPRLVRCIAGDLATMARPVLETTPSGAQPHPR
                     VQHWLDWLGALATDRLSGPQIEALTHGRRGGADSL"
BASE COUNT          438 a          886 c          929 g          384 t
ORIGIN      
        1 cgttgatggt gatccgatga gacgcggcgg gtgcgttgca cgcaggatgc cctgacgtag
       61 actggaccgg cctctcgcag cagacaaccc atgcacctga actcggccaa ggtcggcgct
      121 tccaacccgg cgcggccgaa caagatcgtc agcgccgccg aggcggtgcg cctgatccac
      181 gacggcgaca ccgtcgccac cggcggcttc gtcggcatcg gtttcgccga gggcatcgcg
      241 atcgcgctcg aagagcgctt cctggcgacg caggccgaga cgggcagcgg ctcgccacgg
      301 cagctgacgc tggtctacgc cgccggccag ggcgacggca aggagcgcgg cctgaaccac
      361 ttcggccacg ccggactcgt caagcgcgtg gtcggcgggc actgggggct ggtgcccaag
      421 ctccaggccc tggcggtggc gggcgagatc gaggcctaca acctgccgca gggcgtgatc
      481 tcgcacctgt tccgcgacat cgcggccggc aagcccggca ccctcagcca catcgggctc
      541 ggcaccttcg tcgacccgcg ccacggcggc ggcaaggtca acgcggtgac gcacgaggat
      601 ctggtgcggc tgatggagat cgacggcgag gaggtgctgt tctacaaggc cttcccggtg
      661 caggtgggca tcatccgcgc gacgacggcc gacgccgacg gcaacctgac gatggagcgc
      721 gaggcgctga cgctcgaagc gctggcgatc gcgatggcgg cccacaacag cggcggcgtc
      781 gtcattgccc aggtcgagcg gatcgccgag cgcggctcgc tgaacccgcg ccaggtgaag
      841 gtccccggcg tgctggtcga ttgcgtcgtg gtggccgagc ggcccgagca ccacatgcag
      901 accttcgtca cgcaatacag cgcggcgttc gcgggcgaga tccgggtccc ggtgagcact
      961 ctgctgccga tgccgatgag cgcgcgcaag ctgatcgcgc gccgtgccgc gctcgagttg
     1021 aaacgcaatg cggtcgtgaa cctgggcatc ggcatgcccg agggcgtggc cgacgtggcc
     1081 acagaagagg aagtgttcga cctgctgacg ctgactgccg agccgggcgt gatcggcggc
     1141 attccggcca gcggcctgaa tttcggcgcg gcggtgaaca cccaggccat catcgaccag
     1201 ccgagccagt tcgacttcta cgacggcggc gggctcgacc tcgcggtact cggcctggcg
     1261 caggccgacg cgcagggcaa cctcaacgtc agcaagttcg gaccgcgcct ggccggggcg
     1321 ggcggcttca tcaacatcag ccaggcggcg cgcgcggtcg tgttcgtcgg cacgttcacg
     1381 accggcgacc tgcaggtgcg cgtggccgac ggcaaggtcc acatcgacag cgaaggcacg
     1441 agcgccaagt tcgtgcgcga ggtcgagcac cgcacgttca gcggcgagcg cgcgcgccgg
     1501 ctcggccaga gcgtgcttta cgtgaccgag cgctgcgtgt tccgcctcgc tgaatcgggc
     1561 ggcttggagc tgatcgagat cgcgcccggg atcgatctcg aacgtcacat cctggcgcag
     1621 atggacttca cgcccgccat cagcccgcag ttgcggctga tggagccggg cctgttcgac
     1681 gaggcgccga tgaacctgcg cgagcgcatg ctgacgctgc cgctggcgga gcggatcgac
     1741 ttcgatgcgc gcagcaaggt cctgttcgtc aacttcgagg gcctggcggt cgacagcgca
     1801 caggacatcg aggagatcga gaccgaggtg gcacgccgcg tcgagccgct gggcgcacgg
     1861 gtgaacgtgg tcgtcaacta cgatcacttc agcatccgcc ccgagctgat ggacgcttac
     1921 agcgcaatgg tgcagcggct tgccgagcgc tattacgcgc gcgtgacgcg ctatgcggcg
     1981 agcggcttcc tcaaggcgcg cctcgagcac aaaggctgag gcggaggccc cccaggcctg
     2041 tttcaggcgg gtggctcgag tcggcagccg tcggaattgc gccagatcaa gcccgggccc
     2101 cgccggctca tttcgccaca ttgctgtcac gcggctgccc aagactgctc gaatcaccgg
     2161 caagaatgaa cgtatgcaaa aagcgctagt cgtggcggaa ctgggtcagc acaggttgat
     2221 gttgccggcc tgggtcaagg ccgccctgtc cgccaacgac cgcctcaagg tgtacctgac
     2281 ggtccttcag gcggcggcga cgcatgcctc gcatccgaac cgtgagctgc ccgatctgac
     2341 gaaggagatc gcagccgccg gcctgggcac cgattggctt cacgacgctg cggcggcggc
     2401 gcggcgagtc gacgaagacc tgattcttcc cgacctgccg cggctcgtca ggtgcatcgc
     2461 gggcgacctc gccacgatgg cccgtccggt gctcgagacc acgccgtccg gcgcgcagcc
     2521 gcatccgcgc gtgcagcatt ggctcgattg gctcggcgcg ctcgcaacgg atcggctcag
     2581 cggcccgcag atcgaagcgc tgacacatgg ccgtcgaggc ggcgcggaca gtctgca
//
LOCUS       DASVHM010000781         1514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_850754, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000781 DASVHM010000000
VERSION     DASVHM010000781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_850754"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1514)
                     /gene="secA"
                     /locus_tag="VF308_14355"
     CDS             complement(<1..>1514)
                     /gene="secA"
                     /locus_tag="VF308_14355"
                     /inference="COORDINATES: protein motif:HMM:NF019155.4"
                     /note="functions in protein export; can interact with
                     acidic membrane phospholipids and the SecYEG protein
                     complex; binds to preproteins; binds to ATP and undergoes
                     a conformational change to promote membrane insertion of
                     SecA/bound preprotein; ATP hydrolysis appears to drive
                     release of the preprotein from SecA and deinsertion of
                     SecA from the membrane; additional proteins SecD/F/YajC
                     aid SecA recycling; exists in an equilibrium between
                     monomers and dimers; may possibly form higher order
                     oligomers; proteins in this cluster correspond SecA1;
                     SecA2 is not essential and seems to play a role in
                     secretion of a subset of proteins; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEX7437886.1"
                     /translation="IVARHEAGQPILVGTIAVETSETLSKRLKKKGVPHEVLNAKPEY
                     AEREGETISQAGRPGAVTIATNMAGRGVDIKLGGNAEEMAKIELRKRNIEPGDENYEA
                     ELKAVTDEFEREVAGEHEKALEAGGLYICGTERHESRRIDNQLRGRSGRQGDPGESRF
                     FLSAEDDLVRLFAGERIYRILDRFGDTDEEGHELPIEAGILSKQIEGAQKKVEEQNYL
                     SRKHVLEYDDVMNQQREVIYEFRDGILEGKDMSEPAREHMRSVFERLVAEYTQGDTPQ
                     EWDIRELFLQLDQVFPTSFGPDDINVMGMERKDLVDTITEEAIEAYDDKEEELGAELM
                     RELERHVLLEIIDERWREHLNDMDYLREGIHLRGFAEVQPIVAYKNEGFTMFTEMMET
                     IWEEFARIIYHFELTDEGERERAQQRMLDATKSSSTAQFSYSGAGEPSYGVGAAVAAA
                     AADSADDPLAAVGVQSRSNSTAAGRGNGAAGAKQAPAAGFDPDGNPMSRNQPCW"
BASE COUNT          201 a          512 c          484 g          317 t
ORIGIN      
        1 caccagcaag gttggttgcg gctcatcggg ttgccgtcgg ggtcgaaacc ggcggcgggc
       61 gcctgcttgg cgccggcggc gccgttgccc cgtccggccg ccgttgagtt ggagcggctc
      121 tgcacgccga cggccgccag cggatcatcc gccgaatcgg ccgcggctgc cgcgaccgcg
      181 gcgccgacgc cgtagcttgg ctcacccgcg ccgctgtagc tgaactgagc cgtgctcgag
      241 ctcttggtcg cgtcgagcat ccgctgctga gcgcgttcgc gctcaccttc gtcggtcagc
      301 tcgaagtggt agatgatgcg ggcgaactct tcccagatgg tctccatcat ctcggtgaac
      361 atggtgaagc cctcattctt gtaggcgacg atcggctgca cctcggcgaa gccgcgcaag
      421 tggatgccct cgcgcagata atccatgtcg ttgaggtgct cgcgccagcg ctcgtcgatg
      481 atctcgagca gcacgtgacg ctcgagttcg cgcatcagct cggcgccgag ctcttcctcc
      541 ttgtcgtcgt aggcctcgat cgcctcctcg gtgatcgtgt cgaccaggtc tttgcgctcc
      601 atgcccatca cgttgatgtc gtcgggacca aagctcgtcg ggaagacctg gtcaagttgc
      661 agaaacagct cgcgaatgtc ccattcctgc ggtgtgtcgc cctgtgtgta ctcggcgacc
      721 agccgttcga acacgctacg catgtgttcg cgcgccggct cgctcatgtc cttgccctcg
      781 agaatgccgt cgcgaaattc gtagatcacc tcgcgctgct ggttcatcac gtcgtcgtac
      841 tcgagtacat gcttacgcga caggtagttc tgctcctcga ccttcttctg cgcgccctcg
      901 atctgcttgc tgaggatgcc ggcctcgatc ggcagctcgt ggccctcctc gtcggtgtcg
      961 ccgaagcggt cgaggatgcg gtagatccgc tcgccggcga acagccgcac gaggtcgtct
     1021 tcggccgaca ggaagaagcg tgactcgccg gggtcgccct gacggccgga gcgaccgcgc
     1081 agctggttgt cgatgcggcg gctctcgtga cgctcggtgc cgcagatgta gagtccgccg
     1141 gcctcaagcg ccttctcgtg ctcgccggcg acctcccgct cgaattcgtc ggtgacggcc
     1201 ttcagctcag cttcgtagtt ctcatcgccg ggctcgatgt tgcgcttgcg cagctcgatc
     1261 ttggccatct cctcggcgtt gccgccgagc ttgatgtcaa cgccgcggcc ggccatgttc
     1321 gtcgcgatcg tgaccgcgcc ggggcggccg gcctgggaga tcgtctcgcc ctcgcgctct
     1381 gcgtactcgg gcttggcgtt gagcacctcg tgggggacgc ccttcttctt caggcgcttc
     1441 gaaagcgtct cgctggtctc gaccgcgatc gtacccacca ggatcggctg gccggcctcg
     1501 tggcgcgcga cgat
//
LOCUS       DASVHM010000782         5938 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1284848, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000782 DASVHM010000000
VERSION     DASVHM010000782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5938
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1284848"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VF308_14360"
     CDS             complement(<1..285)
                     /locus_tag="VF308_14360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437887.1"
                     /translation="MKKIVPWLFAATLAFAVPLSQAVTLRVSDQGDVQSMDPHSLNES
                     LQLSFTGNVYESLIERDKTMGLAPALATKWTQQSPTVWRFDLRQGVKFHDG"
     gene            complement(312..1295)
                     /locus_tag="VF308_14365"
     CDS             complement(312..1295)
                     /locus_tag="VF308_14365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437888.1"
                     /translation="MFAFVLRRLVQAVLVMLTVAFIAFMLFQYVGDPVTNILGQDATP
                     QQRQQLRTDLGLDSAFPVQFARFVGNAVRGEFGLSLRQGRKVSSLIAERLPATLELTM
                     LAALIALAFGIPMGVYSALKRGTFISQAMMTISLIGVSLPTFLIGILLILVFAVTLKW
                     LPSFGRGEVVAFGPWTTGMTSIDGWRHLVLPSITLAIFQLTLIMRLVRSEMLEVLRAD
                     YIKFARARGLPDRAVYFRHALKNTLVPVMTITGLQIGGLIAFAIITETVFQWPGMGLL
                     FIQAVQFADIPVMAAYLCLIALIFVIINLVVDLLYFAVDPRLRVERSAGAH"
     gene            complement(1541..2608)
                     /locus_tag="VF308_14370"
     CDS             complement(1541..2608)
                     /locus_tag="VF308_14370"
                     /inference="COORDINATES: protein motif:HMM:NF024996.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HEX7437889.1"
                     /translation="MKKSLLALAVLGAYAGVASAQSSVTLYGTVDLSGKYVKNDGSAK
                     RLSLGRDGINSSQLGFRGIEDLGGGLKAGFLLLSSVGADSGDIGAGQSAAGSGKFWTR
                     RSTVSLFSNGGELRLGRDYTPTFWNDTIFDAFGTNGLGDSTHVLQMATTTFVRADNSI
                     GYFLPANIGGFYGQGMVAASEPGQAGQTSNGGRYVGGRVGFAAGPFDVAIAAAEQRNA
                     PLATQTQKTYNLGGAWDFGFLKLMGYIDRDTAPGLRETRGSISAVVPMGQGEIHVGYD
                     RSKLRNNIVPAAAFSNTIWQAKATYQYNLSKRTAMYATIAEVANGDFSRAGVASGTSI
                     NAAPTLGGKSKGFEAGIRHFF"
     gene            2826..3467
                     /gene="coq7"
                     /locus_tag="VF308_14375"
     CDS             2826..3467
                     /gene="coq7"
                     /locus_tag="VF308_14375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone
                     monooxygenase"
                     /protein_id="HEX7437890.1"
                     /translation="MNPIRLSAADRLLAVADHALRALTSTPQAARPKPVATAPGERLD
                     DDERRRAGALMRVNHVGEVCAQALYSAQALATADPALRRQFEQAAGEETDHLAWTAER
                     LVELGARPSLLNPLWYAGAFAIGLVAARAGDARSLGFLIETERQVERHLEGHLEQLPA
                     GDHASRAIVAQMKDDEAAHALAAEQAGGTRLPAPIRWAMRAAAKVMTTTAHYV"
     gene            complement(3458..3895)
                     /locus_tag="VF308_14380"
     CDS             complement(3458..3895)
                     /locus_tag="VF308_14380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006298186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEX7437891.1"
                     /translation="MECTIDWLAASGMAFSAETGSGHLLTMDGAADGGGRNLAPRPME
                     TVLAGTGACAAYDVVLILKRGRHDVRSCRVKVTSERAAADPKVFTKIHLHFVVGAVGV
                     PAAAVERAIALSHDRYCSATIMLAKTAAITTSYELVASGDGQT"
     gene            4157..5710
                     /gene="ilvA"
                     /locus_tag="VF308_14385"
     CDS             4157..5710
                     /gene="ilvA"
                     /locus_tag="VF308_14385"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - L-threonine ammonia-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HEX7437892.1"
                     /translation="MATSARKNTPKRSIELAGYLQKILTARVYDVAIESALDPAPALS
                     ARLDNRIFFKREDTQAVFSFKLRGAYNKMAHLTPVALARGVICASAGNHAQGVALAAR
                     RLGCHALVVMPTTTPSLKVGAVRALGAEVVLFGDSYSDAYAKARALESERGLTFVHPF
                     DDPDVIAGQGTIAMEILRQHQGPIDAIFVAVGGGGLISGIAAYVKAVRPEIRVVGVQM
                     NDSDAMMRSIDAGERIELADVGLFSDGTAVKRVGAETFRIARELVDEWIVVDTDAACA
                     AIKDVFEDTRSILEPAGALGVAAIKQYVHTHATHGETYVAITCGANMNFDRLRFVAER
                     AEVGEEREALFAVTIPEERGSFRRFCEVIGPRAVTEFNYRISQGPLAHILVGIATIDR
                     AESALLAREFESHGFAAVDLTGDELAKEHVRHMVGGRSPLAKDERLYRFVFPERPGAL
                     MRFLSSMPAGWNISLFHYRNQGADYGRILVGMQVPPADEDRFRDFLATLAYPCADETA
                     NPAYRLFLA"
     gene            complement(5729..>5938)
                     /locus_tag="VF308_14390"
     CDS             complement(5729..>5938)
                     /locus_tag="VF308_14390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437893.1"
                     /translation="RMQAAQAAAQAALAGQAGQGAAVPGAFPGAAPALGMPQAPIVQP
                     PQGVPGPPLPAPAPSLPTQGGLPTQ"
BASE COUNT         1020 a         2003 c         2000 g          915 t
ORIGIN      
        1 gccatcgtga aacttgactc cctgacggag atcgaagcgc cacaccgtcg ggctttgctg
       61 cgtccatttg gtggcaagtg caggcgccag acccatcgtc ttgtcccgct cgatcagcga
      121 ttcgtacaca ttgccggtga agctgagctg aaggctctcg ttgagcgaat gcggatccat
      181 cgactgcacg tcgccttgat ctgagactcg aagagtcacc gcctgcgaca gcggcaccgc
      241 gaacgcgaga gtggcggcga acagccaggg aacgattttc ttcatgggag tcttccttgt
      301 gagaaattcg atcagtgcgc gccggccgac cgctcgacgc gcagccgtgg gtcgacggcg
      361 aaatagagaa gatcgacgac gagattgatg atgacgaaga tgagggcgat caggcacagg
      421 taggcggcca tcaccggaat gtcggcgaac tgcaccgcct ggatgaagag caaccccatc
      481 cccggccact ggaacacggt ctcggtgatg atcgcgaagg cgatcaggcc gccgatctgc
      541 aggcccgtga tcgtcatcac aggcaccagc gtgttcttga gcgcgtggcg aaagtaaacg
      601 gcgcggtccg gcaggccgcg cgcgcgcgcg aacttgatgt agtcggcgcg cagcacctcg
      661 agcatctccg agcgcacgag acgcatgatc agcgtgagct ggaatatcgc cagcgtgatc
      721 gacggcagca ccaggtggcg ccagccgtcg atgctcgtca tgccggtcgt ccacggaccg
      781 aaggcgacga cctcgccgcg gccgaagctc ggcagccatt tcagcgtgac ggcgaagacg
      841 aggatgagca ggatgccgat caggaaggtc ggcagcgaca cgccgatcag ggagatcgtc
      901 atcatcgcct gagagatgaa cgtgccgcgc ttgagcgcgg agtagacgcc catcggaata
      961 ccgaaggcca gggcgatgag ggcggcgagc atcgtcagct cgagcgtcgc cggcagccgt
     1021 tcggcgatga gcgacgagac cttgcgtccc tggcgcaggc tgagcccgaa ttcgccgcgc
     1081 acggcgttgc cgacgaagcg cgcgaactgg accggaaacg cgctgtcgag gccgaggtcg
     1141 gtacgcaact gctggcgctg ctgcggcgtc gcgtcctggc cgaggatgtt cgtgaccgga
     1201 tcgccgacgt actggaacag catgaaggcg atgaaggcca ccgtcagcat gacgagaacg
     1261 gcctggacga gtcggcgtag gacgaaggcg aacatggacc cgaggtgcac ctgatgaacc
     1321 gcacggccac tcgacgggct cggtgactgg cggcgcccgc gctgctgcgg actcgaaacg
     1381 attcggctgc gccgtcgtcg cgctcagcca atgagagcaa aacgcacgcc actcgtcaaa
     1441 agggattgcc cgcatcgccg gcgcgaacgg gcatgaaaaa ggccgcccgg aggcggcctt
     1501 tcaaaggctg atcgggaaac tcgctcgcgc gagcgtcggg tcagaagaag tggcgaatgc
     1561 ccgcttcgaa gcccttcgac ttgccgccga gggtcggagc ggcgttgatc gaagtgccgc
     1621 tggcgacgcc ggcgcgcgag aaatcaccgt tggcgacttc ggcgatggtg gcgtacatcg
     1681 cggtccgctt ggacaggttg tactggtacg tcgccttggc ctgccagatc gtgttgctga
     1741 acgcggccgc gggaacgatg ttgttgcgca gcttgctgcg atcgtagccg acgtgaattt
     1801 cgccctgacc catcggaacg accgcgctga tcgagccgcg cgtttcacgc agacccgggg
     1861 cggtgtcgcg atcgatatag cccatcagct tcaggaagcc gaagtcccag gcaccgccca
     1921 ggttgtaggt cttctgcgtc tgagtggcga ggggcgcgtt gcgctgttca gccgccgcga
     1981 tcgcgacgtc gaacgggccg gcggcgaagc cgacacgacc gccgacgtag cggccaccgt
     2041 tgctcgtctg acctgcttga cccggctctg aggcggcgac catcccctga ccgtagaagc
     2101 cgccaatgtt cgccggcagg aaatagccga tcgagttgtc ggcgcggacg aaggtcgtcg
     2161 tcgccatctg cagcacgtgg gtcgaatcgc ccaggccgtt ggtgccgaac gcgtcgaaaa
     2221 tcgtgtcgtt ccagaacgtc ggcgtgtagt cgcggccgag gcgaagctcg ccgccgttgc
     2281 tgaacaggct gaccgtcgaa cgacgcgtcc agaacttgcc cgaaccggcc gccgactggc
     2341 cggcgccgat gtcgccggaa tccgcgccga cgctggagag cagcaggaag ccggccttca
     2401 ggccgccgcc gaggtcttcg ataccgcgga agccgagctg gctgctgttg atgccgtcac
     2461 ggcccaggct gaggcgcttg gccgagccgt cgttcttgac gtatttgccg ctgaggtcaa
     2521 cggtaccgta gagggtgacc gacgactgag ccgacgcgac gcccgcataa gcgcccaata
     2581 cagcgagagc gagcagagat tttttcattg caactatctc ctaggttgaa taagaggtcc
     2641 cgatcaccaa aaacccgcgc tggagcagat caggcacaac cccctcagcg ggaagttgga
     2701 tgtattgcac cagagggacc cggggctgga aagccttgcc gaacaaaaaa aggccttatg
     2761 ttgtcttggc acaacgagga tttcgccgga tgtatcgggc gtccgaggct attctggcga
     2821 ccctcatgaa ccctatccgt ctctccgctg ccgaccgctt gctcgccgtt gccgaccatg
     2881 ccttgcgcgc cctcacgagc acgccgcagg cggcgcggcc taagccggtc gcgaccgctc
     2941 cgggcgagcg tctcgacgac gacgaacggc ggcgcgccgg ggcgttgatg cgcgtcaacc
     3001 acgtcggcga ggtctgtgcc caggcgctct acagcgcaca ggcgctcgcc accgccgacc
     3061 ctgccctgcg tcgccagttc gagcaggccg ccggcgaaga gaccgatcac ctcgcttgga
     3121 ccgccgagcg actcgtcgag ctcggcgcgc gcccgagcct gctcaatccg ctctggtatg
     3181 cgggcgcctt cgccatcggc cttgtcgcgg cccgcgccgg cgacgccaga agcctcggct
     3241 tcctgatcga gaccgagcgt caggtcgagc gtcacctcga aggccacctc gagcagctgc
     3301 ctgccggcga ccatgcgtcg cgcgcgatcg tcgcgcagat gaaggacgac gaagccgccc
     3361 acgcgttggc cgcagagcag gccggcggga cccgactgcc ggcgccgatc cgctgggcga
     3421 tgcgcgccgc cgccaaggtg atgacgacga ccgctcacta cgtctgaccg tcgccgctcg
     3481 cgacgagctc gtagctggtc gtgatcgccg cggtcttggc gagcatgatc gtcgccgagc
     3541 agtagcggtc gtgcgacagc gcgatcgcgc gctcgacggc cgccgccggc acgccgacag
     3601 cgccgacgac gaagtggagg tggatcttcg tgaacacctt cgggtccgcc gcggcgcgct
     3661 cggaggtcac cttgacccgg cagctgcgca cgtcgtgacg accgcgcttg aggatcagga
     3721 cgacgtcgta ggccgcgcac gcgccggtcc cggcgagcac cgtttccatc ggccgcggcg
     3781 cgaggttgcg gccgccgcca tcggcggcgc cgtccatcgt cagcaggtgg ccgctaccgg
     3841 tctcggcgct gaacgccatg ccgctcgcgg ccagccagtc gatcgtgcat tccatcgtcg
     3901 cgctccgata ttgcagtgca gcaaaaaacc acctacactg ggtttcagtc gatccagcgt
     3961 ctcgtgccga ggggccggcg ctgaacgggt cgagccgatt gtctcctcca ccttcttcat
     4021 tggtggattc agcccaaggc cgcaacgcct tgggcttttt tctggacccg cgggcgccac
     4081 ggaaagcgat ggggcgccgc aagcgccgcg tatgatgcgc tgccgcaatc gtgtgccgtc
     4141 ggagaccaca acaggcatgg cgacctccgc ccgcaagaac acgccgaagc gctcgatcga
     4201 gctcgcggga tacctgcaga agatcctcac cgcccgcgtc tacgacgtcg cgatcgagtc
     4261 ggcgctcgac ccggcgcctg cgctctcggc ccggctcgac aaccggatct tcttcaagcg
     4321 cgaggacacg caggcggtgt tcagcttcaa gctgcgcggc gcctacaaca agatggcgca
     4381 cctcacgccg gtcgcgctcg cgcgcggcgt gatctgcgcc tccgcgggca accatgccca
     4441 gggcgtcgcg ctggcggcgc gccggctcgg ctgccacgcg ctggtcgtga tgccgacgac
     4501 gacgccgtcg ctcaaggtcg gcgccgtgcg cgcgctcggc gccgaggtcg tcctcttcgg
     4561 cgacagctac tccgacgcct acgcgaaagc gagggcactc gaaagcgagc gcggcctcac
     4621 gttcgtccat ccgttcgacg accccgacgt catcgccggc cagggcacga tcgcgatgga
     4681 gatcctgcgc cagcaccagg ggccgatcga cgcgatcttc gtcgccgtcg gcggcggcgg
     4741 gctgatctcg ggaatcgccg cctacgtgaa ggccgtacgg cccgagatcc gcgtcgtcgg
     4801 cgtgcagatg aacgactccg acgcgatgat gcgatcgatc gatgccggcg agcgcatcga
     4861 gctcgccgac gtcggcctct tctccgacgg caccgcggtc aagcgcgtcg gcgccgagac
     4921 cttccgcatc gcccgcgagc tggtcgacga atggatcgtc gtcgacaccg atgccgcgtg
     4981 cgccgccatc aaggacgtct tcgaggacac gcgcagcatc ctcgagcccg ccggcgcgct
     5041 cggcgtcgcc gcgatcaagc agtacgtcca cacgcacgcg acgcacggcg agacctacgt
     5101 cgcgatcacc tgcggcgcga acatgaactt cgatcggctg cgcttcgtcg ccgagcgcgc
     5161 cgaggtcggc gaagagcgcg aggccctgtt cgcggtgacg atccccgagg agcgcggcag
     5221 ctttcgccgc ttctgcgaag tgatcggtcc gcgcgcagtg accgagttca actaccgcat
     5281 ctcgcagggg ccgcttgccc acatcctggt cggcatcgcg acgatcgacc gcgccgagtc
     5341 ggcgctgctc gcgcgcgagt tcgagagcca cggcttcgcc gccgtcgacc tcacgggcga
     5401 cgagctggcg aaggagcatg tgaggcacat ggtcggcggc cgcagcccgc tcgccaagga
     5461 cgagcgcctc tatcgcttcg tctttccgga gcggccgggc gcgctgatgc gctttctctc
     5521 gagcatgccg gcgggctgga acatcagcct cttccactac cgaaaccagg gcgccgacta
     5581 cggccgcatc ctggtcggca tgcaggtgcc gccggccgac gaggatcgct ttcgcgactt
     5641 cctcgccacg ctggcctacc cgtgcgcgga cgagacggcc aatccggctt atcgactctt
     5701 tctcgcttga cggcgcgaag ccgggtcgct actgggtcgg caggccgccc tgcgtcggca
     5761 ggctcggcgc cggcgccggc agcggcgggc ccggaacgcc ctggggcggt tgcacgatcg
     5821 gcgcttgcgg catcccgagc gcgggcgccg cgccgggaaa cgcgcccggc accgccgcgc
     5881 cttgtccggc ctggcccgcg agcgcggctt gcgccgcggc ctgggcggcc tgcattcg
//
LOCUS       DASVHM010000783         3116 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_200686, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000783 DASVHM010000000
VERSION     DASVHM010000783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3116
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200686"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(17..772)
                     /gene="phbB"
                     /locus_tag="VF308_14395"
     CDS             complement(17..772)
                     /gene="phbB"
                     /locus_tag="VF308_14395"
                     /EC_number="1.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018454 - acetoacetyl-CoA reductase
                     activity [Evidence IEA];
                     GO_process: GO:0042619 - poly-hydroxybutyrate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetyl-CoA reductase"
                     /protein_id="HEX7437894.1"
                     /translation="MTNGKQQRVVLVTGGMGGLGESISTKMADAGYRVVVTYSPGNTK
                     HDAWVAQMKKNGYEILAVACDVADFDSCSRAVAEVQGKAGAVDVLVNNAGITRDMTFK
                     KMDKISWDVVMRTNLDSLFNMTKQVIDGMVERNWGRIINVSSVNGSKGAFGQTNYSAA
                     KAGVHGFTKALALEVAKKGVTVNTISPGYIGTKMVMAIPQEVLESKILPQIPMMRLGK
                     PEEVAGLVAYLSSDEAAFVTGANISINGGQHMF"
     gene            complement(932..2071)
                     /locus_tag="VF308_14400"
     CDS             complement(932..2071)
                     /locus_tag="VF308_14400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013393562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX7437895.1"
                     /translation="MKIGIIGGGPAGLFYAYLMKRADPAHAIRLVERDPENATYGWGV
                     VFSDVALAFVRDVAPELYESMTRNQEVYDDMAVVHRGEQVTLAHNVFHRMARIDLLRA
                     LHEHCARVGVAVAFEHKADDVSEFADCDLIVAADGAHSAIRGRYREHFEPSLDVRPNH
                     FAWYGTTRLFEPLSLIFRQNADGLLIAHTYRYSRTHSTFLVECDPATFAAAGLDRASE
                     AGSLAYCEKVFADDLQGHPLLSNKSSWFRYTIVKNRHWHWRNVVLLGDALRTGHPSIG
                     SGTRLAMQDSIALFEASRKFEGDVPRLLAEFERTRRPGSDALQAAAIKSTEWYENLGP
                     KLHLDPVSFAYDYLVRNGRIAHAQVRERDPALAAAYEKLHPEVLS"
     gene            complement(2079..>3116)
                     /gene="gtdA"
                     /locus_tag="VF308_14405"
     CDS             complement(2079..>3116)
                     /gene="gtdA"
                     /locus_tag="VF308_14405"
                     /EC_number="1.13.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006222494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047922 - gentisate 1,2-dioxygenase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gentisate 1,2-dioxygenase"
                     /protein_id="HEX7437896.1"
                     /translation="DERRHFYDEISKANLTPLWEVLHALVPTAPATPCVPAHWRYAEL
                     RPHLMRAGELISAEEAVRRVLILENPALRGQSCVTQSLYAGLQLILPGEVAPSHRHTQ
                     SALRFIVEGRGAYTAVDGERTTMEPGDFIITPSWTWHDHGHEAEGPVVWLDGLDIPLI
                     RFLDAGFAETYPQPVQPVLRPEGTNHARWSANMAPLRHDAPHGATSPIFSYPYARSRE
                     ALATLAKNAPIDAWDGVKLRYVNPATGGAPMPTMATFMQLLPAGFRSLPSRQTDGAVY
                     SVVEGSGHAVIGSGDKRLRFDFSPRDHFVVPSWQTLELEANEDCVLFSFSDRPVQQAV
                     GVWREERLSAA"
BASE COUNT          491 a         1020 c         1059 g          546 t
ORIGIN      
        1 gacaacgcgc cgcgcatcaa aacatgtgct gaccgccgtt gatcgatata ttggcgccgg
       61 tgacgaacgc tgcctcgtcg gacgacagat aggccaccag gccggctact tcttccggct
      121 tgcccaggcg catcatcggg atctgcggca ggatcttcga ttccagaacc tcctgcggaa
      181 tggccatcac catcttggtg ccgatgtagc cgggcgagat ggtgttgacg gtgaccccct
      241 tcttcgcgac ctcgagcgcc aacgccttgg tgaagccgtg cacgccggcc ttcgccgccg
      301 agtagttggt ctggccgaag gcgcccttcg agccattcac cgacgagacg ttgatgatgc
      361 ggccccagtt gcgctcgacc atgccgtcga tgacctgctt ggtcatgttg aagaggctgt
      421 cgaggttggt gcgcatgacc acgtcccagc tgatcttgtc catcttcttg aacgtcatgt
      481 cgcgcgtgat gccggcgttg ttgacgagca cgtcgacggc gccggccttg ccttgcacct
      541 cggccacggc gcgcgagcag gagtcgaagt cggcgacgtc gcaggcgacc gcgaggatct
      601 cgtatccgtt cttcttcatc tgcgcgaccc aagcgtcgtg cttggtgttg ccgggcgaat
      661 aggtcacgac gactcgatag ccggcgtcgg ccatcttggt ggaaatcgat tcgccaaggc
      721 cgcccatgcc gccggtgacg agcaccaccc gttgttgctt gccgtttgtc atgtcatgtc
      781 tccttgctgg ttgatcctgg aaaagcgcaa aacgcttcca tgatgcgccc gccggcgcgc
      841 cttgtgccat tctgggaata cccgaacggc cattatccag gcgccggcgg ccaacctggc
      901 ctcgatcact tcgcgcaact gccgccgccg atcacgacaa gacctccgga tgtagctttt
      961 cgtaagccgc cgcaagcgcc gggtcgcgct cgcgcacctg ggcgtgggcg atgcggccgt
     1021 tgcggaccag gtagtcgtag gcgaacgaga ccgggtcgag gtgcagcttg gggccgaggt
     1081 tctcgtacca ctcggtgctc ttgatcgccg cggcctgcag cgcgtcggac ccgggccggc
     1141 gcgtgcgttc gaattcggcc agcaaccggg gcacgtcgcc ctcgaacttg cggctcgcct
     1201 cgaagagggc gatcgagtcc tgcatcgcga gccgcgtgcc cgaaccgatc gaggggtgcc
     1261 cggtgcgcaa ggcgtcgccg agcagcacga cgttgcgcca atgccagtgg cggttcttca
     1321 cgatcgtgta gcgaaaccag ctcgacttgt tcgacagcag cgggtgccct tgcaggtcgt
     1381 cggcgaagac cttttcgcag tacgcgaggc tcccggcttc cgacgctcgg tcgagccccg
     1441 ccgcggcaaa ggtcgccggg tcgcactcga ccaggaaggt gctgtgggtg cggctgtagc
     1501 ggtaggtgtg ggcgatcagc aggccgtcgg cgttctggcg aaagatcagc gacagcggtt
     1561 cgaagagccg cgtggtgccg taccaggcga agtggttggg ccggacatcg agcgacggct
     1621 cgaagtgctc ccgatagcgg ccgcggatcg cactgtgggc gccgtcggcg gcgacgatca
     1681 ggtcgcagtc ggcgaactcg ctgacgtcgt cagccttgtg ctcgaacgcg accgcgacgc
     1741 cgacccgggc gcagtgctcg tgcagcgcgc gcagcaggtc aatgcgcgcc atccggtgga
     1801 acacgttgtg ggcgagcgtg acctgctcgc cccggtgcac gaccgccatg tcgtcgtaga
     1861 cctcctggtt gcgggtcatg gactcgtaga gctcgggcgc gacgtcgcgc acgaaggcga
     1921 gtgcgacatc ggaaaacacc acgccccaac cgtaggtcgc gttctccggg tcgcgttcga
     1981 ccaggcgaat cgcatgcgcc gggtcggcgc gcttcatcag gtaggcgtag aacaaccccg
     2041 cggggccgcc gccgatgatg ccgatcttca tcctcggctc aggcggcgga caggcgttcc
     2101 tcgcgccaga cgccgaccgc ttgctggacc ggccggtcgg aaaagctgaa cagcacgcag
     2161 tcctcgttcg cctccaactc gagggtctgc cacgacggca cgacgaaatg gtcgcgtggc
     2221 gaaaaatcga acctgagcct cttgtccccc gaaccgatca cggcgtggcc cgatccttcg
     2281 acgacgctgt agacggcgcc atcggtctgc cggctcggca acgatcggaa acccgccggg
     2341 agcagctgca tgaaggtcgc cattgtcggc atcggcgcgc cgccggtggc ggggttcacg
     2401 tagcgcagct tgaccccgtc ccaggcatcg atcggcgcgt tcttcgcgag cgtggcgagc
     2461 gcttcgcggc tgcgcgcgta cggatagctg aagatcggcg acgtcgcgcc atgcggcgcg
     2521 tcgtggcgca gcggtgccat gttcgcgctc cagcgcgcgt ggttggttcc ttcgggacgc
     2581 agcacgggct ggaccggctg cggataggtt tcggcgaagc ccgcatcgag gaagcggatc
     2641 agcgggatgt cgaggccgtc gagccacacc accggacctt cggcttcgtg gccgtggtcg
     2701 tgccaggtcc agctcggcgt gatgatgaaa tcgcccggct ccatcgtcgt gcgctcgccg
     2761 tcgacggcgg tgtaggcgcc ccggccttcg acgatgaagc gcagcgccga ctgggtgtgg
     2821 cggtggctcg gcgccacctc gcccggcagg atcagctgca acccggcgta gagcgactgc
     2881 gtgacgcatg actgcccgcg cagcgccggg ttctcgagga tcagcacgcg ccgcaccgcc
     2941 tcttcggcgc tgatcagttc gccggcgcgc atcaggtgcg ggcgcagttc ggcgtagcgc
     3001 cagtgcgccg gcacgcacgg cgtcgccggc gccgtgggca ccaacgcatg cagcacttcc
     3061 cagagcgggg tcaggttcgc tttcgagatc tcgtcgtaga agtgccgccg ttcgtc
//
LOCUS       DASVHM010000784         2145 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_997578, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000784 DASVHM010000000
VERSION     DASVHM010000784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_997578"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..503)
                     /gene="sdhC"
                     /locus_tag="VF308_14410"
     CDS             complement(126..503)
                     /gene="sdhC"
                     /locus_tag="VF308_14410"
                     /inference="COORDINATES: protein motif:HMM:TIGR02970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HEX7437897.1"
                     /translation="MSSPPRPRFLDLTKIRMPVGALTSIGHRLSGIVLAAFVAPAVYL
                     LALSLRDERSYAEVTGLLGHPVFRAAMAIVAWALAHHLLAGIRHLLSDFDVGSPLRSA
                     RRSAWLVNVGAIVVALLAAALLL"
     gene            538..1125
                     /locus_tag="VF308_14415"
     CDS             538..1125
                     /locus_tag="VF308_14415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011871317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HEX7437898.1"
                     /translation="MQHRGGPGIGTTAGAAGAPDAGCEVLTVGHSTRPIEEFVAMLAA
                     HRVTQLVDVRTVPRSRHNPQFNGDAVPASLAAANIGYVHAPGLGGFRHATPDSPNCGW
                     RNLSFRGYADYMQGAEFAENLVGLIELARHDRVVLMCAEAVPWRCHRSLIADALVVHG
                     IATCEIASARRLQAHRLTPFARVRGLEITYPPATP"
     gene            1167..1592
                     /locus_tag="VF308_14420"
     CDS             1167..1592
                     /locus_tag="VF308_14420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437899.1"
                     /translation="MTSRQSDVRDQSKQRQRALQRWENEGGAGPGRLAADAEPGEMHV
                     NDPPLSNAELVQLQIRVIALENLVIALLSQASDRQLDLARAMVAHISPRPSFTAHRLT
                     IHAAAQMISLVERAGYFRAPGDTVNATTTMDPPLVDDRP"
     gene            complement(1629..>2145)
                     /locus_tag="VF308_14425"
     CDS             complement(1629..>2145)
                     /locus_tag="VF308_14425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX7437900.1"
                     /translation="PAWAWLLPLGMLAFVYPLRAWRDAPIFPTPTGSLLGLSQGVPLA
                     NGAAVLDAGCGLGAGLVELRREYPNARLEGIEWSWPLWLAGAARCRFARVRRGDFWSV
                     DWSRFALVYLFQRPESMGRAAAKAAHELHPGAWLASLEFEIATLQPQLVLDSGDGRRV
                     WLYRAPFRTRA"
BASE COUNT          383 a          758 c          724 g          280 t
ORIGIN      
        1 ccacgcggca tagccatgga ccggctggag cgcgaacgag gcgagcagaa agaccacgac
       61 gagcaacatg ccggcggcgc tggcgcgttg cacccaccac gccgcgaggc ccgtgaagcc
      121 cggtctcaca gcaggagtgc cgcggccagc aaggcgacga cgatcgcgcc cacgttgacc
      181 agccaggcgc tgcgacgcgc cgagcgcagc ggcgagccga cgtcgaagtc cgacagcagg
      241 tgacggattc ctgccagcag atggtgcgcc agcgcccagg ccacgatcgc catcgccgcc
      301 ctgaagaccg gatgaccaag caggccggtc acctcggcat acgaccgctc gtcgcgcagc
      361 gagagagcga gcaggtagac ggccggcgca acgaacgccg ccagcacgat gccgctcagc
      421 cggtggccga tcgaagtcag tgcgccgacc ggcatccgga tcttcgtgag gtcgagaaac
      481 ctcggtcgag gcggcgaaga cacggggata tttcccaagg tgtagcgtca gcccatcatg
      541 caacacagag gcgggcccgg aatcgggacg acagccgggg ccgccggcgc tcctgacgcc
      601 ggctgcgaag tgctgaccgt cggccattcg acgcggccga tcgaggagtt cgtggcgatg
      661 ctcgccgccc accgcgtgac gcagctggtc gacgtgcgaa cggtgccgcg ctcgcgccac
      721 aacccgcagt tcaacggcga tgcagtgccg gcgtcgctcg cggcggcgaa catcggctat
      781 gtgcacgcac ccggtctcgg cggctttcgc cacgcgacgc ccgactcgcc gaattgcggc
      841 tggcgcaacc tgtcgtttcg cggctatgcc gactacatgc agggcgccga gttcgccgaa
      901 aatctcgtcg gcttgatcga gctcgcacgg cacgatcggg tcgtgctgat gtgtgccgaa
      961 gccgtgccgt ggcgctgtca ccgttcgctg atcgccgatg ccctggtcgt gcatggcatc
     1021 gcaacgtgcg agatcgcgag cgcaaggcgc ctgcaggcgc accgcctgac cccgttcgcc
     1081 cgggtccgcg gcctggagat cacctatccg cctgccacgc cgtgagcttt ggcggccccg
     1141 cgcctcctcc caagggaagc ctcttcatga ccagccggca gtcggatgtt cgggatcagt
     1201 cgaagcagcg ccaacgcgcc ctgcaacgtt gggaaaacga gggcggcgcc ggccccggcc
     1261 gcctcgctgc cgacgcagaa ccgggcgaaa tgcatgtcaa cgacccgccg ctcagcaacg
     1321 ccgagctggt gcagctgcag attcgcgtca tcgcgctgga aaacctggtc atcgcactgc
     1381 tctcgcaggc ttcggaccgg cagctcgacc tggcccgcgc catggtcgcc cacatctcgc
     1441 cgcggccgag cttcacagca catcggctga cgatccatgc ggcggcgcag atgatcagcc
     1501 tggtagaacg ggcgggttac ttccgcgctc ccggtgacac cgtcaatgca accacgacga
     1561 tggatccgcc gcttgtcgat gacaggccct gagctcctgc cgttgtcgca agtacgcgct
     1621 ttggcacctc aggcgcgggt gcgaaacggc gcccgataga gccagacgcg gcgaccgtcg
     1681 ccgctgtcga gcacgagctg cggctgcagg gtcgcgatct cgaactcgag gctcgccagc
     1741 cacgcccccg ggtgcagctc gtgcgccgcc ttggcggcgg cgcggcccat gctctcgggg
     1801 cgctggaaga gatagacgag cgcgaagcgc gaccagtcga cgctccagaa gtcaccgcgc
     1861 ctgacgcgcg cgaagcggca gcgcgccgcc ccggcgagcc acaacggcca gctccattcg
     1921 atgccttcga gcctggcgtt cgggtactcg cgccgcagct cgaccagacc ggcgccgagc
     1981 ccgcagccgg cgtcgagaac agccgcgccg ttggcgagcg gaacgccttg cgaaagaccg
     2041 agaagcgaac ccgtcggcgt cggaaagatc ggcgcatcgc gccaggcgcg caacggatag
     2101 acaaaggcga gcatcccgag cgggagcagc catgcccatg cgggc
//
LOCUS       DASVHM010000785         1836 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_561545, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000785 DASVHM010000000
VERSION     DASVHM010000785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_561545"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..434)
                     /locus_tag="VF308_14430"
     CDS             complement(<1..434)
                     /locus_tag="VF308_14430"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEX7437901.1"
                     /translation="MTAPVAARMSVDEAIRSRRSVRGYRPDEVPQQTLLEVFELAQWA
                     PSNCNVQPWTPHVVSGAALQRLRETLVDAGSSGLPPAPDWPADGKFEGVFRERQVDAA
                     VQLYGAMGVDRSDLAGRHAAYVRNHAFFGAPHVVFVFMRHPF"
     gene            complement(431..1354)
                     /locus_tag="VF308_14435"
     CDS             complement(431..1354)
                     /locus_tag="VF308_14435"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEX7437902.1"
                     /translation="MSNPTYFLRRGDWEAVLRKQPGRVLLPSAHAIDREYRVLTALQG
                     SEVPVPRPLHYCADREVLGTPFYLMERLHGRLFHDFATPGLARGERRAMFDAMGATMA
                     AIHRFDFRAAGLADYGRPGNYFARQLSRWSQQWTQFRRGDDDNPDLDRIVAWLAERVP
                     ESETLALCHGDFRIGNVMFHATEPRVVGVLDWELSTLGHPLVDVAFSSQAWRMAPDEN
                     GGLLGLPLEELGIPTEAKYLERYYELAGSRERMTTFHQVFAMFRGAVGSAGVAARGEA
                     GNAFLPDAARVGRMLALAYAQRGAELIRGDR"
     gene            complement(1303..1482)
                     /locus_tag="VF308_14440"
     CDS             complement(1303..1482)
                     /locus_tag="VF308_14440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437903.1"
                     /translation="MNAAAEPAAGRGIDFDTARLEAYLNGLPGSARGELVVERTEGAC
                     RTPRTSCAAATGKPC"
     gene            complement(1479..>1836)
                     /locus_tag="VF308_14445"
     CDS             complement(1479..>1836)
                     /locus_tag="VF308_14445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011299640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7437904.1"
                     /translation="GEPLSKKQAIQFPLVELYAECEMVRNFIFRTAWQMDRQDALEIS
                     DMVSICNFRANRLACDAADQAMQTHGGIGYSRALPFEHIYRHHRRYRITEGSEEVQKR
                     RVAQYLFGFGGKHASA"
BASE COUNT          276 a          637 c          651 g          272 t
ORIGIN      
        1 tcgaaggggt gccgcatgaa gacgaagacg acgtgcggcg cgccgaagaa ggcgtggttg
       61 cgcacatagg cggcgtggcg gccggcgagg tcgctgcggt ccacacccat cgcgccgtag
      121 agctgcaccg ccgcgtcgac ctggcgctcg cggaagacgc cttcgaactt gccgtcggcc
      181 ggccagtcgg gcgccggcgg caggccgctg ctgccggcat cgaccagcgt ctcgcgcaag
      241 cgctgcaacg cagcgcccga tacgacgtgc ggtgtccacg gctgcacgtt gcagttcgac
      301 ggcgcccatt gcgcgagctc gaacacctcg agcagcgtct gctgcggcac ctcgtccggc
      361 cggtagccgc gaaccgaacg ccggctccgg atcgcctcgt cgacgctcat cctcgcggcc
      421 acgggcgcgg tcaccggtca ccccggatca gttcggcgcc gcgctgcgcg taagccaaag
      481 cgagcatgcg accgacgcgc gcggcatccg gcagaaaggc attgccggcc tccccgcggg
      541 cggcgacgcc ggcgctgccg accgcaccgc ggaacatcgc gaacacctgg tggaaggtgg
      601 tcatgcgctc gcgcgagccg gccagctcgt agtaacgctc gaggtatttc gcctcggtgg
      661 ggatgccgag ttcttcgagc ggcaagccga gcaggccgcc gttctcgtcg ggcgccatgc
      721 gccaggcctg gctgctgaat gcgacgtcga cgagcggatg gccgagcgtc gacaactccc
      781 agtcgagcac gccgacgacg cgcggctcgg tggcgtggaa catcacgttg ccgatgcgga
      841 agtcgccgtg gcagagcgcc agtgtttcgc tctcgggcac gcgctcagcg agccaggcga
      901 cgatgcggtc gaggtccggg ttgtcgtcgt cgccgcgccg gaactgcgtc cactgctgcg
      961 accaacggct caactggcgc gcgaaatagt tgccggggcg gccatagtcg gcgaggcccg
     1021 cggcccggaa gtcgaaccga tggatcgccg ccatcgtcgc ccccatcgcg tcgaacatcg
     1081 cgcgccgttc gccgcgcgcg agcccgggcg tggcgaaatc gtggaagagg cgtccgtgca
     1141 ggcgctccat caggtagaac ggcgtgccca gcacttcgcg atcggcgcag tagtgcagcg
     1201 gccgcggtac gggcacttcg ctgccctgca gcgccgtcag cacgcggtat tcgcgatcga
     1261 tcgcgtgcgc cgagggcagc agcacccgcc cgggttgctt cctcagcacg gcttcccagt
     1321 cgccgcggcg caggaagtac gtggggttcg acatgccccc tcggtgcgct cgacgacgag
     1381 ttcgccgcgc gccgagccgg gcagcccgtt caggtaggcc tcgagccgag ccgtgtcgaa
     1441 atcgatgccg cgccccgccg ccggctcggc cgctgcgttc atgccgaggc gtgcttgccg
     1501 ccgaagccga acaggtactg cgccacgcga cgcttctgta cctcttccga accctcggtg
     1561 atgcggtagc ggcggtggtg gcggtagatg tgctcgaacg gcagcgcgcg gctgtagccg
     1621 atgccgccgt gggtctgcat cgcctggtcg gccgcgtcgc aggcgagccg gttcgcccgg
     1681 aagttgcaga tcgacaccat gtcgctgatc tcgagcgcgt cctggcggtc catctgccag
     1741 gcggtccgga agatgaagtt gcgcaccatc tcgcattcgg catagagctc gacgagcggg
     1801 aactggatcg cctgcttctt cgagagcggc tcgccg
//
LOCUS       DASVHM010000786         1527 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1358358, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000786 DASVHM010000000
VERSION     DASVHM010000786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1358358"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VF308_14450"
     CDS             complement(<1..198)
                     /locus_tag="VF308_14450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PsiF family protein"
                     /protein_id="HEX7437905.1"
                     /translation="MKHLMTTLAFSLALLSGAAFATSQKEAPDMMKAGASAPMSKQQT
                     KMGSCNAEAGDKKGDERKAFMK"
     gene            complement(353..>1527)
                     /locus_tag="VF308_14455"
     CDS             complement(353..>1527)
                     /locus_tag="VF308_14455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEX7437906.1"
                     /translation="PDTAHYSERFFAAEAALVGKLQHPNVVQIFDAVPDPVAPYLVME
                     HVAGGTLRPYCRSDQLLSLELVVEIGFKCAMALGYVFRQGLIHRDVKPANLLTVLNDG
                     TITDVKITDFGSVLNLGSDVTQIYRVGSLAYMSPEQLDGGTLDCRADMYSLGAVLYHL
                     IAGRPTFDGQVQSAMMHQIYHAKPASLTGVRAGVTVGLDAVIQRALAKNPAERYADWG
                     EFAQALSALITTQQVPRGQLQGVLDSERFNLLRTLEFFASFGDVELWEVVHRAKWQRF
                     AFGHALYRKGEEGNSFHIIAQGEVEVFRDGKRVAKLGAGTSVGEMAYLAPSPDLKKHS
                     TDVIVTEPATTISFTPETLVQLSPNCRHMFHDSFIRVLVRRLHSAHEALAHPRRIF"
BASE COUNT          253 a          472 c          535 g          267 t
ORIGIN      
        1 cttcatgaag gccttgcgct cgtcgccctt cttgtcgccg gcctcggcat tgcacgagcc
       61 catcttggtc tgctgcttgc tcatcggcgc gctggcgcct gccttcatca tgtcgggcgc
      121 ttccttctgc gaggtcgcga acgcggcgcc cgacagcagg gccagcgaaa acgcaagggt
      181 ggtcatcagg tgtttcatgg ggagtgttcc tttgattgat tgcaaggtgg gcgtcattgc
      241 cgggacggat taacgcactg ccgtgcgtcg tccgcaataa ggaacgccac acgctgtatt
      301 gcggtggaca cactccctcg aaaggaggca gcccggcggt cccggtccgg cgctagaaga
      361 tgcgccgcgg gtgcgccagc gcttcgtgtg cggaatgcaa gcgacgcacc agcacccgga
      421 tgaaggaatc gtggaacatg tggcggcagt tggggctcag ctgcaccagc gtctcgggcg
      481 tgaacgagat cgttgtggcc ggctcggtga cgatcacgtc ggtgctgtgc ttcttcaggt
      541 ccgggctggg cgccaggtag gccatctcgc cgacggacgt gccggcaccg agcttggcga
      601 cccgcttgcc gtcgcgaaag acctcgacct cgccctgcgc gatgatgtga aagctgttgc
      661 cctcctcgcc cttgcgatag agcgcatggc cgaacgcgaa gcgctgccac ttggcgcggt
      721 gcaccacctc ccagagctcg acgtcgccga agctggcgaa gaactcgagc gtgcgcagca
      781 ggttgaagcg ttccgaatcg agcacgccct gcagctggcc gcgcggcacc tgctgggtcg
      841 tgatcagggc ggaaagcgcc tgcgcgaatt cgccccagtc ggcatagcgc tcggcggggt
      901 tcttcgcgag tgcgcgctgg atcacggcgt cgagcccgac ggtcacgccg gcgcgcacgc
      961 cggtgagcga cgccggcttg gcgtggtaga tctgatgcat catcgccgac tgcacctggc
     1021 cgtcgaacgt cggccggccg gcgatcaggt gatagagcac ggcaccgagc gaatacatgt
     1081 cggcgcggca gtcgagcgtg ccgccgtcga gctgctcggg cgacatgtag gcgagcgagc
     1141 cgacccggta gatctgcgtg acgtcggagc cgaggttcag cacgctgccg aaatcggtga
     1201 tcttgacgtc ggtgatggtg ccgtcgttga gcaccgtgag cagattcgcg ggcttcacgt
     1261 cgcgatggat caggccctgt cgaaagacat agccgagtgc catcgcgcac ttgaagccga
     1321 tttcgacgac gagttcgagc gagagcagct ggtcggagcg gcagtagggc cgcagcgtgc
     1381 cgccggcgac gtgttccatc accaggtagg gcgccaccgg gtcgggcacc gcatcgaaga
     1441 tctgcaccac gttcgggtgc tgcagcttgc cgacgagcgc cgcttcggcg gcgaagaaac
     1501 gctcggagta gtgggcggtg tccggcg
//
LOCUS       DASVHM010000787         5217 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_489238, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000787 DASVHM010000000
VERSION     DASVHM010000787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5217
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_489238"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            216..3062
                     /locus_tag="VF308_14460"
     CDS             216..3062
                     /locus_tag="VF308_14460"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding and (Fe-S)-binding domain-containing
                     protein"
                     /protein_id="HEX7437907.1"
                     /translation="MPPAPYAELRRQVGAFVPAARLITDPLRLLTWGTDASFYRLVPK
                     LVVVTETEDEVRRLLECCARLKAPVTFRAAGTSLSGQALSDSVLVLLGDGWRKVQVAA
                     DARSITLQPGVIGAVANRKLAPLGRKIGPDPASIDAAMIGGIAANNASGMCCGTAQNS
                     YHTLSGLRVVLADGTVLDTRDPASRAAFATQRPELAQGLTELGRETRENETLAGRIRH
                     KFRLKNTTGYSLNALVDFTDPVDILAHLMIGSEGTLGFISEITYLTVEEHPHKASSLI
                     LFDRLETACSAVTRLKRTPVAAVELLDRASLRSVQDKPGMPESLRALPPDGAALLVET
                     RAATAAALSVKIDAIAGQLESIALATPLRFTTDPAESAALWNVRKGMFPAIGAMRPTG
                     TTVIIEDVAFPVERLAEATLDLQRLLQRHGYTEAIIYGHALEGNLHFVFTQDFSNAAE
                     VERYSRFMDALCEMVVHNYDGSLKAEHGTGRNMAPFVEMEWGAQAFAVMRRIKALFDP
                     QGLLNPGVILNSDPKSHLKNLKPLPAADVLVDKCIECGFCEPKCPSRGLTLSPRQRIV
                     GWREIARLDAAGESPAQAKQLKQLYDYQGIETCAACGLCATACPVGIETGLLIKALRG
                     RRAGPLAGKVAGVAARQYAGVTAGVRLALGAADLLHGTVGTRVMRGMLDGLRRASGGR
                     LAKWSPALPRPVRFVARSSPLGRAERIVYFASCAARNMGPQRGHDGVETLPVVAERLF
                     QRAGFDVVYPAGLAGLCCGQPFESKGLMDAANLKSTELEAALRDASEGGRWPIVFDTS
                     PCTYRMQRHLAGRLDLQDSIEFVHDLVLPRITTRPQPGPVAVHPVCSVRKMGTVDKLM
                     AIARHCSAEVVTSDEVQCCGFAGDRGFIRPELNEHALRHLKASLPAHCASGYSTSRTC
                     EIGLSEQAGFPYQSILYLVESCSGAPSKVREVDR"
     gene            complement(3036..3737)
                     /locus_tag="VF308_14465"
     CDS             complement(3036..3737)
                     /locus_tag="VF308_14465"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEX7437908.1"
                     /translation="MGTASPLLALALATLLVLPGWSRPASRRWAIVFLATLALFLGLR
                     ALPLLLPGERLIGDHWNWSGQLLGLTGVLWIASMFARRAGLSWREMGFTWIQRPGSVG
                     PALWVSAGALSLNALAMTLGSFRLTGVSLETWVYQATLPGLVEEAVFRGVLLALLDRA
                     FIPGKDLFGAPIGWGGVTVTLVFMALHGVSAGTVLGVLPAALLYLWLRARTGGLVAPV
                     VVHNLWNLSVYFAHL"
     gene            complement(3748..>5217)
                     /gene="hemG"
                     /locus_tag="VF308_14470"
     CDS             complement(3748..>5217)
                     /gene="hemG"
                     /locus_tag="VF308_14470"
                     /EC_number="1.3.3.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004729 - oxygen-dependent
                     protoporphyrinogen oxidase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HEX7437909.1"
                     /translation="GGLGKRGGVVSQERRDDLSADAGMRTGSQPALDAIVVGAGISGL
                     VAAHRLKRAGFAVGVLDAGAKPGGVIGTVARDGCRFERGPNSALDSTPLIGELVDDLG
                     LSAALRFASAASAKRYVVRGGVLTALPTSPGAFLSSRLFSPAAKLALLREPFLRRAAP
                     DAEESIAAFVRRRLGAEFLDYAIDPFVAGIFAGDPEEISVRAAFPKLHALEQRWGSLI
                     RGQVFGARERRRHQETAKNSAASFSFAHGMQVLTDALAAAVGDLALHTCATRLERAAD
                     GSFTVRAERHGEPIEWRARAVVLATPADRSAALLRGHAPDAAAALESITYAPVATVAS
                     AYPASTIAHPLDGFGCLVPRKERRRILGVLFSSTMFANRAPAGTVLLTTFVGGQRNPE
                     LAGLAEEDIAALAHAEHGTLLGARDAPLFQAVTRWPRAIPQYTLGHLARVARAEAASG
                     VLPGLFFCASWKGGVSVGDCIGNGHLEADAAAAYLRARP"
BASE COUNT          868 a         1866 c         1761 g          722 t
ORIGIN      
        1 tcgtctccat ggtcgatatc ttgattcgac gggaacagac cgccgcctcg tggttttcac
       61 ctatgcattt ctggcaagcg agaaccttat tcgaggcaga ccgcatcgtg gcgtcggttt
      121 gcgccgaagc cccgagccgg cctgatctgc atcaagacaa tcgcggcgcg cccgcttaga
      181 gtggccgagc ttcccgcaag cgcgtcgcgc ccttcatgcc gcctgccccc tacgctgaac
      241 tgcggcgcca ggtcggcgcg ttcgttccgg ccgcgcgcct gatcaccgat ccactgcgcc
      301 tgctcacctg gggcacggac gccagtttct atcggctcgt gcccaagctc gtggtggtga
      361 ccgagaccga agacgaggtc cggcgcctgc tcgaatgctg cgcgcgcctg aaggcgccgg
      421 tgaccttccg cgccgccggc accagcctct ccggccaggc cctcagcgac tccgtgctgg
      481 tgctgctcgg cgacggttgg cgcaaggtgc aggtcgctgc cgacgcgcgc tcgatcacgt
      541 tgcaacccgg ggtcatcggc gcggtggcca accgcaagct cgcgccgctc ggccgcaaga
      601 tcggccccga cccggcctcg atcgacgccg cgatgatcgg cggcatcgcc gccaacaacg
      661 ccagcggcat gtgctgcggc accgcgcaga acagctacca caccttgagc ggcctgcgcg
      721 tggtgctcgc cgacgggacc gtgctcgaca cccgcgaccc cgcgagccgg gcggccttcg
      781 cgacgcaacg ccccgagctg gcacaaggcc tcaccgaact cgggcgcgag acgcgcgaaa
      841 acgagaccct ggccgggcgc atccgccaca agttccggct caagaacacc accggctaca
      901 gcctcaatgc gctggtcgat ttcaccgatc cggtggacat cctggcgcac ctgatgatcg
      961 gctcggaagg cacgctcggc ttcatcagcg agatcaccta cctcacggtg gaagagcatc
     1021 cccacaaggc gagttcgctg atcctgttcg accgcctcga gaccgcctgc agcgccgtga
     1081 cacggctcaa gcgaacgccg gtggcggcgg tcgaactgct cgaccgtgcg tcgctgcgct
     1141 cggtgcagga caagccgggc atgccggagt cgctgcgcgc cctgccgccg gacggcgccg
     1201 cgctgctggt cgagacccgt gccgccaccg cggcggcatt gagcgtcaag atcgatgcga
     1261 tcgccgggca gctcgaatcg atcgcgctgg ccacgccgct gcgtttcacc accgaccccg
     1321 ccgaatcggc ggccctttgg aacgtgcgca aaggcatgtt cccggccatc ggggcgatgc
     1381 gcccgaccgg caccaccgtg atcatcgagg acgtggcgtt tccggtcgag cgcctggccg
     1441 aagccacgct cgacctgcag cggctgctgc agcggcacgg ctacaccgag gccatcatct
     1501 acggccacgc gctcgaaggc aatctgcact tcgtgttcac gcaggacttt agcaacgctg
     1561 ccgaggtgga gcgctacagc cgcttcatgg acgcgttgtg cgagatggtg gtgcacaact
     1621 acgacggctc gctgaaggcc gaacacggca ccggccgcaa catggcgccg ttcgtcgaga
     1681 tggaatgggg cgcacaggcg tttgcggtga tgcgccgcat caaggcgctg ttcgacccgc
     1741 agggcctgct gaacccaggc gtgatcctca acagcgaccc gaagtcgcac ctgaagaacc
     1801 tgaagccgct gcccgccgcc gacgtgctgg tcgacaagtg catcgagtgc gggttctgcg
     1861 agccgaagtg cccgtcgcgc ggcctcaccc tgtcgccgcg ccagcgcatc gtcggctggc
     1921 gcgagatcgc gcggcttgac gccgcgggcg agtcgccggc gcaggcgaaa caactgaaac
     1981 agctctacga ctaccagggc atcgagacct gcgccgcctg cggcttgtgc gcgacggcct
     2041 gcccggtggg catcgaaacg gggctgctga tcaaggcgct gcgcggtcgg cgcgccggcc
     2101 cgttggccgg aaaagtggcc ggcgtcgcgg cacgccaata cgccggagtg acagccggtg
     2161 tgcggctcgc actgggcgcc gccgacctgc tgcatggaac ggtcggcacc cgggtcatga
     2221 ggggcatgct cgacggcctg cgcagggcct cgggcggacg cctggcgaaa tggtcgccgg
     2281 cgctgccccg gccggtgcgc ttcgtggcgc ggtcgtctcc actcgggcgc gccgagcgca
     2341 tcgtctactt tgccagctgc gcggcgcgca acatggggcc gcagcgcggc cacgacggcg
     2401 tcgagacgct ccctgtcgtg gccgagcggc tcttccagcg tgccggcttc gatgtggtct
     2461 acccggcggg attggccggc ctgtgctgcg ggcagccgtt cgaaagcaag ggcctgatgg
     2521 acgcggcgaa cctgaagtcg accgagctcg aagccgcact gcgcgatgcg agcgaaggtg
     2581 ggcgctggcc aatcgtgttc gacaccagcc cctgcaccta ccgcatgcag cgccatctgg
     2641 ccggccgcct ggatctgcag gacagcatcg agttcgtgca cgacctggtg ttgccacgca
     2701 tcacgacccg cccgcagccc gggcccgtgg cagtgcaccc ggtgtgcagc gttcgcaaga
     2761 tgggcactgt cgacaagctg atggcgatcg cgcgccactg cagcgccgag gtggtgacga
     2821 gcgacgaggt gcagtgctgc ggcttcgccg gcgaccgcgg tttcatccgc cccgagttga
     2881 acgaacacgc gttgcgccac ctgaaggcct cgctgcccgc gcactgtgcg agcggttatt
     2941 cgaccagccg cacctgcgag atcggcctgt ccgagcaggc cgggtttccc taccagtcga
     3001 tcctgtacct ggtcgagagt tgttccggcg caccgtcaaa ggtgcgcgaa gtagaccgat
     3061 aggttccaca ggttgtgcac gacgaccggt gccaccaggc cgccggtgcg cgcgcgcagc
     3121 cagaggtaca gcagggcggc cggcaacacg ccgagaaccg tgcctgcgct gacaccatgc
     3181 aaggccatga agaccagcgt gaccgtcacg ccgccccagc cgatcggcgc gccgaacagg
     3241 tccttgccag ggatgaacgc acggtcgagg agcgccaaca gcacaccgcg gaacacggct
     3301 tcctccacca gccccggcag cgtggcctgg tagacccagg tctcgagcga cacgccggtc
     3361 agtcgaaaac tgccgagggt catcgccagc gcgttgagcg acagcgctcc ggccgatacc
     3421 cacagcgccg ggccgaccga cccgggccgc tggatccacg tgaaccccat ctcgcgccac
     3481 gacaggccgg cccgccgcgc gaacatcgat gcgatccata gcactccggt caacccgagg
     3541 agttgaccgc tccagttcca gtgatcgccg atcaggcgtt caccgggcag caggagcggc
     3601 aacgcgcgca agcccagaaa cagtgccagc gtcgccagga aaacgatcgc ccagcggcgc
     3661 gacgccggcc tggaccaccc gggcagcacg agcagcgtcg cgagggccag tgcaagcagc
     3721 ggcgacgcgg ttcccatcgg actcgggcta tggccgcgcg cgcaggtagg cggccgcagc
     3781 gtccgcctcg aggtggccgt tcccgatgca gtcgccgacc gacacaccgc ccttccagct
     3841 ggcgcagaag aagagccccg gcaggacacc ggacgcggcc tcggcgcgcg ccacccgagc
     3901 aaggtgcccg agcgtgtatt gcgggatcgc gcgcggccag cgcgtgacgg cctgaaacaa
     3961 tggcgcatcg cgcgcgccca atagcgtgcc gtgttcggcg tgcgccagcg cggcgatgtc
     4021 ttcttcggcg aggccggcca gttcggggtt gcgctgaccg ccgacaaagg tcgtcagcag
     4081 caccgtgcct gcaggcgccc ggttcgcgaa catcgtgctc gagaacagca cgccgaggat
     4141 gcggcgccgc tccttgcgcg gcacgaggca accgaaccca tcgagcgggt gcgcgatggt
     4201 cgaagccgga taggccgatg ccactgtggc cacgggcgcg taggtgatcg attcgagcgc
     4261 cgccgcggcg tcgggcgcat ggccgcgcag aagcgccgcc gaccggtcgg ccggcgtcgc
     4321 cagcaccacg gcgcgcgcgc gccattcgat cggctcgccg tgccgctcgg cccgcaccgt
     4381 gaagctgcca tcggcagcgc gctccaaccg cgtggcgcag gtgtgcaagg cgaggtcgcc
     4441 gaccgcagcc gccaacgcgt cggtcagcac ctgcatgccg tgggcaaacg aaaagctcgc
     4501 ggcgctgttt ttcgccgtct cctggtggcg ccggcgctcg cgcgcgccga agacctggcc
     4561 gcgaatcagg ctgccccagc gctgctcgag cgcgtgcagc ttcgggaagg cagcgcgcac
     4621 cgagatctct tcggggtcac cggcaaagat tccggccacg aacggatcga tcgcgtagtc
     4681 gagaaactcg gccccgagac ggcgtcgcac gaaggccgcg atcgattcct cggcgtcggg
     4741 cgcggcgcgg cgcaggaagg gctcgcgcaa cagcgccagc ttcgcggccg gagagaacag
     4801 acggctcgac aggaacgcgc ccggcgaggt cggcaaggcg gtcaatacgc ccccacgcac
     4861 cacgtagcgt ttcgccgagg ctgccgaggc gaaacgcaag gcagcgctca ggccgagatc
     4921 atcgaccagc tcgccgatca gcggcgttga atcgagcgcg ctgttcggcc cgcgttcgaa
     4981 ccggcaaccg tcgcgcgcca cggtaccgat cactccgccc ggtttcgcgc cggcgtcgag
     5041 cacaccgacc gcgaagccgg cgcgcttcag gcgatgcgcg gccacgagac cggatatgcc
     5101 ggcgcccacg acgatcgcgt cgagcgcggg ctgcgaaccc gtacgcatgc cggcatcggc
     5161 gctcaagtcg tcacgtcgtt cctggctgac cacgccgcct ctctttccca acccccc
//
LOCUS       DASVHM010000788         5331 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_129771, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000788 DASVHM010000000
VERSION     DASVHM010000788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5331
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129771"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..887)
                     /locus_tag="VF308_14475"
     CDS             complement(<1..887)
                     /locus_tag="VF308_14475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437910.1"
                     /translation="MLRLTELRLPLDHPGDALRAAVLARLGVADTRLQRFTVHRRSFD
                     ARKKSAIVLIYTVDCEIAGDEAALLEAHRDDPHVRPAPDMRYTFVARLPADYQATDPK
                     RPIVVGFGPCGIFAALVLAQIGLRPIVLERGKAVRERTKDTWGLWRKGILDPESNVQF
                     GEGGAGTFSDGKLWSQISDPRHLTRKVLDEFVKAGAPEEILWIGKPHIGTFRLVGVVE
                     KMRGEIEALGGEIRFGHRLIDLAVDAGRLRGVRVATAAHPEGEEIEAARVVLAPGHSA
                     RDTFEMLQARGVHLEAKAFS"
     gene            complement(913..1950)
                     /locus_tag="VF308_14480"
     CDS             complement(913..1950)
                     /locus_tag="VF308_14480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEX7437911.1"
                     /translation="MDWADPARRRAFEAWLATVAPRHGLLPMSLRSASSDASFRRYFR
                     IDAESGASFIVMDAAPPREDVRPFVHVAALLARCGLNAPRVLEQEPEQGFLLLADFGS
                     RLYLDALNEALAHDDRKGADALMRDAILALVRWQGCADAATLPPYDDALLRRELALFP
                     EWCVGRELAVTWNDSEQATWHATCDLLVASALAQPKVAVHRDFMPRNLMVCEPNPGIL
                     DFQDAVLGPISYDMASLLRDAFISWDEEREIDWAVRYWEAARKAGLPVPDDFGEFWRA
                     LEWMGLQRHLKVLGIFCRLKHRDAKPGYSADLPRFFAYAHKVAARYNALRPFSRLLEP
                     LMGASRLEVFY"
     gene            2147..4450
                     /gene="lptD"
                     /locus_tag="VF308_14485"
     CDS             2147..4450
                     /gene="lptD"
                     /locus_tag="VF308_14485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0010033 - response to organic substance
                     [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HEX7437912.1"
                     /translation="MEWALLAAIVSGEGAFAQTVAPEEGIVLRSSPALQPAPRGDAAK
                     ALPIILQAREVRGRPDLETVAEGDAEFRRGNLVIRADRLSYDQADDLARALGHVRISR
                     DGNVYSGPELQLKVQRFEGFFQSPTYFLGRTGAGGSAARIDFLDEQRAVATDATYTSC
                     GIDGSGAPVWVLSAGSVKLDLEANEGIARNAVLRFYGVPILAAPSLSFPLSEARKSGW
                     LPPSIALDSTSGLQVAIPYYWNVAPNRDATFTPSLSARRGAGLDTELRYLEASYHGEA
                     DLNLLPYDGLARRSRYSLRATHDSSFERDALLKVRIHRVSDDDYWKDFPRDLASVTPR
                     LLGSDLQVSRPFGDWTSYARVQGWQVLQTADPTSRIEAPYERVPQIGSRTAGRYGPDL
                     EVGFEGEVNRFVTPDNNASGPRSNGVRLHALGNISRPVVTPGWTFVPKLAFNAAAYSL
                     DQPVATVRGNASRVIPTLSVDSAWTFERDATWFGRAVRQTLEPRLLYVNTPYVQQSDL
                     PNFDAAAKDFNYESVFSDNLFSGVDRVSDAHQLTAGVTTRFLDPDTGAEALRLGIAQR
                     YLFRDQRVTPDLLPSTKRFSDVLLLGSTTLVRNWNLDASVQYSPDNQQAERSIVGVRY
                     SPGPFRTVSATYRLTRGLTEQMEIGWQWPVYGRAPSESGARGGGACQGSLYAVGRANY
                     SMRDSRIIDSIFGFEYDAGCWIGRIVAERLSTGRSASTTRLLFQLELVGLSKLGSYPL
                     QVLKDNIPGYRMLREDRAAPLPFNPYD"
     gene            4443..>5331
                     /locus_tag="VF308_14490"
     CDS             4443..>5331
                     /locus_tag="VF308_14490"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX7437913.1"
                     /translation="MTETLRPFRRFACAAVLALLASGLGAQPSAAQAAVRTGDYIVVV
                     VNQELVTAGELQQRLESVRADAARSKTPLPSPQVLRQQVLDSLIDERVQVTNARDSGV
                     KVDEGELDRAVGNVALQNQLTLPQLRAKLRQEGIDYVKFRNNVRDQILIERVREREVM
                     ERIKVSDAEIDAFLDERRAAAGLTAQLNIAQILVLVPEGASEAVVAQRRARAEAARER
                     VRAGESFEAVARELSEDGNRALGGVIGLRPQDRLPDVFVTAVRQLQTGEVTPQLLRTG
                     AGFHLLKLVERRDGASFTIQ"
BASE COUNT          822 a         1838 c         1846 g          825 t
ORIGIN      
        1 gagaacgcct tggcttcgag gtgcacgccg cgcgcctgca gcatctcgaa ggtgtcgcgt
       61 gcactgtgcc cgggggccag cacgacgcgc gcggcctcga tctcttcgcc ctcgggatgt
      121 gccgcggtcg cgaccctcac gccgcgcagg cgtccggcat cgaccgccaa gtcgatgagg
      181 cggtgcccga agcggatctc tccgccgagc gcctcgatct cgccgcgcat cttctcgacg
      241 acgccgacga gccggaacgt gccgatgtgg ggtttgccga tccagaggat ctcctcgggc
      301 gccccggcct tgacgaattc gtcgagcacc tttcgcgtca ggtggcgcgg gtcgctgatc
      361 tggctccaga gcttgccatc ggaaaacgtg cccgcgccgc cttcgccgaa ctggacgttc
      421 gactccggat cgaggatgcc cttgcgccac agaccccagg tgtccttcgt gcgctcgcgc
      481 accgccttgc cgcgctcgag cacgatcggg cgcaggccaa tctgggcgag cacgagggcg
      541 gcgaagattc cgcacgggcc gaagccgacg acgatcgggc gcttcgggtc cgtcgcttga
      601 tagtcggcgg ggaggcgggc gacgaacgtg tagcgcatgt cgggtgcggg ccggacgtgc
      661 gggtcgtcgc gatgggcttc gaggagcgcg gcctcgtcgc ccgcgatttc gcagtcgacc
      721 gtgtagatca gcacgatcgc gctcttcttg cgcgcgtcga aactgcgcct gtggacggtg
      781 aagcgctgga gacgggtgtc ggcgacgccg aggcgcgcga ggacggctgc gcgcaaggcg
      841 tcccccggat ggtccagcgg cagtctcagt tcggtgagtc gcagcatggc cggtgcagag
      901 cgcgcacgcg gctcagtaga acacttcgag ccggctcgcg cccatcagcg gttcgagcag
      961 gcgcgagaac ggccgcagcg cgttgtagcg tgccgccacc ttgtgcgcgt aggcgaagaa
     1021 gcgcggcagg tcggcgctgt agccgggctt ggcatcgcgg tgcttgagcc ggcagaagat
     1081 gccgagcacc ttgagatggc gctgcagtcc catccattcg agggcgcgcc agaattcgcc
     1141 gaagtcgtcg ggcaccggca agccggcctt gcgcgccgcc tcccagtagc gcaccgccca
     1201 gtcgatctcg cgctcctcgt cccacgagat gaatgcgtcg cgcagcagcg acgccatgtc
     1261 gtagctgatc gggccgagca ccgcgtcctg gaaatcgagg atgcccggat tcggctcgca
     1321 caccatcagg ttgcgcggca tgaagtcgcg gtgcaccgcg actttcggct gtgccagggc
     1381 gctggccacg agcagatcgc aggtggcatg ccaggtcgcc tgctcgctgt cgttccaagt
     1441 cactgcgagc tcgcggccga cgcaccactc gggaaagagc gctagctcgc ggcgcagcag
     1501 tgcgtcgtcg taaggcggta aggtggcggc gtcggcgcag ccctgccagc gcacgagggc
     1561 caggatcgca tcgcgcatca gcgcgtcggc acccttgcgg tcgtcgtgcg ccagcgcttc
     1621 gttcagcgcg tcgagataga gacggctgcc gaagtcggcg agcagcagga agccctgctc
     1681 gggctcctgc tcgagcacgc gcggcgcgtt gaggccgcag cgcgcgagca gtgccgcgac
     1741 gtggacgaac ggccgcacgt cttcgcgcgg cggcgcagcg tccatcacga tgaagctcgc
     1801 gccgctctcg gcatcgatgc ggaaatagcg ccgaaagctc gcgtcgctcg acgcgctgcg
     1861 caatgacatg ggtagcaggc cgtggcgcgg cgccacggtc gcgagccacg cctcgaaggc
     1921 ccggcggcgg gccggatcgg cccagtcgat gacggaagga taggttgcga tgacgggacc
     1981 ccgcgagtgg cgcgacacgg gcgcgtgcgg acgggggtcc ggctcgggtg cctcgtggat
     2041 aatcgattct acaaatcgca ccgtctccgc caggcctcag tcgctcttgc tgcatcatcc
     2101 tcgaatcctt gcggcaaccg atcgttcgcg tgcacgaggc gtcgctgtgg agtgggcgtt
     2161 gctggccgcg atcgtctcgg gcgagggggc ctttgcgcag acggtggcgc ccgaagaggg
     2221 cattgtgctg cgttcgtcgc ccgcccttca gccggcgccg cgcggcgatg cggccaaggc
     2281 actgccgatc atcctgcagg cgcgcgaggt gcgcgggcgc ccggatctcg aaacggtggc
     2341 cgagggcgac gccgagttcc ggcgcggcaa cctggtgatc cgtgccgatc gtctcagcta
     2401 cgaccaggcc gacgacctgg cccgcgcgct cggccatgtg cgcatcagtc gcgacggcaa
     2461 tgtctacagc gggcccgaac tgcagctcaa ggtgcagcgt ttcgaaggct tcttccagag
     2521 cccgacctat ttcctcggcc gcaccggcgc aggcggcagc gccgcgcgca tcgattttct
     2581 cgacgagcag cgtgccgtcg cgaccgatgc cacctacacc agttgcggaa tcgacggctc
     2641 cggcgcgccg gtctgggtcc tttcggccgg cagcgtcaag ctcgacctcg aagccaacga
     2701 aggcatcgcc cgcaacgcgg tgctgcgctt ctacggcgtg ccgatcctgg cggcgccctc
     2761 gctcagcttt cccctcagcg aggcgcgcaa gtcaggctgg ctgccgccga gcatcgcgct
     2821 cgacagcacg agcgggctgc aggtcgccat cccgtactac tggaacgtcg cgccgaaccg
     2881 cgacgcgacc ttcacgcctt cgctgagtgc gcggcgcggc gccggactcg acaccgaact
     2941 gcgctacctc gaagcgagct accacggcga ggccgacctg aacctgctgc cctacgatgg
     3001 gctggcgcgg cggtcgcgct attcgctgcg ggccactcac gacagcagct tcgagcgcga
     3061 cgcgctcctg aaagtgcgca ttcaccgggt ctcggacgac gactactgga aggactttcc
     3121 gcgcgacctc gccagcgtga cgccgcgctt gctcggttcg gatctgcagg tcagccggcc
     3181 gttcggcgac tggacgagct atgcgcgcgt gcagggttgg caggtgctgc agacggcgga
     3241 tccgacgagc cgcatcgagg cgccgtacga gcgcgtgccg cagatcggat cgcgcaccgc
     3301 cggccgctac ggtccggacc tggaggtggg attcgagggc gaggtcaatc gtttcgtcac
     3361 gcccgacaac aacgccagcg ggccccggtc gaacggcgtg cgcctgcatg cgctcggcaa
     3421 catcagccgg cccgtggtga ctcccggctg gaccttcgtg ccgaagctgg ccttcaacgc
     3481 cgcggcgtat tcgctcgacc agccggtcgc gaccgtgcgc ggcaacgcct cgcgggtgat
     3541 cccgacgctc agcgtcgaca gcgcctggac cttcgagcgc gacgcgacct ggttcggccg
     3601 cgcggtgcgc cagacgttgg agccgcgcct gctgtacgtc aacacgccgt atgtgcagca
     3661 aagcgatctg cccaatttcg acgcggcggc gaaggatttc aactacgaat cggtcttcag
     3721 cgacaacctg ttctccggcg tcgatcgcgt ctccgacgcg caccagctca ccgccggcgt
     3781 cacgacccga ttcctcgacc cggacaccgg tgccgaggcg ctgcggctcg gcatcgcgca
     3841 gcgctatctc tttcgggacc agcgtgtgac gcccgacctg ctgccctcga ccaagcgctt
     3901 ctccgatgtg ctgctgctcg gctcgacgac gctggtgcgc aactggaacc tggacgcctc
     3961 ggtgcagtac agccccgaca accagcaggc cgaacgttcg atcgtcggtg tgcgctattc
     4021 gccgggtccg tttcgcacgg tgagcgcgac ctatcggctc acccgcggac tcaccgagca
     4081 gatggagatc ggctggcagt ggccggtcta cggccgcgcg ccgagcgagt cgggagcacg
     4141 cggcggcggc gcctgccagg gcagcctcta tgcggtcgga cgggccaact acagcatgcg
     4201 cgacagccgc atcatcgatt cgatcttcgg gttcgagtac gacgccggat gctggatcgg
     4261 gcgcatcgtc gcggagcggc tctcgaccgg acgcagcgcc tcgaccacga ggctcctgtt
     4321 ccagctcgaa ctggtcgggc tgtcgaagct gggctcctat ccgctgcagg tcttgaagga
     4381 caatatcccc ggctatcgga tgcttcgcga agaccgcgcc gcgccgctgc cgttcaaccc
     4441 ctatgactga aacactccga cctttccgcc gcttcgcctg cgcggccgtg ctcgccctgc
     4501 tggcgtccgg gctcggtgct cagccgtccg cggcgcaagc ggcagtgcgc accggcgact
     4561 acatcgtcgt ggtcgtcaac caggagctcg tcacggccgg cgagctgcag caacggctcg
     4621 agagcgtgcg cgccgacgcc gcccgcagca agacgccgct gccgtcgccg caggtgctgc
     4681 gccagcaggt gctcgacagc ctgatcgatg agcgcgtgca ggtcacgaat gcgcgcgaca
     4741 gcggcgtcaa ggtcgacgaa ggcgagctcg atcgcgcggt cggcaacgtc gcgctgcaga
     4801 accagttgac gctgccgcag ctgcgcgcga agctgcgcca ggaaggtatc gactacgtca
     4861 agtttcgcaa caacgtgcgc gaccagatcc tgatcgagcg cgtgcgcgag cgcgaagtga
     4921 tggagcgcat caaggtcagc gacgccgaga tcgacgcgtt tctcgatgaa cgccgcgccg
     4981 ccgcgggcct caccgctcag ctgaacatcg cgcagatcct tgtcctggtg cccgagggcg
     5041 cgagcgaggc ggtggtcgca cagcggcgcg cccgtgccga ggcggcacgc gagcgcgtgc
     5101 gcgccggcga gagcttcgag gccgtggcgc gcgagctgtc cgaggatggc aatcgggccc
     5161 tgggcggcgt gatcggcttg cgcccgcagg accgcctgcc cgatgtcttc gtcaccgcgg
     5221 tgcgccagct ccagaccggc gaggtcacgc cgcaactgct gcgcactggg gccggctttc
     5281 atctcctcaa gctcgtcgag cggcgcgacg gcgccagctt cacgatccag c
//
LOCUS       DASVHM010000789         2523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_55945, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000789 DASVHM010000000
VERSION     DASVHM010000789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2523
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55945"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(192..1892)
                     /locus_tag="VF308_14495"
     CDS             complement(192..1892)
                     /locus_tag="VF308_14495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7437914.1"
                     /translation="MVTTAVPVGTKVARPMTREEKKVIFASSLGTVFEWYDFYLYGSL
                     AAIIAKQFFAALDPTAAFIAALMAFAAGFLVRPFGALVFGRLGDMIGRKYTFLVTIMI
                     MGMSTFIVGLLPGYASIGIAAPIILVGLRLLQGLALGGEYGGAATYVAEHAPHGKRGA
                     YTSWIQTTATLGLFLSLIIIIGCKEILGDAAFNDWGWRIPFWMSFFLLIISVWIRLSL
                     NETPAFKKMKEEGKTSKAPLSESFGQWSNGKIVLLALLGLTAGQGVVWYTGQFYALFF
                     LTAQIKVEPTTAQLMIGASLLLGTPFFIVFGTLSDRIGRKPIILAGCLIAALTFFPLF
                     KALTEAANPDLAVAQAKNKVVVTADPAQCSFQGSPIAREIDFKTSCDIAKRYLAQSSV
                     SYESVDAPKGTPATVTIGDKTITPPSATVANQKFDADSAAKIAAFKKDMGADLVAAGY
                     PAKAKPIAFMSGQWWKVVAILWVLVIYVTMVYGPIAAMLVELFPTRIRYTSMSLPYHI
                     GNGWFGGLLPTTAFAIVASTGNMYNGLWYPIIIATMTFIIGTIFIRETKDVDIYARDR
                     "
     gene            complement(2044..>2523)
                     /locus_tag="VF308_14500"
     CDS             complement(2044..>2523)
                     /locus_tag="VF308_14500"
                     /inference="COORDINATES: protein motif:HMM:NF013488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEX7437915.1"
                     /translation="EIEPKRAWTFRQVHWLAHRAGIPLDTPERHPFSPIALSRLAWAT
                     APIDATPSRFVCETILRHVWRGGADADDAARHAELVAQLAPRIDPVSDAKQRLRDATD
                     AALARGVFGVPTLGIGDKLFWGFDALDMAAAFLRGDSWFDAPHWQREGAPRPGVKRA"
BASE COUNT          435 a          794 c          890 g          404 t
ORIGIN      
        1 tgccgaaagc ggtcttcgtc gtcgccgagc tgccgaggaa cgccatgggc aaggtgcaga
       61 agaacctgct gcgcgagcag catgcggcgc tctttgcctg agggtcacct cggcgcgatc
      121 gtcggcgcgg gccagccatg aaaaagggcc ggcgctcgcg cggccggccc tggtgatgcg
      181 cgacgacttc gtcagcggtc ccgcgcgtag atatcgacgt ccttggtctc gcggatgaag
      241 atcgtgccga tgatgaaggt catcgtcgcg atgatgatcg ggtaccacag gccgttgtac
      301 atgttgccgg tggaagcgac gatcgcgaac gccgtcgtcg gcagcaggcc gccgaaccag
      361 ccgttgccga tgtggtacgg caggctcatc gacgtgtagc ggatccgggt cgggaagagc
      421 tcgaccagca tcgccgcgat cggcccgtag accatcgtca cgtagatcac gagcacccac
      481 aggatggcga cgaccttcca ccattgcccg ctcatgaacg cgatcggctt ggccttggcc
      541 ggatagcctg ccgcgacgag gtcggcgccc atgtccttct tgaaggcggc gatcttggcg
      601 gcgctgtcgg cgtcgaactt ctggttggcg accgtcgccg aaggcggcgt gatcgtcttg
      661 tcgccgatcg tcacggtggc cggcgtgccc ttcggcgcgt cgacgctttc gtagctgacg
      721 gagctctgcg ccaggtagcg cttggcgatg tcgcacgagg tcttgaaatc gatctcgcgc
      781 gcgatcgggc tgccctggaa cgagcactgc gccgggtcgg cggtgaccac gaccttgttc
      841 ttcgcctggg cgaccgcgag gtcggggttg gccgcctcgg tgagcgcctt gaagagcggg
      901 aagaaagtca gcgcagcgat caggcagccg gccaggatga tcggcttcct gccgatccgg
      961 tccgagagcg tgccgaagac gatgaagaac ggcgtgccga ggagaagcga cgcgccgatc
     1021 atcagctgcg ccgtcgtggg ttcgaccttg atctgcgcgg tcaggaaaaa gagcgcatag
     1081 aactggcccg tgtaccagac cacgccctgg ccggcggtca ggccgagcag cgcgagcagg
     1141 acgatcttgc cgttgctcca ctggccgaag gattccgaca gcggcgcctt cgacgtcttg
     1201 ccttcctcct tcatcttctt gaaggccggc gtctcgttca ggctgagccg gatccagacc
     1261 gagatgatca gcaggaagaa cgacatccag aacggaatgc gccagcccca gtcgttgaac
     1321 gccgcgtcgc ccaggatttc cttgcagccg atgatgatga tcagcgagag gaacaggccg
     1381 agcgtggccg tcgtctggat ccacgaggtg tacgcgccgc gcttgccgtg cggcgcgtgt
     1441 tcggcgacgt aggtcgcggc accgccgtac tcgccgccga gggccaggcc ctggagcagg
     1501 cgcaggccga cgaggatgat cggcgcggcg atgccgatcg aggcgtagcc gggcagcagg
     1561 ccgacgatga acgtcgacat gcccatgatc atgatcgtca ccaggaaggt gtatttccga
     1621 ccgatcatgt cgccgaggcg gccgaagacg agcgcgccga agggccggac caggaagccg
     1681 gcggcgaacg ccatcagcgc ggcgatgaac gccgccgtgg gatcgagggc ggcgaagaac
     1741 tgcttggcga tgatcgccgc gagcgagccg tagagataga agtcgtacca ctcgaagacc
     1801 gttccgaggc tcgacgcgaa gatgaccttc ttctcctcgc gtgtcatcgg ccgggcgact
     1861 tttgtgccta ccggaaccgc tgttgtgacc atgtgggtat ccctccgtgc gtgaaacgaa
     1921 tcgccctggg gcgacggcaa gtcgaatatt gacgactttt cgcggcgcac cggcgaaaaa
     1981 caggggctca atgccttggg tgaaaccccg agacgccgtt ccggcgatct gcgctagcag
     2041 gggtcacgct cgcttcacgc cggggcgcgg cgcgccctcg cgttgccagt gcggcgcatc
     2101 gaaccaggag tcgccgcgca ggaaggcggc ggccatgtcg agggcgtcga agccccagaa
     2161 cagcttgtcg ccgatgccca gggtcggcac gccgaagaca ccgcgcgcga gcgccgcgtc
     2221 ggtcgcgtcg cgcaggcgct gcttggcgtc gctcaccgga tcgatgcgcg gcgccagctg
     2281 cgcgacgagc tcggcgtggc gcgctgcgtc gtcggcgtcg gcgccaccgc gccacacatg
     2341 gcgcaggatc gtctcgcaga cgaaccggct cggtgtcgcg tcgatcggcg ccgtcgccca
     2401 cgcgagacgc gacaaggcga tcgggctgaa cggatggcgc tccggggtgt cgagcgggat
     2461 gccggcgcgg tgcgcgagcc agtgcacctg gcgaaaggtc caggcgcgct tcggctcgat
     2521 ctc
//
LOCUS       DASVHM010000790         2792 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_707912, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000790 DASVHM010000000
VERSION     DASVHM010000790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_707912"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(95..772)
                     /locus_tag="VF308_14505"
     CDS             complement(95..772)
                     /locus_tag="VF308_14505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009665133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437916.1"
                     /translation="MAGVRKVFNIGLASEPEVLHGIDLTLEAAEFCAVMGPSGSGKST
                     LLNIVGLLDRPTAGALRICGEDTVGLDDRALTRLRGHSIGFIFQYHHLLSGFTALENV
                     MMPMLGAGHVDDREMADRANRLLDGVGLTRWRDHLATDMSGGQQQRVAVARALAMNPP
                     LILADEPTGNLDTKSAEGVFDLLRGVNRASGTAIMFVTHNAALAARCDRIINVVDGVL
                     APQGGTV"
     gene            complement(786..2021)
                     /locus_tag="VF308_14510"
     CDS             complement(786..2021)
                     /locus_tag="VF308_14510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009665134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX7437917.1"
                     /translation="MRLLPFEAILALRFLREGRLQTIFIVSGVAIGVAVIVFMSALLS
                     GLQANFIRRVLTAQPHIQLLPAKQAARVLRQPADRGEGAVDDAIVQAPLQRVKSIDQW
                     QSIVAQIRALPGVITVTPEAAGSALVVRGDASRAITMVGIEPELYFRIVAIPDKIVRG
                     TTRLTATDMLIGIELASDLGVSVGDKLRVSSAAGGDNTLTVTGIFDLGNKGANQRTTY
                     VALHTAQSLLGLVGGVSSIDMTLHDVYGAETLARRITAATGIEADSWIANNAQFFTAV
                     QAQTTANTTIRFFVGLSVAFGIASVLVVSVVQKSREIGILRAMGISRGQILRIFLIQG
                     GLLGLLGSLAGSALGLGALVLWLRYARNADGTPLFGLVIDPGLFALAVVLATATGLAA
                     AFAPALRAARLDPVVAIRG"
     gene            complement(2053..>2792)
                     /locus_tag="VF308_14515"
     CDS             complement(2053..>2792)
                     /locus_tag="VF308_14515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019657367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX7437918.1"
                     /translation="QRDVDLSEAQLRSAQSQWRSAESDGSDYAVASSALAQARAGAEA
                     ARSRLGYTTLIAPVAGTLIDRQVEPGDVVQPGKALMVLSPSGTTQVIVQIDEKNLQLL
                     ALGQRAWISADAYPEQRFAAIVAYINPGVDAQRGSVEVKLDVTEPPAYLRQDMTVSVD
                     IEVASRAGAVLVPNDAVRDADTARPWVVMVADGRARRQYVQLGLRGTAVSEVTEGAGA
                     GELVVASAQPDVADGSRVRALVAATKP"
BASE COUNT          443 a          982 c          963 g          404 t
ORIGIN      
        1 tgtgcgacgg cgaccgcgcc ggccatcacc cacatcggcg acgggtcccg agggccggcc
       61 cgagacgttg aatcccgcca tcggcgccgg aaggtcaaac ggttccaccc tgcggggcga
      121 gcaccccgtc gacgacgttg atgatgcgat cgcaacgcgc tgccagcgcc gcgttgtgag
      181 tgacgaacat gatcgccgtg ccgctggccc ggttgacccc gcgcagaaga tcgaagacgc
      241 cttcagccga cttggtgtcg agattgccgg tcggctcgtc ggcgagaatc aacggtgggt
      301 tcatcgccaa ggcgcgggcg accgcaacgc gttgctgctg tccaccgctc atgtcggtgg
      361 cgagatggtc gcgccagcgc gtcagaccga cgccgtcgag caggcgattc gcccggtccg
      421 ccatctcgcg gtcgtcgaca tggccggcgc cgagcatcgg catcatcacg ttctcgagcg
      481 ccgtgaatcc agagagcaga tggtggtact gaaagatgaa tccgatgctg tgaccgcgca
      541 gcctcgtcaa cgcgcggtcg tcgagcccga cggtgtcttc gccgcaaatg cgcagcgcgc
      601 cggctgtcgg cctgtcgagc agaccgacga tgttcagcag cgtgctcttg ccggagccgg
      661 agggacccat cacggcgcag aactcggccg cttcgagcgt caggtcgatt ccgtgcagga
      721 cttcgggctc cgacgccaag ccgatgttga agaccttgcg cacgccggcc atccggacca
      781 ccgcgtcagc cacggatcgc caccacgggg tcgaggcgcg cggcgcgcag cgccggcgcg
      841 aaggccgccg ccagcccggt cgccgtcgcc agcacgacgg ccaacgcgaa cagccccggg
      901 tcgatgacca ggccgaagag cggcgtgccg tcggcgttgc gtgcataacg cagccatagc
      961 accagcgccc ccagccccag cgcagagccc gcgagcgagc ccaggagacc gagcagcccg
     1021 ccctggatca ggaagatgcg caggatctgg ccgcgcgata ttcccattgc ccgcaggatg
     1081 ccgatctcgc gcgacttctg cacgaccgac accaccagaa cgctggcgat gccgaaggcc
     1141 accgacaggc cgacgaagaa tcggatcgtc gtattggccg tggtctgcgc ctgcaccgcg
     1201 gtgaagaact gcgcgttgtt ggcgatccag ctgtcggcct cgatgccggt ggcggcagtg
     1261 atccgtcgcg ccagcgtctc ggcgccgtac acgtcgtgaa gcgtcatgtc gatgctcgag
     1321 acgccgccga ccaggccgag gaggctttgc gccgtgtgca gcgcgacgta ggtcgtccgc
     1381 tggttcgctc ccttgttgcc gaggtcgaag attccggtca ccgtgagcgt gttgtcgccg
     1441 ccagcggccg acgagacccg aagcttgtcg ccgacgctca cgccgagatc gctcgccagc
     1501 tcgatgccga tcagcatgtc ggtcgcggtg agccgggtcg tcccgcgcac gatcttgtcg
     1561 gggatcgcga cgatccggaa atagagctcg ggctcgatgc cgaccatcgt gatcgcgcgg
     1621 ctcgcgtcgc cacgaacgac gagcgccgag cccgccgcct cgggcgtcac ggtgatcacg
     1681 ccgggcaagg cgcggatctg ggcgacgatc gactgccatt ggtcgatcga cttgacccgc
     1741 tgcagcggcg cctggacgat cgcgtcgtcc acggccccct cccctcgatc cgccggctga
     1801 cgcagcacgc gcgcggcctg cttggccggc agcagctgga tgtggggttg cgccgtcagc
     1861 acccggcgga tgaaattggc ctgcaggccg ctcaggagtg ccgacatgaa gacgatgacg
     1921 gcgacgccga tggcgacgcc gctgacgatg aagatcgtct gcagccggcc ctcgcgcagg
     1981 aagcgcaagg ccaggatcgc ctcgaacggg agcaagcgca tgcgatgaac ccgggcgagc
     2041 cgcgcgccgc gctcagggct tcgtggcggc gacgagggcg cggacgcggc tgccgtcggc
     2101 gacgtcgggc tgcgcgctcg cgacgaccag ctcgcccgcg ccggcaccct cggtcacttc
     2161 gctgacggcg gtcccgcgca gccccagctg cacgtactga cggcgcgccc gcccgtcggc
     2221 gaccatgacg acccacggcc gcgcggtgtc ggcatcgcgc accgcgtcgt tcgggacgag
     2281 cacggcgcca gcccgtgagg caacctcgat gtccaccgag accgtcatgt cctggcgcag
     2341 atacgccggc ggctcggtga cgtcgagctt cacctcgacc gagccgcgct gcgcgtcgac
     2401 gccggggttg atgtaggcca cgatcgccgc gaaccgctgc tcgggatagg cgtcggcgga
     2461 gatccatgcg cgttggccga gggccaggag ctgcaggttc ttctcgtcga tctgcacgat
     2521 gacctgcgtg gtgccggaag gcgacagcac catcagcgcc ttgccgggct gaaccacgtc
     2581 gcccggttcg acctgacgat cgatcaacgt ccccgcgacg ggcgcgatga gcgtcgtgta
     2641 gcccagtcga gagcgcgcgg cttccgcgcc tgcgcgcgcc tgcgcgagcg cgctcgacgc
     2701 caccgcgtag tcgctgccgt cggactccgc gctgcgccac tggctttgcg ccgagcgcaa
     2761 ctgcgcttcg ctcaggtcga cgtcgcgctg cg
//
LOCUS       DASVHM010000791         2175 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_129836, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000791 DASVHM010000000
VERSION     DASVHM010000791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129836"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..503
                     /locus_tag="VF308_14520"
     CDS             <1..503
                     /locus_tag="VF308_14520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEX7437919.1"
                     /translation="RGSASKARLITTLRTTLRNTIVHPVVLPVLAGFAWNLSGQPLPA
                     VADEILQTLGQAVVPVCLVLIGMSLAYYGMRGAARGAVVLAVVKLALLPALVLAIARG
                     GFGLTGLPLAVVVMMAALPVGSNALIFSQRYETLQSEASAAIVFSTLAFVATAPLWLA
                     ILHFVG"
     gene            578..>2175
                     /locus_tag="VF308_14525"
     CDS             578..>2175
                     /locus_tag="VF308_14525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009666250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437920.1"
                     /translation="MNLRGLTFKAIALAVLAGGAGAAFATKTLVYCSEGSPEGFNPQY
                     YTTGTTFDAASVPMYNRLVEFQIGTTHIVPGLAESWSAAPDGLSYTFKLRHGVKFHST
                     PKFTPTRDFNADDVLFSYNRMADPNHPMAKTLPGATYAYYDDMDMKNIVDRVEKVDPM
                     TVRFVLKKPEAPFMANMAMDFASILSAEYADKMKAAGTPEVIDREPVGTGPFQFVSYQ
                     KDAVISYKAFDQHWGGRPKIDNLVFAITTDASVRYAKLKTGECHAMAFPKPADVALMK
                     NDPSINLVQQNGLNVGYIAFNVEKKPFDSKMVRQALNMAVNKKAILDSVFQGAGQIAK
                     NPIPPTLWSYNDKVQDYPYDPAKAKALLAQAGYPNGAEVELWYLPVTRPYNPDGKRMA
                     ELIQADWEKVGVKTKLVTFEWGEYRKRSKTGEQHAMMFGWSGDNGDPDNFFVPLLGCA
                     AVKGGGNVARWCNKDFEDAVQKAKGVTKQSDRAALYMKAQEIAKEEAPWITIAHSVRF
                     DPIRKEVIGYKMDATAHHYFNKVD"
BASE COUNT          413 a          733 c          697 g          332 t
ORIGIN      
        1 atcgcgggag cgcctccaag gccaggctga tcacgacgct gcgaacgacg ctgcgcaaca
       61 ccatcgtcca cccggtcgtg ctgccggtgc tggccggctt cgcttggaac ctgtccggcc
      121 agccgctgcc ggcggtcgcc gacgagatcc tgcagacgct cggccaggcg gtcgtgccgg
      181 tctgcctggt gctgatcggc atgtcgctcg cctattacgg catgcgcggc gcggcgcgcg
      241 gcgccgtggt gctggcggtc gtgaagctgg cgctgctgcc cgccctcgtg ctcgcgatcg
      301 cgcgcggggg gttcggcctc accggcctgc cgctcgcggt ggtcgtgatg atggcggcgc
      361 tgccggtcgg cagcaacgcg ctgatcttct cgcagcgcta cgaaaccctg caatcggagg
      421 cgagcgcggc gatcgtgttc tccacgctcg ccttcgtcgc gaccgcgccg ctgtggctcg
      481 cgatcctgca cttcgtgggc tgaggcccga tgcctcgcct attattattc gatctcgctc
      541 cgcacgcggc attctttcac tcgccaggga cacagccatg aacctacgcg gcctcacctt
      601 caaagccatc gcccttgccg tcctcgccgg cggcgccggc gcggcgttcg cgacgaagac
      661 gctggtctac tgctcggaag gaagccccga aggtttcaac ccgcagtact acacgaccgg
      721 gaccaccttc gacgccgcgt cggtgccgat gtacaaccgg ctggtcgagt tccagatcgg
      781 cacgacgcac atcgtgcccg ggctcgccga aagctggagc gccgcgcccg acggcctctc
      841 gtacaccttc aagctgcgcc acggcgtcaa gttccacagc acgccgaagt tcacgccgac
      901 gcgcgacttc aacgccgacg acgtgctgtt ctcgtacaac cgcatggccg acccgaacca
      961 cccgatggcc aagacgctgc cgggcgcgac ctacgcgtac tacgacgaca tggacatgaa
     1021 gaacatcgtc gaccgggtcg agaaggtcga tccgatgacg gtgcgcttcg tgctgaagaa
     1081 gcccgaggcg ccgttcatgg ccaacatggc gatggacttc gcgtcgatcc tcagcgccga
     1141 gtacgccgac aagatgaagg ccgccggcac gcccgaggtg atcgaccgcg agccggtcgg
     1201 caccggcccg ttccagttcg tctcgtacca gaaggacgcg gtgatcagct acaaggcctt
     1261 cgaccagcac tggggcggac ggccgaagat cgacaacctg gtcttcgcga tcacgaccga
     1321 cgcctcggtg cgctacgcca agctcaagac cggcgagtgc cacgcgatgg cgttcccgaa
     1381 gccggccgac gtggcgctga tgaagaacga cccgagcatc aacctggtgc agcagaacgg
     1441 gctcaacgtc ggctacatcg ccttcaacgt cgagaagaag ccgttcgaca gcaagatggt
     1501 gcgccaggcg ctgaacatgg cggtcaacaa gaaggcgatc ctcgactcgg tgttccaggg
     1561 cgcgggccag atcgcgaaga acccgatccc gccgacgctc tggtcgtaca acgacaaggt
     1621 ccaggactac ccctacgatc cggcgaaggc gaaggcgctg ctggcgcagg ccggctatcc
     1681 gaacggcgcc gaggtcgagc tctggtacct gccggtgacg cgcccctaca acccggacgg
     1741 caagcgcatg gccgagctga tccaggccga ttgggaaaag gtcggtgtca agaccaagct
     1801 cgtcaccttc gaatggggcg agtacaggaa gcgcagcaag accggcgagc agcacgcaat
     1861 gatgttcggc tggtccggcg acaacggcga cccggacaac ttcttcgtgc cgctgctcgg
     1921 ctgcgcggcc gtcaagggcg gcggcaacgt cgcgcgctgg tgcaacaagg acttcgagga
     1981 cgcagtgcaa aaggccaagg gcgtgaccaa gcagtccgac cgcgccgcgc tctacatgaa
     2041 ggcgcaggaa atcgccaagg aagaagcgcc ctggatcacg atcgcccact cggtgcgctt
     2101 tgatccgatt aggaaggaag tgatcggcta caagatggac gcgaccgcac accactactt
     2161 caacaaggtg gacat
//
LOCUS       DASVHM010000792         1620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1141253, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000792 DASVHM010000000
VERSION     DASVHM010000792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1620
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1141253"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..236)
                     /locus_tag="VF308_14530"
     CDS             complement(<1..236)
                     /locus_tag="VF308_14530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007855201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pili twitching motility protein PilT"
                     /protein_id="HEX7437921.1"
                     /translation="MSTGNMERVLRLMSEKGASDVYLSASSPILIKINGQLLQLSDQP
                     LTHAQPRQLLAELLTPSQLEELEDTGELNIGVGL"
     gene            complement(350..1171)
                     /gene="dapD"
                     /locus_tag="VF308_14535"
     CDS             complement(350..1171)
                     /gene="dapD"
                     /locus_tag="VF308_14535"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008666 -
                     2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HEX7437922.1"
                     /translation="MTQELQNTIDLAWESRASLTPENAPEISEAVETVIADLNNGRIR
                     VAERQGVGQWRVNQWVKKAVLLSFRLHDNQIMRAGDLGFFDKVRTKFAHLDHEQMRAT
                     GVRVVPPAVARRGAFLAKNVILMPSFVNIGAYVDEGTMVDTWATVGSCAQIGKGVHLS
                     GGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEENSVISMGVYIGQSTKIYDR
                     ASGAVSYGRVPAGSVVVSGNLPSADGKYSLYCAVIVKRVDAQTRAKTSINDLLRS"
     gene            complement(1168..>1620)
                     /locus_tag="VF308_14540"
     CDS             complement(1168..>1620)
                     /locus_tag="VF308_14540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011808084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX7437923.1"
                     /translation="PGLRSGFVAGDATLLKQFLLYRTYHGSAMNPAVQRASAVAWGDE
                     EHVVLNRQLYRDKFAQVTPLLARTLEVELPDAGFYLWPKVPGGDDIGFARNLLAQYNV
                     TVLPGSLLARESHGVNPGAGRIRLALVAEIEECLEAARRIVSFTQSLA"
BASE COUNT          245 a          524 c          557 g          294 t
ORIGIN      
        1 ctgaggccga cgccgatgtt gagctcgccg gtgtcctcga gctcctcgag ctggctcggc
       61 gtcagcaact cggcgaggag ctggcgcggt tgcgcatggg tcagcggctg gtcgctgagc
      121 tgcagcagct ggccgttgat cttgatgagg atcggcgagc tggccgacag gtacacgtcc
      181 gacgcgccct tctcggacat cagtcgaagt acgcgctcca tgtttcccgt gctcatgccg
      241 atcctttccg aagcaaatgg ggacgattgt gcaacgcgtc acggggccgc gcccggccaa
      301 atgagtgaac gaataccgtc ggatgccggc gcatcgtcga gcccgcgcgt cagcttcgga
      361 gcaggtcgtt gatgctcgtc ttggcccggg tctgggcatc gacgcgcttg acgatcaccg
      421 cgcaatagag gctgtacttg ccgtcggcgc tcggcaggtt gccgctcacc accaccgacc
      481 cggccggcac ccgcccatag ctcactgcgc cgctggcgcg gtcgtagatc ttggtgctct
      541 ggccgatgta gacgcccatc gagatgaccg agttctcctc gacgatgacg ccttcgacga
      601 tctcggagcg cgcgccgatg aagcagttgt cctcgatgat ggtcggattg gcctggagcg
      661 gctccagcac gccgccgatg ccgacgccgc ccgacaggtg cacgcccttg ccgatctgcg
      721 cgcatgaccc cacagtcgcc caggtgtcga ccatcgtgcc ttcgtcgaca taggcgccga
      781 tgttgacgaa gctcggcatc aggatcacgt tcttcgcgag gaaggcgccg cgtcgcgcca
      841 ccgccggcgg gaccacgcgc accccggtcg cgcgcatttg ctcgtggtcg aggtgcgcga
      901 acttggtccg gaccttgtcg aagaagccga ggtcgccggc ccgcatgatc tggttgtcgt
      961 gcaggcgaaa actcagcagc accgccttct tgacccactg gttgacgcgc cactggccga
     1021 cgccttggcg ctcggcgacg cggatgcggc cattgttcag gtcggcgatg accgtctcga
     1081 cggcttcgct gatttcgggt gcgttttcgg gcgtcaggct ggcgcggctt tcccaggcga
     1141 ggtcgatggt gttttgcagt tcttgggtca tgcgagcgat tgggtgaagg agacgatgcg
     1201 ccgcgcggcc tcgaggcatt cttcgatttc ggcgacgagc gcgagccgga tgcggcccgc
     1261 gcccggattg acgccgtgcg actcgcgtgc gagcaggctg ccgggcagca cggtgacatt
     1321 gtattgagcg aggaggttgc gcgcgaagcc gatgtcgtcg ccgcccggca ccttgggcca
     1381 gaggtagaag ccggcgtcgg gcagctcgac ctcgagcgtc ctggccagca gcggcgtgac
     1441 ctgcgcgaac ttgtcgcgat acagctgccg gttcaacacg acatgctcct cgtcgcccca
     1501 ggccaccgcg ctcgcgcgct ggaccgccgg gttcatcgcg ctgccgtggt aggtgcggta
     1561 gagcaggaat tgcttcagga gggtcgcgtc gccggcgacg aagcccgagc gcaggcccgg
//
LOCUS       DASVHM010000793         4531 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1285651, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000793 DASVHM010000000
VERSION     DASVHM010000793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4531
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1285651"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            203..1780
                     /locus_tag="VF308_14545"
     CDS             203..1780
                     /locus_tag="VF308_14545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013952761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7437924.1"
                     /translation="MNRPLFAATVAVLTCGLLGSAPDAAAQTKTLRFVPHADLKILDP
                     SFTTAYITRNFGYMVYDTLFAQDAKGVPKPQMVDKYTTSKDGKQWSFTLRPGLKFHDG
                     NAVTAADCIASLQRWGARDSIGRAMGAAGAEWKAVDANTFTLTLKEPFGLVLDALAKP
                     SGFPPVIMPERLANAPTTAPLTEVMGSGPFLFKRDEWVPGNKAVFVRNPNYVGRAEPP
                     SGLSGNKKPHFDRVEWLYLPDSNSSTAALKNGEVDMIEQVPPDYITPLRGDPNIKLGS
                     GGSYQGFIVMNQLHPPFNNPKVRQAVLHAVNQEKFVAGMGYPLDMRLTYCATWFICGG
                     PNQTDAGSGPYRKTDLAKAKQLLAEGGYKGEKIVVLLPTDISYLNAAALVTIQTLKSI
                     GMNVDAQSSDWSSITARRAKKDAPEAGGWNIYVTVAGEFDVNSPVTNAYLSAACGNAL
                     PGWPCDKPLDELRTAWIRETAPIKRKELLDSFQERAFEAVPYAYFGQYSPAYAARKSL
                     KNLDQYWSIPTLWALDK"
     gene            1820..2755
                     /locus_tag="VF308_14550"
     CDS             1820..2755
                     /locus_tag="VF308_14550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013952760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437925.1"
                     /translation="MRSLAQRILATLPVMAVVALIVFLLIHLSPGDPAALIAGDLATT
                     DDIARLRASLGLDQPLWRQFLLWAAKLARGDLGTSIFTQVPVTELLAQRLEPTLSIAL
                     LTMALSLVLAIPLGTLAAYRAGSWVDRLVMLFAVLAFSVPVFLIGYLLIYTFSIVLHW
                     LPVQGYVHLSEGVGPWLRNLVLPCVNLALVYMALLTRMTRATVLEVLQEDYIRTARAK
                     GLGVLAVLGHALRNAAIPIATTVGVGIALLIGGVVVTETVFAIPGIGRLVIDSVQRHD
                     YPVIQSVLLLSAGVYVLINLLIDLSYRLFDPRIRD"
     gene            2760..3629
                     /locus_tag="VF308_14555"
     CDS             2760..3629
                     /locus_tag="VF308_14555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013952759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7437926.1"
                     /translation="MAATTSALAPPVVAQRGRWLRKHPTLILGALLLIAVALIALGAP
                     WLATLDPQDIDPLARLQPPSAEHRFGTDALGRDVYSRAVWGGRVSLVVGVTVALLSTV
                     IGVVLGLLAGFVRGIEGVVMRVMDGLMAIPGILLAIALMAVTRASLTTVIVAITVPEV
                     PRVVRLVRSLALTLREQLFVEAAHAIGTRLPLILWRHVLPNMMAPLIVQATFIAASAV
                     LIEAALSFLGVGVPGQTPSWGNMMAEGRNFVAVAFHIILYPGILLALTVLAINLLGDG
                     LRDALDPRLARQL"
     gene            3636..>4531
                     /locus_tag="VF308_14560"
     CDS             3636..>4531
                     /locus_tag="VF308_14560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437927.1"
                     /translation="MSHAIGANLQVDASVVPLLEVDDLHTHFDTVGGTVRSVDGVSWR
                     LDAGQTLGVVGESGCGKSVTALSILRLVPTPPARHGGSIRYRGTDLLRLTEREMRQIR
                     GNRISMIFQEPMTSLNPVLSVGRQIAETVTVHQQVGRREALERSIEMLRLVQIAGPER
                     RVAEYPHQLSGGMRQRVMIALALACKPEVLIADEPTTALDVTIQAQILELLRGLQRQL
                     GMGVVMITHDLGVVAECCDRVVVMYAGRKVEEASVLDLFDRPLHPYTRALMASMPSMN
                     TAAARLTEIPGMVPGPGDLGLG"
BASE COUNT          694 a         1648 c         1459 g          730 t
ORIGIN      
        1 tctcgcttgc agcagcccgc ctggtcatgt gagagcccgc cggtctcggc cggcgggctc
       61 tcgcaagcag cgcaaaaccc ccgcgcaaag gaagcggcgg caagccggga caagatcctg
      121 ccccgtctgc aggggcaaac cacggttctc aggcgccggg ttgcgcccga caatccgttc
      181 actacgtaaa caggagccat cgatgaaccg ccctctgttc gccgcgaccg tcgcagtgct
      241 tacctgcggc ctgctcggca gcgcgcccga tgcggcggcc cagaccaaaa cgctgcgctt
      301 cgtgccgcat gccgacctga agatcctcga cccgtcgttc acgaccgcct acatcacccg
      361 caacttcggc tacatggtct acgacacgct tttcgcgcag gacgcaaaag gcgtgccgaa
      421 gccgcagatg gtcgacaagt acacgacctc caaggacggc aagcagtggt cgttcacgct
      481 gcgcccgggc ctcaagttcc acgacggcaa cgccgtcacc gcggccgatt gcatcgcctc
      541 gctgcagcgc tggggcgcgc gcgacagcat cggccgggcg atgggcgcgg ccggcgccga
      601 atggaaggcg gtcgatgcga acacgttcac gctgaccttg aaggagccgt tcggcctcgt
      661 cctcgacgcg ctcgccaagc cgtcgggatt cccgccggtg atcatgcccg agcgtctcgc
      721 caacgcgccg accaccgcgc cgctgaccga agtgatgggc tcgggcccgt tccttttcaa
      781 gcgcgacgaa tgggtgcccg gcaacaaggc ggtgttcgtg cgcaatccga actacgtcgg
      841 acgcgccgag ccgccgagcg gcctgtcggg caacaagaag ccgcacttcg accgcgtcga
      901 gtggctctac ctgcccgact cgaacagctc gaccgcggcc ctgaaaaacg gcgaggtcga
      961 catgatcgag caggtgccgc ccgactacat cacgccgctg cgcggcgacc ccaacatcaa
     1021 gctcggcagc ggcggctcgt accagggctt catcgtgatg aaccagctcc atccgccctt
     1081 caacaacccg aaggtgcgcc aggccgtgct gcacgccgtc aaccaggaga agttcgtcgc
     1141 cggcatgggt tacccgctcg acatgcgcct cacctactgc gccacctggt tcatctgcgg
     1201 cggaccgaac caaaccgacg ccggctccgg gccctatcgc aagaccgatc tcgcgaaagc
     1261 gaaacagctg ctggccgagg gcggctacaa gggcgagaag atcgtcgtgc tgctgccgac
     1321 cgacatctcg tacctgaacg ccgcggcctt ggtgacgatc cagaccctga agagcatcgg
     1381 catgaacgtc gacgcgcaat cgagtgactg gtcgtcgatc accgcgcgcc gcgccaagaa
     1441 ggatgcgccc gaggccggtg gctggaacat ctacgtcacg gtcgcgggcg agttcgacgt
     1501 caactcgccg gtcaccaacg cctacctcag cgcggcctgc ggcaatgccc tcccgggctg
     1561 gccctgtgac aagccgctcg acgagctccg caccgcctgg atccgcgaga cggctccgat
     1621 caagcgcaag gagttgctcg acagcttcca ggagcgtgct ttcgaagcag tgccgtatgc
     1681 ctatttcggc cagtactcgc cggcctacgc ggcgcgaaag agcctgaaga acctggacca
     1741 gtactggagc atcccgacgc tctgggcgct cgacaagtag gcgcaggggc cggacgtccg
     1801 ccggccgcga agcaccttta tgcggtccct cgcgcaacgc atcctggcca cgctgccggt
     1861 catggcagtc gtggcgctga tcgtcttcct gctgatccac ctctcgcccg gcgacccggc
     1921 ggcgctcatc gccggcgacc tcgcgaccac cgacgacatc gcgcggctgc gcgcctcgct
     1981 cggactcgac cagccgctct ggcgccagtt cctgctctgg gccgcaaagc tcgcgcgcgg
     2041 cgacctgggc acgtcgatct tcacgcaggt gccggtcacc gaattgctgg cgcagcgcct
     2101 cgagccgacg ctctcgatcg cgctgctgac gatggcgctc tcgctcgtcc tcgcgattcc
     2161 gctcggcacg ctggccgcct accgcgccgg atcgtgggtc gaccggctgg tgatgctgtt
     2221 cgcggtgctg gcgttctcgg tgccggtgtt cctgatcggc tacctgctga tctacacctt
     2281 ctcgatcgtc ctgcactggc tgccggtgca gggctacgtg cacttgtccg aaggggtcgg
     2341 cccgtggctg cgcaacctcg tgctgccgtg cgtgaacctc gcgctggtct acatggcgct
     2401 gctcacgcgt atgacgcgcg cgacggtgct cgaggtgctg caggaagact acatccgcac
     2461 cgcgcgcgcg aagggcctcg gcgtgctcgc cgttctcggg cacgccttgc gcaacgcggc
     2521 gatcccgatc gcgacgacgg tcggcgtcgg catcgcgctc ctgatcggcg gcgtcgtcgt
     2581 caccgagacc gtgttcgcga tccccggcat cggcaggctc gtcatcgact cggtgcagcg
     2641 ccacgactat ccggtcatcc agagcgtgct gctgctctcg gccggcgtct acgtgcttat
     2701 caacctgctg atcgacctca gctaccggct gttcgatccg cgcatccgcg actgatgcga
     2761 tggccgccac gacctccgcg ctcgccccgc ccgtcgtcgc gcagcgcggg cgctggctgc
     2821 gcaagcaccc gaccttgatc ctcggcgcgc tcctgctcat cgcggtcgcg ctgatcgcgc
     2881 tcggcgcgcc ctggctggcg acactcgacc cgcaggacat cgacccgctt gcgcgcctcc
     2941 agccgccctc ggccgagcac cgcttcggca ccgatgcgct cggtcgcgac gtctacagcc
     3001 gcgccgtctg gggcggccgc gtctcgctcg tcgtcggcgt caccgtcgcg ctgctctcga
     3061 ccgtcatcgg cgtcgtgctc ggcctgctcg ccggcttcgt aagggggatc gaaggcgtgg
     3121 tgatgcgcgt gatggacggg ctgatggcga tccccggcat cctgctcgcg atcgcgctga
     3181 tggcggtcac gcgggccagc ctgacgacgg tgatcgtcgc gatcacggtc cccgaagtgc
     3241 cgcgcgtcgt gcgcctggtg cgctcgctcg cgctgacatt gcgcgaacag ctcttcgtcg
     3301 aggccgcgca tgcgatcggc acccggctgc cgctgatcct gtggcgccac gtgctgccca
     3361 acatgatggc gccgctgatc gtgcaggcga ccttcatcgc cgcctcggcg gtgctgatag
     3421 aagcggcgct ctcgttcctc ggcgtcggcg tgccggggca gacgccgagc tggggcaaca
     3481 tgatggccga gggccgcaac ttcgtcgcgg tcgcgttcca catcatcctg taccccggaa
     3541 tcctgctcgc gctgaccgtg ctcgcgatca acctgctcgg cgacggcctg cgcgacgcgc
     3601 tcgatccgcg cctggcgcgg cagttgtagc ctgcgatgag ccacgccatc ggcgcgaacc
     3661 tgcaagtcga tgcaagcgtc gtcccgctgc tcgaggtcga cgacctgcac acccacttcg
     3721 acaccgtcgg cggcacggtc cgttcggtcg atggcgtgtc gtggcgtctc gacgccgggc
     3781 aaacgctcgg cgtggtcggc gaatcaggct gcggcaagag cgtcaccgcg ctctcgatcc
     3841 tgcgcctcgt gccgacgccg ccggcgcgcc acggcggcag catccgctac cgcggcaccg
     3901 acctgctgcg cctgaccgag cgggagatgc gccagatccg cggcaaccgc atctcgatga
     3961 tcttccagga gccgatgacg tccctcaacc cggtgctcag cgtcgggcgg cagatcgccg
     4021 agaccgtgac cgtgcaccag caagtgggcc ggcgcgaggc gctcgaacgc tcgatcgaga
     4081 tgctgcgcct agtgcagatc gccgggccgg aacgccgcgt cgccgagtat ccgcaccagc
     4141 tttccggcgg catgcgccag cgcgtgatga tcgcgctcgc cctcgcctgc aagcccgagg
     4201 tgctgatcgc cgacgagccg accaccgccc tcgacgtcac gatccaggcc cagatcctcg
     4261 agctgctgcg cggcctgcag cgccagctag gcatgggcgt cgtgatgatc acgcacgacc
     4321 tcggcgtcgt cgccgagtgc tgcgaccgcg tggtcgtgat gtacgccggc cgcaaggtcg
     4381 aggaagcgtc ggtgctagac ctcttcgatc ggccgctcca tccgtacaca cgtgcgctga
     4441 tggcgtcgat gccgtcgatg aacacggccg cggcgcgcct caccgaaatc cccggcatgg
     4501 tgccggggcc cggcgacctc ggcctgggct g
//
LOCUS       DASVHM010000794         1733 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_851735, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000794 DASVHM010000000
VERSION     DASVHM010000794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_851735"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..336)
                     /locus_tag="VF308_14565"
     CDS             complement(<1..336)
                     /locus_tag="VF308_14565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005796758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEX7437928.1"
                     /translation="MHDIIQQLEEKRAKARLGGGTRRIAAQHEKGKLTARERLELLLD
                     EDTFEEWDMFVEHRSTDFGMQDNRPPGDGVVTGYGMINGRLVFVFSQDFTVFGGALSE
                     AHAEKICKVM"
     gene            complement(366..1355)
                     /gene="meaB"
                     /locus_tag="VF308_14570"
     CDS             complement(366..1355)
                     /gene="meaB"
                     /locus_tag="VF308_14570"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007855225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HEX7437929.1"
                     /translation="MLTGVRRGERRALAKAITLLESTRAEHRRRADALLNELLPDTGK
                     AIRLGISGVPGVGKSTLIEALGLFLIGKGHRVAVLAIDPSSSVSGGSILGDKTRMERL
                     SVNDAAYIRPSPTSGTLGGVAEKTRETILVCEAAGYDVVIVETVGVGQSETAVAGMTD
                     MFVLMQLPNAGDDLQAIKKGVMEVADLVVINKADLDAAAATRAEAQITSALRVFGFHG
                     HPEHGPARWQTRVMQMSALSRQGLEAVWGSVEEFHRQGRASGEFEARRRRQATAWMWD
                     IIQAGLQSEFRSHPAVRAALADTLADVTAARVAPSAAARSLLTRFASSKRIDP"
     gene            complement(1389..>1733)
                     /locus_tag="VF308_14575"
     CDS             complement(1389..>1733)
                     /locus_tag="VF308_14575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560744.1"
                     /note="Presence of a B(12) (cobalamin)-binding domain
                     implies dependence on cobalamin itself, in one of its
                     several forms, or in some unusual lineages, dependence on
                     a cobalamin-like analog; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-dependent protein"
                     /protein_id="HEX7437930.1"
                     /translation="VVATAFADLGFDVDIGPLFQTAEECARQAIENDVHAVGVSTLAA
                     GHKTLVPAIIESLKAQGADDIIVFVGGVIPRQDYEFLVEAGVKGIYGPGTPIPASAKD
                     VLEQIRAHVRKA"
BASE COUNT          248 a          610 c          573 g          302 t
ORIGIN      
        1 catcaccttg cagatcttct cggcgtgcgc ctccgagagc gccccgccga agacggtgaa
       61 gtcctggctg aagacgaaga ccagccggcc gttgatcatc ccgtagccgg tgacgactcc
      121 gtcgccgggc ggtcggttgt cctgcatgcc gaagtcggtg ctgcggtgct cgacgaacat
      181 gtcccattcc tcgaacgtgt cttcgtcgag gagcaactcc aggcgctcgc gcgcggtgag
      241 cttgcctttt tcgtgctgcg ccgcgatgcg ccgggtgccg ccgccgaggc gcgccttggc
      301 gcgcttttct tcgagctgct ggatgatatc gtgcatgggc gctctttcta cggcgtcgat
      361 ctctttcacg ggtcgattct tttcgatgac gcgaaccgtg tcagcagcga gcgcgccgcc
      421 gccgacggcg cgacgcgagc cgcggtgacg tcggcgagag tatcggccag cgctgcgcgc
      481 accgcgggat gggatcggaa ttcgctctgc agtccggcct ggatgatgtc ccacatccac
      541 gccgtggcct ggcgccggcg ccgcgcctcg aattcgccgc tcgcccggcc ctgccggtga
      601 aactcctcga cactgcccca gacggcctcc agcccctggc ggctgagtgc gctcatttgc
      661 atcacgcgag tctgccagcg cgcgggcccg tgctccggat ggccatgaaa tccgaacacc
      721 cgcagcgcgc tcgtgatctg ggcctcggcg cgcgttgccg ccgcggcgtc gagatcggcc
      781 ttgttgatga cgacgaggtc ggccacttcc atcacgccct tcttgatggc ctgaaggtcg
      841 tcgccggcgt tcggcagctg catcagcacg aacatgtcgg tcatgccggc gaccgcggtc
      901 tcgctctggc ccacgccgac ggtctcgacg atcaccacgt cgtagcccgc ggcctcgcag
      961 acgaggatgg tttcgcgcgt cttctccgca accccgccga gcgtgcccga ggtcgggctc
     1021 ggccggatgt aggcggcgtc gttgaccgag agccgctcca tgcgcgtctt gtcgccgagg
     1081 atcgaacccc ccgagacgct cgacgacggg tcgatcgcca gcaccgcgac acggtgcccc
     1141 ttgccgatca ggaaaaggcc gagcgcctcg atcaaggtcg acttgccgac acccggcacg
     1201 ccggagatgc cgaggcggat cgccttgccg gtgtccggca acagctcgtt cagcagggca
     1261 tcggcacgcc gccgatgctc ggctcgtgtc gactcgagca gcgtgatcgc cttggccagg
     1321 gcgcgacgct cgccgcgccg aacgcccgtg agcatcgcct gatctgcggc gttcaagggc
     1381 acggacgctc aggccttgcg gacatgggcc ctgatctgct cgagcacgtc cttcgcgctc
     1441 gccggaatcg gcgtgccggg cccgtagatg cccttgacgc cggcttcgac caggaactcg
     1501 tagtcctggc gcggaatcac gccgccgacg aagacgatga tgtcgtcggc gccctgcgct
     1561 ttcagcgatt cgatgatcgc cggcaccagc gtcttgtgcc ccgcggcgag ggtgctgacg
     1621 ccgaccgcgt gcacgtcgtt ctcgatcgcc tggcgcgcgc actcctcggc ggtctggaac
     1681 aacggcccga tgtcgacgtc gaagccgagg tcggcgaagg ccgtcgcgac gac
//
LOCUS       DASVHM010000795         2315 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_419647, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000795 DASVHM010000000
VERSION     DASVHM010000795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2315
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419647"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..752
                     /locus_tag="VF308_14580"
     CDS             <1..752
                     /locus_tag="VF308_14580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015014946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437931.1"
                     /translation="VIGLFSLRVKAIFFAMITLAVASAFLTLASQLSDFTGGEDGLTF
                     KVPEALQPATQYLEEPFLGASIDGRLAAYYLLFFVALALVLALLRIVNSPFGRVLQAI
                     RENDFRAEAIGYRTVVYRTLASVLSALFATLAGVLLALWLRYTGPDTTLSFEIMLDVL
                     LIVVIGGMGTIYGAVVGSVLLVLAQSYLQDLMKLGASAVEGVPLLSQIVSPDRWLLWL
                     GILFVLSVYYFPAGVVGRLRAMRGAARVGKA"
     gene            749..1594
                     /locus_tag="VF308_14585"
     CDS             749..1594
                     /locus_tag="VF308_14585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7437932.1"
                     /translation="MTPTSNYLRCAGREIHYMEWGAAHAETVIAWHGLARTCRDMDDL
                     AAHLATRRYRVICPDTIGRGLSEWSPDPEHEYCLAFYAKLAVALVDQLGLERFHWVGT
                     SMGGAIGTLAAAGPLRKRMRSLVLNDNGPQLAQAAIERIRSYAGAPASFATVTELEQY
                     FRTIYKPYGWLSDAQWRRLTESSTRRLPDGRVTPHYDPNMVMQFTHHANEYELWNAWD
                     TLDLPVLCLRGESSDLLLRETADAMRVRGPKAQVVEVAGCGHAPALNTAEHFGLVERF
                     FVAAG"
     gene            complement(1618..2208)
                     /locus_tag="VF308_14590"
     CDS             complement(1618..2208)
                     /locus_tag="VF308_14590"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HEX7437933.1"
                     /translation="MGLFSLEHGKAAYRVDFAAYGTAVVLLTAFLLAATPHVRRLEIG
                     VLACVGLASWTAIEYALHRFVLHGLEPFRSWHAEHHRRPTALICTPTILSAALIAALV
                     FLPALVLGDVWRACALTLGITTGYLAYATTHHATHHWRARNAWLKRRKHWHALHHLRV
                     AQPGCFGVTSAFWDHLFGSTHRAAAPANDDESWCDA"
BASE COUNT          341 a          817 c          784 g          373 t
ORIGIN      
        1 tcgtgatcgg tctcttcagc ctgcgcgtga aggcgatctt cttcgcgatg atcacgctcg
       61 cggtggcgtc ggcgttcctg acgctggcct cgcagctgtc ggacttcacc ggcggcgagg
      121 acggcctgac cttcaaggtg cccgaggcgc tgcagccggc gacccagtac cttgaagagc
      181 ccttcctcgg cgcctcgatc gacgggcgcc tcgccgccta ctacctgctc ttcttcgtcg
      241 cgctggcgct cgtgctggcg ctgctgcgca tcgtcaactc gcccttcggc cgcgtgctcc
      301 aggcgattcg cgagaacgac ttccgcgccg aggcgatcgg ctatcgcacc gtcgtctacc
      361 gcacgctcgc gagcgtgctc tcggcgctgt tcgccacgct cgccggcgtg ctgctcgcgc
      421 tctggctgcg ctataccggg cccgacacca cgctctcgtt cgagatcatg ctcgacgtgc
      481 tgctgatcgt cgtgatcggc ggcatgggca cgatctacgg ggccgtcgtc ggcagcgtcc
      541 tgctggtgct ggcgcagagc tatctgcagg acctgatgaa gctcggcgcc tcggccgtgg
      601 aaggcgtgcc gctgctctca caaatcgtct cgcccgaccg ctggctgctc tggctcggca
      661 tcctgttcgt gctctcggtc tactattttc cggccggcgt ggtggggcgg ctgcgcgcca
      721 tgcgcggcgc cgcacgggtg ggcaaggcat gaccccgacc tcgaactacc tgcgttgcgc
      781 aggccgcgag atccactaca tggagtgggg ggccgcgcac gccgaaacgg tgatcgcctg
      841 gcacggcctg gcccgcacct gccgcgacat ggacgacctg gccgcgcacc tcgcgacgcg
      901 gcgctatcgc gtgatctgtc ccgacacgat cggccgcggc ctgagcgagt ggagcccgga
      961 cccggagcac gagtactgcc tcgcgttcta cgcgaagctc gctgtcgcgc tcgtcgacca
     1021 gctcgggctc gagcgtttcc actgggtcgg cacctcgatg ggcggcgcca tcggcacgct
     1081 cgccgcggcc gggcccttgc gcaagcgcat gcgcagcctg gtgctcaacg acaacggccc
     1141 gcaactcgcc caggcggcga tcgagcgcat ccgcagctat gccggcgcgc ccgcgtcgtt
     1201 cgcgacggtg accgagctcg agcagtactt ccgcaccatt tacaagccct acggctggct
     1261 cagcgacgcg cagtggcggc ggctcaccga aagctcgacg cggcgcctgc ccgacggccg
     1321 cgtgacgccg cactacgacc cgaacatggt gatgcagttc acccaccatg cgaacgaata
     1381 cgagctgtgg aacgcctggg acacgctcga cctgccggtg ctgtgcctgc gcggagaaag
     1441 ctccgacctg ctgctgcgcg agacggccga cgcgatgcgc gtgcgcggcc cgaaggccca
     1501 ggtcgtcgaa gtcgccggct gcggccatgc gccggccctc aatacggcgg agcatttcgg
     1561 gctcgtcgag cgcttcttcg tcgccgccgg ctgaacgtgc gcggcgcgct caggttccta
     1621 ggcgtcgcac cacgactcgt cgtcgttcgc cggcgccgca gcgcggtgcg tgctgccgaa
     1681 caggtgatcc cagaacgcac tcgtcacgcc gaagcagccc ggctgcgcga cgcgcagatg
     1741 gtgcagggca tgccaatgct tgcgccgctt cagccaggca ttgcgggcgc gccaatggtg
     1801 agtggcgtgg tgcgtggtcg cgtaggccag atagccggtc gtgatgccga gcgtgagggc
     1861 gcaggcgcgc cacacgtcac ccaacaccag ggccgggagg aagaccagcg cggcgatcag
     1921 cgccgcgctc aggatcgtcg gcgtgcagat caacgccgtg ggccgacggt ggtgctccgc
     1981 gtgccagctg cgaaacggct ccaggccgtg cagcacgaag cggtgcaacg cgtactcgat
     2041 ggcggtccag ctcgccaggc cgacgcaggc gagcaccccg atttcgagcc tgcgcacgtg
     2101 cggggtggcg gccagcagaa aggccgtcag cagcaccacc gcggtgccat atgccgcaaa
     2161 gtcgacgcga taagccgcct tgccgtgttc gagactgaaa agacccatcg attcctctgc
     2221 cttgcattca cagcgccagc gccggtgcgt gattgtgagg gctcggcacg ggcgccggca
     2281 cggctcatgc gctggcgaac acacaggctg cgccg
//
LOCUS       DASVHM010000796         2250 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_201407, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000796 DASVHM010000000
VERSION     DASVHM010000796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201407"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(232..1581)
                     /locus_tag="VF308_14595"
     CDS             complement(232..1581)
                     /locus_tag="VF308_14595"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HEX7437934.1"
                     /translation="MLELVRHRDVSRRELVQAHLDRIARTNERVRAVVELRAEEALAE
                     ADTADRSHAGRDGLALDGIPMVTKDHFDVTGMKHTEGVPAKAERRSPADEVAIRRLRD
                     AGAIIIGKCNQPDYQIRWNTVSHLYGATHNPRDLAKSAGGSTGGDAAAVAAGMAPLGL
                     GVDYGGSIRVPASFCGIYGLRPSAGRIPAAPTLPPFDSTPTVDLMASIGPLARSVDDL
                     WRAYAVLAGADAGDPSSLPLPTGQRHGSGRKPRVVRMLDQTGAKVTSEIAARLDRTAQ
                     ILSDAGYEVVDGGIPHARRAPEVWAELIGTELLAAGLPAFGNELGASNRQHIEAMFGL
                     FNLGSDVRRYLDAFVERRAIARETAQWMEENPLVLAPVAGMATPPLDFDHMLDERQTI
                     ELFDRMRNVPWVNLLGLPSVALPNGIQLVARRFREAEAIQAAATVEQVIGSASVATM"
     gene            complement(1626..>2250)
                     /locus_tag="VF308_14600"
     CDS             complement(1626..>2250)
                     /locus_tag="VF308_14600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018913060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437935.1"
                     /translation="SLIALQRYAADDRRAYTYWAALVTMAALAWLVFFMLRGKVGAAA
                     QAIRDNEEAAASIGIRVLPSKRLIFVLSAFGCAAAGALWVATSITFQPKTYFSVQWSA
                     YMIFMVLVGGIGTYEGPILGAVLFFTIETLFGATGVTYLIGLGATAMLFALLLPRGIW
                     GEVEHRLGLQLLPIGYQLKLGADDPGRSGPPRSRHASATTPTTRPTE"
BASE COUNT          374 a          760 c          750 g          366 t
ORIGIN      
        1 cgagggagac tccacccccg atgtgttcat accgcagatg atcgagctgc atcgccaggg
       61 ccgcttcccg ttcgacaagc ttgtgacctt ctatcctttc gagagaatca acgacgcttt
      121 caacgattcc gagagcggca aggtggtcaa gccggtcgtg cgcatgccca agtagggctg
      181 cgaccgcatc agccgacgcc gcttgacacg ccgccagcgc gtgtgcgcca actacatcgt
      241 cgcgacggat gcgctgccaa tcacctgttc gaccgtcgct gcggcctgga tcgcttcagc
      301 ttctcggaag cggcgcgcga caagctggat gccattgggg agcgccacgc tgggcaagcc
      361 gagcagattg acccacggaa cattgcgcat gcggtcgaac agctcgatgg tctgccgctc
      421 gtcgagcatg tgatcgaagt caagcggcgg cgtcgccatg ccggcgactg gcgcgagtac
      481 cagggggttc tcctccatcc actgggccgt ctcgcgcgcg atcgcgcgcc gttcgacgaa
      541 cgcatcgagg tagcgtcgga cgtccgaccc gaggttgaac agtccgaaca tcgcttcgat
      601 gtgctggcgg ttgctggcgc cgagttcgtt gccgaaagcc ggcagcccgg ccgccagtag
      661 ctctgtgccg atcagctcgg cccagacctc gggcgcccga cgtgcatgcg ggatccctcc
      721 atcaaccact tcgtagccgg cgtcggacag aatctgagcc gtgcgatcga gacgcgcggc
      781 gatttctgac gtcaccttcg caccggtctg gtccagcatg cgcacgacgc ggggcttgcg
      841 cccgctgcca tggcgctggc cggtcggcag cggcagggat gacgggtcac cggcatccgc
      901 gccggccagc acggcatagg cgcgccagag gtcgtcgaca gaccttgcaa gcgggccgat
      961 cgaggccatc agatcgaccg tcggggtgct gtcgaacggc ggaagcgtcg gcgccgccgg
     1021 tatgcgaccg gcggacgggc gcagcccgta gatgccgcag aacgatgccg gcacgcggat
     1081 cgagccgccg tagtcgacgc cgagaccgag cggtgccatc cccgcggcca cggccgccgc
     1141 atcgccgccg gtcgagcctc ccgcggactt cgcgaggtcc cgcgggttgt gcgtcgcgcc
     1201 gtacagatgg ctcacggtgt tccagcgaat ctggtagtcc ggctggttgc acttgccgat
     1261 gatgatcgcg ccggcgtcgc gcaggcggcg tatcgccact tcgtcggccg gcgagcggcg
     1321 ctcggccttg gctggcacgc cttcggtgtg cttcatcccg gtgacgtcga agtggtcctt
     1381 tgtgaccatc gggatgccgt ctagcgccaa accgtcgcga cccgcgtgtg agcggtcagc
     1441 cgtgtcggcc tcggccagcg cttcttcggc gcgcagctcg acgacggcac gtacccgttc
     1501 gttcgtccgc gcgatgcggt cgaggtgcgc ttgcacgagt tcgcgtcggc tcacatcgcg
     1561 atgacgcacg agttcgagca tcgagcccgc cgtgaggctg cacaggtccg tagtcatggg
     1621 aaggctcatt ctgtcggcct ggttgtcggt gtcgtggccg acgcgtggcg gcttcgcggc
     1681 ggcccgctcc gtcccggatc gtctgcccct aacttgagct ggtagccgat cggcagcagc
     1741 tgcagcccca gccggtgttc gacctcaccc cagatgccac ggggcagcag cagcgcaaac
     1801 agcatcgccg tcgcacccaa accgatcagg tacgtgacgc cggttgcgcc gaagagagtc
     1861 tcgatcgtga agaacaggac cgcgccgagg atcggcccct cataggtgcc gatgccgccg
     1921 accagcacca tgaaaatcat gtaggcgctc cactggacac tgaaataggt cttcggctgg
     1981 aacgtgatcg aggtggcgac ccacagcgct ccggcggccg cgcagccgaa cgccgacaga
     2041 acgaagatca gccgctttga cggcagaaca cgaatgccga tcgacgcggc cgcctcctcg
     2101 ttgtcacgga tcgcctgggc ggcggcgccc accttgccgc gcagcatgaa gaacaccagc
     2161 cacgcgagcg ctgccatcgt cacgagcgcc gcccagtagg tgtaggcgcg ccggtcatcg
     2221 gcggcgtagc gttgcagcgc gatcagcgac
//
LOCUS       DASVHM010000797         2329 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1069702, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000797 DASVHM010000000
VERSION     DASVHM010000797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2329
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1069702"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..423
                     /locus_tag="VF308_14605"
     CDS             <1..423
                     /locus_tag="VF308_14605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437936.1"
                     /translation="VGASRTDKVGASVTQSIGAGLTQSVGGAWNMTASGPVTITASAG
                     LTIVSPAGNRTIDNIFDKVGGFLTQKFGAQSTVTGMTYQATGVAIAQSASKVETIGTS
                     HVATALNYEVKGVNMAYVVLKCEKASFEIKTADAHIIA"
     gene            433..>2329
                     /locus_tag="VF308_14610"
     CDS             433..>2329
                     /locus_tag="VF308_14610"
                     /inference="COORDINATES: protein motif:HMM:NF021456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2169 domain-containing protein"
                     /protein_id="HEX7437937.1"
                     /translation="MKTIKPGAVALLTRTVEYRGRFRFIVTPMLFVTLDGHLRIRGEA
                     ALWQFVAEELGVETALDACMPKVRGEYIVQARASPPGGPAPSCAIRARCADKQKTLVV
                     FGERHWRGNVPSAPQPFFDMALGWKHGYGGAGFGHNLEGIGHAKPVDPAAPWSLPQVE
                     YPHDPSLRPGKVVRPAGFGARDAAHPERAALIGTYDDEWLKTDYPGLARDLDWRHFNV
                     TPEDQWLDLPIAPDAPWEFEHLHPTRPYMSGKLPGIVPRCFITRLADDQPRCEEIPTQ
                     LETVLFFPHRECAVLISRGSVEVGEEDAAEIKLLLAAAEWQGESRPLAHYAQAIEKRL
                     DPATGHFLMLKEDDLLPGGMDERYSVEQFVSAPLADPRPLLGENLKRRQRSEIEGARA
                     TVASHGIDPDDGHAPSLPVAAEALPKRLEDLPIVLAQMHAQAEAGKAELAALEKKSDA
                     ARRAVFADLGMDYGVIEKEYSATPKGPPAFSAQAQFDTLAGVRATLAARQGAVAEIDQ
                     YLEDPLFRERMHTAERQSKEAYRLSAHLQDAVDPMPNDRVEWIRERAGQHLQRGGSFA
                     AIDLTAANLAGMDFAGCDFTAALLEGVDFSGCNLAGCRFDKAVLARANLAGASLVGAS
                     LREANLGE"
BASE COUNT          404 a          819 c          777 g          329 t
ORIGIN      
        1 gtcggcgcct cgcgcaccga taaggtcggc gcctcggtga cgcaatcgat cggcgcgggc
       61 ctgacgcaaa gcgtcggcgg cgcatggaac atgaccgcct cgggcccggt cacgatcacc
      121 gccagcgccg gcctgacgat cgtctcgccg gcaggcaacc gcaccatcga caacatcttc
      181 gacaaggtcg gcggcttcct gacgcagaag ttcggcgccc agagcaccgt gaccggcatg
      241 acctaccaag ccaccggcgt cgccatcgcg cagagcgcct cgaaggtcga gacgatcgga
      301 acgtcgcacg tggccacggc gctgaactac gaggtcaagg gcgtcaacat ggcctacgtc
      361 gtcctcaagt gcgagaaagc gtcgttcgag atcaagacgg ccgatgcgca catcattgcc
      421 tgaacgcggc acatgaagac gatcaagccg ggcgcggtgg cgctgctcac ccgcacggtc
      481 gagtaccgcg gccgctttcg cttcatcgtc acgccgatgt tgttcgtgac cctcgacggg
      541 cacctgcgga tccgcggcga agcggcgctt tggcaattcg tcgccgaaga gctcggcgtc
      601 gagacggcgc tcgatgcctg catgcccaag gtgcgcggcg agtacatcgt tcaggcccgc
      661 gccagcccgc ccggcgggcc ggcgccctcc tgcgccatcc gggcgcgctg cgcggacaag
      721 caaaagaccc tggtggtctt cggtgagcgc cactggcgcg gcaacgtccc cagcgcgccg
      781 cagcccttct tcgacatggc cctcggctgg aagcacggct acggcggcgc cggcttcggc
      841 cacaacctcg aggggatcgg ccacgcgaag ccagtcgatc cggcggctcc gtggagcctg
      901 cctcaggtcg agtatccgca cgatccgtcg ctgcgtccgg gcaaggtcgt ccgccctgcc
      961 ggcttcggcg cacgcgatgc cgcgcatccc gagcgtgccg cgttgatcgg cacctatgac
     1021 gacgaatggc tgaagacgga ttaccccggg ctcgcgcgcg acctggactg gcgccacttc
     1081 aacgtgacgc cggaagacca atggctcgac ttgccgatcg cgcccgacgc gccctgggaa
     1141 ttcgagcacc tgcacccgac ccggccatac atgagcggca agctgccggg catcgtcccg
     1201 cgctgcttca tcacgcgcct ggccgacgat cagccgcgct gcgaggaaat tccgacgcag
     1261 ctcgagaccg ttctcttctt tccccatcgc gaatgcgccg tgctgatcag ccgaggcagc
     1321 gtagaggtcg gcgaagagga cgcggcggag atcaagctgc tgctcgccgc ggccgagtgg
     1381 cagggcgagt cgcgaccgct cgcgcactac gcccaagcca tcgagaagcg gctcgacccc
     1441 gcgaccggac atttcctgat gctcaaggaa gatgacctgc tcccgggcgg catggacgag
     1501 cgctacagcg tcgagcagtt cgtcagcgcg ccgctcgccg atccgcggcc cttgctcggc
     1561 gagaacctga agcggcgcca acgttcggaa atcgaaggcg cgcgcgccac cgtcgccagc
     1621 cacggcatcg acccggacga cggccacgcg ccgagcctgc ccgttgccgc cgaagcactg
     1681 cccaagcggc tcgaggacct gccgatcgtc ctggcgcaga tgcacgccca ggcggaagcc
     1741 gggaaagcgg agctggcggc gctcgagaag aagtccgatg ccgcacggcg cgccgtgttc
     1801 gccgacctgg ggatggacta tggcgtgatc gagaaggagt actcggccac gccgaagggc
     1861 ccgcccgcgt tcagcgcgca ggcgcagttc gacaccctgg ccggcgtgcg cgccacgctg
     1921 gcggccaggc agggggcggt ggccgagatc gatcagtatc tcgaagaccc gctgttccgc
     1981 gagcgaatgc acactgccga acgacagtcg aaagaggcgt atcggctcag cgcgcacctt
     2041 caggacgccg tcgatccgat gccgaacgac cgggtcgaat ggattcgcga gcgcgccggc
     2101 cagcacctgc aacgcggcgg gtctttcgcc gccatcgatc tcaccgccgc gaacctcgcc
     2161 gggatggatt tcgctggctg cgatttcacc gcggcactgc tcgaaggcgt cgacttcagc
     2221 ggctgcaacc tggctgggtg ccggttcgat aaggccgtgc tggcacgcgc gaatctcgcc
     2281 ggcgcgagcc tggtcggcgc gagccttcgc gaagccaatc tcggcgagg
//
LOCUS       DASVHM010000798         3394 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_345238, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000798 DASVHM010000000
VERSION     DASVHM010000798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3394
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345238"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1482)
                     /locus_tag="VF308_14615"
     CDS             complement(<1..1482)
                     /locus_tag="VF308_14615"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013395047.1"
                     /note="catalyzes the conversion of citrate to isocitrate
                     and the conversion of 2-methylaconitate to
                     2-methylisocitrate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase B"
                     /protein_id="HEX7437938.1"
                     /translation="MLQAYRQHVAERAALGIPPLPLSAAQTAALVELLKAPPAGEEAT
                     LLELITQRVPAGVDDAAKVKASYLAALAHGSESCALIGRKKATELLGTMLGGYNITPL
                     INLLEDPATAETAAAALKKTLLMFDQFHDVQEKAEKGNPFALSVLHSWADAEWFTSRP
                     ELPKSILVSVFKVSGETNTDDLSPAPDAWSRPDIPLHALAMLKNPRPGIVPEEDGTRG
                     PIRFIEELRARGHLVAYVGDVVGTGSSRKSATNSVLWFTGADIPFVPNKRFGGVCLGA
                     KIAPIFYNTMEDAGALPIELDVSQMEMGDVIELRPYEGKALKNGTVIAEFKVKSQVLF
                     DEVRAGGRIPLIIGRGLTTKAREALGLAPSTLFRLPHNPADTGKGYTLAQKIVGRACG
                     LPEVAGIQHGVRPDTYCEPRMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHT
                     AAYPKPVDVKMHHELPAFISTRGGVSLRPGDGVIHSWLNRLLLP"
     gene            complement(1527..1931)
                     /locus_tag="VF308_14620"
     CDS             complement(1527..1931)
                     /locus_tag="VF308_14620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HEX7437939.1"
                     /translation="MIAVDSSVLIELLSNAAHADAAESALRDALARGPVVVCDVVVAE
                     ICSSLQGGDQAMQALEDMGIAYSVVEQKSALRAGEMQRRYRGRGAGRARQVPDFIVGA
                     HALLQCNALISRDAGFFRDYFKGLKVIAPKAR"
     gene            complement(1939..2184)
                     /locus_tag="VF308_14625"
     CDS             complement(1939..2184)
                     /locus_tag="VF308_14625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HEX7437940.1"
                     /translation="MQATVAERGQITLPKAVRDALGLTKGTQLKVELDGSRIILRKSV
                     DDAISRARGKFKLDGFDSVDDAMRAVRGRAPGDPLDV"
     gene            complement(2278..2859)
                     /locus_tag="VF308_14630"
     CDS             complement(2278..2859)
                     /locus_tag="VF308_14630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437941.1"
                     /translation="MTTSFPAFTSVLHGAALVALCLLGTSVPAADAPAKAAKPPAAKV
                     AKKPAAKPVETGPADASAEQIDAAERVYYGVYDCEFNQTVDIEKNTKYAAYVNVKSGK
                     SAWIMKPVLSSTGAIRLEDVKGETLMVQIASKSMLLNVKTAHRIVDDCISPKQHELIE
                     AAKAAKAGEAVRAAVEAAGALAAAPTGAASAPK"
     gene            complement(2977..>3394)
                     /locus_tag="VF308_14635"
     CDS             complement(2977..>3394)
                     /locus_tag="VF308_14635"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015913700.1"
                     /note="catalyzes the oxidation of malate to oxaloacetate;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEX7437942.1"
                     /translation="SPTMYADYRFATIDGQPVKAMINDDAWNKDVFLPTVGKRGAAII
                     EARGLSSAASAANAAIGHMRDWALGSQGKWVTMGIASDGQYGIPRDVMFGFPVTTAGG
                     EYKLVEGLAMDAFSQQRIDLTLKELLEEQEGVKHLL"
BASE COUNT          506 a         1112 c         1155 g          621 t
ORIGIN      
        1 gggcagcagc agccggttca gccacgaatg gatcacgccg tcgcccggcc gcaggctcac
       61 gccgccgcgc gtgctgatga aggccggcag ctcgtgatgc atcttcacgt cgaccggctt
      121 cggataggcc gccgtgtggc agaagctctg catcacgagg tcggcggaga agccgaggca
      181 ggcgaggtcc ttgagttcgt cgcgcgtcat cggaccggtc gtgtcctgcg acccgaccga
      241 ggtcatgcgc ggctcgcagt aggtgtcggg gcgaacgccg tgctggattc ccgccacctc
      301 gggaaggccg caggcgcggc cgacgatctt ctgggccagc gtgtagccct tgccggtatc
      361 ggccgggttg tgcggcaggc gaaacagcgt cgagggcgcg aggccgagcg cttcgcgcgc
      421 cttggtcgtg agaccgcggc cgatgatgag cggaatgcgg ccgccggcgc gcacctcgtc
      481 gaacaggact tggctcttga ccttgaactc ggcgatcacg gtgccgttct tgagcgcctt
      541 gccttcgtag gggcgcagtt cgatcacgtc gcccatttcc atctggctca cgtcgagttc
      601 gatcggcagc gcgccggcgt cttccatcgt gttgtagaag atcggcgcga tcttggcccc
      661 gaggcagacc ccgccgaagc gcttgttcgg gacgaagggg atgtctgcgc cggtgaacca
      721 cagcaccgag ttggtcgccg acttgcggct cgagccggtg ccgaccacgt cgccgacata
      781 ggcgaccagg tggccgcgtg cgcgcagctc ctcgatgaag cggatcgggc cgcgcgtgcc
      841 gtcctcctcg ggcacgatgc cggggcgcgg attcttcagc atcgcgagcg cgtgcagcgg
      901 gatgtcgggg cggctccagg cgtccggcgc gggcgagagg tcgtcggtgt tggtttcgcc
      961 gctgaccttg aagacgctga cgaggatgct cttcggcagc tccgggcgcg acgtgaacca
     1021 ctcggcatcg gcccagctgt gcaggaccga tagcgcgaac gggttgccct tctcggcctt
     1081 ttcctggacg tcgtggaact ggtcgaacat cagcagcgtc ttcttcagcg ccgcggcggc
     1141 cgtctcggcg gtggccggat cctcgagcag gttgatcagc ggtgtgatgt tgtagccgcc
     1201 gagcatcgtg ccgagcagtt cggtcgcctt cttgcggccg atcaaggcgc agctttcgga
     1261 gccatgggcg agcgcggcga ggtagctggc cttgaccttc gcggcatcgt cgacgccggc
     1321 cggcacgcgc tgcgtgatca gctcgagcag cgtcgcttcc tcgcccgcgg gcggcgcctt
     1381 gagcagttcg accaatgcgg cggtctgcgc cgccgacagc ggcagcggcg gaatgccgag
     1441 cgctgcgcgc tcggcgacgt gttggcgata cgcttgaagc atcggaaccc cctttccttg
     1501 ttggagacct gtggccgtcg gacccgtcag cgcgccttcg gggcgatgac tttgaggccc
     1561 ttgaaatagt cgcgaaaaaa cccggcgtcg cggctgatca gcgcgttgca ttggaggagc
     1621 gcgtgggccc cgacgatgaa atcgggcacc tggcgcgcgc gcccggcgcc ccgaccgcga
     1681 tagcggcgct gcatctcgcc ggcacgcagc gcggacttct gttcgacgac gctgtacgcg
     1741 atgcccatgt cttcgagcgc ctgcatggcc tggtcgccgc cctgcagcga gctgcagatc
     1801 tcggcgacga cgacatcgca gacgacgacc ggaccgcgcg cgagcgcatc gcgcaatgcc
     1861 gactcggcgg catcggcgtg cgccgcattg ctgaggagct cgatcagcac cgatgaatcg
     1921 acggcaatca tgcgtcgctc agacatcgag cgggtcgccg ggggcccgtc cccgaaccgc
     1981 gcgcatcgcg tcgtcgaccg agtcgaagcc gtcgagcttg aacttgccgc gcgcccgcga
     2041 gatcgcgtcg tcgacgctct tgcgcaagat gatccggctg ccgtcgagct cgaccttcag
     2101 ctgggtgccc ttggtcagcc cgagcgcgtc ccgaaccgct ttcggcaggg tgatctggcc
     2161 gcgctcggcc actgtcgctt gcatcgcatg ccctttcagg tatgcgagaa gtatacatac
     2221 ttttcttggc cgacggcctc gttcctcggc cgtttgcggg cactcggtgc gaactcgcta
     2281 tttcggcgcg gaagcggcgc ccgtcggggc cgcggccaat gctcctgccg cctccacggc
     2341 ggccctgacc gcttctcctg ccttcgcagc cttggccgct tcgatcaact cgtgctgctt
     2401 cgggctaatg cagtcgtcga cgatgcggtg cgcggtcttc acgttcagca gcatcgattt
     2461 gctggcgatc tgcaccatca gcgtctcgcc cttgacgtcc tcgagccgga tcgcgccggt
     2521 ggacgacagc accggcttca tgatccacgc cgacttgccg gatttgacgt tgacataggc
     2581 cgcatatttg gtgttcttct cgatgtcgac cgtctggttg aactcgcagt cgtagacgcc
     2641 gtagtagacc cgctcggcgg catcgatctg ctcggccgat gcgtcggccg ggccggtttc
     2701 gaccggcttg gcggctggct tcttggcgac cttggcggcg gggggtttgg cggccttggc
     2761 cggcgcatca gccgccggga ccgaagtgcc gaggaggcag agcgccacga gtgccgcgcc
     2821 atgcagcacg gaagtgaatg ccggaaagga agtggtcatg aatcaggcct tgcagatcgg
     2881 gaggcacgca ttgtcgagcg gcttcgcccg cgcaaacgtc tttgtttgca acaaagcggc
     2941 gaaaccgcca agagttgccc gcgcccggcc ctcggcctac agcaagtgct tcacgccttc
     3001 ctgttcttcg agaagttcct tgagcgtcag gtcgatgcgc tgctggctga aggcgtccat
     3061 cgcgagacct tcgacgagct tgtactcgcc gcctgcggtc gtgaccggaa aaccgaacat
     3121 cacgtcccta gggataccgt actggccgtc cgacgcgatg cccatcgtca cccatttgcc
     3181 ctgactgccg agggcccagt cgcgcatgtg accgatggcg gcgttcgcgg ccgacgccgc
     3241 ggaagacagg ccgcgcgcct cgatgatcgc ggcgccgcgc ttgccgaccg tcggcaggaa
     3301 cacgtccttg ttccatgcgt cgtcgttgat catcgccttc accggctgac cgtcgatcgt
     3361 ggcgaagcgg tagtcggcat acatggtggg cgaa
//
LOCUS       DASVHM010000799         1668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_130258, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000799 DASVHM010000000
VERSION     DASVHM010000799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130258"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1263
                     /gene="ftsH"
                     /locus_tag="VF308_14640"
     CDS             <1..1263
                     /gene="ftsH"
                     /locus_tag="VF308_14640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018912126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEX7437943.1"
                     /translation="AGEAKVPFFSISGSDFVEMFVGVGAARVRDMFEQAKKSAPCIIF
                     IDEIDAVGRHRGAGLGGGNDEREQTLNQMLVEMDGFETNVGVIVMAATNRPDILDPAL
                     LRPGRFDRQVFVSLPDVRGREQILNVHMRKVPVGQDIRADILARGTPGFSGADLANLV
                     NEAALFAARRSGRVVEMVDFEKAKDKIMMGPERKSMIMPEEERRNTAYHESGHALVAK
                     LMPKTDPVHKVTVIPRGRALGVTMQLPEGDRYSLDKDRMLSTISVLFGGRIAEEVFMH
                     QMTTGASNDFERATQIARDMVTRYGMTDELGPMVYAENEGEVFLGRSVTKQVNVSERT
                     MQKVDSEIRRIIDEQYSIARKLIEDNQDKIHAMAAALLEFETIDSDQIDDIMGGKPPR
                     PPKDWTPSPAKPVSGVPPVTPGSAPAAA"
     gene            1322..>1668
                     /locus_tag="VF308_14645"
     CDS             1322..>1668
                     /locus_tag="VF308_14645"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013519321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEX7437944.1"
                     /translation="MFWQTSRFRIDLSRPRVMGIVNVTPDSFADRPADPAAAIARCAQ
                     LVDEGADILDIGGESSRPGAEPVARELELERVLPVLAEALKLGVPVSVDTVKPEVMRA
                     VLDRGADIGNDINA"
BASE COUNT          297 a          574 c          546 g          251 t
ORIGIN      
        1 gccggcgagg ccaaggtgcc gttcttctcg atctccggct ccgacttcgt cgagatgttc
       61 gtcggcgtcg gcgcggcccg agttcgcgac atgttcgagc aggcgaagaa gagcgcgccc
      121 tgcatcatct tcatcgacga gatcgacgcg gtcggccggc accgcggtgc gggtctgggc
      181 ggcggcaacg acgagcgcga gcagacgctg aaccagatgc tcgtcgaaat ggacggcttc
      241 gagaccaacg tcggcgtgat cgtgatggcg gcgacgaacc ggcccgacat cctcgacccg
      301 gcgctgctgc ggcccggccg cttcgatcgc caggtcttcg tgagcctgcc cgacgtgcgc
      361 ggccgcgagc agattctcaa tgttcacatg cgcaaggtgc cggtcggcca ggacatccgt
      421 gccgacatcc tggcgcgtgg cacgcccggc ttttcgggcg ccgatctggc caacctcgtc
      481 aacgaggccg cgctcttcgc ggcgcgccgc agcggccgtg tcgtcgagat ggtcgacttc
      541 gagaaggcca aggacaagat catgatgggc cccgagcgca agtcgatgat catgcccgag
      601 gaagagcgcc gcaacaccgc gtaccacgag tccgggcacg cgctcgtcgc caagctgatg
      661 cccaagaccg acccggtcca caaggtcacc gtcattccgc gcggccgcgc gctcggcgtg
      721 acgatgcagt tgcccgaagg cgaccgttac agcctcgaca aggaccgcat gctgagcacg
      781 atctcggtgc tgttcggggg gcggatcgcc gaagaggtgt tcatgcacca gatgaccacc
      841 ggtgccagca acgacttcga acgcgcgacc cagatcgccc gcgacatggt cacgcgctac
      901 ggcatgaccg atgaactcgg gccgatggtc tacgccgaga acgaaggcga ggtcttcctc
      961 ggccgttcgg tcaccaagca ggtcaacgtc tcggagcgga cgatgcagaa ggtcgactcg
     1021 gagatccgcc gcatcatcga cgagcaatac tcgatcgccc gcaagctgat cgaggacaac
     1081 caggacaaga tccacgcgat ggcggcggcg ctgctcgagt tcgagaccat cgattcggac
     1141 cagatcgacg acatcatggg cggcaagccg ccgcgcccgc ccaaagactg gaccccgtct
     1201 cccgccaagc ccgtatcggg cgtgcccccg gtgactccgg gcagtgcgcc cgccgcggcg
     1261 tgacccggca gcgctgaaac ctcgaacggg gccgcggccc cgttttcctt gcctgtgttc
     1321 catgttctgg caaacgtccc gcttcaggat cgacctctcc cggccccggg tgatggggat
     1381 cgtcaatgtc acaccggatt ccttcgccga tcgcccggcc gatccggccg ctgcgatcgc
     1441 gcgctgcgcg cagctggtcg acgaaggcgc ggacatcctc gacatcggcg gcgaatcgag
     1501 ccgccccgga gccgagccgg tggcgcgcga gctcgaactc gagcgcgtgc tcccggtgct
     1561 cgccgaagcg ctcaaactcg gcgtgccggt gtcggtcgac acggtcaaac ccgaagtgat
     1621 gcgcgccgtg ctcgatcgcg gcgccgacat cggcaatgac atcaacgc
//
LOCUS       DASVHM010000800         1794 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_420015, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000800 DASVHM010000000
VERSION     DASVHM010000800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420015"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..576
                     /gene="fabG"
                     /locus_tag="VF308_14650"
     CDS             <1..576
                     /gene="fabG"
                     /locus_tag="VF308_14650"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEX7437945.1"
                     /translation="RGIVLDVTDGAAVGAAIDAVVKESGALHVLVNNAGITRDMLSMR
                     MKDDDWHAVLATNLTAVFRASRAAIRPMMKQRYGRIVNITSVVGASGNPGQANYAAAK
                     AGVAGMTRSLAREVGSRGITVNCVAPGFIETDMTKSLPEAQASGLLAQIPLGRLGQPG
                     EIAHAVAFLASPEASYITGTELHVNGGMLMS"
     gene            692..934
                     /gene="acpP"
                     /locus_tag="VF308_14655"
     CDS             692..934
                     /gene="acpP"
                     /locus_tag="VF308_14655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007830471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEX7437946.1"
                     /translation="MSDIEARVKKIIAEQLGVPEADVANEKAFVADLGADSLDTVELV
                     MALEDEFGIEIPDEEAEKITTVQLAIDYAQKHQKAA"
     gene            965..>1794
                     /locus_tag="VF308_14660"
     CDS             965..>1794
                     /locus_tag="VF308_14660"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012207067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEX7437947.1"
                     /translation="MSSRRVVVTGLGLISPVGNSVDEGWQNLLAGRSGIADITKFDAS
                     AFSCRFAGEVKGFQVEEYFPAKDARHMDTFIHYGLAASIQAIRDAGLPTKDELSQEEA
                     ERIGCLIGSGIGGLPLIEETKAELEKRGPRRITPFFVPASIINMISGHVSIMFGFQGP
                     NLAIVTACTTGLHSIGMAGRLIEYGDADVMIAGGSEATVSPLGVGGFAAARALSTRND
                     DPQTASRPWDKDRDGFVLGEGAGVVVLEEYEHAKRRGAKIYAELVGFGMGADAFHMTA
                     P"
BASE COUNT          320 a          616 c          594 g          264 t
ORIGIN      
        1 cgcggcatcg tcctcgacgt gaccgacggc gccgcggtcg gcgccgccat cgatgccgtc
       61 gtcaaggaat cgggcgccct gcacgtgctc gtcaacaacg ccggcatcac ccgcgacatg
      121 ctgtcgatgc gcatgaagga cgacgactgg catgccgttc tcgccaccaa cctgaccgcc
      181 gtctttcgcg ccagccgcgc ggcgatccgg ccgatgatga agcagcgcta cgggcgcatc
      241 gtcaacatca cgtcggtcgt cggtgcgagc ggcaacccgg gccaggccaa ttacgccgcg
      301 gccaaggcgg gcgtcgcggg aatgacgcgc tcgctggcgc gtgaggtcgg cagccgcggc
      361 atcacggtca attgcgtcgc gcccggattc atcgagaccg acatgacgaa gtcgctgccc
      421 gaggcgcagg cctcgggcct gctggcccag atcccgctcg gccggctcgg ccagccgggc
      481 gagatcgccc acgccgttgc cttcctcgcc tcgcccgaag cgagctacat caccggcacg
      541 gagctgcacg tcaacggcgg catgctgatg agctgagcgg cgcggccagc cgagcgcagc
      601 acaggcgaac cggcatggcc ccgcaagccg tcccgcggat tgtcaagccg tagaatccgc
      661 gtctactttt tcccacactc ctggaggagt catgagcgac atagaagcac gagtcaagaa
      721 gatcatcgcc gagcagttgg gcgttcccga ggccgacgtg gcgaacgaaa aggcgttcgt
      781 cgccgacctg ggcgcagact cgctcgacac ggtcgaactc gtgatggcgc tcgaagacga
      841 gttcggcatc gagatccccg acgaagaggc cgagaagatc acgaccgtgc agctcgcgat
      901 cgactacgcg cagaagcacc agaaggcggc ctgagccggc ccaggtccga agtttcgttc
      961 gcacatgagc tcgcgccgcg tcgtcgtcac cgggctcggc ctgatcagcc cggtcggcaa
     1021 cagcgtcgac gagggctggc agaacctgct ggcgggccgc tccggcatcg ccgacatcac
     1081 caagttcgac gcgtccgcgt tttcctgccg cttcgccggc gaggtcaagg gcttccaggt
     1141 cgaggagtac ttcccggcca aggacgcgcg gcacatggac accttcatcc attacggcct
     1201 cgcggcgtcc atccaggcga tccgcgacgc gggcctgccg accaaagacg agctgagcca
     1261 ggaagaagcc gaacggatcg gctgcctgat cggctcgggt atcggcggcc tgccgctgat
     1321 cgaggaaacc aaggccgagc tcgagaagcg tggcccgcgc cggatcacgc cgttcttcgt
     1381 gccggcatcg atcatcaaca tgatctccgg ccacgtctcg atcatgttcg gcttccaggg
     1441 gccgaacctc gccatcgtca cagcctgcac gaccggcctg cattcgatcg gcatggccgg
     1501 caggctgatc gaatacggcg atgccgacgt gatgatcgcc ggcggctcgg aggcgaccgt
     1561 gtcgccgctc ggcgtcggcg gcttcgctgc ggcgcgcgca ctttcgacgc gcaacgacga
     1621 tccgcagacc gcgtcgcgcc cgtgggacaa ggaccgcgac ggcttcgttc tcggcgaagg
     1681 cgcaggcgtg gtcgtgctcg aggaatacga gcatgcgaaa cggcgcgggg cgaagatcta
     1741 cgccgaactg gtcggcttcg gcatgggcgc cgatgccttc cacatgacgg cgcc
//
LOCUS       DASVHM010000801         4178 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1141793, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000801 DASVHM010000000
VERSION     DASVHM010000801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4178
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1141793"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1285
                     /locus_tag="VF308_14665"
     CDS             <1..1285
                     /locus_tag="VF308_14665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEX7437948.1"
                     /translation="ACAQPAAPAQPAAVAAPTAASAPVSLSARKVYEQARSQLVQIRT
                     VLKGRASQTSVGSGFFVSREGHIVTNFHVVSEAALKPDRHDLVYVTADGREAPLQILQ
                     LDVLHDLALLKAGDSAGRTFDALGFRPEARPLSQGERIYSLGNPLDVGFAVAEGTYNG
                     VVKRSFYPQIFFGGALSAGMSGGPALDQEGQVVGINVARRVDGEQVSFLVPAAFASAL
                     LARGRDARPITAPAYAIVDEQLMVHQAALAERFIQQGWKSATHPRYRVPVPPDVFMRC
                     WGSSEPSRTGGLDVERSDCAMDTRIFVGDFTTGAIALRHESYDGSKLGPLRFAARYSQ
                     SFRNESFVRLSPEHQTKPQCHEDFVDRAGLALRAVVCMRAYKKLPQLYDLSVLVATLD
                     QSEGGVQGRLDAQGFSFENAQRLSRHYIEAYGWAR"
     gene            1273..2334
                     /locus_tag="VF308_14670"
     CDS             1273..2334
                     /locus_tag="VF308_14670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEX7437949.1"
                     /translation="MGPLDSTSPSATRPVARALLEVIDRDGHVRQAWPIHAWPARVGR
                     ALDNEVVLTDPHVAPHHFSLDTTDDAGLALDIGATLNGVTLGTSRFAAGTHVVLARDA
                     DSIDLVAGRTRLRLRLADAALAPEMPLVALAVRHLRLAPTLVIAALLLAGLAFSTYLD
                     SDPDNFTRAAGNALLAALSGAAIWCGAWALLSKTITRQGHFGWHLRVFTIAGLALLAL
                     TAVPSLLAFSLSWPWLTDFSFIATFAVGATALYFHLLAVEPARPHLLRWVVATGAVVG
                     VALTLWFNVQRTSRVGDELYMSHLFPPSLRLARPLATDRFIDGLAPLHALLDKKSKEP
                     ASADGLGAGPAGNQNDDDE"
     gene            2324..3091
                     /locus_tag="VF308_14675"
     CDS             2324..3091
                     /locus_tag="VF308_14675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018905084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7437950.1"
                     /translation="MTNEPNDAPRTVLVTGGGRGIGAATSWLCAQRGWSVAVNYASDR
                     GAAERIVDRILATGGRARALQADVSDEAQVLRLFEAIDREMAPLAGLVNNAGVVDQPG
                     RVDTMSLGRLERMFAINVYGSFLCAREAIKRMSTRHGGHGGAIVNLSSAAARLGAPGQ
                     YVDYAAAKGAIDVFTLGLAKEVATEGIRVNAVRPGIIETEIHASGGQPDRARQMAPLV
                     PMQRAGSAEEVAAAIAWLLSDASSYTTGAVIDVTGGR"
     gene            complement(3114..3971)
                     /locus_tag="VF308_14680"
     CDS             complement(3114..3971)
                     /locus_tag="VF308_14680"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEX7437951.1"
                     /translation="MAPPKLGDRITDQFARMTRAERSIASYMLGNLHLLPFENAAAIA
                     AKVGVSPMTVGRFLRSIGYSGIGEVKAELRDAALSPGLRISGRLERIRASSGVGEDLH
                     RNLQLEVNALVSVYEHVGTPLWNEAIARLASDDQVFVAGFQTVSGLASDFAARLQYLR
                     PGVSVLDGQDGTFADLLAGRSENPCLVLFEMRRYTKFSQLLAEKAQQRGIDLIVICDR
                     HCLWARDHSDLVFSVNTDSNLFWDNQTPFLSLTNLMFDHIVRQLQGAVDARLEAMAEL
                     QEHFGAFRA"
     gene            complement(3991..>4178)
                     /locus_tag="VF308_14685"
     CDS             complement(3991..>4178)
                     /locus_tag="VF308_14685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020652920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX7437952.1"
                     /translation="PFTNLFNMSGEPSMSVPLYWAPEGLPVGVMFSAGFGREDQLFRL
                     AGQLEQARPWFDRVPAL"
BASE COUNT          617 a         1537 c         1399 g          625 t
ORIGIN      
        1 cgcttgcgcg cagcccgccg cgccggcgca gcccgcggca gtcgcagcgc ccaccgcggc
       61 ctcggccccg gtctcgctct cggcgcgcaa ggtgtacgag caggcacgct cgcagctggt
      121 ccagatccgc accgtgctca aggggcgggc gagccagacc tcggtcggct cgggcttctt
      181 cgtctcgcgc gaaggccaca tcgtcaccaa tttccatgtc gtcagcgaag cggccttgaa
      241 gccggaccgt cacgacctgg tctacgtgac cgccgatggc cgcgaggcgc cgctgcagat
      301 cctgcaactc gacgtgctgc atgacctggc gctgctgaag gccggcgaca gcgccgggcg
      361 cacgttcgac gcgctcggct ttcgcccgga ggcgcgaccg ctctcgcaag gcgagcgcat
      421 ctattcgctc ggcaatccgc tcgacgtcgg cttcgcggtc gccgaaggca cctacaacgg
      481 cgtggtcaag cggagcttct atccgcagat cttcttcggg ggcgcgctga gcgccggcat
      541 gagcggcgga cccgcgctcg accaggaagg ccaggtcgtc ggcatcaacg tggcgcgccg
      601 ggtcgacggc gagcaggtga gttttctcgt gccggccgca ttcgcgagcg cgctgctggc
      661 gcgcgggcgc gatgcgcgac cgatcaccgc cccggcctac gccatcgtcg acgagcagct
      721 gatggtgcac caggcggcgc tcgccgaacg cttcatccag caaggctgga aatccgccac
      781 gcacccgcgc taccgcgtgc cggtgccgcc ggacgtgttc atgcgctgct ggggcagcag
      841 cgagccgtcg cgcaccggcg gcctcgacgt cgagcgctcc gactgcgcga tggacacccg
      901 catcttcgtc ggcgatttca cgaccggtgc gatcgcgctg cgccacgaga gctacgacgg
      961 ctccaaactg ggaccgctgc gcttcgcggc gcgctattcg cagagctttc gcaacgaatc
     1021 cttcgtgcgc ctttcgcccg aacaccagac caagccgcag tgccacgaag atttcgtcga
     1081 ccgcgccggc ctcgcgctgc gcgccgtggt ctgcatgcgc gcctacaaga agctgccgca
     1141 gctctacgac ctgtccgtcc tcgtggccac gctcgaccag tcggagggcg gcgtgcaggg
     1201 gcgcctcgac gcgcagggct tcagcttcga gaacgcgcag cggctgagcc gtcactacat
     1261 cgaggcctac ggatgggccc gctagacagc acgagcccgt cggccacgcg gcccgtggcc
     1321 cgggcgctgc tcgaagtcat cgaccgcgac ggccacgtgc gccaggcctg gccgatccat
     1381 gcctggccgg cccgcgtcgg gcgcgcgctc gacaacgagg tggtgctcac cgatccgcac
     1441 gtggcaccgc atcacttcag cctcgacacg acggacgatg cgggcctcgc gctcgacatc
     1501 ggcgcgaccc tcaatggcgt cacgctcggc accagccgct tcgccgcggg cacgcacgtg
     1561 gtcctcgcgc gcgatgccga ttcgatcgat ctcgtcgccg gtcgcacacg cctgcggctg
     1621 cgcctcgccg atgcggcgct ggcgccggaa atgccgctcg tcgcgctcgc ggtgcgccac
     1681 ctgcgtctcg cgcccacact ggtcatcgcg gcgctgctgc tcgccggcct cgccttcagc
     1741 acctacctcg acagcgaccc ggacaacttc acccgcgccg ccggcaacgc gctgctcgcc
     1801 gcgctgagcg gtgctgccat ctggtgcggc gcgtgggccc tgctctcgaa gaccatcacg
     1861 cgccagggcc acttcggctg gcacctgcgc gtgttcacga tcgccggcct cgcgctgctc
     1921 gcgctcaccg ccgttccgag cctgctcgcg ttctcgctgt cgtggccgtg gctcaccgat
     1981 ttcagcttca tcgcgacctt cgcggtcggc gcgaccgcgc tctacttcca cctgctggcg
     2041 gtcgaaccgg cgcggccgca cctgttgcgc tgggtcgtcg cgaccggggc ggtggtcggt
     2101 gtcgccctca cgctctggtt caacgtgcaa cgcaccagcc gcgtcggcga cgagctctac
     2161 atgagccacc tcttcccgcc gtcgctgcgc ctcgcccgac cgctcgccac cgaccgcttc
     2221 atcgacgggc tcgcgcccct gcacgccctg ctcgacaaga agtccaagga accggcgagc
     2281 gcagatggcc tcggcgccgg gccggccggc aaccagaacg acgatgacga atgagccgaa
     2341 cgacgcgcca cgcaccgtcc tggtcaccgg gggcggacgc ggcatcggcg cggccacctc
     2401 ctggctctgc gcgcagcggg gctggtcggt cgccgtcaac tatgcgagcg atcgcggcgc
     2461 cgccgagcgc atcgtcgacc ggatcctcgc gaccggcggc cgggcgcgcg cactgcaggc
     2521 cgacgtgtcc gacgaagccc aggtgctgcg cctcttcgag gcgatcgacc gggagatggc
     2581 gccgctcgcg ggactcgtca acaacgccgg cgtcgtcgac cagccgggtc gggtcgacac
     2641 gatgagcctc ggacgcctcg agcgcatgtt cgcgatcaac gtctacggct cgttcctctg
     2701 cgcgcgcgaa gccatcaaac gcatgtcgac gcgccacggc ggacacggcg gggcgatcgt
     2761 caatctttct tccgccgcgg cccggctcgg cgcgccgggg cagtacgtcg actacgcggc
     2821 ggccaagggt gcgatcgacg tgttcacgct cggcctcgcg aaggaggtcg cgaccgaggg
     2881 catccgcgtc aacgcggtcc gccccggcat catcgagacc gagatccacg cctcgggcgg
     2941 ccagcccgac cgcgcccggc agatggcgcc gctggtgccg atgcagcgcg ccggcagcgc
     3001 cgaggaagtc gccgcggcca tcgcctggct gctctcggac gcctcaagct acaccaccgg
     3061 cgccgtgatc gacgtgaccg gcgggcgctg agcccggcgg gcgcaaaccg cgctcaggcg
     3121 cggaacgccc cgaaatgctc ctgaagctcg gccatggcct cgagccgcgc gtcgaccgcg
     3181 ccctggagct gccgcacgat gtggtcgaac atcaggttcg tgaggctcag gaacggcgtc
     3241 tggttgtccc agaacaggtt gctgtcggtg ttgacgctga acaccaggtc gctgtgatcg
     3301 cgggcccaca ggcaatggcg gtcgcagatc acgatcaggt cgatgccgcg ctgctgcgcc
     3361 ttctcggcga gcagctggct gaacttcgtg tagcgcctca tttcgaacag caccaggcat
     3421 ggattttccg agcggcccgc gagcaggtcg gcgaacgtgc cgtcctgccc atcgagaacg
     3481 ctcacgccgg gccgcaggta ctggagccgc gctgcgaagt ccgaggcgag tccgctcacg
     3541 gtctggaagc cggcgacgaa gacctggtcg tccgaagcca gccgcgcaat ggcctcgttc
     3601 caaagcggcg tgccgacgtg ctcgtagacg ctgacgagtg cgttgacctc gagctgcagg
     3661 ttgcggtgca ggtcttcgcc aacaccgctg ctggcgcgga tgcgctcgag ccggccgctg
     3721 atcctgagcc cggggctcag ggccgcgtcg cgcagttcgg ccttgacctc gccgatgccg
     3781 ctgtagccga tcgaacgcag gaagcgcccg accgtcatcg ggctgacgcc gaccttggcg
     3841 gcgatcgccg ccgcgttctc gaacggcaac aggtgcaggt tgcccagcat gtagctcgcg
     3901 atgctgcgtt cggctcgcgt catgcgcgcg aactggtcgg tgatccggtc accgagcttg
     3961 ggaggcgcca tcgaacgtcg catccggatg tcagagcgca ggcacgcgat cgaaccaggg
     4021 tcgcgcctgc tcgagttgcc cggccaggcg aaacagctgg tcttcacggc cgaacccggc
     4081 actgaacatc acgccgaccg gcaagccctc cggcgcccag tacagcggca ccgacatgct
     4141 cggctcgccg ctcatgttga aaaggttcgt gaacggcg
//
LOCUS       DASVHM010000802         2971 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_852177, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000802 DASVHM010000000
VERSION     DASVHM010000802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2971
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_852177"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..896
                     /locus_tag="VF308_14690"
     CDS             6..896
                     /locus_tag="VF308_14690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019430764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX7437953.1"
                     /translation="MRGLMWAAAAGLIFAHLNALMRLLTLHLDPFQTQFLRYLFGMLV
                     MLPLVLRSGVRAYWPKQIGAQFARGAVHTLGLCLWFTALPRIALADMTAIGFTGPIFI
                     MVGAYFFFHEPMRWERWLASGIGLAGVAIVLAPKLSGSGGAYNLVMLASAPVFAASFL
                     LTKGLTRREGTGVIVVWQAISVTLFSLPLALFHWQTPSLVQWAGFAVCGLLGSSGHYC
                     LTRSFRSADISSTQSVKFLDLVWATGIGWLLFAEVPSQTTLIGGAVICAATIWIARRE
                     SRRGLVTAEELAKSGESPAA"
     gene            981..1409
                     /locus_tag="VF308_14695"
     CDS             981..1409
                     /locus_tag="VF308_14695"
                     /inference="COORDINATES: protein motif:HMM:NF028057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HEX7437954.1"
                     /translation="MIKFRLFALAAFLAPTLACAAQWDKVGDTSLASVYVDKDSMRRS
                     GSEVRAALEWRWNSPTEVPDTGGEKTYRLERQVQTSNCAHLSYAVAEGTRYADQRGID
                     LVSSYKYDERSLPYMEARPRTIRDTIIAHVCRAAPQPKKP"
     gene            1450..2133
                     /locus_tag="VF308_14700"
     CDS             1450..2133
                     /locus_tag="VF308_14700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008345536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta family hydrolase"
                     /protein_id="HEX7437955.1"
                     /translation="MESPGTQALTIAIDATSSVSALLMAAPAARACYVLAHGAGAGMT
                     HPFMSAVANGLAERDIATLRYQFPSMERGSKRPDAPVVAHAAVRAAVAEAARRLPGLA
                     LIAGGKSFGGRMTSQAQAAAPLPGVIGLAFLGFPLHPAGRPSDERAQHLNEVRIPMLF
                     LQGTRDDLADEQLLRSVAERLGARATLRLFEHADHSFQVPARSGRRDVEVRAQMLDAL
                     AQWIRMLGA"
     gene            complement(2241..>2971)
                     /locus_tag="VF308_14705"
     CDS             complement(2241..>2971)
                     /locus_tag="VF308_14705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019936782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7437956.1"
                     /translation="TAVKVRVEGGRKLVELVNDGDVTTVDVDEILTGIGRIPSVQGLD
                     LEAAGVAYDAEEGVHVDDFLRTSNPRIYAAGDVCLEHMYTDTADASARIVVQNALFLG
                     RKRMSALTIPWCTYTDPEIAHVGIYVKQARERDIPVKTFTVPMHDVDRAIADGEEDGF
                     VKIHVREGTDTVLGATIVARHAGEMINEISLAMVAGIGLRTLAGVIHAYPTQAEAIKK
                     AADAYTRTRLSPLLGWLLRKWLNR"
BASE COUNT          461 a         1036 c          969 g          505 t
ORIGIN      
        1 ccccggtgcg gggcctgatg tgggccgcgg ccgcaggcct gatcttcgcg catctcaatg
       61 cgctgatgcg gctcttgacc ctgcacctcg atccgttcca gacccagttc ctgcgctacc
      121 tgttcggcat gctcgtgatg ctgccgctgg tgctgcgcag cggcgtacgc gcctactggc
      181 ccaagcagat cggcgcccag ttcgcgcgcg gcgcggtgca taccctgggc ctgtgcctct
      241 ggttcacggc gctgccgagg attgctttgg ccgacatgac ggcgatcggc ttcaccgggc
      301 cgatcttcat catggtcggc gcctacttct tcttccacga accgatgcgc tgggagcgct
      361 ggctcgcgtc aggcatcggc ctcgccgggg tcgcgatcgt gctcgcgccc aagctctcgg
      421 gcagcggcgg cgcctacaac ctcgtcatgc tcgcctcggc gccagtcttc gccgcctcgt
      481 tcctgctgac caagggcctg acacggcgcg aaggcaccgg cgtgatcgtg gtctggcagg
      541 ccatcagcgt gaccctcttc agcctgccgc tcgccctttt ccactggcag acgccgagcc
      601 tcgtgcagtg ggccggcttc gcggtgtgcg ggctgctcgg cagcagcggc cactactgcc
      661 tgacgcggtc cttccgcagc gccgacattt cgtcgacgca atcggtcaag tttctcgacc
      721 tcgtctgggc cactggcatc ggctggctgc tctttgccga agtgccgagc cagaccacgc
      781 tgatcggcgg cgccgtgatc tgcgcggcga cgatctggat cgcacggcgc gagtcccggc
      841 gtggcctcgt gacagcggaa gagttggcaa aaagcggcga atcgccggcg gcgtgactac
      901 gttcggtaac gtcccggcgc cgcgcttgga cgtatgcttc gccgcgccct caaaaccgag
      961 ccaccgccga gacatccacg atgatcaagt tccgcctgtt cgccctcgct gccttcctcg
     1021 cacccaccct cgcctgcgcc gcgcaatggg acaaggtcgg cgacaccagc ttggcgagcg
     1081 tgtacgtcga caaggactcg atgcgccgca gcggcagcga agtgcgagcc gcgctcgaat
     1141 ggcgctggaa cagcccgacc gaagtgcccg acaccggggg cgagaaaacc taccgcctcg
     1201 agcgccaggt gcagacctcg aactgcgctc acctcagcta cgcggtcgcc gaaggcacgc
     1261 gctatgccga ccagcgcggc atcgatctgg tctcgagcta caaatacgac gagcgctcgc
     1321 tgccctacat ggaagcccgg ccgcgaacga tccgcgacac catcatcgcc cacgtctgcc
     1381 gcgccgcgcc gcagccgaag aagccctgag aggcgacgcc tcaagcccag cagtcgaggc
     1441 gcgggctcga tggaatcccc cggcacccaa gcgctgacaa tcgcgatcga cgcgacgtcg
     1501 agcgtctccg ctctactgat ggcggcgccg gcggcgcggg cctgctacgt gctggcgcac
     1561 ggcgccggcg ccggcatgac gcacccgttc atgagcgccg tcgcgaacgg cctggccgag
     1621 cgcgacatcg cgacgctgcg ctaccagttt ccgtcgatgg aaagaggctc gaagcggccc
     1681 gatgcacccg tcgtcgcaca cgccgccgtc cgggcggccg tggcggaagc ggcgcgccgg
     1741 ctccccgggc tcgcgctcat cgcgggcggc aagtcgttcg gcggccggat gacctcgcag
     1801 gcacaagcgg cggcgccctt gcccggcgtg atcggactgg cgttcctcgg cttcccgctg
     1861 catccggccg ggcggccttc ggatgagcgc gcgcagcacc tgaacgaggt ccgaatccca
     1921 atgctgttcc tgcaagggac gcgcgacgat cttgccgacg agcaactcct gcgatcggtc
     1981 gccgagcgcc tcggcgcgcg agcaacactg cgcctattcg agcacgccga tcactcgttc
     2041 caggtccccg cgcgcagcgg acgtcgggat gtggaagtgc gagcgcagat gctggacgcg
     2101 ctggcgcaat ggattcgcat gctgggcgcg tgagccggca acctgtacgc gtgcagcaat
     2161 ccggccggcc ccacgaattt gtccagcctt tcaccagaac aacgggcact gactgctgca
     2221 gcggccaaac aggaatccgt tcatcgattc agccatttcc gcaacagcca gccgaggagc
     2281 ggggacaggc gcgtgcgcgt ataggcgtcc gccgccttct tgatcgcctc ggcttgggtc
     2341 gggtaggcat ggatcacgcc ggccagcgtc cgcaagccga tgccggcgac catcgcgagc
     2401 gatatttcgt tgatcatttc gccggcatgc cgggccacga tcgtggcgcc cagaaccgtg
     2461 tcggtgcctt cccgaacatg aatcttgacg aagccgtctt cttcgccatc ggcaatcgcg
     2521 cggtcgacgt cgtgcatcgg gactgtgaag gtcttcaccg ggatgtcgcg ttcgcgcgcc
     2581 tgcttcacgt agatgccgac gtgggcgatc tcggggtcgg tgtaggtgca ccacggaatc
     2641 gtcagcgcgc tcatcctctt gcggccgagg aacagggcgt tttgaaccac gatgcgtgcc
     2701 gaggcatctg ccgtgtcggt gtacatgtgt tcgagacaga cgtcgcccgc ggcgtagatg
     2761 cgcgggttgc tggtgcgcag gaagtcgtcg acgtggaccc cttcttcggc gtcgtacgcg
     2821 acgcccgcgg cttccaggtc gagcccttgg accgagggga tgcggccgat tccggtcaag
     2881 atctcatcga cgtcgaccgt cgtgacatcg ccgtcgttga ccagctcgac gagctttcgg
     2941 ccgccttcca cgcgaacctt gacggcggtg c
//
LOCUS       DASVHM010000803         2537 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1359469, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000803 DASVHM010000000
VERSION     DASVHM010000803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1359469"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..174)
                     /locus_tag="VF308_14710"
     CDS             complement(<1..174)
                     /locus_tag="VF308_14710"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346532.1"
                     /note="The point of entry for the majority of electrons
                     that traverse the respiratory chain eventually resulting
                     in the reduction of oxygen; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEX7437957.1"
                     /translation="MSIEGVFKEGFVTTSLDSVINWSKTGSLWPMTFGLACCAVEMMH
                     AGAARYDIDRFGML"
     gene            complement(215..574)
                     /locus_tag="VF308_14715"
     CDS             complement(215..574)
                     /locus_tag="VF308_14715"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEX7437958.1"
                     /translation="MNLEPYLPVILFILIGVAVGVAPQALGFLLGPHRPDQAKNSPYE
                     CGFEAFEDARMKFDVRYYLVAILFILFDLEIAFLFPWAVSLKEIGMPGFLAMMLFLAI
                     LVVGFVYEWKKGALDWE"
     gene            complement(658..742)
                     /locus_tag="VF308_14720"
     tRNA            complement(658..742)
                     /locus_tag="VF308_14720"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(706..708),aa:Leu,seq:gag)
     gene            complement(863..1291)
                     /gene="secG"
                     /locus_tag="VF308_14725"
     CDS             complement(863..1291)
                     /gene="secG"
                     /locus_tag="VF308_14725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEX7437959.1"
                     /translation="MNVMLNLVVALQILTALVMIGLVLIQHGKGADMGASFGSGASGS
                     LFGATGSANFLSRSTAACAAVFFVCTLALAFFSNDRARPATGSVLDRPVIGAPAASVP
                     ATGAAQVPGPASALTVPPVAAVASAVGPAAAASGAAAIPK"
     gene            complement(1341..2081)
                     /gene="tpiA"
                     /locus_tag="VF308_14730"
     CDS             complement(1341..2081)
                     /gene="tpiA"
                     /locus_tag="VF308_14730"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEX7437960.1"
                     /translation="MRRKLVVGNWKMNGSHAANAELLAGLQAAGPWVAEVAVCAPFPY
                     LAEVALSLQGGDMAWGAQDCSAHESGAYTGEVSAAMLAEFGCRYVIVGHSERRALHLE
                     SDQLVADKAKAALGHRLTPIVCVGETLAEREAGQTIAVVKRQMSVVVRTLAHCISQVA
                     VAYEPVWAIGTGKTATPEEAQAVHALLRAQLRAATGHAADMKILYGGSVKPDNAAALF
                     SQADIDGGLIGGASLKAVDFAAICRAAA"
     gene            complement(2104..>2537)
                     /locus_tag="VF308_14735"
     CDS             complement(2104..>2537)
                     /locus_tag="VF308_14735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007837777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEX7437961.1"
                     /translation="LGAHHAIDYREQDFVAEVARITEGRGVDVILDMVAGAYVARELK
                     CLAEDGRLVIIAVQGGIEAQIDAGAVLRRRLTITGSTLRPRPIAFKAAIASALRARVW
                     PWLESGIVKPVIHQVFPAAQAAQAHALMESNQHIGKLVLQW"
BASE COUNT          457 a          854 c          838 g          388 t
ORIGIN      
        1 cagcatcccg aagcggtcga tgtcgtagcg cgcggcgccg gcatgcatca tctcgaccgc
       61 gcagcacgca aggccgaagg tcatgggcca cagcgacccg gtcttcgacc agttgatcac
      121 cgaatcgagg ctcgtcgtga cgaagccttc cttgaatacg ccttcgatgc tcatgccgag
      181 tgcctgcggt gaatcgtgcc tgcgatgaac tgcgtcattc ccagtccagc gcgccctttt
      241 tccactcgta gacgaagccg acgacgagga tggcgaggaa caacatcatg gccaggaaac
      301 ccggcatgcc gatctccttc aaggagaccg cccagggaaa aaggaaggca atctcgaggt
      361 cgaacaggat gaagaggatc gcgacgaggt aatagcgcac gtcgaacttc atgcgcgcgt
      421 cttcgaaggc ctcgaagcca cactcgtagg gcgagttctt cgcctggtcg gggcgatgcg
      481 gcccgagcag aaagcccaat gcctgtggcg cgacaccgac cgccacgccg atcaggatga
      541 acaggatgac gggaaggtag ggttccagat tcatggtgct gcgcgcacaa gcgaacgcgc
      601 tcgagactgg cagggccacc tcgccggagt gcggcttcgc gacccttgga gcaagtttgg
      661 tgccgacggc gagactcgaa ctcgcacagc tttcgccact accccctcaa gatagcgtgt
      721 ctaccaattt caccacgtcg gcggcacacg aaaacgaagt ctgaaaggca tgaggaatgg
      781 cccaaccgac aacgcaaatt ctaacccgaa cgaggacggt cgccggggaa gcgaggacca
      841 cgctctggcg ttccgcagcg agctacttcg gaatcgccgc tgctcccgaa gccgccgcgg
      901 ccggtccgac tgccgaggcg acggccgcca ccggcggcac ggtcagcgcg ctcgccgggc
      961 ccgggacctg cgcggccccg gtcgcaggaa cgctcgccgc gggcgcaccg atgacgggcc
     1021 ggtcgagcac gctgccggtc gccgggcgcg cgcgatcgtt cgagaagaaa gccagcgcca
     1081 atgtgcagac gaagaacacc gccgcgcagg ccgccgtcga gcgcgacagg aaattggcgc
     1141 tgccggtggc gccgaagagg ctgcccgagg cgccgctgcc gaacgaggcg cccatgtcgg
     1201 cgcccttgcc gtgctggatc aacacgaggc cgatcatcac gagggctgtg aggatctgca
     1261 gcgcgacgac aaggttcaac atcacattca tgcttgcgac tccgtaattc ttcttgggtg
     1321 cgcgccgcgg cttcgagcgt tcacgcggct gcgcggcaga tggcggcgaa atcgaccgcc
     1381 ttcaaggacg cgccgccgat caggccacca tcgatgtcgg cctgcgaaaa aagggcagcg
     1441 gcgttgtcgg gcttgacgct gccgccatag aggatcttca tgtcggcagc gtgcccggtc
     1501 gccgcacgca actgcgcgcg cagcagcgcg tgcaccgcct gcgcctcttc gggcgtcgcg
     1561 gtcttgccgg tgccgatcgc ccagaccggc tcgtaggcca cggccacttg ggagatgcag
     1621 tgcgcgagcg tgcggaccac gaccgacatc tggcgcttga cgacggcgat cgtctgcccg
     1681 gcttcgcgct ccgcgagggt ctcgccgacg cagacgatcg gcgtcaggcg gtggccgagg
     1741 gcggccttgg ccttgtctgc cacgagctgg tcgctttcga gatgcagcgc gcggcgttcc
     1801 gagtgcccga cgatcacgta gcggcagccg aactcggcca gcatcgcggc tgaaacctcg
     1861 ccggtgtagg ccccggattc gtgtgccgag cagtcctggg cgccccaggc catgtcgccg
     1921 ccctgcagcg acagggccac ttcggccaga tacggaaacg gggcgcacac cgctacctcg
     1981 gccacccacg gcccggcggc ctgcagtccc gcgagcagtt cggcgttggc cgcatggctg
     2041 ccgttcatct tccagttgcc gaccacgagt ttgcgtcgca tggttttcat cctcggcgag
     2101 ccgctaccac tgcaggacga gcttgccgat gtgctggttc gattccatca gcgcatgggc
     2161 ctgggccgcc tgagccgccg gaaacacctg gtgaatcacc ggcttgacga tgccggactc
     2221 gagccagggc cataccctgg cgcgcagcgc gctcgcgatc gcggccttga atgcgatcgg
     2281 ccgtggccgc aaggtcgacc cggtgatggt caggcgccgg cgcagcaccg cgccggcatc
     2341 gatctgcgcc tcgattccgc cctgcaccgc gatgatgacg aggcgcccgt cttcggccag
     2401 gcacttgagc tcgcgcgcca cgtaggcgcc ggccaccatg tcgaggatga cgtcgacgcc
     2461 acgcccttcg gtgatgcgcg ccacttcggc gacgaaatcc tgctcgcgat agtcgatggc
     2521 gtgatgggcg ccgagcc
//
LOCUS       DASVHM010000804         2614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_852232, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000804 DASVHM010000000
VERSION     DASVHM010000804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2614
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_852232"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2359)
                     /locus_tag="VF308_14740"
     CDS             complement(<1..2359)
                     /locus_tag="VF308_14740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="vWA domain-containing protein"
                     /protein_id="HEX7437962.1"
                     /translation="MHELSRTGHGRWLLLGAATFAFAALRAAPVSAQTLIVDGSGTLG
                     AATFDIGSATQRRYDHVCVINGGLVTVDPYMGGDKAVQGNLELIAGSVYVDATSKISA
                     RGAGYQGRTCDAGDGPTLTSGGRGGCSVADSGGGGAHFGNGGRGTVDAPVAFPVSFED
                     ACTSTWTGSTCSSFADCGTPMMSCPDGRGGRFCEIGPSVAGLGFWHNIFEPEFGAAGG
                     DKGCRDNNAFSPMTAGAGGGRVVLVGLHDLTSVKTSPCGIGLSRGQVEVDGQIDANGK
                     RGCGIGNDSAGGGAGGTVLIVGEQVTIGASAVISAKGGRGGDTFAAASGQPDYRDCIA
                     GAQTGGTCDDCGGGGGGGVINVQSVTSNIDPAANFDVGGALGGVCTVCTGEAGGGAGE
                     LQIDSAYVGEICDGYDNDFDGTIDEGLGSVDCGLGTCTTPIPACQNGAPVSCTPTTGS
                     DRTCKADPAGAKPRVAVILDTSASMLLTLSGYPTFGDGSVEHPGLDLNGDTLSNDSRL
                     FLARESLGQVMSAYPEIEFSLARYHQDQAKDRNCQTAAWYECKGLVASYDNPVGNTGP
                     KVCDVAIGPSTKIAVNQLPQSPEECINYAGSCGGPRRGADVLAGFGMPVRDIVRWLDG
                     RETNFVNTTTVGDYCDHSKGGDCEVRGSGPTPLAGSLEAIQDYLGPIRATDPATSCRG
                     YSVILVTDGAESCNGDPAAAAQSLHDAFGVEVYVIAVSVLPTEQASLNAIASAGSGGA
                     RPTATFVSQPQDLVPALSTIIAGSIHSEKCNGMDDDCDGKIDEDFP"
BASE COUNT          403 a          894 c          883 g          434 t
ORIGIN      
        1 cggggaaatc ttcgtcgatc ttgccgtcgc agtcgtcgtc catgccgttg cacttctcgc
       61 tgtggatcga gccggcgatg atcgtggaga gcgccggcac caggtcttgc ggttgcgaca
      121 cgaacgtagc cgtcggtcgc gcgccgcccg aaccagctga cgcgatcgcg ttgagcgacg
      181 cttgctcggt cggcaagacg ctgaccgcga tcacgtacac ttcgacaccg aacgcatcgt
      241 gcagactctg cgcggccgct gcgggatcgc cgttgcagct ttcggcgccg tcggtcacca
      301 ggatcacgct gtagccgcgg cagctggtcg caggatccgt ggcgcgaatc gggccgagat
      361 aatcttgaat cgcttcgagc gagccggcga gcggcgtggg gccggagccg cgcacttcgc
      421 agtcgccgcc cttcgagtgg tcgcagtagt caccgaccgt cgtggtgttc acgaagttgg
      481 tctcgcggcc gtccagccag cgcacgatgt cgcgcacggg catgccaaag cccgcgagga
      541 cgtcggcgcc gcgacgcgga ccgccgcacg agccggcgta gttgatgcat tcctccggcg
      601 actgcggcag ctgattgacc gcgatcttgg tgctcggccc gatcgcaacg tcgcatacct
      661 tggggcccgt gttgcccacc gggttgtcgt agctcgccac caggcccttg cactcgtacc
      721 aggccgcggt ctggcagttg cggtccttgg cttgatcctg gtgatagcgc gccagcgaga
      781 actcgatctc gggatacgcg ctcatcacct ggccaagcga ttcgcgcgcc agaaataggc
      841 gcgagtcgtt cgacagcgtg tcgccgttca ggtcgaggcc ggggtgctcg acgctgccgt
      901 cgccgaaggt cgggtagccc gagagcgtga gcagcatcga ggccgaggtg tcgaggatca
      961 cggccacgcg cggcttcgcg cccgcgggat ctgccttgca ggtgcggtcg cttccggtcg
     1021 ttggtgtgca gctgacagga gcgccgttct ggcacgccgg aatcggcgtg gtgcacgtgc
     1081 cgaggccgca gtcgacgctg ccgaggcctt cgtcgatggt gccgtcgaag tcgttgtcgt
     1141 agccgtcgca gatctctccg acgtaggcgc tgtcgatctg cagctcaccg gcgccgccgc
     1201 cggcttcgcc ggtgcagacg gtgcagacac caccgagcgc gccgccgacg tcgaagttgg
     1261 ctgcaggatc gatgttggag gtcaccgatt gcacgttgat gacgccgccg ccgccgccgc
     1321 caccgcagtc gtcgcaggtg ccgccggtct gtgcaccggc gatgcagtct cggtagtcgg
     1381 gttggcccga ggcggccgcg aacgtgtcac cgcctcggcc gcccttggcg ctgatcaccg
     1441 cgctcgcacc gatcgtcact tgctcgccga cgatcaacac cgtgccgccc gcgccaccgc
     1501 cggccgagtc gttgccgatg ccgcagccgc gcttgccgtt ggcgtcgatc tggccgtcga
     1561 cctcgacttg tccgcgcgag aggccgatgc cgcacggcga ggtcttcacg ctggtgagat
     1621 cgtgcaagcc cacgagcacc acgcgcccgc cgcctgcgcc cgcggtcatg ggcgaaaagg
     1681 cgttgttgtc gcggcagcct ttgtcgccac cggccgcgcc gaactccggc tcgaagatgt
     1741 tgtgccagaa gccgagaccc gcgaccgacg gaccgatctc gcagaagcga ccgccgcggc
     1801 cgtcggggca gctcatcatc ggcgtgccgc agtcggcgaa cgagctgcag gtgctgccgg
     1861 tccacgtgct cgtgcacgcg tcttcgaacg acacggggaa cgccacgggc gcatcgacgg
     1921 tgccgcgacc gccgttgccg aagtgcgcgc cgccgccacc cgagtccgct acgctgcaac
     1981 cgccgcgacc gccggaggtc agcgtggggc cgtcgcccgc gtcgcaggtg cggccttgat
     2041 agccggcgcc gcgcgcgctg atcttggacg tcgcgtcgac gtagacgctg ccggcgatca
     2101 gctccaggtt gccttgcacc gccttgtcgc cgcccatata cggatcgacc gtaacgaggc
     2161 cgccgttgat cacgcagacg tgatcgtagc gacgctgcgt agcgctgccg atgtcgaacg
     2221 tggcggcacc gagcgtgccc gagccatcga cgatcagggt ctgcgcggag acgggcgctg
     2281 cccgcagcgc ggcaaacgcg aacgtggcgg caccgagtag caaccagcga ccatggcccg
     2341 tgcgagacag ctcatgcatt cgcgcaacat agcacgatgc tgcgcgtcac cgaataggca
     2401 gaggtgtgat gatgacggcg gcttgtgata gcctcgagca cctcgatcac ctcgatcacc
     2461 atgacctacc gaaccatcac cctcggcatc gattttcccc aaccggtcac ggctgtgttt
     2521 gcgcacttga gtaagcacga gaatctcgcg ggggtcttcg gcatgccgat ctcgcggatc
     2581 gcgaccagct cggatccgtc cgagccggac gaca
//
LOCUS       DASVHM010000805         2977 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1141998, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000805 DASVHM010000000
VERSION     DASVHM010000805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2977
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1141998"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..985)
                     /locus_tag="VF308_14745"
     CDS             complement(<1..985)
                     /locus_tag="VF308_14745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007879988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HEX7437963.1"
                     /translation="MALLEVRNLGVEFGSVAAPFKAVDGVTFSIDAGEIVGVVGESGS
                     GKSVTALALMGLVDEPGRVSAEHLAFDGRDLLAMKVAERRALLGRDIAMIFQDPQSSL
                     NPCFTVAFQLIEALRLHEGGSPKALRGRALELLRTVEIPDPELRLESYPHQLSGGMAQ
                     RVMVAMAIACNPRLLIADEPTTALDVTIQAQMLALLLKLQRERGMALMLITHDLGVIA
                     EVAQRVLVMYAGQVVETAHVPEIFSAPQHPYTEALLAALPEHNIGRRRLHSMAGVVPG
                     AYDRPEGCLLAPRCTYVQPRCEAERPALFEVGAGQARCFFPLHGGRPPAPPV"
     gene            complement(1450..2349)
                     /locus_tag="VF308_14750"
     CDS             complement(1450..2349)
                     /locus_tag="VF308_14750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007879989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX7437964.1"
                     /translation="MSAVSEAGVQSNTAPSPAVELWRDFRRNRGAIIGLAVVVALVLC
                     ALLADVIAPHPPNEQYRDATLKAPSLQPIGGHVFVLGTDPVGRDVLSRLIHGTRLSLA
                     IGLVSVGLSLSGGVLLGLLAGFFRGGVEFTIMRLMDIMLALPSLLLAVAVVAILGPGL
                     ANAMYAIAIVMLPHFVRLTRAAVIGELAKDYVSASRIAGAGTGRLMFDTVLPNCAAPL
                     IVQGTLGFSTAILDAAALGFLGLGAQPPTPEWGSMLASALEFIQSAWWVVTLPGLAIL
                     VSVLAFNLMGDGLRDALDPRLKR"
     gene            complement(2346..>2977)
                     /locus_tag="VF308_14755"
     CDS             complement(2346..>2977)
                     /locus_tag="VF308_14755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014006670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX7437965.1"
                     /translation="TVWDYSVMGASLTGYSMPIFWWGLLLILTFSVWLGWTPVSGRIA
                     IQYDIAPVTGFMLVDSLLASDKGAFRSALSHLVLPAIALGTIPLAVIARMTRSSMLEV
                     LREDYVRTARAKGASTFRVVGIHALRNALIPVVTTIGLQVGTLLAGAILTETIFSWPG
                     IGKWLVEAIHRRDYPSVQGGILMSASVIIGVNLVVDLLYGVINPRIRHQ"
BASE COUNT          490 a         1034 c         1039 g          414 t
ORIGIN      
        1 cgaccggcgg cgccggcggt cgcccgccgt gcagcggaaa gaagcagcgc gcctgtccgg
       61 cgccgacctc gaatagcgcc gggcgctcgg cctcgcagcg cggctgcaca tacgtgcagc
      121 gcggcgcgag caggcagccc tccggccggt cgtacgcgcc gggcacgacg ccggccatcg
      181 aatggaggcg gcgccgcccg atattgtgct cgggcagcgc cgcgagcagc gcctcggtgt
      241 acggatgctg gggtgcgctg aagatctcgg gcacgtgcgc ggtctcgacg acctggccgg
      301 cgtacatcac gagcacgcgc tgcgccactt cggcgatcac gccgagatcg tgcgtgatca
      361 gcatcagcgc catgccgcgc tcgcgctgga gtttgagcag cagcgccagc atctgcgcct
      421 ggatcgtcac gtcgagcgcg gtggtcggct cgtcggcgat cagcaggcgc gggttgcagg
      481 cgatcgccat cgcgaccatc acgcgctgcg ccatgccgcc cgagagctgg tgcggatacg
      541 actcgaggcg cagctccggg tcggggatct cgaccgtgcg caagagttcg agcgcgcgcc
      601 cgcgcaaggc tttcggcgag ccgccttcgt gcaggcgcag cgcctcgatc agctggaacg
      661 cgaccgtgaa gcacgggttc aggctgcttt gcggatcctg gaagatcatc gcgatgtcgc
      721 gaccgagcag cgcacggcgt tcggcgacct tcatcgcgag caggtcgcgg ccgtcgaacg
      781 cgaggtgctc ggcgctgacc cgaccgggct cgtcgacgag gcccatcagg gcgagcgcgg
      841 tgacgctctt gcccgagccg gattcgccga cgacgccgac gatctcgccg gcgtcgatcg
      901 agaaagtcac gccgtcgacc gccttgaacg gcgcggcgac gctgccgaat tcgacgccga
      961 ggttgcggac ttcgagcagc gccatctcag tcgctccaac gcgcttcgtg cgacccacga
     1021 agaatgcagc gcaagttttc gacagtcgag cgcgcaaagc cgtgggcggg tggccgtctg
     1081 cgcttcactg cggcggtcgg ccttgcaggc cgacttccct gcggtgctcg ggacccgggg
     1141 gcgggcgcag aactcgccct cgcatggccg gcacgcgctt gcagcgcgcg cctgtgctcg
     1201 gtgctcagac aggctgcgct cgacgcatcg ccttgcggcg atgcgcaacc cccggccccc
     1261 tgcgctcctc ggcgccgcag aggcgcgcaa tcgtccaccc gcccacggct ttgcgggaga
     1321 cagcggttca gctccatgcg gaactccgcc gcccgcccgc gcctctgcgc gcctccagcg
     1381 ccggacttga tccgctgctt gcccgtgcct gtgcaggttc gatggttgga gttctcgtac
     1441 ggcttcattt cagcgcttca ggcgcgggtc gagcgcgtcg cgcaggccat cgcccatcag
     1501 gttgaacgcg agcaccgaca ccaggatcgc gagacccggc agcgtgacga cccaccacgc
     1561 gctctggatg aactcgagtg cgctcgccag catcgagccc cactcgggcg tcggcggctg
     1621 cgcgccgagg ccgagaaagc cgagcgccgc ggcgtcgagg atcgctgtcg aaaatcccag
     1681 cgtgccctgc acgatcagcg gcgcggcgca gttcggcagc accgtgtcga acatcagccg
     1741 cccagtgccg gcgccggcga tccgcgacgc gctgacgtag tccttcgcga gttcgccgat
     1801 cacggcggcc cgcgtcaggc gcacgaagtg cggcagcatc acgatcgcga tcgcgtacat
     1861 cgcgttggcc agacccggtc cgaggatcgc gaccaccgcg acggccagca gcaggctcgg
     1921 cagcgccagc atgatgtcca tcagccgcat gatcgtgaac tcgaccccgc cgcggaagaa
     1981 gccggcgagc agaccgagca gcacgccgcc gctgagcgaa agcccgaccg agacgaggcc
     2041 gatcgcgagc gagagccggg tcccgtggat caggcgcgag agcacgtcgc ggccgacggg
     2101 atcggtgccg agcacgaaca catggccgcc gatcggctgc agcgacggcg ctttcagggt
     2161 cgcgtcgcgg tattgctcgt tcggcggatg cggtgcgatc acgtcggcca gcagcgcgca
     2221 cagcaccagg gcgacgacga ccgcgagtcc gatgatcgcg ccgcggttgc ggcggaagtc
     2281 gcgccacagt tcgaccgccg gcgagggtgc cgtgttgctt tgcacgccgg cttccgacac
     2341 cgcgctcatt gatgccggat ccgcgggttg atcacgccgt agagcaggtc tacgacgagg
     2401 ttgacgccga tgatcacgct ggccgacatc aggatgccgc cctgcacaga gggatagtcg
     2461 cggcggtgga tcgcctcgac cagccacttg ccgatgcccg gccacgagaa gatcgtctcg
     2521 gtcaggatgg cgccggcgag cagggttccg acctgcagcc cgatggtcgt gacgaccggg
     2581 atcagcgcgt ttcggagcgc gtggatgccg accacgcgaa acgtcgaggc gcctttcgca
     2641 cgtgcggtgc gcacgtagtc ctcgcgcagc acctcgagca tgctcgagcg cgtcatgcgc
     2701 gcgatcacgg cgagcgggat cgtgccaagc gcgatggccg gcagcaccag gtgcgagagc
     2761 gcgctgcgaa acgccccctt gtcggacgca agcagcgaat cgaccagcat gaaaccggtc
     2821 accggcgcga tgtcgtactg gatcgcgatg cggcccgaca ccggtgtcca gccgagccag
     2881 accgagaacg tcaggatcag caagaggccc caccagaaga tcggcatcga gtagccggtg
     2941 agcgaggcgc ccatcaccga atagtcccag accgtgt
//
LOCUS       DASVHM010000806         3573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_926104, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000806 DASVHM010000000
VERSION     DASVHM010000806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3573
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_926104"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1089)
                     /locus_tag="VF308_14760"
     CDS             complement(<1..1089)
                     /locus_tag="VF308_14760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7437966.1"
                     /translation="MNLSELFIRRPVLTVLLNAAIVVAGVIAYNRIPVAALPSYNTPV
                     INVQATLPGASPETMATSVALQLEKQFQTIPGLSVISSTNTLGTTSVTLEFEQGRDID
                     AAAVDVQAALLRAQKTLPVDMTIPPAYRKVNPADAPVLLIALTSPSLNLSDLNDFAEH
                     LISPSLSTLEGVAQVNIFGQKRFAVRVRVMPEALTARNISLDELNAALKAANVNTPVG
                     TLDGPKQTLTLQANRQLRNAAEFAELIVSNKGGNPVRLRDVAQVEDSYEIVKTSASLN
                     GETSITLAILRQPAANTVKVVDSVRAALPLFQAQLPQSVRMSLVNDRSISVRAALHDV
                     TLTMMGTIALVVLVIFLFLRRFVATLIPT"
     gene            complement(1086..2333)
                     /locus_tag="VF308_14765"
     CDS             complement(1086..2333)
                     /locus_tag="VF308_14765"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX7437967.1"
                     /translation="MNRAAIGGLALGIVVVLAAGYVVIRGREAQRGAEPGAAAPAASG
                     AASGAGGAPVPVSSVRAQRRDVDVVLEATGTVTALNSVDVRPQISSVITQVHIREGQF
                     VKQGQLLFTLDPRNDEVNVTKAKAQLAKDMASLADAQRQLARSRDLFAQNFISQGAVD
                     TNQTLVEAQQAVVASDRAAIEAAQVGLSYNRIVATTAGRAGAINVFAGSTVQPAGAAL
                     VTITQLDPIAVGFSLPQRNLADALQTLRSGGGKVIAVLPEGHGTIVGRLQFVDNAVDA
                     GSGTVRVKAQFDNADEKLWPGAFVNVSLAVRTLKDAVVVPQAAIITAPRGKIVYVVDA
                     GNRGEARPVEVTYSSGEDAVVTGLRPGERVVVDGRQNMRPGAMVMERPGNEGGGGARR
                     GAGGASGAAASAAPLAMSSGATP"
     gene            complement(2403..>3573)
                     /locus_tag="VF308_14770"
     CDS             complement(2403..>3573)
                     /locus_tag="VF308_14770"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7437968.1"
                     /translation="APTLGLLIAARVLQGLGGGGLMTLSQALIGEVVPPRLRARNQGY
                     FAIIFTLASVGGPVLGGLIVQQASWRWLFLVNLPLCALAAWRLHGLRGDDVPHPAHGR
                     VDAAGLLLFAAAMGTSLYWVSSGGHRFAWASAPSVALALAALALWTGLLRVELRVERR
                     AERPFLPIDLVRRPAIRYAVLTVIGFASVMFAMVFYLPVYLQLALHSNPAQSGLMLLP
                     LTTGIVGGAALTGRLIVWTGRPTDIPKFGLLMAAASLCALALAPADKRILIGLGFSTG
                     LGLGSVMSVMQIVTQSEAGPARLGAAAGTISLARTLGSSLGASVFGALIYGSIGGTLD
                     FAALQDPQVQARVQMAFRFAFFGAAALCALAAWTASRVPALHFTEELRGVEPVGE"
BASE COUNT          556 a         1240 c         1275 g          502 t
ORIGIN      
        1 cgtcgggatc agggtggcga cgaagcggcg caggaacagg aagatgacga ggacgacgag
       61 cgcgatcgtg cccatcatcg tcagcgtcac gtcgtgcagc gcggcacgga ccgagatcga
      121 tcggtcgttg acgaggctca tgcgcaccga ttgcggcagc tgggcctgga agaggggcag
      181 cgcggcgcgc accgagtcga ccaccttgac ggtgttggcg gcgggttggc gcaggatcgc
      241 cagcgtgatc gaggtctcgc cgttcaggct cgcggaggtc ttgacgatct cgtagctgtc
      301 ttcgacctgc gcgacgtcgc gcagccgcac cgggttgccg cccttgttgc tgacgatcag
      361 ctcggcgaac tcggccgcat tgcgcagctg ccggttggcc tgcaaggtca gcgtctgctt
      421 tggcccgtcg agcgtgccga ccggcgtgtt gacgttggcc gccttgagcg cggcgttcag
      481 ctcgtcgagg ctgatgttgc gcgccgtcag cgcctcgggc atcacgcgca cgcgcacggc
      541 gaagcgcttc tggccgaaga tgttgacctg ggccacgcct tcgagtgtcg acaggctcgg
      601 cgaaatcagg tgttccgcga agtcgttgag gtcggaaaga ttgagcgacg gcgaggtcag
      661 cgcgatcagc agcaccggcg cgtctgccgg gttgaccttg cgatacgccg gcgggatcgt
      721 catgtcgacc ggcagggtct tctgcgcccg caggagcgcg gcctgcacgt cgaccgcggc
      781 cgcgtcgatg tcgcggccct gttcgaactc gagcgtcacc gaggtcgtgc cgagcgtgtt
      841 ggtcgagctg atgacgctca ggccggggat ggtctggaac tgcttttcca gctgcagggc
      901 gaccgaggtc gccatcgtct ccgggctcgc gccgggcaag gtggcctgga cattgatgac
      961 cggcgtgttg tagctcggca gcgcggcgac cgggatgcgg ttgtaggcga tgaccccggc
     1021 gacgacgatc gccgcattca ggagcaccgt cagcaccgga cggcggatga acagttccga
     1081 gaggttcatg gcgtggctcc cgacgacatg gcgagcggcg ccgccgacgc tgcggccccg
     1141 gacgcgccac cggccccacg gcgcgcgccg ccgccgcctt cgttgcccgg gcgttccatg
     1201 accatcgcgc cggggcgcat gttctggcgt ccgtcgacga cgacccgctc cccggggcgc
     1261 aggccggtca cgaccgcatc ttcgccggaa gaataggtga cttcgaccgg acgcgcctcg
     1321 cccctgttgc cggcatcgac gacgtagacg atcttgccgc gcggcgcggt gatgatcgcg
     1381 gcctgcggca cgacgacggc gtccttcaag gtccgcaccg cgagactcac gttgacgaac
     1441 gcgcccggcc agagcttttc atcggcgttg tcgaactggg ccttgacgcg caccgttccc
     1501 gaacccgcat cgaccgcgtt gtcgacgaac tgcaggcgcc cgacgatggt tccgtgccct
     1561 tcgggcagga ccgcaatgac cttgccaccg ccgctgcgca gggtctgcag cgcgtcggcg
     1621 agattgcgct gcggcaggct gaagccgacc gcgatcgggt cgagttgcgt gatcgtcacg
     1681 agtgccgccc cggccggctg caccgtgctg cccgcaaaga cattgatggc accggcgcgg
     1741 cccgcggtcg tcgcgacgat gcggttgtag gaaaggccga cctgcgccgc ttcgatcgcc
     1801 gcccggtcgg aggcgaccac cgcctgctgc gcctcgacca gcgtctggtt ggtatcgacc
     1861 gccccctgcg agatgaagtt ctgcgcaaag aggtcgcggc tgcgcgcgag ctggcgctgc
     1921 gcgtcggcca gagacgccat gtccttggcg agctgggctt tcgccttggt cacgttgacc
     1981 tcgtcgttgc gcgggtccag cgtgaagagg agctggccct gcttgacgaa ctggccctcg
     2041 cggatgtgca cctgagtgat cacgctgctg atctgcggcc gcacgtcgac gctgttgagc
     2101 gcggtgacgg tgccggtcgc ctcgagcacg acgtcgacgt cgcgccgctg cgcccgcacc
     2161 gagctcaccg gcaccggcgc gccgcccgcg ccggaagcgg cacccgaggc cgccggcgcg
     2221 gccgcaccgg gctcggcgcc cctctgggcc tcgcggccgc ggatgacgac gtagcctgcc
     2281 gccagcacca cgacgatgcc gagcgccagc ccaccgatcg ccgccctgtt catagactcg
     2341 tcctgtctcc agacctgcgt cgcgacgcag ccgctcgtgc cgatgacggc gtgcccacgc
     2401 tgctactcac cgaccggctc gacgccgcgc agttcctcgg tgaagtgcaa tgccggaacc
     2461 cggctcgccg tccaggccgc cagcgcgcaa agcgcggccg cgccgaagaa agcgaaccgg
     2521 aacgccatct gcacccgagc ctgcacctgc gggtcctgca gtgcggcgaa gtcgagcgtg
     2581 ccgccgatcg aaccgtaaat cagcgcgccg aacaccgagg ctcccaacga cgagcccagc
     2641 gtgcgcgcga gcgagatggt acccgccgcc gcgccgagcc gggcgggccc ggcctcgctc
     2701 tgggtcacga tctgcatgac cgacatcacg ctgcccaggc cgagcccggt gctgaagccg
     2761 agcccgatca ggatccgctt gtcggcgggc gccagcgcca gcgcgcacag cgacgccgcg
     2821 gccatgagca agccgaactt gggaatgtcg gtgggccggc cggtccagac gatgagccgt
     2881 ccggtcagcg cggcgccgcc gacgatgccg gtggtgagcg gcagcagcat caggcccgac
     2941 tgggccgggt tcgagtgcag cgcgagctgc aggtagacgg gcaggtagaa gaccatcgcg
     3001 aacatcaccg acgcgaaccc gatcaccgtc aggacggcgt agcggatagc cggccggcgc
     3061 accaggtcga tcggcagaaa ggggcgctcg gcgcggcgct ccacgcgcag ttcgacgcgc
     3121 agtaagcccg tccacagcgc aagcgccgcc agggcgagtg cgacgcttgg cgccgacgcc
     3181 cacgcaaacc ggtgcccgcc ggacgatacc cagtagaggc tggtgcccat cgcggccgcg
     3241 aacagcagca ggccggccgc atcgacgcgg ccatgggccg gatgcggcac gtcgtcgccg
     3301 cgcaggccat gcaggcgcca ggccgcgagc gcacagagcg gcaggttgac gagaaagagc
     3361 cagcgccagc tcgcctgctg gacgatgagg ccgccgagca ccggcccgcc cacgctcgcg
     3421 agcgtgaaga tgatcgcgaa gtagccctgg ttgcgggcgc gcaggcgcgg cggcacgacc
     3481 tcgccgatca gggcctgcga caaggtcatc aagccgccgc cgccgagccc ctgcaggacg
     3541 cgggccgcga tcaggaggcc gagcgtgggc gcg
//
LOCUS       DASVHM010000807         4117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_274107, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000807 DASVHM010000000
VERSION     DASVHM010000807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274107"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1553)
                     /locus_tag="VF308_14775"
     CDS             complement(<1..1553)
                     /locus_tag="VF308_14775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007861047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase N-terminal
                     domain-containing protein"
                     /protein_id="HEX7437969.1"
                     /translation="MDTKDAPLFDYLIVGGGSAGCVLAARLSEDAGTRVCLLEAGGTD
                     SSVLIQCPAGLALLAQTGQANWAFDTVPQPGLNGRRGYQPRGKVLGGSSSINAMIYTR
                     GQREDYDAWAALGNPGWGYADVLPWFLKAEHNERGADAFHGSGGPLNVMDLRSPNRFA
                     SVFVDAAVQAGYPVNRDFNGASQEGVGLYQVTHKNGERFSAAKAYLTPNLDRPNLHVV
                     TGAHTLRILFEGRRAVGVEARVGGEKKRFRAQREVLVAAGALQSPQLLMLSGIGPGAQ
                     LQQHGITTLHDLPGVGENLHDHVDVVQVIDAPHLSELFGLSLRGMVNAVKGIFEWRRQ
                     RSGMLTTNFAEAGGFIRSRAEETRPDLQLHFVIGKLIDHGRKAVFGHGYSCHVCLLRP
                     RSRGHVRLAGADPLAAPAIDPNFLGEPDDLERLVRGFKLMRHILQQPALAGHGGVELR
                     ASGDAQTDAQIETFIRSRADTIYHPVGSCRMGGAALDVVDAELRVRGVEGLRVVDASI
                     MPNVVSGNT"
     gene            1806..2351
                     /locus_tag="VF308_14780"
     CDS             1806..2351
                     /locus_tag="VF308_14780"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEX7437970.1"
                     /translation="MKKLLALMALTLPLAMPAYAALDVGDAAPNFTTSAALNGKVFQF
                     SLADSLAKGPVVLYFFPAAFSVGCSIEAHEFAESIEKFQALGATVIGVSGDDIDTLGK
                     FSVQTCQGKFPVASDSAQGIMKSYDAVMMLRPEYANRLSYVIAPNGSVVYNYQSLNPS
                     RHVEKTLSALRDWAQAKGKSQ"
     gene            2359..2727
                     /locus_tag="VF308_14785"
     CDS             2359..2727
                     /locus_tag="VF308_14785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437971.1"
                     /translation="MKTVSSIAVAGLLAALATGLAAAQPKTLEEVRAEAASAARGGQI
                     DRGEITTVPLAPSIKARAEVKAETRTAVKAGTIDRGEVTRAPGPKPSTKTRAEVKAEA
                     ASAIRPKPVMKVEDSSAKKQ"
     gene            2741..3322
                     /locus_tag="VF308_14790"
     CDS             2741..3322
                     /locus_tag="VF308_14790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437972.1"
                     /translation="MGRSFRVALVIGLVLGSGGVAMGAAQPGGSEAEMREELQQALWP
                     ADIVRLSNAYVGRYPQGPGAAHARAALKLAERSKRTLERKEVHLYRGDFQIDSAMPET
                     REQIRLAALGDKEAALEVARFHGSGSGGVARDMNRYVGWLQYATALGNGAASYELALH
                     YRREDQPALAAPYEARAEELGYRAPPSLDHVRK"
     gene            complement(3350..3535)
                     /locus_tag="VF308_14795"
     CDS             complement(3350..3535)
                     /locus_tag="VF308_14795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3563 family protein"
                     /protein_id="HEX7437973.1"
                     /translation="MNSLLHALTRFFGKSSTDAQDRDAAYLAQAVDIYDLERRMRQID
                     TGRQNLVSSGPYGIFMR"
BASE COUNT          619 a         1383 c         1446 g          669 t
ORIGIN      
        1 ttggtgttgc cgctgacgac gttgggcatg atcgacgcat cgacgacgcg caagccctcg
       61 acgccgcgca cgcgcagctc cgcgtcgacg acgtcaaggg ctgcgccgcc catgcggcag
      121 ctgcccacag ggtggtagat cgtgtcggcg cggctgcgga tgaaggtctc gatctgtgca
      181 tcggtctgcg catcgcccga agcccgcagt tccacgccgc cgtggccggc gagggccggc
      241 tgctgcagga tgtggcgcat cagcttgaag ccgcgcacga gccgctcgag gtcgtcgggt
      301 tcgcccagga aattcgggtc gatcgcgggt gcggccaggg ggtcggcgcc cgccagccgg
      361 acgtggccgc ggctgcgcgg gcgcagcagg cacacgtggc acgaatagcc gtggccgaag
      421 accgccttgc ggccgtggtc gatgagcttg ccgatcacga aatgaagctg caggtcgggc
      481 cgcgtttctt cggcgcggct gcggatgaac ccgccggcct cggcgaagtt ggtcgtcagc
      541 atcccgctgc gctggcgtcg ccactcgaag atgcccttca ccgcattgac cattccgcgc
      601 agcgagagac cgaacagctc gctcaggtgc ggcgcgtcga tcacctgcac cacgtcgacg
      661 tggtcgtgca ggttctcgcc cacgcccggc aggtcgtgca gcgtcgtgat gccgtgctgc
      721 tgcagctgcg cgcccgggcc gatgcccgag agcatcagga gttgcggcga ctgcagcgca
      781 ccggccgcga ccagcacttc gcgctgcgcg cgaaaccgct tcttctcgcc cccgacccgt
      841 gcctcgacgc cgaccgccct gcgcccttcg aagagaatgc gcagcgtgtg cgcgccggtg
      901 acgacgtgca ggttcggtcg gtcgaggttg ggcgtcaggt aggccttggc ggcgctgaag
      961 cgctcgccat tcttgtgcgt cacctggtag agccccacgc cctcctggct ggcgccgttg
     1021 aagtcgcggt tgaccgggta gccggcctgc acggcggcat cgacgaagac gctcgcgaag
     1081 cggttcgggc tgcgcaggtc catcacgttg agcggcccgc cgctgccgtg gaacgcatcg
     1141 gcgccgcgct cgttgtgctc ggccttgagg aaccaaggca gcacgtcggc gtagccccag
     1201 cccgggttgc cgagcgcggc ccaggcgtcg tagtcctcgc gctggccgcg cgtgtagatc
     1261 atcgcgttga tcgagctcga tccgcccaac accttgccgc gcggctggta gccgcgccgg
     1321 ccgttcaggc cgggttgcgg caccgtgtcg aaggcccagt tggcttggcc ggtctgggcc
     1381 agcagcgcga ggccggcggg gcactggatc agcacgctgc tgtcggtgcc gccggcttcg
     1441 agcaggcaga cacgggtgcc ggcatcctcg ctcaggcggg ccgcgagcac gcagcccgcg
     1501 gagccgccgc cgacgatgag gtagtcgaac aggggtgcgt ctttcgtgtc catggtgcgg
     1561 tcaatcgaga gtgcagggag ggggcgcggc ttggaggcgg attgtgcagt caagcgcccc
     1621 ggggtggagg ccccggcgaa ggggcgggtc ggcccggacc ccgttcaggg aatttcttat
     1681 tcactccgtc cgggccaacc cgaagacccg tggcgcatcc ggagatgccg gcgcgacgta
     1741 tccttcgacg tggcgcactt tctggcaaga tgaagttcgc cgggttgatc gaacggaggt
     1801 cgaagatgaa gaagttgctt gcgctcatgg cgctgacgct cccgctggcc atgcccgcgt
     1861 acgcggcgct cgacgtcggg gatgcggcgc cgaacttcac gaccagcgcc gcgctcaacg
     1921 gcaaggtgtt ccagttctcg ctcgccgatt cgctcgccaa ggggccagtg gtgctgtact
     1981 tcttcccggc cgccttctcg gtcggctgtt cgatcgaggc gcacgagttt gccgagtcga
     2041 tcgagaagtt tcaggctctc ggcgcgaccg tcatcggcgt gtcgggcgac gacatcgaca
     2101 cgctcggcaa gttttcggtg caaacctgcc agggcaagtt tcccgtggct tccgacagcg
     2161 cccagggcat catgaagtcg tacgacgcgg tgatgatgct gcggcccgaa tacgcgaatc
     2221 gactctcgta cgtgatcgcc ccgaacggtt cggtcgtcta caactaccag agcctgaacc
     2281 cgagccgcca tgtcgagaag accctctcgg ccctgcgcga ctgggcccag gccaagggca
     2341 agtcgcagtg atcggcggat gaagacagtc tcatcgatcg cggtggccgg cctgctcgcg
     2401 gcgctcgcga cgggcttggc cgcggcccag ccgaagacgc tcgaggaagt ccgcgccgaa
     2461 gccgcgtccg cggcccgggg cggccagatc gatcgcggcg aaatcacgac cgtgccgctc
     2521 gcgccgtcca tcaaggcgcg tgccgaggtc aaggccgaaa cccgcacggc cgtgaaggcc
     2581 ggcaccatcg atcgtggcga ggtcaccagg gcgccgggcc cgaagccttc cacgaagacg
     2641 cgcgccgagg tcaaggccga agccgcgtcg gcgattcgtc ctaagccggt catgaaagtg
     2701 gaggattcga gtgcgaagaa gcaatagtcg gcgcgccgcg atgggcaggt cctttcgcgt
     2761 cgcccttgtg atcggcctgg tgctcggcag cggcggcgtt gcgatgggcg cggcccagcc
     2821 cggagggtcg gaagcggaaa tgcgcgagga gctgcagcag gcgctctggc cggcagacat
     2881 cgtgcggctc tcgaacgcct atgtcgggcg ctatccgcag ggcccgggcg ccgcgcacgc
     2941 gcgcgcggcg ctcaagttgg ccgaaaggtc gaagcgcacg ctcgagcgca aggaagtgca
     3001 cctctaccgc ggcgatttcc agatcgattc cgcgatgccc gagacgcgcg agcagattcg
     3061 tctggccgcg ctcggcgaca aggaggcggc tctcgaggtc gctcgattcc atggcagcgg
     3121 ctcgggcggc gtcgcccgcg acatgaaccg ctatgtgggc tggctgcaat acgccaccgc
     3181 gctcggcaac ggcgcggcga gctacgagtt ggcgctgcac tatcggcgcg aggatcaacc
     3241 ggcactggcc gctccttacg aagcccgcgc cgaagaactc ggctatcggg cgccgccttc
     3301 gctcgaccac gtccgcaaat gacggcgccg gcttcgcggc gccggctcct cagcgcatga
     3361 agatgccgta gggcccgctc gagacgaggt tctggcgccc ggtgtcgatc tggcgcatgc
     3421 gccgttcgag gtcatagatg tcgactgcct gggcgaggta ggcggcgtcc cgatcctgcg
     3481 catcggtcga cgacttgccg aagaagcggg tcagggcatg gaggagggaa ttcatcaaac
     3541 tgctcttggt tttgggaacg gaccaattct aagggaaaac cctagtactc gtcctccagg
     3601 aaccggattc atgcgcctca ccctttcgca attcggcctc gcttacggca tcgctctgct
     3661 ggcgatggcg gccctcgaca ggctctggct cggctggctt gcccgcgatt tctacaagcg
     3721 cgagatgggc gagctgatgg ccgattcgat ccgcatcggg cccgccgcgc tcttctacct
     3781 gctgtaccgc tcggcctcgt ctatctcgcg ctgcaggccc cacccgacgc ggccgccgag
     3841 gcgttcctgc gctgtgcggc ggtcggcctc ctcgcctatg gcgcctccga cctcacgaat
     3901 ctggccatcg tgcgcggctg gagcctgcga ctttgccttc tcgacatggc gtggggaacg
     3961 gcggcctcgg ctctggccgg cggcatcgcc tggctgctcg ccgggcccgc ctcagcgccc
     4021 ggccgctgag gcgggcccgg ccggcggggt ggccgcgacg cgccagatcg tgttgcccac
     4081 gtcgtccgcg accagcagcg cgccgcgctt gtcgatc
//
LOCUS       DASVHM010000808         3822 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_201992, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000808 DASVHM010000000
VERSION     DASVHM010000808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3822
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201992"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..1084
                     /locus_tag="VF308_14800"
                     /pseudo
     CDS             105..1084
                     /locus_tag="VF308_14800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905967.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integron integrase"
     gene            1216..>3822
                     /locus_tag="VF308_14805"
     CDS             1216..>3822
                     /locus_tag="VF308_14805"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="error-prone DNA polymerase"
                     /protein_id="HEX7437974.1"
                     /translation="MLPSYAELHCRSNFTFLTGASHPEELVLRAAQLGYSALAITDEC
                     SVAGVVRAHVEAKAKKLHLIVGSEMRLTLPQGGAAHARLVLLAQTRRGYANLSHWITI
                     ARRRAEKGSYLAHPGDVEGKVPSAPMLAGLPGCLALWVPHAGQPFEEAFVQAMWVKTW
                     FQERAAIALELLYRAGDEELLELVRRVARFTGLPIVAAGDVLMHVRSRKPLQDTLTAT
                     RLAVPVAACGYALEANAEAHLRSRQRLAALYEPEWLERTLVLAGTCGFSLDELRYEYP
                     QEIVPPGETPASHLRTLTYAGVPGRFPHGLAPVHRAQIESELALIEQLKYEPYFLTVA
                     DIVHWARAQGILCQGRGSAANSLVCYCLGVTEVDPRRATLLFGRFISVERNEPPDIDI
                     DFEHQRREEVIQYIYAKYGRHRAALTAVVISYRPRSALRDVGRALGIDLQRIDSVAKS
                     QQWYDGRRIDPDRLRENGFDPEAPVCRLWAALTQQLIGFPRHLSQHPGGFVIAKERMA
                     ELVPVENAAMPDRSVIQWNKDDLDELGLLKVDILALGMLSAIRRALAFMGAKLGREVL
                     MQHIPDDDRPTYDMICAADTVGVFQIESRAQMSMLSRLKPRCYYDLVVEVAIVRPGPI
                     QGGMVHPYLKNRTLRDDEIDCPEELKPALLRTKGVPIFQEQVMQIAMLAADFTAGEAD
                     ALRRAMAAWKRKGGLGPFHERLVGRMVEKGYEREYAERIFKQIEGFGEYGFPESHAAG
                     FALLAYVSSWIKRHHPDAFLAGLLNSQPMGFYAPAQLVRDAREHGVEVLPVDVRFSAA
                     ESVLVAPVSPCGVAALELGEGAPLRAVRLGFDRIGGLPAEAGLRIVAARAEAPFATPE
                     DLARRAHLNAHEL"
BASE COUNT          584 a         1376 c         1309 g          553 t
ORIGIN      
        1 gaaatacagt atttgtggag tgacggaaag tggacaacgg cggtgggggc gacgaggagg
       61 aaagtggacg cgcgggcctg aggccggggc gggtgcctgc gggggtgccg ccgccatcgt
      121 cacggggcga ctctgcggca ccgccgcttc gcctgctcga tgccttgcgc gagcgcctgc
      181 ggtacatgca ttacagctta cgcaccgagg aggcctatgt ctattgggtg cgcggcttcg
      241 tgcagtggtc gggaaggcgg catccgcgcg aactcggagc cgcggaggtc caggcctttc
      301 tcgtgatgct cgccaacgag cgtcgcgtcg cggcggcgac gcaccgccag gccttgagcg
      361 cgctgctctt tctctatcgc gaggtgctcg gcgtcgacat gccgtggatg cgcgaactcg
      421 gccgccccgt gccgaagaag cgcatcccgg tggtcttgac gcacgtggag gtgcaggccc
      481 tgctcgcgcg catgggcgag ggcgtcacgg gcttgctggg ccggctgctc tacggcaccg
      541 gcatgcgcct gctcgaaggc atacgcctgc gcgtcaagga cgtcgatttc gtgcgccaag
      601 tgatcatcgt gcgcgacggc aagggcggca aggatcgcgt cggccgcgcg cgctcgatgc
      661 gccgttgcgc gcgcaggtgc gggccgcgcg gcaggctgac cgcgagcgcg agcaggcggg
      721 cgtctatctg ccgcacgcgc tggcggtcaa ataccagcgc gccgccgaga gctgggcctg
      781 gttctgggtc tttccggcgg ccgccgtcag caaggatccg cgcagcgcgg cgacgcatcg
      841 ccaccatatc cacgaaaagc gcctccagcg cgacctgcgc gccgccgtgc gggccgccgg
      901 catctccaag ccggccaccg tgcacacgct gcgccactcg ttcgccacgc acctgctgca
      961 ggccggcacc gacatccgca cggtgcagca gttgctcggc cacgccgacg tgagcacgac
     1021 catgatctac acgcacgtcc tgaagtccgc cgccgcgggg acggcgagcc cgctcgacgc
     1081 tctgatgatg gacgtcggcg ggagcgacgc ccacgacagg aacgacgaca gcgacgacga
     1141 cgacgccgac ccccacaacc atcaccacca cgtgtccggg cggcaacccc caccgcgcgc
     1201 acccgaaccc ttgccgtgct accgagttac gccgagcttc actgccgcag caacttcacc
     1261 ttcctgaccg gcgcctcgca ccccgaggag ctggtgctgc gcgcggcgca gctcggctac
     1321 agcgcgctcg cgatcaccga cgagtgctcg gtcgccggcg tcgtgcgcgc gcatgtcgag
     1381 gccaaggcga agaagctcca cctgatcgtc ggcagcgaga tgcggctcac gttgccgcaa
     1441 ggcggcgcgg cgcatgcgcg cctcgtgctg ctcgcgcaga cccggcgcgg ctacgccaac
     1501 ctctcgcact ggatcacgat cgcgcggcgg cgtgccgaga aaggcagcta tctcgcgcat
     1561 ccgggcgacg tcgaaggcaa ggtgccgagc gccccgatgc tcgccggcct gccgggttgt
     1621 ctcgcgctct gggtgccgca cgccggccag ccgttcgaag aagcgttcgt gcaggcgatg
     1681 tgggtcaaga cctggttcca ggagcgcgcc gccatcgccc tcgagctgct gtatcgcgcc
     1741 ggcgacgaag agctgctcga gctggtccgg cgcgtcgcgc gtttcacggg cctgcccatc
     1801 gtcgcggccg gcgacgtgct gatgcacgtg cgctcgcgca agcccctgca ggacacgctc
     1861 accgcgacgc ggctggccgt gccggtcgcg gcctgcggct atgcgctcga agccaatgcc
     1921 gaggcgcacc tgcgttcgcg ccagcgtctg gccgcactct acgagcccga gtggctcgag
     1981 cgcacgctcg tgctcgccgg cacctgcggt ttctcgctcg acgagctgcg ctacgaatac
     2041 ccgcaggaga tcgtgccgcc cggcgagacg ccggcgagcc acctgcgcac gctcacttat
     2101 gccggcgtgc ccgggcgctt cccgcacggg ctggcgccgg tgcaccgcgc gcagatcgaa
     2161 agcgagctcg ccctgatcga gcagctcaag tacgagccct acttcctcac cgtcgccgac
     2221 atcgtgcact gggcgcgcgc gcagggcatc ctctgccagg gccgcggcag cgcggccaat
     2281 tcgctggtct gctattgcct cggcgtgacc gaggtcgacc cgcgccgcgc caccctgctg
     2341 ttcggccgct tcatcagcgt cgagcgcaac gagccgcccg acatcgacat cgacttcgag
     2401 caccagcgcc gcgaagaggt catccagtac atctacgcca agtacggccg gcaccgcgcc
     2461 gcgctcaccg ccgtggtcat cagctaccgg ccgcgctcgg cgctgcgcga cgtcgggcgc
     2521 gcgctcggca tcgacctgca gcgcatcgac tcggtcgcga aaagccagca gtggtacgac
     2581 ggccgccgca tcgacccgga tcgcttgcgc gagaacggct tcgacccaga ggcgccggtc
     2641 tgtcgcctct gggccgcgct gacgcagcag ctcatcggct ttccgcgcca cctctcgcag
     2701 cacccgggcg gcttcgtgat cgcgaaagag cgcatggccg agctcgtgcc ggtcgagaac
     2761 gcggccatgc ccgaccgcag cgtgatccag tggaacaagg acgacctcga cgagctcggc
     2821 ctcctcaagg tcgacatcct cgccctcggc atgctgagcg cgatccgccg cgcgctcgcc
     2881 ttcatgggcg ccaagctcgg ccgcgaggtg ctgatgcagc acattcccga cgacgaccgg
     2941 cccacctacg acatgatctg cgccgccgac accgtcggcg tgttccagat cgaaagccgc
     3001 gcgcagatga gcatgctgtc gcgcctgaag ccgcgctgct actacgacct cgtggtcgag
     3061 gtcgcgatcg tgcggcccgg gcccatacaa ggcggcatgg tccatccgta cctgaagaac
     3121 cggacgctgc gcgacgacga gatcgactgc cccgaagagt tgaagcccgc gctgctgcga
     3181 accaagggcg tgccgatctt ccaggagcag gtgatgcaga tcgcgatgct cgccgccgac
     3241 ttcacggccg gcgaggccga cgccttgcgc cgcgcgatgg cggcgtggaa gaggaagggc
     3301 ggcctcggcc cgttccacga gcgtctggtc gggcgcatgg tcgagaaggg ctacgaacgc
     3361 gaatacgccg agcgcatctt caagcagatc gagggtttcg gcgaatacgg ctttccggag
     3421 agccacgccg ccggtttcgc gctgttggcg tacgtgagca gctggatcaa gcgccaccat
     3481 cccgatgcct tcctggccgg cctcctcaac agccagccga tgggcttcta cgcgcccgcg
     3541 caactcgtgc gcgatgcgcg cgagcacggc gtcgaggtgc tgccggtcga tgtgcgcttc
     3601 agcgcggccg agagcgtgct ggtggcgcca gtgtcgccgt gcggcgtggc tgcgctcgag
     3661 ctcggcgagg gcgcgccgct gcgggcggtg cgcctcggct tcgaccgcat cggcggcctg
     3721 cccgcagagg ccgggctgcg catcgtcgcg gcccgtgccg aagcgccctt cgcgaccccc
     3781 gaagacctgg cgcgccgggc ccacctgaac gcgcacgaac tc
//
LOCUS       DASVHM010000809         2873 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_852457, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000809 DASVHM010000000
VERSION     DASVHM010000809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2873
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_852457"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..419)
                     /locus_tag="VF308_14810"
     CDS             complement(<1..419)
                     /locus_tag="VF308_14810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437975.1"
                     /translation="MSVRFSAAATLCVAALIPVSAGAADGDDLQSIRQQIDQLKAAYE
                     GRIQALEARLQELQQRLAANPSGGAAADGRPALAQAAPAQAPAPPAPAMAPAGGGAQG
                     SASAFNPAISLILNGTYANLSRDPANYRLQGFVPSGG"
     gene            complement(497..889)
                     /locus_tag="VF308_14815"
     CDS             complement(497..889)
                     /locus_tag="VF308_14815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437976.1"
                     /translation="MSASFPSLRASSARFRRTLFSVVLLALVLAQTLGLVHRIVHSPL
                     ALHATAPSGAPLTAPASDWLKALFAGHSTEQGCELYDQLGHADFLAVDAVFVPLLHPS
                     EARAPSHPASHLAAQAAAFLARGPPRAS"
     gene            complement(949..1488)
                     /gene="msrA"
                     /locus_tag="VF308_14820"
     CDS             complement(949..1488)
                     /gene="msrA"
                     /locus_tag="VF308_14820"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013542675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEX7437977.1"
                     /translation="MSDSIETITLGGGCFWCTEAVYERVQGVTAVESGYSNGTAIDPS
                     YEQVCSGTTGHNEVVRVRFDPRRISLREILEIFFVIHDPTTLNRQGNDSGTQYRSGIY
                     FHDAAQEEIAREVLAEVNELHRGRAVTEVLPERNYSKAEAYHQHYFANHPNQGYCAMV
                     VAPKVEKFKKTFVAKVVAA"
     gene            1612..2808
                     /locus_tag="VF308_14825"
     CDS             1612..2808
                     /locus_tag="VF308_14825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEX7437978.1"
                     /translation="MKVAFQWDDAFRLEDQLGDEERAVRDAAHDYCQARLQPRVLMAA
                     RHETFDRAIMTELGELGMLGSTIDGYGCPGVNHVSYGLVAREVERVDSGYRSAMSVQS
                     SLVMHPIHAYGNEAQRQKYLPRLATGEWVGCFGLTEPNHGSDPGSMLTRAKPVDGGYS
                     LKGSKMWITNSPIADVFVVWAKLADPDGKVGGQEAIRGFVLEKAMKGLSAPKIEGKMS
                     LRASVTGEIVMDEVFVPAENLLPNVSGLKGPFGCLNKARYGIAWGALGAAEFCWHAAR
                     QYTLDRVQFGRPLAQTQLIQKKLADMQTEITLGLQGCLRVGRLLDEGKAAPEMVSLIK
                     RNSCGKALDIARMARDMHGGNGIHDEYHVIRHMINLETVNTYEGTHDIHALILGRAQT
                     GLQAFF"
BASE COUNT          499 a          969 c          974 g          431 t
ORIGIN      
        1 tcgccgccgc tcggaacgaa gccttgcagc cggtagttcg ccgggtcgcg cgaaaggttc
       61 gcataggtgc cgttgagaat cagcgagatg gccgggttga aggccgaggc cgacccttgg
      121 gcaccgccgc cggcgggcgc catggccggc gcgggcggtg ccggcgcttg cgcgggtgcg
      181 gcttgcgcca gcgctggccg gccgtccgcg gcggcgccgc ccgacgggtt cgccgccagg
      241 cgctgctgca actcctgcag gcgcgcctcg agcgcctgga tgcggccttc gtaggccgcc
      301 ttgagctgat cgatctgctg gcgaatgctc tgcagatcgt cgccatctgc agcacccgcg
      361 gaaaccggga tgagggccgc cacgcacagc gtcgcggcgg ccgagaaacg taccgacatg
      421 gtcactcccc tgaaacgaac tgaaggccga agacacgatc gcgtcccggc gccggtgcgg
      481 cccgagccgc ttcggttcag ctcgcccggg gtggaccgcg cgcgagaaag gccgcggcct
      541 gtgccgcgag atgcgaggcc ggatgcgacg gcgcgcgcgc ttcgctcgga tgcagcaggg
      601 gaacgaacac ggcgtcgacc gccaagaagt cggcatgtcc cagctggtcg taaagctcgc
      661 agccctgctc ggtgctgtgg cccgcgaaca aggcctttag ccaatccgat gccggagcgg
      721 tcaagggcgc gccggacggc gccgtcgcgt gcagcgccag gggcgagtga acgatgcggt
      781 ggacgagacc cagcgtctgc gccaacacga gcgcgagcag gacgacggaa aacagcgtgc
      841 ggcgaaaacg cgcggagctt gcgcgcaatg acgggaagga ggcgctcacg ctgtccagtc
      901 taacaagccc cgcgagggac gatcggcgag cgcgccgccg cgctcgaatc aggcagcgac
      961 cactttcgcg acgaacgtct tcttgaactt ctccaccttc ggcgccacca ccatcgcgca
     1021 gtagccctgg ttcggatggt tcgcgaagta gtgctggtgg taggcctcgg ccttcgaata
     1081 gttgcgttcg gggagcacct cggtcaccgc gcggccgcga tgcagctcgt tgacttcggc
     1141 gagcacttcg cgcgcgatct cttcctgagc ggcatcgtgg aagtagatgc ccgatcggta
     1201 ttgcgtgccg ctgtcgttgc cctgccggtt cagcgtggtc ggatcgtgga tcacgaagaa
     1261 gatctcgagg atctcgcgca gcgagatccg gcgcggatcg aagcgcaccc gcacgacttc
     1321 gttgtggccg gtcgtgccgc tgcagacctg ctcgtagctc ggatcgatgg ccgtgccgtt
     1381 gctgtagccg gattcgaccg ccgtcacacc ctggacacgc tcatagaccg cctcggtgca
     1441 ccagaaacag ccgccgccca gcgtgatggt ctcgatggaa tcactcatgt tcggatcctc
     1501 gttggtggct cgatgcggga ttgtcggcgc gcgcgcggtc gaccccgcaa gccagccttt
     1561 tccaccccgc acccttatca tcggtcgcgt atccagaccc gggacttaca catgaaagtc
     1621 gcattccaat gggacgacgc atttcgcctc gaagaccagc tcggtgacga ggagcgcgcg
     1681 gtccgcgacg cggcccacga ctactgccag gcgcggctcc agccgcgggt gctgatggcg
     1741 gcgcgccacg agaccttcga ccgcgcgatc atgacagagc tcggcgagct cggcatgctc
     1801 ggctcgacca tcgacggcta cggctgcccg ggcgtcaatc acgtcagcta cggcctcgtc
     1861 gcgcgcgaag tcgagcgcgt cgacagcggc taccgcagcg cgatgagcgt gcagagctcg
     1921 ctcgtcatgc acccgatcca cgcctacggc aacgaagccc agcgccagaa gtacctgccg
     1981 cgcctcgcga ccggcgaatg ggtcggctgc ttcggcctca ccgagccgaa ccacggcagc
     2041 gatcccggca gcatgctgac gcgtgccaag ccggtcgacg gcggctactc gctcaagggc
     2101 agcaagatgt ggatcacgaa ttcaccgatc gccgacgtgt tcgtggtgtg ggccaagctc
     2161 gccgaccccg acggcaaggt cggcggccag gaggcgatcc gcggcttcgt cctcgagaag
     2221 gccatgaagg gcctgagcgc acccaagatc gagggcaaga tgagcctgcg cgcgagcgtc
     2281 accggcgaga tcgtgatgga cgaggtgttc gtgccggccg aaaacctgct gccgaacgtg
     2341 agcgggctga agggcccgtt cggctgcctc aacaaggccc gctacggcat cgcctggggc
     2401 gcgctcggcg cggccgagtt ctgctggcat gcggcgcgcc agtacacgct cgaccgggtc
     2461 cagttcggcc gtcctctcgc gcagacccaa ctgatccaga agaagctcgc cgacatgcag
     2521 accgagatca cgctcggcct gcaggggtgt ctgcgcgtcg gccgcctcct cgacgaaggc
     2581 aaggcggcgc cggaaatggt ctcgctgatc aagcgcaaca gctgcggcaa ggcgctcgac
     2641 atcgcgcgca tggcgcgcga catgcacggc ggcaacggca tccacgacga ataccacgtg
     2701 atccgccaca tgatcaacct cgaaacggtc aacacctacg agggcacgca cgacatccat
     2761 gcgctgatcc tcggccgcgc gcagacggga ttgcaggcgt tcttctgaac gcgcggcaac
     2821 ggcgctgccg tcagggctcg ccgtcccagt aatcgaggtc gtccttctcg cgg
//
LOCUS       DASVHM010000810         1853 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1070693, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000810 DASVHM010000000
VERSION     DASVHM010000810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1070693"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..789)
                     /locus_tag="VF308_14830"
     CDS             complement(34..789)
                     /locus_tag="VF308_14830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012429958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7437979.1"
                     /translation="MLVLDKVSKRFGGLSVLEDVSFAVPKGCVFGLIGPNGAGKTTVF
                     NLVTGLIAPTGGAITFGGVSLIGKKPHRITRLGIARTFQNIRVFKEMTLRENVVVGMH
                     THLGYGVPQWLFSLPGYRGAERRAAERAEELLSWVGLDGRASEVADNLSYGGQRRLEL
                     ARALATEPSLLLLDEPVAGMNSGEKDELMAVIGRIVSRGYTVFLIEHDMGFVMGLCER
                     IAVINFGRVIAEGPPEAIRSDPAVIEAYLGREE"
     gene            complement(840..1748)
                     /locus_tag="VF308_14835"
     CDS             complement(840..1748)
                     /locus_tag="VF308_14835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017234879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437980.1"
                     /translation="MSDWLDTFWAIYSNLVLTIGINALLALSIWLTLSCGLLAMANAA
                     FMGLGAYTASLLTMSAGAPFPVAVLAGVALPTVVALMVGLPTLRLSGVYLAMATLGFG
                     EVVRIALLNADSLTGGALGLSGIPQLTQWWHVVLAVLVVLLALRQLRRSRIGRALEAI
                     KEDQVAASLMGVDVMAHKMLAFALGAAIAGLAGALSAHLSSYIGPGEFGFDRGVDILT
                     MTIFGGIGSLTGPVLGAAVITVLPELLRSFRDYRTMINGAILVLVVLFLPKGLWDPAR
                     MRSWFGRKRSYAPTIVADSPSAEGPR"
     gene            complement(1759..>1853)
                     /locus_tag="VF308_14840"
     CDS             complement(1759..>1853)
                     /locus_tag="VF308_14840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011003335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7437981.1"
                     /translation="MRDAVAFGLLFLVLLVRPQGIFGKILERKA"
BASE COUNT          344 a          615 c          642 g          252 t
ORIGIN      
        1 ccagacccga gacttcgagc agcggcgcgg cgttcattct tcgcggccca agtaggcttc
       61 gatcacggcc gggtcgctgc ggatcgcctc cggcggacct tcggcgatga cgcggccgaa
      121 gttgatcacc gcgatgcgct cacacaggcc catgacgaag cccatgtcgt gctcgatcag
      181 gaagacggtg tacccacgcg agacgatgcg gccgatgaca gccatgagct cgtctttctc
      241 gccgctgttc attccggcga cgggctcgtc gagcagcagc aggctgggct cggtggcgag
      301 cgcgcgggcg agttcgagcc tgcgttggcc gccgtaggag aggttgtcgg cgacttcgct
      361 ggcccggccg tccaggccga cccacgagag cagctcctcg gcgcgctcgg cagcgcggcg
      421 ttccgccccg cggtagccgg gaagcgagaa cagccactgc ggcacgccgt agccgagatg
      481 cgtgtgcatg ccgacgacga cgttctcgcg cagcgtcatc tccttgaaga cgcggatgtt
      541 ctggaaagtg cgcgcgatgc cgagccgcgt gatgcgatgc ggcttcttgc cgatcagcga
      601 gacgccgccg aacgtgatcg ctccgccagt cggcgcgatc aggccggtga cgaggttgaa
      661 gacggtcgtc ttgccagcgc cgttcgggcc gatcaacccg aagacgcagc ccttcggcac
      721 ggcgaagctc acgtcctcga gcaccgacag gccgccgaag cgcttggaga ccttgtcgag
      781 gacaagcatc ggcgcgggtg ccgacacagc agaggccgac ggagatgtca atgcggacat
      841 tagcgcggcc cttccgccga cggcgaatcc gccacgatcg tgggcgcgta cgaacgtttg
      901 cgtccgaacc acgagcgcat gcgcgccgga tcccagaggc ccttgggcag gaacagcacg
      961 acgagcacca ggatcgcgcc gttgatcatg gtccggtagt cgcggaagga acgcagcagc
     1021 tcgggcagca cggtaatcac cgccgcgccg aggaccgggc cggtgaggct gccgatgccg
     1081 ccgaagatcg tcatggtgag gatatcgacg ccgcggtcga agccgaactc gccggggccg
     1141 atgtaggagc tcaggtgcgc gctcagcgcg ccggcgagcc ccgcgatggc ggcgccgagc
     1201 gcgaaggcga gcatcttgtg cgccatcacg tcaacgccca tcagcgaggc cgcgacctgg
     1261 tcttccttga tcgcctcaag ggctcggccg atccgtgatc tgcgcagttg ccgcagcgcc
     1321 agaagcacga ccaggaccgc gagcacgacg tgccaccact gcgtgagctg cgggatcccg
     1381 ctcaggccga gcgcgccacc ggtcagggaa tcggcgttga gcagggcgat gcgcacgacc
     1441 tcgccgaaac cgagcgtcgc cattgcgagg tagacgccag acaggcgcag cgtcggcagg
     1501 ccaaccatca gcgcgaccac cgtcggcagt gcgacgccag cgagcacggc gaccgggaac
     1561 ggcgcgccgg cgctcatcgt cagcagcgac gcggtgtacg caccgaggcc catgaaggcg
     1621 gcgttggcca tcgccagcag gccgcacgag agcgtgagcc agatcgaaag ggcgagcagc
     1681 gcgttgatgc cgatcgtcag caccaggttg ctatagatgg cccagaaggt gtcgagccag
     1741 tcgctcatgc gcagagcctc acgccttgcg ctccaggatc ttgccgaaga tgccttgcgg
     1801 gcgaacgagc agcaccagga aaagcagccc gaaagccacg gcatcgcgca tcg
//
LOCUS       DASVHM010000811         2087 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_202681, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000811 DASVHM010000000
VERSION     DASVHM010000811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202681"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1067)
                     /locus_tag="VF308_14845"
     CDS             complement(<1..1067)
                     /locus_tag="VF308_14845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DSD1 family PLP-dependent enzyme"
                     /protein_id="HEX7437982.1"
                     /translation="MRFSGARLGQPAATLETPALVIDLDAMEGNVARMAEFAHTHHMR
                     LRPHAKTHKCAVIAKLQMDAGAVGVCVQKVGEAEALASMGVPDIFISNEVIEPVKLER
                     VAEIAGHVRLAIAVDSALGIQRLAAALKAAGSMAQVFVEIDVGQGRCGVAPVAAGALA
                     HQVVSNGLRFGGLQAYHGRAQHLRGAAEREAAIHNAVRLARAAQASISAAGLVCPLVT
                     GAGTGTFVHEAESGLYGELQPGSYLFMDRDYADNEPSAAAPRFEHSLFVKSQVMSRGL
                     SHAVIDAGHKSHAIDSGLPRVWQRDLEFVNGGDEHGILRLREGALAEGLPALGEAVWL
                     IPGHCDPTVNLHEQFVVVRGGL"
     gene            complement(1064..1783)
                     /locus_tag="VF308_14850"
     CDS             complement(1064..1783)
                     /locus_tag="VF308_14850"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX7437983.1"
                     /translation="MPTTPEHADAHVQQATRIIAVRHGETAWNAEMRMQGQLDIALND
                     VGRWQAERVAAALADERFDAIYSSDLLRAAQTADALARVQGRPVVTDRGLRERCFGVF
                     QGLTFDEVAARWPEQSRRWRQREPDFAPEGAETLREFSARCVGAATRLAAAHPGGSIV
                     LVAHGGVMDCLYRAATRAALQASRSWLLGNASINRLLHTPQGFMLVGWNDTSHLEEAP
                     LDEADEGETRPLAQDRMGYAA"
     gene            complement(1785..>2087)
                     /locus_tag="VF308_14855"
     CDS             complement(1785..>2087)
                     /locus_tag="VF308_14855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HEX7437984.1"
                     /translation="GPSVAVPGFAPARHGLNDYTGWFAANPEMAGDYFGYDGPFPPFN
                     DSLIHHYVFTLLALSIARAPLEGRFNGAEARRALHGHVLAEATHSGTYTLNRRLIG"
BASE COUNT          308 a          737 c          739 g          303 t
ORIGIN      
        1 agcccgccgc ggaccacgac gaactgttcg tggagattca cggtcggatc gcagtggccg
       61 ggtatgagcc agaccgcttc gccgagcgcc ggcaacccct cggccagcgc gccttcgcgc
      121 agccgcagga tgccgtgctc gtcgccgccg ttgacgaatt cgagatcgcg ctgccacacg
      181 cgcggcagac ccgaatcgat ggcgtgcgac ttgtggccgg catcgatgac cgcatgggac
      241 aggccccggc tcatcacctg gctcttcacg aacagcgaat gctcgaagcg cggcgccgcc
      301 gcagacggct cgttgtcggc gtagtcgcgg tccatgaaaa ggtagctgcc gggctgcagt
      361 tcgccgtaga gcccggattc ggcctcgtgc acgaacgtgc cggtgccggc gcccgtgacc
      421 agcgggcaga ccaggccggc tgccgagatg ctcgcctgcg ccgcccgcgc gaggcgcacg
      481 gcgttgtgga tcgccgcttc gcgctcggcc gcgccgcgca ggtgctgcgc gcgcccgtga
      541 taggcctgca ggccaccgaa gcgcaggccg ttcgagacca cctggtgtgc gagcgcgccg
      601 gccgcgaccg gcgccacgcc gcagcggccc tggccgacgt cgatctcgac gaagacctgg
      661 gccatgctgc ccgccgcctt caacgcggcc gcaaggcgct ggatgccgag cgcagaatcg
      721 accgcgatcg cgaggcgcac atggccggca atctccgcga cccgctcgag cttgaccggt
      781 tcgatgacct cgttgctgat gaagatatcg ggcacgccca tcgatgcgag cgcctcggcc
      841 tcgccgacct tttgcacgca cacgccgacc gcgcccgcgt ccatctgcag cttcgcgatt
      901 accgcgcact tgtgggtctt cgcgtgcggc ctgaggcgca tgtggtgggt gtgcgcaaac
      961 tcggccatgc gcgcgacgtt gccctccatc gcgtcgaggt cgatcacgag cgcgggcgtc
     1021 tccagcgtgg ccgccggctg gccgaggcgg gcgccggaga atctcacgcc gcgtacccca
     1081 tccggtcttg ggcgagaggg cgcgtttcgc cctcgtcggc ttcgtcgagc ggcgcctcct
     1141 cgaggtggga ggtgtcgttc cagccgacca gcatgaagcc ctgcggcgta tgcagcaacc
     1201 ggttgatgct ggcgttgccc agcaaccagg aacgcgacgc ctgcagcgcc gcgcgggtcg
     1261 ccgcgcgata gaggcaatcc atcaccccgc catgggcgac cagcacgatc gagccgcccg
     1321 gatgggcggc ggccagacgt gtcgcggcgc cgacgcagcg cgccgagaac tcgcgcagcg
     1381 tctcggcgcc ctccggcgcg aaatcgggct cgcgctggcg ccagcgccgg ctctgctcgg
     1441 gccagcgcgc tgcgacctcg tcgaaggtga gcccctgaaa cacgccgaag cagcgctcgc
     1501 gcaggccccg gtcggtgacg accggtcggc cctggacgcg cgccagcgca tcggccgtct
     1561 gcgcggcacg cagcaggtcg ctcgaataga tcgcgtcgaa gcgctcgtcg gcgagggccg
     1621 cggcgacgcg ctcggcctgc cagcggccga catcgttgag ggcgatatcg agctggccct
     1681 gcatccgcat ctcggcgttc caggccgttt cgccatggcg gacggcgatg atccgcgtcg
     1741 cctgctggac gtgcgcatcg gcgtgctccg gcgttgttgg cacttcagcc aatcagccgg
     1801 cgattgagcg tgtaggtgcc cgaatgcgtc gcctcggcga ggacatggcc gtgcaaggcc
     1861 cgccgcgcct cggcgccgtt gaaccggcct tcgagcggcg cccgtgcgat cgagagcgca
     1921 agcagcgtga acacgtagtg atggatcagc gaatcgttga acggcgggaa cggtccgtcg
     1981 tagccgaagt agtcgccggc catctcgggg ttggcggcga accagccggt gtagtcgttg
     2041 aggccatggc gcgccggcgc gaaaccgggc acggcgaccg atggtcc
//
LOCUS       DASVHM010000812         2883 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_131621, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000812 DASVHM010000000
VERSION     DASVHM010000812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2883
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131621"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..482
                     /locus_tag="VF308_14860"
     CDS             <1..482
                     /locus_tag="VF308_14860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HEX7437985.1"
                     /translation="AVFGGDGAVVATDFSLSQRVLAVQRAALGQLMSDAVAARIIDGQ
                     DKAVRAADAFQLSELYGRLQREIWSELASHAEIAPARRELQREHVNRVAAAVLRPGGS
                     SRADTRSLLRIQAQALLAQIQAALGRGSYRADSAAHLQDSADTLAQALSARLQRLGV"
     gene            479..2362
                     /locus_tag="VF308_14865"
     CDS             479..2362
                     /locus_tag="VF308_14865"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009665559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEX7437986.1"
                     /translation="MTRPVRAIVALIASIGMSLAAVAARAESGADRWNLGDLYANAAA
                     WDADVARLESQLGELAACRGHLGDSSPRFSACLDLRADAAKRFYRLSLFAGEKHAEDT
                     GDAPSLTLEQRAELIGHRLEEAEAFFEPEILRLGADRVALFVAQEPALRIHRFPLDRI
                     LRAAPHTLDEAGEALVAKFALMGGVGASAYGVLSDADMPWPKVKLAGGAEIVLDQSAY
                     TKYRESADRADRKRVMDAFFATWKGFERTSGVLLSAQLKQDTAYSRVRRYPDSISRAL
                     DRQRIPVAVVDTLIAQTNANLPTLHRYFRLRARMLGVGDMRYFDIYPPLVHGDYRFAL
                     DEARQLVLETAAPLGADYVAALGSGLQSRWMDAYPRPKKQSGAHMAGYAYDVHPYVLM
                     NYNDDYESVTILAHEWGHAMHSVLANRGQPFVTANYATFIAEIASTLNEELLLDRMLK
                     AAKTDDERLYYLGESLEGLRGTFFRQAMFAEFERDIHARSDRGEPLTGDAFTKSYCEL
                     LKRHHGAPQGVVAIDDAYCIEWAYIPHFYTSFYVYQYATSIAASALFAERIVGGDKAA
                     LGRYLDMLKAGGSDYPYELVKTAGVDLATPAPYQALVARMNRIMDDIEAILAKRRPGQ
                     APS"
     gene            complement(2422..>2883)
                     /locus_tag="VF308_14870"
     CDS             complement(2422..>2883)
                     /locus_tag="VF308_14870"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX7437987.1"
                     /translation="VSNLAACYTEGIDAIGAGKTEVGASIWKQCFAEDVSFTLSFGPS
                     FSVTCPSDKCPMPATMSGLQKRVAMARGTYDRSGYVATSHHINTLGVHSVQGDSGRIK
                     GHLQAWHVRKDGATVLGLGTWEVDVRKTAAGWRIVNEKLESPLRVVMPKAE"
BASE COUNT          467 a         1008 c          918 g          490 t
ORIGIN      
        1 aggctgtctt cggcggggat ggcgcggtgg tcgccaccga cttctcgctt tcgcaacgcg
       61 tcctcgcggt gcagcgggcc gccctcggcc agctgatgag cgacgcggtg gccgcgcgca
      121 tcatcgacgg ccaggacaag gcggtgcgcg ccgcggacgc gttccagctc tcggaactct
      181 acggccgcct gcagcgcgaa atctggagcg agctcgcgag ccacgccgag atcgcgccgg
      241 cacgccgcga gctgcagcgc gagcacgtca accgggtcgc ggcggcggtg ctgcggcccg
      301 gcggctcgag ccgcgccgac acgcgcagcc tgttgcggat ccaggcgcag gcgctgcttg
      361 cgcagatcca ggctgctctc ggtcgcggca gttaccgcgc cgatagcgcg gcccatcttc
      421 aggacagcgc cgacacgctg gcgcaggcgc tgtcggctcg cctgcaaagg ctcggcgtat
      481 gacgcgtccc gttcgcgcga tcgtcgcgct gatcgcgagc atcgggatgt ccctggcggc
      541 ggtcgcggcg cgcgccgaat cgggcgccga tcgctggaac cttggtgatc tttacgcgaa
      601 tgccgcggcc tgggacgcgg acgtcgcgcg gctcgagtcc caactcggcg aactggccgc
      661 gtgccggggt catctcggcg acagctcgcc gcgtttctcg gcctgcctgg acctgcgcgc
      721 cgatgcggcc aagcgcttct atcgcctgag cctgtttgcc ggcgagaaac atgccgaaga
      781 caccggcgac gcgccgagtc tcacgctcga gcagcgcgcc gaactgatcg gtcaccgact
      841 cgaagaagcc gaggcgttct tcgagcccga aatcctgcgc ctgggtgcgg accgggtggc
      901 gctgttcgtc gcccaggaac cggccctgcg cattcatcgc ttcccgctcg atcgcatcct
      961 gcgcgccgcg ccgcacacgc tcgacgaggc cggcgaggcg ctggtcgcga agttcgcgtt
     1021 gatgggcggc gtcggcgcct cggcgtacgg cgtgctctcg gacgcggaca tgccatggcc
     1081 gaaagtgaag ctggcgggcg gcgcagagat cgtgctcgac cagtcggcct acacgaagta
     1141 tcgggagtcg gccgaccgtg ccgatcgcaa gcgtgtgatg gatgcgttct tcgcgacctg
     1201 gaaggggttc gagcgcactt ccggcgtgtt gctgtcggcg cagctcaagc aggacaccgc
     1261 ctacagccgc gtgcgacgct atcccgattc gatttcgcgc gccctcgacc gccagcgcat
     1321 tccggtcgcc gtggtcgaca cgctgatcgc ccagaccaac gcgaacctgc cgaccctgca
     1381 tcgctatttc cgcctgcgcg ctcgcatgct cggggtcggc gacatgcgct acttcgacat
     1441 ctatccgccg ctcgtgcatg gcgactaccg cttcgcgctg gatgaggcgc gccagctcgt
     1501 cctcgagacg gccgcgccgc tcggcgccga ctatgtcgcg gcgctgggca gcggcctgca
     1561 aagccgctgg atggacgcct acccgcgccc gaaaaagcaa tccggcgcgc acatggccgg
     1621 ctacgcctac gacgttcatc cgtacgtgct gatgaactac aacgacgact acgagtcggt
     1681 caccatcctg gcccacgaat gggggcatgc gatgcattcg gtgctggcga atcgcgggca
     1741 gccgttcgtc acggccaact acgcgacctt catcgccgag atcgcgtcga ccctcaacga
     1801 ggagctgctg ctcgaccgca tgctcaaggc ggcgaagacc gacgacgagc gcctctacta
     1861 ccttggcgaa tcgctcgaag gcctgcgcgg cacgttcttc cgtcaggcga tgttcgccga
     1921 gttcgaacgc gacatccacg cccgttcgga tcgcggcgag cccctcaccg gcgatgcctt
     1981 caccaagagc tactgcgagc tcttgaaacg ccatcatggc gcgccccagg gggtggtcgc
     2041 gatcgacgac gcctattgca ttgagtgggc ctacatcccg cacttctaca catcgttcta
     2101 cgtgtaccag tacgcgacct cgatcgcggc gagtgcgctc ttcgccgaac gcatcgtcgg
     2161 cggcgacaag gccgccctcg ggcgctatct cgacatgttg aaggcaggcg gctccgacta
     2221 tccctacgag ctcgtcaaga ccgccggcgt cgacctggca acgcccgcgc cctaccaggc
     2281 gctggtcgcg cgcatgaacc ggatcatgga cgacatcgaa gcgatcctcg ccaagcgccg
     2341 tcctggccaa gcgccgtcct gattagcaat gagcctcagc attgggcctt ggtgaaggcc
     2401 tcgacgagct cttgtggtgg cttactcggc cttcggcatc accacccgca ggggactctc
     2461 tagcttctcg ttcacgatgc gccagccagc cgccgtcttc ctcacatcca cttcccaagt
     2521 tccaagaccg agcactgttg cgccatcttt gcgcacatgc caagcctgga ggtgaccctt
     2581 gattcggcct gaatcgcctt gcacactgtg cacaccaagc gtgttgatgt ggtggctggt
     2641 ggccacatag ccggaccggt cgtacgtgcc ccgcgccatc gccacgcgct tctgcaggcc
     2701 actcatcgtc gcaggcatcg ggcacttgtc actgggacag gtcactgaaa aagagggccc
     2761 gaaactcagc gtgaagctca catcctcggc gaagcactgc ttccagatgc tggcgccgac
     2821 ctccgtcttt cccgcaccga tggcatcgat gccttcggtg tagcaggccg caagattgga
     2881 cac
//
LOCUS       DASVHM010000813         7248 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_563904, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000813 DASVHM010000000
VERSION     DASVHM010000813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7248
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_563904"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(622..1077)
                     /locus_tag="VF308_14875"
     CDS             complement(622..1077)
                     /locus_tag="VF308_14875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7437988.1"
                     /translation="MIAHVTEGVGPTASPGAASAALPAADAWRLAAKRHDDLFAPLDP
                     GARIGLLARSAPTHVLVWEAGDRGIDAWIAPFAGYSATAADIVLAADDESLAEVRAAG
                     DGALFEVLRAGIRSGHIVCYMLKRRCVLEERGFDELLDALGFAFMGACR"
     gene            complement(1074..3044)
                     /locus_tag="VF308_14880"
     CDS             complement(1074..3044)
                     /locus_tag="VF308_14880"
                     /inference="COORDINATES: protein motif:HMM:NF012927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7437989.1"
                     /translation="MQPGVAKLPHLFQPGRFGRFEIKNRIKYGACCVSNYNTRDGFIT
                     EREIARMRVIARTGCGIITNQGAYPDPLGEGKAYFRQVAIFDDRFLPQFERIAHDIKA
                     QGAMAIQQILHAGRYGGIDLGYCIQPSDVPQTLPHFRPPKVMTKEEIRDCIRQHAEAA
                     QRAIRAGFDGTEVTSFMGYLLANFNSRFTNQRSDEYGGSIENRGRFMRELIDGIKQAT
                     PEHPLVVRLNGAELMDKWGGNTEDECFELMQQAVDVGVDMISVTVGWQEAPESSIGRD
                     IPPGYWNYLSERAKKMFPSTLITFGNRLPDPRMADDCLRDGIFDYWEVCRPLLADPEL
                     IHKAAEDRLDEVRRCIGSLNCLSRLFRDLPYTCTMNPALGHEVEPEYQVTPAAVKKKV
                     MVIGAGPAGMECAITAAKRGHDVTVFDKSERIGGNLYAYAMNDLARPDDLLSVISHYE
                     AVSKKLGIEIRLKTEVHAKFMRSVLHQYDVCVVAAGATVDRSRVAHIEGSDKMVDALD
                     VAHGRVKVGQRVVVVGGGKVGLTLAESLRKRDNATVTVVEADKRIAGDVKPSFKWRHA
                     SWVEELGIPCLTSTTVVKVADNGVTVRSAKGVESFIEADSVVLAAGAAPAHALFHEFE
                     WMVDELHGVGDAMIPRGLEQAIQEGFRLGVRL"
     gene            complement(3083..4237)
                     /locus_tag="VF308_14885"
     CDS             complement(3083..4237)
                     /locus_tag="VF308_14885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017524329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX7437990.1"
                     /translation="MKIRIVGAGPAGLYFAALMKRTDSSHDIALVERGPRDATWGFGV
                     VFSDRALEFLRADDEDLYRYLTPHFESWPEIAIVHNGTRVPVAGNGFSSIGRLELLTL
                     LYAYVERLGVPIRFETEATSLDEFADADLVVGANGAFSWIRSENEAKFGTTVDWRPNR
                     FIWYGTTKAFNSLTLTFRETALGVFCAHHYRYHPDRSTFLVEVTDATWRRAGFDRMSA
                     AETLSACERVFAPDLEGHPILSNNSIWRQFPAVWNERWSVGNVVLLGDALRTAHFSIG
                     SGTRLAMEDAVALHKAFTACGDDVPAALARFQAERLPPMKKIWDAANASLRWYERMDE
                     LVPALTPVELAYSYMTRTGRVDHAEVRRRDPGLARAFEALHPELAGRPIE"
     gene            complement(4275..5936)
                     /locus_tag="VF308_14890"
     CDS             complement(4275..5936)
                     /locus_tag="VF308_14890"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7437991.1"
                     /translation="MIEGFTPWPPDVAARYRAAGLWEGRTIAAVVAASASARHDKLAV
                     VDGERKVTYSQLVALVDRLAARLKREGLVASDRVVMQLPNSLEFVVAYLALTRIGAIH
                     VMALRAHRETEITHFVRASGATACMVPGVLQRFDHRAMAQAVAARCPTLKAIFVLGEP
                     LNGQRALQPLIDEPLAPQTVAAELAGLRVDPGEVATMLLSGGTTSLSKLIPRTHDDYV
                     LNAKACAQAAGFDEHTVLLAVLPLGHNYNLASPGMLGAFYYGGTVVIAPAMDADTVFP
                     LVERHRVTVIPAAVPLVTAWLESGVPARCDLASLKVMQNGGARLAPELRQRVRERFGC
                     VPQEVYGTAEGLINMTRLDDPDELLLESSGAPVCDADEIKVLDDEGRALPDGEAGELV
                     ARGPYTIRGYYGAPEKNREAFTPDGFYRMGDVVRKRGRYVWAEGRKSDLINRGGEKIS
                     CEEVENLIFKHPAVHHVALVAMPDPTFGEKACAFVATKPGMTLTFDELIAFLKQQRIA
                     SFKLPERLELVDKLPTSLVGKVLKRQLRESIVAKIASESGGAPRA"
     gene            6091..7026
                     /locus_tag="VF308_14895"
     CDS             6091..7026
                     /locus_tag="VF308_14895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015013727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX7437992.1"
                     /translation="MQGPDLNLLVVFSQLYQDRKVSLAAQNLGLSQPTVSAALARLRT
                     MMNDELFVRTARGMQPTPLAERIAAPLGRSLADIRHTLATQASFDASTATRQFSLAMT
                     DIGEFHFLPRLVAALEAAAPQLSISTVRGTAVNLKFEMEAGRIDLALGFLPDLVNGFH
                     RRVLFTQRYVCLYRCGHPMAERPTDLAIYAACQHAVVVSAGTGHGHAEQVVERCGLNR
                     FVRLRVPHYVALADVLEATDLVATVPEAFALRSVKHFDLAYSAHPIELPPIEIALYWH
                     TKYQRDRANRWMRNLIIRLFQLNVAADNTRSADRD"
BASE COUNT         1159 a         2486 c         2378 g         1225 t
ORIGIN      
        1 aactaccgct tatggccgtc agccgctgtt ccccatgctc accggaagca ggcattgccg
       61 ctccaggccc tgaccacgag ggacagctta ctggcgccga tcccgagttc acgctttcgg
      121 ccaggtgctg tcattcagga atcaaggcgt tcaggtcggc aacgaccgct cccaaggtac
      181 agcagtcgta gctcggcgtc ccagcgcggc gtcgatatct caaggccgtc actcacggac
      241 ttgtcgtggc catcggcatc ggtggccttt cgaacgtccg tagacagagg cggcgaactc
      301 gcgcagccaa tccggagtct tcaggcgaat tcgaatcgat gagccactca tcgaccggtc
      361 agcaggcgcg cgccgccccg atcgaccccg gccgtcaatc gatcgtggct caaggcaatc
      421 cacccgcgtt cgaacctccg gccggtactt gcgccgcacg ccgcgccgcg gcatacgcct
      481 cgaccgtgcg gcggaattcg tcttgtgctt cgggcgtgac ctgcgatcca cattcgtagc
      541 aggtgccgct catgcgatcg aaccagcggc agccgcactc gtcgcaggca agctcggggg
      601 caccggacgg gttcgtgaag atcatcggca cgcccccatg aacgcgaagc cgagcgcgtc
      661 gagcagctcg tcgaacccgc gttcctcgag cacgcagcgg cgcttgagca tgtagcagac
      721 gatgtggccc gagcggatgc cggcgcgcag cacctcgaac agcgcgccgt cgcccgccgc
      781 ccgaacctcc gcgagcgact cgtcatctgc cgcgaggacg atgtctgcgg cggtcgcgga
      841 atagcccgcg aatggcgcga tccacgcgtc gatgccacgg tcgcctgcct cccagacgag
      901 gacatgcgtg ggtgccgagc gcgcgagcaa tccgatccgc gcgcccgggt cgagtggggc
      961 gaacagatcg tcgtgacgct tggcggccaa acgccatgcg tcggctgctg gcagcgcggc
     1021 cgacgcggcg cctgggcttg ccgtcggacc gaccccttca gtcacatgcg cgatcacaac
     1081 ctcaccccta gcctgaagcc ctcttggatg gcctgctcga gcccgcgggg aatcattgcg
     1141 tctccgacgc cgtgcagctc gtcgaccatc cactcgaact cgtggaacag cgcatgtgcg
     1201 ggcgccgcgc ccgccgccag gacgacgctg tcggcttcga tgaagctctc gacacccttc
     1261 gcgctgcgca ccgtgacgcc gttgtcggcc accttgacca ccgtcgtcga ggtcaggcac
     1321 ggaatgccga gttcctcgac ccacgacgcg tggcgccact tgaaggacgg cttgacgtcg
     1381 ccggcgatcc gtttgtcggc ctcgacgacg gtgacagtgg cgttgtcgcg cttgcgcagc
     1441 gactccgcga gcgtcagccc gaccttgccg ccgccgacga cgacgacgcg ctggccgacc
     1501 ttgacgcggc cgtgtgcgac gtcgagcgcg tcgaccatct tgtccgatcc ttcgatgtgc
     1561 gcgacgcggc tgcggtcgac cgtggcgccg gcggcgacga cgcagacgtc gtactggtgc
     1621 agcacgctgc gcatgaactt cgcgtgcacc tcggtcttca gtcgaatctc gatcccgagc
     1681 tttttcgaga ccgcctcgta gtgtgagatc accgacagca ggtcgtccgg gcgtgctagg
     1741 tcgttcatcg cgtacgcata gaggttgccg ccgatccgct ccgacttgtc gaagacggtg
     1801 acgtcgtggc cgcgcttcgc ggcggtgatg gcgcactcca tgccggccgg cccggcgccg
     1861 atgaccatca ccttcttctt caccgccgcc ggcgtcacct ggtactccgg ctcgacctcg
     1921 tggccgagcg ccgggttcat cgtgcaggtg tacggcaggt cgcggaacag gcgcgacagg
     1981 cagttcagcg agccgatgca gcgccgcacc tcgtcgagcc ggtcttcggc ggccttgtgg
     2041 atcagctccg ggtcggccag cagcgggcgg cagacctccc agtagtcgaa gatgccgtcg
     2101 cgcaggcagt cgtcggccat gcgcgggtcc ggaagccggt tgccgaaggt gatcagcgtg
     2161 ctcggaaaca tcttcttcgc gcgctcggac aggtagttcc agtagccggg cggaatgtcg
     2221 cggccgatcg acgactcggg cgcctcctgc cagccgacgg tgacgctgat catgtcgacc
     2281 ccgacgtcga ccgcctgctg catcagctcg aagcactcgt cctcggtgtt gccgccccac
     2341 ttatccatca gctccgcgcc gttcaggcgc acgacgagcg ggtgctccgg cgtcgcctgc
     2401 ttgatgccgt cgatcaactc gcgcatgaag cggccgcggt tttcgatcga gccgccgtac
     2461 tcgtcgctgc gctggttggt gaaacgcgaa ttgaagttcg cgagcaggta gcccatgaag
     2521 ctcgtcacct cggtgccgtc gaagccggcg cggatcgcgc gctgcgccgc ctcggcgtgc
     2581 tggcggatgc agtcgcggat ttcctccttg gtcatcacct tcggcgggcg gaagtgcggc
     2641 agcgtctgcg gcacatcgga cggctggatg cagtagccca ggtcgatgcc accgtagcgc
     2701 ccggcatgca ggatctgctg gatcgccatc gcgccttgcg ccttgatgtc atgcgcgatg
     2761 cgctcgaact gcggcaggaa cctgtcgtcg aagatcgcga cttggcggaa ataggccttg
     2821 ccctcgccga gcggatcggg gtatgcgccc tggttcgtga tgatcccgca gccggtgcgc
     2881 gcgatcacgc gcatgcgagc gatctcgcgc tcggtgatga agccgtcgcg cgtgttgtag
     2941 ttcgacacgc agcaggcacc atacttgatg cggttcttga tctcaaagcg gccgaagcgg
     3001 ccgggttgaa acaagtgcgg aagcttggcg acgccgggtt gcatgtgctt gtctcctggt
     3061 tgtgtggcga gcgggagcga tgctattcaa tggggcggcc ggccagttct ggatgcagcg
     3121 cctcgaatgc gcgcgccagt cccggatcgc gccgacgtac ttcggcatgg tcgactcgac
     3181 cggtgcgcgt catgtagctg tacgccagct cgaccggtgt gagcgccggc acgagctcgt
     3241 ccatgcgctc gtaccagcgc aggctggcgt tggctgcatc ccagatcttc ttcatcggcg
     3301 gcagtcgttc ggcctggaat cgcgccaacg ccgccggcac gtcgtcgccg cacgcggtga
     3361 aggccttgtg cagcgccacc gcgtcctcca tcgccagccg cgtgcccgaa ccgatcgaaa
     3421 aatgcgcggt gcgcagcgca tcgcccagca acacgacgtt gccgacgctc cagcgttcgt
     3481 tccacaccgc cgggaactgg cgccagatcg agttgttcga caggatcggg tggccttcga
     3541 ggtcgggggc gaagacacgc tcgcaggctg agagggtctc ggcagcgctc atccggtcga
     3601 accctgcgcg gcgccacgtt gcatcggtca cttcgacgag aaaggtgctg cggtcggggt
     3661 ggtagcgata atggtgcgcg cagaagacgc cgagagcggt ttcgcggaac gtcagcgtca
     3721 ggctgttgaa cgccttggtc gtgccgtacc agatgaagcg gttcggccgc caatcgaccg
     3781 tcgtgccgaa cttcgcttcg ttctcgctgc ggatccacga gaacgcgccg ttcgccccga
     3841 cgacgagatc ggcatcggcg aattcgtcga gcgacgtcgc ctcggtctcg aagcggatcg
     3901 gcacgcccag tcgctcgacg tacgcgtaca gcagcgtcag cagttcgagc cgtccgatcg
     3961 acgagaagcc gttaccggcg accggcacgc gggtgccgtt gtggacgatc gcgatctcgg
     4021 gccagctctc gaaatgcggc gtcaggtaac ggtagaggtc ttcgtcgtcg gcgcgcagga
     4081 actcgagcgc gcggtcggag aacacgacgc cgaagcccca ggtcgcgtcg cgcgggccgc
     4141 gttcgaccag tgcgatgtcg tgcgacgagt cagtgcgttt catcagcgcc gcgaagtaca
     4201 ggccggcagg tccggcgccg acgatccgga tcttcattgg ggtgcgcctt gctctggctt
     4261 gatcgaggcg tccgtcatgc acgcggtgcg ccgccactct cgctcgcgat cttcgcgact
     4321 atcgactcgc gcaattgccg cttgagcacc ttgccgacca ggctggtcgg cagcttgtcg
     4381 acaagctcga gccgctcggg cagtttgaag ctcgcgatcc gctgttgctt caggaacgcg
     4441 atcagctcgt cgaaggtcag cgtcatcccg ggcttcgtcg cgacgaacgc gcacgccttc
     4501 tcgccgaagg tcgggtcggg catcgcgacg agcgcgacgt ggtgcaccgc cggatgcttg
     4561 aagatcagat tttcgacctc ctcgcacgag atcttctcgc cgccacggtt gatcaggtca
     4621 ctctttcgcc cctcggccca gacatagcgg ccgcgcttgc gcacgacgtc gcccatgcgg
     4681 tagaagccgt cgggcgtgaa cgcctcgcga ttcttctccg gcgccccgta gtagccgcgg
     4741 atcgtgtacg gcccgcgggc aaccagctcc cccgcctcgc cgtcgggcaa cgcgcggccc
     4801 tcgtcgtcga gcaccttgat ctcgtcggcg tcgcacaccg gcgcgcccga gctctcgagc
     4861 agcagctcgt ccggatcgtc gaggcgcgtc atgttgatca ggccttcggc ggtgccgtag
     4921 acctcctgcg gcacgcagcc gaatcgctcg cggacgcgct gccgaagttc cggcgccagc
     4981 cgcgccccgc cgttctgcat caccttcagc gacgccaggt cgcaacgggc cggcacacca
     5041 gactccagcc aggcggtgac gagcggcacg gccgccggga tcaccgtgac gcgatgccgc
     5101 tcgacgagcg ggaataccgt gtcggcatcc atcgccggcg cgatcacgac cgtgccgccg
     5161 tagtagaagg cgccgagcat tcccggcgac gccaggttgt agttgtggcc gagtggcagc
     5221 accgccagca gcacggtgtg ctcgtcgaaa ccggcggcct gggcgcaggc cttcgcgttg
     5281 agcacatagt cgtcgtgcgt gcgcgggatc agcttcgaca acgacgtcgt gccgcccgac
     5341 agcagcatcg tcgcgacctc gcccgggtcg acgcgaaggc cggcgagctc cgcggcgacc
     5401 gtctgcggtg ccagcggttc gtcgatcagc ggctgcagcg cgcgctgccc gttcagcggt
     5461 tcgccgagca cgaagatcgc cttcaacgtc gggcaccgcg cggcgaccgc ctgcgccatc
     5521 gcccggtggt cgaagcgctg cagcacgcca ggcaccatgc atgcggtcgc gcccgaggcg
     5581 cggacgaagt gcgtgatctc ggtctcgcgg tgcgcgcgca gcgccatcac gtggatcgcc
     5641 ccgatcctcg tcagcgcgag gtacgcgacg acgaactcca gcgagttcgg cagctgcatc
     5701 acgacgcggt cgctggcgac cagcccttcg cgcttcagcc gcgcggccag ccggtcgacc
     5761 agggcgacga gctgcgaata agtcaccttc cgttcaccgt cgacgaccgc gagcttgtcg
     5821 tgtcgcgccg acgcgcttgc ggcgacgacc gcggcgatcg ttcgaccttc ccacagcccg
     5881 gcggcgcggt agcgcgccgc gacatcgggg ggccaggggg tgaatccttc gatcatgtcg
     5941 tcctcctcat cgcagtcgca ggccacgcgg gcgctgcgac tgcgtcgcgg cactgtaggc
     6001 gcatcggtcg ccgtgagcga caaagaatgc gaatatcgcc gatagacaaa tcgacatccg
     6061 ccgaaaccgc cacgagcaga ataggcgtct gtgcagggac ccgatctcaa cctgctggtg
     6121 gtgttcagcc agctctacca ggaccgcaag gtgtcgctcg cggcgcagaa cctcgggctg
     6181 tctcagccga ccgtcagcgc agcgctcgcg cgcctgcgca cgatgatgaa cgacgagctg
     6241 ttcgtccgca cggcgcgcgg catgcagccg acgccgctcg ccgagcggat cgccgcgccg
     6301 ctgggccgtt cgctcgccga catacgccac acgctggcga cgcaggcgag tttcgacgcg
     6361 tcgacggcga cgcgccagtt ctcgctcgcg atgaccgaca tcggcgagtt ccacttcctg
     6421 ccacgcctgg tcgccgcgct cgaggcggcg gccccccaac tgtcgatcag cacggtgcgc
     6481 ggtaccgcgg tcaacttgaa gttcgagatg gaggccggcc gcatcgacct ggcactcggc
     6541 ttcctacccg acctcgtgaa cggctttcat cgccgcgtcc tcttcacgca gcgttacgtg
     6601 tgcctgtacc gttgcggcca tccgatggcc gaacggccga ccgacctcgc catctatgcg
     6661 gcgtgccagc acgcggtcgt cgtatccgcc ggcaccggcc acggccacgc cgagcaagtc
     6721 gtcgagcgct gcgggctgaa tcgcttcgtg cgcctgcggg tgccgcacta tgtggcgcta
     6781 gccgacgtgc tcgaggcgac ggaccttgtc gccaccgtgc ccgaggcatt cgcgctgcgc
     6841 agcgtgaagc acttcgacct cgcgtacagc gcccatccga tcgaactgcc gccgatagag
     6901 attgcgctct attggcacac gaagtatcag cgcgaccgcg cgaatcgttg gatgcgcaat
     6961 ctgatcatcc ggctcttcca gctcaatgtc gctgcggaca acacaaggtc cgccgaccgc
     7021 gactgagcga tggagttcac gccttgctga agaggttctg cccgttcgac gtgagggccg
     7081 cgtcaagccc taagagggcc gacgaaacgt cgaagatggc ctgggtcggt cgaccagcaa
     7141 tcgactgctg ccgccaagct ccgatttgcc caaggagttc ggcgagcgcc cagttccagg
     7201 gtggaccggt cagttaacca gaagattgcc acaggcgcca ttgggtcg
//
LOCUS       DASVHM010000814         6624 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_709834, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000814 DASVHM010000000
VERSION     DASVHM010000814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6624
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_709834"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1459)
                     /locus_tag="VF308_14900"
     CDS             complement(<1..1459)
                     /locus_tag="VF308_14900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007851221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HEX7437993.1"
                     /translation="MKQNRSASSLAALTLGAVGVVYGDIGTSPLYALKEVFADGRVPL
                     TTANIYGVLSLVFWTLTVIVSIKYVVLILRADNNGEGGLIAMLALASQAVKDRPKLRQ
                     RLLFVGIFGTAIFFGDGVITPAISVLSAVEGLEVAAPGLHAYIVPITLCVLTGLFMVQ
                     RHGTTRVGKLFGPVTAVWFVVLTVMGLEHVAENPAVLWALSPHYALVFLLAHSGIAFI
                     ALGSVVLCVTGAEALYADLGHFGKRPIRLAWFSLVMPALVINYFGQGAMLLAHPERVK
                     NPFYEMAPTWALYPLIGLATCATVIASQALITAAYSVTKQAIQLGYLPRLRILHTSVR
                     ETGQIYLPFVNWGLYGCIVLAVVLFGSSSRLAAAYGIAVTIDMLITTTMTFFVIRYGW
                     KYPWPLAFAATGFFFLVDFTYFAANVVKVVDGGWFPLLIGAIMFTLMMTWKQGRKLMS
                     ESLRNDAIDLTSFLESVFLSPPQRVPGTAVFLVSDQ"
     gene            1600..2850
                     /locus_tag="VF308_14905"
     CDS             1600..2850
                     /locus_tag="VF308_14905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006576267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7437994.1"
                     /translation="MKRTELTRIQSWAILCGAAAMLSLAMGMRQSLGLFQPQMIRDIG
                     VTAAQFSLAIAIQNIVWGVTQPFVGMLADRWGARPVAVTGVLTYSAGLGVAIGAHSAW
                     VLTLGVGICIGLALSCTASNIAMNVTARTVAPARRSVAMGAVSSVGSIGLMLAAPLAQ
                     SLLTSNGWQVALVAFLGLAAVMLPAAWIAGSADKIAIDAAGTAQSVGQAVREAAGHTG
                     YVVMAVAFFVCGLQLVFLTTHLPTYLEICGMDPGLGAKALATIGLFNVGGSYLFGWLG
                     GRYSKRGLLGGIYVLRSLFMVGYFIVRPSPASTLVFAAAMGTLWLGVVPLVSGLVVHL
                     FGLRYMATLSGIAFFSHQLGSFVGAYGGGLIYSAMGSYEWAWKGAVAIGIAAGLFQMT
                     MNVRPSARILAERSGASGPRPATA"
     gene            2978..3928
                     /gene="dctP"
                     /locus_tag="VF308_14910"
     CDS             2978..3928
                     /gene="dctP"
                     /locus_tag="VF308_14910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein DctP"
                     /protein_id="HEX7437995.1"
                     /translation="MKTPLLLVALLAPALASAQETTLRMVSAFAENGIYVTHMQKWLQ
                     KFNAEGKGLLQINFIGGPKAIPTFEVGNAVKTGVVDMALATGAFYTNVMPEADFLKLT
                     QIPVAEQRKNGAFAAINELWMQKGNMVYLARMVENQPFHLYLNKKIDKPDLTGLKIRI
                     TPVYRDFFASLNANNVTTPPGEVYTALERNVVDGYGWPIGGIFDLNWHEKTKYRVDPG
                     FYDAEVSIVVNLDAYKKLAPKQKAYLDNQALALEAMNTFWKTYAADETTRQEKAGIQA
                     IKFDAAGTKAYLDKAYDSGWAGAMKANPDFAKKLKTLTAK"
     gene            3925..4464
                     /locus_tag="VF308_14915"
     CDS             3925..4464
                     /locus_tag="VF308_14915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HEX7437996.1"
                     /translation="MNASLERLEQCFGTLIDVLAVGASLLLLAMMLIICGDVLTRNVA
                     LPGLPSGIAWSNEVSELMLYGLTMLAAPWLLREGRHIRVDIVLRVLPPKWAYGCEWIS
                     DVLGMVCCLWMVWYGSAATARSAAGHALSIKTLVMPEWWFLAPLPVCFGLLAIEFMFR
                     MRRLAAAEAKPRDDAVSAA"
     gene            4461..5630
                     /locus_tag="VF308_14920"
     CDS             4461..5630
                     /locus_tag="VF308_14920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HEX7437997.1"
                     /translation="MSWGAAAWLLLGGSTVLLFIGLPVAFSFLVINLLGAYLWLGGEP
                     GLAQLARNSVNSVMSFSLTPIPLFVLMGEVLFHTGLAVKVIEGIERLITQVPGRLAVV
                     AVVAGTVFSAISGSTIATTAMLGSLSGISISKLLIGGVLPGLVLSVAFVAYIIVRVKL
                     NPSLAPNVELVRHRGFERFKPLVLYVLPLVSIFGVVVGAMAAGWGTPTESAAVGALAT
                     VVLALGYRALTPVILLRSLKGTVSISAMILFIIVGATRFAQILSFSGASNGLAQAITG
                     TGLPPWAVIAGMMLMLIFLGVFVDQVSMMMITLPIFMPVVQALNIDLIWFGVLFLICM
                     QLGLLLMTMKGVAPPQVTMLHIFRAVVPFVLMSLVLLIVVFLVPVVATWLPALIG"
     gene            complement(5647..>6624)
                     /locus_tag="VF308_14925"
     CDS             complement(5647..>6624)
                     /locus_tag="VF308_14925"
                     /inference="COORDINATES: protein motif:HMM:NF012588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase"
                     /protein_id="HEX7437998.1"
                     /translation="GPLCMRGEHAQGNFYVPLATTEGTLVASYNRGMRLLAECGGVKT
                     TVVEQFMQRSPAFMFDDALAARDFGHWVEAKFADIKRAAEATTQVGRLINIYQYAVGP
                     LRNLRFNYTTGDAAGQNMTGKATLAACEWIAAHHPGGARYLLSGNMDTDKKHSRINML
                     VTRGKRVVAEAVIRKEPLARLMGVDTAEAFEMRQVSNAGAFLAGSSNNGAHAANGLTA
                     LFIATGQDVANVAESHAGVVYNQLLPNGDYYWSITLTSLIVGTYGGGTGLATQRECLE
                     MLGCYGTGKADKFAEICAGVVLAGETSLASAVIHGDWVSSHDHYGRNRP"
BASE COUNT         1055 a         2208 c         2217 g         1144 t
ORIGIN      
        1 cctggtcgct gacgaggaag acggccgttc ccggcacgcg ttgcggcggg ctgaggaaga
       61 ccgattcgag gaagctggtc agatcgatgg cgtcgttgcg caggctctcc gacatgagct
      121 ttcggccctg cttccaagtc atcatcagcg tgaacatgat cgcgccgatg aggagcggaa
      181 accagccgcc gtcgacgacc ttgacgacgt tggcggcgaa gtacgtgaag tcgacgagga
      241 agaagaagcc ggtggcggcg aaggcgagcg gccacgggta cttccagccg tagcggatga
      301 cgaagaaggt catcgtcgtc gtgatcagca tgtcgatcgt cacggcgatg ccgtaggccg
      361 cggcaagccg gctgctcgag ccgaacagca cgacggcgag cacgatgcac ccatagaggc
      421 cccagttcac gaacggcagg tagatctgcc cggtctcccg caccgacgtg tgcaggatgc
      481 gcaggcgcgg caggtagccg agctgaatcg cctgcttggt gaccgaatag gccgcggtga
      541 tcagcgcctg cgacgcgatc accgtggcgc atgtcgccag gccgatcagc ggatagagcg
      601 cccaggtcgg cgccatctcg tagaacgggt tcttcacgcg ttccggatgg gcgagcagca
      661 tcgcaccctg gccgaaatag ttgatcacca gggccggcat cacgaggctg aaccaggcga
      721 ggcggatcgg gcgcttgccg aagtgcccca ggtcggcata gagggcctcg gccccggtca
      781 cgcacagcac caccgacccg agcgcgatga acgcgatgcc ggaatgggcg agcaggaaca
      841 cgagtgcgta gtgcgggctc agcgcccaga gcacggccgg attctcggcg acatgctcaa
      901 gccccatcac cgtgagcacc acgaaccaga cggcggtcac aggcccgaag agcttgccga
      961 cgcgggtcgt gccgtgacgc tgcaccatga agagcccggt cagcacgcac agcgtgatcg
     1021 gcacgatgta ggcatggagc cccggcgcgg cgacttccag gccctcgacc gcggagagca
     1081 ccgagatcgc cggcgtgatg accccatcgc cgaagaagat cgcggtaccg aagatgccga
     1141 cgaagagcag ccgctggcgc agcttcggac ggtccttcac cgcctgggag gcgagcgcga
     1201 gcatggcgat gaggccgcct tcgccgttgt tgtcggcgcg caggatcagc accacgtact
     1261 tgatcgacac gatcaccgtc agggtccaga agaccagcga caggacgccg tagatgttgg
     1321 ccgtcgtcaa cggcacccgg ccatcggcga acacttcctt cagggcatac agcgggctgg
     1381 tgccgatgtc gccgtagacc acgccaacgg cgcccagggt caacgcggca aggctggatg
     1441 cggaacggtt ctgcttcacg cggtcaccgc agccaggaag caggccgggt ctgggacgag
     1501 gtgcggccat tgtgcactcg caggccgtcg cgggcgcgac tgcacgatgc gcgggagttg
     1561 actacattcg ggtgcttcgg cgcaaccttg aggctttcga tgaagcgaac cgaactgacg
     1621 cgcatccaga gctgggccat cctctgcggc gcggccgcga tgctcagcct ggcgatgggc
     1681 atgcgccaga gcctgggcct gttccagccg cagatgatcc gcgacatcgg cgtcacggcc
     1741 gcgcagttct ccctcgcgat cgcgatccag aacatcgtct ggggcgtcac gcagcccttc
     1801 gtcggcatgc tggccgaccg ctggggcgcg cggccggtgg cggtcaccgg cgtgctgacc
     1861 tattccgccg gcctcggcgt ggccatcggt gcccattcgg cctgggtgct gacgctcggc
     1921 gtcggcatct gcatcggcct cgccttgtcg tgcacggcct ccaacatcgc gatgaacgtc
     1981 accgcgcgca cggtggcgcc ggcgcggcgc agcgtcgcga tgggcgcggt ctcgtcggtc
     2041 ggctcgatcg ggctgatgct ggccgcgccg ctcgcccaat cgctgctgac gtcgaacggc
     2101 tggcaggtcg ccctcgtcgc gtttctgggc ctggcggccg tgatgctgcc ggcggcctgg
     2161 atagccgggt cggccgacaa gatcgcgatc gacgcggccg gcacggcgca gtcggtcggc
     2221 caggccgtgc gcgaggcggc cggccacacc ggctatgtcg tgatggcggt ggccttcttc
     2281 gtctgcgggc tgcagctggt cttcctcacc acgcatctgc cgacctacct cgaaatctgc
     2341 ggcatggacc cggggctcgg cgcgaaggcg ctggcgacga tcggcctgtt caacgtcggc
     2401 ggctcgtacc tcttcggctg gctcggcggg cgctactcca aacggggcct cctcggcggc
     2461 atctacgtgc tgcgctcgct cttcatggtc ggctacttca tcgtccggcc ctcgccggcc
     2521 tcgacgctcg tcttcgccgc ggcgatgggc acgctctggc tcggcgtggt gccgctggtg
     2581 agcggcctcg tcgtccatct gttcggcctg cgctacatgg ccacgctttc gggcatcgcg
     2641 ttcttcagcc accagctcgg ctcgttcgtc ggcgcctatg gcggcggcct gatctacagc
     2701 gcgatgggct cctacgaatg ggcgtggaag ggcgcggtcg cgatcggcat cgccgcgggg
     2761 ctgttccaga tgaccatgaa cgtgcgacct tcggcgcgga tcctcgccga gcgttccggc
     2821 gcgtcggggc cgaggccggc gacggcctga gcccgcaggc aagcacccgc tccagacaaa
     2881 cccgctgccg gagcgcgccg tcggcgtgca cagttcgctt tcgcgccgca tccgctggcg
     2941 caccatcgca ccgcgcacca tgaatccgat ccgatcgatg aagaccccgt tgctgctcgt
     3001 cgcgttgctc gcaccggcgc tcgcgtcggc gcaggaaacg acgctgcgca tggtcagcgc
     3061 ctttgccgag aacggcatct acgtgacgca catgcagaaa tggctgcaga aattcaacgc
     3121 cgaaggcaag ggcctgctgc agatcaattt catcggcggg ccgaaggcga ttccgacctt
     3181 cgaggtcggc aacgccgtca agaccggggt cgtcgacatg gcgctcgcga ccggcgcgtt
     3241 ctacaccaac gtgatgcccg aggccgactt cctgaagctg acccagatcc ccgtcgcgga
     3301 gcagcgcaag aacggcgcgt tcgcggcgat caacgagctc tggatgcaga agggcaacat
     3361 ggtgtacctg gcgcggatgg tcgagaacca gccgttccac ctctacctca acaagaagat
     3421 cgacaagccc gacctgaccg gcctgaagat ccgcatcacg ccggtctacc gcgacttctt
     3481 cgcctcgctc aacgccaaca acgtgacgac gccgccgggc gaggtctaca ccgcgctcga
     3541 acgcaacgtg gtcgacggct acggctggcc gatcggcggc atcttcgacc tgaactggca
     3601 cgagaagacg aagtaccgcg tcgaccccgg cttctacgac gccgaggttt cgatcgtggt
     3661 gaacctcgac gcctacaaga agctcgcacc gaagcagaag gcctacctcg acaaccaggc
     3721 cctcgcgctc gaggccatga acaccttctg gaaaacctac gccgccgacg agaccacgcg
     3781 ccaggaaaag gccggcatcc aggcgatcaa gttcgacgcg gccgggacca aggcgtacct
     3841 tgacaaggcc tacgacagcg gctgggccgg cgcgatgaaa gccaatcccg acttcgccaa
     3901 gaagctcaag acgctgacgg cgaagtgaac gccagcctgg agcggctcga acaatgcttc
     3961 gggacgctga tcgacgtgct cgcggtcggc gccagcctgc tgctgctggc gatgatgctg
     4021 atcatctgcg gcgatgtgct gacgcgcaac gtcgcactgc ccggcctgcc gagcggcatc
     4081 gcctggagca acgaggtctc cgagctgatg ctctacggcc tgacgatgct cgcggcgccc
     4141 tggctgctgc gcgaaggccg ccacatccgc gtcgacatcg tgttgcgcgt gctgccgccg
     4201 aagtgggcct acggctgcga atggatctcc gacgtactgg ggatggtgtg ttgcctgtgg
     4261 atggtctggt acggcagtgc ggctaccgcg cgaagcgcgg ccggccatgc gctgtcgatc
     4321 aagaccctgg tgatgcccga atggtggttc ctcgcgccgc tgccggtgtg cttcggattg
     4381 ctcgcgatcg agttcatgtt ccgcatgcgc cgcctcgccg ccgcggaggc gaagccgcgt
     4441 gacgacgcgg tgagtgcggc atgagctggg gcgcggcggc gtggctgctg ctcggtggct
     4501 cgaccgtgct gctcttcatc ggcctgccgg tcgcgttctc gtttctggtg atcaacctgc
     4561 tcggtgccta tctgtggctc ggcggcgaac ccgggctcgc gcaactcgcg cgcaacagcg
     4621 tcaactcggt gatgagcttt tcgctgacgc cgattccact cttcgtgctg atgggcgagg
     4681 tgctgttcca caccggcctc gcggtcaagg tgatcgaggg catcgaacgg ctgatcaccc
     4741 aggtgcccgg gcgcctcgcg gtcgtggcgg tggtcgccgg gacggtgttc tcggcgatct
     4801 cgggctcgac catcgcgacg accgcgatgc tcggttcgct ctcgggcatc tcgatctcca
     4861 agctgctgat cggcggcgtg ctgccggggc tcgtgctgtc ggtcgcgttc gtcgcctaca
     4921 tcatcgtgcg cgtgaagctg aatccttcgc tcgcaccgaa cgtcgagctg gtccgccacc
     4981 gcggcttcga acgcttcaag ccgctggtgc tctatgtgct gccgctggtc tcgatcttcg
     5041 gcgtggtggt cggcgcgatg gccgcaggct ggggcacgcc gaccgagtcg gccgcggtcg
     5101 gcgcgctcgc gaccgtcgtg ctggcgctcg gctaccgggc cctcacgccg gtgatcctgc
     5161 tcaggtcgct gaaaggcacg gtctcgatct cggcgatgat cctcttcatc atcgtcggcg
     5221 cgaccaggtt cgcgcagatc ctctcgttct cgggcgcctc caacgggctc gcgcaggcga
     5281 tcaccggcac cggcttgccg ccctgggcgg tgatcgccgg gatgatgctg atgctgatct
     5341 ttctcggcgt cttcgtcgac caggtcagca tgatgatgat caccttgccg atcttcatgc
     5401 cggtggttca ggcgctcaac atcgacctga tctggttcgg cgtgctgttt ctgatctgca
     5461 tgcaactcgg cctgctgctg atgacgatga aaggcgtggc gccgccgcag gtcacgatgc
     5521 tgcacatctt ccgcgccgtc gtgccgttcg tgctgatgag cctggtgctg ctcatcgtcg
     5581 tcttcctggt cccggtcgtg gcgacatggc tgccggcgct gatcggctga ggcgtcggcg
     5641 cgcccctcat ggccggtttc ggccgtagtg gtcgtggctg gatacccagt cgccgtggat
     5701 caccgcgctg gccagcgagg tttcccccgc caacaccaca ccggcacaga tctcggcgaa
     5761 cttgtcggcc ttgccggtgc cgtagcagcc cagcatctcc aggcactcgc gctgcgtggc
     5821 caggccggtc ccgccgccat aggtacccac gatcagcgag gtgagggtga tcgaccagta
     5881 gtagtcgccg ttgggaagca gttggttgta gaccaccccg gcatgcgact cggccacgtt
     5941 ggccacgtcc tgacccgtgg cgatgaacag ggccgtcaac ccgttggcgg cgtgcgcgcc
     6001 gttgttggac gatcccgcca gaaacgcccc cgcgttggac acttgccgca tctcgaaagc
     6061 ctcggccgtg tccacgccca tgaggcgcgc cagcggctcc ttgcggatca cggcttcggc
     6121 caccacgcgc ttgccgcgcg tcaccagcat gttgatgcgc gagtgcttct tgtcggtgtc
     6181 catgttgccc gacagcaggt atctggcgcc gccgggatgg tgcgcggcaa tccactcgca
     6241 ggccgccagc gtggccttgc cggtcatgtt ctggccggcg gcgtcgcccg tcgtgtagtt
     6301 gaagcgcaag ttgcgcagcg gccccaccgc gtactggtag atgttgatca gcctgcccac
     6361 ctgcgtggtg gcttcggccg cgcgcttgat gtccgcaaat ttggcttcca cccaatgacc
     6421 gaaatcgcgc gccgccaagg cgtcgtcgaa catgaaggcc ggcgagcgct gcatgaactg
     6481 ctccaccacg gtggtcttga cgccaccgca ttcggcgagc agccgcatgc cccggttgta
     6541 gctggccacc agcgtgccct cggtcgtggc caggggcacg tagaagttgc cctgtgcatg
     6601 ctcgccgcgc atgcacagcg gtcc
//
LOCUS       DASVHM010000815         1700 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1212873, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000815 DASVHM010000000
VERSION     DASVHM010000815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1212873"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1700
                     /locus_tag="VF308_14930"
     CDS             <1..>1700
                     /locus_tag="VF308_14930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019655002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7437999.1"
                     /translation="PMVVAWRNGAAVRLQDIAQVLDGVEDTRTLGLFNGEKAIIILVT
                     RQPSANIIQTVDSVRAMLPELQAELPADVTLQVASDSTNSIRASLREVELTLVISVIL
                     VVLVVSLFLRSVRATIVPAVATVVALLGTFGVMYLLGFSLNNLSLMALTVATGFVVDD
                     AIVVLENTSRHIEAGMTRMRAALLGAREVGFTVLSISVSLVAVFIPLLFMAGQPGRLF
                     REFAVTLSAAVLISLVISLTTTPMMCAWMLKPGGAHERPPRRIARAAERGYQWVLRRY
                     EASLDWALASKALVMLVLLAVIGLNVYLFSVVPKGYFPQQDSGQLNGGLRADQSISTK
                     AMGEKLRQVVGIVHRDPAVATVVGFTGGARAGGGFMFVNLKPASQRSESGNAVIARLR
                     PQLAQVTGLQVFLNPVQDVRSGGRQSSSTYQYTLKSDNLVDLRAWATKLADAMKQQAA
                     LADVDTDQQENGVQTMVKVDADSARRLGLTATSIDAALYDAFGQRQVATIYTELNQYH
                     VVMEWAPGYTQSPNALADVYVPATRSVNNGGQVVATESTATSGTTGAANGGSSSTAST
                     "
BASE COUNT          268 a          590 c          575 g          267 t
ORIGIN      
        1 cgccgatggt cgttgcctgg cgcaacggcg ccgcggtccg cctgcaggac atcgcgcagg
       61 tgctcgacgg cgtcgaggac acgcgcacgc tcggcctctt caacggcgag aaggcgatca
      121 tcatcctggt gacgcggcag ccctcggcca acatcatcca gacggtcgat tccgtgcgcg
      181 cgatgctgcc cgagcttcag gccgagctgc ccgccgacgt gaccctgcag gtcgcctccg
      241 acagcacgaa ttcgatccgc gcgtcgctgc gcgaggtcga gctgacgctg gtgatctcgg
      301 tgatcctcgt cgtgctcgtc gtcagcctgt tcctgcgcag cgtgcgcgcg accatcgtgc
      361 cggcggtggc gacggtcgtc gcgctgctcg gtaccttcgg cgtgatgtac ttgctgggct
      421 tcagcctcaa caacctgagc ctgatggcgc tgaccgtcgc gaccggcttc gtggtcgacg
      481 acgcgatcgt cgtgctcgag aacacgagcc gccacatcga ggccggcatg acgcgcatgc
      541 gcgccgcgct gctcggcgcg cgcgaagtcg gcttcacggt gctgtcgatc agcgtctcgc
      601 tggtcgcggt cttcattccg cttctcttca tggccggtca gccggggcgg ctcttccgtg
      661 aattcgcggt gaccttgtcg gccgcggtgc tgatctcgct ggtgatttcg ctgacgacga
      721 cgccgatgat gtgcgcctgg atgctcaaac ccggcggcgc gcacgagcgg ccgccgcgcc
      781 gcatcgcccg tgccgccgaa cgcggctacc aatgggtgct caggcgctac gaggcgagcc
      841 tcgactgggc gctcgccagc aaggcgctcg tgatgctggt cctgctcgcg gtgatcggct
      901 tgaacgtcta ccttttcagc gtcgtgccga agggctactt tccgcagcag gacagcggcc
      961 agctcaacgg cggcctgcgt gccgaccaga gcatctcgac caaggcgatg ggcgagaagc
     1021 tgcgccaggt cgtcggcatc gtgcatcgcg atccggcagt ggccaccgtg gtcggcttca
     1081 ccgggggcgc ccgcgccggc ggcgggttca tgttcgtcaa cctgaagccc gccagccagc
     1141 gcagcgaaag cggcaacgcg gtgatcgcac gcctgcggcc gcaactggcg caggtcacgg
     1201 gcctgcaggt gttcctgaac ccggtgcagg acgtgcgctc cggcggccgg cagagcagct
     1261 cgacctacca gtacacgctc aagagcgaca acctcgtcga cctgcgcgcc tgggcgacaa
     1321 agcttgccga cgcgatgaag cagcaggccg cgctcgccga tgtcgacacc gaccagcagg
     1381 agaacggcgt ccagacgatg gtgaaggtcg acgccgacag cgcccggcgc ctggggctga
     1441 ccgcgacctc gatcgatgcc gcgctctacg atgccttcgg ccagcgccag gtcgcgacga
     1501 tctataccga actgaaccag taccacgtgg tgatggagtg ggcgccgggc tacacgcaga
     1561 gcccgaacgc gctcgccgac gtctacgtgc cggcgacacg cagcgtgaac aacggcggac
     1621 aggtcgtcgc gaccgaaagc acggcgacga gcggcacgac cggcgccgca aacggcggct
     1681 cctcgtccac cgcgtcgacc
//
LOCUS       DASVHM010000816         1529 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1000543, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000816 DASVHM010000000
VERSION     DASVHM010000816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1000543"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1068)
                     /gene="mpl"
                     /locus_tag="VF308_14935"
     CDS             complement(<1..1068)
                     /gene="mpl"
                     /locus_tag="VF308_14935"
                     /EC_number="6.3.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HEX7438000.1"
                     /translation="MHLHVLGICGTFMGGLAALAREAGHRVTGCDRDVYPPMSEQLAA
                     LDIDLIEGWGAEQLELAPDLFVVGNSITRGNPLMEAILDAGLPYTSGPQWLAEHVLAG
                     RHVLAVAGTHGKTGTTAMLAWILESAGKKAGFLVGGVPLDFGVSARLGERTAPFVIEA
                     DEYDTAFFDKRSKFIHYRPRTAILNNLEFDHADIFDNLAAIERQFHHLVRTVPASGRL
                     VVNARDEALQRVLAMGCWSEVQRFGGRKEEPGMLRARGEPHAFDVLRGGLRIARVDWQ
                     LLGEHNQMNALAAIGAAEHAGVAPEVSARALGTFHNVRRRLELRGEAMGVSVYDDFAH
                     HPTAMRTTLDGLRRKVGAARIL"
     gene            1215..>1529
                     /locus_tag="VF308_14940"
     CDS             1215..>1529
                     /locus_tag="VF308_14940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011298512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEX7438001.1"
                     /translation="MRFNRHVLLVATAALLFAANASAGSVLDDIRSRGKIVIAHRESS
                     VPFSFVDASGKPVGYAIDLCKRIAEAVRVRLGLRALGVEYLKVTPADRITVITERRAD
                     LEC"
BASE COUNT          222 a          527 c          531 g          249 t
ORIGIN      
        1 gaggatgcgc gccgcgccga ccttgcggcg cagcccgtcg agcgtcgtcc gcatcgccgt
       61 cggatggtgc gcgaagtcgt cgtagacgct cacgcccatc gcctcgccac gcaactcgag
      121 gcggcgccgc acgttgtgaa aggtcccgag cgcccgcgcc gagacctcgg gcgcgacgcc
      181 cgcgtgctcg gccgcgccga tcgcggcgag cgcgttcatc tggttgtgct cgccgagcag
      241 ttgccagtcg acgcgggcga tcctgaggcc cccgcgcagc acgtcgaagg catgcggctc
      301 gccgcgcgcg cgcagcatgc cgggctcttc cttcctgccg ccgaagcgct gcacttcgct
      361 ccagcagccc atcgccagca cgcgctgcag cgcttcgtcg cgtgcgttga cgacgagccg
      421 tccgctcgcc ggtacggtgc gaaccagatg atggaactgg cgctcgatcg cggcgaggtt
      481 gtcgaagatg tcggcgtggt cgaactcgag gttgttcagg atcgccgtgc gcggccggta
      541 gtggatgaac ttgctgcgct tgtcgaagaa cgccgtgtcg tactcgtcgg cttcgatcac
      601 gaacggcgcg gttcgctcgc ccagccgcgc ggagacgccg aaatcgagcg gcacgccgcc
      661 gaccagaaag ccggccttct tgcccgccga ttcgaggatc caggccagca tcgccgtggt
      721 tccggtcttg ccatgagtgc cggcaacggc gagcacgtgg cggccggcga gcacgtgctc
      781 ggcgagccac tgcgggccgc tcgtgtaggg caggccggcg tcgaggatcg cttccatcag
      841 cgggttgccg cgcgtgatcg agttgccgac gacgaagaga tcgggcgcga gctcgagctg
      901 ctccgcgccc cagccctcga tcaggtcgat gtcgagcgcg gcgagttgct cgctcatcgg
      961 cggatagacg tcccggtcgc agccggtcac gcggtgcccg gcctcgcggg caagcgcagc
     1021 gagcccgccc atgaacgtgc cgcagatgcc gagaacatgc aggtgcatcg gcgcattgtg
     1081 caagagccgc cggcgcatgt tcgtgcggaa ttccgcttgt tctgcggcag ggtccgcgca
     1141 gcgtgcagtc tgcccgcccg agcgcgccgg agcgcagaga taatcgcgcc ctttgtgggc
     1201 gaagaaggag tccggtgcgc ttcaaccgtc atgttctgct cgtcgccacc gcggcccttc
     1261 ttttcgcagc gaacgcgtcg gccgggtcgg tgctcgacga catccgcagc cgcggcaaga
     1321 tcgtcatcgc gcatcgcgaa tcctcggttc cgttttcgtt cgtcgacgcc tcgggcaagc
     1381 cggtcggcta tgcgatcgac ctgtgcaagc ggatcgccga ggccgtgcgc gtgcggctcg
     1441 gcctcagggc gctcggcgtc gaatacctca aggtgacgcc ggccgaccgg atcaccgtga
     1501 tcaccgagcg ccgtgccgat ctcgaatgc
//
LOCUS       DASVHM010000817         4144 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_783768, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000817 DASVHM010000000
VERSION     DASVHM010000817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4144
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_783768"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1059)
                     /locus_tag="VF308_14945"
     CDS             complement(<1..1059)
                     /locus_tag="VF308_14945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEX7438002.1"
                     /translation="MSTTRISFSLFDPVLVRPAIVESFAKLDPRVQWRNPVMFVVYVG
                     SILTTILGIQALTGKGEAPAAFIIAVSVWLWFTVLFANFAEALAEGRSKAQTASLRGM
                     KKKVVAKVLSAPKHGASWHPQEAEELKKGVVVLVEAGDVVPLDGEVIEGVASVDESAI
                     TGESAPVIREAGGDFASVTGGTRVLSDWLVVRVGVNPGESFLDRMIAMVEGAHRQKTP
                     NEIALNILLVALTIVFLVVVVTLLPMSIFSVDVAKAGTAVTVTTLVALLVCLIPTTIG
                     ALLSAIGVAGMSRMMQANVIATSGRAVEAAGDVDVLLMDKTGTITLGNRQATDLLPVG
                     DVLIDDLADAAQLSSLADE"
     gene            complement(1065..2876)
                     /gene="kdpA"
                     /locus_tag="VF308_14950"
     CDS             complement(1065..2876)
                     /gene="kdpA"
                     /locus_tag="VF308_14950"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011871114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HEX7438003.1"
                     /translation="MPTTQVIVQLVVFLAILLVLAWPLGMWLTAVAEGRLPRWLAPVA
                     WLERGFYRAAGVDAGESTSWKRYAVAAVAFNVLGVFAVYGLQRLQGFLPFNPQAMAAV
                     SADSSFNTAVSFVTNTNWQGYGGESTMSYLTQMLALTVQNFFSAATGIAVVWALIRGF
                     AARSAGTVGNFWVDVTRSTLYVLLPIAIVYALFLVGQGTIQNLDAYKDVTTLEVNAYQ
                     QPKNGPDGQPLKDAKGAPVMEDVKAATQSIAMGPIASQEAIKMLGTNGGGPFNANSAH
                     PYENPTPLSNFVQMLSIFLIPTALVFCLGRMVGDMRQGWAVLAAMTLIFVVMVFVAAP
                     LEQGGNPAIASLGVDQTASVLQPGGNMEGKEARFGIAASTLFAAVTTGASCGAVNAMH
                     DSFMPLGGAVPLVLMQLGEVVFGGVGSGLYGMLVFAVLTVFIAGLMIGRTPEYLGKKI
                     ESFDMKMVSIAILATPILVLVGTAIAVGAEAGRAGIANPAAHGFTEILYAFSSAANNN
                     GSAFAGLSANTPFYNTVLAVAMWFGRFAVIVPVLALAGSLAAKKRLPVTPGTLPTHGP
                     LFVVLLIGSVILVGLLNYVPALALGPIAEHFSLFSAK"
     gene            complement(2876..2965)
                     /gene="kdpF"
                     /locus_tag="VF308_14955"
     CDS             complement(2876..2965)
                     /gene="kdpF"
                     /locus_tag="VF308_14955"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018310805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HEX7438004.1"
                     /translation="MSGLYFICGVVALALFVYLLVALFNAENL"
     gene            complement(3167..3478)
                     /locus_tag="VF308_14960"
     CDS             complement(3167..3478)
                     /locus_tag="VF308_14960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438005.1"
                     /translation="MRDAARSPESDTSMPILQIAVNIVFGTPFLWCLFVAVRGNVGWG
                     YRLLEGGSTGIAALIWPMAAALGALWLGVSLMLHPNRDRRPAGALFVLAGSALLVLLG
                     S"
     gene            complement(3522..>4144)
                     /locus_tag="VF308_14965"
     CDS             complement(3522..>4144)
                     /locus_tag="VF308_14965"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEX7438006.1"
                     /translation="RSARFFSGIVLLGSDASVNDAAPWIERELRLTGDAISCDIPVLG
                     HCFGGQLMARALGATVQRNAFANIGWSSLRATPAGRRIFGNATQVHAFNWHYESFAIP
                     RGATRTLFGEHCLNKGFVFGKHLAFQGHFEVTEDIVRAWSDANSAELGKAQGPAVQHR
                     AEVLMCLPERVAAVHVAARSAYAAWLAPIRGSCESPAARQQGGTHG"
BASE COUNT          736 a         1342 c         1462 g          604 t
ORIGIN      
        1 ttcgtcggcc agcgacgaga gctgggcggc gtccgcgagg tcgtcgatca acacgtcgcc
       61 gaccggaagt aggtccgtgg cctggcggtt gccgagcgtg atcgtcccgg tcttgtccat
      121 caggagcacg tcgacgtcgc cggcggcctc gacggcgcga ccggaagtag cgatgacatt
      181 ggcctgcatc atccggctca tgccggcgac gccgatcgcc gagagcaggg cgccgatcgt
      241 cgtcgggatc aggcagacga gcagcgcgac gagcgtcgtc accgtcaccg ccgtgccggc
      301 cttggcgacg tcgacgctga agatcgacat cggcagcagc gtgacgacga cgaccaggaa
      361 gacgatcgtc agcgccacga gcaggatgtt caacgcgatc tcgttcggcg tcttctgccg
      421 gtgcgcgcct tcgaccatcg cgatcatccg gtcgaggaac gattcgccag ggttgacgcc
      481 gacgcggacc acgagccagt cggagagcac gcgcgtgccg ccggtgaccg aggcgaaatc
      541 gccgccggct tcgcggatga cgggcgcgga ctcgccggtg atcgcgcttt cgtcgaccga
      601 ggcgacgcct tcgatgacct cgccgtcgag cgggacgacg tcgccggcct cgaccagcac
      661 gaccacaccc ttcttcagct cctcggcttc ctgcggatgc cacgacgcgc catgtttcgg
      721 cgcgctcagc accttggcga cgaccttctt tttcatgccg cgcaggctgg cggtctgcgc
      781 cttgctgcgg ccttcggcga gcgcctcggc gaagttggcg aagaggacgg tgaaccagag
      841 ccagacggac accgcgatga tgaatgccgc cggggcctcg cccttccccg tcagggcctg
      901 gatccccaag atcgtggtga ggatgctgcc gacgtagacg acgaacatca ccgggttgcg
      961 ccactggacg cgcgggtcga gcttggcgaa cgactcgacg atggccggcc ggacgagcac
     1021 cgggtcgaag agcgagaacg agatgcgggt ggtggacatg gcgctcactt ggcggaaaag
     1081 agcgagaagt gctcggcgat cgggccgagc gcgagcgccg gcacgtagtt cagcaggccg
     1141 acgaggatca cgctgccgat caagagaacg acgaagagcg ggccgtgcgt cggcaaggtc
     1201 ccgggcgtca cgggcaaccg cttcttggcc gcgagcgagc cggcaagcgc caggacggga
     1261 acgatgacgg cgaagcgtcc gaaccacatc gccaccgcca gcaccgtgtt gtagaacggc
     1321 gtgttcgccg agaggccggc gaaggcgctg ccgttgttgt tggccgccga gctgaaggcg
     1381 tagaggattt ccgtgaagcc gtgcgcggcg ggattggcga tgccggcccg gccggcctcg
     1441 gcgccaaccg cgatcgccgt tcccaccagg acgaggatcg gcgtcgccag gatcgcgatc
     1501 gacaccatct tcatgtcgaa gctctcgatc ttcttgccca ggtattccgg cgtgcggccg
     1561 atcatcaggc cggcgatgaa gacggtgagg acggcgaaga cgagcatgcc gtacaggccc
     1621 gagccgacgc cgccgaagac gacctcgccg agctgcatca gcaccagcgg cacggcgccg
     1681 ccgagcggca tgaacgagtc gtgcatcgcg ttgaccgcac cgcacgacgc gccggtggtg
     1741 acggcggcga acagcgtcga cgcggcgatg ccgaagcgcg cttccttgcc ttccatgttg
     1801 ccgccgggtt ggagcacgct cgccgtctgg tcgacgccga gcgacgcgat ggccgggttg
     1861 cccccctgct ccagcggcgc cgccacgaag accatgacga cgaagatcag ggtcatcgcg
     1921 gcgagcacgg cccagccctg ccgcatgtcg ccgaccatcc ggccgaggca gaacaccagg
     1981 gccgtcggga tcaggaagat cgacagcatc tggacgaagt tcgagagcgg cgtcgggttc
     2041 tcgtacgggt gcgccgagtt ggcgttgaac gggccgccgc cgttcgtgcc gagcatcttg
     2101 atcgcctcct gcgaagcgat cgggcccatg gcgatcgact gcgtcgcggc cttgacgtcc
     2161 tccatcacag gggcgccctt ggcgtccttc agcggctggc cgtcggggcc gttcttcggc
     2221 tgctgatagg cattgacctc gagcgtggtc acgtccttgt aggcgtcgag gttctggatc
     2281 gtcccctggc cgacgaggaa gagggcgtag acgatcgcga tcggaagcag gacgtagagc
     2341 gtcgatcgcg tcacgtcgac ccagaagttg ccgaccgttc cggccgagcg cgccgcgaag
     2401 ccgcggatca gcgcccagac gacggcgatg ccggtcgcgg cggagaagaa gttctgcacc
     2461 gtgagcgcca gcatctgcgt caggtagctc atcgtcgact cgccgccgta gccctgccag
     2521 ttggtgttgg tcacgaagct gaccgcggtg ttgaacgacg agtcggcgct gaccgccgcc
     2581 atcgcctggg gattgaacgg caggaagccc tgcaggcgct gcaggccgta gacggcgaag
     2641 acgccgagca cgttgaacgc cactgccgcg acggcatagc gcttccagga cgtgctctcg
     2701 ccggcgtcga cgcccgccgc gcgatagaac cctcgctcga gccaggcgac aggcgccagc
     2761 cagcgcggca ggcgaccctc ggcgaccgcg gtcagccaca tgccgagcgg ccaggcgagc
     2821 accagcagga tcgccaggaa gacgaccagc tggacgatga cttgggtcgt gggcatcaca
     2881 ggttctccgc gttgaagagc gcgacgagca ggtagacgaa gagcgcgagg gcgacgacgc
     2941 cgcagatgaa gtacaggccg ctcacttctg cgctcccaac gccgcgcagg ccgcggtgag
     3001 accgaagatc agcgcgccga aggtcacgat caggaggaga taccagaggt cttgcatgat
     3061 ggtcacgagg ttgaagggtc ggagagtagg ggcgtccgca taaagatggt gtctagattg
     3121 cgctcgaagg ttgatgcgga tcaatcggcc gcagggcgcg tcggcgtcac gagccgagca
     3181 acacgagcag cgcgctcccc gccaggacga acaaggcgcc cgcaggcctg cggtcccgat
     3241 tggggtgcag catgaggctc accccgagcc agagcgctcc gagggcggcg gccatcggcc
     3301 agataagggc ggcgatgccg gtgcttccgc cttccaggag gcggtagccc cagccgacgt
     3361 ttccccgaac cgccacgaac agacaccaga ggaacggcgt gccgaaaacg atgttgacgg
     3421 cgatctgcag gatcggcatc gacgtgtcgg actccggcga ccgggcggcg tcgcgcatgg
     3481 cgccgccgac ggggtccgac gaggtcaggt catgagtgca tctagccatg ggtccctccc
     3541 tgctgccgcg cggcgggcga ttcgcagctt ccgcggatcg gtgccagcca ggcggcatac
     3601 gccgatcgcg cggccacgtg cacggcggcc actcgctccg gcaggcacat gaggacctcg
     3661 gcccggtgct ggacagccgg tccctgtgcc ttccccagct cggcgctgtt cgcatcggac
     3721 catgcgcgaa cgatgtcttc ggtgacctcg aagtgccctt ggaacgcaag gtgcttgccg
     3781 aaaacgaacc ccttgttcag gcagtgctcg ccaaagagcg tgcgggtcgc accccgagga
     3841 atggcgaagc tctcgtagtg ccagttgaac gcatgcacct gggtggcgtt gccgaagatg
     3901 cgtcggccgg cgggggtggc gcgcaggctg ctccagccga tgttggcgaa ggcattcctt
     3961 tgcacggtgg cgccgagcgc tcgagccatg agttggccgc cgaagcagtg accgaggacg
     4021 gggatgtcgc aggagatcgc atctccggtg agtcgcagct cgcgctcgat ccacggagcg
     4081 gcgtcgttga cgctggcatc cgagcccagg aggacgattc cgctgaagaa gcgcgccgac
     4141 ctcg
//
LOCUS       DASVHM010000818         1893 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_347268, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000818 DASVHM010000000
VERSION     DASVHM010000818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347268"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..477)
                     /gene="purN"
                     /locus_tag="VF308_14970"
     CDS             complement(<1..477)
                     /gene="purN"
                     /locus_tag="VF308_14970"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014429617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEX7438007.1"
                     /translation="MKNIVILISGRGSNMEAIERACADEGWNARVCAVISNRADAAGL
                     AYAQARGIATASLDHRLFPAREAFDAELAVLVDSFAPDVVALAGFMRILTPAFVARYE
                     GRIVNVHPSLLPMFPGLHTHRRALAAGCKLAGATIHFVTPALDHGPIIAQAVVPVLP"
     gene            550..1779
                     /locus_tag="VF308_14975"
     CDS             550..1779
                     /locus_tag="VF308_14975"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009521145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEX7438008.1"
                     /translation="MNQPDAPSSKTPRQRVLSGMRPTGELHLGHYHGALKNWVRLQDE
                     YDCFYFVADWHALTTHYEDREVIEKNVYDMVIDWLAAGLDPERATIFIQSRLPEHAEL
                     FTLLAMGTPLGWLERIPTYKDQIEKLTDRDLATYGFLGYPLLQAADILIYRAAFVPVG
                     EDQASHVEITREVARRFNHLYGREPNFEALALATVKKMGKSDAMTFEAAKKAFQQDGS
                     AEAHAAALELIARSGALSAADRERLTGFIRGAGRSVLTEPQALHTEVKKLPGLDGAKM
                     SKSYGNAIAMRDEPAVVEQKVRRMQTDPKRVRRTDPGNPEDCPVWQFHLVYSDAATRD
                     WVVKGCTTAGIGCLECKQPVIDAILREQQPWRERAAPYLANPKQVHWIVEVGTERART
                     IARETMRDVRSAMGLSY"
BASE COUNT          337 a          663 c          636 g          257 t
ORIGIN      
        1 gggcagcacc ggcaccaccg cctgcgcgat gatcggcccg tggtcgaggg ccggcgtgac
       61 gaaatggatc gtcgcgccgg ccagcttgca gccggcggcg agcgcgcgcc ggtgcgtgtg
      121 caagccggga aacatcggca gcagcgacgg atggacattg acgatccggc cctcgtagcg
      181 agcgacgaac gccggcgtca ggatgcgcat gaagccggcc agcgccacga cgtcgggcgc
      241 gaacgagtcg acgagcacgg cgagttcggc gtcgaacgcc tcgcgcgcgg ggaagagccg
      301 atggtcgagg ctcgccgttg caatgccgcg cgcctgcgca taggccaggc ccgccgcgtc
      361 ggcgcggttg ctgatgaccg cgcagacgcg ggcgttccag ccctcgtcgg cgcaggcccg
      421 ctcgatcgcc tccatgttgg agccgcggcc cgaaatcagg atcacgatgt tcttcatgcc
      481 gggcgcagtg tatcggcctc gcctggggcc acacctacaa tcgccgggct cacaagagcc
      541 cgacacggca tgaatcaacc cgacgctccc tcttcgaaga ccccgcgcca gcgcgtgctc
      601 tccggcatgc gcccgaccgg cgagttgcac ctcggccact accacggcgc gctgaagaac
      661 tgggtccgcc tgcaagacga gtacgactgt ttctatttcg tcgccgactg gcacgccctg
      721 accacgcatt acgaagaccg cgaggtcatc gagaagaacg tctacgacat ggtgatcgac
      781 tggctcgccg ccggcctcga cccggaacgc gcgacgatct tcatccagag ccgcctgccc
      841 gagcacgccg aactgttcac gctgctcgcg atgggcacgc cgctcggctg gctcgagcgc
      901 ataccgacct acaaggacca gatcgagaag ctgacggacc gcgacctcgc cacctacggc
      961 ttcctcggct atccgctgct gcaggccgcc gacatcctga tctaccgcgc ggccttcgtg
     1021 ccggtcggcg aggaccaggc atcgcacgtc gagatcacgc gcgaagtcgc gcgccgcttc
     1081 aaccacctct acggccgcga gccgaatttc gaggcgctgg cgctggcgac cgtgaagaaa
     1141 atgggcaaga gcgacgccat gaccttcgag gcggcgaaga aggccttcca gcaggatggc
     1201 agcgccgagg cccatgccgc cgcgctcgaa ctgatcgcgc gcagcggtgc gctctcggcg
     1261 gccgaccgcg agcgcctgac cggcttcatc cgcggcgccg gccgttcggt gctgaccgaa
     1321 ccgcaggcgc tgcacaccga agtcaagaag ctccccggcc tcgacggcgc gaagatgagc
     1381 aagagctacg gcaatgcgat cgcgatgcgc gacgagccgg cggtggtcga gcagaaagtc
     1441 cggcgcatgc agaccgaccc gaaacgggtg cggcgcaccg accccggcaa tccggaggac
     1501 tgcccggtgt ggcagttcca cctcgtctac agcgacgcgg ccacgcgcga ctgggtcgtg
     1561 aagggctgca ccacagccgg catcggctgc ctcgaatgca agcagccggt gatcgacgcg
     1621 atcctgcgcg agcaacaacc ctggcgcgaa cgtgccgccc cgtacctcgc gaacccgaag
     1681 caggtgcact ggatcgtcga ggtcggcacc gagcgcgccc gcaccattgc gcgcgagacg
     1741 atgcgcgacg tgcgttcggc gatggggctg agctactagg gcctggctgc cgctcgatta
     1801 caggcggccg gcgcagcctg gagcgccgca gcgacaggcg aggcgtacct cgtggtggga
     1861 ttcgccgtag tcgaccgtga tctcttcgcc tgt
//
LOCUS       DASVHM010000819         5317 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_710512, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000819 DASVHM010000000
VERSION     DASVHM010000819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5317
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_710512"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1386
                     /locus_tag="VF308_14980"
     CDS             <1..1386
                     /locus_tag="VF308_14980"
                     /inference="COORDINATES: protein motif:HMM:NF016750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438009.1"
                     /translation="FYIPYFCWHPQLSVPGNCRICAVEVTNEGQAAGSGWLDIACNMP
                     ISKGMRVLTDSERVRERRKETLKFITLNHPVDCGICDKAGECTLQDYHYEYNGSPSIS
                     RDAKVHATKHYKLSERIVLDNERCIMCTRCVRFTREISKTNSLGVQNRGDHSLIRPVE
                     DGAFEADHYSDNVIDICPVGALLSTQFLHKARVWYLQPTPSVCPGCERGCTVNIWHRK
                     NEWKLKALDAKQNARIDRVTPLENPAVNGPWICNKGRDLAKVFERARAEEALLKGRPT
                     ELQTAIDTARALISAARRPVALVSNWGSNEELAAFDKALGLRLSCYVKTDCQPEPGEP
                     IEDDLLIRPDKNPNSAAARALFPPLPADARSAFPSDCDLVLVWGEGFSFAQLPPAAKI
                     VYLNSWLRPENGHADVFLPISVQTERSGHYTNFRGGVSAFAACFGKKPGVIDAQALFA
                     ALAAPVAAVSP"
     gene            1383..2528
                     /locus_tag="VF308_14985"
     CDS             1383..2528
                     /locus_tag="VF308_14985"
                     /inference="COORDINATES: protein motif:HMM:NF012373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I subunit 1 family protein"
                     /protein_id="HEX7438010.1"
                     /translation="MTQDLVVYLIYIAYAVGMLMGFGTVLTWVERKQAAVMSDRIGAN
                     RAYIRLPYTQIKLIWLGLFHGIADGIKMLVKEDFKPRTYDWYAYAVAPWVVFTPVLLV
                     FCVIPFGGLLDPGRLFPGLADWFGGRTYPMQIARLDAGLLMVFAFSGMTIIGTMLAGW
                     ASANKFSLLGGLRAGSQMISYELVMGLTVLGLILIFGTVDLNSMVRQQSGLVFGFLPA
                     WGVVYQPFAAVLFMTAAIAENKRIPFDLPEAESELIAGYYTEYSAMKMGLFMFAEFIE
                     IAIIGALFTTMFLGGYNLPYMNDSGFTLPGGTVVAMGHAAVVVTQLVVFLLKVLVVCS
                     FQILIRWTLPRFRYDQVLGFAWKFMLPLALLNLSVTAVLVWLQQGGA"
     gene            2528..3121
                     /locus_tag="VF308_14990"
     CDS             2528..3121
                     /locus_tag="VF308_14990"
                     /inference="COORDINATES: protein motif:HMM:NF024585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEX7438011.1"
                     /translation="MKPQYKRKQYWNEPEMTVWERSYLPEIVRGLIVTSIVFLRNMGH
                     WMTGRKGALTTYYPEETRFDYAPLNRGKHILTQRPDGSPQCIACNMCATVCPAKVIEI
                     EAGFDESDSAHPKFPIRFEIDYSRCVFCGLCVEACPEDAIRMVKETPGLPSDSRGQMW
                     LTLEEMLTWQPASDVAKPYPAKAAAAGGAPAQKGHAP"
     gene            3118..3666
                     /locus_tag="VF308_14995"
     CDS             3118..3666
                     /locus_tag="VF308_14995"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEX7438012.1"
                     /translation="MTAFLDGLLGHLDTLLLAVFSLSALTAATLMIFLRQPMRVAIAL
                     ISTMVFLGGIYGLLGVHFVAAFQVLIYVGAVMVFMVYVIMLLEVREHGVARYSRLLLP
                     GVAGFAMVLGAILISIWRALPAPNKATDGAAFGIGKFSVAFLNEYWLQFELTSVLLVA
                     AVVAALAVIRVSRRTDRTRPHG"
     gene            3659..3961
                     /gene="nuoK"
                     /locus_tag="VF308_15000"
     CDS             3659..3961
                     /gene="nuoK"
                     /locus_tag="VF308_15000"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004320.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEX7438013.1"
                     /translation="MDRTQMLLAVAVGLFSLGLLGVIVRRNVLVMLMCMELMLNGVNL
                     SLVTFAQQTATTAGAVLVFLIFVVATAEIALAIPIVLLLVRDKRTLDLDAYSDLKG"
     gene            3967..>5317
                     /gene="nuoL"
                     /locus_tag="VF308_15005"
     CDS             3967..>5317
                     /gene="nuoL"
                     /locus_tag="VF308_15005"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEX7438014.1"
                     /translation="MPGVLTAIVLLPLLGFLLNGVLATQLGGNLVGKRFVTVVGCGLP
                     LLAFALAIKSVLDLQAGGYAPLVETAYRWALIGSSSFDVAFYFDRLTAIMVLVVTGVG
                     SVIHVYSVGYMAHDKSFGRFFAYLNLFLFFMLLLVLGRSLLVLFVGWEGVGLASYLLI
                     GFWFDDLANAVAGKKAFITNRVGDAGFLLGMFVLYQAFGTLDMDRINAAFGVGAAAVV
                     PAGLVGILLFIGATGKSAQIPLHVWLPDAMAGPTPVSALIHAATMVTAGVYLVARMSG
                     IYLQAPEASMVIAVIGVATAFFAATIAIAQSDIKKVLAYSTISQLGFMFLALGVGAYG
                     VAIFHLVTHAFFKACLFLGAGSVIHALSGEQDMRKMGGLARKIPVTFVTFAVATAAIA
                     GIPPLAGFFSKDEILWYAFASTRGGSPLLWLVAAATALMTAFYMFRLLWLTFLGSSRV
                     "
BASE COUNT          781 a         1891 c         1689 g          956 t
ORIGIN      
        1 ttctacattc cgtatttctg ctggcatccg cagctctcgg tgccgggcaa ctgccgcatc
       61 tgcgcggtcg aggtgaccaa cgagggccag gccgccggca gcggttggct cgacatcgcc
      121 tgcaacatgc cgatcagcaa gggcatgcgc gtgctcaccg actccgagcg ggtccgggag
      181 cggcgcaagg agacgttgaa gttcatcacc ctgaaccacc cggtcgactg cggcatctgc
      241 gacaaggccg gcgagtgcac gctgcaggac taccactacg aatacaacgg ctcgccctcg
      301 atctcgcgcg acgccaaggt ccacgccacc aagcactaca agctttccga gcgcatcgtc
      361 ctcgacaacg agcgctgcat catgtgcacg cgctgcgtgc gcttcacgcg cgagatctcc
      421 aagacgaatt ccctgggcgt gcagaaccgc ggcgaccact cgctgatccg cccggtcgaa
      481 gacggcgcgt tcgaggccga tcactactcc gacaacgtga tcgacatctg cccggtcggc
      541 gcgctcctgt cgacgcagtt cctgcacaag gcgcgcgtct ggtacctgca gcccacgccc
      601 tcggtgtgcc cgggctgcga gcgcggctgc acggtcaaca tctggcaccg caagaacgag
      661 tggaagctca aggcgctgga cgcgaagcag aacgcccgca tcgaccgcgt cacgccgctg
      721 gagaacccgg ccgtcaacgg cccgtggatc tgcaacaagg ggcgcgacct ggcgaaggtc
      781 ttcgaacgcg cacgcgctga agaggccctg ctcaagggcc ggccgaccga gcttcagacg
      841 gccatcgaca ccgcccgggc gctgatcagc gcggcgcggc ggccggttgc gctggtctcg
      901 aactggggct cgaacgaaga gctcgccgca ttcgacaagg cgctgggcct gcgcctgagc
      961 tgctacgtca agaccgattg ccaacccgaa ccgggtgagc cgatcgagga cgacctgctc
     1021 atcaggcccg acaagaaccc gaacagcgcc gccgcgcgag cgctcttccc acccttgccg
     1081 gccgacgcgc gcagcgcctt cccgagcgac tgcgacctgg tgctggtctg gggcgaaggc
     1141 ttcagcttcg cgcagctgcc gccggcggcc aagatcgtct acctcaacag ctggctgcgg
     1201 ccggagaacg gccacgccga cgtcttcctg ccgatcagcg tgcagaccga gcgcagcggc
     1261 cactacacca acttccgggg cggggtcagc gccttcgcgg cctgcttcgg caagaagccc
     1321 ggcgtgatcg acgcgcaggc cctgttcgcc gccctcgcgg cacccgttgc ggcggtctcg
     1381 ccatgaccca ggatctcgtc gtctacctca tctacatcgc ctacgcggtg gggatgctga
     1441 tgggcttcgg caccgtgctg acctgggtcg aacgcaagca ggcggcggtg atgtccgacc
     1501 gcatcggcgc caatcgcgcc tacatccgcc tgccctacac ccagatcaag ctgatctggc
     1561 tgggcctctt ccatggcatc gccgacggca tcaagatgct ggtcaaggag gacttcaagc
     1621 cgcgcaccta cgactggtac gcctacgcgg tggcgccgtg ggtcgtgttc acgccggtgc
     1681 tgctggtctt ctgcgtgatc ccgtttggcg gcctgctcga tccgggtcgg ctgtttccgg
     1741 gcctcgccga ctggttcggc ggccggacct atccgatgca gatcgcgcgg ctcgacgccg
     1801 gcctgctgat ggtcttcgcc ttcagcggca tgaccatcat cggcaccatg ctggcgggct
     1861 gggcctcggc caacaagttc tcgctgctcg gcggcctgcg cgcgggctcg cagatgatct
     1921 cgtacgagct cgtcatgggc ctgaccgtgc tcggcctgat cctgatcttc ggcaccgtcg
     1981 acctcaactc gatggtgcgc cagcagtcgg gcctggtgtt cggcttcctg ccggcctggg
     2041 gcgtcgtcta ccagcccttc gcggcggtgc tgttcatgac cgcggcgatc gccgagaaca
     2101 agcgcatccc gttcgacctg cccgaggccg agtccgagct catcgccggc tactacaccg
     2161 aatacagcgc gatgaagatg ggcctgttca tgttcgccga gttcatcgag atcgcgatca
     2221 tcggcgccct cttcacgacc atgttcctcg gtggctacaa cctgccgtac atgaacgaca
     2281 gcggcttcac cctgcccggc ggcacggtcg tcgcgatggg ccacgccgcc gtcgtcgtga
     2341 cgcagctcgt cgtcttcctg ctcaaggtgc tggtggtgtg cagcttccag atcctcattc
     2401 gctggacgct gccgcgcttc cgctacgacc aggtgctcgg cttcgcctgg aagttcatgc
     2461 tgccgctggc gctgctcaac ctgagcgtca ccgccgtgct cgtgtggctg cagcaggggg
     2521 gcgcgtagtg aagccgcagt acaagcgcaa gcagtactgg aacgagccgg agatgacggt
     2581 ctgggaacgc tcgtacctgc ccgagatcgt ccgcggcctg atcgtcacca gcatcgtctt
     2641 cctgcgcaac atgggccact ggatgaccgg caggaagggc gcgctgacca cctactaccc
     2701 ggaagagacc cgcttcgact acgcgccgct caaccgcggc aagcacatcc tgacgcagcg
     2761 ccccgacggc agcccgcagt gcattgcctg caacatgtgc gcgacggtgt gcccggccaa
     2821 ggtgatcgag atcgaggccg ggttcgacga gtccgacagc gcgcacccga agttcccgat
     2881 ccgcttcgag atcgactact cgcgctgcgt cttttgcggc ctgtgcgtcg aggcctgccc
     2941 cgaggacgcc atccgcatgg tcaaggaaac gccggggctg ccctcggact cgcgcggcca
     3001 gatgtggctg acgctcgagg agatgctcac ctggcagccg gccagcgacg tcgccaagcc
     3061 ctaccctgcc aaagccgcgg cggccggcgg cgcgccggcg cagaaggggc acgcgccgtg
     3121 accgccttcc tcgacggcct gctcggccac ctcgacacgc tgctgctggc ggtgttctcg
     3181 ctgtcggcac tgacggcggc gacgctgatg atcttcctgc gccagccgat gcgcgtggcg
     3241 atcgccctga tctcgaccat ggtcttcctc ggcggcatct acggcctgct cggcgtgcac
     3301 ttcgtcgccg ccttccaggt gctgatctat gtcggcgcgg tgatggtctt catggtctac
     3361 gtcatcatgc tgctcgaggt gcgcgagcac ggcgtcgccc gctattcgag gctgctgctg
     3421 cccggcgtcg ccggcttcgc gatggtgctg ggcgcgatcc tgatcagcat ctggcgcgcc
     3481 ctgccggcgc cgaacaaggc gaccgacggc gccgccttcg gcatcggcaa gttctcggtc
     3541 gccttcctca acgagtactg gctgcagttc gagctgactt cggtgctgct ggtggcggcc
     3601 gtggtggcgg cgctggcggt gatccgggtc agccgcagga ccgacaggac gaggccccat
     3661 ggataggacg caaatgctgc tcgcggtggc cgtcggcctg ttctcgctcg ggctgctcgg
     3721 cgtgatcgtc cgccgcaacg tgctcgtgat gctgatgtgc atggagctca tgctcaacgg
     3781 cgtcaacctg agcctggtca ccttcgcgca gcagacggcc acgaccgccg gcgcggtgct
     3841 cgtgttcctg atcttcgtcg tagccaccgc cgagatcgcg ctggccatcc ccatcgtcct
     3901 gctcctggtc cgcgacaagc gcacgctgga cctcgacgcc tacagcgacc tcaaaggctg
     3961 atgcccatgc ccggcgtgct caccgccatc gtcctgctgc cgctgctcgg cttcctgctg
     4021 aacggcgtgc tcgccacgca gctcggcggc aacctcgtcg gcaagcgctt cgtcacggtc
     4081 gtcggctgcg ggttgccgct gctggccttc gccctcgcga tcaagtcggt gctcgacctg
     4141 caggccggcg gctacgcccc gctggtcgag accgcctacc gctgggcgct gatcggcagc
     4201 agcagcttcg acgtcgcctt ctacttcgac cgcctgaccg cgatcatggt gctggtcgtc
     4261 accggcgtcg gctcggtgat ccacgtctac tcggtcggct acatggcgca cgacaagagc
     4321 ttcggccgct tcttcgccta tctcaacctg ttcctgttct tcatgctcct gctcgtgctg
     4381 ggccggtcgc tgctggtcct gttcgtcggc tgggaaggcg tcggcctcgc ctcgtacctg
     4441 ttgatcggct tctggttcga cgacctcgcc aacgcagtgg ccggcaagaa ggccttcatc
     4501 accaaccgcg tcggcgacgc cggcttcctg ctcggcatgt tcgtgctcta ccaggccttc
     4561 ggcacgctcg acatggaccg catcaatgcc gcgttcggcg tcggcgccgc cgcggtggtg
     4621 ccggccggcc tggtcggcat cctgctgttc atcggcgcca ccggcaagtc ggcgcagatc
     4681 cccttgcacg tctggctgcc cgacgcgatg gccggcccga cgccggtctc ggcgctgatc
     4741 cacgcggcga cgatggtcac ggccggcgtc tacctggtcg cccgcatgtc gggcatctac
     4801 ctgcaggcgc ccgaggcgtc gatggtgatc gccgtcatcg gcgtcgccac cgcgttcttc
     4861 gccgccacca tcgccatcgc ccagagcgac atcaagaagg tgctggccta ctccacgatc
     4921 tcgcagctcg gcttcatgtt cctcgccctc ggcgtcggcg cctacggggt ggcgatcttc
     4981 cacctcgtca cccatgcctt cttcaaggcc tgcctcttcc tcggcgccgg cagcgtgatc
     5041 cacgccctct cgggcgagca ggacatgcgc aagatgggcg ggctggcacg caagatcccg
     5101 gtcactttcg tcaccttcgc ggtggccacc gccgccatcg ccggaatccc gccgctggcc
     5161 ggcttcttct cgaaggacga gatcctctgg tacgccttcg ccagcacgcg cggcggctcg
     5221 ccgctgctgt ggctggtggc cgcagcgacg gcgctgatga cggcgttcta catgttccgg
     5281 ctgctctggc tgacgttcct cggcagctcg cgcgtgg
//
LOCUS       DASVHM010000820         1579 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_347442, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000820 DASVHM010000000
VERSION     DASVHM010000820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347442"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1239
                     /locus_tag="VF308_15010"
     CDS             <1..1239
                     /locus_tag="VF308_15010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005797721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7438015.1"
                     /translation="AENVWLGVDRSLSLAQVTQSITAKAAEYGLDIDPARHVHTLSVG
                     EMQRVEIIRALLTQPQLLILDEPTSVLTPQAVDKLFVTLRKLASEGCSILYISHKLDE
                     IRALCHNCTVLRGGRVTGEVDPTKESNASLSRLMIGAEPPQLQHVAARLGAVVLAVRG
                     LTLAKMDQFGMNLEAIGFEVRAGEIVGIAGVSGNGQQELMAALSGEDTRAPAGSIRLF
                     DTDISRQLPRPRRDAGLHFVPEERLGRGAVPILSLAQNTLLTRTASVARSGWIRTGEV
                     VALAEELIRRFNVKAGGPGAAAKSLSGGNLQKFLVGREIDANPKLLIVSQPTWGVDVG
                     AAAQIRGELLALRDQGCALLVVSEELDELFEICDRLVVIAKGRVSPSVPTSEATIEMI
                     GEWMSGLWNRNAQEVQHVEA"
     gene            1226..>1579
                     /locus_tag="VF308_15015"
     CDS             1226..>1579
                     /locus_tag="VF308_15015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7438016.1"
                     /translation="MLKLEVRPEPSRLMSIASPLLALAITVVIGTCLFLLLGKDPLRG
                     LYIFFIEPAKSVYALTELAMKAVPLALIALGLAVCFRSNVWNIGAEGQFILGAIAASG
                     VAMLADKETGRWIVAA"
BASE COUNT          242 a          536 c          552 g          249 t
ORIGIN      
        1 gccgagaacg tctggctggg cgtggatcgc agcctgtcgc tggcccaggt gacgcagagc
       61 atcaccgcca aagccgccga gtacggcctg gacatcgacc cggcccgcca tgtgcacacc
      121 ctgtcggtgg gcgagatgca gcgggtcgag atcatccgcg cgctgctgac ccagccccaa
      181 ttgctgattc tggacgaacc gacctcggtg ctgacgccgc aggcggtcga caagctcttc
      241 gtcacgctgc gcaagctcgc atccgaaggc tgcagcatcc tctacatcag ccacaagctc
      301 gacgagatcc gcgcgctctg ccacaactgc acggtgctgc gcggcggccg cgtcaccggc
      361 gaggtcgacc cgacgaagga gagcaacgcg agcctgtcgc gcctgatgat cggcgccgag
      421 ccgccgcagc tgcagcacgt cgcggccagg ctcggcgccg tggtgctcgc ggtgcgcggc
      481 ctgacgctcg ccaagatgga tcagttcgga atgaacctcg aggccatcgg cttcgaggtg
      541 cgcgccggcg agatcgtcgg catcgccggt gtgtcgggca acggccagca ggaactgatg
      601 gcggcgctgt cgggcgaaga cacccgcgcg ccggccggtt cgatccgcct cttcgacacc
      661 gacatctcgc gccagctgcc gcgcccgcgg cgcgacgcgg gcctgcattt cgttcccgag
      721 gagcgcctcg gccgcggcgc ggtgccgatc ctgtcgctgg cgcagaacac gctgctcacg
      781 cgcaccgcga gcgtcgcgcg ctcgggctgg atccgcaccg gcgaggtggt cgcgctggcc
      841 gaggaactga tccgccgttt caacgtcaag gccggcggcc cgggggccgc ggcgaagagc
      901 ctgtcgggcg ggaatctgca gaagttcctg gtcggccgcg agatcgacgc gaacccgaaa
      961 ttgctgatcg tctcgcagcc gacctggggc gtcgacgtcg gcgccgcggc gcagattcgc
     1021 ggcgagctgc tcgcgctgcg cgaccagggc tgcgcgctgc tcgtcgtcag cgaggagctc
     1081 gacgaattgt tcgagatctg cgaccgcctc gtcgtgatcg cgaagggccg ggtctcgccg
     1141 agcgtgccga cctcggaggc gacaatcgag atgatcggcg aatggatgag cggcttgtgg
     1201 aaccgcaatg cgcaggaggt ccagcatgtt gaagcttgaa gtccgccccg agccgtcgcg
     1261 gctgatgtcg atcgcgtcgc ccttgctcgc gctcgcgatt acggtcgtga tcggcacctg
     1321 cctcttcctg ctcctcggca aggacccgtt gcgcgggctc tacatcttct tcatcgagcc
     1381 ggcgaagagc gtctatgcgc tgaccgaact ggcgatgaag gcggtgccgc tggcgctgat
     1441 cgccctcggc ctcgcggtgt gctttcgttc gaacgtctgg aacatcggcg ccgaaggcca
     1501 gttcatcctc ggcgcgatcg cggcgagcgg ggtcgcgatg ctcgccgaca aggagaccgg
     1561 gcgctggatc gtcgccgcg
//
LOCUS       DASVHM010000821         2617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1288101, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000821 DASVHM010000000
VERSION     DASVHM010000821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1288101"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1023
                     /locus_tag="VF308_15020"
     CDS             <1..1023
                     /locus_tag="VF308_15020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006221632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEX7438017.1"
                     /translation="GCATASDGEPLQVLRRTLGGYARHPNFASILVVGLGCETNQISG
                     LMEQESLATGIALHTFNIQDTGGTKKTVAHGVELVQWLLEEANRVKRQPVGASHIMVG
                     LQCGGSDGYSGISANPALGAAVDRLVRHGGTAILSETPEIYGGEHLLTRRAVSVAVAD
                     KLIARIRWWERYTERNDAEMDNNPSAGNKAGGLTTILEKSLGAIAKSGTTNLVDVFEY
                     AQPVTTKGLVFMDTPGYDPVSATGQVAGGANLICFTTGRGSAYGCAPSPSIKLGTNTA
                     LWQRQEDDIDINCGEVIDGTASIDEMGERIFRRMLETASGAKTKSEIHGYGQNEFVPW
                     ALGAVM"
     gene            complement(1041..1502)
                     /locus_tag="VF308_15025"
     CDS             complement(1041..1502)
                     /locus_tag="VF308_15025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HEX7438018.1"
                     /translation="MKDELSPERCNALALRQATRHVSQFYDQHLAASGLKGTQFSIVA
                     RLSRGGPRSINDLARDLVMDRTTLGRNLRPLERDGLVRLEVDAADRRSRRLSVTARGA
                     ALFEQAWPAWQAAQRQFEKAFGRDEAAALRTLMRVVTETDLAPPAAREPAR"
     gene            1548..>2617
                     /locus_tag="VF308_15030"
     CDS             1548..>2617
                     /locus_tag="VF308_15030"
                     /inference="COORDINATES: protein motif:HMM:NF013703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEX7438019.1"
                     /translation="MRAYSIGIGTAFAPTPQEKAERRTAMMLHAPVLATLCTLALPNM
                     MMMSAQALANFLESYFVGLLGVAELAGVALVYPLIMLMQMLSAGAIGGGISSAIARAL
                     GAGRRAEAESVALHAVVIALAAGGLSTAALLLGGRTLYGAMGGDGAALAAALAYSNVV
                     FTGAVFLWLLNALASVLRGTGNMALPAGVATAGVPILLIASPILIFGFGPVPALGIRG
                     AALALVVYYVAGSAVLLAALLRGHGGLRLTFAPRLRREVFHNILGVGGPAAVNSTMTN
                     LAVGVATAFVGGLGIHVLAGFGLGIRLEYLLIPIVFGIGAAMIPMIGMNVGAGNLRRA
                     REVAWVGAFVAAGVTGMLGIAAA"
BASE COUNT          378 a          908 c          921 g          410 t
ORIGIN      
        1 ggctgcgcca cggcgagcga cggcgagccc ttgcaggtgc tgcgccgcac cctcggcggc
       61 tatgcgcggc atccgaactt cgcctcgatc ctcgtcgtcg ggctcggttg cgagaccaac
      121 cagatctcgg gcctgatgga acaggagagc ctcgcgaccg gaatcgcact gcacaccttt
      181 aacatccagg acacgggcgg gacgaagaag accgtcgcgc acggcgtcga actcgtgcag
      241 tggctgctcg aggaggcgaa ccgcgtgaag cgccagccgg tcggcgcgag ccacatcatg
      301 gtcgggctgc agtgcggcgg ctccgacggc tattccggca tcagcgcgaa cccggccctc
      361 ggcgccgccg ttgaccggct ggtgcgccac ggcggcaccg cgatcctttc cgaaacgccc
      421 gagatctacg gcggcgagca cttgttgacg cgccgcgccg tctcggtggc cgtggccgac
      481 aagctgatcg cgcgcattcg ctggtgggag cgctacaccg aacgcaacga cgccgagatg
      541 gacaacaacc catcggcggg caacaaggcc ggcgggctca cgaccatcct cgagaagagc
      601 ctcggcgcga tcgccaagag cggcaccacc aacctggtgg acgtgttcga gtacgcccag
      661 ccggtgacga ccaagggcct tgtcttcatg gacacgcccg gctacgaccc ggtctcggcg
      721 accggacagg tcgcgggcgg ggcgaacctc atctgcttca cgaccggccg cggctcggcc
      781 tacggctgcg cgccctcacc ctcgatcaag ctcggcacca acacggcgct gtggcaaagg
      841 caggaagacg acatcgacat caactgcggc gaggtgatcg acggcaccgc ctcgatcgac
      901 gagatgggcg aacgcatctt ccgccgcatg ctggaaaccg cctcgggcgc gaagaccaag
      961 agcgagatcc acggctacgg acagaacgaa ttcgtgccct gggcgctcgg cgccgtgatg
     1021 tagcgcggcg ccgagcgccg tcagcgtgcg ggttcccggg ccgcaggcgg tgcgagatcg
     1081 gtctcggtca cgacccgcat caacgtgcgc agcgccgccg cctcgtccct gccgaaggcc
     1141 ttctcgaact gccgctgcgc cgcctgccag gccggccacg cctgctcgaa gagggccgcg
     1201 ccgcgcgcgg tcaccgagag ccggcggctg cgccggtcgg cggcgtcgac ctcgagtcgg
     1261 accaagccgt cgcgttcgag cgggcggagg ttgcgcccga gcgtggtgcg gtccatcacc
     1321 aggtcgcgcg cgagatcgtt gatcgagcgc ggcccgccgc ggctcaggcg ggcgacgatc
     1381 gagaactgcg tgcccttcag gccggatgcg gccagatgct ggtcgtagaa ctggctgacg
     1441 tggcgcgtcg cctggcgcag cgcgagggca ttgcaacgtt cgggagagag ttcgtctttc
     1501 atggcgcggt ccttgacgga ggccgggaca accgataata tgcgtatatg cgcgcttatt
     1561 caatcggcat cggcacggcc ttcgcaccga ctccgcagga aaaggccgag cggcgcaccg
     1621 ccatgatgct gcatgcgccc gtgctggcca cgctgtgcac cctggcgctg ccgaacatga
     1681 tgatgatgtc ggcgcaggcg ctcgccaact tcctcgagag ctatttcgtc ggcctgctcg
     1741 gggtggccga gctcgccggg gtcgcgttgg tgtatccgct catcatgctg atgcagatgc
     1801 tgtcggccgg cgcgatcggc ggcggcatct cgtcggcgat cgcccgtgcg ctcggcgccg
     1861 gtcgccgcgc cgaggccgag tcggtcgcgc tgcatgcggt ggtgatcgcc ctcgcggcgg
     1921 ggggcttgtc gaccgcggcg ctgctgctcg gcggccgcac gctctacggc gcgatgggcg
     1981 gcgacggcgc ggctctcgcc gctgcgctcg cctattcgaa cgtcgtcttc accggcgccg
     2041 tgttcctatg gctcctcaac gcgctcgcca gcgtcctgcg cggcaccggc aacatggcgc
     2101 tgccggccgg cgtcgcgacc gccggtgtgc cgatcctgct catcgcgtcg ccgatcctga
     2161 tcttcggctt cggcccggtg ccggccctcg gtatccgcgg cgcggcgctg gccttggtgg
     2221 tgtactacgt ggccggcagc gcggtgctgc tcgccgcctt gctgcgcgga catggcggcc
     2281 tgcgcctgac ctttgcgcca cgcctgcggc gcgaggtgtt tcacaacatt ctcggcgtcg
     2341 gcggaccggc cgcggtgaac agcacgatga cgaatctggc ggtcggagtc gcgacagcct
     2401 tcgtcggcgg gctcggcatc cacgtgctgg ccggcttcgg tctcggcatc cggctcgagt
     2461 acctcttgat cccgatcgtg ttcggcatcg gcgcggcgat gattccgatg atcggcatga
     2521 acgtcggcgc cggcaacctg cgccgtgccc gcgaggtggc ctgggtcggc gcgttcgtgg
     2581 cagccggcgt cacgggcatg ctcggcatcg ccgcggc
//
LOCUS       DASVHM010000822         2608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1213710, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000822 DASVHM010000000
VERSION     DASVHM010000822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1213710"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VF308_15035"
     CDS             <1..217
                     /locus_tag="VF308_15035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438020.1"
                     /translation="LYLAYSANDRPRAATGSVLDRPAASAPAAASSGAAAIPGVAGGG
                     AAAPAVAPTAAPSAPVAASGAGAIPQK"
     gene            292..376
                     /locus_tag="VF308_15040"
     tRNA            292..376
                     /locus_tag="VF308_15040"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:326..328,aa:Leu,seq:gag)
     gene            381..740
                     /locus_tag="VF308_15045"
     CDS             381..740
                     /locus_tag="VF308_15045"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEX7438021.1"
                     /translation="MTLDPYLPVILFILIGVAVGVAPQLLGFLLGPRRPDQAKNSPYE
                     CGFEAFEDARMKFDVRYYLVAILFILFDLEIAFLFPWAVALREIGPAGFWAMMIFLAI
                     LVVGFAYEWKKGALDWE"
     gene            744..1220
                     /locus_tag="VF308_15050"
     CDS             744..1220
                     /locus_tag="VF308_15050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HEX7438022.1"
                     /translation="MALDGVLKEGFVTTSLDSVINWSKTGSLWPMTFGLACCAVEMMH
                     AGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSC
                     ANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGVLQLQAKIRRENTIAR"
     gene            1234..1830
                     /locus_tag="VF308_15055"
     CDS             1234..1830
                     /locus_tag="VF308_15055"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018313197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEX7438023.1"
                     /translation="MSKLDTLQEALVAGFGDRVRKLDRALGELTLTVAAVDYLGVALQ
                     LRDQPELQFEQMIDLCGVDYSSYRDVPWEGLRFCVVTHLLSLTHNWRLRLKVFCPDDD
                     VPQVASLTDVWSAANWYEREAFDLFGIIFDGHVDLRRILTDYGFIGHPFRKDFPVSGT
                     VEMRYDPEQKRVIYQPVTIEPREITPRVIREDNYGGLH"
     gene            1833..>2608
                     /locus_tag="VF308_15060"
     CDS             1833..>2608
                     /locus_tag="VF308_15060"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014616656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HEX7438024.1"
                     /translation="MADIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLH
                     RATEKLAETRTYIQSLPYMDRLDYVSMMCNEHAYCLAIEKLLGVDVPIRAQYIRVMFS
                     EITRLMNHLMWLGAHGLDCGAMNIFIYCFREREDLFDMYEAASGARMHAAYFRPGGVY
                     RDLPDTMAQYRESKIRGAKATGELNANRSGSLLDFIDDFSKRFPEKVDEYETLLTDNR
                     IWKQRTVGIGVVTPERAKNLGFTGPMLRGSGILWDLRKHQP"
BASE COUNT          423 a          941 c          807 g          437 t
ORIGIN      
        1 gctctatctc gcctacagcg cgaacgaccg gcccagggct gccaccggca gcgtcctcga
       61 ccgcccggct gcgagcgcgc cggccgccgc atcgtcgggc gcggcggcga tccccggcgt
      121 cgccggcggc ggcgccgcag cgcccgcggt cgcaccgacc gcggcgccga gcgcgccggt
      181 ggccgcgtcc ggagccggcg cgattccgca gaagtagagt cccctcagct agaattcaag
      241 gttgcccggc gagccattcc tcacgccagc cgggcagcga attcgagtgc cgccgacgtg
      301 gtgaaattgg tagacacgct atcttgaggg ggtagtggcg aaagctgtgc gagttcgagt
      361 ctcgccgtcg gcaccatctc atgaccctcg acccctacct ccccgtcatc ctcttcatcc
      421 tgatcggggt ggcggtcggc gtcgcgccgc agctgctggg cttcctcctc ggcccgcgcc
      481 ggccggacca ggccaagaac tcgccctacg aatgcggctt cgaggccttc gaggacgcgc
      541 gcatgaagtt cgacgtccgc tactacctgg tcgcgatcct tttcatcctg ttcgatctcg
      601 agatcgcgtt cctcttcccg tgggcggtcg ccttgcgcga gatcggcccg gccggcttct
      661 gggcgatgat gatcttcctc gccatcctcg tcgtcggctt cgcctacgag tggaaaaagg
      721 gcgccctcga ctgggaatga cgaatggctc ttgacggcgt tctcaaggaa ggtttcgtca
      781 cgacgagcct cgattcggtc atcaactggt ccaagaccgg ctcgctctgg ccgatgacct
      841 tcggcctcgc ctgctgcgcg gtcgagatga tgcacgccgg cgcggcgcgc tacgacatcg
      901 accgcttcgg catgctgttc cggccgagcc cgcgccagag cgacctgatg atcgtcgccg
      961 gcacgctctg caacaagatg gcgccggcgc tgcgcaaggt ctacgaccag atggccgagc
     1021 cgcgctgggt gatctcgatg ggctcgtgcg cgaacggcgg cggctactac cactacagct
     1081 actcggtcgt tcgcggctgc gaccgaatcg tcccggtcga cgtctacgtg cccggctgcc
     1141 cgcccacggc cgaggcgctg ctctacggcg tgctgcaact gcaggcgaag atccgccgcg
     1201 agaacacgat cgcgcgttga gcgcaccccg acgatgagca agctcgacac cttgcaggaa
     1261 gcgctcgtgg ccggtttcgg tgatcgcgtc aggaagctcg atcgcgccct cggcgagctg
     1321 acgctcaccg tcgctgccgt cgactacctc ggcgtcgcgc tgcagcttcg cgaccagccc
     1381 gagctgcagt tcgagcagat gatcgacctg tgcggcgtcg actactcgag ctaccgcgac
     1441 gtgccgtggg aaggattgcg cttctgcgtc gtcacgcacc tgctctcgct cacccacaac
     1501 tggcgcttgc gcctgaaggt cttctgcccc gacgacgacg tgccgcaggt cgcctcgctc
     1561 accgacgtgt ggagcgccgc caactggtac gagcgcgagg ccttcgatct cttcggcatc
     1621 atcttcgacg gccacgtcga cctgcgccga atcctcaccg actacggctt catcggccat
     1681 ccgttccgca aggacttccc ggtctcggga acggtcgaga tgcgctacga ccccgagcag
     1741 aagcgcgtca tctaccagcc ggtgacgatc gagccgcgcg agatcacgcc gcgcgtcatc
     1801 cgcgaagaca actacggcgg cctgcattag ccatggccga catcaagaac tacaccctca
     1861 acttcgggcc gcagcacccg gcggcgcacg gcgtgctgcg cctcgtcctc gagctcgacg
     1921 gcgaggtgat ccagcgcgcc gacccgcaca tcggcctgct ccaccgcgcc accgagaagc
     1981 tcgccgagac gcgaacctac atccagtcgc tgccctacat ggaccggctc gactacgtct
     2041 cgatgatgtg caacgagcac gcctactgcc tggcgatcga gaagctcctc ggcgtcgacg
     2101 tgccgatccg cgcccagtac atccgcgtca tgttctccga gatcacgcgc ctcatgaacc
     2161 acctgatgtg gctcggcgcg cacggcctcg actgcggcgc gatgaacatc ttcatctact
     2221 gcttccgcga gcgcgaggac ctgttcgaca tgtacgaggc ggcgtcgggc gcgcgcatgc
     2281 atgcggccta tttccggccg ggcggcgtct accgcgacct gcccgacacg atggcgcagt
     2341 accgcgagtc gaagatccgc ggcgccaagg cgaccggcga gctcaacgcg aaccgctccg
     2401 gctcgctcct cgacttcatc gacgatttct cgaagcgctt ccccgagaag gtcgacgagt
     2461 acgagacgct cctcaccgac aaccggatct ggaagcagcg cacggtcggc atcggcgtcg
     2521 tcactccaga gcgcgccaag aacctcggct tcaccgggcc gatgctgcgc ggctcgggca
     2581 tcctctggga cctgcgcaag caccagcc
//
LOCUS       DASVHM010000823         1865 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_854035, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000823 DASVHM010000000
VERSION     DASVHM010000823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_854035"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..717)
                     /gene="era"
                     /locus_tag="VF308_15065"
     CDS             complement(<1..717)
                     /gene="era"
                     /locus_tag="VF308_15065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013902174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEX7438025.1"
                     /translation="MRCGLVAIVGRPNVGKSTLLNALVAQKISITSNKAQTTRHRITG
                     IRTRGEAQFVFVDTPGFQTRHVAALNRSLNRAVTGTLSDVDVVLLVVEAGRFGPDDAA
                     VLALVDPAKPVLLVANKLDTVTRRADLAPWLQQMQQRYAFAEFVPMTANKAADAERLL
                     TIVEPYLPEQPWLYDEDALTDRSDRFLAAEVVREKLFRLTGDELPYTSTVVIDKYEEE
                     GGLRRIAATIVVERDAHKGMI"
     gene            complement(717..1421)
                     /gene="rnc"
                     /locus_tag="VF308_15070"
     CDS             complement(717..1421)
                     /gene="rnc"
                     /locus_tag="VF308_15070"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEX7438026.1"
                     /translation="MDSSLDALQQRIGHRFADPALMELALTHRSYGADHNERLEFLGD
                     AVLSLVVSSLLYDRLGDSDEGDLTRVRAHLVREDSLYRAALQLGLPESLRLGEGEARG
                     GGALRSSILADALEALIGATFLDGGLTAARTLVHSLFGEVIETTEVASWAKDAKTELQ
                     EWLQARRIPVPSYRIIATRGQAHAQTFEVECAVPALSLQETGEGKSRRAAEQEAARRM
                     LDALRDSDEPGSPLRS"
     gene            complement(1460..1825)
                     /locus_tag="VF308_15075"
     CDS             complement(1460..1825)
                     /locus_tag="VF308_15075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4845 domain-containing protein"
                     /protein_id="HEX7438027.1"
                     /translation="MIGQVDKASRQRGVTLFGLLFWAVIVGFLALIGMRVLPALNEYF
                     TIKRTIAKIATEGSTVPDIRAAFERQKDIEYSIVSITGKDLVVTKENEKVVVSFAYDK
                     EVELVKPVFLLIKFEGRSN"
BASE COUNT          275 a          600 c          671 g          319 t
ORIGIN      
        1 gatcatgccc ttgtgggcat cgcgctcgac cacgatcgtc gcggcgatgc ggcgcaggcc
       61 gccttcctct tcgtacttgt cgatgacgac ggtcgaggtg tagggcagct cgtcgccggt
      121 gaggcggaac agcttctcgc gcacgacctc ggcggcgagg aagcggtcgc tgcggtcggt
      181 gagcgcgtct tcgtcgtaga gccagggttg ctcgggcaag tagggctcga cgatcgtcag
      241 cagccgctcg gcgtcggccg ccttgttcgc cgtcatcggc acgaactcgg cgaaggcgta
      301 tcgctgctgc atctgctgca gccagggcgc gaggtcggcg cggcgcgtca cggtgtcgag
      361 tttgttggcg accagcagga cgggcttggc cgggtcgaca agggcgagga ccgccgcgtc
      421 gtccgggccg aaccggccgg cctcgacgac gagcaggacg acgtcgacgt cggaaagcgt
      481 gccggtgacg gcgcggttga gcgagcggtt gagggcggcg acgtggcgcg tctggaagcc
      541 gggcgtatcg acgaacacga actgcgcctc gccgcgcgtg cggatgccgg tgatgcggtg
      601 gcgcgtcgtc tgcgccttgt tcgaggtgat gctgatcttc tgcgcgacca gcgcattcag
      661 cagggtcgac ttgccgacgt tgggccggcc gacgatcgcg accaagccac agcgcatcag
      721 gagcggagcg ggcttcccgg ctcgtcgctg tcgcgcaggg cgtcgagcat ccggcgcgcg
      781 gcttcctgct cggcggcgcg tcgcgacttg ccctcgccgg tttcctggag gctcagcgcc
      841 ggcacggcgc actcgacctc gaaggtctgg gcgtgcgcct ggccgcgcgt ggcgatgatc
      901 cggtagctcg gcaccgggat gcgccgcgcc tgcagccatt cctgcagctc ggtcttggcg
      961 tccttggccc agctcgcgac ctcggtggtc tcaatcacct cgccgaacag gctgtgcacc
     1021 agcgtgcgcg cagcggtcag gccgccgtcg aggaaggttg cgccgatcag cgcctcgagc
     1081 gcgtcggcca ggatcgacga gcgcagcgcg ccgccgccgc gcgcttcgcc ttcgcccagg
     1141 cgaagcgatt cgggcaggcc gagctggagc gcggcacggt agaggctgtc ctcgcgaacg
     1201 aggtgggcgc gcacccgcgt caggtcgcct tcgtcggagt cgccgaggcg atcgtagagg
     1261 aggctcgaga cgaccaggct caggacggcg tcgccgagaa actcgaggcg ctcgttgtgg
     1321 tcggctccgt agctgcgatg cgtgagcgcc agctccatca gcgccggatc ggcaaaccgg
     1381 tggccgatgc gctgctgcaa tgcgtcgagg ctggaatcca tgcgtgacaa cggctccgtt
     1441 cgatgggcgg gccgcgagac tagttcgagc ggccctcgaa cttgatgaga aggaagactg
     1501 gcttcacaag ttccacttcc ttgtcgtacg cgaacgagac cacgactttt tcgttttcct
     1561 tggtgaccac caggtccttg ccggtgatcg agacgatcga gtattcgatg tccttctggc
     1621 gctcgaacgc ggcgcggatg tcggggacgg tcgagccctc ggtcgcgatc ttggcgatcg
     1681 tgcgcttgat cgtgaagtac tcgttcagcg ccggcagtac ccgcatgccg atcagggcca
     1741 ggaagccgac gatcacggcc cagaacagca ggccgaacag ggtgacgcca cgctggcggc
     1801 tggctttgtc gacttgaccg atcatccgcc ctcctcgtcc tttgcccggc agccgatgcc
     1861 gccta
//
LOCUS       DASVHM010000824         3960 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1213873, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000824 DASVHM010000000
VERSION     DASVHM010000824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3960
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1213873"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..86)
                     /locus_tag="VF308_15080"
     CDS             complement(<1..86)
                     /locus_tag="VF308_15080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015602326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HEX7438028.1"
                     /translation="MRYWLMKSEPGECSIDDLARAPSQTVPWV"
     gene            complement(145..325)
                     /gene="ssrS"
                     /locus_tag="VF308_15085"
     ncRNA           complement(145..325)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="VF308_15085"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(355..660)
                     /locus_tag="VF308_15090"
     CDS             complement(355..660)
                     /locus_tag="VF308_15090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HEX7438029.1"
                     /translation="MRQMEVTIMGQSYILGCPEGGELALLEAVGQVDREMSAIRDGGK
                     VKARERIAVLAALNLAYALTERPAAAVPAGASDASAIDIDSLVKRLDSALRDDGQLL"
     gene            complement(657..902)
                     /locus_tag="VF308_15095"
     CDS             complement(657..902)
                     /locus_tag="VF308_15095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007829722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapB"
                     /protein_id="HEX7438030.1"
                     /translation="MSKIEELADRVERLLLRHVELKRTNSLLQEQLTAVTHERDNLRS
                     RLNAARNRIDVLLERLPNEPAKGVDGAQPAEAARSAP"
     regulatory      1029..1270
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            1339..3258
                     /locus_tag="VF308_15100"
     CDS             1339..3258
                     /locus_tag="VF308_15100"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX7438031.1"
                     /translation="MFIRWFPVPRTWFKAQATPSPFVAIVFLVGASAMCVAQAQPQSL
                     PPVVITGNREPTPLDRIVGDVVVIDAERIRASNADSLEDLLRREGGIQLSRNGGPGQS
                     AAILLRGSGASSTLVLVDGVRIGSATLGQVDFAAIGLAQIERVEILRGPGSSLYGADA
                     VGGVVQIITRHGSGAPRVTAHAALGELDSRSADLSVGGSDGRVDYAASLARESSRGIS
                     SIKPGDLFGLYNPDRDGFARTNLQLRGGFTFTPGQRLGLGVVESRLLAQYDGAEFLPP
                     GFNADASPDFRNRLLTRATSLDYRGVLAPNWTMTVQASGQSDDLHSGGTETSRFKTDR
                     QQLTWQNAWRPAEGQQWLGAIERLDESVQASPYSSSPRRHTTALVLGYTGAFGIYKVQ
                     ADVRHDRNSVYGRVSTGKLGLAADIRPGVTLRAVAGTAYRAPAFNDLYFPGYGVPTIG
                     PEHSHSLEAGVQWRSDEASAGATVYRNRVRDLIAFEADRSFCPADPSYDFGCARNVNR
                     ATLQGATLTAAHRLGAFAGRATFDVLDAKDDATGQRLPRRAADQESLGADWSGAAWTA
                     GVAFLRVGARPDAGAMLPAYQTVDLQARYRLTPHWQAEGRLLNAFDHRYEPQRDYQAL
                     GRQGWIGLRYDGVGL"
     gene            3277..>3960
                     /locus_tag="VF308_15105"
     CDS             3277..>3960
                     /locus_tag="VF308_15105"
                     /inference="COORDINATES: protein motif:HMM:NF013219.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HEX7438032.1"
                     /translation="MLRTLAVLLLLALVACAIGVAAGSSGWGLAAPEILWKIRVPRVL
                     AGFGAGAALALSGALMQLLTRNPLADPYVLGISGGASVGALLVLWLGSLGGAVLLPEW
                     GVALGAGAGALLAAALLFMLSWRLLGRAGFVATQESSVALLLVGVMIGTACSAFVSML
                     LVLASETQLRGMVFWLLGDLNGATQWGVAWLAWIVALALVWPTARQLDWLARGDAWAA
                     TLGVPVVRRR"
BASE COUNT          554 a         1369 c         1384 g          653 t
ORIGIN      
        1 acccacggga cggtctgtga aggagcgcgg gccaggtcgt cgatcgagca ctcgccgggc
       61 tcgctcttca tcagccaata gcgcatcgga gatggactcc cgcagacgga ggtggcgcgg
      121 atcggagaag gttccccgag aaaaggtgtc cgccgcgaac catgagccgc attcctgaac
      181 ccaggcagtt caggtgggcg aggtcagccc ggcttcgggt tcatctgacg cgagacgatc
      241 acaccagccg ggcgatgttc caagcccttg ctcgtaagag catcggttca aggaaatata
      301 aagctcacgc gaacgcgacg gacgaaaatc attctacgct tcggtcccgc gtcttcagag
      361 caattggccg tcgtcgcgaa gggctgaatc gagccgcttg accaggctgt cgatgtcgat
      421 cgcggacgcg tcggaagccc cggccggtac cgccgcggct ggccgttcgg tcagcgcgta
      481 ggcgaggttg agcgctgcca gcacggcgat gcgctcgcgc gccttgacct tgccgccatc
      541 gcggatcgcg ctcatttcgc gatcgacctg gccgaccgct tcgagcagcg cgagttcgcc
      601 gccttccggg cagccgagga tgtagctctg ccccatgatg gtcacttcca tctgcctcat
      661 ggcgcactcc gtgcggcttc ggcaggctgc gccccatcga ctcccttcgc gggctcgttg
      721 ggcaggcgct cgagcagcac gtcgatgcgg ttgcgcgccg cgttcaggcg cgagcgcagg
      781 ttgtcgcgtt catgggtaac cgcggtcagc tgctcctgca gcagcgaatt ggttcgcttc
      841 aactcgacat gtcgcaacag caatcgctca acccggtctg cgagctcttc gatcttggac
      901 atggcgccgc tcagtggtgt acctggaatt gtaggcgtcg cacctcggcg cggcgcccgc
      961 gagtccggcg gcgcgggcgg tgagcggcgc ggctgcgcgc ccggcgcgtg aagaaatcac
     1021 gctgcgctca ctacaatggc aacgttggtg cccgtgccgg cgctcagccg gcacagttaa
     1081 acgggaagca gaaggattga cgccgcctcg gccgattccg aaactgcgct gcccccgcaa
     1141 cggtacggcg gacgaagtcg cgaatgcggc ttcagccctt gcgcacacac cactgaaggc
     1201 gatggtcttc gggaaggtcg caggggtcgc tccgccagcc cggataccgg ccaacggggg
     1261 gcggagcgcg cgtcgcgccg ccgaacgcca tggcgcccgc ggggaaccgg gagcaggcac
     1321 ttcgccgttg gaacgctcat gttcattcga tggtttccgg tgccgcgcac ctggttcaaa
     1381 gcccaagcca cgcccagccc tttcgtcgcg atcgttttcc tggtcggcgc cagcgcgatg
     1441 tgcgtcgccc aggcccagcc gcaaagcctg cccccagtgg tgatcaccgg taaccgcgag
     1501 ccgacgccgc tcgatcggat tgttggcgac gtcgtcgtca tcgacgccga gcgcatccgc
     1561 gcgtcgaacg ccgactcgct cgaggacctg ctgcgtcgcg agggtggcat ccagctttcg
     1621 cgcaatggcg ggcccggcca gagcgccgcg atcctcctgc gcggcagcgg cgcgagcagc
     1681 acgctggtgc tggttgatgg cgtgcgcatc ggctcggcca cgctcgggca agtcgacttc
     1741 gctgccatcg gcctggccca gatcgaacgc gtcgagatcc tgcgcgggcc gggctcgagt
     1801 ctttacggcg ccgacgcggt cggcggcgtg gtccagatca tcacgcggca cggctcgggc
     1861 gcgccgcgcg tgaccgcaca cgcggcgctc ggcgagctcg actcacgcag cgccgacctg
     1921 tcggtcggcg gctcggacgg ccgcgtcgac tacgcggcca gccttgcgcg cgaatcgagc
     1981 cgcggcatct cgtcgatcaa gcctggcgat ttgttcgggc tctacaaccc cgatcgcgac
     2041 ggctttgcgc gcacgaacct gcagcttcgc ggcggcttca ccttcacgcc ggggcagcgg
     2101 ctcggcctgg gcgtggtcga gagccgcctg ctcgcacagt acgacggcgc cgagttcctg
     2161 ccgcccggct tcaatgccga tgcgtctccc gacttccgca atcgtctgct gacgcgcgcg
     2221 acctcgctcg actaccgcgg cgtgctcgcg ccgaactgga ccatgaccgt gcaggcgtcg
     2281 ggccaatcgg acgacctgca cagcggcggc accgagacga gtcgcttcaa gaccgatcgg
     2341 cagcagctga cgtggcagaa cgcatggcgc cccgcggaag gacagcaatg gctcggcgcg
     2401 atcgagcggc tcgacgaatc ggtccaggcg agcccgtatt cgagttcgcc gcggcgccac
     2461 accacggcgc tcgtgctcgg ctacaccggt gcgttcggca tctacaaggt gcaagccgac
     2521 gtgcgccacg atcgcaactc ggtgtacggc cgtgtcagca cgggcaagct cgggctggcg
     2581 gccgacatcc gaccgggcgt gaccctgcgc gccgtcgcgg gcaccgcgta tcgggcgccg
     2641 gccttcaacg atctgtactt ccccggctat ggcgtcccga ccatcgggcc cgaacattcg
     2701 cacagcctcg aggcgggcgt gcagtggcgg tcggacgagg cgtcggcggg cgcgaccgtg
     2761 tatcgaaatc gggtgcgcga cctgatcgcg ttcgaagccg atcgcagttt ctgtcctgcg
     2821 gatccgtcgt acgacttcgg ctgcgcccgc aacgtcaacc gcgcgactct gcagggcgcg
     2881 accttgacgg cggcccatcg gctcggcgcc ttcgccgggc gggcgacctt cgacgtcctc
     2941 gacgcgaagg acgatgcgac cgggcagcgg ctgccgcggc gtgccgcgga ccaggaaagt
     3001 ctcggcgccg attggtcggg cgctgcgtgg accgccggcg ttgcgttcct gcgcgtgggc
     3061 gcccggcccg acgccggcgc catgctgccg gcttaccaga ccgtcgacct gcaagcgcgc
     3121 taccgcctga cgccgcattg gcaggccgaa ggccggctgc tgaacgcctt cgatcatcgc
     3181 tacgaaccgc agcgcgacta ccaggcgctg ggacggcagg gctggatcgg gctgcgctac
     3241 gacggcgtgg gcctctgacc gggtcggaga cagctgatgc tgcgaaccct tgcggtgctg
     3301 ctgctgctgg cgctcgtggc ctgcgcaatc ggcgtcgccg ccggctcctc gggctggggt
     3361 ctggccgcgc ccgagatcct ctggaagatc cgcgtgccgc gggtgctcgc gggcttcggt
     3421 gccggcgcgg cgctggcgct ctcgggcgcc ctgatgcagt tgctgacgcg caatcccctg
     3481 gccgacccgt acgtgctcgg catttccggc ggtgcgtcgg tcggcgcctt gctggtgctg
     3541 tggctcggca gcttgggcgg cgcggtgctc ctgcccgaat ggggcgttgc gctgggggcc
     3601 ggggccggcg cgctcctcgc ggcggccctg ctcttcatgc tgtcctggcg cctgctcggc
     3661 cgcgccggct tcgtggcgac acaggagtcg tcggtcgcgc tgctgctcgt cggcgtgatg
     3721 atcgggaccg cgtgctccgc cttcgtctcg atgctgctcg tgttggcgtc cgagacgcaa
     3781 ctgcgcggca tggtgttctg gctgctcggc gatctgaacg gggcgacgca atggggcgtc
     3841 gcctggctcg cctggatcgt cgcgctcgcg ctggtctggc cgaccgcgcg ccagctcgac
     3901 tggctcgccc gcggcgatgc ctgggccgcg acgctcggcg tgccggtggt tcgacgccgc
//
LOCUS       DASVHM010000825         8431 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1001056, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000825 DASVHM010000000
VERSION     DASVHM010000825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 8431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8431
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1001056"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..234)
                     /locus_tag="VF308_15110"
     CDS             complement(<1..234)
                     /locus_tag="VF308_15110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019139634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HEX7438033.1"
                     /translation="MDWLDQVKWDANGLVPAIAQQVGSNDVLMFAFMNREALARTAAS
                     GEAVYWSRSRLRLWKKGEESGHIQKVHELRLDCD"
     gene            complement(255..692)
                     /locus_tag="VF308_15115"
     CDS             complement(255..692)
                     /locus_tag="VF308_15115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX7438034.1"
                     /translation="MSANPGRTPVDVAVGVLIDREGRFLLSSRPSGKVYAGYWEFPGG
                     KLEAGESVEAALRRELHEELGITIGAVQPWKIELVDYAHACVRLHFCKVREWQGAFEM
                     REGQQMAWQTLPVEVAPVLPGTLPVLQWFAAERGFAGPTHRGA"
     gene            complement(689..1567)
                     /locus_tag="VF308_15120"
     CDS             complement(689..1567)
                     /locus_tag="VF308_15120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX7438035.1"
                     /translation="MSVPADALLRLIDRAEALLARLEGVLPHLPAAPDWAASIAFRYR
                     KRGGSGVIEPVRHVAPIRLGALVEVDAQKERLVRNTEQFVAGFGANNVLLTGARGTGK
                     SSLIKACLNEFAPRGLRLIEVDKTDLVDLPDIVDLVAERPERFIMFCDDLSFDEGEPG
                     YKALKSILDGSVSQSSENVLIYATSNRRHLLPEYMEENLTYRHTEDGEVHPGEGVEEK
                     ISLSERFGLWVSFYPFSQDEYLAIVAQWLRGFGVDAAAIAAARQESLVWALERGSRSG
                     RVAFQFAKDYAGRHHA"
     gene            complement(1635..1976)
                     /locus_tag="VF308_15125"
     CDS             complement(1635..1976)
                     /locus_tag="VF308_15125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438036.1"
                     /translation="MRGNHDDRAGDPPPGLWIETVDEPFGFGGLALCHHPTPPRAGYV
                     LGGHLHPCLNLGGRAFDRLRLPCFWFGAGVGVLRAFGAFTGMHPIRPQPGDRVFAIAD
                     EQVSEVRLRHA"
     gene            complement(2065..3289)
                     /locus_tag="VF308_15130"
                     /pseudo
     CDS             complement(2065..3289)
                     /locus_tag="VF308_15130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013105979.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
     gene            complement(3377..4072)
                     /gene="slmA"
                     /locus_tag="VF308_15135"
     CDS             complement(3377..4072)
                     /gene="slmA"
                     /locus_tag="VF308_15135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0010974 - negative regulation of division
                     septum assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HEX7438037.1"
                     /translation="MILPAESPETEASPEDVVGEGADAQVPAALSPPVRKRPKPGERR
                     VQILHTLAGMLEQPGADRVTTAALAAKLAVSEAALYRHFASKAQMFEGLIEFIEQSVF
                     TLINQIGERETDARTQVQKVLAVVLQFGEKNPGMTRVMVGDALVFENERLVVRMNQFF
                     DRIESHLRQSLRAAAEAESSATPTVDANAQASVLTAFLVGRLQRFARSGFKRSPTEHL
                     DAAMRLLLRPGGP"
     gene            complement(4069..4806)
                     /locus_tag="VF308_15140"
     CDS             complement(4069..4806)
                     /locus_tag="VF308_15140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018913800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HEX7438038.1"
                     /translation="MTTTRVWLFDLDNTLHDASHAAFAPISAAMTDYIVEHIGLEAGA
                     ATVLRYEYWKRYGATLLGMVRHHEVRAAHFLEQTHRLPGLEARLRTSAHDRAALRRLA
                     GRKFILTNSPRAYALRVLRTLGLAASFDGVISIEDMAMFGHIRPKPDARMLRRVAARL
                     KVPPARCMLVEDTLEHQKAAHRIGMTTVWMQRYLGGRFRGGLGNAAQAATNRSLASPV
                     EVGVHACPKPAYVCAKIKSLQKLPRAR"
     gene            complement(4904..5824)
                     /gene="argB"
                     /locus_tag="VF308_15145"
     CDS             complement(4904..5824)
                     /gene="argB"
                     /locus_tag="VF308_15145"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEX7438039.1"
                     /translation="MTLDPAAAPAMPNLAHISPRDKAEILAQALPYIRKFHGKTIVIK
                     YGGNAMTDPALQQDFAEDVVLLKLVGMNPVVVHGGGPQIEDALAKLGKKGTFIQGMRV
                     TDDETMEVVEWVLAGQVQQDIVGLINVAGGKAVGLTGRDGGLIRARKLRMVDRDDPTK
                     EFDVGHVGEIESIDPSVVRALQEDQFIPVISPLGFGADNENYNINADVVAGKLAEVLK
                     AEKLMMLTNTPGVLDKSGKLLTDLSAREIDDLFADGTISGGMLPKISSALDAAKNGVN
                     TVHIIDGRVPHAMLLEVLTEQAYGTMIRSR"
     gene            6022..6420
                     /locus_tag="VF308_15150"
     CDS             6022..6420
                     /locus_tag="VF308_15150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013803928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7438040.1"
                     /translation="MNKVRTFIVEDSSMVRENLIAALYENAPIEVIGVAEDESGAIDW
                     LMGAGHACDLVIIDIFLRSGSGLGVLKAIRALPRATKRVVLSNHATPDVRIKCRELGA
                     DEVFDKSNELDQMLHYCNRIRVESVELKEP"
     gene            complement(6534..>8431)
                     /locus_tag="VF308_15155"
     CDS             complement(6534..>8431)
                     /locus_tag="VF308_15155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007873929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7438041.1"
                     /translation="PQGYRVGDVLDIFSKAAHAPKMNLFINAALLGFVPKSVKKGLKG
                     HVDHVYHLAAVYDLSADAESQVAVNIDGTRNVVEFAKAIDAGHLHHVSSIAAAGLYEG
                     VFREDMFDEADGLDHPYFMTKHESEKIVRKEAKLPWTVYRPALVVGDSRTGEMDKIDG
                     PYYFFKLIQKLRRVLPPWFPAIGIEGGRLNLVPVDFVVAALDHISHRKSELAGKCFHL
                     VDPQGYRVGDMLDIIGKAAHAPKMNLFVNAALLGFIPKTVKKGLMALAPVRRVKAAVL
                     KDLGLPEDMLTFVNFPTRYDCREALAALKGSGIECPRLEDYAWRLWDYWERHLDPALS
                     IDRSLRGTVGGKVVLVTGGSSGIGLAAACKFAEAGAITVICARDEGKLLEAKDLILAA
                     AGKNARVDTYSADIADDASCKGLVEWLTSTHGGADFLVNNAGRSIRRAIEASYERFHD
                     FERTMQLNYFGCLRITMGLLPGMVAKKKGHIVNISSIGVLTNAPRFSAYVASKAALDA
                     WTRCASSEYADMGITFTTINMPLVRTPMIAPTGLYNNVPTLAPEEAADMIAEACVDKP
                     VRIATRMGISGELLHALLPRIAQIVMNTAFRMFPDSAAAKGDKSGKPVLSAEAVAMQQ
                     MMRGIHF"
BASE COUNT         1341 a         2828 c         2819 g         1443 t
ORIGIN      
        1 gtcgcaatcg aggcgcagct cgtgcacctt ctggatgtgc ccgctttcct cgcccttctt
       61 ccacaggcgc aggcgcgaac ggctccagta caccgcttcg cccgaagccg ccgtgcgggc
      121 cagcgcttcg cggttcatga aggcgaacat cagcacgtcg ttgctgccga cctgctgggc
      181 gatcgcgggc accagcccgt tcgcgtccca tttcacctga tcgagccaat ccatggcacg
      241 cagtttagcg gcgctcatgc gccgcgatgg gtggggccgg caaagccgcg ttccgcggcg
      301 aaccactgca gcaccggcag cgtgccgggc agaaccgggg cgacctcgac cggcaaggtc
      361 tgccatgcca tctgctggcc ctcgcgcatt tcgaaggcgc cctgccattc acgcaccttg
      421 cagaaatgga ggcggacgca cgcgtgcgca tagtcgacca gctcgatctt ccagggttgc
      481 acggcgccga tcgtgattcc gagttcttcg tgcagttcgc ggcgcagcgc ggcctcgacc
      541 gactcgccgg cctcgagctt gccacccgga aactcccaat agcccgcgta caccttgccg
      601 gacgggcgcg aactcagcag gaaacggcct tcgcggtcga tcagcacgcc gaccgccacg
      661 tcgaccggcg tgcgcccggg attggcgctc aagcgtgatg ccttccggcg taatccttgg
      721 cgaattggaa cgcgacccgc cccgagcgcg agccgcgctc gagcgcccac accagcgact
      781 cctggcgcgc cgcggcgatg gccgccgcgt cgacgccgaa gccgcgcagc cattgcgcga
      841 cgatcgccag gtattcgtcc tggctgaacg gatagaagct cacccacaag ccgaaacgct
      901 cgctgagcga gatcttctcc tcgacgccct cgcccgggtg cacctcgccg tcctcggtgt
      961 gccggtaggt gaggttttcc tccatgtatt cgggcagcag gtggcgccgg ttgctggtcg
     1021 cgtagatcag cacgttctcc gacgactgcg agaccgagcc gtcgaggatc gacttcaacg
     1081 ccttgtagcc gggctcgccc tcgtcgaagc tcaggtcgtc gcagaacatg atgaagcgtt
     1141 ccggccgctc ggcgacgagg tcgacgatgt cgggcaggtc gacgaggtca gtcttgtcga
     1201 cttcgatcag gcgcaggccg cgcggcgcga actcgttcag gcaggccttg atcagcgaac
     1261 tcttgcctgt gccgcgcgcg ccggtcagca ggacattgtt cgcgccgaaa ccggcgacga
     1321 actgctccgt gttgcgcacc agccgctcct tctgggcgtc gacctcgacc agcgccccga
     1381 ggcggatcgg cgcgacgtgg cgcaccggtt cgatcacgcc cgagccgccg cgcttgcgat
     1441 atcgaaaggc gatcgaggca gcccagtccg gcgcggcggg caggtgcggc agcacaccct
     1501 cgagccgcgc caggagcgcc tcggcacgat cgatcagacg cagcagcgca tcggcgggaa
     1561 cggacatgga gctctgggtc gtcgcgcgac gagatgaaag atgcagttta gcggcggccc
     1621 tgccccggcc cgcttcaggc gtgccgcaag cggacctccg aaacctgctc gtcggcgatc
     1681 gcgaagacgc ggtcgcccgg ctggggccgg atcgggtgca tgccggtgaa ggcgccgaat
     1741 gcgcgcagca cgccgacccc ggcgccgaac cagaagcacg gcagccgcag acggtcgaag
     1801 gcgcggccgc ccaggttcag gcacggatgc aggtggccgc ccagcacata gccggcgcgc
     1861 ggcggcgtgg ggtgatggca aagcgccagg ccgccgaagc cgaacggctc gtcgaccgtc
     1921 tcgatccaca ggcccggcgg cgggtcgccg gcccggtcgt catggttgcc gcgcaccagc
     1981 gtcaggttga ccgccgcgtg cgcctcgcgc cagcgcgaga gcgccgccag cgtcgccggt
     2041 gcgtgcgacc gcgccgagtg caggaagcgg ctccaccgtc tgcttgcgta gtccatacag
     2101 ggctcgccct ttcttcgtcc ccagccgatg ggccatcttg gccaccggat cgtcagcttc
     2161 gggcgctggc gcgtccgggg cgaagcgctc gagcacccga aggtggtgcg attcacgctt
     2221 catggccagc atcggctcga ttgcctgtgc ctcacaggcg ttgacgttgg ctgcactgaa
     2281 gtaaccggtg tcggccaaca gcacctcgac ctgcccaagg gccttcggaa gggcctgaac
     2341 cttatccagt attggcgcaa tttcgcgctt gtcgttgggc gcctgcgaga cgtgcgcgat
     2401 caccaccagc atcgtctcgg catcgaccgc ggcctgggcg ttgtagcttt gctcgaagcc
     2461 cccgcgcgag gtgggcatga tgcgtgactc ttcgtccgtg agattgacct ggtcgctgcc
     2521 ctggggctcg ctcgacggag gctgcgggtc tggcccacgt ggcttcttgc ccgcctggcg
     2581 ttgggcgtcg cgcttggcgc gcttggcctc gtactcctgc tgctcgacgg cgtgacgctc
     2641 gcgcgctcgc tcctcgatct tggtcttggc ttgcgctatg gcgctcaggc gcttgtcgcg
     2701 ccgcgcgatc tccgccggaa cgtccagccc gtcgttgacc ggacgactgt cgctttgctc
     2761 ggccagcttc aaaagcagtt gcacttcctt gcgcaaccgc gcctctattc tgttggcgtg
     2821 ctcccaggac ggcgccctgt gtttgctggc attggccaca atcttcgttc cgtccagcga
     2881 gatgttgccc agcttgaggc acttcatctc gcgcgccagc atcagcacct gtacgaacag
     2941 cgcctcgatc tgcggcaaaa agcgccaccg gaaggtggcg atgctgtcgt ggtcgggctg
     3001 ggtgttggcg gcaatgaagc gaaaggccac cgagtcgtgg caggcccgct cgatcttgcg
     3061 gctcgagtgc accccggtgg cgtagccgta gaccaacaag cccagcaaca gcgccgggtg
     3121 ggtacgcatc gctgccgcgt cccgcctact gccggaccag ctcactcagg tccaactgat
     3181 cgatcacctc cacgacaaaa cgggccagat gatcctgcgg caaccactca tcgaccgacg
     3241 gcggcagcag ataggcggtg tctcgatcta cagcaatgaa tcggctcatg cggtgggtgt
     3301 ctgtttaaac tggcgcaatt gtccagaccg ccgcccgccg ctcagggtag gcgggaaagc
     3361 ccgacgggct cctagactag gggccgcccg gcctgaggag caggcgcatc gcggcgtcga
     3421 ggtgctcggt cggactgcgc ttgaagccgg agcgcgcgaa gcgctgcagc cggccgacca
     3481 ggaatgcggt cagcaccgag gcctgagcgt tcgcgtcgac ggtcggcgtc gccgatgact
     3541 cggcctccgc ggccgcgcgc aagctctggc gcaggtgcga ctcgatgcgg tcgaagaact
     3601 ggttcatgcg gacgacgagg cgctcgtttt cgaacaccag cgcgtcgccg accatcacgc
     3661 gcgtcatgcc cgggttcttt tcgccgaact ggagcacgac cgcgagcacc ttctgcacct
     3721 gggtgcgggc atccgtctcg cgctcgccga tctggttgat caacgtgaac acgctctgtt
     3781 cgatgaactc gatcaggcct tcgaacatct gcgccttgct ggcgaagtgc cggtatagcg
     3841 cggcctccga gaccgcgagc ttcgcggcga gcgccgccgt ggtgacgcga tcggcccccg
     3901 gctgctcgag catgccggcg agcgtgtgca ggatctgtac gcgccgctcg cccggcttcg
     3961 ggcgcttgcg cactggcggc gacagtgccg cggggacctg cgcgtcggcg ccttcgccaa
     4021 cgacgtcttc ggggctggct tcggtctcgg gcgattcggc gggaaggatc atcgagcgcg
     4081 cggcagcttt tgaagcgact tgattttggc acacacgtaa gcgggcttcg ggcaggcgtg
     4141 aacgccaact tcgaccgggc tcgcgaggct ccggttcgtt gccgcttgcg cggcgttccc
     4201 gaggccgccg cgaaagcggc caccgagata tcgctgcatc cacaccgtcg tcatgccgat
     4261 gcggtgtgcc gccttctgat gctcaagcgt gtcctcgacg agcatgcagc gcgccggcgg
     4321 gaccttgaga cgtgccgcga cccgccgcaa catccgcgcg tcgggcttgg gccggatgtg
     4381 gccgaacatc gccatgtctt cgatgctgat gacgccgtcg aagctcgccg caagcccgag
     4441 cgtgcgcagc acgcgcagcg cgtaggcgcg cggcgagttg gtcaggatga acttgcgccc
     4501 cgcgagacgg cgcagcgccg cccggtcgtg cgcgctcgtg cgcaggcgcg cctcgaggcc
     4561 gggcagccgg tgcgtctgtt ccaggaagtg cgccgccctg acctcgtggt ggcgcaccat
     4621 gccgagcagc gtcgcgccgt agcgcttcca gtactcgtag cgcaagaccg tcgccgcgcc
     4681 tgcctcgagg ccgatgtgct cgacgatgta gtcggtcatc gccgcgctga tcggcgcgaa
     4741 agccgcgtga ctcgcgtcgt gcagcgtgtt gtccaggtcg aagagccaga ccctggtggt
     4801 cgtcactgga tgcggccggc ccgccgccga gccgcctcaa ggcgggccgc gccccctcgg
     4861 ggggcagcgc agcgacgaag tcgcaagcgt gggggctcca tgactagcgg gagcgaatca
     4921 tcgtgccgta ggcctgctcg gtcaggacct cgagcagcat cgcgtgcggc acgcggccat
     4981 cgatgatgtg caccgtgttg acgccgttct tcgcggcgtc gagcgcggac gatatcttcg
     5041 gcagcatgcc gccggagatc gtgccgtcgg caaagagatc atcgatctcg cgcgcgctca
     5101 ggtcggtgag gagcttgccg gacttgtcga gcacgccggg cgtgttggtg agcatcatca
     5161 gcttctcggc cttgagcacc tcggcgagct tgccggcgac gacatcggcg ttgatgttgt
     5221 agttctcgtt gtcggcgccg aagccgagcg gcgagatgac cggaatgaac tggtcttcct
     5281 ggagggcgcg caccacgctc gggtcgatcg attcgatctc gccgacgtgt ccgacatcga
     5341 attccttggt cggatcgtcg cggtcgacca tgcgcagctt tctcgcccgg atcagcccgc
     5401 cgtcacgccc ggtgagcccg accgccttgc cgcccgccac gttgatcagg ccgacgatgt
     5461 cctgctgcac ctggccggcg agcacccatt cgacgacctc catcgtttcg tcgtcggtca
     5521 cccgcatgcc ctggatgaag gtgcccttct tgccgagctt cgcgagggcg tcctcgatct
     5581 gcggaccgcc gccatgcacc accaccgggt tcataccgac cagcttgagc agcaccacgt
     5641 cctcggcgaa atcctgctgc agcgccgggt cggtcatggc gttgccgccg tacttgatga
     5701 cgatcgtctt gccgtggaac ttgcggatgt agggcagcgc ctgggccagg atctccgcct
     5761 tgtcgcgcgg cgagatgtgg gccaggttag gcatggcggg tgcggcggca gggtcgaggg
     5821 tcatggcatc gatgcagagg atcgcgaggc gattgaaatt gtaggggcgg gccggcctcg
     5881 ccccggcggt gtgggcgccg tcttacccgc gccacacgca tggcccgacg gcgcggcaaa
     5941 gacagagcct acctgcttcc cgaggcccgg catcgagaat gaatcggagc tctcgatggg
     6001 ctcgccccat gaccgctttt catgaacaag gtaaggacat tcatcgtcga agacagttca
     6061 atggtgcgcg agaacctgat tgccgcgctt tacgagaacg cgccaatcga ggtgatcggc
     6121 gtcgccgagg acgaatccgg cgcgatcgac tggctgatgg gcgcaggcca cgcctgcgat
     6181 ctcgtcatca tcgacatctt tctgcgctcc gggagcggcc tcggcgtgct gaaggcgatc
     6241 cgggccctcc cgcgggcgac gaaacgagtc gtcctcagca accatgccac gcccgacgtc
     6301 cgcatcaagt gccgcgaact cggcgccgac gaggtgttcg acaagtcgaa cgaactcgac
     6361 cagatgctcc actactgcaa ccgcatccgc gtcgaatcgg tcgagctcaa agagccttga
     6421 cctcatcgcc gccacaagcg acggcgcagc cgagccgcgg aagttcacgg accgaaggtt
     6481 cagtcgaacg ccgcgcaacc cggcggacgc gcgaagccgt gtccgccgcc gggtcagaaa
     6541 tggatgccgc gcatcatctg ctgcatggcc actgcctccg ccgacagcac cggcttgccg
     6601 ctcttgtcgc ccttggcggc ggcgctgtcg gggaacatgc gaaaggccgt gttcatgacg
     6661 atctgggcaa tccgcggcag cagcgcatgc agcagttccc cgctgatccc catgcgcgtc
     6721 gcgatgcgca cgggcttgtc gacgcaggct tcggcgatca tgtccgccgc ttcctcgggc
     6781 gcgagcgtcg gcacgttgtt gtagaggccg gtcggcgcga tcatcggcgt gcgcaccagc
     6841 ggcatgttga tggtcgtgaa cgtgatgccc atgtcggcat attcgctcga ggcgcagcgg
     6901 gtccaggcat cgagcgcggc cttgctcgcc acataggccg agaagcgcgg cgcgttggtc
     6961 agcacgccga tcgagctgat gttgacgatg tggcccttct tcttcgcgac catgccgggc
     7021 aagaggccca tggtgatgcg caggcagccg aagtagttga gctgcatcgt gcgctcgaag
     7081 tcgtggaagc gctcgtagct cgcctcgatc gcgcggcgga tcgagcggcc ggcgttgtta
     7141 acgaggaagt cggcgccgcc gtgcgtgctg gtgagccact cgaccaggcc cttgcagctg
     7201 gcgtcgtcgg cgatatcggc cgaataagta tcgacccggg cattcttgcc ggccgcggcc
     7261 aggatcaggt ccttcgcctc cagcagcttg ccctcgtcgc gggcgcagat caccgtgatc
     7321 gcgccggcct cggcgaactt gcaggccgcc gccaggccga tgcccgaaga cccgccggtg
     7381 acgaggacga ctttgccacc gaccgtgccg cgcagcgacc ggtcgatcga gagggccggg
     7441 tcgagatggc gttcccagta gtcccagaga cgccaggcat agtcttcgag ccgcgggcac
     7501 tcgatgcccg agcccttcag cgcggcgagc gcctcgcggc agtcgtagcg ggtcggaaaa
     7561 ttgacgaagg tcagcatgtc ctccggcagc ccgaggtcct tcagcaccgc ggccttgacg
     7621 cgccgcaccg gggccagcgc catcaggccc ttcttgacgg tcttcggaat aaagcccagc
     7681 agcgcggcgt tgacgaacag gttcatcttc ggcgcatggg ccgccttgcc gatgatgtcg
     7741 agcatgtcgc cgacccggta gccctgcggg tcgacgagat ggaagcactt gccggcgagc
     7801 tcgctcttgc ggtggctgat gtggtcgagc gcggcgacga cgaaatcgac cggcaccaga
     7861 ttgagcctgc cgccctcgat gccgatcgcc ggaaaccacg gcggaaggac tcggcgcagc
     7921 ttctggatca gcttgaaaaa gtagtatggc ccgtcgatct tgtccatctc gccggtgcgc
     7981 gaatcgccga ccacgagtgc cgggcggtac acggtccacg gcagcttggc ctccttgcgc
     8041 acgatcttct cgctctcgtg cttggtcatg aagtacggat ggtcgaggcc gtccgcttca
     8101 tcgaacatgt cctcgcggaa cacgccttcg tagagcccgg ccgcggcgat cgagctgacg
     8161 tggtgcagat ggccggcatc gatggccttg gcgaactcga ccacattgcg cgtgccgtcg
     8221 atgttgaccg cgacttggga ttccgcatcg gccgagaggt cgtagacggc agcgaggtgg
     8281 tagacatggt cgacgtgccc cttcagcccc ttcttcacgc tcttcgggac gaagcccagc
     8341 agcgccgcat tgatgaacag gttcatcttc ggcgcatgag cggccttgct gaagatgtcg
     8401 agcacgtcgc cgacgcggta gccctgcggg t
//
LOCUS       DASVHM010000826         5779 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1001986, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000826 DASVHM010000000
VERSION     DASVHM010000826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5779
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1001986"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..1356
                     /locus_tag="VF308_15160"
     CDS             199..1356
                     /locus_tag="VF308_15160"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEX7438042.1"
                     /translation="MGVTMPEMAVGNCAGAKVAPSFGRARRAAAQREALADGADFVVG
                     LLVPINGSAGIWGPSSIACAQLAQAEINADGGLLDRRLRLCVIDSSDEATEVGSVTAG
                     LMNAGAIDAIVGMHTSQVRQRVLKDVARQIPYVYTPLYEGGERTPGVFALGETPGQQL
                     RPAIEYLASRYAARRWMFVGNDYVWPRVSHRLAARYVGEQGGEVVADRYLPFGTEDYS
                     ELLDEIARLKPHAILLSLVGQDAVQFNRAFGRCGLSRDMFRLSCAIEENGLLAIGADN
                     TEGLFVSSGYFASLDNDANMAFKERYYNHFGQRAPTLNALGQSTYEGVHFMAALARRA
                     ADENAQLLGNLAAPLAFRSVRGISYSGNEHCAHPTYLAEAGGHFFQPPVAL"
     gene            1491..3137
                     /locus_tag="VF308_15165"
     CDS             1491..3137
                     /locus_tag="VF308_15165"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin domain-containing protein"
                     /protein_id="HEX7438043.1"
                     /translation="MTLLAWLFGLIVLIVAVAVAVAFLNRFYRKTSRDVALIRTGFGG
                     QKIVLTGGTLALPFLHKIDEINMRTMRIEVSRSGAKSLITEDRMRVDVELEFYLRVQP
                     TVDGVATAAQAIGSKSLSPDGVRNLLEGRFIDAIQAIGATFTMDSLHDKRAEFVRMIR
                     ESVRENLAHSGLQLESVSLTRMDQAAFAALDDNNAFNAVGLRKLAEIIATSKKKRAEI
                     EADADVSVRQTQLEAIKQRLSLSRQEEEAQIGQRLEIEKLKAASDADTARAREQSTVA
                     SENARIEREQSTRIAEIQKARELRKLEIEAQLSSEVRKIDSSITMATKHAEEAKAQAK
                     AELARTEIVLAQEQLQTERERAVAERSREIALKREQERGAVETSKAESETAVLLMTAK
                     AEASATTTRAEAQRIRLTAESEGARAMIDAENSRTTELMHLQLEQHRLDRLPEIIAQM
                     MKPAEKIDSIRIHQVTGFGGSSSGYGNGVGGPGGDGAQRAPVTQVMDSILGMALQLPA
                     MKSIGDSIGVDLSAAVGGPKGGGPAPGAPDSASDKSRPKG"
     gene            3196..4419
                     /locus_tag="VF308_15170"
     CDS             3196..4419
                     /locus_tag="VF308_15170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006221600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7438044.1"
                     /translation="MSFSRRHFIASTSGAAAGIALPFHVFGQGATIKLGSVLDNSGNL
                     DAYGKPMVQATTMAAEEINAAGGLLGRKIQVVQYDTQSDIALYTKYAQQLARDDKVDV
                     VHGGITSASREAIRQTFRRANVLYFYNVLYEGGVCDRNCIVTGTTPAQVMEPIVEIAS
                     KQWGKKVYVLAADYNYGQITAKWLAHYAKLRGGTVLQTDFFPLDVADFGSTIAKIQAA
                     KPEYVCAALVGGAHLSFFRQWAASGMNKKIPLCSTTFGVGNEHLALSPAEGDGILIAG
                     NYSQEDPSPANKDFLARWAKRFGDTKIVHEIAVSQYQGIKLWAEAVKKAGSLDREKLL
                     KVIESGISVEGPGGLVKIDPATHHASLDIKVMEVKNQKLTIKQTFKQRPPSDTAASCN
                     LAKNPNENKQFEVTI"
     gene            4454..5320
                     /locus_tag="VF308_15175"
     CDS             4454..5320
                     /locus_tag="VF308_15175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7438045.1"
                     /translation="MDYAAVVFLEILYMIAFLALTSAGLAVVFGMMRVINLAHGEFVM
                     IGGYVTIFANRAGVDIWFAMLVLAPLVVGVIGLIVERVVIRHLYGRMIDTMLATWGLS
                     LLMVGLVTLIFGNTAVSVTAPIQSYQAGAYQMGGYNLFIIAVAILLMLVLWLVLRYTR
                     IGLIARGAMQNADVASSLGYNPQKIYMWTFTAGAALSGLAGGVMAPLTGLLPSSGSLY
                     IAKSFITVITGGAAIISGTLASSVIFGTINQIVSFGSTPVIGEIAMLALAIVLLRLMP
                     QGITGRFFKNST"
     gene            5317..>5779
                     /locus_tag="VF308_15180"
     CDS             5317..>5779
                     /locus_tag="VF308_15180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006221602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7438046.1"
                     /translation="MTGGPTFGVGRIRWGWFIVGCVVVLLLPAVTGTNTPALLLIWAL
                     FALSLGLMWGFAGILSFGHAAYFGLGAYTYAIAAMTVGESTGPLVLAIVLPAAAAAVI
                     GAMMFYGRISDVYMGVITLVVTLILFKFMNATAGDAYRIGTVRLGGFNGIPA"
BASE COUNT          971 a         2018 c         1896 g          894 t
ORIGIN      
        1 agcacccgcc agtggtccga ggtgatgccc tccaggccga tcgaggtgct caggcggtcg
       61 gccacgacgc gactggcacg ctcgagcagc aggccgagat gggggtcgaa tcgattcatg
      121 ctgtgatatt gtagaagtcg ctttccggag aaagcaaaac gaggggatgg caaagccccc
      181 gacgccccgc gcgggcccat gggagtgacg atgcccgaga tggcggtcgg caattgcgcc
      241 ggcgcgaagg tcgcgccatc gttcggccgc gctcgccgcg ccgccgccca gcgcgaagcg
      301 ctcgccgacg gcgccgattt cgtcgtcggc ctgctcgttc cgatcaacgg ctcggcgggc
      361 atctggggcc cttcgtcgat cgcctgcgcc cagctcgccc aggccgagat caacgccgac
      421 ggcggcctgc tcgaccggcg cctgcgcctg tgcgtgatcg actcgtccga cgaggcgacc
      481 gaggtcggca gcgtcaccgc cggcctcatg aacgccggcg cgatcgacgc gatcgtcggc
      541 atgcacacga gccaggtgcg ccagcgcgtc ctcaaggacg tcgcgcgcca gatcccgtac
      601 gtctacacgc cgctctacga gggcggcgag cgcacgcccg gcgtgttcgc gctcggcgag
      661 acgccggggc agcaactgcg gccggcgatc gagtacctcg ccagccgcta cgcggcgcga
      721 cgctggatgt tcgtcggcaa cgactacgtc tggccgcgcg tctcgcaccg gctcgccgcg
      781 cgctacgtgg gcgagcaggg cggcgaggtc gtcgccgacc gctacctgcc gttcggcacc
      841 gaagactatt ccgagctgct cgacgagatc gcgcgcctca agccgcacgc gatcctgctc
      901 tcgctcgtcg gccaggacgc ggtgcagttc aaccgtgcct tcggccgctg cggcctgtcg
      961 cgcgacatgt tccgcctctc gtgcgcgatc gaggagaacg gcctgctcgc gatcggcgcc
     1021 gacaacaccg agggcctgtt cgtctcgtcg ggctacttcg cctcgctcga caacgacgcc
     1081 aacatggcgt tcaaggagcg ttactacaac cacttcgggc agcgcgcacc gacgctgaac
     1141 gcgctcggcc agtcgaccta cgagggggtc cacttcatgg ccgcgctcgc acgccgcgcc
     1201 gccgacgaga acgcgcagct gctcggcaac ctggcggcgc cgctcgcctt ccgctcggtg
     1261 cgcggcatct cgtattccgg caacgagcac tgcgcccacc cgacctacct tgccgaggcc
     1321 ggcggccact tcttccagcc tccggttgcg ttgtagcgat cgcgtgcccc ggggcggtcc
     1381 ggccgaagtc ggtgcggaac ttgcaaagcc cctgctatag tttccacgga aagtaacgcc
     1441 ttggtgcgtc ggccgcaggc cgtcgtctcg ccgtcggagg aggggatccc atgaccttgc
     1501 tggcctggct cttcggcctg atcgtcctga tcgtcgcggt cgccgtcgcg gtcgccttcc
     1561 tgaaccgctt ctaccgcaag acctcgcgcg acgtcgccct catccgcacc ggcttcggcg
     1621 gccagaaaat cgtcctcacc ggcggcacgc tggcgctgcc gttcctgcac aagatcgacg
     1681 agatcaacat gcggacgatg cggatcgagg tcagccggtc gggcgccaag tcgctgatca
     1741 ccgaggaccg gatgcgcgtc gacgtcgagc tcgagttcta cctgcgcgtg cagccaaccg
     1801 tcgacggcgt cgccaccgcg gcgcaggcga tcggctcgaa gtcgctcagc cccgacggcg
     1861 tccgcaacct gctcgaaggc cgcttcatcg acgcgatcca ggcgatcggc gcgaccttca
     1921 cgatggattc cttgcacgac aagcgcgccg agttcgttcg catgatccgc gaatcggtgc
     1981 gcgagaacct cgcccacagc ggcctgcagc tcgaatcggt gtcgctgacg cggatggacc
     2041 aggccgcgtt cgccgccctc gacgacaaca acgccttcaa cgcggtcggc ctgcgcaagc
     2101 tcgccgagat catcgcgacg agcaagaaga agcgcgccga gatcgaggcc gacgccgacg
     2161 tctcggtgcg gcagactcag ctcgaggcga tcaagcagcg cctcagcctc tcgcgccagg
     2221 aggaggaagc gcagatcggc cagcgcctcg agatcgaaaa gctcaaggcg gcgagcgacg
     2281 ccgacaccgc gcgggcgcgc gagcagtcga cggtggcgtc cgagaacgcg cgcatcgagc
     2341 gcgagcagtc gacgcggatc gccgagatcc agaaggctcg cgagctgagg aagctcgaga
     2401 tcgaggcgca gctcagctcc gaggtgagga agatcgacag ctcgatcacg atggcgacca
     2461 agcacgccga ggaggcgaag gcgcaggcca aggccgagct ggcgcgcacc gagatcgttc
     2521 tcgcccagga gcagctgcag accgagcgcg agcgcgccgt cgccgagcgc tcgcgcgaga
     2581 tcgcgctcaa gcgcgagcag gagcgcggcg cggtcgagac gtcgaaggcc gagagcgaga
     2641 ccgcggtgct gctgatgacc gccaaggccg aggcgtcggc gacgacgacc cgcgccgagg
     2701 cgcagcgcat ccgcctcacc gccgagtcag aaggcgcgcg ggcgatgatc gacgccgaga
     2761 actcgcgcac caccgagctg atgcacctgc agctcgagca gcaccggctc gaccgcctgc
     2821 ccgagatcat cgcccagatg atgaagccgg cggagaagat cgacagcatc cgcatccacc
     2881 aggtgaccgg cttcggcggc tcgtcgagcg gctacggcaa cggcgttggc ggcccgggcg
     2941 gcgacggcgc gcagcgcgcg ccggtgacgc aggtgatgga cagcatcctc ggcatggcct
     3001 tgcagcttcc ggccatgaag agcatcggcg attcgatcgg cgtggatctt tccgcggcgg
     3061 tgggtgggcc gaagggagga ggcccggccc cgggtgctcc tgattccgca agcgacaagt
     3121 cgcggcccaa gggctgacgc cggctcgcat cattcgttgc catccggcgc atcaacaaca
     3181 gcagaggaga actccatgtc gttttcacgt cgtcatttca tcgcctcgac gtccggcgcc
     3241 gctgccggta tcgcgttgcc gttccacgtc ttcggacagg gcgcgacgat caagctcggc
     3301 tcggtcctcg acaactccgg caacctcgac gcgtacggca agccgatggt gcaggcgacg
     3361 acgatggcgg ccgaagagat caacgccgcc ggcggcctgc tcggcaggaa gatccaggtc
     3421 gtccagtacg acacccagtc cgacattgcg ctctacacca agtacgcgca gcagctggcg
     3481 cgcgacgaca aggtcgacgt cgtccacggc ggcatcacat cggcgtcgcg cgaggcgatc
     3541 cgccagacct tccggcgcgc caacgtcctc tacttctaca acgtcctcta cgagggcggc
     3601 gtctgcgacc gcaactgcat cgtcaccggc acgacgccgg cacaggtgat ggagccgatc
     3661 gtcgagatcg cgagcaagca gtggggcaag aaggtctacg tgctcgcggc cgactacaac
     3721 tatggccaga tcacggccaa gtggctcgcc cactatgcca agctgcgcgg cggcacggta
     3781 ttgcagaccg acttcttccc gctcgacgtc gccgacttcg gctcgacgat cgcgaagatc
     3841 caggcggcca agcccgaata cgtttgcgcc gcgctcgtcg gcggcgccca cctctcgttc
     3901 ttccgccagt gggcggcgtc ggggatgaac aagaagatcc cgctctgctc gaccaccttc
     3961 ggcgtcggca acgagcacct ggcgctctcg ccggccgaag gcgacggcat cctgatcgcc
     4021 ggcaactaca gccaggaaga cccgtcgccg gcgaacaaag acttcctcgc ccgctgggcc
     4081 aagcgcttcg gcgacaccaa gatcgtccac gagatcgcgg tctcgcagta ccagggcatc
     4141 aagctttggg ccgaggcggt gaagaaggcc ggctcgctcg accgcgagaa gctgctcaag
     4201 gtgatcgagt cggggatcag cgtcgaaggg cccggcggcc tggtcaagat cgatccggcg
     4261 acgcaccacg cctcgctcga catcaaggtg atggaggtca agaaccagaa gctgacgatc
     4321 aagcagacct tcaagcagcg gccgcccagc gacactgccg cgtcgtgcaa cctggccaag
     4381 aacccgaacg agaacaagca gttcgaggtg acgatctaga gcaggtatcg gcgacacgcg
     4441 agcggagccg cctgtggact acgctgccgt cgtcttcctg gagatcctct acatgatcgc
     4501 cttcctcgcg ctgacgagcg cggggctggc ggtcgtgttc gggatgatgc gggtcatcaa
     4561 cctcgcccac ggcgagttcg tgatgatcgg cggctacgtc acgatcttcg ccaaccgcgc
     4621 cggcgtcgac atctggttcg cgatgctcgt cctcgcgccg ctcgtcgtcg gcgtgatcgg
     4681 cctcatcgtc gagcgcgtcg tgatccgcca cctctatggc cggatgatcg acacgatgct
     4741 cgccacctgg ggcctgagcc tcctgatggt cggcctcgtc accctgatct tcggcaacac
     4801 cgcggtgagc gtcaccgcgc cgatccagtc gtaccaggcc ggcgcctacc agatgggcgg
     4861 ctacaacctc ttcatcatcg ccgtcgccat cctgctgatg ctcgttctct ggctggtgct
     4921 gcgctacacg cgcatcggcc tgatcgcgcg cggtgcgatg cagaacgccg acgtcgcctc
     4981 gtcgctcggc tacaaccctc agaagatcta catgtggacc ttcaccgccg gcgccgcgct
     5041 ctcgggcctg gcgggcggcg tgatggcgcc gctcaccggc ctcctgccgt cgtcggggtc
     5101 gctgtacatc gccaagtcgt tcatcaccgt catcacgggc ggcgcggcga tcatctccgg
     5161 cacgctggcg agctcggtga tcttcggcac gatcaaccag atcgtctcgt tcggctcgac
     5221 gccggtgatc ggcgagatcg ccatgctggc gctggcgatc gtcctgctgc gcctgatgcc
     5281 gcagggcatc accggccgct tcttcaagaa ctcgacatga ccggcggacc cacgttcggc
     5341 gtcggacgga tccgctgggg ctggttcatc gtcggctgcg tcgtcgtcct cctgctgccg
     5401 gcggtcaccg gcaccaacac gccggcgctg ctcctgatct gggccctctt cgcgctctcg
     5461 ctcgggctga tgtggggatt cgccggcatc ctcagcttcg gccacgccgc ctacttcggt
     5521 ctcggcgcct acacctatgc aatcgcggcg atgacggtcg gcgagagcac cggcccgctc
     5581 gtgctcgcga tcgtgctgcc ggcggcggcg gcggcggtga tcggcgcaat gatgttctac
     5641 ggccgcatca gcgacgtcta catgggcgtg atcacgctcg tcgtcacgct gatcctgttc
     5701 aagttcatga acgccacggc gggcgacgcg tatcgcatcg ggacggttcg cctgggcggc
     5761 ttcaacggca tcccggcgt
//
LOCUS       DASVHM010000827         1629 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_422961, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000827 DASVHM010000000
VERSION     DASVHM010000827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422961"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1610)
                     /locus_tag="VF308_15185"
     CDS             complement(<1..1610)
                     /locus_tag="VF308_15185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438047.1"
                     /translation="MQPQSLKESIGGPHQDAFDFDALSRIVAKGAPSDELPASRRERL
                     VRTLGVLESQRFFVVAALADADEGDAFDFAFDNCAAAARAFRERMPQLTELVRALSIA
                     ELEADGRYIEAEHDNVFESFGEMSLTADDLARFPDYLVCIPPDRNDASENAGLLEMLS
                     SGLPAKVLVQTSDLFEETSIGTGRFAFGVRSARLATAAMALGGMFVLQSPSSNLYALR
                     GQIGRGLASPGPALFSVFSVPGPAAGGLPPYLVAAAALQSRAFPAFSYEASAGGNWAA
                     RFSLENNPRRDDDWPVENVEYVDTALQRVTEPWAFTFADFALCDARHSAHFACVARAA
                     WSEAMLPAADWLALDESETARRIPYLLAIDGEDALHRVIVDLRLMQAARRCLLLWRRL
                     QEHGGVHDSHAERLLALEKAAWTAAQVSLPATAATAPAASPASTSGAPAANGAAVAPA
                     DEAAPPAHSPDEAWIETARCPSCNECQLINDRMFAYDERKQAYLKDLSAGTYRQLVEA
                     AESCQVAIIHPGKPRDANEAGLAELLERA"
BASE COUNT          247 a          556 c          586 g          240 t
ORIGIN      
        1 gcgcgttcga gcagctcggc gaggcccgcc tcgttggcat cgcgcggctt gccgggatgg
       61 atgatcgcga cctggcagct ttccgcagcc tcgaccagct ggcggtaggt ccccgcgctg
      121 aggtccttga gataggcctg cttgcgctcg tcgtaggcga acatgcggtc gttgatgagc
      181 tggcattcgt tgcagctcgg gcagcgcgcg gtctcgatcc aggcctcgtc gggcgagtgc
      241 gcgggggggg ctgcctcatc ggctggagct accgcggcgc cgttcgctgc cggagctcct
      301 gaagtcgatg cgggcgacgc tgcgggagcg gtcgcggccg tcgccggcaa cgagacctgc
      361 gctgcagtcc acgccgcctt ctcgagcgcg agcagccgtt cggcgtgcga atcgtggacg
      421 ccgccgtgct cctggaggcg acgccacagg agcaggcacc ggcgcgcggc ctgcatcagg
      481 cgcagatcga cgatgacgcg gtgcaacgca tcttcaccat cgatggccag cagatacggg
      541 atccgccgtg ccgtctcgct ctcgtcgagc gcgagccagt cggcggcggg cagcatcgcc
      601 tcgctccacg ccgcgcgggc cacgcaggcg aagtgcgccg aatggcgcgc gtcgcacagc
      661 gcgaaatcgg cgaacgtgaa cgcccaaggc tcggtgacgc gctgcagtgc cgtgtcgacg
      721 tattcgacgt tctccaccgg ccagtcgtcg tcgcgccggg ggttgttttc gagcgagaag
      781 cgagccgccc agttgccgcc cgccgacgcc tcgtagctga aggccggaaa ggcgcgcgac
      841 tgcaacgcgg ccgcggcgac caggtacggt ggcagcccgc ccgctgccgg acccgggacg
      901 gagaacacgc tgaacagcgc cggccccggg gaagccagcc cgcggccgat ttggccacgc
      961 aacgcgtaca ggttcgagct cggcgactgc aggacgaaca tcccgcccag cgccatcgcc
     1021 gccgtcgcca ggcgcgcgct gcgcacgccg aatgcgaagc gaccggtgcc gatcgacgtc
     1081 tcctcgaaga ggtcggaggt ctgcaccagc actttggccg gcaggccgct cgacagcatc
     1141 tccagcaagc ccgcgttctc cgacgcgtcg ttgcggtcgg gcggaatgca gacgaggtag
     1201 tcggggaagc gggcaaggtc gtccgcggtg agcgacatct cgccgaacga ctcgaagaca
     1261 ttgtcgtgct cggcctcgat ataacggccg tcggcctcga gctcggcgat ggagagggct
     1321 ctcaccagct cggtgagctg cggcatgcgc tcgcggaacg cccgcgccgc ggcggcgcag
     1381 ttgtcgaatg cgaaatcgaa ggcgtccccc tcatcggcgt cggcgagcgc ggcgaccacg
     1441 aagaaccgct gcgactcgag cacgcccagc gtccggacca ggcgctcgcg gcgcgatgcg
     1501 ggtagttcgt cgctcggtgc gcctttggcg acgatccgcg agagcgcgtc gaagtcgaac
     1561 gcgtcctggt gcggcccgcc gatcgattcc ttgaggcttt gcggctgcat tcccgcctgc
     1621 gagtggctg
//
LOCUS       DASVHM010000828         2800 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_929411, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000828 DASVHM010000000
VERSION     DASVHM010000828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2800
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_929411"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..531
                     /locus_tag="VF308_15190"
     CDS             <1..531
                     /locus_tag="VF308_15190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX7438048.1"
                     /translation="VNEIGLKHAPLAVSTVGMINSYPNARNVIPGRAFLTVDFRCPVN
                     DELTKMDAELKEGVAKIATAGRLEHDLKQIFQYDCVHFDESCVAMVRAGAERLGYSTR
                     DIVSGAGHDACYMSKVTPTAMIFVPCVGGISHNEIEDAKPEWIEAGGNVLFQAMLAKA
                     NELTVPGKSSEAVAIA"
     gene            562..2013
                     /gene="hydA"
                     /locus_tag="VF308_15195"
     CDS             562..2013
                     /gene="hydA"
                     /locus_tag="VF308_15195"
                     /EC_number="3.5.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019576964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004157 - dihydropyrimidinase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropyrimidinase"
                     /protein_id="HEX7438049.1"
                     /translation="MMSSVLIRGGTVVNAESSVKADVLCDGGLIRSVGPDLQAPAGAT
                     VVDAGGALVMPGGIDPHTHMELPFMGTVTKDDFYTGTSAGVSGGTTMIIDFVIPDAKQ
                     PLMNAWHNWRGWAEKSVADYSFHVAVTWWDQSVHDDMGTLVREHGVNSFKHFMAYKNA
                     IMADDEVLVNSFSRALELGALPTVHAENGELVFQLQKKLVAAGITGPEGHPLSRPPAV
                     EAEAAERAIRIAEVLGTPLYIVHVSSADSVNAIIRARSHGQRVYGEALAGHLTIDDSV
                     YRDPDWNIAAAHVMSPPFRARHHQDALWGALAAGHLHTTATDHCAFCAEQKGMGKDDF
                     SKIPNGCAGVEDRLSVLWDAGVNTGRLTPNEFVRVTSTNAAQIFNLYPRKGAIAAGSD
                     ADLVVWDPSATKTITTAGSISRVGYNVFEGRRVTGLAKVTLSQGRIVWMDGDLRAQRG
                     AGRYVKRPAFAPMFDALKRQAGLHLPQAVARAV"
     gene            2035..>2800
                     /locus_tag="VF308_15200"
     CDS             2035..>2800
                     /locus_tag="VF308_15200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011803375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7438050.1"
                     /translation="MAGPDVKPGRLSACQYLDNFADAHPPLTTVQALIEAERCYYCYD
                     APCVNACPTGIDIPSFIRRIGEDNLRGAAKAILEANVFGGMCARVCPTEVLCEQACVR
                     NTNEDKPVEIGLLQRHATDHYFKAPGASMFTRAPATGKRIAVVGAGPAGLACAHRAAL
                     LGHDVTVFEARPKPGGLNEYGIASYKTVDGFAQREIDWLLSIGGIELRQGQALGQQIL
                     LAALTPQFDAVFLGLGLAGVNALGLADESVPGLGNAV"
BASE COUNT          491 a          954 c          943 g          412 t
ORIGIN      
        1 gtcaacgaga tcgggctgaa gcacgcgccg ctcgcggtct cgaccgtcgg catgatcaac
       61 agctacccga acgcgcgcaa cgtgatcccg ggccgggcgt tcctgacggt ggatttccgt
      121 tgcccggtca acgacgagct gacgaagatg gacgccgagc tgaaggaagg cgtggcgaag
      181 atcgccaccg cgggccggct cgagcacgac ctgaagcaga tcttccagta cgactgcgtt
      241 cacttcgacg agagctgcgt ggcgatggtg cgggccggtg ccgagcggct cggctattcg
      301 acgcgcgaca tcgtttccgg cgccggccac gacgcctgct acatgtcgaa ggtgacgccg
      361 acggcgatga tcttcgtgcc ctgcgtcggc ggcatcagcc acaacgagat cgaggatgcg
      421 aagcccgagt ggatcgaggc cggcggcaac gtgctgttcc aggcgatgct cgccaaggcg
      481 aacgaattga cggtgccagg caagagttcc gaggccgtcg ccatcgcctg aacccgcggt
      541 ttgaagtgaa cctggagaac aatgatgagc agcgtactga tccgcggcgg gaccgtcgtc
      601 aacgccgaga gcagcgtgaa ggccgacgtg ctgtgcgacg gcggtctgat ccgcagcgtc
      661 ggccccgacc tgcaggctcc cgccggcgcc acggtcgtcg atgccggcgg cgcgctcgtg
      721 atgccgggcg gcatcgatcc gcacacccac atggagctgc ccttcatggg cacggtgacg
      781 aaggacgact tctacaccgg cacgtcggcc ggtgtgtccg gcggcacgac gatgatcatc
      841 gacttcgtga tccccgatgc gaagcagccg ctgatgaacg cctggcacaa ctggcgcggc
      901 tgggccgaga agtcggtcgc cgactacagc ttccacgtcg cggtgacctg gtgggaccag
      961 agcgtgcacg acgacatggg cacgctcgtg cgcgagcacg gcgtgaacag cttcaagcac
     1021 ttcatggcct acaagaacgc gatcatggcc gacgacgaag tgctggtgaa cagcttcagc
     1081 cgcgcgctcg aactcggcgc cttgccgacc gtgcacgccg agaacggcga gctcgtgttc
     1141 cagctgcaga agaagctggt cgcggccggc atcaccgggc ccgaaggtca ccccttgtcg
     1201 cgaccacccg cggtcgaggc cgaagcggcc gagcgcgcga tccgcatcgc cgaggtgctg
     1261 ggcacgccgc tctacatcgt gcacgtgtcg agcgcggatt cggtcaacgc gatcatccgg
     1321 gcgcgcagcc acggccagcg cgtgtacggc gaggcgctgg ccggccatct gacgatcgac
     1381 gattcggtat atcgcgatcc cgactggaac atcgccgcgg cccacgtgat gagtccgccg
     1441 tttcgcgcca ggcaccacca ggacgcgctc tggggtgcac tggccgccgg ccacctgcac
     1501 acgaccgcga ccgatcactg tgctttctgc gccgagcaga aaggcatggg caaggacgac
     1561 ttcagcaaga tcccgaacgg ctgcgccggc gtcgaagacc gcctgtcggt gctctgggac
     1621 gcgggcgtga acacagggcg tttgacgccg aacgagttcg tccgcgtgac ctcgaccaac
     1681 gccgcgcaga tcttcaacct atatccgagg aagggtgcga tcgcggccgg cagcgacgcc
     1741 gacctcgtgg tctgggaccc gagcgccacc aagaccatca cgacggccgg cagcatctcc
     1801 agggtcggct acaacgtgtt cgagggccgc agggtgacgg ggctggcgaa ggtcacgctg
     1861 tcgcagggca ggatcgtctg gatggacggc gacctgcgcg cccagcgtgg cgcgggccgc
     1921 tacgtgaagc ggccggcatt cgcgccgatg ttcgatgcgc tgaagcgcca ggccggcctg
     1981 cacctgccgc aggccgtcgc gcgtgcggtc tgacgtgaac cccaggaccc tttgatggcc
     2041 ggtcccgacg tcaagcccgg ccgcctgtcg gcttgccagt acctcgacaa ctttgccgac
     2101 gcccacccgc ccctcaccac cgtccaggcg ctgatcgaag ccgagcgctg ctactactgc
     2161 tacgacgcgc cctgcgtcaa cgcctgcccg accggcatcg acatcccgtc gttcatccgt
     2221 cgcatcggcg aagacaacct gcgcggcgcg gccaaggcca tcctcgaggc caacgtgttc
     2281 ggcggcatgt gcgcacgcgt gtgcccgacc gaggtgctgt gcgaacaggc ctgcgtgcgc
     2341 aacacgaacg aagacaagcc ggtcgagatc ggcctgctgc agcgccatgc gactgaccac
     2401 tacttcaagg cgcccggtgc gtcgatgttc acgcgcgccc ctgccaccgg caagcgcatc
     2461 gcggtggtcg gcgccggccc ggctggcctc gcgtgcgcgc accgcgccgc gctgctcggc
     2521 cacgacgtaa cggtgttcga ggccaggccc aagcccggcg gcctgaacga atacggcatc
     2581 gcgagctaca agaccgtcga cggctttgcg cagagggaga tcgactggct gctgtcaatc
     2641 ggcggcatcg agctgcgcca ggggcaagcg cttggccagc agatcctgct cgccgccctg
     2701 acaccgcagt tcgacgccgt gttcctcggg ctcggcctcg ccggcgtcaa tgcactggga
     2761 ctggccgacg aaagtgtgcc gggcctcggc aacgccgtcg
//
LOCUS       DASVHM010000829         1672 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1363132, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000829 DASVHM010000000
VERSION     DASVHM010000829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1363132"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1156
                     /locus_tag="VF308_15205"
     CDS             <1..1156
                     /locus_tag="VF308_15205"
                     /EC_number="2.7.7.65"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HEX7438051.1"
                     /translation="GRLGGDEFVALLPEVTDDDDAERVATRILEVMRKPIMIGLQECF
                     VTASVGIAIFPRDGATVADLLRNSDVAMYSVKSSGRNAASLYHPLLAGQGREKIELES
                     ALHKAIEREELVLHYQPKIDVRGARMVGAEALMRWRRNGVLVPPGDFIPLAEETGLIT
                     PLSEWAIREAARQSRIWQDNFGFADSIAVNLPSRLFERTDLVEYIHNAVTTYGVPHHA
                     IELEITETSLMKDLQNVIPSLHRLNEIGVEISIDDFGTGYSSLAYLTTLPISELKIDR
                     SFIRDLGMTPQSSAVVTAIIALARSLGLRVVAEGVENLRQMEVLHRLGCGIMQGFLFS
                     RPQLPEDIETWLHQTVLPRKAPWIGKAGEDDVPEVPRPARARPPRATPFG"
     gene            1169..>1672
                     /locus_tag="VF308_15210"
     CDS             1169..>1672
                     /locus_tag="VF308_15210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEX7438052.1"
                     /translation="MGVIRTIPDKPAAEMSPALLAKGALRRLAVERLEPTPENYARAY
                     RFEAGHPKGSSVLPARAQKLVEMVSARAFDGGAAAANGDFTKAMAEGQWDLAERALEV
                     APGDGAEALAGLIERIIRGLERGGQNWTAARRKVGIQRVFEASRSDARRLHQRLSQLV
                     SSWEGDAV"
BASE COUNT          276 a          583 c          565 g          248 t
ORIGIN      
        1 gggccggctc ggcggcgacg agttcgtcgc cctgttgccc gaagtcaccg acgacgacga
       61 cgccgagcgc gtcgcgacgc gcatcctcga ggtgatgaga aagccgatca tgatcggcct
      121 gcaggagtgc ttcgtcaccg cgagcgtcgg catcgcgatc ttcccgcgcg acggcgccac
      181 cgtggccgac ctgctgcgca attcggacgt ggcgatgtac tcggtgaagt cctccgggcg
      241 caacgccgcg tcgctctacc acccgctgct cgccggccag ggccgcgaga agatcgaact
      301 cgaaagcgcg ctgcacaagg cgatcgagcg cgaagagctg gtgctccact accagccgaa
      361 gatcgacgtg cgtggcgccc gcatggtcgg cgccgaggcg ctgatgcgct ggcgtcgcaa
      421 cggcgtgctg gtgccgccgg gcgatttcat tccgctcgcc gaggagaccg gcctgatcac
      481 gccgctcagc gaatgggcga tccgcgaagc cgcgcgccag tcccgcatct ggcaggacaa
      541 cttcggcttc gccgattcga tcgcggtcaa cctgccgagc cggctgttcg agcgcaccga
      601 cctggtcgag tacatccaca acgcggtcac gacctacggc gtgccgcatc acgcgatcga
      661 gctcgagatt accgagacga gcctgatgaa ggacctgcag aacgtcatcc cgtcgctgca
      721 ccggctcaac gagatcgggg tcgagatctc gatcgacgac ttcggcaccg gctactcgtc
      781 gctcgcctac ctgacgacgc tgccgatcag cgaattgaag atcgaccgca gcttcatccg
      841 cgacctcggc atgacgccgc agagctccgc cgtggtcacc gcgatcatcg cgctggcccg
      901 atcgctcggc ctgcgcgtcg tcgccgaggg cgtcgagaac ctgcgtcaga tggaagtgtt
      961 gcatcgcctg ggctgcggga tcatgcaggg ctttctcttc agccggccgc agctgcccga
     1021 ggacatcgag acctggttgc accagaccgt cttgccgagg aaggcgccgt ggatcggcaa
     1081 ggccggtgaa gacgacgtcc ccgaggtgcc gcgcccggcc cgcgcgcgcc ctccgcgtgc
     1141 cacacccttc ggctgaggtc tcaccgccat gggtgtcatt cgcacaatcc ccgacaagcc
     1201 cgccgccgaa atgtcgccgg ccctgttggc caagggcgcg ttgcgccgtc tggcggtcga
     1261 gcggctcgag cccacgcccg agaactatgc gcgcgcctat cgcttcgagg ccggccaccc
     1321 gaaaggctcg agcgtgctgc cggcgcgcgc gcaaaagctc gtcgagatgg tgagtgcgcg
     1381 ggccttcgac ggcggtgccg ccgcggcgaa cggcgacttc acgaaggcga tggccgaagg
     1441 ccagtgggac ctcgccgagc gtgcgctcga ggttgcgccg ggcgacggcg ccgaagcgct
     1501 cgccgggctc atcgagcgca tcatccgcgg cctggaacgc ggcggccaga actggaccgc
     1561 ggcacgccgc aaggtcggca tccagcgcgt gttcgaagcc agccgcagcg atgcacggcg
     1621 cctgcaccag cgtctttcgc aactggtgtc gagttgggaa ggcgacgcgg tc
//
LOCUS       DASVHM010000830         2809 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_423282, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000830 DASVHM010000000
VERSION     DASVHM010000830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423282"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..434)
                     /locus_tag="VF308_15215"
     CDS             complement(<1..434)
                     /locus_tag="VF308_15215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX7438053.1"
                     /translation="MGTTAFIGGGNMATAIIGGLRRGGRAGETLIVVEPSSVQRERLA
                     ADFGVRALAFADASLREADLVVWAVKPQLFKAAAAPAAPFIGAALQLSVMAGIRSDAI
                     AHAAGTERVVRAMPNTPALIGRGIAGLYARAAVDARGRAEVEA"
     gene            508..996
                     /locus_tag="VF308_15220"
     CDS             508..996
                     /locus_tag="VF308_15220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007854213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX7438054.1"
                     /translation="MHLEGSCHCGAVRFSLEAHSPVPFMHCHCSICRKTAGGGGYAIN
                     LGGDATTLKVRGAKNLGLYHAVMREPGRRATRSKAERRFCLKCGSALWLWDPRWPELV
                     HPHASAIDTPLPRPPEVVEAALDFVAPWVDVPRGRGHVHCATWPGESLEEWHKRHGLL
                     SV"
     gene            complement(993..1679)
                     /locus_tag="VF308_15225"
     CDS             complement(993..1679)
                     /locus_tag="VF308_15225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019562207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEX7438055.1"
                     /translation="MAMIADKLQQVRARIERACLDAGRPVESVTLLAVSKRVVAQAVR
                     EAVAAGVYRFGENHVQEGIEKIAALADLRERIEWHLIGPLQSNKTRLAAEHFDWVHSV
                     DRLKIAERLAEQRPAHLAPLQVCLQVNISGERTKSGLDPAEVASTALAVARLPRLRLR
                     GLMAVPQPIEGFEAQRAPHRALRELQEELVARGLALDTLSMGMSADLEAAITEGSTIV
                     RVGTAIFGAR"
     gene            1748..2791
                     /locus_tag="VF308_15230"
     CDS             1748..2791
                     /locus_tag="VF308_15230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019657566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HEX7438056.1"
                     /translation="MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINVDPLEH
                     KQVHDMVYDIMNDSQRKNYEETLECDFSFEIQGLARFRVNAFNQNRGAGAVFRTIPSK
                     ILTLEQLNCPPVFAELSLKPRGLVLVTGPTGSGKSTTLAAMVNHLNENEFGHVLTVED
                     PIEFVHESKKCLINQREVGPHTLSFANALRSALREDPDCILVGEMRDLETIRLALTAA
                     ETGHLVFGTLHTSSAAKTVDRIVDVFPAAEKEMVRSMLSESMIGVISQTLCKTKDGAG
                     RVAAHEIMLGNAAIRNLIRENKVAQMYSSIQTGNNVGMQTLDQNLADLVRRNIVAPAE
                     ARSKAKFPENFPG"
BASE COUNT          471 a         1003 c          909 g          426 t
ORIGIN      
        1 gcttcgactt cggcgcggcc gcgcgcgtcg accgcagcgc gggcataaag gcccgcgatg
       61 cctcgcccga tcagcgccgg ggtgttcggc atcgcccgca ccacgcgctc ggtgcctgcg
      121 gcatgcgcga tggcgtcgct gcggatgccc gccatcacgc tgagctggag cgcggcgccg
      181 atgaacggcg ccgccggcgc cgccgcggcc ttgaagagct gcggcttgac ggcccagacc
      241 accaggtcag cctcgcgcag cgacgcatcg gcaaacgcga gcgcgcgcac gccgaagtct
      301 gcggcgagcc gctcgcgctg cacggagctc ggctcgacca cgatcagcgt ctccccggcg
      361 cggccgccgc ggcgcaggcc gccgatgatc gccgtcgcca tgttgccgcc accgatgaaa
      421 gccgtcgtgc ccatggcggc agtgtacgca gcgcggatgg cgcgcacggg gcatcatcga
      481 ggccgatcga tctgctcggg agatgtgatg cacctcgaag gttcttgcca ttgcggcgcc
      541 gtgcggttca gcctcgaagc gcacagcccc gttcccttca tgcactgcca ttgctcgatc
      601 tgccgcaaga cggcgggtgg cggcggctat gcgatcaacc tcggcggcga cgcgacgacg
      661 ctgaaggtgc gcggcgcgaa aaacctcggc ctctaccatg ccgtgatgcg cgagccgggc
      721 cggcgcgcga cgcgctcgaa ggccgagcgc cgcttctgcc tcaagtgcgg cagcgcgctt
      781 tggctctggg atccgcgctg gccggagctg gtgcacccgc acgcctcggc catcgacacg
      841 ccgttgccca gaccccccga agtggtcgaa gcggcgctcg atttcgtcgc gccctgggtc
      901 gacgtgccgc gcgggcgcgg ccacgtgcac tgcgcgacgt ggccggggga gtcgctcgag
      961 gagtggcaca agcgccacgg tctgctcagc gtctagcgcg cgccgaagat cgcggtaccc
     1021 acgcgcacga tcgtcgaacc ttcggtaatc gcggcttcga ggtccgcgct catccccatc
     1081 gacaaggtat cgagcgcaag accgcgcgcg accagttcct cctgcaactc gcgcagcgcc
     1141 cgatgcggcg cgcgctgggc ctcgaatccc tcgatcggtt ggggcacagc catcagcccg
     1201 cgcagcctga ggcgcggcag ccgggcgacc gcgagcgcgg tcgaggcgac ttcggccggg
     1261 tcgaggccgc tcttggtgcg ctcgccgctg atattgacct gcaggcacac ctgcagcggc
     1321 gccaggtgcg cgggccgctg ctcggccagg cgctcggcga tcttcaaccg atcgaccgaa
     1381 tggacccagt cgaagtgctc ggccgcaagc cgcgtcttgt tgctttgcag cggcccgatc
     1441 aggtgccact cgatgcgctc gcgcagatcg gcgagcgcgg cgatcttctc gatgccttcc
     1501 tgcacgtggt tctcaccgaa gcgatacacc ccggccgcga ccgcttcgcg caccgcctgc
     1561 gccacgacgc gcttgctgac cgcaagcaac gtgacgcttt ccacggggcg cccggcatcg
     1621 aggcaggccc gctcgatgcg cgctctcact tgttggagct tgtctgcgat cattgccata
     1681 atgcgccgag agtcccccgc gtcggcgcag ccccagcgcc cgcacggcgc caaccactct
     1741 ccgatccatg gacatcaccc aactgctggc attctcggtc aagaacaagg cgtctgacct
     1801 gcacctgtca gcggggcttc cgcccatgat ccgcgtacac ggcgatgtgc gccgcatcaa
     1861 tgtcgacccg ctcgagcaca agcaggtgca cgacatggtg tacgacatca tgaacgactc
     1921 gcagcgcaag aactatgaag aaacgctgga gtgcgacttc tcgttcgaaa tccagggcct
     1981 ggcgcgcttt cgggtcaacg cgttcaacca gaaccgcggc gccggtgccg tgttccggac
     2041 gattccgtcg aagatcctga cgctcgagca actgaactgc ccgccggtct tcgccgaact
     2101 ctcgctcaag ccgcgcggcc tcgtcctggt caccgggccg accggctcgg gcaagtcgac
     2161 gacgctcgcc gcgatggtca accacctcaa cgagaacgag ttcggccacg tgctgacggt
     2221 cgaagacccg atcgaattcg tgcacgaatc caagaaatgc ctgatcaacc agcgcgaggt
     2281 cgggccgcac accttgagct tcgccaacgc gctgcgctcg gccctgcgcg aggacccgga
     2341 ctgcatcctg gtcggcgaaa tgcgcgacct tgagacgatt cgcctggccc tcacggccgc
     2401 ggaaacgggc cacctcgtgt tcggcacgct gcacacctcg agcgcggcca agaccgtgga
     2461 ccgcatcgtc gacgtgttcc cggcggccga gaaggagatg gtgcggtcga tgctgtccga
     2521 atcaatgatc ggcgtgatct cgcagacgct gtgcaagacc aaggacggcg ccggacgcgt
     2581 cgcggcgcac gagatcatgc tcggcaatgc cgcgatccgc aacctgatcc gcgagaacaa
     2641 ggtcgcgcag atgtactcgt cgatccagac cggcaacaac gtcggcatgc agacgctcga
     2701 ccagaatctc gccgatctgg tccggcgcaa catcgtggct ccggccgaag cccgctcaaa
     2761 ggccaagttc cccgagaact tccccggcta gggcctgagc cgcaacttt
//
LOCUS       DASVHM010000831         2519 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_855669, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000831 DASVHM010000000
VERSION     DASVHM010000831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_855669"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VF308_15235"
     CDS             complement(<1..185)
                     /locus_tag="VF308_15235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438057.1"
                     /translation="MDAPFRPIANPVRSIYEQTLRDDSVIVNIGPSHPATHGTVQIIA
                     ELDGERVLRTDIHCGYL"
     gene            complement(195..674)
                     /locus_tag="VF308_15240"
     CDS             complement(195..674)
                     /locus_tag="VF308_15240"
                     /inference="COORDINATES: protein motif:HMM:NF012549.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEX7438058.1"
                     /translation="MSAATSLFDTLQERLAPTAGPGLVSHGIPVFALPPDALLPTVRQ
                     LRDEHGFDIFLDVTAIDWVDQVPRFEVVYHFYSTAHKVRVRLKTRVAEADPGVDSLTP
                     LYGSAAFMERECHDMYGIRFRGNADLRPILLYEGFVGHPLRKDYPKQQEQPLVPYRS"
     gene            complement(671..1189)
                     /gene="nuoB"
                     /locus_tag="VF308_15245"
     CDS             complement(671..1189)
                     /gene="nuoB"
                     /locus_tag="VF308_15245"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011810547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HEX7438059.1"
                     /translation="MYARTVPIVPASREKDGAFEYLTTRKDELIGWARKFSIFPYPFV
                     TACCAMEFMAVSASPYDTDRFGAALPRFSPRQADLLMVVGTVTHKQAPILLKVYEQMC
                     EPKWVMAFGVCATSGGFYQNYAALPGIDKVIPVDIYIPGCPPRPEMVIDGIMQLQEKI
                     AGSRHLIFNDKV"
     gene            complement(1212..1577)
                     /locus_tag="VF308_15250"
     CDS             complement(1212..1577)
                     /locus_tag="VF308_15250"
                     /inference="COORDINATES: protein motif:HMM:NF012717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEX7438060.1"
                     /translation="MNPYSVFLLYLLAILGFVAITLGMNAVLGPKPAPTAVKLEPFEC
                     GATPVSTLNVKAVPIKYYAVAIIFILFDLETVFLFIWALGAQPLSSFMLLTFFLFVFL
                     LVLILLYVYKARLIEAVTE"
     gene            complement(1741..>2519)
                     /locus_tag="VF308_15255"
     CDS             complement(1741..>2519)
                     /locus_tag="VF308_15255"
                     /inference="COORDINATES: protein motif:HMM:NF023282.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MtrB/PioB family outer membrane beta-barrel
                     protein"
                     /protein_id="HEX7438061.1"
                     /translation="LWGRVVAQPRDNLSLSLKLAHAWRDNSPYGTSTWFGFAENRLLR
                     KFYLADRVRDSAEARADFAFGEKVTLGVSADYANDDYKNSAVGLTSARSVNLAADLAV
                     AVSEQTQVHAFAQGQWINSEQAGSQAFAAPDWTGRVKDRFDVLGVGVKHSVIPAKLDV
                     GADLTISRSRSDVAVDISAAAPPFPTATTQLDSFKLYATYKLKDNLWLSGSYWFEHYD
                     SQDWQFDGIMPATIPNLLVLGAQPPRYNVNAFRVALRYRF"
BASE COUNT          419 a          766 c          926 g          408 t
ORIGIN      
        1 tgcaggtagc cgcagtggat gtcggtgcgc agcacgcgct cgccgtcgag ctcggcgatg
       61 atctgcacgg tgccgtgcgt ggccgggtgc gacgggccga tgttgacgat gaccgagtcg
      121 tcgcgcagcg tctgctcgta gatcgagcga acggggttgg cgatggggcg aaagggggcg
      181 tccacggcgg gccttcagct gcggtagggc acgagcggct gctcctgctg cttggggtag
      241 tccttgcgca gcgggtggcc gacgaagccc tcgtagagga ggatgggacg caggtcggcg
      301 ttgccgcgga agcggatgcc gtacatgtcg tggcactcgc gctccatgaa cgcggccgag
      361 ccgtacagcg gcgtcaggct gtccacgccc gggtcggctt cggcgacgcg cgtcttcaac
      421 cgcacgcgca ccttgtgcgc ggtcgagtag aagtggtaga cgacctcgaa gcgcggcacc
      481 tggtcgaccc agtcgatcgc ggtgacgtcg aggaagatgt cgaagccgtg ctcgtccctg
      541 agctgccgca ccgtgggcag cagcgcgtcg ggcggcaggg cgaagaccgg gatgccgtgc
      601 gatacgaggc ccggcccggc cgtcggcgcc aggcgctcct gcagcgtgtc gaagagggac
      661 gtcgccgcgc tcataccttg tcgttgaaga tgaggtggcg gctgccggcg atcttttcct
      721 gcagttgcat gatcccgtcg atcaccatct cgggccgcgg cgggcagccc gggatgtaga
      781 tgtccaccgg gatcaccttg tcgatgcccg gcagcgccgc gtagttctgg tagaagccgc
      841 cgctcgtcgc gcagacgccg aaggccatca cccacttggg ctcgcacatc tgctcgtaga
      901 ccttgagcag gatcggcgcc tgcttgtgcg tgaccgtgcc gaccaccatc agcaggtcgg
      961 cctggcgcgg cgagaagcgc ggcagggcgg cgccgaagcg gtcggtgtcg tagggcgagg
     1021 cgctcaccgc catgaactcc atcgcgcagc aggccgtgac gaaggggtag gggaagatcg
     1081 agaacttgcg cgcccagccg atcagctcgt ccttgcgcgt cgtcaggtac tcgaaggcgc
     1141 cgtccttctc gcgtgacgcc ggaacgatgg ggacggtgcg tgcgtacatg ggccgggtcc
     1201 ggtcggcggg cctactccgt caccgcctcg atcagccgcg ccttgtagac gtacagcagg
     1261 atcaggacga ggaggaagac gaagaggaag aaggtcagca gcatgaagct gctgagcggc
     1321 tgcgcgccga gcgcccagat gaagaggaac acggtctcga ggtcgaacag gatgaagatg
     1381 atcgcgacgg cgtagtactt gatcggcacc gctttcacgt tcagcgtgct gaccggcgtc
     1441 gcgccgcatt cgaagggctc gagcttcacc gccgtgggtg ccggcttcgg gcccagcacg
     1501 gcgttcattc ccagcgtgat ggcgacgaac ccgaggatcg cgaggaggta gagcagaaag
     1561 acggaatagg ggttcatgcg tggcgcttgc ttcgcgtcgt gccaccgaac gaccggtgcg
     1621 caatgccgtg cagactagcg gctggcctcg ccgccgagct tgcttcagat caagggacgg
     1681 cgagggccgc aatgtcctcg cgggcctgcc ggtgggacgg tggcgcggcc tgaacgggcg
     1741 ctagaagcgg taccgcaggg cgaccctgaa ggcgttcacg ttgtagcgcg gcggttgcgc
     1801 gccgagcacc agcagattcg ggatcgtcgc gggcatgatc ccgtcgaact gccagtcctg
     1861 cgagtcgtag tgctcgaacc agtagctgcc gctgagccac aggttgtcct tgagcttgta
     1921 ggtggcgtag agcttgaaac tgtcgagctg ggtcgtggcg gtcggaaacg gcggcgcagc
     1981 ggcgctgatg tcgaccgcga cgtcgctgcg cgaacgcgag atcgtgaggt cggcgccgac
     2041 gtccagtttg gcgggaatga cggaatgctt gacgcccacc ccgagcacgt cgaaccggtc
     2101 cttgacgcgg ccggtccagt cgggggcggc gaacgcctgg ctgccggcct gctccgaatt
     2161 gatccattgg ccctgcgcga acgcgtggac ctgcgtctgc tcggagaccg cgaccgccag
     2221 gtcggcggcg agattgacgc tgcgagccga agtgagaccg accgcggagt ttttgtagtc
     2281 gtcgttcgcg tagtcggcgg aaacgccgag ggtgaccttc tcgccgaacg cgaagtcggc
     2341 tcgcgcttcg gcgctgtcgc gaacgcggtc ggccaggtag aacttccgca gcagccggtt
     2401 ctccgcaaac ccgaaccagg tcgacgttcc ataaggcgag ttgtcgcgcc aggcgtgcgc
     2461 gagcttgagc gacagcgaca ggttgtcgcg cggctgcgcg acgactcgac cccagagcg
//
LOCUS       DASVHM010000832         4959 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_930241, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000832 DASVHM010000000
VERSION     DASVHM010000832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4959
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_930241"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..570
                     /gene="rpoE"
                     /locus_tag="VF308_15260"
     CDS             <1..570
                     /gene="rpoE"
                     /locus_tag="VF308_15260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HEX7438062.1"
                     /translation="VKQGDVKAFEMLVVKYQRRIERLIGRMVRDVDLVPDIAQETFIR
                     AYRALPQFRGDSAFYTWLYRIAVNTAKKTLMELKRDPLVTESARASREDDDDNPRVEN
                     EPSDAATPDAVLASKQIAAAVNFAVEALSEDLRQAITLREIEGLSYEEIAELMNCPIG
                     TVRSRIFRAREAIAARLRPLLDTREGDRW"
     gene            630..1262
                     /locus_tag="VF308_15265"
     CDS             630..1262
                     /locus_tag="VF308_15265"
                     /inference="COORDINATES: protein motif:HMM:NF015810.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-E factor negative regulatory protein"
                     /protein_id="HEX7438063.1"
                     /translation="MAIGGFDDPAKERLSALVDGELDPAESAASCAAWSSDGGLRADW
                     HAWHLIGDVLRSEDLASDPQRDRRLQLVVRARLRSEPVVLALVPALPASEGRRFARAA
                     RPTRWTAGAAVAGGFVLVAGTFALIRPGESPVPARIALGDGAVVAASAVARAPSATPE
                     PQVAIVADSKVIHDAQLDRYLEAHKQFSGTSALGVPSAFLRSATVDSASR"
     gene            1275..2303
                     /locus_tag="VF308_15270"
     CDS             1275..2303
                     /locus_tag="VF308_15270"
                     /inference="COORDINATES: protein motif:HMM:NF015825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucB/RseB C-terminal domain-containing protein"
                     /protein_id="HEX7438064.1"
                     /translation="MFLRAAAVLTFTWAALAHAAPACSQALPQTASPTAPSEVRAWLL
                     RIHDAASRRNFQGTFVVSGGGNVASARIAHFCEGPNQYERIESLDGRQRRVYRHNDVV
                     HTVWPVSHVAMIEQRGMLSSFPALLQAGDDGIADWYEVRAEGSERVAGHEANVLAIRA
                     RDGLRYGYRLWADRASGLLLRAEVVGERGDILETSAFSDVVIGIRPQPESVLSAMRKL
                     DGYRVVRPVLTPTRLEAEGWTMRQVAPGFRPVSCVSRQIEAPSDVAGETAAPPVIQSI
                     YSDGLTYVSVFIEPFRPARHSKPMFAALGATSTLAQRQGDWWVTVVGDTPPATLRMFA
                     AALERRKP"
     gene            2370..3833
                     /locus_tag="VF308_15275"
     CDS             2370..3833
                     /locus_tag="VF308_15275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HEX7438065.1"
                     /translation="MPLFLLSPRSPANRLAYAALALSFSLFASAAPTPVGAQGLPDFT
                     DLVEKVGPAVVNIRTTERGRTARASGNEQEDEMAELFRRFFGVPGQPNRPNPRGPQPD
                     GEPQQRGVGSGFILNADGYVLTNAHVIDGADEVIVTLADKREFKAKTIGADKRSDVAL
                     VKIEASGLPTVRIGDVSKLKVGEWVIAIGSPFGLESTVTAGIVSAKSRDTGDLLPLIQ
                     TDVAINPGNSGGPLINMRGEVVGINSQIYSRSGGYMGISFAIPIDEATRVSEQLRVSG
                     RVIRGRIGVVIARLTREVAESIGLGKPVGALVQSVEAGGPAEKAGVEPGDVITKVDGR
                     TVESSVELPRIVGSIKPGTKAALQVFRRGSNRELSVVVAEFEPERVVARRAPERDSAK
                     PPTVSSIGVAVSDLTDAQKRELKVKNGVRVESADGAAARAGIRENDVILSVDNVEVTS
                     AKQFETALAKLDKAKPVTILIRQGDVAKFVIVRPLRQ"
     gene            4249..>4959
                     /locus_tag="VF308_15280"
     CDS             4249..>4959
                     /locus_tag="VF308_15280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013593665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEX7438066.1"
                     /translation="MDQIRNFSIIAHIDHGKSTLADRLIQRCGGLSDREMEAQVLDSM
                     DIERERVITIKAQTAALQYTARDGRTYQLNLIDTPGHVDFSYEVSRSLSACEGALLVV
                     DASQGVEAQTVANCYTALDLGVEVVPVLNKMDLPQADPDRTRAEIEDVIGIDADDAIP
                     CSAKTGEGIDEILEAVVHRMPAPRGNPDGPLRAMIIDSWFDNYVGVVMLVRVVDGQLL
                     RGERIRLMASDAVYGADQL"
BASE COUNT          793 a         1714 c         1664 g          788 t
ORIGIN      
        1 gtcaagcaag gcgacgtcaa ggctttcgag atgctggtcg tcaagtacca gcgcaggatc
       61 gaaaggctga tcggtcgaat ggttcgcgac gtcgacctcg tccccgacat cgcgcaggag
      121 acgttcatcc gcgcctaccg cgccttgccc cagttccgcg gcgacagcgc gttctacacc
      181 tggctctacc ggatcgcggt caacaccgcc aagaagaccc tgatggagct caagcgcgat
      241 ccgctcgtca ccgaatcagc gcgcgcgagc cgcgaggatg acgacgacaa tccgcgggtc
      301 gagaacgagc cgagcgacgc cgccaccccc gacgccgtcc tggccagcaa gcaaatcgcg
      361 gcggcggtga actttgcggt cgaagcgttg tcggaagatt tgaggcaggc gatcacgctg
      421 cgcgagatcg agggcctcag ttacgaggaa atcgccgaac tgatgaactg cccgatcggc
      481 accgtccggt cgcggatctt cagggcgcgc gaagccattg cggcacggct gcgcccgctg
      541 ctggacacgc gcgagggcga tcgttggtga ccgggccctg gcgagattgc gtgaaaagtg
      601 ctttttgacg ttggtttcgg agaaatgaca tggcgatagg cggttttgac gatccggcga
      661 aagagcggct gtcggctttg gtcgatggcg agctcgaccc ggccgaatcg gcagcgtcct
      721 gtgccgcctg gagcagcgac ggcgggctgc gtgccgactg gcacgcctgg catctcatcg
      781 gcgacgtgct ccgttcggaa gatctcgcct ccgacccgca gcgcgaccgc cgtttgcaac
      841 tcgtggtgcg ggcgcggctt cggagcgaac cggtcgtcct cgcgctcgtg cccgcgctgc
      901 ccgcttcgga gggccggcgc ttcgcccgcg ccgctcgtcc cacccggtgg acggccggcg
      961 cagcggttgc tggggggttc gtgctcgtcg ctggtacttt cgccctgatc cgacccggcg
     1021 agtcgccggt gccggcgcgg atcgcgctcg gcgatggcgc cgtcgtggct gcctccgccg
     1081 tcgcccgggc gccgagcgcc acgccggagc cgcaggtggc gatcgtcgcc gacagcaagg
     1141 tcatccacga cgcccagctc gaccgctacc tcgaggccca caagcagttc tccggtacgt
     1201 ccgcgctcgg cgtgccgtcg gcattcctgc gcagtgcgac ggtcgattcc gcctcgcgct
     1261 gatcgcggcc gatcgtgttc ctgcgcgccg ccgctgtctt gaccttcaca tgggccgcgc
     1321 tggcccatgc ggcgccggcg tgcagccagg cgctgccgca gaccgcctcg ccgacggcgc
     1381 cgagcgaggt gcgtgcctgg ctgctgcgca tccacgacgc cgccagccgg cgcaacttcc
     1441 agggcacgtt cgtggtcagc ggcggcggca acgtcgccag cgcccggatc gcccatttct
     1501 gcgaaggccc gaaccagtac gagcggatcg agtcgctcga cggccggcag cgccgggtct
     1561 atcgccacaa cgatgtcgtc cataccgtct ggccggtcag ccatgtggcg atgatcgagc
     1621 agcgcggcat gctgagctcg tttccggcat tgctgcaggc gggcgacgac ggcatcgccg
     1681 actggtacga ggttcgcgcc gagggcagcg agcgggtcgc cggccacgag gccaacgtcc
     1741 tggcgattcg cgcccgcgac ggcctccgct atggctaccg cctctgggcc gatcgtgcct
     1801 ccggcttgct gctgcgcgcc gaggtcgtcg gcgagcgcgg cgacatcctc gagacgtcgg
     1861 cgttttccga cgtcgtcatc ggtatccggc cgcagcccga gagcgtattg agcgcgatgc
     1921 gcaagctcga cgggtatcgc gtcgttcgcc cggtcctcac gccgacgcgc ctcgaggccg
     1981 aaggctggac gatgcgccag gtggcgcctg gctttcgccc ggtgagctgc gtcagccggc
     2041 agatcgaggc gccgagcgac gtcgccggcg agacggccgc gccgcccgtg atccagagca
     2101 tctactccga cggcctgacc tacgtctccg tgttcatcga gccgtttcgc cccgcgcgcc
     2161 attcgaagcc gatgttcgcc gctctcggcg cgacgtcgac cctggcgcag cgtcagggcg
     2221 actggtgggt gacggtcgtc ggcgatacgc cgccggcgac gctcagaatg ttcgccgcag
     2281 cgctcgagcg aagaaagccc taggctttcg ctcctgcgcc accgcttcgc ctgcttcgcc
     2341 aacctcgtcg tccccgacgg actcacgcca tgccgctctt cctgctttcg ccccgctcgc
     2401 ccgcgaaccg cctggcgtac gccgcgctcg cgctgtcctt cagcctgttc gcgtccgccg
     2461 cgccgacgcc ggtcggcgcg caaggccttc cggatttcac cgacctggtc gaaaaggtcg
     2521 gccccgccgt cgtcaatatc cgcacgaccg agcggggccg gacggcgcgc gcctccggca
     2581 acgagcagga agacgagatg gccgagctgt tccggcgctt cttcggcgtg ccggggcagc
     2641 cgaaccggcc caatccgcgc ggcccgcagc ctgacggcga gccgcagcag cgcggcgtcg
     2701 gctccggctt catcctcaac gccgacggct acgtcctcac caacgcccat gtcatcgatg
     2761 gcgccgacga ggtgatcgtc acgctcgccg acaagcgcga gttcaaggcg aagacgatcg
     2821 gcgccgacaa gcgctccgac gtggccttgg tcaagatcga agcgagcggc ctgccgacgg
     2881 tgcggatcgg cgacgtctcg aagctgaagg tcggcgagtg ggtgatcgcc atcggctcgc
     2941 cgttcggcct cgaaagcacc gtcacggccg gaatcgtcag cgccaagtcg cgcgacaccg
     3001 gcgacctgct gccgctgatc cagaccgacg tcgccattaa ccccggcaac tccggcggcc
     3061 cgctcatcaa catgcgcggc gaggtcgtcg gcatcaactc gcagatctac agccgctcgg
     3121 gcggctacat gggcatctcg ttcgcgatcc cgatcgacga ggcgacccgg gtctcggagc
     3181 agctgcgcgt cagcgggcgc gtcatccgcg gccggatcgg cgtcgtcatc gcgcggctga
     3241 cacgcgaggt cgccgaatcg atcggcctcg gcaagccggt cggcgcgctc gtgcagtcgg
     3301 tggaagcggg cggcccggcc gagaaggcgg gcgtcgagcc gggcgacgtg atcaccaagg
     3361 tagacggtcg cacggtcgag agctcggtcg agctgccacg catcgtcggc agcatcaagc
     3421 cgggaacgaa ggcggcgctg caggtgttcc ggcgcggcag caaccgcgag ctgagcgtcg
     3481 tggtggccga gttcgagccg gagcgcgtcg tcgcccgcag ggcgcccgag cgcgacagcg
     3541 ccaagccccc gaccgtcagc agcatcggcg tcgcggtgtc agacctgacc gatgcccaga
     3601 agcgcgagct caaggtcaag aacggcgtca gagtcgaaag cgcggacggc gccgcggcac
     3661 gcgccgggat ccgcgagaac gacgtcatcc tcagcgtcga caacgttgaa gtcacgagcg
     3721 ccaagcagtt cgagacggcg cttgccaagc tcgacaaggc caagccggtc acgatcctga
     3781 tccgccaggg cgacgtcgcc aagttcgtga tcgtccggcc gttgaggcaa tagtcgtaag
     3841 cgctcgctaa caatcgggcc ttgcagatcc aaaggcgttt tccgctgctt ctattagagg
     3901 gtcgttgcgc gagcggggag aggccttcga gcggccgaaa attgccccca gggcgtccac
     3961 aaccatttgt ggacaatctg tggatagaat tcgtgttggc acgctgcaac gtagagaaat
     4021 caagccctgg cgcgccttgc gcgaggggtg ttttgactac aatgaagacc caacaagcag
     4081 ttgccatacg ttttgttgga aggcgcgtca tagattcgac gtgccttttt tttgtcttcg
     4141 gcggcgtgca tcgtcgcccc tgaaatcgcg gcgccgggtg tccttcattt gccgcgatcg
     4201 caggctgccg tcgccgacgt ccgcagttct tcgtagtccg ctgtgagcat ggatcagatc
     4261 cgcaattttt cgatcatcgc ccacatcgac catggcaaat cgaccctcgc cgatcgcctg
     4321 atccagcgct gcggcggtct ctccgaccgc gaaatggagg cgcaggtgct cgactcgatg
     4381 gacatcgagc gcgagcgcgt catcaccatc aaggcgcaga ccgcggcgct tcagtacacg
     4441 gcgcgcgacg ggcgcaccta ccagctcaac ctgatcgaca ccccgggcca cgtcgacttt
     4501 tcgtacgagg tgagccggtc gctgtcggcg tgcgagggcg cgctgctggt cgtcgacgcg
     4561 agccagggcg tcgaagcgca gaccgtcgcc aactgctaca ccgcgctcga cctcggcgtc
     4621 gaggtcgttc cggtcctgaa caagatggac ctgccgcagg ccgaccccga tcgcactcgc
     4681 gccgagatcg aggacgtgat cggcatcgac gccgacgacg ccatcccgtg cagcgccaag
     4741 accggcgagg ggatcgacga gatcctcgag gcggtcgtcc accgcatgcc ggcgccgcgc
     4801 ggcaacccgg acggcccgct gcgcgcgatg atcatcgatt cctggttcga caactacgtc
     4861 ggcgtcgtca tgctggtgcg ggtcgtcgac ggccagctcc tgcgcggcga gcgaatccgc
     4921 ctgatggcca gcgacgccgt ctacggcgcc gaccagctc
//
LOCUS       DASVHM010000833         2781 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_785984, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000833 DASVHM010000000
VERSION     DASVHM010000833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2781
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_785984"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..442)
                     /locus_tag="VF308_15285"
     CDS             complement(<1..442)
                     /locus_tag="VF308_15285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438067.1"
                     /translation="MFAAALWLLRARLRPDWFALSSGWRTRSAKASVSAKSASRPPPA
                     VRATDVESQAVLAAARVCFVDLQAAWDAGDVEALRVHTTAEMLAELLQGLPLRGPGPN
                     RTDVVTLDAALLGLERVGTRYLASVEFSGMIRESRERGAMPFKEV"
     gene            complement(640..1371)
                     /gene="ubiE"
                     /locus_tag="VF308_15290"
     CDS             complement(640..1371)
                     /gene="ubiE"
                     /locus_tag="VF308_15290"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003065997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEX7438068.1"
                     /translation="MSETHFGFETVEESAKAHRVRGVFDSVASKYDLMNDLMSLGLHR
                     AWKAYAVAVANLRAGDRVLDIAGGTGDLARAFARRVGASGMVVLSDINEAMLRQGRDR
                     LLDEGIVLPTLICDGETLPFRAESFDLVSVAFGLRNMTHKDKALAEMSRVLKPGGRLL
                     VLEFSRVAKPLAKAYDWYTFKVLPRIGQWIAGDGASYRYLAESIRQHPAQAELKAMMK
                     AAGFAHVDVHNLSAGVVALHVGIKC"
     gene            complement(1378..1794)
                     /locus_tag="VF308_15295"
     CDS             complement(1378..1794)
                     /locus_tag="VF308_15295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HEX7438069.1"
                     /translation="MAGLTSNTPLPTSITVHQQSRVLEIGFTDGSEFQIPFELMRVYS
                     PSAEVQGHGPGQEVLQTGKRSVGLTALEPIGNYAVQPTFSDGHDTGIFSWDYLYFLGS
                     QQADLWRKYEDRLEAAGANRDAPMVESGGSACGHGH"
     gene            complement(1886..>2781)
                     /locus_tag="VF308_15300"
     CDS             complement(1886..>2781)
                     /locus_tag="VF308_15300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016445668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEX7438070.1"
                     /translation="KTARALLDIEDKDYVPIIRNPQTTSADTEAVFYFPGCGSERLFS
                     QVGLATQAMLWHAGVQTVLPPGYLCCGYPQRGSGQFDKADKIITDNRVLFHRVANTLN
                     YLDIKTVVVSCGTCYDQLQGYQFEKIFPGCRIIDIHEYLLEKGITLDAASGADAGYLY
                     HDPCHSPMKLREPMQTVKALVGDNVVDAKRCCGESGTFGVTRPDIATQVRFRKEEQLR
                     QDEATLRAGSGMPAKGPLKILTSCPSCLQGLVRYTGDLNNGLLEADYIVVEMANRILG
                     VDWMPEYVARANEGGIERVLV"
BASE COUNT          467 a          925 c          940 g          449 t
ORIGIN      
        1 agacttcctt gaaaggcatg gcgccgcgtt cgcgggattc acgaatcatt ccggagaatt
       61 cgacgctcgc gaggtagcgc gtcccgaccc gttcgagccc cagcagcgcg gcatccagcg
      121 tgacgacatc ggtgcgattc ggccccggtc cgcgcaatgg caatccctgc agcagttcgg
      181 ccagcatctc ggccgtggtg tgaacgcgca gcgcctcgac atcgcccgcg tcccacgccg
      241 cctgcagatc cacgaaacag actcgcgccg cagcgagcac ggcctgcgat tcgacatcgg
      301 tcgcgcgcac cgcagggggc gggcgcgaag cgctcttcgc agataccgaa gccttcgccg
      361 agcgcgtgcg ccagccggag gacagcgcga accagtcggg gcgcaagcgg gctcgcagca
      421 accagagcgc cgccgcgaac acggtgcccg ccgcccagag ggttccggtc agcgcacccg
      481 gccactcgcg cacgaacaac atggtggcga agacggtcaa cgcgccaagc gcggtggccg
      541 aatcgcgcag cgccgctgcc gacgcatcgt ccggcgcgaa ggcgaacgaa gccgcgaatg
      601 cgacgacgat cggagcgccg aaccgctcgc gcccattgct cagcacttga tccccacgtg
      661 cagcgcgacg acgccggcgc tgaggttgtg cacatcgaca tgggcgaagc ccgcggcctt
      721 catcatggcc ttcaattcgg cctgcgccgg atgctggcgg atcgattcgg cgaggtagcg
      781 gtagctggcg ccgtcgccgg cgatccattg gccgatgcgc ggcagcacct tgaaggtgta
      841 ccaatcgtaa gccttcgcca gcggcttggc cacccgcgag aattcgagca cgagaaggcg
      901 ccctccgggc ttgaggacgc ggctcatctc ggccaacgcc ttgtccttgt gggtcatgtt
      961 gcgcaagccg aaggcgacgc tcaccagatc gaacgactcg gcgcgaaacg gcagcgtttc
     1021 cccatcgcag atcagcgtcg gcaggacgat gccctcgtcg agcaggcgat cgcgcccctg
     1081 gcgcagcatc gcctcgttga tgtcgctcag caccaccatg ccgctcgcgc cgacgcggcg
     1141 ggcgaacgca cgggccaggt cgccggtgcc gcccgcgatg tcgagcacac ggtcgccggc
     1201 gcgcaggttc gcgaccgcga ccgcataggc cttccaggcc cggtgcaggc cgagcgacat
     1261 gaggtcgttc atcaggtcgt acttcgacgc gaccgaatcg aacacgccgc gcacccggtg
     1321 cgccttggcg gactcttcca ccgtctcgaa gccgaaatgg gtctcgctca tcgcgtttca
     1381 gtgcccgtgc ccgcaggccg aaccgccgct ctcgaccatc ggcgcgtcgc gattcgcccc
     1441 cgcagcctcg aggcggtctt cgtacttgcg ccagagatcg gcctgctggg aaccgaggaa
     1501 ataaaggtag tcccaggaaa agatgccagt gtcgtggccg tcggaaaacg tcggctgcac
     1561 cgcgtagttg ccgatcggct cgagggcggt caggccgacg ctgcgcttgc cggtctgcag
     1621 cacttcctgg ccgggcccgt ggccctggac ctcggccgac ggcgaataga cgcgcatcaa
     1681 ctcgaacggg atctggaatt cggagccgtc ggtgaagccg atctccagca cgcgcgattg
     1741 ctggtggacc gtgatcgacg tgggcaacgg cgtattcgaa gtcagaccgg ccatgggctt
     1801 tcgatcgagg gtgggaggcg gcggaagtat agcgacgggg ctgcccccga gcccactggg
     1861 ggattggcgc gcgccaggaa tttgctcaca ccagcacgcg ctcgatgccg ccctcgttcg
     1921 cgcgtgccac gtattcgggc atccagtcga cgcccaggat gcggttggcc atctcgacga
     1981 cgatgtagtc ggcctcgagg aggccattgt tcaggtcgcc ggtgtagcgc acgaggcctt
     2041 gcaggcaact cgggcacgag gtgaggatct tcaggggccc cttggccggc atcccggatc
     2101 ccgcgcgcag cgtcgcctcg tcctggcgca gctgctcttc cttgcgaaag cgcacctggg
     2161 tcgcgatgtc ggggcgcgtc acgccgaagg tgccgctctc gccgcagcag cgcttggcat
     2221 cgacgacgtt gtcgccgacg agcgccttca cggtctgcat cggctcccgc agtttcatcg
     2281 ggctgtggca cgggtcgtgg tacaggtagc cggcgtcggc gccggatgcg gcatcgagcg
     2341 tgatgccttt ttcgagcagg tattcgtgga tgtcgatgat ccggcagccc gggaagatct
     2401 tctcgaactg gtagccctgg agctggtcgt agcaggtgcc gcaactcacg accacggtct
     2461 tgatgtcgag gtagttgagg gtgttggcga cgcggtggaa cagcacccgg ttgtcggtga
     2521 tgatcttgtc ggccttgtcg aactggcccg aaccgcgctg cggatagccg cagcagagat
     2581 atccgggggg caggaccgtc tgcacgccgg cgtgccagag catcgcctgg gtcgccagac
     2641 ccacctgcga gaacaggcgt tccgagccgc aacccgggaa atagaacacg gcttcggtgt
     2701 cggcgctcgt cgtctgcggg ttgcggatga tcgggacgta gtccttgtcc tcgatgtcga
     2761 gcagcgcccg cgcggtcttc t
//
LOCUS       DASVHM010000834         3168 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_567007, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000834 DASVHM010000000
VERSION     DASVHM010000834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3168
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_567007"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..818
                     /locus_tag="VF308_15305"
     CDS             <1..818
                     /locus_tag="VF308_15305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipid A biosynthesis acyltransferase"
                     /protein_id="HEX7438071.1"
                     /translation="LGRGLGRLLYAWAGARRRIALRNLALCFPEQSQAQREKLAREHF
                     LWLGRSILERGLLWYASPARLRRLIHVEGDVQLAERSERPVMWLVPHFMALDVAGVAV
                     LLFQKRKGVSIYQEQSNAVMDVALRRGRLRLGNAEIFSRTDAAKPLLRAIRRGDAFFN
                     LPDMDFGARDAAFVPFFGIPAATLLAPSRLAHAMNMVVQPVLAEILPGGQGYRVRFLA
                     PWSDFPTDDPLADTAAVNRWIEAEIRRDPAQYLWVHKRFKTRPPGEPSLYEGQ"
     gene            826..1695
                     /gene="dapF"
                     /locus_tag="VF308_15310"
     CDS             826..1695
                     /gene="dapF"
                     /locus_tag="VF308_15310"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEX7438072.1"
                     /translation="MKVRFTKMEGAGNDFVMLDATRAPLGLSDAQLRRLGDRRFGVGA
                     DQILVVEPSTTPGVDFRYRIFNGGSGDEVEQCGNGARCFLPFVRARGLTDKRALRVQT
                     RTSLLELRLQDDGRVSVDMGAPVFDLARVPFDPRGLVAKSVAGAGAEGFALWPLDVGD
                     QSVDVAVLSMGNPHAVLLVESVDSAPVESLGPSIEGDPRFPNGVNVGFMQVVARDRIR
                     LRVFERGAGETLACGTGACAAVVAGIRLGLLDKRVEVEARGGVLTIEWPGGAAPVLMT
                     GPANTVFEGEIEL"
     gene            1692..2399
                     /locus_tag="VF308_15315"
     CDS             1692..2399
                     /locus_tag="VF308_15315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 family protein"
                     /protein_id="HEX7438073.1"
                     /translation="MTITPAGTSSTGIQGITETDIANYLANSPGFFERHAELLGSVQL
                     TSPHGQRAVSLQERQMEMLRDKIKGLEQKIIEMIRHGQDNMTVADKLHRWTQALMLTA
                     NAADLPDVLVRELLDQFLIPQGAIRVWGAAEAFSSLGFARPVSDDVKSFASSLSIPYC
                     GVNSGFEAIHWLGDAAGVRSMAMIPIRDGTSPIAFGLLVLASPDPTRYTADMGTDFLE
                     RIGEIASAALSRLLPAT"
     gene            2407..>3168
                     /locus_tag="VF308_15320"
     CDS             2407..>3168
                     /locus_tag="VF308_15320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX7438074.1"
                     /translation="MAEPVPIDDDLRRHLEHLKVERRLAARTLAMYGEAFARLHAYAA
                     AAAVPLREVQTQHIRRWAAQLHAKGLAPGSIAIALSAWRGFYRWLGHAALVAVNPAAG
                     VRAPRAGKPLPKALSVDQAVALAEHRGASGNALLEARDRCIVELLYGCGLRVAELVGL
                     DVRASAAASGWIDAADASAHVLGKGSKRRSVPVGTAALQALAEWQALRGQLARAGEAA
                     LFVSRRGTRLTPSQVRTRLGARAVEAGLPTHVHPHM"
BASE COUNT          452 a         1121 c         1112 g          483 t
ORIGIN      
        1 ttctcggccg cggcctgggc cggcttctct acgcgtgggc gggggcacga cggcgcatcg
       61 cgctgcgcaa cctggcgctg tgctttcctg aacagtcgca ggcgcagcgc gaaaagctcg
      121 cgcgcgaaca cttcctgtgg ctgggtcgca gcatcctcga acgcgggctg ctctggtatg
      181 cgtcgcccgc gcggctgcgc cggctgatcc acgtcgaagg cgacgtgcag ctcgccgagc
      241 gcagcgagcg cccggtgatg tggctcgtgc cgcacttcat ggcgctcgac gtggccggcg
      301 tggcggtgct gctgttccag aagagaaagg gcgtctcgat ctaccaggag cagagcaacg
      361 cggtgatgga cgtggccttg cggcgcgggc gcctgcgcct gggcaacgcc gagatcttct
      421 cgcgcaccga tgccgccaag ccgctcctgc gcgcgatccg ccgcggcgac gcgttcttca
      481 acctgcccga catggatttt ggcgcgcgcg acgccgcctt cgtgccgttc ttcggcatcc
      541 cggccgcgac gctgctcgcc ccttcgcggc tggcgcacgc gatgaacatg gtggtgcagc
      601 cggtgctcgc cgagatcctg ccgggcggtc agggctaccg cgtgcgcttc ctcgcgccgt
      661 ggagcgactt cccgaccgac gatccgctcg ccgacacggc ggccgtgaac cgctggatcg
      721 aggccgagat ccgccgtgat ccggcgcagt acctctgggt gcacaagcgt ttcaagacgc
      781 gtccgcccgg cgagccctcg ctctacgagg gccaataatt cgtccatgaa ggtgcgattc
      841 acgaagatgg aaggggccgg caacgacttc gtgatgctcg acgccacgcg cgcgccgctc
      901 ggcttgagcg atgcgcagct gcgccggctc ggtgatcggc gtttcggcgt cggcgcggac
      961 cagatcctgg tggtcgaacc cagcaccacg cccggagtcg acttccgcta tcgcatcttc
     1021 aacggcggca gcggcgacga ggtcgagcaa tgcggcaacg gcgcgcgctg cttccttcct
     1081 ttcgtgcgcg cgcgcggcct caccgacaag cgcgcgctcc gcgtccagac ccggacgagc
     1141 ctgctcgagc tgcgcctgca ggacgacggt cgcgtcagcg tcgacatggg cgcgccggtg
     1201 ttcgatcttg cacgcgtgcc gttcgacccc agagggcttg tcgcgaagtc ggtcgcaggc
     1261 gcgggcgccg agggctttgc gctctggccg ctcgatgtcg gcgaccagag cgtcgatgtc
     1321 gcggtgctgt cgatgggcaa cccgcacgcg gtgctgctcg tcgagagcgt cgactcggcg
     1381 ccggtcgaat cgctcggacc ttcgatcgag ggcgacccgc gctttccgaa cggcgtcaac
     1441 gtcggcttca tgcaggtcgt ggcgcgcgac cgcatccgcc tgcgcgtctt cgagcgcggc
     1501 gccggcgaaa cgctcgcctg cggcaccggc gcctgcgcgg cggtggtcgc cggcattcgc
     1561 ctcggcctgc tcgacaagcg ggtcgaggtc gaggcgcgcg gcggcgtgct caccatcgag
     1621 tggcccggag gcgccgcgcc ggtactgatg accggtcccg cgaataccgt ttttgaaggg
     1681 gaaatcgaac tgtgaccatc acgccagcgg gaacatcgtc cacgggcatc cagggcatca
     1741 ccgaaaccga cattgcgaac tacctcgcca acagcccggg cttcttcgag cgccacgccg
     1801 aattgctcgg ctcggtgcag ttgaccagcc cgcacggcca gcgcgcggta tcgctgcagg
     1861 agcggcagat ggaaatgctg cgcgacaaga tcaaggggct cgagcagaag atcatcgaga
     1921 tgatccgaca cggccaggac aacatgacgg tggccgacaa gctgcaccgc tggacccagg
     1981 cgttgatgct caccgcgaac gccgccgacc tgcccgatgt gctggtgcgc gaactcctcg
     2041 accagttcct gatcccgcaa ggcgcgatcc gggtctgggg cgcggccgag gccttcagct
     2101 cgctcggctt cgcgcggccg gtcagcgacg acgtgaagag cttcgccagc agcctcagca
     2161 tcccctactg cggggtgaac tccggcttcg aggcgatcca ctggctcggc gatgcggccg
     2221 gcgtccgttc gatggcgatg atcccgatcc gcgacggcac gagcccgatc gcgttcgggc
     2281 tgctggtgct cgcgtcgccc gacccgaccc gctacaccgc cgacatgggc accgattttc
     2341 tcgagcgcat cggcgagatc gcgagcgccg cgttgtcgcg gctgctgccg gccacctagg
     2401 gcagacatgg ccgagccggt gccgatcgac gacgacctcc ggcgccatct cgagcatttg
     2461 aaggtcgagc gccggcttgc cgcacgcacg ctggcgatgt acggcgaggc cttcgcgcgc
     2521 ctgcacgcgt acgcggcggc ggcggcagtg cccttgcgcg aggtgcagac gcagcacatc
     2581 cggcgctggg ccgcgcaact gcatgcgaag gggctcgccc cgggatcgat cgcgatcgcg
     2641 ctctcggcat ggcgcggctt ctatcgctgg ctcggccacg ccgcgctcgt cgccgtgaac
     2701 cccgccgccg gcgtgcgcgc gccgagagcc ggcaagccgc tgccgaaggc cctgtcggtg
     2761 gaccaggcgg tcgcgctcgc ggagcaccgc ggcgcaagcg gcaacgcgct cctcgaagcg
     2821 cgcgaccgct gcatcgtcga actgctctat ggctgcggcc tgcgcgtcgc cgaactggtc
     2881 ggcctcgacg tgcgcgcgag cgctgcagcg tcgggctgga tcgatgccgc cgacgccagc
     2941 gcccatgtgc tcggcaaggg ctccaagcgg cgcagcgtgc cggtcggcac cgcggccttg
     3001 caggcgctgg ctgaatggca ggcgttgcgc gggcaactcg cgcgcgccgg cgaggctgcg
     3061 ctcttcgtca gtcggcgcgg cacccgcctc acgccgagcc aggtgcgcac gcgcctgggg
     3121 gcgcgcgccg tcgaggccgg cctgccgacg cacgtgcacc cgcacatg
//
LOCUS       DASVHM010000835         1549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_856232, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000835 DASVHM010000000
VERSION     DASVHM010000835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_856232"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..301
                     /locus_tag="VF308_15325"
     CDS             <1..301
                     /locus_tag="VF308_15325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEX7438075.1"
                     /translation="AMAERNRAKAALLYGCLDRSAFYRKRVVAADRSLMNVCFHLPDP
                     ALDAAFLEGARAAGLLNLKGHRIVGGFRASIYNAMPIDGVRALVRYMQAFEKRCG"
     gene            389..634
                     /locus_tag="VF308_15330"
     CDS             389..634
                     /locus_tag="VF308_15330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HEX7438076.1"
                     /translation="MEATVAERGQITLPKAVRDALGLTKGTQLKVELSGSSIILRKNV
                     DDALSRLRGRFKLPPGVSTDDVMRELRGRAPGDPVDP"
     gene            639..1061
                     /locus_tag="VF308_15335"
     CDS             639..1061
                     /locus_tag="VF308_15335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HEX7438077.1"
                     /translation="MIAVDSSVLIDLLGGDTRASASEESVRQALARGPVVVCDVVVAE
                     VVAGLGYGAELFDVLEEAGIRFSPSEARTAVRAGEMQRRYKERLKAEGRQDRSPRAVP
                     DFLIGAHALLQCNGLITRDAGFFRDYFKGLKVIVPKPA"
     gene            1091..>1549
                     /locus_tag="VF308_15340"
     CDS             1091..>1549
                     /locus_tag="VF308_15340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006298420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEX7438078.1"
                     /translation="MSHAFATTLQTFKTRSGKTGSFYSLPELQKTYPNIARLPVSMRI
                     VLESVLRNCDVKKVTPEHVVEFAGWQANAPRQDEIPFVVARVVLQDFTGVPLLADLAA
                     MRTVAKAMGKDAKSIEPLVPVDLVVDHSIMIDYFGTKKALDLNMKLEFKRN"
BASE COUNT          255 a          559 c          486 g          249 t
ORIGIN      
        1 ggcgatggcc gagcgcaacc gcgccaaggc cgccctcctc tacggctgcc tcgaccggag
       61 cgccttctac cgcaagcgcg tcgtcgccgc cgaccgctcg ctgatgaacg tctgcttcca
      121 cctgcccgac ccggcgctcg acgccgcctt cctcgagggc gcgcgcgccg ccggcctgct
      181 caacctcaag ggccaccgca tcgtcggcgg cttccgcgcc tcgatctaca acgccatgcc
      241 gatcgacggg gtgcgcgccc tggtgcggta catgcaagcg ttcgaaaagc gctgcggttg
      301 acccggcggg ggcgggttgc gcgctttcgc ttgaatatgc ctccacaagt atgtatgatt
      361 catgcatact taattggcgg agagcgtgat ggaagcgacc gttgccgagc gaggccagat
      421 cactttgccg aaggccgtgc gcgacgccct cggcctcacc aagggcaccc agctcaaggt
      481 cgagctgagc ggcagctcga tcatcctgcg caagaacgtc gacgacgccc tctcgcgcct
      541 gcgcgggcga ttcaagctgc cgcctggggt cagcaccgac gacgtcatgc gcgagctgcg
      601 cggtcgcgcg ccaggcgatc cggtcgatcc ctgagccgat gatcgcagtc gactcctcgg
      661 tgctcatcga cctgctgggc ggcgacaccc gcgcctccgc gtcggaagag agcgtgcggc
      721 aggcgctggc gcgcgggccg gtcgtcgtct gcgacgtcgt cgtcgccgaa gtcgtcgccg
      781 gcctcggcta cggcgccgag ctgttcgacg tgctcgaaga ggccgggatc cgcttctctc
      841 cctccgaggc gcgcaccgcc gttcgcgccg gcgagatgca gcgccgctac aaggagcgcc
      901 tcaaggccga gggccgccag gaccgctcgc cgcgcgcggt tcccgacttt ctcatcggcg
      961 cccacgcgct gctccagtgc aacgggctca tcacgcgcga cgccggattc ttccgcgact
     1021 acttcaaggg gctgaaggtc atcgtgccga agccggcctg accgccgggc caaaccatcc
     1081 aaggaactcc atgtcacacg ctttcgccac cacgctgcag accttcaaga cgcgctccgg
     1141 caagaccggc agcttctact ccttgcccga gctgcagaag acctacccca acatcgcccg
     1201 cctgccggtc tcgatgcgga tcgttctcga atcggtgctg cgcaactgcg acgtcaagaa
     1261 ggtgacgccc gagcacgtcg tcgagttcgc cggctggcag gcgaacgcgc cgcgccagga
     1321 cgagatcccg ttcgtcgtcg cccgcgtcgt gttgcaggat ttcaccggcg tgccgctcct
     1381 cgccgacctt gcggcgatgc gaaccgtcgc caaggcgatg ggcaaggacg cgaagtcgat
     1441 cgagccgctg gtgccggtcg acctcgtcgt cgaccactcg atcatgatcg actacttcgg
     1501 tacgaagaaa gcactcgacc tcaacatgaa gctcgagttc aagcgcaac
//
LOCUS       DASVHM010000836         3314 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_424022, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000836 DASVHM010000000
VERSION     DASVHM010000836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3314
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424022"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..304)
                     /gene="rpsB"
                     /locus_tag="VF308_15345"
     CDS             complement(<1..304)
                     /gene="rpsB"
                     /locus_tag="VF308_15345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020230245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEX7438079.1"
                     /translation="MTITMREMLEAGVHFGHQTRFWNPKMAPYIYGHRNKIHIINLEK
                     TQPLFIDAMKFIRQLASRRGTTLMIGTKRQAREVIAAEAKRCGMPFVDQRWLGGMMT"
     gene            471..1829
                     /locus_tag="VF308_15350"
     CDS             471..1829
                     /locus_tag="VF308_15350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX7438080.1"
                     /translation="MASDLIGARADIEAGRCGASELVARAIEAARGPDCRLAFLRPSF
                     DAAVQTAARIDADHRSGAALPPLAGLALSIKDLFDVQGEVTTAGSTVLEDSAPARADC
                     PAVARLRAAGAAFMGRTNMSEFAFSGVGINPHHGTPVNAATIASDPTPRVPGGSTSGG
                     ATSVASGAAWAALGSDTGGSIRIPAALQGLVGFKSTARLTPTEGAVPLSTTLDTVCAI
                     TRSVRDAVLLHEVLAARRVTLTQRPIAALKLGLPTTLMLDALEPAVASGFERAIDALR
                     RAGATVEEIVLAELGEVAGINASGGFSAAESWAWHRARLAEHEARYDPRVALRIRRGA
                     SMSAADYIDLIQARRDWIERMGRALHGFDALLSPTVPCVAPELAPLVAADATFFAANG
                     LLLRNPSVVNLLDGCSLSMPCHAGDELPAGLMLWSTALRDDTLLDAALAIEGALAASS
                     SR"
     gene            1832..3175
                     /locus_tag="VF308_15355"
     CDS             1832..3175
                     /locus_tag="VF308_15355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012747705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX7438081.1"
                     /translation="MRVAVIGAGITGVTTAYELSLEGHEVTVFERCGSVAAEASFANA
                     GLVAPGYVTPWAAPGMPAKVLRHLMSRHAPVRVHFGLSAARLAWAWNWWRACRLRTYQ
                     ANRLRMQRLAWFSRDRLREITRDLHLDYEHRMGFLVLLRTPKDLAMAQPGLTSLTTLG
                     TRFEVLDAARCRAAEPALNPATALHAGIHLPDDEVGNCRLFALLLRRHAERLGARFRF
                     HTTVQHIRPGATLVHLRAPREETVRTGAVNTDIPATDWPDTQPFTSEPVTETFDVVVV
                     CAALGALSLLRPLGIRMPLQAVYGYSVTAPLRHNDHHLDQGPRSALMDERYKVAISRL
                     GARVRVAGSAELGGSLRRHDRGALATLYKVLDDWFPGAANLDQAQHWKGARPMLPDGP
                     PVLGPSGVEGVWLNLGHGSSGWALACGSARLLADAIAGRMPPIDTEGFGLDRLRR"
BASE COUNT          456 a         1230 c         1113 g          515 t
ORIGIN      
        1 tggtcatcat gccgccgagc cagcgctggt cgacgaacgg catgccgcag cgcttggcct
       61 cggccgcgat cacctcgcgc gcctggcgct tggtgccgat catcagggtc gtgccacgcc
      121 ggctcgcgag ctggcggatg aacttcatcg cgtcgatgaa gagcggctgc gtcttctcga
      181 ggttgatgat gtggatcttg ttgcgatggc cgtagatgta cggggccatc ttggggttcc
      241 agaagcgcgt ctggtgtccg aaatggacgc cggcttccag catttcacgc atcgtgatcg
      301 tcatcgggtt tccaaaggtt ggttctagaa tccggctcga accgcagcgt tcgttccctc
      361 ggggaaatct cgctgcgaca ccttcaaaca gccggttcgc gatttgctct tccgcgctgg
      421 caaggcaacc cgccctgcca ggagaaaaac ctatcgatta tagcacccgc atggcttccg
      481 acctgatcgg cgcccgcgcc gacatcgagg ccgggcgctg cggtgcgagc gagctggtgg
      541 cccgcgcgat cgaggccgcc cgcggcccgg actgccgtct cgccttcctg cgtccgagct
      601 tcgacgccgc cgtccagacc gctgcccgga tcgatgccga ccatcgctcc ggcgccgccc
      661 tgcccccgct cgccggcctc gcgctctcga tcaaggacct gttcgacgtg cagggcgagg
      721 tcaccaccgc cggatccacg gtcctcgagg acagcgcgcc ggcacgcgcg gactgccccg
      781 cagtcgcgcg gctgcgcgcg gccggtgccg cgttcatggg ccgcaccaac atgagcgagt
      841 tcgcgttctc cggcgtcggc atcaacccgc accatggcac gcccgtcaat gccgcaacga
      901 tcgcatcgga tccgaccccg cgcgtccccg gcggctccac atcgggcggt gcgacctcgg
      961 tcgcgagcgg cgcggcctgg gccgcgttgg gctcggacac cggcggttcg atccggattc
     1021 cggccgcgtt gcagggcctc gtcggcttca agagcacggc gcggctcacg ccgaccgagg
     1081 gcgcggttcc gctttcgacg acgctcgaca ccgtgtgcgc gatcacccgc tcggtgcggg
     1141 acgcggtgct gctgcacgaa gtgctggcgg cgcggcgcgt gaccttgacc cagcggccga
     1201 tcgcggcgtt gaaactcggg ttgccgacca ccctgatgct cgacgcgctc gagccggccg
     1261 tcgcgtccgg cttcgagcgc gccatcgacg cgttgcgccg cgccggcgcg acggtcgagg
     1321 aaatcgtcct ggccgaactc ggcgaagtgg ccgggatcaa cgcgagcggc ggcttttccg
     1381 ccgccgagag ctgggcctgg catcgcgcca ggctggccga acacgaagcc cgatacgacc
     1441 cccgcgtggc gctgcgcatc cggaggggcg cgtcgatgag cgcggccgac tacatcgacc
     1501 tgatccaggc gcgccgcgac tggatcgagc gcatgggccg cgccctgcac ggcttcgacg
     1561 ccctgctcag tccgaccgtg ccgtgcgtcg cgccggagct ggcgccgctc gtcgccgccg
     1621 acgccacctt cttcgccgcc aacggcttgc tgctgcgcaa cccctccgtc gtcaacctgc
     1681 tcgacggttg ttccctttcg atgccgtgcc acgccgggga cgaactgccg gccggcctga
     1741 tgctgtggag caccgcgctg cgcgacgaca cgctgctcga cgcggcgctc gccatcgaag
     1801 gcgcgctcgc cgcatcgagt tcgcgctgag catgcgcgtc gcggtcatcg gcgcaggcat
     1861 caccggcgtc acgaccgcct acgaactcag tctcgaaggt cacgaggtca cggtgttcga
     1921 acgctgcggc agcgtcgccg ccgaggccag ctttgccaac gcgggcctgg tcgcgcccgg
     1981 ctatgtcacg ccatgggcgg cgcccggaat gcccgccaag gtgctgcgtc acctgatgag
     2041 ccggcatgcg ccggttcgcg tccacttcgg cctgagcgcg gcccggctgg cctgggcctg
     2101 gaactggtgg cgcgcgtgcc ggctacgcac ctatcaagcc aatcgcctgc gcatgcagcg
     2161 cctggcctgg ttcagccgcg accggcttcg agagattacc cgcgacctgc acctcgacta
     2221 cgagcaccgc atgggctttc tggtgctgct gcggaccccc aaggacctgg cgatggcgca
     2281 gcccggcctg acctctctga cgacgctcgg aacccgattc gaggtgctcg acgccgcccg
     2341 atgccgcgcc gccgaacccg ctctgaatcc cgcgaccgcc ttgcacgccg gcatccatct
     2401 gcccgacgac gaggtcggca actgccgcct gttcgcgctg ctgctgcgtc gccacgccga
     2461 gcggctcggc gcgcgctttc gcttccatac gacggtgcag cacatccggc ccggcgcgac
     2521 gctggttcac ctgcgtgcgc cgcgcgagga aacggtgcgc accggcgccg tgaacacgga
     2581 catccctgcg accgactggc cggatacgca gccgttcacc tccgaaccgg tcaccgagac
     2641 cttcgacgtg gtggtcgtct gcgccgcgct cggcgctctg tccttgctgc gtcccctggg
     2701 catccggatg ccgctgcagg ccgtgtacgg ctattcggta acagcgccgc tgcgccacaa
     2761 cgaccaccac ctcgaccagg gcccgcgttc ggcgctgatg gacgagcgct acaaggtcgc
     2821 gatcagccgg ctcggcgcgc gcgtgcgcgt cgccggcagc gccgaactcg gtggctcgct
     2881 gcggcgccat gatcgcggcg cgctggcgac gctctacaag gtgctcgacg actggtttcc
     2941 gggtgccgcg aacctcgatc aggcccagca ctggaaaggc gcgcggccga tgctgccgga
     3001 cggcccgccg gttctgggcc cgagcggcgt cgaaggcgtc tggctcaacc tcggccatgg
     3061 ctcgagcgga tgggcgctcg cctgcggttc ggcgcgcctg ctcgccgacg ccatcgccgg
     3121 ccgcatgccg ccgatcgaca ccgagggctt cggcctcgat cggctgcgtc gctgaggtca
     3181 gggccaccgc agcggcggac ccgcgcccgg cccgccaggc gagcacgtga cgccagaccg
     3241 tcggcgccac cagcgccagg ccgatcagcg tgctcgtcag accgggcgcc accatcagca
     3301 gcgcggcgac catg
//
LOCUS       DASVHM010000837         2290 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1290587, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000837 DASVHM010000000
VERSION     DASVHM010000837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1290587"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            45..1553
                     /locus_tag="VF308_15360"
     CDS             45..1553
                     /locus_tag="VF308_15360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indolepyruvate oxidoreductase subunit beta
                     family protein"
                     /protein_id="HEX7438082.1"
                     /translation="MTAAQPLKIAIMAMGGEGGGVLADWIVDLGERNGYLAQATSVPG
                     VAQRTGATIYYVELYPQRQAELDSGTPVLALMPLPGDVDVVLASELMECGRAVQRGLV
                     TPDRTTLIASTHRVYSIAEKSALGDGRVDSAALIAHASAAAKRFIRFDMAAAAEQTGS
                     VISAVLFGALAGTGVLPFSRAQFEATIARGGVGGAPSLKAFETAYAHAAGADAGTAAP
                     APSAPAAPSAAPLDPRVRKLLDRIDGSFPATARTMLREGVRRLIDYQDLAYAELFLDR
                     MASIAGGPRDADDRLLNETARHLALWMSYEDTIRVAALKTRGARFERVRDEVRVCDDQ
                     VLAIDEYLHPRVQEIAETLPAALGRRLERPGWPRRLVERFTRRGRIVTTSSLTGFLML
                     TAVAGMKRWRRSTTRYAAEDAAIVAWLARIAGTAKGNPELAIEVAQCQRLVKGYSDTH
                     ERGVRNFDTVMAAVQRAGATLAPATLRELREAALADEHGTMLEATLARHALV"
     gene            1610..>2290
                     /locus_tag="VF308_15365"
     CDS             1610..>2290
                     /locus_tag="VF308_15365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX7438083.1"
                     /translation="MTTSYRGDPAAVHALLQPDRVHRDLYIDPDLFALEQEHFFANTW
                     NYVGHDSQLPLPGDYIRNDIAGQPLIVVRHTDGSVRVMMNRCAHKGSRVVSAPCGNTG
                     KHFRCPYHAWTFRTDGSLLSMPLKNGYEGTDLPECEAAKGLVTVKNVRLHRGFIFAKI
                     NDVGPDFEEYFGESLSSIDNMADRSPEGRLEIAGGCLRFVHQCNWKMFVENLNDTMHP
                     MVVHESSAG"
BASE COUNT          364 a          856 c          760 g          310 t
ORIGIN      
        1 cctcgcgttc tgacgcgacc gacacgatcc gatcgagccg agccatgacc gccgcgcagc
       61 cgctgaagat cgcgatcatg gccatgggcg gcgaaggcgg cggcgtgctg gccgactgga
      121 tcgtcgatct gggcgagcgc aacggctacc tcgcgcaggc cacctccgtg ccgggtgtcg
      181 cgcagcgcac cggcgcgacc atctactacg tcgagctgta cccgcagcgc caggccgaac
      241 tcgacagcgg cacgccggtg ctggcgctga tgccgctgcc cggcgatgtc gacgtggtgc
      301 tcgcctccga gctgatggaa tgcggacgcg cggtgcagcg cggcctggtc acgccggacc
      361 ggacgaccct gatcgcatcg acgcaccgcg tctattcgat cgccgagaaa agcgcgctcg
      421 gcgacggccg cgtcgacagc gccgcgctga tcgcccacgc ctcggccgcg gcgaagcgct
      481 tcattcgctt cgacatggcc gcggccgccg aacagaccgg cagcgtcatc agcgcggtgc
      541 tgttcggagc gctcgccggc accggcgtgc tgccgttcag ccgggcccag ttcgaagcga
      601 cgatcgcgcg cggcggcgtc ggcggcgcgc cgagcctgaa ggccttcgag acggcgtatg
      661 cgcacgccgc cggcgcggac gccgggacgg ccgcacccgc gccgtctgcg ccggccgccc
      721 cttcggcggc gccgctcgac ccgcgggtac gcaaactcct cgaccgcatc gacggctcct
      781 ttcccgccac ggcgcggacg atgctgcgcg aaggcgtgcg ccgcctgatc gactaccagg
      841 acctcgccta tgccgagctc ttcctcgacc gcatggccag catcgccggc gggccgcgcg
      901 acgcggacga tcgcctcctg aacgagaccg cgcgccacct cgcgctctgg atgtcctacg
      961 aagacacgat ccgcgtcgcc gcgctgaaga cccgcggcgc gcgcttcgag cgcgtccgcg
     1021 acgaagtgcg ggtctgcgac gaccaggtgc tggcgatcga cgagtacctg cacccgcgcg
     1081 tgcaggagat cgccgagacg ctgccggccg cgctcggccg ccggctcgaa aggccgggct
     1141 ggccgcgccg actcgtcgag cgcttcaccc ggcgcgggcg catcgtcacg accagttcgc
     1201 tcaccggctt cctgatgctc accgcggtcg ccggcatgaa gcgctggcgc cgctcgacga
     1261 cgcgctacgc cgccgaggac gcggccatcg tggcctggct cgcgcgcatc gccgggacgg
     1321 cgaaggggaa cccggagctc gcgatcgaag tggcccaatg ccagcgcctc gtcaagggct
     1381 acagcgacac ccacgagcgc ggcgtgcgca acttcgacac cgtgatggcc gccgtgcagc
     1441 gggccggcgc caccctcgca ccggcgacct tgcgcgagct gcgcgaggcg gcgctcgccg
     1501 acgagcacgg cacgatgctc gaagcgacgc tggcacggca cgcgctggtc tgacgcaacg
     1561 catcgaaccg gccacgattc gaaccccgca acgcccggag acattcgaca tgaccacctc
     1621 ctaccgcggc gatccggcag ccgtccatgc gctgctccag cccgaccggg tgcaccgcga
     1681 tctctacatc gacccggacc tgttcgccct cgaacaggag catttcttcg ccaacacctg
     1741 gaactacgtc ggccacgatt cgcagctgcc gctgcccggc gactacatcc gcaacgacat
     1801 cgccggccag ccgctgatcg tggtgcgcca caccgacggc tcggtgcggg tgatgatgaa
     1861 ccgctgcgcg cacaagggtt cgcgcgtcgt cagcgcgccc tgcggcaaca ccggcaagca
     1921 cttccgctgc ccgtaccacg cctggacctt ccgcaccgac ggctcgctgc tgtcgatgcc
     1981 gttgaagaac ggctacgaag gcactgacct gcccgagtgc gaggccgcca agggtctcgt
     2041 gacggtgaag aacgtgcggc tccaccgcgg cttcatcttc gcgaagatca acgacgtcgg
     2101 ccccgacttc gaagaatatt tcggcgagtc gctgtcctcg atcgacaaca tggcggaccg
     2161 ctcgcccgag ggccggctcg agatcgccgg cgggtgcctg cgcttcgtgc accagtgcaa
     2221 ctggaagatg ttcgtcgaaa acctcaacga cacgatgcac ccgatggtgg tgcacgagtc
     2281 gtcggccggc
//
LOCUS       DASVHM010000838         2170 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_567331, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000838 DASVHM010000000
VERSION     DASVHM010000838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_567331"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..433)
                     /locus_tag="VF308_15370"
     CDS             complement(<1..433)
                     /locus_tag="VF308_15370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438084.1"
                     /translation="MKFPLRSPSQPGRLAALLALALALPVVPASAQSVSGADTKPCQS
                     SEHRQFDFWVGTWDVFATSGKKVGENRIELIADGCALLEQWTGNGGVTGKSLNIYDAI
                     DRRWHQTWVDNSGTLLMLAGRLVERSMVLSMSGPSPTDPKAT"
     gene            538..1491
                     /locus_tag="VF308_15375"
     CDS             538..1491
                     /locus_tag="VF308_15375"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEX7438085.1"
                     /translation="MRLLTYRDPDDGRPTLGVRYGQRVLEIAAAARIAGIAGMPTTLR
                     ALLAAGPNAMSRVRELSGASQAHDGGRFEAAWRDEATLEYMAPIDDADKFLCVGKNYR
                     QHLEELQRTNLIKEIPEEPTGFVKLNSSLVGHRAKVVRPEGIVRLDYEPELVFVIGRR
                     ALGVKKAEAFNYVAGVTILNDLTDRDSQEREVKSGSRFWTGKNIPGFGPLGPELITLD
                     EIADPYDLWMTCTVNGQLRMRVNTRDQIWKLPDIVEHFSRYIPIEPGDMFSTGAPGGV
                     AVGKPNAAELYLKPGDVVECGIEGFATLRTTIVAPPARKAP"
     gene            complement(1496..1972)
                     /locus_tag="VF308_15380"
     CDS             complement(1496..1972)
                     /locus_tag="VF308_15380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX7438086.1"
                     /translation="MQKITPFLWYAKEAEEAARFYASIFPDSRVVRVTAMQSESPSGP
                     PGSVKIVEFVLFGQEFTAMTAGPLDPFNHAVSFVVHCDDQAEVDRYWNALLEGGTAEQ
                     CGWLKDRFGLSWQIIPKALGTLMGDPDRAKARRASDAMMKMVKIDIAALQAAHDGR"
BASE COUNT          356 a          762 c          707 g          345 t
ORIGIN      
        1 ccgtcgcctt cgggtcggtc ggactcggcc ccgacatcga caacaccatg ctgcgttcga
       61 ccagcctgcc agcgagcatc aacagggtgc cgctgttgtc gacccaggtc tggtgccacc
      121 ggcgatcgat cgcgtcgtag atgttcaggc tcttgccggt gacgccgccg ttgccggtcc
      181 attgctcgag gagcgcgcag ccgtcggcga tgagctcgat ccggttctcg ccgaccttct
      241 tgcccgaggt cgcaaagacg tcccaggtgc cgacccagaa atcgaattgg cggtgctcgc
      301 tcgactggca aggcttggtg tcggcgccgg acaccgattg tgccgatgcc ggcacgaccg
      361 ggagtgcgag cgcaagggcc aataacgccg cgagccggcc aggctgcgaa ggcgaacgaa
      421 gcgggaactt catggcgcaa gactaaccag aaatcacccg ggcgcggcgc gttttcgctc
      481 gccgtttcgc gttccgcgac ggcgcgctta tcctccacga caccactttc gaccgccatg
      541 agactgctca cctaccgcga ccccgacgat ggccggccga cgctcggcgt ccgctacggc
      601 cagcgcgttc tcgagatcgc cgcggcggcg cgcatcgccg gcatcgccgg catgccgacg
      661 accctgaggg ccttgctcgc ggcaggaccg aacgcgatgt cgcgcgtgcg cgagctgagc
      721 ggcgcgtcgc aggcgcacga cggcggccgc ttcgaggccg cctggcgcga cgaggcgacc
      781 ctcgagtaca tggcgccgat cgacgacgcc gacaagttcc tgtgcgtcgg caagaactat
      841 cgccagcacc tcgaggagct gcagcgcacc aacctgatca aggagattcc cgaggagccg
      901 accggcttcg tcaagctcaa ctcgagcctg gtcggccacc gcgccaaggt cgtccggccc
      961 gagggcatcg tccgcctcga ctacgagccc gagctggtgt tcgtgatcgg ccggcgcgcc
     1021 ctcggcgtca agaaggccga ggccttcaac tacgtcgccg gcgtgacgat cctgaacgac
     1081 ctcaccgacc gcgattcgca ggagcgcgag gtgaagtcgg gctcgcgctt ctggaccggc
     1141 aagaacatcc cgggcttcgg cccgctcggc cccgagctga tcacgctcga cgagatcgcc
     1201 gatccctacg acctctggat gacgtgcacc gtcaacggcc agctgcgcat gcgcgtcaac
     1261 acgcgcgacc agatctggaa gctgcccgac atcgtcgagc acttctcgcg ctacatcccg
     1321 atcgagccgg gcgacatgtt ctcgaccggc gcgcccgggg gcgtcgccgt cggcaagccg
     1381 aacgcggccg agctgtacct gaagccgggc gacgtcgtcg agtgcggcat cgagggcttc
     1441 gcgacactgc gcacgacgat cgtcgcgccg ccggcgcgca aggcgccctg agccgctagc
     1501 ggccgtcgtg cgccgcctgc agcgcggcga tgtcgatctt caccatcttc atcatggcgt
     1561 ccgatgcccg cctggccttg gcgcggtcgg gatcgcccat cagcgtgccc agggccttcg
     1621 ggatgatctg ccaggacagg ccgaagcggt ctttcagcca gccgcactgc tcggccgtgc
     1681 cgccttcgag gagcgcgttc cagtagcggt cgacctcggc ctggtcgtcg cagtggacga
     1741 cgaacgagac ggcgtggttg aacgggtcga gcgggccggc ggtcatggcc gtgaactcct
     1801 gcccgaacag gacgaactcg acgatcttca ccgagcccgg cgggccgctc ggcgattcgc
     1861 tctgcatcgc cgtgacgcga acgacgcgcg aatcgggaaa tatcgaagcg tagaagcgcg
     1921 ccgcctcttc ggcctccttg gcataccaga ggaagggagt gatcttttgc atggtgtcct
     1981 cttgcgatga tggaaaaccg tggcgagacg gaagccgctt cgaggataga caagtccgcg
     2041 cccgcgccgt cgcggccgcg ggcacggcat cgctcttgcc gtaaccttgc gcgccctctt
     2101 ccgttcctgc catccatgat cactctcctc agccctgccc ggcgcacgat cgccatcgcc
     2161 ttggttgtcg
//
LOCUS       DASVHM010000839         3082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1216068, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000839 DASVHM010000000
VERSION     DASVHM010000839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3082
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1216068"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..411)
                     /locus_tag="VF308_15385"
     CDS             complement(<1..411)
                     /locus_tag="VF308_15385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006297529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX7438087.1"
                     /translation="MDDAARYTSPDVSLEFSSVGLAPSLQRAVADQGYTLMTPIQAKA
                     IPFVLAGRDIMGAAQPGTGKTAAFSLPLLHKMLPHENSSMSPARHPVRALVIAPTREL
                     ADQVAANIKGYAAHSKLRVAVVYGGIDMKPQTLEL"
     gene            511..966
                     /locus_tag="VF308_15390"
     CDS             511..966
                     /locus_tag="VF308_15390"
                     /inference="COORDINATES: protein motif:HMM:TIGR04176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family EPS-associated transcriptional
                     regulator"
                     /protein_id="HEX7438088.1"
                     /translation="MNERPPVDLVSRPAHSAPDLELLRLLERHPEYSQRQMSDALGVS
                     LGKAHYLLKALLAKGWVKAQNFTRSDHKARYLYVLTPTGVRQRAQLTRAFLARKEREY
                     DMLHAQIAALREELSGGHATLDADMSDGSPLETKAADASTAAARSTNRT"
     gene            968..2023
                     /locus_tag="VF308_15395"
     CDS             968..2023
                     /locus_tag="VF308_15395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019141887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX7438089.1"
                     /translation="MSAFGDLQLRLRNERHTWLVTGVAGFIGSNLLEALLKLDQQVVG
                     LDNFATGHERNLAEVRSVVSAEQWARFRFVQGDIRVLGDCKGVCADVEYVLHQAALGS
                     VPRSVADPVLTNSTNVTGFLNMIVAARDAGVKRFVYAASSSTYGDQPALPKVERLIGR
                     PLSPYAVTKYVNELYADVFARSYGFESIGLRYFNVFGPRQDPEGAYAAVIPKWIASML
                     RDEPVFINGDGETSRDFCFVDNAVQANLLAALTSNADAVNEVFNVAVGDRTTLNELYE
                     LLRDRLAPRFTHLRQATPTRRGFREGDVRHSLADIGKARRLLGYDPSHRVGDGLSVAM
                     EWYIGSLSRHVIDDPSV"
     gene            2168..>3082
                     /locus_tag="VF308_15400"
     CDS             2168..>3082
                     /locus_tag="VF308_15400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017454314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HEX7438090.1"
                     /translation="MNTDAKLFVSGHRGMVGSAIVRRLKARGYANLVTRTHAELDLLD
                     QRAVHAFLAKEMPDYVFMAAAKVGGIQANNDSRADFLYQNLLIEANLIHGAHEAGVQR
                     LMFLGSSCIYPRDCPQPIKEEYLLTGPLEPTNEPYAIAKIAGIKLCESYNRQFGRQYV
                     SVMPTNLYGPNDNYDLATSHVLPALIRKAHDAKARGDTEWVVWGTGTPRREFLYVDDL
                     ADACVYLMETGYDGPLVNIGTGTDVTIGELAETVMEVVGFKGRIVFDRSKPDGTPRKL
                     LDVSRLAALGWRARTALRDGIARSHADFA"
BASE COUNT          534 a         1062 c          988 g          498 t
ORIGIN      
        1 caactcgagc gtctgcggct tcatgtcaat gccgccatag accaccgcga cgcgcagctt
       61 cgaatgcgcc gcgtagccct tgatgttggc ggccacctgg tcggcgagct cgcgcgtcgg
      121 cgcgatcacc agcgcgcgca ccggatggcg cgccggcgac atgctgctgt tctcgtgcgg
      181 cagcatcttg tgcaggagcg gcagcgaaaa cgccgcggtc ttgccggtgc cgggctgcgc
      241 ggcgcccatg atgtcgcggc cggccagcac gaatgggatc gccttcgcct ggatcggcgt
      301 catcagcgtg tagccctggt cggcgacggc gcgctgcagg ctcggcgcga ggccgacgct
      361 cgagaattcg agagagacgt caggggaggt gtatcgggcg gcgtcatcca tcgcgagcgc
      421 gacgccggaa tcgttcggtt tttcggtcat ctttggatta tcgctcttcg tacaaacccg
      481 tagcgccgac tctgtagaat gctgcgttca atgaatgaac gcccgcccgt cgacttggtc
      541 agccggcccg cccacagcgc gccggacctg gaactgttgc gcctgctcga acgccacccc
      601 gagtattcgc aacgccagat gtccgacgcc ctcggcgtca gcctcggcaa ggcgcactac
      661 ctgctgaagg cattgctcgc caagggctgg gtgaaggcgc agaacttcac gcgcagcgac
      721 cacaaggcgc gctacctcta cgtcttgacg cccaccggcg tgcgccagcg tgctcagctg
      781 acacgcgcgt tcctggcgcg aaaggagcgc gagtacgaca tgctgcacgc gcagatcgcc
      841 gcgctgcgcg aagagttgag cggcggacat gcgaccctcg acgccgacat gagcgacgga
      901 tcgccgttgg agacaaaggc tgcagacgca agcaccgccg cggcccggtc gaccaatcgc
      961 acctgagatg tctgcattcg gcgacctgca actgcggctg cgcaacgagc gccacacctg
     1021 gctcgtgacc ggcgtggcgg gcttcatcgg ctcgaacctg ctcgaagccc tcctcaagct
     1081 cgaccagcaa gtggtcgggc tcgacaattt cgcgaccggc cacgagcgca acctcgccga
     1141 agtgcgctcg gtggtatcgg ccgaacagtg ggcgcggttc cggtttgtgc aaggcgatat
     1201 ccgggtgctc ggcgactgca agggcgtctg cgccgatgtg gagtacgtgc tccatcaggc
     1261 ggcgcttggc agcgtgccac gctcggtggc cgatcccgtg ctcacgaaca gcacgaacgt
     1321 caccggcttc ctgaacatga tcgtggccgc gcgcgacgct ggcgtgaagc gcttcgtcta
     1381 cgccgcttcc agctcgacct acggcgacca gccggcgctg ccgaaggtcg agcgcctcat
     1441 cggccgtccg ctgtcgccgt acgcggtgac gaagtacgtg aacgagctct acgccgacgt
     1501 gtttgcacgc agctacggct tcgagtccat cggactgcgt tacttcaacg tctttggccc
     1561 acgccaggac cccgaaggcg cctatgccgc agtcatcccg aagtggatcg cctcgatgct
     1621 gcgcgacgag ccggtcttca tcaacggcga cggcgaaacg agccgcgact tctgttttgt
     1681 cgacaacgcg gtgcaggcga acctgctggc ggcgctgacg agcaacgccg atgccgtgaa
     1741 cgaggtcttc aacgtcgccg tcggcgacag gacgacgttg aacgagttgt acgagttgtt
     1801 gcgcgaccgt ctcgccccgc gcttcacgca tttgcgccag gcgacgccga cccgcagggg
     1861 ctttcgcgaa ggcgacgtcc ggcattccct ggccgatatc ggcaaggcca ggcgactgct
     1921 gggctacgac ccttcgcacc gggttggcga cggtctctcc gtcgcgatgg agtggtacat
     1981 cgggagcctc tcgcgccacg tcatcgacga cccctccgtt tgaaatggcc tcgcccggcg
     2041 cacgcctccc tgcgagaagg accgcgccga cgctgaagta tcattcggtc cgttcaacgc
     2101 ttgaacagac cagcctttcc accgcctgcc gcccgcgcag cgagctcgaa gacaaccgct
     2161 ccgacgcatg aacaccgacg ccaagctctt cgtctcgggc caccgcggca tggtgggcag
     2221 cgccatcgtg cggcggctga aggcgcgcgg ctacgccaac ctcgtgacgc gcacgcatgc
     2281 cgagctcgac ctgctcgacc agcgcgcggt gcacgccttt ttggcgaagg aaatgccgga
     2341 ctacgtcttc atggcagcgg ccaaggtggg cggcatccag gccaacaacg actcccgcgc
     2401 cgacttcctg tatcagaacc tgctgatcga ggccaacctg atccacggcg cacacgaggc
     2461 cggcgtgcag cgcctgatgt tcctcggttc gagctgcatc tatccgcgcg actgcccgca
     2521 gccgatcaag gaggagtacc tgctcaccgg cccgctcgag ccgaccaacg agccctatgc
     2581 gatcgcgaag atcgccggca tcaagctctg cgaaagctac aaccggcagt tcgggcgcca
     2641 gtatgtcagc gtgatgccga ccaacctcta cggcccgaac gacaactacg acctcgcgac
     2701 cagccacgtg ctgcccgcgc tgatccgcaa ggcgcatgac gcgaaggcgc gcggcgacac
     2761 cgaatgggtc gtctggggca ccggcacgcc gcggcgcgag ttcctgtacg tcgacgacct
     2821 ggccgacgcc tgcgtgtacc tgatggagac cggctacgac gggccgctcg tcaatatcgg
     2881 caccggcacc gacgtgacga tcggcgagct cgccgaaacg gtgatggagg tcgtcggctt
     2941 caagggtcgc atcgtgttcg accgcagcaa gcccgacggc acgccgcgca agctcctcga
     3001 cgtgagccgc ctcgccgcgc tcggctggcg tgcccgcacg gcgctgcgcg acggcattgc
     3061 gcgctcgcat gccgactttg cg
//
LOCUS       DASVHM010000840         3602 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_278358, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000840 DASVHM010000000
VERSION     DASVHM010000840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3602
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278358"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1232)
                     /gene="aceE"
                     /locus_tag="VF308_15405"
     CDS             complement(<1..1232)
                     /gene="aceE"
                     /locus_tag="VF308_15405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013123844.1"
                     /note="E1 component; part of pyruvate dehydrogenase; forms
                     a complex with DlaT and LpdC; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HEX7438091.1"
                     /translation="MSAIPESFHGAAANDADSQETREWLDALSAVIGAEGVERAHFLL
                     EHLISHARQAGIDVPFSANTAYVNTIPTDQEERSPGNIEIEERLRAYMRWNAMAMVVK
                     ANRLHPADGGDLGGHISSFASVATMFGTGFNHFWHAATPDHGGDLLYIQGHSSPGIYA
                     RAFMEGRISEEQLLHFRQEVDGKGISSYPHPKLMPEFWQFPTVSMGLGPLMGIYQARF
                     LKYLHARGIADTEGRKVWVFCGDGEMDEPESLGAIGLAAREKLDNLIFVINCNLQRLD
                     GPVRGNGKIIQELESEFRGSGWNVIKLLWGSYWDPLLARDKDEILRKVMMDTVDGDYQ
                     AMKANDGAFVRKHFFGQDPKLLEMVAKMSDDDIWRLNRGGHDPQKVYAAFHRAANHVG
                     QPTVLLIKTVKGFGMGKSG"
     gene            1348..2859
                     /locus_tag="VF308_15410"
     CDS             1348..2859
                     /locus_tag="VF308_15410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019575803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HEX7438092.1"
                     /translation="MDAPADAAPSSARDRESRHARRAEVTAALAAALPSHAILSRAED
                     TIPYECDGLTAYRAQPLVVVLPETEAQVAAVLRICHALGVPIVARGAGTGLSGGALPH
                     RLGVTLSLAKFNRILGVDPVSCTAVVQCGVRNLAISEAAAPYGLYYAPDPSSQIACTI
                     GGNVAENSGGVHCLKYGLTLHNVLGVRGFTAAGEAVEFGSAALDVPGLDLMTVLVGSE
                     GMLAVITEVTVRLIPKPPFARCIMASFDDVESAGTAVANVIAAGIIPAGLELMDRRMT
                     AAVEAYVHAGYDLDAAAILLCESDGSAEEVEEEIGRMRALLQASGATRLEISRDEAQR
                     LKFWSGRKNAFPASGRISPDYMCMDSTIPRKRLAEILRAIGAMETRYGLRCANVFHAG
                     DGNLHPLILFDANDPDQMRRCELFGADILETSVRLGGTVTGEHGVGVEKLNSMCVQFA
                     PAERAQMVAVKRAFDPGETLNPGKVIPSLQRCAEYGKMTVLRGMLPFPELPRF"
     gene            2859..>3602
                     /gene="glcE"
                     /locus_tag="VF308_15415"
     CDS             2859..>3602
                     /gene="glcE"
                     /locus_tag="VF308_15415"
                     /EC_number="1.1.99.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycolate oxidase subunit GlcE"
                     /protein_id="HEX7438093.1"
                     /translation="MDTHAPALQRLIDQVLGARDRRAALEIRGGGTKAFYGGSPRGEP
                     LDLRPLAGISSHEPSELVVTVRGGTPLAELEAALAEHGQCLPFEPPRFAGGGSVGGMV
                     AAGLSGPARASVGGVRDYVLGATILNGRGEVLTFGGQVMKNVAGYDVSRLMAGSLGIL
                     GVICEVSLKVLPVAPAATTLVFDCDEAHALKQLAAWAGQPLPLHASAWHEGRMHLRLA
                     GADAAVRAAAAHLGGAALAPEAASAWWGSL"
BASE COUNT          534 a         1250 c         1244 g          574 t
ORIGIN      
        1 ccgctcttgc ccatgccgaa gcccttgacg gtcttgatca gcagcaccgt cggctggccc
       61 acgtggttcg cggcgcggtg gaaggccgcg tacaccttct gcgggtcgtg gccgccgcgg
      121 ttcaggcgcc agatgtcgtc gtcgctcatc ttcgcgacca tctcgagcag cttcggatcc
      181 tggccgaaga agtgcttgcg gacgaacgcg ccgtcgttgg ccttcatcgc ctggtagtcg
      241 ccgtcgaccg tgtccatcat gaccttgcgc aatatctcgt ccttgtcgcg cgccagcagc
      301 ggatcccagt agctgcccca gagcagcttg atcacgttcc agcccgagcc gcggaattcg
      361 ctttcgagct cctggatgat cttgccgttg ccgcgcaccg ggccatcgag gcgctgcagg
      421 ttgcagttga tgacgaagat caggttgtcg agcttctcgc gcgcggccag gccgatggcg
      481 ccgagcgact ccggctcgtc catttcgccg tcaccgcaga agacccagac cttgcggcct
      541 tcggtgtcgg cgatgccgcg cgcgtgcagg tacttgagaa agcgcgcctg gtagatcccc
      601 atcagcgggc cgaggcccat cgagacggtc gggaactgcc agaattcggg catcagtttc
      661 gggtgcggat agctcgagat gcccttgccg tcgacctcct ggcggaagtg caggagctgc
      721 tcctcgctga tgcgcccttc catgaaggcg cgtgcgtaga tgccgggcga ggaatggccc
      781 tggatgtaga gcaggtcgcc accgtggtcg ggcgtcgccg catgccagaa gtggttgaag
      841 ccggtgccga acatcgtcgc caccgacgcg aagctcgaga tgtggccgcc caggtcgccg
      901 ccgtcggccg ggtgcaggcg attggccttc acgaccatcg ccatcgcgtt ccagcgcatg
      961 taggcgcgca ggcgctcctc gatctcgatg ttgccgggcg agcgctcttc ctggtcggtc
     1021 gggatcgtgt tgacataggc cgtgttggcc gagaacggca cgtcgatgcc ggcctggcgc
     1081 gcgtggctga tcagatgctc gagcaggaag tgggcgcgct cgacgccctc ggcgccgatg
     1141 acggccgaca gcgcatcgag ccattcgcgg gtttcctgcg aatcggcgtc gttggcggcg
     1201 gcgccgtgaa acgattcggg gattgcagac atgaaagtct cctaggccga tagaggtttt
     1261 ttcgcgagtc tcgcacacgt cgagcctcgg caggcaacgg gcttggccat gcggtgtacc
     1321 cttcggccac atcgaaccgg cccgaccatg gacgcacctg ccgacgccgc gccttcgagc
     1381 gcacgagacc gcgaatcgcg ccacgcgcgc cgcgcggaag tgacggccgc cctggcggct
     1441 gcgctgccga gccacgcgat cctgtcgcgc gccgaggaca cgatccccta cgagtgcgac
     1501 ggcctcaccg cctaccgggc ccagccgctg gtggtggtgc tgcccgagac cgaagcgcag
     1561 gtcgccgcgg tgctgcgcat ctgtcacgcc ctgggcgtgc ccatcgtcgc gcgcggggcc
     1621 ggtacgggct tgtccggcgg cgcgctgccg caccgcctcg gcgtgacgct gtcgctcgcc
     1681 aaattcaacc ggatcctcgg cgtcgatccg gtctcgtgca cggccgtcgt gcagtgcggc
     1741 gtgcgcaacc tcgcgatcag cgaggcggca gcgccgtacg gtctctacta cgcgcccgat
     1801 ccgagcagcc agatcgcctg caccatcggc ggcaacgtgg ccgagaactc gggcggggtg
     1861 cattgcctca agtacggcct gaccctgcac aacgtgctcg gcgtgcgcgg cttcaccgcc
     1921 gccggcgaag cggtcgagtt cggctccgcg gcgctcgacg tgccgggcct cgacctgatg
     1981 accgtgctgg tgggcagcga gggcatgctc gcggtgataa ccgaagtgac ggtcaggctg
     2041 atcccgaagc cgcccttcgc gcgctgcatc atggccagct tcgacgatgt cgaatcggcc
     2101 ggcaccgcgg tcgccaacgt catcgcggcg ggcatcatcc ccgccggcct ggaactgatg
     2161 gaccggcgca tgacagcggc ggtcgaagcc tacgtgcacg ccggctacga cctcgacgcc
     2221 gcggcgatcc tgctgtgcga aagcgacggc agcgccgaag aagtcgaaga ggaaatcggc
     2281 cgtatgcgcg cgctgctgca ggcgagcggc gcgacgcgcc tcgagatcag ccgcgacgaa
     2341 gcgcagcgac tgaaattctg gagcgggcgc aagaacgcct tcccggcgtc gggccgcatc
     2401 agccccgact acatgtgcat ggactccacc atcccgcgca agcgcctggc cgagatcctg
     2461 cgcgccatcg gggcgatgga gacccgctac ggtctgcgct gcgcgaacgt gttccatgcc
     2521 ggagacggca acctgcaccc gctgatcctg ttcgatgcca acgaccccga ccagatgcgg
     2581 cgctgcgagc tgttcggcgc cgacatcctc gaaaccagcg tgcgcctcgg cggcacggtc
     2641 accggcgagc acggcgtcgg tgtcgagaag ctcaattcga tgtgcgtgca gttcgccccc
     2701 gccgaacgcg cccagatggt cgccgtcaag cgcgcattcg accccggcga gaccctcaat
     2761 ccgggcaagg tgatccccag cctgcagcgc tgcgccgaat acggaaagat gacggtgctg
     2821 cgcggcatgc tgccgtttcc agagctgccg cgcttctgat ggatacgcat gcgccggcgc
     2881 tgcagcgcct gatcgaccag gtcctcggcg cgcgcgaccg gcgtgccgcc cttgagatcc
     2941 gcggtggtgg gaccaaggcc ttctatggcg gctcgccgcg cggcgagccg ctcgatctgc
     3001 gcccgctggc cggcatcagc agccacgagc cttccgaact ggtggtgacc gtgcgcggcg
     3061 gcacacctct ggccgaactc gaagcggcgc tcgccgagca tgggcaatgc ctgcccttcg
     3121 agccgccgcg gttcgcaggc ggcggcagcg tcggcggcat ggtggccgcg ggcctgtccg
     3181 ggccggcgcg cgccagcgtc ggcggggtgc gcgactacgt gctcggtgcg acgatcctga
     3241 atggccgcgg cgaggtcctc acgttcggcg gacaggtcat gaagaacgtg gccggctacg
     3301 acgtctcgcg cctgatggcc ggctcgctcg gcatcctcgg cgtgatctgc gaggtgtcgt
     3361 tgaaggtgct gccggtggcg ccggccgcca ccaccctggt cttcgactgc gacgaggccc
     3421 acgccctgaa gcagctcgcc gcctgggcgg gccagccgct gccgctgcac gcgagcgcct
     3481 ggcacgaggg ccgcatgcac ctgcggcttg cgggcgcaga cgcggcggtg cgcgccgccg
     3541 ccgcgcacct cggcggcgcc gcactcgccc ccgaggcagc ttccgcctgg tggggcagcc
     3601 tg
//
LOCUS       DASVHM010000841         1758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_641592, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000841 DASVHM010000000
VERSION     DASVHM010000841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1758
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641592"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VF308_15420"
     CDS             <1..324
                     /locus_tag="VF308_15420"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745258.1"
                     /note="cleaves the ring of
                     2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming
                     6-hydroxy-3-hexenoyl-CoA; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA-dihydrodiol lyase"
                     /protein_id="HEX7438094.1"
                     /translation="ANGGAGQALDADAALALGLVTAAPDDIDWDDEIRIALEERAAMS
                     PDALTGLEANLRFNGKENMATRIFGRLTAWQNWIFQRPNAVGPKGALKVYGTGEKAGF
                     DFTRV"
     gene            358..>1758
                     /gene="boxB"
                     /locus_tag="VF308_15425"
     CDS             358..>1758
                     /gene="boxB"
                     /locus_tag="VF308_15425"
                     /EC_number="1.14.13.208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013538579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA];
                     GO_process: GO:0010128 - benzoate catabolic process via
                     CoA ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA 2,3-epoxidase subunit BoxB"
                     /protein_id="HEX7438095.1"
                     /translation="MSIDYSQKIPNNVNLADDRTLQRALEQWQPNFINWWDDVGPDNS
                     TNHEVYLRTATSVDPQGWAHFDYVKMRDYRWGIFLNPADAGREIHFGDHKGEKAWQDV
                     PGEHRANLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVY
                     LLQKFFGRDGREEAGALLERTSGDANNPRILGAFNEKTPDWLAFFMFTYFTDRDGKFQ
                     LAALAESAFDPLARTTKFMLTEEAHHMFVGESGVSRVIQRTAQVMNELKTDDPKKIRE
                     AGAIDLATVQRYLNFHYSVTIDLFGADQSSNAATFYSSGLKGRYEEGKRVDDHVLKGQ
                     TYKVLEVQNGQLVEKEVPMLNALNEVLRDDFIKDSVAGVGRWNKVLEKAGIPTRLVVP
                     HKAFNRRIGALAGIRMSPEGRVVSEEEWKAHEAEWLPSDADRAFVSSLMGRVVEPGKF
                     AHWIAPPAVGVNKKPVN"
BASE COUNT          331 a          623 c          568 g          236 t
ORIGIN      
        1 gcgaacggcg gcgccggcca ggcgctcgac gccgatgccg cgctcgcgct cggcctcgtc
       61 accgccgccc cggacgacat cgactgggac gacgagatcc ggatcgccct cgaggagcgc
      121 gccgcgatgt cgcccgatgc gcttaccggc ctcgaagcga acctgcgctt caacggcaag
      181 gagaacatgg cgacgcgcat cttcggccgc ctcaccgcct ggcagaactg gatcttccag
      241 cgcccgaacg cggtcggccc gaagggcgcg ctcaaggtct acggcaccgg cgagaaggcc
      301 ggcttcgatt tcacgcgcgt ctgacgacgc ccgcactccg cctcaccgag acccgccatg
      361 tccatcgact acagccagaa gatcccgaac aacgtcaacc tcgccgacga ccgcacgctg
      421 cagcgcgcgc tcgagcagtg gcagcccaat ttcatcaact ggtgggacga cgtcggcccc
      481 gacaactcga ccaaccacga ggtctatctg cgcaccgcga cgagcgtcga cccgcagggc
      541 tgggcgcact tcgactacgt gaagatgcgc gactaccgct ggggcatctt cctcaacccg
      601 gccgacgccg gccgcgagat ccacttcggc gaccacaagg gcgagaaggc atggcaggac
      661 gtgccgggcg agcaccgcgc caacctgcgc cgcatcatcg tcacgcaggg agacaccgag
      721 ccggcgtcgg tcgagcagca gcgccacctc ggcctcaccg cgccgtcgtt gtacgacctc
      781 aggaacctgt tccaggtcaa cgtcgaggag ggccgccacc tctgggcgat ggtctacctg
      841 ctgcagaagt tcttcggccg cgacggccgc gaggaggcgg gagcgctgct cgagcgcacc
      901 tcgggcgacg ccaacaaccc gcgcatcctc ggcgccttca acgagaagac gcccgactgg
      961 ctggcgttct tcatgttcac ctacttcacc gaccgcgacg gcaagttcca gctcgccgcg
     1021 ctcgcggaga gcgcgttcga cccgctggcg cgcacgacca agttcatgct caccgaggaa
     1081 gcgcaccata tgttcgtggg cgagagcggc gtgtcgcgag tcatccagcg cacggcgcag
     1141 gtgatgaacg agctcaagac cgacgacccg aagaagatcc gcgaggccgg cgcgatcgac
     1201 ctggcgacgg tccagcgcta cctcaacttc cactactcgg tgacgatcga cctcttcggc
     1261 gccgaccagt cgagcaacgc cgcgaccttc tacagctcgg gcctgaaggg ccgctacgag
     1321 gaaggcaagc gcgtcgacga ccatgtgctg aagggccaga cctacaaggt gctcgaggtc
     1381 cagaacggcc agctggtcga gaaggaagtg ccgatgctca acgccttgaa cgaggtgctg
     1441 cgcgacgact tcatcaagga ctcggtcgcc ggcgtcggcc gctggaacaa ggtcctcgag
     1501 aaggccggca tcccgacccg gctggtcgtg ccgcacaagg cattcaaccg gcgcatcggc
     1561 gcgctcgccg gcatccgcat gtcgcccgaa ggccgcgtcg tcagcgagga ggagtggaag
     1621 gcgcacgagg ccgagtggct gccgagcgac gccgaccgtg ccttcgtgtc gtcgctgatg
     1681 ggccgcgtcg tcgagcccgg caagttcgcc cactggatcg cgccgccggc ggtgggcgtc
     1741 aacaagaagc cggtgaat
//
LOCUS       DASVHM010000842         8056 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1216270, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000842 DASVHM010000000
VERSION     DASVHM010000842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 8056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8056
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1216270"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(41..529)
                     /locus_tag="VF308_15430"
     CDS             complement(41..529)
                     /locus_tag="VF308_15430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011807123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
                     /protein_id="HEX7438096.1"
                     /translation="MKRSIQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRAKVSEI
                     VLAASSCRSTISETVGNSNVTNLGATLANICPIANTKFVTSGDSAATGMITVVGNQVN
                     LSQLTAATNTLTLRPMISGAVLAAATDGGKTVEGWRCGLPADGTTILPKYLPSTCRGI
                     YP"
     gene            complement(719..1522)
                     /locus_tag="VF308_15435"
     CDS             complement(719..1522)
                     /locus_tag="VF308_15435"
                     /EC_number="3.1.4.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004114 - 3',5'-cyclic-nucleotide
                     phosphodiesterase activity [Evidence IEA];
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-nucleotide phosphodiesterase"
                     /protein_id="HEX7438097.1"
                     /translation="MIVQVLGCSGSIAAGCRTTSFLLDDDVLIDAGTGVGDMPLDALA
                     RVEHILISHSHLDHILSIGLLADSVMRERAQATRGPIQVHALPETLAALRTHIFNGVI
                     WPDFTRLPSAEHPMLSLVPFAVGDVLELNGKRVEVLDASHTVPAVGFAVDGGTSGWWV
                     YTGDTGPNPALWERLARMKVAHLVIETAFSDDERQLARISRHLCPAALGHELQHLGGS
                     VDVHITHIKPGERAAVMAEIGRLGSPHKIRALEIGDVMRLVDEPRRAYA"
     gene            complement(1721..2392)
                     /locus_tag="VF308_15440"
     CDS             complement(1721..2392)
                     /locus_tag="VF308_15440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013903080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEX7438098.1"
                     /translation="MGKLVVSLDGVVIKEVQITKDKTTLGRRPYNDIVIDNLAVSGEH
                     AVLQMVGTDVFIEDLNSTNGTYINGKAVKKQLLAHNDTVEVGKYKIKFMVDDGTDYEK
                     TMIMKPGSMAPGAGYASGRASGFGALGGAAGASVGPATIRVMNGAAAGREVVLTKVVT
                     TVGKPGVQVASITKRPTGYVLAHVEGSSRPTVNSTPLVGETVSLKNGDVIELAGTQMQ
                     FVQAA"
     gene            complement(2470..3252)
                     /locus_tag="VF308_15445"
     CDS             complement(2470..3252)
                     /locus_tag="VF308_15445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HEX7438099.1"
                     /translation="MTLEFHCASDTGRARNNNEDSAVIDEATSLVVLADGMGGYNAGE
                     VASGMCTSFIKTELGRWLAEASESATDTDVRRAMDICVDNANRAIFNAANSNPQYAGM
                     GTTLVVGVFRENRLLLGHVGDSRCYRQRSGRLVQITHDHSLLQEQIDSGLITAEQAAF
                     SSNKNLVTRAVGVEDTVLLETHLHDVMPGDLYLLCSDGLSDMIDDETISQLLQSCELL
                     PEAANALVDAANEAGGKDNISVVLVRVRGPAGAARSWWPFRR"
     gene            complement(3282..4007)
                     /locus_tag="VF308_15450"
     CDS             complement(3282..4007)
                     /locus_tag="VF308_15450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006576697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEX7438100.1"
                     /translation="MEALTSGAVWGALGAIIVANILLSGDNAVVIAMAARSLPAHQQN
                     KAIFYGSAAAIVMRILLTIGAVQMLQVPYLKIVGAVALLWIGAQLLLDTEEEGEVKEP
                     GTMAAAIRTILIADLVMSIDNVIAVAAAATRAPEAYRIALLIIGLATSIPLIIIGSTL
                     LMKIMERFPIIITLGAALLGWLAGEMLVTDPAIAAGFKANIPHADLIFGIGGALLVVA
                     IGKWLHHRGQRAEVDATMHNSSN"
     gene            complement(4039..4932)
                     /gene="sucD"
                     /locus_tag="VF308_15455"
     CDS             complement(4039..4932)
                     /gene="sucD"
                     /locus_tag="VF308_15455"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013521007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEX7438101.1"
                     /translation="MSILIDKNTRVITQGITGKTGQFHTRMCRDYANGRNCFVAGVNP
                     KKAGEDFEGIPIFATVREAAQSTGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEG
                     IPVRDMLEVRSRMRRREAAGGKKTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGVV
                     SRSGTLTYEAVAQLSDVGLGQSSAVGIGGDPINGLKHIDIMKLFNDDPGTDAVVMIGE
                     IGGSDEAEAARWCKANMTKPIVGFIAGVTAPPGKRMGHAGALISGGADTADAKLAVME
                     ECGFTVTRNPSEMGRLMKALV"
     gene            complement(4929..6104)
                     /gene="sucC"
                     /locus_tag="VF308_15460"
     CDS             complement(4929..6104)
                     /gene="sucC"
                     /locus_tag="VF308_15460"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEX7438102.1"
                     /translation="MKIHEYQGKEILARFGIPVPRGYPAFSVREATEAAQKLGGSVWV
                     VKAQIHAGGRGKGGGVKLARSQAEVATLAGQILGMQLVTHQTGPQGQKVRRLLIEEGA
                     DIKKEYYVAVLTDRATQKVAMMGSSEGGMDIEKVARDTPEKIVRVFVDPIDGMSDAAA
                     GELAAGIGIPKEAEAQAIDVFKKLYACYMETDASLAEINPLILESGKNGGPMRIKALD
                     AKFNFDSNAIYRHPEIAAYRDLDEEDPAEVAASKFDLAYIQLDGNIGCLVNGAGLAMA
                     TMDTIKLFGGSPANFLDVGGGASAEKVTEAFKIMLSNPKVKAILVNIFGGIMRCDTIA
                     EGVIAACKATNLSVPLVVRMKGTNEELGKKLLADSGLPIISADSMAEAAQKVMEALK"
     gene            complement(6255..6767)
                     /locus_tag="VF308_15465"
     CDS             complement(6255..6767)
                     /locus_tag="VF308_15465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RecX family transcriptional regulator"
                     /protein_id="HEX7438103.1"
                     /translation="MKAERSLKSRALQLLAQRDQSRLELRRKLLRHARGRDADAEVDP
                     AAVAGEVDALLDWLEANRFLSNARFAESRVNARQARFGLQRIRSELAQHAVELPPELE
                     ASLAASEIDRAAAVRARRFARLPADAAERAAQSRFLLGRGFSPEHVQRLMRRLGRPGA
                     VASDGATGAD"
     gene            complement(6778..7848)
                     /gene="recA"
                     /locus_tag="VF308_15470"
     CDS             complement(6778..7848)
                     /gene="recA"
                     /locus_tag="VF308_15470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008903814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEX7438104.1"
                     /translation="MDMPVKALNTEKAKALQAALAQIEKQHGKGAIMRLGVGEVIDDI
                     EVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDA
                     EHALDVQYAQKLGVNLQELLISQPDTGEQALEIVDALVRSGSVDLVVIDSVAALTPKA
                     EIEGEMGDSLPGLQARLMSQALRKLTGSISRTNTMVIFINQIRMKIGVMFGSPETTTG
                     GNALKFYASVRLDIRRIGSIKKGEEVIGNETKVKVVKNKVSPPFKTAEFDILYGQGIS
                     REGEVIDMGVEAKVLEKSGSWYAYNGEKIGQGKDNAREFLKENPDLAIEIENKVRAAV
                     GIPLLPGAAEEEAPAKLKVVKD"
BASE COUNT         1200 a         2650 c         2790 g         1416 t
ORIGIN      
        1 tcgccacctc gacgagggcc cgcccttaac gacgttgcgc ttacggatag atgccgcggc
       61 acgtagaagg caggtacttc ggcaggatcg tggtgccgtc ggccgggagg ccgcaacgcc
      121 aaccttcgac cgtcttgcca ccgtcggtcg ccgctgcaag gacggcaccc gagatcatcg
      181 gacgcagcgt cagggtgttc gtggcggcgg tcagctgcga caggttcacc tggttgccga
      241 cgacggtgat catgccggtg gcggccgagt cacccgaggt cacgaacttc gtgttggcga
      301 tcgggcagat gttcgccaga gtcgcgccga ggttggtgac gttcgagttg ccgaccgtct
      361 ccgagatcgt gctgcggcac gaagacgccg caagaacgat ttccgagacc ttggcacgga
      421 ccgtgtagtc ctgataggcc ggcagcgcga ccgccgccaa gatgccgatg atcgcaacca
      481 cgatcatcaa ctcgataagg gtgaaaccct tctggatgga acgcttcatg gagaactccc
      541 gtttgaagta ggggtggaaa gaccccttgt tcattgcagg gcccatgcca cgccggcccg
      601 accgaaaagc gtgaacttca tcaggccacc tgacacaaac ggtcaccaat cctgggagcg
      661 gcggctcgga tcgggtccgg cctgacgcat tccgtcacga ttaggcgtcg gccggccgtc
      721 aggcgtaggc tctccggggt tcgtcgacca ggcgcatcac gtcgccgatc tcgagggcgc
      781 ggatcttgtg cggcgagccg agccggccga tctctgccat caccgcggcg cgctcgcccg
      841 gcttgatgtg ggtgatgtgc acgtcgacgc ttccgcccag atgctgcagc tcgtgaccga
      901 gcgcggccgg gcacaaatgg cggctgatgc gggcgagctg gcgctcgtcg tcgctgaacg
      961 ccgtttcgat gacgaggtgg gcgaccttca tccgcgccag gcgctcccag agcgcggggt
     1021 tgggaccggt gtctcccgta tagacccacc agccggacgt gccgccgtcg actgcgaagc
     1081 cgaccgccgg aacggtgtgc gaggcgtcga gcacctcgac gcgtttgccg ttcagctcga
     1141 ggacgtcgcc gacggcgaac gggacgagcg agagcatcgg gtgctcggcg ctcggcaggc
     1201 gcgtgaagtc gggccagatg acgccgttga agatgtgcgt gcgcagcgcc gccagcgtct
     1261 cgggcagcgc gtgaacctgg atcggcccgc gagtcgcctg cgcccgctcg cgcatgacgc
     1321 tgtctgcgag caggccgatc gacaggatgt gatcgaggtg cgaatggctg atcaggatgt
     1381 gctcgacccg cgcgagcgca tcgagcggca tgtcgccgac gccggtgccg gcgtcgatca
     1441 ggacgtcatc gtcgaggaga aacgaggtgg tcctgcaacc tgcagcgatg gagccggagc
     1501 aaccgagtac ctggacgatc atgcgctgcc ggggaatgag ggcgccgttg cagctcggca
     1561 gcagcgggtt acggaatggg gaccgagttc ggaatgttca gccgagccgg ctttcggcac
     1621 aagcggccga tgccgcattt ggggcctggg cgagtgcctg cagccgcgcc cgggcgacag
     1681 gcgtgacatt cgtcacgcaa cccggtctca agtggccccc tcaggccgcc tgaacgaact
     1741 gcatctgcgt gccggccagc tcgatcacgt cgccgttctt caggctgacg gtctcgccga
     1801 cgagcggcgt gctgttgacc gtcggccgcg acgagccctc gacatgggcg agcacgtagc
     1861 ccgtcggccg cttggtgatg gacgcgacct ggacgccggg cttgccgacc gtcgtgacga
     1921 ccttggtgag gacgacctcg cggccggcgg cggcgccgtt catgacccgg atcgtcgccg
     1981 ggccgacgct ggcgccagcc gccccgccga gagcgccgaa cccggacgcc cggcccgacg
     2041 cgtagccggc gcccggggcc atcgagcccg gcttcatgat catcgtcttc tcatagtcgg
     2101 tgccgtcgtc gaccatgaac ttgatcttgt acttgccgac ctcgacggtg tcgttgtggg
     2161 cgagcagctg cttcttgacg gccttgccgt tgatgtaggt gccgttggtg ctgttgaggt
     2221 cttcgatgaa gacgtcggtg ccgaccatct gcaggacggc gtgctcgccg ctgacggcga
     2281 ggttgtcgat cacgatgtcg ttgtacgggc ggcggccgag cgtggtcttg tctttcgtga
     2341 tctggacttc cttgatcacg acaccatcga gcgatacgac cagtttgccc atgcttcaga
     2401 cctcgagtct cttatcttgt atgcgcggcg cccggctgaa gcgaggggcc ggcagccccc
     2461 ggcgcggcgt cagcggcgaa acggccacca cgatcgcgcg gcacccgcgg ggcccctcac
     2521 cctcacgaga acgacggaga tattatcctt tccgcctgcc tcgttggccg cgtcgaccag
     2581 cgcattggcc gcttccggca gtaattcgca actctgcaac agctggctga tcgtctcgtc
     2641 gtcgatcatg tcggagaggc cgtcggagca cagcaggtag aggtcgccgg gcatcacgtc
     2701 gtgcagatgg gtctcgagga ggacggtgtc ctcgacgccg accgcgcggg tcaccaggtt
     2761 cttgttcgac gagaacgccg cttgctcggc ggtgatcagg ccggaatcga tctgctcctg
     2821 caggagcgaa tggtcgtgcg tgatctggac cagccgcccg gagcgctgcc ggtagcagcg
     2881 cgagtcgccg acgtggccga ggaggagccg gttctcgcgg aagacgccga cgaccagcgt
     2941 cgttcccatc cccgcgtact ggggattcga gttggcggcg ttgaagatcg cccggttggc
     3001 gttgtcgacg cagatgtcca tggcgcggcg gacgtcggtg tcggtcgccg actccgacgc
     3061 ctcggcgagc cagcggccga gctcggtctt gatgaacgag gtgcacatgc cgctggcgac
     3121 ttcgccggcg ttgtagccgc ccatgccgtc ggcgaggacg accagcgagg tggcctcgtc
     3181 gatgacggcc gagtcttcgt tgttgttgcg cgcccggccg gtgtccgagg cgcaatggaa
     3241 ctcgagcgtc atcatcggca cgggggtcgg gaggcgatcg ttcaattcga cgaattgtgc
     3301 atcgtcgcat ccacctcggc gcgttggccg cggtgatgca gccacttgcc gatcgccacg
     3361 accaagagcg cgccgccgat gccgaagatg agatcggcgt gggggatgtt cgccttgaac
     3421 ccggcggcga tcgccggatc ggtgacgagc atctcgccgg ccagccagcc gagcagcgcg
     3481 gcgccgagcg tgatgatgat cgggaagcgc tccatgatct tcatcagcag cgtgctgccg
     3541 atgatgatca gcgggatcga cgtcgccagg ccgatgatca gcagcgcaat ccggtaggcc
     3601 tccggcgcgc gggtggccgc ggcggccacg gcgatgacgt tgtcgatgct catcaccagg
     3661 tcggcgatca ggatggtgcg gatcgccgcg gccatcgtcc ccggctcctt gacctcgccc
     3721 tcttcctcgg tgtcgagcag gagctgggcg ccgatccaga gcagcgcaac ggcgccgacg
     3781 atcttcaggt agggcacctg gagcatctgc acggcgccga tcgtgagcag gatccgcatc
     3841 acgatggcgg cggcgctgcc gtagaagatc gccttgttct gctgatgcgc cggcagcgac
     3901 ctggccgcca tcgcgatcac gaccgcgttg tcgcccgaga gcaggatgtt ggcgacgatg
     3961 atcgcgccca aggcacccca caccgccccc gatgtcagtg cttccatggc agctaccgac
     4021 gggaccggga cccgccgctc aaaccagagc cttcatgagg cggcccatct ccgacgggtt
     4081 gcgggtcacc gtgaagccgc actcttccat caccgcgagc ttggcgtcgg cggtatcggc
     4141 gccgccggag atcaaggcgc cggcgtggcc catccgcttg cccggcggcg cggtgacgcc
     4201 ggcgatgaag ccgacgatcg gcttggtcat gttggccttg caccagcgcg ccgcctcggc
     4261 ctcgtcggag ccgccgatct cgccgatcat gacgacggcg tcggtgcccg ggtcgtcgtt
     4321 gaagagcttc atgatgtcga tgtgcttgag gccgttgatc gggtcgccgc cgatgccgac
     4381 cgcgctcgac tggccgaggc cgacgtcgct gagctgcgcg accgcttcgt aggtgagcgt
     4441 ccccgagcgg ctgacgacgc cgatccggcc cttgcgatgg atgtggccgg gcatgatgcc
     4501 gatcttgatc tcgtcgggcg tgatcagccc ggggcagttc ggccccagca gcagcgtctt
     4561 cttgcccccc gccgcctcgc gcctgcgcat ccggctcctc acctcgagca tgtcgcgcac
     4621 cgggatgccc tcggtgatgc agatggcgag gtcgagctcg gcctcgaccg cctcccagat
     4681 cgccgcggcg gcgcctgccg gcggcacgta gatcacgctc accgtcgcgc ctgtgctctg
     4741 cgccgcttcc ctgacggtcg cgaagatcgg gatgccttcg aagtcctcgc ccgccttctt
     4801 gggattgacg ccggcgacga agcagttgcg cccgttcgcg tagtcgcggc acatgcgggt
     4861 gtggaactga ccggtcttgc cggtgatgcc ctgcgtgatg acgcgcgtgt tcttgtcgat
     4921 caggatgctc acttcagggc ctccatgacc ttctgggcgg cttcggccat cgagtcggcg
     4981 ctgatgatcg gcaggcccga gtcggcgagc agcttcttgc cgagctcctc gttcgtcccc
     5041 ttcatgcgaa cgaccagcgg cacgctcagg ttggtcgcct tgcacgccgc gatcacgccc
     5101 tcggcgatgg tgtcgcagcg catgatgccg ccgaagatgt tgaccaggat cgccttcacc
     5161 ttcgggttgc tcagcatgat cttgaacgcc tcggtgacct tctcggccga agcgccgccg
     5221 ccgacgtcga ggaagttcgc gggtgagccg ccgaacagct tgatcgtgtc catcgtcgcc
     5281 atcgccaggc cggcgccgtt gacgaggcag ccgatgttgc cgtcgagctg gatgtaggcg
     5341 aggtcgaact tgctcgccgc gacctcggcc ggatcctcct cgtcgaggtc gcggtaggcg
     5401 gcgatctcgg gatgccggta gatcgcgttc gagtcgaagt tgaacttcgc gtcgagcgcc
     5461 ttgatccgca tcggcccgcc gttcttgccg ctctcgagga tgagcgggtt gatctcggcg
     5521 agcgaggcgt cggtctccat gtagcaggcg tagagcttct tgaagacgtc gatcgcctgc
     5581 gcctcggctt ccttggggat gccgatgccg gcggcgagct cgccggcggc ggcatcgctc
     5641 atcccgtcga tcggatcgac gaacacgcgg acgatcttct cgggcgtgtc gcgggctacc
     5701 ttctcgatgt ccatgccgcc ttcgctcgac cccatcatcg ccaccttctg cgtcgcgcgg
     5761 tcggtcagca cggcgacgta gtactccttc ttgatgtcgg caccttcctc gatgaggagg
     5821 cgacgaacct tctggccctg tgggcccgtc tggtgcgtga cgagctgcat gccgaggatc
     5881 tggccggcga gcgtcgcgac ttcggcctgc gagcgcgcca gcttgacgcc gccgcccttg
     5941 ccgcggccgc cggcgtggat ctgcgccttg acgacccaga cgctcccgcc gagcttttgc
     6001 gccgcctcgg tcgcttcgcg gacgctgaag gcgggatagc cgcggggcac ggggatgccg
     6061 aaacgggcaa ggatctcctt gccctggtat tcatggattt tcatcgagac gtcggcgctg
     6121 cggtggcgga gggggagagt gcgcgtgcgg ccgcacgccc gggaaatcgc cgggaaatgt
     6181 agcacgcgac cccgtgccag ccgcccgctg gcgggcgctc gcagccggcg cgacgcgacg
     6241 cgctcgaacg cggttcagtc ggcgccggtg gcgccgtcgc tcgcgacggc gcccggtcgt
     6301 cccaggcggc gcatcaaccg ctggacgtgc tcgggcgaga agccgcgacc gagcaggaag
     6361 cgcgactgcg ccgcccgctc cgcggcgtcg gcaggcaggc gcgcgaaacg gcgcgcgcgc
     6421 acggccgcgg cccgatcgat ctcggacgcg gcgagcgacg cctcgagctc gggaggaagc
     6481 tcgacggcgt gctgcgccag ctcgctgcgg atgcgctgaa ggccgaagcg cgcctggcgc
     6541 gcattgacgc gcgattcggc gaagcgcgcg ttcgacagaa agcggttcgc ctcgagccag
     6601 tcgagcaggg cgtcgacctc gccagcgacg gcggccgggt cgacctcagc gtcggcgtct
     6661 ctcccgcgcg cgtggcgcag cagctttcgc cgcagctcga gccggctctg gtcgcgctgc
     6721 gcgagcagct gcagggcgcg cgacttgaga gatcgctccg ccttcacctc gggtcgctca
     6781 gtccttgacg accttcagct tggcgggggc ctcttcttcg gcggcgccgg gcagcaaggg
     6841 gataccgacc gcggcgcgca ccttgttctc gatctcgatc gcaaggtcgg ggttctcctt
     6901 caggaactcg cgcgcgttgt ccttgccctg gccgatcttc tcgccgttgt aggcgtacca
     6961 ggaaccgctc ttctcgagca ctttggcctc gacgcccatg tcgatcacct cgccttcgcg
     7021 gctgatgccc tggccgtaga ggatgtcgaa ctctgccgtc ttgaacggcg gcgagacctt
     7081 gttcttgacg accttgacct tggtctcgtt gccgatgacc tcctcgccct tcttgatcga
     7141 gccgatgcgg cggatgtcga ggcggaccga ggcgtagaac ttgagggcgt tgccgccggt
     7201 ggtggtctcg ggcgagccga acatgacgcc gatcttcatc cggatctggt tgatgaagat
     7261 gaccatcgtg ttggtgcgac tgatcgagcc ggtgagcttg cgcagcgcct ggctcatcag
     7321 gcgcgcctgc aggccgggca gcgaatcgcc catctcgccc tcgatctcgg ccttgggcgt
     7381 gagcgcggcg accgagtcga tgacgacgag gtcgaccgag cccgagcgga cgagcgcgtc
     7441 gacgatctcg agcgcctgct cgccggtgtc gggctgggag atcaggagct cctgcaggtt
     7501 gacgccgagc ttttgcgcgt actggacgtc gagcgcgtgc tcggcgtcga tgaaggcgca
     7561 ggtgccgccg agcttctgca tctcggcgat gacctgaagc gtgagcgtgg tcttgcccga
     7621 cgactccggc ccgtaaatct cgaccacccg gccgcgcggc aggccgccga cgccgagggc
     7681 gatgtcgagg ccgagcgagc cggtcgagac gacctcgatg tcgtcgatga cctcgccgac
     7741 gccgagccgc atgatcgcgc ccttgccgtg ctgcttctcg atctgcgcca gcgccgcctg
     7801 cagggccttg gctttttcgg tgttgagggc tttgacgggc atgtccatga aagggtctcc
     7861 tggggattcg gcgattatct gcaaaggctg gatgtttgta cagtagcaga cgcgccttcg
     7921 caacgcttcc ctccgagggg cggagcgacc gcccccgggc aggtgccccc cgggactggg
     7981 aggctccggc ggctagcgcc gccggcgcga atccgtcagc cctggacgag gcgtcggctg
     8041 cgcgcgatcg acatca
//
LOCUS       DASVHM010000843         1898 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1147029, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000843 DASVHM010000000
VERSION     DASVHM010000843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1147029"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..811)
                     /locus_tag="VF308_15475"
     CDS             complement(<1..811)
                     /locus_tag="VF308_15475"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HEX7438105.1"
                     /translation="MKPAAFEYQRAASIAEALSAMRDPALSAKPLAGGQSLGPMLNLR
                     LARPARLVDISGIEELRRIDDCGAFVRFGAAVTHARIEDEASAFAGVEPLARAARGIA
                     YRAVRNRGTIGGSLAHADPAADWPLVLAALGATIVVQGERGPRRIDAAAFMLGSYVTQ
                     LGEDELLTAVEVPKLSAGARWAYRKFCRKAGEFAQAAAAVLLDPERRVARVFIGAPAD
                     RPTSLPALAGELARRGRAALDGDRVPDLLRSVLADADPARRQAGTIMLARAI"
     gene            complement(808..>1898)
                     /locus_tag="VF308_15480"
     CDS             complement(808..>1898)
                     /locus_tag="VF308_15480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013393114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX7438106.1"
                     /translation="QWVREAIALDAIRARQARGEPDGRLIGVGFASYCEQSAHGTSVF
                     ASWGLPLVPGYDQAAVRVTPDGGLEISVGVHSHGQGMETTLAQVAHEVLGVDVSQIRV
                     VLGDTGTTPFSTGTYASRSMVMAGGAIGSACEALLPRITRIGAALLGCGEAEVRFERG
                     RVIGPAAAIGLREVAQAWYVRPERLPKDVDRGGLEASAAYRPQVDTGVFSYASHAALV
                     AVDLELGSIEILDYVVCEDCGTMVNPMVVEGQTLGGIAQGIGTALYEETPYDENGQPL
                     ASTMMDYLMPAATEVPPIRIHHFETASPYTKFGIKGMGEGGAIAPPAAIFNAVNDALR
                     AQGVEMACTPLTPARLLAALGAAEGAKR"
BASE COUNT          282 a          684 c          667 g          265 t
ORIGIN      
        1 cgatggcgcg ggccagcatg atcgtgcccg cttgcctacg cgccgggtcc gcatcggcca
       61 gcacgctgcg cagcagatcc ggcacgcgat cgccgtcgag cgccgcccgt ccgcgccggg
      121 ccagttcgcc agcgagcgca ggcagcgagg tgggccgatc ggcgggtgcg ccgatgaata
      181 cgcgcgccac gcgtcgctcg gggtcgagga gcacggctgc agccgcctgg gcgaattcgc
      241 cggctttgcg gcagaacttg cgataggccc agcgcgcccc ggccgagagc ttggggacct
      301 cgactgcggt cagcaattcg tcctcaccga gttgcgtcac atacgagccg agcatgaatg
      361 ccgccgcatc gatgcggcgc ggcccgcgct cgccctgcac cacgatcgtc gctccgaggg
      421 cagcgagcac cagaggccag tcggcggcgg gatcggcatg cgccaggctg ccgccgatgg
      481 tgccgcggtt gcgcaccgcg cggtaggcaa tgccgcgcgc cgcgcgcgcc agcggctcga
      541 cgccggcgaa ggcgctggcc tcgtcctcga tgcgcgcgtg ggtgacggcg gcgccgaagc
      601 gcacgaaggc gccgcaatcg tcgatgcggc gcagttcctc gatgccggag atgtcgacca
      661 ggcgtgctgg ccgcgctagg cgcagattca gcatgggtcc cagtgactgg ccgccggcga
      721 gcggcttggc ggacagcgcc gggtcgcgca ttgccgacag cgcctcggcg atcgaggccg
      781 cccgctggta ttcgaaggcc gcgggcttca tcgctttgcc ccctcggcag cgccgagcgc
      841 ggcgagcagc ctggccggtg tcagcggcgt gcaggccatt tcgacccctt gggcgcgcaa
      901 ggcgtcgttg accgcattga agatcgcggc cggcggggcg atcgcaccgc cctcgcccat
      961 gcccttgatc ccgaacttgg tgtagggcga cgccgtttcg aagtgatgga tgcgaatcgg
     1021 cggcacctcg gtggccgcgg gcatcaggta gtccatcatg gtcgaggcga gcggctggcc
     1081 gttttcgtcg tagggtgttt cctcgtacag cgcggtgccg attccttgcg ctatgccacc
     1141 cagcgtctgg ccctcgacca ccatcggatt gaccatggtg ccgcagtcct cgcacacgac
     1201 atagtcgagg atctcgatcg acccgagctc gagatcgacg gccacgagcg cagcgtgcga
     1261 agcgtagctg aagacgccgg tgtcgacctg gggtcgatag gccgccgacg cctccaggcc
     1321 accgcggtcg acgtccttcg gcaggcgctc gggccggacg taccaggcct gcgcgacctc
     1381 gcgcaggccg atcgcggccg cgggcccgat tacgcggccg cgctcgaagc gcacctcggc
     1441 ctcgccgcaa ccgagcagcg ccgctccgat cctggtgatg cgcggcagca aggcctcgca
     1501 ggcgctgccg atggcgcccc cggccatcac catgctgcgc gacgcatagg tgccggtcga
     1561 gaacggggtc gtgccggtgt ccccaagcac cacccgaatc tgcgacacgt cgacgccgag
     1621 cacttcgtgc gcgacctgcg ccagcgtggt ctccatgccc tggccgtgcg agtgcacgcc
     1681 gaccgagatc tccagcccgc catcgggcgt cacccgcacg gcagcctggt catagcccgg
     1741 caccagcggc agcccccagg aagcgaacac cgatgtccca tgggccgact gctcgcaata
     1801 cgaggcgaag ccgacgccga tcaggcggcc atcgggctcg ccgcgcgcct ggcgcgcgcg
     1861 gatggcatcg agcgcaatcg cctcgcgcac ccattgca
//
LOCUS       DASVHM010000844         4235 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1216338, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000844 DASVHM010000000
VERSION     DASVHM010000844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4235
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1216338"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            354..1409
                     /locus_tag="VF308_15485"
     CDS             354..1409
                     /locus_tag="VF308_15485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HEX7438107.1"
                     /translation="MPPVVDPANLYSEAGVGKLSPAVQGALARVYVPNLQSNDVYVID
                     PATYTVVDRFKVGLNPQHVVPSWDLKTLWVANNAENTTRGSLTPIDPMTGKPGPAIKV
                     DDPYNMYFTPDGKEAIVVAEAFKRLDFRDPKTMALKSSLATPQCQGINHADFSIDGRY
                     AIFTCEFGGMLAKIDLVGRKVVGYLKLSSGQMPQDIRVSPDGSTFYVADMMADGVFLI
                     DGASFKEIGFVKTGKGTHGLYPSRDGRKLYVTNRGSNKIHGAERGMGSVSVLDFATHK
                     VDVTWPIPGGGSPDMGNVSADGKQLWLSGRYDNVVYAFDTTSGAVRIIPVGKEPHGLT
                     VWPQPGRYSLGHTGNMR"
     gene            complement(1431..1862)
                     /locus_tag="VF308_15490"
     CDS             complement(1431..1862)
                     /locus_tag="VF308_15490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1841 family protein"
                     /protein_id="HEX7438108.1"
                     /translation="MFAPSQHDVREFFCTAQRKLREKQPLTPLEAIAADWIAEHPEYE
                     ADLADPDAARTAAYAVEDGRTNPFLHLSMHLSISEQVAIDQPRGISRAFELLGARLGS
                     AHAAQHEVMECLGEMIWESQRSGRPPDGERYIDCVRRRATR"
     gene            1988..2563
                     /locus_tag="VF308_15495"
     CDS             1988..2563
                     /locus_tag="VF308_15495"
                     /EC_number="1.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008918568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonic semialdehyde reductase"
                     /protein_id="HEX7438109.1"
                     /translation="MNVTTEQLFEQARTHNGFTAEAVPETTLHRLWDLLKWGPTSANC
                     SPARIKFVVSPEAKARLVACMSPGNVEKTQQAPVTAIIGMDMEFYEKLPRLFPHADAK
                     PWFAGKPEFIASTAFRNSSLQGGYLIIAARALGLDCGPMSGFDSGKVDAAFWAGTPVK
                     TNFICNLGHGEPSKVFSRSPRLAFEEACRIE"
     gene            complement(2569..>4235)
                     /gene="kefC"
                     /locus_tag="VF308_15500"
     CDS             complement(2569..>4235)
                     /gene="kefC"
                     /locus_tag="VF308_15500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008903393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015503 - glutathione-regulated potassium
                     exporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefC"
                     /protein_id="HEX7438110.1"
                     /translation="LMLFLVGLELEPDRLWALRKPIFGLGSAQLFGSAALMAALALAL
                     GVDWRLALVASFGLALSSTAIALGMLAERSLLGTTSGQSVLSVSLLQDVAAIPLLALL
                     PLLGAAGAHGSGAGWIGAAKAIGMIAAIVLGGRLLLRPALRWIARSATPEIFTAAALL
                     LVVATAALMQAVGLSMALGAFLAGVLLAESEYRRELETDIEPFKGLLLGLFFIAVGMS
                     IDFAVVIAQPFLIAAVVVGFLLLKAAVLWAMGRAMPIPKPERPVFIILLAQGGEFGFV
                     VFQTAAQAGVITAQVSSFLVAAVAVSMLLTPLLLVAADRWWIPLLAREKRTTVEELKI
                     PQSASVIIAGFGRYGQIVGRLLYANGIAPTVLDHDAEAIEALRKFGWRVHYGDATRLD
                     LLRTAGAATARVLVLAIDDADRSVEVATMVREHFPHLAIVARARNVQHYYRLHELGVR
                     MIERETLDSALMSARSALESLGWQPHQARTLALRFRRHNVEQLQAMAPHRKDEAKLIA
                     AAKQGRQQLEELFALEREQAQQRQARAGWSGSAESLSLEGETPQNP"
BASE COUNT          696 a         1458 c         1447 g          634 t
ORIGIN      
        1 catctggtgc gcgccgagcg cctgcaaaat ggcgcgccgc ccggtatcgc cgagggcgtg
       61 cacggcgatc cgcggcggtc cagcgccgcg gcaggccagg ccggggtcga cctgatcatc
      121 gcccggacca gcgaggcgat ccgccgcgac gtggcgcgcc gctgaggtgg cccggtcggc
      181 gttttcgccc cggctgcgtt gagattcgta catccatcgt tccaggagct ttcctcttga
      241 agtcgaagtc tttgaatcgc gcccgcttcg cgcggtccgc attgctcgcc tgcgtggcgg
      301 ttgcgcgcct gggcctggcc gcggcggcgc ccggcgtcga tacggtgccg ggcatgccgc
      361 cggtggtcga cccggccaac ctctacagcg aggccggcgt gggcaagctg agcccggccg
      421 tgcagggcgc cttggcgcgc gtctacgtgc cgaacctgca gtcgaacgac gtctacgtca
      481 tcgacccggc cacctacacg gtcgtcgacc gcttcaaggt cggcctgaat ccgcagcacg
      541 tcgtgccgtc gtgggacctg aagacgctct gggtcgccaa caacgccgag aacacgacgc
      601 gcggcagcct cacgccgatc gacccgatga ccggcaagcc gggcccggcg atcaaggtcg
      661 acgacccgta caacatgtat ttcacgcccg acggcaagga agcgatcgtc gtcgccgagg
      721 ccttcaagcg cctcgatttt cgtgacccga agacgatggc attgaagtcg tcgctggcca
      781 cgccccagtg tcagggcatc aaccatgccg acttttcgat cgacggtcgc tacgcgatct
      841 tcacctgcga attcggcggc atgctggcga agatcgacct ggtcgggcgc aaggtcgtcg
      901 gctacctgaa gctctccagc ggccagatgc cgcaggacat ccgcgtctcg cccgacggca
      961 gcaccttcta cgtcgccgac atgatggccg acggcgtgtt cctgatcgac ggcgcgagct
     1021 tcaaggaaat cggcttcgtc aagaccggca aaggcacgca cggcctctac ccgagccgcg
     1081 acggcaggaa gctctacgtc acgaaccggg gctcgaacaa gatccacggc gccgagcgcg
     1141 gcatgggcag cgtctcggtg ctcgatttcg cgacccacaa ggtcgacgtg acatggccga
     1201 tcccaggcgg cggcagcccc gacatgggca acgtcagcgc cgacggcaag cagctctggc
     1261 tctcgggtcg ctacgacaac gtcgtctatg ccttcgacac cacgagcggc gcggtgcgca
     1321 tcattccggt cggcaaggag ccgcatggcc tcacggtctg gccgcagccg ggccggtact
     1381 cgctcggcca caccggcaac atgcgctgat cggcgcgctt cgtggcgggt tcagcgcgtc
     1441 gcccggcgcc gcacgcaatc gatgtagcgc tcgccgtcgg gcggccggcc gctgcgctgc
     1501 gattcccaga tcatctcgcc gaggcactcc atcacctcgt gctgggcggc gtgcgccgag
     1561 ccgagccgcg cgccgagcag ctcgaacgct cggctgatgc cgcgcggctg gtcgatggcg
     1621 acctgttcgc tgatcgacag gtgcatcgag aggtgcaaga aggggttggt gcgtccgtcc
     1681 tcgaccgcgt aagcggcagt tcgggcggca tccggatcgg ccagatcggc ttcgtattcg
     1741 gggtgctcgg cgatccagtc cgccgcgatc gcctcgagcg gcgtgagcgg ctgcttttca
     1801 cggagcttcc tctgcgccgt gcagaagaat tcgcgcacgt cgtgctggga aggggcgaac
     1861 atgcgccgat tctgcatcct tcaaaagcgc tgaatgcgat cgacgaatgg ttcgagcttg
     1921 cggcccgccg ggaactcgac aatgcccctt ccgcaaccga caggccgcgt ttcgcgcgag
     1981 ctcttccatg aacgtcacca ccgaacagct cttcgaacag gcccgtaccc acaacggatt
     2041 caccgcagag gccgttcccg aaacgacgct gcaccggctc tgggacctgt tgaagtgggg
     2101 cccgacctcg gccaactgca gcccggcgcg gatcaagttc gtggtgtcgc ccgaggccaa
     2161 ggcgcgcctg gtcgcctgca tgtcgcccgg caacgtcgag aagacccagc aggcgccggt
     2221 gaccgccatc atcggcatgg acatggagtt ctacgaaaag ctgccgcgcc tctttccgca
     2281 cgcggatgcg aagccgtggt tcgccggcaa gcccgagttc atcgcctcga ccgcgtttcg
     2341 caactcgagc ctgcagggcg gctacctcat cattgcggcg cgcgccctgg gcctcgattg
     2401 cggcccgatg agcggcttcg attcaggcaa ggtcgacgcc gcgttctggg ccggcacgcc
     2461 ggtcaagacc aatttcatct gcaacctggg ccacggcgag ccgagcaagg tcttcagccg
     2521 cagcccgcgc ctcgctttcg aggaagcgtg ccggatcgag tgaactgatc aggggttctg
     2581 cggcgtctcg ccctccaggc tgagcgactc ggcgctcccg ctccagccgg cgcgcgcctg
     2641 gcgctgctgc gcctgttcgc gctccagcgc gaacagctcc tcgagctgct gccggccctg
     2701 tttggccgcg gctatcagct tggcctcgtc cttcctgtgc ggcgccatcg cctgcagctg
     2761 ctcgacgttg tggcgccgaa agcgcagcgc gagggtgcgc gcctggtgcg gctgccagcc
     2821 caggctctcg agcgcgctgc gtgcgctcat cagcgccgag tcgagcgtct cgcgctcgat
     2881 catgcggacg ccgagttcgt ggagccggta gtagtgctgc acgttgcgcg cgcgcgcgac
     2941 gatcgcgaga tgcgggaagt gctcgcgcac catcgtcgcg acctcgacgc tgcggtcggc
     3001 gtcgtcgatg gccagcacca gcacccgcgc cgtcgccgcg ccggcggtgc gcagcaggtc
     3061 gagccgggtc gcgtcgccgt agtggacgcg ccagccgaac ttgcgcagcg cctcgatcgc
     3121 ttcggcatcg tgatcgagca cggtcggggc gatgccgttc gcgtagagga ggcgcccgac
     3181 gatctggccg tagcgcccga agccggcgat gatcaccgag gcgctctgcg gaattttgag
     3241 ttcctcgacg gtcgtgcgct tctcgcgcgc cagcagaggg atccaccagc ggtcggccgc
     3301 gaccaggaga agcggcgtga gcagcatcga gacggccacc gccgcgacca ggaacgatga
     3361 cacctgcgcc gtgatgacgc ccgcctgcgc ggcggtctgg aagacgacga aaccgaattc
     3421 accgccttgc gcgagcagga tgatgaagac cggccgctcg ggcttgggga tgggcatcgc
     3481 gcggcccatc gcccacagca ccgccgcctt cagcaggagg aagccgacga ccacagccgc
     3541 gatcaggaac ggctgggcga tgacgactgc gaagtcgatg ctcatgccga ccgcgatgaa
     3601 gaagaggcca aggagcagcc ccttgaacgg ttcgatgtcg gtttcgagct cgcgccggta
     3661 ttcgctctcg gccagcagca cgccggcgag gaaggccccg agcgccatcg aaagcccgac
     3721 cgcctgcatc agggcggcgg tggcgacgac cagcagcagt gccgcggcgg tgaagatctc
     3781 gggcgtggcg ctgcgcgcga tccagcgcag ggcggggcgc agcagcaggc ggccgccgag
     3841 cacgatcgcg gcgatcatgc cgatcgcctt ggcggcgccg atccagccag cgccgctgcc
     3901 atgcgccccg gcggcgccga gcaacggcag cagcgcgagg agcgggatgg ccgccacgtc
     3961 ctgaagcagc gacacgctga ggacgctctg acccgaagtc gtgccgagca ggctgcgttc
     4021 ggccagcatg ccgagcgcga tcgccgtgga cgacagggcg aggccgaacg aggccacgag
     4081 cgcgagtcgc cagtcgacgc ccaaggcgag ggcgagggct gccatcagtg cagcggagcc
     4141 gaacagctgc gcgctgccca agccgaagat gggcttgcgc agggcccaga gccggtcggg
     4201 ctcgagttcg aggccgacca ggaacagcat cagca
//
LOCUS       DASVHM010000845         4020 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1291054, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000845 DASVHM010000000
VERSION     DASVHM010000845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4020
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1291054"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..474
                     /gene="aceE"
                     /locus_tag="VF308_15505"
     CDS             <1..474
                     /gene="aceE"
                     /locus_tag="VF308_15505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018904172.1"
                     /note="E1 component; part of pyruvate dehydrogenase; forms
                     a complex with DlaT and LpdC; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HEX7438111.1"
                     /translation="ILREVMFAAELLKNDFGIAADVWSATSFNELRRDGMAVERWNRL
                     HPTAPARLSHVEQCLEGHDGPVIAATDYMRNFADQVREQVQAAGRRFTVLGTDGFGRS
                     DYRRKLRRFFEVDRWHVAVAALKALADDGAIKPTVVAEAIAKYGLDADRAAPWTV"
     gene            483..2099
                     /gene="aceF"
                     /locus_tag="VF308_15510"
     CDS             483..2099
                     /gene="aceF"
                     /locus_tag="VF308_15510"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018904173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HEX7438112.1"
                     /translation="MSNAIDIKVPDIGDFTDVPVIEIFVKPGDTVKAEEPLVSLESDK
                     ATMDVPAPRGGTVKSVAVKVGDKVSEGSTIVVFEAEGAAATPAAAPAEPAKPSVSAPP
                     SPVSAPAGLAEVRVPDIGDFKDVPVIEIFVKVGDTVKAEDPLVSLESDKATMDVPAPL
                     SGVVKAIGVKVGDKVSEGSMILSLSTGDATAAPAAAAAVAAAGAAQPTATPAGVASVT
                     ASPAGAVDEAGFALAYAGPAVRKLARELGVDLGKVKGSGEHGRILREDVESFSKGGSP
                     AAAPTASNAAPAAGGGAGLDLLPWPKVDFAKFGSVERKEMSRIKKISAANLHRNWVVI
                     PHVTTHDEADITELEQFRVQMNKELEKSGVKISMLPFMMKAAVAALKKFPEFNASLDG
                     DALVLKNYWHIGFAADTPNGLMVPVIRDVDKKTIPDIAREMGELAKLARDGKLKPDQM
                     QGGTFTISSLGGIGGIYFTPIINAPEVSIMGVCKSYWKQHSSDGKSSSWRLTLPLSLS
                     WDHRVIDGAAAARFNVYFANVLADLRRVLF"
     gene            2113..3906
                     /gene="lpdA"
                     /locus_tag="VF308_15515"
     CDS             2113..3906
                     /gene="lpdA"
                     /locus_tag="VF308_15515"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006763927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEX7438113.1"
                     /translation="MAHLVEVKVPDIGDFKDVAVIEVLVKPGEVIAVDTALIVVESDK
                     ASMEIPSSHAGTVQALRVKLGDKVSEGSVILAVEAAGSGAPAPAPAPAPAPAPSQKAA
                     PAAAAPARSPSAAPAPTAASFAGKADVECEVLVLGAGPRGYSAAFRSADIGMKTVLVE
                     RYSTLGGVCLNVGCIPSKALLHTAAIMDEVKLLARHGIKYGAQEVDVNALRAFKDGVV
                     KKLTGGLAGMAKARKVEVVTGVGSFLDPHHLEVVGDAGVKKVVKFAKAIIAAGSQAMK
                     LPFMPDDERVVDSTGALLLEGIPQRMLVVGGGIIGLEMATVYSALGTRIDVVEMLDGL
                     MQGADRDLVKVWEKFNAPRFDTVMLKTKTVGAKATKAGIEVTFEGENAPDKAQVYDRV
                     LVAVGRSPNGRQIGAEKAGVAVTERGFIDVDRQMRTNVRHIFAIGDIVGQPMLAHKAV
                     HEGHVAAEAAHGDAAFFDARQIPSVAYTDPEVAWAGKTEEQCKAEGLKVGKAVFPWAA
                     SGRAIANGRDEGFTKLLFDDATHRVVGGGIVGTHAGDLIGEICLAVEMGCEPADIGKT
                     IHPHPTLGESIGMTAEVFEGHCTDLPPQKKK"
BASE COUNT          673 a         1345 c         1426 g          576 t
ORIGIN      
        1 atcctgcgcg aggtgatgtt cgcggcggag ctgctgaaga acgacttcgg catcgccgcc
       61 gacgtgtgga gcgcgacgag cttcaacgag ctgcgccgcg acggcatggc ggtcgagcgc
      121 tggaatcgcc tgcacccgac cgcgccggcg cgcctgagcc acgtcgagca gtgcctggaa
      181 ggccacgacg gcccggtgat cgctgccacc gattacatgc gcaatttcgc cgaccaggtg
      241 cgcgagcagg tccaggccgc gggccggcgc ttcaccgtgc tcggcaccga cggcttcggc
      301 cgcagcgact accgcaggaa gctgcgccgc ttcttcgagg tcgaccgatg gcacgtcgcc
      361 gtggcggcgc tgaaggcgct ggccgacgac ggcgcgatca agccgacggt ggtggccgag
      421 gcgatcgcga agtacggcct cgatgccgat cgtgcggctc cctggacggt gtgaggcacg
      481 acatgagcaa tgcgattgac atcaaggtgc ccgacatcgg cgacttcacc gacgtgccgg
      541 tgatcgagat cttcgtcaag cccggcgaca cggtgaaagc cgaggagccg ctggtctcgc
      601 tcgagtccga caaggcgacc atggacgtgc cggcgccgcg cggcggcacc gtgaagtcgg
      661 tcgccgtgaa ggtcggcgac aaggtcagcg aaggcagcac gatcgtcgtc ttcgaggccg
      721 aaggcgcggc ggcaacgccc gccgcggcgc ctgccgagcc ggcgaagccg agcgtgagcg
      781 ccccgccctc cccggtcagc gcgccggcgg ggctcgccga ggtgcgcgtg cccgacatcg
      841 gcgacttcaa ggacgtgccg gtgatcgaga tcttcgtcaa ggttggcgac accgtaaagg
      901 ccgaggaccc gctcgtctcg ctcgaatccg acaaggcgac gatggacgtg ccggcgccgc
      961 tgtcgggcgt cgtcaaggcc atcggcgtga aggtcggcga caaggtcagc gaaggctcga
     1021 tgatcctgtc gctgtcgacc ggggacgcca ccgcggcgcc cgccgccgcc gcggccgtgg
     1081 cggccgcggg cgccgctcag cccacggcaa cgccggctgg tgtggcgtcg gtaacggcga
     1141 gcccggccgg agcggttgac gaggccggtt tcgcgctcgc ctatgccggc ccggcggtgc
     1201 gcaagctcgc gcgcgagctc ggcgtcgatc tcggcaaggt caagggcagc ggcgagcacg
     1261 gccgcatcct gcgcgaggac gtcgagagct tctcgaaggg cggctcgccg gccgcggcac
     1321 cgacggcgtc gaacgcggcg ccggctgccg gcggcggcgc cggtctcgac ctgctgccct
     1381 ggccgaaggt cgacttcgcc aagttcggct cggtcgagcg caaggagatg tcgcggatca
     1441 agaagatctc ggccgccaac ctgcatcgca actgggtcgt gatcccgcac gtgacgacgc
     1501 acgacgaggc cgacatcacc gagctcgagc agttccgcgt gcagatgaac aaggagctcg
     1561 agaagtcggg cgtgaagatc agcatgctgc ccttcatgat gaaggcggcg gtggcggcgc
     1621 tgaagaagtt ccccgagttc aacgccagcc tcgatggcga cgcgctggtc ctgaagaact
     1681 actggcacat cggcttcgcc gccgacacgc cgaacggcct gatggtcccg gtgatccgcg
     1741 acgtcgacaa gaagacgatt cccgacatcg ccagggagat gggcgagctc gccaagctgg
     1801 cccgcgacgg caagctcaag cccgaccaga tgcagggcgg caccttcacg atcagctcgc
     1861 tcggcggcat cggcggcatc tacttcacgc cgatcatcaa cgcgcccgaa gtctcgatca
     1921 tgggcgtctg caagagctac tggaagcagc attcttctga cgggaaaagc tcgagctggc
     1981 gtttgaccct gccgctgtcg ctctcgtggg accaccgcgt gatcgacggc gccgccgcgg
     2041 cgcgcttcaa cgtctatttc gccaacgtgc tcgccgactt gcggcgtgtg ctgttctgag
     2101 ggagcgcgct cgatggccca tctggtggaa gtgaaggtgc ccgacatcgg cgacttcaag
     2161 gacgtcgcgg tgatcgaggt cctggtcaag cccggcgagg tgatcgcggt cgacaccgcg
     2221 ctgatcgtgg tcgagtcgga caaggcgtcg atggagatcc cgtcgagcca cgccggcacc
     2281 gtgcaggcgc tcagggtcaa gctcggcgac aaggtcagcg aagggtcggt gatcctcgcg
     2341 gtcgaggcgg ccggttccgg tgccccggca cccgcgcccg cgcccgcgcc cgcgcccgcg
     2401 ccctcacaga aggccgcgcc tgccgccgct gcgccggcgc gttccccctc ggcggcgccg
     2461 gcgcccaccg cagcaagctt tgccggcaag gccgacgtgg agtgcgaggt gctcgtactc
     2521 ggcgccggcc cccgcggcta ttcggccgcc ttccgcagcg ccgacatcgg catgaagacg
     2581 gtgctcgtcg agcgctattc gacgcttggc ggcgtgtgcc tcaacgtcgg ctgcatcccg
     2641 tcgaaggcgc tgctgcacac cgccgcgatc atggacgagg tcaagctgct cgcccgccac
     2701 ggcatcaagt acggcgcaca ggaagtcgac gtgaacgcgt tgcgcgcctt caaggacggc
     2761 gtcgtcaaga agctcacggg cgggctcgcc ggcatggcca aggcgcgcaa ggtcgaggtc
     2821 gtcaccggcg tgggcagctt cctcgatccg catcacctcg aggtggtcgg cgacgctggc
     2881 gtgaagaagg tcgtcaagtt cgcgaaggcc atcatcgccg ccggctcgca ggcgatgaag
     2941 ctgcctttca tgcccgacga cgagcgcgtc gtcgactcga cgggcgcatt gctgctggag
     3001 ggcatcccgc agcgcatgct cgtcgtcggc ggcgggatca tcggcctcga gatggcgacg
     3061 gtctattcgg cgctcggcac gcgcatcgac gtggtcgaga tgctcgacgg cctgatgcag
     3121 ggcgccgacc gagacctcgt gaaggtgtgg gagaagttca acgcgccgcg cttcgacacg
     3181 gtcatgctga agacgaagac cgttggcgcg aaggcgacca aggccggcat cgaggtcacc
     3241 ttcgaaggcg agaacgcccc cgacaaggcg caggtctacg accgggtgct ggtggcggtc
     3301 ggtcgcagcc cgaacggcag gcagatcggt gccgagaagg ccggcgtcgc cgtcaccgag
     3361 cgcggcttca tcgacgtcga ccggcagatg cgaacgaacg tgcggcatat cttcgccatc
     3421 ggcgacatcg tcggccagcc gatgctcgcg cacaaggcgg ttcacgaggg acacgtcgcc
     3481 gccgaggcgg cgcacggcga tgcggcgttc ttcgacgcgc gccagatccc gtcggtcgcc
     3541 tacaccgatc cggaagtcgc ctgggccggc aagaccgaag agcagtgcaa ggccgagggc
     3601 ctcaaggtgg gcaaggcggt ctttccgtgg gctgcgtccg gccgcgcgat cgccaacggt
     3661 cgcgacgagg gcttcaccaa gctgctgttc gacgacgcga cccaccgcgt tgtcggcggc
     3721 ggcatcgtcg gcacgcatgc gggcgacttg atcggcgaga tctgcctcgc ggtcgagatg
     3781 ggctgcgagc cggccgacat cggcaagacc atccaccccc atccgaccct cggcgaatcg
     3841 attggcatga cggcggaggt cttcgaaggc cactgcaccg acctgccgcc gcagaagaag
     3901 aagtaggact tgccgtggcc ctgaacctgg cttgcgaaag caccggcagc ggaccgccgc
     3961 tggtggtgct gcacggcctc ttcggatcga gcggcaactg gtgcggcatc gcacgcgagc
//
LOCUS       DASVHM010000846         2203 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_641953, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000846 DASVHM010000000
VERSION     DASVHM010000846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2203
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641953"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..984
                     /locus_tag="VF308_15520"
     CDS             <1..984
                     /locus_tag="VF308_15520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX7438114.1"
                     /translation="TEGSDVKAGQRLFEIDAAPYQAALASTQATLARAQANLTQATAQ
                     AERYKPLLEANAISKQDYINAVAAQKQAEADVAAGEAAVQTGQINLGYAFVTAPISGR
                     IGRALVTEGALVGQGEATPLAVVQQINPMYVNFTQSTTDVLKLRRALESGKYKRASGP
                     NSAGVQVLLEDGSEYPQSGRLLFSDLSVDPTSGQITLRAEVPNPSGILLPGMYVRVRL
                     EQAETSNGIVLPQQAVTRGSSGDTVMVVGADGKVAPRPVKIGAAVGGQWVVLEGLAAG
                     EQVMVDGFQKLRGSAPVKPVPWQPGASGAGPSSAAPAAATASAAAPAASGR"
     gene            997..>2203
                     /locus_tag="VF308_15525"
     CDS             997..>2203
                     /locus_tag="VF308_15525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007837379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7438115.1"
                     /translation="MAQFFIDRPIFAWVIALFILVLGGVAIRQLPIAQYPTVAPPSII
                     LTAVYPGASAQTLEDSVIGVIEQEMNGSPGLIYMESVSQANGVGSITLTFETGTSPDL
                     AQVDVQNRLSRAAPRLPAAVTQQGVRVDKARSNFLLFTILSSDNPAFDPIALGDYASR
                     TVLPEIQRLPGVGQAQLFGTERAMRIWIDPAKLVGFNLSSNDVVNAIRAQNAQVSSGT
                     LGDLPLVAGQPISATVVVAGQLTTVEQFGGVVLRANTDGSIVKLADVARIELGGQSYS
                     TVARLNGKPSTGIGVQLSPTGNALATAELVRARMTELARYFPQGVKWDIPYDSSRFVK
                     ISISRVVETLVEAVILVFLVMYLFLQSLRYTLIPTIVVPVALFGAFGMMMAFGYTINV
                     LTMFAMVLAV"
BASE COUNT          343 a          775 c          758 g          327 t
ORIGIN      
        1 accgaaggca gcgacgtgaa agcggggcag cgattgttcg aaatcgatgc ggctccgtac
       61 caggccgcgc tcgcgagcac gcaggccacg ctcgcgcgcg cgcaggccaa cctgacgcag
      121 gcgacggcgc aggccgagcg ctacaagccg ctgctcgaag ccaacgcgat cagcaagcag
      181 gactacatca acgcggtcgc ggcgcaaaaa caggccgagg ccgacgtcgc tgccggcgag
      241 gccgcggtcc agaccgggca gatcaacctc ggctatgcct tcgtgaccgc gccgatctcg
      301 ggccgcatcg gccgcgccct ggtcaccgag ggggcactcg tcggccaagg cgaagcgacg
      361 ccgctcgcgg tggtccagca gatcaacccg atgtatgtga acttcaccca gtcgaccacc
      421 gacgtgctca agctgcggcg ggcgctcgag agcggaaagt acaagcgcgc cagcgggccg
      481 aattcggccg gcgtgcaggt gctgctcgaa gacggcagcg aataccccca gtcgggcagg
      541 cttctttttt ccgatctcag cgtcgacccc acgtcgggcc agatcacgct gcgcgccgaa
      601 gtgccgaacc cgagcggcat cctgctgccg ggcatgtacg tgcgggtgcg cctcgagcag
      661 gccgaaacca gcaacggcat cgtgctgccg cagcaggccg tgacgcgcgg ctcgagcggc
      721 gacacggtga tggtggtcgg cgccgacggc aaggtcgcgc cgcgcccggt gaagatcggc
      781 gccgcggtcg gcggccaatg ggtcgtgctc gaaggcctgg cggcgggcga gcaggtcatg
      841 gtcgatggct tccagaagct gcgcggcagc gcgccggtca agccggtgcc ctggcagccg
      901 ggcgcttcgg gcgccggacc ttcctctgcc gccccggcgg ccgcgaccgc gagcgccgcg
      961 gcccccgcgg cctccggccg ctgaggggcc gacgccatgg cccagttctt catcgatcgg
     1021 cccatcttcg cgtgggtgat cgcgctcttc atcctcgtgc tcgggggcgt cgcgatccgg
     1081 cagctgccga tcgcccagta cccgacggtg gcgccgccgt cgatcattct cacggcggtc
     1141 tatccgggcg cctcggcgca gaccctcgag gacagcgtga tcggcgtcat cgagcaggag
     1201 atgaacggct cgcccgggct gatctacatg gagtcggtga gccaggccaa cggcgtcggc
     1261 tcgatcacgt tgaccttcga gacgggcacg agccccgatc tggcccaggt cgatgtgcag
     1321 aaccggcttt cgcgcgcggc gccgcgcctg cccgccgcgg tgacgcagca gggcgtgcgc
     1381 gtcgacaagg cgcgttccaa cttcctgctc ttcacgatcc tctcgtcgga caacccggcc
     1441 ttcgacccga tcgccctcgg cgactacgcg tcgcgcacgg tgctgccgga aatccagcgc
     1501 ctacccggcg tcggccaggc gcagctgttc ggcaccgagc gcgcgatgcg catctggatc
     1561 gacccggcca agctggtcgg cttcaacctc tcgagcaacg acgtggtcaa cgcgatccgg
     1621 gcgcagaacg cgcaggtctc gtcgggcacg ctcggcgacc tgccgctcgt ggcgggccag
     1681 ccgatcagcg cgaccgtcgt cgtcgccggc cagctgacga cggtcgagca attcggcggg
     1741 gtcgtgctgc gcgccaacac cgacggctcc atcgtcaagc tcgccgacgt cgcccggatc
     1801 gagctcggcg ggcagagtta cagcaccgtg gcgcgcctca acggcaagcc ttcgaccggc
     1861 atcggcgtcc agctctcgcc gaccggcaac gcgctcgcca cggccgagct cgtgcgcgcc
     1921 cggatgaccg agctcgcgcg ctatttcccg cagggcgtga agtgggacat cccgtacgac
     1981 agctcgcgct tcgtgaagat ctcgatcagc cgggtggtcg agacgctggt cgaggcggtg
     2041 atcctcgtct tcctggtgat gtacctcttc ctgcagagcc tgcgctacac gctgatcccg
     2101 acgatcgtcg tgccggtcgc gctgttcggc gcgttcggga tgatgatggc gttcggctac
     2161 acgatcaacg tgctgacgat gttcgcgatg gtgctcgcgg tcg
//
LOCUS       DASVHM010000847         3067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_713687, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000847 DASVHM010000000
VERSION     DASVHM010000847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3067
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_713687"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..436)
                     /locus_tag="VF308_15530"
     CDS             complement(<1..436)
                     /locus_tag="VF308_15530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013721506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HEX7438116.1"
                     /translation="MKALHELAATELVALYRKRELSPVEATQAVLGRIAAWEPRLCAT
                     YALDPESALAAARASEARWLKGEPLGAIDGVPSMIKENIATRGTPIPVGTAATVLVPA
                     ANDAPPAARMRESGAVILGKTTMPDYGMLSSGLSSFHALARNP"
     gene            complement(501..2000)
                     /locus_tag="VF308_15535"
     CDS             complement(501..2000)
                     /locus_tag="VF308_15535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7438117.1"
                     /translation="MMNSRTRFFAIAALAALVALPLGVAAQARNDSLVLGMVLEPPAL
                     DPTTAPAAAIGEIVHYNVLEGLTKINMDGSIVPLLAESWSIDPDGKVYTFRLKKGVKY
                     HDGEAFDSSDVKFSFERAKATTSTNKAKKAVFDNISRIETPDPYTVLLVLNQADGNFL
                     FRLGENTAVILDPKSAATATTRPIGTGPFKFDSWAKGSSLTLVKNEGFRNAAAIKLNK
                     VTFRFINDPAAQVAALLAGDIDGMPRFGALESLKQFQSDPRFTVTLGGTEGKTIVSIN
                     NKKKPFDDVRVRRAIAMAVDRKAVIDGAMEGYGKPIGSHMVPSDAGYVDLTAVNAYNP
                     EKAKALLKEAGIATPLNVTLTLPPPQYARKGGEIVAAQLAKVGTNAKIENVEWAQWLS
                     GAYKGNFDLTIISHVEPLDFITVYADPNYYIGYDSKAFRDLVAAYNSSADTKGRLKLL
                     GDIQRQLATDSVNAYLFQLPQFAVGNKKLKGMWSSSPIFGNDLAALTWQ"
     gene            complement(1997..3019)
                     /locus_tag="VF308_15540"
     CDS             complement(1997..3019)
                     /locus_tag="VF308_15540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010461889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HEX7438118.1"
                     /translation="MSYAPLLAVDALVRHYLLPRERLFEPAPRVEALRGVSFSMQAGT
                     SLGLVGESGSGKSTLARLVMALERPTSGRVTLLGRDLNALAPGELRAARRDFQMVFQD
                     PYGSLDPRQRVGRIVAEPLAAMPVADARSRVAESLDAVGLRGADADRYPHEFSGGQRQ
                     RIAIARALITRPRLIVADEPVSALDVSVQAQVLNLLLDLQQQFGVTYLLISHDIAVVD
                     HICAEVAVLYAGRIVEQGSPEVLFRAAAHPYTRALMEAVPQAGVPAPRSRRSATAARP
                     GSSSKVTHEGPPGGGCSFAPRCRFRQVLCSEQAPALRTVAGAHLAACHFAEQVIVEGN
                     PERGPT"
BASE COUNT          437 a         1019 c         1093 g          518 t
ORIGIN      
        1 aggggttgcg cgccagcgca tgaaaactcg acagccccga cgacagcatt ccgtagtcgg
       61 gcatcgtcgt cttgccgagg atcaccgcgc cggactcgcg catgcgcgcc gcgggcggcg
      121 cgtcgttcgc ggccggtacc agcacggtcg ccgccgtgcc gaccgggatc ggcgtgccgc
      181 gcgtcgcgat gttctccttg atcatcgacg gcacgccgtc gatcgcgccg agcggctcgc
      241 ccttcaacca gcgcgcctcc gacgcgcgcg ctgcggcgag cgcgctttcg gggtcgagcg
      301 cgtaggtcgc gcacagtcgc ggctcccacg cagcgatccg gccgagcacg gcctgcgtcg
      361 cctcgaccgg cgagagctcg cgcttgcgat agagcgcgac cagctcggtc gcggccagct
      421 cgtgcagcgc cttcatcccg tgcttcgctc gccctcaccc cggccctctc ccgccagcgg
      481 gagagggaga gggaggcggg ctactgccac gtcagtgcgg cgaggtcgtt gccgaagatc
      541 ggcgagctgc tccacatgcc cttcagcttc ttgttgccga ccgcgaattg cggcagctgg
      601 aacaggtagg cgttgacgct gtcggtcgcg agctggcgct ggatgtcgcc gagcagcttg
      661 agccggccct tggtgtcggc gctcgagttg tacgcggcga cgagatcgcg gaaggccttc
      721 gagtcgtagc cgatgtagta gttcggatcg gcgtagacgg tgatgaaatc gagcggctcg
      781 acgtggctga tgatggtcag gtcgaagttg cccttgtacg cgccggagag ccactgggcc
      841 cactcgacgt tctcgatctt cgcgttggtg ccgaccttgg cgagctgcgc cgcgacgatt
      901 tcgccgccct tgcgcgcgta ctgcggcggc ggaagcgtca aggtcacgtt gagcggcgtc
      961 gcgatgcccg cctccttgag gagcgccttc gccttctccg ggttgtaggc gttcaccgcg
     1021 gtcaggtcga catagccggc gtcgctcggc accatgtggc tgccgatcgg cttgccgtag
     1081 ccttccatgg cgccgtcgat cacggccttg cggtcgaccg ccatggcgat ggcgcggcgc
     1141 acgcgcacgt cgtcgaacgg cttcttcttg ttgttgatgc tgacgatggt cttgccttcg
     1201 gtgccgccga gcgtgaccgt gaagcgcggg tcgctctgga actgcttcag gctttcgagc
     1261 gcgccgaagc gcggcatgcc gtcgatgtcg ccggcgagca gagccgcgac ctgcgcggcc
     1321 gggtcgttga tgaagcggaa cgtcaccttg ttgagcttga tcgcggcggc gttgcggaag
     1381 ccctcgttct tcaccagcgt cagcgacgaa cccttggccc acgagtcgaa cttgaagggg
     1441 ccggtgccga tcggccgggt ggtggctgtc gctgcgctct tcgggtcgag gatcaccgcg
     1501 gtgttttcgc cgaggcgaaa caggaagttg ccgtcggcct ggttgagcac cagcagcacc
     1561 gtgtacggat cgggcgtctc gatgcggctg atgttgtcga agaccgcctt tttcgccttg
     1621 ttggtcgagg ttgtggcctt ggcgcgctcg aagctgaact tcacgtcgct cgaatcgaag
     1681 gcctcgccgt cgtgatactt cacgcccttt ttcagccgga aggtgtagac cttgccgtcc
     1741 gggtcgatgc tccagctctc ggcgagcagg ggcacgatgc tgccgtccat gttgatcttg
     1801 gtcaggccct cgagcacgtt gtagtggacg atctcgccga tcgcggcggc cggcgcggtc
     1861 gtcgggtcga gggcgggcgg ctcgaggacc atgccgagca cgaggctgtc gttgcgcgcc
     1921 tgcgcggcga ctccgagcgg cagcgcgacg agcgctgcca gggcggcgat ggcgaagaaa
     1981 cgggtgcgcg aattcatcat gtcggtcctc tttcagggtt gccttcaacg atcacctgtt
     2041 cggcgaaatg gcaggcggcc agatgcgcgc ccgccacggt ccgcagcgcc ggcgcctgct
     2101 cgctgcaaag cacctgccgg aatcggcaac gcggtgcgaa cgaacagccg ccgccgggcg
     2161 gtccttcatg cgtgacttta ctggaggaac cgggccgggc cgccgttgcg ctgcgacgcg
     2221 agcgcggggc aggtacgccg gcctgcggca cggcttccat cagcgcgcgc gtgtaggggt
     2281 gcgcggcggc gcgaaacagc acctcgggcg agccctgctc gacgatgcgg ccggcgtaga
     2341 gcaccgcgac ctcggcgcag atgtggtcga ccacggcgat gtcgtggctg atcagcaggt
     2401 aggtcacgcc gaactgttgc tgcaagtcca gcagcaggtt caacacctgc gcctgcaccg
     2461 agacgtcgag cgcgctcacc ggttcgtcgg cgacgatcag gcgcggccgc gtgatcagcg
     2521 cgcgcgcgat ggcgatgcgc tggcgctgcc cgccggagaa ctcgtgcggg tacctgtcgg
     2581 cgtcggcgcc gcgcaggccc accgcatcga gcgactcggc gacgcgcgaa cgggcgtccg
     2641 ccactggcat cgccgcgagc ggctcggcga cgatccggcc gacgcgctgg cgcggatcga
     2701 gcgatccgta cgggtcctgg aagaccatct ggaaatcgcg ccgcgccgcg cgcaattcgc
     2761 ccggtgcgag cgcgttcagg tcgcggccga ggagggtcac gcgccctgaa gtcggccgct
     2821 cgagcgccat cacgagacgc gccagcgtcg acttgccgga gcccgattcg ccgaccagcc
     2881 cgaggctcgt gccggcctgc atcgaaaagc tcacaccgcg cagcgcctcg acccgtggcg
     2941 ccggctcgaa cagacgttcg cgcggcagca ggtagtgcct gaccagcgcg tcgaccgcga
     3001 gcagcggcgc gtagctcatg cgctcgagac cctggcgggc gcgacagcgt gcggcgtttc
     3061 tccggcg
//
LOCUS       DASVHM010000848         2606 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_61420, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000848 DASVHM010000000
VERSION     DASVHM010000848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61420"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..796)
                     /locus_tag="VF308_15545"
     CDS             complement(<1..796)
                     /locus_tag="VF308_15545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438119.1"
                     /translation="MGFGKTSSPTLLGQTLDFSASVHLGPDEAFGRECVAAEVSSGDN
                     KLGSDQIRVSVQTAADPNERTIRVTTLRLIDEPVVTVTLTVGCTSRVSRKFVTFLDPP
                     LLNLAQAGETDARTAEPQRVESQVAPLVAMLRPPRSAARPPGAAPAYVRTRVAERPRH
                     RSALGPRMAHAARLAAADQAQAPRERRAAAAPHSAGLVVASVAPRLRLEAASPPLAQA
                     PQASAAAALPRADEATALAAVGDPRVDELQAALAEERERIRMLETGL"
     gene            1024..1803
                     /locus_tag="VF308_15550"
     CDS             1024..1803
                     /locus_tag="VF308_15550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase family protein"
                     /protein_id="HEX7438120.1"
                     /translation="MPSELLTERVGAVLLLTISDPATRNTLSTQVLSAGIEALGVAES
                     DAQIGAVILRGAGAHFCAGGNVQGLADRREAGRPVQRQMLEKLHQFVEALRTFPKPII
                     AAVEGAAAGAGFALALNCDLIVAAEDAKFTMSYGRLGLSPDAGSTWNLVQALPRMLAQ
                     RMIWLAEPMSAAQLNVTGIVGWLTPNGTASAEALRVAARLEAMAPNALASAKELVQLA
                     AGRSLHEQLAAERDHFLDNLFHANGAEGLQAFLEKRAARFG"
     gene            1851..2555
                     /locus_tag="VF308_15555"
     CDS             1851..2555
                     /locus_tag="VF308_15555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEX7438121.1"
                     /translation="MSSALLTIEERSHIDAGSWFSKLSPALRAAILARAVVRRLADGA
                     LLSARGATADEWVGVAKGAVRVSSVSLAGKQITLTYVEPGTWFGDIALFDGMPRTHDA
                     NARGETTLLVVRKADFKDLLALHVELYDALLRLNCRRLRLLFDTVEDLNTRPLGSRLA
                     KQILLLARSYGIAQGEEIRIGLQLAQEDLAQLLGASRQRVNQELKSFERDGAVRIEPT
                     RLVVLSKEKLLAIADR"
BASE COUNT          412 a          913 c          879 g          402 t
ORIGIN      
        1 ccaggccggt ttcgagcatc cggatgcgtt cgcgttcctc tgcgagcgct gcctgcagtt
       61 catccacgcg gggatcgccg acggccgcca gcgcagtcgc ttcgtcggcc cgcggcagcg
      121 ccgcagcggc cgatgcctgc ggcgcctggg cgagcggtgg actggccgcc tcgagccgaa
      181 gacgcggcgc gacgctcgca accacgaggc cggccgaatg cggtgccgcg gccgcgcgcc
      241 gctcgcgcgg cgcctgcgcc tgatccgcgg ccgccagcct tgcggcatgc gccatgcgag
      301 gcccgagcgc gctgcgatgg cgcggccgct cggcgacacg cgtgcggacg tacgccggtg
      361 cggcgccggg ggggcgagcc gcactgcgcg gcggccgcaa catcgcgacc agcggcgcaa
      421 cctgggattc gacgcgctgc ggttccgccg tgcgcgcatc ggtttccccg gcttgcgcaa
      481 ggttcaacaa cggcggatcg agaaaggtca cgaacttgcg cgagacccgc gacgtgcagc
      541 ccacggtcag ggtcacggtt acgaccggtt cgtcgatcag gcgcagcgtc gtcacgcgta
      601 tggtgcgctc gttcgggtcg gcggcggtct gcacgctgac gcgaatctgg tcggagccga
      661 gcttgttgtc accggaagaa acttcggccg caacgcactc gcgaccgaac gcctcatcgg
      721 gaccgaggtg gacgctggcg gagaaatcga gcgtctggcc gagaagggtc ggactcgagg
      781 tcttgccgaa gcccatggcc tgaacgaagg ggacggaaag acacagcgtc gcgccgattg
      841 aaaaaacgat caggactctg cgcatgcttg aggtgtctgg aatgccgggg cactctagca
      901 cgcacccccg ggcacgacgc cccgatccac ctcgtgcgca aggccgcggc gtgacacaat
      961 tcctcgaatg aagcacggct ttttgcagtc cctcgataag caccctcgcg gctgcgcatt
     1021 tcgatgcctt cggaattgct gaccgagcgt gtcggcgcgg tcctgctgct cacgatcagc
     1081 gacccggcga cgcgcaacac gctgtcgact caggtcctct cggcggggat cgaggccctc
     1141 ggcgtggccg agtcggacgc ccagatcggc gccgtgatcc tgcgcggcgc aggggcccat
     1201 ttctgcgccg gaggcaacgt gcaaggtctt gccgatcgcc gcgaagcggg tcgtccggta
     1261 caacgccaga tgctcgagaa actgcaccag ttcgtcgaag ccttgcgcac ctttccgaag
     1321 ccgatcatcg ccgcggtcga aggtgccgcg gccggggccg gcttcgcact cgccttgaat
     1381 tgcgacctga tcgtcgcggc cgaagacgcg aagttcacga tgtcgtacgg acggctcggc
     1441 ctctcgcccg atgccggctc gacctggaac ctggtgcagg cgttgccacg catgctcgcg
     1501 cagcgcatga tctggctcgc cgaaccgatg agcgcggcgc agctcaacgt caccggcatc
     1561 gtcggctggc tcacgccgaa cggcaccgcg tcggccgagg ccctgcgggt cgcggcgcgt
     1621 ctagaggcaa tggccccgaa cgcacttgca agcgccaagg aactggtcca gctggccgca
     1681 ggccggagcc tgcacgagca gctcgcggca gagcgcgacc actttctcga caacctgttc
     1741 cacgccaacg gcgccgaagg cctgcaggcc tttcttgaga agcgcgccgc gcgctttggc
     1801 tagggcgccc gcgcttcgcg cccgcgccct gtcacctcag agactggttc atgagcagcg
     1861 cgcttcttac aatcgaagaa cgctcccaca tcgacgccgg ctcgtggttc tccaaacttt
     1921 ccccagcgct gcgcgcggcc atcttggcgc gcgcggtcgt gcggcgcctg gccgatggcg
     1981 cgctgctgtc ggcgcgcggc gccacggccg acgagtgggt cggagtggcc aagggggcgg
     2041 tacgggtcag ctcggtctcg cttgccggca agcagatcac gctcacctat gtcgagccgg
     2101 gaacctggtt cggcgacatc gcgctcttcg acggcatgcc ccgcacccac gatgcgaatg
     2161 cccgtggcga gaccacgctg ctggtcgtgc gaaaggccga cttcaaggat ctgctcgcgc
     2221 tccatgtcga gctctacgac gcgctgctgc gcctcaattg ccggcgcctg cggctgctct
     2281 tcgacacggt cgaagacctc aacacccgcc cgctcggctc gcgcctggcc aagcaaatcc
     2341 ttctgctcgc gcgcagctac ggcatcgccc agggcgagga gatccgcatc ggcctgcaac
     2401 tcgcgcagga agacctggcc cagttgctcg gcgcttcgcg ccagcgcgtc aaccaggagc
     2461 tcaagagctt cgagcgcgac ggtgcggtgc ggatcgagcc gacgcggctg gtcgttctgt
     2521 ccaaagagaa gttgctcgcc atcgcggatc gctgatgcgc gcaggcatgc cgatccccgc
     2581 cttcgggccc ttcccgccgc aaacgc
//
LOCUS       DASVHM010000849         4272 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1075746, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000849 DASVHM010000000
VERSION     DASVHM010000849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4272
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1075746"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1311
                     /locus_tag="VF308_15560"
     CDS             <1..1311
                     /locus_tag="VF308_15560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEX7438122.1"
                     /translation="LWVFRRIVGQMQHDLFHVYTVDQHIIMVLRNVRRFFVPEHAHEY
                     PFCSQLASTWDRPYVLYVAALFHDVAKGRGGDHSELGAQEARRFCREHGIDRADTALI
                     EFLVANHLTMSRIAQKEDLSDPDVIDAFVTLVGTERRLTALYLLTVADIRGTSPKVWN
                     AWKGKLLEDLYRLTLRALGGARPNMDAEIEARKVEAQHLLNLVALPAGIEAPLWSTLE
                     LSYFARHDAGDIAWHARSLHDRVTTTTPVVKARLSSLGEGLQVLVYAPDRQNLFARIC
                     GYFEAAGFNILDAKIHTTATGYALDTYQVTSPPFEQHYRDLISYVETKLASALDEAGP
                     LPEPGRGRISRRVRSFPITPRVTLRPDERGQRWLLAVSASDRSGLLYSIARVLARHHI
                     NLQLAKITTLGERVEDTFLIDGPELQQNRAQLQIETELLDAIGP"
     gene            1341..2405
                     /gene="mnmH"
                     /locus_tag="VF308_15565"
     CDS             1341..2405
                     /gene="mnmH"
                     /locus_tag="VF308_15565"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011483944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043828 - tRNA 2-selenouridine synthase
                     activity [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEX7438123.1"
                     /translation="MALALITASDALARLDGFDTIIDARSQSEFAEDRLPGAVNWPSL
                     TDAERAEIGTQYKQESPFEARKRGAALVARNIARHLEREMPGLGKGWAPLVYCWRGGQ
                     RSAALALVLDQIGFRVRLLEGGYREYRRAVVAALEHLPARFDFKVVCGPTGSGKSRLL
                     QVLRAQGAQVLDLEALANHRGSVLGLVPGSPQPSQKAFDSALWNALRGLDPSRPVFVE
                     SESRKVGDLRVAEALIERMRAAPCIWLELDLEGRVALLLQEYDFFVKDTATFCGRLDA
                     LRVLRGNEVVKAWQQAARDGRTEQVVRELLTQHYDPIYLQSMRRNFAGVAAPTLRVEW
                     DGSDAGLADAAARIRLAFGD"
     gene            complement(2439..3176)
                     /gene="phbB"
                     /locus_tag="VF308_15570"
     CDS             complement(2439..3176)
                     /gene="phbB"
                     /locus_tag="VF308_15570"
                     /EC_number="1.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017524240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018454 - acetoacetyl-CoA reductase
                     activity [Evidence IEA];
                     GO_process: GO:0042619 - poly-hydroxybutyrate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetyl-CoA reductase"
                     /protein_id="HEX7438124.1"
                     /translation="MTGKVAYVTGGMGGIGTTICQRLHRDGFVVVAGCGPSRDFDKWL
                     GAQKALGYDFYASVGNVGDWDSTVAAFRKVKAEHGPVDVLVNNAGITRDGMFRKMTRA
                     DWDAVIETNLTSLFNVTKQVIDDMVERGWGRIVNISSVNGEKGQFGQTNYSAAKAGMH
                     GFTMALAQEVAAKGVTVNTVSPGYIGTEMVMKIRQDVLDKIVAGIPVKRLGTPDDIAS
                     IVAWVASDESGFATGADFSINGGLHMG"
     gene            complement(3232..>4272)
                     /locus_tag="VF308_15575"
     CDS             complement(3232..>4272)
                     /locus_tag="VF308_15575"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018902869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEX7438125.1"
                     /translation="QIGEVILGQVLAAGSGQNPARQSVIKSGLPQSVPALTINAVCGS
                     GLKAVMLAAQAIRDGDYEIGIAGGQENMSLAPHVLPGSRDGQRMGDWKLVDSMIVDGL
                     FDVYNRYHMGITAENVAKKYDISREKQDALALGSQQKATAAQEAGRFEDEIVPFSIAQ
                     KKGDPIVFVADEFINKKTSAEALASLRPAFDKAGSVTAGNASGINDGAAAVVVMTAKK
                     AEQLGLTPLARIASYATVALDPAFMGMGPVPASQKALQRAGWKPSDLDLLEINEAFAA
                     QACAVNNEMGWDTSKVNVNGGAIAIGHPIGASGCRILVTLLHEMKRRNAKKGIASLCI
                     GGGMGVALCVEH"
BASE COUNT          657 a         1521 c         1370 g          724 t
ORIGIN      
        1 ctatgggtct tccggcgcat cgtcgggcag atgcagcacg acctgtttca cgtctacacg
       61 gtcgaccagc acatcatcat ggtgctgcgc aacgtgcggc gcttcttcgt tccggagcac
      121 gcccacgaat acccgttctg ctcgcagctc gcctcgacct gggaccggcc ctacgtgctc
      181 tatgtcgccg ccctcttcca cgacgtggcc aagggccgcg gcggcgacca ttccgaactc
      241 ggcgcgcagg aggcgaggcg cttctgccgc gagcatggca tcgaccgtgc cgacaccgcc
      301 ctgatcgaat tcctggtcgc gaaccacctg acgatgtcgc gcatcgcgca gaaggaagac
      361 ctctccgatc cggacgtgat tgacgccttc gtcacgctcg tcggcaccga gcggcgcctg
      421 accgcgctct acctgctcac cgtcgccgac atccgcggca ccagcccgaa ggtctggaac
      481 gcctggaagg gcaagctcct cgaagacctg tatcggctga ccctgcgcgc gctcggcggg
      541 gcgcgcccga acatggatgc ggagatcgag gcgcgcaagg tcgaggcaca gcacctcctg
      601 aacctggtcg cgctgccggc cggaatcgag gcgccgctct ggtcgacgct cgagctcagc
      661 tacttcgcgc gccacgatgc cggcgacatc gcctggcatg cgcgatcgct ccatgaccgc
      721 gtgacgacga cgacaccggt cgtcaaggcg cgcctgtcat cgctcggcga gggcctgcag
      781 gtgctcgtct acgcgccgga ccggcagaat ctcttcgcgc gcatctgcgg ctacttcgag
      841 gcggccggct tcaacatcct cgatgccaag atccacacga cggcgaccgg ctacgccctc
      901 gacacctacc aggtcacgag cccgccgttc gaacagcact atcgcgatct gatctcctac
      961 gtcgaaacga agctggcaag cgcgctcgac gaggccgggc cattgcccga gccgggccga
     1021 ggccggatct cgcgccgcgt gaggtcgttc ccgatcacgc cccgcgtcac cctgcgcccc
     1081 gacgagcgcg gccagcgctg gctgctcgca gtgtcggcga gcgaccgttc cggcctgctc
     1141 tattcgatcg cccgggtgct cgcccgccac cacatcaacc tgcagctcgc caagatcacg
     1201 acgctcggcg agcgcgtcga agacaccttc ctgatcgacg ggcccgagct gcagcagaac
     1261 cgcgcgcagt tgcagatcga aaccgaactg ctcgacgcga tcggtccctg atggccgatg
     1321 gcgccggtca ctgagctgtc atggcgctgg ccctgatcac tgcgagcgac gcgctggcgc
     1381 gcctcgatgg gttcgacacc atcatcgatg cgcgctcgca gagcgagttc gccgaagacc
     1441 gcctgccggg cgccgtgaac tggccctcgc tcaccgacgc cgagcgtgcc gagatcggca
     1501 cccagtacaa gcaggaatcg ccgttcgaag ccagaaagcg cggcgcggcg ctggtggcgc
     1561 gcaacatcgc ccgccacctc gagcgcgaga tgccggggct gggcaagggc tgggccccgc
     1621 tcgtctactg ttggcgcggc ggccagcgca gcgccgcgct ggccctcgtc ctcgaccaga
     1681 tcggctttcg ggtccgattg ctcgaaggcg gctaccgcga ataccggcgc gccgtcgtcg
     1741 ccgcgctcga acacctgccg gcccggttcg atttcaaggt cgtctgcggt ccgaccggtt
     1801 cgggcaagag ccggctcctg caggtgctgc gcgcgcaggg cgcgcaggtg ctcgatctcg
     1861 aggctctggc gaaccaccgc ggctcggtgc tcggcctcgt gcccggcagc ccgcagccgt
     1921 cccaaaaggc gtttgactcg gcgctctgga atgcgctgcg cggcctcgac ccttcgcggc
     1981 cggtcttcgt cgagagcgaa agcaggaagg tcggcgatct gcgcgtcgcc gaagcgctga
     2041 tcgaacgcat gcgcgcggcg ccgtgcatct ggctcgagct cgacctggaa ggtcgcgtcg
     2101 cgttgctgct ccaggagtac gatttcttcg tcaaggacac ggccacgttc tgcggacggc
     2161 tcgacgccct gcgcgtcctg cgcggcaacg aggtggtcaa ggcctggcag caggccgcgc
     2221 gcgacgggcg caccgaacag gtcgtccgcg agctcctgac gcagcactac gacccgatct
     2281 acctgcagtc gatgcggcgc aatttcgccg gcgtcgcggc acctacgctt cgcgtcgaat
     2341 gggacggcag cgatgcaggg ctcgccgatg cagcggcccg cattcgcctg gccttcggcg
     2401 actgaggccg ccgtcgcggc agccggccta gccctgggct agcccatgtg caaaccgccg
     2461 ttgatcgaga agtcggcccc ggtcgcgaag ccggattcgt cggatgccac ccacgccacg
     2521 atcgaggcga tgtcgtccgg tgtgcccagg cgtttcacgg gaatgccggc gacgatcttg
     2581 tcgagcacgt cctggcggat cttcatcacc atttcggtcc cgatgtagcc cgggctcacc
     2641 gtgttcacgg tcacgccctt ggccgccacc tcctgcgcca gcgccatcgt gaagccgtgc
     2701 atgccggcct tggccgccga gtagttggtc tgcccgaact ggcccttctc gccgttcacc
     2761 gaactgatgt tgacgatgcg gccccaaccg cgctcgacca tgtcgtcgat gacctgcttg
     2821 gtcacgttga agaggctcgt gagattggtc tcgatcaccg cgtcccagtc ggcacgcgtc
     2881 atcttgcgga acatgccgtc gcgggtgatg ccggcattgt tgacgagcac gtcgaccggg
     2941 ccgtgttcgg ccttgacctt gcggaatgcg gccaccgtcg aatcccagtc gccgacattg
     3001 ccgaccgacg cgtagaagtc gtagccgagc gccttctgcg cgccgagcca cttgtcgaaa
     3061 tcgcggctcg gcccgcagcc tgcgacgacg acgaagccgt cgcgatgcag gcgttggcag
     3121 atcgtggtgc cgatgccgcc catgccaccc gtgacgtacg caaccttgcc ggtcatgcgc
     3181 cgtccctccc atttggcgac cccgcggcga acatgccgga accgatcgat gtcaatgttc
     3241 cacgcacagc gccaccccca tgccgccgcc gatgcaaagt gaggcgatgc ccttcttcgc
     3301 attgcgacgc ttcatctcgt gcagcaaggt gacgaggatg cggcagcccg acgccccgat
     3361 cgggtggccg atcgcgatgg cgccgccatt gacgttgacc ttgctcgtgt cccagcccat
     3421 ctcgttgttg acggcgcagg cctgcgccgc gaaggcctcg ttgatctcga gcaggtcgag
     3481 gtccgaaggc ttccagccgg cgcgctgcag cgccttctgg gaggccggca ccggacccat
     3541 gcccatgaac gcagggtcga gcgccaccgt cgcataactg gcgatgcgcg ccagcggcgt
     3601 gaggccgagc tgctcggcct tcttggcggt catcacgacc acggcggcgg cgccgtcgtt
     3661 gatcccggat gcgttgcccg ccgtcacgct gccggccttg tcgaaggcgg ggcgcaggct
     3721 cgccagtgct tcggcgctgg tcttcttgtt gatgaactcg tcggccacga agacgatcgg
     3781 atcgcccttc ttctgggcga tcgagaacgg cacgatctcg tcctcgaagc gcccggcttc
     3841 ctgcgccgcc gttgccttct gctgcgaacc gagcgcgagc gcatcctgtt tctcgcggct
     3901 aatgtcgtac ttcttcgcga cgttctcggc agtgatgccc atgtggtacc tgttgtagac
     3961 gtcgaaaagg ccatcgacga tcatcgaatc gacgagcttc cagtcgccca tgcgctgccc
     4021 gtcgcgcgag cccggcagca cgtgcggcgc gaggctcatg ttctcctggc cgccggcgat
     4081 gccgatctcg tagtcgccgt cgcggatcgc ctgcgcagcg agcatcaccg ccttcaggcc
     4141 cgatccgcac accgcgttga tcgtcagcgc gggcacgctc tgcggcaggc cgctcttgat
     4201 gacgctctgg cgtgccgggt tctggcccga gccggcggcg agcacctggc cgaggatgac
     4261 ctcgccaatc tg
//
LOCUS       DASVHM010000850         1890 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1216870, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000850 DASVHM010000000
VERSION     DASVHM010000850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1216870"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..445
                     /locus_tag="VF308_15580"
     CDS             <1..445
                     /locus_tag="VF308_15580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003839 - gamma-glutamylcyclotransferase
                     activity [Evidence IEA];
                     GO_function: GO:0061928 - glutathione specific
                     gamma-glutamylcyclotransferase activity [Evidence IEA];
                     GO_process: GO:0006751 - glutathione catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HEX7438126.1"
                     /translation="GWHRALQMRSRVNRGTPECPGLVFALVPGGSCRGIVYRIEEKHA
                     AGQLERLWAREMPTGIYDPKWLTGRTSHGGVKALTFTLSRTSPAHTGPVPDAQMIDIL
                     RTANGRYGSTLAYLIDTATSLRGCGIRDRDIERLVALARRHALTA"
     gene            complement(435..1082)
                     /locus_tag="VF308_15585"
     CDS             complement(435..1082)
                     /locus_tag="VF308_15585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEX7438127.1"
                     /translation="MKAQPVVIVLAAGKGSRFAGAGHKLAQRLGAATMLGTTLRHALA
                     SHLQVVVVTTERFAALARRSVAARDVVVLPEVGTQENPLLGMGYSIGAGVGARPDASG
                     WLVLPGDMPLVQPATLQAVARELDHHPVVYAQYKGRRGHPVGFAAELYSELSALSGDE
                     GARRLVARYPAFGLEVEDAGVLVDVDTAADLERLRGAGREDGDAAAAQAARNLTP"
     gene            1222..1857
                     /gene="pdxH"
                     /locus_tag="VF308_15590"
     CDS             1222..1857
                     /gene="pdxH"
                     /locus_tag="VF308_15590"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011810310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HEX7438128.1"
                     /translation="MDDLASLRKSYERAELDESVCAADPLAQFDLWLGQAIEAKLPEP
                     NAMTLATVGADGRPSTRIVLVKGFDARGIVWYTNYESRKGRELALHDAAALQFHWVEL
                     ERVVRIEGHVDRVSAQESDAYFKSRPLDSRIGAWASPQSQVIESRAVLVANAAKFGAR
                     FLLNPPRPPHWGGYRLQPDTWEFWQGRRSRLHDRLRYRLEGDRWSRERLAP"
BASE COUNT          287 a          700 c          630 g          273 t
ORIGIN      
        1 cggctggcac cgtgcgctcc agatgcgctc gcgcgtgaac cgcggcacgc ccgagtgccc
       61 cggcctggtg ttcgccctgg tcccgggtgg ctcgtgccgc ggcatcgtct atcggatcga
      121 ggagaagcat gcggcggggc agctcgagcg gctctgggcg cgcgagatgc cgaccggcat
      181 ctacgatccc aagtggctca ccggccgcac gtcgcacggc ggagtcaagg cgctcacctt
      241 cacgctcagc cgcaccagcc cggcccacac cgggccggtg ccagatgcgc agatgatcga
      301 catcctgcgc acggccaacg ggcgctacgg cagcaccctc gcctatctga tcgacaccgc
      361 cacctcgttg cgcggctgcg gcatccgcga ccgcgacatc gagcgcctgg tcgccctcgc
      421 gcgccgccac gccctcacgg cgtgaggttc ctcgcggctt gcgccgcggc ggcgtcgcca
      481 tcctctcgcc ctgcgccgcg cagccgttcg agatcggctg cggtgtcgac gtcgaccaga
      541 acgcccgcgt cttccacttc aaggccgaac gccgggtagc gcgcgacgag gcgacgcgcg
      601 ccttcgtcgc ccgaaagcgc actgagttcc gagtacagct cggccgcgaa gccgaccgga
      661 tggccacgcc tacccttgta ctgcgcatag accacgggat ggtgatcgag ttcgcgcgcg
      721 accgcctgca gcgtggccgg ctgcaccagc ggcatgtcgc cgggcagaac gagccagccc
      781 gacgcatccg gccgcgcgcc gacgccggcc ccgatcgagt agcccatgcc gagcagggga
      841 ttttcttgcg tgccgacctc cggcagcacg acgacatcgc gcgccgcgac gctgcgccgc
      901 gcaagcgcgg cgaagcgctc ggtggtgacg acgacgacct gcaggtggct cgcgagcgca
      961 tggcgcagcg tcgtgccgag catcgtcgcc gcccccaggc gctgggccag cttgtgcccg
     1021 gccccggcga agcgggaacc tttcccggcc gccaggacga tcaccacggg ctgcgctttc
     1081 attcgaacct tcttcctggg tgggcgaacc actcgacccg aggatggaag cagcgcccgc
     1141 tttcaggtag tgggagcatt acctaaggcc ttccccgtat gggcatgcac ccctgcgcga
     1201 ccgcattcct atactcgccg catggacgac ctcgccagcc tgcgcaagag ctacgagcgc
     1261 gccgagctcg acgagtcggt gtgcgcagcc gacccgctgg cgcaattcga cctttggctc
     1321 ggccaggcca tcgaggcgaa gctgcccgag ccgaacgcga tgacgctcgc cacggtcggt
     1381 gccgacggca ggccgtcgac gcgcatcgtc ctggtcaagg gcttcgacgc gcgcggcatc
     1441 gtctggtaca ccaactacga aagccgcaag ggccgcgaac tcgcgctgca tgacgccgcc
     1501 gcgctgcagt tccattgggt cgagctcgaa cgcgtggtgc gcatcgaagg gcacgtggac
     1561 agagtctcgg cgcaagagtc cgacgcgtac ttcaagtcgc gtccgctcga ttcgcgcatc
     1621 ggagcctggg cttcgccgca aagccaggtc atcgaatcgc gcgcggtgct ggtcgcgaac
     1681 gcggcgaaat tcggcgcgcg cttcctgctg aaccccccgc gcccgccgca ttggggcggc
     1741 tatcgcctcc agcccgacac ctgggagttc tggcaaggcc gccgttcgcg cctgcacgat
     1801 cggctgcgct atcggctcga gggcgatcgc tggtcgcgcg aacgcctcgc cccctgaagg
     1861 ctgcgcctgc gaccgggcct cagcgcggcg
//
LOCUS       DASVHM010000851         3339 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1075838, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000851 DASVHM010000000
VERSION     DASVHM010000851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3339
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1075838"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..667)
                     /gene="ftsA"
                     /locus_tag="VF308_15595"
     CDS             complement(<1..667)
                     /gene="ftsA"
                     /locus_tag="VF308_15595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013539446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEX7438129.1"
                     /translation="MAKELKDLVVGLDIGTAKVMAVVAEVMPDGELRIAGLGSAPAHG
                     LKRGVVVNIDATVQSIQQALKEAEMMADCKITRVYTGITGSHIRGQNSTGMVIVRDKE
                     VTPVDVTRVVETAKAINIPNDQRLLLVEPQEFVIDGHEVKEPIGMSGGRLEVRVHIVT
                     GAQSAAENIVKCVRRCGLEVEQLVLNPSASSHAVLTEDEKDLGVALVDIGAGTTDVAI
                     FTDG"
     gene            complement(684..1496)
                     /locus_tag="VF308_15600"
     CDS             complement(684..1496)
                     /locus_tag="VF308_15600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HEX7438130.1"
                     /translation="MATTPRYNRTATPPLPGDIALMNATAAVFAAVGAIALIATLLLW
                     LVRQPAFALRSIRIEGDVTRNSISTIRANATPQLAGNFFTLDLAAGRRAFESVPWVRQ
                     AVVSRVWPDRLQVMLEEHRPVALWSNEGTADKLVNSFGEVFEANIGDVEDDGLPTLQG
                     PDGSAAHVLAMFGRLAPILAGVDARIETLALSARGSWRAELDNGAEVQFGRGSDDEVA
                     ERTQRFVGTLTQVLARYQRPLEYADLRHNDGYAVRLKGITTTLGLPDKATRK"
     gene            complement(1500..2492)
                     /locus_tag="VF308_15605"
     CDS             complement(1500..2492)
                     /locus_tag="VF308_15605"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010462334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEX7438131.1"
                     /translation="MSAGTSSFGKVAVLMGGTSAEREISLMSGAGVLAALQSQGVDAQ
                     AFDPAARDLGDLKREGFERCFIALHGRHGEDGSVQGALELLGVPYTGSGVLASAIAMD
                     KVMTKRVWIAEGLPTPKFIRLGPDEQDAARVRTVPDELGLPLIVKPPREGSSIGITKV
                     AGYSQMQDAVLLAAGYDPDVLCEEFIEGDEVTCPVLGEGGSARALPVVRIVAPEGAYD
                     YQNKYFTDVVQYQCPSGLPGAEEIEIQRLVLAAYRTLGCRGWDRADLMVRQRDRKPFL
                     LEMNTSPGMTSHSLVPMSARAAGLGYAELCLHILADAALDTPPGHADASPRQGA"
     gene            complement(2489..>3339)
                     /locus_tag="VF308_15610"
     CDS             complement(2489..>3339)
                     /locus_tag="VF308_15610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007864788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HEX7438132.1"
                     /translation="PYGHDVTRLKQAFVEFIHKMPFYGAAIVCADDAGVRSIMPMISR
                     PLVSYGFGADAMIRAVDVEADAGTMRFTVQRKNGVRMPDLRVTLNLPGDHNVLNALAA
                     IAVATELELPDAPVVKGLAEFHGVDRRFERYGELPALGGGSFTLIDDYGHHPVEMAAT
                     LAAARGAFPGRRILLAFQPHRYTRTRDCFEDFVKVIGSADAVLLAEVYAAGEPPIVAA
                     DGRALARALRVAGKVDPVFVDDIATMAQIIADQARDGDVVISMGAGSIGQVPAQVREL
                     LHGNPG"
BASE COUNT          493 a         1173 c         1141 g          532 t
ORIGIN      
        1 agccgtcggt gaagatcgcg acgtcggttg tgccggcgcc gatgtcgacg agcgcgaccc
       61 cgaggtcctt ctcgtcctcg gtcagcaccg cgtggctcga cgcgctcggg ttgagcacca
      121 gctgctcgac ttcgaggccg cagcggcgca cgcacttgac gatgttctcg gccgcgctct
      181 gcgccccggt gacgatgtgc acccgcacct cgagccggcc gccgctcatg ccgatcggct
      241 ccttcacctc gtggccgtcg atcacgaact cctgcggctc gacgagcagc aaccgctggt
      301 cgttcggaat gttgatggcc ttcgcggtct cgacgacgcg cgtcacgtcg accggcgtca
      361 cttccttgtc gcgcacgatc accatgccgg tcgagttctg gccgcggatg tggctgccgg
      421 tgatgccggt gtagacgcgc gtgatcttgc agtcggccat catctcggcc tctttcaggg
      481 cctgctggat cgactgcacg gtggcgtcga tgttgacgac gacgccgcgc ttcaagccgt
      541 gcgccggcgc gctgccgagg ccggcgatgc gcagttcgcc gtccggcatg acctcggcga
      601 ccaccgccat caccttcgcg gtgccgatgt cgaggccgac caccagatcc ttcaattcct
      661 tggccatgtc tgtccctgct tgtctatttc cgggtcgcct tgtcgggcag gccgagcgtc
      721 gtcgtgatgc ccttgaggcg caccgcatag ccgtcgttgt gccgaaggtc ggcgtattcg
      781 agggggcgct ggtagcgcgc gagcacttgc gtcaacgtgc cgacgaagcg ctgcgtgcgt
      841 tcggcgacct cgtcgtcgct gccgcgcccg aactgcacct cggcgccgtt gtcgagctcg
      901 gcacgccagg aaccccgcgc cgagagtgcc agcgtctcga tgcgcgcatc gacgccggcg
      961 aggatcggcg cgaggcgccc gaacatcgcg agcacgtgcg cggcgctgcc gtccgggccc
     1021 tgcagcgtcg gcagcccgtc gtcctcgacg tcgccgatgt tcgcttcgaa gacctcgccg
     1081 aagctgttga ccagcttgtc agcggtgccc tcgttgctcc acagtgcgac cggccggtgc
     1141 tcttcgagca tcacctgcag gcggtccggc cagacgcggc tgacgacggc ctggcgcacc
     1201 cacggcaccg attcgaacgc ccggcgcccc gccgccaggt cgagggtgaa gaaattgccg
     1261 gcgagctgcg gcgtcgcatt ggcgcggatc gtcgagatgc tgttgcgcgt gacgtcgcct
     1321 tcgatgcgga tcgaacgcag cgcgaacgcc ggctggcgca cgagccagag caacagcgtg
     1381 gcgatcagcg cgatcgcgcc gaccgccgcg aacaccgccg cagtcgcgtt catcagcgcg
     1441 atatcgcccg gcagcggcgg cgttgcggtg cggttgtagc gcggcgtcgt ggccatcgct
     1501 caggctccct gcctcggcga cgcatccgca tgaccgggcg gcgtgtcgag cgccgcatcg
     1561 gcgaggatgt gcaggcacaa ctcggcgtag ccgagcccgg cggccctggc cgacatcggc
     1621 accagcgaat ggctggtcat gcccggtgag gtgttcatct cgagcaggaa gggcttgcga
     1681 tcgcgctgcc gcaccatcag gtcggcgcgg tcccagccgc ggcagccgag cgtgcgatag
     1741 gcggcgagca cgaggcgctg gatctcgatc tcctcggccc cgggcagccc gctcgggcat
     1801 tggtactgga cgacgtcggt gaaatacttg ttctgatagt cgtaggcgcc ttcgggcgcg
     1861 acgatcctga ccaccggcag cgcccgggcc gaaccgcctt cgccgagcac cgggcacgtc
     1921 acctcgtcgc cttcgatgaa ttcctcgcag agcacgtcgg ggtcatagcc ggcggcgagc
     1981 agcaccgcgt cctgcatctg cgaatagccg gcgaccttgg tgatgccgat cgaggaacct
     2041 tcgcgcggcg gcttgacgat caagggcagg ccgagttcgt ccggcaccgt gcgcacgcgc
     2101 gcggcgtcct gctcgtcggg accgagccgg atgaacttcg gcgtcggcag gccctcggcg
     2161 atccagacgc gcttggtcat caccttgtcc atcgcgatgg ccgacgccag cacgcccgag
     2221 ccggtatacg gcacgccgag caactcgagc gcgccctgca cgctgccgtc ctcgccgtgg
     2281 cgcccgtgca gcgcgatgaa acagcgctcg aaaccctcgc gcttcaggtc gccgaggtcg
     2341 cgggcggccg gatcgaaagc ttgcgcgtcg acgccctgcg attgcagcgc ggccagcacg
     2401 ccggcgcccg acatcagcga gatctcgcgc tcggccgacg tgccgcccat cagcaccgcg
     2461 accttgccga aggagctcgt gccggcgctc atccgggatt cccgtggagc agttcgcgga
     2521 cctgcgccgg gacctggccg atcgaaccag cccccatcga gatgaccaca tcaccgtccc
     2581 gggcctggtc ggcgatgatc tgcgccatcg tcgcgatgtc gtcgacgaag accggatcga
     2641 ccttgccggc gacccgcaga gcccgcgcca gcgcacgccc gtcggcagcg acgatcggcg
     2701 gttcgccggc ggcgtagact tcggccagca gcaccgcatc ggcgctgccg atcaccttga
     2761 cgaaatcctc gaagcagtcg cgcgtgcgcg tgtagcggtg cggctggaag gcgagcagga
     2821 tgcgccggcc cggaaaggcg ccgcgcgcgg ccgccagggt cgcggccatt tcgaccgggt
     2881 gatgaccgta gtcgtcgatc agcgtgaacg agccgccgcc cagggccggc agttcgccgt
     2941 agcgctcgaa gcgccggtcg acgccgtgga attcggccag gcccttgacc accggtgcgt
     3001 cgggcagctc gagttcggtc gcaaccgcga tcgccgcgag cgcattgagc acgttgtggt
     3061 cgccgggcag gttcagcgtg acacgcaggt cgggcatgcg cacgccgttc ttgcgctgca
     3121 ccgtgaagcg catcgtgccg gcatcggcct cgacgtcgac cgcccggatc atcgcgtcgg
     3181 cgccgaaacc gtagctcacc agcgggcgcg agatcatcgg catgatcgag cgcacgccgg
     3241 catcgtcggc gcagacgatc gccgcgccgt aaaacggcat cttgtggatg aactcgacga
     3301 acgcctgctt gagccgcgtg acatcgtggc cgtaggggt
//
LOCUS       DASVHM010000852         3194 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1291569, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000852 DASVHM010000000
VERSION     DASVHM010000852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3194
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1291569"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..336)
                     /locus_tag="VF308_15615"
     CDS             complement(<1..336)
                     /locus_tag="VF308_15615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438133.1"
                     /translation="MLLRPAFAAFIAVFAIACAAPAAAQVQRVFPQNALRGALVIGDP
                     PEITLNGKPARLAPGARIRNQSGMLEMSGTLTGTRLLVHYTLDPLDLVKDVWILTPEE
                     AAKRPWPTTP"
     gene            complement(416..492)
                     /locus_tag="VF308_15620"
     tRNA            complement(416..492)
                     /locus_tag="VF308_15620"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(456..458),aa:Met,seq:cat)
     gene            590..1654
                     /gene="ftsY"
                     /locus_tag="VF308_15625"
     CDS             590..1654
                     /gene="ftsY"
                     /locus_tag="VF308_15625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007862862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEX7438134.1"
                     /translation="MFSFFKKKPSAEVAAAPVAPAVPAPTPVPAPASAAPAESAAGRS
                     DWLARLRSGLRKTGSSISQVFTGAQIGDELYEELEAALLQADAGMKATEYLLADLKRR
                     VKRAGATDPAAVKELLADAITDLLAPLERPLRVGQPSPTVIMVVGVNGAGKTTTIGKL
                     TRHLVNAGQKVMLAAADTFRAAAREQLTVWAGRADLPGAQSKGRVEIVSQEGGDPAGV
                     TFDAVVAAKARGCDVVLADTAGRLTTQLHLMEELKKIRRVIGKAQEGAPHEVLLVLDG
                     NTGQNALAQVQLFDAALQLTGLVITKLDGTAKGGVLAAIALWSQSRPSPMAVYFIGVG
                     EKLEDLQTFDAREFAQALLG"
     gene            complement(1673..2407)
                     /locus_tag="VF308_15630"
     CDS             complement(1673..2407)
                     /locus_tag="VF308_15630"
                     /inference="COORDINATES: protein motif:HMM:NF022337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HEX7438135.1"
                     /translation="MDAYLIFGLAIAAAALLYWWSRKRRPAPNDTMMAEGDRLDTLIG
                     WPPEAARVLRTSERLAYSTLKLALPGYMILAQVPIARFMNVPKRNSYAEWMRRLGSQC
                     VDFVVCDVTSQVVAVIDVRPPDAQLSDRLRRRLDRVTRSLKAVNIPLHVWNEESLPSV
                     EAARASIVPEMPAVPVAMASRKSAPVAAAVLVEARNPFEDTDRDSSHDEVIEVIELAE
                     PSPSTWFDDLDSESSTLPPPRRRETG"
     gene            complement(2413..>3194)
                     /locus_tag="VF308_15635"
     CDS             complement(2413..>3194)
                     /locus_tag="VF308_15635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEX7438136.1"
                     /translation="LMREIKELHAVLNPVETLFVVDAMQGQDAINTAKAFKEALPLTG
                     IVLTKMDGDSRGGAALSVRSVTGVPIKFAGTSEKLDGLELFDAQRHAGRVLGMGDIVG
                     LVEEVQKGVDLAAAQKLADKVKAGDSFDLNDFLSQISQMKKMGGLAGLMDKLPSQLTG
                     KAANMAPADMDRAERDVRRMEGIICSMTPLERRKPELLKATRKRRIANGAGVQVQEVN
                     RLLNQFGQMRDMMKKMKGGGMMKMMKRMGGMKALGGMGGMR"
BASE COUNT          508 a         1075 c         1074 g          537 t
ORIGIN      
        1 cggcgtggtc ggccacggcc gttttgcggc ctcttcgggc gtgaggatcc atacgtcctt
       61 gacgaggtcg agcgggtcga gggtgtagtg caccagcagc cgcgtgccgg tcagcgtgcc
      121 ggacatttcg agcatgcccg actggttgcg gatgcgtgcg cccggtgcca ggcgggccgg
      181 cttgccgttg agcgtgatct ccggcgggtc accgatcacg agcgcgcccc gcaaggcgtt
      241 ttgcggaaag acgcgctgca cctgcgcggc cgccggtgcg gcgcaggcga tggcaaagac
      301 ggcgatgaag gcggcgaaag ccgggcgcag cagcatgcga gattcccgaa atgggggcga
      361 gcggtcgaca aagaaaatgg ctccggctct tttgaggcgg gagccggtct tggtgtggtg
      421 gcgcttcagg gattcgaacc ccggacctgc ggattatgat tccgtcgctc taaccgactg
      481 agctaaagcg cctgagcccg caagtatagc gacgggctcg cgctctcgac ccacacctgt
      541 ggcggccctg cggggcgtcg ccaaagtcgg tttcaccctc cggtccagca tgttcagctt
      601 cttcaagaaa aagccttctg ccgaggttgc ggccgcgcct gttgcaccgg ccgtcccggc
      661 gcccacgccg gttcccgccc ctgcatccgc agcccctgcg gaatcggccg ccgggcgcag
      721 cgactggctg gcgcgcctgc gcagcggact gcgcaagacc gggtccagca tcagccaggt
      781 cttcaccggc gcacagatcg gtgacgaact ttatgaggag ctcgaggcgg ccttgctgca
      841 ggccgacgcc ggcatgaagg cgacagagta cctgctcgcc gacctgaaga ggcgtgtcaa
      901 gcgcgccggc gccaccgatc cggccgcggt caaggaactc ctcgccgacg cgatcacgga
      961 tctcctcgcg ccgctcgagc ggccgctgcg cgtcggccag ccttcaccga ccgtcatcat
     1021 ggtggtcggg gttaacggcg ccggcaagac gacgacgatc ggcaagctca cgcgccatct
     1081 cgtcaacgcc ggacagaagg tgatgctggc cgccgccgat acgttccgcg ccgcggcgcg
     1141 cgagcaactg accgtctggg ccgggcgtgc cgatctgccg ggtgcgcaat cgaagggtcg
     1201 tgtcgagatc gtcagccagg agggaggcga tcccgccggc gtgaccttcg atgcggtggt
     1261 ggccgcgaag gcgcgtggtt gcgatgtcgt gctcgccgat acagcggggc gtctgacgac
     1321 gcagctgcac ctgatggagg agctgaagaa gatccgccgc gtcatcggca aggcgcagga
     1381 aggagcaccg cacgaggtgc tgctcgtcct cgacggcaac accggccaga atgcccttgc
     1441 gcaggtgcag ctcttcgacg ccgcgttgca actgaccggc ctcgtcatca ccaagctcga
     1501 tggcaccgcg aagggcggcg tgctcgccgc gatcgcgctc tggtcgcagt cgcgtccgag
     1561 cccgatggcg gtctatttca tcggcgtggg cgagaagctg gaggacctgc agaccttcga
     1621 cgcacgcgag ttcgcgcagg ccctgctcgg ctgaacccga gcgcgaccgg actcagcctg
     1681 tttcgcgtcg gcgcggcgga ggcagggtgg acgactcgga gtcgagatcg tcgaaccagg
     1741 tcgatggact cggctcggcc aattcgatga cctcgatcac ttcgtcatgg gacgaatcgc
     1801 ggtcggtgtc ttcgaacggg ttgcgagcct ccaccagcac ggctgcggcg acgggcgccg
     1861 acttgcgcga ggccatcgcc accggaactg ccggcatctc cggcacgatg ctcgcccgcg
     1921 cggcctcgac cgatggcagc gactcctcgt tccacacgtg gagcggaatg ttcacggcct
     1981 tgagcgagcg cgtcacccgg tcgaggcgcc ggcgcaggcg atcgctcagc tgcgcgtcgg
     2041 gcggccgcac atcgatgacg gcgacgacct gcgaggtcac gtcgcacacc acgaaatcga
     2101 cgcattggct gcccaggcgg cgcatccact cggcgtacga attgcgcttg ggcacgttca
     2161 tgaagcgcgc gatcggcacc tgggccagga tcatgtagcc gggcagggcg agcttgagcg
     2221 tgctgtaggc gagcctctcg gacgtgcgca gcacccgcgc cgcctcgggc ggccagccga
     2281 tcagcgtgtc gagccggtcg ccctcggcca tcatcgtatc gttgggcgcg ggccgccgtt
     2341 tcctggacca ccagtacaac agcgccgccg cagcgatcgc gagcccgaaa atcagatacg
     2401 cgtccatcgg cttcagcgca tcccgcccat gccaccgagc gccttcatgc cacccatgcg
     2461 tttcatcatc ttcatcatgc cgccgccctt catcttcttc atcatgtcgc gcatctgccc
     2521 gaactggttc agaaggcggt tcacttcctg aacctgcacg ccggcgccgt tggcgatccg
     2581 gcgcttgcgc gtggccttca gcaactcggg cttgcgccgc tcgagcggcg tcatcgaaca
     2641 gatgatgccc tccatgcggc gcacgtcgcg ttcggcccga tccatgtcgg cgggcgccat
     2701 gttcgcagct tttccggtca gctgcgaggg gagcttgtcc atcagcccgg cgaggccgcc
     2761 catcttcttc atctgcgaga tctgggacag gaagtcgttc aggtcgaagc tgtcgccggc
     2821 cttgaccttg tcggccagtt tctgcgccgc ggcgagatcg acgcccttct gcacctcctc
     2881 gacgaggccg acgatgtcgc ccatgccgag gacgcggccg gcgtggcgct gggcgtcgaa
     2941 gagttccagg ccgtcgagct tttcactggt gccggcgaac ttgatcggca ctcccgtgac
     3001 gctgcgaacc gagagcgccg cgccgccgcg cgaatcgccg tccatcttgg tcagcacgat
     3061 gccggtcagc ggcagcgctt ccttgaaggc cttggcggtg ttgatcgcgt cctggccctg
     3121 catggcatcg accacaaaca gggtttcgac cgggttcagc accgcatgca gctccttgat
     3181 ttcgcgcatc agcg
//
LOCUS       DASVHM010000853        13529 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_207334, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000853 DASVHM010000000
VERSION     DASVHM010000853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 13529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13529
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207334"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..249
                     /locus_tag="VF308_15640"
     CDS             <1..249
                     /locus_tag="VF308_15640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010461193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEX7438137.1"
                     /translation="TPDEAMNKAGCMACHAKDKKIVGPAFKDIAAKYKGQDVTAKLME
                     KVRKGGSGNFGPVPMAPNPPDKINDADLKAAVESILKS"
     gene            285..596
                     /locus_tag="VF308_15645"
     CDS             285..596
                     /locus_tag="VF308_15645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005797330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX7438138.1"
                     /translation="MVLLACGPALAQGVPAARAAELVRIVRQDCGSCHGMRLTGGLGP
                     ALTREALADKPPSALAATIFHGRPGTPMPGWRGLLSEADAIWIAERLASGFPEERGAT
                     P"
     gene            593..1777
                     /locus_tag="VF308_15650"
     CDS             593..1777
                     /locus_tag="VF308_15650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020228063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome D1 domain-containing protein"
                     /protein_id="HEX7438139.1"
                     /translation="MKRRDLLGALAVAPLLPGCATPADSAPSGSGDLGVVVERSRGTL
                     ALVNTSRRTLLAEIGGLGDLSHASVVFSRDGAIAYVFGRDGALSKVNLLTRRVERRLM
                     QAGNSIGGAISQDGSLVAAQNYTPGGIKVFDAQSLALVADIPAEHAPGKTSRVVGLAD
                     LPGQRFIFSLFDADAIWIADLSQRSQPALVKLEGVGRQPYDALVTPDGRHYIAGLFGE
                     DGLALVDLWDDVPTVRRILAGYGRGEQPLPVYKMPHLRGWAVAGRHAYLPAIGRHEVL
                     VVDTSSWQEVGRIAVAGQPVFVMAQPDGRQVWVNFAVPDYDRVQVIDSRSRRIVRTIS
                     PGKAVLHMEFTPRGEAVWISSRDANRVSVIDTQRFETLATLDISEPSGVFFTSRAARM
                     GF"
     gene            1779..2783
                     /locus_tag="VF308_15655"
     CDS             1779..2783
                     /locus_tag="VF308_15655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005797325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX7438140.1"
                     /translation="MSALAFADLRFSLLNDWQHDFPIVATPFATIGAACGVEAESVID
                     AYRELLADGAISRIGGVWGAGAAGAALLCAFAVPAERLDAVAAIVSAHPGVNHNYERE
                     HRHNLWFVVTGHDATAVDESVDTLEAQTGCRALRLRMQRAYRIDLGFDLRDPMAARCR
                     ASAQRVRRVQPADEPLAALLEDGLPLVAKPYEAWADALRMRTEHVHGMLERWLREGTL
                     RRFGVIVRHHEAGFRHNAMTVFDVPDDDVDACGERLAGERGVTLAYRRERAEGWPYNL
                     YCMVHGRDRSEVEAAIAAAIACSGLQARACAVLFSRRRFKQAGARYFRRRRVAEASVA
                     "
     gene            2780..3274
                     /locus_tag="VF308_15660"
     CDS             2780..3274
                     /locus_tag="VF308_15660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013953872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX7438141.1"
                     /translation="MSGSKLLPLGVDARDARLIDRLHGDLPLADHPFAVVGAELGMDE
                     DEVLERLRRLLSQGVLTRMGPLYHIERAGGKFVLAALEVPEERFDEVAALVNALPEVA
                     HNYRREHAFNMWFVVATESAAQCDAALAVIAQATGLKVHAFPKEREYFVGLRLPTVAN
                     RGDS"
     gene            3276..3758
                     /locus_tag="VF308_15665"
     CDS             3276..3758
                     /locus_tag="VF308_15665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020228060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX7438142.1"
                     /translation="MRLAEFDRRLIAATQSGLPLVPRPYEAVGAMLGVSSDEVRERFA
                     ELLASGLVRRIGAVPNHYRLGYSANGMTVWDVDDARVDELGDRVGALPRVSHCYRRPR
                     ELPRWPYNLFAMLHGRSREEVERQRGEVRALLGDACRGDAVLYSSAILKKTGLRLPEP
                     "
     gene            3761..4966
                     /gene="nirJ"
                     /locus_tag="VF308_15670"
     CDS             3761..4966
                     /gene="nirJ"
                     /locus_tag="VF308_15670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046500 - S-adenosylmethionine metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme d1 biosynthesis radical SAM protein NirJ"
                     /protein_id="HEX7438143.1"
                     /translation="MFRISHFMRLLAAAERHGTFAAPRRASPPGPVVIWNLIRRCNLT
                     CTHCYALSADHEYAGELSNGEVCTVMDDLKQFGVPVLILSGGEPLLRADLFEIAARAK
                     AMGFYVGLSTNGTLIDAPVAERVAAAGFDYVGISLDGLAATHDKFRRMQGAFAKSHAA
                     VRLLRARGVKVGLRFTMTALNAHDLPALLQLMRDEDVDKFYFSHLNYAGRGNIHRAKD
                     AQFAATRDALELLFERAWRAAEEGRDEEYVTGNNDADGPYLLQWAERRLPQWHAVLRA
                     HLVAWGGNSSGVNVANIDNLGNVHPDTMWWHHSLGNVRERPFSAIWADESEPLMRGLK
                     ARPRPVEGRCAQCAYFDICGGNTRVRAQQVTGNPWAEDPGCYLDDSEIGVAPGAQRVA
                     LKPFEHVAH"
     gene            4969..6546
                     /locus_tag="VF308_15675"
     CDS             4969..6546
                     /locus_tag="VF308_15675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012356847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome D1 domain-containing protein"
                     /protein_id="HEX7438144.1"
                     /translation="MSDAVRPGIWLGPALALLTFAAGAASPGDPGVLYQQHCAACHGA
                     QRTGVMGPALVPESLERLRRPDAIGVITRGRAATQMPPFGDKLSGDEIAALAQWIYTP
                     VSPAPVWGDAEIRASRLQVADAAALPNRPRWSADPMNLFVVVEGGDHHVSLVDGDRFE
                     TIHRFPSRYALHGGPKFSPDGRFVYFGSRDGWITKYDLWNLTVVAEVRAAINTRNVAV
                     SGDGRWVLAANYFPHTLALFDSDLQLVKTFAATTLDGKKSSRVSAVYDAAPRHSFVVA
                     LKDIAELWEISYDRAAEPIHDGYVHDYRMGEAIAKPGYLNARRTPLEEPLDDFFFDQD
                     YRNAVGATRPGANGKFAAQVVNLDVRRKVADLPIAGMPHLGSGITFPWNGSTVLASPN
                     LRDGALDVIDMKTWKQVRTIPTPGPGFFIRSHESTPYAWADSMLSPTAKDTLTILDKR
                     TLEVVAQVREPGRTLAHVEFTKDGRYALASLWEDDGALIVYDAATLKEVKRLPMKKPV
                     GKYNVWNKISRSEGTSH"
     gene            complement(6608..7297)
                     /locus_tag="VF308_15680"
     CDS             complement(6608..7297)
                     /locus_tag="VF308_15680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEX7438145.1"
                     /translation="MDERTFDLPRYLAVLPLFNDMQPAELQRLADGSQLRRLGRGDTV
                     FHVGQPCEEFHVTVVGQVKLFAISPSGQEKVIELIGPGNSFAEAFMFIGKPYMVNAQA
                     LTDTLLLSVGKKAVLEEIALDPRFALRMLAGISRRLHGLVHDVQGYALHSGLQRVIGY
                     LLRDQGETDSNSITVSLPVSKGTIASRLSLTPEYFSRVLHELEASGLIEIDKREIRIP
                     DAKRLAAYQPA"
     gene            complement(7317..8210)
                     /locus_tag="VF308_15685"
     CDS             complement(7317..8210)
                     /locus_tag="VF308_15685"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HEX7438146.1"
                     /translation="MRRLAWLCAVTVLAVTTLSAFIRLSNAGLGCPDWPQCYGERGVE
                     AAAGGARSDEVTATVVARLAHRVMAVLALLIVVVLIMVCFSERPRLRAQGGVAIALLA
                     LALFLAVLGRWSSGARVPAISIANLIGGFAMLALSLRLAIRAEAPPPLRQRVAAVAAV
                     LLLLAQVAVGGLVSASHASLSCVGWSDCAAAARAVPWSTLDPWREPLLSAGPPFNAAG
                     ALSQSIHRVTALLLVPVLLFLAIRARRGGRPRIAAALIALLAAQLIAGLAMAQGSLPL
                     GLALLHNLLAACLLATLVLLV"
     gene            8435..8590
                     /locus_tag="VF308_15690"
     CDS             8435..8590
                     /locus_tag="VF308_15690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438147.1"
                     /translation="MNDTESSRERVPLMQQLLDNPFLLLFIGVMVPMVVYTLWGVIDI
                     LTVPLAK"
     gene            8645..9184
                     /locus_tag="VF308_15695"
     CDS             8645..9184
                     /locus_tag="VF308_15695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C oxidase subunit II"
                     /protein_id="HEX7438148.1"
                     /translation="MSAILPPAERLWWKHPLDRVEGTWIVIALVWCLMMFVMMVGWHV
                     YGRQNLSPETYRTNPEQFSAKAQAMVDKYTVRTETADKIPVVHPPAGSDVYLVARLWA
                     WWPIIELEKDKTYRLHLTSMDYNHGFSLQPTNINIQVVPGFEHVVKVTPNQSGQFSVV
                     CNEYCGINHHTMVGRIYVK"
     gene            9198..10949
                     /locus_tag="VF308_15700"
     CDS             9198..10949
                     /locus_tag="VF308_15700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEX7438149.1"
                     /translation="MSTATYRAPGAAPAGPIGPTGVTYRTCPRSGLQFEGQAEKLMVA
                     NAVTAVVFLLIGGILAIGVVLTRWPAVHWLAADTFYQVLTAHGLDMLIFWIIFFEVAV
                     LYFCSSTLLRCRIATPKIAWLAFGLMLIGALTNNYAVFDGGSSVMMTSYVPMMAAPSF
                     YLGLILFAVGALIACFVFFGTLVIAKRDKTYQGSVPLVTFGAITAAIIAVFTITSGAI
                     ILIPTFLMSIGVVKSVDPLVYRTIWWAFGHSSQQINVAAHISIWYAVAAIAFGAKPMS
                     ERVSRGAFLLYILFLQLASAHHLLADPGVSTAWKVVNTSYFMYFAVLASMIHGLTIPG
                     AIEVAQRQKGYTKGLFEWLRKAPWGNPVFSGMFISLIGFGSLGGISGVMMGTAQLNMI
                     IHNTIYVPGHFHATVVVGTTLSFMALTYFLIPVLFRREMIAPGLAKLQPYLFGLSMYF
                     FCLVMMGAGTLGVSRRHWDMAFNGAALAYEWPGAAYLMMGLVGIAGVAAIVGGAIYIY
                     VTVGSLLWGKRLDRGSVSPTFTPIPPTPAGAAVQTYGSAGFAAPGTFVLAMVFLTAFV
                     LYYFINWKYLSQVWGLS"
     gene            10964..11869
                     /gene="cyoE"
                     /locus_tag="VF308_15705"
     CDS             10964..11869
                     /gene="cyoE"
                     /locus_tag="VF308_15705"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HEX7438150.1"
                     /translation="MSSLPIPATSRAGLRFREVVGLFKLRIGVFIMLTALVGYLVTPG
                     PGLGAAQVLVLALSVLLASASAGAFNQYAEADSDRLMARTRNRPFATGALPRTPAWLW
                     LMAGMLALAVAAAWWTTNAMAALYVFLGAFFYGVVYTLWLKRRSSLNIVVGGLAGSFA
                     ALAGAAAVDPGVGVHGWLLALVLFLWTPPHFWSLAIAGQADYAAAGVPMLPVVVGAER
                     AARIVYFSVVALVLASLLPVFFGAGWIYLAGALGGGLYFAFKARALAAAPGRATAIAS
                     FLASLVQLGVLLAAASIDGAARSGW"
     gene            12098..12817
                     /locus_tag="VF308_15710"
     CDS             12098..12817
                     /locus_tag="VF308_15710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEX7438151.1"
                     /translation="MRASQAAVGRRIGEHTLLDRDGSVVRLSSYRGKPLLVSFIYTGC
                     FQVCPTGTRALHQAVRALEKRFGTGRYSVVSIGFNQPADSPAAMKAFAAQNGIDLPHW
                     SFLSPPASDVEALTRDFGFSFQATPAGFDHVLQVTLVDAEGRIVRQVYGGEVAPDALG
                     EPLTLLVASQPLPLQSGLAELIDRVRILCTVYDPRTGTYRVDYSLALEVAGGLTFAIA
                     MFLYLLNEWRLRRAARRRSQA"
     gene            12879..>13529
                     /locus_tag="VF308_15715"
     CDS             12879..>13529
                     /locus_tag="VF308_15715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013722958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HEX7438152.1"
                     /translation="MPVDGADRDRSDTNHAHTDRSRAQRAWQRLEGAFDRVFGAAANP
                     LRHLGALGFLFFWWLVGSGIYLYAALDTSAAAAYESIARLSRQPWYVGGWLRSAHRYA
                     ADGFVLVMVLHLVREWSLGRFRAFRRHSWWTGIPLLLFAFASGIGGFWLHWDQLGQFS
                     AEATAEWLDALPVFAAPLSRNFVNIAAVGDRLFSLFVFVHVGVPLLMLFGLWFHVQR"
BASE COUNT         1995 a         4755 c         4563 g         2216 t
ORIGIN      
        1 acccccgacg aagcgatgaa caaggcgggc tgcatggcct gccacgccaa ggacaagaag
       61 atcgtcggcc cggcgttcaa ggacatcgct gccaagtaca agggccagga tgtcaccgcc
      121 aagctgatgg agaaggtgcg caagggggga tccggcaact tcggcccggt gccgatggcg
      181 ccgaacccgc ccgacaagat caacgacgcc gacctgaagg cggcggtcga gtcgatcctc
      241 aagtcctgag gcagggagac gatgtgcgct cggtcggcgt gctgctggtg ctgctggcgt
      301 gcgggcctgc gctcgcccag ggcgtccccg cggcacgcgc ggccgagctc gttcgcatcg
      361 tccggcagga ctgcggctcc tgccacggca tgcggctcac cggcggcctc ggcccggcgc
      421 tgacgcgcga ggcgctcgcc gacaagccgc cttccgcact cgccgcgacg atcttccacg
      481 gccggccggg gacgccgatg cccggctggc gcggcctgct cagcgaggcc gatgcgatct
      541 ggatcgccga gcggctggcc agtggctttc cggaagagcg gggtgccacg ccatgaagcg
      601 ccgcgacctg ctcggcgccc ttgccgtggc gccgctgctg cccggctgcg ccacgcccgc
      661 ggactctgca cctagcggca gcggcgacct cggcgtcgtc gtcgaacgat cgcgcggcac
      721 gctcgcactc gtcaatacca gtcggcgcac gctgctcgcc gagatcggcg gtctcggcga
      781 cctgtcgcac gcctcggtgg ttttctcgcg cgacggcgcc atcgcctacg tgttcggccg
      841 cgacggcgcg ctgagcaagg tcaacctgct gactcgtcgc gtcgagcggc gattgatgca
      901 ggcaggcaac tcgatcggcg gcgcgatctc gcaggacggc tcgctcgtcg cggcgcagaa
      961 ctacacgccg ggcgggatca aggtgttcga cgcccagagc ctggcgctcg tcgccgacat
     1021 cccggccgag cacgcgccgg gcaagacctc gcgcgtggtc ggtctcgccg atctccccgg
     1081 ccagcgtttc atcttctcgc tcttcgatgc cgacgcgatc tggatcgccg acctctcgca
     1141 gcgctcgcag cccgcgctcg tcaagctcga gggcgtcggt cgccagccct acgatgcgct
     1201 cgtcacgccc gacggccgcc actacatcgc cggcttgttc ggtgaagacg gcctggcgct
     1261 cgtcgatctc tgggacgacg tgccgacggt gcgccgaatc ctcgccggct acggccgcgg
     1321 cgagcaaccc ctgccggtct acaagatgcc gcacctgcgc ggctgggccg tggccggtcg
     1381 gcacgcttac ctgccggcga tcggtcgcca cgaggtgctg gtcgtcgaca cctccagctg
     1441 gcaggaggtc ggccggatcg ccgtcgcggg gcagccggtg ttcgtgatgg cgcagcccga
     1501 cggcaggcag gtctgggtca acttcgccgt tcccgactac gaccgcgtcc aggtcatcga
     1561 cagccgctcg cggcgcatcg tgcggacgat ctcgcccggg aaggccgtcc tgcacatgga
     1621 gttcacgccg cgcggcgagg cggtgtggat cagctcgcgc gacgccaacc gcgtctcggt
     1681 gatcgacacg cagcgcttcg agaccctggc cacgctcgac atcagcgagc cgagcggcgt
     1741 gttcttcacc agccgcgccg cgcgcatggg gttctagcgt gagcgcactg gcctttgccg
     1801 atctgcgctt cagcttgctg aacgactggc agcacgactt cccgatcgtc gccacgccgt
     1861 tcgccacgat cggcgcggcc tgcggtgtcg aagcggagtc ggtgatcgac gcctaccgcg
     1921 agctgctcgc cgatggcgcg atcagccgca tcggcggcgt ctggggtgcc ggcgccgcag
     1981 gcgctgcgct gctctgcgcc ttcgcggtgc cggcagagcg cctcgacgcc gtcgccgcga
     2041 tcgtctcggc ccatcccggc gtcaaccaca actacgagcg cgagcaccgg cacaacctct
     2101 ggttcgtcgt cacgggccac gacgcgacag cggtcgacga atcagtcgac acgctcgagg
     2161 cgcagaccgg ctgccgggcg ctgcgcctgc gcatgcaacg ggcctaccgg atcgacctcg
     2221 gtttcgacct tcgcgacccg atggccgcgc gctgccgcgc gtccgcgcag cgcgtgcgcc
     2281 gggttcagcc ggccgacgag ccgctcgccg cgctcctgga agacggactg ccactggtcg
     2341 cgaagcccta cgaggcctgg gccgatgcgc tgcgaatgcg aacggaacac gtgcacggga
     2401 tgctcgagcg ctggctccgc gagggcacct tgcgccgctt cggcgtgatc gtccgccacc
     2461 acgaagcggg ctttcgccac aacgcgatga cggtgttcga cgtccccgac gacgacgtcg
     2521 atgcctgcgg cgagcggctc gccggagagc gcggcgtgac gctggcgtat cggcgcgagc
     2581 gtgccgaagg ctggccctac aacctgtact gcatggtgca tggccgagac cgctccgaag
     2641 tcgaggcggc gatcgctgcc gcgatcgcgt gcagcggact gcaggcgcgc gcgtgtgcgg
     2701 tgttgttcag ccgccggcgc ttcaagcagg cgggcgcgcg atatttccgc cgccgccgcg
     2761 tcgccgaagc gagcgtcgca tgagcgggtc gaagctgctg ccgctcggtg tcgatgcccg
     2821 cgacgcacgg ctcatcgatc gcctgcacgg cgacctgccg ctggcggacc acccgttcgc
     2881 tgtcgtcggc gccgagctcg gcatggacga ggacgaggtt ctcgagcgct tgcgccgact
     2941 gctctcgcaa ggcgtgctga cacggatggg ccccctgtat cacatcgagc gcgccggcgg
     3001 caagttcgtg ctcgccgcgc tcgaggtgcc ggaagaacgc ttcgacgagg tggccgcgct
     3061 cgtcaacgcg ctgcccgagg tggcgcacaa ctaccggcgc gagcacgcct tcaacatgtg
     3121 gttcgtggtc gcgaccgagt ccgctgcgca atgcgacgcg gcgctggccg tgatcgccca
     3181 ggcgaccggg ctgaaggttc acgcttttcc gaaggagcgc gagtacttcg tcggcttgcg
     3241 gctgcccacc gtcgccaacc ggggagatag ctgacgtgcg cctggccgag ttcgaccgcc
     3301 ggctgatcgc cgccacgcaa agcggcctgc cgctcgttcc tcggccgtac gaggcggtcg
     3361 gagccatgct cggggtcagc agcgacgagg tgcgcgagcg cttcgccgag ctgctcgcca
     3421 gcgggctggt ccgacgcatc ggcgccgttc ccaatcacta ccggctcggc tactccgcca
     3481 acggcatgac ggtctgggac gtcgatgatg cgagggtcga cgagctcggc gaccgcgtcg
     3541 gcgcgctccc gcgcgtgagc cactgctacc ggcgtccgcg cgagctgccg cgctggccct
     3601 acaacctgtt cgcgatgctg cacggccgct cgcgcgagga ggtcgagcgc cagcgaggcg
     3661 aagtgcgcgc tctgctcggc gatgcctgcc gtggcgacgc cgttctctac tcgagcgcga
     3721 tcctgaagaa gaccggcctg cgccttccgg agccctgatc atgtttcgca tcagccactt
     3781 catgcgcctg ctcgcggccg ccgagcggca tggcaccttc gccgcgccac gccgcgcttc
     3841 accgccgggg ccggtggtga tctggaacct gatccgccgc tgcaacctga cctgcacgca
     3901 ttgctacgcg ctctcggccg accacgagta cgcgggcgag ctgtcgaacg gcgaggtctg
     3961 cacggtgatg gatgacctga agcaattcgg cgtcccggtg ctgatcctct ccggcggcga
     4021 gccgctgctg cgtgccgacc tgttcgagat cgcggcgcgg gcgaaggcga tgggcttcta
     4081 cgtcggcctg tcgaccaacg gcaccctgat cgacgcgccg gtcgccgagc gcgtcgcggc
     4141 cgccggcttc gactacgtcg gcatcagcct cgacggcctc gccgccacgc acgacaagtt
     4201 ccgccgcatg caaggggcct tcgcgaagag ccacgccgcg gtgcggctcc tgcgcgcgcg
     4261 cggggtcaag gtcggcttgc gcttcacgat gaccgcgctc aacgcgcacg acctgcccgc
     4321 cctgctgcaa ctgatgcgcg acgaggacgt cgacaagttc tacttctcgc atctgaacta
     4381 cgccggtcgc ggcaacatcc accgtgccaa ggacgcgcag ttcgcagcca cgcgcgacgc
     4441 cctcgagctg ctgttcgagc gcgcctggcg cgccgcggag gaaggccgcg acgaagagta
     4501 cgtgaccggc aacaacgacg ccgacggacc ctacctgctg cagtgggccg agcgccgctt
     4561 gccgcagtgg cacgcggtgt tgcgggcgca tctcgtcgcc tggggcggca attcgagcgg
     4621 cgtcaacgtc gccaacatcg acaacctcgg caacgtccac cccgacacga tgtggtggca
     4681 ccactcgctc ggcaacgttc gcgagcgtcc gttctccgcc atctgggccg acgaatccga
     4741 gccgctgatg cgtggcctga aagcacggcc gcggcctgtc gagggccgct gcgcgcagtg
     4801 cgcgtacttc gacatctgtg gcggcaacac gcgcgttcgc gcgcagcagg tcaccggcaa
     4861 cccgtgggcc gaagaccccg gctgctacct cgacgacagc gagatcggcg tcgcgccggg
     4921 tgcgcagcgg gtcgctctga agcctttcga acacgtggcg cattgatcat gagcgatgcc
     4981 gtccgtcccg gaatctggct cggccccgct ctggccctgc tgaccttcgc cgcgggcgcg
     5041 gcttcgccgg gcgaccccgg cgtgctgtac cagcagcact gcgccgcctg tcacggggcg
     5101 cagcggacgg gcgtcatggg cccggcgctc gttcccgaaa gcctcgagcg cctgcgccga
     5161 cccgacgcca tcggcgtcat cacccgcggc cgtgcggcga cgcagatgcc gcccttcggc
     5221 gacaagctct ccggcgacga gatcgccgct ctcgcgcagt ggatctacac gccggtgtcg
     5281 ccggcaccgg tgtggggcga tgccgagatc cgcgcgtcgc ggctgcaggt cgccgacgcg
     5341 gccgcgttgc cgaaccggcc gcgctggtct gccgacccga tgaacctgtt cgtcgtcgtc
     5401 gagggcggcg accaccatgt ctcgctggtc gatggcgacc ggttcgagac gatccatcgc
     5461 tttccttcac gctatgcgct gcacggcggt ccgaagttca gccccgacgg gcgcttcgtc
     5521 tacttcggct cgcgcgacgg ctggatcacc aagtacgacc tctggaacct caccgtcgtc
     5581 gcggaggtgc gtgccgcgat caacacccgc aacgtcgctg tcagcggaga cggccgttgg
     5641 gtcctcgccg ccaactattt cccgcacacg ctggccctgt tcgattccga tctccaactc
     5701 gtcaagacct ttgccgcgac gaccctcgac ggcaagaaga gctcgcgagt ctcggccgtc
     5761 tacgatgcgg cgccgcggca cagcttcgtg gtcgcgctga aggacatcgc cgagctgtgg
     5821 gagatctcgt acgaccgcgc agccgagccg atccacgacg gctacgtgca cgactaccgg
     5881 atgggcgagg cgatcgccaa gccgggctac ctgaatgcgc ggcgcacgcc gctcgaggaa
     5941 cccctggacg acttcttttt cgaccaggac tatcgcaatg ccgtcggcgc gacgcgcccg
     6001 ggcgcgaacg ggaaattcgc agcgcaagtg gtcaacctcg atgtccgccg caaggtcgcc
     6061 gacctgccga tcgccggcat gccgcacctg ggctcgggca tcaccttccc ctggaacggc
     6121 agcaccgtcc tggcgagccc gaatctgcgc gacggtgctc tcgacgtgat cgacatgaag
     6181 acctggaagc aggtcaggac catccccacc ccggggccgg ggttcttcat ccgcagccac
     6241 gagtcgacgc cctacgcctg ggccgactcg atgctgagcc cgaccgcgaa ggacacgttg
     6301 accatcctcg acaagcgcac gctcgaagtg gtcgcgcagg tccgcgagcc cggccgcacc
     6361 ctcgcccacg tcgagttcac gaaggacggc cgctacgcgc tcgcgagcct ctgggaggac
     6421 gacggcgccc tgatcgtcta cgacgcggcg acgctgaagg aagtcaagcg cctgccgatg
     6481 aagaagcccg tcggcaagta caacgtgtgg aacaagatca gcaggtcgga agggacgtcg
     6541 cactgaagtc gtgctgcgac ctcgagctgt ccgggccggc agcgtgcgcg gcgcgggcga
     6601 aggtggctca ggccggctgg taggcggcga gccgcttggc gtctgggatg cggatctcgc
     6661 gcttgtcgat ctcgatcagc ccgctcgcct cgagctcgtg caggacgcgc gaaaagtact
     6721 ccggcgtgag cgacaggcgc gacgcgatgg tgcccttgct gaccggcagc gacacggtga
     6781 tcgagttgga gtcggtctcg ccctggtcac gcaacagata gccgatcacg cgctgcaggc
     6841 cgctgtgcag ggcgtatccc tgaacgtcgt gaacgaggcc gtgcaggcgc cgcgagatgc
     6901 cggcgagcat gcgcagggca aagcgggggt cgagggcgat ctcctcgagc acggccttct
     6961 tgccgaccga gagcagcaag gtgtcggtca gcgcctgggc gttgaccatg tagggcttgc
     7021 cgatgaacat gaacgcctcg gcgaagctgt tcccggggcc gatcagttcg atcacctttt
     7081 cctggcccga cggcgaaatc gcgaacagtt tcacctggcc gacgaccgtg acgtggaatt
     7141 cctcgcacgg ctggccgaca tggaagacgg tgtcgccgcg gccgaggcgg cgcagctggc
     7201 tgccgtcggc caggcgctgc agctcggccg gctgcatgtc gttgaacaac ggcaggaccg
     7261 ccaggtagcg cggcaggtcg aaggttcttt cgtccaacgg atcctcctct aagcctttac
     7321 accaggagta cgagcgtggc gagaaggcag gccgcgagca gattgtgcag cagcgcaagg
     7381 ccgagcggca gcgacccctg agccatcgcc agcccggcga tcagctgtgc ggcaagcaag
     7441 gcgatcagcg ccgctgcgat gcgtgggcgg cctccccggc gggcgcggat tgccaggaac
     7501 aagaggacgg gcacgagcag cagcgccgtg acgcgatgga tcgactggga gagcgcgcca
     7561 gccgcgttga acggcggtcc tgcgctcaag agcggctcgc gccatgggtc gagcgtcgac
     7621 caggggacgg cgcgtgccgc cgcggcgcaa tcggaccagc cgacgcagct caggctggcg
     7681 tgcgaggcgc tgaccagacc accgacggcg acctgcgcga gcagcagcag cacggcggcg
     7741 acggccgcga cacgctggcg cagtggaggc ggtgcttcgg cgcggatcgc cagccggagc
     7801 gaaagggcga gcatcgcgaa gccgccgatc aggttcgcga tcgatatcgc cggcacgcgc
     7861 gcgccgctgc tccagcgtcc gagcacggcc aggaacaatg ccagggcgag cagtgcgatg
     7921 gcgaccccac cctgggcgcg caggcgcggg cgctcgctga agcacaccat gatcagcacg
     7981 acgacgatca gcaatgcgag gacggccatc acgcggtggg cgagccgcgc caccaccgtg
     8041 gccgtgacct cgtcgcttct ggcgcctccc gccgccgcct cgacccctcg ctcgccatag
     8101 cactgcggcc agtctgggca accgagaccg gcgttcgaca ggcggatgaa ggcgctcaag
     8161 gtcgtcaccg cgagcaccgt cacggcgcag agccaggcca ggcggcgcaa gaaggaaagg
     8221 cggcgatcgg ctcgactcat ggcgtgcgcg ccacatcgat cagggccgtg gcgaggtcca
     8281 tcgtagcgcc cgcgcctgcg ccgtcgggcc acgagcgcca caacaggccg ctttcttgaa
     8341 ctggttcaag tgaggttcga cggggcctca gcagaatagg gagcaccgat tgcaagcgtt
     8401 gtgacgggcc gcgaggcccg aatccggagg actcatgaac gacaccgaat cgagccgcga
     8461 gcgcgtgccg ctgatgcagc agctgctcga caaccccttc ctgctcctct tcatcggcgt
     8521 gatggtgccg atggtggtct acacgctgtg gggcgtcatc gacatcctca ccgtgccgct
     8581 ggccaagtag ccgttgccga gtcgccgttg ccgacggcgc accgactttc ccgaggacct
     8641 gacgatgagc gcaattcttc ctcccgccga gcggctgtgg tggaaacacc cgctggaccg
     8701 tgtcgaaggc acgtggatcg tcatcgcgct ggtctggtgc ctgatgatgt tcgtgatgat
     8761 ggtcggctgg cacgtctacg gacgccagaa cctgtcgccc gaaacctatc gcaccaaccc
     8821 cgagcagttc tcggccaagg cccaggccat ggtcgacaag tacacggtgc gaaccgagac
     8881 ggccgacaag atcccggtcg tgcatccgcc cgcgggcagc gacgtctacc tggtcgcgcg
     8941 gctctgggcc tggtggccga tcatcgagct cgagaaggac aagacgtacc gcttgcatct
     9001 gacgtcgatg gactacaacc acggcttctc gctgcagccg accaacatca acatccaggt
     9061 cgttcccggc ttcgagcacg tggtgaaggt cacgcccaac cagtcgggcc agttctccgt
     9121 cgtctgcaac gagtactgcg gcatcaacca tcacacgatg gtcggccgca tatacgtgaa
     9181 gtgaagaagg cgccaccatg agcaccgcta cctatcgggc ccccggggcc gcgcccgccg
     9241 gacccatcgg acccaccggc gtcacctacc gcacctgccc gcgctccggc ctgcagttcg
     9301 agggccaggc cgaaaagctg atggtcgcca acgccgtcac ggcggtcgtg ttcctgctga
     9361 tcggcggcat cctcgccatc ggcgtcgtgc tcacgcgctg gcccgcggtg cactggctgg
     9421 ccgccgacac cttctatcag gtgctcaccg cgcatggcct cgacatgctg atcttctgga
     9481 tcatcttctt cgaggtcgcg gtgctgtact tctgctcgtc gaccctgctg cgctgtcgca
     9541 tcgcgacgcc gaagatcgcc tggctcgcct tcggcctgat gctgatcggc gcgctgacca
     9601 acaactacgc ggtgttcgac ggcggctcca gcgtgatgat gacgagctac gtgccgatga
     9661 tggcggcgcc gagcttctat ctcggcctga tcctgttcgc cgtcggcgcg ttgatcgcgt
     9721 gcttcgtctt cttcggcacg ctggtcatcg ccaagcgcga caagacctac cagggctcgg
     9781 tgccgctggt cacgttcggc gcgatcaccg cggcgatcat cgcggtgttc accatcacct
     9841 cgggcgcgat catcctgatc ccgacgtttc tgatgtcgat cggcgtcgtc aagtcggtcg
     9901 atccgctcgt ctaccgcacg atctggtggg ctttcgggca ctcgtcgcag cagatcaacg
     9961 tcgcggcaca catctcgatc tggtatgccg tcgcggcgat cgcgttcggc gccaagccga
    10021 tgtccgagcg ggtgagccgc ggcgcgttcc tgctctacat cctgttcctg cagctcgcca
    10081 gcgcgcacca cctgctggcc gacccgggcg tgagcacggc gtggaaggtc gtcaacacga
    10141 gctacttcat gtacttcgcc gtgctggcct cgatgattca cggcctgacg atccccggcg
    10201 cgatcgaagt cgcccagcgg cagaagggct ataccaaggg cttgttcgag tggctgcgca
    10261 aggcgccctg gggcaacccg gtgttctccg ggatgttcat ctcgctgatc ggcttcggct
    10321 ccctcggcgg catctcgggc gtgatgatgg gcaccgcgca gctcaacatg atcatccaca
    10381 acacgatcta cgtgccgggc cacttccacg cgacggtggt cgtcggcacg accttgtcgt
    10441 tcatggcact gacttatttc ctgattccgg tgctgttcag gcgcgagatg atcgctccgg
    10501 gcctcgccaa gctgcagccg tacctgttcg gcctgtcgat gtacttcttc tgcctcgtga
    10561 tgatgggcgc gggcaccctc ggcgtctcgc gccgccactg ggatatggcg ttcaacggcg
    10621 ccgcactggc ctacgaatgg ccgggtgccg cctatctgat gatggggctc gtcggcatcg
    10681 ccggggtggc ggccatcgtc ggcggcgcga tctacatcta tgtcaccgtg ggctcgctgc
    10741 tctggggcaa gcggctcgac cgcggcagcg tcagcccgac gttcacgccg atcccgccga
    10801 cccccgccgg cgcggctgtg cagacgtacg gatcggcagg cttcgcggcg cccgggacct
    10861 tcgtcctcgc aatggtcttc ctgaccgcgt tcgtgctgta ctacttcatc aactggaagt
    10921 atctgtccca ggtctggggc ctgagctgat cggaggcacg acgatgtcat cgttgccgat
    10981 ccccgcgacg agtcgcgccg gccttcgctt tcgcgaggtc gtcgggctgt tcaaactgcg
    11041 catcggcgtg ttcatcatgc tgacggcgct cgtcggctac ctggtcacgc cgggccccgg
    11101 gctgggtgcg gcccaggtgc tcgtgctggc gctctcggtg ctgctcgcgt cggccagcgc
    11161 gggcgccttc aaccagtacg ccgaggccga ctccgaccgt ttgatggcgc gcacacggaa
    11221 ccgccctttc gcgaccggcg cgctgccgcg aacgccggcc tggttgtggc tgatggccgg
    11281 catgctcgcg ctcgccgtcg ccgccgcctg gtggacgacg aatgccatgg cggcgctcta
    11341 cgtgtttctc ggcgccttct tctacggcgt ggtctacacg ctgtggctga agcggcgcag
    11401 cagcctgaac atcgttgtcg gcggcctcgc cggcagcttc gcggcgctcg ccggcgcggc
    11461 agcggtcgat cccggcgtcg gcgtgcacgg ctggcttctt gcgctcgtgt tgttcctgtg
    11521 gacgccgcct catttctgga gcctcgcgat cgccggacag gctgactacg ccgcggccgg
    11581 cgtgccgatg ctgccggtcg tcgtgggcgc ggagcgcgcg gcgcgaatcg tctacttcag
    11641 cgtggtggcg ctcgtgctgg cgtcgctgct gccggtgttc ttcggcgccg gatggatcta
    11701 cctcgccggt gcgctcggcg gtggcctcta cttcgcgttc aaggctcgcg cgctcgccgc
    11761 tgcgccgggc cgagccacgg cgatcgcctc gttccttgcc tcgctggtgc aactcggcgt
    11821 gctgctggcc gccgccagca tcgatggagc ggcgcgctcg ggctggtgag ctcctgaccc
    11881 atccgtcgcc cggcccctgg gccatgaacc gatgtctgcc gcaacgatcg ccctttcaga
    11941 cctgccggac gggcagcgac gcgttgttcg cgcgagcggc gcatgggcgc tcgccatcgc
    12001 cgcaagctgt tcggtgctcg ccgcgtcggc ggcgcctgcg gagcaggccg gctctgacgc
    12061 agtcgcgacg acgacggctc tgaacgcaga cgccgccgtg cgcgcaagcc aggcggcggt
    12121 cgggcgacgc atcggcgagc acaccttgct cgatcgcgac ggaagcgtgg tgcgcctgtc
    12181 ctcgtatcgc ggcaagccgc tgctcgtgag cttcatctac acgggttgct tccaggtctg
    12241 cccgaccggc acccgcgcgc tgcaccaggc cgttcgcgcg ctcgagaagc gtttcggcac
    12301 gggtcggtac agcgtcgtca gcatcggctt caatcagccg gccgattcgc ccgccgccat
    12361 gaaggcgttc gcggcgcaga acggaatcga cttgccgcac tggtcgttcc tcagcccgcc
    12421 ggcgagcgat gtcgaggcgc tgacgcgcga cttcggcttc agcttccagg ccacgccggc
    12481 cggcttcgat cacgtgcttc aggtcacgct cgtcgatgcc gaaggacgca tcgtgcgcca
    12541 ggtctacggc ggcgaggtcg cgcccgacgc gctcggcgag ccgctcacgc tcctggttgc
    12601 cagccagcca ctgccgctgc aatcgggtct cgccgagctg atcgatcgcg tccgaatcct
    12661 ctgcacggtc tacgacccga ggaccgggac ctatcgggtc gactacagcc tcgcgctcga
    12721 ggtcgcaggc gggttgacct tcgcgatcgc catgtttctg tatctgctga acgagtggcg
    12781 cctgcggcgg gcggcgcgac gccggtcgca ggcctgatcg agcatcgacg atgatgtcgc
    12841 cgcacgccgc cgctgtcgtc ttcggagccg cggccgccat gcccgtggat ggcgccgaca
    12901 gggatcgctc ggacacgaat cacgcccaca ccgatcgctc ccgcgcgcag agggcctggc
    12961 agcgcctgga gggtgcgttc gaccgggtct tcggcgccgc ggccaatccg ctgcgccatc
    13021 tcggcgcgct cggcttcctc ttcttctggt ggctcgtcgg cagcggcatc tacctgtacg
    13081 cggcgctcga cacctcggcc gccgccgcct acgaatcgat cgctcggctc tcgcgccagc
    13141 cgtggtacgt cggcggctgg ctgcgcagcg cgcaccgcta tgccgccgac gggttcgtcc
    13201 tcgtcatggt gctgcacctc gtccgcgaat ggtcgctcgg ccgcttccgg gcgttccggc
    13261 gccactcgtg gtggaccggc attccgctcc tgctgttcgc gttcgccagc ggcatcggcg
    13321 gcttctggct ccactgggac cagctcggcc agttctccgc cgaggcgacg gccgagtggc
    13381 tcgatgccct gccggtgttc gccgcgccgc tgtcgcgcaa tttcgtcaac atcgcggcag
    13441 tcggcgaccg gctgttctcg ttgttcgtct tcgtccatgt cggcgtgccg ctgctgatgc
    13501 tgttcggcct ctggtttcac gtccagcgc
//
LOCUS       DASVHM010000854         2793 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1147865, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000854 DASVHM010000000
VERSION     DASVHM010000854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1147865"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1185)
                     /locus_tag="VF308_15720"
     CDS             complement(<1..1185)
                     /locus_tag="VF308_15720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEX7438153.1"
                     /translation="MTTLICDCNKTMTLNGPALRQVLGPEAGAGLETVHSTLCRREAG
                     AFQRAAKGHDDLLVACTQESRLFLELNESTEGAAGIAERPIRFVNIREAAGWSKDAAA
                     ATPKIAALIAAAQLAPPEPVPVVSYRSAGRVLVIGPADSGMRAARMLADKLDVSLLMP
                     RPGGTLPQERQVAVHAGSVTRLSGWLGAFEVSWQSDNPIDLDLCTRCNACIEVCPEQA
                     IDFSYQIDLSKCTNHRDCVRVCDAAGAIDFQRAPQAVTEAFDLVLDLGATPQIAWHQP
                     PQGYFHAADDAALIDAVLQLRESVGEFEKPRFFQYKQKICAHSRNEQIGCTACIDVCS
                     AEAIRSDASGKGRTGGGGIVVEAHLCVGCGACTTVCPSGALTYATPRPDEMGLRIRTL
                     LAT"
     gene            complement(1109..1741)
                     /locus_tag="VF308_15725"
     CDS             complement(1109..1741)
                     /locus_tag="VF308_15725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3306 domain-containing protein"
                     /protein_id="HEX7438154.1"
                     /translation="MSDADDGFLARWSKRKAGVQGGLAEPTPKPAQSVEVAATPALPA
                     GAAAAHAVPIPETPQAAAADAVPLPTMEDVALLTRGSDYSPFVRPGVDPGVSNAAMKK
                     LFSDPHFNVMDGLDTYIDDYGKLDPIPLSMLRQMNQAKFLGLFDDDEKNAAAPAASTD
                     GAALPAVAQSPALEEPVPPARETRTDDDPDLRLQQDDDVERPGAAPGSGA"
     gene            complement(1738..2217)
                     /locus_tag="VF308_15730"
     CDS             complement(1738..2217)
                     /locus_tag="VF308_15730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3305 domain-containing protein"
                     /protein_id="HEX7438155.1"
                     /translation="MERPSVQVAVVMEREAAPNQWEDWRFRIVEVVPHEDAFGSAVRV
                     LRDDGRLRRTLYPGFTLELYRDQAEGYWLNLSSGTPVWFVVWRIDDEDPSRAWPETVS
                     VSYGEAGRWLDAQERVDNVPLPPDLAAWLQAYTDEHYRPEPKKRRRPQSFVSPDERK"
     gene            complement(2221..>2793)
                     /locus_tag="VF308_15735"
     CDS             complement(2221..>2793)
                     /locus_tag="VF308_15735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011806575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HEX7438156.1"
                     /translation="GFLVEADNPMIWRGPMATQALEQLLRQTNWGDLDYLIVDMPPGT
                     GDIQLTLSQRVPLTGAVIVTTPQDIALLDAKKGIKMFEKVGVPILGIVENMAVHVCEK
                     CGHIEHIFGEEGGKRLAAEYHMDYLGALPLNLSIRVQADNGRPSVVSDPDGEIAGLYK
                     SVARQVAVKIAQRAKDFSSKFPTISISKDT"
BASE COUNT          423 a          958 c          948 g          464 t
ORIGIN      
        1 ggtcgcgagc agcgtgcgga tgcgcaggcc catctcatcg ggccgcggcg tggcatacgt
       61 caacgcgccg ctcggacaca ccgtcgtgca cgcgccgcag cccacgcaga gatgcgcctc
      121 gacgacgatg ccgccgccgc ccgtcctgcc cttccccgac gcgtcgctgc ggatcgcttc
      181 ggccgagcag acgtcgatgc aggcggtgca gccgatctgc tcgttgcggc tgtgggcgca
      241 gatcttctgc ttgtactgga agaacctggg cttttcgaac tcgccgacgc tctcgcgcaa
      301 ttgcagcacg gcgtcgatca acgccgcgtc gtcggccgca tggaaatagc cttgcggcgg
      361 ctggtgccac gcgatctgcg gcgtggcgcc cagatcgagc acgaggtcga acgcctccgt
      421 gacggcctgc ggcgcacgct ggaaatcgat ggcccccgcg gcgtcgcaga cgcgcacgca
      481 gtcccgatgg ttcgtgcact tcgacagatc gatctgatag ctgaaatcga tcgcctgctc
      541 ggggcagact tcgatgcagg cattgcaacg ggtgcacaga tcgaggtcga tcgggttgtc
      601 gctctgccag ctcacctcga aggcgccgag ccaacccgac agtcgcgtca cgctgccggc
      661 gtgcaccgcc acctggcgct cctgcggcag ggtgccgccg ggccggggca tcagcaggct
      721 cacgtcgagc ttgtcggcga gcatgcgcgc cgcgcgcatg cccgagtcgg ccggcccgat
      781 cacgagcacg cgcccggccg agcgatagct cacgaccggc accggttcag gcggcgccaa
      841 ttgcgccgcg gcgatcaatg cggcgatctt cggcgtcgcc gcggcggcat ccttcgacca
      901 gcccgcggcc tcgcgaatgt tgacgaaacg gatcggccgc tcggcgatgc ccgccgcccc
      961 ttcggtcgat tcgttcaact cgaggaagag gcggctttcc tgcgtgcagg cgaccagcag
     1021 gtcgtcgtgg cccttggcgg cacgctggaa cgcgccggcc tcgcgccggc acaaggtcga
     1081 atggacggtc tcgaggcccg cgccggcctc aggccccaga acctggcgca gcgccgggcc
     1141 gttcaacgtc atcgtcttgt tgcagtcgca gatcagggtc gtcatcggtg cgggtttcgc
     1201 gagcgggcgg tacgggttct tcgagtgcag gagactgtgc caccgcgggc agcgcggcgc
     1261 catcggtaga agccgccgga gccgcggcat tcttctcgtc gtcgtcgaag agaccgagga
     1321 acttcgcctg gttcatctgg cgcagcatcg agagcggaat cggatcgagc ttgccgtagt
     1381 cgtcgatgta ggtatcgaga ccgtccatca cgttgaaatg cggatcgctg aagagcttct
     1441 tcatggccgc attgctgacg ccggggtcca cgcccggccg cacgaagggc gaatagtcgg
     1501 agccgcgcgt gagcagggcc acatcctcca tcgtcggcaa cggcacggca tcggccgccg
     1561 ctgcctgcgg cgtctcgggg atcggaaccg catgcgcggc tgcggcgccg gccggcagcg
     1621 cgggggtcgc ggccacctcg acgctctgcg cgggctttgg cgtcggctcg gcaaggccgc
     1681 cttgcacgcc tgccttgcgc ttcgaccagc gcgccagaaa cccgtcgtcg gcgtcgctca
     1741 tttccgctcg tccggggaaa cgaatgactg cggccgccgg cgcttcttcg gttcgggccg
     1801 atagtgctcg tcggtgtagg cctggagcca ggcggcgagg tccggcggca gcggcacgtt
     1861 gtcgacgcgc tcctgggcat cgagccagcg ccctgcctcg ccataggaaa cgctcaccgt
     1921 ttcgggccag gcccgcgacg ggtcttcgtc gtcgatgcgc cagaccacga accacaccgg
     1981 cgtgcccgag ctgaggttga gccagtagcc ctcggcctga tcgcgataga gctcgagcgt
     2041 gaaacccgga tacagcgttc gccgcagcct gccgtcgtcg cgcagcacgc gcaccgcgga
     2101 accgaacgcg tcttcgtggg gcacgacttc gacgatccgg aagcgccagt cttcccactg
     2161 gttcggcgcc gcttcgcgtt ccatcacgac cgcgacctgg accgacgggc gctccactgc
     2221 tcaggtgtcc ttcgaaatgc tgatcgtcgg aaacttcgac gagaaatcct tggcgcgctg
     2281 ggcgatcttc acggccacct ggcgggccac gctcttgtag agcccggcga tctcgccatc
     2341 cgggtcgctg acgacgctcg gccggccgtt gtcggcctgc acgcggatcg acaggttgag
     2401 cggcagggcg ccgaggtagt ccatgtggta ctcggcggcg aggcgcttgc cgccctcctc
     2461 gccgaagatg tgctcgatgt gcccgcactt ctcgcacacg tggaccgcca tgttctcgac
     2521 gatgccgagg atcggcacgc cgaccttctc gaacatcttg atgcccttct tcgcgtcgag
     2581 gagggcgatg tcctgcggcg tcgtcacgat caccgcaccg gtcagcggca cgcgctgcga
     2641 gagcgtcaac tggatgtcgc cggtgccggg cggcatgtcg acgatgaggt agtcgaggtc
     2701 gccccagttg gtctggcgca gcagctgctc caacgcttga gtggccatcg ggccgcgcca
     2761 gatcatcggg ttgtcggcct cgaccaagaa gcc
//
LOCUS       DASVHM010000855         2180 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_495524, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000855 DASVHM010000000
VERSION     DASVHM010000855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495524"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VF308_15740"
     CDS             complement(<1..218)
                     /locus_tag="VF308_15740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     small subunit"
                     /protein_id="HEX7438157.1"
                     /translation="MATSSQKFIARNRAPRVQIEYEVELYGAEKKVQLPFVMGVLSDL
                     SGKPSEPLPPVADRKFLEVDVDNFDARM"
     gene            complement(239..1228)
                     /locus_tag="VF308_15745"
     CDS             complement(239..1228)
                     /locus_tag="VF308_15745"
                     /inference="COORDINATES: protein motif:HMM:NF018516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system ImpA family N-terminal
                     domain-containing protein"
                     /protein_id="HEX7438158.1"
                     /translation="MAEPELESLLTPISADAPCGPDLEYDPAFQAMLDAGAGKPERQY
                     GDKVYPAEPPDWPLVNEHAAALSARTRDLRVAVWLARSGARLRGLSGAVDGLRLVQGL
                     VERHWEHVNPPLDASDNNDPTARVMALAALADPAAGLGDLRAASLTGKRGALTVRDIE
                     LALGPADPMPGESVPTEDGVLQGVATSLADASGLGPVMQSGYEAAQALAASLERHLEA
                     SQAPDLVPLKKVLQRVADAGRKAVGDTSLAEAATSSAPAPRAAGTINSREDASRALER
                     VCEWIERNEPSNPAPLLIRRAQRLMSKSFIDIIRDMAPDGLKEVEKLAGTGNT"
     gene            complement(1369..2073)
                     /locus_tag="VF308_15750"
     CDS             complement(1369..2073)
                     /locus_tag="VF308_15750"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX7438159.1"
                     /translation="MYATGTARNDAVAALPSTPHEAPGWQRKLLLVDDHELVRYGAKA
                     LYTELLGVPLEWLEASTLREALDIYGRESDIDAVLLDLNLSDCKGLQGLRQFVQEFPQ
                     ARVAVFSATQDEFVIRQAQALGAVGYVPKGAVASEILGTLSALLWPPAGPARPGFAAN
                     KALFPRMPASSMYDRVAQLGPRHLEILELVLSGCNNQEISNSMRLSLGTVKNYVSSLL
                     LALDVRSRAHLVSLFR"
BASE COUNT          323 a          712 c          788 g          357 t
ORIGIN      
        1 ttcatgcgcg cgtcgaagtt gtcgacgtcg acttcgagaa acttgcggtc ggcgaccggc
       61 ggcaatggct cgctcggctt gccggacagg tcggaaagaa cgcccatcac gaatggcagc
      121 tgcaccttct tctcggcgcc gtagagctcg acttcgtatt cgatctgcac ccgcggcgcg
      181 cgattgcggg cgatgaattt ctggctgctg gtggccatgg gatgggctcc ttggtgactt
      241 acgtgtttcc ggtgccggcg agcttttcga cttccttcag gccgtcgggc gccatatcgc
      301 ggatgatgtc aatgaaactc ttgctcatca accgttgcgc gcgtcgaatg agcagcggcg
      361 ccggattgct gggctcgttg cgctcgatcc attcgcagac gcgctcgagg gcgcgacttg
      421 catcctcgcg cgagttgatg gtgccggcag cgcgcggcgc gggcgccgac gaggtcgcgg
      481 cttcggcgag gctcgtgtcg cccacggcct tgcggccggc atcggcgaca cgctgcagga
      541 ccttcttgag cggcacgaga tcgggggcct ggctcgcttc gagatgccgc tcgagcgagg
      601 cggccagcgc ctgcgccgcc tcgtagccgc tttgcatgac cgggccgagc ccgctcgcgt
      661 cggcgagcga ggtggcgacg ccttgcagga cgccgtcttc ggtcggcacg ctttcgccgg
      721 gcatcggatc ggccgggccg agggcgagct cgatgtcgcg caccgtcagc gcgccgcgct
      781 tgccggtgag gctcgccgcg cgcaggtcgc ccaggcctgc ggccgggtcc gcgagcgcgg
      841 ccagcgccat gacgcgcgcg gtgggatcgt tgttgtcgct cgcgtcgagg ggcgggttga
      901 cgtgctccca gtggcgctcg accagcccct ggaccaggcg caggccgtcg acggcgccgc
      961 tcaggccgcg caggcgcgcg ccgctccggg ccagccacac cgcgacgcgc aggtcgcgcg
     1021 ttcgcgccga gagcgcggcc gcatgctcgt tcaccagcgg ccagtcgggc ggctcggccg
     1081 ggtacacctt gtcgccgtac tgacgctcag gcttgcccgc gcctgcgtcg agcatggcct
     1141 gaaaggccgg gtcgtactcg aggtcggggc cgcaaggggc atcggccgag atcggcgtca
     1201 ggagagattc cagttcaggt tcagccatgc ggcatcggac tcgcggtcgt cgcgtcgtcg
     1261 cactctaggg atcggacggc gtcccggcag cggtcgaaag tcatgtcgcg gcgtgccggt
     1321 ggcgcggccg gtgcccagcg ggtgcgagcg ggaggcgcca tccggtcttc agcggaacag
     1381 gctgaccaga tgcgcgcgcg acctgacatc gagtgcgagc agcaacgacg acacgtagtt
     1441 cttgaccgtg ccgagcgaca gccgcatcga gttgctgatc tcctggttgt tgcagcctga
     1501 gaggacgagc tcgaggatct cgaggtggcg cggcccgagc tgggcgacgc ggtcgtacat
     1561 cgacgaggcc ggcatgcgcg ggaaaagcgc cttgttcgcg gcgaagccgg gccgggccgg
     1621 gccggccggc ggccagagca gcgccgagag ggtgccgagg atctcggacg cgaccgcacc
     1681 cttgggaacg tagccgacgg cgccgagcgc ctgggcctga cgaatcacga actcgtcctg
     1741 ggtagcactg aaaaccgcga cccgcgcctg cggaaactcc tggacgaact ggcgcagccc
     1801 ctgcaaaccc ttgcagtcgg agagattcag gtcgagcagg acggcgtcga tatcgctttc
     1861 gcgaccgtag atatcgagcg cttcgcgcag cgtgctcgcc tcgagccatt cgagcgggac
     1921 gccgagcagt tcggtgtaaa gcgccttggc gccgtagcgg acgagctcgt gatcgtcgac
     1981 gagaaggagc tttcgctgcc agccgggcgc ctcgtgcggc gttgacggca gcgccgccac
     2041 cgcatcgttg cgcgcagtcc ctgtcgcata catgacgatc tccccgtctt gtgcagattc
     2101 gatttgcgct cggccgaata acgcgccaag gcgtcgcacg gcggcgaaat cgaatcgcga
     2161 tattaggcgc gatggccccg
//
LOCUS       DASVHM010000856         3487 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_857664, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000856 DASVHM010000000
VERSION     DASVHM010000856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3487
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_857664"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VF308_15755"
     CDS             <1..216
                     /locus_tag="VF308_15755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEX7438160.1"
                     /translation="RAGAFRPKLRYAHQGGSNPPIIVVHGNSLEHVTDSYKRFLEGRF
                     RDHFKLTGTPLRIEMRSSKNPFADKRS"
     gene            297..539
                     /gene="hfq"
                     /locus_tag="VF308_15760"
     CDS             297..539
                     /gene="hfq"
                     /locus_tag="VF308_15760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HEX7438161.1"
                     /translation="MSNKGQLLQDPFLNLLRKEHVPVSIYLVNGIKLQGHIESFDQYV
                     VLLRNTVTQMVYKHAISTVVPGRAVNFQASEPNEQT"
     gene            580..1848
                     /gene="hflX"
                     /locus_tag="VF308_15765"
     CDS             580..1848
                     /gene="hflX"
                     /locus_tag="VF308_15765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEX7438162.1"
                     /translation="MSSSDPHAAAPESGPARAILVGVDFGAKAHFDASLDELALLAES
                     AGDIAVARVVARRKAPDAAFFVGSGKADELKELVALHRAEAVLFDQALSPAQQRNLER
                     HLGVAVADRTMLILEIFGARAQSHEGKLQVELARLQYLATRLVRRWSHLERQRGGIGT
                     RGGPGEAQIELDRRMIGERIKGVKKQLERVKRQRSTQRRSRERNDTFRISLVGYTNAG
                     KSTLFNALVDAKVHAADQLFATLDTTTRKLHLEGVERSVSLSDTVGFIRDLPHKLVEA
                     FEATLQEANDADLLLHVVDCANPRFDEQIVEVERVLAEIGAAEIAQVLVFNQVDRLEP
                     TQRPRLMRDQVELASGRRVTRVFVSAVTGEGFDALRGVLVEAVHGVPDDALKQADAAP
                     PVSAASEIDTQLPEGAPAEPLPTGTYHSRA"
     gene            1845..3197
                     /gene="hflK"
                     /locus_tag="VF308_15770"
     CDS             1845..3197
                     /gene="hflK"
                     /locus_tag="VF308_15770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0045861 - negative regulation of
                     proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HEX7438163.1"
                     /translation="MTISQPNPAPARRAERFREATAATWALARGTWAALRTRFVGRPA
                     LSGPASADLHLASGGRDGPPDLDELWRDFNRKLSGLFGGKGGGPRKNGSGDSGGGPNF
                     QPDMRSAGIGAGLIAGVIVLIWLGSGFFIVQAGQQAVVTSFGKYTHTVDAGFQWRLPY
                     PFQAHETVNVTQLRSKEVGRNAIIQATGLRDSSMLTQDENIVDIRFTVQYRLKDARAF
                     LFENRDPEEAVALAAESAVREIVGKSRIDSVLYEQRDAIAADLVKSIQAQLDRLKAGI
                     LIVNVNLQSVQPPEQVQAAFEDTLKAGQDGDRAKKEGLAYASDVIPKAQGSSARLREE
                     AEGYKSRVIAQAEGDAQRFDRVLAEYQKAPGVTRDRLYIDTMQQVYSNVSKVMVDSRS
                     NSNLLYLPLDKLLQQSGAAIAAPGAVPATVPTTEPTASGGSVDVRSRDGSRSRERETR
                     "
     gene            3214..>3487
                     /locus_tag="VF308_15775"
     CDS             3214..>3487
                     /locus_tag="VF308_15775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016447552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEX7438164.1"
                     /translation="MNRIGLIVGGVLLALMLVSSTLFIVDQRQVAVVYALGEIKEVIQ
                     EPGLKVKLPPPFQNVVFLDRRIQTLDSAENRAIFTAEKKSLVIDWLV"
BASE COUNT          603 a         1196 c         1129 g          559 t
ORIGIN      
        1 cgcgccggcg ccttccggcc gaagctgcgc tatgcgcacc agggcggctc caacccgccg
       61 atcatcgtgg tgcatggcaa ttcgctcgaa cacgtgaccg attcgtacaa gcgctttctc
      121 gaggggcgct tccgcgatca cttcaagctc accggcacgc cgctgcgcat cgagatgcgc
      181 tcatcgaaga atcccttcgc cgacaagcga tcctgagggg attgcgccga cagggctcga
      241 aacgcttttc gctgtgttaa ggtcttcggc ttctacccat catcacggag catatcgtga
      301 gcaacaaagg tcagcttctc caagacccgt tcctgaacct gctgcgaaaa gagcatgttc
      361 ccgtctcgat ctacctggtc aacggcatca agctgcaggg tcacatcgag tcgttcgacc
      421 agtacgtcgt cctgctgcgc aacacggtga cgcaaatggt ctacaagcac gccatctcca
      481 ccgtcgtgcc cggccgcgcg gtcaatttcc aggcctccga gccgaacgag cagacgtgag
      541 gttcgcgccc ttcgcgcgcc gctgccggcg agtcgctctt tgagttcgtc cgatccgcat
      601 gctgcggccc cggagtcggg gcccgcgcgg gcgatcctgg tcggggtcga tttcggcgcc
      661 aaggcgcact tcgacgcgtc gctcgacgaa ctcgcgctcc tggccgaatc ggccggcgac
      721 atcgccgtcg cgcgggtcgt tgcgcggcgc aaggcgccgg acgcggcctt cttcgtcggc
      781 tcgggaaaag ccgacgaatt gaaggaactt gtcgcgctgc acagggccga ggccgtgctc
      841 ttcgaccagg cgctctcgcc ggcgcagcag cgcaacctcg agcgccatct cggcgtcgcg
      901 gtcgcggatc gcacgatgct gatcctcgag atcttcgggg cccgggcgca gagccacgag
      961 ggcaagcttc aggtcgaact ggcgcgcctg cagtacttgg cgacgcgtct ggtgcggcgc
     1021 tggagccacc tcgagcgcca gcgcggcggc atcggcacgc gcggtggtcc gggcgaagcc
     1081 cagatcgaac tcgatcgccg catgatcggc gagcgcatca agggcgtgaa gaagcagctc
     1141 gagcgcgtca agcgccagcg cagcacgcaa cgccgctcgc gcgagcgcaa cgacaccttc
     1201 cgcatctcgc tcgtcggcta caccaacgcg ggcaagtcga cgctcttcaa tgccctggtc
     1261 gacgcgaagg tccatgcggc tgaccagctc ttcgcgacgc tcgacacgac cacgcgcaag
     1321 ctccatctcg aaggcgtcga gcgttcggtg tcgctgtccg atacggtggg cttcatccgc
     1381 gatctgccgc acaagctggt cgaggcgttc gaggcgaccc tgcaggaagc caacgacgcc
     1441 gatctgctgc tgcacgtggt cgactgcgcg aatccgcggt tcgacgagca gatcgtggaa
     1501 gtcgagcgtg tgctcgccga gatcggggcc gcggagatcg cccaggtgct cgtcttcaac
     1561 caggtcgacc gcctcgagcc gacccagcgc ccgcgcctca tgcgcgacca ggtcgagctc
     1621 gcctccggcc ggcgcgtaac gcgggtgttc gtcagcgccg tcaccggcga aggattcgac
     1681 gcgctcagag gtgtcctggt cgaagcggtc cacggcgtcc cggacgatgc cttgaagcaa
     1741 gccgatgcgg ccccacctgt ttccgcggct tcggaaatcg acacgcagtt gccggaaggc
     1801 gcgcccgccg agccactgcc cacgggcacc tatcattcac gcgcatgacg atcagccaac
     1861 cgaaccccgc ccctgcccgc cgcgccgagc gctttcgcga ggccaccgcg gcgacctggg
     1921 cgctggcacg cggtacatgg gccgcgttgc gtacgcgctt cgtcggccgg cccgcactta
     1981 gcgggcccgc atcggccgac ctgcacctgg cgagcggggg ccgcgacgga ccgcccgatc
     2041 tcgatgagct ctggcgcgac ttcaaccgca agctgagcgg ccttttcggc ggcaagggcg
     2101 gcggcccgcg caagaacggt tccggcgatt ccggcggcgg cccgaacttc cagcccgaca
     2161 tgcgcagcgc cggcatcggc gcggggctga tcgcgggcgt catcgtgctg atctggctcg
     2221 gcagcggttt cttcatcgtg caggcaggcc agcaggccgt cgtcacgtcg ttcggcaagt
     2281 acacccacac ggtcgatgcc ggcttccagt ggcgcctgcc ctatccgttt caagcccacg
     2341 agaccgtcaa cgtgacgcag ttgcgctcga aagaggtcgg ccgcaacgcg atcatccagg
     2401 cgaccgggct gcgcgactcc tcgatgctga cccaggacga gaacatcgtc gacatccgct
     2461 tcaccgtgca ataccgcctg aaggatgcac gcgccttcct gttcgagaac cgcgacccgg
     2521 aagaagcggt cgcgctcgcg gccgaatccg cggtgcgcga gatcgtcggc aagagccgga
     2581 tcgattcggt gctgtacgag cagcgcgatg cgatcgccgc cgacctcgtc aagtcgatcc
     2641 aggcccaact cgaccggctc aaggccggca tcctgatcgt caacgtcaac ctgcagagcg
     2701 tgcagccgcc cgagcaggtc caggcggcgt tcgaagacac gctcaaggcg gggcaggatg
     2761 gcgaccgcgc caagaaggaa ggtctcgcct acgcgagcga tgtgattccg aaggcgcaag
     2821 gctcgtcggc gcggttgcgc gaggaagccg aaggctacaa gtcgcgcgtg atcgcccagg
     2881 ccgagggcga tgcgcagcgc ttcgatcgcg tgcttgccga ataccagaag gcgccgggcg
     2941 tgacgcgtga ccggctctac atcgacacga tgcagcaggt ctactcgaac gtctcgaagg
     3001 tgatggtgga cagccgcagc aactcgaacc tcctttacct gccactcgac aagctgctgc
     3061 aacaaagcgg cgcggcgatc gcggcgcccg gagccgtgcc cgcgaccgtg ccgacgacgg
     3121 agcctacggc ttcgggcggc agcgtcgacg tgcgctcgcg cgatggttcg cgcagccgcg
     3181 agcgcgagac gcgctgagct tcggagcagt cccatgaatc gcatcggttt gatcgtcggc
     3241 ggggtcctgc tcgccctgat gctggtctcg tcgacattgt tcatcgtcga ccagcgccag
     3301 gttgccgtgg tctatgccct cggtgagatc aaggaggtca tccaggagcc gggtctcaag
     3361 gttaagttgc cgccgccgtt ccagaacgtg gtctttctcg atcgccgcat ccagaccctc
     3421 gacagcgccg agaaccgggc gatcttcacc gccgagaaga agagcctcgt catcgactgg
     3481 ctcgtca
//
LOCUS       DASVHM010000857         2502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_425149, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000857 DASVHM010000000
VERSION     DASVHM010000857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425149"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..835)
                     /locus_tag="VF308_15780"
     CDS             complement(<1..835)
                     /locus_tag="VF308_15780"
                     /inference="COORDINATES: protein motif:HMM:NF013460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HEX7438165.1"
                     /translation="MESAPAPTLVADPAAPSEARPAEPALRFYRHRLPVRLMHWINVV
                     CLFVLLMSGLNIFNAHPALYWGRDSTFAKPWVWMHAENTPNGPVGKTRIAGSEFTTTG
                     VLGLSKVDGTPTARAFPSWATIPGPQWLAMGRHWHFFFAWIFVVNGIFYVLYTLFSRH
                     LVRDLMPTRQELKNIGKSIRDHILFKHPTGAAAKRYSVLQSLAYLVVIFGLLPLVVIA
                     GMAMSPRIDTVFTGWVELLGGRQSARSLHFLAAMGLLLFVAIHVFEVIVAGVWNEIRS
                     MV"
     gene            complement(945..>2502)
                     /locus_tag="VF308_15785"
     CDS             complement(945..>2502)
                     /locus_tag="VF308_15785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013518321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M14 family metallocarboxypeptidase"
                     /protein_id="HEX7438166.1"
                     /translation="VVPGSAPYGPAVAARFPDPPVVYRTPAFAPGHAGFTSNAELHAV
                     LAGLVRSSGQRLGGTEVKLLALGTSQGGTPLEALRFSRAESGGAAPAPARPTVLLVGQ
                     QHGDEPAGSEALLVIAQELAQGRLEALLDRIDVVVLPRANPDGAEANRRSTASGIDAN
                     RDHLLLKTPEAQAQATLMREYAPVVVVDAHEYSVVGRFLEKFGAVQRFDALLQYAMTA
                     NLPEFISKASEEWFRQPAVARLKAEGLTSEWYYTTTTDVSDKKISMGGTQPDTGRNVN
                     GLTNAVSILVETRGVGLGRLHLTRRVHTHVTAIASILQSAATRAADLVKLRQYVDHEV
                     SALACQGEVVVEAGPTPSEYRLLMLDPATGADLAVTVAWDSALELRPLRTRARPCGYW
                     LAEQEADAVQHLRALGVQVLRLDEGGEVRGETYRELAREVGPRQDVRGPLVDAGGVLR
                     VKVQTVPALIDLPPGGYYVPLDQPLANLIVAALEPDTQNSFFANRIVTSAIGEARLLA
                     RPDLKGTPVP"
BASE COUNT          387 a          836 c          907 g          372 t
ORIGIN      
        1 tcaccatcga gcggatctcg ttccagacgc cagcgacgat gacttcgaag acgtggatcg
       61 cgacgaacag cagcagcccc atggcggcga ggaaatgcag cgagcgcgcc gattgccggc
      121 cgcccagcag ctcgacccag ccggtgaaga ccgtgtcgat gcgcggcgac atcgccattc
      181 cggcgatcac gaccaggggc agcaggccga agatgacgac gaggtaggcg aggctctgca
      241 gcacgctgta gcgcttcgcc gcggcgccgg tcggatgctt gaagaggatg tggtcgcgga
      301 tcgacttgcc gatgttcttc agctcttgcc gggtcggcat caggtcgcgc accaggtggc
      361 ggctgaacag cgtgtagagc acgtagaaga tgccgttgac gacgaagatc caggcgaaga
      421 agaaatgcca gtggcggccc atcgccagcc actgcggacc cgggatcgtg gcccagctcg
      481 gaaaggcgcg cgcggtcggc gtgccgtcga ccttggagag tccgagcacg ccggtcgtcg
      541 tgaattcgct gccggcgatg cgggtcttgc cgaccgggcc gttcggcgtg ttctccgcgt
      601 gcatccagac ccagggcttc gcgaaggtcg agtccctgcc ccaatagaga gccgggtggg
      661 cgttgaagat gttgagcccg ctcattagca ggacgaagag gcagaccacg ttgatccagt
      721 gcatgagtcg caccgggagg cgatgccgat agaagcgcag cgcgggctcc gcgggccggg
      781 cttcggacgg cgccgccggg tcggcgacga gcgtcggtgc tggggctgat tccatgcgtg
      841 tgcctcccga attgcgcgca tcgtatgaca agagccggtc cggcccaaca cctcttggtc
      901 gagccaggac ggcgcctctt acagacccgc cgcagcgccg ctgctcaggg caccggcgtg
      961 cccttcaggt cggggcgtgc cagcagccgc gcttcgccga tggccgaggt gacgatgcga
     1021 ttggcgaaga aactgttctg cgtgtccggc tcgagcgccg cgacgatcag gttggcgagc
     1081 ggctggtcga gcggcacgta gtagccgccc gggggcaggt cgatcagggc cggcacggtc
     1141 tgcaccttca cgcgcagcac gccgccggcg tcgaccaggg ggccgcgcac gtcctggcgc
     1201 gggccaactt cgcgcgccag ctcgcgatac gtctcgccgc gcacctcgcc gccctcgtcc
     1261 aggcgcagca cctgcacgcc gagcgcgcgc agatgctgga ccgcatcggc ctcctgctcg
     1321 gcgagccagt agccgcaggg gcgcgcccgc gtccgcaagg ggcgcagttc gagggccgag
     1381 tcccaggcca cggtgacggc caagtcggca ccggtcgccg gatcgagcat cagcagccgg
     1441 tattcgctcg gcgtcggtcc ggcctcgacg acgacctcgc cctggcaggc gagcgcgctc
     1501 acctcgtggt cgacgtactg gcgcaacttg acgagatccg cggcgcgggt cgcggcgctt
     1561 tgcaggatgc tcgcgatcgc cgtgacgtgg gtgtggacgc ggcgcgtcag gtgcaggcgg
     1621 ccaaggccga cgccgcgcgt ctcgaccagg atgctgacgg cgttggtcag cccgttgacg
     1681 ttgcggccgg tgtcgggctg cgtcccgccc atcgagatct tcttgtcgct gacgtcggtc
     1741 gtggtcgtgt agtaccactc ggaggtcagg ccctcggcct tcagacgcgc gaccgccggc
     1801 tggcgaaacc attcttccga ggccttgctg atgaattccg gcaggttcgc cgtcatcgcg
     1861 tattggagca gcgcgtcgaa gcgctgcacc gcgccgaatt tttcgaggaa gcggccgacc
     1921 accgaatact cgtgtgcatc gacgacgacg accggcgcgt actcgcgcat cagagtggcc
     1981 tgggcctgcg cctccggcgt tttcaggagg agatggtcgc gattcgcatc gatgccgctc
     2041 gcggtgctgc gccgattcgc ctcggcgccg tccggattgg cgcgcggcag gacgacgaca
     2101 tcgatgcgat cgagcagcgc ctcgaggcgc ccctgggcga gctcctgcgc aatgacgagc
     2161 aaggcctcgc tgccggccgg ctcgtcgcca tgctgctgcc ccaccagcaa caccgtgggc
     2221 cgcgccggcg cgggtgccgc gccgccggac tcggcgcgcg agaagcgcag cgcttcgagc
     2281 ggtgtgccgc cctgcgaggt gccgagggcg agcagcttca cctcggtccc gccgaggcgc
     2341 tggccgctcg agcggaccag cccggcgagc acggcatgga gctcggcgtt gctcgtgaag
     2401 cccgcatggc cgggcgcgaa cgcgggtgtg cggtagacga ccggcgggtc gggaaatcgt
     2461 gccgcgacgg ccggaccgta gggcgcggac cccggcacca cg
//
LOCUS       DASVHM010000858         4451 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1365356, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000858 DASVHM010000000
VERSION     DASVHM010000858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4451
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1365356"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..859
                     /locus_tag="VF308_15790"
     CDS             <1..859
                     /locus_tag="VF308_15790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007884466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438167.1"
                     /translation="HSARDTFQMLHERGVAMQAKPFSIGFRIEHPQSLIDKARFGAHA
                     GHPLLGAADYRLVHHARNGRSVYTFCMCPGGTVVAATSEPDRVVTNGMSQYSRNERNA
                     NAGIVVGITPQDYRIPDSAAGAAPSPLDGIAFQRHWESRAYELGGGAYHAPGQLVGDF
                     IRGQKSDTLGAVLPSYQPGVRLGDLGAPGRAAAPDYAIEAIREALVAFDRQIKGFAMA
                     DAVLTGVETRTSSPLRITRGKDRQSLNVEGLYPAGEGAGYAGGIMSAAVDGIETAEAV
                     ALALIAPPA"
     gene            complement(888..2363)
                     /locus_tag="VF308_15795"
     CDS             complement(888..2363)
                     /locus_tag="VF308_15795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009553343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HEX7438168.1"
                     /translation="MNARDPNLPVQPDEATALADFASRTWDEEIVPALTEYIAIPAKS
                     PMFDADWQQHGYIERVIRDAASWVEGRGVAGLKLEVVRLEGRTPVIFFEVPATKAGST
                     DTICLYGHLDKQPEFTGWRSDLGPWTPKYQNGLLYGRGGADDGYAVYAALTAIMALDR
                     QGIARPRCVGIIESCEESGSFDLPAYIEALKGRLGNVSLVVCLDSGAGNYDQLWLTTS
                     LRGVVSGTLKVEILSEGVHSGDASGLVPSSFRILRQVLDRLEDSKTGRLLPESFHCEI
                     PTDRIEQARATAKILGDEVWKRFPWACGADGAATLPTTTDPLQALLNRTWKPTLSVTG
                     VDGFPAMKDAGNVLRPYTTFKLSLRLPPLVEGHEAATALKTLLEDNAPYNAKVTFHAD
                     GRVGALGATGWNGPSLAPWLENALNAASQAHYDAPCGYVGQGGTIPLMSMLQKSFPAA
                     QMMVCGVLGPKSNAHGPNEFLHVPYGKKLTAAVAQVMAACA"
     gene            complement(2420..3265)
                     /locus_tag="VF308_15800"
     CDS             complement(2420..3265)
                     /locus_tag="VF308_15800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7438169.1"
                     /translation="MDATLKTGDGLTLRLRDWPCAGARGTVLIVHGLGEHIDRHRHVA
                     AHLNAWGWNVVGYDQRGHGASEGSRGKLASGDDLLFDLARVIDAARAAHPGPLVLLGH
                     SLGGLVAARFVAEGVGPRPQPAPWQRQVDALVLSSPALDTGMRAGQKLLLGLMGPLAP
                     NLAVGNGLKPAWISRDAAVVAAYSADPLVHDRVAPRLARFVVDGGAFVLARAAQWTLP
                     TLLLYAGSDRCVAPAGSAAFAAAAPEQVVTAREFKVLFHEIFNEPEQAEVFLVLRDWL
                     AARKP"
     gene            3368..4195
                     /locus_tag="VF308_15805"
     CDS             3368..4195
                     /locus_tag="VF308_15805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX7438170.1"
                     /translation="MNDFFSLATQDGIAHLQLNRPERMNTMAPPFFLALRDAVRGLGA
                     DGATRVLVISSTGRHFCAGMSLDVFASGDALLATATARARLAFLESLTKLMDCFTALD
                     EARFPVICAIQGGCVGGALDLATACDIRVCSADAFFTVQEITVGMAADLGVLQRLPKI
                     VPQAVAREMAFTGERIGAERALAVGLVNAVLPDAAAALDHAMKLAKSISAKSPLAIAG
                     SKLALNHARDHSTASALQQMALLQSAIFDTGEMAQAIAAWKAKTEAQFEPLAAANPL"
     gene            complement(4200..>4451)
                     /locus_tag="VF308_15810"
     CDS             complement(4200..>4451)
                     /locus_tag="VF308_15810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011482966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX7438171.1"
                     /translation="GRATLGEQLRAQLAQANAEEVRFRLSDLRYRNGASSYLEVLDAQ
                     RSLFIAQQAVVQAQAAQVQNLVTLYRVLGGGWTEAAQAE"
BASE COUNT          665 a         1585 c         1544 g          657 t
ORIGIN      
        1 ccacagcgcc cgcgacacct tccagatgct gcacgagcgc ggcgtcgcga tgcaggccaa
       61 gccgttctcg atcggctttc ggatcgagca tccgcagtcg ctcatcgaca aggcgcgctt
      121 cggcgcgcac gccggtcatc cgctgctcgg cgcggccgac taccggctcg tgcaccacgc
      181 tcgcaacggg cgctcggtct acaccttctg catgtgcccg ggcggaacgg tcgtcgcggc
      241 gacctccgag cccgatcgcg tggtcaccaa cggcatgagc cagtattcgc gcaacgagcg
      301 caacgcgaat gccggcatcg tcgtcggcat cacgccgcag gactaccgga tccccgattc
      361 ggccgcgggc gcggcgccga gcccgctcga cggcatcgcc tttcagcgcc actgggagtc
      421 gcgcgcgtac gagctcggtg gcggcgccta ccacgcaccc ggccagctgg tcggcgactt
      481 catccgcggg cagaaatcgg acacgctcgg cgccgtgctg ccgtcgtacc agcccggcgt
      541 gcgcctcggc gatctgggcg ccccgggccg cgccgccgct ccggactacg cgatcgaggc
      601 gatccgcgaa gcgctggtgg cattcgatcg gcagatcaag ggcttcgcca tggcggacgc
      661 cgtgctgacc ggcgtcgaaa cgcggacctc gtcaccgctg cgcatcacgc gcggcaagga
      721 ccggcagagc ctcaacgtcg agggcctcta cccggccggc gaaggtgccg gctacgccgg
      781 cggcatcatg tcggccgcgg tggacggcat cgagaccgcc gaggcggtcg cccttgcgct
      841 gatcgcgccg ccggcataag gcccgcaccc gcgtacgctg cgcggtttca cgcgcaggcc
      901 gccatcacct gcgcgactgc cgccgtcagc ttcttgccgt acggcacgtg caggaactcg
      961 ttcggcccgt gcgcattgct cttcgggccg aggacaccgc agaccatcat ctgcgcagcc
     1021 ggaaagctct tctgcagcat gctcatcagc ggaatcgtcc cgccctggcc gacatagccg
     1081 cagggcgcat cgtagtgggc ctgcgaggcc gcgttgaggg cgttttcgag ccagggcgcg
     1141 aggctcggac cgttccagcc cgtcgcgccc agcgcaccga cacggccatc ggcatgaaag
     1201 gtgaccttgg cgttgtacgg tgcgttgtcc tcgagcagcg tcttcagcgc ggtcgccgcc
     1261 tcgtggcctt cgaccagcgg cggcaggcgc aggctcagct tgaacgtggt gtagggccgc
     1321 agcacgttgc cggcatcctt cattgccggg aaaccgtcga caccggtgac gctcagggtc
     1381 ggcttccagg tgcggttgag cagcgcctgg agcgggtcgg tggtggtcgg cagggtggcc
     1441 gcgccgtcgg cgccgcaggc ccaggggaag cgcttccaga cctcgtcgcc gaggatcttc
     1501 gcggtcgccc gtgcctgctc gatgcggtcg gtcggaatct cgcagtgaaa gctctcgggc
     1561 aggagccggc cggtcttcga gtcttcgagg cggtcgagca cctggcgcag gatgcgaaag
     1621 ctcgagggca cgaggccgct ggcgtcgccc gagtgcacgc cttcgctgag gatctcgacc
     1681 ttcagcgtgc cgctgaccac gccgcgcagg ctggtcgtga gccagagctg atcgtagttg
     1741 ccggcgccgc tgtcgagaca gacgacgagg ctgacgttgc cgagtcgccc cttcagcgcc
     1801 tcgatgtagg ccggcaggtc gaacgagccg ctctcttcgc agctctcgat gatgccgacg
     1861 cagcgcggcc gggcaatgcc ctggcggtcg agcgccatga tcgcggtcag cgccgcatag
     1921 accgcatagc cgtcgtcggc gccgccgcgg ccatagagca ggccgttctg atatttcggc
     1981 gtccacgggc cgagatcgga acgccagccc gtgaattcgg gctgcttgtc gaggtggcca
     2041 tagaggcaga tcgtgtcggt gctgccggcc ttggtcgccg gcacctcgaa gaagatgacc
     2101 ggcgtgcggc cttcgagacg cacgacctcg agcttcaggc cggcgacgcc ccgcccttcg
     2161 acccagctcg ccgcatcgcg gatcacgcgc tcgatgtagc cgtgctgctg ccagtcggca
     2221 tcgaacatcg ggcttttcgc cgggatcgcg atgtactcgg tgagggccgg aacgatctct
     2281 tcgtcccagg tgcggctggc gaagtcggcg agcgcggtcg cttcgtcggg ctggacggga
     2341 aggttcgggt cgcgggcgtt catggggtct cctcggcgtg caggctttcg agtgtagaac
     2401 ctcgccgccc cggtgtcggt cagggcttgc gcgcggcgag ccagtcgcgc agcaccagga
     2461 acacctcggc ctgctccggc tcgttgaaga tctcgtggaa gagcaccttg aactcgcgcg
     2521 ccgtgacgac ctgctcgggc gcggccgccg cgaacgcggc cgacccggcc ggcgcgacgc
     2581 agcggtcgct gccggcgtag agcagcagcg tgggcagcgt ccactgcgca gcccgcgcga
     2641 gcacgaacgc gccgccatcg acgacgaagc gcgccaggcg cggcgcgacg cggtcgtgca
     2701 ccagcgggtc ggcgctgtac gccgcgacga ccgcggcgtc gcgtgaaatc caggccggct
     2761 tcaggccgtt gccgacggcg aggttcggcg cgagcggtcc catcaggccg agcaggagct
     2821 tctgcccggc gcgcatgccg gtgtcgaggg ccggcgacga cagcaccagc gcatcgacct
     2881 ggcgctgcca cggcgcaggc tgcggccgcg ggcccacacc ttcggccacg aagcgggcgg
     2941 ccacgagccc gcccaggctg tgcccgagca gcacgagcgg cccggggtgc gcggcgcgcg
     3001 ccgcgtcgat cacgcgcgcc agatcgaaca acaggtcgtc gcccgaggcg agctttccgc
     3061 gcgacccttc gctcgcgcca tgcccgcgct ggtcgtagcc gaccacgttc cagccccagg
     3121 cgttgagatg cgccgcgacg tgccggtggc ggtcgatgtg ctcgcccaaa ccgtggacga
     3181 tcaggaccgt gccgcgcgcc cccgcgcagg gccagtcgcg aagccgcagc gtcaggccat
     3241 cgccggtctt cagggttgca tccatgcgcg cgagtgtatg cagagcccgg cccgccgcca
     3301 cgcgccaggt gaggcacagt cacgtctcga aacccacccg aacctcgcca caccgaccgg
     3361 agccgccatg aacgatttct tcagcctcgc cacgcaggat ggcatcgccc acctgcagtt
     3421 gaaccgcccc gagcgcatga acacgatggc gccgccgttc ttcctggcgc tgcgcgacgc
     3481 ggtgcgcggc ctgggcgcgg acggcgccac ccgcgtcctg gtgatctcct cgaccggcag
     3541 gcacttctgc gccggcatgt cgctcgacgt gttcgcgagc ggcgacgcgc tgctcgcgac
     3601 cgcgacggca cgtgcacggc tcgccttcct ggagtcgctg acgaagctga tggactgctt
     3661 cacggcgctc gacgaggcgc gctttccggt gatctgcgcg atccagggcg gctgcgtcgg
     3721 cggcgcgctc gatctcgcga ccgcctgcga catccgcgtc tgcagcgccg acgccttctt
     3781 cacggtgcag gagatcacgg tcggcatggc ggccgatctc ggcgtgctgc agcgcctgcc
     3841 gaaaatcgtg ccgcaggcgg tggcacgcga gatggccttc accggcgagc gcatcggcgc
     3901 cgaacgcgcc ctcgcggtcg gcctcgtcaa tgccgtgttg cccgacgcgg ccgcggcgct
     3961 cgaccacgcg atgaagctgg ccaaaagcat cagcgcgaag tcgccgctcg ccatcgccgg
     4021 cagcaagctc gcgctgaacc acgcccgcga tcactcgacc gcatcggcgc tgcaacagat
     4081 ggcgctgctg caaagcgcga tcttcgacac cggcgaaatg gcgcaggcca tcgcagcgtg
     4141 gaaggcgaag acagaggcgc aattcgaacc gctcgcagcg gcaaacccgc tctgaagact
     4201 cattcggcct gtgccgcttc cgtccagccc ccgcccagca cccgatagag cgtgaccagg
     4261 ttctgcacct gggcggcttg ggcctgcacg accgcctgct gggcaatgaa gagcgagcgc
     4321 tgcgcatcga gcacttcgag gtagctcgag gcgccgttgc gatagcgcag gtcggagagg
     4381 cgaaagcgga cttcctcggc attggcctgg gcgagttggg cgcgcaattg ctcgccgagc
     4441 gtcgcgcgcc c
//
LOCUS       DASVHM010000859         2934 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1004478, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000859 DASVHM010000000
VERSION     DASVHM010000859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1004478"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..979)
                     /locus_tag="VF308_15815"
     CDS             complement(<1..979)
                     /locus_tag="VF308_15815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX7438172.1"
                     /translation="MAGAKIPRVRLPADVRLDTLAVREGLPPSAWGENSEALFLTSSF
                     VQPDAATAAARFANEEEAFIYSRFTNPTVMMFERRLAALEGAGACIATSSGMSAILLL
                     GMGLLKAGDHVICSQSVFGSTIMLFGREFAKFGVETSFVSQTDVAQWRAAVKPNTKLL
                     FAESPTNPLTEVCDIRALADVARAAGAWLAVDNCFCTPALQRPIEYGADFVIHSGTKY
                     LDGQGRVIAGAICATEQIVNERFVPVMRSAGMALSPFNAWVVLKGLETLSIRMRAQSE
                     RAHALASWLEAQPQVERVYYPGLASHPQHSLAMAQQSGCGGAVVSFIVRA"
     gene            complement(979..2502)
                     /gene="purF"
                     /locus_tag="VF308_15820"
     CDS             complement(979..2502)
                     /gene="purF"
                     /locus_tag="VF308_15820"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEX7438173.1"
                     /translation="MCGIVGVISHAPVNQLIYDALLLLQHRGQDAAGIVTMQGTKCFM
                     HKARGMVRDVFRTRNMRALPGNVGLGQVRYPTAGNAYSEEEAQPFYVNAPFGIVLVHN
                     GNLTNAAALKQELIDVDRRHINTQSDSEVLINILAHELEVAVRDRALSPAAVFDAVRV
                     VHRRIRGSYAVVALIAGHGLLAFRDPFGIRPLCFGESGSSAEGAMMVASESVAIEGTG
                     HKVTRDVAPGEAIFIDLQGRIHAQQCAENPSLNPCMFEFVYLARPDSIMDGVSVYQAR
                     LNLGETLAQRVISTIPPNEIDVVIPIPESSRPSAMQLAQRIGKPYREGFVKNRYVGRT
                     FIMPGQGVRKKSVRQKLNAIGVEFRGRNVLLVDDSIVRGTTSKEIVQMAREAGARKVY
                     MASAAPPVRFPNVYGIDMPTKDELIAHNRSIEEIREFIGADALIYQDVAAMKRVVAAL
                     NPALHGFEASCFDGVYITGDVSAADVDAMAAQRPAQGEDEEADSRSRLALQSASEVL"
     gene            complement(2537..>2934)
                     /locus_tag="VF308_15825"
     CDS             complement(2537..>2934)
                     /locus_tag="VF308_15825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEX7438174.1"
                     /translation="AGWFVAYFAAQWAAPFIAPHSPIGTPGSLLNQASAFASVFLVTL
                     IVWSLLSRLVRSLIHATPLSPLDRMLGAAFGLLRGGLVLLVLAAVIAFTPVAKSVAWQ
                     QSVGAAGLNAILRGLAILLPPGVAHFLPA"
BASE COUNT          493 a          995 c         1003 g          443 t
ORIGIN      
        1 cggcgcgcac gatgaacgag accaccgcac cgccgcagcc ggactgctgc gccatcgcca
       61 gcgagtgctg cgggtgcgac gcgagacccg gatagtagac gcgctcgacc tgcggctgcg
      121 cctcgagcca ggaggccagc gcgtgagccc gttcgctctg cgctcgcatg cggatcgaca
      181 gcgtctcgag gcccttcagc acgacccagg cgttgaacgg cgagagcgcc atgccggcgc
      241 tgcgcatcac cggcacgaag cgctcgttga cgatctgctc ggtggcgcag atcgccccgg
      301 cgatcacccg accctggcca tcgaggtact tggtgccgga atggatgacg aagtcggcgc
      361 cgtactcgat cggccgctgc agggccggcg tgcaaaagca gttgtcgacc gcgagccagg
      421 ccccggctgc ccgagccacg tcggcgagcg cgcggatgtc gcagacctcg gtcagcgggt
      481 tcgtcggcga ttcggcgaag agcagcttcg tgttcggctt gaccgcggcg cgccattgcg
      541 ccacgtcggt ctgcgacacg aacgacgtct cgacgccgaa cttcgcgaac tcgcggccga
      601 acagcatgat cgtcgagcca aacacgctct gcgaacagat cacgtggtcg ccggccttca
      661 ggaggcccat gccgagcagc aggatcgcgc tcatgccgct cgaggtggcg atgcaggccc
      721 cggcgccctc gagcgcggcc aggcggcgct caaacatcat cacggtcggg ttcgtgaagc
      781 gcgaatagat gaaggcttct tcctcgttcg cgaagcgcgc ggccgcggtc gcggcatcgg
      841 gctgcacgaa gctgctcgtg aggaagaggg cctccgagtt ctcgccccag gcgctcggtg
      901 gcaggccttc gcgcaccgcg agcgtgtcga gccgcacgtc ggcaggcagg cgcacgcgcg
      961 ggatcttcgc gccggccatc aaaggacctc cgaggcgctc tgcagcgcga gtcgcgaacg
     1021 gctgtcggcc tcttcgtctt caccttgcgc ggggcgctgc gcggccatcg cgtcgacgtc
     1081 ggccgcgctg acgtcgccgg tgatgtagac gccgtcgaag cacgatgcct cgaagccgtg
     1141 caacgccgga ttgagcgccg cgacgacgcg cttcatcgcc gcgacatcct ggtagatcag
     1201 cgcatcggcg ccgatgaact cgcggatctc ctcgatgctg cggttgtgcg cgatcagctc
     1261 gtccttggtc ggcatgtcga tgccgtacac gttcgggaag cgcaccggcg gcgcggccga
     1321 agccatgtag accttgcgcg cgccggcttc gcgcgccatc tgcacgatct ccttcgaggt
     1381 cgtgccgcgc acgatcgaat cgtcgacgag cagaacgttg cggccgcgga actcgacgcc
     1441 gatcgcattc agcttctgcc gcaccgactt cttgcgcacg ccctgccccg gcatgatgaa
     1501 ggtccggccc acgtagcggt tcttcacgaa gccttcgcgg tagggcttgc cgatgcgctg
     1561 ggcgagctgc atcgccgaag ggcggctcga ctcggggatc gggatgacca catcgatctc
     1621 gttcggcgga atggtcgaga tcacgcgctg cgcgagcgtc tcgccgaggt tcaggcgcgc
     1681 ctggtagacc gacacgccgt ccatgatcga atcgggccgc gccaggtaga cgaactcgaa
     1741 catgcatgga ttcaggctcg ggttttcggc gcactgctgc gcgtggatgc ggccctgcag
     1801 gtcgatgaag atggcctcgc ccggcgccac gtcgcgcgtc accttgtggc cggtgccctc
     1861 tatcgcgacc gactcgctcg cgaccatcat cgcgccctcc gcgctcgaac cgctctcgcc
     1921 gaagcagagc ggccggatgc cgaacgggtc gcggaaggca agcaggccgt ggccggcgat
     1981 cagcgcgacg acggcgtagg agcccctgat ccggcgatga accacgcgca ccgcgtcgaa
     2041 caccgccgcc ggcgacaggg cgcggtcgcg caccgcgacc tcgagctcgt gcgccaggat
     2101 gttgatcagc acctcgctgt cgctctgggt gttgatgtga cggcggtcga cgtcgatgag
     2161 ttcctgcttc agcgccgcgg cgttggtcag gttgccgttg tgcacgagga cgatgccgaa
     2221 cggcgcgttg acgtagaacg gctgcgcctc ttcttcgctg taggcgttgc ccgcggtcgg
     2281 ataacgcacc tggccgaggc cgacgttgcc cggcagcgcg cgcatgttgc gggtgcggaa
     2341 cacatcacgc accatgccgc gcgccttgtg catgaagcac ttcgtgccct gcatggtgac
     2401 gatgccggcg gcatcctggc cgcgatgctg caacagcagc agcgcgtcgt agatcaactg
     2461 gttgaccggt gcatgggaga tgacgccgac gatgccgcac atgagttcta gccccgattc
     2521 aagccgcccg cgcgcttcac gcgggcagaa aatgcgccac gccgggcgga agcaggattg
     2581 caagcccgcg caggatggcg ttcagccccg ccgcgccgac cgattgctgc cacgccaccg
     2641 acttcgccac cggcgtaaag gcgatgaccg ccgccagcac gagcagcacg agaccgccgc
     2701 gcagcaatcc gaacgccgcg ccgagcatcc ggtcgagcgg actgagcggc gtcgcgtgaa
     2761 tcaggcttcg aaccaggcgc gacaagaggc tccagacgat cagcgtgacg aggaagacag
     2821 atgcgaacgc ggacgcctgg ttcaagagcg aacccggcgt gccgatcggg gaatgcggcg
     2881 cgatgaacgg cgcggcccac tgggccgcga agtatgcgac gaaccagccg gcga
//
LOCUS       DASVHM010000860         2572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_642698, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000860 DASVHM010000000
VERSION     DASVHM010000860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_642698"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..1007
                     /gene="asd"
                     /locus_tag="VF308_15830"
     CDS             138..1007
                     /gene="asd"
                     /locus_tag="VF308_15830"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005794428.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaetidylserine decarboxylase"
                     /protein_id="HEX7438175.1"
                     /translation="MPERAAVRLQYALPKRALTALAGRIASARRGRATTRLIRWFIRR
                     YDVAMSEAANPDPASYASFNDFFTRALKPGARPLAHADLVCPIDGAISQFGAIERDQI
                     FQAKGHHYSTAALVGGDLPLAARFEDGLFATLYLSPRDYHRIHMPCDGMLTRMIHVPG
                     DLFSVNPVTARGVPGLFARNERLVCAFESARGPFVLVLVGATIVGSMATVWHGVVNSP
                     RVRELREWSYADGQVALKQGEEMGRFQLGSTVVLLFPKSFHRFPAQWIAGGAVRLGEA
                     MSQAIERATAPDS"
     gene            1020..2069
                     /gene="dusA"
                     /locus_tag="VF308_15835"
     CDS             1020..2069
                     /gene="dusA"
                     /locus_tag="VF308_15835"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002943 - tRNA dihydrouridine synthesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HEX7438176.1"
                     /translation="MFESTADLRLPGPTVSWGRPWRLCVAPMLDWTDRHCRFFHRLLT
                     RHTRLYTEMVTTGALLHADVARHLDFNAAEHPVALQLGGSEPADLAHCASLAERWGYD
                     EVNLNCGCPSERVQRGAFGACLMAEPQLVADCVEAMRTAVSVPVTGKHRIGIDRHESY
                     DFVRDFVGTVAEGGCAVFIVHARNAWLKGISPKENRELPPLRHEMVARLKSDFPTLTI
                     VLNGGVTTPEAIAAHLGVVDGVMVGREAYHHPWALTQWDERFFGAAPRLLDRDEIESE
                     MVDYMERVAAAGEPWTHVSRHILGLRNGEAAARKWRQVWSDHRLKFESPRSVSRLARA
                     ALAGKDGSHAASVAA"
     gene            2139..>2572
                     /locus_tag="VF308_15840"
     CDS             2139..>2572
                     /locus_tag="VF308_15840"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008449559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX7438177.1"
                     /translation="MADRRLNLDAALLDYLVAHSVREHPAQLALRKATQAHPHASMQI
                     GPEQGQLMALLVRLIGARRAIEIGVFTGYSALTVALALPADGFLLACDISDEYTRIGR
                     PFWDAAGVAHKIDLQLAPALATLDARLAAGEAERYDFAFIDA"
BASE COUNT          395 a          899 c          871 g          407 t
ORIGIN      
        1 gacgtgatcg atgcgatggg acacgacttg ccgattccgc tttggccgcg cttcgccgcc
       61 gatatcgcgg cggccgccgg ccgggcctga gccaccgacc cagcgtcgaa gggcgaccgc
      121 cttcaccgct tcgagccatg cctgaacgag ccgcggtgcg cctccagtac gccctgccga
      181 aacgggcgct gacggcgctc gccggacgca tcgcgtcggc gcgccgaggg cgagccacga
      241 cgcgcctgat ccgctggttc attcgccgct acgacgtcgc catgagcgaa gccgcgaatc
      301 ccgatccggc gagctacgcg agcttcaacg acttcttcac ccgagcgctc aagccgggcg
      361 cgcggccgtt ggcgcacgcc gacctggtct gccccatcga tggcgcgatc agccagttcg
      421 gcgcgatcga gcgcgaccag atcttccagg ccaagggcca ccactattcg accgcggcgc
      481 tcgtcggtgg cgacctgcca ctcgctgccc gtttcgaaga cgggcttttc gcgacgctct
      541 acctgagccc gcgcgactac caccgcatcc acatgccgtg cgacgggatg ttgacgcgca
      601 tgatccacgt gcccggcgac ctgttctcgg tcaaccccgt gacggcgcgc ggcgtgcccg
      661 ggctcttcgc gcgcaacgaa cgtctcgtct gcgccttcga gtcggcacgc ggcccgttcg
      721 tgctcgtgct cgtcggggcc acaatcgtcg gcagcatggc cacggtctgg cacggcgtgg
      781 tcaattcgcc gcgcgtgcgc gaattgcgcg aatggtcgta tgcggatggg caggtcgcgc
      841 tgaagcaggg tgaagagatg ggccgttttc agctcggctc gaccgtcgtg ctgctctttc
      901 cgaagagctt ccatcggttt cctgcgcaat ggatcgccgg cggcgccgtg cggctcggcg
      961 aggctatgag ccaggcgatc gagcgcgcga cggcgccgga ttcctgaggc ggcccgccga
     1021 tgttcgaatc gacggccgat cttcgtctcc cggggcctac agtgagttgg ggccgtccgt
     1081 ggcgtctctg tgtcgcgccg atgctggatt ggaccgaccg ccattgccgc ttcttccatc
     1141 ggctgctgac gcgccacacc cggctctaca ccgagatggt gaccaccggt gcattgctgc
     1201 atgccgacgt ggcgcgtcac ctcgatttca acgccgcaga gcatccggtc gcgctgcagc
     1261 tcggcggcag cgagcccgcg gaccttgccc attgcgcgtc gctcgccgag cgctggggct
     1321 acgacgaggt caacctcaac tgcggctgcc cgagcgagcg ggtgcaacgc ggcgcgttcg
     1381 gcgcctgcct gatggccgag ccgcagctgg tggccgactg cgtcgaggcg atgcgcaccg
     1441 cggtgtcggt tcccgtgacg ggcaagcacc gcatcggcat cgaccggcac gagagctacg
     1501 acttcgtccg cgatttcgtg ggcacggtgg ccgaaggcgg atgcgcggtc ttcatcgtgc
     1561 acgcgcgcaa cgcttggcta aagggaatca gcccgaagga gaaccgtgaa ctgccgccgc
     1621 tgcgccatga aatggtggcg cgtctcaaga gcgatttccc gacactgacc atcgtgctca
     1681 acgggggggt gacgacaccc gaggcgatcg cggcccacct cggcgtggtc gatggcgtga
     1741 tggtcggccg cgaggcctac caccacccct gggcgctgac gcaatgggac gagcgtttct
     1801 tcggcgccgc gccgcggctg ctcgaccgcg acgagatcga gtcggagatg gtcgactaca
     1861 tggagcgcgt ggccgccgcg ggcgaaccgt ggacccatgt gtcgcggcac atcctcggcc
     1921 tgcgcaacgg cgaggcggcg gcgcgcaaat ggcgccaggt gtggagcgac catcgattga
     1981 aattcgagag tccgcgcagc gtgtcgcggc tggcccgcgc ggccctcgcc ggcaaggatg
     2041 ggagccacgc cgcctcggtc gccgcgtgac acggaaccgg ggccggtgca aactgcgctg
     2101 ccggcaggca ctcgacatcg acgacacgga acgctcccat ggccgaccgc agactgaacc
     2161 tcgacgcggc gttgcttgac taccttgtcg cgcactcggt gcgcgaacac ccggcgcagc
     2221 tcgccttgcg caaggcgacg caagcgcatc cgcatgccag catgcagatc ggtccggagc
     2281 aagggcagtt gatggcgctc ctcgtgcgcc tcatcggcgc gcggcgggcc atcgaaatcg
     2341 gcgtcttcac cggctacagc gcgctcacgg tggcgctcgc attgccggcg gacggcttcc
     2401 tgctcgcctg cgacatcagc gacgaataca cccgaatcgg gcggccattc tgggacgcgg
     2461 ccggcgtcgc ccacaagatc gatctgcaac tcgcaccggc cctcgcgacc ctcgacgcgc
     2521 gcctggccgc cggagaagcg gagcgctacg acttcgcctt catcgacgcg ga
//
LOCUS       DASVHM010000861         2139 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1433523, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000861 DASVHM010000000
VERSION     DASVHM010000861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1433523"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VF308_15845"
     CDS             complement(<1..490)
                     /locus_tag="VF308_15845"
                     /inference="COORDINATES: protein motif:HMM:NF014477.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEX7438178.1"
                     /translation="MNGAQRRGGWLRRARPSLGTLVEIGIAADAAQPDAAFDAAFDTI
                     TQVQRCLSRFDPSSDIARFNALPGGASLPVREPTVVVLEAARALRDESGSLFDITLGS
                     GAMGWHCDGDVLHKSDDGTRLDLGGIGKGYAVDAAVQALRGRDCTAGWVNAGGDMRAF
                     GAA"
     gene            complement(487..1035)
                     /locus_tag="VF308_15850"
     CDS             complement(487..1035)
                     /locus_tag="VF308_15850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008448197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HEX7438179.1"
                     /translation="MRLVLAASALAVSAAAPASAFAIDYLNAEQAAKLIFADADIFEA
                     RDVTLDAAQSQQLDAQGVKARSAHWSLRVAKRAGATLGYVVVDEVIGKVELITYAVGI
                     SLDGTVKQIEILSYRESHGFEIRLPAWRKQFAGKGSASAIRVGEDITNISGATLSCAH
                     VTEGVRRIVAVLDAARRNGSLG"
     gene            complement(1035..>2139)
                     /locus_tag="VF308_15855"
     CDS             complement(1035..>2139)
                     /locus_tag="VF308_15855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009667058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438180.1"
                     /translation="AATSAPAPAGAVAAAPASTEPATVLSSYAEINYNRPTSATQNAQ
                     ADIHRFVLGYQHRFDEKNKVVTELEVEHAVSSASDPGEIEVEQAYLEHQINPTWAARA
                     GLFLMPAGLLNENHEPTAFYGVERNFVETAIIPSTWREGGAQIVGNFDNGLTAQGGIT
                     TSFDLNKWDAASSEGRESPLGSIHQEMALAKAHDLGVFGALNWRGVPGLLLGGSLFTG
                     NASQAQATTTSRVTLWDLHARWTPGRWDLSGVYARGTISNTATLNAPLVGNPTLIPKL
                     FDGWYVQSAYKLWSSGDYALAPFVRWEQFNTARSYADLGPGLTPAAARTERVATLGAN
                     FQISPQIVVKTDYQRFRENRDLNRFDLGLGWSF"
BASE COUNT          307 a          713 c          753 g          366 t
ORIGIN      
        1 cggccgcgcc gaaggcgcgc atgtcgccgc ccgcgttcac ccacccggcc gtgcagtccc
       61 ggcctcgcaa cgcctgcacg gctgcgtcga cggcatagcc cttgccgatg ccgccgaggt
      121 cgagccgcgt accgtcatct gatttgtgca ggacgtcgcc gtcgcaatgc caccccatgg
      181 cgccgctgcc gagcgtgatg tcgaagaggc tgccgctttc gtctcgcaac gcgcgcgccg
      241 cctccagcac gacgacggtc ggctcgcgaa cggggaggct tgcgccgccg ggaagggcgt
      301 tgaatcgggc gatgtcgctg ctcggatcga agcgggagag gcagcgctgc acctgggtga
      361 tcgtgtcgaa agctgcgtca aacgccgcgt cgggttgtgc cgcgtcggct gcaatgccga
      421 tttcgaccag cgtgccgagc gagggcctcg ccctgcgcaa ccagccgccg cgcctctgcg
      481 cgccgttcat cccaggctgc cgttgcgacg cgccgcgtcg agcaccgcga cgatgcggcg
      541 cacgccttcg gtcacgtggg cgcaactcag cgtggcgccg ctgatgttgg tgatgtcttc
      601 gccgaccctg atcgccgacg cgctgccctt tcccgcgaat tgcttgcgcc atgccggcag
      661 gcggatttcg aagccgtggc tctcgcggta ggacaggatc tcgatctgct tgaccgtgcc
      721 gtccagcgaa atgccgaccg cgtaggtgat cagttcgacc ttgccgatca cctcgtcgac
      781 gacgacgtag ccgagcgtgg caccggcgcg cttcgcgacg cgcagcgacc agtgcgccga
      841 gcgtgccttc acgccctgcg catcgagctg ctgcgactgg gcggcgtcga gcgtgacgtc
      901 gcgggcttcg aagatatcgg cgtcggcaaa gatcagcttt gcggcctgct cggcgttgag
      961 gtagtcaatc gcgaacgcgc tcgccggcgc cgcggccgag acggccaatg ccgaagccgc
     1021 gagcacgagg cgcatcagaa gctccaaccc agacccaggt cgaagcggtt cagatccctg
     1081 ttctcgcgga agcgctggta gtccgtcttg acgacgatct gcggcgagat ctggaagttc
     1141 gctcccagtg tcgcgacccg ttcggtgcga gcggccgcgg gcgtgagccc cgggccgagg
     1201 tcggcgtagg agcgcgcggt gttgaactgc tcccagcgca cgaagggcgc gagcgcgtag
     1261 tctccgctcg accagagctt gtaggcgctt tgcacatacc agccgtcgaa caacttcggg
     1321 atcagcgtcg ggttgccgac cagcggcgcg ttcaaggtcg cggtgttcga gatcgtgccg
     1381 cgggcgtaaa cgcccgagag gtcccagcgc ccgggagtcc agcgcgcgtg caggtcccac
     1441 agcgtgacgc gcgaggtggt cgtcgcctgg gcttgcgaag cgttgccggt gaacagcgat
     1501 ccgccgagca gcagcccggg aacgccgcgc cagttcagcg cgccgaacac gccgaggtca
     1561 tgggccttgg cgagcgccat ctcctggtgg atcgagccga gcggcgattc ccgcccttcg
     1621 gacgaggcgg cgtcccactt gttcaaatcg aagctggtgg tgatgccgcc ttgtgccgtg
     1681 agaccgttgt cgaagttgcc gacgatctgc gcgccgccct cgcgccaggt gctcgggatg
     1741 atcgcggtct cgacgaagtt gcgttcgacg ccgtagaacg cggtcggttc gtggttctcg
     1801 ttcaacaggc ccgccggcat caggaacagc cccgcgcgcg ctgcccaggt cgggttgatc
     1861 tggtgctcga gatacgcctg ctcgacctcg atctcgcccg ggtcgctggc cgaggacacg
     1921 gcgtgttcga cctcgagctc ggtgacgacc ttgttcttct cgtcgaagcg gtgctgatag
     1981 ccgagcacga agcggtggat gtcggcttgc gcgttctggg tcgcgctggt cggccggttg
     2041 tagttgatct cggcgtagct gctcagcacg gtggcgggct cggtggatgc gggtgccgcc
     2101 gccacggcgc ccgccggcgc gggggcgctt gttgcggcc
//
LOCUS       DASVHM010000862         2199 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_932245, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000862 DASVHM010000000
VERSION     DASVHM010000862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2199
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_932245"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..208)
                     /locus_tag="VF308_15860"
     CDS             complement(<1..208)
                     /locus_tag="VF308_15860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013586868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX7438181.1"
                     /translation="MLTFEDYRKHDAVGLAQLVARRRASAEELLATAIERSAAINPAI
                     NALSQEHFERARAAIGRGLPDGPFR"
     gene            384..2012
                     /locus_tag="VF308_15865"
     CDS             384..2012
                     /locus_tag="VF308_15865"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7438182.1"
                     /translation="MTSPLKARSRRFGLGLVVAVALTCWAPGAAQAQKVLSWGTGGDV
                     DTMDVHIAGTVASWVMYQMVYETLLTTDKDMTLRPGLAESWKQTSPTSYVLNLRKDAK
                     WSNGRPVVAADVIGSFERITGVEMNPAGVAAAKTDEEKKKASNRIASYWSRQLGVIKS
                     MSAPDDSTVRVELEKPHTAFLAALAHITAAIIPIKEFKDGSYDPTRQLMGSGPFMVSA
                     YKPKESWTLVRNPYYWRKGYPKVDRLNVLIIPDEAARVAALRDGRIDYSAFSNPDIGR
                     LVAADTKLAVTSQNTTNYFRLDINALSDKSAFKDKRVREAMSLAIDRDAIASLVFAGA
                     AKADYPVPGAFGRAACKDVDTYKLARPERLEKAKKLIAATGKSSVDVEVIAPAADPIY
                     ARIAQVIQQNVKPVGINVKIQQLPTAEAINKVFTKGEFDAALSWLAGYSDPTMVIAWW
                     NPKFAVWNTVFHEYVPALADALERVKSAADGPERDGQLAEICRMIDDGSNILALVSKV
                     DFIVHRTDTMDLRLDPVSGSSNTYQYVAEFASKR"
BASE COUNT          391 a          752 c          717 g          339 t
ORIGIN      
        1 cccggaaggg gccgtcgggc aggccgcggc cgatcgcggc acgcgcgcgc tcgaagtgct
       61 cctggctcag cgcgttgatc gcgggattga tcgcggcgct gcgctcgatc gccgtggcga
      121 gaagctcctc ggcgctcgct cggcggcgcg cgaccagttg cgcgaggccc acggcgtcgt
      181 gcttgcggta atcctcgaac gtgagcatgg acgctgcctc cccgggtccg gccggtcaag
      241 tctcgatcga atcgcagccc gaatgttagt actgccaaca cgcattgaca gactgagagt
      301 gaaataacag aatcgttttg aaccctgggt ttcgccttgc gtcgccggcg ccagccggca
      361 cgtcccctcg caggagtgtt ccgatgacca gccccctgaa agcccgcagc cgccgattcg
      421 gtctcggtct cgtcgtcgcg gtcgcactga cctgctgggc ccccggggcc gcgcaggcgc
      481 agaaggttct gtcatgggga accggcggcg acgtcgacac gatggacgtg cacatcgccg
      541 gcaccgtcgc atcgtgggtc atgtaccaga tggtctacga aacgctgctg acgaccgaca
      601 aggacatgac gctgcggccg ggcctcgccg aatcgtggaa gcagacctcg ccgacgagct
      661 atgtcctgaa tcttcgcaag gatgcgaaat ggtcgaacgg ccggccggtc gtcgcggccg
      721 acgtgatcgg cagcttcgaa cgcatcaccg gcgtcgagat gaaccccgcg ggtgtcgcgg
      781 cggccaagac cgacgaggag aagaagaagg ccagcaaccg gatcgcgtcg tactggtcgc
      841 gccagctcgg cgtcatcaag tcgatgagcg cgcccgacga cagcaccgtc cgggtcgaac
      901 tcgagaagcc gcacaccgcg ttcctggcgg cgctcgccca catcaccgcc gcgatcattc
      961 cgatcaagga attcaaggac ggcagctacg acccgacgcg ccagctgatg ggttccgggc
     1021 cgttcatggt cagcgcctac aagcccaagg aaagctggac cctggtgcgc aacccgtact
     1081 actggcgcaa gggctacccg aaggtcgacc gcctgaacgt gctgatcatt ccggacgaag
     1141 ccgcgcgcgt ggccgcgctg cgcgacggcc gcatcgacta ttcggcgttt tccaatcccg
     1201 acatcggccg cctcgtcgcc gcagacacga agctggcggt gacctcgcag aacacgacca
     1261 actacttccg cctcgacatc aacgcgctct cggacaagtc ggccttcaag gacaagcgcg
     1321 tgcgcgaggc gatgagcctg gcgatcgatc gcgacgcgat cgcgagcctc gtcttcgccg
     1381 gcgccgccaa ggcggactac ccggttcccg gcgccttcgg cagggccgct tgcaaggatg
     1441 tcgacaccta caagctcgcg cgcccggagc gcctcgagaa ggcgaagaag ctgatcgcgg
     1501 cgaccggcaa gagcagcgtc gacgtcgaag tcatcgcacc ggcggccgac ccgatctacg
     1561 cgcgcatcgc ccaggtgatc cagcagaacg tcaagccggt cggcatcaac gtgaagatcc
     1621 agcagctgcc gaccgccgag gcgatcaaca aggtcttcac gaagggcgag ttcgatgccg
     1681 ccctgtcgtg gctggccggc tacagcgacc cgacgatggt gatcgcgtgg tggaacccga
     1741 agttcgcggt ctggaacacc gtgttccacg agtacgtgcc ggcgctcgcc gacgcgctcg
     1801 aaagggtcaa gagcgcggcc gacggcccgg agcgcgacgg ccagctcgcc gagatctgcc
     1861 gcatgatcga cgacggctcg aacatcctcg cgctggtcag caaggtcgac ttcatcgtcc
     1921 accgcaccga cacgatggac ctccggctcg acccggtctc gggctcctcc aacacctacc
     1981 agtacgtggc agagttcgcc tcgaagcgct gaaacggttc cggcccgcgc gccatcgaat
     2041 gcgggccact tcctcgctcg ggcaggcacg gtgcggctga tctccttcct ggttccgcgc
     2101 ctgctggccg ccgcgctgac gatgctcggt gtggcgctgc tggtgttcgt ggcgctgcgg
     2161 ctggtcccgg gcggctatgc ggaagtcctg ctcggtccc
//
LOCUS       DASVHM010000863         2362 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1004919, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000863 DASVHM010000000
VERSION     DASVHM010000863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1004919"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1093)
                     /locus_tag="VF308_15870"
     CDS             complement(<1..1093)
                     /locus_tag="VF308_15870"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEX7438183.1"
                     /translation="MITITVASYNGAQLAQPLAGHFDEMGGNIGRADNNQLVLPDPER
                     TISRVHAQVVFRGGRYAIVDRGSNPISVNGRPLGNGQEAMLQPGDEISIGGYTMRVEA
                     AHAGPGAAAVDPFADFAGLASAGSGALPGRASAPPAAGYVDPLAGFGMAPSAPPAFAP
                     IASAPSSAAGGIPADWDPFAPDPVAKPRPEDFARSLGQAGAGGNFGLDIGGRAAPLIP
                     DMPASGSGGGDSLDNLFGLSAASGNDPFAGSVLNQAAAQPNMAAHADPMKSLNSMTRC
                     TPQAAADTLSELQSPFMLPPMAAAAPARPAPLPARPSVVPPMAAVPAKSPKGAVLSWD
                     EPSGESRTIIRPRAAAAASQAALPGDLPDL"
     gene            complement(1148..1882)
                     /locus_tag="VF308_15875"
     CDS             complement(1148..1882)
                     /locus_tag="VF308_15875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438184.1"
                     /translation="MPVAALGSAGGRATLAVHEFTLAGRNQLTLVVGASLAGQQVASQ
                     PRVAIGPTWARVRLVLIRQGQSPADANARVLGAVEWAAQEGKTYESPSTHGREVDLPV
                     SFPRWRWFDAPAIGMSAAVQRQVLEFLQQLALELAHGNADPLLSAAKLRFDELALAYQ
                     RTAAQGVQRFRDYLQQLYAAKALKVVSPVAEEVVLRPIVEGRLVECLTPLGGPVLRTQ
                     NETPGMGEHAWPLRLAMVEGKIYVLR"
     gene            complement(1948..>2362)
                     /locus_tag="VF308_15880"
     CDS             complement(1948..>2362)
                     /locus_tag="VF308_15880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438185.1"
                     /translation="SGEISHGSARSRIRVACKGRSELRMTLAQLGAEGPEGQDLKSAA
                     RVWRFPFTIEVEPLASPDLVSLYAAPAAEAALGALEGECGLRPRPDGAGLQWFFVLRT
                     QPLSVALQSADPIVGSGRHARALLPALTLVDWSAG"
BASE COUNT          362 a          825 c          848 g          327 t
ORIGIN      
        1 ccagatcggg caagtcgcca ggcaacgcgg cctgcgacgc cgccgcagcc gccctggggc
       61 gaatgatggt gcggctttca cccgagggtt cgtcccagga caggaccgcg cccttcggac
      121 tcttcgcagg gactgccgcc atcggtggca ccacggaagg ccgggccggc agcggcgcag
      181 gccgcgcggg cgcggcggcc gccatggggg gcaacatgaa gggcgattgc agctccgaga
      241 gcgtgtcggc cgctgcctga ggagtgcacc gcgtcatgct gttgagcgac ttcatcgggt
      301 cggcatgggc ggccatgttc ggctgggccg cggcctggtt cagcaccgag ccggcgaacg
      361 ggtcgttgcc gctcgccgcg ctgaggccga acaggttgtc gagggagtcg ccgccgcccg
      421 atcccgatgc gggcatgtcg ggaatgagcg gtgccgcacg gccgccgatg tcgagaccga
      481 agttgccgcc agcgcccgcc tggccgagcg agcgggcgaa atcttccggg cgcggcttgg
      541 ccaccgggtc tggcgcgaag ggatcccaat ccgccggaat tccgcccgcg gcagaagacg
      601 gcgcgctggc gatcggcgcg aatgcaggcg gcgcactcgg cgccatgccg aagccggcga
      661 gcgggtcgac atagccggct gcgggcggcg cgctcgcgcg gccgggcagg gctcccgacc
      721 ccgccgacgc gagaccggcg aaatcggcga acggatcgac ggcggccgca cccgggccgg
      781 catgggccgc ctcgacgcgc atcgtgtagc cgccgatcga gatctcgtcg ccgggctgca
      841 gcatcgcctc ttgcccgttg ccgagcggcc ggccgttgac agagatcgga ttgctgccgc
      901 ggtcgacgat ggcgtagcgg ccgccgcgga atacgacctg cgcatgaacc cgcgagatcg
      961 tgcgctccgg gtccggcagg acgagctggt tgttgtcggc gcggccgatg ttgccgccca
     1021 tctcgtcgaa gtggccggcg agcggctgcg ccaactgggc tccgttgtaa gacgctacgg
     1081 tgatggtgat cacggccttc ttcccttgta ttgaccggtc gccccgcgag cgccagccgc
     1141 ggggtgctca acgcagcaca tagatttttc cttccaccat cgccaaccgc aacggccagg
     1201 catgttcacc catgcccggc gtctcgttct gcgtgcgcaa caccgggccg ccgagcggtg
     1261 tcaggcattc gacgaggcga ccttccacaa tgggccgcag gaccacttct tcggcgactg
     1321 gcgacaccac cttcagcgcc ttcgcagcat acaactgctg caggtaatcg cgaaagcgtt
     1381 ggacgccttg ggcggcggtg cgctgatagg cgagcgcaag ctcatcgaag cgcagcttgg
     1441 ccgcgctcag cagcggatcg gcgttgccgt gagcgagttc gagcgcgagt tgctggagga
     1501 actcgaggac ctgacgctgc accgccgcgc tcatgccgat ggccggtgcg tcgaaccagc
     1561 gccagcgcgg aaagctgacg ggcagatcga cttcacggcc gtgcgtcgaa ggcgactcgt
     1621 aggtcttgcc ctcctgggcc gcccactcga ccgcaccgag cacgcgggca ttggcatcgg
     1681 ccgggctctg gccctggcga atcaggacca gccgcacgcg tgcccaggtc ggcccgatcg
     1741 ccacccgcgg ctggctcgcg acctgctggc ccgccagcga ggcgccgacg accagggtga
     1801 gctgattgcg cccggcgagc gtgaactcgt gcaccgcgag ggtcgcgcgg ccgcccgcgc
     1861 tgccgagcgc cgcgaccggc atgccgttca acgacgcttc cgcggcacaa ccgccgcatt
     1921 cgaggtcaag cacgaggagg cgctccatca gccggcgctc cagtcgacga gcgtcagtgc
     1981 gggcaagagc gcgcgcgcgt gccgaccgct gccgacgatc gggtcggcac tctgcagcgc
     2041 cacggagagc ggctgcgtcc gcaacacgaa gaaccattgc aggccggcgc catcggggcg
     2101 cggacgcaag ccgcattcgc cctccagcgc gccgagcgcg gcctcggctg cgggcgcagc
     2161 gtagaggctg acgaggtccg ggctcgcaag cggctcgacc tcgatcgtga acgggaagcg
     2221 ccagacccgg gccgcagact tcaggtcttg cccttccgga ccttcggctc ccagttgggc
     2281 gagcgtcatg cgcagctcgc tgcgaccttt gcaggcgacg cgaatgcgcg agcgcgcact
     2341 gccgtgcgag atctcgcccg ac
//
LOCUS       DASVHM010000864         2909 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_62569, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000864 DASVHM010000000
VERSION     DASVHM010000864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2909
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62569"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1439)
                     /gene="rpoN"
                     /locus_tag="VF308_15885"
     CDS             complement(<1..1439)
                     /gene="rpoN"
                     /locus_tag="VF308_15885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEX7438186.1"
                     /translation="MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQMLEQN
                     PFLETEEESAPILEPMAERISGAERAGERESERAAESGSDSADEPSAMDAVDFGTTGR
                     EDWENGTEREDFDGIQESPGKSSTVNDADDFEDRDRDAPPPSLQDHLRSQLSSLRLAD
                     LDAAAVAVLIDSLNEDGYLADPLEEIAARLSHDAGDEVQAEVLARLQCALRWLQSMEP
                     TGVGARDLGECLTLQLRAQPRCEAQMIAIIVCKNHLPLLARRDLKKLMAVTGADEELL
                     RQAQALIVALEPKPGRPFSRAEANIIVPDVIVQKSGRNWKVVLNPDVMPKLRINDAYA
                     SAIRQQRGATMNGSAAGLNSRLQEARWFVKNILQRFDTIQRVSQAIVERQKSFFTHGA
                     IAMKPLVLREIADELGLHESTISRVTTAKYLSTPFGTFELKYFFGSSLGTDAGGTASS
                     TAVRALIRQIVAAEDPAKPLSDSQISQML"
     gene            complement(1448..2224)
                     /gene="lptB"
                     /locus_tag="VF308_15890"
     CDS             complement(1448..2224)
                     /gene="lptB"
                     /locus_tag="VF308_15890"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011827750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEX7438187.1"
                     /translation="MNAVLAPSAAGVRHRLEVSGLQKSYGARMVVRDVRLAVDSGEVV
                     GLLGPNGAGKTTSFYMIVGLTAADGGRIELDGRDLSRMPIHSRARLGLSYLPQEASIF
                     RKLTVQENIRAVLELQLGPDGKAFKPAVIEELLAGLLKDLSIDKLRDSPAPALSGGER
                     RRVEIARALATQPRFILLDEPFAGVDPIAVIEIQRIISFLKGRGIGVLITDHNVRETL
                     GICDRAYIISEGQVLAEGTPAEIVENADVRKVYLGEHFRM"
     gene            complement(2221..2874)
                     /gene="lptA"
                     /locus_tag="VF308_15895"
     CDS             complement(2221..2874)
                     /gene="lptA"
                     /locus_tag="VF308_15895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007872694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0001530 - lipopolysaccharide binding
                     [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HEX7438188.1"
                     /translation="MRLPHYVPRPHAALRALAASVAALLLGVLPARGEKADRFKPLNA
                     EADLPGKIDLLNQFVAFNGNVVVTKGTMTIRAARIEIRETPDGYHTAVAIGYATRPAT
                     FRQTRDGVDEYIEGEAERLEYDGRTDTVRFVNRASVRRLRGATVADEITGNLVTYDSL
                     AEVFSVSGGAPATAANPGGRVRAVLTPKEGSAAATEATAASAAAAPLKSSTTLGAQR"
BASE COUNT          400 a          946 c         1048 g          515 t
ORIGIN      
        1 tcgagcatct gcgagatctg gctgtcggag agcggcttgg ccgggtcctc ggcggcgacg
       61 atctggcgga tcagcgcgcg cacggcggtg ctcgacgcgg tgccgccggc gtcggtgccg
      121 agcgacgagc cgaagaagta cttgagctcg aacgtgccga acggcgtcga gaggtacttg
      181 gccgtcgtga cgcgcgagat cgtcgattcg tgcaggccga gttcgtcggc gatctcgcgc
      241 agcacgagcg gcttcatcgc gatcgcgccg tgcgtgaaaa agctcttctg gcgctcgacg
      301 atcgcctgcg agacgcgctg gatcgtgtcg aagcgctgca ggatgttctt gacgaaccag
      361 cgcgcctcct gcaggcgcga attgaggccc gccgccgagc cgttcatggt cgccccgcgc
      421 tgctggcgga tcgcgctggc ataggcgtcg ttgatgcgca gcttgggcat cacgtccggg
      481 ttgagcacga ccttccagtt gcgcccggac ttctgcacga tgacgtcggg aacgatgatg
      541 ttcgcttcgg cgcggctgaa ggggcggccc ggcttgggct cgagggcgac gatgagcgcc
      601 tgcgcctggc gcagcaactc ctcgtcggcg ccggtcaccg ccatcagctt cttcaggtcg
      661 cgccgcgcga gcagcggcag gtggttcttg cagacgatga tcgcgatcat ctgggcttcg
      721 cagcgcggct gcgcgcgcag ttgcaaggtc aggcattcgc ccaggtcgcg cgcgccgacg
      781 ccggtcggct ccatgctctg cagccagcgc agcgcgcatt gcaggcgggc gaggacctcc
      841 gcctgcacct cgtccccggc gtcgtggctc agccgggcgg cgatctcctc gagcgggtcc
      901 gccagatagc cgtcttcgtt gagcgagtcg atcagcaccg ccaccgcggc ggcgtcgagg
      961 tcggcaaggc gcaggctcga gagctgggac cgcaggtggt cctgcaggct cggcggcggc
     1021 gcatcgcgat cgcggtcctc gaagtcgtcg gcgtcgttga cggtgctcga cttgcccggc
     1081 gattcttgga tgccatcgaa gtcttcgcgc tcggtgccgt tctcccagtc ttcgcggccg
     1141 gtcgtgccga aatcgaccgc gtccatcgcg ctcggctcat cggcgctgtc ggatccgctt
     1201 tcggccgcgc gttcgctttc gcgctcgccg gcgcgctcgg cgcccgaaat gcgctcggcc
     1261 attggctcga ggatcggcgc cgattcctcc tcggtttcca ggaacgggtt ttgctcgagc
     1321 atctgctcga cttcctgctg cagctccagc gtcgagagct gcagcaggcg gatcgactgc
     1381 tggagttgcg gggtgagcgc aaggtgctgt gacagccgga gctgcaagga cggcttcatg
     1441 cgcgggccta catccggaaa tgttcgccga ggtacacctt gcgcacgtcg gcgttttcga
     1501 cgatctcggc gggggtgcct tcggccagga cctgcccctc gctgatgatg taggcacggt
     1561 cgcagatgcc cagcgtttcg cgcacgttgt ggtcggtgat cagcacgccg atgccgcggc
     1621 ccttgaggaa actgatgatg cgctggatct cgatgacggc gatcgggtcg acgcctgcga
     1681 acggttcgtc gaggaggatg aagcgcggct gcgtcgccag cgcgcgggcg atctcgacgc
     1741 ggcggcgctc gccgccggac agcgcggggg ccggcgagtc gcgcagcttg tcgatgctca
     1801 ggtccttgag gaggccggcg aggagttctt cgatcaccgc gggcttgaac gccttgccgt
     1861 cgggcccgag ctgaagctcg agcaccgcgc ggatgttctc ctggaccgtg agcttcctga
     1921 agatggatgc ctcctgcggc aggtaggaga ggccgaggcg cgcccgcgag tggatgggca
     1981 tccgcgagag gtcgcgcccg tcgagctcga tgcggccacc atccgccgcg gtgagcccga
     2041 cgatcatgta gaagctcgtc gtcttgccgg cgccgttcgg gccgagcaag ccgacgacct
     2101 cgccgctgtc gaccgcgagg cgcacgtccc ggaccaccat gcgcgcgccg tacgatttct
     2161 gcaggcccga gacttcgagc cgatggcgca caccggcggc ggacggggcc aggaccgcgt
     2221 tcaccgttgc gctccgaggg tggtgctcga cttgagcggc gctgcggccg cactggcggc
     2281 cgtcgcctcg gtcgccgcgg cgcttccttc cttcggggtc agcaccgcgc gcacccgtcc
     2341 gcccgggttc gctgcagttg ccggggcgcc gccggagacg ctgaagactt cggcgaggct
     2401 gtcgtaagtg acgaggttgc cggtgatttc gtcggcgacg gtggcgccgc ggaggcgccg
     2461 caccgaagcc cggttgacga agcggacggt gtcggtcctg ccgtcgtact cgagccgttc
     2521 ggcctcgcct tcgatgtatt cgtcgacgcc gtcgcgtgtt tgccggaagg tcgcgggcct
     2581 tgtcgcatat ccgatcgcga ccgccgtgtg gtagccgtcg ggcgtctcgc ggatctcgat
     2641 ccgcgcggcg cggatcgtca tcgtgccctt ggtcacgacc acattgccgt tgaaggcgac
     2701 gaactggttc agcaggtcga tcttgcctgg caggtcagcc tcggcattga gcggcttgaa
     2761 ccgatcggct ttttccccac gggccggcaa gacgcccagc aagagcgccg cgacgctggc
     2821 cgcgagcgct cggagcgcgg catggggccg gggaacgtag tgcgggagac gcatggcggc
     2881 atgcaacttg caggagattc tatctcacg
//
LOCUS       DASVHM010000865         1637 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_932601, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000865 DASVHM010000000
VERSION     DASVHM010000865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_932601"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            98..622
                     /locus_tag="VF308_15900"
     CDS             98..622
                     /locus_tag="VF308_15900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019428610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEX7438189.1"
                     /translation="MAIYRLDNHTPHCAASAWVADSAQVMGHVELLDDTSIWFGAVLR
                     GDTELLRIGRGSNVQDGSVIHSDHGFATLLGADVTVGHQVMLHGCTVGDGSLIGIQAV
                     VLNGARIGRHCLVGAGSLVTEGKEFPDGSLIMGRPAKVVRPLTPEQIEGLMRGAAQYV
                     ENARRFKAGLVRIS"
     gene            complement(615..1406)
                     /locus_tag="VF308_15905"
     CDS             complement(615..1406)
                     /locus_tag="VF308_15905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438190.1"
                     /translation="MNDTDLAAARAALLEARRAARTLGPIPAQWVPADLRQAYRLQRA
                     MAADLGEIRGWKISGLTPEQQRAMDVPCPLAAPLLASWVRDSGTTFALRHFIRPRLEC
                     EFAFELAADLPARAAVYPRADVEAAIGALRIVVEIVDSRLPEGSPTLLQLADDLNNGG
                     FVVGPAIAGPRDLRYAEQAVVLRWRSGDATSDLARGHGSAILDGDPVAAVVLLANLPA
                     LSPRGLRRGDIVTTGSCTGAVAVPGAGEFEADFAALGTVRLRFVS"
     gene            1536..>1637
                     /locus_tag="VF308_15910"
     CDS             1536..>1637
                     /locus_tag="VF308_15910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated molecular chaperone Hsp33"
                     /protein_id="HEX7438191.1"
                     /translation="MSELHKFIFEGQPVRGLLVRLTGSWQEVLARRVQ"
BASE COUNT          258 a          545 c          597 g          237 t
ORIGIN      
        1 cagcgacagt gtcatggttg gggattctcg ccgagcgggt cggaccgctc gaacgcaggg
       61 gcgaacctaa aatgtgccgc taccgcagag gatcgaaatg gccatttacc gcctggacaa
      121 ccacaccccg cactgcgccg cctcggcctg ggtcgcggac agcgcgcagg tgatgggcca
      181 cgtggaactg ctcgacgaca cgagcatctg gttcggcgcc gtgctgcgcg gcgataccga
      241 gttgctgcgg atcggccgcg gctcgaacgt gcaggacggc agcgtgatcc attccgacca
      301 tggttttgcg acgcttctcg gcgctgacgt caccgtcggg caccaggtga tgctgcatgg
      361 gtgcaccgtc ggcgacggct cgttgatcgg gatccaggcc gtcgtgctca acggtgcgag
      421 gatcggccgt cactgcctcg tcggcgcggg ctccctcgtc accgaaggga aggaatttcc
      481 ggacggctcg ctaatcatgg gcaggccggc gaaagtcgtg cgtccgctca cccccgagca
      541 gatcgagggc ctgatgcgcg gtgccgcgca gtacgtcgag aacgcgcgcc gcttcaaggc
      601 cggcctcgtt cggatcagct gacgaatcgc aggcgcaccg ttccgagggc ggcgaagtcg
      661 gcctcgaact cgccggcgcc cggcacggcg acggcgccgg tgcagctccc ggtcgtgacg
      721 atgtcgccac ggcgcagacc gcgcgggctc agcgccggca ggttcgcgag cagcaccacg
      781 gctgcgaccg ggtcgccgtc gaggatcgcg ctgccgtggc cgcgcgcaag atcggacgtc
      841 gcgtcgccgc tgcgccagcg caagacgacg gcttgctcgg cgtagcgcag gtcgcgcggg
      901 ccggcaatcg ccggcccgac gacgaagccc ccgttgttca ggtcgtcggc cagttgcagc
      961 agcgtcggcg atccttccgg caggcgcgaa tcgacgatct cgacgacgat gcgcagggcg
     1021 ccgattgcgg cttcgacatc ggcgcgcgga tagaccgcgg cgcgggccgg caagtcggcg
     1081 gcgagttcga atgcgaattc gcattcgagg cgcggccgga tgaagtgccg cagtgcgaag
     1141 gtggtacccg agtcgcgcac ccacgaagcg agcaacggcg ccgcgagtgg gcagggcacg
     1201 tccatcgcgc gttgctgctc cggggtcagg cccgagattt tccagccgcg tatctcgccg
     1261 aggtccgccg ccatggcgcg ctgcaggcga taggcctgcc gcaggtccgc gggcacccat
     1321 tgcgccggga tcggtccgag ggtgcgggcg gcgcggcggg cttcgagaag cgcggcccgg
     1381 gccgcagcga ggtcggtgtc attcatgggg agtccggaag gtgggggcga gcccggtcgg
     1441 gcgcggactt tcgccgcacc cggataatta tcgaggcgcg cgcatttgcg acacgtgccg
     1501 cgacccaggc accccgcaac aggaagcccg cccacttgag cgaactgcac aaattcattt
     1561 tcgaaggcca gcccgtgcgc ggcctgctgg tgcgcctcac cggcagctgg caggaggtcc
     1621 tggcacgccg agtccag
//
LOCUS       DASVHM010000866         3084 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1292506, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000866 DASVHM010000000
VERSION     DASVHM010000866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3084
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1292506"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..744)
                     /locus_tag="VF308_15915"
     CDS             complement(<1..744)
                     /locus_tag="VF308_15915"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013123034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEX7438192.1"
                     /translation="MNDLKPVVDSALADFAQARTPAELEDAKARYLGKSGIVTEQLKA
                     LGALSPEQKKARGAEINVAKQAIDASLVARRAELAEAQLESRLAAQALDVTLPGRARG
                     TGGIHPVSRALERIEAIFASLGFEVADGPEIETDWYSFTALNNPDNHPARSMQDTFYV
                     DLKDDEGRWLNLRPHTSPMQIRHAQAHARRHAGASVMPDVRVIAPGRTYRVDSDATHS
                     PMFHQVEGLWLGENVSFRDLKALYLDFMQA"
     gene            complement(821..1177)
                     /gene="rplT"
                     /locus_tag="VF308_15920"
     CDS             complement(821..1177)
                     /gene="rplT"
                     /locus_tag="VF308_15920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEX7438193.1"
                     /translation="MPRVKRGVTARARHKKVLALAKGFRGRRKNVFRIAKEAVMRAGQ
                     YAYRDRRTKKRVFRQLWIARINAATRGLGVTYSKFMAGLKKAQIDIDRKVLADMAVHD
                     PAAFGAVVEKVRPHLS"
     gene            complement(1216..1419)
                     /gene="rpmI"
                     /locus_tag="VF308_15925"
     CDS             complement(1216..1419)
                     /gene="rpmI"
                     /locus_tag="VF308_15925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEX7438194.1"
                     /translation="MPKMKTKKSAAKRFRVRPGGTVKRGQAFKRHILTKKSTKTKRHL
                     RGAVTVDKTNMGHMAQMLPFAGL"
     gene            complement(1545..2093)
                     /gene="infC"
                     /locus_tag="VF308_15930"
     CDS             complement(1545..2093)
                     /gene="infC"
                     /locus_tag="VF308_15930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012838978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEX7438195.1"
                     /translation="MATFADRRQPNAERKHRLNREILAPEVRLNGPENEPLGIVPIAE
                     ALRLAGEQDVDLVEIVAQADPPVCRLMDYGKFKYQEQKRAAEAKAKQKVIEVKEVKFR
                     PGTDEGDYAIKMRNLRRFIEEDGDKGKVTLRYRGREITHQDIGMRLLERIRDELADVS
                     VVEHMPKLEGRQMVMVLAPKRK"
     gene            complement(2185..>3084)
                     /locus_tag="VF308_15935"
     CDS             complement(2185..>3084)
                     /locus_tag="VF308_15935"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011802232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEX7438196.1"
                     /translation="VLIFKSHLRSYKELPIRYGEFGQCHRNEPSGALHGIMRIRGFTQ
                     DDGHVFCTEDQILDECVAYTAQLQRVYRDFGFGDIIYKVATRPESRVGADDLWDKAEY
                     ALQEALRRSGCEFVISPGDGAFYGPKIEYTLKDALGRPWQLGTMQVDFNTAERLGGDY
                     VTETSGRAFPVMLHRAIVGSFERFIGILLEHHAGAMPAWLAPVQVSVLNIAESSAGYA
                     REVAKTLQKQGLRAESDLRNEKITYKIREHSLQKVPYILVVGDKEKASGAVSVRARGN
                     HDLGAMPVGDFIAKLAADIAQKA"
BASE COUNT          438 a          986 c         1057 g          603 t
ORIGIN      
        1 ggcctgcatg aagtcgaggt agagcgcctt caggtcgcga aagctcacgt tctcgccgag
       61 ccagaggcct tcgacctgat ggaacatcgg cgaatgcgtg gcgtcgctgt cgacgcggta
      121 ggttcgtccc ggagcgatca cgcgcacatc gggcatgacc gaagcgccgg cgtggcggcg
      181 ggcgtgcgcc tgcgcatggc ggatctgcat cggcgacgtg tgcgggcgca ggttgagcca
      241 gcgtccctcg tcgtccttga ggtcgacgta gaacgtgtcc tgcatcgagc gcgcaggatg
      301 gttgtcgggg ttgttgagcg cggtaaagct gtaccagtcg gtctcgatct cgggaccgtc
      361 ggcgacctcg aagccgagcg acgcgaagat cgcctcgatg cgttcgaggg cgcggctcac
      421 cggatggatg ccgcccgtgc cgcgagcgcg tcccggcagc gtgacgtcga gcgcttgcgc
      481 cgcgagccgg ctctcgagct gcgcttcggc gagctcggcc cggcgcgcga cgagcgacgc
      541 gtcgatcgcc tgcttggcga cgttgatctc ggcgcctcgc gccttcttct gctcgggcga
      601 caaggcgccg agcgccttca gctgctcggt gacgatgccg ctcttgccta ggtagcgcgc
      661 cttcgcgtcc tcgagctcgg caggcgtgcg cgcctgcgcg aagtccgcga gggcgctgtc
      721 gaccaccggt ttgagatcgt tcatcgtggg gcgacgtggg ccggcgtcgc aacgccggta
      781 gcgggcgtgc cggcgcctcg cggcgccggc cagggcaagt tcaggacagg tgcgggcgca
      841 ccttctcgac gacggcgccg aaggccgccg ggtcgtggac ggccatgtcg gcgaggacct
      901 tgcggtcgat gtcgatctgc gccttcttca ggccggccat gaacttgctg taggtgacgc
      961 ccaggccgcg ggtcgccgcg ttgatgcggg cgatccagag ctggcggaag acgcgcttct
     1021 tggtgcggcg gtcgcgatag gcgtactgcc cggcgcgcat gaccgcttcc ttggcgatgc
     1081 gaaagacatt cttgcggcgg ccgcggaagc ccttggcgag ggcgaggacc ttcttgtggc
     1141 gggcacgcgc ggtgacgccg cgtttgacgc gaggcatggg ttagttcctt tcgaagttga
     1201 gcaacgaggc ggcgatcaaa ggccagcgaa cggcagcatc tgcgccatgt ggcccatgtt
     1261 cgtcttgtcg accgtgacgg caccgcgcag gtggcgcttc gtcttggtcg atttcttcgt
     1321 caggatgtgg cgcttgaacg cctggccgcg cttgaccgtg ccgcccgggc ggacccggaa
     1381 ccgcttcgcg gcgctcttct tcgtcttcat cttgggcatg actgctcctt ctttgtttgc
     1441 tgctgccagg cgccgccggg agttcccgcc gtcttgcaag cctgcagccg cttgtggcga
     1501 tcgagcgtcg tgcgctcgat cgagtcgctc tcgatcccct cgccctactt ccgcttcggc
     1561 gcgagcacca tcaccatctg gcggccttcg agcttgggca tgtgctcgac gaccgagaca
     1621 tcggccagct cgtcgcggat ccgctccagc aggcgcatgc cgatgtcctg gtgcgtgatc
     1681 tcgcggccgc ggtagcgcag ggtgactttt cctttgtcgc cgtcttcctc gatgaaacgg
     1741 cgcaggttcc tcatcttgat cgcgtaatcg ccctcgtcgg tgcccgggcg gaacttcact
     1801 tccttgactt cgatgacctt ctgcttcgcc ttcgcctcgg ccgcgcgctt ctgctcctgg
     1861 tacttgaact tgccgtagtc catcagccgg cacaccggcg gatcggcctg ggcgacgatc
     1921 tcgacgagat cgacgtcctg ctcgccggcg agccgcaagg cctcggcgat cgggacgatt
     1981 cccagtggtt cgttctcggg tccgttcagt cggacttcag gggcgaggat ttcccggttg
     2041 agcctgtgct tgcgctcggc gttgggttga cggcggtcag cgaaagtagc gatgtgaaat
     2101 gcctttcatc gagccccagg cgacgggccc acaaataaac aaagcgcgcc caagggcccg
     2161 aatgacgctt cgggccggga gctctcacgc tttctgggcg atgtcggcgg cgagcttcgc
     2221 gatgaagtcg ccgacgggca tcgcaccgag gtcgtgattg ccccgggcgc gcacggaaac
     2281 ggccccgctt gccttctcct tgtcgccgac gaccaggatg tacggaacct tttgcaacga
     2341 atgctcccgt attttatagg tgattttctc gttccgcaaa tcgctctcgg ctctaagtcc
     2401 ttgtttttgc agtgttttgg caacttcccg ggcgtagccg gcggagcttt ccgcgatgtt
     2461 gagcacgctc acctggaccg gcgccagcca cgccggcatc gccccggcgt gatgctcgag
     2521 gaggatgccg atgaaacgct cgaagctgcc gacgatcgcc cggtgcagca tcaccgggaa
     2581 agcgcgcccg ctggtctcgg tgacgtagtc gccgccgagg cgttcggcgg tgttgaagtc
     2641 gacctgcatc gtgccgagct gccaggggcg gccaagcgcg tccttcagcg tgtactcgat
     2701 cttcggcccg tagaaggcgc cgtcgccggg agagatgacg aactcgcaac cggagcggcg
     2761 cagcgcctcc tgcagggcgt actcggcctt gtcccagagg tcgtcggcgc cgacccggct
     2821 ctcggggcgc gtcgcgacct tgtagatgat gtcgccgaag ccgaagtcgc ggtagacgcg
     2881 ctgcagttgc gccgtatagg cgacgcactc gtcgaggatc tggtcctcgg tgcagaacac
     2941 atggccgtcg tcctgcgtga agccgcggat ccgcatgatt ccgtgcagcg cgccgctcgg
     3001 ctcgttgcgg tggcactggc cgaactcgcc gtagcggatc ggcaactcct tgtagctgcg
     3061 gaggtgcgac ttgaagatga ggac
//
LOCUS       DASVHM010000867         3528 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_643168, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000867 DASVHM010000000
VERSION     DASVHM010000867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3528
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_643168"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..872)
                     /locus_tag="VF308_15940"
     CDS             complement(<1..872)
                     /locus_tag="VF308_15940"
                     /inference="COORDINATES: protein motif:HMM:NF024818.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEX7438197.1"
                     /translation="MSDAAHEPGLAALPTELLQALVAHSRDMLALTDATATLVWANAR
                     FAAATGYSGRPATTLLDFTIPGAEGSEARLSFARMLSSQGADSGVLQLRGPAGEPFWV
                     DVHSARVAGRIVWTLADVTRQRSLAARAARQDELLDTAQEFGRLGIWEREIPSGEGRW
                     DEHVFSFWGLDPAAGTPNYSEAIQRIHPEDRARMTYADSTRRAGRYAQRYRVIHPDGK
                     TRWIHSQWEVKNGPRGIPDRALGVMMDDTEAYDAARTLSDVNAQLKLAVDLGKIASWR
                     HDLRTGRMHWSDLA"
     gene            complement(1173..2210)
                     /locus_tag="VF308_15945"
     CDS             complement(1173..2210)
                     /locus_tag="VF308_15945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEX7438198.1"
                     /translation="MTSLASTTNHQIRLARRPVGMPVRADWSFTAEPVAPPERGGVVV
                     KTLLLSLDPAMRGWMNEGKSYIAPVAIDEVMRAGGIGVVVASESAKFAIGDHVSGALG
                     VQEYASFGERQLGRGELVGIDLRVGSPTQWLNVLGMPGMTGYFGLMDVGQPKPGETVV
                     VSGAAGAVGQTVGQLARIKGCRAVGIAGGPAKCEWVVKELGFDACIDYKAGPVKDGLK
                     AHCPKGVDIYFDNVGGEILDAVLTRLNRHARIIICGAISQYNNTEPVKGPANYLSLLV
                     NRARMEGIVVFDYDERFPQAIAEMAAYLKDGRMKSREDVVAGIDTFPETLLKLFRGEN
                     FGKLVLQVAQA"
     gene            complement(2373..2585)
                     /locus_tag="VF308_15950"
     CDS             complement(2373..2585)
                     /locus_tag="VF308_15950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011796397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEX7438199.1"
                     /translation="MTTQTGTVKWFNESKGFGFIAQDAGGADLFAHFRDIQGNGFKTL
                     AENQRVEFEVKQGQKGLQAANIRVLA"
     gene            2783..3271
                     /locus_tag="VF308_15955"
     CDS             2783..3271
                     /locus_tag="VF308_15955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007833262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX7438200.1"
                     /translation="MVINPSSDHSIESPWQHDGVRVIPADRLDRNTAQTPGMDRKAAI
                     NFARVGAQKLWAGTVHIHPDAKTGAHHHGPLESVIYVVRGRARMRWGDALEYTAEAGP
                     GDFIYIPPWVPHQEINASRDETLECVLCRSDGEAIAINLDIEPVEKPETVRWIDPTHP
                     EG"
     gene            3366..>3528
                     /locus_tag="VF308_15960"
     CDS             3366..>3528
                     /locus_tag="VF308_15960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX7438201.1"
                     /translation="MRLSVLDQSVSLAGSSEDAAIRDTLSLAEDCERLGYSRFWVSEH
                     HGLPTIVGSA"
BASE COUNT          541 a         1201 c         1234 g          552 t
ORIGIN      
        1 aacgccaggt cgctccagtg catgcgaccg gtgcgcaggt cgtggcgcca gctcgcgatc
       61 ttgccgaggt cgaccgcgag cttgagctgg gcgttgacgt cgctcagcgt tcgcgccgcg
      121 tcgtaggcct cggtgtcgtc catcatgacg ccgagggcgc ggtcgggaat cccgcgcggg
      181 ccgttcttca cttcccactg cgagtggatc cagcgcgtct tgccgtcggg atggatgacg
      241 cgatagcgct gcgcgtagcg gccggcgcgc cgggtcgaat cggcgtacgt catgcgtgcg
      301 cggtcctcgg ggtggatccg ctggatcgcc tcgctgtagt tcggcgtgcc ggcggccgga
      361 tcgaggcccc agaagctgaa cacgtgctcg tcccagcgcc cttcgcccga cgggatctcg
      421 cgctcccaga tgccgagccg gccgaactcc tgcgcggtgt cgaggagctc gtcctggcgt
      481 gccgcgcgcg cagcgagcga gcgctggcgc gtcacgtcgg cgagcgtcca gacgatgcgg
      541 ccggcgacgc gcgccgaatg cacgtcgacc cagaacggct cgccggccgg gccgcgcaac
      601 tgcagcacgc cgctgtcggc cccctgcgag ctgagcatgc gcgcgaacga cagccgcgcc
      661 tcggagccct cggcgccggg gatcgtgaaa tcgagcagcg tcgtcgccgg ccgtccggaa
      721 tagccggtcg cggcggcgaa gcgcgcgttc gcccagacga gggtggcggt ggcgtcggtc
      781 agcgcgagca tgtcgcggct gtgcgcgacg agcgcctgca gcagctcggt cggcagtgcc
      841 gccaggccgg gttcgtgcgc cgcgtcgctc atgcggggca ggtcatgtcg ccgccgcgtc
      901 gggcctaggg cctgttaacg ctatgggagg gctcacgcag gtgcgccgcc ggccaccggg
      961 caaggcgcgc gcgaggccgt gtgcctttgg cacacaacga gcgcgcaacg ccgcccggcg
     1021 gcccgcagcg catctgccca acgggtgatc tcggcaaagc ggcgcccgcc gcgttgcaaa
     1081 tgctcgccgt agcaccggct acggctgcgc tttgcgcctt gcgggcgccg ctttgccgag
     1141 tcacgcgagt cctcccatag cgttaacaga ccctaggctt gcgccacctg caggacgagc
     1201 ttgccaaaat tctcgccgcg gaagagcttg agcagcgtct ccgggaaggt gtcgatgccg
     1261 gcgaccacgt cttcgcggct cttcatccgg ccgtccttca ggtaagccgc catctcggcg
     1321 atcgcctgcg ggaagcgctc gtcgtagtcg aacacgacga tgccttccat gcgcgcccgg
     1381 ttgacgagca gcgacaggta gttcgcgggc cccttgaccg gctcggtgtt gttgtactgg
     1441 ctgatggcgc cgcagatgat gatccgcgcg tgccggttga ggcgggtcag gacggcgtcg
     1501 aggatctcgc cgccgacgtt gtcgaagtag atgtcgacgc ccttcgggca gtgcgccttc
     1561 aggccgtcct tgaccgggcc ggccttgtag tcgatgcagg cgtcgaagcc gagctccttg
     1621 acgacccact cgcacttggc cggaccgccg gcgatgccga cggcgcggca gcccttgatc
     1681 ctggcgagct ggccgacggt ctggccgacc gcgccggcgg cgcccgagac gacgaccgtc
     1741 tcgccgggct tcggctggcc gacgtccatg aggccgaagt agccggtcat gccgggcatg
     1801 ccgaggacgt tcagccactg cgtcggcgag ccgacgcgaa ggtcgatccc gacgagctcg
     1861 ccgcggccga gctggcgctc gccgaacgac gcgtattcct gcacgccgag cgcgccgctg
     1921 acgtgatcgc cgatcgcgaa cttcgcgctc tcggaggcga cgacgacgcc gatcccgccg
     1981 gcgcgcatca cctcgtcgat tgcgaccggc gcgatgtagc tcttgccttc gttcatccag
     2041 ccgcgcatcg ccgggtcgag cgaaagcagc agcgtcttga cgacgacgcc gccgcgctcg
     2101 ggcggcgcca ccggctcggc ggtgaagctc cagtcggcgc gcaccggcat gcccacgggc
     2161 cggcgcgcga ggcggatctg gtggttcgtc gtgctggcaa gggaggtcat cggcagctcc
     2221 ggtggatgcc gcgaatggta gagcctgtca acgcgccgcg agacccgcgc cgacgtgtgg
     2281 cgggttgccg atcgagtggc gagcgggcga aaaaaagccg cggcgagccg cggctttctt
     2341 cccggaggcg atccgggcgg ggcgagcccc gatcaggcga ggacgcgaat gttcgcggcc
     2401 tgcaggccct tctggccttg cttcacttcg aattcgacgc gctggttttc ggcgagcgtc
     2461 ttgaagccat tgccctggat gtcgcggaag tgggcgaaga ggtcggcgcc gcccgcgtct
     2521 tgcgcgatga agccgaagcc cttgctttcg ttgaaccact tcacggttcc ggtttgggtc
     2581 gtcataagaa atatcctgtc tacgattgaa atgaatgcgc agcaacatgc ggcgcatgca
     2641 gcgacactca agaaccgatc agggggattt caggtggccc gccgcgagga ccgcgggggt
     2701 agaacgagaa tcacgaacaa ccactgtctt gcgtataact gtggcgttaa tgtacacgac
     2761 atgagagcaa cgcgtcgcgg agatcgtcat aaacccctct tctgatcatt cgatcgagag
     2821 cccctggcag cacgacggcg ttcgcgtcat ccccgccgac cgcctcgatc gaaacaccgc
     2881 gcagacgccc gggatggatc gcaaggcggc gatcaacttc gcgcgcgtcg gcgcgcagaa
     2941 gctgtgggcc ggcacggtcc acatccatcc cgacgcgaag accggcgcgc atcaccacgg
     3001 gccgctcgag agcgtgatct acgtggtcag ggggcgtgcg cgcatgcgct ggggcgacgc
     3061 gctcgaatac accgccgagg ccggcccggg cgacttcatc tacatcccgc cctgggtgcc
     3121 gcaccaggag atcaacgcca gccgcgacga gacgctcgag tgcgtgctct gccgcagcga
     3181 cggcgaggcg atcgccatca acctcgatat cgagccggtc gaaaagcccg agaccgtgcg
     3241 ctggatcgac cccacgcacc cagagggata gtcatgaagc ccgatggcgc ctctcttcgt
     3301 tcgctgcccc ccgagggggc ggcggcgccc ttggggcggc ccggcgggcg ccgcttcgca
     3361 tgaagctgcg tctttcggta ctggaccagt cggtctcgct cgccggcagc agcgaggacg
     3421 ccgcgatccg cgacacgctc tcgctcgccg aagattgcga acggctcggc tactcgcgct
     3481 tctgggtcag cgagcaccac ggcctgccga cgatcgtcgg cagcgcgc
//
LOCUS       DASVHM010000868         2177 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1076923, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000868 DASVHM010000000
VERSION     DASVHM010000868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1076923"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..292)
                     /locus_tag="VF308_15965"
     CDS             complement(<1..292)
                     /locus_tag="VF308_15965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012353691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HEX7438202.1"
                     /translation="MSESTPSGVTSLAPAFSAIAPARPEPRKLDIRFTGSGSEYFRIW
                     IVNLLLTLVTLTLYYPWAKVRRLRYFYANTLIDGQPLDFHADPWKILRGYLLI"
     gene            423..1037
                     /locus_tag="VF308_15970"
     CDS             423..1037
                     /locus_tag="VF308_15970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HEX7438203.1"
                     /translation="MKLIGSLTSPYVRKVRVVMAEKKLDYQFELEEVWAHDAILKSNP
                     LGKVPCLVMEGGEAVFDSRVIVEYLDTRSPVSRLIPEASRERIEVRTWESLADGVLDA
                     AILARLEQTWDGRTDGQRCQAWIDRQLRKVDTSLAAISTGLAEKPWCTGIHMSLADIA
                     VGCALGYLEFRFPAIAWRSEHANLARLADKLNARPSFVDTCPPQ"
     gene            complement(1046..>2177)
                     /locus_tag="VF308_15975"
     CDS             complement(1046..>2177)
                     /locus_tag="VF308_15975"
                     /EC_number="1.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016638 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FMN-binding glutamate synthase family protein"
                     /protein_id="HEX7438204.1"
                     /translation="SAMSFGSLSGNAILALNAGANRGNFAHDTGEGSISRYHRQNGGD
                     LIWEIGSGYFGCCDEKGTFNADRFTANATDPQVKMIEIKLSQGAKPGHGGVLPGPKVT
                     LEIAAARGVAPWVDCISPASHSAFSTPIEMMHFIERLRGLSGGKPTGFKLCIGHPWEW
                     FAIAKAMQETGITPDFIVVDGAEGGTGAAPLEFTDHVGAPLQEGLLLVHNTLVGLNLR
                     ARIRLGCAGKVVSAFDVARMLALGADWCNAARGFMFALGCIQSQTCHTGNCPTGVTTQ
                     DPHREKALVVPSKAERVYQFHEQTLKALKELVQAAGLNHPNEIDASHIVRRSSEQSVK
                     LLANLLPFMRPGSLLEGDVSQQVFRTYWPMAEAASFNRVATA"
BASE COUNT          355 a          730 c          732 g          360 t
ORIGIN      
        1 cgatgagcaa gtagccgcgc aggatcttcc acgggtcggc gtgaaagtcg agcggctgac
       61 cgtcgatcag ggtgttggcg tagaagtagc gcagccgccg aaccttggcc cacgggtagt
      121 agagagtcag cgtcaccagc gtgaggagca ggttgacgat ccagatccgg aagtactcgc
      181 tgcccgatcc cgtgaagcgg atgtcgagct tgcgtggctc gggccgggcg ggcgcgatgg
      241 cggagaaagc cggcgccaac gaggtcacac ccgaaggcgt cgattcgctc atctcgtgct
      301 ggctcgcgag cgttgttgtc gagcctctcc ctggcggcaa actctaacac cggcgccgcg
      361 cgcgggcatg atcgcgcgcg gccttggcct agaatgaatc gcaattcgaa cgccccattc
      421 ccatgaaact catcggttca ctcacgagcc cgtacgtgcg caaggtgcgc gtcgtgatgg
      481 cggagaaaaa gctcgactac cagttcgaac tcgaagaggt gtgggcccat gacgccatcc
      541 tcaaatccaa tccgctcggc aaggtgccgt gcctggtgat ggaaggcggc gaagcggtgt
      601 tcgactcccg cgtcatcgtc gaatacctcg acacccgctc cccggtcagc cggctgatcc
      661 ccgaggcgag ccgcgagcgc atcgaggtgc gcacctggga gtcgctcgcc gatggcgtgc
      721 tcgacgccgc gatcctggct cgcctcgagc agacctggga cggccgcacc gacggccagc
      781 gctgccaggc ctggatcgac cgccaacttc gcaaggtcga tacatcgctc gccgccatca
      841 gcaccggcct ggccgaaaag ccctggtgca ccggcatcca catgtcgctc gccgacatcg
      901 cggtcggttg cgcgctcggc tacctggagt tccgctttcc cgccatcgcc tggcgcagcg
      961 agcacgcgaa tctcgcgcgc ctcgccgaca agctgaacgc ccgtccgagc ttcgtcgaca
     1021 cctgcccgcc gcagtagccc ggcgctcagg ccgtcgcgac gcggttgaag ctggcggcct
     1081 cggccatcgg ccagtaggtg cgaaagacct gctgcgacac gtcgccctcg agcagcgaac
     1141 cgggccgcat gaagggcagc aggttggcga ggagcttgac gctctgctcc gaactgcgcc
     1201 gcacgatgtg cgaggcatcg atttcgttcg ggtgattcag cccggccgcc tgcaccagct
     1261 ctttcagcgc cttcagcgtc tgctcgtgga actggtagac gcgctcggcc ttgctcggca
     1321 cgacgagcgc cttctcgcga tgcggatcct gggtggtcac gccggtcggg cagttgccgg
     1381 tgtggcaggt ctgcgactgg atgcagccga gcgcgaacat gaagccgcgc gccgcgttgc
     1441 accagtcggc gccgagcgcg agcatgcgcg cgacgtcgaa cgcgctcacc accttgccgg
     1501 cgcagccgag gcggattctg gcgcgcaggt tcaggcccac cagcgtgttg tggaccagca
     1561 gcaggccttc ctgcagcggc gcgccgacat ggtcggtgaa ttcgagcggc gccgcgccgg
     1621 ttccgccttc ggcgccatcg acgacgatga agtcgggcgt gatgccggtc tcctgcatcg
     1681 ccttggcgat cgcgaaccat tcccacgggt ggccgatgca gagcttgaag ccggtcggct
     1741 tgccgcccga gaggccgcgc agccgctcga tgaaatgcat catctcgatc ggcgtcgaga
     1801 aggcgctgtg gctggccggc gagatgcagt cgacccacgg cgcgacgccg cgcgccgcgg
     1861 cgatctcgag cgtcaccttc ggccccggca gcacgccgcc gtgaccgggc ttggcgccct
     1921 ggctgagctt gatctcgatc atcttcacct gcggatcggt ggcgttcgcg gtgaagcgat
     1981 cggcattgaa cgtgcccttc tcgtcgcagc agccgaagta gcccgagccg atttcccaga
     2041 tcaggtcgcc gccgttctgg cggtggtagc ggctgatcga gccctcgccg gtgtcgtgcg
     2101 cgaaattgcc gcgattggca ccggcgttga gggcgaggat cgcgttgccg ctcagcgatc
     2161 cgaagctcat cgccgag
//
LOCUS       DASVHM010000869         3005 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_62818, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000869 DASVHM010000000
VERSION     DASVHM010000869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3005
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62818"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1157)
                     /locus_tag="VF308_15980"
     CDS             complement(<1..1157)
                     /locus_tag="VF308_15980"
                     /inference="COORDINATES: protein motif:HMM:NF016764.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031267 - small GTPase binding [Evidence
                     IEA];
                     GO_process: GO:0006888 - endoplasmic reticulum to Golgi
                     vesicle-mediated transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Yip1 family protein"
                     /protein_id="HEX7438205.1"
                     /translation="MSLIQRVQAILLRPKETWPVIAAEPADTASVYSSYVIFLAAIPA
                     IAGFIGMTLIGVGGFGLSIRIPIVSGLIQMVVGFVLSLVMVFLIALLVDALAPTFGGT
                     KSQINALKLVAYGSTAGFVGGLFSLLPALAILGLIAALYSIYLIYTGLPVLMKCPPEK
                     AVAYTAVVIVCAIVAMVVLAALTSLVVPSGAMRMGGFSRATGPGDVTIKTPSGEVSIN
                     GSNMTEMARRMEEAGKRMEAAQKSGDNAAAGKAVGEMMGAMTGTNATPIASQDLKAML
                     PDSLGDLKRESVEAQSGQAMGLGGSTAKAAYAGGDRRIQLSITDLGGMGGLAAMAGWA
                     NMTVDRETDSQIEKVYKEGGRTVREEYRKDGSHGEFTTILGNGVVVEATGD"
     gene            complement(1203..>3005)
                     /gene="recG"
                     /locus_tag="VF308_15985"
     CDS             complement(1203..>3005)
                     /gene="recG"
                     /locus_tag="VF308_15985"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEX7438206.1"
                     /translation="DDLVLRFLHFYPSHQKALAAGTRVRVRGEARGGFFGLEMVHPSF
                     KSVNAETPLATALTPVYPTSAQLPQAYLRKAVAAGLARADLDELLPPSTLPPGMTSLR
                     ETLRFLHHPAPSVSLATLEDRSHPAWRRLKFEELLAQQLSQLQAKRERQRQLAPRFEP
                     RRGGLQEALLAALPFTLTAAQRRVGAEIAADLQREVPMHRLLQGDVGSGKTVVAALAA
                     AIAIDAGWQCALMAPTEILAEQHLRKLVGWLAPLGIQVAWLTGSRKGKGRAKMLEQVA
                     SGEAALVVGTHAVIQEQVVFARLGLAIIDEQHRFGVQQRLALRAKLAEQALEPHTLMM
                     SATPIPRTLAMTLFADLDISTIDELPPGRTPVVTKLFSDARRDAVIARIRDEVEAGRQ
                     VYWVCPLIEESETLDLQNATETHRQLCEAFPGRMVGLLHGRMPAAEKAAVMALFTDGQ
                     IAVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGTVASVCVLLYSAP
                     LSETAKARLKAMLETRDGFEIARRDLEIRGPGEFLGARQSGAALLRFADLSLDTDLVE
                     TARAAALHLLEHHPEAARQHAERWLGGRADYRKA"
BASE COUNT          448 a         1034 c         1047 g          476 t
ORIGIN      
        1 ttgtcgccgg tcgcctcgac gaccacgccg ttgccgagga tggtcgtgaa ctcgccgtgg
       61 ctgccgtcct tgcggtattc ctcgcgcacg gtgcggccgc cctccttgta gaccttctcg
      121 atctggctgt ccgtttcgcg gtcgaccgtc atgttggccc atccggccat cgcggcgagg
      181 ccgcccatgc cacccaggtc ggtgatcgag agctggatgc gccggtcgcc ccccgcatac
      241 gcggccttcg ctgtcgatcc gccaaggccc atcgcctggc cgctctgggc ctccaccgac
      301 tcgcgcttca ggtcgccgag cgaatcgggc agcatcgcct tcaggtcctg cgaggcgatg
      361 ggggtggcgt tggtgccagt catcgcgccc atcatctcgc ccaccgcctt gcccgcggca
      421 gcgttgtcgc ccgatttctg cgcggcttcc atgcgcttgc cggcttcttc catccttcgc
      481 gccatctcgg tcatgttcga gccgttgatg ctgacctcgc cggagggcgt cttgatcgtg
      541 acgtcgccgg gaccggtggc gcgcgagaag ccgcccatgc gcatcgcgcc ggacggcacc
      601 accagcgagg tcagcgcggc gaggaccacc atcgcgacga tggcgcagac gatcaccacc
      661 gcggtgtagg cgacggcctt ttcgggcggg cacttcatca gcaccgggag gcccgtgtag
      721 atcaggtaga tcgagtacag cgccgcgatc aggccgagga tcgcgagggc cggcagcagg
      781 ctgaagaggc cgccgacgaa gccggcggtg cttccgtagg cgacgagctt cagcgcgttg
      841 atctggctct tggtgccgcc gaacgtcggc gcgagcgcat cgaccagcag ggcgatcagg
      901 aagaccatga ccagcgacag cacaaagccg accaccatct ggatcaggcc gctgacgatc
      961 gggatccgga tgctgaggcc gaatccgccg acgccgatca acgtcatgcc gatgaagccg
     1021 gcaatcgccg gaatcgcggc caggaagatc acgtagctgc tgtacaccga ggcggtatcc
     1081 gccggttcgg cggcgatcac gggccaggtt tccttgggcc gcagcaggat ggcttgaaca
     1141 cgttgaatca aagacatggt gcaatccctt tcgttgtggg aggccgcatt ctcgtgcgtt
     1201 tcctacgcct tccgatagtc cgcccgtccg ccgagccagc gctcggcatg ctggcgcgcg
     1261 gcctcgggat ggtgctcgag caggtgcaac gcggcggcgc gcgcagtctc gacgaggtcg
     1321 gtgtcgaggc tcaggtcggc gaagcgcagc aaggccgcgc ccgactggcg cgcgccgagg
     1381 aattcgcccg gtccgcggat ctccaggtcg cggcgcgcga tctcgaagcc atcgcgggtc
     1441 tcgagcatgg ccttgaggcg cgccttcgcg gtctccgaca ggggcgcgct gtagagcagc
     1501 acgcagacgc tcgcgaccgt cccgcgcccg acccggccgc gcaactggtg caattgcgac
     1561 aggccgaagc gctcggcatg ctcgatcacc atgagcgagg cgttcggcac gtcgacaccg
     1621 acctcgatca ccgtggtcga gaccagcacc gcaatctgcc cgtcggtgaa gagcgccatc
     1681 accgcggcct tctcggcggc cggcatgcgg ccgtgcagca gtccgaccat gcgccccgga
     1741 aaggcctcgc agagctgccg atgcgtttcg gtcgcgttct gcaggtcgag cgtctcggac
     1801 tcttcgatca acgggcagac ccagtagacc tgccggccgg cctcgacctc gtcgcggatg
     1861 cgcgcgatca ccgcgtcgcg cctggcatcg gaaaagagct tggtgacgac cggggtgcgc
     1921 cccggcggca gctcgtcgat ggtgctgatg tcgaggtcgg cgaagagcgt catcgcgagc
     1981 gtgcgcggaa tcggcgtcgc gctcatcatc agggtgtgcg gctcgagggc ttgctcggcc
     2041 agcttcgcgc gcaaggcgag acgctgctgc acgccgaagc ggtgctgctc gtcgatgatc
     2101 gcgaggccga ggcgcgcgaa cacgacctgc tcctggatca ccgcgtgcgt gccgacgacg
     2161 agcgcggctt cgcccgaggc cacctgttcg agcatcttcg cgcgcccctt tcccttgcga
     2221 ctgccggtga gccaggcgac ctggatgccg agcggcgcga gccagccgac gagcttcctc
     2281 aggtgctgtt cggcgaggat ctcggtcggc gccatcagcg cgcactgcca gcccgcgtcg
     2341 atcgcgatcg ccgccgccag cgccgcgacc accgtcttgc ccgagccgac gtcgccctgc
     2401 agcaggcgat gcatcggcac ctcgcgttgc aggtcggccg cgatctcggc gccgacccgg
     2461 cgctgcgccg cggtcagcgt gaacggcagc gccgccagca gcgcttcctg cagcccgccg
     2521 cggcgcggct cgaagcgcgg cgcgagctgg cgctggcgct cgcgcttggc ctgcaactgc
     2581 gacagttgct gggcgagcag ttcctcgaac ttgagccggc gccaggccgg atgcgatcgg
     2641 tcttcgagcg tcgcgaggct gacgctcggc gccggatggt gcaggaagcg cagcgtctcg
     2701 cgcagactcg tcatgccggg aggtagggtc gacggcggca gcagttcgtc aaggtcggcg
     2761 cgcgccaggc cggccgcgac ggccttgcgc aagtaggctt gcggcagctg tgcgctggtc
     2821 gggtagacgg gagtcagcgc agttgcgagc ggcgtctcgg cgttcacgga cttgaagctc
     2881 ggatggacca tctcgagccc gaagaagccg ccgcgcgctt cgccgcgcac gcgcacccgc
     2941 gtgcccgcgg cgagcgcctt ctggtgcgac gggtagaagt gcaggaaacg caggacgagg
     3001 tcgtc
//
LOCUS       DASVHM010000870         3724 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_496404, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000870 DASVHM010000000
VERSION     DASVHM010000870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3724
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496404"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..960)
                     /locus_tag="VF308_15990"
                     /pseudo
     CDS             complement(1..960)
                     /locus_tag="VF308_15990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007830219.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
     gene            complement(1016..1573)
                     /locus_tag="VF308_15995"
     CDS             complement(1016..1573)
                     /locus_tag="VF308_15995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438207.1"
                     /translation="MNRSLLAALLAVASLALAPPAHAGATGPQPTQTITKQGRNDNKL
                     FVGINWNWGVREGATAVVGYRWAKVKDNAHVNGALVDLTIALTGAPVGLGEFHVKALQ
                     GSRSVQGELGLGYGFQGEAFLLNGGVRGPFVNLGTDYLFGKGWQPYVGIDTLDRTKGS
                     TETTTSTCPAGFDLVNGACVPTVVP"
     gene            complement(1697..3346)
                     /locus_tag="VF308_16000"
     CDS             complement(1697..3346)
                     /locus_tag="VF308_16000"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEX7438208.1"
                     /translation="MARADPSDYDAVVVGAGAGGAAAAWRMTQRGWRVLLLDAGPAFD
                     PETDYGLDRPDWEKERFRHKPGSQGELSFATLQPLEAALADLRSWSLGQGPTNREGRR
                     AVSGPGYHHVRGIGGSTLHFVGEAHRMNPAAMQMKSRFGVAADWPVSYAELEPFYVEV
                     ERLLGVAGPAAAGDRWRSAPYPLPAHPLSRASRRLAQGAAALGIAWQANPRAALSAAY
                     DGRPSCNYCGGCTHGCPRRDKGSADVTFIARALASGRCEVRPNHTLLRVVVGARGRVE
                     AIEVVDAQRRTQRIPVPRLVLACGAVETPRVLLLQRALAGASGQVGRNFLESVAWTSV
                     ADAGEPLLSFGGLPADSISWDRNRPDAIAGVVGGFRLSAAIHEADMVGPIAHAQRAVP
                     GFGRAHKERMRRAVGSLVAVGAVGESLPHEGSKIDLDPQRKDAFGRALARIHSVVDVM
                     TVKRLQAMAAAARGLLEASGATTLVEEFGTYDHFSSAHVFGTCRMGNDARASVVDAGL
                     RLHGFQNLWVCDASVFPSSGGGEAPSLTIQALALRAVDRMV"
     gene            complement(3346..>3724)
                     /locus_tag="VF308_16005"
     CDS             complement(3346..>3724)
                     /locus_tag="VF308_16005"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEX7438209.1"
                     /translation="IARVFAAFCDTLVPADALTPAASALGVPRAILDDVRGDALAERL
                     VGAGCAWLDAECAGDFARAAEAARVAAALRMQAMPWESPAGRFYQVMRNTVMADYYAQ
                     PAAWRGLALDRPPQPLGFFDAVR"
BASE COUNT          575 a         1325 c         1317 g          507 t
ORIGIN      
        1 atctgcagca cgcgctcgac cggcagaaag tcgacgccga ggtcgagcga cgaggtcgca
       61 accaccgcct tcagccgacc tcctttcaga ccgagctcga cccagtcgcg cacttcccgg
      121 tcgagcgagc catggtgcag cgcgaccagg ccggcccacg cggggcgctc ttcgagcagc
      181 aactgatacc aggcctcggc ctgcgagcgc atgttgacca agaccagcgt cgtctgcgag
      241 cgttcgatct cttcgacgac cggatgctgc atctgcttgc cgaggtggcc accccacgaa
      301 aagcggcccg ggttgtcggg cagcaacgta tcgatcacga gcgccttgtc gagccggccg
      361 cgcacaatcg cgccgtgccc gtggccgagc agcacctgca tcgcttcgcc caggttgccg
      421 agcgtcgccg acaggcccca gaccaagagc tgtgggttcc agcgcttcag gcgcgcgagc
      481 gcgagctgca cctgcacgcc gcgcttgctg cccatcagct cgtgccattc gtcgacgacg
      541 acggtgtgca cgcccgagag ctcctcttgg gcgtgctcgc gcgtgagcat caggctcagc
      601 gattcggggg tcgtgatcag tgtcgtcgga aaacgccggt cctggcacgc gcgttcggac
      661 gcgggcgtat cggcggcgag cgcgcgcatc ggcgtgagcc agagcacgcc gagcggcggc
      721 gcgtgcatcc cgtgcagcgg cacgccgagc gcccggctgc gcacgagtgc gccgaaccac
      781 accgcatagg tcttgccggc ccccgtggtc gcgtgcagca ggctgctgtg gcccctgcca
      841 tccccctgcc atcgcggccc agactttgcg ctggaatgcg aaaggctgcc agccgtgcgc
      901 ggcgaaccac gcctcggaca gcggcgccgc gcctgaccca gcagacgcct gcgccggcaa
      961 gatcctcttc gtcaccgcac gacgttacaa aacgccatgt ggcgaagctc aaaagtcagg
     1021 gcaccacagt gggaacgcag gccccgttca ccaggtcgaa gccggccggg caagtgctcg
     1081 tcgtcgtctc agtcgacccc ttcgtgcgat cgagcgtgtc gatgccgaca tacggctgcc
     1141 agcccttgcc gaagagatag tcagtgccga ggttgacgaa cggaccgcgg acgccgccgt
     1201 tgagcaggaa cgcttcgccc tggaagccgt aacccaagcc gagctcgccc tgcacactac
     1261 ggctgccttg cagcgccttg acgtggaact cgccgagacc gaccggcgcg ccggtgagcg
     1321 cgatggtcag atcgaccagg gcgccattga cgtgggcgtt gtccttgacc ttcgcccagc
     1381 gatagccgac gacggcggtg gcgccctcgc gaacgcccca gttccagttg atgccgacaa
     1441 aaagcttgtt gtcgttgcgc ccttgcttgg tgatcgtctg cgtcggctgc ggcccagtcg
     1501 cgccggcgtg tgccggcggc gcgagcgcga gagacgcaac cgccagcaag gcggcgagca
     1561 ggcttcgatt catggggtct cttcctctta ttcaaatcgc cgaccggcgg cggcgccgcc
     1621 ttgcggatga agccgattct gcacgctggg gagcccgccg ccaagcccgc attccggtgc
     1681 acgcgggcga gcccgatcaa accatgcggt cgacggcgcg cagggcgagc gcctggatgg
     1741 tcaaggaggg cgcttcacca cccccggaac tgggaaagac gctcgcgtcg cagacccaga
     1801 ggttctggaa gccgtgcagg cgcaaaccgg catcgacgac cgacgcacgc gcgtcgttgc
     1861 ccatgcggca ggtgccgaag acgtgcgccg acgagaagtg gtcgtaggtg ccgaactcct
     1921 cgacgagcgt cgtcgctccg ctcgcctcga gaaggccacg cgccgcggcc gccatcgcct
     1981 gcaggcgctt cacggtcatc acgtcgacga ccgagtggat gcgcgcgagc gcgcggccga
     2041 acgcgtcctt gcgctgcggg tcgagatcga tcttcgagcc ttcgtgcggc aggctctcgc
     2101 cgaccgcgcc gaccgcgacg aggctgccca ccgcccggcg catgcgctcc ttgtgggcgc
     2161 ggccgaagcc gggcacggcg cgctgggcgt gcgcgatcgg acccaccatg tcggcttcgt
     2221 ggatcgcggc gctgaggcga aagccaccga ccacgccggc gatcgcgtcg gggcggttgc
     2281 ggtcccagct gatcgaatcg gccggcagcc caccgaagct cagcagcggc tcgccggcgt
     2341 cggcgacgct cgtccaggcg acgctctcga gaaagttgcg tccgacctgc ccgctcgccc
     2401 ccgcgagcgc gcgctgcaac agcaggacgc gcggcgtctc gacggcgccg caagcgagca
     2461 cgaggcgcgg cacgggaatg cgctgcgtgc ggcgctgcgc gtccacgacc tcgatcgctt
     2521 cgacgcgccc gcgcgctccg acgacgacgc gcagcagcgt gtggttcggc cgcacctcgc
     2581 aacggccgct ggccagcgcc ctggcgatga aggtgacgtc ggccgagccc ttgtcgcggc
     2641 gcgggcagcc gtgtgtgcaa ccgccgcagt aattgcacga cgggcgaccg tcgtaggcgg
     2701 cggagagggc cgcccgcggg ttcgcttgcc acgcgatccc gagggcagcc gcgccctgcg
     2761 cgaggcggcg cgacgcccgc gagagcggat gcgcgggcag cggatagggc gcgctgcgcc
     2821 agcggtcgcc cgccgccgcg ggtccggcga cgccgagcaa gcgctcgacc tcgacataga
     2881 acggctcgag ctcggcgtag ctcaccggcc agtcggcggc gacaccgaac cggctcttca
     2941 tctgcatggc cgccgggttc atgcgatgcg cctcgccaac gaaatgcagg gtgctgccgc
     3001 cgatgccgcg cacgtggtgg tagcccgggc ccgagacggc gcgccgccct tcgcggttgg
     3061 tcgggccttg gcccaggctc cacgaacgca ggtcggcaag ggccgcttcg agcggctgca
     3121 gggtcgcgaa gctcagttcg ccctggctgc ccggcttgtg gcggaagcgt tccttctccc
     3181 aatcgggccg atcgaggccg tagtcggtct cggggtcgaa tgccgggccg gcatcgagga
     3241 gcaagacgcg ccagccgcgc tgcgtcatgc gccaggcggc agcggcaccg ccggcgccgg
     3301 cgccgaccac gaccgcgtcg tagtcgctgg ggtctgccct ggccatcagc gcacggcgtc
     3361 gaagaagccg agcggctgcg gcggccggtc gagggcgagg ccgcgccacg cggcgggttg
     3421 cgcgtagtag tcggccatca cggtgttgcg catgacctga tagaagcggc ccgccggcga
     3481 ttcccacggc atcgcctgca tgcgcagggc ggcggcgacg cgagcggctt cggcggcgcg
     3541 tgcaaagtcg ccggcgcatt cggcgtcgag ccatgcgcag ccggcgccga cgagccgctc
     3601 ggcgagcgca tcgccgcgca cgtcgtcgag gatggcgcgc ggcacaccga gcgccgatgc
     3661 cgccggtgtc agcgcgtcgg ccggcacgag cgtgtcgcag aacgcggcaa agacgcgagc
     3721 gatg
//
LOCUS       DASVHM010000871         7108 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1005414, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000871 DASVHM010000000
VERSION     DASVHM010000871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7108
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1005414"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..505)
                     /locus_tag="VF308_16010"
     CDS             complement(<1..505)
                     /locus_tag="VF308_16010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014899821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7438210.1"
                     /translation="MKHLSLRPVHWAAASAVLVAALVGQNVFAQAAKYGPGASATEIK
                     LGQTMPYSGPASAYGTIGKAEAAYFKMINDSGGINGRKINLISLDDGYSPPKTVEQVR
                     RLVEQDEVLALFQTLGTPSNSAIHKYVNAKKVPHLLLATGATKWGDPKNYPWTMGLNL
                     SYQTEGEI"
     gene            complement(559..1548)
                     /locus_tag="VF308_16015"
     CDS             complement(559..1548)
                     /locus_tag="VF308_16015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008907045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7438211.1"
                     /translation="MQASELTLSGAAQARTTRRNWIGIAIILAVACALPFFVGNYRVF
                     QLTLVLVYSIALLGLNLLTGYNGQISLGHGAFYAIGAYTAAILMDKAGMPYWMTIPIA
                     GFVCLVVGFLFGLPALRLEGLYLALATFALAIAMPQILKHKSLEHWTGGVQGIVILKP
                     DPPEWLKISQDQWLYFFTLAWVVLLFFVAWNLLRGRIGRAMVAIRDQPVAAQAMGVNT
                     ALYKSLTFGVSALYTGVAGALGAIAIQFVAPDSFALFLSLTLVIGVVIGGLASISGAI
                     YGALFIQFIPNVADQISKAAPWAIFGVFLIAFMYVMPTGVAGFVRMVRGKMRL"
     gene            complement(1552..2421)
                     /locus_tag="VF308_16020"
     CDS             complement(1552..2421)
                     /locus_tag="VF308_16020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012206619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7438212.1"
                     /translation="MDQLLHQILSGLATGGIYASVALALVMIYQATHLVNFAQGELAM
                     FATYLAWALIQAGVPYWGAFFITVGCAFVGGVLIERVIVRPVENAPILAVVIVFIALL
                     VIFNSLAGWIFTYTIKPFPSPFPAQPLFGNSYVSSHELGSTGITLVVLFLLFVFFRYT
                     PLGLAMRAAAQNPESSRLVGIRVGWMLALGWGLAAAIGAIAGMMVAPTVFLEPNMMGG
                     ILLYAFAGALLGGIDSPGGAVLGGFIVGVLENVVGAYVGTELKLTVALVVIVGVLVVR
                     PSGLFGKVHVTRV"
     gene            complement(2441..3181)
                     /locus_tag="VF308_16025"
     CDS             complement(2441..3181)
                     /locus_tag="VF308_16025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016451396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7438213.1"
                     /translation="MRAAAASPATPKLLEVRGLRAQYGPTKVLHGLDFEVAAGGITTI
                     LGANGAGKTTTLRAVCNMVRTEGEIVLAGERIDGLATENIVRKGVAHVPDGRGTFLNL
                     SVEENLRLGAYTRRDRSAVETDYERIFGYFPRLKERRKQQAGTLSGGEQQMLAVSRAL
                     MLRPRLLLLDEPSFGLAPLVVQHLFEIFRVINQQDGIGMLLVEQNAAMALKVAQHAYL
                     LETGRVVMSGPAEMIRRDESVRRSYLGY"
     gene            complement(3199..3966)
                     /locus_tag="VF308_16030"
     CDS             complement(3199..3966)
                     /locus_tag="VF308_16030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009516794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7438214.1"
                     /translation="MRSLLDVADVTVRFGGITALDKVSFSVERGKIVGLIGPNGAGKT
                     TLFNCLSRLYAFSEGAILFEGRPLTATPAHGIASLGIGRTFQNLALFRTMSVRENVMV
                     GGHCRTASGYVANALRLPHVRREEARLAAQVEALVGLLELGSVRDARVMDLPFGTQKR
                     VELARALAGQPTLLLLDEPAGGLNHEEVEALMELLRRIRAELQLTILLVEHHMNMVMR
                     VSDQVVALDFGRKIADGTPAEVQRNPDVIRAYLGGEQ"
     gene            complement(4110..6863)
                     /gene="polA"
                     /locus_tag="VF308_16035"
     CDS             complement(4110..6863)
                     /gene="polA"
                     /locus_tag="VF308_16035"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEX7438215.1"
                     /translation="MSDKTLLLVDGSSYLYRAFHALPDLRSPSGFPTGAIHGVVAMMK
                     KLREQFPSVHGACVFDDKGTTFRDEWYPEYKANRAPMPPDLAQQIEPIHEAVKLLGWP
                     VLMVPGIEADDAIGTISCMAAKGGFDVVISTGDKDLAQLVNERVTLINTMSNERLDVA
                     GVMEKFGVPPERIVDYLTLIGDTVDNVPGVEKVGPKTAAKWLAEHGSLEGVMAAAASM
                     KGSAGDNLRKALDWLPQGRRLVTVATNCDLSGHVLGWPEFDALALGAIDLEGLRAFYE
                     RYGFKTLKRELETSLAAGKPSVAGDGLLPPPEPAVPAETIAKHYETVLTLDALDAWIA
                     KIEAAPLTALDTETNSLDAIRAQLVGVSLSVAAGEAAYIPLRHDYAGAPDQLGVDVVL
                     ARLKPWLENASAAKLGQNIKYDQHVFAGAGIEVRGYLHDTMLQSYVLEAHKPHGLESL
                     AFRHLGRTGLTYEALCGKGANQIPFAQVEIGKATEYSCEDSEMALHVHESLWPQIEDQ
                     PGLLDIYRRIEMPASAILGRIERVGVLIDSALLRALSQELGERMLALESEVYELAGQP
                     FNLGSPKQIGEILFGKLGMPVKRKTASGAPSTDEEVLQELAADYPVAARLLEHRGLSK
                     LKGTYTDKLPLMVNPATGRVHTNYAQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAF
                     IAPPGHSILSADYSQIELRIMAHISGDAGLLRAFGEGIDVHRATASEVFGTPVAEVTS
                     EQRRYAKVINFGLIYGMSAFGLASNLGIERSAATAYIERYFARYPGVKRYMDETRQSA
                     REKGYVETLFGRRVWLPEINGGNGPRKSAAERQAINAPMQGTAADLIKLAMIAVQDVI
                     DREQRATRMIMQVHDELVFEVPDAELDWARREVPRIMAGVATLQVPLLAEVGVGRNWD
                     EAH"
BASE COUNT         1161 a         2359 c         2446 g         1142 t
ORIGIN      
        1 agatctcgcc ctcggtctgg tagctcaggt tgaggcccat ggtccagggg taattcttcg
       61 gatcgcccca cttcgtggcg ccggtcgcga gcagcaggtg tggcaccttc ttcgcgttga
      121 cgtacttgtg gatcgccgaa ttgctcggcg tgccgagggt ctggaacagc gcgagcactt
      181 catcctgctc caccagacgg cgcacctgct cgacggtttt cggcgggctg tagccgtcgt
      241 cgaggctgat caggttgatc ttgcgcccat tgatgccgcc gctgtcgttg atcatcttga
      301 agtaggcggc ttcggccttg ccgatggtcc cgtaggccga cgccgggccg ctgtacggca
      361 tggtctggcc gagcttgatc tcggtggccg aggcgccggg cccgtacttc gcggcctgcg
      421 cgaacacgtt ctggccgacg agtgcagcca ccaggacggc ggacgcggcg gcccaatgaa
      481 ccggtcgaag cgaaaggtgt ttcatgatgc ttgtctccat ggtcgatgaa tactgctcga
      541 gaaatcgaat ggcgctggct acaagcgcat tttgccccgg accatgcgaa cgaagccagc
      601 cacgccggta ggcatcacgt acatgaaggc gatcaggaag acaccgaaaa tggcccacgg
      661 cgccgctttc gagatctggt cggccacgtt cgggatgaac tggatgaaga gcgccccgta
      721 aatggcgccc gagatcgagg ccagcccgcc gatgaccaca ccgatgacca gggtgagaga
      781 caggaacagc gcgaacgagt cgggcgcgac gaactggatc gcaatggcac cgagcgctcc
      841 ggcgacgccg gtgtacagcg ccgacacgcc gaaggtcagc gatttgtaga gcgcggtgtt
      901 gacccccatc gcctgggccg ccaccggctg gtcgcggatc gccaccatcg cccggccgat
      961 tcggccgcgc agcaggttcc aggcgacgaa gaagagcaga accacccacg ccagcgtgaa
     1021 gaaataaagc cactgatcct gcgagatctt cagccactcc ggcggatcgg gcttgaggat
     1081 cacgatgccc tgcacgccac cggtccagtg ctctaggctc ttgtgcttga ggatttgggg
     1141 catcgcgatg gccagcgcga aggtcgccag cgcgaggtag aggccttcca ggcgcagcgc
     1201 cggcagcccg aacagaaaac cgacgacgag gcagacaaag ccggcgatcg gaatcgtcat
     1261 ccagtacggc atcccggcct tgtccatcag gatcgccgcg gtgtaggcgc cgatcgcgta
     1321 gaacgcgccg tggccgagcg agatctggcc gttgtagccg gtcagcaggt tgaggccgag
     1381 cagcgcgatc gaatagacga gcaccaaggt cagttggaac acgcggtagt tgccgacgaa
     1441 gaacggcagc gcgcaggcga cggcgagaat gatcgcgatg ccgatccagt tgcgccgggt
     1501 ggtgcgtgcc tgcgcggcgc ccgagagggt cagttcggaa gcttgcatcg ttcagacccg
     1561 ggtgacatgc actttgccga agagacccga cgggcgcacg accagcacgc cgacgatcac
     1621 gaccagcgcg acggtgagct tcagttcggt gccgacatag gcgccgacga cgttctcgag
     1681 cacgccgacg atgaagccgc cgagcaccgc gccgccggga ctgtcgatgc cgccgaggag
     1741 cgcgccggcg aatgcgtaga gcaggatccc gcccatcatg ttcggttcga gaaagaccgt
     1801 cggagcgacc atcatcccgg cgatcgcgcc gatcgcggcc gcgaggcccc agccgagggc
     1861 gagcatccag ccgacgcgga tgccgaccag gcggctcgac tccgggttct gcgccgccgc
     1921 ccgcatcgcc aggccgagcg gcgtgtagcg gaagaacacg aagagcagga agagcacgac
     1981 cagcgtgatg cccgtcgaac cgagctcgtg cgacgacacg tacgagttgc cgaacagcgg
     2041 ctgcgccggg aacgggctcg ggaacggctt gatcgtgtac gtgaagatcc agcccgccag
     2101 gctgttgaag atcaccagca gcgcgatgaa gacgatcacg acggcgagga tcggtgcgtt
     2161 ctcgaccggg cggacgatga cccgctcgat cagcacgccg ccgacgaacg cgcagccgac
     2221 ggtgatgaag aacgcgcccc aatacggcac gcccgcctgg atcagggccc aggcgaggta
     2281 ggtcgcgaac atcgccagct cgccctgcgc gaaattcacc aggtgcgtgg cctggtagat
     2341 catcaccagc gccagcgcga cgctggcgta gatgccgccc gtcgcaaggc cggagaggat
     2401 ctggtgaagc agctggtcca tgcgagggcc tgttcacgcg tcagtagccg aggtacgaac
     2461 ggcgcaccga ctcgtccctg cggatcattt cggccgggcc cgacatcacc acccgtccgg
     2521 tctccagcag gtaggcgtgc tgggcgacct tgagcgccat ggccgcgttc tgttcgacca
     2581 gcagcatgcc gatgccgtcc tgctggttga tgacccggaa gatctcgaag aggtgctgca
     2641 cgacgagcgg cgcgagaccg aacgacggct cgtcgagcag gagcaggcgc ggccgcagca
     2701 tcagcgcgcg cgacaccgcg agcatctgct gttcgccgcc cgagagcgtc ccggcctgct
     2761 gcttgcgccg ctccttcagg cgcggaaagt agccgaagat gcgctcgtag tcggtctcga
     2821 ccgcgctgcg atcgcgccgg gtgtaggcgc ccaggcgcaa gttttcctcg acgctcaggt
     2881 tgaggaaggt gccccggccg tccggcacgt gagccacgcc cttgcgcacg atgttctcgg
     2941 tcgcgaggcc gtcgatgcgc tcgccggcga ggacgatctc gccctcggtc cgaaccatgt
     3001 tgcagacggc gcgcaaggtc gtcgtcttgc cggccccgtt ggcgccgagg atggtcgtga
     3061 tgccgccggc ggcgacctcg aaatcgagcc catgcagcac cttggtcggg ccgtactgcg
     3121 cgcgcaggcc gcgcacctcg agcaacttcg gcgttgcggg cgaggcggcg gcagcgcgca
     3181 cggacagctc ggcctggctc attgctcgcc gcccagatag gcgcggatca cgtcggggtt
     3241 gcgctgcacc tcggccggcg tgccgtcggc gatcttgcga ccgaagtcga gcgcgacgac
     3301 ctggtccgag acccgcatca ccatgttcat gtggtgctcg acgaggagga tcgtcagctg
     3361 cagttcggcg cggatgcggc gcaggagctc catcagcgcc tcgacctctt cgtggttcag
     3421 gccaccggcc ggctcgtcga gcagcagcag cgttggctgg cccgccaggg cgcgcgccag
     3481 ctcgacacgc ttctgcgtgc cgaacggcag gtccatcacg cgggcgtcgc gcaccgaacc
     3541 cagttcgagc aagccgacca gggcctcgac ctgcgcggcg agccgggctt cctcgcgccg
     3601 gacatggggc aggcgcagcg cgtttgcgac gtagccgctg gcggtgcggc agtgcccgcc
     3661 gaccatgacg ttctcgcgca cgctcatggt ccgaaaaagg gccaggttct ggaacgtgcg
     3721 gccgatgccg agcgaggcga tgccgtgcgc cggggtcgcg gtgagcggcc ggccttcgaa
     3781 caggatcgcg ccctcgctga acgcatagag ccgcgacagg cagttgaaga gggtcgtctt
     3841 gccggcgccg ttcgggccga tcaagccgac gatcttgccg cgctcgaccg aaaacgacac
     3901 cttgtccagc gcggtgatgc cgccgaagcg gaccgtgaca tcggccacgt cgagcaagga
     3961 tcgcatggtc gcgcgcgcgt cgatgggtgc ctcctgtgcg ggtcgcccac cataaggcac
     4021 ggtctcccaa atggaacggg tgttgcccta cttgactgca agggcttgct gcactcgcac
     4081 cggccagcgc tcccgcgaga tgccggcgtt cagtgcgcct cgtcccagtt gcggccgacc
     4141 ccgacttcgg cgaggagggg aacctgcaag gtcgcgaccc ccgccatgat cctcggcact
     4201 tcgcggcggg cccagtcgag ttcggcgtcc ggcacctcga agaccagttc gtcgtgcacc
     4261 tgcatgatca tccgcgtcgc ccgctgctcg cgatcgatca cgtcctgcac cgcgatcatc
     4321 gcgagcttga tcaggtcggc agccgtgccc tgcatcggcg cgttgatggc ctggcgctcc
     4381 gccgcgctct ttctcggccc gttgccgccg ttgatctcgg gcagccagac gcgccggccg
     4441 aacagggttt cgacgtagcc cttctcgcgc gcggactggc gggtctcgtc catgtagcgc
     4501 ttgacgccgg ggtagcgggc gaagtaacgc tcgatgtagg cggtggcggc gctgcgctcg
     4561 atccccaggt tgctggccag cccgaacgcg ctcatgccgt agatcaggcc gaagttgatg
     4621 accttggcgt agcggcgctg ctcgctcgtc acctcggcca ccggcgtgcc gaaaacttcg
     4681 ctcgcggtcg cgcggtgcac gtcgatgcct tcgccgaagg cgcgcagcag cccggcgtcg
     4741 ccggagatgt gcgccatgat gcgcagctcg atctgcgaat agtcggccga gagaattgaa
     4801 tggcccggcg gggcgatgaa agcctcgcgc acgcgccggc cttcgggcgt gcggatcggg
     4861 atgttctgca ggttcgggtc gttgctcgag agccgcccgg tgacggcgac cgcctgggcg
     4921 tagttggtgt ggacgcgccc cgtggccggg ttcaccatca gcggcagctt gtcggtatac
     4981 gtgcccttca gcttcgagag gccgcgatgc tcgaggaggc gcgccgcgac cggatagtca
     5041 gcggcgagtt cctgcagcac ctcctcgtcg gtcgagggcg cgccgctcgc ggtcttgcgc
     5101 ttcacgggca tgccgagctt gccgaacagg atctcgccga tctgcttggg gctgcccaag
     5161 ttgaagggct ggcccgcgag ttcgtagacc tcgctttcga gcgcgagcat gcgctcgccg
     5221 agttcctggc tcagcgcccg caacaacgcg ctgtcgatca ggacgccgac gcgctcgatg
     5281 cgcccgagga tcgccgaggc cggcatctcg atgcgccggt agatgtcgag aaggcccggc
     5341 tggtcctcga tctgcggcca gagcgattcg tggacgtgca gcgccatctc gctgtcttcg
     5401 caggaatact cggtcgcctt gccgatctcg acctgggcga acgggatctg gttcgcgccc
     5461 ttgccgcaca gggcctcata ggtgaggccg gtgcggccga gatgccggaa cgccaggctc
     5521 tctaggccgt gcggcttgtg cgcttcgagc acgtagctct gcagcatcgt gtcgtgcaga
     5581 tagccgcgca cctcgatgcc ggcgccggcg aacacgtgct ggtcgtactt gatgttctgg
     5641 ccgagcttgg cggccgaagc gttctcgagc cacggcttca ggcgcgcgag gacgacgtcg
     5701 acgccgagct ggtcgggcgc gccggcatag tcgtgacgca gcgggatata ggcggcttcg
     5761 cccgccgcga ccgacagcga gacgccgacc agctgcgccc ggatcgcgtc gagggagttg
     5821 gtttcggtgt cgagcgcggt gagcggcgcg gcctcgatct tcgcgatcca ggcgtcgagc
     5881 gcgtcgagcg tcagcaccgt ctcatagtgc ttggcgatcg tctcggccgg caccgcgggc
     5941 tcgggcggcg gcaacaggcc gtcgcccgca acgctcggct tgcccgcggc gagcgaagtt
     6001 tcgagctcgc gcttgagggt cttgaaaccg tagcgctcgt agaaggcgcg caggccctcg
     6061 aggtctatcg cgccgagtgc cagcgcatcg aactcgggcc agccgagcac gtggccgctc
     6121 aggtcgcagt tggtcgcgac cgtcaccagg cgccggccct gcggcagcca gtcgagcgcc
     6181 ttgcgcaggt tgtcgccggc gctgcccttc atgctcgcgg cggccgccat cacgccctcg
     6241 agcgagccgt gttcggcgag ccacttcgcg gcggtcttgg gaccgacctt ctcgaccccg
     6301 ggcacgttgt cgacggtgtc gccgatcagg gtcaggtagt cgacgatccg ctccggcggc
     6361 acgccgaact tctccatcac gccggcgacg tcgaggcgtt cgttgctcat cgtgttgatc
     6421 agcgtgacgc gctcgttgac gagttgcgcc aggtccttgt cgccggtcga gatgacgacg
     6481 tcgaagccgc ccttggcggc catgcacgag atcgtgccga tcgcatcgtc ggcctcgatg
     6541 ccggggacca tcagcaccgg ccagccgagc agcttgaccg cttcatggat cggttcgatc
     6601 tgctgggcga gatccggggg catcggcgcc cggttcgcct tgtactccgg ataccactcg
     6661 tcgcggaagg tcgtgccctt gtcgtcgaac acgcaggcgc cgtgcaccga cgggaactgc
     6721 tcacgcagct tcttcatcat cgcgacgacg ccgtggatcg cgccggtcgg aaagccgctc
     6781 ggcgagcgca ggtcgggcag cgcgtggaag gcccgataca gatagctcga gccgtccacc
     6841 agcagcaggg tcttgtcgct catggatgaa ttgtgaagga aggcttctcg ggcccggccc
     6901 gcgggcggcc ggcgaccggc cctaaaatcc gcccatgaag ttcctcctgg cgccggttgc
     6961 gctgtgcatc tgtctgcaat ctggcgccca ggcgcttgcg ccggcgccga cccccgcggc
     7021 cgcggccgcg cccgcagcct cgcaaccgcg cgtcgccggt gagcccgagg tccggcacac
     7081 cgtgatcgag gacgattcca cccgcatc
//
LOCUS       DASVHM010000872         2870 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_643386, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000872 DASVHM010000000
VERSION     DASVHM010000872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2870
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_643386"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..601
                     /locus_tag="VF308_16040"
     CDS             <1..601
                     /locus_tag="VF308_16040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HEX7438216.1"
                     /translation="DKAKVVSDAMGALRVKVGHSEFGKARGLVQGDWEPLWVVDFPMF
                     EFDAAAQRWNAVHHPFTSPKDGHEDWLETDPGRCVAKAYDVVLNGIELGGGSVRIHRE
                     DVQSKVFRALKIDAAEAQAKFGFLLDALRYGAPPHGGIAIGLDRFVMLMTGAESLRDV
                     IAFPKTQRAQDLLTNAPGPVDEKQLRELHIRLRNVQSVA"
     gene            669..1130
                     /gene="nudB"
                     /locus_tag="VF308_16045"
     CDS             669..1130
                     /gene="nudB"
                     /locus_tag="VF308_16045"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013232284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008828 - dATP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0019177 - dihydroneopterin triphosphate
                     pyrophosphohydrolase activity [Evidence IEA];
                     GO_process: GO:0046656 - folic acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HEX7438217.1"
                     /translation="MSQHPKIPESVLVVIHTTDLEVLLIERADRPGYWQSVTGSKDRP
                     DEPLRATAIREVAEETGIEVGAAAVPEANLRDWDSRTVYEIYPVWRHRYAPGVMHNTE
                     HVFGLCVPRDIPVRLAPREHLHHRWLPWQDAANACFSSSNAKAIRELPHHL"
     gene            1130..1924
                     /locus_tag="VF308_16050"
     CDS             1130..1924
                     /locus_tag="VF308_16050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEX7438218.1"
                     /translation="MRPSIFHSTQHPANVLRIATYNIHKGVRGVGPRMRLEIHNLVLG
                     IEALDADLVFLQEVRRLNRAAARRFPDTHVGWPRVPQADYLAPEGYEVAYRTNAVTRD
                     GEHGNALLSRWPLGDIGHHDVSDHRFEQRGLLHVPVHWHAVKINAIVAHFGLMHSSRM
                     RQVQRLAEFIEASVPRGERLIVAGDFNDWGDKLDAPMQLVGLHRAMVDGSAPARSNTF
                     PSRLPLFSMDRIYARGLHCLTTAVPRGAAWARMSDHLPLVAELELD"
     gene            1954..>2870
                     /locus_tag="VF308_16055"
     CDS             1954..>2870
                     /locus_tag="VF308_16055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HEX7438219.1"
                     /translation="MSSRAMRPDHALTLLKGGGQLFPALVEAIDAARSEVLLETYIFD
                     FTGAPRAVAEALERAAARGVAVRVVVDGVGTGDIAPEWQARWKTAGLHWRIFNPARGW
                     RLLLPRRWRRMHRKLCVVDGAVAFCGGINLLDDLFDPNYGTLDKPRFDFAVRVTGPLV
                     EDVQETMTRLWLRLQVGREVRQHDLEGALRAVRAASKAGVDLRDGSLGLPASAGPGAV
                     AALVLRDNVRFRRRIEATYRLAISQARSEILIANAYFIPGVRLQRALLGAARRGVRIT
                     LLLQGRDEYFLQHHASRAVYGGLLEGGME"
BASE COUNT          429 a         1021 c          958 g          462 t
ORIGIN      
        1 cgacaaggcg aaggtcgtca gcgatgcgat gggcgccctg cgcgtcaagg tcgggcacag
       61 cgagttcggc aaggcgcgcg gcctggtgca aggcgactgg gagccgctct gggtggtcga
      121 cttcccgatg ttcgaattcg acgccgcggc gcagcgctgg aacgcggtgc accacccgtt
      181 cacgtcgccg aaggacggcc atgaagactg gctcgagacc gacccaggcc gctgcgtcgc
      241 caaggcctac gacgtcgtgc tcaacggcat cgaactcggc ggcggatcgg tgcggatcca
      301 ccgcgaagac gtgcagagca aggtctttcg ggcgctcaag atcgacgccg ccgaggcgca
      361 ggccaagttc ggcttcctgc tcgacgcgct gcggtacggc gcgccgccgc acggcggcat
      421 cgcgatcggg ctggatcgct tcgtgatgtt gatgacgggc gccgaatcgc tgcgcgacgt
      481 gatcgctttt ccgaagacgc agcgggcgca ggacctgctc accaacgcgc ccggcccggt
      541 cgacgagaag cagttgcgcg aactgcacat ccggctgcgc aacgttcaat ccgtggcctg
      601 agccggggcc attcggcgtg atgcagaatg aagcgggcgc ggatttcgcg cccttctttc
      661 tttgagcggt gagccagcat ccgaagattc ccgagtccgt tcttgtcgtc atccacacca
      721 ccgatctcga ggtgctgctg atcgagcgcg ccgaccggcc cggatactgg cagagcgtga
      781 ccggctcgaa agaccgcccc gacgagccgc tgcgcgccac cgcgatccgc gaagtggccg
      841 aagagaccgg catcgaggtc ggcgccgccg cggtgcccga ggcgaatctg cgtgattggg
      901 acagccgcac cgtctacgag atctacccgg tctggcgtca tcgctacgca cccggcgtca
      961 tgcacaacac cgagcatgtg ttcgggctgt gcgtgccgcg cgacatcccg gtgcggctcg
     1021 cgccgcgaga gcacctgcac catcgctggc tgccgtggca ggatgccgcc aacgcctgtt
     1081 tttcgtcttc caacgcgaag gcgatccgcg aactgcccca ccacctgtga tgcgcccatc
     1141 catcttccac tcgacccagc acccggccaa cgtgctgcgc atcgccacct acaacatcca
     1201 caagggcgtg cgcggtgtcg gtccgcgcat gcgcctcgaa atccacaatc tcgtgctcgg
     1261 catcgaagcg ctcgatgccg acctcgtctt cctgcaggaa gtgcggcgcc tcaaccgcgc
     1321 tgcggcgcgc cgtttccccg acacccacgt gggctggccg cgcgtgccgc aggccgacta
     1381 cctcgcgccc gaaggctacg aagtcgccta ccgcaccaat gcggtcacgc gcgacggcga
     1441 gcacggcaat gcgctgctct cgcgctggcc gctcggcgac atcggccacc acgatgtctc
     1501 cgaccaccgc ttcgagcagc gcggcctgct ccacgtgccg gtgcactggc acgccgttaa
     1561 gatcaacgcg atcgtcgccc acttcggcct gatgcattcg agccggatgc gccaggtgca
     1621 gcgccttgcc gagttcatcg aggcgagcgt gccgcgcggc gaacggctga tcgtcgccgg
     1681 cgatttcaac gactggggcg acaagctcga tgcgccgatg caactggtcg gcctgcatcg
     1741 ggcgatggtc gatggctccg cgcccgcgcg ctccaacacc ttcccgtcgc gcctgccgct
     1801 gttctcgatg gaccgcatct atgcgcgcgg cctgcattgc ctgaccaccg cggtgccgag
     1861 gggcgcggcc tgggcgcgca tgtccgacca ccttccgctg gtggccgaac tcgaactcga
     1921 ctgacctcgc ccttttcgtt gcgcgccgcg cccatgtcgt cccgcgcgat gcgccccgac
     1981 catgcattga cgctcctcaa gggcgggggt caactgtttc ccgcgctggt cgaggcgatc
     2041 gacgcggcgc gctccgaggt gctgctcgag acctacatct tcgacttcac cggcgcgccg
     2101 cgcgccgtcg ccgaagcgct cgagcgggcc gctgcgcgcg gcgttgcggt gcgcgtcgtc
     2161 gtcgacggcg taggcaccgg cgacatcgcg cccgaatggc aggcgcgctg gaagaccgcc
     2221 ggcctgcact ggcgcatctt caacccggcg cgcggctggc ggctgctcct gcccaggcgc
     2281 tggcgccgca tgcaccgcaa gctctgcgtc gtcgacggtg cggtcgcgtt ctgcggcggc
     2341 atcaacctgc tcgacgacct gttcgatccg aactacggca ccctcgacaa accccgtttc
     2401 gatttcgcgg tgcgcgtcac cggtccgttg gtcgaggacg tgcaggaaac gatgacgcgg
     2461 ctctggctgc gcctgcaggt cggccgcgaa gtgcgccagc acgatctcga gggtgcgctg
     2521 cgggcggtgc gcgccgcctc gaaagccggt gtggacctgc gcgatggcag cctcggcctc
     2581 ccggcctctg ccggccccgg cgcggtcgcc gcgctggtgt tgcgcgacaa cgtgcgcttc
     2641 cggcgtcgca tcgaggcgac ctaccggctg gcgatctccc aggcccggag cgagatcctg
     2701 atcgccaatg cctatttcat tcccggcgtg cggctgcagc gggcgctgct cggcgcggcg
     2761 cggcgcggcg tgcggatcac gttgctgctg caggggcgcg atgaatactt cctgcagcat
     2821 cacgccagcc gcgcggtata cggcgggctg ctcgagggcg gcatggagat
//
LOCUS       DASVHM010000873         4290 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_63125, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000873 DASVHM010000000
VERSION     DASVHM010000873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4290
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63125"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..968)
                     /locus_tag="VF308_16060"
     CDS             complement(<1..968)
                     /locus_tag="VF308_16060"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEX7438220.1"
                     /translation="MPLTLRAVSLNDLPITQPITASFGPTGGSIGRADTNTLALPDPE
                     RRISRRQADIRASGSSFVLENVGSANPIIVRDQSLAQGESAPLQHGDQVRIGGYLLEV
                     AIDDSAPEDRTAVGSAASFPDPFAPLQRAPSPPPLAAAPTQTQRSAAAFPSSSPFADL
                     GGPVSAGNPFAELLGDPVPGARPPSSSGGGSQPAPSRLPDDFDPFAAPAPPKAGPAPL
                     PSMGGGAFDDLIPSTSPASIDSFFDLKPGGSQDPLAAFLAAAPPAGSPPRDAPMSTDP
                     LALFGADAAPRRTPASESLPDQTPELRAAFLPPKPMPPIAAKAAATP"
     gene            complement(1051..1416)
                     /locus_tag="VF308_16065"
     CDS             complement(1051..1416)
                     /locus_tag="VF308_16065"
                     /inference="COORDINATES: protein motif:HMM:NF023580.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3592 domain-containing protein"
                     /protein_id="HEX7438221.1"
                     /translation="MKSMLMALLAVVGLAVLGVAAYLLVSHRPDGDAFDFSHTQRTLD
                     TGTAAKAKVLKIRDTGGRLNSNPSIEFQLEVHPADGSTFIATTRAIVSVVTLPRYQVG
                     AEIDVRYDPNDRSSVAVVQ"
     gene            complement(1445..1846)
                     /locus_tag="VF308_16070"
     CDS             complement(1445..1846)
                     /locus_tag="VF308_16070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007830901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4150 domain-containing protein"
                     /protein_id="HEX7438222.1"
                     /translation="MFANTQMMGMDTGFPDVCLTPAPPSPAPIPIPYPNIAMGPTAVP
                     NCPTILFMGAPAHNMATTIPMTNGDNAGVATGVASGTVMGPSRHLTAAFMTLLMGMPA
                     TRLTSMSLQNSTNCPGCRVVPSQVKVLLLGP"
     gene            complement(1859..2470)
                     /locus_tag="VF308_16075"
     CDS             complement(1859..2470)
                     /locus_tag="VF308_16075"
                     /inference="COORDINATES: protein motif:HMM:NF023482.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3540 domain-containing protein"
                     /protein_id="HEX7438223.1"
                     /translation="MGARPDELIRQIVDMPVNAIGRVAACDDAGNVTVFMASGRCTAR
                     RAASCLLAPEVGDSVLVCGPEVAALYVIAVLERPGDLPLRLTLGRDAEISSRGKLTVS
                     SDELVVRAGRATTLIDHLSSFGREVTASVRRIKLVGNVFESFFERVNQFAGHSARVVD
                     GVDQVRSTTIDYRAGQSLSLQGSEVIATAKTLVKIDGGQIHIG"
     gene            complement(2481..3551)
                     /locus_tag="VF308_16080"
     CDS             complement(2481..3551)
                     /locus_tag="VF308_16080"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEX7438224.1"
                     /translation="MTARTREELAALVHSGFEANALDLRGVDLRKAALSGGVFNACDF
                     SGADLADADMRQSSFFDCRFDASNLSGACTQDSFFARCTFAKAGWQRAMAANTNFAEC
                     QFSDCDFSHADLGLVVFVKSRLERIRFCGARTDRANWLECEMLGPDFSATLLDRVVVL
                     KADLRAANFTGARLKNVVFLQCQLAGQSFAGSDLAQSQLIGADVSGCDFTGASLRQCN
                     FQGGKAIATKFAKADARNAIFMACELADADFGGAMLTQAIFVEALATGADFAGADLRQ
                     ALFLRAILAQARFEGATMDEADCSHADLRDAKLNGASLRRTRLHGAQCAGAEFTDRGR
                     ALESDEPLLAAERWQAREVTPA"
     gene            complement(3548..>4290)
                     /locus_tag="VF308_16085"
     CDS             complement(3548..>4290)
                     /locus_tag="VF308_16085"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEX7438225.1"
                     /translation="FGDAVLEGAILRGAHFARARFVGASFEKVNLMGGADFREADLSG
                     SNAADVVLLDADLRGLVCRNACLDRAAFVRCNLSGSDFSGTSFERAAFIEVKASGTVF
                     AGARLVKTVFVGVNVLDGANFSGAEINTCNFRPASMRSTRFDRARIRESDFSSADLSS
                     ATFAAADATDCRFVKADLREATMAGAKLMNSSFARARLEAADLRETNLYGADLARVAI
                     DTETRFDRALTTKARVFPRRRDPGTVPS"
BASE COUNT          686 a         1413 c         1538 g          653 t
ORIGIN      
        1 ggagtcgccg cggccttggc cgcaatgggc ggcatcggct tgggcggcag gaacgcggcg
       61 cgcaactcgg gcgtctggtc cggcagcgat tcgctcgcgg gcgtgcgacg cggcgccgca
      121 tcggcgccga acaaggcgag cggatcggtc gacatcggcg catcgcgcgg gggcgatccc
      181 gccggcggcg cggcggcgag aaacgccgcc agcgggtcct gcgagccgcc cggtttgaga
      241 tcgaagaagg aatcgatcga cgccggcgac gtgctcggga tgagatcgtc gaaggcaccg
      301 cctcccatcg atggcagagg cgccggccct gccttcggcg gcgcgggcgc ggcgaacgga
      361 tcgaaatcgt cggggagccg gctcggcgcg ggctgcgacc ccccgccgct cgacgacggc
      421 ggccgcgcgc ccggcaccgg atcgccgagc agctcggcga acggatttcc cgccgacacc
      481 gggccgccca ggtcggcgaa cggcgacgag gacggaaacg cagcggcgct gcgctgcgtc
      541 tgcgtgggcg cggcggcgag cggcggcggc gacggcgcgc gctgcagtgg cgcgaagggg
      601 tccgggaacg atgccgcgga accgaccgcc gtccggtctt cgggtgcgga atcgtcgatc
      661 gctacctcga gcagatagcc gccgatgcgc acctggtcgc cgtgctgcag cggcgcggat
      721 tcgccctgcg ccagcgattg gtcgcgaacg atgatcgggt tggcgctgcc gacgttttcc
      781 aggacgaagc tcgatcccga agcacgaatg tcggcctggc ggcgcgagat tcgacgctcg
      841 gggtcgggca aggccaacgt attcgtgtcg gcgcggccga tcgaccctcc ggtcgggcca
      901 aagctcgccg tgatgggctg cgtgatcggc aggtcgttga gcgagaccgc acgaagcgtc
      961 aggggcatgt cctatcgggc gtcgcgcgcc gttcggccgg gagaaaaaga catcgtcgcg
     1021 ccgcgcgggc gtgccatcaa tgaaccaaag tcactgcacg acggcgacgc tgctgcggtc
     1081 attcgggtcg tacctgacgt cgatctcggc gccgacctga tagcgcggca gcgtcacgac
     1141 cgaaacgatc gcccgtgtcg tcgcgatgaa ggtggaaccg tcggccgggt ggacctcgag
     1201 ctggaactcg atcgaaggat tgctgttgag ccgaccgccc gtgtcgcgga tcttgaggac
     1261 cttcgccttg gccgcggtgc cggtgtcgag cgtgcgctgg gtgtggctga agtcgaaggc
     1321 gtcgccgtcc ggacggtggc tgacgagcag gtaggccgcg acgcccagca cggcaagacc
     1381 cacgaccgcg agcagggcca tcagcatcga cttcatcggc tcggtgtgcc gcggcggcgc
     1441 gcgctcaagg cccgagaaga agcaccttga cctggctggg cacaacgcga caacccgggc
     1501 agttggtgct gttctgcagc gacatgctgg tcaggcgcgt ggcgggcatg cccatgagca
     1561 gggtcatgaa cgcggccgtc aagtgacgcg acgggcccat caccgtaccg gacgcgacac
     1621 cggtggcgac gccggcgttg tcgccgttgg tcatcgggat cgtcgtcgcc atgttgtgag
     1681 ccggcgcgcc catgaaaagg atcgtcgggc agttcggcac cgcggtcggg cccatcgcga
     1741 tgttcgggta cgggatcgga atcggcgccg gcgaaggcgg cgccggggtc aggcagacat
     1801 ccgggaagcc ggtgtccatt cccatcatct gggtgttggc gaacattgcg ggcgccgatc
     1861 agccgatgtg gatctggccg ccgtcgatct tgaccagcgt cttggccgtg gcgatgactt
     1921 cggagccctg aaggctcagc gattgcccgg cgcgatagtc gatcgtcgtg ctgcgcacct
     1981 gatcgacgcc atcgacgact cgcgcactgt ggcccgcgaa ctgattgacg cgttcgaaga
     2041 aggactcgaa cacgttgccg accagcttga tcctgcgcac cgatgccgtg acctcgcgtc
     2101 cgaagctcga caggtggtcg atcagcgtcg tggcgcggcc cgcgcgcacg acaagctcgt
     2161 cgctcgagac ggtgagcttg ccgcgcgagc tgatttccgc gtcgcgcccg agcgtgagcc
     2221 gcaacggcag gtcgcccggc cgttccagga cggcgatgac gtagagcgcg gccacttcgg
     2281 gcccgcacac gagcacgctg tcgccgactt ccggcgcgag gaggcagctc gcggcacgcc
     2341 gcgccgtgca acggccgctc gccatgaaga cggtgacgtt gccggcatcg tcacaggccg
     2401 cgacccggcc gatggcgttg acgggcatgt cgacgatctg tcggatcagt tcatcgggac
     2461 gagcacccac ggtcctctcc tcaggctgga gttacttcgc gcgcttgcca gcgttcggcg
     2521 gcgagcaggg gctcgtcgct ctccagcgcg cgccctcgat cggtgaactc tgcgccggcg
     2581 cattgtgcgc cgtgcagtcg cgtgcggcgc agcgaagcac cgttcagctt cgcatcgcgc
     2641 aggtcggcgt gcgagcaatc ggcctcgtcc atcgttgcgc cctcgaacct cgcctgggcg
     2701 aggatcgcgc gcaggaacag ggcctgccgc aggtcggcac cggcgaagtc cgcgcccgtc
     2761 gcgagcgctt cgacgaagat cgcctgggtg agcatcgcgc cgccgaagtc ggcgtccgcg
     2821 agctcgcagg ccatgaagat cgcgtttcgc gcatcggcct tcgcgaattt cgtagcgatc
     2881 gccttgccgc cctggaaatt gcattggcgc aatgacgcgc cggtgaaatc gcagccgctg
     2941 acgtccgcgc cgatgagctg gctttgcgcc aggtcgctgc ccgcgaagct ctgccctgcc
     3001 agctggcact gcaggaagac gacgttcttc agccgggcac cggtgaagtt cgcagcgcgc
     3061 aggtcggcct tcagcacgac gacgcggtcg aggagcgtgg cgctgaaatc ggggccgagc
     3121 atctcgcact cgagccagtt cgcccgatcg gttcgcgcgc cgcagaagcg gatgcgctcg
     3181 agcctggact tgacgaacac caccagtccc aggtcggcgt ggctgaagtc gcagtcgctg
     3241 aactggcact cggcgaagtt ggtgttggcg gccatggctc gctgccaacc cgccttcgcg
     3301 aatgtgcagc gagcgaagaa gctgtcctgc gtgcaggctc cggacaagtt gctcgcgtca
     3361 aagcggcagt cgaagaagct cgattggcgc atgtcggcgt ccgccagatc ggcgccggag
     3421 aaatcacagg cgttgaacac gccgccgctc agcgccgcct tgcgcaagtc gacaccgcgc
     3481 agatccaggg cattggcctc gaagcccgag tgcacgagcg ctgccagctc ttcgcgcgtg
     3541 cgtgccgtca cgatggcacc gtgccgggat cgcgtcggcg cgggaagacg cgcgccttgg
     3601 tcgtcagcgc gcggtcgaac cgcgtctcgg tatcgatggc cacccgggcg agatcggcgc
     3661 catagaggtt ggtctcgcgc aggtcggccg cttccagtcg tgctctcgcg aagctgctgt
     3721 tcatcagctt cgcgcccgcc atcgtggcct cgcgcaggtc ggccttgacg aagcggcagt
     3781 cggtggcgtc ggcagcggcg aacgtcgccg agctcaggtc cgcgctcgag aagtcggatt
     3841 ctcggatccg ggcccgatcg aagcgcgtgc ttcgcatgct cgccgggcgg aaattgcagg
     3901 tgttgatctc ggcgccgctg aagttcgccc cgtccaggac gttcacaccg acgaagacgg
     3961 tcttgaccag gcgcgcgccg gcgaagaccg tgccgctcgc cttcacctcg atgaacgcgg
     4021 cgcgttcgaa gctggtgccc gagaaatcgc tgccagacag attgcagcgg acgaaagcgg
     4081 cccgatcgag gcaggcgttt cgacagacca ggccgcgcag gtcggcatcg aggaggacga
     4141 cgtcggcggc gttgctgccc gacaggtcgg cctcgcgaaa gtcggcgcca cccatcaggt
     4201 tgaccttctc gaaactggcg ccgacgaatc gcgcgcgcgc gaaatgcgca ccgcgcagga
     4261 tcgcgccttc gagcaccgcg tcgccgaaat
//
LOCUS       DASVHM010000874         1767 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_496671, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000874 DASVHM010000000
VERSION     DASVHM010000874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1767
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496671"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1288)
                     /locus_tag="VF308_16090"
     CDS             complement(<1..1288)
                     /locus_tag="VF308_16090"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX7438226.1"
                     /translation="MAAANPLPPGSSGLPLVGETLQFAKDPFAFIRQRRARFGDVFRT
                     SILGKPTVFIAGPQRAGLWLDPTKVQREGAMPANLLALFGGDPDIVPLLDGEAHAQRK
                     RSLLAAFSPEAIEAYLPGLQARIEGLLAKWLANREGPVTADLKTLAIESLAGAIFGLE
                     PGEELSRLLADNAILASAFVALPIGLPGTAYSKGLQARDRILALLEKIAQRHIDAPPA
                     RPDGLARILSAAREAGAPLDAKTAAREMHHFLLAGMIVYAELAATLRALHENPDVCER
                     LRAEVLANAPSGPIGPARLRAMPYLMQVVDEVKRTCPNVPMSFGRAKCAIDVAGYTIP
                     QGHLVMMAVYESNLDPIFTAPEKFDPERFSPERDEKKRAPDAFMPQGAGALTFHKCAG
                     YDFATAMMQLFAALALRTATWDLPSQDLSLKWVVPPE"
     gene            complement(1344..>1767)
                     /locus_tag="VF308_16095"
     CDS             complement(1344..>1767)
                     /locus_tag="VF308_16095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438227.1"
                     /translation="AEMARVVRPGGSVSSYAWDILGGGFPFAMLQEEMAALGPPPLWP
                     PSVEASRIETMRALWAGAGLVQIETREIAVTRTFADFDSFWKIAQTGPRLAPRLAATA
                     PGDLKLLKDRLRARVTPDAAGRITYGARANAIKGQVPA"
BASE COUNT          256 a          587 c          662 g          262 t
ORIGIN      
        1 gctcgggcgg caccacccac ttgagcgaca ggtcctggga gggaaggtcc catgtggccg
       61 ttctcagcgc cagcgcggcg aagagctgca tcatcgccgt cgcgaagtcg tagccggcgc
      121 atttgtggaa ggtgagggcg ccggcgccct gcggcatgaa ggcgtcgggg gcacgcttct
      181 tctcgtcgcg ctcgggagaa aaacgctcgg gatcgaactt ctccggggcg gtgaagatcg
      241 gatcgaggtt gctctcgtag accgccatca tcaccaggtg gccctgcggg atggtgtagc
      301 cggcgacgtc gatggcgcat ttggcgcgcc cgaagctcat tggcacgttc gggcaggtcc
      361 gcttcacttc gtcgaccacc tgcatgaggt acggcatcgc ccgcagccgg gccggaccga
      421 tcggccccga gggcgcgttg gcaagcacct ctgcgcgcag gcgctcgcat acgtcggggt
      481 tctcgtgaag cgcgcgcagg gtggcggcga gctcggcata gacgatcatt ccggcgagga
      541 ggaagtggtg catctcgcgc gctgccgtct tcgcgtcgag cggcgcgcct gcctcgcggg
      601 ccgcggagag gatgcgcgcg aggccgtccg gccgggccgg cggcgcatcg atgtggcgct
      661 gcgcgatctt ctccaggagc gcgaggatcc ggtcgcgcgc ttgcaggccc ttcgagtagg
      721 cggtcccggg caggccgatc ggcagcgcga cgaaggcgct ggcgaggatc gcgttgtcgg
      781 cgagcaggcg gctgagctct tctccgggct ccaggccgaa gatggcgccg gccagcgatt
      841 cgatcgcgag cgtcttcagg tcggccgtca ccgggccctc gcggttcgcc agccacttcg
      901 cgagcagtcc ttcgatccgg gcctgcaggc ccggcaggta ggcctcgatc gcctcgggcg
      961 agaacgcggc gaggaggctt cgcttgcgct gcgcgtgggc ctcgccgtcg aggagcggaa
     1021 cgatgtccgg gtcgccgccg aagagcgcca gcaggttggc cggcatcgcg ccttcgcgct
     1081 ggactttcgt cgggtcgagc cagagcccgg cgcgctgcgg gccggcgatg aacacggtcg
     1141 gcttgccgag aatgctggtg cggaagacat cgccgaaacg ggcgcgacgc tggcggatga
     1201 aggcgaaagg atccttcgcg aactggagcg tctcgccgac gagcggcagg ccgctgctgc
     1261 cgggaggaag tggattcgca gcggccatgt cgcctccttc gccgttcaaa cccagacgat
     1321 tgtagggagg gccgagaacc gcgctacgcc gggacctggc ccttgatcgc gttggcgcgt
     1381 gcgccgtagg tgatccggcc ggcggcgtcc ggcgtgaccc gggcgcgcaa gcggtccttc
     1441 agcaacttca ggtcaccggg cgccgtcgcc gccagccgcg gcgcgaggcg cggcccggtc
     1501 tgcgcgatct tccagaacga atcgaagtcg gcgaacgtcc gcgtgacggc gatctcgcgg
     1561 gtttcgatct gcaccagtcc ggcgccggcc cagagcgccc gcatcgtctc gatccgcgac
     1621 gcctcgacgc tgggcggcca gagcggcggc gggccgagcg cggccatctc ctcctgcagc
     1681 atcgcgaagg ggaagccgcc gccgaggatg tcccacgcgt acgacgagac gctgccgccg
     1741 gggcgaacga cgcgcgccat ctccgcc
//
LOCUS       DASVHM010000875         8291 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1434312, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000875 DASVHM010000000
VERSION     DASVHM010000875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 8291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8291
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1434312"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1359
                     /locus_tag="VF308_16100"
     CDS             <1..1359
                     /locus_tag="VF308_16100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019577951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX7438228.1"
                     /translation="ANVGAYPTPAGVAIQLLIGPWVSTSIYDIAVVDLQMKAVLTNTT
                     PTGPYRGAGRPEAIYIIERLFDAAAREMKLDPAELRRRNMIRPAQMPYRNQLGQTYDS
                     GMFEKILDQGLALADWNGFAARRAQSKARGLLRGRGIASFLEWTGGNALEEKVSVDVT
                     ADGIIEIFSATQAMGQGIATSYAQLAVDVFGVPIDRIRIVQGDTARGNGFGSAGSRSL
                     FTGGSAVRVASERTIEHAKALAGEALEASAGDIEYRAGRFAVVGTDLGIDLFALAGKQ
                     PGQRIHLEASAIAGGPTWPNACHVCEVEVDPESGDVRVVSYSSVNDIGRVVSPTIARG
                     QVDGGAVQGLGQALCEQVVYDGESGQLVTGSFMDYAVPRADIGVAFRTEFDTSIPCLL
                     NPLGVKGVGELGTIGATPAAMNAVVDALDHAGLGRAAEKIQMPATSERVWQALRGVAA
                     PR"
     gene            complement(1366..2205)
                     /locus_tag="VF308_16105"
     CDS             complement(1366..2205)
                     /locus_tag="VF308_16105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438229.1"
                     /translation="MPSRRALLTLLAAAAATACSSPPAAAVGSLVDVQIVDRGRGETL
                     PTWRHRGASYVAGRPGDRYAVRLTNRSPGRVLVVLSVDGVNAVSGETAAVSQTGYVLA
                     PYQSAEITGWRKSYSEAAAFYFTALPDSYASRTGRPDNVGVIGAAVFRERVPEAVGGW
                     FQPAPSVAKESAASGRIDAQRQAPATAAADAAAPSQGGARRSESEFAARDEKKLGTGH
                     GEREYSPTSQTAFERTSSQPAEVVQVRYDSYANLLASGVIPRPRPMPRQPDAFPSFVP
                     DPG"
     gene            complement(2289..3005)
                     /locus_tag="VF308_16110"
     CDS             complement(2289..3005)
                     /locus_tag="VF308_16110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438230.1"
                     /translation="MPSLFRRRQIWLPTWWGTLLLIAFAAAAAVIALRQLGSFLAPTD
                     PAIGRDGRGASTLIVEGWLDEDGLDDAIAVVARGRYERVVTSGSPIESWREGQPWPTY
                     AERAADYLRRHGVNRIPVVPVPAPRSAQDRTFLSAVVVRDWLRQQGSAVDAVDLFSGG
                     VHARRSWLVYRIAFGPEVEVGVFAARPRRYPLERWWATSDGAKSVLDEAIGLAWTKCC
                     FWPPAPGSHEERWAVPKSPA"
     gene            3241..3828
                     /locus_tag="VF308_16115"
     CDS             3241..3828
                     /locus_tag="VF308_16115"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX7438231.1"
                     /translation="MFSIRSFMRQSATAALVLAAAAAGPVHAVNIETGSYANSGIGSE
                     FASPFDNFIITGDTITVALSTTPVAVSLGTFSFEVGANCWSCTLTPSFDALIDVTVDG
                     ITHQIDLPYSWYSSGPSDFLSFSTPAPVVFDFDSLGLVTIAIDSIGVLSSSGSTIYGN
                     VNATVWATPVPEPASYAMMLAGFGVMAFVARRRQR"
     gene            3952..5010
                     /locus_tag="VF308_16120"
     CDS             3952..5010
                     /locus_tag="VF308_16120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013206815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEX7438232.1"
                     /translation="MAFGPAAPALGAALLFGASTPLAKLLVGEVPPLLLAGLLYLGSG
                     LGLGALLLIRTIAAKATEDEVARLTIPRRDVGWLLGAIVAGGMAGPALLMAGLARTSA
                     ASASLLLNIEGVATAAIAWLVFKENTDRRIVLGMAAIVTGGALLAWQPGSWALSTGAL
                     LVVGACLCWAIDNNLTRKVSTNDAMLIAGIKGVVAGTCNTALAVAGGAHFPALPLVGW
                     SLLVGLVGYGVSLMLFVVALRTLGTARTGAYFSIAPLFGVALALFLWPALPSATFWVS
                     AALMGMGLWLHLTERHLHAHEHIAMEHDHPHAHDRHHQHGHEFPWDGGEPHVHPHAHV
                     AMTHEHVHYPDIHHRHGH"
     gene            5077..5565
                     /locus_tag="VF308_16125"
     CDS             5077..5565
                     /locus_tag="VF308_16125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007828402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin family protein"
                     /protein_id="HEX7438233.1"
                     /translation="MNTKLVLNAAALGLAIVAGSVGAHGDERPRVFDASKVEDTAFGR
                     EGNPKAVTRTIKVEMADNMRFTPANVTVKRGETIKFVVHNGGKLPHEMVLGTKQAIKE
                     HAELMKKFPEMEHADANMAHVQPGKVGKIVWQFAKPGEFEFACLQPGHFEAGMVGKVT
                     VK"
     gene            5562..5897
                     /locus_tag="VF308_16130"
     CDS             5562..5897
                     /locus_tag="VF308_16130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-binding protein"
                     /protein_id="HEX7438234.1"
                     /translation="MKALHLFAVAMLTISAVAHSQQATRSASTPSAIASAAASMTEGE
                     VRKVDKEAGKVTLRHGPIDNLGMPAMTMVFRVADPKMLDQVKEGERVRFSAERLNGAI
                     TLTRIEAAK"
     gene            complement(5948..6307)
                     /locus_tag="VF308_16135"
     CDS             complement(5948..6307)
                     /locus_tag="VF308_16135"
                     /inference="COORDINATES: protein motif:HMM:NF015581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HEX7438235.1"
                     /translation="MLSDIDVQQAMKEKLGVEMPPYRILGACNPPLAHQALRSEPDIG
                     LLLPCNVIVREDALGRFVVGFLDPQIMVSVVGKPEIHSVADEAERRLRRVCASLGGTA
                     TANRVTSNEKRRSVDED"
     gene            complement(6618..>8291)
                     /locus_tag="VF308_16140"
     CDS             complement(6618..>8291)
                     /locus_tag="VF308_16140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008903035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7438236.1"
                     /translation="RFLIFIYRPVIAWVMRWKLLTIGLALVALGVSAWPAMRLGTEFM
                     PTLNEGTLLYMPASLPGMSITKAAEVLQTQDKIIKSFPEVSSVFGKAGRANTATDPAP
                     TEMFETVINLKPQAEWRPGMTTDKLIGELDKALQFPGISNAWTMPIKARIDMLSTGIR
                     TPIGIKVFGKDLGEMERLAKEIEAVVKKVPGTTSAFAERLTGGSYLNIEPDREQLARY
                     GLSVGELLEVIGTALGGDMVTTTVEGRERFGVTVRYPRELRANPEQIEREVLVPIMGG
                     AMVPLGQVAKVRVARGAPGIRTENALLSAYIFVDIRGRDIGSYVADARKAVAEQVKFP
                     AGYYIAWSGQFEAMERATDKMKIVVPVTLLAIFLLLYLNFRRMTETLIVMLSVPFALV
                     GGVWLMWLLGYNLSIAVAVGFIALAGVAAETGVVMLIYLDHAWEQAQERCRAEGRPPR
                     PADLYAAVMEGAVERVRPKMMTVVAIMAGLLPIMWGSGTGSEVMSRIAAPMVGGMISS
                     TVLTLCVIPALYALVKQWQLGRTPRNEPAPPANVVHSAGEDPVGVASTR"
BASE COUNT         1345 a         2859 c         2789 g         1298 t
ORIGIN      
        1 gccaacgtcg gcgcgtatcc gacgccggcg ggcgtcgcga tccagctgct gattggcccg
       61 tgggtctcga ccagcatcta cgacatcgcc gtcgtcgacc tgcagatgaa ggcggtgctg
      121 acgaacacga cgccgaccgg cccgtatcgc ggcgccgggc ggcccgaggc gatctacatc
      181 atcgagcggc tgttcgatgc cgcggcgcgc gagatgaagc tcgatcccgc cgagctgcgc
      241 cgccgcaaca tgatccggcc ggcgcagatg ccgtacagga accagctcgg ccagacctac
      301 gacagcggca tgttcgagaa gatcctcgat caaggtcttg cgctcgccga ctggaacggc
      361 ttcgcggcgc gccgcgccca gtcgaaggcg cgcggcctgc tgcgcggccg cggcatcgcc
      421 tcgttcctcg aatggaccgg tggcaacgcc ctcgaggaga aggtcagcgt cgacgtcacg
      481 gccgacggca tcatcgagat cttctcggcg acgcaggcga tgggccaggg catcgcgacc
      541 agctacgccc agctcgcggt cgacgtcttc ggcgtgccga tcgacaggat ccgcatcgtc
      601 cagggcgaca ccgcgcgcgg caacggcttc ggcagcgccg gctcgcgctc gctcttcacc
      661 ggcggctcgg cggtccgggt cgcatccgag cgaacgatcg agcacgcgaa ggcgctcgcc
      721 ggggaggcgc tggaagcgtc ggccggagac atcgaatacc gcgccggccg cttcgccgtc
      781 gtcggcaccg atctcggcat cgacctgttc gcgctcgccg gcaagcagcc ggggcagcgg
      841 atccatctcg aggcgtcggc gatcgccggc gggccgacgt ggccgaacgc gtgccacgtc
      901 tgcgaggtcg aggtcgatcc cgagagcggc gacgttcgcg tcgtctcgta ttcgtcggtc
      961 aacgacatcg gccgcgtcgt cagcccgacg atcgcgcgcg gccaggtcga cggaggcgcc
     1021 gtgcagggcc tcggccaggc gctctgcgag caggtcgtct acgacggcga gagcggccag
     1081 ctcgtcaccg gcagcttcat ggactacgcg gtgccgcgcg ccgacatcgg cgtcgccttc
     1141 cgcaccgagt tcgacacctc gatcccgtgc ctgctcaacc cgctcggcgt caagggcgtc
     1201 ggcgagctcg gcacgatcgg cgcgacgccg gcggcgatga acgccgtcgt cgacgcgctc
     1261 gatcacgccg gcctcggccg cgccgccgag aagatccaga tgccggcgac gtccgagcgc
     1321 gtctggcagg cgctgcgcgg cgtcgcggcg ccgcgctagc gtcgctcagc ccgggtcggg
     1381 aacgaacgac gggaacgcat ccggctggcg cggcatcggc cgcggccgcg ggatgacgcc
     1441 gctcgcgagc aggttggcgt agctgtcgta gcgcacctgg acgacctcgg ccggctgcga
     1501 cgacgtgcgc tcgaacgccg tctggctggt cggcgagtat tcgcgctcgc cgtggccggt
     1561 gccgagcttc ttctcgtcgc gcgccgcgaa ttccgactcc gagcgccgtg ccccaccctg
     1621 cgacggcgcg gccgcgtcgg ccgccgccgt cgcaggcgcc tggcgttgcg cgtcgatccg
     1681 gccgctcgcc gcgctttcct tggcgaccga cggcgccggc tggaaccagc cgccgaccgc
     1741 ctcggggacg cgctcgcgga acaccgccgc gccgatcacg ccgacgttgt cgggccggcc
     1801 ggtgcgcgac gcgtacgaat cgggcagggc agtgaagtag aacgccgccg cctcggaata
     1861 gctcttgcgc cagccggtga tctcggccga ctggtacggc gcgagcacgt agccggtctg
     1921 cgacaccgca gcggtctcgc cgctgaccgc gttgacgccg tcgaccgaga ggacgacgag
     1981 gacgcgaccg ggcgaccggt tcgtcaggcg gacggcgtag cggtcgccgg gtcggccggc
     2041 gacgtagctg gcgccgcgat ggcgccacgt cgggagcgtc tcgccgcggc cgcggtcgac
     2101 gatctgaacg tcgacgagcg agccgaccgc ggccgccggc ggcgagctgc aggcggtggc
     2161 cgcggcggcg gcgagaaggg tgagcagggc acggcgcgag ggcatggcga tctccgtaga
     2221 cggggtgatg acccccgttg aacggccggc cggcgcgaac ggggtgaacc gtgagggcta
     2281 acaggtcctc aggcgggcga cttcggcacc gcccagcgct cctcgtgcga ccccggcgcg
     2341 ggcggccaga agcagcactt cgtccacgcc aggccgatcg cctcgtcgag gaccgacttc
     2401 gcgccgtcgc tcgtcgccca ccagcgctcg agcggatagc ggcgcggccg cgccgcgaag
     2461 acgccgacct cgacctcggg cccgaaggcg atccggtaga cgagccacga gcggcgcgcg
     2521 tggacaccgc ccgagaagag gtcgaccgcg tcgaccgcgc tgccctgctg gcgcagccag
     2581 tcgcggacga cgacggcgct gaggaaggtg cggtcctgcg ccgaccgggg cgcgggcacg
     2641 ggcaccaccg gaatccggtt cacgccatgg cggcgcaggt agtcggcggc gcgctccgcg
     2701 taagtcggcc aaggctggcc ctcgcgccag ctctcgatcg ggctcccgga cgtgacgacg
     2761 cgttcgtagc ggccgcgcgc gacgacggcg atcgcatcgt cgagcccgtc ctcgtcgagc
     2821 cagccttcga cgatcagcgt cgacgcgccg cgcccgtcgc gcccgattgc ggggtcggtc
     2881 ggcgcgagga agctgccgag ttggcgcagc gcgatgacag ccgctgcggc ggcgaatgcg
     2941 atcagcagca gcgtgcccca ccacgtcggc aaccagatct ggcggcggcg gaacaggctc
     3001 ggcacgggcg ggatctcctt gcgcgtcgat ggccgcggcg aagcgcgtcg actttgtcac
     3061 gactgcgatc gggcctcgtg gcgcactgtc gtttccgagg attgtcaccg tgatcggaac
     3121 cacgtccacg gatgcgattc ggcgaacggt cgtgcttttg cgcccggcgg ttccgacaat
     3181 cccgccatca gggctcagac cgcgcacaac gcgtcggcga gatcccggca aggaatcgaa
     3241 atgttcagca tccgatcgtt catgcgacag agcgccaccg ccgcgctggt gttagcagcc
     3301 gccgctgccg gccccgtgca cgcggtcaac atcgagaccg gctcgtatgc gaattccggc
     3361 atcggctccg agttcgcttc gcccttcgac aacttcatca tcaccggcga cacgatcacg
     3421 gtcgcgctgt cgacgacgcc ggtcgccgtc tcgctgggca cgttctcgtt cgaagtcggc
     3481 gcgaactgct ggagctgcac gctgacgccg tcgttcgacg cgctgatcga cgtcaccgtc
     3541 gacggcatca cgcaccagat cgacctgcct tactcctggt actcgtcggg cccgagcgac
     3601 ttcctcagct tctcgacgcc ggcgccggtg gtgttcgatt tcgacagcct gggcttggtg
     3661 acgatcgcga tcgactcgat cggcgtcctg tcgagctcgg gcagcacgat ctacggcaac
     3721 gtcaacgcca cggtgtgggc gacccccgtc cccgagcccg ccagctacgc gatgatgctc
     3781 gccggcttcg gcgtgatggc gttcgtcgcg cgccggcgcc agcgctagtc gcgactcgag
     3841 gggtcgtcgg ctcgctgacc gcctgccgcg gacgcggcag cccgttcctc gagaacccgt
     3901 cgcacccgta gaggccgagg ccccgatgaa ggccatgctc tacagtggcc catggctttc
     3961 ggtccagccg ctcccgcgct aggcgcggca ctcctgttcg gcgcgagcac accgctcgcc
     4021 aagctactcg tcggtgaggt gccgccgctc ttgctggcgg gtttgctcta cctgggcagc
     4081 gggctcggcc tgggagctct cctcctgatc cgcacgatcg ccgcgaaagc gaccgaagac
     4141 gaggtcgcgc gcctgacgat tccgcgccgg gatgtgggct ggctgctcgg cgccatcgtc
     4201 gccggcggga tggcagggcc ggcgctgctg atggcaggac tggcacgaac cagcgcggca
     4261 tcggcgtcgt tgctgttgaa catcgagggt gtcgcgacgg ctgccatcgc ctggctcgtc
     4321 ttcaaggaaa acaccgaccg ccggatcgtg ctcggcatgg cggccatcgt gacgggcggg
     4381 gccctcctcg cctggcaacc gggcagctgg gcgctgtcca cgggcgcgtt gctcgtggtc
     4441 ggcgcctgtt tgtgctgggc catcgacaac aacctgaccc gcaaggtgtc gaccaacgac
     4501 gccatgctga tcgccggtat caagggcgtg gtggcgggca cctgcaacac ggcgctcgcc
     4561 gtcgccggcg gtgcgcactt tccggcactg ccactcgtcg gctggtcgct gctggtgggc
     4621 ctcgtgggat acggggtcag cctgatgctg ttcgtggtgg cgctgcgcac cctcggcacg
     4681 gccaggacag gagcgtactt ctccatcgca ccgctgttcg gcgtggcgct cgctctcttc
     4741 ttgtggcccg cgcttccgtc ggcaacgttc tgggtctccg cagcgctcat gggcatgggc
     4801 ctctggctgc acctgacgga gcgtcacctc cacgcccacg aacacatcgc gatggagcac
     4861 gaccatccgc acgcgcacga ccgtcatcac cagcacggac acgagttccc gtgggacggc
     4921 ggagagcctc atgtccatcc gcatgcgcac gtggccatga cgcacgagca cgtgcactac
     4981 cccgacatcc accatcgaca cgggcactag ccgacttcag ggcctaggaa ggccactgag
     5041 cggatacaac caattccgac cctgggagca cgtcacttga acacgaaact cgtcctgaac
     5101 gccgcggcgc tcggcctcgc catcgtcgcg ggctccgtgg gagcccatgg agatgaaagg
     5161 ccgcgcgtct tcgacgccag caaagtggaa gacactgcct tcggccgcga gggaaacccg
     5221 aaggcggtga cccgaaccat caaggtcgag atggccgaca acatgcgatt cacgccggcc
     5281 aacgtcaccg tcaagcgcgg cgaaaccatc aagttcgtcg ttcacaacgg cggcaagttg
     5341 ccgcacgaga tggtgctcgg cacaaagcag gccatcaagg agcacgccga gctgatgaag
     5401 aagtttcctg agatggaaca cgcagacgcg aacatggcgc acgtgcagcc cggcaaggtc
     5461 ggtaagatcg tttggcagtt cgcaaagcca ggggagttcg agttcgcctg cctgcagccg
     5521 ggtcacttcg aagccggcat ggttggcaag gtgaccgtga aatgaaagca ctgcatctat
     5581 tcgcagtcgc gatgctgacg atttcggctg tggctcattc gcagcaggcg acgcgatccg
     5641 cttcgactcc gagtgcgatc gcctcggccg ccgcttcgat gaccgaaggt gaagttcgca
     5701 aggtcgacaa ggaagcgggg aaggtgacgc tgcgtcacgg cccaatcgac aacctcggca
     5761 tgcctgccat gacgatggtc tttcgggtcg ccgacccgaa gatgctcgac caagtgaagg
     5821 agggtgagag ggtgcggttc tcagccgagc gtctgaatgg tgcgattacg ctgaccagga
     5881 tcgaagcggc gaagtaagcc ggttgcctct agccagcccg gtttgagcga ggcctgaaat
     5941 gtgaatctca gtcttcgtca acgcttctcc ttttttcatt tgaagtaacc cggttggcgg
     6001 tcgcagtgcc tcccaggctg gcgcagaccc ggcgcaggcg gcgttcggcc tcgtccgcta
     6061 ccgaatgaat ctcgggcttg ccgacgacgc tgaccatgat ctgcggatcg aggaagccga
     6121 ccacgaaacg ccccagcgcg tcttcgcgca cgatcacgtt gcacggaagc agcaacccga
     6181 tgtcgggctc ggaccgcaga gcctgatgtg cgagtggcgg gttgcaggca ccgaggatgc
     6241 ggtagggcgg catctccacc cccagcttct ctttcatcgc ttgctgcacg tcgatgtcgc
     6301 tcagcacgcc gaagccctcg gctttcagcg cgtcgatggt cttgagaact gcttgctcga
     6361 aggatgattg tcggaacccg ggggccgtgc ggtttgatct tgcacaagag tgctgtgcac
     6421 gctcgctgcg accccgctgc caactcgcgg cccactgtcg tgccgtcgcc atcggtgatc
     6481 gcctgcgacg tcacgcgctg cgcgtctggc cggacggcgc agccgctcac ggtctgcaac
     6541 agggtcgaca cgacggccac cccagcgatc gacgccctcg aggagccagt caggagccac
     6601 agcgtcacga ttgcgctcta acgggtcgat gccaccccga cagggtcctc gcctgctgaa
     6661 tgcaccacgt tcgccggcgg cgcgggctcg ttgcgcggag tgcgccccag ctgccattgc
     6721 ttgaccagcg catagagcgc cggaatcacg caaagagtca gcaccgtcga cgagatcatt
     6781 ccgcccacca tcggcgcagc gatgcggctc atcacctcgg agcccgtgcc actgccccac
     6841 atgatcggca acagcccggc catgatcgcc accacggtca tcatcttcgg acgcacgcgt
     6901 tcgaccgccc cttccatcac ggcggcgtag agatcggcgg ggcggggcgg gcgaccctcc
     6961 gcgcggcaac gttcctgggc ttgttcccag gcgtggtcga gatagatcag catcacgacg
     7021 ccggtctcgg cagccacacc agccaacgca atgaaaccga ccgccacggc gatcgacagg
     7081 ttgtagccga gcaaccacat cagccacacg ccacccacca atgcgaacgg aaccgaaagc
     7141 atgacgatca aggtctcggt cattcgcctg aagttgaggt agagcagcag gaagatcgcc
     7201 agcaacgtca ccggaacgac gatcttcatc ttgtcggtcg ctcgctccat ggcttcgaac
     7261 tggccgctcc acgcgatgta gtagccggcc ggaaacttga cctgctcggc gacggccttg
     7321 cgcgcgtcgg ccacatacga gccgatgtcg cggccgcgga tgtcgacgaa gatgtaggcc
     7381 gacagcagcg cgttttcggt gcggatgcca ggggcgccgc gcgcgacccg caccttggcc
     7441 acttgaccca gtggcaccat cgccccgccc atgatcggca ccagcacctc gcgctcgatc
     7501 tgctcggggt tcgcgcgcag ctcgcgcggg tagcgaacgg tcacgccgaa gcgctcgcgg
     7561 ccttcgacgg tggtggtcac catgtcgccg ccgagcgcgg tgccgatcac ttcgagaagc
     7621 tcgccgaccg acaggccgta gcgggcaagc tgctcgcgat ccggctcgat gttgagatag
     7681 cttccgccgg tcagacgctc ggcgaacgcc gacgtcgttc ccggcacctt cttgacgacc
     7741 gcctcgatct ccttggcgag ccgttccatt tcgccgagat ccttgccgaa gaccttgatg
     7801 ccgatcggcg tgcggatgcc ggtcgacagc atgtcgatgc gcgccttgat cggcatcgtc
     7861 catgcgttgg atatgcccgg aaactgcagc gccttgtcca gctctccgat cagcttgtcg
     7921 gtggtcatgc ccggccgcca ctccgcctga ggcttcaagt tgatcaccgt ctcgaacatc
     7981 tccgtcggcg cggggtcggt ggcggtgttg gcccttccgg ccttgccgaa gaccgagctc
     8041 acttccggga agctcttgat gatcttgtcc tgcgtctgca acacctcggc ggccttggtg
     8101 atcgacattc cgggcaggga ggcgggcatg tagagcagcg tgccctcgtt cagcgtcggc
     8161 atgaactcgg tgccgagccg catcgcaggc caggcgctca cgcccagcgc gaccagcgcg
     8221 aggccgatgg tcagcagctt ccagcgcatc acccaggcga tgacgggccg gtagatgaag
     8281 atcaggaacc g
//
LOCUS       DASVHM010000876         2118 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_280343, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000876 DASVHM010000000
VERSION     DASVHM010000876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280343"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..345
                     /locus_tag="VF308_16145"
     CDS             <1..345
                     /locus_tag="VF308_16145"
                     /inference="COORDINATES: protein motif:HMM:NF041043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BPSS1780 family membrane protein"
                     /protein_id="HEX7438237.1"
                     /translation="LLGLLSVPFWHAPALVHWGGQSAGKALFFSVVACWRNKGAFIVY
                     SATWFAVLILFALLANLLFAVFGRAQLVPFVAMPASLVFSTVFYASLYFTFADCFAPN
                     PGDAGDSHLPPP"
     gene            381..1127
                     /locus_tag="VF308_16150"
     CDS             381..1127
                     /locus_tag="VF308_16150"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008117126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX7438238.1"
                     /translation="MKVAMVTGAGSGIGRATALALLEAGYHVVLAGRRLEALQQTVQL
                     AGALGANALPVATDAGKADSVAALFKATRDTYGRLDLLFNNAGTGAPAVPLEDLSVAQ
                     WQAVVDINLTGVFLCTQQAFRLMKSQAPKGGRIINNGSISAHTPRPFSAPYTATKHAI
                     TGLTKATSLDGRIHGIACGQIDIGNAASEMTERMKGGVPQADGRLMPEPRMAVEHVAN
                     AVVHMAGLPLDANVLFMTIMATAMPFVGRG"
     gene            1219..1425
                     /locus_tag="VF308_16155"
     CDS             1219..1425
                     /locus_tag="VF308_16155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438239.1"
                     /translation="MIHVRLCLLLCVIGAALPGCAVVSVAGAAAGAAISVTGAVVSSG
                     VKVTGKVIEKTVDAVTPSGAARPH"
     gene            1472..>2118
                     /locus_tag="VF308_16160"
     CDS             1472..>2118
                     /locus_tag="VF308_16160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="HEX7438240.1"
                     /translation="MTNIHLIGGEKGGVGKSLVARIAAQYLIDREQPFIGFDTDRSHG
                     ALMRFYSAYASPVLVDNYEALDTIIEAAVDQPERRVLVDLAAQTHDPLVKWMDDAGVV
                     NLADELGLNLHYWHVMDTGKDSVDLLKKLLDRFGTGLRYVLVRNQIRGNDFSLLEQSG
                     EQARAEALGAKIVSIKRLHEGVINKIDSGSSSFWKAKPSDKDSTGLSLMDRQRVK"
BASE COUNT          345 a          748 c          669 g          356 t
ORIGIN      
        1 ctgctcggct tgttgtcggt gccgttctgg catgcgccgg cgctggtcca ctggggcggc
       61 cagagtgcgg gcaaggcgct cttcttcagc gtcgtcgcgt gctggcgcaa caagggcgcc
      121 ttcatcgtct acagcgcgac ctggtttgcg gtgctcatcc tgttcgccct gctcgcaaac
      181 ctgctgttcg ccgtgttcgg tcgagcccag ctcgtgccgt tcgtcgcgat gccggcttct
      241 ctcgtctttt cgacggtgtt ctacgcctcg ctctatttca cgttcgccga ttgcttcgcg
      301 ccgaacccgg gcgatgccgg cgacagtcac ttgccgccgc cctgatttcc cgacgcggcc
      361 caaccccgaa ggacacgccc atgaaagttg caatggtcac cggtgccggc agcggcatcg
      421 gccgcgccac cgccctcgcc ctgctcgagg ccggctacca cgtcgtgctg gccggccggc
      481 gcctcgaagc gctgcaacag accgtgcagc tggccggcgc cctcggcgcg aacgcgctcc
      541 ccgtcgcgac cgatgcgggc aaggccgatt cggtcgcggc gctgttcaag gcgacgcggg
      601 acacctacgg ccgcctcgac ctgctcttca acaacgccgg caccggggct ccggcggtgc
      661 ccctcgaaga cctgagcgtg gcgcagtggc aggcggtcgt cgacatcaac ctgaccgggg
      721 ttttcctgtg cacgcagcag gcgtttcgcc tgatgaagag ccaggccccg aagggcggcc
      781 gcatcatcaa caacggctcg atctcggcgc acacgccgcg tcctttcagc gcgccctaca
      841 ccgcgaccaa acacgcgatc accggcctca ccaaggcgac ttccctcgac ggccgcatcc
      901 acggcatcgc ctgcggccag atcgacatcg gcaatgcggc cagcgagatg accgagcgca
      961 tgaagggcgg cgtgccgcag gccgacggcc gcctgatgcc cgagccgcgc atggctgtcg
     1021 agcacgtcgc caacgccgtc gtgcacatgg ccggcctgcc gctcgacgcc aacgtgctgt
     1081 tcatgacgat catggcgacc gccatgccgt ttgtcggccg cggctgatgg gcgtgatgcc
     1141 ggtccgcgac gggcggcgca atcggccgac gctgggattc gggaacgttc gataatcgcc
     1201 gcgcatcggg agccttcctt gattcacgtc cgactctgcc tcttgctctg cgtgatcggc
     1261 gccgccctgc ccggctgcgc cgtggtcagc gtcgccggtg ccgcggccgg ggcggcgatc
     1321 tcggtcaccg gcgctgtcgt cagcagcggc gtgaaggtga ccggcaaggt gatcgaaaag
     1381 acggtcgatg ccgtcacgcc gagcggcgcc gcgagacccc attgatgtgc gtcaacgctt
     1441 cgcatcccaa cccgaaactg aaaccctttc gatgaccaac attcatttga tcggcggcga
     1501 aaaaggcggc gtcggcaagt cgctggtcgc gcgcatcgcg gcgcagtacc tgatcgaccg
     1561 ggaacagccc ttcatcggtt tcgacaccga tcgctcgcac ggcgcgctga tgcgcttcta
     1621 ttccgcctac gcctcgccgg tgctggtcga caattacgaa gcactcgaca cgatcatcga
     1681 ggccgccgtc gatcagccgg agcgccgcgt cctggtcgac ctcgccgcgc agacgcacga
     1741 tcccctcgtc aagtggatgg acgacgccgg tgtcgtcaac ctcgccgacg agctcggcct
     1801 caacctccat tactggcacg tcatggatac gggcaaggac tcggtcgacc tgctgaagaa
     1861 gctgctcgac cgcttcggca cgggcttgcg ctacgtgctc gtgcgcaacc agattcgcgg
     1921 caacgacttc agcctactcg agcaatccgg cgagcaggca cgggcggagg cgctcggcgc
     1981 gaagatcgtg tcgatcaagc gcctgcacga aggcgtgatc aacaagatcg acagcggcag
     2041 cagcagcttc tggaaggcca agccctccga caaggacagc accggcctca gcctgatgga
     2101 tcgccagcgc gtcaagat
//
LOCUS       DASVHM010000877         3218 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_715520, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000877 DASVHM010000000
VERSION     DASVHM010000877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3218
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_715520"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /gene="porA"
                     /locus_tag="VF308_16165"
     CDS             <1..283
                     /gene="porA"
                     /locus_tag="VF308_16165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate ferredoxin oxidoreductase"
                     /protein_id="HEX7438241.1"
                     /translation="GGVVSTDVRLALSGLHLRGYTVVAGLGGRAITKASLNRTLREAI
                     ADTLQPLTFMDLDWRIVNRQLEREAQVRRSGPIAENLLRDVGVVASKVA"
     gene            634..1560
                     /locus_tag="VF308_16170"
                     /pseudo
     CDS             634..1560
                     /locus_tag="VF308_16170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347177.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
     gene            1833..>3218
                     /locus_tag="VF308_16175"
     CDS             1833..>3218
                     /locus_tag="VF308_16175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HEX7438242.1"
                     /translation="MQKPFAITLDPGSSLANKTGSWRTERPIYVDRLPPCNNQCPAGE
                     DIQGWLFHAESGNYEAAWRHLTRDNPFPAIMGRVCYHSCESVCNRAHIDDAVGINSVE
                     RFLGDEALAKGWRFEWPHEETGRHVLVIGAGPSGMSAAYQLRRMGHAVTVMEAGPLMG
                     GMMRFGIPKYRLPRDILDAEMQRIVDMGVTVRLGTKVADLAQTTKDGGYDATFLAVGA
                     HIAKRAFIPAKDSARILDAVAVLRSMEGEDKPMLGRRVVVYGGGNTAIDVARTAKRLG
                     ATEAIIVYRRTREKMPAHDFEVEEALEEGVMVKWLSTIKQAGEGALTIEKMVLDEKGN
                     PQPTGELETLEADSVILALGQDVDLGLLHGVTGLEVSDGGVRVDPATMMTGRAGLFAG
                     GDMVPAERNVTVAIGHGKKAARHIDAWLRGTLLQPAPKHPVATFERINAWYYSDAPKT
                     VRPQLDLARRTS"
BASE COUNT          536 a         1158 c         1092 g          432 t
ORIGIN      
        1 cggcggggtg gtctccaccg acgtgcggct cgccctgtcg gggttgcacc tgcgcggcta
       61 cacggtggtg gccgggctcg gcggccgcgc gatcaccaag gcttcgctga accgcacgct
      121 gcgcgaagcc atcgccgaca cgctgcagcc gctcaccttc atggacctgg actggcgcat
      181 cgtcaaccgc cagctcgagc gcgaggcgca ggtgcgccgc agcggaccca tcgccgaaaa
      241 cctgctgcgc gatgtgggcg ttgtcgcatc gaaggtggcc tagatgcact tgcacgtggc
      301 atccgacgct cgagagcgca actgccttgg cttgcgtccg ctcgaaggcc gcgcctgcga
      361 tgcacagacg cgcgcgctgc aagcgagtgc cgcccgtgcg agggcgaatt ctgcgctcgc
      421 cccagggctc cgagcaccgc agggcagtcg gcccaacggg gcgaccgccg cagtgaagcg
      481 cagccggcca cccgcccacg gctttgcgcg ctcgatctca acgaagaacg gtgtgaaacc
      541 cgccgtgcca cttgcccgcg gccttgcgtg ctcggccgct ggcgcagcga ctaacgcgtc
      601 gcaatccatg cgatgcgggg tggagcaacc gacatgagca accaacccgt aaagttctat
      661 cagaccggca cgttcacggt cggcaatcgc ctgctcgcgc ccgaacagcg cagcgtgcag
      721 gcctccaccg aacgcagcaa ctcgctgaac tccgggcatc gcgcctgcca gggctgcggc
      781 gaggcgctcg gtgcgcgcta tgccgtcgac gccgcgatgc gcgccaccgg tggtcagctg
      841 atcgcggcca atgcgaccgg ctgcctcgag gtgttctcga ccccctaccc cgaaacctcg
      901 tggcagctgc cgtggatcca ctcgctgttc ggcaacgcgg ccgccgtcgg caccggcatc
      961 gcggcggcgc tgaaaatcaa ggcgcgcaag gcggggctgg cgcaaagtgc cgtgcgcgtg
     1021 atcgcgcagg gcggcgatgg cggaaccacc gacatcggct tcggctgcct gtcgggcatg
     1081 ttcgagcgca acgacgacgt gctctacatc tgctacgaca acgaggccta catgaacacc
     1141 ggcgtgcagc gcagctcggc gacgccgccg ggtgcgcgca cggcgacgac gatggcggtc
     1201 ggcgccgccc cgggcgccga tttcggcaag ggcaagaacc tgccactgat cgcgatggcg
     1261 cacgagatcc catacgtcgc gaccgcgacc gtggccgacc tgcacgacct cgaggccaag
     1321 gtcgagcgcg cgatgagcat ccgcggcgcg cgctatctgc acatcctggt tccctgcccg
     1381 ctcggctggg gctcggcgag ccaggacacg atcaagctgg cgcggctggc ccgcgagacg
     1441 ggaatctttc ccgtcttcga ggccgagcac ggcgagatca cccgcgtcac gaagatccgc
     1501 catcgcgttc cggtcgagga atatctgcgg ccgcagaggc gcttcgcgca tctcttcggc
     1561 ggcgcgacac ccgcatcacc gcccgcgagc gtgcggcctt cggcggcggg gcgccccgtc
     1621 ggccgcaccg gcggcatgga gaatcaggtc gaacccgaac cgcacggcgg cgcgatcgtc
     1681 gtcccgcccg ccggcagcat cgatgcatcg tctccgcagc cgccccgtgc gcgcggcgct
     1741 ggccagcccg agatgctggc gcgaatccag gccgacgccg accggaacat ccggcgcttc
     1801 aagctgctcg cagaggagag cgtcgcatga cgatgcaaaa gccgttcgcg atcaccctcg
     1861 acccgggctc ctcgctcgcc aacaagaccg gctcctggcg caccgagcgg ccgatctacg
     1921 tcgatcgcct tccgccctgc aacaaccagt gccccgccgg agaagacatc cagggctggc
     1981 tgttccacgc cgagagcggc aactacgaag ccgcctggcg ccatctcacg cgcgacaacc
     2041 cgttcccggc aatcatgggg cgcgtctgct accactcgtg cgaaagcgtg tgcaaccgcg
     2101 cgcacatcga cgacgcggtc ggcatcaatt cggtcgagcg cttcctcggc gacgaggcgc
     2161 tggccaaggg ctggcgcttc gagtggccgc acgaggagac gggtcgccac gtgctcgtca
     2221 tcggcgccgg gccctcgggc atgtcggcgg cctaccaact gcgccgcatg ggccacgcgg
     2281 tcacggtcat ggaggccggc ccgctgatgg gcggaatgat gcgcttcggc atcccgaagt
     2341 accggctgcc gcgcgacatc ctcgacgccg agatgcagcg aatcgtcgac atgggcgtga
     2401 cggtcaggct cggcaccaag gtcgccgatc tggcgcagac gacgaaggac ggcggctacg
     2461 acgcgacctt cctcgccgtc ggcgcgcaca tcgccaagcg cgccttcatc ccggccaagg
     2521 attcggcgcg aatcctcgac gcggtcgccg tgctgcgctc gatggagggc gaggacaagc
     2581 cgatgctggg ccggcgcgtc gtcgtctacg gcggcggcaa caccgcgatc gacgtcgccc
     2641 gcaccgccaa gcgcctcggc gcgacagagg cgatcatcgt ctaccggcgc acccgcgaga
     2701 agatgcccgc gcacgacttc gaggtcgagg aggcgctcga ggaaggcgtg atggtgaagt
     2761 ggctctcgac gatcaagcag gcgggcgaag gcgcgctgac gatcgagaag atggtgctcg
     2821 acgagaaggg caacccgcag ccgaccggcg agctcgagac gctcgaggcc gactcggtca
     2881 tcctcgccct cggccaggac gtcgacctgg gcctgcttca cggcgtcacc ggcctcgagg
     2941 tcagcgacgg cggcgtccgc gtcgatccgg cgacgatgat gaccggccgc gccgggctct
     3001 tcgccggcgg cgacatggtt ccggccgagc gcaacgtcac ggtcgcgatc ggccacggca
     3061 agaaggcggc gcgccacatc gacgcctggc tgcgcggcac gttgctgcag ccggcgccca
     3121 agcatccggt cgcgaccttc gaacgcatca acgcctggta ctacagcgat gcgccgaaga
     3181 ccgttcggcc gcagctcgac ctcgcgcgcc ggaccagc
//
LOCUS       DASVHM010000878         3590 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_352209, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000878 DASVHM010000000
VERSION     DASVHM010000878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3590
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352209"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..154
                     /locus_tag="VF308_16180"
     CDS             <1..154
                     /locus_tag="VF308_16180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEX7438243.1"
                     /translation="ALPGLPGPDAADALGLAICHAHAARSFAAIARATTLAPRTHAQY
                     KRGRSY"
     gene            254..2332
                     /locus_tag="VF308_16185"
     CDS             254..2332
                     /locus_tag="VF308_16185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007864827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HEX7438244.1"
                     /translation="MYALFEDAGKFLAGRVMTEAENSAQIELDSGKRVKVKAANVLLR
                     FERPAPADLIASAHTLAREIDLDLAWEFAPDTEFGFADLARDYFEASAGAEKQAAALF
                     RLFEAPHYFRRLGKGNFKKAPEEIVKAALLGIERKKQVVAQIDTWATELVGGTCPQPV
                     REQLYKILFKPDRNAPEYKAVVEAANRSHRAPLDLLTAAGAIDSPYQFHWRRFLFEQF
                     PKGTAFPALAVPRVKETLPIAALEAFSIDDSATTEIDDALSVRGLGTGSVTFGIHIAA
                     PGLAFAPETPVDKVARERLSTVYMPGHKLTMLPAAVVEAYTLTEGRTCPAVSLYVTID
                     EATLVVTARETRLERVPIAANLRHDKLDGVISEASLLGETPADYPFAAELAFAFRLAR
                     HLKAQREVVRGKPEVFNRPDYNFRLEDHDGGEPQGTERVAIGTRQRGSALDLIVAEAM
                     ILANSTWGGWLAECGVPGIYRSQASLAPGVKVRMGTKPAPHAGMGVAQYTWATSPLRR
                     YVDLVNQWQIIACARHGKTAALAAPFKPRDVQLFSIISAFDAGYAAYNGFQSGIERYW
                     TLLYLAQRNIEELAATVMKDGLVRADELPLVFRALGAEGLQRGARVRVRIGATDLLTL
                     DVHASVVARLDDEATRAVDARAEESADDATDEGAPQAGPLTLAIGTEAEPDAMADATL
                     AVLDDPVAAA"
     gene            2342..3196
                     /locus_tag="VF308_16190"
     CDS             2342..3196
                     /locus_tag="VF308_16190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEX7438245.1"
                     /translation="MLGKLSPLRGALIVSIGLHGALLAVRIVDPEGFNRIFQDTPLEV
                     ILVNSRSGEAPEKAQAIAQASLAGGGEAVAGRATSPLPPSALMEVGDANEDTRKQIEQ
                     LKETQAQLLTQVRRELALLPATDPLRDEGDPDERAQEERRRQLIQLLAEIEKRINEEN
                     VRPKKRYISPATREEVYAIYYDQLRRKIEDRGTRNFPENQGKKLYGELTMNVTVDAEG
                     RVVDTEVVRSSNSKVLDRRAVAIVVAAAPFGRFTPAMLRKADQLVITSRFKFTREDGF
                     ETTLGAAP"
     gene            3250..>3590
                     /locus_tag="VF308_16195"
     CDS             3250..>3590
                     /locus_tag="VF308_16195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015765791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISAzo13 family transposase"
                     /protein_id="HEX7438246.1"
                     /translation="MDIAQTIEAKYLALADRLDEATLRLWIATEARSIGRGGVSVVAK
                     AAGVSRTTVYAGLAELDRGTARGSEAPALDKRRVRAHGGGRKTLASADATLLRDLDAL
                     VEPTTRGDPQSA"
BASE COUNT          633 a         1253 c         1197 g          507 t
ORIGIN      
        1 cgcactgccc ggcctgcccg ggccggatgc cgccgatgcg ctcggcctgg cgatctgcca
       61 cgcccacgcg gcacggtcgt tcgcggccat cgcccgtgcc acgaccctcg cgccgcggac
      121 ccacgcccaa tacaaacgcg ggcgcagcta ctgagccccc ggccagggcg catccgcgcg
      181 ctccgtgacg aagcgccggg aaaaccatgg cgcgatggcg gccgtgtgaa tcggctcggc
      241 gacaatcgcc accatgtatg ccctgttcga agacgccgga aagtttctcg ccggacgcgt
      301 gatgaccgaa gccgagaact cagcccagat cgagctcgat tccggcaagc gcgtgaaggt
      361 gaaggcggcc aacgtgctgc tccggttcga gcggcccgca cccgccgacc tgatcgcgtc
      421 ggcccacacg ctcgcccggg agatcgacct cgacctcgcc tgggaattcg cacccgacac
      481 cgagttcggc ttcgccgatc tcgcgcgcga ctacttcgaa gcgagcgccg gtgccgagaa
      541 gcaggccgcc gcgctgtttc gcctgttcga ggcgccgcac tacttccggc gcctcggcaa
      601 gggcaatttc aagaaggcgc ccgaagagat cgtcaaggcg gccctcctcg gcatcgaacg
      661 caagaagcag gtcgtcgccc agatcgacac ctgggcgacc gagctcgtcg gcggaacgtg
      721 cccgcagccg gtgcgcgagc agctctacaa gatcctcttc aagccggatc gcaacgcgcc
      781 cgagtacaag gcggtggtcg aggccgcgaa ccgcagccac agggcgccgc tcgatttgct
      841 gaccgcggcg ggcgccatcg actcgccgta ccagttccac tggcgccgct tcctgttcga
      901 gcaattcccc aagggcacgg cgttcccggc gctggccgtg ccgcgggtga aggaaaccct
      961 gccgatcgca gcgctcgaag cgttctcgat cgacgactcg gccacgaccg agatcgacga
     1021 tgcgctctcg gtccggggcc tgggcaccgg cagcgtcacc ttcggcatcc acattgccgc
     1081 gccgggactc gcattcgctc ccgagacgcc cgtcgacaag gtcgcgcgcg agcgcctctc
     1141 gaccgtctac atgcccggcc acaaactcac catgctcccc gccgcagtgg tcgaggccta
     1201 cacgctgacc gaaggtcgca cctgcccggc ggtatcgctc tacgtgacga tcgacgaagc
     1261 gacgctcgtg gtcacggcac gcgaaacccg gctcgaacgc gttccgatcg ccgcgaacct
     1321 gcgccacgac aagctcgatg gcgtgatctc ggaagcttcg ctgctcggcg agacgccggc
     1381 cgactacccc ttcgccgccg aactggcgtt cgcattccgg cttgcccggc acctgaaggc
     1441 acaacgcgaa gtcgtgcgcg gcaagcccga ggtgttcaac cgccccgact acaacttccg
     1501 cctcgaagac cacgatggcg gcgaaccgca gggcaccgag cgggtcgcca tcggtacgcg
     1561 gcagcgcggc tcggcgctcg acctgatcgt cgccgaggcg atgatcctcg ccaacagcac
     1621 ctggggcggc tggctcgccg agtgcggggt accgggcatc taccgcagcc aggcgagcct
     1681 cgcaccgggg gtgaaggtgc gcatgggcac gaaaccggcg cctcatgccg ggatgggcgt
     1741 cgcgcagtac acctgggcga cttcgccgct gcgccgctat gtcgacctcg tcaaccagtg
     1801 gcagatcatc gcctgcgccc gccacggcaa gaccgccgcg ctggccgcgc cgttcaagcc
     1861 ccgggacgtg cagctcttct cgatcatctc ggccttcgat gccgggtacg ccgcctacaa
     1921 cgggttccag tccggcatcg agcgctactg gacgcttctt tatctcgccc agagaaacat
     1981 cgaggaactg gccgcgacgg tgatgaagga cggcctcgtg cgcgccgacg agttgccgct
     2041 ggtctttcgc gcgctcggcg ccgaggggct gcagcgcgga gcccgcgtgc gggtgcgcat
     2101 cggcgcgacc gacctgctca cgctcgacgt gcacgcgagc gtcgtcgcgc gcctcgacga
     2161 cgaggccacc cgcgccgtcg acgcgcgtgc ggaggagtcg gccgacgacg ccacggacga
     2221 aggcgccccg caggccggtc cgttgacgct cgcgatcggc accgaggccg agccagacgc
     2281 gatggccgat gcgacactgg ccgtcctcga cgaccccgtg gccgccgcct gaaggagccg
     2341 gatgctcggc aagctgtcac ccttgcgcgg agcgctgatc gtgtcgatcg gactccatgg
     2401 ggcgctgctg gcggtgcgca tcgtggaccc cgagggattc aaccgcatct tccaggacac
     2461 gccgctcgag gtgatcctcg tcaactcgcg ctccggcgag gcgcccgaga aggcccaggc
     2521 gattgcgcag gcgagcctgg cagggggcgg cgaagccgtg gcggggcgtg cgacgtcacc
     2581 gttgccgccg tcggcgctga tggaggtcgg cgacgccaac gaagacacgc gcaagcagat
     2641 cgaacagttg aaggagaccc aggcccagtt gctgacccag gtgcggcgcg aactcgcgct
     2701 cctgccggcg accgacccgc tgcgcgatga gggcgacccc gacgagcgcg cccaggaaga
     2761 gcggcggcgc cagctgatcc agctgctcgc cgaaatcgag aagcgcatca acgaggagaa
     2821 cgtgcgcccg aagaagcgct acatcagccc ggcgacgcgc gaagaggtct atgcgatcta
     2881 ttacgaccag ctgcgcagga agatcgaaga ccgcggcacg cgcaacttcc ccgagaacca
     2941 gggcaagaag ctgtacggcg aactgaccat gaacgtcacg gtggatgccg agggaagggt
     3001 cgtcgatacc gaggtcgtgc gctcctcgaa ctcgaaggtg ctcgaccgcc gcgccgtcgc
     3061 gatcgtcgtc gccgcggcgc cgttcggacg cttcaccccg gccatgctcc gcaaggccga
     3121 tcagctcgtg atcacctcgc gcttcaagtt cacgcgcgag gacggcttcg aaacgacgtt
     3181 gggtgcggcc ccttaggaac ttagcaataa taacttgaac actgtagttg cgcgacctat
     3241 gatcgtgcgg tggacatagc gcagacgata gaagccaagt accttgccct ggcggatcgg
     3301 ctcgacgagg cgactctgag gctgtggata gcgactgagg cgcgcagtat cggacgtggc
     3361 ggcgtcagcg tggtggccaa ggccgctggg gtgtcccgca cgaccgtgta tgccgggcta
     3421 gccgaacttg atcgaggtac ggcgcgcggc agtgaagcac cggcactcga caagcggcgc
     3481 gttcgtgcgc acgggggtgg tcgcaagacg cttgcaagcg cagacgctac gctgttgcga
     3541 gacctggatg cattggtcga gccgaccaca aggggcgatc cgcaatcggc
//
LOCUS       DASVHM010000879         1980 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_280597, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000879 DASVHM010000000
VERSION     DASVHM010000879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280597"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1192
                     /locus_tag="VF308_16200"
     CDS             <1..1192
                     /locus_tag="VF308_16200"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HEX7438247.1"
                     /translation="LRLVLELDGEVIQRADPHIGLLHRATEKLAETRTYIQSLPYMDR
                     LDYVSMMCNEHAYCLAIEKLIGVDVPIRAQYIRVMFAEITRLMNHLMWLGAHGLDCGA
                     MNIFIYCFREREDLFDMYEAASGARMHAAYFRPGGVYRDLPDSMPQYRESKIRGAKAT
                     GEMNANRSGSLLDFIDDFSKRFPEKVDEYETLLTDNRIWKQRTVGIGVVTPERAKNLG
                     FTGPMLRGSGILWDLRKHQPYEVYEQMDFDIPLGVNGDTYDRYLVRVEEMRQANRIIR
                     QCVEWLKANPGPVITSNHKVAPPSRLEMKSGMEDLIHHFKLYSEGIRVPEGEAYAAVE
                     HPKGEFGIYIVSDGANKPYRLKIRAPGFPHLAALDELSRGHMIADAVAVIGTMDIVFG
                     EIDR"
     gene            1216..1713
                     /locus_tag="VF308_16205"
     CDS             1216..1713
                     /locus_tag="VF308_16205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019428574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HEX7438248.1"
                     /translation="MLSEAAARAFAREIAKYPPEQKASAVIACLAVLQEEHGFVSQES
                     EQLVAEALGMPVIAVHEVTTFYNMFNQVPVGRVKLNVCTNLPCQLRGGQHALEHLCRS
                     LGIEEGGTTADRGFTVQKAECLGACADAPVLLVNDRQMVSFMSDARIDELVAALSDSN
                     PASTA"
     gene            1710..>1980
                     /locus_tag="VF308_16210"
     CDS             1710..>1980
                     /locus_tag="VF308_16210"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019577571.1"
                     /note="part of NADH-ubiquinone oxidoreductase complex I;
                     shuttles electrons from NADH, via FMN and iron-sulfur
                     (Fe-S) centers, to quinones in the respiratory chain; NuoF
                     is part of the soluble NADH dehydrogenase fragment, which
                     represents the electron input part of NADH dehydrogenase;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit F"
                     /protein_id="HEX7438249.1"
                     /translation="MNARVDLSKFQATGQETCFHGRHIQPQIYAGLDGTNWRLKDYEA
                     RGGYQAWRKILAQGEGRGMTPEQVIAEVKASSLRGRGGAGFPTGLK"
BASE COUNT          362 a          680 c          641 g          297 t
ORIGIN      
        1 gctgcgcctg gtgctcgagc tcgacggcga ggtgatccag cgcgccgacc cgcacatcgg
       61 tctgctccac cgcgccaccg aaaagctcgc cgagacgcgc acctacatcc agtcgctgcc
      121 ctacatggac cggctcgact acgtctcgat gatgtgcaac gagcacgcct actgcctggc
      181 gatcgagaag ctcatcggtg tcgacgtgcc gatccgtgcc cagtacatcc gggtcatgtt
      241 cgcagagatc acgcgcctca tgaaccacct gatgtggctc ggcgcgcatg gcctcgactg
      301 cggcgcgatg aacatcttca tctattgctt tcgcgagcgc gaggacctgt tcgacatgta
      361 cgaggcggcg tcgggcgcgc gcatgcacgc ggcgtacttc cggccggggg gcgtctaccg
      421 cgacctgccg gactcgatgc cgcagtaccg cgagtcgaag atccgcggcg ccaaggcgac
      481 cggcgagatg aacgcgaacc gctccggctc gctgctcgac ttcatcgacg acttctcgaa
      541 gcgcttcccg gagaaggtcg acgagtacga gacgctgctc accgacaacc ggatctggaa
      601 gcagcgcacg gtcggcatcg gcgtcgtcac tccagagcgc gccaagaacc tcggcttcac
      661 cgggccgatg ctgcgcggct cgggcatcct ctgggacctg cgcaagcacc agccgtacga
      721 ggtctacgag cagatggatt tcgacatccc gctcggcgtc aatggcgaca cctacgaccg
      781 ctatctcgtc cgcgtcgagg agatgcgcca ggcgaaccgg atcatccgcc agtgcgtcga
      841 gtggctgaag gccaatcccg gcccggtgat cacgagcaac cacaaggtgg cgccgccgtc
      901 gcggctcgag atgaagagcg gcatggaaga cctgatccat cacttcaagc tctacagcga
      961 aggaatccgc gttcccgagg gcgaggcgta tgcggcggtc gagcacccga agggcgagtt
     1021 cggcatctac atcgtcagcg acggcgccaa caagccgtac cgcctcaaga tccgcgcgcc
     1081 tggctttccg catctggccg cgctcgacga gctgtcgcgc ggccacatga tcgccgacgc
     1141 cgtcgccgtg atcggcacga tggacatcgt cttcggggag atcgaccggt gaacgccccg
     1201 atgcgcgccc cggcgatgct ctccgaggcg gcagcgcgcg cgttcgcgcg cgagatcgcc
     1261 aagtacccgc ccgagcagaa agcgtcggcg gtgatcgcct gcctcgccgt cctgcaggaa
     1321 gagcacggct tcgtctcgca ggagagcgag cagctcgtcg ccgaggcgct cggcatgccg
     1381 gtgatcgccg tgcacgaggt gacgaccttc tacaacatgt tcaaccaggt gccggtcggg
     1441 cgcgtcaagc tcaacgtctg caccaacctg ccatgccagc tgcgcggcgg tcagcatgcg
     1501 ctcgagcacc tgtgccgatc gctcggcatc gaagagggcg gaacgaccgc cgaccgcgga
     1561 ttcacggtgc agaaggccga gtgcctcggc gcctgcgccg acgcgccggt gctcctcgtc
     1621 aacgaccgcc agatggtgag cttcatgagc gacgcgcgga tcgacgagct cgtcgccgcg
     1681 cttagcgatt ccaatccggc aagcaccgca tgaacgcccg agtcgacctt tcgaagtttc
     1741 aggccacggg ccaggagacg tgcttccacg gccgccacat ccagccgcag atctacgccg
     1801 gcctcgacgg cacgaactgg cgcctgaagg actacgaagc gcgcggcggc taccaggcct
     1861 ggcgaaagat ccttgcccag ggcgagggca gggggatgac gcccgagcag gtgatcgccg
     1921 aggtcaaggc atcgagcctg cgcggccgcg gcggcgccgg ctttccgacc ggcctcaagt
//
LOCUS       DASVHM010000880         2847 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_426747, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000880 DASVHM010000000
VERSION     DASVHM010000880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2847
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426747"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="VF308_16215"
     CDS             complement(<1..280)
                     /locus_tag="VF308_16215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017233211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7438250.1"
                     /translation="MTAVLATATATATAAADVGARVPPAGAWRPVWRKLRRRRGAMIG
                     LVVVVGFVVAALFAPWLAPFDPIETSWSAIRQAPSAAHWFGTDDIGRDV"
     gene            complement(289..1230)
                     /locus_tag="VF308_16220"
     CDS             complement(289..1230)
                     /locus_tag="VF308_16220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007874858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7438251.1"
                     /translation="MIEFLVKRIATILPTLVFVSMLIFGLQQLLPGDPAVILAGEERD
                     ASVVAYLHQKLHLDDPLPVRYGYWVGGVLRGDLGESVRTQQPVLDLIVQKLPVTIELA
                     VLAMAIALVIGIPAGIISAVGRGTAWDYAANVFALWGLSTPNFWLGILMILLFSVQLG
                     WLPASGYVSPFENLRENLAAMIMPAFVLGNAIAAVLMRHTRSAMLQVLNADYVRTARA
                     KGLSERVVVLKHSLRNALTPIITLGALEFGTLLSGAVLTEQVFTIPGFGKLIVDSVFN
                     RDYAVVQGVVLVTASAYIALNLLADIAYFVANPKLRG"
     gene            complement(1390..>2847)
                     /locus_tag="VF308_16225"
     CDS             complement(1390..>2847)
                     /locus_tag="VF308_16225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007874860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7438252.1"
                     /translation="ATQSQTLRVGLAEDPDVLDPTLARTFVGRIVFAALCDKLFDIDE
                     KLQIVPQLATGYEWSADSKTLTIKLRTDVTFHDGEKLDAAAVKFNIERHKTMAGSNRS
                     GELRPVASVDVVDPATVKLNLSAPFTPILAALADRAGMMVSPKAAKAEGANFGAKPVC
                     SGPFKFSERVAQDRIVLERHPAYWNKADVHFDKVVYTPIVDATVRLANLRSGQFDVIE
                     RVAPSDIEGLKKDKNLKVARITEIGYQGITINVGKSEQAQKNPLGKDAKVREAFELAL
                     DRAGIVQVVMDNEATIGNQWVAPSNSFYAKNVPVPKRDIARAKALLKEAGVPNPSFTL
                     VTPTTSDAQRLALVVQAMTREAGFNVKIQSTEFATSLNMADKGDFEAYVLAWSGRADP
                     DGNLYSFDACKQPLNYAGYCVAEIDELLNASRSQRDPAERKKTFEQIASRVLKDRPII
                     YLYHRNWLWAHSAKLSGLRSVPDGLMRVTGLKMAP"
BASE COUNT          441 a          940 c          996 g          470 t
ORIGIN      
        1 ggacgtcgcg gccgatgtcg tcggtgccga accagtgcgc cgccgacggc gcctggcgga
       61 tcgcgctcca gctcgtctcg atcggatcga acggcgcgag ccagggcgcg aacagcgccg
      121 cgacgacgaa cccgacaacg acgacgaggc cgatcatcgc gccgcgccgg cgcctgagct
      181 ttctccacac cggccgccac gcgccggccg gcggcacacg cgcgccgaca tcggcggcgg
      241 cggtcgcggt cgcggtggcg gtggcgagaa cggcagtcat ggtcgtgctc agccgcgcag
      301 cttcgggttg gccacgaagt aggcgatgtc ggcgagcagg ttgagggcga tgtacgcgct
      361 cgccgtgacg aggacgacgc cctgaacgac ggcgtagtcg cggttgaaga ccgagtcgac
      421 gatgagcttg ccgaagcccg ggatcgtgaa tacctgctcg gtgaggacgg cgcccgagag
      481 cagcgtgccg aactcgagcg cgccgagcgt gatgatcggc gtcagcgcgt tgcgcaggct
      541 gtgtttcagc acgacgacgc gctcgctcag ccccttggcg cgcgcggtgc gaacgtagtc
      601 ggcgttgagc acctgcagca tcgcgctccg cgtgtggcgc atcagcacgg cggcgatcgc
      661 gttgccgagc acgaacgccg gcatgatcat cgccgccagg ttctcgcgca ggttctcgaa
      721 cgggctgacg tagcccgacg ccggcagcca gccgagttgc accgagaaga gcaggatcat
      781 caggatgccg agccagaagt tcggcgtcga caggccccag agcgcgaaca cgttggccgc
      841 gtagtcccag gccgtgccgc gcccgaccgc ggagatgatg ccggccggga tgccgatcac
      901 gagcgcgatc gccatcgcca gcaccgcgag ctcgatcgtc accggcagct tctggacgat
      961 gaggtcgagc accggctgct gcgtccgcac cgattcgccg aggtcgccgc gcagcacgcc
     1021 gccgacccag tagccgtagc gcaccggcag cggatcgtcg aggtgcagct tctggtgcag
     1081 gtaggcgacg acgctcgcat cgcgctcctc gcccgccagg atcaccgccg gatcgccggg
     1141 cagcagctgc tgcaggccga agatcagcat cgagacgaag acgagcgtcg gcaagatcgt
     1201 cgcgatgcgc ttgacgagga actcgatcat gttcggctga tcgcaggtgg tgacttggag
     1261 tcgttgagtt cgccgtgggc gtggagcctg acgcgtgtac cgagcgcgcc aagccgcggg
     1321 cgggtggccg gtggttgctt cactgcggcg gtcaccgcaa ggtattggta ctcgctgacg
     1381 aacacgaact cacggcgcca tcttcaagcc cgtcacccgc atcaacccgt ccggaacgct
     1441 gcgcaacccg ctcagcttcg cgctgtgcgc ccacagccag ttgcggtgat agaggtagat
     1501 gatcggccga tccttgagaa cgcgcgaagc gatttgctcg aaggtcttct tgcgctcggc
     1561 cggatcacgc tggctgcgcg aggcgttgag cagctcgtcg atctcggcga cgcagtagcc
     1621 ggcgtagttg agcggctgct tgcaggcgtc gaagctgtag agattgccgt cggggtcggc
     1681 gcggccgctc caggcgagga cgtaggcctc gaagtcgccc ttgtcggcca tgttgagcga
     1741 ggtcgcgaac tcggtcgact ggatcttgac gttgaagccc gcctcgcgcg tcatcgcctg
     1801 caccacgagc gccaggcgct gcgcgtcgga cgtggtcggc gtgaccagcg tgaagctcgg
     1861 gttcggcacg ccggcttcct tgagcagcgc cttggcgcgg gcgatgtcgc gcttgggcac
     1921 cggaacgttc ttcgcgtaga acgagttgct cggcgcgacc cactggttgc cgatcgtcgc
     1981 ctcgttgtcc atcaccacct ggacgatgcc ggcgcggtcg agcgcgagct cgaacgcctc
     2041 gcgcaccttg gcgtccttgc cgagcgggtt cttctgcgcc tgctcgctct ttcccacgtt
     2101 gatcgtgatg ccttgatagc cgatctcggt gatgcgcgcg accttcaggt tcttgtcttt
     2161 cttcaggccc tcgatgtccg acggcgcgac gcgctcgatg acgtcgaact ggcccgagcg
     2221 caggttcgcc aggcgcaccg tcgcgtcgac gatcggcgtg tagacgacct tgtcgaagtg
     2281 gacgtcggcc ttgttccagt acgccggatg ccgctcgagg acgatgcggt cctgggcgac
     2341 ccgctcgctg aacttgaacg ggcccgagca caccggcttg gcgccgaagt tggcaccctc
     2401 ggccttcgcc gccttgggcg agaccatcat gccggcgcga tcggcgagcg cggccaggat
     2461 cggcgtgaac ggcgccgaca ggttgagctt gaccgtcgcc gggtcgacga cgtcgacgct
     2521 cgccaccggc cgcagctcgc cgctccggtt cgagccggcc atcgtcttgt ggcgctcgat
     2581 gttgaacttc accgccgccg cgtcgagctt ctcgccgtcg tggaaggtga cgtcggtgcg
     2641 cagcttgatc gtcagcgtct tgctgtcggc cgaccactcg tagccggtcg cgagctgcgg
     2701 cacgatctgc agcttctcgt cgatgtcgaa cagcttgtcg cagagcgccg cgaagacgat
     2761 ccggccgacg aaggtgcgcg ccagcgtcgg atcgagcacg tcggggtcct cggcgaggcc
     2821 gacgcgcaag gtctgcgact gggtcgc
//
LOCUS       DASVHM010000881         2372 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1005993, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000881 DASVHM010000000
VERSION     DASVHM010000881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1005993"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /gene="ribB"
                     /locus_tag="VF308_16230"
     CDS             complement(<1..564)
                     /gene="ribB"
                     /locus_tag="VF308_16230"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HEX7438253.1"
                     /translation="MAIAPVPELVAELAAGRMVILVDEEDRENEGDLVIAAEHVSAAA
                     INFMARFGRGLICLALTRERCERLHLPPMTRRNGTRHGTAFTVSIEATQGVTTGISAA
                     DRARTVQAAVARDATANDLVQPGHIFPLQAQDGGVLMRAGHTEAGCDLTAMAGLTPAA
                     VICEVMNEDGTMARLPDLIEFAREHHLK"
     gene            complement(623..1252)
                     /locus_tag="VF308_16235"
     CDS             complement(623..1252)
                     /locus_tag="VF308_16235"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019428277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEX7438254.1"
                     /translation="MFTGIVTGLGRILEVRSLGAASEHGKRLTIEAPAAYLDDVQPGD
                     SIALNGACMTVTSLDRGAGRFHVDISAESLARTAALGAPGPINLEKALRAHDRLGGHL
                     VSGHVDGIGLVTHLGEVGESWELRIKAPGELARFLAYKGSITVNGVSLTVNRIDDLAD
                     GCEFSINLIPHTMQHTTLGTLAVGGRVNLEIDLIARYVERMLTGALPRA"
     gene            complement(1291..2367)
                     /gene="ribD"
                     /locus_tag="VF308_16240"
     CDS             complement(1291..2367)
                     /gene="ribD"
                     /locus_tag="VF308_16240"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011483796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEX7438255.1"
                     /translation="MRLAALAIGGCEPNPRVGCVIVAADGRVIGRGHTQQSGSAHAEV
                     MALRDAAVHGASVHGATVHVTLEPCSHHGRTPPCSEALIAAGVGRVVMAIEDPNPLVS
                     GAGAAQLRAAGIAVEVGPRADEARELNIGFFSRMQRGRPWVRLKAAVSLDGRTALPNG
                     ASQWITGAEARTDGHAFRKRAGAILTGVGTVLDDDPRLDVRLVQTTSQPLRVIVDSRL
                     DMPLTARVLQAPGRALVYAAAPADERRRALERQGVEVALLPSASGKVDLPAMLADLAA
                     NRDINELHVEAGHKLNGSFVREGLVDEFLVYVAPKLIGTGRELALFGPLARLDDAVRL
                     RFTSVTPIGDDLRILARPANPKTR"
BASE COUNT          314 a          801 c          879 g          378 t
ORIGIN      
        1 cttgagatgg tgctcgcgcg cgaactcgat cagatcgggc aggcgcgcca tcgtgccatc
       61 ctcgttcatc acttcgcaga tcacggccgc gggcgtgagc ccggccatcg cggtgagatc
      121 gcaaccggct tcggtatgtc cggcgcgcat cagcacgccg ccgtcctgcg cctgcagcgg
      181 gaagatgtgg cccggctgca ccaggtcgtt ggcggtcgcg tcgcgcgcga cggcggcctg
      241 caccgtgcgc gcccggtcgg cggccgagat gccggtggtg acgccttgcg tggcctcgat
      301 cgagaccgtg aacgcggtcc cgtgccgggt gccgttgcgc ctcgtcatcg gcggcaggtg
      361 aagccgctcg cagcgctcgc gggtcagcgc gaggcagatc aggccgcggc cgaagcgcgc
      421 catgaagttg atcgccgccg cgctcacatg ttcggcggcg atgacgaggt cgccttcgtt
      481 ttcgcgatcc tcctcgtcga cgaggatcac catgcggccg gcggccagct cggcgacgag
      541 ttcgggaacg ggtgcgatgg ccatgctgaa ttgtaggtgt cgacagtagg cgcggcctgc
      601 gcgccccctt cgcggcccgc ggtcaggccc gcggcagcgc gccggtgagc atgcgctcga
      661 cgtagcgcgc aattaggtcg atctcgagat tgacgcgccc gccgacggcc agggtgccca
      721 gcgtggtgtg ctgcatcgtg tgcggaatca ggttgatgct gaactcgcac ccgtccgcaa
      781 gatcgtcgat gcggttgacc gtgaggctca cgccgttgac cgtgatcgag cccttgtagg
      841 ccaggaagcg cgccagctcc ccgggcgcct tgatgcgcaa ctcccaggat tcgccgactt
      901 cgccgaggtg ggtgaccagg ccgatgccgt cgacatggcc gctcaccagg tggccgccca
      961 ggcggtcgtg cgcacgcagg gccttctcca ggttgatggg ccccggcgcg ccgagcgcgg
     1021 cggtgcgtgc gaggctttcg gccgagatgt cgacgtggaa gcggccggcg ccccgatcga
     1081 gcgaggtgac ggtcatgcag gcgccgttga gcgcgatgct gtcgcccggc tgcacgtcgt
     1141 cgagataagc cgcgggcgct tcgatcgtga gccgcttgcc gtgctcgctc gcggcgccga
     1201 gcgagcgcac ctcgaggatc cggccgaggc cggtgacgat gccggtgaac atgccgcgat
     1261 tgtcgctcgg gtcgcgcctc gcctcgtgcg tcagcgggtc ttggggttgg ccggccgcgc
     1321 gaggatgcgc aggtcgtcgc cgattggcgt gacgctcgtg aagcgcagcc tgaccgcgtc
     1381 gtcgaggcgg gcgagcggcc cgaagagcgc cagttcgcgg ccggtcccga tcaatttcgg
     1441 tgcgacgtag acgaggaatt catcgaccag cccttcccgc acgaacgatc cgttgagctt
     1501 gtggccggct tcgacgtgga gttcgttgat gtcgcgattc gcggccaggt cggccagcat
     1561 cgccgggagg tcgaccttgc cgctcgccga cggtagcagc gcaacctcga cgccttgtcg
     1621 ctcgagcgcg cggcgtcgtt cgtcggcggg tgcggcggca tagaccaggg cgcggccggg
     1681 cgcctgcagc acgcgtgcgg tcagcggcat gtcgaggcgc gaatcgacga tcacgcgcag
     1741 tggctggctc gtggtctgca caaggcgcac atcgagccgg gggtcgtcgt cgagcacggt
     1801 gccgacgccg gtcaggatcg cccccgcgcg cttgcgaaac gcgtgcccgt cggtgcgcgc
     1861 ttcggcgccg gtgatccact ggctggcacc gtttggcagg gcggtgcggc cgtccagcga
     1921 gacggccgcc ttcagccgca cccagggccg gccgcgttgc atgcgcgaga agaaaccgat
     1981 gttgagttcg cgggcttcgt cggcccgcgg tccgacttcg acggcgatgc cggccgcgcg
     2041 caactgcgcc gcaccggcgc ctgagacgag cgggttcggg tcttcgatcg ccattacgac
     2101 ccggcctacg ccggccgcga tcagcgcttc gctgcacggc ggtgtgcggc catggtgcga
     2161 gcacggctcg agcgtcacgt ggacggtggc gccgtgcacg cttgcgccgt gcacggcggc
     2221 gtcgcgcagc gccatcactt cggcgtgtgc gctgcccgac tgctgggtgt gaccacgccc
     2281 gatcacgcga ccgtcggccg cgacgatgac gcagccgacc cgcgggttcg gctcgcaccc
     2341 gccgatggcg agcgcggcga gtcgcagcgc tt
//
LOCUS       DASVHM010000882         2019 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_644056, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000882 DASVHM010000000
VERSION     DASVHM010000882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_644056"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..715
                     /locus_tag="VF308_16245"
     CDS             <1..715
                     /locus_tag="VF308_16245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020201118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX7438256.1"
                     /translation="ANAMNTQMGLDLLDIFGDLFAKPDAYRAVVMTGAGERAFCAGGD
                     LKERQGMSDDAWQAQHLIFERMIRAVLECPMPVIAAVNGAAYAGGCEIALGCDFIYAA
                     RTARFALTEVTIGIMPGAGGTQNLPRAVGLRRAKEILLTGRPFSAEDACEWGMVNRLC
                     EAGAVVTDALETAAAIAANAPISIRQAKRSMHYGINMSLADGMLFEIEAYNRMVPTED
                     RREGIASFNEKRKPVFKGR"
     gene            729..1667
                     /locus_tag="VF308_16250"
     CDS             729..1667
                     /locus_tag="VF308_16250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005019901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA lyase"
                     /protein_id="HEX7438257.1"
                     /translation="MTEKVALREVGMRDGLQSLPPILTTEQKNAWCAAEFAAGVREIE
                     VTSFVPPKLLPMFADAEEVVRHALTLDGLTVSALIPNLRGAERGVALGVHELAYVLSV
                     SEGHNQNNVRRSTAESIADLKRVIELRNSLETGRRVKVVAGLATCFGCTIEGRVDEKR
                     VFAIAAEVLALKPDALMIADTVGYGNPAAVRRVFRELLDMAGGVPVGAHFHNTRGLGL
                     ANVLAALEVGVRGFDASLGGLGGCPWAPGATGNIVMEDTAFMLETMGFDTGIDLERLI
                     EVRRMVEGFMPGIPFHGDLPKAGIPKNYVPRLTAAA"
     gene            1687..>2019
                     /locus_tag="VF308_16255"
     CDS             1687..>2019
                     /locus_tag="VF308_16255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014193378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX7438258.1"
                     /translation="MHGAFAAGDNVTMELGEDYLELRESVRRVCARYPGAYWRGLDAK
                     SAYPTEFIKELTDSGFLAALIPEEYGGTGLPLRAAAVILEEINASGCTASQGHAQMYI
                     MGTLLRHGT"
BASE COUNT          338 a          688 c          680 g          313 t
ORIGIN      
        1 cgccaacgcg atgaacaccc agatgggcct cgatctcctg gacatcttcg gcgacctctt
       61 cgccaagccc gacgcctacc gcgccgtggt gatgacgggc gcgggcgagc gcgcgttctg
      121 tgccggcggc gacctcaagg aacgccaggg catgtcggac gacgcatggc aggcgcagca
      181 cctgatcttc gagcgcatga tccgcgccgt cctcgaatgc ccgatgccgg taatcgccgc
      241 cgtcaacggc gccgcctatg ccggtggctg cgagatcgcg ctcggctgcg acttcatcta
      301 cgcggcgcgc accgcccgct tcgcgctcac cgaggtgacg atcggcatca tgccgggcgc
      361 cggcggcacc cagaacttgc cgcgcgccgt cggcctgcgc cgggccaagg agatcttgct
      421 cacgggccgc ccgttctcag ccgaagatgc ctgcgagtgg ggcatggtca accgcctgtg
      481 cgaagccggc gccgtcgtca cggacgcgct ggagaccgcg gcggcgatcg ccgccaacgc
      541 cccgatttcg atccggcaag cgaagcgctc catgcattac ggcatcaaca tgagcctggc
      601 cgacggcatg ctgttcgaga tcgaggccta caaccgcatg gtcccgaccg aggaccgccg
      661 cgagggcatc gcgtcgttca acgagaagcg caagccggtg ttcaagggcc ggtgacagga
      721 gcgaagccat gaccgagaag gtagcgttac gcgaggtcgg catgcgggac gggctgcaga
      781 gcctcccgcc catcctcacc accgagcaga agaacgcgtg gtgcgcggcc gagttcgccg
      841 ccggcgtcag ggagatcgag gtgacctcct tcgtgccgcc gaaactcctg ccgatgttcg
      901 ccgacgccga ggaggtggtc cggcatgcgc tgacgctcga cgggctcacg gtcagcgcgc
      961 tgatcccgaa cctcagaggc gccgagcgcg gcgtcgcgct cggcgtgcat gaactcgcct
     1021 acgtgctctc ggtgagcgag ggccacaacc aaaacaacgt ccgccgctcg accgccgagt
     1081 cgatcgccga cctgaaacgc gtgatcgaac tgcgcaacag cttggagaca gggcggcgcg
     1141 tgaaagtggt agccggcctc gcgacctgct tcggctgcac catcgagggg cgcgtcgacg
     1201 agaaacgggt cttcgccatc gccgcggagg tactggcgct caagcccgat gcgctgatga
     1261 tcgccgacac cgtcggctac ggcaatccgg ccgcggtccg ccgggtcttc cgcgagctgc
     1321 tcgacatggc cggcggagtg ccggtcggcg cgcatttcca taacacgcgc gggctcggtc
     1381 ttgcgaatgt tctcgcggcc ttggaggtcg gggtgcgcgg cttcgacgcc tccctcggcg
     1441 gcctcggcgg ctgcccctgg gctccgggcg cgaccggcaa catcgtgatg gaggacaccg
     1501 ccttcatgct ggagacgatg gggttcgaca ccggcatcga tctcgaacgc ctgatcgagg
     1561 ttcgccgcat ggtcgagggc ttcatgccgg gcattccttt ccacggcgat cttcccaagg
     1621 ccggcattcc aaaaaactat gtgccccggc ttaccgccgc ggcctgatca atcgggagtg
     1681 taaacgatgc atggagcctt cgcggcgggc gacaacgtca ccatggagct gggcgaggat
     1741 tacctcgaat tgcgggagtc cgttcgtcgc gtctgcgcac gctaccccgg cgcgtactgg
     1801 cgcgggctcg acgccaagtc ggcctatccg acggagttca tcaaggagct gaccgacagc
     1861 ggcttcctcg cggcgctgat ccccgaggag tacggcggca cggggctgcc gctgcgcgcc
     1921 gcggccgtca tcctggaaga gatcaacgct tcgggctgca ccgcgagcca gggccatgcc
     1981 cagatgtaca tcatgggtac ccttttgcgg cacggcacg
//
LOCUS       DASVHM010000883        10393 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1218691, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000883 DASVHM010000000
VERSION     DASVHM010000883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 10393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10393
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1218691"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VF308_16260"
     CDS             <1..382
                     /locus_tag="VF308_16260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HEX7438259.1"
                     /translation="DHCVQGTPDSALHKDLAIPKAQLIIRKGFHQGTDSYSAFMEADG
                     KTSTGLAAYLKARSIDSVYVCGLATDFCVAWTALDARKAGFKAAVIEDASRGIDLNGS
                     LKAAWAQMAKAGVRRIQSGDIAAA"
     gene            445..1641
                     /locus_tag="VF308_16265"
     CDS             445..1641
                     /locus_tag="VF308_16265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007849398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7438260.1"
                     /translation="MLKPLLVAAVSSALLIGGAARAQDTIKIGEINSYKAQPAFLEPY
                     KKGWELAVEEVNAAGGVLGKKLQVVSRDDNGNPGDAVRVAEELVSREGVALIAGTFLS
                     NTGLAVTDFAKQRKVFFLAAEPLTDKITWQNGNRYTFRLRPNTYMQSAMLVPEAAKLK
                     KKRWAIVYPNYEYGQSAAATFKAMLKKLQPDVEFVAEQAPPLGRIDAGAVAQALADAK
                     PDAIFNVLFGADLSKFVREGNTRELFKGREVVSLLTGEPEYIEPLREEAPVGWIVTGY
                     PYYGIQTDEHKKFFLAYFRKYNEYPRLGSVVGYSTILSIAEGIRKAKSTDTEKLIAAF
                     SGMQVLTPLGKVTYRAIDHQSTMGAYLGRTKLEGSKGVMTDYVYLDGAKYLPSDDEVK
                     KLRAVD"
     gene            1673..3517
                     /locus_tag="VF308_16270"
     CDS             1673..3517
                     /locus_tag="VF308_16270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX7438261.1"
                     /translation="MTLDSALLQIMTGLASASTLFLVGCGLSLIFGVTRIVNFAHGSF
                     YMLGLYAAVSLAGWFAPGPFGFWGGVLLAALAVALVGAVIEMLVLRRLYAAPELYQLL
                     ATFALVLVIKDAALWAWGPEDLLGPKAPGLSGALTLLGKPFPSYDLFSICVGPLVLGA
                     LWLLLTRTRWGLLVRAATQDREMVGALGVNQQWLFTSVFALGTFLAALGGALQMPHEP
                     ANLSLDLALIGEAFVVVVVGGMGSVVGAFVAAVLIAMVKAFCIGAGSIDVFGAPFPLS
                     KLTLVAEFAVMAVVLVWRPWGLFGKPQAVVRSSAAIETPHRPLPIVWKRWGLVALVAL
                     LLVPLLQGPAPYSVVLMIDLLIAVLFATSLHFVMGPAGMHSFGHAAYFGLGAYGAALF
                     LKALALPMEVALLLAPLLGALGALLFGWFCVRLSGVYLAMLTLAFAQIVWSVVYQWDA
                     VTGGSNGLVGIWPAAWLAPKPVYYLVTLLFTVAGCGLFARMLHAPLGLALRAGRDSPL
                     RATAVGIDVARVQWLAFVISGALAGLAGALFAFAKGTISPETLGIGKSVDGLVMVLLG
                     GVQALSGPWIGGALFTWLQDTVARQTDYWRALLGIAGSLRRVFLKEPA"
     gene            3514..4293
                     /locus_tag="VF308_16275"
                     /pseudo
     CDS             3514..4293
                     /locus_tag="VF308_16275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007831877.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
     gene            4384..5103
                     /locus_tag="VF308_16280"
     CDS             4384..5103
                     /locus_tag="VF308_16280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7438262.1"
                     /translation="MGAPIMLDVVALDAWYGKAQILYGVSLRVEEGECVALMGRNGAG
                     KSTTMKAIMGLLGKRSGRVAFRGRDISALPPYRINRLGLGWVPEDRRIFTDLTVRENL
                     AVARQPERAGRAPHWTEAQLFDLFPNLATMPDRPGGRMSGGEQKMLTIARTLMGNPHL
                     ILLDEPSEGVAPLIVEQMARMIVALKSQGLSILLSEQNLHFARLVADRAVVLEKGQVR
                     YADSMQALLEDESVQRSYLSV"
     gene            5135..7180
                     /locus_tag="VF308_16285"
     CDS             5135..7180
                     /locus_tag="VF308_16285"
                     /inference="COORDINATES: protein motif:HMM:NF014071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HEX7438263.1"
                     /translation="MSRVAGIDVGGTFTDLILVDAATGTVRFAKVPTTAPNQAYGVLA
                     ALDAAGADPASLDAIVHGTTTTTNAMLERKIARVGLITTRGFRDVLELGRRTRPTPYG
                     LTGRFVPLIPRELRLEVDERMDAEGAVLEPLDEAGVESAARRLIAAGAESVVIHFLHS
                     YINPAHEVRAAEIVRALWPNPYVTAGHTVVAEYREYERGTTAAVNAAIQPVLHRYIAR
                     LRGELAARGFTRELLVMQGNGGTVSSSIVAEHAVATVMSGPASGVIAAAVTALQAGAF
                     PGEFANVVTYDMGGTSSDVALVLNGLPSVSSDLELEYAMPIHVPMVDVHTIGAGGGSL
                     ASVDASGMLRVGPQSAGAAPGPICYGRGGTRPTITDANLAPGRLDPERLLSVDNPVSM
                     DALRAAIVAVVGAPLGLDAAAAAAAIVRVANDKMAGAVRMVSLARGHDPRDFALFAFG
                     GAGPLHAVALARELGIPKVLIPARPGLTNALGCVVADLRHDFVATVNQPLEALAEARI
                     GAVFQAQVVAGRERIAREQVAVESIVTVHRADMQFQGQSHILPVAVPDAGITLAQLRA
                     AFEAAYWQRFGVELSEIRPVLVNLHTAVIGKRRTVSLKAIMAAEPRATLAEAMRTRRP
                     VWFDGDWIETPVYLREQLPLGAEFAGPAIVEQLDCTTVVEPGNRVAMDSIGNLIITV"
     gene            7272..8966
                     /locus_tag="VF308_16290"
     CDS             7272..8966
                     /locus_tag="VF308_16290"
                     /inference="COORDINATES: protein motif:HMM:NF014585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HEX7438264.1"
                     /translation="MNIDPITLGVLQNGLQQVCNEMDLAFVRSAFSPVIAEALDRSDG
                     IYHLTTGELVAQGELGLPVFVGTMQFTVQAVIERVQRLKIALDPGDVFIVNDPYLGGT
                     HLMDVKFVQPFFYAGKPWCWLANTGHWPDTGGMVPGGFSANATEVEQEGLRLPPVKLY
                     KRGVIDDEILSIILSNIRIADQRIGDIKAQAAALASGERRLAALLDRYGAGTVEAAIA
                     ELKVRAARQMRERIGTIPDGSYEGEAFVDSDGVVNEPLRIAMRITKSGQGDAAMLSFD
                     MSGSSPPCKGPMNSVIATTKSSIYLAVKHVFPEVSINAGTFEPLHIVEPEGTFLYAHY
                     PRPVSGCAAEVSQRIAEAVFAALGQAIPDQLFGAPAGTSGNLGVGGFDPKTQRAYVMY
                     VISGGGYGGSPHGDGISNGCSTIGISKTTPIEIMEQLYPVLFEEYSLHEGSGGAGEHR
                     GGFGVNYRIRLRRGDARVSMVMDHGRAGPPGAQGGGAGGVNKVKIIRDGIEYVPEHLS
                     KDQDIEIHAGDVISVSTPGGGGYGPPSYRASPARERDVALGYYTAQESERLYGAAR"
     gene            8987..9187
                     /locus_tag="VF308_16295"
     CDS             8987..9187
                     /locus_tag="VF308_16295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HEX7438265.1"
                     /translation="MSVPIVASPCIEVCTLDPRTGLCEGCLRTLDEIAAWGVLNNRQK
                     REVWKLLPQRRLDFNASKAERP"
     gene            9184..9825
                     /locus_tag="VF308_16300"
     CDS             9184..9825
                     /locus_tag="VF308_16300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxychromene-2-carboxylate isomerase"
                     /protein_id="HEX7438266.1"
                     /translation="MKQIDFWFDPISPYAYLAFERLPEALEGLSYSVSYRPILFAALL
                     KHWDHKGPAEIEPKRAWTFRQVQWLAHGHGVPLKTPARHPFNPIALSRLAWATAPARA
                     TPNRYVCATILAHVWKGGGADAEEPSRFAELRARLAPRFDPASEPIKQKLREATEAAI
                     GKGIFGVPTIGVDGRLFWGLDALPMLGAYLRGDPWFDGPAWQLAGAPRPGVVR"
     gene            9963..10271
                     /locus_tag="VF308_16305"
     CDS             9963..10271
                     /locus_tag="VF308_16305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HEX7438267.1"
                     /translation="MDIDLVRRIASDPKYQELKAKRTRFGWWLTLAMMVVYYGFILLV
                     AFNKEFLSQRMGAGVMTVGIPIGFGVIVFTIVITAIYVKRANREFDDLAADVAKAVLK
                     "
BASE COUNT         1534 a         3609 c         3572 g         1678 t
ORIGIN      
        1 cgaccactgc gtgcagggaa cgcccgattc ggcgttgcac aaggatctcg cgattccgaa
       61 ggcgcagctc atcatccgta agggctttca ccagggcacc gacagctatt cggcgttcat
      121 ggaagccgac ggcaagacct caaccggcct ggccgcctac ctgaaggcac gcagcatcga
      181 ctcggtctac gtgtgcgggc tcgcgaccga tttctgcgtc gcgtggaccg cgctcgacgc
      241 gcgcaaggcc ggcttcaagg ccgcggtgat cgaggacgcg tcgcgcggca tcgacctgaa
      301 cggctcgctg aaggcggcgt gggcgcagat ggccaaggcc ggcgtcaggc gcatccagtc
      361 gggcgacatc gccgcggctt agggcctgcc ctcaggtccg ctgcgcgccg ccctccgtcc
      421 gcatcctctc caggagtctt cgtcatgctg aaacccttgc tcgtcgccgc cgtctcgtcc
      481 gccttgttaa tcggcggagc ggcgcgcgcc caggacacca tcaagatcgg cgaaatcaac
      541 agctacaagg cgcagccggc cttcctggag ccctacaaga agggctggga actggcggtg
      601 gaagaggtca atgcggcggg cggcgtgctc ggcaagaagc tgcaggtcgt ctcgcgcgac
      661 gacaacggca accccggcga cgccgtccgc gtcgccgagg aactggtctc gcgcgagggc
      721 gtcgcgctga tcgccggcac gttcctctcc aacaccggcc tggccgttac cgacttcgcg
      781 aagcagcgca aggtgttctt cctcgccgcc gagccgctca ccgacaagat cacctggcag
      841 aacggcaacc gatacacctt ccggctgcgg cccaacacct acatgcagtc ggcgatgctg
      901 gtgccggaag ccgccaagct gaagaagaag cgctgggcca tcgtctaccc gaactacgag
      961 tacgggcagt cggccgcggc gaccttcaag gcgatgctga agaagctgca acccgacgtc
     1021 gagttcgtcg ccgaacaggc gccgcccctc ggccgcatcg atgccggcgc cgtcgcgcag
     1081 gccctcgccg acgccaagcc cgatgcgatc ttcaacgtgc tgttcggcgc cgacctgtcg
     1141 aagttcgtgc gcgagggcaa cacgcgcgag ctcttcaagg gccgcgaggt cgtgagcctg
     1201 ctgacgggcg agcccgaata catcgagccg ctgcgcgagg aggctcccgt cggctggatc
     1261 gtcaccggct acccgtacta cggcatccag accgatgagc acaagaagtt cttcctcgcc
     1321 tacttccgca agtacaacga atacccgcgg ctcggctcgg tggtgggcta ctcgaccatc
     1381 ctgtcgatcg ctgaaggcat caggaaggcc aagtcgaccg acaccgagaa gctgatcgcg
     1441 gcattcagcg gcatgcaggt cctgacgccg ctcggcaagg tcacctaccg cgcgatcgat
     1501 caccagtcga cgatgggcgc atacctcggc cggaccaagc tcgaagggtc gaagggcgtg
     1561 atgaccgact acgtctacct cgacggcgcc aaatacctgc cgagcgacga cgaggtgaag
     1621 aagctgcggg cggtggactg acgagcctgc accgagccgg cgcccgagcc gcatgaccct
     1681 cgactccgcg ctgctgcaga tcatgaccgg cctggcgtcg gcgtcgacgc tcttcctcgt
     1741 cggctgcggg ctgtcgctga tcttcggcgt aacccgcatc gtcaacttcg cgcatggctc
     1801 gttctacatg ctcggcctct acgcggcggt ctcgctggcc ggctggttcg cgcccggccc
     1861 gttcggtttc tggggcggcg tgctgctcgc ggcactcgcg gtcgcgctcg tcggcgcggt
     1921 catcgagatg ctggtgttgc gccgccttta cgcggccccc gagctctacc agttgctcgc
     1981 caccttcgcg ctcgtgctgg tcatcaagga cgcggccctc tgggcctggg gcccggaaga
     2041 cctgctcggc ccgaaggcgc ccggcctctc gggtgcgcta acgctgctcg gcaagccgtt
     2101 cccgagctac gacctgttct cgatctgcgt cggcccgctc gtgctgggcg cgctctggct
     2161 gctgctcacg cgcacgcgtt ggggcctgct cgtgcgcgcc gccacgcagg accgcgagat
     2221 ggtcggcgcc ctcggcgtca accagcaatg gctcttcacc tcggtgttcg cgctcggcac
     2281 cttcctggcg gcgctcggcg gcgcgttgca gatgccgcac gagccggcca acctgagcct
     2341 cgacctcgcg ctgatcggcg aggccttcgt cgtcgtcgtg gtcggcggga tgggttcggt
     2401 cgtcggcgcg ttcgtcgccg cggtgctgat cgcgatggtc aaggcgtttt gcatcggcgc
     2461 cggctcgatc gacgtcttcg gcgcgccgtt tccgctcagc aagctgaccc tcgtggccga
     2521 gttcgcggtg atggcggtcg tgctggtctg gcgcccgtgg ggcctgttcg gcaagccgca
     2581 ggcggtggtg cgcagcagcg ccgcgatcga aacgccgcac cggccgctgc cgatcgtctg
     2641 gaagcgctgg ggccttgtcg cgctcgtggc cctgctgctc gtgccgctgc tgcagggtcc
     2701 ggctccttat tccgtcgtgc tgatgatcga cctgctgatc gcagtgctct tcgcgacgag
     2761 cctgcatttc gtgatgggcc cggcgggcat gcactcgttc ggccatgcgg cctacttcgg
     2821 cctcggcgcc tacggcgcgg cgctgttcct gaaggcgctc gcgctgccga tggaggtggc
     2881 gctgctgctc gcgccgctgc tcggcgcgct cggcgcgctc ctgtttggct ggttctgcgt
     2941 gcgcctctcg ggcgtctacc tcgcgatgct gacgctcgcc ttcgcgcaga tcgtctggtc
     3001 ggtcgtctac cagtgggatg cggtcaccgg cggcagcaac ggcctggtcg gcatctggcc
     3061 ggcggcgtgg ctcgcgccca agccggtcta ctacctcgtg acgctgctct tcacggtcgc
     3121 gggctgcggc ctcttcgcgc gcatgctgca tgcgccgctc ggcctcgcac tgcgcgccgg
     3181 gcgcgactcg ccgctgcgcg cgacggcggt cggcatcgac gtggcgcggg tgcaatggct
     3241 cgccttcgtc atctcgggtg cgctcgccgg tctcgccggt gccctcttcg cgttcgccaa
     3301 agggacgatc tcgcccgaga cgctgggtat cggcaagtcg gtcgacggcc tcgtgatggt
     3361 gctgctcggc ggcgtacagg cgctttccgg cccgtggatc ggcggcgcgc tcttcacctg
     3421 gctgcaggac acggtcgcgc gccagaccga ctactggcgc gccttgctcg gcatcgccgg
     3481 cagcctgcgg cgcgtgttcc tgaaagagcc cgcatgagca cggccacgcg tggaagcgcc
     3541 ggcgcggcgc ccttgttgcg tgtcgcccac ctctcgaagg cgttcggcgg cctgcgcgcc
     3601 gtgcacgagg tgagcttcga gttgcacgcc ggcgagctgc tggccctgat cggcccgaac
     3661 ggcgccggca agacgacctg tttcaacatg gtgaacgggc agttgaagcc cgacgcgggt
     3721 tcggtcgtct tcgtcggcac cgagctggtc ggcctccggc ccgataccat ctggcgcctc
     3781 ggcgtcggcc ggaccttcca gatcgccgag accttcgcat cgctcacggt ggtcgagaac
     3841 gtgcagctcg cgctgctgtc gcacgccggc cgcgtgtttc gggcctggcg ttcggcgcgc
     3901 gggcagttcc gtgccgaggc gctcgcattg ctcgtgagcg tcggcatggc ggcgcaggcc
     3961 gaacgcgcga tgagcgtgct cgcctatggc gacgtgaagc gggtcgaact cgcgatggcg
     4021 ctcgccaacc agccgcgcct gctgctgatg gacgagccca ccgcgggcat gggcccggcc
     4081 gagcgcaacg acctgatggc gctgacccgg tcgctcgcgc gcgagaaggc catcggcgtg
     4141 ctcttcaccg agcacagcat ggacgtcatc ttcgcgcacg ccgaccgcat gatcgtgctc
     4201 gcgcgcggcg aactgatcgc cgcgggcgac ccggcgaccg tgcgcgacga cccgcaggtg
     4261 cggcaggtgt atttcggcat gggctcgacg ttcggatcgc ccgggactag gccgagcgcc
     4321 gccgagccgc cccaaggcgc gagcgccccc tcggggggca gcgccgcggc gcaagccgca
     4381 agcgtggggg caccaatcat gcttgatgtc gttgccctcg acgcctggta cggcaaggcg
     4441 cagatcctct acggcgtgtc gctgcgggtc gaggagggcg agtgcgtcgc gctgatgggg
     4501 cgcaacggcg ccggcaagtc gacgacgatg aaggcgatca tgggcctgct cggcaagcgc
     4561 agcggccgcg tcgcctttcg gggccgcgac atctcggcgc tgccaccgta tcgcatcaac
     4621 cggctcggcc tcggctgggt gccggaagac cggcgcatct tcaccgacct tacggtgcgc
     4681 gagaacctcg ccgtcgctcg ccagcccgag cgcgccgggc gcgcgcccca ctggaccgag
     4741 gcgcagttgt tcgatctgtt cccgaacctc gcgacgatgc cggatcggcc cggcgggcgc
     4801 atgagcggcg gcgagcagaa gatgctgacg atcgcacgca cgctgatggg caacccgcac
     4861 ctgatcctcc tcgacgaacc gtcggagggc gtcgcgccgc tcatcgtcga gcagatggcg
     4921 cggatgatcg tcgcgttgaa gagccagggc ctttcgatcc tgctgtcgga gcagaacctc
     4981 catttcgcgc gcctcgtggc ggaccgcgcc gtggtgctcg agaagggcca ggtgcgttat
     5041 gccgattcga tgcaggcgct gcttgaagac gagtcggtgc agcgcagcta cctgagcgta
     5101 tgaatccggg ccgaccgcct atggaatccc tccgatgagc cgcgtcgcgg ggatcgacgt
     5161 cggcggcacc ttcaccgacc tgatcctggt cgacgccgcg accggcacgg tgcgcttcgc
     5221 caaggtgccg acgaccgccc cgaaccaggc ttacggcgtg ctcgccgcgc tcgacgcggc
     5281 cggcgccgac ccggcctcgc tcgatgccat cgtgcacggc acgacgacga ccacgaacgc
     5341 gatgctcgag cgcaagatcg cgcgggtcgg gttgatcacg acgcgcggct ttcgcgacgt
     5401 gctggaactc ggccgcagga cccggccgac gccctacggc ctgaccggcc gcttcgtgcc
     5461 gctgatcccg cgcgaactgc gcctcgaggt cgacgagcgc atggacgccg agggcgccgt
     5521 gctggagccg ctcgacgagg cgggcgtcga gagcgccgcg cgccgcctga tcgccgccgg
     5581 cgccgaaagc gtcgtgatcc acttcctgca cagctacatc aacccggcgc acgaggtgcg
     5641 cgcggccgag atcgtgcgcg cgctgtggcc gaacccgtac gtcaccgccg ggcacaccgt
     5701 cgtggccgag taccgcgaat acgaacgcgg cacgaccgcc gcggtgaacg ccgcgatcca
     5761 gccggtcctg caccgctaca tcgcgcgcct gcgcggcgag ctcgccgcac gcggcttcac
     5821 ccgcgagttg ctggtgatgc agggcaacgg cggcacggtg tcgtcgagca tcgtcgccga
     5881 gcatgcggtc gcgacggtga tgtcgggccc ggcgtcgggc gtgatcgcgg ccgcggtcac
     5941 ggcgctgcag gccggcgcct ttcccggcga gttcgccaac gtcgtgacct acgacatggg
     6001 cggcacttcg agcgacgtcg cgctcgtgct gaacgggctg ccgtcggtct cgagcgatct
     6061 cgaactcgaa tacgcgatgc cgatccacgt gccgatggtc gacgtccaca cgatcggcgc
     6121 cggcggcggc tcgctcgcct cggtcgatgc ctcgggcatg ctgcgcgtcg ggccgcagag
     6181 cgcgggcgcg gcgccggggc cgatctgcta cggccgtggc ggcacgcgtc caaccatcac
     6241 cgacgcgaac ctcgcgcccg gccggctcga ccccgagcgg ctgctctcgg tcgacaaccc
     6301 ggtgtcgatg gacgccctgc gcgcggccat cgtcgcggtg gtcggcgcgc cgctcgggct
     6361 cgacgccgcc gcagcggccg cggcgatcgt gcgcgtggcc aacgacaaga tggccggcgc
     6421 ggtgcgcatg gtgagcctgg cgcgcggcca cgacccgcgc gatttcgccc tcttcgcgtt
     6481 cggcggcgcc ggcccgctgc acgccgtggc gctggcgcgc gaactcggca tcccgaaggt
     6541 gttgatcccg gcgcgaccgg gcctcacgaa tgcgctcggc tgcgtcgtcg ccgacctgcg
     6601 ccacgacttc gtcgcgaccg tcaaccagcc gctcgaagcg ctcgccgagg cgcgcatcgg
     6661 cgccgtgttc caggcgcaag tcgtggccgg ccgcgagcgc atcgcgcgcg agcaggtggc
     6721 ggtcgaaagc atcgtcaccg tgcaccgcgc cgacatgcag ttccagggcc agagccacat
     6781 cctgccggtg gccgtgccgg acgccggcat cacgctcgcg caactgcgcg ccgcattcga
     6841 agctgcatac tggcagcgct tcggcgtcga gctttcggag atccggccgg tgcttgtcaa
     6901 tcttcacacg gccgtcatcg gcaagcgccg caccgtttcg ctcaaggcga tcatggcggc
     6961 agagccgcgt gccaccttgg ccgaagcgat gcgcacgcgg cggccggtct ggttcgacgg
     7021 cgactggatc gagacgccgg tctacctgcg ggagcagttg ccgctcggtg ccgagttcgc
     7081 cgggccggcg atcgtcgagc aactcgactg cacgacggtg gtcgaaccgg ggaatcgggt
     7141 tgcgatggat tccatcggga acctgatcat cacggtgtga ctgtgatggc tgtcttcttg
     7201 ctgcttgcag cagcccgccg gtctcggccg ccggccgagc ccggcgggct ctttcgagga
     7261 acggcgaaag aatgaacatc gatccgatca cgctaggcgt gcttcaaaac ggcctgcagc
     7321 aggtctgcaa cgaaatggac cttgccttcg tgcgcagcgc attcagcccg gtgatcgcgg
     7381 aggcgctcga tcgctccgac gggatctatc acctgaccac cggcgagttg gtcgcgcagg
     7441 gcgagctcgg cctgccggtc ttcgtcggca cgatgcagtt tacggttcag gcggtgatcg
     7501 agcgcgtgca gcgtctgaag atcgccctcg atccgggcga cgtcttcatc gtcaacgacc
     7561 cttatctcgg cgggacgcac ctgatggacg tgaagttcgt gcagccgttc ttctacgcgg
     7621 gcaagccgtg gtgctggctc gccaacaccg gccactggcc cgacaccggc ggcatggtgc
     7681 cgggcgggtt ctcggccaac gccaccgaag tcgagcagga aggcctgcgc ctgccgccgg
     7741 tcaagctcta caagcgcggc gtgatcgacg acgagatcct ctcgatcatc ctgtcgaaca
     7801 tccgcatcgc cgaccagcgc atcggcgaca tcaaggcgca ggccgcggcg ctcgcgagcg
     7861 gcgaacggcg cctggccgcg ctgctcgatc gctacggcgc gggcacggtc gaggccgcga
     7921 tcgccgaact gaaggtgcgg gccgcgcgcc agatgcgcga acgcatcggg acgattccgg
     7981 acggcagtta cgagggcgag gcgttcgtcg actccgacgg cgtcgtcaac gagccgctgc
     8041 gcatcgcgat gcggatcacg aagtcggggc agggcgacgc tgcgatgctc agcttcgaca
     8101 tgagcggctc gtcgccgccg tgcaagggcc cgatgaacag cgtgatcgcg accaccaagt
     8161 cgtcgatcta cctcgccgtc aagcacgtat ttcccgaggt ctcgatcaac gccggcacgt
     8221 tcgagccgct gcacatcgtc gagccggaag gcacgttcct gtacgcccac tatccgcgcc
     8281 cggtctcggg ctgcgccgcc gaggtcagcc agcgcatcgc cgaggcggtg ttcgcggcgc
     8341 tcggccaggc gattcccgac cagctcttcg gcgcgccggc cggcaccagt ggcaacctcg
     8401 gcgtcggcgg cttcgatccg aagacccagc gcgcctacgt catgtacgtg atctcgggcg
     8461 gcggctacgg cggcagtccg cacggcgacg gcatctcgaa cgggtgttcg acgatcggca
     8521 tctcgaagac gacgccgatc gagatcatgg agcagctcta cccggtgctg ttcgaggagt
     8581 attcgctcca cgaaggctcg ggcggcgcgg gcgagcaccg cggcggcttc ggcgtcaact
     8641 accggatccg gctgcggcgc ggcgacgccc gcgtctcgat ggtgatggac cacggccgcg
     8701 ccggcccgcc cggcgcgcag ggcggcggcg cgggcggggt caacaaggtc aagatcatcc
     8761 gcgacggcat cgagtacgtg cccgaacacc tctcgaagga ccaggatatc gagatccatg
     8821 ccggcgacgt gatcagcgtc tcgacgccgg gtggcggcgg ctacgggccg ccttcttatc
     8881 gggccagccc cgcccgcgag cgcgatgtcg cgctcggcta ctacactgcg caagagtccg
     8941 agcggctgta cggcgcggca cgttgaaacc gagtattttt ctcccgatgt ctgttccgat
     9001 cgtcgccagt ccctgcatcg aggtctgcac cctggacccg cgcacggggt tgtgcgaagg
     9061 gtgcctgcgc acgctcgacg aaatcgcggc ctggggcgtg ctgaacaatc ggcagaagcg
     9121 cgaggtgtgg aagctgctgc cgcagcggcg cctcgatttc aacgccagca aggcggagcg
     9181 accatgaagc agatcgattt ctggttcgat ccgatctcgc cgtacgcata cctcgccttc
     9241 gaacgcctgc ccgaagccct cgagggcttg tcgtacagcg tcagctaccg cccgatcctg
     9301 ttcgccgcgc tcctcaagca ctgggaccac aagggtccgg ccgagatcga gccgaagcgg
     9361 gcctggacct tccgccaggt ccagtggctc gcgcacgggc acggcgtgcc gctcaagacg
     9421 ccggcgcgtc acccgttcaa tccgatcgcg ctctcgaggc tggcctgggc cactgcgccc
     9481 gcccgcgcga cgccgaaccg ctacgtctgc gcgacgatcc tcgcgcacgt ctggaagggg
     9541 ggcggcgccg acgccgaaga gccgtcgcgt tttgccgaac tgcgcgcgcg gcttgctccg
     9601 cgcttcgatc cggcgagcga gccgatcaag cagaagctgc gcgaggccac cgaggccgcc
     9661 atcggcaagg gcatcttcgg cgtgccgacg atcggcgtcg acggccgcct gttctggggc
     9721 cttgacgcct tgccgatgct cggcgcgtat ctgcgcggcg acccgtggtt cgacggcccg
     9781 gcctggcagc tcgccggcgc gccgcgaccg ggcgtcgtgc gctagcaggc tgttgaaata
     9841 cgattcgggg tcggcccggg ggcgtcgttt atttgctgcg cgtcaagaca cgaccggtgc
     9901 cagagcggat gatgccgagt ggcattggca gagcgtcagc tctacaacat cgaggagaca
     9961 gcatggacat cgacttggtc aggcggatcg cgagcgatcc gaaataccag gagctgaaag
    10021 ccaagcgtac ccgcttcggc tggtggctga cgctggcgat gatggtcgtc tactacggct
    10081 tcatcctgct ggtggctttc aacaaggaat tcctgtcgca gcggatgggc gccggcgtca
    10141 tgacggtcgg cattccgatc ggcttcggcg tcatcgtgtt caccatcgtg atcaccgcca
    10201 tctatgtcaa gcgcgccaac cgcgagttcg acgatctggc cgcggacgtg gcgaaggcgg
    10261 tgctgaaatg agccgcctca ccgacaactc gcgccgtctg ctgacgctgg ccgcgctgtt
    10321 cggcgtatcc gtggcggtct gggccgccgg ggctgacctc ggccaagccc agaagcaggc
    10381 caccaactgg acg
//
LOCUS       DASVHM010000884         1768 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_209559, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000884 DASVHM010000000
VERSION     DASVHM010000884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209559"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1487)
                     /locus_tag="VF308_16310"
     CDS             complement(<1..1487)
                     /locus_tag="VF308_16310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HEX7438268.1"
                     /translation="MSSGVIRIRGARQHNLKNLDLDIRIGEMTVVTGPSGSGKSSLVF
                     DTLYAEGQRRYVETFSAYARQFLERMDRPAVDRVDGVPPAIAIDQTNPVRSSRSTVGT
                     MTELNDHLKLLFARAAELFDRQTAQRVRHDTPETIHAELMRRTQGEDPRLVVTFPVEL
                     PANTSATEIEQWLSASGYTRVQAERDVASPTGPRKVLDVVADRFRIQGVEKARAVEAI
                     ETALKRGSGRVNVYVLPAAGDAEGEAATPSLWRFSTGLHCPESDLRYADPQPALFSFN
                     SAYGACETCRGFGRVIGVDYGLVIPDPRKTLRSGAIKTIQTPAWKEQQVDLMKFAGEA
                     GIPRDTAWMHLTEGQRDWVINGSPNWNGKWNKQWYGIKRFFGYLESKAYKMHIRVLLS
                     KYRSYTPCPVCGGARLKTEALLWRLGSKADADAVLPAEARFMPRRVAWARGQLEALPG
                     LTVHDLMMLPIARIRRFFDAVALPSGLLDDALKLLLDEIRTRLRY"
BASE COUNT          263 a          602 c          622 g          281 t
ORIGIN      
        1 atgtacctga gacgggtgcg gatctcgtcg aggagcagct tcaaggcgtc gtcaagcagg
       61 ccgctcggca gcgcgacggc gtcgaagaag cggcggatgc gcgcgatcgg cagcatcatc
      121 aagtcgtgca ccgtcaggcc gggcaaggcc tcgagctgcc cgcgcgccca ggcgacgcgg
      181 cgcggcatga agcgggcctc ggccggcagc acggcgtcgg cgtcggcctt gctgcccaga
      241 cgccacaaca gcgcctcggt cttcaaccgc gcgccaccgc agacgggaca cggcgtgtag
      301 ctccggtact tcgacagcaa gacgcggatg tgcatcttgt aggccttcga ttcgagatac
      361 ccgaagaagc gcttgatgcc gtaccactgc ttgttccact tgccgttcca gttcggcgag
      421 ccgttgatga cccagtcgcg ctgaccctcg gtgaggtgca tccaggcggt gtcgcgcggg
      481 atgccggcct cgccggcgaa tttcatcaga tcgacctgct gttccttcca ggccggcgtc
      541 tggatggtct tgatcgcgcc cgagcgcagc gtcttgcgcg ggtccggaat aacgaggccg
      601 tagtcgacgc cgatcacgcg gccgaagccg cggcaggtct cgcacgcgcc ataggccgag
      661 ttgaacgaga acagcgccgg ctgcggatcg gcgtagcgca agtcgctctc ggggcaatgc
      721 aggccggtcg agaagcgcca gagcgaaggc gtcgcggcct cgccttcggc gtcacccgcc
      781 gcgggcagca cgtacacgtt gacgcggccg ctgccgcgct tgagcgccgt ctctatggct
      841 tcgacggcgc gcgccttctc gacgccctgg atgcgaaacc ggtcggccac gacgtcgagg
      901 accttgcgtg gccccgtcgg cgacgcgacg tcgcgctcgg cctggacgcg ggtgtacccg
      961 ctcgcggaca gccactgttc gatttcggtg gcgctggtgt tcgcgggcag ttcgaccgga
     1021 aaagtcacga ccagccgcgg gtcttcgccc tgcgtgcgcc gcatcagctc ggcatggatc
     1081 gtctccggcg tgtcgtgccg gacgcgctgc gcggtctggc gatcgaagag ttcggccgcg
     1141 cgggcgaaga gcagcttcag atggtcgttc agctcggtca tcgtgccgac cgtgctgcgc
     1201 gagctgcgca ccgggttggt ctggtcgatc gcgatcgccg gcggcacgcc gtcgacgcga
     1261 tcgaccgcgg gccggtccat gcgctcgaga aactggcgcg cgtaggcgct gaaggtctcg
     1321 acgtagcgac gctgcccttc ggcatagagc gtgtcgaaca ccaggctcga cttgcccgag
     1381 ccgctcgggc ccgtcaccac cgtcatctcg ccgatgcgga tgtcgaggtc gaggttcttc
     1441 aggttgtgct gacgcgcgcc gcggatgcgg atgacaccgg aactcatgcg ggagaggctt
     1501 tcagtgcggc aacacaggaa tggcttgcct ggaaggagcg caacattcta ggcactccgt
     1561 tcacgccacg cgccgcccgg ggcattgcgg cccacggccc tcgttagact ggcgtcgatg
     1621 gatcccacga acgacgggtg cgcgcccgcg ccgcccgtgc ccgcgcgacc cggctgggcg
     1681 cgccgacgcc tgagccacct gcgccacctg cgccgccgcg cggccacgct gccggccccg
     1741 gtgcggggcc tgatgtgggc tgcggccg
//
LOCUS       DASVHM010000885         4785 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1218898, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000885 DASVHM010000000
VERSION     DASVHM010000885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4785
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1218898"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..519
                     /locus_tag="VF308_16315"
     CDS             <1..519
                     /locus_tag="VF308_16315"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEX7438269.1"
                     /translation="THDADGEIKGLNEFPDRHPPVLPLFFAFRLMVGMGVLMLLASWG
                     GWWLYRRAGWRVELLPRPLLRVFAAMTFAGWIATVAGWVVTEIGRQPYIVHGLIRTAD
                     VASKIGAPLIATTLALYVTLYLALIVAYIAVLKYMAEKPEEALDAHARDRAATPPDAV
                     TPPLATAPGSQT"
     gene            525..1520
                     /locus_tag="VF308_16320"
     CDS             525..1520
                     /locus_tag="VF308_16320"
                     /EC_number="7.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0006119 - oxidative phosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEX7438270.1"
                     /translation="MTFDQMLPIIFMALMGLAMLVYVVSDGYDLGVGMLMPRANEAEK
                     DVLIASIGPFWDANETWLVLGVGILLTCFPKAHGLVLTELYLPVALMLIGLVLRGVAF
                     DFRVKAKASHKSTWDRLFFAGSTLAATSQGWMLGRYVSGFGAGWNYPLFAAAIAAALP
                     AAYVLLGALWLVMKTEGDLQQKAIGWARLAWPPVVGGLILISMATPWISRTVRERWFV
                     LPEFIALMAIPLMTGVALYAVRALLSTRVVRGPYSWLPFVLMIGVFLLGFLGLAYSIY
                     PYVVIDRLTIWQAASSPGALKFILVGVVIAVPAIAGYTVFSYRVFRGKTAELRYA"
     gene            complement(1598..2326)
                     /locus_tag="VF308_16325"
     CDS             complement(1598..2326)
                     /locus_tag="VF308_16325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007853206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbC family protein"
                     /protein_id="HEX7438271.1"
                     /translation="MHKHLVSLVASLAVALFAQCAVAQEATIRKNLAERLPELPKIDE
                     VTKTSIPGIYELRMGADVYYTDEQGNHLFEGQLVDTRTRTNLTEARIAKLTAIDFAAL
                     PLRDAIVWKQGSGARKLVVFADPNCGYCKKFEKDLQQVKDVTVYTFLYPILGGDSPDK
                     ARNIWCAKDSTKVWREWMIEGASIPVSTAPCDSSALQRNFALGQKHRIRGTPGLVFED
                     GTHKPGALNAAQIEQLLVASRAKS"
     gene            complement(2336..3442)
                     /locus_tag="VF308_16330"
     CDS             complement(2336..3442)
                     /locus_tag="VF308_16330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX7438272.1"
                     /translation="MKTFDVQVQGAGIVGKSLALALARLGLKVALRQEARPPGQADDV
                     RAYALNPASVGLLRSLKVWDALPAHAATAVYDMRVQGDAGAVLEFSAWEQRVGELAFI
                     TDAAVLERELAAALRFAPHITLTDGDVEASLVALCEGRDSAQREALGVAFERHDYGHR
                     AIAARLTAARPHQGIARQWFRAPDVLALLPFDAPRPAHSYALVWSLPNERAEALLAHS
                     EPAFEQELMEATQGAAGDLKLASARAAWPLQLGRAERWCGPGWVLLGDAAHVVHPLAG
                     QGLNLGLADVAALARVIAQRESWRDLGDERLLRRYARERAAPTWAMGEVTDGLLRLFS
                     HESPALVELRNRGLTLVNRFPPVKRWLTAQALGS"
     gene            3533..4387
                     /locus_tag="VF308_16335"
     CDS             3533..4387
                     /locus_tag="VF308_16335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007853204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC N-terminal beta barrel domain-containing
                     protein"
                     /protein_id="HEX7438273.1"
                     /translation="MSDVTVRVQTLHVHPVKSCAGTEVTEALLIETGFEFDRAWMVVD
                     GAGEFVTQRELSRMALVRPTLKTFEMVLRAPGMLALHVALDAVEKPLSASIWGEQVAA
                     YDMGDLSARWFSQFLGRELRLVRFDPEQKRLADSRWTGALAAETAFQDAFPLLVVSSA
                     SLAELNRRLAAAGHAAVTMARFRPNVVLEGLDAHGEDALDEIVFAADDGPIRLRLVKP
                     CARCPIPDVDPATGMPGHAVGDALARYRADPRRDGQITFGMNAVVVEGIDRALRIGMS
                     GSAGHRFD"
     gene            4432..>4785
                     /locus_tag="VF308_16340"
     CDS             4432..>4785
                     /locus_tag="VF308_16340"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEX7438274.1"
                     /translation="MHRLRSWQLFAICVLTWGTTWHAVTYQVAAAAPEVGVALRFGLA
                     GSLVLGACLLRGLPLRFTCRDHALLALQGAFLYGVSYLCVYYAERHVASGLVAVGYSA
                     SPLITGLGARALFGTS"
BASE COUNT          687 a         1634 c         1639 g          825 t
ORIGIN      
        1 acccacgacg ccgacggcga gatcaagggc ctgaacgagt ttcccgaccg acatccgccc
       61 gtcctgccgc tcttcttcgc cttccggctg atggtcggca tgggcgtcct gatgctgctc
      121 gcgagctggg gcggatggtg gctctatcgg cgtgccggct ggcgcgtcga gctcctgccg
      181 cgcccgctgc tgcgggtgtt cgccgcaatg acgttcgcgg gctggatcgc gaccgtggcc
      241 ggttgggtcg tgaccgagat cggacgccag ccgtacatcg tgcacggcct gatccgcacc
      301 gccgacgtcg cctcgaagat cggcgcgccg ctgatcgcga cgacgcttgc gctctacgtc
      361 acgctctacc tcgcgctgat cgtcgcctat atcgcggtgc tgaagtacat ggctgaaaaa
      421 cccgaggaag cgctggacgc gcacgcgcgc gaccgcgcgg cgacgccgcc cgacgccgtc
      481 acgccgccgc tcgcgaccgc acccgggagc cagacatgaa cgtcatgacc ttcgaccaga
      541 tgctgccgat catcttcatg gcgctgatgg gcctggcgat gctcgtctac gtggtcagcg
      601 acggttacga cctcggcgtc ggcatgctga tgccgcgcgc gaacgaggcc gagaaggacg
      661 tgctgatcgc ctcgatcggc ccgttctggg acgcgaacga aacctggctc gtgctcggcg
      721 tcggcatcct gctgacctgc ttcccgaagg cgcacggcct ggtactcacc gagctctacc
      781 tgccggtggc gctgatgctg atcgggctcg tgctgcgcgg cgtcgccttc gacttccgcg
      841 tcaaggccaa ggcaagccac aagagcacct gggaccggct cttcttcgcc ggctcgaccc
      901 tcgccgcgac ttcgcagggc tggatgctcg gccgctacgt cagcggcttc ggcgcgggct
      961 ggaactaccc gctcttcgcc gccgcgatcg ccgccgcgct gcccgcggcg tatgtgctgc
     1021 tcggtgccct gtggctcgtg atgaagaccg aaggcgacct tcagcagaaa gcgatcggct
     1081 gggcccggct cgcctggccg cccgtcgtcg gcggactcat cctgatctcg atggccacac
     1141 cgtggatcag ccggaccgtg cgcgagcgct ggttcgtgct tcccgaattc atcgcgctga
     1201 tggcgattcc gctcatgacc ggcgtcgcgc tctacgcggt gcgcgcgctg ctctcgaccc
     1261 gggtcgtgcg cgggccgtac agctggctgc cgttcgtgtt gatgatcggc gtgttcctgc
     1321 tcggcttcct cggccttgcg tacagcatct atccgtacgt cgtgatcgac cgcctgacga
     1381 tctggcaggc ggcgagcagc ccgggagcgc tcaagttcat cctcgtcggc gtcgtgatcg
     1441 ccgtgcccgc catcgccggc tatacggtgt tttcgtaccg ggtcttcagg ggcaagaccg
     1501 cagagctgcg ctatgcgtga ggatctcgcg ctgctcgcga gatcccgccg ggtctcggcg
     1561 agctgctgca agggtcaaca gaccaggcag cagcctctca gctcttggcc cggctcgcga
     1621 ccagcaactg ctcgatctgc gccgcgttga gagcacccgg cttgtgggtg ccgtcctcga
     1681 agacgaggcc gggcgtgccg cggatgcgat gcttttggcc cagcgcgaag ttgcgctgca
     1741 gcgccgaaga gtcgcacggc gcggtgctga ccggtatcga ggcgccttcg atcatccact
     1801 cacgccagac cttggtgctg tccttcgcgc accagatgtt gcgcgccttg tcgggcgaat
     1861 cgccaccgag gatcggatag aggaaggtgt agacggtgac gtccttcacc tgctgcagat
     1921 ccttctcgaa cttcttgcag tagccgcagt tcggatcggc aaagacgacg agcttgcgcg
     1981 cgccgctgcc ctgcttccag acgatcgcgt cgcgcagcgg cagcgccgcg aaatcgatcg
     2041 ccgtcagctt tgcgatgcgc gcttcggtca ggttggtgcg ggtccgcgtg tcgaccagct
     2101 gcccttcgaa gagatggttc ccctgctcat cggtgtaata cacgtcggcg cccatgcgca
     2161 gctcgtagat gccggggatc gaggtcttgg tgacctcgtc gatcttcggc aactcgggca
     2221 ggcgctcggc caggttcttg cggatcgtcg cttcctgtgc cacggcacac tgggcgaaga
     2281 gcgcgaccgc gagcgacgcg acgagggaaa cgaggtgctt gtgcatgaag agctttcagg
     2341 agccgagcgc ctgggcagtg agccagcgct tgacgggagg aaatcgattg acgagagtca
     2401 gtccgcgatt gcgaagttcc acgagcgcgg gcgattcatg tgaaaacagg cgcagcaggc
     2461 cgtcggtgac ctcgcccatc gcccaggtcg gggcggcgcg ttcgcgcgca tagcggcgca
     2521 gcagccgctc gtcaccgagg tcgcgccagc tttcgcgttg cgcaatgacc cgggcgagcg
     2581 cggccacatc cgcgaggccg aggttcaggc cctggcccgc gagcgggtgc accacgtgcg
     2641 cggcgtcgcc gagcagcacc cagccggggc cgcaccagcg ttcggcacgg ccgagctgca
     2701 ggggccaggc ggcgcgcgcc gaagcgagct tcagatcgcc cgccgcgccc tgcgtggctt
     2761 ccatcaattc ctgctcgaaa gccggttcgc tgtgagccag gagcgcctcg gcgcgctcgt
     2821 tgggcaacga ccagaccagg gcgtaggaat gcgcgggccg cggcgcgtcg aagggcagca
     2881 gcgccagcac gtcgggggcg cggaaccact ggcgcgcgat cccctggtgc ggccgcgcgg
     2941 cggtgaggcg ggccgcgatg gcccgatggc cgtaatcgtg gcgctcgaag gcgacgccga
     3001 gcgcctcgcg ctgtgccgaa tcgcgccctt cgcagagcgc gacgagcgac gcctcgacat
     3061 cgccatcggt cagcgtgatg tgcggcgcga aacgcagcgc cgccgcgagc tcgcgctcga
     3121 ggacggcggc atcggtgatg aaggcgagtt cgccgacgcg ctgctcccac gccgagaact
     3181 ccagcaccgc gccggcgtcg ccttgcaccc gcatgtcgta gaccgcggtg gcggcatgcg
     3241 ccggcaatgc gtcccagacc ttcaggctgc gcagcagccc gaccgacgcc ggattcaggg
     3301 cataggcccg cacatcgtcg gcttggccgg gcgggcgagc ctcctgccgc agcgcgacct
     3361 tcaagccgag acgggcgagc gccagcgcca ggctcttgcc gacgatgccg gcgccctgca
     3421 cctgcacatc gaacgttttc atccccggat tgtaaggatt cgccggaccc ggccacgcgc
     3481 agcgatgcgg gcacaattcc actcttccca ggtttcgcga ggatcgagga cggtgagcga
     3541 tgtgactgtt cgcgtgcaaa cgctgcacgt ccacccggtg aaatcgtgtg ccggcaccga
     3601 ggtcaccgag gcactgctga tcgagaccgg gttcgagttc gaccgcgcct ggatggtcgt
     3661 cgatggcgcc ggcgagttcg tcacgcagcg cgagctgtcg cgcatggccc tcgtgcggcc
     3721 gacgctgaag accttcgaga tggtgctgcg ggcacccgga atgctggccc tgcacgtggc
     3781 cctcgacgcg gtcgaaaagc cgctttccgc aagcatctgg ggcgagcagg tcgcggctta
     3841 cgacatgggc gacctgagcg cacgctggtt cagccagttc ctcggccgtg agctgcgcct
     3901 ggtgcgtttc gaccccgagc agaagcgcct cgccgactcg cgctggaccg gcgcgctggc
     3961 ggccgagacc gcgttccagg atgcctttcc gctcctggtc gtctcgagcg catcgctcgc
     4021 cgagctgaac cggcgcctgg cggcggcggg ccacgccgcc gtgacgatgg cgcgctttcg
     4081 cccgaacgtc gtgctcgaag ggctcgacgc gcatggcgaa gacgcgctcg atgagatcgt
     4141 cttcgccgcg gacgacgggc cgatccgcct caggctggtc aagccgtgcg cgcgctgccc
     4201 gattcccgat gtcgatcccg ccacgggcat gcccggccat gccgtcggcg acgcgctggc
     4261 gcgctaccgc gccgacccgc gccgcgacgg ccagatcacc ttcggcatga acgcggtcgt
     4321 cgtcgagggc atcgaccggg ccttgcgcat cgggatgtcg gggagcgccg gtcatcgctt
     4381 cgattaacgc ttcgattgac gcttcgatgc agcgttgcgg ctgaggtctc catgcaccgc
     4441 ctcaggagct ggcagctctt cgccatctgc gtcttgacct ggggcacgac gtggcatgcg
     4501 gtcacgtatc aggtcgcggc ggctgcgccg gaggtcgggg tcgcgctgcg gttcgggctt
     4561 gccggaagcc tcgtcctcgg cgcgtgcctg ttgcgcggtc tgccgttgcg cttcacctgc
     4621 cgcgatcatg ccttgctcgc cctgcaaggc gcgttcctgt atggagtctc ctacctctgc
     4681 gtgtactacg cagagcgcca tgtcgcttcc gggctggtcg cggtcggcta ttcggcttcg
     4741 ccactgatca ccgggctggg tgcgcgtgcg ctgttcggta cttcg
//
LOCUS       DASVHM010000886         3331 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_281140, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000886 DASVHM010000000
VERSION     DASVHM010000886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3331
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281140"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VF308_16345"
     CDS             <1..255
                     /locus_tag="VF308_16345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438275.1"
                     /translation="DFRMVRDGEDGATAPRTRRERAGDKALTAAEELAAVKDVDRAVR
                     KATKAKPRGAPAASPHPARAAKSAARKSGGRLATKSPRRH"
     gene            342..1250
                     /locus_tag="VF308_16350"
     CDS             342..1250
                     /locus_tag="VF308_16350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012204389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX7438276.1"
                     /translation="MTLRFDKRVAIVTGAGGGLGRQHALALAARGAKVVVNDLGGTID
                     GNGGTPTAALAVVEEIRAAGGEAIASGASVTDAAAVQAMVAAAMQAWGRVDILVNNAG
                     ILRDKSFAKMELADFRLVVEVHLMGAVHCSKAVWDIMRAQNYGRIVMTTSSTGLFGNF
                     GQSNYGAAKMALVGLMHTLSIEGAKHDIRVNCLAPTAATRMTENLMPEAVLKLLEPGA
                     VSPGLLALVGEDAPTRTILCAGAGSFERAHISLTQGVFIGHPDDAAEQVVARFEAISD
                     QAGQTVPESGTAQGTLEVGKAMRALG"
     gene            complement(1252..2769)
                     /locus_tag="VF308_16355"
     CDS             complement(1252..2769)
                     /locus_tag="VF308_16355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015912861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEX7438277.1"
                     /translation="MRRVQSTPGNLPLFCTAGTRAIEARATAALPAHTLMERAGTAVA
                     RLAIALAPHSRRIWIAAGPGNNGGDGLEAALCLRQDGRQAGVMLLGDPARLPEDAKAA
                     LARAQAGGVAIGSTAEGLGPHDLAIDALLGIGGSRAPEGALGEAVRQLNALACPVLAI
                     DVPSGLDTDTGQPFGAACVTAQHTLALLTAKPGLFTAAGRDHAGIVWLDRLGIDADAD
                     SADAWLVGTGSSDLPAHSRPFAAHKGRFGDVTVVGGAAGMTGAALLAARAAHAAGAGK
                     VYVCLVGASAATPDHDPVRPELMFRPSWCEAPPDVLAAATVVCGCGGGDAVRQVLPRL
                     LSLVRKLVLDADALNAIGADPGLQAAVRARAGRGLQTILTPHPLEAARLLACTTAEIQ
                     ADRLRAARALAERFAATAVLKGSGSVIAAPGRIPAINATGNASLATAGSGDVLAGWLG
                     GLWAQQPGAPGSADGFEVAVQAVAEHGAAAEPQRPGALRAGDLVEALHRRLRRGR"
     gene            2862..>3331
                     /locus_tag="VF308_16360"
     CDS             2862..>3331
                     /locus_tag="VF308_16360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HEX7438278.1"
                     /translation="MKRFVVAALTTVALAGGAHAQQFFRIGTGGTAGTYYPVGGMIAN
                     AVSQPGKIIVTAQASNGSVANVTAIAGGGLESGFTQADVATWAQTGTGVYEGKTKVPE
                     LRLIANLSPESVHLVARKGAGIKTVFDLRGKRVALDEPGSGTLVDARLILAAYGL"
BASE COUNT          501 a         1157 c         1223 g          450 t
ORIGIN      
        1 gacttccgca tggttcgtga cggcgaagat ggcgccaccg cgccgcgcac gcgccgcgag
       61 cgcgccggcg acaaggccct gacggcagcc gaagagctcg cggccgtcaa ggacgtcgac
      121 cgtgcggtgc gcaaggcgac gaaggcgaag ccgcgcggcg cgccggcggc ctcgccgcac
      181 ccggcgcgcg cggccaagtc ggcggcgcgc aaatcgggcg gacggctcgc gaccaagtca
      241 ccgcgccggc attgacgcgc gcgccggccg cactcgcgct cagcgcgggc gtgagcttgc
      301 ggctcccaca ctttcgcttt ttcaaaaccc atggagatgg catgaccctt cgattcgaca
      361 agcgcgtggc aatcgtgacg ggtgcgggtg gcggcctcgg tcgccaacac gcgctcgccc
      421 tggcggcgcg cggtgccaag gtggtggtaa acgatctagg cggcacgatc gacggcaacg
      481 gcggcacgcc gacggctgcc ctcgccgtcg tcgaggagat tcgtgccgcc ggcggcgagg
      541 cgatcgcaag cggggcctcg gtcaccgatg cggccgccgt gcaggcgatg gtcgcggcgg
      601 cgatgcaggc gtggggccgc gtcgacatcc tggtcaacaa cgccggcatc ctgcgcgaca
      661 agagcttcgc gaagatggag ctcgccgatt tccggctcgt cgtcgaagtc cacctgatgg
      721 gtgcggtcca ttgcagcaag gccgtgtggg acatcatgcg ggcgcagaac tacggccgca
      781 tcgtgatgac gacttcgtcg acgggtctgt tcggcaactt cggccagtcg aactacggcg
      841 ccgcgaagat ggcccttgtc gggctgatgc acacgctgtc gatcgagggt gcgaagcacg
      901 acatccgggt caactgcctc gcgccgaccg cggcgacgcg gatgaccgaa aacctgatgc
      961 ccgaggcggt gctcaagctt ctcgagccgg gtgccgtgtc acccggcctg ctcgctctgg
     1021 tgggcgaaga tgcgccgacc cggacgattc tgtgtgccgg ggccgggtcg ttcgagcgcg
     1081 ctcatatctc cttgacgcaa ggggtcttca tcggccatcc ggacgacgcc gccgagcagg
     1141 tcgtggcacg cttcgaggcg atctcggatc aggccggcca gaccgtgccg gaaagcggca
     1201 ccgcgcaagg cacgctcgag gtcggcaagg cgatgcgcgc gctcggctga ttcagcgccc
     1261 gcgccgcagc cgccgatgga gcgcctcgac cagatcaccg gcacgcagcg caccgggccg
     1321 ctgcggctcg gccgcggcac cgtgttcggc gacggcttgc acggcgactt cgaacccgtc
     1381 tgcggatccc ggcgcgcccg gctgctgggc ccagaggccg ccgagccagc cggccagcac
     1441 atcgccgctc ccagccgtcg cgagcgaggc attgccggtc gcgttgatgg ccgggatccg
     1501 gccgggggcg gcgatcacgc tgcccgaacc cttcagcacg gccgtcgcag cgaagcgctc
     1561 ggccagtgcg cgcgcggcgc gcaggcggtc ggcctggatc tcggcggtcg tgcacgcgag
     1621 cagacgcgcg gcttcgagcg gatgcggcgt gaggatggtc tgcagaccac gcccggcgcg
     1681 tgcccggacg gcggcttgca ggccggggtc ggcgccgatc gcattcaacg cgtcggcgtc
     1741 gagcacgagc ttgcggacca gactgagcag gcgcggcagc acctgccgca ccgcatcgcc
     1801 gccgccgcat ccgcagacga ccgtcgccgc ggccagcacg tcaggcggcg cctcgcacca
     1861 gctgggccga aacatcagtt ccggacgaac cgggtcgtgg tctggcgtgg ccgcagacgc
     1921 accgacgagg cagacgtaga ccttcccggc tcccgccgca tgtgcggcgc gtgccgcgag
     1981 cagcgccgca ccggtcatgc cggcggcgcc accgacgacc gtgacatcgc cgaaacggcc
     2041 cttgtgcgcg gcgaaagggc gcgagtgtgc ggggagatcc gaactgccgg tgccgacaag
     2101 ccacgcgtcg gccgaatcgg cgtcggcatc gatgcccagg cgatcgagcc agacgatgcc
     2161 ggcgtggtcg cgcccggccg cggtgaagag accgggcttg gccgtcagga gcgcgagcgt
     2221 gtgctgcgcg gtcacgcagg ccgcgccgaa cggctggccg gtatcggtgt cgaggccgga
     2281 gggcacgtcg atcgcgagca ccgggcaggc gagggcattg agttgccgga ccgcctcgcc
     2341 gagcgcacct tcgggcgcgc gcgagccgcc gatgccgagc agggcgtcga tcgcgagatc
     2401 atggggaccg aggccttcgg ccgtgctgcc gatcgcgacg ccgcccgctt gcgcgcgggc
     2461 cagcgcggcc ttcgcgtctt cgggcaggcg tgccgggtcg ccgagcagca tcacaccggc
     2521 ctgccggcca tcttggcgca ggcagagcgc ggcttcgagt ccatcgccgc cgttgttgcc
     2581 ggggcctgcc gcgatccaga tccggcgcga atgcggcgcg agcgcgatcg cgaggcgcgc
     2641 gaccgccgtc ccggcgcgtt ccatcagagt gtgggccggc agcgctgcgg tcgcgcgcgc
     2701 ctcgatcgcg cgcgtgcccg ccgtgcaaaa gagcgggagg ttgccggggg tcgactggac
     2761 gcggcgcatg ctcggacggg atcgggtttc tcagtcttgg acggtgcctt cgattgtggt
     2821 tcactgacgc caagtttcca acgcacgagg agcagcgcac gatgaaacgc tttgtggtgg
     2881 ccgccttgac gaccgtggcg ctggccggcg gcgcgcacgc gcagcagttc tttcggatcg
     2941 gcaccggtgg caccgcgggc acgtactatc cggtcggcgg catgattgcc aatgcggtct
     3001 cgcagcccgg caagatcatc gtcaccgcgc aagccagcaa cgggtcggtc gccaacgtca
     3061 ccgcgatcgc cggcggcggg ctcgaatcgg gcttcacgca ggccgatgtc gccacctggg
     3121 cccagaccgg aaccggcgtc tacgaaggca agaccaaggt gccggaactg cgcctcatcg
     3181 ccaacctctc ccccgaaagc gtccacctcg tcgcgcgcaa gggcgccggc atcaagaccg
     3241 tgttcgatct gaggggcaag cgcgttgcgc tcgacgaacc gggttcgggg acgctggtcg
     3301 atgccaggct gatcctcgcc gcgtacggcc t
//
LOCUS       DASVHM010000887         2350 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_64287, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000887 DASVHM010000000
VERSION     DASVHM010000887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64287"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..564
                     /locus_tag="VF308_16365"
     CDS             <1..564
                     /locus_tag="VF308_16365"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX7438279.1"
                     /translation="LKANGLTGRWRDELLAVGDAHGERLGEVERAAARPLGITTHAAH
                     LVGRTPDGDFWVQQRAFDKATDPGLWDTMVGGLVAAGETVATTLARETAEEAGLAVEA
                     LQGLEPAGRITIRRPVADGYMVEHIEIFEALVPPPSRPVNRDGEVERFECLAPDALLE
                     RLRAGAFTLEAALILVASLERRGLLDR"
     gene            812..>2350
                     /gene="fusA"
                     /locus_tag="VF308_16370"
     CDS             812..>2350
                     /gene="fusA"
                     /locus_tag="VF308_16370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEX7438280.1"
                     /translation="MALTVPESIASIRTLALVGQAASGKTSLAEALLCKAGAIGAPGS
                     LERGSTVSDFDPMERRVLHSLHSALMHLQHQDVRIHLIDTPGYPDFLGQSMTALEAVE
                     TAAVVINAATGIEMMSTRMMEWARQRGLDRIVIVNKIDAQGVDLPGLLAQIQAAFGKE
                     CLPLNLPVGGGTRVVDCFFNASAPAGQEPDFSSVEEAHRALVEQVVEVDPDFVERYLN
                     EGDVDPRELHAPLEQALREGHLIPVCFVSARSGAGVAELLDVIVRLLPNPTEGNPPEF
                     LKGEGEEARPLRAEPDPARHVLAHVFKITQDPFVGKMGIFRIHQGTVTRNSQLFIGDG
                     RKPFKVGHLLMLQGKDHVEVASAGPGDLCAVAKVDEMHFDAVLHDAAEDDHIHLKPLD
                     FPVPVHGIAIEPKRRGDEQRLWDILQKLVDEDPCLRVEHVAATNETVVYGLGELHLRT
                     LLDRLTELHRCEVATRPPRIAYRETVTAPAEGHHRHKKQTGGAGQFGEVFLRIEPLPR
                     GAGKD"
BASE COUNT          378 a          827 c          795 g          350 t
ORIGIN      
        1 ctgaaggcga acggcctgac cggccgctgg cgcgacgagt tgctcgccgt cggcgacgcg
       61 cacggcgaac gactcggcga ggtcgaacgt gccgcggcgc gcccgctcgg catcaccacc
      121 catgcggcgc acctcgtcgg ccgcacaccc gatggcgact tctgggtcca gcagcgcgcc
      181 ttcgacaagg ccaccgaccc gggcctgtgg gacacgatgg tgggcgggct cgtggcggcc
      241 ggcgaaacgg tcgccaccac gctggcccgc gagaccgccg aagaagccgg gctcgccgtc
      301 gaggcgttgc aaggcctcga gccggctggc cggatcacga tccgccggcc ggtcgcggat
      361 ggctacatgg tggagcacat cgagattttc gaagccctcg tgccgccgcc gtcgcggccg
      421 gtcaatcgcg atggcgaggt cgagcgcttc gagtgcctcg ccccggatgc gctgctcgaa
      481 cgtctgcgcg ccggagcgtt cacgctcgaa gccgcgctga tcctggtcgc gtcgctcgag
      541 cgccgcgggc ttctcgaccg ctgaatccga cgtggttccc cgaagccgcc gcgaccttcg
      601 cctcgcatcg gagggctgga tcgcggattt cctgcccgac ccgaccaagg ggatggtcga
      661 agcgtcgaca gggcagcgcg cggccgcgat ccagggagcg ttgttgagcc gcttcggccg
      721 gcacttgtgg cgctggagcg catcccttac ccttcggtga cgagcctggc gcccatgccg
      781 tggtgcggct cgcccgacct aggagagaac tttggctttg accgttcctg aatcgatcgc
      841 ttcgatccgc accctagccc ttgtcggtca ggcggcatcg ggcaagacga gcctcgccga
      901 agcgctgctc tgcaaggccg gcgcgatcgg cgcgccgggc agcctcgagc gcggctccac
      961 cgtgagcgac ttcgacccga tggagcgccg cgtgctgcac tcgctccatt cggcgctgat
     1021 gcacctgcaa catcaggatg tgcgcatcca cctgatcgac acgccaggct atcccgattt
     1081 cctcggccag tcgatgaccg cgctcgaagc ggtcgagacc gcggcggtcg tcatcaacgc
     1141 cgcgaccggc atcgagatga tgagcacgcg catgatggaa tgggcgcgcc agcgcggcct
     1201 cgaccgcatc gtcatcgtca acaagatcga cgcccagggc gtcgatctgc ccggcctgct
     1261 ggcacagatc caggcggcgt tcggcaagga gtgcctgccc ttgaatctcc cggtcggcgg
     1321 cggtacacgg gtggtcgact gcttcttcaa tgccagcgcg ccggccgggc aggagcccga
     1381 tttctcgagc gtcgaggagg cgcaccgggc cctcgtcgag caggtggtcg aagtcgaccc
     1441 cgatttcgtc gagcgctacc tcaacgaagg cgacgtcgat ccgcgcgaac tccacgcgcc
     1501 gctcgagcag gcgctgcgcg aaggccacct catcccggtc tgtttcgtga gcgcgcgcag
     1561 cggcgccggc gtggccgagt tgctcgacgt catcgtgcgt ctgctgccga acccgaccga
     1621 aggcaatccg ccggagttcc tgaagggcga gggcgaagaa gcccgcccgc tgcgcgccga
     1681 gccggacccg gcgcgccacg tgctcgccca cgtgttcaag atcacccagg accctttcgt
     1741 cggcaagatg gggatcttcc ggatccacca gggcaccgtc acgcgcaaca gccagctctt
     1801 catcggcgat ggcaggaagc ccttcaaggt cggccacctg ctgatgctgc agggcaagga
     1861 ccacgtcgag gtggcaagcg ccgggccggg cgacctctgc gcggtcgcga aggtcgacga
     1921 gatgcacttc gacgccgtcc tgcacgacgc cgcggaagac gaccacatcc acctgaagcc
     1981 gctcgacttt ccggtgccgg tgcatggcat cgcgatcgaa ccgaagcgcc gcggcgacga
     2041 gcagcggctc tgggacatac tgcaaaagct cgtcgacgaa gacccgtgcc tgcgggtcga
     2101 gcacgtcgcg gcgacgaacg agacggtggt ctacggtctc ggcgagctgc acttgcgcac
     2161 gctgctcgac cgcctgaccg aattgcaccg ctgcgaggtc gcgacgcgcc cgccgcgtat
     2221 tgcctaccgc gagaccgtca ccgcccccgc cgaaggccat catcggcaca agaagcagac
     2281 gggtggcgcc ggccagtttg gcgaggtctt cctgcgcatc gagcccttgc cgcgcggggc
     2341 cggcaaggat
//
LOCUS       DASVHM010000888         3546 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1367567, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000888 DASVHM010000000
VERSION     DASVHM010000888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3546
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1367567"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..246
                     /locus_tag="VF308_16375"
     CDS             <1..246
                     /locus_tag="VF308_16375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011616228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase family protein"
                     /protein_id="HEX7438281.1"
                     /translation="RRVGDGIALQGNLDPSVLFAPPERIRAEVTTALESVAGASLDGH
                     VFNLGHGISQFTPPDHVSALVDAVHDVSRRLRLPTAA"
     gene            603..2690
                     /locus_tag="VF308_16380"
     CDS             603..2690
                     /locus_tag="VF308_16380"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019562003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEX7438282.1"
                     /translation="MPHQTLLRVAVDSPQHADLAEPLTYASESKLAPGTLVRVPFGRR
                     EVTGIVWPDAPSGAEPNDVRLVKDALTAMPPLTQAWCALVAFAAGYYQRGIGEVALAV
                     LPPELRKLGNVQLANRRAKLEKTLVGSAPATKGEGGTLPVLSEEQAKALDAIGAGGPG
                     AGATVLLHGVTGSGKTEVYLRAAANALDAGRQALVLVPEINLTPQLEARFAERFAGRH
                     IVSLHSGLTPAQRLRNWLAAHLGLADLVLGTRLAVFASMPRLGLIVIDEEHDPSYKQQ
                     EGARYSARDLAVFRGKLEGATVLLGSATPSLESWQRANQGRYVRLALAARIGGGALPA
                     VRLVDMNRAPKATGGSATLSPLLIDALNRRLASGEQSLVFLNRRGYAPVLHCADCGWK
                     SGCPNCSAWRVFHKLDRTLRCHHCGFTERVPRACPDCGNLDIAPIGRGTERLEEQLAA
                     LLRGPDGRPPRIARIDADSTRAKGALEASLGAVHAGDVDVLVGTQMVTKGHDFRRIKL
                     VAAVNPDASLFSSDFRAPERLFALLMQAGGRAGRDAQQAARSEMWVQTWHPTHPLYQA
                     LIRHDFGAFAESQLKEREAAGLPPWSHLAMLRAEARTPEAARAFLHGATERAVGLPGA
                     DAVTVYPPVPMGVARVANVERMQMLVESPSRRALQGFLTAWLAALHEWRRDNRGAEQR
                     ILRWAVDVDPLSI"
     gene            complement(2695..>3546)
                     /locus_tag="VF308_16385"
     CDS             complement(2695..>3546)
                     /locus_tag="VF308_16385"
                     /inference="COORDINATES: protein motif:HMM:NF015642.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecA family protein"
                     /protein_id="HEX7438283.1"
                     /translation="FQVRPCMSPRMRRGSRAGVGLDSLARWRCPPRRDALTRSESRPG
                     TSPSFVFAPGGDNPCMSSRAPRPGRRAAHAARRPLGDAEIGELQALLDAVPAPLDPLD
                     VSMLDGFLCGVLVQPEPVAPARWLRHVADADGRPLPAGFDAGRLHALVGRRHAELDDA
                     IARRQWFDPWVFELDDPECVPAPDRRDNETAPAIDAVVPWVAGFATALELFPALMRCP
                     AAALNEPLALLYRHLPAEDLEDADDLLVEIDALEPAVDLGEAVEGLVRATLLLADVAR
                     PLRAPRR"
BASE COUNT          560 a         1266 c         1192 g          528 t
ORIGIN      
        1 cggcgcgtgg gcgatggcat cgcgctgcag ggcaacctcg atccgagcgt cctgttcgcg
       61 ccgccggagc gcatccgcgc cgaagtgacg actgccttgg agagcgtcgc cggcgccagc
      121 ctggacggcc atgtgttcaa cctcggccac ggcatcagcc agttcacccc gcccgatcac
      181 gtctcggcgc tggtggacgc cgtgcacgac gtctccagac gcttacgtct gccgaccgcc
      241 gcgtgatttc ttcacgctcc cggagcttgc tttttgttcg gtgagtgagt gctcagggct
      301 tgacttatcc ccaaaacgct catgggatgc ttcatacgcg attcttgctg cagcgcgtca
      361 tcgacattcc cgcagcctca cctaagtcat tgatttgatt gaggcgatgg aattgctgag
      421 aaagcgggca tggaagcgga agcccacgta aatcaagcat ctcgggcggg cggaggcgag
      481 ttttgcacaa agttttccac aggctcagtg gaaaatcttg aaatgcttta aaaatcatcg
      541 ggttagcgct gttccttcca ttgatttcta ggttgccagt gtcgaatccc tctgtgccga
      601 cgatgccgca tcaaaccctg cttcgagtcg cggtggactc cccccaacat gccgacttgg
      661 cggagcctct cacctacgca agtgagtcca agctagcgcc gggaaccctc gtgcgtgttc
      721 cattcggacg gcgcgaagtg accgggatcg tctggcccga cgctccctcg ggggccgagc
      781 ccaacgacgt ccgcctcgtc aaggacgccc tgacggctat gccgccgctg acgcaggcgt
      841 ggtgcgcatt ggtcgcattc gctgcgggct attaccagcg cggcatcggc gaggtcgcgc
      901 tcgccgtcct gccgcccgag cttcgcaagc tcggcaatgt ccaactcgcg aaccggcgcg
      961 ccaagctcga gaaaaccctt gtcggctcgg cccctgcgac gaagggggag ggcggcacct
     1021 tgccggtcct gagcgaggag caggccaaag ccctcgacgc gatcggcgcg ggtggccccg
     1081 gcgcgggcgc gaccgtcctg ctccacggcg tcaccggcag cggcaagacg gaggtctacc
     1141 tgcgcgccgc ggcgaacgcc ctcgacgccg gccgccaggc cctcgtcctg gtgccggaga
     1201 tcaacctgac gccgcagctc gaagcgcgct tcgccgagcg ctttgccgga cgccatatcg
     1261 tctcgctgca cagcgggttg acgccggcgc agcgcttgcg gaactggctg gccgcgcatc
     1321 tcggcttggc ggacctggtg ctcggcaccc ggcttgccgt cttcgcctcg atgccgcgcc
     1381 tcggattgat cgtcatcgac gaggagcacg acccttccta caaacagcag gagggcgcgc
     1441 gctattcggc gcgcgacctc gccgtgttcc gcggcaagct cgaaggcgcc acggtcctgc
     1501 tcggctccgc caccccctcg ctcgaaagct ggcagcgcgc gaaccagggc cgctacgtgc
     1561 gcctcgccct cgccgcgcgg atcggcggcg gcgcactgcc ggcagtgcgg ctcgtcgaca
     1621 tgaaccgggc gccgaaggcc acaggcggca gcgcgacgct ttcgccgctg ctgatcgacg
     1681 ccttgaaccg gcggctcgcg agcggcgagc agagcctcgt cttcctgaac cggcgtggct
     1741 acgccccggt gctgcattgc gccgactgcg gctggaagag cggctgcccg aactgcagcg
     1801 cgtggcgtgt ctttcacaag ctcgaccgca cgctgcgctg ccaccactgc ggcttcaccg
     1861 agcgcgtgcc gcgcgcctgc cccgactgcg gcaatctcga catcgcgccg atcggtcgcg
     1921 ggaccgagcg gctcgaagag caactcgcgg ccctcctccg cggccccgat ggccgcccgc
     1981 cgcgcatcgc ccgcatcgac gccgacagca cgcgcgccaa aggggccctc gaagccagcc
     2041 tgggcgcagt acacgcgggc gatgtcgacg tgctcgtcgg cacgcagatg gtcaccaagg
     2101 gacacgattt ccggcgcatc aagctggtcg cggccgtcaa cccggatgcc tcccttttca
     2161 gcagcgactt ccgcgcaccc gagcgcctgt tcgccctgct gatgcaggcc ggcgggcgcg
     2221 caggaagaga cgcacagcaa gccgcccgca gcgaaatgtg ggtccagacc tggcacccga
     2281 cccatccgct ctaccaggcg ctcatccggc acgatttcgg cgccttcgcc gaaagccagc
     2341 tcaaggagcg cgaggcggcc ggcctgccgc cctggtcgca cctcgcgatg ctacgcgccg
     2401 aagcgcgcac gcccgaggca gcgcgcgcgt ttctgcacgg cgcgaccgaa cgcgccgtcg
     2461 ggctacccgg cgccgacgcg gtgacggtct acccgccggt gccgatggga gtggcccggg
     2521 tcgccaacgt cgagcgcatg cagatgctcg tcgagtcgcc ctcgcggcgc gcgctgcagg
     2581 gcttcctgac cgcgtggctt gcggccctgc acgagtggcg gcgcgacaac aggggcgccg
     2641 agcaacgcat cctgcgctgg gccgtggatg tcgatccgct atcgatctga gaacctatcg
     2701 gcgaggtgcc ctgagcgggc gcgcgacatc ggcgagcagg agcgtcgcgc gcaccagccc
     2761 ttcgacggct tcgccaagat cgacggcggg ctccagcgcg tcgatctcga cgagcaggtc
     2821 gtcggcgtct tcgagatcct ccgcggggag gtggcgatag agcagggcca gcggctcgtt
     2881 gagcgccgcg gcggggcagc gcatcagggc cggaaacagc tcgagcgcgg tcgcgaaccc
     2941 ggcgacccag ggaaccaccg cgtcgatcgc cggcgccgtc tcgttgtcgc gtcggtccgg
     3001 cgcgggcacg cactcggggt cgtccagttc gaacacccag gggtcgaacc actgccggcg
     3061 cgcaatcgcg tcgtcgagct cggcgtggcg gcgtccgacc agcgcatgca gtcgtcccgc
     3121 atcgaagccc gccggcaacg gccggccatc ggcgtcggcg acatggcgca gccagcgcgc
     3181 cggcgcaacc ggctccggct gcaccagcac gccgcacagg aagccgtcga gcatgctcac
     3241 gtcgagcggg tcgagcggcg cgggcacggc gtcgagcagc gcctgcagtt cgccgatctc
     3301 cgcatcgccg agcggccggc gcgccgcatg ggctgcacgg cggccggggc ggggcgcgcg
     3361 ggaagacatg catggattgt cgccgccggg cgcgaagacg aacgaaggcg aggtgcccgg
     3421 cctggactcc gatcttgtga gagcatcacg acgcggcggg caccgccacc gcgccaggga
     3481 gtccaatccc acaccagcgc gtgacccgcg cctcattctc ggagacatac atgggcgcac
     3541 ctgaaa
//
LOCUS       DASVHM010000889         1505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1294400, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000889 DASVHM010000000
VERSION     DASVHM010000889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1294400"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1148
                     /gene="sucA"
                     /locus_tag="VF308_16390"
     CDS             <1..1148
                     /gene="sucA"
                     /locus_tag="VF308_16390"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012747290.1"
                     /note="SucA; E1 component of the oxoglutarate
                     dehydrogenase complex which catalyzes the formation of
                     succinyl-CoA from 2-oxoglutarate; SucA catalyzes the
                     reaction of 2-oxoglutarate with dihydrolipoamide
                     succinyltransferase-lipoate to form dihydrolipoamide
                     succinyltransferase-succinyldihydrolipoate and carbon
                     dioxide; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HEX7438284.1"
                     /translation="LPANFKAHPLVEKVLADRAAMGRGEIRVDWGMGEHLAFASLVAS
                     GYAVRLSGEDSGRGTFTHRHAVLHDQNRERWDEGTYTPLEHVADGQAPFVVIDSLLSE
                     EAVLGFEYGYASAEPNTLVIWEAQFGDFVNGAQVVIDQFIASGEVKWGRANGITLMLP
                     HGYEGQGPEHSSARVERFMQLSADNNMQVVQPTSASQIFHALRRQMVRMFRKPLIIMT
                     PKSLLRAKDASSPLSDFTKGEFKTVIGEVSADVVAEKVRRVVVCSGKVYYDLVKARAE
                     RKVEVAILRVEQLYPFPHKAYAAEMKKYPNATEVVWCQDEPQNQGAWFFVQHYIHENM
                     AEGQRLGYAGRAASASPAVGYAHLHQEQQKALLEQAFGKLKGFVLTK"
     gene            1260..>1505
                     /locus_tag="VF308_16395"
     CDS             1260..>1505
                     /locus_tag="VF308_16395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012353125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEX7438285.1"
                     /translation="MAIVEVKVPQLSESVAEATLLQWKKRPGEAVALDEILVEIETDK
                     VVLEVPAPAAGVLAQLVKNDGDTCLAEEVIAKIDTEAV"
BASE COUNT          284 a          475 c          507 g          239 t
ORIGIN      
        1 cgctgccggc caatttcaag gcccatccgc tggtcgaaaa agtgctggcc gaccgggccg
       61 cgatgggccg cggcgagatc cgcgtcgact ggggcatggg cgaacacctg gccttcgcat
      121 cgttggtcgc cagcggctat gcggtgcgcc tgtcgggcga ggattcgggg cgcggcacgt
      181 tcacgcaccg gcatgccgtg ctgcacgatc agaaccggga gcgctgggac gagggcacct
      241 acacgccgtt ggagcacgtc gccgacgggc aggcgccgtt cgtggtcatc gactcgctgc
      301 tttccgagga agcggtgctc gggttcgaat acggctatgc cagcgccgag ccgaacacgc
      361 ttgtgatctg ggaagcgcag ttcggcgatt tcgtgaacgg cgcgcaggtc gtcatcgacc
      421 agttcatcgc ctcgggcgaa gtgaagtggg gtcgcgccaa cggcatcacg ctgatgctgc
      481 cgcacggcta cgaaggccag ggccccgagc attcgtcggc gcgcgtcgag cgcttcatgc
      541 agctctcggc cgacaacaac atgcaggtcg tgcagccgac ctcggcgagc cagatcttcc
      601 acgccctgcg gcgccagatg gtgcgcatgt tcaggaaacc cctgatcatc atgacgccga
      661 agtcgctgct gcgggccaag gacgcgtcgt cgccgctctc cgacttcacc aagggcgaat
      721 tcaagacggt catcggcgaa gtcagtgccg atgtcgtcgc cgaaaaggtc aggcgcgtcg
      781 tcgtgtgctc gggcaaggtg tactacgacc tagtcaaggc gcgcgccgag cgcaaggtcg
      841 aagtcgcaat cctacgcgtc gagcagctct acccgtttcc gcacaaggcg tacgccgccg
      901 agatgaagaa atacccgaac gcgaccgagg tcgtctggtg ccaggacgag ccgcagaacc
      961 agggcgcctg gtttttcgtg cagcactaca tccacgagaa catggccgag gggcagaggc
     1021 tcggctatgc cggccgcgcc gcatcggctt cgccggcggt cggctacgcc cacctgcacc
     1081 aggagcagca aaaggcgctc ctcgagcagg ccttcggcaa gctgaagggc ttcgtgctga
     1141 ccaaatagtt gtcatggcga tcgccttcgg cgtcgcaatg actcgctgcg tgcgaccgac
     1201 cttcggtcga tcgacttggc ggatgccgcg atgtgccggc gtgaaaacga gaacatgaca
     1261 tggctatcgt agaagtgaag gtgccccagc tgtcggagtc ggtcgccgag gcgaccctgc
     1321 tgcagtggaa gaagaggccc ggcgaggccg tcgccctcga cgaaatcctg gtcgagatcg
     1381 agaccgacaa ggtcgtcctc gaggtcccgg ccccggcggc aggcgtgctc gcccaactcg
     1441 tcaagaacga cggcgacacc tgcctggccg aggaagtgat cgcgaagatc gacaccgaag
     1501 cggtg
//
LOCUS       DASVHM010000890         4545 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_571386, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000890 DASVHM010000000
VERSION     DASVHM010000890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4545
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_571386"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /gene="carB"
                     /locus_tag="VF308_16400"
     CDS             complement(<1..534)
                     /gene="carB"
                     /locus_tag="VF308_16400"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014616818.1"
                     /note="four CarB-CarA dimers form the carbamoyl phosphate
                     synthetase holoenzyme that catalyzes the production of
                     carbamoyl phosphate; CarB is responsible for the
                     amidotransferase activity; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl phosphate synthase large subunit"
                     /protein_id="HEX7438286.1"
                     /translation="MPKRTDLRSILIIGAGPIVIGQACEFDYSGAQACKALREEGYRV
                     ILVNSNPATIMTDPEMADVTYIEPITWSMVEKIIAKERPDAVLPTMGGQTALNCALDL
                     HKHGVLQKYGVEMIGARKEAIDKAEDREKFKAAMSKIGLASARSAIAHSLEEALQVQA
                     VVGFPTIIRPSFTLGGTG"
     gene            complement(527..1702)
                     /gene="carA"
                     /locus_tag="VF308_16405"
     CDS             complement(527..1702)
                     /gene="carA"
                     /locus_tag="VF308_16405"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEX7438287.1"
                     /translation="MSPQLLPDHAQALLALADGTVFMGRSIGATGTTTGEVVFNTALT
                     GYQEILTDPSYCRQIVTLTYPHIGSYGTSAEDVESARVFAAGLVVKDVPARESNFRSG
                     ASLGEYLRRENTVGIAGIDTRRLTRLLRSGGAQNGCIVALAQGETVTPALVDGAIAQA
                     RATPGMAGLDLAKVVSVREPYEWKETTWALGRGYGSVKEPRWHVVAYDFGVKFNILRM
                     LAARGCRITVVPAETPAADVLAQKPDGVFLANGPGDPEPCDYAIAATREFIDRGLPTF
                     GICLGHQIMALAAGARTYKMKFGHHGANHPVKDLDSGRVSITSQNHGFAVDPESLPAT
                     LRPTHVSLFDGTLQGLAHVGKPAFCFQGHPEASPGPHDIGYLFDRFVASMARESANA"
     gene            2031..2720
                     /locus_tag="VF308_16410"
     CDS             2031..2720
                     /locus_tag="VF308_16410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009519580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEX7438288.1"
                     /translation="MDESLQTVNLGYAVPSVEQRNRVLRNTYWLLALSMVPTVLGAWI
                     GVSSGFMATMGVGMSFIVFMVGAFGFIYAIEKTKNSAAGVPVLLGFTFFMGLMLSRLI
                     GHVLGFANGTALIMVAFAGTGATFLGMATLSSLIKRDLSTMGKFLYIGAIMLLVAIIA
                     NIFLQSSALFVTIAVLMVGIFSAFIVYDLKRVRNGEETNYISATLNIYLDLYNIFQAL
                     LSLLGFAGSRD"
     gene            complement(2784..4196)
                     /locus_tag="VF308_16415"
     CDS             complement(2784..4196)
                     /locus_tag="VF308_16415"
                     /inference="COORDINATES: protein motif:HMM:NF039580.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEX7438289.1"
                     /translation="MTQLVAVRLWLLVVLVGLALFAALEWFLLPGVRWYFRRKVRRVM
                     NEISTRFKIELPEFKLTRRRALLDRLTSDQRVLAAVHQQVVESGVPRDVLVQRVRRYA
                     GEIVPAFNAYVYFRVGYWLAKTFAKMTYRVRLGYTDAAALAAIDPRSTVVFVMNHRSN
                     MDYVLVSFLAAERVALSYAVGEWARIWPLQGLIRAMGAYFVRRNSGDPLYRMVLQRYV
                     QMATEGGVPQAMYPEGGLTTDGRLREPKLGLLDYMLKGFDPAAQRDLVFIPVGINYDR
                     VLEDRSLLRKLDPAAAGVGLLRKLAILARFASRQSILAVLGRRYRHGYACVNFGTPVS
                     MRAYVEAHGVDFRALDDAGRRQPVAAVGKMLMARIGEVVPVLPVPLVASVLLRDDARP
                     ISELELKSAVQALMDGVEAAGGHVYVPRTDRDYALTVGLRMLTLRGLVHEHDGLFQAN
                     PRELTILRYYANSIAHLLVA"
     gene            complement(4193..>4545)
                     /locus_tag="VF308_16420"
     CDS             complement(4193..>4545)
                     /locus_tag="VF308_16420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase"
                     /protein_id="HEX7438290.1"
                     /translation="AAKASFAVRNLFEVTADDLVAFGNAAKWLIDPPREGAFAIAKAL
                     ADRCEAPADDASWRAPERIVYVSCNPATLARDAGLFVHRAGYRCAAAGVVNMFPHTAH
                     VESIVVFECQEAPQ"
BASE COUNT          690 a         1511 c         1590 g          754 t
ORIGIN      
        1 gccggtgccg ccgagcgtaa acgacggccg gatgatggtc gggaagccaa ccaccgcctg
       61 cacctgcaac gcctcttcga ggctgtgcgc gatcgccgag cgcgcgctgg cgagcccgat
      121 cttgctcatc gcggccttga acttctcgcg gtcctcggcc ttgtcgatcg cttctttcct
      181 ggcgccgatc atctcgacgc cgtacttctg cagcacgccg tgcttgtgca ggtcgagggc
      241 acagttgagc gcggtttgcc cgcccatcgt cggcagcacc gcgtcgggac gctccttggc
      301 gatgatcttc tcgaccatgc tccaggtgat cggctcgatg taggtgacgt cggccatctc
      361 cgggtcggtc atgatcgtcg ccgggttgct gttgacgagg atgacgcggt agccctcctc
      421 gcgcagcgcc ttgcacgcct gcgcgcccga gtagtcgaac tcgcacgcct ggccgatgac
      481 gatcgggccg gcgccgatga tcaggatcga gcggaggtcg gtgcgcttag gcattcgcgc
      541 tctcgcgggc catcgaggcg acgaagcggt cgaacaggta gccgatgtcg tgcggcccgg
      601 gcgaggcttc cgggtggccc tggaagcaga atgcgggctt gccgacgtgg gcgaggcctt
      661 gcagcgtgcc gtcgaagagc gagacgtggg tcggcctgag cgtcgccggc agcgattcgg
      721 gatcgaccgc gaagccgtgg ttctggctcg tgatgctgac ccggccgctg tccaggtcct
      781 tcaccggatg gttggcgccg tgatggccga acttcatctt gtaggttcgc gcgccggcgg
      841 cgagcgccat gatctggtgg ccgaggcaga tgccgaaggt cggcaggccg cgatcgatga
      901 actcgcgcgt cgccgcgatc gcgtagtcgc acggctccgg atcgcccggc ccgttggcga
      961 ggaaaacgcc gtcgggtttc tgcgcgagca cgtcggccgc cggcgtctct gccggcacga
     1021 cggtgatgcg gcagccgcgc gccgcgagca tgcgcaggat gttgaacttg acgccgaagt
     1081 cgtaggcgac aacgtgccag cgcggctcct tgacgctgcc gtagccgcgg ccgagcgccc
     1141 acgtcgtctc cttccactcg tacggctcgc gcacgctcac gaccttggcg aggtcgaggc
     1201 cggccatgcc cggcgtcgcg cgtgcctggg cgatcgcgcc gtcgacaagc gccggcgtga
     1261 ccgtctcgcc ctgagcgagg gcgacgatgc agccgttctg cgcgccgccg ctgcgcaaga
     1321 gcctcgtcag gcggcgcgtg tcgatgccgg cgatgccgac cgtgttctcg cgccgcaggt
     1381 actcgccgag cgaggcgccg ctgcgaaagt tcgactcgcg tgccggcacg tccttgacga
     1441 ccagtccggc ggcgaagact cgcgccgatt cgacgtcctc cgcgctcgtg ccgtagctgc
     1501 cgatgtgcgg ataggtgagc gtgacgatct ggcggcagta gctcggatcg gtgaggatct
     1561 cctggtagcc ggtgagcgcg gtgttgaaga cgacctcgcc ggtcgtcgtg cccgtggcgc
     1621 cgatcgatct gcccatgaac accgtgccgt cggcgagggc caggagggcc tgggcgtggt
     1681 cgggcagcag ttgcggggac acgggactcc gaatcggggc gcggggaccg gcgcggcggc
     1741 tgccggccgg ggaatcgccg tcggctgggc gaaccgggcg gccgcgacaa ccggcgtttc
     1801 gcgtcggctg aagcggtgca attgtagccg cctgcccggc gtcgacagcc tgtgctgccc
     1861 ggcgtcggcg gccttgaaag tcgccttctc ggcaccactt cgggcacatc ggcggccgcg
     1921 ccgatccact cgggcgctcg ggaggcgcgg tggctcacgt ggctgggaac tagaatcggc
     1981 gccgacactc tcagacagtt gtcactcgtc gtctttcctt cggaggatcc atggacgaat
     2041 ccctgcagac ggtcaaccta ggttacgcag tccccagcgt ggagcagcgc aaccgcgtgc
     2101 tgcgcaacac gtactggctg ctcgccctgt cgatggttcc cacggtgctc ggcgcctgga
     2161 tcggcgtttc gagcgggttc atggcgacga tgggcgtcgg catgagcttc atcgtcttca
     2221 tggtgggtgc cttcgggttc atctacgcca tcgagaagac caagaactcg gccgccggcg
     2281 ttccggtgct gctcggcttc acattcttca tgggcctgat gctgtcgcgc ctgatcggcc
     2341 acgtgctcgg ctttgccaac ggcacggcgc tgatcatggt ggcgtttgcc ggcaccggcg
     2401 ccaccttcct cggcatggcg acgttgtcgt cgctgatcaa gcgcgacctg tcgacgatgg
     2461 gcaagttcct ctacatcggc gcgatcatgc tgctggtggc gatcatcgcc aacatcttcc
     2521 tgcagtcgag cgcgctcttc gtgacgatcg cggtcctgat ggtcggcatc ttctcggcct
     2581 tcatcgtcta cgacctgaag cgcgtccgca acggcgagga aacgaactac atcagcgcga
     2641 ccttgaacat ctacctggac ctgtacaaca tcttccaggc gctgctctcg ctgctcggct
     2701 tcgccggcag ccgggattga cgacgcttcg ctgaaatcta aacggggccg ttggccccgt
     2761 tttcttttgg gtcccgcgtc gggctatgcg acgagcaggt gggcgatcga gttggcgtag
     2821 taacgcagga tcgtcagctc gcgcgggttg gcctggaaca ggccgtcgtg ctcgtgcacc
     2881 aggccgcgca gggtcagcat gcgcaggccg acggtgagcg cgtagtcgcg gtcggtgcgc
     2941 ggcacgtaga cgtggccgcc ggcggcctcg acgccatcca tcagcgcctg caccgccgac
     3001 ttcagctcga gctcggagat cggccgggcg tcgtcgcgca gcagcacgct cgcgactagc
     3061 ggcacgggca ggaccgggac gacctcgccg atccgcgcca tcaacatctt gccgacggcg
     3121 gcgacgggct ggcggcggcc ggcatcgtcg agggcgcgga agtcaacgcc gtgcgcctcg
     3181 acgtaggcgc gcatcgacac cggcgtcccg aagttgacgc aggcgtagcc atgccgatag
     3241 cgccggccga ggacggcgag gatcgactgg cgcgaagcga atcgcgccag gatcgcgagc
     3301 ttcctcagca ggccgacgcc ggccgccgcc ggatcgagct tgcgcagcag cgaacggtcc
     3361 tcgaggacgc ggtcgtagtt gatcccgacc gggatgaaga cgaggtcgcg ctgcgccgcc
     3421 gggtcgaagc ccttcaacat gtagtcgagc aggccgagct tgggctcgcg caggcggccg
     3481 tcggtcgtca gcccgccttc cgggtacatc gcctgaggga cgccgccctc ggtcgccatc
     3541 tgcacgtagc gctgcaggac catccggtag agcgggtcgc ccgagttgcg gcggacgaaa
     3601 tacgcgccca tggcccggat caatccctgc agcggccaga ttcgcgccca ctcgccgacc
     3661 gcgtagctca gcgccacccg ttcggcggcg aggaacgaga cgagcacgta gtccatgttg
     3721 ctgcgatggt tcatgacgaa gaccaccgtc gacctcgggt cgatcgccgc cagcgccgcg
     3781 gcatcggtgt agccgaggcg gacgcgatag gtcatcttgg cgaaggtctt ggcgagccag
     3841 tagccgacgc ggaaatagac gtaggcgttg aacgccggga cgatctcgcc ggcgtaacgg
     3901 cgcacgcgct ggacgagaac gtcgcgcgga acgccgcttt ccaccacctg ctggtgcacg
     3961 gcggcgagca cgcgctgatc gctcgtcagc cggtcgagca aagcgcggcg ccgggtcagc
     4021 ttgaactccg gcagctcgat cttgaaccgc gtgctgatct cgttcatgac gcggcgcacc
     4081 ttgcggcgga agtaccagcg cacgccaggc agcaggaacc actcgagcgc cgcgaacagc
     4141 gccaggccga ccagcacgac cagcagccac agccgcacgg cgacgagctg cgtcactgcg
     4201 gcgcttcctg gcactcgaag acgacgatgc tctcgacgtg cgccgtgtgc gggaacatgt
     4261 tgacgacgcc tgccgccgcg cagcggtagc cggcgcggtg gacgaagagg ccggcgtcgc
     4321 gcgccagcgt cgccgggttg cagctgacgt agacgatccg ctcgggcgcg cgccacgacg
     4381 cgtcgtcagc tggggcttcg cagcggtcgg cgagcgcctt ggcgatcgcg aacgcgcctt
     4441 ctcgcggcgg atcgatcagc cacttcgcgg cgttgccgaa agcgaccagg tcgtcggccg
     4501 tgacctcgaa caggttacga accgcgaagc tcgccttcgc cgcga
//
LOCUS       DASVHM010000891         2673 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_644702, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000891 DASVHM010000000
VERSION     DASVHM010000891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2673
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_644702"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1723)
                     /gene="rnr"
                     /locus_tag="VF308_16425"
     CDS             complement(<1..1723)
                     /gene="rnr"
                     /locus_tag="VF308_16425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011796065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008997 - ribonuclease R activity
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HEX7438291.1"
                     /translation="MKNTSPSVGAELMSEVEGVVQGHRDGHGFVVRDDRLPDLYLSQQ
                     EMRAVLHRDRVKARVVRYDRKGRPEGRVLEILERKRAPIIGRLLHESGVWLVAPEDKR
                     YGQDILIPKNAIANAAAGQVVAIELTEPPSMYSQPVGRVTEVLGEIDDPGMEIEIAVR
                     KYEVPHLFSSETLAQAATLPDTIRPADRKNRIDLTDVVLVTIDGEDARDFDDAVYCEA
                     AKIGRTKTNNAWRLVVAIADVSHYVKPGEPLDADAYERATSVYFPRRVIPMLPEKLSN
                     GLCSLNPNVERLAMVCDMLVSATGEIHAYQFFPAVIRSHARFTYTEVAAILGNTRGPE
                     AVRREELVPDLLNLHEVYRALLKERARRGAVDFETTETQIVCDENGRIEKIVPRTRTE
                     AHKLIEEAMLAANVCAADFIVRAKHPSLYRVHEGPTPEKKTLLQNYLKALGLGITIGD
                     EPRPAEYQAVAAATKDRPDAAQIHTMLLRSMQQAIYTGINAGHFGLAYDAYAHFTSPI
                     RRYPDLLVHRVIKALLGGKRYHLLTGPSNPGPGTRKGAAAAKGAAALKGGTAEEAQWE
                     TAGIHCSA"
     gene            1764..1848
                     /locus_tag="VF308_16430"
     tRNA            1764..1848
                     /locus_tag="VF308_16430"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1798..1800,aa:Leu,seq:cag)
     gene            complement(1906..2427)
                     /locus_tag="VF308_16435"
     CDS             complement(1906..2427)
                     /locus_tag="VF308_16435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012206807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEX7438292.1"
                     /translation="MLTDDGKHLYVSWDEYHMLIERLALKVHASGWVFDQILCLARGG
                     MRPGDVLSRVFDKPLAIMSTSSYRAEAGTIQGRLDIAKYITLPKGELAGRVLLVDDLS
                     DSGVTLRAVVDRLRGMPSISELRSAVIWNKGGSTYTPDYFVELLPTSPWIHQPFEEYD
                     DLRPAGLAKKFAI"
     gene            complement(2421..>2673)
                     /locus_tag="VF308_16440"
     CDS             complement(2421..>2673)
                     /locus_tag="VF308_16440"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011804613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HEX7438293.1"
                     /translation="ADEIVACTPIYETFAGWTESTFGVTVWSGLPLNARRYLERVQLA
                     IGAPIDMVSTGPDRVHTILLRHPYLADSDAPPRKERIAC"
BASE COUNT          420 a          835 c          920 g          498 t
ORIGIN      
        1 tcgcgctgca atggatgcct gcggtttccc actgcgcctc ttccgccgtc ccgcccttga
       61 gcgctgccgc gcccttggcg gcggcagcgc ccttgcgcgt acccggcccc ggattgctcg
      121 gcccggtgag caggtgatag cgcttgccgc ccagcagcgc cttgatgacc cggtgcacga
      181 gcagatcggg atagcgccgg atggggctcg tgaagtgcgc gtaggcgtcg taggcgagcc
      241 cgaagtggcc ggcgttgatg ccggtgtaga tcgcctgctg catcgaacgc agcaacatgg
      301 tgtggatctg cgccgcgtcg ggccggtctt tcgtcgcagc ggcgacggcc tggtattcgg
      361 ccggcctcgg ctcgtcgccg atcgtgatgc cgaggccgag cgccttcagg tagttctgca
      421 gcagggtctt tttctccggc gtcggacctt cgtgaacccg atagagcgac gggtgcttgg
      481 cacggacgat gaagtcggcc gcgcacacat tggccgcgag catcgcctct tcgatcagct
      541 tgtgcgcctc ggttcgcgtg cgcggcacga tcttctcgat gcggccgttc tcgtcgcaga
      601 cgatctgggt ctcggtggtc tcgaagtcga cggcgccgcg ccgggcgcgc tccttcagca
      661 gcgcgcgata gacctcgtgc aggttgagca ggtcggggac gagttcctcc cggcgcaccg
      721 cctcgggccc gcgcgtgttg ccgaggatcg ccgcgacttc ggtgtacgtg aagcgcgcat
      781 gtgagcggat gacggcggga aagaactggt acgcatggat ctcgccggtc gcgctgacga
      841 gcatgtcgca caccatcgcg aggcgctcga cgttcgggtt cagcgagcac aggccgttcg
      901 agagcttttc cggcagcatc gggatgacgc ggcgcggaaa gtagaccgaa gtggcgcgct
      961 cgtaggcgtc ggcatcgagc ggctcgcccg gcttcacgta gtggctcacg tcggcgatcg
     1021 cgacgacgag gcgccaggcg ttgttcgtct tggtccggcc gatcttggcc gcttcgcaat
     1081 acacggcatc gtcgaaatcg cgcgcgtcct cgccgtcgat cgtgaccagc acgacgtcgg
     1141 tgaggtcgat gcggttcttg cggtcggccg ggcggatcgt gtcgggaagt gtcgcggcct
     1201 gcgccagcgt ctcggacgaa aacagatgcg gcacttcgta cttgcgcacc gcgatctcga
     1261 tttccatgcc ggggtcgtcg atctcgccga gcacctcggt gacgcgaccg accggctgcg
     1321 agtacatcga cggcggttcg gtcaattcga tcgcgacgac ctggccggcg gcggcgttcg
     1381 cgatcgcgtt cttcgggatc aggatgtcct gtccgtagcg cttgtcttcc ggcgcaacca
     1441 gccagacgcc gctttcgtgc agcaggcggc cgatgatcgg cgcgcgcttt cgctcgagga
     1501 tctcgagcac gcggccttcg ggtcggccct tgcggtcata gcggaccacg cgggccttga
     1561 cccggtcgcg atgcagcacc gcgcgcattt cctgctgcga cagatagagg tcgggcagac
     1621 ggtcgtcgcg gaccacgaag ccgtggccgt cgcgatgccc ttgcaccacg ccctccactt
     1681 cgctcatgag ttcggcgccg accgaggggg atgtgttttt caatgaattt gttttgatga
     1741 taaagtccaa ggcttcctga aaagcccagg tggcggaatt ggtagacgca ctagtttcag
     1801 gtactagcgg gtaactccgt gggggttcga gtcccttcct gggcaccaag ataataggga
     1861 cgacgaaggc cgccgcgagc ggccttcgtc acgtgagagg cgcgttcaga tcgcaaactt
     1921 cttcgcgagt ccggccggcc gcaagtcgtc gtattcctcg aacggctggt ggatccaggg
     1981 gctggtcggc agcagttcga cgaaatagtc gggcgtgtag gtcgaaccac ccttgttcca
     2041 gatcacggcc gagcgcaatt cgctgatcga cggcatgccg cgcaggcgat cgacgacggc
     2101 acgcagggtc acgcccgaat cggagaggtc gtcgacgagc aacactcgac cggcgagttc
     2161 gcctttgggc agggtgatgt atttggcgat gtcgagccgc ccctggatcg ttccggcctc
     2221 ggcgcgatac gaactcgtcg acatgatcgc gagcggcttg tcgaagacgc gcgacagcac
     2281 gtcgccgggg cgcatgccgc cgcgcgccag gcacaggatc tgatcgaaca cccatccgga
     2341 cgcgtgcacc ttgagcgcca ggcgctcgat cagcatgtgg tactcgtccc aggaaacgta
     2401 gaggtgtttg ccgtcgtcgg tcagcatgcg attctttcct ttcgaggcgg ggcgtcggaa
     2461 tcggccaggt agggatggcg caggaggatg gtgtgaaccc ggtcgggacc ggtcgacacc
     2521 atgtcgatcg gcgcgccgat ggcgagctgc acgcgctcga ggtagcgccg cgcgttcagc
     2581 ggcaggccgc tccacaccgt cacgccgaac gtgctttcgg tccagccagc aaaggtctcg
     2641 tagatcggcg tgcaggccac gatctcgtcg gca
//
LOCUS       DASVHM010000892         1707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_790229, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000892 DASVHM010000000
VERSION     DASVHM010000892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_790229"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..248
                     /locus_tag="VF308_16445"
     CDS             <1..248
                     /locus_tag="VF308_16445"
                     /inference="COORDINATES: protein motif:HMM:NF039902.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438294.1"
                     /translation="REAGVALVLLWELAPSPPEDLEQAELLFQQIKDGLYERDVKLGP
                     ALRGLRAVLTGRTEGPEMPYVLATLSRERLKHARDRA"
     gene            265..1641
                     /gene="cysS"
                     /locus_tag="VF308_16450"
     CDS             265..1641
                     /gene="cysS"
                     /locus_tag="VF308_16450"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEX7438295.1"
                     /translation="MREIRIHNTLSGVVEPLAPRDSGKVGIYVCGPTVYSRIHIGNAR
                     PYVVFMLFKRFLEHEGYAVTFASNVTDINDKIYVAARAAGVPSDRLARELTDAYLDDT
                     SRLGLGRPDAEPLATETVPEIVELIAALIERGHAYESGGDVYFSVPSYDRYGELSNRD
                     PDQMDQGEEDNSLKRDARDFALWKTQKPDEDTSWPSPWGDGRPGWHIECSAMSELILG
                     VDFDIHGGGIDLVFPHHENEGAQTFAGRGKPLARVWMHNGMVRFSGEKMSKSLGNVWQ
                     LHEALDKFEPSTLIMFFVGGHYRAPIECTEATLAQATANVERLREIAQRLAQRLAGDA
                     EQPTDPALEAALARFYDALAEDFNTPAAIGALFEWVRDANRRIDAGETLGGAAPLREA
                     LGVLGLESVFAAPATEADASALALLDQREAARAAKDFATADRLRDELLALGWEIRDTA
                     EGPRLRPV"
BASE COUNT          286 a          594 c          568 g          259 t
ORIGIN      
        1 cgcgcgaggc cggcgtcgcg ctggtgctgt tgtgggaact cgcgccttcg ccgccggagg
       61 atctggagca ggccgagttg cttttccaac agatcaaaga cggactctac gagcgcgacg
      121 tcaagctcgg cccggccctg cgcgggctgc gcgccgtgct caccggccgc accgaggggc
      181 cggaaatgcc ctacgtgctg gccacgcttt cgcgcgaacg cctgaagcac gcgcgcgatc
      241 gcgcgtagtc tttgcgccca caagatgcgc gagatcagga ttcacaacac gctcagcggg
      301 gtggtcgaac cgctcgcgcc gcgcgactca ggcaaggtcg gcatctacgt ctgcgggccg
      361 accgtctact cgcgcatcca catcggcaac gcgcgtccgt atgtggtctt catgctgttc
      421 aagcgctttc tcgagcacga gggctacgcc gtgaccttcg cgtccaacgt caccgacatc
      481 aacgacaaga tatatgtggc cgcgcgcgcg gccggcgtgc ccagcgatcg gcttgcccgc
      541 gagctgaccg acgcctacct tgacgacacg tcgcgcctcg gtctcggtcg ccccgacgcc
      601 gagccgctgg ccaccgagac ggtccccgag atcgtcgaac tgatcgcggc gctgatcgag
      661 cgcggccacg cctacgaaag cggtggcgac gtttacttca gcgtgccctc gtacgaccgc
      721 tacggcgaac tttcgaatcg cgatcccgat cagatggacc agggagaaga ggacaactcg
      781 ctgaagcgcg acgcgcgcga cttcgccctc tggaagaccc aaaagcccga tgaagacacg
      841 tcgtggccat cgccgtgggg cgacgggcgc ccgggctggc acatcgagtg cagcgcgatg
      901 agcgagttga tcctcggcgt cgacttcgac atccacggcg gcggcatcga cctcgtcttt
      961 ccgcaccacg agaacgaggg cgcgcagacc ttcgccggcc gcggcaagcc gctggcgcgc
     1021 gtctggatgc acaacggcat ggtgcgcttc agcggcgaga agatgagcaa gtcgctgggc
     1081 aacgtctggc agctgcacga ggcgctcgac aagttcgaac cctcgacctt gatcatgttc
     1141 ttcgtcggcg gccattaccg cgcgccgatc gagtgcaccg aggccacgct ggcgcaggcg
     1201 acggccaatg tcgagcggct gcgcgagatc gcccagcggc tcgcccagcg gctcgccggc
     1261 gacgctgaac agcccaccga tcccgctctg gaagcggctt tggcgcgttt ttacgatgcc
     1321 cttgccgaag acttcaacac gccggccgcg atcggggcgc tgtttgagtg ggtgcgcgac
     1381 gcaaatcgcc gcatcgacgc cggtgagacg ctcggcggcg ccgcgccgct gcgcgaggcg
     1441 ctcggcgtgc tcggcctgga aagcgtgttc gcggcgccgg cgaccgaggc cgacgcctca
     1501 gcgctcgcgc tgctcgacca gcgcgaggcc gcgcgtgccg ccaaggactt cgcgaccgcc
     1561 gaccgcctac gcgacgaact gcttgcgctc ggctgggaga ttcgcgacac cgccgaaggc
     1621 ccgcgcctgc gcccggttta gagtgcaggt ggtgcgacga cggccggttc cggccgatcc
     1681 tcgaacgcac cgcaaccgac gatgatt
//
LOCUS       DASVHM010000893         1838 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_790765, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000893 DASVHM010000000
VERSION     DASVHM010000893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_790765"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..905
                     /locus_tag="VF308_16455"
     CDS             <1..905
                     /locus_tag="VF308_16455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX7438296.1"
                     /translation="REEDMTHGRYHPVTQCKLTAGLDREGNVTGLHMRISGQSILASV
                     FPQNMQNGKDPVVFQGLNPGGPEGAFGYAVPNLLIDHAMRNPHVPPGFWRGVNLNHNA
                     IYLECFIDEIAHASGQDPLALRRKLLAKAPKNLAVLNAVAERAGWDKPAPKGVHRGLA
                     QIMGFGSYVAACAEVSVADDGTLKIHRIVAATDPGHAVNPQQIEAQVEGSFVYGLSAA
                     LYGGCTVKDGRIEQDNFSTYPVMQMQQMPAVEAIVMPSGGFWGGVGEPTIAVAAPAVL
                     NAIFAATGKRIRDLPLKNHSLKKA"
     gene            924..1400
                     /gene="soxX"
                     /locus_tag="VF308_16460"
     CDS             924..1400
                     /gene="soxX"
                     /locus_tag="VF308_16460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011902998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur oxidation c-type cytochrome SoxX"
                     /protein_id="HEX7438297.1"
                     /translation="MRGRCKGSGRAAAGVALGALALSLEPACAEPGAVVPFSVVGDAI
                     PQPLTAMPGDAARGRAIVANRQVGLCLLCHTGPFPEERFQGNLAPDLAGAGARWSEGQ
                     LRLRLVDGRRLSPQTIMPSYHRTEGLERVGSAWKDRPVLAAQQIEDVVAFLATLRN"
     gene            1412..>1838
                     /locus_tag="VF308_16465"
     CDS             1412..>1838
                     /locus_tag="VF308_16465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxY-related AACIE arm protein"
                     /protein_id="HEX7438298.1"
                     /translation="MSMVRLPHAAPATRRGLLRRGLGLGALLVLRPASGATPVDLDAA
                     IRAFAGGAPVATGKVQLDIAPLVENGNAVPITVTVESPMTPADHVRSIAVFNERNPQR
                     DVVVFTLGPRSGRARVATRIRLATSQRLVAVAQLSDGTFW"
BASE COUNT          282 a          647 c          635 g          274 t
ORIGIN      
        1 cgcgcgagga ggacatgacg cacggccgct accacccggt cacgcagtgc aagctgacgg
       61 ccgggctcga ccgcgaaggc aatgtcaccg gcctgcacat gcgcatctcg gggcagtcga
      121 tcctggccag cgtgtttccg cagaacatgc agaacggcaa ggacccggtc gtgttccagg
      181 gcctcaaccc cggtggcccc gaaggtgcgt tcggctatgc ggtgccgaac ctcctgatcg
      241 accacgcgat gcgcaacccg cacgtcccgc ccggtttctg gcgcggcgtg aacctgaacc
      301 acaacgcgat ctacctcgaa tgcttcatcg acgagatcgc ccacgcgagc gggcaggatc
      361 cgctcgcgtt gcgcaggaag cttctcgcga aagcgccgaa gaatctggca gtgctcaacg
      421 ccgtggccga acgcgccggc tgggacaagc ccgcgccgaa aggcgtgcat cgcgggctcg
      481 cgcagatcat gggcttcggc agctatgtcg cggcctgcgc cgaagtctcg gtcgccgacg
      541 acggcacctt gaagattcac cgcatcgtcg ccgccaccga ccccggccat gcggtcaacc
      601 cgcagcagat cgaggcccag gtcgaaggct cgttcgttta cggactttcg gcggcgctct
      661 acggcggctg caccgtgaag gacggccgca tcgagcagga caacttcagc acctacccgg
      721 tgatgcagat gcagcagatg cccgcggtcg aggctatcgt gatgccctcg gggggctttt
      781 ggggcggagt cggcgagccg accatcgcgg tcgcagcgcc ggcggtgctg aacgcgatct
      841 tcgcggccac cggcaagcgc attcgcgacc tgccgctgaa gaatcacagc ctgaagaagg
      901 cctgaggtcg gcgggagctc accatgcggg gcaggtgcaa gggttcgggt cgggctgcag
      961 cgggtgtcgc gctgggcgcg ctcgcgctgt cgctcgagcc ggcatgcgcc gagcccggag
     1021 cggtcgtgcc cttcagcgtg gtcggcgatg cgatcccgca gccattgacg gcgatgcccg
     1081 gggatgcggc gcgcggccgc gcgatcgtcg ccaatcgcca ggtcgggctc tgcctgctgt
     1141 gccacacggg gccctttccc gaagaacgct ttcagggcaa cctcgcgccc gatctcgccg
     1201 gtgccggtgc ccgttggagc gaggggcagt tgcgcctgcg gctcgtcgac gggcggcgcc
     1261 tgagtccgca gacaatcatg ccgtcgtacc accgcaccga agggctcgag cgcgtcggct
     1321 cggcctggaa ggacaggccg gtgctggccg cgcagcagat cgaagacgtg gtcgcgttcc
     1381 tcgccacctt gcgaaactga ggcggcccct gatgtcgatg gtgcgactcc cccatgcggc
     1441 gcctgcgacg cggcgcggtc tcctgcgacg cggcctcggc ctcggcgcgc tgctcgtgct
     1501 gcgtcccgcg agcggcgcca cgccggtcga tctcgatgcg gccatccgcg ccttcgcggg
     1561 cggtgccccg gtagccaccg gcaaggtgca gctcgacatc gcgccgctgg tcgagaacgg
     1621 caatgccgtg ccgatcacgg tcacggtcga aagcccgatg acgccggccg accacgtccg
     1681 ctcgatcgcc gtcttcaacg agcgcaaccc gcagcgcgat gtcgtcgtgt tcacgctcgg
     1741 cccccgctcg gggcgggcgc gcgtcgcgac ccgcatccgc ctcgcgacgt cgcagcgcct
     1801 ggtcgccgtc gcgcaattga gcgacggcac gttctggc
//
LOCUS       DASVHM010000894         9376 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_717846, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000894 DASVHM010000000
VERSION     DASVHM010000894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 9376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9376
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_717846"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..279
                     /locus_tag="VF308_16470"
     CDS             <1..279
                     /locus_tag="VF308_16470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427804.1"
                     /note="part of multienzyme complex composed of H, L, P,
                     and T proteins which catalyzes oxidation of glycine to
                     yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a
                     reduced pyridine nucleotide; protein H is involved in
                     transfer of methylamine group from the P to T protein;
                     covalently bound to a lipoyl cofactor; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein H"
                     /protein_id="HEX7438299.1"
                     /translation="GDVVFVDLPVIGARFKRGEVAGVVESVKAAADLFMPVGGEVIEV
                     NEALRADPSLANTDPQAAGWFFKVRIADAGELAELMDGTAYETLLKSA"
     gene            314..3256
                     /gene="gcvP"
                     /locus_tag="VF308_16475"
     CDS             314..3256
                     /gene="gcvP"
                     /locus_tag="VF308_16475"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016451506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HEX7438300.1"
                     /translation="MLMSAQKPLADLEDPSEFVARHIGIGPDDERRMLSVIGAASRQA
                     LIDAVVPRAIARAAPMALPPAIGEAEALAELKRIAAQNRVLKSFIGQGYHGTHTPAVI
                     LRNVLENPAWYTAYTPYQAEISQGRLEALVNFQTMVCDLTGMAIAGASMLDEATAAAE
                     AMTLALRTFSGARAAKLGTFFVADDVLPQTLDVVRTRARPLGIEVECGRAEDAAAADA
                     FAVLLQYPGVSGAVRDLKPIIAVVHARGGVAIVSADLLALTLLTSPGEMGADICVGTT
                     QRFGMPMGNGGPHAAYLATKDEFKRSMPGRLVGVSVDAHGAPAYRLALQTREQHIRRE
                     KATSNICTAQVLPAVVASMYAVYHGPDGLRRIARRVASYTAVLAAVLRSHEFALAHTS
                     SFDTIEVETGARTDEIMGAALAANCNLRRASPRSIGITLDETTTRADIDFLCKAFAGR
                     SGGAAASPVVDWARFEKGVAPLLPPALLRTTPFLTHPVFNRHHSETRMLRYLRSLADK
                     DLALDRTMIPLGSCTMKLNASSEMIPITWPEFAQVHPFAPRDQRAGYDALRKQLEAWL
                     CEATGYAGVSLQPNAGAQGEYAGLLVIKAWHEARGEGRRNVCLIPESAHGTNPASAQM
                     AGMQVVVTRCDADGNVDLDDLRDKCAQHADRLAAVMITYPSTYGVFEARVKELCEVVH
                     AHGGRVYVDGANLNALVGVAAPGEFGGDVSHLNLHKTFCIPHGGGGPGVGPVCVVADL
                     VPYLPGHPSGGVGSATSVGAISAAPLGNAAVLPISWMYMRMMGAAGLKAATETAILSA
                     NYIAARLAGHYEVHYSGNIAGIRGGGVAHECILDLRPLKEATGGARGVSAEDVAKRLI
                     DYGFHAPTLSFPVAGTLMVEPTESESLEELDRFCEAMIAIRAEVALVESGQWPQDDNP
                     LKAAPHTAEALLKADWPHAYTRDVAAYPVASLRRSKYWSPVGRVDNVWGDRNLFCSCP
                     PVSATESA"
     gene            3335..3754
                     /locus_tag="VF308_16480"
     CDS             3335..3754
                     /locus_tag="VF308_16480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX7438301.1"
                     /translation="MLDTTTTKFSHVKEGETPWRSDGLRDFFLYRDLGIEQATAGRVI
                     AQLVKANMAPEKGTGWHRHEADFHIVFMTKGWARFMYGDEETLVEAGDCVHQRPGIVH
                     YLFDYSPDMEYLEIVGPADFKSIDMPAPCAVPSPKTW"
     gene            complement(3773..4519)
                     /locus_tag="VF308_16485"
     CDS             complement(3773..4519)
                     /locus_tag="VF308_16485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX7438302.1"
                     /translation="MPPVATLSKPKARATRSAAAPERSGRAAAATRTAALTLSSKNYS
                     SWSLRGWLMARFAGLAFKEVMVGPDDADARQEILLLSPSIRVPCLTHDGIKVWDTLAI
                     GEYLAEVVPGSGLLPAALAARAHCRAICGEMHSGFSSLRSALPMNLKGDFPGYKVWTR
                     AIGDIERITAIWGECIEKYGGPFLFGAQRCIADAMYAPVVTRFRTYHVKLDRTSLVYC
                     DRIMQMPEMQEWAAAARLEIDEIDELDMDF"
     gene            4690..5907
                     /gene="phaZ"
                     /locus_tag="VF308_16490"
     CDS             4690..5907
                     /gene="phaZ"
                     /locus_tag="VF308_16490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate depolymerase"
                     /protein_id="HEX7438303.1"
                     /translation="MMYQAYQAHADLMWPLRAFAKLSVPLLMDPAYGDAAGATRRQMA
                     AACRVLELAEVTHKRPPWNIASVVDGGREVRVTEEATLVTPFATLRRFRKDVSVAQPR
                     VLIIAPMSGHFATLLRDTVRTMLGDHDVYVTDWHNVRDVPLSAGRFGLDEYTGHLVDF
                     LAAMGPGAHVMAICQPSVSALAAVALMSEDHHPATPLSLTLMAGPIDCRINPTEVNRL
                     AVAKPIEWFEKNLISHVPLRHPGAGRRVYPGFVQLSAFMSMNRERHVNAFNDYYAHLV
                     ADEFDKAEVTRTFYEEYMAVADLSADFYLETVRLVFQEYALPRGELRVRGRTVDPALI
                     RRTALLTIEGERDDICSVGQTLAAQDLCTGLRPYLRTHYVQPGVGHYGVFSGKRWQNH
                     IYPVVRDVIHVSQ"
     gene            complement(5915..9136)
                     /locus_tag="VF308_16495"
     CDS             complement(5915..9136)
                     /locus_tag="VF308_16495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX7438304.1"
                     /translation="MWFTRVSINNPVFATMAMAALCVLGLFSYSQLRVERLPDIAPPI
                     VFVSVAYPGASPDATETELTRPIELALNGIAGVKMIRSNSLEGRSETVVEFLLSADMA
                     RAVQDVRDKVAAVQPNFPRDAKTPYVSRFDGDNAQPTVYLSLLGADRSARELSLLADK
                     IVRRRLERVAGVARVDVGGLTVRQVRIDLNPQRLRAYQLAPADVSAALQRANADMPVG
                     LLSSSKEDAIVRVEGKVRDAKAFGDLVVASRNGMVVRLADLGTLVEREREPDSISRVD
                     GVPAISFQVFKQQDANIVDTGEGVKEAAEELRKGLPPGVELRLVYADSDWVKRSLDGV
                     KTTLIEGALLTVAIVFLFLHSWRSTVITGLTLPIAVISSFIAVYCFGFTLNFMTMMAL
                     SLCIGLLIDDAIVVRENIVRHVRMGKDHRTAASEGTEEIGLAVMATTFAICAVFVPVA
                     FMKGIVGKFFFPFGVTVAVAVLVSLFVSFTLDPMLSSVWRDPPANRLLKVPVLGGLMR
                     ASDRFLDVLHGVYERLIRWIFSGRRYRVLVPPVPAYGRGFDAEGRRDPDSPRRWRFAT
                     LTPRAVVMLVGIGSFVGAIGLTPLVGSEFIPDADNSYIQLNVTLPVGTSLQRGSDKLL
                     QVEELVRRMPEVRMASTTVGDTGNGSRNSATLSIQLVKPHERRKKQREIEEALRAALK
                     PIPGIEVTLGNQPIYVALLGPEPQVLETEVLRLADKVAKVKGIADLTTSVKPGLPAYA
                     VRLKPDAVRELGLTPTQLATSLRAFINGDVATYWTSPDGEQVDVELRLPQNARENIAQ
                     LDALPVAYTKDGTPIALARVAEIVPVVNPLVIKRQDLQRRQAIYAGTQGRPSGDVGAD
                     VQKIVKETQLPPGYRFDVGGQTKDQQEAFSGVLMALVAAVIFIYIVLASQFGSFAQPL
                     AIMVSLPLALIGVMLALLVTRSTLNLFSMIGLVMLMGLVTKNAILLVDFANHGHKAGL
                     SIPEALLQAGLVRMRPIIMTTAAMVFGMLPLALALNEGGEIQAPMGRAIIGGVITSTL
                     LTLVVVPVLYSYLVRERKAGVATAPALAFPGGSMAAHMPAAKE"
     gene            complement(9165..>9376)
                     /locus_tag="VF308_16500"
     CDS             complement(9165..>9376)
                     /locus_tag="VF308_16500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX7438305.1"
                     /translation="EKDALVRRIVVTGRTDPASGRIEVTQGLVPDAQVLAARFDNLKE
                     GAAAQIVAQRAAPTASTPASAAPKS"
BASE COUNT         1517 a         3286 c         3155 g         1418 t
ORIGIN      
        1 ggcgacgtcg tgttcgtcga cctgccggtc atcggcgcac gcttcaagcg cggcgaggtc
       61 gcgggcgtcg tcgaatcggt gaaggcggcg gccgatctgt tcatgccggt cggcggcgag
      121 gtgatcgagg tcaacgaggc cttgcgtgcc gatccgtccc tcgccaacac cgacccgcag
      181 gccgcgggct ggttcttcaa ggttcgcatc gccgacgccg gcgaactcgc ggaattgatg
      241 gacggcaccg cgtacgagac gctgctcaag agcgcctgac gctgcgccga acccctcccc
      301 aaaggccagc tccatgctca tgtccgccca gaagccgctc gccgatctcg aggatccgtc
      361 cgagttcgtc gcccgccaca tcggcatcgg ccccgacgac gagcgccgca tgctctcggt
      421 catcggcgcc gcctcgcgcc aggcgctgat cgatgcggtg gtgccgcgcg ccatcgcgcg
      481 cgctgcgccg atggcgctgc cgccggccat cggcgaggcc gaagcgttgg ccgagctgaa
      541 acgcattgcc gcgcagaacc gggtgctgaa gagcttcatc ggccagggct atcacggcac
      601 ccacacgccg gcggtgatcc ttcgcaacgt gctcgagaac ccggcctggt acacggccta
      661 tacgccctat caggccgaga tttcgcaggg tcggctcgaa gcgctggtga acttccagac
      721 gatggtctgc gacctcaccg gaatggcgat cgccggggcg tcgatgctcg acgaagcgac
      781 ggccgctgcc gaggcgatga cgctggcgct gcgcacgttt tccggcgcga gagccgccaa
      841 gttgggcacg ttcttcgtcg ccgacgacgt gctgccgcag acgctcgacg tcgtgcgcac
      901 gcgcgcgcgc ccgctcggca tcgaggtcga gtgcggccgc gccgaggacg cggccgcggc
      961 cgatgcgttc gcggtgctgc tgcagtatcc cggcgtcagc ggcgccgtgc gcgacctcaa
     1021 gcccatcatc gctgtcgtgc acgcgcgcgg cggcgtggcg atcgtcagcg ccgacctgct
     1081 ggcactgacc ctgctcacct cgcccggcga gatgggcgcc gacatctgcg tcggcacgac
     1141 gcagcgcttc ggcatgccga tgggcaacgg cggcccgcat gccgcctatc tcgccaccaa
     1201 ggacgagttc aagcgctcga tgcccggcag gctggtgggc gtcagcgtcg acgcgcacgg
     1261 cgcgccggcc tatcgcctcg cgctgcagac gcgcgagcag cacattcggc gcgagaaggc
     1321 gaccagcaac atctgcaccg cgcaggtcct gccggccgtc gtcgcgagca tgtacgcggt
     1381 ctatcacggc cccgacgggc tgcgccggat cgcgcgccga gtcgcgagct acaccgcggt
     1441 gctcgcggcg gtgctgcgtt cgcacgaatt tgccctggcc cacacgagct ccttcgacac
     1501 gatcgaagtc gagaccggcg cgcgcaccga cgaaatcatg ggcgccgcac tcgccgcgaa
     1561 ttgcaacctg cgccgagcga gcccgaggag catcggcatc accctcgacg aaacgacgac
     1621 gcgtgccgac atcgacttct tgtgcaaggc cttcgcgggc cgcagcggcg gtgccgccgc
     1681 aagcccggtc gtcgactggg ctcgcttcga gaagggcgtc gcgcccttgc tgccgccggc
     1741 attgctgcgc accaccccgt tcctgaccca tccggtcttc aaccgccacc attccgagac
     1801 ccggatgctg cgctacctgc gcagccttgc cgacaaggac ctggcgctcg atcgcacgat
     1861 gattccgctc ggctcgtgca cgatgaagct gaacgcgagc agcgagatga tcccgatcac
     1921 ctggccggaa ttcgcgcagg tgcatccgtt cgcgccgcgc gaccagcgcg ccggctacga
     1981 cgccttgcgc aagcagctgg aggcctggct ttgcgaggcg accggctacg ccggcgtgag
     2041 cctgcagccc aacgccggtg cgcaaggtga atacgccggc ctcctcgtga tcaaggcctg
     2101 gcacgaggcg cgcggcgaag gccggcgcaa cgtttgcctg attcccgaat cggcgcacgg
     2161 cacgaacccg gcgagcgcgc agatggccgg catgcaggtg gtggtgacgc gctgcgatgc
     2221 cgacggcaac gtcgatctcg acgacctgcg cgacaagtgc gcgcagcacg ccgaccggct
     2281 cgcggcggtg atgatcacct acccctcgac ctacggcgtc ttcgaggcac gcgtgaagga
     2341 actttgcgaa gtcgtccatg cccacggcgg ccgcgtgtac gtcgatggcg cgaacctcaa
     2401 tgcgctcgtc ggcgtggccg cgccgggcga gttcggcggc gacgtgagcc acctcaacct
     2461 gcacaagacc ttctgcatcc cgcacggcgg cggagggccg ggtgtgggcc cggtctgcgt
     2521 ggtcgccgac ctcgtgccct atctgcccgg ccacccgagc ggcggcgtcg gctcggcgac
     2581 ctcggtcggt gcaatcagcg ccgcgccgct cggcaatgcc gcggtgctgc cgatcagctg
     2641 gatgtacatg cggatgatgg gcgccgcggg gctcaaggcc gccacggaaa ccgcgatcct
     2701 ctcggccaac tacatcgccg cgcgcctcgc cggccactac gaggtgcact acagcggcaa
     2761 catcgcgggc atccgcggcg ggggcgtcgc ccacgagtgc atcctcgacc tgcggccgct
     2821 caaggaagcg accggcgggg cccgcggcgt cagcgccgag gacgtcgcga aacgcctgat
     2881 cgactacggc ttccatgcac cgaccttgag ctttccggtc gcgggcacgt tgatggtcga
     2941 gccgaccgaa agcgaatcgc tcgaggaact cgaccgcttc tgcgaggcga tgatcgcgat
     3001 ccgcgcggaa gtggccttgg tggaatcggg gcagtggcca caggacgaca acccgctgaa
     3061 ggcggccccg cacactgccg aggcgctgct caaggccgac tggccgcacg cctacacgcg
     3121 cgacgttgcg gcctatccgg tcgcgtcgct gcgtcgatcc aagtactggt cgccggtcgg
     3181 tcgcgtcgac aacgtctggg gtgatcgcaa tctcttctgt tcctgcccgc cggtcagcgc
     3241 caccgaaagc gcctgaagaa cgccggcgct cgattcccgt ggaacgggtt atgcatgccc
     3301 cgcgagtacc tttgtgctcc gcggagaccg ccccatgctg gacaccacca ccacgaagtt
     3361 ctcgcacgtg aaggagggcg aaacgccctg gcgcagcgac ggcctgcgcg atttctttct
     3421 ctaccgtgac ctcggcatcg aacaggcgac ggcgggccgg gtgatcgccc agctcgtcaa
     3481 ggccaacatg gcaccagaga agggcaccgg ctggcaccgc catgaggcgg acttccacat
     3541 cgtcttcatg acgaagggct gggcgcgctt catgtacggc gacgaagaaa cgctcgtcga
     3601 agccggcgat tgcgtgcatc agcggcccgg catcgtccac tacctgttcg actattcgcc
     3661 ggacatggag tacctcgaga tcgtcggccc cgccgacttc aagtcgatcg acatgccggc
     3721 gccgtgcgcg gtgccgagcc cgaagacctg gtagcttgcg cgcggcgggc gcctagaagt
     3781 ccatgtcgag ttcgtcgatc tcgtcgatct cgagccgcgc cgccgcggcc cattcctgca
     3841 tctcaggcat ttgcatgatc cggtcgcagt agacgaggct ggtgcgatcg agcttgacgt
     3901 ggtaggtccg aaaccgcgtc accaccggcg cgtacatcgc gtcggcgatg cagcgctgcg
     3961 cgccgaacag gaacggaccg ccgtatttct cgatgcactc gccccagatc gcggtgatgc
     4021 gctcgatgtc gccgatcgcc cgggtccaga ccttgtagcc ggggaagtcg cctttcaggt
     4081 tcatcggcag ggccgagcgc aggctgctga agccggaatg catctcgccg cagatcgcgc
     4141 ggcaatgggc gcgcgccgcg agggcggccg gcaacaggcc gctgcccggc acgacctcgg
     4201 cgaggtactc gccgatcgcc agcgtgtccc agaccttaat gccgtcgtgc gtcaggcacg
     4261 gcacgcggat gctcggcgac agcaacagga tctcctgccg ggcgtcagca tcgtcgggcc
     4321 cgaccatgac ttccttgaag gcgaggccgg cgaagcgggc catcagccag ccgcgcagcg
     4381 accacgacga atagttcttg ctgctcaggg tcagcgccgc ggtccgcgtc gcggcggcgg
     4441 cgcgtccgga gcgctccggg gcggcggccg accgggtggc gcgggccttt ggcttggaca
     4501 gggtggcgac gggcggcatg gcgtggatct ccggctcgac gttggaatgg cggccagccg
     4561 ttgacgaccc gccgcgccgc gccttctgcg caggcgccgg aggtcttgtg caagggatgt
     4621 gccaatgcct cgcgcccgcc ccggctggcc cgcaagttgc agcagcaggc gaacaacgcc
     4681 ggagaccgca tgatgtacca ggcctaccag gcgcatgccg atctgatgtg gccgctgcgc
     4741 gcattcgcca agctgtccgt gccgctgctg atggaccccg cctacggcga cgcggcaggc
     4801 gcgacgcggc gccagatggc cgccgcctgc cgggtgctcg agctcgccga agtcacgcac
     4861 aagcgcccgc cctggaacat cgccagcgtc gtcgacggcg gccgcgaggt gcgggtcacc
     4921 gaagaagcca cgctggtgac gccgttcgcc acgctgcggc gctttcgcaa ggacgtgtcc
     4981 gtggcccagc cgcgcgtgct gatcatcgcg ccgatgtcgg ggcatttcgc gacgctgctg
     5041 cgcgacaccg tgcgcaccat gctcggggac cacgacgtct acgtcaccga ctggcacaac
     5101 gtgcgcgacg tgccgctctc ggccggccgc ttcggcctcg acgaatacac cggccacctc
     5161 gtcgacttcc tcgcggccat ggggccgggc gcgcacgtga tggcaatctg ccagccgagc
     5221 gtctcggcgc tcgccgccgt cgccctgatg tcggaggacc accatccggc gacgccgctc
     5281 agcctgacgc tgatggccgg accgatcgat tgccgcatca acccgaccga ggtcaaccgg
     5341 cttgccgtgg ccaagccgat cgagtggttc gagaagaacc tgatcagcca tgtgccgctg
     5401 cgccatcccg gcgcgggccg gcgcgtctac cccggcttcg tgcagctttc ggcgttcatg
     5461 agcatgaacc gcgagcgcca tgtcaacgcg ttcaacgact actacgccca cctcgtcgcc
     5521 gacgagttcg acaaggccga ggtgacacgc acgttctacg aggagtacat ggcggtcgcc
     5581 gacctgtcgg ccgatttcta cctcgagacc gtgcgcctcg tgttccagga atacgcgctg
     5641 ccgcgcggcg aactccgggt gcgcggacgg acggtcgatc cggccttgat tcgccgcacc
     5701 gccctgctca cgatcgaagg cgagcgcgac gacatctgct cggtgggcca gacgctcgcg
     5761 gcccaggacc tgtgcacggg cctcagaccc tacctgcgca cgcactacgt gcaacccggc
     5821 gtcggacact acggcgtctt cagcggcaag cgctggcaga accacatcta cccggtcgtg
     5881 cgcgatgtga tccacgtctc gcaatgacgc gccgctattc cttcgcggcc ggcatgtgcg
     5941 cggccatcga tccgcccggg aaggcgagtg cgggagccgt tgcgacgccg gccttgcgct
     6001 cgcgcacgag gtaggaatag aggaccggca cgaccaccag ggtcagcagc gtcgaggtga
     6061 tcaccccgcc gatgatcgcg cggcccatcg gcgcctggat ctcgccgccc tcgttgagcg
     6121 cgagcgcgag cggcagcatg ccgaagacca tcgccgcggt cgtcatgatg atgggccgca
     6181 tgcgcaccag tccggcctgc agcaacgcct cggggatcga caggcccgcc ttgtggccgt
     6241 ggttcgcgaa gtcgacgagc aggatcgcgt tcttcgtcac cagccccatc agcatgacga
     6301 ggccgatcat cgaaaagaga ttcagcgtcg agcgcgtcac cagcagcgcg agcatcacgc
     6361 cgatcagcgc gagcggcagc gacaccatga tggcgagcgg ctgcgcgaag ctgccgaact
     6421 gcgaggcgag cacgatgtag atgaagatca ccgcggcgac gagcgccatc agcacgcccg
     6481 agaaggcctc ctgctgatcc ttggtctggc cgccgacgtc gaagcgatag cccggcggca
     6541 gctgcgtctc cttgacgatc ttctgcacgt cggcaccgac atcgccgctc ggccggccct
     6601 gcgtgccggc gtagatcgcc tggcggcgct gcaggtcctg gcgtttgatc acgagcggat
     6661 tgacgaccgg cacgatctcg gcgacccgcg cgagcgcgat cggcgtgccg tccttcgtgt
     6721 acgcgaccgg cagcgcgtcg agctgcgcga tgttctcgcg cgcgttttgc ggcaggcgca
     6781 gctcgacgtc gacctgttcg ccgtcgggcg aggtccagta ggtcgcgacg tcgccgttga
     6841 tgaaggcacg caggctcgtc gcgagctggg tcggcgtcag gccgagctcg cgcaccgcat
     6901 cgggcttcag gcgcaccgcg taggccggca ggcccggttt caccgaggtc gtgaggtcgg
     6961 cgataccctt caccttggcg accttgtcgg cgaggcgcag cacttccgtc tcgagcacct
     7021 gcggctcggg cccgagcagc gcgacgtaga tcggctggtt gccgagcgtg acctcgatgc
     7081 cgggaatggg ctttagcgcg gcgcgcaacg cctcctcgat ctcgcgctgc ttcttcctgc
     7141 gctcatgcgg cttgacgagc tggatgctca gcgtggccga attgcggctg ccgttgccgg
     7201 tatcgccgac ggtggtcgag gccatgcgca cctccggcat gcgccgcacc agttcctcga
     7261 cctgcagcag cttatcgctg ccgcgctgca ggctggtgcc caccggcaag gtcacgttga
     7321 gctggatata gctgttgtcc gcgtccggaa tgaactcgct gccgaccagc ggcgtgagcc
     7381 cgattgcccc gacgaagctg ccgattccga ccagcatcac cacggcgcgc ggcgtcagcg
     7441 tcgcgaagcg ccagcgccgc ggggaatccg ggtcgcgccg gccctcggcg tcgaaacccc
     7501 ggccgtacgc tgggaccggc ggaacaagaa ctcggtaacg ccgtcccgag aagatccagc
     7561 ggatcaggcg ctcgtagacg ccgtgcagaa cgtccaggaa ccggtcgctg gcgcgcatca
     7621 acccacccag caccggcacc ttcagcagcc gattggccgg cggatcgcgc cacacgctcg
     7681 agagcatcgg gtcaagcgtg aagctgacga agagcgacac cagcaccgcc accgcgacgg
     7741 tcacgccgaa cgggaagaag aacttgccga cgatgccttt catgaacgcg accgggacga
     7801 acacggcgca gatcgcgaac gtcgtcgcca tcaccgcgag gccgatctcc tcggtgccct
     7861 cgctggcagc ggtccgatgg tccttgccca tgcgcacatg gcgcacgatg ttctcgcgca
     7921 ccacgatcgc gtcgtcgatc agcaggccga tgcacagcga cagcgccatc atcgtcatga
     7981 agttgagcgt gaagccgaag cagtagaccg cgatgaacga cgagatcacc gcgatcggca
     8041 gcgtcagccc ggtgatcacc gtgctgcgcc agctgtgcag gaacaagaac acgatcgcga
     8101 ccgtcaacag cgcaccctcg atcagcgtgg tcttgacgcc gtcgagcgaa cgcttgaccc
     8161 agtcgctgtc ggcgtagacg aggcgcaatt ccacgcccgg cggcagaccc ttgcgcagct
     8221 cctcggccgc ctccttgacg ccttcgccgg tgtcgacgat gttcgcatcc tgctgcttga
     8281 aaacctgaaa cgagatcgcc gggacgccat cgacccgcga aatcgaatcg ggctcgcgct
     8341 cgcgctcgac cagcgtgccg agatcggcga gtcgaaccac catgccgttg cggctggcga
     8401 cgacaaggtc gccgaacgcc ttggcatcgc gcaccttgcc ttcgacgcgg acgatcgcgt
     8461 cctctttcga gctgctcagc aggccgaccg gcatgtcggc attggcgcgc tgcagggccg
     8521 ccgacacgtc ggccggcgcg agctggtagg cgcgcaggcg ctgcgggttg agatcgatgc
     8581 ggacctgacg caccgtgagg ccgccaacgt cgacgcgggc cacgccggcg acccgctcga
     8641 ggcgcctcct gacgatcttg tcggcgagca gcgagagctc gcgtgcgctg cggtcggcgc
     8701 cgagcagcga gaggtacacc gtcggctggg cgttgtcgcc gtcgaagcgc gacacgtaag
     8761 gcgtcttggc gtcgcgcggg aagttcggct gcaccgcggc gaccttgtcg cgcacgtcct
     8821 gcaccgcacg cgccatgtcg gcgctgagca ggaactcaac gaccgtctcg ctgcgcccct
     8881 cgaggctgtt cgagcggatc atcttgaccc cggcgatgcc gttcagcgcg agctcgatcg
     8941 gccgcgtcaa ctcggtttcg gtcgcatcgg gcgaagcccc ggggtaggcg acgctgacga
     9001 agacgatcgg tggggcgatg tccggcaggc gttcgacgcg cagctggctg taggagaaca
     9061 ggccgagcac gcacagcgcc gccatcgcca tcgtcgcgaa gaccgggttg ttgatcgaga
     9121 cgcgggtgaa ccacatgaga cgcctccgca ggtcgccgcc cggctcagga cttcggcgcg
     9181 gccgaggccg gagtggacgc ggtcggcgcc gcgcgctggg cgacgatctg cgccgccgcg
     9241 ccctccttca ggttgtcgaa gcgcgccgca agcacctgcg catccggcac cagaccctgg
     9301 gtcacttcga tccggccgct ggccggatcg gtccggccgg tgacgacgat gcggcgcacc
     9361 agggcgtcct tttcga
//
LOCUS       DASVHM010000895         1889 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_211481, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000895 DASVHM010000000
VERSION     DASVHM010000895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1889
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211481"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1325
                     /locus_tag="VF308_16505"
     CDS             <1..1325
                     /locus_tag="VF308_16505"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018904203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEX7438306.1"
                     /translation="DVIVYRRTGSGVSWQTGRDSWLHEVTYDRAETCEPEWVGAEHPL
                     FLLYTSGSTGKPKGVQHSTGGYLLHAALTTAWTFDLKDDDVFWCTADIGWVTGHSYIT
                     YGPLALGGTEIVFEGIPTYPDAGRFWKMIQDHKVTIFYTAPTAIRSLIKAAEGTATAH
                     PRNYDLTSLRILGTVGEPINPAAWEWYHKHIGGGRCPIVDTFWQTETGGHVITPLPGA
                     TPLVPGSCTLPFPGIMAEVVDETGHDMPWGQGGILVIKRPWPSMIRTIYGDPERFRKS
                     YYPEEFKGRYYLAGDGAIRDEKTGYFTITGRIDDVLNVSGHRMGTMEIESALVSHTAL
                     VAEAAVVGRPDDTTGEAICAFVVLKRSRPTGDEAKAIAKELRDWVGKQIGPIAKPKDI
                     RFGDNLPKTRSGKIMRRLLRSVANDQPITQDTSTLENPAILAQLAEKN"
     gene            complement(1261..>1889)
                     /locus_tag="VF308_16510"
     CDS             complement(1261..>1889)
                     /locus_tag="VF308_16510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008444445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX7438307.1"
                     /translation="PALSLQPLVENAIVHGLEPLISGGTIRIAARLERGALVLTVEDD
                     GAGIQAENQATEAQLRLLQAQIEPHFLFNTLANVVGLIEADPPRAKLMLESFIDYLRS
                     SLGGLRGERHTLGEEIDLIDAYLRVIAIRMAHRLHYEIDVPDALRALPLPALSLQPLV
                     ENAVVHGLEPKIEGGRVRVDAREANGLISSSPPTAPRSPDSRASTCPG"
BASE COUNT          330 a          664 c          619 g          276 t
ORIGIN      
        1 gcgacgtgat cgtgtaccgg cgcaccggct ccggcgtcag ctggcagacc gggcgcgaca
       61 gctggctcca tgaggtcacg tacgaccggg ccgaaacctg cgagccggaa tgggtcgggg
      121 ccgagcatcc gctcttcctg ctctacacct cgggctcgac cggcaagccc aagggcgtgc
      181 agcacagcac cggcggctac ttgctgcacg cggcattgac gactgcctgg accttcgacc
      241 tcaaagacga cgacgtcttc tggtgcacgg ccgatatcgg ctgggtcacc ggccacagct
      301 acatcaccta cggtccgctc gccctcggcg gcaccgagat cgtcttcgaa ggcattccca
      361 cctatcccga cgccggccgg ttctggaaaa tgatccagga tcacaaggtc acgatcttct
      421 acaccgcgcc gaccgcgatc cgctcgctca tcaaggccgc cgaaggcacc gcgacggcgc
      481 acccgcgcaa ctacgacctg accagcctgc gcatcctcgg cacggtcggc gagccgatca
      541 accccgccgc ctgggagtgg taccacaagc acatcggcgg cgggcgctgc ccgatcgtcg
      601 acacgttctg gcagaccgag accggcggcc acgtgatcac gccgctgccc ggcgcgacgc
      661 cactcgtgcc gggctcgtgc acgctgccct tcccgggcat catggccgag gtggtcgacg
      721 aaaccggtca cgacatgccg tggggccagg gcggcatcct cgtgatcaag aggccgtggc
      781 cgagcatgat ccgcacgatc tacggcgacc cggagcgctt caggaaaagc tactaccccg
      841 aggagttcaa gggccgctac taccttgccg gcgacggcgc gatccgcgac gagaagaccg
      901 gctacttcac gatcaccggc cgcatcgacg acgtgctcaa cgtcagcgga caccgcatgg
      961 gcacgatgga gatcgagtcg gcgctggtgt cgcacaccgc gctcgtggcc gaggcggcgg
     1021 tcgtcggccg gcccgacgac acgaccggcg aggcgatctg cgccttcgtg gtcctgaaac
     1081 gctcgcgccc caccggcgac gaagccaagg cgatcgccaa ggagttgcgc gactgggtcg
     1141 gcaagcagat cggcccgatc gccaagccga aggacatccg cttcggcgac aacctgccga
     1201 agacccgctc cggcaagatc atgcggcggc tgctgcgctc ggttgcgaac gaccagccga
     1261 tcacccagga cacgtcgacg ctcgagaatc cggcgatctt ggcgcagttg gcggagaaga
     1321 actgatcagt ccgttcgctt cgcgtgcgtc cacccgcacg cgaccgccct cgatcttcgg
     1381 ctcgagtccg tgcacgacgg cgttttcgac cagcggctgc aagctcagcg cgggcagcgg
     1441 gagcgcacga agcgcgtccg gcacatcgat ctcgtagtgc agccgatgcg ccatgcggat
     1501 tgcgatgacg cgcaggtagg cgtcgatcag gtcgatctcc tcgccgagcg tgtgacgctc
     1561 gccgcgcagg ccgccgagcg acgaacgcag gtagtcgatg aacgactcga gcatcagctt
     1621 ggcgcgcggc gggtcggcct cgatcaggcc gacgacattg gccagcgtgt tgaacaggaa
     1681 gtgcggctcg atctgcgcct gcagcaggcg cagttgcgcc tcggtcgcct ggttctcggc
     1741 ctggatgccg gcgccgtcgt cttcgaccgt gaggacgagc gcgccgcgct cgagccgcgc
     1801 cgcgatccgg atcgttccgc cgctgatcag cggctcgagc ccgtgcacga tcgcgttctc
     1861 gaccagcggc tgcaggctga gcgccggca
//
LOCUS       DASVHM010000896         2204 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_499352, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000896 DASVHM010000000
VERSION     DASVHM010000896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499352"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..288)
                     /locus_tag="VF308_16515"
     CDS             complement(<1..288)
                     /locus_tag="VF308_16515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA/Hda family protein"
                     /protein_id="HEX7438308.1"
                     /translation="MKQIPLSIVSEALRTFDNFLPGANLLAFEHLAGLGPGAAPVYLW
                     GASGSGKTHLLQAAAVRVQEQGGLVGWFDAADPTPWTYSEHWALVVMDDCDA"
     gene            complement(292..1158)
                     /locus_tag="VF308_16520"
     CDS             complement(292..1158)
                     /locus_tag="VF308_16520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019560124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7438309.1"
                     /translation="MPGSLHFQTPTALEYFAALVADDASLPLIEAAASIAQDEYPRLD
                     TQGVLAEIDGLAQRLRQRIPPDAVPVQRLRWLNRFFFQELGFGGNANDYYDPGNSYLH
                     AVLDTRRGIPITLALLYIELAMQIGLSAHGVSFPGHFLVKLRMPQGEVIIDPFTGQSL
                     SRDALEEMLLPYKRADAADGADAPLAFFLQAAPARDVLARMLRNLKEIFRSAEDWPRF
                     LAVTERLVVLLPGAWAERRDRGIAYAEMGCDDAAAEDLAAYLEQALDAADRDAIVARL
                     ARLVRGRSPRLH"
     gene            complement(1187..>2204)
                     /gene="murJ"
                     /locus_tag="VF308_16525"
     CDS             complement(1187..>2204)
                     /gene="murJ"
                     /locus_tag="VF308_16525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEX7438310.1"
                     /translation="WGIEPIYALAAGVMLGGALQLAVQVPALLRVGAMPRIGVAPAAI
                     RCAWRHPGVARILTQMAPALMGVSVAQFSMLINTQIASHQGVGAVSWLFYADRLMEFP
                     TALLGVALGVVLIPQLSAAQGRNDGAAYSALLDWGLRLVLLLALPCAVALLVFANALV
                     AVLFQRGAFTAHDVRQTVTALMGYGVGLMGLIGVKILAPGFYARQDTRTPVKIAIAVL
                     VLTQLLNLVFVPFLGHAGLALSIGCGALINAAWLFIGLRRAGAYAPLPGWAPFTVRVL
                     VATALLGALLAWGSGVIDWIGLQDHPWLRVGWLAAFLGGAALLYFAALAAMGLRLEQF
                     ARRG"
BASE COUNT          400 a          760 c          772 g          272 t
ORIGIN      
        1 ggcatcgcag tcgtccatca cgacgagcgc ccagtgctcc gagtacgtcc agggcgtcgg
       61 gtcggcggca tcgaaccagc cgacgaggcc accctgctcc tggacccgga ccgcagcggc
      121 ctgcaagagg tgcgtcttgc cgctgcccga cgcgccccac aggtagaccg gcgcggcacc
      181 cggcccgagc cccgccaggt gttcgaaggc gagcaggttg gccccgggca ggaagttgtc
      241 gaaggtgcgc agggcctcgg agacgatcga caggggaatc tgtttcatcg ctcaatgcag
      301 gcgcggcgaa cgaccgcgca cgagtcgtgc cagacgggcc acgatggcat cgcgatcggc
      361 ggcgtcgagg gcctgctcca aataggccgc gaggtcttcc gccgccgcgt cgtcgcagcc
      421 catttcggcg taggcaatgc cgcggtcgcg gcgttctgcc caggcgccag gcagcaggac
      481 gacgagccgt tcggtcaccg ccaggaagcg cggccagtcc tcggcgctgc gaaaaatctc
      541 cttcaagttg cgcagcatgc gcgccagcac gtcgcgcgcc ggcgcagcct ggaggaagaa
      601 cgcgagcgga gcgtcggcgc catccgcggc gtcggcgcgt ttgtacggca gcagcatctc
      661 ctcgagcgca tcgcgcgaga gcgattggcc ggtgaacgga tcgatgatga cttcgccctg
      721 cggcatgcgc agcttgacca ggaaatggcc gggaaacgaa acgccgtggg cactgagccc
      781 gatctgcatg gcgagctcga tgtagagcag cgcgagagtg atgggtatgc cgcggcgcgt
      841 gtcgagcacc gcgtggaggt agctgttgcc tgggtcgtag tagtcgttcg cattgccgcc
      901 gaaaccgagc tcctggaaga agaaccggtt cagccagcgc aggcgctgga ccggcaccgc
      961 gtcgggcgga atgcgctggc gcagcctttg cgcgaggcca tcgatctcgg ccagcacccc
     1021 ttgggtgtcg aggcgcggat actcgtcctg ggcgatcgac gcggccgcct cgatcagagg
     1081 caggctcgcg tcgtcggcga cgagcgcggc gaaatactcg agcgccgtcg gcgtctggaa
     1141 gtgcaatgag cccggcatcg acgcagttta gagcctgttc ggacccttat ccgcgtcgcg
     1201 cgaactgctc gagtcgcaag cccatcgccg cgagcgccgc gaaatagagc aatgcggcgc
     1261 cgccgaggaa cgccgcgagc cagcccacgc gcagccacgg gtgatcctgc aggccgatcc
     1321 agtcgattac gcccgaaccc caggcgagca acgctccgag cagcgcggtc gcgacgagca
     1381 cgcgcaccgt gaacggcgcc cagccgggca agggcgcgta ggcgccggcg cggcgcaggc
     1441 cgatgaagag ccaggccgcg ttgatgagcg cgccgcagcc gatcgacagc gccagcccgg
     1501 cgtgaccgag gaagggcacg aagacgaggt tgagcaactg cgtcagcacc agcaccgcga
     1561 tcgcgatctt caccggcgtg cgcgtgtcct gccgggcgta gaagccgggc gccaggatct
     1621 tgacgccgat caaccccatc aagccgacgc cgtagcccat cagcgccgtc acggtctgcc
     1681 gcacgtcgtg agccgtgaac gcaccgcgct ggaacagcac cgcgacgagc gcgttcgcga
     1741 acaccagcag cgccaccgcg cacggaaggg cgagcagcaa gaccaggcgc aggccccagt
     1801 cgagcagggc cgaataggcg gcgccatcgt tgcggccctg ggccgccgac agttgcggga
     1861 tcagcaccac gccgagcgcg acgccgagca gcgccgtcgg gaactccatc agccggtccg
     1921 catagaagag ccacgaaacg gccccaacgc cctggtgcga cgcgatctgg gtgttgatca
     1981 gcatcgagaa ctgcgccacc gacacaccca tcagcgccgg agccatctgt gtcaggatcc
     2041 gggccacgcc cgggtgccgc caggcgcacc ggatcgcggc cggggcgacc ccgatgcgcg
     2101 gcatcgcccc gactcgcagc agggccggca cctgcaccgc cagttggagc gcgccgccga
     2161 gcatcacgcc agcggcgagt gcgtagatcg gctcgatgcc ccag
//
LOCUS       DASVHM010000897         3887 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1079889, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000897 DASVHM010000000
VERSION     DASVHM010000897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3887
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1079889"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VF308_16530"
     CDS             <1..223
                     /locus_tag="VF308_16530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEX7438311.1"
                     /translation="DECCGFGGTFSVFEEPVSAKMGHDKVGDHHDAGAEYIVSPDMSC
                     VMHQKGCAQRAGLPLRFIHIAQVLNGARE"
     gene            231..1610
                     /locus_tag="VF308_16535"
     CDS             231..1610
                     /locus_tag="VF308_16535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein B"
                     /protein_id="HEX7438312.1"
                     /translation="MKRVDHAEASSKFIEAKDHADFHDKRLWDLRKKRDAESEAMPEW
                     EQLRSRASAIKEHTLTHLGDYLEEFEKNATANGMVVHWARDAAEHNQIVFEILEQHGA
                     TTLVKSKSMLTDECDMRPFLENRGIEIVETDLGERIQQLDDEPPSHIVVPAVHKLRGD
                     VAEVFGRTIGTDPKNSDIPYLAESQRRHTRPYYLKAQAGMTGANFAIAETGSFVVCTN
                     EGNADLGANLPSLHIASIGIEKLLPKIEHLGVFVRMLSRSALGSPITQITSHFRAPRP
                     GTEMHVVLVDNGRSERLGMADVWYSLKCIRCGACMNTCPVYRRSGGLSYGSTYSGPIG
                     VIIDPTFNLRKYSSLPFASTLNGSCTSVCPVKINIHEQIYKWRQIIAERNQLPMAKRE
                     AMRVAGKILASPRLYRAAVEAAAAGIERLPRFMVYNPFNAWGRQREVPDAPRSTFRQW
                     YLENRGSAQ"
     gene            1607..2227
                     /locus_tag="VF308_16540"
     CDS             1607..2227
                     /locus_tag="VF308_16540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LUD domain-containing protein"
                     /protein_id="HEX7438313.1"
                     /translation="MSSRQFILDRVRRNQPGWRALPSVPSFGRPLADPLAAFGAALAR
                     MGGTLVAAPAGQSLYAFIRARFPEARVICSATSEVEGTRDIASVHHPRELDDVDVGVV
                     RAAFGVAETGSVWLSEREFVVNALGFLSQHLVVLLDPRAIVPNLHDAYRHRGFFDARY
                     SVLMTGPSATADIEGVLIRGAQGIRTLTVIPMAANGAAAIQERRTP"
     gene            2240..2877
                     /locus_tag="VF308_16545"
                     /pseudo
     CDS             2240..2877
                     /locus_tag="VF308_16545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015914622.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015129 - lactate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015727 - lactate transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
     gene            2912..>3887
                     /locus_tag="VF308_16550"
     CDS             2912..>3887
                     /locus_tag="VF308_16550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015011873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HEX7438314.1"
                     /translation="MKRRLAALSCAVASPGALGQSAVVYGLVDVAVEHVTHVGASGGG
                     LNRMASATGSLPSRIGFRASEDLGDGLSAVVVIEQGFAPNAGTFTQGGRAFGRQSYVG
                     FVAPWGSLAVGRQYTMLYWSILDADILGTNIYGSGSLDAYIPNARADNAITYRGTFSG
                     LTVGATFSLGRDSVSAGSPAGTNCPGEGSDARECREWSALLKYDSPAWGAALAVDQIR
                     GGPGAFANLTSSALQDRRLSVNGYVNVANLRLALGLVRRDNDASAVAPRSDLWYLGAL
                     YAATPTLKIDAEAFRLAFKGSANRATLFAGRATYSLSKRTALYATLGHI"
BASE COUNT          637 a         1355 c         1255 g          640 t
ORIGIN      
        1 ggacgaatgc tgcggtttcg gcggcacctt ctcggtgttc gaggaacccg tctcggcgaa
       61 gatgggccat gacaaggtcg gcgaccacca cgatgccggc gccgagtaca tcgtctcgcc
      121 cgacatgtcc tgcgtgatgc accagaaagg ctgcgcccag cgcgccgggc tgccgctcag
      181 gttcatccac atcgcgcagg tgctgaacgg ggcgcgcgag tgagccggtc atgaagcgcg
      241 tcgatcacgc cgaagcctcc tcgaagttca tcgaggccaa ggaccacgcc gacttccacg
      301 acaagcgcct ctgggacctg cgcaagaagc gcgacgccga gagcgaggcg atgcccgagt
      361 gggagcaact gcgctcgcgc gcctcggcga tcaaggagca cacgctcacc catctcggcg
      421 actacctcga ggagttcgag aagaacgcca ccgccaacgg catggtcgtg cactgggcgc
      481 gcgacgcggc cgagcacaac cagatcgtct tcgagatcct cgagcagcac ggcgcgacga
      541 cgctggtcaa gagcaagtcg atgctcaccg acgaatgcga catgcggccg ttcctcgaga
      601 accgcggcat cgagatcgtc gagaccgacc tcggcgagcg catccagcag ctcgacgatg
      661 aaccgccaag tcacatcgtc gtgccggcgg tgcacaagct gcgcggcgac gtggccgagg
      721 tcttcggccg cacgatcggc accgacccga agaacagcga catcccctac ctggccgaga
      781 gccagcgccg gcacacgcgg ccctactacc tgaaagccca ggccggcatg accggggcca
      841 acttcgcgat cgccgagacc ggcagcttcg tcgtctgcac caacgaaggc aacgccgacc
      901 tcggcgccaa cctgccgtcg ctgcacatcg cttcgatcgg catcgagaag ctgctgccga
      961 agatcgagca cctcggcgtg ttcgtgcgca tgctgtcgcg cagcgccctc ggctcgccga
     1021 tcacgcagat cacctcgcac tttcgtgcgc cgcgacccgg caccgagatg cacgtcgtcc
     1081 tggtcgacaa cggccgctcc gagcgcctcg gcatggccga cgtctggtat tcgctcaagt
     1141 gcatccgctg cggcgcttgc atgaacacct gcccggtgta tcggcgcagc ggcgggctca
     1201 gctacggctc gacgtactcg gggccgatcg gcgtgatcat cgatccgacc ttcaacctgc
     1261 gcaaatacag ctcgctcccg ttcgcctcga cgctcaacgg cagctgcacc agcgtgtgcc
     1321 cggtgaagat caacattcac gagcagatct acaagtggcg ccagatcatc gccgagcgca
     1381 accagctgcc gatggccaag cgtgaggcga tgcgagtggc cggcaagatc ctggccagtc
     1441 cgaggctcta ccgcgccgcg gtcgaggccg cggcagcggg catcgagcgc ctgccccggt
     1501 tcatggtcta caaccctttc aacgcctggg gtcgccagcg cgaggtgccg gacgcgccgc
     1561 gatcgacctt ccgccagtgg tacctcgaga accgcggcag cgcgcaatga gcagccgcca
     1621 gttcatcctt gaccgggtgc ggcgcaatca gcccggctgg cgcgccctgc cgtcggttcc
     1681 gagcttcggt cggccgctcg ccgatccgtt ggccgccttc ggcgccgcgt tggcgcgcat
     1741 ggggggcacg ttggtcgctg cacccgcagg gcaatccttg tacgccttca tccgcgcgcg
     1801 cttccccgag gcgcgcgtga tctgttccgc cacgtccgag gtggagggca cgcgggacat
     1861 cgcatcggtg caccaccccc gcgagctcga cgacgtcgat gtcggcgtcg tgagggccgc
     1921 gttcggcgtc gccgaaaccg gttcggtctg gctgagcgag cgggagttcg tcgtcaatgc
     1981 gctcggcttc ctgtcgcagc acctggtcgt gctgctcgac ccgcgcgcca tcgtgcctaa
     2041 ccttcatgac gcgtatcgcc accgcggctt cttcgacgcg cgctattcgg tgctgatgac
     2101 cggcccctcg gcgaccgccg acatcgaagg tgtgctgatc cggggcgcgc agggaatacg
     2161 aacgctcacc gtcatcccga tggccgccaa cggcgcggcc gccattcagg agaggagaac
     2221 tccatgatct ggcaaggtcg gcttgcacca gatggtggag aagatgccgc cggcggtgac
     2281 caagccgacg aaggaggcgg cggtctacac cttcaactgt tgtcggccac cggaaccggg
     2341 atcctgctgg cggcccttgt cggcggcctg ttcatgaaat acaacccgct gcagcttctg
     2401 caggcctacg gtgcgacgat atggaaggtg cgctattcgt tgatcacgat catgctcatg
     2461 ctcggactcg gcacgctgac gcgctattcg gggctggaca ccacgctcgg gctggcgttc
     2521 gccaacaccg gcgtgctcta tccgttcttc gggacgctga tgggttggct cggcgtcgca
     2581 ttgaccggct cggacacggc atccaacgtc ctgttcggcg gcatgcaacg ggtcgccgcc
     2641 gaccagctcg gcctcagctc gaacctgatg ggcgcggcca acagcgccgg cggcgtgatg
     2701 ggcaagatga tcgacgcgca atcgatcgtc gtcgcatcca ccgccacggg ctggttcaac
     2761 cacgaaggcg acatcctgcg cttcgtcttc ttccattcgc tcgcgcttgc cgcgctcgtc
     2821 ggtgtcttcg tgaccttgct cgcctatgtc tatccgttca ccctcctggt tgtctgatgg
     2881 aagtcgccgg tcgccccggc gcgcggttct cgtgaagcgt cggctggcgg ccctctcctg
     2941 cgcggtcgcg tcgcccggcg cgctcggcca gtcggcggtg gtctacgggc tcgtcgacgt
     3001 cgccgtcgag cacgtcacgc acgtcggcgc gtcgggcggc ggtctgaacc gcatggcgag
     3061 cgcgaccggg tcgttgccgt cgcggatcgg ctttcgcgcc agcgaagatc tcggcgatgg
     3121 cctgagcgca gtggtcgtga tcgagcaggg attcgcgccg aacgcgggaa cgttcacgca
     3181 gggcggtcgc gccttcgggc gccagtcgta cgtcggcttc gtcgcgccat ggggctcgct
     3241 ggcggtcggc cgccagtaca cgatgctcta ctggtcgatc ctcgacgccg acatcctcgg
     3301 caccaacatc tacggctccg gttcgctcga tgcctatatc ccgaacgcgc gcgccgacaa
     3361 cgcgatcacc taccgcggaa cgttttcggg gctgaccgtc ggagcgacgt tcagcctggg
     3421 tcgcgacagc gtcagcgcgg gcagtcctgc gggcaccaac tgcccgggcg aaggcagcga
     3481 tgctcgggag tgccgtgaat ggtcggccct gctgaagtac gacagccccg catggggcgc
     3541 cgcgctcgcc gtcgaccaga tccgcggcgg ccccggcgca ttcgccaacc tgaccagcag
     3601 cgcccttcag gacaggcgct tgtccgtcaa cggatacgtc aatgtcgcga atctccgcct
     3661 cgccctgggc ctcgtcaggc gagacaacga cgcaagcgcc gtcgcgccgc gcagtgacct
     3721 ctggtatctg ggcgccctct acgcggcgac cccgacgctc aagatcgacg ccgaagcgtt
     3781 tcggctcgcc ttcaagggaa gcgccaatcg ggcaacgctt ttcgccggcc gtgcgacgta
     3841 cagcctgtcc aagcgcactg cactttatgc gacgctcggg cacatcg
//
LOCUS       DASVHM010000898         3829 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_140290, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000898 DASVHM010000000
VERSION     DASVHM010000898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3829
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140290"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..893
                     /locus_tag="VF308_16555"
     CDS             <1..893
                     /locus_tag="VF308_16555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX7438315.1"
                     /translation="PLRGRIAALRRYIDELFGNRAFDATFLPVDCAGVPAEWVLSPGA
                     DGARRTLYIHGGGFVIGSPRSHRTLTTRFSAMTGGAVLAIDYRLMPEHRRMAGVEDCR
                     TAYRWMLDNGPDGPQAAQAVFVAGESAGGNLALALIAWVRDQGLRAPDAAVALSPATD
                     GTLASPSLRANRRSDAMLGPLYGPLARLPQWVLLWMALIANRINPRNPVISPVYGDLS
                     NLPPVLVHASEAEMLLDDGRRYVNRARAAGSPATLQTWGHVVHAWQIFNPELPEAVDA
                     LEEIGKFLAAAAPPAGAVPR"
     gene            989..2461
                     /locus_tag="VF308_16560"
     CDS             989..2461
                     /locus_tag="VF308_16560"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="wax ester/triacylglycerol synthase family
                     O-acyltransferase"
                     /protein_id="HEX7438316.1"
                     /translation="MKALSGLDGAFLHLETPETPMHVGSLHLFDLPPGYRGDFHANIK
                     RQMKSRIHLAPVFTRKLAPMPLQFANPVWFEDDRVDLDHHVHRVTLPHPGTHAQLEDC
                     AGRLHSELLDRSRPLWRLYVFDGLESGQAAYYIKVHHAVLDGQAGVLLAQALFDVTAK
                     ARQLPHGSGAQGEHPGLAALAAAALKHDAGQYIKLLRHLPDVVKTLAGLFRAAPGEVK
                     GRLGQNFSFGPKTPLNVAVTGERGFAAVSIPIATLKALAQAHDAKLNDIVLALCGGAL
                     RRYLARHGGLPKKPLIASMPISLRKPGNTDFTTQATLSLVNLNTHIADPLKRLRAIRD
                     ATGAVKALAQRANSLIPTDFPSIGVPWVLHALASLYGRSSVASAMPPIANVVISNVAG
                     PQVPLYAAGARMATYWPLSIVEHGLGLNITVMSYAGAMGFGFTTARAAVPDARELSAA
                     LLEALDELVARSRPAAKKKTAPGKSSSRAAGSTARARPAG"
     gene            complement(2433..3824)
                     /locus_tag="VF308_16565"
     CDS             complement(2433..3824)
                     /locus_tag="VF308_16565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="wax ester/triacylglycerol synthase family
                     O-acyltransferase"
                     /protein_id="HEX7438317.1"
                     /translation="MNCSVNDVLLACAASAIGGYLRERLQSRFLSYLRFRQKAVQEAL
                     LSHWVDDDDFDIDRHLVREKLVRKRGQSERSALQARVSELAATPLDPAHPLWQIHLID
                     RYEDGSALIVRIHHCIADGIALNSVLLSIADGGTDLHRPARDGGQDADDGDWLADAVV
                     RPLTDVTVKAIGMYGDGVVKAMELLAHPQRSADDSVKLARAGYRVLRDAAALALLADD
                     SPTLLKGPLSGDKVVAWCEPLPLADVKAVGKAMNCSVNDVLLACAASAIGGYLRERGE
                     DPAGKEIRAMVPVNLRPLDEAWQLGNRFGLAPVVLPIGIDNAVECLYAVRARMSELKG
                     SYQPLLAYALLAVSGVLTKSLQDALSDVFLKKTTAVMTNVPGPTEPVVFCGSTLRQSI
                     FWVPSSGNVGVGVSIVSYAGGVQFGLIADRRRCPDPQRIIDRFAPEFEKLLLLTLMLP
                     WANEVTRLAVPAQ"
BASE COUNT          586 a         1378 c         1291 g          574 t
ORIGIN      
        1 ttccgctcag aggacgcatc gcggcactgc gccggtacat cgacgagctg ttcggcaatc
       61 gcgcgttcga cgccaccttc ctgccggtcg attgcgcggg cgtgcccgcg gagtgggtgc
      121 tctcgcccgg cgccgacggc gcccggcgca cgctctacat ccacggcggc ggattcgtca
      181 tcggcagccc gcgcagccat cgcacgctga ccacgcggtt ctccgccatg accggcggtg
      241 ccgtgctcgc gatcgactat cgcctgatgc ccgagcatcg ccgcatggcc ggtgtcgagg
      301 attgccggac ggcctaccgc tggatgctcg acaacggccc cgatggtccg caagccgcgc
      361 aggcggtgtt cgtcgccggc gaatccgccg gcggcaacct ggcgctggcg ctgatcgcat
      421 gggtccgcga tcaggggctg cgggcacccg acgccgcggt cgcgctgtcg cccgcgaccg
      481 acggcacgct cgcgagcccg agcctgcgcg ccaaccggcg cagcgatgcg atgctcggcc
      541 ccctgtacgg ccctctcgcg aggctgccgc agtgggtgct gctgtggatg gcgttgatcg
      601 ccaaccggat caatccgaga aacccggtga tctcacccgt gtacggcgac ctgtccaacc
      661 tcccgcccgt gctggtgcat gcgagcgagg cggaaatgct gctcgacgac ggtcgccgct
      721 acgtcaaccg cgcccgggcg gccggctcgc cggcgacatt gcagacgtgg ggccacgtcg
      781 tgcatgcctg gcaaatcttc aaccccgagc tgcccgaggc ggtcgacgcg ctggaagaga
      841 tcggcaagtt cctcgccgcc gccgcccctc cggccggcgc tgtgcctcgc tgaagcgcga
      901 ccgaacgaac cctgtcgcgg atcaaatgcg ccttgtcgtg cgtcccccat gatcgatacc
      961 ggactttgcc ccgccaccgg atgaaagcat gaaagccctg agcggattgg atggcgcctt
     1021 cctccatctc gagacccccg aaacgccgat gcacgtcggc tcgttgcacc tgttcgacct
     1081 gccgccgggg taccggggcg acttccacgc caacatcaag cggcagatga agtcgcgcat
     1141 ccatcttgcg ccggtcttca cgcgcaagct cgcgccgatg ccgcttcagt tcgccaatcc
     1201 ggtctggttc gaagacgacc gcgtcgatct cgaccaccac gtgcatcggg tcacgctgcc
     1261 gcaccccgga acgcacgccc agctcgagga ttgcgccggc aggctgcact cggagctgct
     1321 cgatcgcagc cgcccgctct ggcgcctcta cgtcttcgac ggcctggaga gcggtcaggc
     1381 ggcctactac atcaaggtcc accacgcggt cctcgacggc caggccggcg tgctgctggc
     1441 gcaggcgctg ttcgacgtga ccgccaaggc gcggcagctc ccgcacggct ccggcgcgca
     1501 gggcgagcat ccgggcctgg ccgcgctcgc cgcggccgcg ctcaagcacg acgccggcca
     1561 gtacatcaag ctgctgcgcc acctgcccga tgtcgtgaag acgctcgcgg gcctgttccg
     1621 ggccgcgccc ggcgaggtca agggccggct cgggcagaac ttctcgttcg gtccgaagac
     1681 gccgctcaac gtcgcggtga ccggcgaacg cggcttcgcg gcggtgtcga tcccgatcgc
     1741 cacgctcaag gcgctggccc aggcgcacga cgccaagctc aacgacatcg tgctggcgct
     1801 gtgcggcggc gccctgcgcc gctacctggc caggcacggc ggcctgccga agaagccgct
     1861 gatcgcgtcg atgccgatct ccctgcgcaa gcccggcaac accgacttca cgacgcaggc
     1921 gacgctgagc ctggtcaacc tgaacaccca catcgccgat ccgctgaagc gcctgcgcgc
     1981 catccgcgac gcgacgggtg ccgtcaaggc gctcgcccag cgcgccaaca gcctgatccc
     2041 gaccgacttc ccgtcgatcg gcgtgccttg ggtcctgcac gcgctggcat cgctctacgg
     2101 acgatccagc gtagccagcg ccatgccgcc gatcgccaac gtcgtgatct ccaacgtcgc
     2161 gggaccgcag gtgccgctct atgcggcggg cgcgcgcatg gccacctact ggccgctgtc
     2221 gatcgtcgag cacggcctcg ggctcaacat cacggtaatg agctacgcgg gcgccatggg
     2281 attcggattc acgacggcac gcgccgccgt tcccgatgcg cgcgagctgt cggcggcgct
     2341 gctggaggcg ctcgacgagc tcgtggcgcg gagccggccc gcggcgaaga agaagacggc
     2401 gccgggcaag agctccagcc gcgcagcggg ctctactgcg cgggcacggc cagccgggtg
     2461 acctcgttcg cccacggcag catcagcgtc agcagcagca gcttttcgaa ctccggcgcg
     2521 aagcggtcga tgatcctctg cgggtcgggg cagcgccggc gatcggcgat caggccgaac
     2581 tgcacgccgc ctgcgtacga gacgatgctc acgccgacgc cgacgttgcc cgacgacggc
     2641 acccagaaga tgctctgccg caaggtgctg ccgcagaaca ccacgggctc ggtcgggccg
     2701 ggaacgttcg tcatcaccgc ggtggtcttc ttcaggaaga cgtcggacag cgcatcctgc
     2761 agcgacttgg tcagcacgcc cgacaccgcc aggagcgcgt aggcgagcag cggctggtag
     2821 ctgcccttga gctcgctcat gcgcgcgcgc acggcgtaga ggcactcgac cgcgttgtcg
     2881 atgccgatcg gcaacaccac cggcgccagg ccgaagcggt tgccgagctg ccaggcctcg
     2941 tcgagcggac gcaggttcac cggcaccatg gcacggatct ccttgcctgc ggggtcttcg
     3001 ccgcgctcgc gcaggtagcc gccgatcgcg cttgcggcgc atgcgagcag cacatcgttg
     3061 accgagcagt tcatggcctt gccgaccgcc ttgacgtcgg cgagcggcag cggctcgcac
     3121 cacgccacga ccttgtcgcc gctgagcggg cccttgagca gggtcggcga atcgtcggcc
     3181 aagagggcga gcgcggcggc gtcgcggagg acccggtagc cggctcgcgc cagcttcacg
     3241 gagtcgtccg ccgatcgttg cgggtgggcc aggagctcca tcgccttcac cacgccgtcg
     3301 ccgtacatgc cgatcgcctt gacggtgaca tcggtgagtg gcctgaccac cgcgtctgcg
     3361 agccagtcgc cgtcgtcggc atcttgcccg ccatcgcgcg ccggccggtg caggtcggtg
     3421 ccgccgtcgg cgatcgacag cagcaccgag ttcagggcga tgccgtcggc gatgcagtgg
     3481 tggatgcgca cgatcagcgc gctgccgtcc tcgtagcgat cgatcaggtg gatctgccac
     3541 agcgggtgcg ccgggtccag cggggtggcg gcgagctcgc tgacacgtgc ctggagggca
     3601 gaacgttcgc tctggccgcg cttcctcacc agcttttcgc ggacgaggtg gcggtcgatg
     3661 tcgaaatcgt cgtcgtcgac ccagtgggag agcaaggcct cctgaacggc cttctggcgg
     3721 aatcgcaggt aagagagaaa ccgcgattgg aggcgctcgc gcaggtagcc gccgatcgcg
     3781 cttgcggcgc atgcgagcag cacatcgttg accgagcagt tcatggcct
//
LOCUS       DASVHM010000899         3559 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_499724, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000899 DASVHM010000000
VERSION     DASVHM010000899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3559
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499724"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            169..774
                     /locus_tag="VF308_16570"
     CDS             169..774
                     /locus_tag="VF308_16570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005664311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEX7438318.1"
                     /translation="MSIRCEDIVSHPEFRRLSTLAGIAVDLRYASLRNFVGRDLYGGL
                     DCAWLHRQAAAGLEQAVARLAEVAPGHRLLVLDALRPHRVQIQLWDFLDGTGLRQYVA
                     DPARGSIHSFGMALDATLIDAEGRELDMGTGFDEMTERSHPKLEAGHLASGVLTHEQH
                     RARELLRGALGAGGFRGIDNEWWHFEMLDRQHLRQHFVRVD"
     gene            complement(1052..1675)
                     /locus_tag="VF308_16575"
     CDS             complement(1052..1675)
                     /locus_tag="VF308_16575"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEX7438319.1"
                     /translation="MDELVRLSAGAPASALLLAAMIAFSALGLFVRPALIERNLLRPH
                     GLAQRGDYHTLVTSGFIHADLAHLLLNGFTFWAFGFGLERRLGTASFVALYFIGLLAS
                     SIATWLIHRRQPGYASLGASGAILAVLFASIIVAPTSSIFILPLPVPIPAPLFAVGYL
                     AYSVIASRARVGRVNHDAHVAGAIAGLAYMAITMPGSIERAFGAWLG"
     gene            1814..2875
                     /locus_tag="VF308_16580"
     CDS             1814..2875
                     /locus_tag="VF308_16580"
                     /inference="COORDINATES: protein motif:HMM:NF028057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HEX7438320.1"
                     /translation="MKARLFCRIVGALGLGLSALAAQAQGRPPTTEQLGKDPGALRQE
                     AEQQRAQERAQQQQSNQQQADQQWNDTLRQQQGRAAADAAQGQAVLRTWQQRPPLAPE
                     HNPLLGRWESLGSGKRAAAPGVSPEMANLAAALLGGITGGMCDSMLGRGTIEFRPAGL
                     VAIGHDGREHAMYRAQYRGGGSRVVVLPQGGTTFTHMIIDFAGPDHATVAAVGCALAR
                     AGGGGVRATAANTSTATEGPATNQWVLLGSTVANGGMDVYVARSTIRRLGALAQMSDL
                     WDFKTPHVFEGRSFLSTRNQYEYDCVTSRRRMLSTTGFSGHMGQGAVVGSGKSAAAWE
                     EIATTGPIHDHWKIACTRQ"
     gene            complement(2891..>3559)
                     /locus_tag="VF308_16585"
     CDS             complement(2891..>3559)
                     /locus_tag="VF308_16585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013958837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEX7438321.1"
                     /translation="DAATKAQLDAWGAGKFDPRHNVDGMSKPVVIPPAFGLEGVHRVT
                     YTGDGTELAYWNRYVAVAEMGGLGTVTEPRLNLSITHGNVDLVTSKLPALQAYQLSIA
                     APAAPAGSFDPVAAARGQQIFAGAGGCAACHSGALFTDANSTLHPPADSMAEPESPSY
                     ASRSATKLYRTTPLKGVWQHAPYFHDGSAATLDQVVATYNTRRSLGLGAQQSADLVQY
                     LKSL"
BASE COUNT          538 a         1208 c         1306 g          507 t
ORIGIN      
        1 cattgccgga acgatcattc gccagctgcc gaacatgccc ggaccgatgg ctcttgtcgg
       61 ccgttccgga accgcaccgc gcggtaacct gcgccgctga agcgcggcgg cgcgctgctc
      121 gatctcgtgg cagtgactcg agcggcaggg cttcatcact ctctcatcat gtccatccgc
      181 tgcgaagaca tcgtctcgca tccagagttt cgccgcctgt cgaccctcgc cggcatcgcg
      241 gtggacctgc gctacgcgag cctgcgcaat ttcgtcggcc gcgacttgta cggggggctc
      301 gattgcgcct ggctgcatcg ccaggccgcg gcaggcctgg agcaggcggt cgcgcggctc
      361 gctgaagtgg cgccgggcca tcggctgctg gtgctcgacg cgcttcgccc gcaccgcgtc
      421 cagatccagc tctgggactt cctcgacggg acgggcctgc gccagtacgt cgccgacccg
      481 gcgcgcggct cgatccactc gttcggcatg gcgctggacg cgacgctgat cgacgccgag
      541 ggccgcgagc tcgacatggg caccggcttc gacgagatga cggagcggtc gcatccgaag
      601 ctcgaggccg ggcacctcgc gagcggcgtg ttgacccacg agcagcaccg ggcgcgcgag
      661 ctgttgcgcg gcgcgctggg cgcgggaggc tttcgcggga tcgacaacga gtggtggcac
      721 ttcgaaatgc tcgaccggca gcacttgcgc cagcacttcg tcagggtcga ttgatctgca
      781 gtgcggcgat gtccatgcgg cgggccggca ggctcgcgag cggctagccc ggccgacgcg
      841 gcgtgccggc cctcgtttgc gcaacaccgg cgctgcgctg ctggcgctcc agcctcttca
      901 gcgccttggc ccgcttctgc ttgattcggc ggataccgcg gtgcctgtct gcgctcatgt
      961 cggtgctccc ggtggcgtct cggaatgccg aggttgtaca cccagctgaa atcgcaggcg
     1021 gagttcggtc gagcgtcgtc tctcctgccg ctcagccgag ccacgcgccg aacgcgcgct
     1081 cgatcgagcc cggcatcgtg atcgccatgt acgcgagccc ggcgatcgcg ccggcgacgt
     1141 gcgcgtcgtg gttcacgcgg ccgacgcggg cgcggctggc gatcacgctg taggccaggt
     1201 agccgaccgc gaacagcggc gccgggatcg gcaccggcaa cggcaggatg aagatcgacg
     1261 acgtcggcgc gacgatgatc gaggcgaaca gcacggcgag gatcgcgccc gatgcgccca
     1321 ggctcgcgta gccgggctgg cgccggtgga tgagccaggt cgcgatgctg ctggcgagca
     1381 ggccgatgaa atacagcgcg acgaagctcg ccgtgccgag gcggcgctcg aggccgaagc
     1441 cgaaggccca gaacgtgaag ccgttcagga gcaggtgcgc caggtcggcg tggatgaagc
     1501 cgctggtgac gagcgtgtgg tagtcgccgc gctgcgcgag gccgtgaggt cgcagcaggt
     1561 tgcgctcgat cagcgcgggc cgcacgaaca ggccgagcgc gctgaaggca atcatcgccg
     1621 ccagcagcag cgccgaagcc ggcgcgccgg cgctgaggcg aacgagctcg tccatgtccg
     1681 caccttagcg cgctccgggc ctgcagcggt tccgatggcg cagtaacgct cgggtaacgg
     1741 caagcggata aaaagacctt ggctgccaca gccgaagctg ccggtcgcgg gatgaaccgg
     1801 cgaggagtcc tccatgaagg caaggctttt ctgcaggatc gtcggtgcat tggggctcgg
     1861 gctgtcggcg ctggcggcac aggcgcaagg ccgcccgccc accaccgagc aactcggcaa
     1921 ggacccgggc gccttgcgcc aggaggccga gcaacagcgc gcccaggagc gcgcgcaaca
     1981 acagcaaagc aaccagcagc aggccgacca gcagtggaac gacacgctgc gccagcagca
     2041 gggccgcgcc gcggccgacg ccgcgcaggg ccaggccgtg ctgcgcacgt ggcagcagcg
     2101 gccgccgctc gcgcccgagc acaaccccct gctcggccgc tgggagtcgc tcgggtccgg
     2161 caagcgggct gccgcgcccg gcgtttcgcc cgagatggcc aacctcgcgg ccgcgctgct
     2221 cggcggcatc actggcggca tgtgcgactc gatgctcgga cggggcacga tcgagttccg
     2281 gcccgcgggg ctggtcgcga tcggccacga cggccgcgag cacgcgatgt accgcgccca
     2341 gtaccgcggc ggcggctcgc gcgtcgttgt cctgccgcag ggcggcacca cgttcacgca
     2401 catgatcatc gacttcgccg gcccggacca cgcgacggtc gcggcggtgg gctgcgcgct
     2461 ggcgcgcgcc ggaggcggcg gcgtgagggc gacggcggcg aacacgtcca ccgccacgga
     2521 aggaccggcg acgaatcagt gggtgctgct gggatccacg gtcgcgaacg gcggcatgga
     2581 cgtctacgtc gcgcgctcga cgatccgcag gttgggcgcg ttggcgcaga tgtcggacct
     2641 gtgggacttc aagacccccc acgtgttcga gggcaggtcg tttctgtcga cgcgcaacca
     2701 gtacgagtac gactgcgtca catcgcgaag acgcatgctg tcgaccaccg gcttctccgg
     2761 acacatgggc cagggggccg tcgtgggctc gggcaaatcg gccgccgcgt gggaggagat
     2821 cgcgacgacc gggccgatcc acgaccactg gaagatcgcc tgcacgaggc agtagggcgg
     2881 cgtctgccca tcagagcgac ttcaggtact gcacgaggtc ggccgactgc tgcgcgccga
     2941 ggccgagcga cctgcgcgtg ttgtaggtgg cgaccacctg gtccagcgtc gccgccgagc
     3001 cgtcgtggaa gtacggggcg tgctgccaga cgcctttcag cggcgtcgtg cgatagagct
     3061 tcgtcgccga gcgcgaggcg tagctcggcg actcgggctc ggccatcgag tcggccggcg
     3121 gatgcagcgt gctgttcgcg tcggtgaaga gcgcgccgct gtggcaggcg gcgcaaccgc
     3181 cggcgccggc gaagatctgc tggccgcgcg ccgcggccac ggggtcgaag ctgcctgccg
     3241 gtgcggcggg cgcggcgatc gacagctgat acgcctgcaa ggcgggcagc ttgctcgtca
     3301 cgagatcgac gttgccgtgc gtgatgctca ggttcaggcg cggctcggtg accgtgccga
     3361 ggccgcccat ctcggcgacg gcgacatagc ggttccagta cgcgagctcg gtgccgtcgc
     3421 cggtgtaggt gacgcggtgc acgccctcga gaccgaacgc cggcgggatg acgaccggct
     3481 tgctcatgcc gtcgacgttg tggcgcggat cgaacttccc cgcaccccac gcgtcgagct
     3541 gcgccttggt cgccgcgtc
//
LOCUS       DASVHM010000900         2000 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_211981, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000900 DASVHM010000000
VERSION     DASVHM010000900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211981"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..287)
                     /locus_tag="VF308_16590"
     CDS             complement(<1..287)
                     /locus_tag="VF308_16590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018911778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7438322.1"
                     /translation="MAQPQRPAGFDRRRFLRLFTAVMLPMFLAAVDQTLLATATPVIS
                     RDLGGLRDTSWLAVAYLLASVVTVPLYGQLGDRLGRRRVLTGAIALFSLGSL"
     gene            complement(288..737)
                     /gene="dut"
                     /locus_tag="VF308_16595"
     CDS             complement(288..737)
                     /gene="dut"
                     /locus_tag="VF308_16595"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012417083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEX7438323.1"
                     /translation="MTQIDLKVLDARIEAHLPVYSTPGSAGLDLRACIDAPLVIEPGA
                     AQLIPTGLAIHIGDPGLAALLLPRSGLGHKHGIVLGNLVGLIDSDYQGPLMVSCWNRG
                     RVAFTVQPMERIAQLVIVPVVQASFRVVDEFDTSDRGVQGFGSTGRA"
     gene            complement(799..1998)
                     /gene="coaBC"
                     /locus_tag="VF308_16600"
     CDS             complement(799..1998)
                     /gene="coaBC"
                     /locus_tag="VF308_16600"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015013332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEX7438324.1"
                     /translation="MVLGLSGGIACYKSAELVRELVKAGATVQVVMTEAAERFITALT
                     LQALSNRTVYTSQWDSREPNAMAHINLTRDADAVLVAPASADFMARLVHGRADELLSL
                     MCLARPIERCPLLLAPAMNREMWAHPATQRNVAQLRADGTTLLGPASGDQACGEIGDG
                     RMLEPEELLADLIAFFQPKLLLGRSVLITAGPTFEPIDPVRGLTNRSSGKMGFAIARA
                     AAEAGAEVTLVAGPVHLPTPRGVRRIDVGSAREMFDAVLPEASGHDLFIATAAVADWR
                     PAALAEQKIKKGRDQVAPALDLVENPDILAAVAALGKSANGRPYCVGFAAESHDLIRH
                     ARAKLQSKGVPMIVANLGPATFGQDDNTLTIVEATGKRELARADKLTLARQLVGEIAA
                     RLPPRSP"
BASE COUNT          314 a          676 c          729 g          281 t
ORIGIN      
        1 agcgagccga gcgagaacag cgcgatcgca ccggtgagca cccggcgccg gccgagccgg
       61 tcgccgagct ggccgtacag gggcaccgtg acgacggagg cgagcaggta cgcgaccgcc
      121 agccacgagg tgtcgcgcag accgccgagg tcacggctga tgaccggcgt cgcggtcgcg
      181 agcaaggtct ggtcgaccgc cgccaggaac atcggcagca tgaccgccgt gaacaggcgc
      241 aggaagcggc gcctgtcgaa accggccgga cgctgcggct gcgccattca ggctcttccg
      301 gtcgaaccga atccctgcac accccggtcc gatgtgtcga actcgtcgac gacgcgaaag
      361 ctcgcctgca cgaccggcac gatcaccagc tgcgcgatcc gctccatcgg ctgcaccgtg
      421 aaggccacgc ggccgcgatt ccagcagctc accatcaagg gaccctgata gtcggagtcg
      481 atcaggccga cgaggttgcc gagcacgatg ccgtgcttgt gaccgagacc cgaacgcgga
      541 agaagcagcg cggccaggcc gggatcgccg atgtggatcg ccagaccggt ggggatcagt
      601 tgcgccgcgc cgggctcgat gacgagcggc gcatcgatgc aggcgcgcag gtcgaggccg
      661 gcactgccgg gcgtggaata gacagggagg tgcgcttcaa tccgcgcatc cagcactttc
      721 aggtcgatct gggtcatggc gcatctcggc tcgggcgagc cgcggggagt gggacgaggg
      781 ccgggcgcaa gcgcagcgtc agggcgaacg cggcggcagg cgtgccgcga tttcgccgac
      841 gagctggcgc gcgagggtga gcttgtcggc gcgcgcgagc tcgcgcttgc cggtcgcctc
      901 gacgatcgtc agggtgttgt cgtcctgtcc gaatgtggcg ggcccgaggt tggcgacgat
      961 catcggcaca cccttgcttt ggagcttcgc gcgcgcgtgc cggatgaggt cgtggctctc
     1021 ggccgcgaag ccgacgcaat aaggccggcc gttcgccgat tttccgagag ccgcgaccgc
     1081 agcgaggatg tccgggttct cgaccaggtc gagcgccggg gcgacctggt cgcgcccctt
     1141 cttgatcttc tgctcggcga gcgcggccgg ccgccagtcg gcgaccgccg cggtcgcgat
     1201 gaagagatcg tggccggacg cctcgggcag caccgcatcg aacatctcgc gcgcgctgcc
     1261 gacgtcgatc cggcgcactc cgcgcggggt cggcaggtgc accggcccgg cgaccagcgt
     1321 cacctcggcc ccggcctcgg ccgcggcccg cgcgatcgcg aaacccatct tgccgctcga
     1381 gcggttggtg aggccgcgca ccggatcgat cggctcgaag gtcgggccgg cggtgatcaa
     1441 cacggatcga cctagcagca gcttgggctg gaagaaggcg atcagatcgg cgagcagttc
     1501 ctcgggctca agcatgcggc catcgccgat ttcgccgcag gcctggtcgc cgctcgccgg
     1561 gccgagcagg gtcgtgccgt cggcgcgcag ctgcgcgacg ttgcgttgcg tcgccggatg
     1621 cgcccacatc tcgcggttca tcgccggggc gagcagcagc gggcaacgct cgatcggccg
     1681 cgccagacac atcaggctga gcagctcgtc ggcgcgcccg tgcacgagcc gggccataaa
     1741 gtcggcgctc gccggcgcga cgagcaccgc atcggcatcg cgcgtgaggt tgatgtgcgc
     1801 catggcgttc ggctcgcggc tgtcccattg gctggtgtag accgtgcggt tcgaaagcgc
     1861 ctgcagcgtc agcgccgtga tgaagcgctc ggccgcctcg gtcatcacga cctggaccgt
     1921 cgcgccggcc ttgaccagct cgcgcacgag ttcggccgac ttgtagcagg cgatgccgcc
     1981 cgaaaggccg agcacgatgt
//
LOCUS       DASVHM010000901         2574 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_283387, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000901 DASVHM010000000
VERSION     DASVHM010000901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283387"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..709
                     /locus_tag="VF308_16605"
     CDS             <1..709
                     /locus_tag="VF308_16605"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEX7438325.1"
                     /translation="LRGVAFDFRVKAKDAHKRTWDRLFFAGSTLAAVAQGWMLGRYVS
                     GFGTGWNYPLFAAAIAVALPMAYVLMGATWLIMKTEGELQARAIQWARIAWAPMVGGL
                     LLISMATPWVSATVRQRWFALPEIIALSAIPLMSGVSLLAVRSLLATRHVRGPVCWLP
                     FTLLILVFVLGFFGLAYSLYPYVVLDRLTVWQAASSAEALKVILLGACISVPAIAGYT
                     VFSYRVFRGKTGELKYA"
     gene            777..>2574
                     /locus_tag="VF308_16610"
     CDS             777..>2574
                     /locus_tag="VF308_16610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX7438326.1"
                     /translation="MSASTPALPLDMRSRRSRRLRGLPRWGAALVLVAAAAYAGHEIA
                     LEAGMSRLREAAEHRLDMMASGLDADLARFDYLPALLEMTPAVAALLDTPADPQLRAA
                     ANRYLNGVNATVGAEMLYVLDRSGTSVAASDWDQPGTTIGQDLSFRPYVSDAMAHGRG
                     HFYGVGITSGKPGYYLSYALGRGQAVRGVAAVKIDIEEVESAWRKLPGDVLLIDERGV
                     VVLSTRAEWKYRPLAALNATQRAEVLRTRPYGDAPLEPLRWTKLKPLAPNTEVMDLEG
                     ATLLASTRPISRAAWRLVALDDLAPTHAGARYAAITASLAMSVLLLIAVTLWQRRRAV
                     RQKLASQAALQAAHDSLESTVIARTAELRAAQSDLVHAGKMGVLGQMSAGMVHELNQP
                     LTALRTLSDSATLLLDHERFDEARANLQRITGMVDRLARLTSRLKDFSHKSELPAQAV
                     PLLRSISDAQALLDADSKAHGICVEIEVRPPDLAVMADDATINSVLVNLMRNAIDAMQ
                     GSPKRVLRVTARGEGDRAIVAVTDTGPGIRPDILARMFEPFVSSKPAGSGLGLGLVIS
                     AQLVRAVGGTLRASNRDEGGASFIVNLPSAPLK"
BASE COUNT          370 a          890 c          893 g          421 t
ORIGIN      
        1 gctgcgcggc gtcgccttcg acttccgcgt caaggccaag gacgcgcaca agcggacctg
       61 ggatcgcctg ttcttcgccg gctcgacgct cgccgccgtg gcgcagggct ggatgctcgg
      121 ccgctacgtc agcggcttcg gcaccggctg gaactatccg ctcttcgccg cggcgatcgc
      181 ggtcgcgctg ccgatggcgt atgtgctgat gggcgcgacc tggctgatca tgaagacgga
      241 gggcgaattg caggcgcgtg cgatccagtg ggcgcgaatc gcctgggcgc cgatggtcgg
      301 cgggctgctg ctgatctcga tggccacgcc gtgggttagc gcaaccgttc gccagcgctg
      361 gttcgccctg ccggaaatca tcgccttgtc ggcgattccc ctgatgagcg gtgtgagcct
      421 gctcgcggta cgcagccttc ttgcgacgcg ccatgtgcgg ggccccgtgt gctggctgcc
      481 tttcacgctg ctgatcctcg tcttcgtcct cggcttcttc ggcctcgcgt acagcctcta
      541 cccctacgtg gtactcgatc gattgacggt ctggcaggcc gcgagcagcg cggaggcgct
      601 gaaagtcatc ctgctcggcg cctgcatctc ggtccccgcg atcgccggct ataccgtctt
      661 ctcgtaccgc gtgttccgcg gcaagacggg cgagctgaag tacgcgtgag ccggggtcga
      721 ccggccgcgc tgcggtattg cttgccggcg cggagcgggg gcacgatgat ttgcacatga
      781 gtgcatccac gccggcgctc ccgctcgaca tgaggtcgcg tcgctcgcgg cgcttgcgcg
      841 gcctgccgcg ctggggagcg gcgctggtcc tggtcgccgc ggcggcctac gccggccacg
      901 agatcgcgct cgaggccggc atgtcgcgac tgcgcgaagc ggccgagcac aggctcgaca
      961 tgatggcgag cggcctcgac gccgacctcg cccggttcga ctacttgcct gcattgctcg
     1021 agatgacgcc ggcggtcgcg gcgttgctcg acacgcctgc cgacccgcaa ttgcgagccg
     1081 cggcgaaccg ctacctgaac ggcgtgaacg cgacggtcgg cgccgagatg ctgtatgtgc
     1141 tcgaccgcag cggcacgtcg gtcgcggctt cggactggga ccagccgggc accaccatcg
     1201 gccaggatct ctcgttccgc ccctacgtca gcgatgccat ggcgcacggg cgcggccact
     1261 tctacggcgt cggcatcacg agcggcaagc cggggtatta cctgtcgtac gcgctgggcc
     1321 gcggccaggc ggttcgcggt gtcgccgccg tgaagatcga catcgaggaa gtcgagagcg
     1381 catggcggaa gctccctggc gacgtgctgc tgatcgatga gcgtggcgtc gtcgtcctct
     1441 cgacgcgcgc cgaatggaag taccggccgc tcgccgcgct gaacgcgacc cagcgtgccg
     1501 aggtgctgcg gacgcgcccc tacggcgacg cgccgctgga accgctgcgt tggacaaagc
     1561 tgaagccgct cgcgcccaac acggaggtca tggacctgga aggcgccacg ctgctcgcgt
     1621 cgacgcggcc gatttcgcgc gcggcctggc ggctggtcgc gctcgacgac ctggcaccga
     1681 cgcatgcggg agcacgctac gcggccatca ccgcgagcct ggcaatgtcg gtcctgttgc
     1741 tgatcgcggt gacgttgtgg caacgccgcc gggcagtgcg ccagaagctc gcaagccagg
     1801 ctgccctgca ggcggcgcac gacagcctcg agtccaccgt tatcgctcgc accgccgagc
     1861 tgcgcgcggc ccagagcgac ctcgtgcacg ccggcaagat gggcgtgctc ggccagatgt
     1921 cggccggcat ggtgcacgag ctgaaccagc cattgacggc gctacgcacc ttgtcggaca
     1981 gcgcaaccct gctgctcgat cacgagcggt tcgacgaggc ccgagccaac ctgcagcgca
     2041 tcaccggcat ggtcgaccgg cttgcccggc tgacctcgcg gctgaaggac ttttcccaca
     2101 agagcgagct gccggcacag gcggtgccgc tgctgcgcag catcagcgac gcgcaggcgc
     2161 tgctcgatgc cgattcgaag gcgcacggca tctgcgtcga gatcgaggtg cggccccccg
     2221 acttggcggt catggctgac gacgcgacca tcaacagcgt cctggtcaat ctgatgcgca
     2281 acgccatcga tgccatgcag ggttcgccga agcgcgtgct tcgtgtgacg gcgcgaggcg
     2341 aaggcgatcg tgcgatcgtc gccgtgacgg acaccggccc tggcatccgc ccggacatcc
     2401 tcgcgcgcat gttcgagccc ttcgtcagca gcaagcccgc aggctccggg ctcggcctcg
     2461 ggctggtgat ttcagcgcag ctcgtgcgcg ccgtcggcgg cacgttgcgg gccagcaatc
     2521 gcgacgaggg cggcgcctcg ttcatcgtca acctgccgag cgccccgctc aagg
//
LOCUS       DASVHM010000902         1738 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_936869, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000902 DASVHM010000000
VERSION     DASVHM010000902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_936869"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..487
                     /locus_tag="VF308_16615"
     CDS             <1..487
                     /locus_tag="VF308_16615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019574912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7438327.1"
                     /translation="GRFPIEFVGIGKYRLFIIVVCGVLTIALQWALSRTRFGSRLRAS
                     VDDPRVAGGLGLNVNRIFLVTFAVGSGLAGLGGALGAEVLGLDPTFPLKFMIYFLIVV
                     SVGGTTTITGPLLAALLLGIADVAGKYYVPKLGAFIVYSLMIVILMLRPQGLFARGGG
                     R"
     gene            484..1494
                     /locus_tag="VF308_16620"
     CDS             484..1494
                     /locus_tag="VF308_16620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011802107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7438328.1"
                     /translation="MSAAPLPGPSAAGAGIAASLRADARWRWWEIALFAALALSWWLL
                     PSHALLLNEIAILALFAVSLDLILGYAGIVSLGHAAFFGFGAYGAALFAKLAMPDPLV
                     GMAFAVLISAALGAVTSLLILRGTDLTRLMVTLGVASILYELANKFEDLTGGADGLQG
                     VVMAPLLGRFEFDISGRIAYGYTLVVLVVCVLIARRLVHSAFGVSLQALRDNRLRATS
                     IGLSVNARLVAIYTIAAAMAGAAGALLAQTTGFASLDVFDFHRSAEVLLVLVIGGTGY
                     LYGGIFGAVVFKLLHDLISAWTPQYWNFWLGLFLVVLVLVGRERLIRPARWWPRAPKA
                     LE"
     gene            1491..>1738
                     /locus_tag="VF308_16625"
     CDS             1491..>1738
                     /locus_tag="VF308_16625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX7438329.1"
                     /translation="MSTVLETRSLVKCFGGITATNDVSLKVEKGARHALIGPNGAGKT
                     TLINLLTGVLEPTSGTIWLDGHDITQIAPHQRVRRGIVR"
BASE COUNT          208 a          619 c          580 g          331 t
ORIGIN      
        1 ggggcgcttt ccgatcgaat tcgtcggcat cggcaaatac cggctcttca tcatcgtcgt
       61 ctgcggggtg ctgacgatcg ctctgcagtg ggcgctctcg cgcacccgat tcggcagccg
      121 cctgcgggcc tcggtcgacg atccgcgggt ggccggcggt ctcggcctca atgtcaaccg
      181 catcttcctc gtcaccttcg cggtcggctc gggcctggcc gggctgggcg gcgcgctcgg
      241 cgccgaggtg ctcggactcg acccgacgtt tccgctcaag ttcatgatct atttcctgat
      301 cgtggtctcg gtcggcggta cgaccacgat caccgggccg ctgctcgccg ccctgctgct
      361 cggcatcgcc gacgtcgccg gcaagtacta cgtgcccaag ctcggcgcct tcatcgtcta
      421 cagcctgatg atcgtgatcc tgatgctgcg gccgcagggc ctctttgcgc ggggtggcgg
      481 tcgatgagcg ccgcgccgct cccgggcccg agcgcggccg gcgccggcat cgccgcgagc
      541 ctgcgcgccg acgcgcgctg gcgctggtgg gagatcgcgc tcttcgccgc gctcgcgctg
      601 tcgtggtggc tgctgccgtc gcacgcgctc ctcctcaacg agatcgcgat cctcgcgctc
      661 ttcgcggtgt cgctcgacct gatcctcggc tacgccggca tcgtctcgct cggccatgcg
      721 gcgttcttcg gtttcggggc ctacggcgcc gcgctgttcg cgaagctcgc gatgcccgac
      781 ccgctcgtcg gcatggcgtt tgccgtgctg atctcggccg cgctcggcgc ggtgacgagc
      841 ctgctgatcc tgcgcggcac cgacctgacg cgcctgatgg tcacgctcgg cgtcgcctcg
      901 atcctctacg aactcgccaa caagttcgaa gacctgaccg gcggcgccga cggcctgcag
      961 ggcgtcgtga tggcgccgct gctcgggcgc ttcgagttcg acatctccgg ccgcatcgcg
     1021 tatggataca cgctggtcgt gctcgtcgtc tgcgtcctga tcgcgcgccg cctcgtgcac
     1081 tcggcgttcg gcgtgtcgct gcaggcgctg cgcgacaacc gcttgcgcgc gacgagcatc
     1141 ggcctttccg tgaacgcgcg cctggtcgcg atctacacga tcgccgcggc gatggccggc
     1201 gccgcgggcg cgctgctcgc gcagacgacc ggcttcgcct cgctcgacgt gttcgacttc
     1261 caccgcagcg ccgaagtgct gctcgtcctg gtgatcggcg gcaccggcta tctgtatggc
     1321 ggcatcttcg gcgccgtcgt gttcaagctt ctgcacgacc tgatctcggc gtggacgccg
     1381 cagtactgga atttctggct cggcctcttt ctggtggtac tcgttctggt cggtcgcgag
     1441 cgcctgatcc gtccggcacg ctggtggccg agggctccga aggcactcga atgagcaccg
     1501 tcctcgagac ccgctcgctg gtgaagtgct tcggcggcat caccgcgacc aacgacgtct
     1561 cgctcaaggt cgagaagggt gcgcggcatg cgctgatcgg cccgaacggg gccggcaaga
     1621 cgacgctgat caacctgctg acgggcgtgc tcgaacccac ttcaggaacg atctggctcg
     1681 acgggcacga catcacgcag atcgccccgc accagcgcgt gcggcgcggc atcgtgcg
//
LOCUS       DASVHM010000903         6566 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1080436, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000903 DASVHM010000000
VERSION     DASVHM010000903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6566
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1080436"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..990
                     /locus_tag="VF308_16630"
     CDS             <1..990
                     /locus_tag="VF308_16630"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEX7438330.1"
                     /translation="PPQYDAKEFAERRFPVLFDLVGFMGSGASHTNWKGFGENVPERA
                     ARLIHQKKMEPAIIVFPDCFTALGGNQYINSSAVGRYADYLTQELVPFVDSQFRTLAS
                     REHRGCFGKSSGGYGAIVHGMLYPKVWGAVADHSGDAYFDFVYGADWPNTLDALAKYA
                     SPKRKEGPIDVAALAAASKGLAEGLDDGRVARFIADLRRKRKLDKDDGHTVMNLCMAA
                     TYDPDPKAPNGFRLPFHLETGERIESRWKRWLAHDPIHMVKRHAKALKSLRGIYVDCG
                     WADQYRIHYGARLLSLRLAELGVEHTYEEFDDNHSDIDYRMDTSLPFLVRALS"
     gene            complement(1000..2157)
                     /locus_tag="VF308_16635"
     CDS             complement(1000..2157)
                     /locus_tag="VF308_16635"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX7438331.1"
                     /translation="MSMKRRHFLHTAAALGAPALGAMPRSASAADATSAAPKDKLRIL
                     ILGGTGFTGPHQVRYALERGHHVTLFNRGRRPQPWPGNVVELTGDRNTGDLKSLVIGE
                     WDVCIDNPTTLPFWVRDAGRVLQGRVRQFVFISTVSVYAANDKVDQDESAATAAYMGA
                     DAMAETQDTLKANMALYGPLKAASEAEARRWFGAATTVIRPGLIVGPGDETDRFTYWP
                     VRLARGGEVLAPGDGSDSVQFVDARDLAEWTIRMAESRTTGTFNATGPAARLTTREML
                     AGIGAAVRSDAQLTWVPTAFLEKENVQAWTDLPVWVPGEGDSIGFARRDIGRALRAGL
                     TFRPLATTAADTLVWFRDQPAARQAKPRSGLTPEREAEVLAHWKASTSGKR"
     gene            2280..3017
                     /locus_tag="VF308_16640"
     CDS             2280..3017
                     /locus_tag="VF308_16640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011301531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX7438332.1"
                     /translation="MSLIDVDRRDLLIAGSALVLAAALQPLGVRAQSASGKLRIGTIG
                     AGRIGGTVAGLWVKAGHPVMFSAKSADEAKEVAAKLGPPARAGTVAEAIAFGEVIFLA
                     VPYGAMAEIGRDYGEALKGKIVLDCGNAVAGRDGAIADVADRDGIGLTSQKFLPGARL
                     VRVFNTIGYTIIASEAGRPDPKLPIPIAGDDAEAVKVAADLVQEAGFEPVVAGGLAEA
                     RRFQRGAPGYGPSANAAELRQKLRAAP"
     gene            3074..4327
                     /locus_tag="VF308_16645"
     CDS             3074..4327
                     /locus_tag="VF308_16645"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX7438333.1"
                     /translation="MPATPAERRAALLSFAYFFALLAAYYVLRPLRDQSAIAGGIKAL
                     PWLFTATFASLLVAQPLYSALVARLPRRRFIVVVYHFFAINLALFWLLLVLGIEPVAV
                     ARVFFVWVSVFNLFAVAVFWSFMADLFDSEQGKRLFGFIGAGGTAGALLGPVLTIALS
                     GPLGPSNLLLVALVLLEVAVLCVHRLEGTTTAAEGPRRDERPVGGGAFAALAEIARSP
                     YLLGIAAWVSLLSFGATVLYFAQAHIVAAEVQGAAAQTRVFAGIDLAVGLLSLATQLF
                     ATGRVLDRFGVGVAAGALPAAYLVGFAVLGFSPTLAVVVVFQVAQRWMNFAIANPARQ
                     VFFTVVGRAEKYKAKSFIDVVVLRGSDALYGWLFESLQAIGLKLGVVALCALPVAAGW
                     LALSTALGRGQERRAEAQSRDNRGA"
     gene            4324..4836
                     /locus_tag="VF308_16650"
     CDS             4324..4836
                     /locus_tag="VF308_16650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX7438334.1"
                     /translation="MTSTDRAAELIDQLGLQPHPEGGHFREVFRSAGTVQPDDARTPR
                     SALTTIDFLLARGECSAWHRVRSDEVWHVLEGGPLRLWLMSPALDAVEAVTLGRVDGR
                     GATPRHSVPADWWQAAEPLGDYAYVGATVGPGFDFADFAFLRDDAAASARLAALRADL
                     CRLLQPAGSP"
     gene            complement(4887..5450)
                     /locus_tag="VF308_16655"
     CDS             complement(4887..5450)
                     /locus_tag="VF308_16655"
                     /inference="COORDINATES: protein motif:HMM:NF042779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HEX7438335.1"
                     /translation="MSAAQARAAILVEGWSDQAALEALARRRGRDLLAEGIVVVPIGG
                     ATNVQRFVQALGPHGLDVRLAGLCDIAELRHVRCGLESAGLTTAAGIEDHGFYACDAD
                     LEDELIRALGTAAVERVLDAEGELVSFRRFQDQPAQRGRDLHPQLHRFLGTRAGRKVR
                     YGALLVDALELDRVPHALELALAHVRC"
     gene            5938..6459
                     /locus_tag="VF308_16660"
     CDS             5938..6459
                     /locus_tag="VF308_16660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438336.1"
                     /translation="MQRTSSASGRISSLAAAAAVAAAGAFLASSPAQAAEGYKFTCQG
                     VGMSTVEPVGDRDGHAVSVGEYSCRAESGRAEGGIVSGANTWERDKGVATLLAGDGVI
                     RKPGSIAVYQFTEGKNAFTMADGKVTGYEGEGKFLFKQASGVMAPWAGKVGTLKWHSI
                     PGGMFTGEVIIDN"
BASE COUNT          952 a         2311 c         2248 g         1055 t
ORIGIN      
        1 ccgccgcagt acgacgcgaa ggagttcgcc gagcgccgct tcccggtcct cttcgatctg
       61 gtcgggttca tgggcagcgg cgcgagccac accaactgga agggcttcgg cgagaacgtg
      121 cccgagcggg cggcgcgtct catccaccaa aagaagatgg agccggcgat catcgtcttc
      181 cccgactgct tcaccgctct cggcggcaac cagtacatca actcctccgc tgtcggccgc
      241 tacgccgact atctgacgca ggagctcgtt cccttcgtcg actcacagtt ccgcacgctc
      301 gcctcgcgcg agcaccgcgg ctgcttcggc aagagctcgg gcggctacgg cgccatcgtc
      361 cacggcatgc tgtatccgaa ggtgtggggt gcggtcgccg atcactcggg cgacgcatac
      421 ttcgattttg tctacggcgc cgactggccg aacacgctcg acgcgctcgc caagtacgca
      481 tcgcccaagc gcaaggaagg accgatcgac gtggccgcgc tcgcggcggc atcgaagggc
      541 ctcgccgagg gactcgacga cggccgcgtc gcccgcttca tcgccgacct gcgcaggaag
      601 aggaagctcg acaaggacga cgggcacacg gtgatgaacc tgtgcatggc cgcgacctac
      661 gaccccgacc ccaaagcgcc gaacggcttt cgcctgccgt tccacctcga gaccggcgag
      721 cggatcgagt cgcgctggaa gcgctggctc gcgcacgatc cgatccacat ggtcaagcgc
      781 catgccaagg cgctgaagag cctgcgcggg atttacgtcg attgcggctg ggccgaccag
      841 taccgcatcc actatggcgc gcgcctcctc tcacttcgcc tcgccgagct cggcgtcgag
      901 cacacctacg aggagttcga cgacaaccac tccgacatcg actaccgcat ggacacgagc
      961 ctgccgttcc tcgtgcgagc gctgagctga tcgagctgat cagcgctttc cgctcgtgct
     1021 cgctttccag tgcgcgagca cttcggcctc gcgctccggc gtcagaccgc tgcgcggctt
     1081 ggcctggcgc gcggccggct gatcgcggaa ccacaccagc gtgtcggctg cggtcgtcgc
     1141 gagcggacgg aaggtgaggc cggcgcgcag ggcgcggccg atgtcgcggc gcgcgaagcc
     1201 gatgctgtcg ccttcgccgg gtacccacac cggcaagtcc gtccacgcct gcacgttctc
     1261 cttctcgagg aatgctgtcg gcacccatgt gagctgagcg tccgagcgca ccgcggcgcc
     1321 gatgccggcg agcatctcgc gcgtcgtgag ccgggccgcg ggaccggtgg cgttgaacgt
     1381 gccggtcgtt cgcgactcgg ccattcggat cgtccattcg gcgagatcgc gcgcgtcgac
     1441 gaactgcacg gaatcggagc cgtcgcccgg cgcgaggacc tcgccgccgc gcgcgagccg
     1501 caccggccag tatgtgaagc gatcggtctc gtcgcccggg ccgacgatga gcccgggccg
     1561 aatgacggtg gtggccgcgc cgaaccagcg tcgcgcctcg gcctcgctag cggccttgag
     1621 cggtccgtag agcgccatgt tggccttcag cgtgtcctgc gtctcggcca tcgcgtcggc
     1681 gcccatgtag gcggccgtcg cggccgattc gtcctggtcc accttgtcgt tggcggcata
     1741 gaccgagacc gtcgagatga agacgaactg gcgcacgcga ccctgcagta cgcgtcccgc
     1801 gtcgcgcacc cagaacggca gcgtcgtcgg gttgtcgatg cacacgtccc actcgccgat
     1861 cacgagcgat ttcaggtcgc cggtgttgcg atcgccggtg agctcgacga cgttgccggg
     1921 ccacggctgt ggccgacggc cgcggttgaa gagggtgacg tgatggccgc gctcgagcgc
     1981 atagcgcacc tggtgcggac cggtgaagcc ggtgccgccg aggatgagaa tgcggagctt
     2041 gtccttcggc gctgcgctcg tcgcatcggc tgccgacgcg ctgcgcggca tcgcgccgag
     2101 cgcgggagcg ccgagggcgg cggccgtatg gaggaaatgg cgacgcttca tgctcatcgg
     2161 tggctccggg gcagcgacgc tggcgatggt aggcccggcg accctcccga ttgcgcgcct
     2221 tggacggtcg cacgatgatg gcgttggcgc tcatcccgtc gagcccctgg agattcgcaa
     2281 tgtcccttat cgatgtcgac cgccgtgacc tgctgattgc cggcagcgcg ctcgtcctcg
     2341 ccgcagcgct gcaacctctg ggcgtgcgtg cgcagtcggc gagcggcaag ctgcgcatcg
     2401 gcaccattgg cgcgggccgg atcggcggca cggtcgccgg gctctgggtc aaggccggcc
     2461 acccggtgat gttctcggcc aagagcgccg acgaagccaa ggaggtcgcc gcgaagctcg
     2521 gcccgcccgc gcgcgccggc accgtggccg aggcgatcgc cttcggcgaa gtgatcttcc
     2581 tcgccgtgcc ctacggcgcg atggccgaga tcggtcgcga ctacggcgag gcgctcaagg
     2641 gcaagatcgt gctcgattgc ggcaacgccg tagccggtcg cgacggcgcg atcgccgacg
     2701 tcgccgatcg cgacggcatc ggcctcacat cgcagaagtt cctgcccggc gcgcgcctcg
     2761 tgcgtgtctt caacaccatc ggctacacga tcatcgccag cgaagccggt cgtcccgacc
     2821 cgaagttgcc gatcccgatc gccggcgacg acgccgaggc ggtgaaggtc gccgccgatc
     2881 tcgtccaaga ggccggcttc gagccggtcg tcgccggcgg cctcgccgaa gcgcgccgct
     2941 tccagcgcgg cgcgccgggc tatggcccga gcgcgaacgc ggccgagctg cgccagaagc
     3001 tgcgcgccgc gccgtgacgg gcgcgccagg ccgctggcgc ggcctgatgc cgccaggccg
     3061 ctggcgcggt ctgatgccgg cgacgcccgc cgagcgacgc gcggcgctct tgtcgtttgc
     3121 gtacttcttc gcgctcctcg ccgcctacta cgtgcttcgc ccgctgcgcg accagagcgc
     3181 gatcgccggc ggcatcaagg cgttgccgtg gctcttcacc gcgaccttcg cgagccttct
     3241 cgtcgcgcag ccgctctaca gcgcgctcgt ggcgcggctt ccgcggcgtc gattcatcgt
     3301 cgtcgtctat cacttcttcg cgatcaacct cgcgctcttc tggctgctgc tggtgctcgg
     3361 catcgagccg gtcgcggtcg cgcgcgtctt tttcgtgtgg gtgagcgtgt tcaacctgtt
     3421 cgcggtggcc gtgttctggt cgttcatggc cgatctcttc gacagcgagc agggcaagcg
     3481 cctgttcggc ttcatcggcg ccggcggcac cgcgggcgcg ctgctcgggc cggtgcttac
     3541 gatcgcgctc tcgggcccgc tcgggccgtc gaacctgttg cttgtcgccc tcgtgctgct
     3601 cgaggtcgcg gtgctctgcg tccatcggct cgaaggcacg acgacggccg ccgaagggcc
     3661 gcggcgcgac gagcgtccgg tcggcggcgg cgctttcgcg gcgctcgcgg agatcgcgcg
     3721 ctcgccctac ctgctcggca tcgcggcgtg ggtgagcctg ctctcgttcg gcgccacggt
     3781 gctctatttc gcgcaggcgc acatcgtcgc cgccgaggtg cagggcgcgg cggcgcagac
     3841 gcgcgtgttc gcgggcatcg acctcgcggt cggtctgctg agcctcgcga cgcagctgtt
     3901 cgccacaggt cgcgtgctcg atcgcttcgg cgtcggcgtc gccgccggcg cgctgccggc
     3961 cgcctacctc gtcggcttcg cggtgctggg cttcagcccg acgctcgcgg tcgtcgtcgt
     4021 gttccaggtc gcgcagcgct ggatgaactt cgcgatcgcc aacccggcgc gccaggtgtt
     4081 cttcaccgtc gtcggccgcg cggaaaagta caaggccaag agcttcatcg acgtcgtcgt
     4141 cttgcgcggc tccgatgcgc tctatggctg gctcttcgag agcctccagg cgatcggcct
     4201 caagctcggc gtcgtcgcgc tctgcgcgtt gcctgtcgcg gctggatggc tggccttgtc
     4261 gacggcgctc ggtcggggcc aggagcgacg cgccgaagcg cagtcccgcg acaatcgcgg
     4321 cgcatgacct ccaccgatcg cgccgccgag ctgatcgacc agctcggtct ccagccgcat
     4381 cccgaaggcg gccacttccg cgaggtgttc cgctcggccg gcacggtgca gcccgacgac
     4441 gcgcgaacgc cgcgcagcgc gctcaccacc atcgacttcc tgctcgcgcg tggcgagtgc
     4501 tcggcctggc atcgcgtgcg ttccgacgag gtgtggcatg tcctcgaagg cgggccgctg
     4561 cgcctgtggc tgatgtcgcc cgcgctcgac gcggtcgagg ccgtgacgct gggccgtgtc
     4621 gacggccgcg gcgcgacgcc gcgccacagc gtgcccgccg actggtggca ggcggccgag
     4681 ccactcggcg actacgcgta cgtcggcgcg accgtcggcc cgggcttcga cttcgccgac
     4741 ttcgccttcc tgcgcgacga cgcggccgcg agcgcgcgtc tcgcggcgct gcgcgccgac
     4801 ctctgccggc tgctgcaacc tgcgggctcg ccctgatcgg catcgcgccg cgcgagcggg
     4861 cacgtcggtg aatccaggcg aatccctcag cagcgcacgt gggccagcgc gagctcgagc
     4921 gcgtgcggca cgcggtcgag ttcgagcgca tccacgagca acgcgccgta acgcaccttg
     4981 cgtccggcgc gggtccccag gaaccggtgc agttggggat gcaggtcgcg gccgcgctgc
     5041 gcaggttggt cctggaagcg acggaaggac acgagctcac cctcggcatc cagcacacgc
     5101 tctaccgccg ccgtgccgag ggctcggatc agctcatcct ccagatcggc atcgcacgca
     5161 tagaacccgt ggtcctcgat gcctgcggcc gtggtcaagc cggcactctc gaggccgcac
     5221 cgcacatgcc gcagctcggc gatgtcgcac agcccggcca gccgcacatc caggccgtgc
     5281 ggacccagcg cctgcacgaa gcgctgcacg tttgtggccc cgccgatcgg cacgacgacg
     5341 atgccttcgg ccagcaagtc gcggccgcgc cgccgcgcca gcgcctcgag cgccgcctgg
     5401 tcgctccagc cctcgaccag gatcgccgca cgcgcctgcg cagcgctcac caggcgacgc
     5461 gcggcgtcgg ggtcgagcgg cgggcgcggg cccggcgtac gcggcgtcgt tgcaggaggt
     5521 tccacgttcg catcatgccg tcatgccgcg cggtcagcag gccgcgcgcc gggacacagc
     5581 ttctctaagc ccggtaaagg cgaaagcgtg ttgtccgctg acgacccgaa gcagaaactc
     5641 atcctgccgc acggaaccat gcggagcaga tacaaaggcg aaagctcagg ttctaaacaa
     5701 tcgctccgcc attgggggtg agcaggttga ctttccctac cgacctgagt ctcgccgcca
     5761 gctcgtcaag cattgggggg cggcctttcc ctgaccccgc agcaaaagaa ccgctttgca
     5821 ttcgcatagg acgcgcgcat gattctgcga gtgtccgtga gccgttgcag tccccacatg
     5881 aagttgcgtc ggccttgctg cgcgttcact gccacccaac cacaaggaga catggacatg
     5941 caacgcactt cgagcgcctc cgggcgcatc tcgagcttgg ccgcggctgc agctgtggcg
     6001 gctgccggcg catttctggc gagctcacca gcccaagcgg ccgagggcta caagttcacc
     6061 tgtcagggtg tcggcatgtc cacggtggag ccagtaggcg accgggatgg gcacgccgtt
     6121 tcagtcggtg agtacagctg ccgggccgag agtggccggg ccgaaggggg catcgtttcg
     6181 ggagccaaca cttgggagcg cgacaagggc gtggcgacct tgctggccgg cgatggcgtc
     6241 atccgcaagc ccggcagcat tgctgtctac cagttcaccg agggaaagaa cgcgttcacg
     6301 atggccgacg gaaaggtgac ggggtacgag ggtgaaggga agttcctctt taagcaggcg
     6361 tccggcgtaa tggcgccatg ggccgggaaa gtcggcacac tcaaatggca ctccatcccc
     6421 ggtggcatgt ttaccggtga agtgatcatc gacaactagc ggcgagccgc tgcaggacag
     6481 ctaactaccc gcatgcacat tggccccacg cacaaatggc gtccgaaccg gtcagtgagg
     6541 agtacccgct catggccggg tcccgg
//
LOCUS       DASVHM010000904         2394 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_212346, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000904 DASVHM010000000
VERSION     DASVHM010000904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2394
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212346"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2394)
                     /locus_tag="VF308_16665"
     CDS             complement(<1..>2394)
                     /locus_tag="VF308_16665"
                     /inference="COORDINATES: protein motif:HMM:NF013767.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HEX7438337.1"
                     /translation="GDSLRRLFPLGETFATELLHAAGQTQNSNAAPPAPLAMEVATSL
                     LYIEAALEDADFDDPEHAGRVRRLAERLALVRQNHPPEPLEGWMEELYRRVSDRQTMG
                     SVVQELRASLSEAEKLIDQFFRNPADHTVLLPVPQQFSAMRGVLSVLGMEQASAALLG
                     MRDEVAALASTAVDPARGVHAGVFERLAGNLSALGFLIDMLSVQPQMAKSLFVYDAAA
                     GILSPVMGRAVDSEHMALGLPVLAPAIEPRLIEQAQLLAFSSVREDVPLQDVTRDLER
                     LSHEAQAADHPILAAAVLKAQEAFERAEGAADFAAARGELSEALVDFVSTASEPAALE
                     PLPSVAPRQTVGPTVEISDFQEDDEMRGVFLEEAREVLRDAAAACKGLARAPADLALL
                     TTLRRAFHTLKGSSRMVGLKDFGEAAWTCEQLYNSHLAEQRAADPGLVEFTGWSLGYL
                     GAWTEEIAAHQPVGHDVATVKSKAEQMSRQMQAAGSEASDIALPLGLPADLPSAADLD
                     LGFASFPLAAMPAGPAAASVPPAWAEAPDSDGLAFELDLSALDAPTAAPGLAYTPAQP
                     HLDPNVQALFDPFETLAMGAPSARPTVDVEVDDIVSGPVDLDLGDEPAADLFIRSLEP
                     SRFADVGVDIDTGPASLRDEAPAEPFVDLSGAALEPVAAPLAAPMPAERSDDELVKVV
                     GPLRIGIPLFNIYLNEADELSRRLTTEVAEWAMELHRPIGETAIALAHSLAGSSATVG
                     FTDLSHLARTLEHAEMRSQAIGRGTPEEARLFVHSAEEIRRLLHQFAAGFLREPSAEL
                     "
BASE COUNT          379 a          806 c          853 g          356 t
ORIGIN      
        1 agttcagccg aaggctctct caggaaaccg gctgcgaact ggtgcagcaa acgccggatc
       61 tcttcggccg agtgcacgaa gaggcgcgct tcctcgggcg tgccgcgacc gatcgcctgc
      121 gaccgcatct cggcgtgctc aagcgtacgg gccagatggg aaaggtcggt gaagcccacc
      181 gtcgccgagc tgccggcgag cgaatgcgcc agcgcgatag cggtttcgcc gatcggccgg
      241 tgcagttcca tcgcccattc ggccacctcg gtggtcaggc gccgcgagag ctcatcggcc
      301 tcgttgaggt agatgttgaa aagcggaatg ccgatgcgca gcggccccac caccttgacg
      361 agttcgtcgt cgcttcgctc cgccggcatc ggcgcggcga gcggcgccgc cacgggctcg
      421 agcgcggcgc cggagaggtc gacgaacggc tcggctggcg cttcgtcgcg cagactcgcg
      481 gggccggtgt cgatgtcgac cccgacatcg gcgaagcggc tcggctccag gcttcggatg
      541 aagaggtcgg ccgccggttc gtcgcccagg tcgagatcga cggggccgct cacgatgtcg
      601 tcgacctcga cgtccacggt cgggcgtgcg gagggcgctc ccatcgccag ggtctcgaac
      661 ggatcgaaga gcgcctggac gttcggatcg agatgcggct gtgccggcgt gtacgccagt
      721 ccgggtgcgg ccgtgggtgc gtcgagcgcg gacagatcga gttcgaaagc aaggccatcg
      781 ctgtcaggcg cctcggccca cgccggcggc acggaggcag cggctggtcc ggccggcatc
      841 gccgcaagcg ggaaagatgc gaatccgagg tcgaggtcgg cggcgctcgg caggtcggcc
      901 ggcaagccga gcggcaacgc gatgtcggaa gcctcgctgc ctgcggcctg catctggcgc
      961 gacatttgtt cggccttcga cttcacggtg gcaacgtcgt ggccgaccgg ctggtgcgcg
     1021 gcgatctcct cggtccaggc accgaggtag ccgaggctcc agcccgtgaa ttcgaccagt
     1081 ccgggatcgg ccgcacgctg ctcggccagg tggctgttgt agagctgctc gcaagtccag
     1141 gcggcctcgc cgaagtcctt cagcccgacc atgcgcgaac tgcccttcag cgtgtgaaag
     1201 gcgcggcgca aggtcgtgag gagggccaga tcggcgggcg cgcgcgccag ccccttgcac
     1261 gcggccgcgg catcgcgcaa cacctcgcga gcttcctcga ggaagacccc gcgcatttca
     1321 tcgtcttcct ggaaatcgct gatctcgacc gtcggcccca ccgtctggcg cggcgcgacc
     1381 gacggcaagg gctcgagcgc cgcgggctcc gacgccgtgg acacgaaatc gaccagcgct
     1441 tcggaaagtt cgccgcgcgc agcggcgaag tctgccgcgc cctcggcgcg ctcgaacgcc
     1501 tcctgggctt tcagaacggc cgcggccaga atcggatggt cggccgcctg ggcttcatgc
     1561 gacaggcgtt cgaggtcacg ggtgacgtcc tgcaggggca cgtcttcgcg caccgagctg
     1621 aaggcgagca gttgcgcctg ttcgatcagg cgcggctcga ttgcgggcgc gagcaccggc
     1681 aggccgagcg ccatgtgttc gctgtcgacc gcgcgtccca tcacagggct caagataccg
     1741 gccgcggcgt cgtagacgaa cagcgacttg gccatctgcg gctggacgct gagcatgtcg
     1801 atcaggaaac cgagcgcgct gaggttgccg gcgaggcgtt cgaacacgcc ggcatggacg
     1861 ccgcgcgccg gatcgaccgc ggtcgacgcg agtgccgcga cctcgtcgcg catgcccagc
     1921 agagccgcgg acgcctgctc catgccgagc accgacagca ccccgcgcat cgccgaaaac
     1981 tgctgcggga ccgggagcag caccgtgtga tcggccggat tgcggaagaa ctgatcgatc
     2041 agcttctcgg cctcggacag cgatgcgcgt agctcctgga ccacgctgcc catcgtctgg
     2101 cgatccgaga cgcgccgata cagctcctcc atccagcctt cgagcggctc gggcgggtgg
     2161 ttctggcgta ccagcgcgag gcgttcggca agacggcgca cccggcccgc atgttcgggg
     2221 tcgtcgaagt cggcatcctc gagcgccgcc tcgatgtaga gcaggctggt cgcgacttcc
     2281 atcgcgagcg gcgcgggcgg cgcagcgttc gagttctggg tctgcccggc cgcatgaagc
     2341 agctcggtcg cgaaggtctc gccgagcgga aacaagcgac gcagcgaatc gccg
//
LOCUS       DASVHM010000905         2004 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_937045, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000905 DASVHM010000000
VERSION     DASVHM010000905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_937045"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..514)
                     /locus_tag="VF308_16670"
     CDS             complement(<1..514)
                     /locus_tag="VF308_16670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX7438338.1"
                     /translation="MTDASSDTFTAKTDHRASLNLPDTPFPMRGDLPKREPGWVREWS
                     EKGVYRQLRAARCGQPRFVLHDGPPYANGTLHVGHAANKILKDMIVKARQMAGFDSLY
                     VPGWDCHGLPIENQIEKTFGRGLSRADVQARSRAYATEQIGQQMADFKRVGVLGDWEH
                     PYLTMDFGNEA"
     gene            complement(644..1678)
                     /locus_tag="VF308_16675"
     CDS             complement(644..1678)
                     /locus_tag="VF308_16675"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010463448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEX7438339.1"
                     /translation="MQVFRGFHHPGIAPACALTIGNFDGVHRGHQAMLALLVSEAAHR
                     GLPSCAMTFEPSPRDYFANLAGKPESAPARIATLRDKLSELERCGIDQTVVLRFDAPF
                     AAQSPQAFIRDVLVQGLGTRYVLVGDDFRFGARRAGNYEMLDAAGQTEGFDVARMNSY
                     EVHGSRVSSSAVRAALATGDMTRVAALLGRPYSISGHVIHGRKLGRSLGASGPGRDDG
                     LRTLNLRFPHPRPAAHGIYAVRTHGLVDVPVDGVASLGMRPTVDDSGRVLLEVYCLEW
                     PESLGLEEGYGKLLRVELLHKLRDEARYDGLEALTCAIRKDVEDARAVLRAHAASHVA
                     TGRQTTRDRI"
     gene            complement(1744..>2004)
                     /locus_tag="VF308_16680"
     CDS             complement(1744..>2004)
                     /locus_tag="VF308_16680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013802732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX7438340.1"
                     /translation="AGPILGLGAVAPASMGDRAAVATVSTTTTSESDAASDTAANPSG
                     TLRNSSRHLILQALEECQGNVSSAAQRLGVSRGLIYRHLKNG"
BASE COUNT          288 a          673 c          714 g          329 t
ORIGIN      
        1 ccgcctcgtt gccgaaatcc atcgtcaggt acggatgctc ccagtcaccg aggacgccga
       61 cgcgcttgaa gtcagccatc tgctggccga tctgctcggt cgcgtaggcg cggctcctgg
      121 cttgcacatc ggcgcggctc aggccgcgcc cgaaggtctt ctcgatctgg ttctcgatcg
      181 gcaggccatg gcagtcccag cccggcacgt agagtgagtc gaagccggcc atctggcgcg
      241 ccttgacgat catgtccttc aggatcttgt tcgcggcatg gccgacatgc agcgtgccgt
      301 tcgcatacgg cggcccgtcg tgcaggacga agcgcggctg gccgcagcgc gcggcgcgca
      361 actgcctgta gacgcccttc tcggaccatt cccggaccca gcccggttcg cgcttgggca
      421 gatcgccgcg catcgggaag ggcgtgtcgg gcaggttcag cgaggcgcga tggtcggtct
      481 tggcggtgaa ggtgtcggac gaggcgtctg tcatggcgtg cactggaagc cgtcattccc
      541 gcgcaggcgg gaatccatgg gcgcctgcgg ccgcatggtg cgtatgaagg tggatccccg
      601 ctttcgcggg gatgacccgc gggtcatctt cgccacctgc gggtcaaatt cggtcgcgcg
      661 tggtctggcg gccggtcgcg acgtgcgatg ccgcatgcgc gcgcaacacg gcacgggcat
      721 cctcgacatc cttgcggatg gcgcaggtca gggcctcgag cccgtcgtag cgggcttcgt
      781 cgcgaagttt gtgcagcagt tccacgcgca ggagtttacc gtagccctct tcgaggccga
      841 ggctctcggg ccactcgagg cagtacacct ccagcagcac ccggccactg tcgtcgacgg
      901 tgggccgcat gcccaggctg gcaacgccgt cgactggcac gtccacgagg ccgtgcgtgc
      961 gcaccgcgta gatgccgtgc gccgccggcc gcgggtgcgg gaagcgcagg ttcagggtgc
     1021 gcaggccgtc gtcgcggccc ggcccgctcg cgccgagcga tcggccgagc ttgcgcccat
     1081 ggatcacgtg gccgctgatg ctgtagggcc ggcccagcaa tgcggcgact cgcgtcatgt
     1141 cgcccgtggc cagtgcggcg cgcaccgccg aactggagac gcgcgagccg tggacctcgt
     1201 agctgttcat gcgggcgacg tcgaagcctt cggtctggcc cgcggcgtcg agcatctcgt
     1261 agttgccggc gcggcgcgcg ccgaagcgga agtcgtcccc gaccaggaca tagcgcgtgc
     1321 cgagtccttg gacgagcacg tcgcggatga aggcctgcgg cgattgcgcc gcgaacgggg
     1381 cgtcgaagcg cagcaccacg gtctggtcga tgccgcagcg ctcgagctcg ctcaacttgt
     1441 cgcgcagcgt cgcgatccgg gccggggccg attcgggctt gcccgcgagg ttcgcgaaat
     1501 agtcgcgtgg actcggctcg aaggtcatcg cgcacgacgg cagaccgcga tgcgccgctt
     1561 cggacacgag cagcgccagc atcgcctggt ggccgcgatg gacaccgtcg aagttgccga
     1621 tcgtcagggc gcatgcaggt gcgattccgg ggtggtggaa gccgcgaaac acctgcatgg
     1681 gcggcattat cgggccggtc tgcgtaccgg ctgcggaccc gcggcgccgc gaccgcgccc
     1741 gcttcagccg ttcttcaggt gacggtagat cagacctctc gagacgccga ggcgttgcgc
     1801 ggcgctcgac acattgccct ggcattcctc gagcgcctgc aggatcaggt gccggctcga
     1861 attgcgcaac gtaccgctgg ggttggcagc cgtgtcactc gcagcatcgg attcgctggt
     1921 cgtggtggtc gacaccgtcg ccacggcggc tcggtcgccc atcgaggccg gtgcgaccgc
     1981 gcccaaaccc aggatcggcc ccgc
//
LOCUS       DASVHM010000906         4106 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_500362, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000906 DASVHM010000000
VERSION     DASVHM010000906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 4106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4106
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_500362"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..695)
                     /locus_tag="VF308_16685"
     CDS             complement(<1..695)
                     /locus_tag="VF308_16685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009517949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEX7438341.1"
                     /translation="MRSIAGALALAASLAGAQQRPWAGIGRTATPAEVKAWDIDVRAD
                     FKGLPAGSGSVAQGQALWEEKCALCHGIFGESNDVFTPIIGGTTKQDIASGRVRSLTQ
                     PNQPHRTTMMRLSTLSSLWDYIHRAMPWKAPKSLSTNDVYALTAYILSLADVVPEDFT
                     LSDRNIAEVQKRLPNRNGKVFFPGLWDSAGRGDTANTPCMKNCPVEGRVTSAYPDSEL
                     SSHGNLAEQNRLVG"
     gene            complement(748..2079)
                     /gene="soxC"
                     /locus_tag="VF308_16690"
     CDS             complement(748..2079)
                     /gene="soxC"
                     /locus_tag="VF308_16690"
                     /EC_number="1.8.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012078311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite dehydrogenase"
                     /protein_id="HEX7438342.1"
                     /translation="MSTDPHQPIAGIVKAPEGHLDGVVAGLGRAARRGFLGRALALGA
                     GALAGQAARAEEGDPAILTLPEHSLGLGQPVAATGYGVPSKWEKNLQRRESPGLTRVG
                     QASVSFCPLQGLFGIITPSGLHFERHHQGWWDVDPAGHRLMVNGLVKAPRVFTMDDLM
                     RLPPVSRIHFIECGANTGIEWPSVALPTVQYTHGMLSCCEYTGVALATLLDLCGADTK
                     TGRYVLAEGADGSSMTRTISMKSALDDVIVAWGMNGEMLRPENGYPLRLVVPGVQGVS
                     WVKYLRRLEVGDQPYFTKDEELHYVDLMPDGLQRQYTSIQECKSVITTPSGGQQLQAK
                     GYCNVTGLAWSGRGRVKRVDVSFDAGRNWQTARLEGPVLPKAIARFNIDWVWDGLPAI
                     LQSRAIDETGYVQPKLGQLRAVRGSRSLYHNNAIQSWRVAETGAVANVQTA"
     gene            complement(2069..2458)
                     /locus_tag="VF308_16695"
     CDS             complement(2069..2458)
                     /locus_tag="VF308_16695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011870699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEX7438343.1"
                     /translation="MREVFESVARYFALLSDPMRLRIMHTVCQAERSVGRIVEETGAT
                     QSNVSRHLGMLHRAGVLARRRKGAQVFYRVTDPAFTEICRIVCVRVASELAGDKSLQR
                     GFNELIADLRQPVPAPVARVNPKSHVH"
     gene            2635..3555
                     /gene="rpoH"
                     /locus_tag="VF308_16700"
     CDS             2635..3555
                     /gene="rpoH"
                     /locus_tag="VF308_16700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HEX7438344.1"
                     /translation="MNKSAALTVRDPWALVPSLGNLDAYISAANRIPLLTQEEEVTFA
                     RRLRQQGDLDAAGKLVLSHLRLVVSISRKYLGYGLPHSDLIQEGNIGLMKAVKRFDPD
                     QGVRLVSYAMHWIKAEIHEYILKNWRMVKVATTKAQRKLFFNLRSMKQGMKEDAADHD
                     THRSTMTQGEVDTLARTLNVKREEVLEMETRLSGGDVALEPQTDDSEESYAPIAYLAD
                     EANEPTQVLEARSRDWLAGDGIALALETLDPRSRRIVEQRWLKVNDDSSGGMTLHDLA
                     AEYGVSAERIRQIEVSAMKKMRKTLAAENA"
     gene            complement(3566..>4106)
                     /locus_tag="VF308_16705"
     CDS             complement(3566..>4106)
                     /locus_tag="VF308_16705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEX7438345.1"
                     /translation="DGAPNSRPQFKAADVTGADFGRSLALPDQTGRMRTLEDFKGKVT
                     VIFFGYTQCPDVCPTTLAELAQAKKSLGALGDRVQGVFVTIDPERDTPEILKNYVASF
                     DPGFIALRGTPEQTAAAAKEFKVFYAKVPGKSPGSYTMDHTAASYVLDADGRLRLFVR
                     YGSGAAALAADLSALLKSG"
BASE COUNT          692 a         1378 c         1373 g          663 t
ORIGIN      
        1 ccgacaagcc ggttctgctc ggcgaggttg ccgtgactgg acagttcgga gtcggggtag
       61 gccgaggtga cccggccttc gaccgggcaa ttcttcatgc agggcgtatt cgcggtgtcg
      121 cccctgccgg cggagtccca cagccccgga aagaagacct tgccgttgcg gttgggcaga
      181 cgcttctgga cctcggcgat gttgcgatcg ctcagcgtga agtcttccgg gaccacatcg
      241 gcgagcgaca ggatataggc ggtgagcgcg tacacgtcgt tcgtcgacag tgacttcggc
      301 gccttccacg gcatcgcgcg gtggatgtag tcccacagcg acgacagcgt cgaaagccgc
      361 atcatcgtcg tgcggtgcgg ctggttcggc tgggtcaggc tgcgcacgcg cccggacgcg
      421 atgtcctgct tcgtcgtgcc gccgatgatg ggggtgaaca catcattcga ttcgccgaag
      481 atcccatggc acagggcgca cttttcctcc cacagcgcct ggccctgcgc gaccgatccg
      541 gagccggccg gcagaccctt gaaatcggcg cggacgtcga tgtcccaggc cttcacttcg
      601 gccggggtcg cggtccgccc gatgccggcc cagggcctct gctgggcccc ggcgaggctc
      661 gcggcgaggg ccagggcacc ggcgatgctg cgcaagcatc cccgggcatt gcgtcgggcg
      721 cctcgcgtcg cagattcgga ggtcgcgtca ggcggtctgg acattggcca ccgcaccggt
      781 ttcggcgacg cgccacgact ggatcgcgtt gttgtggtag agcgagcgcg acccgcgcac
      841 ggcgcgaagc tggccgagct tcggctgcac atagccagtc tcgtcgatcg cgcgcgattg
      901 caggatggcg ggcaggccat cccagaccca atcgatgttg aagcgcgcga tcgccttggg
      961 cagcaccggc ccctccagcc gcgccgtctg ccagttgcgc cccgcgtcga aactcacgtc
     1021 gacacgcttg acgcggccgc gcccggacca ggccagcccg gtgacgttgc aatagccctt
     1081 ggcctgcagc tgctggccgc ccgacggcgt cgtgatgacc gacttgcact cctggatcga
     1141 ggtgtactgg cgctgcaggc cgtcgggcat caggtcgaca tagtgcagtt cctcgtcctt
     1201 cgtgaagtat ggctggtcgc cgacctcgag gcgccgcagg tacttgaccc agctcacgcc
     1261 ctgcacaccg ggcacgacca ggcgcagcgg atacccgttc tccggccgca gcatctcgcc
     1321 gttcatgccc caggcgacga tcacgtcgtc gagcgcgctt ttcatcgaga tcgtccgcgt
     1381 catcgacgag ccgtcggcgc cttcggcgag gacgtagcgg ccggtcttgg tgtcggcgcc
     1441 gcacaggtcg agcagcgtcg ccaacgccac gccggtgtac tcgcagcacg acagcatgcc
     1501 gtgggtgtac tgcaccgtcg gcagggcgac gctcggccac tcgatgccgg tgttcgcccc
     1561 gcattcgatg aagtggatgc gcgagaccgg cggcaggcgc atgaggtcgt ccatcgtgaa
     1621 gacgcgcggc gccttcacga ggccgttgac catcaggcgg tgcccggcgg gatcgacgtc
     1681 ccaccagccc tggtgatggc gctcgaaatg caggccgctc ggcgtgatga tgccgaagag
     1741 tccctgcagg gggcagaacg acaccgacgc ctggccgacg cgcgtcaggc ccggactctc
     1801 gcgccgctgc aggttcttct cccacttcga gggcacgccg tagccggtcg ccgcgaccgg
     1861 ctgacccagg ccgagcgagt gttccggcag ggtcaggatc gccgggtcgc cctcttcggc
     1921 gcgggcagcc tggccggcca gggctccggc gccaagcgcc agagcgcgcc ccaggaaacc
     1981 gcggcgcgcc gcgcggccga gtcccgcgac caccccgtcg agatgccctt ccggcgcctt
     2041 gacgatgccg gcgatcggct ggtgcgggtc agtggacatg gctcttcggg ttgacgcgcg
     2101 ccaccggggc gggaaccggc tggcgcagat cggcgatgag ttcattgaac ccgcgctgga
     2161 gcgacttgtc gccggccaat tccgacgcga cgcggacgca cacgatccga cagatctcgg
     2221 tgaatgcggg gtccgtgacg cggtagaaga cctgcgcgcc cttgcggcgc cgcgccagca
     2281 ccccggcgcg atgcagcatg cccaggtgac gcgacacgtt gctctgggtc gcacccgtct
     2341 cttcgacaat gcggcccacg gatctttcgg cttggcagac ggtgtgcatg atgcgcagcc
     2401 gcatcggatc cgacagcagg gcgaaatagc gcgccacgga ctcgaaaacc tcgcgcatgg
     2461 actccatcgt cgactccgac tgcctgcctt ttctcagact atgcgtgaat gcgcatgcac
     2521 ggataggagc tttcccgagg cgggggtggc cttggcagag cccgtccggc actctcggcg
     2581 tccgagtgct aagatttggg gaacaaacag ggtttacccg aatcagatac cgacatgaac
     2641 aaatccgccg cactgaccgt ccgcgatccc tgggcgctgg ttccttcgct cggaaacctc
     2701 gacgcctaca tcagcgccgc aaaccggatc cccctgctga cgcaggagga agaggtgact
     2761 tttgcgcggc gcctgcgcca gcaaggcgat ctcgacgccg ccggaaagct cgtgctttcg
     2821 cacctgcgtc tggtcgtgtc gatctcgcgc aagtacctcg gctatggcct gccgcacagc
     2881 gacttgatcc aggagggcaa catcggcttg atgaaggcgg tgaagcgctt cgaccccgat
     2941 cagggcgttc gcctggtcag ctatgcgatg cactggatca aggccgagat ccacgagtac
     3001 atcctgaaga actggcgcat ggtcaaggtc gcgacgacca aggcccagcg caagctcttc
     3061 ttcaacctgc gctcgatgaa acagggcatg aaggaagacg cggccgacca cgacactcac
     3121 cgctcgacca tgacacaggg cgaagtcgac acgcttgcgc gaacgctgaa cgtgaagcgc
     3181 gaggaagtcc tcgagatgga aacgcgcctg tccggcggcg atgtcgccct cgagccgcag
     3241 accgacgaca gcgaggaaag ctatgcgccg atcgcctacc tcgccgacga ggcgaacgag
     3301 ccgacgcagg ttctcgaagc caggagccgc gactggctcg ccggcgacgg catcgcactc
     3361 gcattggaga cgctcgaccc gcgcagccgg cgcatcgtcg aacagcgctg gctgaaggtc
     3421 aatgacgaca gctcgggcgg gatgaccttg cacgacctag ccgccgaata cggcgtcagc
     3481 gcggagcgca tccgccagat cgaggtctcg gcgatgaaga agatgcgcaa gaccttggct
     3541 gccgagaacg cctgaggccg ccgcttcaac ccgacttgag caaggcgctc aagtcggcgg
     3601 cgagcgccgc tgcgccgctg ccgtagcgca cgaagagccg caacctgccg tccgcatcga
     3661 ggacgtacga ggcggccgtg tggtccatcg tgtagctgcc ggggctcttg cccggtacct
     3721 tggcgtagaa gaccttgaac tccttcgccg ccgccgcggt ctgctcgggc gtgccgcgca
     3781 atgcgatgaa tcctggatcg aagctcgcca cgtagttctt caggatttcg ggcgtatcgc
     3841 gctccggatc gatcgtcaca aacacgccct gcacgcggtc gcctagcgcg ccgagcgatt
     3901 tcttcgcctg ggccagttcc gcgagcgtcg tcgggcagac gtcggggcac tgggtgtagc
     3961 cgaagaaaat gacggtcacc ttgcccttga agtcctcgag cgtgcgcatc cgcccggtct
     4021 ggtcgggcaa ggcgaggctg cgcccgaagt cggcgccggt gacgtcggcc gccttgaatt
     4081 gcggcctcga attcggcgcg ccgtcg
//
LOCUS       DASVHM010000907         1606 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_66574, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000907 DASVHM010000000
VERSION     DASVHM010000907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66574"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..634
                     /locus_tag="VF308_16710"
     CDS             <1..634
                     /locus_tag="VF308_16710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019654449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX7438346.1"
                     /translation="VEAGVKTRTAGWGDLNVALFETRTHEEIVTQTNVGGRSTFQNAG
                     ATRRRGLEAAWSAELRENLRTQVAYTWLDARYLDGFTTCTATPCATPNVTIAGGNRIP
                     GIARSVLYGALAWAPPLGWRGGLEGRVLSRVWVNDANSDAASGYAIASANLGYVARIG
                     SWELAGFGRVDNLFGRHYAGSVIVNEGNSRFFEPAPARTWTVGLSATVGF"
     gene            647..1231
                     /locus_tag="VF308_16715"
     CDS             647..1231
                     /locus_tag="VF308_16715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014751263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HEX7438347.1"
                     /translation="MAALRYGRVSMLLHWLIGFALLGQIAFGLLLDEIAPRGTPARAG
                     VINLHKSFGIVLGLLIVARLVWRLLHRPPAWPESMPAWQRRAAQIGHRALYTCMVVMP
                     LSGTIASNFSKHGIKLFGTMLKPWGPDLPQVYALFNGLHVATAFVFCALIMGHVLVTL
                     KHALIDHDEVFARMWPGASGELATPPFPRSQASP"
     gene            1228..>1606
                     /locus_tag="VF308_16720"
     CDS             1228..>1606
                     /locus_tag="VF308_16720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009666278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HEX7438348.1"
                     /translation="MTFRFAALAIAWTLPSAAWAAPFAYVPNEGSGTLSVIDTASDQV
                     VAEIPAGQKPRGTVVSNDGKRAYVSDQPNNRLVMIDLAGRTLAGTIALGESPEGVGIS
                     PDGRWVAVAVEETNDVVFVDTATN"
BASE COUNT          232 a          576 c          532 g          266 t
ORIGIN      
        1 cgtcgaggcc ggggtcaaga cgcgcaccgc gggctggggg gacctcaacg tcgcgctgtt
       61 cgagacccgc acgcacgagg agatcgtcac ccagaccaat gtcggcggcc gttcgacgtt
      121 ccagaacgcc ggcgcgacgc ggcgtagagg cctcgaggcg gcgtggtcgg ccgagttgcg
      181 cgagaacctg cgcacgcaag tcgcctacac ctggctcgac gcgcgctacc tcgatggctt
      241 caccacctgc accgcgacgc cctgcgcgac gccgaacgtg acgattgcgg ggggcaaccg
      301 gatccccggc atcgcgcgct cggtcctcta cggtgcgctg gcctgggccc cgccgctggg
      361 ctggcgcggc ggcctcgaag gccgcgtgct gagccgcgtc tgggtcaacg acgccaacag
      421 cgacgccgca tccggatatg cgatcgcgag tgccaacctc ggctacgtcg cgcgcatcgg
      481 ttcctgggaa cttgccggct tcggccgcgt cgacaatttg ttcgggcgcc actatgcggg
      541 ctcggtgatc gtcaacgaag gcaactcgcg cttcttcgag ccggcgccgg cgcgcacctg
      601 gaccgtcggt ctctccgcca cggtcggctt ctgaggcacc cgccgcatgg cagcgctgcg
      661 ctacggccgg gtctcgatgc tgctgcactg gctcatcggc ttcgcgctgc tgggccagat
      721 cgccttcggc ttgctgctcg acgagatcgc gccgcgcggc acgcccgcgc gcgccggcgt
      781 gatcaacctg cacaagtcct tcggcatcgt gctcggcctc ttgatcgtcg cgcggctcgt
      841 ctggcgcctg ctgcatcggc cgccggcgtg gcccgagtcg atgccggcgt ggcagcgccg
      901 cgccgcgcag atcggtcatc gcgcgctcta tacctgcatg gtcgtgatgc cgctgtcggg
      961 caccatcgcg tcgaatttca gcaagcacgg catcaagctg ttcggcacga tgctcaagcc
     1021 ctgggggccc gatcttcccc aggtgtacgc gctgttcaac ggcctgcatg tcgcgaccgc
     1081 cttcgtgttc tgcgcgttga tcatgggcca cgtgctcgtg acgctgaaac atgcgttaat
     1141 cgaccacgac gaagttttcg cacggatgtg gcccggcgcg tccggcgagc tcgccacacc
     1201 gccctttcct cgctcacagg catcgccatg actttcagat ttgctgcgct cgccatcgca
     1261 tggacgctgc cgtcggccgc gtgggcggcg cccttcgcct atgtgccgaa cgagggctcc
     1321 gggaccctca gcgtcatcga caccgcgagc gaccaggtcg tggccgagat ccccgcgggc
     1381 cagaagccgc gcggtaccgt ggtcagcaac gacggcaagc gcgcctatgt gagcgaccag
     1441 ccgaacaacc gtctggtgat gatcgacctc gccgggcgca cgctcgccgg cacgatcgcc
     1501 ctcggcgaat cgcccgaggg cgtcggcatc tcgcccgacg gacgctgggt cgctgtggcg
     1561 gtcgaggaaa ccaacgacgt cgtcttcgtc gacaccgcga cgaacc
//
LOCUS       DASVHM010000908         3425 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_66768, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000908 DASVHM010000000
VERSION     DASVHM010000908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3425
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66768"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            206..1897
                     /locus_tag="VF308_16725"
     CDS             206..1897
                     /locus_tag="VF308_16725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011799700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX7438349.1"
                     /translation="MSTIPSDMLALQRLYHWEKTAPNRIALTQPMGGGVTRDFTWGEV
                     ADAVRRMAAHLKAQGWEPGSKVAILSKNCVWWLMSDLAIWMAGYVSVPLYPTLAHDTV
                     AQILTHSEARACFVGKLDGWEGMKPGVPAGLPCISYPLSPPDAIRSYEGWDAICARNK
                     PLEGEVIRGADELATLIYTSGTTGRPKGVMHSFGNFAWAVDKGIERVTMTAADRMLSY
                     LPLAHVVERVLVEHGWLRTGLHVFFADSLNTFTADVQRARPTIFFSVPRLWVKFQHGV
                     HHELAPAKLDRLLSIPIIGGLVRRKVLKALGLDRCRIAAGGAAPMPLELLAWYRRLGL
                     PVNEGYGMTENLALSHLTLPGQNQEGTVGPPYDGVEVRIDAETGEIQMRSGALMLGYY
                     KEPELTREAFSADGWLRTGDKGQIDAQGLLHITGRLKDLFKTSKGKYVAPAPIEDKLV
                     MHEAVDACVVTGANLGQPLGIAMLNAETVARLADPAATAELEASLGNHLEEINATLDP
                     HERLACLVVVTTAWTVENDIITPTFKVKRNRIEEIYAAQYARWESSGRKVIWQTA"
     gene            complement(1906..>3425)
                     /locus_tag="VF308_16730"
     CDS             complement(1906..>3425)
                     /locus_tag="VF308_16730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007829737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="malonyl-CoA synthase"
                     /protein_id="HEX7438350.1"
                     /translation="FVALQSAFPADLDSTAIETADGPALRYSWRDIDRATAMLANLLD
                     SLGLPPGARVAVQTEKSVEALLLYLAILRAGFVHLPLNSAYQSAELEYFIGDAEPSVV
                     VCTPQRFARVSQIAFKAGSAHVFTLGDDRSGSLLERAAHHSDRHMPAVCRADELAAIL
                     YTSGTTGRSKGAMLSHGNLLSNARTLQRYWGWQRGDVLIHALPIFHVHGLFVASHGAL
                     LNASRMIWFNRFDARGVVERLPDATVFMGVPTLYVRLLAEPGLTREACRHMRLFVSGS
                     APMLVETFDAFRERTGHTILERYGMSETVMLTSNPYFEAEGERRGGTVGFALPGVGVR
                     VVDVHGAPCAADAIGAIEVTGPNVFSGYWHMPDKTREEFTADSWFKTGDVGKLDANGR
                     LTIVGRSKDVVISGGFNVYPAEVESVLNEMPGVAESAVIGVPHHDFGEAVVAVVVGRP
                     GAEPDAAALIAGLKTRIANFKVPKQVFVVPELPRNTMGKVQKNLLREQHKDVFGS"
BASE COUNT          572 a         1145 c         1167 g          541 t
ORIGIN      
        1 acacgcgaca tgcgttcgga agtttcggtc atcgcgcact ccgggggaaa ttgtgagtgt
       61 cacccctcga tcggcgtttg acggccgacc cattgcaagg agcgttgacg tatctcaagg
      121 cagcatgccg aactcgacga gcagggccgt cgaaatccct atgctcgaca caccgtccct
      181 ttgttcgttt tcgggaatcc gatccatgag taccattccg tccgacatgc tggcgctgca
      241 gcgcctgtac cactgggaaa agaccgcgcc gaatcgcatc gcactgaccc agccgatggg
      301 cggcggcgtg acccgcgact tcacctgggg cgaggtggcc gacgcggtgc gccgcatggc
      361 cgctcacctg aaggcccagg gctgggaacc gggttcgaaa gtggccatcc tgtcgaagaa
      421 ttgcgtctgg tggttgatga gcgacctggc catctggatg gccggctacg tctcggtgcc
      481 gttgtacccc acgctggcgc acgacaccgt cgcgcagatc ctgacccaca gcgaagcgcg
      541 ggcctgcttc gtcggcaagc tcgacggctg ggaaggcatg aagccgggcg tgccggctgg
      601 cctgccgtgc atcagctacc cgctgtcgcc gccggacgcg atccgcagct acgaaggctg
      661 ggacgcgatc tgcgcccgca acaagccgct cgagggcgag gtgattcgcg gcgccgacga
      721 actcgccaca ctgatctaca cctcgggcac caccggccgg cccaagggcg tgatgcacag
      781 cttcggcaat ttcgcctggg ccgtggacaa aggcatcgag cgcgtcacga tgacggccgc
      841 ggaccgcatg ctgtcgtacc tgccgctggc ccacgtggtc gagcgcgtgc tggtcgaaca
      901 cggctggctg cgcaccggcc tgcacgtgtt cttcgccgat tcgctgaaca cgttcacggc
      961 cgacgtgcag cgtgcgcgcc cgacgatctt cttctcggtg ccgcggctgt gggtcaagtt
     1021 ccagcatggc gtgcaccacg agctggcgcc ggccaagctc gatcgcctgc tctcgatccc
     1081 gatcatcggc ggcctggtgc ggcgcaaggt gctgaaggcg ctgggtctgg atcggtgccg
     1141 catcgcggcc ggcggcgcgg cgccgatgcc gctcgaattg ctggcctggt accgcaggct
     1201 cggcctgccg gtcaacgaag gctacggcat gaccgaaaac ctggccctct cgcacctgac
     1261 gctgccgggc cagaaccagg aaggcacggt ggggccgccc tacgacggcg tggaggtgcg
     1321 catcgatgcc gagaccggcg aaatccagat gcgcagcggc gcgctgatgc tcggctacta
     1381 caaggagccc gagctgaccc gcgaggcctt cagcgccgat ggctggctgc gcaccggaga
     1441 caaggggcag atcgacgccc agggcctgct gcacatcacc ggccgcctga aagacctgtt
     1501 caagaccagc aagggcaagt acgtcgcgcc ggcgccgatc gaggacaagc tggtgatgca
     1561 cgaggcggtg gatgcctgcg tcgtcaccgg cgccaacctg ggccagccgc tgggcatcgc
     1621 gatgctcaac gccgagacgg tcgcgcgcct tgccgacccc gcggcaactg ccgagctcga
     1681 agcctccctc ggcaaccacc tggaggaaat caacgcgacg ctggacccgc acgagcgact
     1741 cgcctgtctc gtcgtggtga caacggcgtg gacggtggaa aacgacatca tcaccccgac
     1801 cttcaaggtc aagcgcaacc ggatcgagga aatctacgcg gcgcagtatg cacgctggga
     1861 gtcctcgggc cgcaaggtga tctggcagac tgcgtgacac cggggctagc tcccgaacac
     1921 gtccttgtgc tgctcgcgca gcaggttctt ctgcaccttg cccatcgtgt tgcgcggcag
     1981 ctcgggcacg acaaagacct gcttcgggac cttgaagttg gcgatccgcg tcttgagccc
     2041 cgcgatcagc gctgccgcgt caggttcggc gccgggccgc cccacgacga ccgcgaccac
     2101 cgcttcgccg aaatcgtgat gcggcacgcc gatcacggcg ctctcggcca cgcccggcat
     2161 ttcgttgagg acgctttcga cctcggccgg gtagacgttg aagccgccgc tgatgacgac
     2221 atccttgctg cggccgacga tcgtcaggcg cccgttcgca tcaagcttgc cgacgtcgcc
     2281 ggtcttgaac cagctatcgg cggtgaactc ctcgcgcgtc ttgtcgggca tgtgccaata
     2341 gccgctgaag acgttcggac cggtcacctc gatcgcgccg atggcgtcgg ccgcgcacgg
     2401 cgccccgtgg acgtcgacga cgcgcacgcc cactcccggc agcgcaaagc cgaccgtgcc
     2461 gccgcggcgc tcgccctcgg cttcgaagta cgggttcgaa gtcagcatca cggtctcgct
     2521 catgccgtag cgctcgagga tcgtgtggcc ggtgcgttcg cggaacgcgt cgaaggtctc
     2581 gaccagcatc ggcgccgagc cgctgacgaa gagacgcatg tggcggcacg cctcgcgcgt
     2641 caggccgggt tcggcgagga ggcgcacgta gagcgttggc acgcccatga acacggtcgc
     2701 gtcgggcagc cgttcgacca cgcctctcgc atcgaagcgg ttgaaccaga tcatcctgct
     2761 ggcgttgagc agcgcgccgt gcgaggcgac gaagaggccg tgcacatgaa agatcggcaa
     2821 ggcatggatc agcacgtcgc cgcgctgcca gccccaataa cgctgcaagg tgcgcgcgtt
     2881 gctgagcagg ttgccgtgcg agagcatcgc gcccttgctg cgtccggtgg tgccgctggt
     2941 gtagaggatc gcagcgagct cgtcggcgcg gcacacggcc ggcatgtgcc ggtcgctgtg
     3001 gtgcgcggcg cgctccagca ggctgccgct gcggtcgtcg ccgagcgtga agacgtgcgc
     3061 gctgccggcc ttgaaggcga tctgcgagac gcgggcgaag cgctgcggcg tgcacacgac
     3121 gacgctcggc tcggcatcgc cgatgaagta ttcgagctcg gcgctctggt aggcgctgtt
     3181 gagcggcagg tgcacgaagc ccgcgcgcag gatcgcgagg tagagcagca gcgcctcgac
     3241 ggatttctcg gtctgcaccg cgactcgcgc gcccggcggc aggccgagcg agtcgagcag
     3301 gttcgcgagc atcgcggtgg cgcgatcgat gtcgcgccag ctgtagcgca gcgccggccc
     3361 gtcggccgtt tcgatcgcgg tgctgtcgag gtcggcaggg aatgcgctct gcagcgcgac
     3421 gaaca
//
LOCUS       DASVHM010000909         1598 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1296366, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000909 DASVHM010000000
VERSION     DASVHM010000909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1296366"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..>1598
                     /locus_tag="VF308_16735"
     CDS             187..>1598
                     /locus_tag="VF308_16735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438351.1"
                     /translation="MKAVSHVRLALRAVVALAAAGALVVASPAVGSAQAVSEPTHEVK
                     DPHYGDTLFHFFQDHYFTSVTTLMVSQHFDRVAHHADEAEVLRGGMLASYGLIREAGE
                     IFARLIEKGASPTVRDRAWFYLAKIRYQRGYLVEAEEAIAHVEHRLPAELEEERGLLQ
                     ANLLMARADYSGAAAALNGLIGKTVSARYVRYNLGIALLKAGDTARGTTLLDELGREA
                     AADEEYRSLRDRANVALGFSALTENRPKDARTYLERVRLQSLQSNNALLGFGWAADAL
                     KEPKLALVPWIELAQRNVGDSAVLEARIAVPYAYAELGAYGQALERYEGAIAAFEREN
                     ADLRESIKAIRTGTLIEALVERNPGEEMGWFWTIHSLPEMPHARHLAQVLAQHEFQEA
                     LKNYRDLRFLAQNLDEWRDKLVVFDDMLVTRRKAFAERLPQVREREQKIGLEALVQRR
                     DSVTTEVARGETEGDGVAFA"
BASE COUNT          286 a          539 c          536 g          237 t
ORIGIN      
        1 gcaccggcga acacgagttg gccgcgttct tcaccggcaa gggcccgcac gatcgtgact
       61 acaagcgcgg cgcgaccgtc aagttcgaga agggcaccga agccaagtac atcgagctgc
      121 gcatccagga ctccacgggc aagctgcagc ccgagttcga cgtcaagctc tggcagtgac
      181 gcgtccatga aagcggtttc gcacgttcgc ctcgcgctgc gcgcggtcgt cgcgctcgcg
      241 gcggccggtg cgctcgtggt cgcttcaccg gctgtgggga gtgcacaagc ggtcagcgag
      301 ccgacccatg aggtcaagga tccgcactac ggcgacacgc tgttccactt cttccaggat
      361 cactatttca cctcggtgac gacgctgatg gtgtcgcagc acttcgaccg cgtggcgcac
      421 catgccgacg aagccgaggt gctgcgcggc ggcatgctgg cctcttacgg actgatccgc
      481 gaggcgggcg agatcttcgc gcggctgatc gaaaagggcg cctcgccgac ggtgcgcgat
      541 cgcgcctggt tctacctcgc gaagatccgc taccagcgcg gctacctggt cgaagccgag
      601 gaggcgatcg cgcatgtcga gcaccgcctg cccgccgagc tcgaagagga acgcggcctg
      661 ctccaggcca acctgctgat ggcgcgcgcc gactactccg gtgcggcggc ggccctgaat
      721 ggcctaatcg gcaagaccgt gagcgcgcgc tatgtgcgct acaacctcgg catcgcgctg
      781 ctgaaggccg gcgacacggc gcgcggcacg accctgctcg acgaactcgg gcgcgaagcg
      841 gcggcggacg aggagtaccg cagtctgcgc gaccgcgcca acgtggcgct cgggttctcc
      901 gcgctcaccg agaacaggcc gaaagacgcc cgcacctatc tcgagcgtgt gcgcctgcag
      961 agcctgcagt cgaacaatgc cctgctcggc ttcggctggg ctgcggacgc gctgaaggag
     1021 ccgaagctgg cgctggtgcc gtggatcgaa ctcgcgcagc gcaacgttgg cgattcggcc
     1081 gtactcgaag cgcggatcgc cgtgccgtat gcctatgcgg agctcggcgc ctacggtcaa
     1141 gcgctcgagc gctacgaggg cgcgatcgcg gccttcgaac gcgagaacgc cgacctgagg
     1201 gaatcgatca aggcgatccg cactggcacg ctgatcgaag cgctcgtcga acgaaacccg
     1261 ggcgaggaga tgggatggtt ctggaccatc cacagcctgc ccgagatgcc gcatgcccgg
     1321 catcttgcgc aggtgctggc gcagcacgag ttccaggagg cgctcaagaa ctatcgcgac
     1381 ctgcgcttcc tcgcccagaa cctcgacgag tggcgcgaca agctcgtcgt cttcgacgac
     1441 atgctcgtca cccgtcgcaa ggccttcgcc gagcgcctgc cgcaagtgcg cgagcgcgaa
     1501 caaaagatcg gcctcgaggc cctcgtccaa cggcgcgatt ccgtcacgac cgaggtcgcg
     1561 cgcggggaaa ccgaaggcga cggcgtcgcc ttcgccga
//
LOCUS       DASVHM010000910         1620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_647216, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000910 DASVHM010000000
VERSION     DASVHM010000910.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1620
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_647216"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1620
                     /gene="aceE"
                     /locus_tag="VF308_16740"
     CDS             <1..>1620
                     /gene="aceE"
                     /locus_tag="VF308_16740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829721.1"
                     /note="E1 component; part of pyruvate dehydrogenase; forms
                     a complex with DlaT and LpdC; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HEX7438352.1"
                     /translation="WGSYWDPLLARDQDGTLRRVMMDTVDGDYQAMKANDGAFVRKHF
                     FGQDPKLLEMVAKMSDEDVWRLNRGGHDPQKVYAAFHRAANHEGQPTVLLVKTVKGFG
                     MGKSGEGKNTAHQTKKLVDEDVHAFRDRWNIPLPDDALGDIPFYRPADDTPEMKYLHE
                     RRKALGGYLPRRRTRADERLKVPTLDTFKAVLEPTAEGREISTTQAFVRFLTQLLRDK
                     ELGPRAVPILVDEARTFGMEGLFRQIGIYNPAGQNYTPVDRDQVMYYREDKSGQVLQE
                     GINEPGGMSSWIAAATSYSTNNRIMVPFYVYYSMFGFQRVGDLAWAAGDMQARGFLLG
                     GTSGRTTLNGEGLQHEDGHSHILAGTIPNCISYDPTFAHEVGVILHHGLVRMVEQQDN
                     VYFYLTLLNENYAQPGLRVGTEQEIVKGMYLLQEGAKKAPRVNLLGSGTILRESIAAR
                     ELLDSDWGIAANVWSCPSFNQLARDGQDAERWNLLHPTERARVPFVAQQLDKFAGPVI
                     ASTDYMKNYAEQIRAFLPKGRTYKVLGTDGFG"
BASE COUNT          303 a          561 c          537 g          219 t
ORIGIN      
        1 tggggcagct actgggatcc gctcctcgcc cgcgatcagg acggcaccct gcgccgggtg
       61 atgatggaca ccgtcgacgg cgactaccag gcgatgaagg ccaacgacgg cgcgttcgtc
      121 cgcaagcact tcttcggcca ggatccgaag ctgctcgaga tggtcgcgaa gatgagcgac
      181 gaggacgtct ggcgcctcaa ccgcggcggc cacgacccgc agaaggtcta cgccgcgttc
      241 catcgcgccg ccaaccacga agggcagccg acggtcctgc tcgtgaagac ggtcaagggc
      301 ttcggcatgg gcaagagcgg cgagggcaag aacaccgcgc accagaccaa gaagctcgtc
      361 gatgaggacg tgcacgcgtt ccgcgaccgc tggaacatcc cgctccctga cgatgcgctc
      421 ggcgacatcc ccttctacag gccggccgac gacacgccgg agatgaagta cctgcacgag
      481 cggcgcaagg cgctcggcgg ctacctgccg cgccggcgca ccagggccga cgagcggctc
      541 aaggtgccga cgctcgacac cttcaaggcg gtcctcgagc cgactgccga agggcgagag
      601 atctcgacga cgcaggcgtt cgtgcgcttc ctgacccagc tgctgcgcga caaggagctc
      661 gggccgcgcg cggtgccgat cctcgtcgac gaggcgcgca ccttcggcat ggagggcctg
      721 ttccgccaga tcggcatcta caaccccgcg ggccagaact acaccccggt cgaccgcgac
      781 caagtcatgt actaccgcga ggacaagagc ggtcaggtgc tgcaggaagg gatcaacgag
      841 ccgggcggca tgagcagctg gatcgccgcg gcgacgtcgt actcgacgaa caaccggatc
      901 atggtgccgt tctacgtgta ctactcgatg ttcggcttcc agcgcgtcgg cgacctcgcc
      961 tgggcggccg gcgacatgca ggcgcgcggc ttcctgctcg gcggcacctc gggccggacg
     1021 acgctcaacg gcgagggctt gcagcacgag gacggccaca gccacatcct cgccggcacg
     1081 atcccgaact gcatctcgta cgacccgacg ttcgcgcacg aggtcggtgt gatcctgcac
     1141 cacgggctcg tgcgcatggt cgagcagcag gacaacgtct acttctacct gacgctgctc
     1201 aacgagaact acgcgcagcc ggggctgcgc gtcggcaccg agcaggagat cgtcaagggc
     1261 atgtacctgc tgcaggaagg cgcgaagaag gcgccgcgcg tcaacctgct cggcagcggc
     1321 acgatcctgc gcgagagcat cgccgcgcgc gagctgctcg acagcgactg gggcatcgcc
     1381 gccaacgtct ggagctgccc gagcttcaac cagctggcgc gcgacggcca ggacgccgag
     1441 cgctggaacc tgctccatcc gaccgagcgg gcgcgcgtgc ctttcgtcgc tcagcagctc
     1501 gacaagttcg ccggcccggt gatcgcctcg accgactaca tgaagaacta cgccgagcag
     1561 atccgcgcct tcctgcccaa gggccgcacg tacaaggtgc tgggcaccga cggcttcggc
//
LOCUS       DASVHM010000911         2185 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1296754, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000911 DASVHM010000000
VERSION     DASVHM010000911.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2185
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1296754"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2185)
                     /gene="ileS"
                     /locus_tag="VF308_16745"
     CDS             complement(<1..>2185)
                     /gene="ileS"
                     /locus_tag="VF308_16745"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEX7438353.1"
                     /translation="GLSRADVQARSRAYATEQIAQQMADFKRVGVLGDWEHPYLTMDF
                     CNEAGEIRALKRIIERGFVYRGLKPVYWCFDCGSSLAEFEIEYGDKKSHTVDVGFLAA
                     EPDRLAAAFGLASLAKDAFAMIWTTTPWTLPANQALNLNPELHYALVDTERGLLVLAV
                     ALVEKCLERYALEGRVVATAKGTALAGLRFRHPLSAVHPGYDRVAPVYLADYATADDG
                     TGLVHSSPAYGVEDFNSCRAHGMTVEDILNPVQGNGSYDAALPLFGGMNIWKAGHAIV
                     DALRDAGRLFATSTLVHSYPHCWRHKSPVIYRAAAQWFVRMDAADASSAGVFAVDPPA
                     QTLRQLALGAIEETQFYPENGKLRLHDMIANRPDWCISRQRNWGVPLPFFLHKDSGEL
                     HPDTMALIERAAAIVAEGGVEAWSRLSAEDVLGAEGAHSAAHYTKSNDILDVWFDSGS
                     TFFHVLRGSHPGTTSEDGPEADLYLEGHDQHRGWFHSSLLIACAMEGHAPYRGLLTHG
                     FTVDGSGRKMSKSLGNFIALHAVTQKLGAEIIRLWCAATDYSGDLAIDEKILARVVDS
                     YRRIRNTLRFLLANTSDFDPQVDALPLDELLEIDRWALARTAQLQQEIVGSFDAAAGV
                     FKGGHYGVYEFHPVVAKLQIFCSEDLGAFYLDILKDRLYTTAPKSHGRRSAQTALWHI
                     TQAMLRWMAPFLSFTAEEAWKVFAPGEPLSIFTETYSQTSAWPGAE"
BASE COUNT          347 a          703 c          779 g          356 t
ORIGIN      
        1 gctccgcgcc cggccaggca gaggtctggc tgtaggtttc ggtgaagatc gagagcggct
       61 cgccgggcgc gaacaccttc cacgcttcct cggcggtgaa gctgaggaag ggcgccatcc
      121 agcgcagcat cgcctgcgtg atgtgccaga gcgcggtctg cgccgaacgc cggccgtgcg
      181 acttcggcgc ggtggtgtag agccggtcct tgaggatgtc gaggtagaac gcgccgaggt
      241 cttccgagca gaagatctgc agcttcgcga ccaccgggtg gaactcgtag acgccgtagt
      301 ggccgccctt gaagacgccg gccgcggcat cgaaggagcc gacgatctcc tgctgcagct
      361 gcgccgtccg ggcgagcgcc cagcggtcga tctcgaggag ttcgtccagg ggcagcgcat
      421 cgacctgcgg atcgaagtcg ctcgtgttgg cgagcaggaa gcgcagcgtg ttgcggatgc
      481 gccggtacga atcgacgacg cgcgccagga tcttttcgtc gatcgcgagg tcgcccgagt
      541 agtcggtggc ggcgcaccag agccggatga tctcggcgcc gagcttttgc gtgaccgcat
      601 gcagggcgat gaagttgccg aggctcttgc tcatcttgcg cccggagccg tcgaccgtga
      661 agccgtgcgt cagcaggccg cggtacggcg catggccttc catcgcgcag gcgatcagca
      721 gcgacgaatg gaaccagccg cggtgctggt cgtgcccttc gaggtagagg tcggcctcgg
      781 gcccgtcctc gctcgtcgtg ccagggtgac tgccgcgcag cacgtggaag aaggtcgacc
      841 cggagtcgaa ccagacgtcg aggatgtcgt tgctcttcgt gtagtgcgcc gccgaatgcg
      901 cgccctcggc gccgagcacg tcttcggcgc tgaggcgcga ccaggcttcg acaccgccct
      961 cggcgacgat ggccgcggcg cgctcgatca gcgccatcgt gtccgggtgc agctcgccgc
     1021 tgtccttgtg caggaagaac ggcagcggca cgccccagtt gcgctgccgg ctgatgcacc
     1081 agtcggggcg gttggcgatc atgtcgtgca ggcgcagctt gccgttctcc ggatagaact
     1141 gcgtctcctc gatcgcgccg agcgcgagtt ggcgcagcgt ctgtgcgggt ggatcgaccg
     1201 cgaagacacc ggcgctcgaa gcgtccgccg cgtccatgcg aacgaaccac tgcgccgcgg
     1261 cgcggtagat cacgggcgac ttgtggcgcc agcaatgcgg gtagctgtgc accagcgtcg
     1321 aggtcgcgaa gaggcggccc gcgtcgcgca gcgcgtcgac gatcgcgtgc ccggccttcc
     1381 agatgttcat gccgccgaag agcggcagcg ccgcatcgta ggagccgttg ccctggaccg
     1441 gattgaggat gtcctcgacc gtcatgccat gggcccggca cgagttgaag tcctcgacgc
     1501 cgtaggccgg cgacgaatgg acgagcccgg tgccgtcgtc ggcggtcgca tagtcggcca
     1561 ggtacaccgg cgccacgcgg tcgtaacccg gatgcacggc gctcagggga tggcggaaac
     1621 gaagaccggc gagggccgtg cccttggccg tggcgacgac gcggccttcg agtgcgtagc
     1681 gttccaggca tttttcgacg agtgcgaccg cgagcaccag cagtccgcgc tcggtgtcga
     1741 ccaacgcata gtggagttcg gggttgaggt tgagcgcctg gttcgcgggc agggtccacg
     1801 gtgtcgtggt ccagatcatc gcgaacgcgt ccttggcgag cgacgccagg ccgaaggccg
     1861 cggccagcct gtcgggctcg gcggccagaa agccgacatc gacggtgtgc gacttcttgt
     1921 ccccgtactc gatctcgaac tcggcgagcg acgagccgca gtcgaagcac cagtacaccg
     1981 gcttcaagcc gcggtagacg aagccacgct cgatgatccg cttcaacgcg cggatctcgc
     2041 ccgcctcgtt gcagaaatcc atggtcaggt acggatgctc ccagtcgccg agcacaccga
     2101 cgcgcttgaa gtcggccatc tgctgggcga tctgctcggt cgcgtaggcg cggcttctgg
     2161 cttgcacatc ggcccggctc aggcc
//
LOCUS       DASVHM010000912         2465 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_792910, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000912 DASVHM010000000
VERSION     DASVHM010000912.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2465
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_792910"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..815)
                     /locus_tag="VF308_16750"
     CDS             complement(<1..815)
                     /locus_tag="VF308_16750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008905457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7438354.1"
                     /translation="MKNRLLSALAGLGLAFAGTLPASAQTATGQPVKFALCYDLSKAY
                     TFVTPQISQAARDYAEILNQKGGLEGHPIEIIVQDHGNEPQRGIECYEKLKREGVMVF
                     DMLSTPVSRAVLPRIMADGNILLQSFVGRGDAIDGDVFKWVFPIGPTYWGQMANDIQY
                     IKTKSNNNMKDVKIAFIYPDYPFGQEPIPILKTLAAKEGFELQLFPNPLPGKDQAAVW
                     TQIRRANPDWVISWNLSNMHVVAAREMKRNGVAMDKLITVNWLNEVDINNIGA"
     gene            complement(937..1809)
                     /locus_tag="VF308_16755"
     CDS             complement(937..1809)
                     /locus_tag="VF308_16755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004567381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX7438355.1"
                     /translation="MPARETIPEAPAPGTTGTGPVTPSAQRAPILTLNNVEVIYDHVA
                     LAIKGVSIEVPAGGMVALLGANGAGKSTTLKSISGLLRAERGLVTRGDLRFLGQGIDA
                     LLPQQRVKLGIAHVLEGRRVFEHLTPDENLVAASAVRGTRADMLRNRDRVYGYFPRLH
                     QRRTAQSGYLSGGEQQMLAIGRGLMTQPKLLMLDEPSLGLAPFLVAEIFEIVQRINRE
                     EGLSVLLVEQNAIAALEVVSHGYLMENGRIVMHDSAEAMKRNPDIQEFYLGGAEGRDF
                     RDIKHYSRRKRWLT"
     gene            complement(1820..>2465)
                     /locus_tag="VF308_16760"
     CDS             complement(1820..>2465)
                     /locus_tag="VF308_16760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX7438356.1"
                     /translation="VISHVPAISGGTQATLQAPPMKLLGQPVTSEIGFYFVALAWCLI
                     VTMFMLNLRRTALGRALVAVREKDFAAAVIGVHSFRYKLVAFATSSFIGGVSGAILIF
                     TFYRAVTPEQFAVNVSIELLAMVIVGGLGSIIGSYFGAAFILLMPGLINSLIGWIAQL
                     VGANLSVEALAHIPHAVYGALIIVFLLIEPMGLGKMYANLRNYLLVWPFGYARK"
BASE COUNT          407 a          778 c          844 g          436 t
ORIGIN      
        1 tcggcgccga tgttgttgat gtcgacctcg ttgagccagt tcaccgtgat cagcttgtcc
       61 atcgccacgc cgttgcgctt catttcgcgc gccgcgacga cgtgcatgtt ggacaggttc
      121 cagctgatga cccagtcggg gttggcgcga cggatctgcg tccagacggc agcctggtcc
      181 ttgccgggaa gcgggttcgg gaacagctgc agctcaaagc cttccttggc cgcaagcgtc
      241 ttcaggatcg ggatcggctc ctgcccgaac gggtagtcgg ggtagatgaa cgcgatcttc
      301 acgtccttca tgttgttgtt cgacttggtc ttgatgtact ggatgtcgtt ggccatctgg
      361 ccccagtagg tcgggccgat cggaaacacc cacttgaaga cgtcgccgtc gatcgcgtcg
      421 ccgcggccga cgaacgactg cagcaggatg ttgccgtcgg ccatgatgcg cggcagcacc
      481 gcgcgcgaga ccggcgtcga cagcatgtcg aacaccatca cgccctcgcg cttcaacttc
      541 tcgtagcact cgatgccgcg ctgcggctcg ttgccgtggt cctgcacgat gatctcgatc
      601 gggtggccct cgaggccgcc cttctggttc aggatctcgg cgtagtcgcg cgccgcctgc
      661 gagatctgcg gcgtgacgaa ggtgtaggcc ttgctgaggt cgtagcagag cgcgaacttc
      721 accggctggc cggtggcggt ctgcgcgctc gccggcagcg tgccggcgaa cgcgaggccg
      781 aggcccgcca gggccgaaag caatctgttc ttcatatcgg ggtctcctac ttcgtacggg
      841 ttttcaaagg ggtccggggc accttgtacg gtggtgccgg gagtcgaacg tcgaaaccgg
      901 tgccagagcc gacgcgggtg ccgctcctgg cgctcctcat gtgagccagc gcttgcgccg
      961 gctgtagtgc ttgatgtcgc gaaagtcgcg gccctccgcg ccgccgaggt agaactcctg
     1021 gatgtcggga ttgcgcttca tcgcctcggc gctgtcgtgc atcacgatgc ggccgttttc
     1081 catcaggtag ccgtgcgaca ccacctcgag cgcggcgatg gcgttctgct cgaccagcag
     1141 cacggaaagc ccttcctccc ggttgatacg ctggacgatc tcaaaaatct cggcaacaag
     1201 gaagggggca agcccgaggc tcggctcgtc gagcatcagg agcttgggct gggtcatgag
     1261 gccgcggccg atggcgagca tctgctgctc gccacccgaa agatagcccg actgggccgt
     1321 gcggcgctga tgcaggcgcg gaaagtagcc gtagacgcgg tcgcggttgc gcagcatgtc
     1381 ggcgcgggtt ccccgcaccg cggacgctgc gaccaggttc tcgtcgggcg tcaggtgttc
     1441 gaacacgcgc cgtccctcga gcacgtgtgc gatgccgagc ttgacacgct gttgcggcaa
     1501 cagcgcgtcg atgccctgac ccagaaagcg cagatcgccg cgcgtcacca gcccgcgctc
     1561 ggcgcgcagc aggccgctga tcgatttcag cgtcgtgctc ttgccggcgc cgttggcgcc
     1621 gaggagcgcg accatgccgc ccgccggcac ctcgatcgag acccccttga tcgcgagcgc
     1681 gacatggtcg tagatcacct cgacgttgtt gagcgtgagg atgggcgcgc gttgcgccga
     1741 gggcgtgacc gggccggtgc ccgtcgtacc cggcgccggg gcctcgggaa tggtttcgcg
     1801 cgctggcatc gggtcctccc tatttgcggg catagccgaa cggccacacc agcaggtagt
     1861 tgcgcaggtt cgcgtacatc ttgccgaggc ccatcggctc gatcagcagg aagacgatga
     1921 tgagcgcgcc gtagaccgca tgaggaatgt gcgcgagcgc ttcgacgctc aggttcgcgc
     1981 cgacgagctg cgcgatccag ccgatcaggc tgttgatgag cccgggcatc agcaggatga
     2041 aggcggcccc gaaatagctg ccgatgatgc tgcctaggcc gccgacgatc accatcgcga
     2101 gcagctcgat cgagacgttg accgcgaact gctccggcgt cacggcgcgg tagaaggtga
     2161 agatcaggat cgcgccgctc acgccgccga tgaacgagga ggtcgcgaag gcgacgagct
     2221 tgtagcggaa gctgtgcacg ccgatcaccg ccgcggcgaa gtccttctcg cgcaccgcga
     2281 cgagggcgcg gccgagcgcg gtgcggcgca ggttcagcat gaacatcgtg acaatcaggc
     2341 accaggccag ggcgacaaag tagaaaccga tctcggacgt gacgggttgg ccgaggagct
     2401 tcatcggcgg ggcctgcagc gtggcctggg tgccgccgct gattgccggc acgtgggaaa
     2461 tcacc
//
LOCUS       DASVHM010000913         2339 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_67540, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000913 DASVHM010000000
VERSION     DASVHM010000913.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2339
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67540"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..725)
                     /locus_tag="VF308_16765"
     CDS             complement(<1..725)
                     /locus_tag="VF308_16765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEX7438357.1"
                     /translation="MKSLYLRIYATLVVVLLLFASLSGWLFQRQIEHERGRAESVLSE
                     RMGAWAELIQRSLPGTDASTESQAAALSEWSQRLRLPLALDSAGGARIGASESFLRRQ
                     ADGARALAIRLEDGRTLWVMRPGQFRPPGAGPRRPDGPNLGEGLGGPPLLPFVPPSWQ
                     RGIGLVVILVLLFIAVAAGAYPVVRRLTRRLESLKQGVEHFGAGHLDHRVAISGNDEV
                     AAVAASFNVAAGRVEALVQSHRSL"
     gene            complement(722..1444)
                     /locus_tag="VF308_16770"
     CDS             complement(722..1444)
                     /locus_tag="VF308_16770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX7438358.1"
                     /translation="MTPRLLLIDDDARLAAMVTDYLGRAGFEIETAASLAEGRRSLLE
                     RSFDALVLDLMLPDGDGLDLCRELRGQARTRQLPLLMLTARGEPLDRIVGLELGADDY
                     LPKPFEPRELLARVKALLRRAAPQASGDDVLRFGRLEVDLGARVARLDGIPCDLTGHQ
                     FDLLVVLAQSPGRVLSRDQIMDSLKGHPLEAFDRSIDVHISRIRSVIEDDPKTPRRVL
                     TVRGAGYVFARKQDADDHAHRE"
     gene            complement(1526..2053)
                     /locus_tag="VF308_16775"
     CDS             complement(1526..2053)
                     /locus_tag="VF308_16775"
                     /inference="COORDINATES: protein motif:HMM:NF025173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HEX7438359.1"
                     /translation="MTNATAAGTRGRVRLLMLGMLMAVLATWAASTWAQPMGHGMHRG
                     MGDGMMMGSPRMIDHMLDGLGATDAQRSQIKQIAQAAAADLKTQRDAGRGLRERGMQI
                     FTAPNVDPAAAESLRQQMLAQHDQASKRMTQAMLDISRVLTPEQRAKLGERMKERAAR
                     MHDRMERMQREHPHQ"
BASE COUNT          359 a          795 c          838 g          347 t
ORIGIN      
        1 agcgaccggt gcgactggac cagcgcttcc acgcgcccgg ccgcgacgtt gaagctcgcc
       61 gcgacggcgg cgacttcgtc gttgccggag atggcgacgc ggtggtccaa atgacccgcc
      121 ccgaaatgct ccacgccctg cttgagcgac tcgaggcggc gcgtgaggcg gcgcacgacc
      181 ggataggcgc cggctgcgac ggcgatgaag agaagcacca ggatcacgac gaggccgatg
      241 ccgcgctgcc acgacggcgg cacgaaaggc agcagcggcg gcccgccgag gccttcgccc
      301 aggttcggac cgtcgggccg gcgtggaccc gctccgggcg gccggaattg cccgggccgc
      361 atgacccaca gcgtgcgtcc gtcttcgagg cggatggcga gcgcgcgggc gccgtcagcc
      421 tggcggcgca ggaacgattc ggaggcaccg atgcgcgcgc cgccggcact gtcgagcgca
      481 agcggcaggc gcaggcgctg cgaccattcg ctcagggcgg cggcctggct ctcggtgctc
      541 gcgtcggtgc cgggtagcga acgctggatc agctcggccc acgcccccat gcgctcggag
      601 agcaccgatt cggcacgccc acgctcgtgc tcgatctggc gttggaagag ccatccggag
      661 agcgacgcga agagcagcag cactaccacc agcgtcgcat agatgcgcag atagaggctt
      721 ttcattcgcg atgggcgtgg tcgtcggcgt cctgcttcct ggcgaacacg tagcccgcac
      781 cgcgcaccgt aagcacacgg cgcggcgtct tcggatcgtc ttcgatgacc gagcggatgc
      841 gcgagatgtg cacgtcgatc gaacggtcga aggcttcgag cgggtggccc ttcagcgaat
      901 ccatgatctg gtcgcgcgag agcacccgcc cggggctttg cgcgagcacg acgagcaggt
      961 cgaactggtg accggtgagg tcgcagggta tgccgtcgag acgcgccacg cgcgccccca
     1021 ggtcgacctc gaggcggccg aagcgcagca cgtcgtcgcc gctcgcctgc ggcgccgccc
     1081 gccgcaagag cgccttcacg cgggcgagca gttcgcgcgg ctcgaaaggc ttgggcaggt
     1141 agtcgtcggc accgagttcg aggccgacga tgcgatcgag cggctcgccg cgcgccgtca
     1201 gcatcagcag cggcaactgg cgcgtgcgcg cctggccgcg caactcgcgg cacagatcga
     1261 ggccgtcgcc gtcgggcagc atcaggtcga ggacgagcgc gtcgaacgag cgctccaaca
     1321 ggctccggcg accctccgcg agcgacgccg cggtctcgat ctcgaagccg gcgcggccga
     1381 ggtagtcggt caccatcgcg gcgaggcggg cgtcatcgtc gatcagcagg aggcgtggcg
     1441 tcatcgtgtg cgcaagcgaa ttcaggatgg gaaaacgccc tgcaggcaac cgcatgcagg
     1501 gcgtcggtgc ggccgcagca taagcctatt ggtgcggatg ctcccgctgc atgcgctcca
     1561 tgcggtcgtg catcctcgcc gcgcgctcct tcatgcgctc gccgagcttg gcgcgctgct
     1621 ccggcgtcag gacccggctg atgtcgagca tggcctgcgt catgcgcttg ctggcctggt
     1681 cgtgctgggc cagcatctgc tggcgcaggc tttccgcggc ggcggggtcg acattgggtg
     1741 cggtgaagat ctgcatgccg cgctcgcgca ggccacggcc ggcgtcgcgt tgggtcttca
     1801 gatcggcggc ggccgcctgg gcgatctgct tgatctggct gcgctgcgca tcggtcgcgc
     1861 cgagcccgtc gagcatgtgg tcgatcatgc ggggcgagcc catcatcatg ccgtcgccca
     1921 ttccacggtg catgccgtgg cccatcggct gggcccaggt cgacgccgcc catgtcgcca
     1981 gcaccgccat cagcatgccc agcatcagca gccggacccg tccccgggtg ccggcagcgg
     2041 tcgcgttcgt catcgttgtc tgaatcactg actttctccg ttgaaccggg caggtgcgcc
     2101 cgtgaaagaa tggtgcgcgt cggcagtgaa gagggcttga ctgcgccgta aagtagtgtg
     2161 aacccgggag aggacaccat gtttcccacg acgatcgtcg gcagctatcc gcagcccgac
     2221 tggctgatcg atcggacaaa gctcgccggg cgcttcccgc cccgggtccg agcgcgcgag
     2281 ctctggcgcg tggccgaccc ctggctgcag caggcgcagg acgatgcgac cctgctcgc
//
LOCUS       DASVHM010000914         6978 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_67580, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000914 DASVHM010000000
VERSION     DASVHM010000914.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6978
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67580"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..272
                     /locus_tag="VF308_16780"
     CDS             <1..272
                     /locus_tag="VF308_16780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR03118 family protein"
                     /protein_id="HEX7438360.1"
                     /translation="NLISDVNAASNPYSSPNVDTHLVNGWGVAFNPQGYVWVANAGTS
                     TSTLYDGNGLPQSLVVSIPAGTAGSANPTGIAFNGSQGFQVTQGG"
     gene            314..988
                     /locus_tag="VF308_16785"
     CDS             314..988
                     /locus_tag="VF308_16785"
                     /inference="COORDINATES: protein motif:HMM:TIGR03118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03118 family protein"
                     /protein_id="HEX7438361.1"
                     /translation="MSGWSPNVNLNSAVKVVDGAAQAKVYKGLAIASQGGAPFLYATD
                     FHNGVVDVFDSNFAKVGSVGAFTDATLPAGYAPFGIQAIGNLVYVSFAKQDGQAQDEV
                     KGVGLGAVDVFDASGTLVKRLIPAGGKLNAAWGMALAPADFGRFSSALLVGNFGDGTI
                     NAFDPATGAFLGTLSRSDGAPIAIDGLWGIAFGNGINAQPTNTLFYAAGPAGETPGVY
                     GRIDNR"
     gene            1031..1600
                     /locus_tag="VF308_16790"
     CDS             1031..1600
                     /locus_tag="VF308_16790"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX7438362.1"
                     /translation="MQRLLLIAASLILALALSDARSAGGGGGGGGGGDNEVATQDTDY
                     QAAMAAVKKNDWKQVVARMTSFTQRNPGNADAWNELGHAHRKMGDLDNAFKHYAKALQ
                     IDPKHKGAHEYLGEAYLQAGDLERAEQELRALDSICFLPCEEYTDLKEQIRRYKSEHP
                     APAARLTGTPGAGDATTVPPARRASAAIA"
     gene            complement(1554..3173)
                     /locus_tag="VF308_16795"
     CDS             complement(1554..3173)
                     /locus_tag="VF308_16795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012747145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HEX7438363.1"
                     /translation="MATGAAGAIRIERARPWAWCWLALAACLAGCATSLPQLDGQTRA
                     MNASEAVPLSASTTLGNIAATSTPSPELSGFRLMPLGTFSLDARVQLARRAEATLDVQ
                     YYDFENDETGRYLIRALSDAAGRGVRVRVLIDDLYTGGHDDFFLGFAAHKNVEVRLFN
                     PFCCARAHGQAARFIAATGDWSRVNHRMHNKLFIADGAMAVIGGRNIANEYFLRSAGE
                     NFIDVDAFTVGQVIPPLQNLFDRYWNSAPVYPFEVVAKSDLTAAQLREKFDRDTSPEQ
                     TPPPPALPPNDILGYGPIADDLDGGRLGLIWGEAYVFADYPDKPFEDQSNGELLETSV
                     TYNVFEAIRMAEKEVVASSPYFVPGTRGMELLRDLRAKGVNISVLTNSLGATDEPVVH
                     LGYSHYREEMLRMGIDLYELSASRVKENKRMFLFGASLGHLHAKLVVIDRKRIFVGSM
                     NLDPRSATINTELGAVIDSPQLARELLRIIDIDRLQSAYRVRLRKNGSGVEWFSAEGD
                     KETVLTSEPDSSPWLRFKQWLLTPFVPEELL"
     gene            complement(3197..3772)
                     /locus_tag="VF308_16800"
     CDS             complement(3197..3772)
                     /locus_tag="VF308_16800"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEX7438364.1"
                     /translation="MDSRGYTLFDTPIGACGIAWSERGVSGLQLPEATAGRTRARLLG
                     RLPGTREASPPPPVRAAIAGIVALLQGEAVDLGAVELDETGVPPFHRRVYAVARGIGP
                     GATLTYGAIAERLGEPGSARAVGQALGSNPFAIIVPCHRVLAAGGRIGGFSARGGAAT
                     KRKMLMIEQARFGDAPDLFDDLSRPDGAPPT"
     gene            complement(3830..4444)
                     /locus_tag="VF308_16805"
     CDS             complement(3830..4444)
                     /locus_tag="VF308_16805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005798444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HEX7438365.1"
                     /translation="MFGIADYGSFVIAVIVFLMIPGPGNLALITSTGKGGVAGGLAAT
                     MGIIAGDQVLMWLAVAGVAALLSAYPPAFHAVQWLGAAYLAGLGLRMLLAKPGAAPVL
                     DIKPHHYFHQALMITLLNPKAIVFYMAFFPLFVDPARHQGFTTFAMMAATIAALTFAY
                     GLTVVLLTHRLAERLRARPVIARALNKLAGVFLIGFGVKLALSR"
     gene            4460..5713
                     /locus_tag="VF308_16810"
     CDS             4460..5713
                     /locus_tag="VF308_16810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012347413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX7438366.1"
                     /translation="MSKLHRSDNSTFIDAPPDRADVRARFLALVQEALSGGAFARLVL
                     AKPRAPGDLARVTVRELVLRGAPGLSFLYSHATRDITKNLSLAQGFATIGELIGGVFA
                     HAHLFTTTEEVELRVGRQGRAGLSRRKVARAAEALDGPPPHDRAKHRFVDIGRPWLAD
                     LGVTDAQGRLVPAMARKWKQINKFIEVFDHAYASSALKRRESVRVVDFGSGKGYLTFA
                     IYDHLRHALETDAQVTGVELRADLVELCNRAAERSALAGLRFVQGDVRTQAPEAIDVM
                     IALHACDTATDHALHVGIRAGASIILCSPCCHKQLRPQLRAPQLLRPMLQHGIHLGQQ
                     AEMVTDSLRALLLEAEGYATQVFEFVALEHTSKNKMILAVKRDTALDTGTLGAIREQI
                     RDIKAFYGIREHCLETLLAADAAVA"
     gene            complement(5723..6196)
                     /locus_tag="VF308_16815"
     CDS             complement(5723..6196)
                     /locus_tag="VF308_16815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013804563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEX7438367.1"
                     /translation="MPIDASEYEYAGFWIRVWAALIDTVLILFVTLPLLGALYGWDYA
                     FESSVDGGTFRPTEFAITWLLPAIAVLVFWRYRSATPGKMVIGARIVDATTGEPPSTW
                     QLIGRYLGYYVSSIPLCLGLIWVGFDRRKQGWHDKLANTVVIRSKRHGTEPVHFR"
     gene            complement(6246..6337)
                     /locus_tag="VF308_16820"
     tRNA            complement(6246..6337)
                     /locus_tag="VF308_16820"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6301..6303),aa:Sec,seq:tca)
     gene            complement(6344..>6978)
                     /locus_tag="VF308_16825"
     CDS             complement(6344..>6978)
                     /locus_tag="VF308_16825"
                     /inference="COORDINATES: protein motif:HMM:NF020671.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SelB C-terminal domain-containing protein"
                     /protein_id="HEX7438368.1"
                     /translation="LGIAPSHWEALRQRIAGALEAAHAAEPDVLGPSESALAAALGMR
                     APASLLRAAIQSLRQEGRVVRDGFCLRLAAHVPRTNPADAECFEQVRTVLLAAGLRPP
                     IVGELAARVGIELPALLEVLAASTRRGQLVQVARNRFFLPETVVELARIAAQLADESV
                     DRTFAAAAYRDRSGLGRNLTIELLEFLDRAGVTRFRDGRRGIARAGVVVT"
BASE COUNT         1144 a         2321 c         2442 g         1071 t
ORIGIN      
        1 ccaacctcat ctccgacgtc aatgccgcga gcaacccgta cagcagcccg aacgtcgaca
       61 cgcatctcgt caatggctgg ggagtcgcct tcaatccaca gggatacgtc tgggtcgcga
      121 atgcgggcac atcgacctcg acgctctatg acggcaacgg cctgccgcag tccctggtcg
      181 tgtcgatccc ggcgggcacc gccggcagcg cgaatcccac cggcatcgcg ttcaacggct
      241 cgcaaggctt tcaggtgacg caagggggct gagcgctgcg agtgtcttca tattcgtcgg
      301 cgaagccggc acggtgtcgg gctggtcacc caacgtgaac ctgaacagcg cggtgaaagt
      361 cgtcgacggg gcggcccagg cgaaggttta caaaggcctg gcgatcgcca gccagggcgg
      421 tgcgcctttc ctgtacgcga ccgatttcca caatggcgtc gtcgatgtct tcgactcgaa
      481 cttcgcgaag gtcgggagcg tcggtgcgtt caccgacgcc acgctgcccg ccggctacgc
      541 gccgttcgga atccaggcga tcggcaacct ggtctacgtc agcttcgcga agcaggacgg
      601 gcaagcgcag gatgaggtca agggcgtcgg gctcggcgcc gtcgacgtgt tcgacgcctc
      661 cggcaccttg gtcaagcggc tgatcccggc gggtggcaag ctcaatgcgg cttgggggat
      721 ggcgctcgcg ccggcggact tcggccggtt cagcagcgcc ttgctcgtcg gcaacttcgg
      781 cgatggaacg atcaatgcat tcgatccggc gaccggggcc ttcctcggca cgctctccag
      841 gtccgatggc gcgccgatcg cgatcgacgg cctgtggggc atcgccttcg gcaacggcat
      901 caatgcccag ccgaccaaca cgcttttcta cgccgcgggc cccgcaggag agacccccgg
      961 cgtctatggc cgcatcgaca atcgctgacc cgcgggccgg gccgtcccga tccgcgcaca
     1021 aggagttcat atgcaacgtc tgcttctgat cgctgcaagc ctgattcttg ccctggcgct
     1081 gtccgacgcg cggtctgccg gtggcggcgg cggtggcggc gggggtggtg acaacgaagt
     1141 cgcgacccag gacaccgact atcaggcggc gatggccgcc gtgaagaaga acgactggaa
     1201 acaggtggtc gcgcggatga catcgttcac ccagcgcaac ccgggcaatg ccgatgcctg
     1261 gaatgaactc ggccatgcac accgcaagat gggggacctg gacaacgcgt tcaagcacta
     1321 tgccaaggct ctgcagatcg acccgaagca caagggcgcc cacgaatacc tcggcgaggc
     1381 gtacttgcag gccggggatc ttgagcgcgc cgaacaggaa ttgcgcgccc tcgattcgat
     1441 ctgcttcctg ccttgcgagg agtacaccga cctgaaggag cagatccgtc gctacaagag
     1501 cgagcatccg gcgccggccg cgcggctgac cggcactccc ggcgcgggag acgctacaac
     1561 agttcctccg gcacgaaggg cgtcagcagc cattgcttga agcgcagcca gggcgatgaa
     1621 tcgggttcgc tggtcagcac cgtctccttg tcgccctcgg cgctgaacca ctcgaccccg
     1681 gagccgttct tgcgcaggcg cacgcggtag gcgctctgca ggcggtcgat gtcgatgatg
     1741 cgcagcagtt cgcgcgcgag ctgcgggctg tcgatgacgg cgccgagctc ggtgttgatc
     1801 gtcgccgagc gcgggtcgag gttcatggag ccgacgaaga tgcgcttgcg gtcgatcacg
     1861 acgagcttgg cgtgaaggtg tccgagcgag gcgccgaaga gaaacatgcg cttgttctcc
     1921 ttgacccgcg acgcgctcag ttcgtagagg tcgatgccca tgcgcagcat ctcctcgcgg
     1981 tagtggctgt agccgaggtg cacgaccggc tcgtcggtcg cgccgagcga attcgtcagc
     2041 acgctgatgt tcacgccctt ggcgcgcaag tcgcgcagca gctccatgcc gcgcgtgccg
     2101 ggcacgaagt agggcgacga cgcgaccact tccttctcgg ccatgcggat cgcctcgaac
     2161 acgttgtagg tcacgctcgt ctcgaggagc tcgccgttgg actggtcttc gaagggcttg
     2221 tcggggtagt cagcgaacac atacgcctcg ccccagatca ggccgagccg gccgccgtcg
     2281 aggtcgtcgg cgatcggccc gtagccgagg atgtcgttcg gcggcagcgc ggggggcggc
     2341 ggcgtctgct cggggctcgt gtcgcggtcg aacttctcgc gcagttgcgc ggctgtcagg
     2401 tcgctcttcg cgaccacctc gaacgggtag accggcgcgc tgttccagta gcgatcgaac
     2461 aggttttgca gcggcgggat cacctggccg accgtgaagg cgtcgacatc gatgaagttt
     2521 tcgccggcgc tgcgcaggaa atattcgttc gcgatgttgc gcccgccgat cacggccatc
     2581 gccccgtcgg cgatgaagag cttgttgtgc atgcggtggt tcacgcgcga ccagtcgcct
     2641 gtggcggcga tgaaccgggc tgcctggccg tgggcgcgcg cgcagcagaa cgggttgaag
     2701 aggcgcactt cgacattctt gtgggccgcg aagccgagaa agaaatcgtc gtggccaccg
     2761 gtgtagaggt cgtcgatgag gacgcggaca cgcacgccgc gtccggccgc atcgctcaag
     2821 gcgcggatca ggtagcggcc ggtctcgtcg ttctcgaagt cgtaatactg cacgtcgagc
     2881 gtggcttcgg cgcggcgcgc gagttgcacc cgcgcatcga gcgagaaggt gccgagcggc
     2941 atcagccgga acccggacag ttcgggcgat ggcgtcgagg tggcggcgat gttgccgagc
     3001 gtcgtgctcg ccgagagcgg aaccgcctcg ctcgcattca tcgcccgcgt ctggccgtcg
     3061 agctgcggca ggctcgtcgc gcagccggcg aggcatgctg cgagggcgag ccaacaccag
     3121 gcccaaggcc tcgcccgttc gatccggatc gcgccggccg cgcctgtcgc catggttttt
     3181 cgcctttcgt tgccgttcat gtcgggggcg cgccatccgg cctcgacagg tcgtcgaaaa
     3241 gatcgggcgc gtcgccgaat cgcgcctgct cgatcatcag cattttccgc ttggtcgccg
     3301 cgccgcctcg cgccgaaaag ccgccgatgc gcccgcccgc cgcgagcacg cgatgacacg
     3361 gcacgatgat cgcgaacggg ttgctgccga gcgcctgccc gacggcgcgc gcgctgccgg
     3421 gttcgccgag acgctcggcg atcgcgccgt aggtgagcgt cgcgccgggc ccgatgccgc
     3481 gcgccaccgc gtagacgcgt cgatgaaaag gcggcacgcc ggtttcgtcg agttcgacgg
     3541 cgccgaggtc gaccgcctcg ccttgcagca gcgcgacgat gccggcgatc gccgcgcgca
     3601 ccggtggcgg cgggctcgct tcccgggtcc cggggagacg gccgagcagg cgcgcgcggg
     3661 tgcggcccgc ggtcgcttcg ggcagttgca ggccgctgac gccgcgctcg ctccaggcga
     3721 tgccgcaggc accgatcggg gtgtcgaaaa gggtgtagcc gcgcgagtcc acagtgtgcg
     3781 aatcgtagcc gggccgccgg gccggatgcg ggcatgtcga atgccggtct cagcgcgaga
     3841 gcgcgagctt caccccgaat ccgatcagga acacgccggc cagcttgttg agggcgcgcg
     3901 cgatgaccgg ccgggcccgc agccgctcgg ccaggcggtg cgtcagcagc accacggtga
     3961 ggccgtacgc gaacgtcagc gcggcgatcg tcgcggccat catcgcaaac gtcgtgaagc
     4021 cctgatgacg cgccggatcg acgaagagcg ggaagaaggc catgtagaag acgatcgcct
     4081 tcggattgag caaggtgatc attagcgcct ggtggaaata gtggtgcggc ttgatgtcga
     4141 gcacgggcgc cgcgccgggt ttggccagca gcatccgcag accgagcccg gcgaggtacg
     4201 ccgcgccgag ccactgcacc gcgtgaaagg ccggcgggta ggcgctgaga agcgcagcga
     4261 cgccggcgac ggcgagccac atcaggacct ggtcgccggc gatgatgccc atcgtcgcgg
     4321 cgagacctcc ggccacgccg cccttgccgg tcgaggtgat cagcgccagg ttgcctggcc
     4381 ccgggatcat caggaagaca atcaccgcga tcacgaagga accgtagtcg gcaatcccga
     4441 acatcgaaag ctcccgccct tgagcaagct ccatcgtagc gacaattcca cattcatcga
     4501 cgcgcccccg gaccgcgccg atgtgcgcgc tcgctttctg gcgctcgtgc aggaggccct
     4561 gtcgggcggc gccttcgccc ggctggtgct ggccaagcct cgcgcgccag gcgacctcgc
     4621 gcgcgtgacc gtgcgcgagc tggtcctgcg cggcgcgccc ggcctgtcgt tcctgtacag
     4681 ccacgcaacc cgcgacatca cgaagaacct gtcgctcgcg caaggcttcg ccacgatcgg
     4741 cgaattgatc ggcggggtgt tcgcccacgc gcacctgttc acgacgacgg aagaggtcga
     4801 gttgcgcgtc ggtcggcagg gccgggccgg gttgagccgg cgcaaggtgg cgcgcgcggc
     4861 cgaggcgctc gacggcccgc cgccgcacga ccgcgcgaag caccgcttcg tcgacatcgg
     4921 ccggccctgg ctcgccgacc tcggcgtcac cgatgcgcag ggtcgcctcg tgccggcgat
     4981 ggcgcgcaag tggaagcaga tcaacaagtt catcgaggtc ttcgaccatg cctatgcgag
     5041 ctcggcgctc aagcgccggg agtcggtgcg cgtcgtcgac ttcggctcgg gcaagggcta
     5101 cctgacattc gcgatctacg atcacctgcg ccacgcgctc gagaccgacg cgcaggtcac
     5161 cggcgtcgag ctgcgcgcgg acctggtcga gctctgcaac cgcgctgccg agcgctcggc
     5221 gctggcgggc ctgcgcttcg tgcagggcga cgtgcgcacg caggctccgg aggcgatcga
     5281 cgtgatgatc gcgctgcacg cctgcgatac cgcgaccgac catgcgctgc acgtcggcat
     5341 tcgcgcgggc gcctcgatca tcctgtgctc gccgtgctgc cacaagcagc tgcggccgca
     5401 gctgcgcgcg ccgcagctct tgcggccgat gcttcagcac ggcattcacc tggggcagca
     5461 ggccgagatg gtgaccgaca gcctgcgcgc gctgctgctc gaggccgagg gctatgcgac
     5521 gcaggtgttc gagttcgtcg cgctcgagca cacgagcaag aacaagatga tcctcgcggt
     5581 caagcgcgac acggccctcg acaccgggac gctcggggcg atcagggagc agatccgcga
     5641 tatcaaggcg ttctacggca tccgcgagca ctgcctcgag acgctgctcg ccgcggacgc
     5701 tgccgtggct tgaaacgcgg cgctatctga agtgaaccgg ttcggtcccg tggcgcttgc
     5761 tgcggatgac caccgtgttg gcgagcttgt cgtgccagcc ttgcttgcgg cggtcgaacc
     5821 cgacccagat caggccgagg cagagcggga tcgaggagac gtagtagccg agatagcggc
     5881 cgatcagctg ccaggtgctc gggggctccc cggtcgtcgc gtcgacgatc ctcgcgccga
     5941 tcaccatctt gcccggcgtc gccgagcggt agcgccagaa cacgagcacg gcgatcgcgg
     6001 gtaggagcca ggtgatggcg aattcggtcg ggcgaaaggt cccgccgtcg acgctcgatt
     6061 cgaacgcata gtcccagcca tagagcgcac cgagcagcgg caaggtcacg aagaggatga
     6121 ggacggtgtc gatcagcgcc gcccagacgc ggatccagaa cccggcgtat tcgtactcgc
     6181 ttgcatcgat gggcatggaa gggctcccga agaaagggtc aaccgcgtcg cccgggggcg
     6241 gagggcggaa aagagtggga gtcgaaccca ccagacacgc tgcgcgcgtc tcgccggttt
     6301 tgaagaccgg gcgctccacc ggaagcgctt ctcttcctca tcttcacgtt accacgaccc
     6361 ctgcgcgcgc gatgccgcgg cggccgtccc gaaagcgcgt gacgccggcc cggtcgagga
     6421 attcgaggag ctcgatcgtc aggttgcggc caagcccgct gcggtcgcgg taggcggcgg
     6481 cggcaaaggt ccggtccacc gattcgtcgg ccaattgcgc ggcgatgcgc gccagttcga
     6541 cgaccgtttc cggcaggaag aaccggtttc tcgccacttg caccagctgg ccgcggcggg
     6601 tcgaggcggc caggacttcg agcagcgccg gcagctcgat gccgacgcgc gcggcgagct
     6661 cgcccacgat cggcggccgc aggccggcgg cgagcagcac cgtgcgcacc tgctcgaaac
     6721 actcggcgtc ggccgggttc gttcgaggca cgtgcgcggc aaggcgcagg cagaagccgt
     6781 cgcgtaccac ccggccttct tggcgcaacg attgaatcgc tgcgcgcagc agcgaggcgg
     6841 gcgcgcgcat gccgagggcc gcggccagtg ccgattcgct cgggcccagc acgtccggct
     6901 cggcggcgtg cgccgcctcg agcgcgccgg caatgcgttg gcgcagggcc tcccagtgcg
     6961 atggagcgat gccgagca
//
LOCUS       DASVHM010000915         3504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1438216, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000915 DASVHM010000000
VERSION     DASVHM010000915.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3504
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1438216"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..399)
                     /locus_tag="VF308_16830"
     CDS             complement(<1..399)
                     /locus_tag="VF308_16830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012355957.1"
                     /note="necessary for biosynthesis of osmoregulated
                     periplasmic glucans possibly involved in the transfer to
                     the periplasmic space; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis glucosyltransferase H"
                     /protein_id="HEX7438369.1"
                     /translation="MTMPVAHPPLQRSSMPAVPWAGSPLGRPLRRLLGRGPRVPKRRA
                     SDARPLMLRRLVLLVLVLLGAYVGTQAMAEVLPERGAALAERGLLVLFGILFAWISAG
                     FWTGVMGAGVLLFGRGGSPLMRGLASEPLRP"
     gene            complement(396..1928)
                     /locus_tag="VF308_16835"
     CDS             complement(396..1928)
                     /locus_tag="VF308_16835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020202822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0009250 - glucan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis protein G"
                     /protein_id="HEX7438370.1"
                     /translation="MTASSDRFFRPLLAALILLAGASMAQAFGLDDVGARASSRASRP
                     YKAPAVNLPAQLRELDYDAYRDIRFRPEKALWRAEKLPFELMFFHQGRAVPEPVRINI
                     VEPAGERVVAFDPALFDYGKNKFEPQTLSGLGFNGLRVHHAINKPGYKDEVVVFQGAS
                     YFRALGKGQSYGLSARGLAVDTAAPEGEEFPRFVEFWIERPRANATSLTIYALLDSRR
                     VAGAYRFVLTPGVETTMQVTARLYLRDKIGKLGIAPLTSMFSFGENQPGRDDYRPEVH
                     DSDGLSIQLGDGEWIWRPLVNPRRLLVTSFGTSNPRGFGLMQRDRSPASYEDPEALYE
                     RRPSAWIEPVGRWGTGRIELVQIPTPDETNDNIVAFWVPQSLPSPGKPLDIAYRIHWQ
                     SAGTTPAGKGWVVQTRRGRGFGKKVDGEINYVVDFDGPALRSLAASADVEPVIWVDAN
                     AEVRERNLFKNPVSGAWRMTVRIKRNDAAKPVELRGYLKQQQSTLTETWSYILPAEAD
                     RP"
     gene            complement(2118..3416)
                     /gene="aceA"
                     /locus_tag="VF308_16840"
     CDS             complement(2118..3416)
                     /gene="aceA"
                     /locus_tag="VF308_16840"
                     /EC_number="4.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004451 - isocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
                     /protein_id="HEX7438371.1"
                     /translation="MHAPTREEQIRALEQDWAQNPRWKGVRRTYSASDVVRLAGSVRI
                     EHTLARRGAEKLWNLVNTEPFVNTLGALTGNQAMQQVKAGLKAIYLSGWQVAADANLA
                     GSTYPDQSLYPANSVPQVVRRINNALLRAHQIDWSEGHNGTDWLAPIVADAEAGFGGA
                     LNAYELMRGMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREANAKLTAARLAADVM
                     GTPTLVIARTDAEAADLVTSDVDDNDKPFLTGERTIEGFYRTRPGLDQAVSRGLAYSE
                     YADMVWCETGKPDLAYAKAFAEAIHKKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRE
                     LGAMGYKFQFITLAGFHSLNYSMFNLAHGYARNSMTAFVELQEAEFAAADKGFTAVKH
                     QREVGTGYFDAVTTTIERDASTAALKGSTEDEQFFDRKHA"
BASE COUNT          538 a         1140 c         1260 g          566 t
ORIGIN      
        1 cggccgcagc ggctcgctgg cgaggccgcg catgagcggg ctgccaccgc ggccgaagag
       61 aagcacgccc gcgcccatca cgccggtcca gaagccggcc gagatccagg cgaagaggat
      121 gccgaagagg acgagcaggc cacgctcggc cagcgccgcg ccgcgctcgg gcagcacctc
      181 ggccatcgcc tgcgtgccga cgtacgcgcc gaggaggacg aggacgagca acacgagcct
      241 gcgcagcatg agcgggcgcg catcgctggc gcgccgtttc ggaactcgcg gcccacggcc
      301 gagcaggcgg cgcagtggcc ggccgagcgg cgagccggcc cacggcacgg ccggcatcga
      361 gctgcgctgg agcggcgggt gcgccaccgg catcgtcatg gcctgtcggc ctcggcggga
      421 aggatgtagc tccatgtctc ggtcagtgtc gattgctgtt gcttcaggta gccgcgcagc
      481 tcgaccggct tggccgcgtc gttgcgcttg atgcgaacgg tcatgcgcca ggcgccgctg
      541 accgggttct tgaagaggtt gcgctcgcgc acctcggcgt tggcatcgac ccagatcacc
      601 ggctcgacgt cggccgacgc cgcgagcgag cgcagcgccg ggccgtcgaa gtcgacgacg
      661 tagttgatct cgccatcgac cttcttgccg aagccgcggc cgcgccgcgt ctgcacgacc
      721 cagcccttgc cggcgggggt cgtgcccgcg ctctgccagt ggatcctgta cgcgatgtcg
      781 agcggcttgc cgggtgacgg cagcgactgc ggcacccaga aggcgacgat gttgtcgttg
      841 gtctcgtcgg gtgtcgggat ctgcaccagc tcgatgcggc cggtacccca gcggccgacc
      901 ggctcgatcc atgcgctcgg gcgccgctcg tagagcgcct cggggtcctc gtagctcgcc
      961 ggcgagcggt cccgctgcat caggccgaag ccgcgtgggt tgctcgtccc gaacgaagtc
     1021 acgaggagtc ggcgcggatt gacgagcggg cgccagatcc attcgccgtc gccgagctgg
     1081 atcgacaggc cgtcggaatc gtgaacctcg gggcggtagt cgtcgcggcc gggctggttc
     1141 tcgccgaagc tgaacatgct cgtcagcggc gcgatgccga gcttgccgat cttgtcgcgc
     1201 agatagagcc gcgccgtcac ctgcatcgtc gtctccaccc cgggcgtcag gacgaagcgg
     1261 taggcgccgg cgacgcggcg cgagtcgagc agcgcataga tcgtcagcga ggtggcattg
     1321 gcgcgcggcc gttcgatcca gaactcgacg aagcgcggga actcctcgcc ttccggagcg
     1381 gcggtgtcga ccgcgagccc gcgcgccgag aggccgtaag actgcccctt gccgagcgcg
     1441 cgaaagtagc tcgcgccctg gaagacgacg acctcgtcct tatagccggg cttgttgatc
     1501 gcgtggtgga ctcgaaggcc gttgaatccg aggccgctca aggtctgcgg ttcgaacttg
     1561 ttcttgccgt agtcgaacag ggccgggtcg aaggcgacga cccgctcgcc ggccggctcg
     1621 acaatgttga tccgcaccgg ctcggggaca gcgcgcccct ggtggaagaa catcagctcg
     1681 aacggcagct tctcggcgcg ccagagggcc ttctcggggc ggaagcggat gtcgcggtag
     1741 gcgtcgtagt cgagctcgcg caactgcgcc ggcaggttca ccgccggcgc cttgtacggc
     1801 cgggaggcgc ggctgctggc acgcgcgccg acgtcgtcca ggccgaacgc ctgggccatc
     1861 gacgcgccgg cgaggaggat cagcgcggcg aggagcgggc ggaagaatcg atcggaggaa
     1921 gcggtcattt tttctaggtg cccggagcgg ccggagaaac gcgccggtcg ccgccgcgcc
     1981 gacacaaccc gtgcatatgg gggcgattgg ccgaattcca gcccatcgac aggtcccaaa
     2041 agaaaatcgc ccgacggaac cgtcgggcga agcaagagag gggcctgccc cctcggggcc
     2101 gagccgcgtg actgcgatca ggcgtgcttg cggtcgaaga actgctcgtc ctcggtcgag
     2161 cccttgagcg cggcggtcga cgcgtcgcgc tcgatcgtcg tggtcaccgc gtcgaagtaa
     2221 ccggtgccga cctcgcgctg atgcttgacg gcggtgaagc ccttgtccgc cgcggcgaac
     2281 tcggcctcct ggagctcgac gaacgcggtc atgctgttcc tcgcgtagcc gtgggcgagg
     2341 ttgaacatcg agtagttgag gctgtggaag cccgcgagcg tgatgaactg gaacttgtag
     2401 cccatcgcgc cgagctcgcg ctggaacttg gcgatcgtcg cgtcgtcgag gttcttcttc
     2461 cagttgaagc tcggcgagca gttgtacgcg agcagcttgc ccgggaactt cttgtggatc
     2521 gcctcggcga acgccttcgc gtacgcgagg tcgggcttgc cggtctcgca ccagaccatg
     2581 tcggcgtact cggagtaagc gaggccgcgc gagaccgcct ggtcgaggcc gggccgggta
     2641 cggtagaagc cctcgatcgt ccgctcgccg gtgaggaaag gcttgtcgtt gtcgtcgacg
     2701 tcgctcgtga cgaggtcggc ggcttcggcg tcggtgcggg cgatgacgag ggtcggcgtt
     2761 cccatcacgt cggcggcgag gcgcgcggcg gtgagcttgg cgttcgcttc gcgcgtaggc
     2821 acgagcacct tgccacccat gtggccgcac ttcttgactg acgcgagctg gtcctcgaag
     2881 tggactcccg cagcgcccgc ctcgatcatc cccctcatca gctcataggc attgagagcg
     2941 ccgccgaacc ccgcttccgc gtcggcgacg atcggcgcca gccagtcggt gccgttatgc
     3001 ccttccgacc agtcgatctg gtgggcgcgg agcaaggcgt tgttgatgcg ccgcacgacc
     3061 tgcggcaccg agttggccgg gtagaggctc tgatccgggt aggtcgagcc ggcgaggttc
     3121 gcgtcggccg cgacctgcca gccggacagg tagatcgcct tcagcccggc cttgacctgc
     3181 tgcatcgcct ggttgccggt gagtgcgccg agcgtgttga cgaagggctc ggtgttgacg
     3241 agattccaga gcttctcagc gccgcgacgc gccagcgtgt gctcgatgcg aaccgagccg
     3301 gcgaggcgga cgacgtcgct cgccgaatac gtccggcgga cgcccttcca gcgcgggttc
     3361 tgggcccagt cctgctcgag ggcgcgaatc tgttcttctc gggtcggtgc gtgcatgaaa
     3421 tcctcctgaa gggaaaaggc gaatcgttga cgggcagcgt aatcaagcgt gcccgtcagc
     3481 cgggtctttg ttgaatcgaa acat
//
LOCUS       DASVHM010000916         1641 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_213595, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000916 DASVHM010000000
VERSION     DASVHM010000916.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213595"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..861
                     /locus_tag="VF308_16845"
     CDS             <1..861
                     /locus_tag="VF308_16845"
                     /inference="COORDINATES: protein motif:HMM:NF022337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HEX7438372.1"
                     /translation="GRFDAFRPLPREMQSQPWIVALVALALLATALAAWAFRARRPKK
                     PAPLPNEWALTPRPVFSTDERRVYRLLREALPHHIVLSKLPLVRFCQPSDPAQVRFWY
                     DLLGANHVTFAICSANGRVLAAIDLDTDRGNSRRVLQIKQSVLGACRVRYLRCPVDNL
                     PTVAELQLLVPSSAAPARGPQPAPSPPRDLHVARDALASTVATRRAERSALWQDSTLF
                     QDSFFAPDNRLDGFGNSEFSGLPSAQPGRLGSSTQGGGSVPYRSSETAGDDLGGVVVD
                     ASKFSSRSRH"
     gene            988..>1641
                     /locus_tag="VF308_16850"
     CDS             988..>1641
                     /locus_tag="VF308_16850"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HEX7438373.1"
                     /translation="MPASDDSRASATTPYAGLTPTLVLDALDGVGLRGDGRLIQLNSY
                     ENRVFQVFLEDGRVVVAKFYRPGRWSDAQILEEHGFALELAAAEIPVAAPWDLNGPVD
                     SIHAQGVALLGPTLARFDSPAGPYRYSVSERLAGRAPELDDPATLEWIGRFVGRIHAV
                     GARNRFVHRETLDVETFGTANRDRLLASDVIPPDALPGWREVTAEALERVREAFARGG
                     "
BASE COUNT          229 a          619 c          540 g          253 t
ORIGIN      
        1 gggcgcttcg acgcgttccg cccgctcccc cgagaaatgc aaagccaacc gtggatcgtc
       61 gcactcgtcg cattggcgct gctcgccacg gcactcgccg cgtgggcatt tcgggcgcgc
      121 cggccgaaga agccggcacc cctgccgaac gaatgggcgc taacgccgcg gccggtcttc
      181 tcgaccgacg agcggcgggt ctaccggctg ctgcgcgagg cgctgccgca ccacatcgtc
      241 ctgtcgaagt tgccgctggt gcgcttctgc cagccgagcg atccggcgca ggtccgcttc
      301 tggtacgact tgctcggcgc caaccacgtg accttcgcaa tctgcagcgc caacgggcgc
      361 gtgctggcgg cgattgatct cgacaccgac cgcggcaact cccggcgtgt gctgcagatc
      421 aagcagtcgg tgctcggcgc ctgccgggtt cgttatctgc gctgcccggt cgacaacctg
      481 cccaccgtgg cagaactcca actgctcgtc ccgagcagtg ccgccccggc gcgcgggccg
      541 caacccgcgc cgtcgcctcc gcgcgacctg cacgtggcgc gcgacgccct cgcgagcacc
      601 gtggcgacgc ggcgcgccga gcgctccgcg ctgtggcagg actcgaccct gttccaggat
      661 tctttcttcg ctcccgacaa ccggctcgac ggattcggca acagcgagtt ctcgggcttg
      721 ccctcggcgc agcccggccg actgggctca tcgacccagg gtggcggctc ggtgccctat
      781 cgctcgtcgg agacagccgg cgacgatctc ggtggcgtgg tcgtcgacgc ctcgaaattc
      841 tcctcccgct cgcgtcactg agcccggaca cgaggacgtg cccgcgcacg gccttgtgcc
      901 tggcgaagga ctgggcgcct gccagcgccc aggcatgagg cagacgtgtg acagtgcctg
      961 cctaattccg gcgcgtagga tgcgccgatg cctgcttccg acgattcgcg cgccagcgcc
     1021 accaccccgt acgcgggcct gacccccacg ctcgtcctcg acgcgctcga tggcgtcggc
     1081 ctgcgcggcg acggccgcct gatccagctc aactcgtacg agaaccgcgt cttccaggtg
     1141 ttcctcgagg acggccgggt cgtggtcgcg aagttctacc ggcccgggcg ctggagcgac
     1201 gcacagatcc tcgaggaaca cggctttgca ctcgaactcg ccgcggccga aatcccggtc
     1261 gccgcaccct gggacctgaa cggcccggtc gattcgatcc atgcgcaagg cgtcgcgctg
     1321 ctcgggccga ccctcgctcg cttcgactcg ccagccggcc cctaccgcta cagcgtgagc
     1381 gagcgcctcg ccgggcgcgc gcccgaactc gacgacccgg ccacgctcga atggataggg
     1441 cgcttcgtcg ggcgcatcca tgcggtcggc gcccgaaacc ggttcgtgca tcgcgagacc
     1501 ctcgacgtcg agaccttcgg caccgccaac cgggatcgat tgctcgcgtc ggacgtgatc
     1561 ccgcccgacg ccctgcccgg atggcgcgag gtcacggccg aggctctgga gcgcgtgcgc
     1621 gaagcgttcg cgcggggcgg c
//
LOCUS       DASVHM010000917         7993 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_574097, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000917 DASVHM010000000
VERSION     DASVHM010000917.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7993
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_574097"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1854)
                     /gene="tssI"
                     /locus_tag="VF308_16855"
     CDS             complement(<1..1854)
                     /gene="tssI"
                     /locus_tag="VF308_16855"
                     /inference="COORDINATES: protein motif:HMM:TIGR03361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tip protein TssI/VgrG"
                     /protein_id="HEX7438374.1"
                     /translation="MPPPITLKSPLPAADLLFESMTSSAGLSSLGETQLNLLSAKPDL
                     KPEDLLGKAVTVTVQLRGDAKRHFNGFVSRFGAGRHQGRYFAYQATVNPWLWFLTRTS
                     DCRIFQDQTVPDIVKKVFEDHGIAKFEFKLFRTYQKWVYCVQYRESDYNFVARLLEHE
                     GIYWYFEHKDGEHKLVLVDSQSAHDAAKSCESLPYVEQGTETAPDTDCVSDWRFSQEV
                     RSGKVALTSYDFERPSTDLKVDAAKQRKYTMSDYEVFDFDGDYIQKSDGKQSAEDRMD
                     ELQTPFQVLHGSSNAQGIEVGRLLKLTKHPRADQNAQYLITSLHVSAHVDAYESGNAA
                     GDFRCDFSAIPAAQQFRPTRRTPKPFVQGPQTAVVVGPAGEELFTDKYGRVKLHFHWD
                     RYSKKNEKSSCWVRVSHPWAGKNFGVVHVPRIGQEVVVDFLEGDPDQPIITGRVHNAE
                     QMPPWDLPANATQSGILTRSSKGGGYGNANAIRFEDKKGSEQLWIHAEKNQDIEVEND
                     ETHWVGHDRTKTIDHDETTHVKHDRTETVDNNETITIGVNRTEKVGSNEKISIGANRT
                     EDVGADETIKIGANRTENVGANEKITIGANRTESVSANESVTIGASQTIKVG"
     gene            complement(1995..2486)
                     /locus_tag="VF308_16860"
     CDS             complement(1995..2486)
                     /locus_tag="VF308_16860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438375.1"
                     /translation="MRAAVAIAVLISSGPGAAAGQPAPGGSLCTAGEIVYFHCPAAKG
                     RSINLCGAGGDALQYRFGHGKVIELAYPEQASHGTGQFHYAHYFRYQTDRIELRFENQ
                     GVEYVLFDHHEEGRRRAGIRFSADGKEHDVVCTGPIRSKVVALKDIVPCDADSALNLG
                     QCR"
     gene            complement(2483..3163)
                     /locus_tag="VF308_16865"
     CDS             complement(2483..3163)
                     /locus_tag="VF308_16865"
                     /inference="COORDINATES: protein motif:HMM:NF023288.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramidase family protein"
                     /protein_id="HEX7438376.1"
                     /translation="MADADIDLSFLFRACLNPTRGISDSAWAQAAAALDVDVAAIKAV
                     ADVETPGRAFDTYGRPLVLFERHCFSRLTSGRFDLSHARVSAKLPGGYTRSAEYDRLE
                     EAYVLDADAALRSASWGRFQIMGDNFIAAGFSSAPEFVKAMARSEEAQLMAFVHFVRS
                     DKAMTSALHNREWAAFARRYNGKGYKKNLYDTKLADAYSRFSATDKPGAAGKEPAAAA
                     KRPVLRKP"
     gene            complement(3319..6129)
                     /gene="tssH"
                     /locus_tag="VF308_16870"
     CDS             complement(3319..6129)
                     /gene="tssH"
                     /locus_tag="VF308_16870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033104 - type VI protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system ATPase TssH"
                     /protein_id="HEX7438377.1"
                     /translation="MLEISRTALFGKLNPLAYKAIEGATVFCKLRGNAYVELQHWLYQ
                     ILNNQDSDLHRIVKHYGLDAAALTSDLTASLDRLPRGASSVTDLSDWIEDAVERGWVY
                     GSLMFGDTQVRTGYLIVGMLKTTRLKSALLSISKQFDRIKIEDLTDNFARLLAGSPEQ
                     GQRASDGSGDAGEPGEASGAIPPAAMGKQEALKRFTVDLTERARSGEIDPVAGRDEEI
                     RQIIDILMRRRQNNPILTGEAGVGKTAVVEGFALRLARGDVPPQLKDVSLYVLDIGLL
                     QAGASMKGEFENRLRSVIDEVQASPKPIILFIDEAHTLIGAGGAAGTGDAANLLKPAL
                     ARGKLRTIGATTWAEYKKHIEKDPALTRRFQVVQVDEPSEEKAVLMLRGVASILEKHH
                     RVALLDEAITAAVRLSHRYIPGRQLPDKAVSLLDTACARVAVSQHATPAELEDCQRRL
                     EALRTESEIIGREEAIGIDAGERRRRTVASIDEEETRLAMLQKRHEEEKGVVDRILEI
                     RAKLRAPVPAAAAVAAGSEPVPATPAAPGAGAGTAASAAAPLSAVAAGAPAAAVATPV
                     ETGLSDADRKALLAELAPLQTKLAELQGDSPLILPTVDEQAIASVVQDWTGVPVGRMV
                     KNEIESVLKLADTLNQRVIGQKHALDIIARRIQTSRARLDNPNKPIGVFMLCGTSGVG
                     KTETALALAEALYGGEQNIITINMSEFQEAHTVSTLKGSPPGYVGYGEGGVLTEAVRR
                     RPYSVVLLDEVEKAHPDVHELFFQVFDKGWMEDGEGRGIDFKNTIILLTSNVGSELIM
                     NMCRDPELMPEPEGIAKALREPLLKVFPAALLGRLVVVPYYPLSDEMMGNIVRLQLGR
                     IRKRVAANHGIPFEYGDDVVQLIVSRCTEAESGGRVVDAILTNTVLPRISLEYLQRLS
                     NGEALKAVRLAARDGEFEYGFD"
     gene            complement(6122..7237)
                     /gene="tssG"
                     /locus_tag="VF308_16875"
     CDS             complement(6122..7237)
                     /gene="tssG"
                     /locus_tag="VF308_16875"
                     /inference="COORDINATES: protein motif:HMM:TIGR03347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HEX7438378.1"
                     /translation="MNATEDSPSPAPRPERSSAQRDAALAALFRSLSAAPREHDFFAV
                     LRRVESLRSDLPRIGAALRPAQEALRLGQDPELSFAPAALESFAVDARPAPRLGVRFF
                     GLLGPQGPMPLHFTEYVRERLRFRGDATLARFLDVFHHRLLALFYRAWAQAQPTVHHD
                     RPGEDRFGAWLGATFGAEGAGAARRSLPDNARLFQAGLLGARSRHPEGLGKLLKQYFR
                     VPVRIEPHALQWLDLAAEDRSRLGYSRSRPERSGGMAPQLGVSATSGSKWRDRQYKFR
                     IALGPLTLARYHEFLPGGLAWSRLREWVQHYAGLDLRWDVELTLAGGEVPEPRLGRAT
                     RLGVSTWIGRVAGPRDRNDLRLRPDTSFLLRHGVPHA"
     gene            complement(7234..>7993)
                     /locus_tag="VF308_16880"
     CDS             complement(7234..>7993)
                     /locus_tag="VF308_16880"
                     /inference="COORDINATES: protein motif:HMM:NF017733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HEX7438379.1"
                     /translation="YHDETPPADGEAHGYYTVRREPRLLSSRQKQHGARSSYIGEEVF
                     LSLVDPNHAPYRDDVRQLSVTAWATNRDLPTLLPHAGGDGAATWRLESPGPVARVDLL
                     RGPTRPVTRRPVGQLGWSLVNHLTLNHLALVGETPQHAAAALRTMLGLYAPPEDSGWT
                     RQVEGVHGLEVKSVVRRLPFKGPLTFGTGIEIVLELDELAFQGTSAFLFASVLERFFA
                     RHAAINSFTQLTLKTPQRGEVMRWPPRIGMREAV"
BASE COUNT         1156 a         2682 c         2818 g         1337 t
ORIGIN      
        1 gccgaccttg atcgtctgac tggcgccgat ggtgacgctc tcgttcgccg agaccgactc
       61 ggtgcggttc gcgccgatcg tgatcttctc gttcgcgccg acgttctcgg tgcggttcgc
      121 gccgatcttg atcgtctcgt cggcaccgac gtcttcggtg cgattggcgc cgatcgagat
      181 cttctcgttg ctgccgacct tctcggtccg gttcacgccg atcgtgatcg tctcgttgtt
      241 gtcgaccgtc tcggtccggt catgcttgac gtgcgtcgtc tcgtcgtggt cgatcgtctt
      301 ggtccggtca tgcccgaccc agtgcgtctc gtcgttctcg acctcgatgt cctggttctt
      361 ctcggcgtgg atccagagct gctcgctgcc cttcttgtcc tcgaaccgga tcgcgttggc
      421 gttgccgtac ccgccgccct tgctcgagcg cgtcaggatt cccgactgcg tcgcgttcgc
      481 cggcaggtcc cacggcggca tctgctcggc gttgtggacg cggccggtga tgatcggctg
      541 atcggggtcg ccctcgagaa agtcgacgac gacctcctgg ccgatgcgcg gcacgtgcac
      601 gacaccgaag ttcttgcccg cccacggatg cgagacgcgc acccagcatg agctcttctc
      661 gttcttcttg ctgtagcggt cccagtggaa gtggagcttg acgcggccgt acttgtcggt
      721 gaagagctct tcgccggcgg ggccgacgac gaccgccgtc tgcggcccct gcacgaacgg
      781 cttgggcgtg cgacgcgtcg gccggaactg ctgcgccgcc gggatggccg agaagtcgca
      841 acggaagtcg cccgctgcat tgcccgactc gtaggcgtcg acgtgggcgc tgacgtgcag
      901 cgacgtgatc aggtactgcg cgttctggtc ggcgcgcggg tgcttggtga gcttgagcag
      961 ccggcccacc tcgatgccct gcgcgttcga cgaaccgtgc agcacctgga acggcgtctg
     1021 caactcgtcc atgcggtctt cggccgactg cttgccatcg ctcttctgga tgtagtcacc
     1081 gtcgaaatcg aagacctcgt agtccgacat cgtgtacttg cgctgctttg ccgcgtccac
     1141 cttgaggtcg gtcgacggcc gctcgaagtc gtagctcgtg agcgccacct tgcccgagcg
     1201 cacctcctgc gagaagcgcc agtcggagac gcagtcggtg tcgggcgcgg tctcggtgcc
     1261 ctgctcgacg tagggcagcg attcgcacga tttcgcggcg tcgtgcgcgc tctgcgaatc
     1321 gacgaggacg agcttgtgct cgccgtcctt gtgctcaaag taccagtaga tgccctcgtg
     1381 ctcgagcagc cgcgcgacga agttgtagtc gctctcgcga tactgcacgc aatacaccca
     1441 cttttgatac gtgcggaaga gcttgaactc gaacttggcg atgccgtggt cctcgaacac
     1501 cttcttgacg atgtcgggaa cggtctggtc ctggaagatc cggcagtcgg acgtgcgcgt
     1561 caggaaccag agccagggat tgaccgtcgc ctggtaggcg aagtagcggc cctggtgacg
     1621 ccccgcgccg aagcgcgaga cgaagccgtt gaagtggcgc ttggcgtcgc cgcgcaactg
     1681 caccgtcacg gtcaccgcct tgccgagcag gtcttcgggc ttcaggtcgg gcttggcgct
     1741 cagcaggttg agctgcgtct cgccgagcga gctcaggccg gctgacgacg tcatcgactc
     1801 gaacagcaag tcggcggcgg gaagtggtga cttgagcgtg atgggcggcg gcatgtcctg
     1861 ccttcaccgt tcggtggcag caacgcggat ccttcggcct cggcccgggg gcgtaaagcg
     1921 accaaagtca tccgcgacct gccgtccggc catcctccgg tcgctcacga gcgagcgggc
     1981 gactccgtcc gagctcatcg gcattggccc aggttgagcg cgctgtcggc atcgcatgga
     2041 acgatgtcct tcaacgcgac gaccttactg cggatcgggc cggtgcagac gacgtcgtgc
     2101 tccttgccat cagcgctgaa gcgaatgccg gcccgccggc gcccttcctc gtggtggtcg
     2161 aacaggacgt attcgacgcc ctggttttcg aagcgcagct cgatccgatc ggtctggtag
     2221 cggaaatagt gggcgtagtg aaattgaccg gtgccatggc tggcttgctc gggatacgcg
     2281 agctcgatga ccttgccgtg gccgaaccgg tactggagcg cgtcaccgcc cgctccgcac
     2341 aggttgatcg atcggccctt cgcagcgggg cagtggaaat agacgatttc gccggcggtg
     2401 cacaaggagc cacccggcgc cggctggccg gcggccgcgc ctggccccga agagatcaac
     2461 acggcgatcg cgacagcggc cctcatggct ttcgcagtac cggtcgcttc gcagccgcgg
     2521 ccggttcctt gccggccgcg cccggcttgt ctgtggcact gaagcgcgag taggcatcgg
     2581 ccagcttcgt gtcgtataga ttcttcttgt accccttgcc gttgtagcgc cgcgcgaacg
     2641 ccgcccactc ccggttgtgc aaggcgctcg tcatcgcctt gtcgctgcgg acgaaatgga
     2701 cgaaggccat tagctgtgct tcttccgagc gagccatcgc cttgacgaac tcgggtgccg
     2761 aggaaaagcc cgcggcgatg aagttgtcgc ccatgatctg aaagcgtccc cacgacgccg
     2821 atcgcagcgc ggcgtccgcg tcgagaacgt aagcctcctc gagcctgtcg tactctgcgg
     2881 accgcgtgta gccgccgggc agctttgcgg acacgcgggc gtggctcaga tcgaagcggc
     2941 ccgacgtcaa acgactgaaa cagtgacgct cgaacaggac gagcggtcgc ccgtaggtgt
     3001 cgaaagccct acccggcgtc tcgacgtcgg cgaccgcctt gatcgcagcg acatcgacgt
     3061 cgagtgccgc cgcggcctgc gcccacgccg agtcgctgat cccccgggtg gggttgagac
     3121 aggcgcgaaa cagaaagctc aggtcgatgt cggcgtcggc caccaacggc gcaccggcgc
     3181 gaaagatcga tgaagccacg cagaccggcc ccggcgccgg aaggcgccag agcgcgagcg
     3241 tgccgtcgag cagcgaccag ggctgctgct cgccgcagat cggcccggga actcggtagc
     3301 cggccatcgt tgccgcgctc agtcgaaccc gtactcgaac tcgccgtctc tggccgcgag
     3361 ccgcaccgcc ttcagcgcct cgccgttgct gagccgctgc aggtactcga gcgagatccg
     3421 aggcagcacg gtgttggtga ggatcgcgtc gacgacccgc ccgcccgact cggcctcggt
     3481 gcagcgcgag acgatcagct ggacgacgtc gtcgccgtac tcgaacggaa tgccgtggtt
     3541 ggcggcgacg cgcttcctga tgcggccgag ctggaggcgg acgatgttgc ccatcatctc
     3601 gtcggagaga gggtagtacg gcacgaccac caggcggccg agcagcgcgg cagggaacac
     3661 cttcaggagc ggctcgcgca gcgccttggc gatcccctcg ggctcgggca tcagctcggg
     3721 atcgcggcac atgttcatga tcagctcgct gccgacgttg ctcgtcagca ggatgatcgt
     3781 gttcttgaag tcgatccccc ggccctcgcc gtcttccatc cagcccttgt cgaagacctg
     3841 gaagaagagc tcgtggacgt cggggtgcgc cttctcgacc tcgtcgagaa ggacgacgct
     3901 gtacggccgc cgccgcaccg cctcggtcag cacgccgccc tcgccgtagc cgacgtagcc
     3961 gggcggcgag cccttgagcg tcgagacggt gtgcgcctcc tggaactcgc tcatgttgat
     4021 cgtgatgatg ttctgctcgc cgccgtagag cgcctcggcg agcgcgagcg cggtctcggt
     4081 cttgccgacg cccgacgtgc cgcagagcat gaagacgccg atcggcttgt tcgggttgtc
     4141 gaggcgcgcg cgcgaggtct ggatgcgccg ggcgatgatg tcgagcgcgt gcttctggcc
     4201 gatgacgcgc tggttcagcg tgtcggcgag cttgagcacc gactcgattt cgttcttgac
     4261 catccggccg accggaacgc cggtccagtc ctggacgacg ctggcgatgg cctgctcgtc
     4321 gaccgtcggc aggatcagcg gcgaatcgcc ctgcagctcg gcgagcttgg tctgcagcgg
     4381 cgcgagctcg gcgaggagcg ccttgcggtc ggcgtcgctg aggccggttt cgaccggcgt
     4441 cgccacggcc gccgcgggtg cgccggcggc gacggccgag agcggcgcgg cagcggaagc
     4501 ggcagtgcca gcaccagcgc caggcgctgc aggcgtcgcc ggcaccggct cggaccctgc
     4561 cgccaccgcg gccgccgcag gcacgggcgc cctcagcttg gcccggatct cgaggatgcg
     4621 atcgacgacg cccttctctt cctcgtgccg cttctggagc atcgcgaggc gcgtctcttc
     4681 ctcgtcgatc gaggcgaccg tacgacggcg ccgctcgccg gcgtcgatgc cgatcgcctc
     4741 ttcgcggccg atgatctcgc tctcggtgcg aagcgcctcg aggcggcgct ggcagtcctc
     4801 gagctcggcg ggggtcgcat gctggctgac ggcgacgcgc gcgcacgccg tgtcgagcag
     4861 gctcaccgcc ttgtcgggga gctggcgtcc ggggatgtag cggtgcgaca gccggaccgc
     4921 cgccgtgatc gcctcgtcga gcagggcgac gcggtgatgc ttctcgagga tcgaagcgac
     4981 gccacgcagc atcagcaccg ccttctcctc gctcggctcg tcgacctgga cgacctggaa
     5041 gcgccgcgtc agcgccggat ccttctcgat gtgcttcttg tattcggccc acgtcgtcgc
     5101 gccgatcgtg cgcagcttgc cgcgcgcgag cgccggcttg agcaggttcg cggcgtcgcc
     5161 ggtgccggcc gcgccgccgg cgccgatcag cgtgtgcgcc tcgtcgatga acaggatgat
     5221 cggcttcggc gacgcctgca cttcgtcgat caccgagcgc aggcgattct cgaactcgcc
     5281 cttcatgctc gcgcccgcct gcagcaggcc gatgtcgagg acgtagagcg agacgtcctt
     5341 cagctgcggc ggcacgtcgc cgcgcgccag gcgcagcgcg aagccctcga ccaccgcggt
     5401 cttgccgacg cccgcctcgc cggtcaggat cggattgttc tggcgccgcc gcatcaggat
     5461 gtcgatgatc tggcggatct cctcgtcgcg gcccgcgacc gggtcgatct cgccgctgcg
     5521 cgcgcgctcg gtgaggtcga cggtgaagcg cttgagcgcc tcctgcttgc ccatcgccgc
     5581 gggcgggatc gcgccgctcg cctcgcccgg ctcgccggcg tcgccgctgc cgtcgctggc
     5641 gcgctggccc tgctcgggcg agccggcgag cagcctggcg aagttgtcgg tgaggtcctc
     5701 gatcttgatg cgatcgaact gcttcgagat cgacagcagc gcgctcttca ggcgcgtcgt
     5761 cttgagcatg ccgacgatca ggtaaccggt gcgcacctgc gtgtcgccga acatcagcga
     5821 gccgtagacc cagccgcgct cgacggcgtc ctcgatccag tcggagaggt cggtcaccga
     5881 gctcgcgccg cgcggcaggc ggtcgagcga tgcggtgaga tcgctcgtca gcgccgcggc
     5941 gtcgaggccg tagtgcttga cgatccggtg caggtcggag tcctggttgt tgaggatctg
     6001 gtagagccag tgctgcagct cgacgtaggc gttgccgcgc agcttgcaga agacggtggc
     6061 gccttcgatc gccttgtagg cgagcgggtt gagcttgccg aagagagcgg tgcgcgagat
     6121 ctcaagcatg gggaactccg tggcgaagca ggaacgacgt gtcgggccgc aagcgaaggt
     6181 cgttccggtc gcgcgggccg gcaacgcggc cgatccaggt gctgacgccg aggcgagtcg
     6241 cgcggccgag gcgcggctcg ggcacctcgc cgccggcgag cgtgagctcg acgtcccagc
     6301 gcaggtcgag cccggcgtag tgctgcaccc attcgcgcag gcgcgaccag gccaggccgc
     6361 cgggaaggaa ctcgtgatag cgcgcgagcg tgagcgggcc aagggcgatg cggaacttgt
     6421 actgccggtc gcgccacttg ctgccgctcg tcgccgagac gccgagctgc ggcgccatgc
     6481 cgccgctgcg ctcgggccgg ctgcgcgaat agccgagccg gctgcggtct tcggcggcga
     6541 ggtcgagcca ctgcaaggcg tgcggctcga tgcggaccgg cacgcgaaag tactgcttca
     6601 gcagcttgcc gaggccttcc ggatggcggc tgcgcgcgcc gagcaggccg gcctggaaga
     6661 gccgggcgtt gtcgggcaac gaccgccgcg ccgcgcctgc gccttcggca ccgaaggtcg
     6721 cgccgagcca ggcgccgaag cggtcttcgc cgggccgatc gtggtggacg gtcggctgcg
     6781 cctgggccca ggcgcgatag aaaagcgcga gcaggcggtg atggaagacg tcgaggaagc
     6841 gcgcgagcgt cgcgtcaccg cgaaagcgga gccgctcgcg aacgtactcg gtgaagtgca
     6901 agggcatcgg cccctgcggg ccgagcaggc cgaagaagcg cacgcccagg cgtggcgccg
     6961 gccgcgcgtc gaccgcgaag ctctcgagcg cggcaggggc gaaggagagc tcgggatcct
     7021 ggccgagccg cagcgcttcc tgcgccggcc gcagcgccgc gccgatgcgc ggcagatcgg
     7081 agcgcagcga ctcgacgcgg cgcagcacgg cgaagaaatc gtgttcgcgc ggcgccgcgc
     7141 tcaagctgcg aaagagcgcc gccagggcag cgtcgcgctg cgccgagctg cgctcggggc
     7201 gcggcgcggg tgacgggctg tcctcggtcg cgttcacacc gcctcccgca tgccgatgcg
     7261 cggcggccag cgcatgacct cgccgcgctg cggcgtcttc agcgtcagct gcgtgaagct
     7321 gttgatcgcc gcatggcggg cgaagaagcg ctcgaggacg ctcgcgaaca ggaacgcgct
     7381 cgtgccctgg aacgcgagct cgtcgagctc gaggacgatc tcgatgccgg tgccgaaggt
     7441 gagcgggccc ttgaacggca ggcgccgaac gacgctcttc acttcgaggc cgtgcacgcc
     7501 ctcgacctga cgcgtccagc cgctgtcctc gggcggcgcg tagaggccga gcatcgtccg
     7561 caaggcggcc gcggcatgct gcggcgtctc gccgacgagt gcgaggtggt tgagcgtgag
     7621 gtgattgacg aggctccagc cgagctgccc gaccggccgc cgcgtcacgg gccgggtcgg
     7681 gccgcgcagc agatcgacgc gcgcgaccgg tcccggcgat tcgagccgcc acgtcgcggc
     7741 gccgtcgccg ccggcgtgcg gcaacagcgt cggcaggtcg cggttggtcg cccacgcggt
     7801 gaccgagagc tggcggacgt cgtctcgata cggcgcgtgg ttcggatcga ccagcgagag
     7861 gaacacttcc tcgccgatgt acgacgacct cgcgccgtgc tgcttctggc gcgacgacag
     7921 gaggcgcggc tcgcgccgca ccgtgtagta gccgtgcgcc tcgccgtcgg cgggtggcgt
     7981 ctcgtcgtga tag
//
LOCUS       DASVHM010000918         3015 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_284951, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000918 DASVHM010000000
VERSION     DASVHM010000918.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3015
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284951"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1281
                     /gene="aceK"
                     /locus_tag="VF308_16885"
     CDS             <1..1281
                     /gene="aceK"
                     /locus_tag="VF308_16885"
                     /EC_number="2.7.11.5"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008772 - [isocitrate dehydrogenase
                     (NADP+)] kinase activity [Evidence IEA];
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional isocitrate dehydrogenase
                     kinase/phosphatase"
                     /protein_id="HEX7438380.1"
                     /translation="NFQLERAFDDLERDVDAVLGAFAVELGQFPMRANFQVQVLASLF
                     YRNKGAYLVGKVINGFHETPFALPILHDANGKLVIDTVLFGEDDLLLLFSFARAYFMV
                     AMEVPSAYVQFLRSMMPRKPRSEIYSALGLQKQGKNTFYRDFLMHMRHSSDKFRTAPG
                     IKGMVMLVFDLPSFPYVFKVIKDDFPAQKETTREIIKSKYLLVKQHDRVGRMADTLEY
                     SNVAFPRVRFEDELVAELRQFCPSLLEEDGDALVIRHVYIERRMIPLNIYLHEASPAQ
                     IEHAVIEYGNAIKDLVRANIFPGDMLFKNFGVTRHGKVVFYDYDEIEYLTDCNFRKVP
                     EPRNPEEEMSAEVWYTVGPKDVFPETFGPFLLGNPAVRDVFMQHHADLLDAAFWQAHK
                     ERILAGYVHDVFPYEVHRRFEHQRRSAAPALSST"
     gene            1303..2481
                     /locus_tag="VF308_16890"
     CDS             1303..2481
                     /locus_tag="VF308_16890"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006386959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEX7438381.1"
                     /translation="MTDSIVIVSAARTPIGGLLGDFSALAAHQLGSVAIKAAVERAGI
                     TGDAVSEVLMGNCLMAGQGQAPARQAALGAGLPQSAGAVTLSKMCGSGMRAMMFAHDM
                     LKAGSAEILVAGGMESMTNAPHLMFARKGVRYGAAQMYDHMALDGLEDAYERGRAMGV
                     FAEECVAKYNFTREAMDRFAIASTERAKKANEDGSFAWETAPVSVPGKGGQTVIKFDE
                     QPFKAKLDKIPGLKPAFKKDGTITAATSSSISDGAAALVLMRESTAARLGCKPVARIV
                     AHSVHAQAPNWFTTAPVGAIQKVLKKSGWTAQDVDLWEVNEAFAAVTMAAMTEFALPH
                     EIVNLHGGAVALGHPIGASGARIVVTLLGALRKYGKKKGVAALCIGGGEATALAVELV
                     "
     gene            2522..>3015
                     /locus_tag="VF308_16895"
     CDS             2522..>3015
                     /locus_tag="VF308_16895"
                     /inference="COORDINATES: protein motif:HMM:NF013933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEX7438382.1"
                     /translation="MNRRSGIVLGTHDLWLFAATVFVLNATPGVDLMFTLARTLQHGV
                     RGGLCAALGVSSGCVLHALTAAFGLAALLAASAAAFAVVKWIGAAYLLWLAVGMLRAA
                     AKRAAPAAASPTGASPPGGWQLFRQGLLTNALNPKVALFFLALLPQFIDGAAPHKTLA
                     FLFLG"
BASE COUNT          496 a         1031 c          987 g          501 t
ORIGIN      
        1 aacttccagc tcgagcgggc gttcgacgac ttggagcgcg acgtcgacgc ggtgctcggc
       61 gcgttcgcgg tcgagctcgg gcaattcccc atgcgcgcca acttccaggt gcaggtgctg
      121 gcgtcgttgt tctatcggaa caagggcgcc tacttggtcg gcaaggttat caacgggttc
      181 cacgagaccc cgttcgcgct gccgatcctg cacgacgcga acggcaagct cgtcatcgac
      241 accgtgctct tcggcgagga cgacctgctg ctgctgttca gcttcgcgcg cgcctacttc
      301 atggtcgcga tggaggtgcc ctcggcctac gtgcagttcc tgcgctcgat gatgccgagg
      361 aagccccgtt ccgagatcta cagcgcgctc ggcctgcaga agcagggcaa gaacaccttc
      421 tatcgcgact tcctgatgca catgcggcac tcgtccgaca agttccgcac cgcacccggc
      481 atcaagggca tggtgatgct ggtgttcgat ctgccgagct tcccatacgt gttcaaggtc
      541 atcaaggacg acttcccggc gcagaaggaa accacgcgcg agatcatcaa gtccaagtac
      601 cttctcgtga agcagcacga ccgggtcggg cgcatggccg acacgctcga atacagcaat
      661 gtcgcctttc cgcgcgtgcg cttcgaggac gagctcgtcg ccgaactgcg ccagttctgc
      721 ccgagcctgc tcgaggaaga cggcgatgcc ctcgtgatcc gccacgtcta catcgagcgc
      781 cgcatgatcc cgctcaacat ctacctgcac gaagcctcgc cggcgcagat cgagcacgcg
      841 gtgatcgaat acggcaacgc catcaaggac ctggtgcgcg ccaacatctt ccccggcgac
      901 atgctgttca agaacttcgg cgtcacccgt cacggcaagg tcgtgttcta cgattacgac
      961 gagatcgaat acctgaccga ctgcaacttc cgcaaggtgc ccgagccgcg caacccggaa
     1021 gaggagatgt cggccgaggt ctggtacacg gtcggcccga aggacgtatt cccggaaacc
     1081 ttcgggccgt tcctgctcgg caacccggcc gtgcgcgacg tcttcatgca gcaccacgcc
     1141 gacctgctcg acgccgcgtt ctggcaagcg cacaaggagc gcatcctcgc cggctatgtg
     1201 catgatgtat ttccgtacga ggtgcaccgg cgcttcgaac accagcgccg gagtgcagcg
     1261 ccggcattgt cttcaacctg attcattccc gaggaccccg tcatgaccga ttccatcgtc
     1321 atcgtttccg ccgcccgcac gccgatcggc ggcctgctcg gcgatttcag cgcgctcgcc
     1381 gcgcaccagc tcggcagcgt cgccatcaag gccgctgtcg agcgcgccgg catcaccggc
     1441 gatgccgtca gcgaagtcct gatgggcaac tgcctgatgg ccggccaggg ccaggcgccg
     1501 gcgcgccagg ccgcgctcgg cgccgggctc ccgcaatcgg ccggcgccgt cacgctctcg
     1561 aagatgtgcg gatcgggcat gcgcgcgatg atgttcgcgc acgacatgct caaggccggg
     1621 agcgccgaga tcctcgtcgc cggcggcatg gaaagcatga ccaacgcgcc gcacctgatg
     1681 ttcgcgagga agggcgtgcg ctacggcgcc gcgcagatgt acgaccacat ggcgctcgac
     1741 ggcctggaag acgcctacga gcgcggccgc gcgatgggcg tgtttgccga ggagtgcgtc
     1801 gccaagtaca acttcacccg agaggcgatg gaccggttcg cgatcgcctc gaccgagcgc
     1861 gcgaagaagg ccaacgagga cggcagcttc gcttgggaga cggcgccggt ctcggtgccc
     1921 ggcaagggcg gccagaccgt catcaagttc gacgagcagc cgttcaaggc caagctcgac
     1981 aagatcccgg ggctgaagcc cgcgttcaag aaagacggca cgatcaccgc cgcgacctcg
     2041 tcgagcattt ccgacggcgc cgcggcgctg gtgctgatgc gcgagtcgac ggcggcgcgg
     2101 ctcggctgca aaccggtcgc gcggatcgtc gcccattcgg tccatgcaca ggctcccaac
     2161 tggttcacga cggcgccggt cggcgcgatc cagaaggtgt tgaagaaatc cggatggacg
     2221 gcccaggacg tcgacctctg ggaagtcaac gaggctttcg ccgcggtgac gatggcggcg
     2281 atgaccgagt tcgctctgcc gcacgagatc gtcaacctgc acggcggcgc ggtagcgctc
     2341 ggccacccga tcggggcgag cggcgcccgc atcgtcgtca ccttgctcgg cgcgctgcgc
     2401 aagtacggca agaagaaggg cgtcgcggcg ctgtgcatcg gcggcggcga agcgacggcg
     2461 ctcgccgtcg agctggtgtg atgcgtcgca ttcgggatcg ggcggtcgcg agcgctcgcg
     2521 cttgaaccgg cgctccggca tcgtgctcgg cacccacgac ctctggctct tcgccgcgac
     2581 ggtgttcgtg ctcaacgcca cgccgggcgt cgacctgatg ttcacgctgg cgcgcacgct
     2641 gcagcacggt gtgcgtggcg gcctctgcgc cgcgttgggc gtcagcagcg gctgcgtgct
     2701 gcacgccctc accgcggctt tcggcctggc ggcgctgctc gccgcgtccg ccgcagcctt
     2761 cgccgtggtc aagtggatcg gcgcggctta cctgttgtgg ctggctgtcg ggatgttgcg
     2821 cgccgccgca aagcgcgccg cgccggccgc cgcgtcgccg accggcgcga gtccgcccgg
     2881 cggctggcag ctttttcgcc aggggctgct cacgaacgcg ctgaacccga aggtggcgct
     2941 gttcttcctc gcgctcctgc cgcagttcat cgacggcgcc gcgccgcaca agacgcttgc
     3001 gttcctgttc ctcgg
//
LOCUS       DASVHM010000919         3740 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1438416, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000919 DASVHM010000000
VERSION     DASVHM010000919.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3740
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1438416"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VF308_16900"
     CDS             complement(<1..380)
                     /locus_tag="VF308_16900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011831020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEX7438383.1"
                     /translation="MSRKTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTCFWKGMELNFPEHRINIIDTPGHVDFTIEVERS
                     MRVLDGAVMVYDSVGGVQPQSETV"
     gene            complement(461..931)
                     /gene="rpsG"
                     /locus_tag="VF308_16905"
     CDS             complement(461..931)
                     /gene="rpsG"
                     /locus_tag="VF308_16905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008649176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEX7438384.1"
                     /translation="MPRRREVPKRDILPDPKFGSVDLSKFMNVIMESGKKAVAERIIY
                     GALEQVEKKSGKDPLEIFVVALNNIKPMVEVKSRRVGGANYQVPVEVRPVRRVALAMR
                     WLKESARKRGEKSMAQRLANELLEAVEGRGGAMKKRDEVHRMAEANKAFSHFRF"
     gene            complement(1108..1485)
                     /gene="rpsL"
                     /locus_tag="VF308_16910"
     CDS             complement(1108..1485)
                     /gene="rpsL"
                     /locus_tag="VF308_16910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEX7438385.1"
                     /translation="MPTINQLVRHGRATEITKSKSPALQGGPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTNGFEIISYIGGEGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGSL
                     DLQGVKDRKQSRSKYGAKRPKKA"
     gene            complement(1749..2804)
                     /locus_tag="VF308_16915"
     CDS             complement(1749..2804)
                     /locus_tag="VF308_16915"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018313257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX7438386.1"
                     /translation="MALDEAKLNAFMGNFVHDFGAALHAATIVVGDQLGLYKELAKGP
                     SSVEDLARATETDARYLREWLSAQAASGYVEYDPATDRFSMTEEQAFALAEEGSPAFI
                     PGAFQIVVAQFKAIPKIAKVMRTGLGLGWHEHDTALFNGTERFFRPGYLANLVSQWLP
                     ALDGVDDRLRAGARVADVGCGHGASTLIMAQAYPESHFVGFDYHAPSIEHARRAAHEA
                     GVASRVRFEVASAKTFPGTDYDLVAVFDCLHDMGDPVGAAEHVRRSLRPDGAWLIVEP
                     FANERLEDNLNPVGRIFYAASTFICTPASRSQEVGLCLGAQAGEARIRDVVAKGGFSR
                     FRRAHQTPFNLIYEARP"
     gene            2770..2940
                     /locus_tag="VF308_16920"
     CDS             2770..2940
                     /locus_tag="VF308_16920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438387.1"
                     /translation="MKAFSFASSNAMVCSPVDRHEDARAKLRSRLIVGPAPARPQYAA
                     MRTRLAIRRAAA"
     gene            2969..>3740
                     /locus_tag="VF308_16925"
     CDS             2969..>3740
                     /locus_tag="VF308_16925"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX7438388.1"
                     /translation="MPCTRCDADNPPGARFCGACGASLEAACAHCGSVLLAGQRFCTG
                     CGADVAGPAKAAPDDGERRHATVMFSDLSGYTALNETLDPEEVEAIMGRIKAEATAVI
                     ESHGGTVNQFVGDEIMALFGVPLARRDDPRRAVRAALELHRVVDRLVAGLKPGHGAAL
                     TMHTGINTGLVVARRSDARAGDYALTGDTVNTAARLRSLATPGEIVVSAETWQQVSEY
                     FEAEAGAPVEVKGKERPLVPYRIRTERAAPASGDAALVG"
BASE COUNT          594 a         1278 c         1234 g          634 t
ORIGIN      
        1 cagacggttt ccgactgcgg ctgcacaccg ccgaccgagt catagaccat gaccgcgccg
       61 tcgagcacgc gcatgctgcg ctcgacctcg atcgtgaagt cgacgtgacc gggcgtgtcg
      121 atgatgttga tgcggtgctc ggggaaattg agctccatgc ccttccagaa gcaggtcgtc
      181 gccgccgaag tgatcgtgat gccgcgctcc tgttcctgct ccatccagtc catcgtcgcg
      241 gcgccgtcgt gcacttcacc gatcttgtgg ttgacgccgg tgtagaacag gatgcgttcg
      301 gtcgtcgtcg tcttgccggc gtcgatgtgg gccgagatac cgatatttcg gtagcgctcg
      361 atgggtgtct tgcgggacat ggaattgctc caaatacggg acgccgctcg cgggttggat
      421 caacccgtcg aacggtctgg aaacctgcgc tggccggcgc tcagaaccgg aagtgcgaga
      481 aggccttgtt ggcctccgcc atgcggtgaa cttcgtcgcg cttcttcatc gcaccgccgc
      541 ggccttcgac ggcctcgagc agttcgttgg caaggcgctg cgccatcgac ttctcgccgc
      601 gcttcctggc cgattccttg agccagcgca tcgccagcgc gacccggcgc accgggcgca
      661 cttcgaccgg cacctggtaa ttcgcaccgc cgacgcggcg cgacttcact tcgaccatcg
      721 gcttgatgtt gttcagcgcg acgacgaaga tttcgagcgg atccttgccc gacttcttct
      781 cgacctgctc gagcgcaccg tagatgatgc gttcggccac ggccttcttg ccggactcca
      841 tgatcacgtt catgaacttg gacagatcga ccgagccgaa tttcggatcg gggaggatgt
      901 cccgcttggg gacttcacga cgacgaggca tttctcaacc tttcagtttc agttggtgcg
      961 ggccattgcc cgcaccgcgg aggtcacctg ggccgtgaac ggccctcgta cctgccactt
     1021 actcggcggc acccgacgag cgccaccgcg acaaatccga cccggcttgc gccggaccgg
     1081 acgatttaga gccgttcccg ccgggaatca ggccttcttc gggcgcttcg cgccgtactt
     1141 cgagcgcgac tgcttgcgat ctttcacgcc ttgcaggtcg agcgagccgc gcacgatgtg
     1201 atagcgcacg cccggcaaat ccttgacgcg gccgccgcgc accaggacca cgctgtgctc
     1261 ctgcaggttg tggccctcgc cgccgatgta cgagatgatc tcgaacccgt tggtcaggcg
     1321 caccttggcg accttgcgca aagccgaatt cggctttttc ggcgtggtcg tgtacacgcg
     1381 cgtgcacacg ccgcggcgtt gcgggccgcc ctgcagcgcg ggcgacttgg acttcgtgat
     1441 ctcggtcgcg cgaccgtggc gcacgagctg gttgatggtt ggcataggtg gcttgttccg
     1501 tgtgattcgc tcggcttgcg gcgggtccgg gcgatccagg aagggcgtcg aggcctgcgc
     1561 gcagcagcct ccgtagaagc gggtgcccgg gccgcccgtc aaagagcgca gcagaatctg
     1621 ccgaaaagcc ttccattata ttggcgctta cccccgcccg caagtcgggg ctgatcgggg
     1681 cacgctcgga cgccccgatc actctcccga cgggaggtga tcggatcccg gggccaaacc
     1741 gggtcgtctc agggccgcgc ctcgtagatg aggttgaacg gcgtctggtg ggcgcgccgg
     1801 aaccggctga aaccgccctt cgcgacgacg tcgcgaatcc gcgcttcgcc ggcctgcgcg
     1861 ccgagacaaa gtcccacctc ctgggaccgc gaagccggcg tgcagatgaa agtcgaggcg
     1921 gcgtagaaga tgcgaccgac cggattcaga ttgtcttcga ggcgctcgtt cgcgaacggc
     1981 tcgacgatga gccaggcgcc gtccgggcgc aggctccggc gcacgtgttc ggccgcgccg
     2041 accgggtcgc ccatgtcgtg caggcagtcg aacactgcga ccaggtcgta gtcggtgccc
     2101 gggaaggtct tggcgctggc cacttcgaag cgcacccgcg acgccacacc cgcctcgtgc
     2161 gcagcgcggc gcgcgtgctc gatcgacggc gcgtggtagt cgaatccgac gaagtgcgac
     2221 tcgggatagg cctgcgccat gatcagggtc gacgcaccgt gcccgcagcc gacatcggcc
     2281 acacgggcgc cggcgcgcag ccggtcatcc acgccatcga gcgccggcaa ccactggctc
     2341 accaggttgg ccaggtaacc cggccggaag aatcgctcag tgccgttgaa aagcgcggtg
     2401 tcgtgttcgt gccagcccag accaagcccg gtgcgcatca cctttgcaat cttcgggatc
     2461 gccttgaact gggcgaccac gatctggaag gcgccaggaa tgaaggccgg gctcccctcc
     2521 tcggccagtg cgaacgcctg ctcctctgtc atgctgaagc ggtcggtggc ggggtcgtac
     2581 tcgacatagc cgctggcggc ctgggccgag agccactcac gcaggtagcg cgcgtcggtt
     2641 tcggtggccc gagcgaggtc ctcgacgctc gaggggccct tggccagctc cttgtaaagc
     2701 ccgagttgat cgccgacgac gatcgtcgcc gcatgcagcg cggccccgaa gtcgtgcacg
     2761 aaattcccca tgaaagcatt cagcttcgcc tcgtccaatg ccatggtctg ctctcctgtc
     2821 gatcgtcacg aagacgcgcg tgcgaaattg cgctcgcgtc tgatcgtcgg cccggcaccg
     2881 gcgcgcccgc aatacgcagc aatgcgtaca cggcttgcca tccggcgcgc ggcggcatga
     2941 tgattgggct ttcaccgccg ccgatcccat gccctgcacg cgctgtgacg ccgacaaccc
     3001 gcccggggcg cgcttttgcg gcgcctgcgg ggcaagcctc gaggccgcct gcgcgcactg
     3061 cggctcggtg ctgctggccg gccaacgctt ttgcaccggc tgtggcgcgg acgtcgccgg
     3121 gcctgccaag gccgcccccg atgacggcga acgccgccac gcgaccgtga tgttctccga
     3181 cctgtcgggc tacaccgcgt tgaacgaaac cctggacccg gaagaagtcg aagcgatcat
     3241 gggccggatc aaggccgaag ccacggcggt gatcgaaagc cacggcggca cggtgaacca
     3301 gttcgtcggc gacgagatca tggcgctctt cggcgtgccg ctcgcgcgcc gcgacgaccc
     3361 gcggcgcgcc gtccgcgcgg cgctcgagct gcaccgcgtc gtcgatcgac tcgtcgccgg
     3421 cctcaagccc ggccacggcg ctgcactgac catgcacacc ggcatcaaca ccggcctcgt
     3481 cgtcgcgcgc cgcagcgacg cgcgggccgg cgactatgcg ctgaccggcg acacggtgaa
     3541 caccgcggcg cgcctgcgca gcctggcaac gccgggcgaa atcgtcgtca gcgcggagac
     3601 ctggcagcag gtgtcggagt acttcgaagc ggaagccggc gcgccggtcg aagtcaaagg
     3661 caaggagcgg ccgctcgtgc cgtaccggat ccgcaccgag cgggccgcgc cggcctcggg
     3721 cgacgctgcg ctcgtcggcc
//
LOCUS       DASVHM010000920         5522 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_214141, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000920 DASVHM010000000
VERSION     DASVHM010000920.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5522
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214141"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..992)
                     /locus_tag="VF308_16930"
     CDS             complement(<1..992)
                     /locus_tag="VF308_16930"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011463149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HEX7438389.1"
                     /translation="MTTAAAWLQAGAHHSAQTLLDSLSRRSGVPFAVELPDGTRCESG
                     NGAAAFTVVFHSDAALLATFTRGHIGLLESYFDQSVDVQGDLGAAFAAAMAAGFDLPS
                     WPWDALENRLHEWGHSNCSPAQAKANARAHYGLGAGFYRLWLDDPLMMYTCAYWPEGT
                     RTLEQAQRNKIDHVCRKLRLAEGERFVDIGCGFGGFMLRAEETTGALGTGINTTTEQV
                     EWLRAEIDRRGLQNRLAVREADFREVDGAYDKVVSIGVLEHAGRNQLAEVIRAHADFL
                     KPGGLGMLHFIGHVGRYDTELFIRKHVFPGGWIPSLAEVIVEMERCGLEVLDVE"
     gene            complement(1174..3030)
                     /gene="ftsH"
                     /locus_tag="VF308_16935"
     CDS             complement(1174..3030)
                     /gene="ftsH"
                     /locus_tag="VF308_16935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEX7438390.1"
                     /translation="MKRYVPQAKAWSPWVWLALVFALWVLKGAWEQSGAVEVVPYSVF
                     EQYLQEGKLSEVQVGDRLVTGKLRSPQGGKTSVVSTLVEPAVAERLSRYGVPYSRIHE
                     SNWLTDALTWAGPSLIFLGLWYLMSRKLAGKGGVGWLGIGQSKAKVYMEQTTGVRFDD
                     VAGVDEAKAELQEIVDFLKNPKEHGRLGAHMPKGVLLMGPTGTGKTLLARAVAGEAGV
                     PFFSISGSEFIEMFVGVGAARVRDLFEQARASAPAIIFIDELDALGKTRGAASIIGGH
                     DEREQTLNQLLVELDGFDPSVGVVLLAATTRPEILDPALLRAGRFDRQVLVDRPDRRG
                     RLAILQVHAKKVSLAPGIDLDQVAAITVGFAGADLANLVNEAALVATRRQGDAVTLAD
                     FTQAIERIVAGIEKKHRLLGDVERRLVAYHELGHALTALALPGTDRVHKVSIVPHGVG
                     ALGYTLQRPSEDRHLLRRGELVDKLTVLLGGRAAERLVFGEPSTGAADDLARATDLAR
                     DMVLRYGMDDALGPVTYADEKPTLLLGEAGVAAHADRTSPETAQRIDEAVRGLLQGAF
                     DRALAILRENRVVLDRAAAALIERETLDEAELRALAGELRLPPALPQVLQVA"
     gene            complement(3290..4093)
                     /locus_tag="VF308_16940"
     CDS             complement(3290..4093)
                     /locus_tag="VF308_16940"
                     /inference="COORDINATES: protein motif:HMM:NF040452.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6515 family protein"
                     /protein_id="HEX7438391.1"
                     /translation="MRGRNRRDTVDRSNENDECSRGPLRIETLGGHTIDLPLHCEISN
                     RKSVTMKYSIPLIAAALTALAFSSGSAIAQDRHDHPGHAPGGPGAPRLHLDQRYHHDH
                     YYPPRGYGLPALPGGSVGIAFGGGRYFFHGGVWFRPLGGRFVVIAPPFGIVVPILPPS
                     YVTLWIGGAPYYYANGVYYTPLAGQGYTVVAPPPGADAAQPVPSAAVPKTPAEPIIYP
                     RSGQSAAQTETDREECNRWATTQPSAVADAEVFQRALAACLDGRGYTVR"
     gene            4348..5313
                     /locus_tag="VF308_16945"
     CDS             4348..5313
                     /locus_tag="VF308_16945"
                     /inference="COORDINATES: protein motif:HMM:NF041079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBASS cGAMP-activated phospholipase"
                     /protein_id="HEX7438392.1"
                     /translation="MSMPPLASDGPLRVLSLAGGGFLGLYTAVVLEGLEARAGEPLGR
                     RFDLIAGTSIGGLLALALAYEVPMSRLVRLFVDQGPAVFSSRDLPSGAVSRLLDLSRS
                     VLGPKYSGAALRQALLAELGERRLADALHRVVVPAVDVDQCETKIFKTPHVAASEGDG
                     DLRAVDVAMAACAAPAYFPAVRIGRRLYADGGLFAVAPDQVALHELEHFMGIAPGRVS
                     MLSIGTATAHYRPAEGVRDDAGAVGWLSGGRLVLTLLSTQQQHVQAMVEDRLADRYLR
                     LDADWPAEAGLGIDVATPKAVEVLSTLARKTLRKADPRTLDSFTT"
BASE COUNT          848 a         1893 c         1915 g          866 t
ORIGIN      
        1 ttctcgacgt cgagcacttc gagcccgcac cgttccatct cgacgatcac ctcggccaag
       61 ctcgggatcc agccaccggg gaagacgtgc ttgcggatga acagttcggt gtcgtagcgg
      121 cccacgtggc cgatgaaatg cagcatgccg aggccgccgg gcttgaggaa gtcggcatgc
      181 gccctgatca cctcggccag ttggttgcgc cccgcatgtt cgagcacacc gatcgacacc
      241 accttgtcgt acgcgccgtc cacttcccgg aagtccgcct cgcgcacggc caggcgattc
      301 tgcagaccgc gacgatcgat ttcggcgcgc agccattcga cctgctcggt cgtggtgttg
      361 atgccggtgc cgagcgcgcc ggtcgtttcc tctgcccgca acatgaagcc gccgaatccg
      421 caaccgatgt cgacgaatcg ttccccctcg gcgagccgca gcttgcggca cacatggtcg
      481 atcttgttgc gctgcgcctg ttcgagcgtg cgcgtgccct cgggccaata ggcgcaggtg
      541 tacatcatca gcggatcgtc gagccagagg cggtagaacc ccgcgcccag gccgtagtgc
      601 gccctcgcat tggccttcgc ctgggccggg gagcagttcg agtggcccca ctcgtgcagc
      661 cggttctcga gtgcgtccca gggccacgac ggcaggtcga aacccgcggc catcgccgcg
      721 gcgaatgcag cgcccaggtc gccctgcacg tccacgcttt gatcgaagta cgactcgagc
      781 aggccaatgt gcccgcgcgt gaaggttgcc agcagcgccg catcggaatg gaagacgacg
      841 gtgaacgccg ccgcgccgtt gccgctttcg cagcgcgtgc catcgggaag ctcgaccgcg
      901 aacggcaccc cggagcgccg gctcagggag tcgagaagtg tctgcgccga atgatgcgca
      961 ccggcctgca gccaggcagc ggccgtcgtc acccccgtgc ctcccacggt ggcagcacgg
     1021 cctcgaagcg gcgggtcgcg agtgggttca tgccgcccat tgcactgtgt ggcgatcacg
     1081 aagcgcttga cgcccgtcac gaatcgagcg ggtcgcgaaa cctcgacgcc tgaattgacc
     1141 tgccgagccg cggcgctcgg cactgcctcg tcctcaggcg acctgcagga cctgcggcaa
     1201 cgccggcggc aggcgcagtt ctccggccag cgcccgcaat tcggcttcgt cgagcgtctc
     1261 gcgctcgatc aaagccgcgg cggcgcggtc gagtacgacg cggttctcgc gcaggatcgc
     1321 gagcgcccga tcgaaggcgc cctgaagcag gccgcgcacc gcctcatcga tgcgctgcgc
     1381 cgtctcgggg ctcgtccggt cggcgtgggc cgccaccccc gcttcaccca ggagcagcgt
     1441 gggcttttcg tcggcgtagg tcaccggccc gagcgcatcg tccatgccat agcgcagcac
     1501 catgtcgcgc gcgagatcgg tggcgcgcgc caggtcgtcg gcagcgcccg tcgagggttc
     1561 gccgaacacc agccgctcgg ccgcgcgccc gcccaggagc acggtcaact tgtcgacgag
     1621 ttcgccgcgg cgcagcagat ggcggtcctc gctcggccgc tgcagcgtgt agccgagcgc
     1681 gccgacgccg tgcggcacga tcgacacctt gtgcacgcgg tcggtgccgg gcagcgccaa
     1741 agccgtcagc gcatgaccga gctcgtgata cgccacgagc cggcgctcca cgtcgccgag
     1801 caggcggtgc ttcttctcga tgccggcgac gatgcgctcg atcgcctggg tgaaatcggc
     1861 cagggtcacg gcgtcgccct ggcggcgcgt cgcgaccaat gctgcctcgt tgacgaggtt
     1921 ggcgaggtcc gcgccggcaa agccgacggt gatcgcggcc acctggtcga ggtcgatgcc
     1981 gggcgcgagg ctcaccttct tcgcgtgcac ctgcaggatc gcgagccggc cgcggcgatc
     2041 gggccggtcg accagcacct ggcggtcgaa gcgtccggca cgcagcaacg cggggtcgag
     2101 gatctcgggg cgagtggtcg cggcgagcag caccacgccg acgctcgggt cgaagccgtc
     2161 gagctcgacc agcagctggt tcagcgtctg ctcgcgttcg tcgtgtccgc cgatgatcga
     2221 ggcggcgccg cgcgtcttgc ccagcgcgtc gagctcgtcg atgaagatga tggccggcgc
     2281 actggcccgc gcctgctcaa acagatcgcg cacccgcgcg gcgccgacgc cgacgaacat
     2341 ctcgatgaat tccgagccgc tgatcgagaa gaacgggacg cccgcttcgc cggccacggc
     2401 gcgcgcgagc agtgtcttgc cggtgccggt cgggcccatc aacagcacgc ccttgggcat
     2461 gtgcgcaccg agccggccgt gctccttcgg gttcttcagg aagtcgacga tctcctgcag
     2521 ttcggccttg gcctcgtcga cgcccgccac gtcgtcgaag cgcacgccgg tcgtctgctc
     2581 catgtagacc ttggccttgc tctggccgat gccgagccac ccgacgccac ccttgccggc
     2641 aagcttgcgg ctcatcaggt accaaaggcc gagaaagatc agcgatggcc cggcccacgt
     2701 caacgcgtcg gtcagccagt tcgattcatg aatgcggctg tagggcacgc cgtagcgcga
     2761 cagtcgctcg gccacggcgg gctcgaccag ggtggagacg acactggtct tgccgccctg
     2821 cggcgagcgc agcttgccgg tcacgaggcg gtcgcccacc tgcacctccg acagcttgcc
     2881 ctcctgcagg tactgttcga acacgctgta gggcacgact tcgacggcgc cgctctgctc
     2941 ccacgcgccc ttgagcaccc acagcgcgaa cacgagggcc agccagaccc acggcgacca
     3001 cgccttcgcc tgcggcacgt agcgcttcat ggcgccgcga tcggctgctg catgccgggc
     3061 ctgccggacg gcaggagcac caggcgcgaa tgtgacggcg gatccgaggc gcgctcttgc
     3121 agcgaggcct gcgcgaccgc caacgcattc aggatcgggg ttcgcttcgg ttctatggct
     3181 gcttctccct gccgtgtcgg gagacacagc ttcgctgcgg gagaaggtgc ccgggttgat
     3241 tcggcgcaaa tcgccggaag atcggtccgc cgagacgggt cgatgcgggt caacgcacgg
     3301 tatagccgcg gccgtccagg catgccgcca gcgcgcgctg gaacacctcg gcatcggcca
     3361 ccgcgctggg ttgagtcgtc gcccagcggt tgcactcttc ccggtcggtc tccgtctgcg
     3421 cggcactctg gccgctgcgt gggtagatga tcggctcggc aggcgtcttc ggcacagcgg
     3481 ctgatgggac aggctgtgcg gcgtcggctc cggggggtgg cgccacgacc gtgtaaccct
     3541 gccccgccaa cggtgtgtag tagacgccgt tcgcatagta gtagggcgcc ccgccgatcc
     3601 acagcgtgac gtaggaaggc ggcaagatcg ggaccacgat gccgaatggc ggtgcgatca
     3661 cgacgaagcg tcctccgagc ggccggaacc acacgccgcc atgaaagaag tagcggcccc
     3721 cgccgaaggc gatgccgacg ctgccccccg gcagcgcagg caggccgtag cctcggggcg
     3781 gatagtagtg gtcgtggtga tagcgttggt cgagatgcag gcgaggcgcg ccggggccgc
     3841 ccggcgcgtg accggggtgg tcgtggcgat cctgggcaat cgccgagccg ctcgagaagg
     3901 cgagcgcggt caaggccgcg gcgatgagcg ggatgctgta cttcatggtg acggacttcc
     3961 gatttgaaat ttcacagtgc agcggcaggt cgatcgtgtg gccgccgaga gtctcgatgc
     4021 gaagcggacc gcgcgagcac tcatcgttct cattggaacg gtcgaccgta tcccggcgat
     4081 tgcgcccgcg caaagaagcg tatcgggcgt atcgtggtgc acatcacgga cgaggcgcat
     4141 gaagggatcg gcagcggtgc ttcaactgga ggctggcgtg acacatgcca gccgatcgcg
     4201 ccggaccctg gtcctcggcg cgctgctcgc gcgttgcctc gggagcagca cggacggcgc
     4261 cggggcttcc tgccgtactg agcggcggcg cgggccggtt gcgccggatc aagcggcgcg
     4321 gcccgggatc gtgccaagct gatgccgatg tcgatgccac cgcttgcctc cgacggcccg
     4381 ctgcgcgtcc tctcgctggc gggcggcgga tttctcggcc tctacacagc cgtcgtgctc
     4441 gaaggcctcg aggcccgggc cggcgagccg ctcggccggc gcttcgacct gatcgccggc
     4501 acctcgatcg gcgggctgct cgcgctcgcg ctcgcctacg aagtgccgat gtcgcggctg
     4561 gtgcgcctgt tcgtcgacca agggccggcg gtgttctcga gccgcgactt gccgagcggc
     4621 gcggtcagcc gcctgctcga cctgagccgc tcggtgctcg gccccaagta ttccggcgct
     4681 gcactgcgcc aggccttgct cgccgagctc ggcgaacgac gcctggccga cgccttgcac
     4741 cgcgtcgtcg tgccggcagt ggacgtggac cagtgcgaga ccaagatctt caagacaccg
     4801 cacgtggctg cttcggaggg cgacggcgac ctgcgcgccg tcgacgtggc gatggcggcg
     4861 tgtgccgcgc cggcgtattt tcccgccgtg cgcatcggtc gtcgtctgta tgccgatggc
     4921 ggcctgttcg cggtcgcgcc cgaccaggtg gcattgcacg aactggagca cttcatgggc
     4981 atagctccag gccgcgtctc gatgctctcc atcggcaccg cgaccgccca ctatcggccg
     5041 gccgaaggcg tgcgcgacga cgccggcgcg gtcggctggc tgtcgggcgg aagactcgtg
     5101 ctgacgctgc tgtcgacgca gcagcagcac gttcaggcca tggtcgagga ccggctggcc
     5161 gatcgctacc tgcggctcga cgcggactgg ccggccgagg cgggcctcgg catcgacgtg
     5221 gcgacgccga aagcggtgga agtgttgagc acgctggcgc gcaagacgct gcgcaaggcc
     5281 gatccgcgca cgctcgactc gttcacgact tgagccgaat cagaccctgt tgcgtcgtct
     5341 gcgtcgtcgt gcgctgatct ggcgcaaggc ctgcggccgc aagaggccta gattgaaacc
     5401 tgaacgcggt cggaatcgga aacgagcatc gaagccgcgg cgctgcaatc gactgaaagg
     5461 atgccatcgt gaaaacggat gctgatctga agagagacgt gacggccgaa ctggcctggg
     5521 at
//
LOCUS       DASVHM010000921         2738 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_285388, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000921 DASVHM010000000
VERSION     DASVHM010000921.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2738
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285388"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VF308_16950"
     CDS             <1..196
                     /locus_tag="VF308_16950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019657874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX7438393.1"
                     /translation="PERLLWASDWPHSERTQSTPHDADLVDLLAVWVPDAATRRRICV
                     DNPARLYGTEEWAPSSGSFP"
     gene            193..1089
                     /locus_tag="VF308_16955"
     CDS             193..1089
                     /locus_tag="VF308_16955"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEX7438394.1"
                     /translation="MTSPRTRIRGVVAAAATPVGADFAPDLGRLAAHCRALLDGGCDA
                     INLLGTTGEANAFSVEQRLRVMRSVAEAGLPLDRFMVGTGVCALEDTVRLTQAACEIG
                     FAGALVLPPFFYQGVPDLGLVEYISELVRRAAHPKLALYLYHIPQNTGVPWPIDVVAE
                     LKRLHPKELLGLKDSAGDLAYARAVASAVADFDVFPSSESALSNAHADGYAGCISATV
                     NLTALESQVAWSGQGTEVVSAAARKASDLRAIFVQYPLVSAVKAALGARYHDAEWSRV
                     CLPLRPLDAQRAGALCRALGFV"
     gene            complement(1117..1659)
                     /locus_tag="VF308_16960"
     CDS             complement(1117..1659)
                     /locus_tag="VF308_16960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011519099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase"
                     /protein_id="HEX7438395.1"
                     /translation="MWKIIRQIVRTGSRTEAAPDCDDALRVEAEQIQREVLAILGRAL
                     AIRQVDAGSCNGCELEINALDNPYYNLEGLGIRFVASPRHADLLLVTGPVSRNMELAL
                     WRTHGATPAPKLVVAVGDCGCDGGIFGAGYATRGPVASVVAVDVAVPGCPPAPIEILR
                     GILTAVRRCRPAVGIGLAAK"
     gene            complement(1690..>2738)
                     /locus_tag="VF308_16965"
     CDS             complement(1690..>2738)
                     /locus_tag="VF308_16965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007735010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Ni,Fe-hydrogenase III large subunit"
                     /protein_id="HEX7438396.1"
                     /translation="IEPGHFRFSVVGEKVLRLEERLGYTHKGIEKRFTQLAPLEAHRL
                     AGRVSGDSTVAFAWAFCMALEMAAGCAIPARAAWLRALLLERERVANHLGDLGALGND
                     AALAFGLAQFSRLREDWLRLSKEAFGHRLMMDCVVPGGTGCDIDGAAADRMSRQCDAT
                     LLEVQALRAVYDEHAGLQDRFMGAGQVSPELAAKLGLTGLAGRASGRSADLRRDHPWP
                     PYDTLDVQPATHRAGDVAARVAVRFLEVFESLRLIRAILAGLPPGAHRTELRLGAGAA
                     VGAGWVEGWRGEVFVALELDGDAQSHRIRRCHCHDPSWQNWPVLEHAVIGNIVPDFPL
                     INKSFNLSYSGSDL"
BASE COUNT          403 a          966 c          960 g          409 t
ORIGIN      
        1 cccggaacgg ctgctctggg cgagcgactg gccgcacagc gagcggaccc agagcacgcc
       61 ccacgatgcg gacctcgtcg acctgctggc ggtgtgggtg ccagatgccg cgacacgacg
      121 gcgcatctgc gtcgacaacc cggcccgcct gtacggcacc gaagagtggg cgccttcttc
      181 cggaagcttt ccatgacgag cccgagaact cgcattcgcg gcgtcgtcgc ggcggccgcc
      241 acgccggtcg gggccgactt cgcgccggac ctcggtcgtc tcgccgctca ctgccgcgcg
      301 ttgctcgacg gcggctgcga tgcgatcaac ctgctcggca cgacgggcga agcgaacgcg
      361 ttcagcgtcg aacagcgcct gcgcgtgatg cgctcggtgg ccgaggccgg cctgccgctc
      421 gatcgtttca tggtcggcac gggcgtctgc gccctcgaag acaccgtccg gctcacccag
      481 gccgcgtgcg agatcggctt cgcgggcgcg ctggtcctgc cgccgttctt ctatcaggga
      541 gttccggacc tcggcctggt cgagtacatc tccgaactcg tgcgtcgcgc cgcgcatccg
      601 aagctggcgc tctacctcta tcacatcccg cagaacacgg gcgtgccgtg gccgatcgac
      661 gtggtcgcgg aactcaagcg cctccacccg aaggaactgc tcggcctcaa ggacagcgcc
      721 ggcgatctcg cgtatgcgcg cgccgtcgcc agcgcggtcg cggatttcga cgtgttcccg
      781 agttcggaat cggccctgtc gaatgcgcat gccgacggct acgccggctg catctcggcg
      841 accgtgaacc tgaccgcgct cgagtcacag gtcgcgtggt ccgggcaggg caccgaagtc
      901 gtctcggcgg cggcgcgcaa ggccagcgac ttgcgcgcga tcttcgtgca atacccgctc
      961 gtcagcgccg tcaaggccgc gctgggcgcg cgttaccacg acgccgaatg gtcgcgcgtc
     1021 tgcctgccgc tgcgcccgct ggacgcgcag cgtgctggcg ctctatgtcg ggcgctcggc
     1081 ttcgtgtgaa ggtcgacgcg cctcgggggc ggcgggtcac ttggcagcga ggccgatccc
     1141 taccgccggc cggcaccggc gcacggccgt gaggatgccg cgcaggatct cgattggcgc
     1201 cggcgggcac cccggcaccg cgacgtccac cgcgacgacg ctcgcgaccg ggccgcgcgt
     1261 cgcataaccc gcgccgaaga tcccgccgtc gcagccgcag tcgccgaccg cgacgacgag
     1321 cttgggcgcg ggggtggcgc catgggttcg ccagagcgcg agctccatgt tgcgcgagac
     1381 cgggccggtc accagcagca ggtcggcatg gcgcgggctg gcgacgaacc ggatgcccag
     1441 gccttcgagg ttgtagtagg gattgtcgag cgcgttgatt tccagttcgc agccgttgca
     1501 ggatcccgcg tcgacctggc ggatcgcgag cgcccgcccc aggatggcga gcacttcgcg
     1561 ctggatctgc tcggcctcga cccgcaacgc atcgtcgcag tcgggcgccg cttcggtgcg
     1621 gctcccagtg cggacgatct gtctgatgat cttccacatc ggcctagttc cgggtgatgg
     1681 acgcgcagct cacaggtcgg atcccgagta gctgaggttg aaggacttgt tgatcagcgg
     1741 aaagtcggga acgatgttgc cgatcaccgc atgctcgagc accggccagt tctgccacga
     1801 gggatcatgg cagtggcagc gccggatgcg gtggctctgc gcgtcgccgt cgagttcgag
     1861 cgcgacgaag acttcgccgc gccagccctc gacccaaccg gcgccgaccg ccgcaccggc
     1921 gccgagccgc agctcggtgc gatgcgcgcc gggcgggagc ccggccagga tcgcacgaat
     1981 caggcgcagc gattcgaaga cctcgaggaa gcggactgcg acccgggccg cgacgtcgcc
     2041 ggcacggtgc gtcgcgggct gcacgtccaa ggtgtcatag gggggccatg ggtggtcgcg
     2101 gcgcaagtcc gccgaccggc cgctggcgcg gcccgcgagc ccggtcaggc cgagctttgc
     2161 ggccagttcc ggactcacct gtccggcgcc catgaagcga tcctgcagcc ccgcgtgctc
     2221 gtcgtagacg gcgcgcagcg cctgcacttc gagcagcgtc gcatcgcact gcctgctcat
     2281 ccggtccgcg gccgcgccgt cgatgtcgca tccggtgccg ccaggcacca cgcagtccat
     2341 catcagccgg tggccgaagg cctctttcga caggcgcagc cagtcttcgc ggagccggga
     2401 gaactgggcc aggccgaacg ccagcgcggc gtcgttgccg agggcgccga ggtcgccgag
     2461 atgattggcg acgcgctcgc gctcgagcag cagcgcacgc agccaggcgg cgcgcgccgg
     2521 gatcgcgcag cccgccgcca tttccagcgc catgcagaag gcccacgcga aggcgaccgt
     2581 cgaatcgccg gaaacgcgcc cggcgaggcg atgcgcttcg agcggggcga gttgggtgaa
     2641 gcgcttttcg attcccttgt gggtatagcc gagccgctcc tcgagtcgca gcactttttc
     2701 tccgacgacc gaaaaccgga aatgcccggg ctcgatga
//
LOCUS       DASVHM010000922         3300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_1438794, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000922 DASVHM010000000
VERSION     DASVHM010000922.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 3300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3300
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1438794"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1710)
                     /locus_tag="VF308_16970"
     CDS             complement(<1..1710)
                     /locus_tag="VF308_16970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEX7438397.1"
                     /translation="MSRAKPSKAQRGAQSVRSVNYSTSPLLASRTPPWRSKFLVALVG
                     LSFCVLLGRAVYVQIIGSAFFLKQGEIRYGRTLDLPASRGRIVDRNGLILASSVPAPS
                     IWAIPKDLEGDKAQRARLAKLLDMTAADLDDRLEDNPNFVWLRRQVEESVAKDVLALG
                     IKGVHQVREYKRKYPEGEAAAHVVGFTNVEDRGQEGIELAFQKELAGRDGTRRVIKDR
                     LGRVVEDIGDSVAPVDGRDIELAVDSKVQFFAYQRIRDAVAENKAKAGSVVVLDAQTG
                     EILALANFPSYSPADRRNLSGAQLRNRALTDTFEPGSTMKPFIAGWALETGRVTPSTM
                     IQTAPGRMMLTGSLISDSHPHGDLTVTEVIQKSSNVGAVRMAMTFQPREMWELYSAVG
                     FGQKPQIGFPGAVTGRLRPYKTWRPIEQATMSYGYGLSASLFQIAHAYTVFAHDGELI
                     PATMTKNSATAAGMPVGGVRVLSAKTAQTVREMLHLVTLPGGTAPKAQVMGYSVGGKS
                     GTAYKQEGKGYAQKKYRAWFVGMAPIQHPRIIVAVMVDEPTAGKYFGGDVAAPVFSQV
                     VQQT"
     gene            complement(1707..2003)
                     /gene="ftsL"
                     /locus_tag="VF308_16975"
     CDS             complement(1707..2003)
                     /gene="ftsL"
                     /locus_tag="VF308_16975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HEX7438398.1"
                     /translation="MSRLNLLLLLVLLVSSVYLVRVSYDSRRFFAQLDRAQSEERLLD
                     SEHERLKAEKQAQATPLRVEKTARDKLAMRTATPAVTQYVVYARAASAAEGRVP"
     gene            complement(2000..3010)
                     /gene="rsmH"
                     /locus_tag="VF308_16980"
     CDS             complement(2000..3010)
                     /gene="rsmH"
                     /locus_tag="VF308_16980"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEX7438399.1"
                     /translation="MQPAAALQHTAVLLHEAVDALVTRPDGVYVDGTFGRGGHARLLL
                     ARLSARGRLIAIDRDPQAIAAATSGAEPISDPRFSIHHGSFGQMKSMLTALGVSRVDG
                     VLLDLGVSSPQIDDAKRGFSFRFDGPLDMRMDPTRGESAAEFLQRADERHIAEVIRDY
                     GEERFAVQVAKALVARRESGTPVRTTRELSAVVAGAVKTREPGQDPATRTFQALRIFV
                     NAELEELEQGLSAALELLQPGGRLVVISFHSLEDRIVKTFIVRESRSVVDRRAPFAAA
                     APTRLKAVARIKAGETELRANPRARSAVMRVAERTDAPMAQAPAVTLSSRRRRGSREG
                     RA"
     gene            complement(3011..>3300)
                     /locus_tag="VF308_16985"
     CDS             complement(3011..>3300)
                     /locus_tag="VF308_16985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019255554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cell division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HEX7438400.1"
                     /translation="PRPAWENFRDRVASLPMEASGWKRVFLGNAMDVDIDASSRVLIA
                     PELRASAGLVRDVMLLGMGSHFELWDAQRHAEHEAAVMQSQMPDSLKNFSF"
BASE COUNT          514 a         1140 c         1105 g          541 t
ORIGIN      
        1 cgtttgctgg acgacctggc tgaacaccgg cgccgcgacg tcgccgccga aatacttgcc
       61 ggcggtcggc tcgtcgacca tcaccgcgac gatgatgcgc ggatgctgga tcggcgccat
      121 gccgacgaac caggcgcggt acttcttctg cgcatagccc ttgccttcct gcttgtacgc
      181 ggtaccgctc ttgccgccca ccgaatagcc catcacctgc gccttcggcg cggtgccgcc
      241 gggcagggtc acgaggtgca gcatctcgcg cacggtctgc gcggtcttgg ccgacaggac
      301 ccgcacgccg ccgaccggca tccccgccgc cgtggccgag ttcttcgtca tcgtcgccgg
      361 aatcagctcg ccgtcgtgcg cgaacacggt ataggcgtgg gcgatctgga acagcgaggc
      421 ggagagtccg tagccgtagc tcatcgtcgc ctgctcgatc ggccgccagg tcttgtaggg
      481 acgcagccgc ccggtcaccg ccccggggaa accgatctgc ggcttctgcc cgaagccgac
      541 ggcgctgtac agctcccaca tttcgcgcgg ctggaacgtc atcgccatgc gcacggcgcc
      601 gacgttgctc gatttctgga tcacctcggt gacggtcagg tcgccgtgcg gatgcgagtc
      661 gctgatgagc gagccggtca gcatcatgcg gcccggcgca gtctggatca tcgtgctcgg
      721 cgtgacgcgc ccggtctcca gcgcccagcc ggcgatgaac ggcttcatcg tcgagcccgg
      781 ctcgaaggtg tcggtgaggg cgcggttgcg cagctgcgcg ccgctcaggt tgcgccggtc
      841 cgcgggcgag tagctcggaa agttagccag cgcaaggatc tcgccggtct gcgcgtcgag
      901 cacgacgacg ctgccggcct tggccttgtt ctcggcgacc gcgtcgcgga tgcgctggta
      961 ggcgaagaac tgcaccttcg agtcaaccgc gagctcgatg tcgcggccgt cgaccggcgc
     1021 gacgctgtcg ccgatgtcct cgacgacgcg gccgagccgg tccttgatga cgcggcgcgt
     1081 gccgtcgcgc ccggcgagtt ccttctggaa cgcgagctcg atgccttcct ggccgcggtc
     1141 ctcgacgttg gtgaagccga ccacgtgcgc cgccgcctcg ccttccggat acttgcgctt
     1201 gtattcgcgc acctggtgca cgcccttgat gccgagcgcg agcacgtcct tggcgaccga
     1261 ctcctcgacc tggcgccgca gccagacgaa gttcgggttg tcctcgagcc ggtcgtcgag
     1321 gtcggccgca gtcatgtcga gcagtttcgc cagccgggcg cgctgcgcct tgtcgccttc
     1381 gaggtccttc ggaatcgccc agatcgacgg tgccggcacg ctcgaggcga ggatcagccc
     1441 gttgcggtcg acgatgcggc cgcggctcgc gggcaggtcg agcgtgcgcc cgtaacggat
     1501 ctcgccctgc ttcaggaaga aagccgaacc gatgatctgc acatagaccg cgcgcccgag
     1561 caggacgcag aagctcaagc ccaccagcgc aaccaggaac ttcgagcgcc agggcggcgt
     1621 gcgcgaggcg agcagcgggc tcgtggaata gttgacgctg cgcacgctct gcgccccccg
     1681 ctgggccttc gacggtttcg cgcggctcat ggcacccgcc cctcggccgc cgacgcggcg
     1741 cgcgcataga ccacgtactg ggtcaccgcc ggcgtggcgg tgcgcatcgc gagcttgtcg
     1801 cgcgcagtct tttcgacccg caggggcgtc gcctgggcct gcttctcggc cttcagccgc
     1861 tcgtgctcgc tgtcgagcag gcgctcctcg ctctgggcgc gatcgagctg cgcaaagaag
     1921 cgccgcgagt cgtacgaaac ccgcaccagg tacacgctgc tcaccagcag cacgaggagc
     1981 agcagcaggt tgaggcggct catgcccgac cttcccgcga tccgcgccga cggcgcgatg
     2041 acagcgtcac ggcaggcgct tgcgccatgg gcgcgtcggt gcgctcggcc acccgcatca
     2101 cggccgagcg cgcgcgcgga ttggcgcgca gctcggtctc gcccgccttg atgcgcgcga
     2161 ccgccttcag ccgcgtcggc gccgcggcgg cgaacggcgc gcgccgatcc acgacgctgc
     2221 gactctcgcg cacgatgaag gtcttcacga tgcgatcttc cagcgaatga aaactgatga
     2281 cgacgaggcg gcctcccggc tggagcagct cgagcgccgc gctcaagcct tgttcgagct
     2341 cctcaagctc ggcgttgacg aaaatccgaa gcgcttgaaa tgtgcgcgtt gcaggatcct
     2401 ggcccggctc gcgggttttg accgcaccag ccacgaccgc ggaaagttcc cttgtggttc
     2461 gaacaggggt cccgctttcg cgccgagcaa caagcgcctt tgcaacctgt acagcaaacc
     2521 gttcttcccc atagtcacgt atcacctcgg caatgtggcg ctcgtcggcg cgttgcagga
     2581 actcggctgc gctctccccc cgggtcgggt ccatgcgcat gtcgagcggg ccgtcgaaac
     2641 ggaagctgaa tccgcgtttc gcgtcatcga tctgcggcga ggaaacaccg aggtcaagca
     2701 gcacgccgtc aacccggctg acgccgagcg cggtgagcat cgatttcatc tgaccaaaac
     2761 tgccgtgatg gatcgagaag cgagggtccg agatcggctc ggcaccggat gtcgcggccg
     2821 caatcgcctg cggatcgcgg tcgatggcga tgaggcgccc ccgggccgag agtcgcgcca
     2881 gcagcaagcg cgcatggcca ccccggccga atgtgccgtc gacatagacg ccgtcgggcc
     2941 gggtgacgag tgcatcgacc gcttcgtgca gcaagacggc ggtgtgctgc aaggccgctg
     3001 cgggttgcat tcagaaactg aaattcttga gcgaatcggg catctgcgat tgcatcaccg
     3061 ccgcctcgtg ttcggcgtgg cgctgcgcat cccagagttc gaagtgactg cccatcccga
     3121 gcagcatcac gtcgcggacg agcccggcgg aggcccgcag ttcgggcgcg atgaggacgc
     3181 gcgaagacgc gtcgatgtcg acatccatcg cattgccgag gaagacgcgc ttccagccgc
     3241 tcgcctccat cggcaggctg gcgacacggt cgcggaagtt ttcccacgcc gggcgcggaa
//
LOCUS       DASVHM010000923         1619 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_214527, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000923 DASVHM010000000
VERSION     DASVHM010000923.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214527"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..702
                     /locus_tag="VF308_16990"
     CDS             <1..702
                     /locus_tag="VF308_16990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011801756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEX7438401.1"
                     /translation="TLLLTIKGMPSQYIVKMAIATSLATICFTSVSSVRSHHKRGAVR
                     WDVVKLLAPGIVVGSLLGAQIAKALPPQVLALLFAAFVAFSGTQMLLDRKPKASRQLP
                     QGGGMLASGGAIGVLSALVGAGGGFISVPFMAWCNVPIHYAVATSAALGFPIALAGTV
                     GYIFAGWSLHDMPVGALGFIYLPALVTIAAASVLTAPLGARVAHRLNVTQLKRLFAVL
                     LYVLAVYMLYKGIAA"
     gene            755..>1619
                     /gene="ybiB"
                     /locus_tag="VF308_16995"
     CDS             755..>1619
                     /gene="ybiB"
                     /locus_tag="VF308_16995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009551970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein YbiB"
                     /protein_id="HEX7438402.1"
                     /translation="MSIAHYIREIGRGKDGARSLDQSQAHDLMSQVLDARVSDLEVGA
                     FAVAMRIKGESIAELAGFLEAAHERCLTLRTQRPTVVLPSYNGARKLPNLTALLALLL
                     AQEGIDVLVHGPEHDAGRVTTAAIFRDLGLPFANDATEVEHAWARHEPVFIPIDALCP
                     PLARLLDVRRVVGLRNSGHTIAKLLMPGNPEHALRVVNYTHPDYAALLHGLLGHIAAH
                     AMLMRGTEGEPVADPRRNPKLDVYIAGELRTDLSRTAQEGVLSALPLLPSSYAASTAL
                     YIQSVVSGEKPA"
BASE COUNT          242 a          576 c          531 g          270 t
ORIGIN      
        1 acgctgctgc tgacgatcaa gggcatgccg tcccaataca tcgtcaagat ggcgatcgcc
       61 acctcgctcg cgacgatctg cttcacgtcg gtctcgtcgg tgcgttcgca tcacaagcgg
      121 ggggcagtgc gctgggacgt ggtgaagctg ctcgcgccgg gcatcgtcgt cgggtcgctg
      181 ctcggcgcgc agatcgccaa ggcgctgccc ccgcaggtgc tcgccctgct gttcgccgcc
      241 ttcgtcgcct tctcgggaac gcagatgctg ctcgatcgca agcccaaggc atcgcggcaa
      301 ctcccgcaag ggggcggcat gctcgcctcc ggcggcgcga tcggcgtgct gtcggcgctc
      361 gtcggcgccg gcggcggatt catctcggtt ccgttcatgg cctggtgcaa cgtcccgatc
      421 cactacgccg tcgcgacttc ggcggcgctg ggctttccga tcgcgctggc gggaacggtc
      481 ggctacatct tcgccggctg gtcgctgcac gacatgccgg tcggagccct cggattcatc
      541 tacctgcccg cgctggtgac catcgccgcc gcgagcgtgc tgaccgcgcc tctgggcgcc
      601 cgcgttgcgc atcggctcaa cgtgacgcag ctgaagcgcc tttttgccgt gctgctctat
      661 gtgctggcgg tctacatgct ctacaagggg atcgcagcct gattcgcgat caggcgcggg
      721 cctgaaaatt gcgaggcgat cgcaaaggtc gagcatgagc atcgcacatt acatccggga
      781 gatcggccgc ggcaaggacg gcgcccgttc gctcgaccag tcgcaggcgc acgacctgat
      841 gagccaggtg ctcgacgccc gcgtgagcga tctcgaggtc ggcgcgttcg cggtcgcgat
      901 gcggatcaag ggcgaatcga tcgccgaact tgcgggcttt ctcgaggcgg cccatgagcg
      961 ttgcctgacg ctacgcacgc agcggccgac cgtcgtgctg ccgtcctaca acggcgcgag
     1021 aaagctgccg aacctgaccg ccctgctcgc gctgctgctg gcgcaggaag gtatcgatgt
     1081 gctggtgcac ggaccggagc acgacgccgg ccgcgtcacg acggcggcga tcttccgcga
     1141 cctcggcctg ccattcgcca acgatgcgac cgaggtcgag catgcctggg cccggcacga
     1201 accggtgttc atccccatcg acgcgctctg ccccccgctg gcgcgcctgc tcgacgtgcg
     1261 ccgcgtcgtc ggcctgcgca attccgggca cacgatcgcc aagctgctga tgcccggcaa
     1321 ccccgaacac gcgctgcggg tcgtgaacta cacccatccc gactacgcgg ccctgctaca
     1381 cggcttgctc ggccacatcg ccgcgcatgc gatgctgatg cgcggcaccg agggcgaacc
     1441 ggtcgccgac ccgcgccgca acccgaagct cgatgtctac atcgcgggcg aattgcgcac
     1501 cgacctgtcc cgcaccgccc aggagggcgt cctgagcgca ttgccgctgc tgccgagcag
     1561 ctacgcggcg agcaccgcgc tctacatcca gtcggtcgtc agcggcgaga agccggcac
//
LOCUS       DASVHM010000924         2323 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_502231, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000924 DASVHM010000000
VERSION     DASVHM010000924.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_502231"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1205)
                     /gene="gspL"
                     /locus_tag="VF308_17000"
     CDS             complement(<1..1205)
                     /gene="gspL"
                     /locus_tag="VF308_17000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspL"
                     /protein_id="HEX7438403.1"
                     /translation="MSTLVVCIPARRRVRARGPDAPLSEADRGSIEYAYATSPDGIDV
                     ATQGRCAAALLPKATTIVAVLADTDVAWHRITLPKAPAARLRAALCGILEEALLEDAE
                     AVHLAVAPDALPGQLTWVAAVDRQWLSNELATLQRAHVFVDRVVPTVWPDDPPSGHFS
                     TSEGAEPDAKNAVALTWADNDGVANVRLQGGLARALVPSPTPPTTRWSASPSAAAAAE
                     QWLGAPVNVMPLEQRLLQAARSLWNLRQFDLAPRTRGARALRDSMRRFMSPGWRPVRI
                     GAVALVVAQIVGLNLWAWQQRGAIDARRASLQSLVKANFPRVAEQDIQRDPAAVMQRE
                     TQALRTLAGKPSETDLEPMLQAAASAWPPERPVENFRFEPGKLSLAATGWNDSQIEQF
                     RSLLRPGGW"
     gene            complement(1329..>2323)
                     /gene="gspK"
                     /locus_tag="VF308_17005"
     CDS             complement(1329..>2323)
                     /gene="gspK"
                     /locus_tag="VF308_17005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011830708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspK"
                     /protein_id="HEX7438404.1"
                     /translation="GAALLTAMIIVTLAATLAASMVWQQWRAVQVEAAERARIQAAWI
                     LSGALDWARLILKEDARNGGADHLGEPWAVPLAEARLSTFLATDATSTDDAPDAFLSG
                     AISDAQARYNLSNLVAQGKIDPAELAALARLCEAIGTASDVAGRIAAGLLSAHAAAGA
                     KAVVAAAASAPAAAASSASSAAIPTIDPSAPLLPQTVAQLSFLGIDAGALRTLAPYVV
                     LLPRATPVNVNTASREVLVAAIKGLDLASAERLIQVRQRTPFKTLPEVEREVPALAPL
                     DATKLSVSSSFFQVRGRLRLGDRALEQTSLVARRGLDVVVLQRERVSSRDQPAS"
BASE COUNT          339 a          774 c          868 g          342 t
ORIGIN      
        1 tgccagccgc cgggccgcag caggctgcgg aattgttcga tctgggagtc gttccaaccg
       61 gtcgcggcaa gactcagctt gcccggttcg aagcggaaat tctcgactgg gcgctcgggc
      121 ggccatgccg aagcggccgc ctgcagcatc ggttcgagat cggtctcgct cggcttgccg
      181 gcgagggtgc gcagcgcctg ggtctcgcgc tgcatcacgg ccgcgggatc gcgctggatg
      241 tcctgctcgg cgacgcgcgg aaagttcgcc ttgaccaggc tttgcagact cgcacgccgg
      301 gcatcgatcg cgccgcgctg ctgccaggcc cagaggttga ggccgacgat ctgtgccacg
      361 accagcgcca ccgccccgat gcgcaccggg cgccacccgg ggctcatgaa gcgacgcatc
      421 gaatcgcgca gcgcgcgcgc gccacgggtg cgcggcgcga gatcgaactg gcgcaggttc
      481 cagaggctgc gtgcggcttg cagcaggcgc tgttcgagcg gcatcacgtt gaccggcgcg
      541 ccgagccact gctcggcggc tgccgcggcc gacggagagg cgctccagcg tgtcgtcggc
      601 ggcgtcgggg agggcacgag cgcgcgcgcc aggccgcctt gcaggcgaac gttggcaacg
      661 ccgtcgttgt ccgcccaggt gagggccacg gcgttcttgg cgtccggctc ggcaccctcc
      721 gaggtcgaga agtggccgct cggcggatcg tccggccaga ccgtgggcac gacgcgatcg
      781 acgaacacgt gcgcgcgttg cagggtcgcc agctcattgc tcaaccattg gcgatcgacc
      841 gcggcgaccc aggtcagctg gccgggcagc gcgtcgggcg ccaccgcgag gtggacggcc
      901 tcggcgtctt cgagcagcgc ttcctcgagg atgccgcaca gggcagcccg caggcgcgcg
      961 gccggcgcct tcggcagcgt gatgcggtgc caggccacgt cggtatcggc gagcaccgcc
     1021 acgatcgtcg tcgctttcgg cagcagcgcg gccgcacacc ggccctgtgt cgcgacgtcg
     1081 atcccgtcgg ggctggtggc gtacgcgtac tcgatcgacc cgcggtccgc ttccgaaagc
     1141 ggcgcgtccg ggccacgcgc ccggacgcgc cggcgcgcag ggatgcagac aacaagggtc
     1201 gacatggaaa atagcggaat cggagctagc gcattgtagg tatctgcgga gcggaaacct
     1261 acgccaatca aggacttacg tcttgttgtt gtgcgcgatc gcagcagtgg ttctcgcttc
     1321 ttggaggttt atgaggcggg ctggtcgcgg cttgaaaccc gctcgcgctg cagcacgacc
     1381 acgtccaggc cgcggcgcgc gacgagcgat gtctgttcga gggcccggtc accgaggcgc
     1441 agccggccgc gcacctggaa gaagctggag gagaccgaga gtttcgtcgc gtcgagcggg
     1501 gcgagggccg gaacctcgcg ttcgacctcg ggcagcgtct tgaacggggt gcgctggcgc
     1561 acctggatga ggcgctcggc gcttgccagg tcgagaccct tgatcgccgc gaccagcacc
     1621 tcgcgggaag cggtgttcac gttgaccggt gtcgccctcg gcagcaagac gacgtagggc
     1681 gcaagggtgc gcagggctcc cgcatcgatg ccgagaaagc tcagctgtgc gacggtctgc
     1741 ggcaacaggg gtgcgctcgg atcgatcgtc gggatagcag cgctcgaggc gctggaggcg
     1801 gccgcggcgg gagcgcttgc cgctgcagcc acgacggcct tcgccccggc ggcggcatgg
     1861 gcgctgagga ggccggcggc gatgcgtccg gcgacatcgc tcgccgtgcc gatcgcttcg
     1921 cacagccggg caagggcggc gagctcggcc ggatcgatct ttccctgggc gacgaggttc
     1981 gagaggttgt agcgcgcctg cgcgtcgctg atcgcgccgg acagaaatgc gtcgggcgcg
     2041 tcgtcggtgc tggtcgcgtc cgtcgcgaga aaagtggaca gcctcgcttc ggcgagtggc
     2101 acggcccacg gctcgccgag gtgatccgca ccgccgttgc gcgcgtcttc cttgaggatc
     2161 aggcgagccc agtcgagtgc gccggagagg atccacgcgg cctggatccg ggcgcgctcg
     2221 gcggcctcga cctgcaccgc gcgccactgc tgccagacca tcgatgcggc gagcgtcgcg
     2281 gccagcgtca cgatgatcat cgcggtcagg agcgccgcgc cgc
//
LOCUS       DASVHM010000925         1523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_214661, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000925 DASVHM010000000
VERSION     DASVHM010000925.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214661"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            80..754
                     /locus_tag="VF308_17010"
     CDS             80..754
                     /locus_tag="VF308_17010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011801225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HEX7438405.1"
                     /translation="MKLFFDFLPVILFFGTFKVAEGRADLAARFASEHLGFLVSGGVV
                     GAAEAPVLLATLVVILATLLQVAFQVVRGRKVDLMLWMTFGLVVVLGGATIWFHNPTF
                     IKWKPSVLYWAMGLAFWFSQAIFHKNLLQTLIGEQLELPAAVWQRLNFAWVAFFGLMG
                     LLNLYVAYSYSTSTWASFKAFGATGLMLVFMLAQGFYLSRHLKPAADAPEPVRLDPAS
                     HPAGDS"
     gene            751..1017
                     /locus_tag="VF308_17015"
     CDS             751..1017
                     /locus_tag="VF308_17015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009550238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HEX7438406.1"
                     /translation="MSVSAAEIESALAVALQPESLAVQDDSHLHVGHAGAREGRHFSV
                     ALVSRRFEGLGRVARHRLVYDCLDALMGRGIHALAIDARAPGER"
     gene            1116..>1523
                     /locus_tag="VF308_17020"
     CDS             1116..>1523
                     /locus_tag="VF308_17020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX7438407.1"
                     /translation="MNNRFATTAIFVLAFSAALTAQAQNIAVVNGKAVPKARVDALMA
                     QITKQAAARGQQLPPDVDRLVRDKVVLDEMFIQEAEKRGLAASADYKQQMEIARENIL
                     VQALLADYEKKNPISDADVKAEYDKVKAQSGSTE"
BASE COUNT          243 a          543 c          473 g          264 t
ORIGIN      
        1 cccgccccga ccggcgaacg gttctgcatc aactcggccg cgatagactt cgcgccgccc
       61 acgagctgat gcgcaagcga tgaagctttt cttcgatttc ctgccggtca tccttttctt
      121 cggcaccttc aaggtcgccg aaggccgcgc cgacctcgcg gcgcggttcg ccagcgaaca
      181 cctcggcttt ctcgtctccg gcggcgtcgt cggcgccgcg gaagcgccgg tcctgctggc
      241 gacgctcgtc gtcatcctcg cgacgctgct gcaggtcgcc tttcaggtgg tgcgcggccg
      301 caaggtcgac ctgatgctgt ggatgacctt cggcctcgtc gtcgtgctcg gcggggcgac
      361 gatctggttc cacaatccga ccttcatcaa gtggaagccg agcgtgctct actgggcgat
      421 gggcctggcg ttctggttca gccaggcgat cttccacaag aacctgctgc agaccctgat
      481 cggcgaacag ctcgagttgc cggcggcggt gtggcagcgc ctgaacttcg cctgggtcgc
      541 gttcttcggc ctgatggggc tgctcaatct ctacgtcgct tacagctact cgacttcgac
      601 ctgggcgagc ttcaaggcct tcggggcgac cggcctgatg ctggttttca tgctggccca
      661 gggcttctac ctgagccgcc acctgaagcc cgccgccgac gcgccggagc ctgtgcgtct
      721 cgacccggcg tcccatccgg cgggcgattc atgagcgtgt cggctgcgga aatcgagtcc
      781 gccctcgccg tcgcgctgca gcccgagagc ctcgcggtgc aggacgacag ccacctgcac
      841 gtggggcacg cgggcgcgcg cgagggccgc catttcagcg tcgcgctcgt cagccgccgc
      901 ttcgaaggcc tgggccgcgt ggcgcgccac cgcctcgttt atgattgcct cgacgcgctc
      961 atgggccgtg gcatccacgc tctcgcgatc gacgcccgcg cgccgggcga gcgctgaacc
     1021 ggctcttcct ccaacccacg ccctgcgcag ccgagcgcac gcgatccgcg cgacactgca
     1081 tccttcccca ccctgcgatt ccgaaagacc gcttcatgaa caaccgtttc gccaccaccg
     1141 ccattttcgt gctggccttt tccgcggcgc tcacggcgca agcgcagaac atcgccgtcg
     1201 tcaacggcaa ggccgtgccc aaggctcgcg tcgacgcgct gatggcacag atcacgaagc
     1261 aggccgcggc gcgcggccag cagttgcccc ccgatgtcga tcgcctggtc cgagacaagg
     1321 tcgtgctcga cgaaatgttc atccaggaag ccgagaagcg cggcctcgcc gcatcggccg
     1381 actataagca gcagatggaa atcgcgcgcg agaacatcct cgtgcaggcg ctcctcgccg
     1441 actacgaaaa gaagaacccg atcagcgacg ccgacgtcaa ggccgaatac gacaaggtca
     1501 aggcgcagtc gggcagcacc gag
//
LOCUS       DASVHM010000926         2473 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_286247, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000926 DASVHM010000000
VERSION     DASVHM010000926.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286247"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..267
                     /locus_tag="VF308_17025"
     CDS             73..267
                     /locus_tag="VF308_17025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438408.1"
                     /translation="MASPEKKPFLLRIDPALWVEIERLAAAELRSVNAQVEYLLRDAV
                     QPRTKKRPPQVGPAGRKSDR"
     gene            complement(292..1080)
                     /gene="folE2"
                     /locus_tag="VF308_17030"
     CDS             complement(292..1080)
                     /gene="folE2"
                     /locus_tag="VF308_17030"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009855360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0035998 - 7,8-dihydroneopterin
                     3'-triphosphate biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase FolE2"
                     /protein_id="HEX7438409.1"
                     /translation="MSNLKDALHIPDTQGARDERHLAIQRVGVRAVRYPLQLRIGTAL
                     SPTVAEWDLDVALPADKKGTHMSRFVAWLDSLGGPLDGATLRSELGAMLARLGATEGR
                     VEARFPFFLRKRAPVSGVESLLEYQGRLIGETRSGATSIWIEVTVPVKSLCPCSKEIS
                     DYGAHNQRSHVTVRVEPLQEIGWPELVRFAEDSASSEIWAMLKRTDEKWITERAYENP
                     KFVEDMARDVALRLNADSRVGRYSVDIENFESIHAHSAVARIER"
     gene            complement(1208..>2473)
                     /gene="dxs"
                     /locus_tag="VF308_17035"
     CDS             complement(1208..>2473)
                     /gene="dxs"
                     /locus_tag="VF308_17035"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEX7438410.1"
                     /translation="PPLFELARRLEEHAKGMVVPGTIFEEFGFNYVGPIDGHDLDSLI
                     PTLENLRSLKGPQFLHVVTKKGYGYKLAEADPVLYHGPGKFNPAEGLVAPKTPPKTTF
                     TQVFGQWLCDMAAIDERLVGITPAMREGSGMVEFEKRFPKRYHDVGIAEQHAVTFAAG
                     LACEGLKPVVAIYSTFLQRGYDQLIHDVAIQNLPVVFALDRAGIVGADGPTHAGNYDI
                     AYLRCIPNMSILTPADENECRQALYTAFLQNHPCAVRYPRGHGAGVAVRSEMTAIPFG
                     KGEVRRQIKRPAAQPGQRIAILAFGTLLHPALAAAEQLDATVANMRFVKPLDVALVTE
                     LAASHDAIVTVEEGCIMGGAGSAVLEVLAAAQISTPVLALGLPDEFIEHGDPGKLLAL
                     LGLDGAGIEAAIRERFSPAPVLMRAAANH"
BASE COUNT          398 a          823 c          853 g          399 t
ORIGIN      
        1 gcgacgccgg tcgtcaacgc cggcacgctc tacaactgag gcgcgaggga gcgacgcgta
       61 aggccgccgc cgatggcaag cccggaaaag aagccgttcc tgctgcgcat cgacccggcg
      121 ctgtgggtcg agatcgagcg cctcgccgcc gccgaattgc gcagcgtcaa cgcccaggtc
      181 gagtacctgc tgcgggacgc ggtgcagccc aggacgaaga agcggccgcc gcaagtcggg
      241 cccgccgggc gcaagtccga ccgttgatca tcgccccgcc ccaatgaatc ttcagcgttc
      301 gatgcgtgcc accgcgctgt gggcgtggat cgactcgaag ttctctatgt cgaccgagta
      361 gcggccgacg cgcgaatcgg cattcaggcg cagcgccaca tcgcgcgcca tgtcctcgac
      421 gaacttcggg ttctcgtagg cgcgctcggt gatccacttc tcgtccgtgc gcttgagcat
      481 cgcccagatc tcgctcgagg ccgaatcctc ggcgaagcgc acgagttcgg gccagccgat
      541 ctcctgcaag ggttcgacgc ggaccgtcac gtgcgaacgc tggttgtggg cgccgtagtc
      601 ggagatctcc ttcgagcacg ggcagagcga cttgaccggc accgtgacct cgatccagat
      661 cgaggtcgcg cccgaccgcg tttcgccgat cagccggccc tggtattcga gcaggctctc
      721 gacgcccgaa accggcgcgc gcttgcgcag gaagaacgga aagcgcgcct cgacccggcc
      781 ttcggtggcg ccgaggcgcg ccagcatcgc ccccagctcg ctgcgcaggg tcgcgccatc
      841 gagcgggcca ccgagcgagt cgagccaagc gacgaaacgc gacatgtgcg tgcccttctt
      901 gtccgcgggc agcgcgacgt cgaggtccca ctccgcgacc gtcggagaca gcgccgtgcc
      961 gatgcgcagt tgcagcggat agcgcactgc gcgcacgccg acgcgctgga tcgcgagatg
     1021 gcgttcgtcg cgcgcgcctt gcgtgtcggg gatgtggaga gcgtctttca gattgctcat
     1081 gggttcttca tcgtgcgggg tcgcgctccg gggtcggcag cggagccttc attcttcacc
     1141 agatgcgaag gatgccagca aagccccgat cgcgctggaa agggcttggc gcgaggttcg
     1201 ggtggcttca atggttcgcc gcggcgcgca tcagcaccgg cgccggactg aagcgctcgc
     1261 ggatcgccgc ctcgatgccg gcgccatcca ggccgagcag cgccagcagc ttgcccgggt
     1321 cgccatgctc gatgaactcg tccggcaaac cgagcgcgag caccggcgtg gaaatctgcg
     1381 ccgcagccaa gacctcgagc accgcgctgc ccgctccgcc catgatgcat ccctcctcga
     1441 ccgtcacgat tgcatcatga ctggcggcga gctcagtcac cagcgcgaca tcgagcggct
     1501 tgacgaagcg catgttggcg accgtcgcgt cgagctgctc ggcggcggcg agcgccggat
     1561 gcagcaaggt gccgaaagcg aggatggcga tgcgctggcc gggctgtgcc gcgggccgct
     1621 tgatctggcg ccgcacctcg cccttgccga acgggatcgc ggtcatttcc gaccgcaccg
     1681 cgacgcccgc accgtggccg cgcggatagc gcacggcgca agggtggttc tgcaggaacg
     1741 cggtgtagag cgcctgccgg cattcgttct cgtcggccgg cgtgaggatg ctcatgttcg
     1801 gaatgcagcg caggtaggcg atgtcgtagt tgccggcgtg ggtcgggccg tcggcgccga
     1861 cgatgccggc gcggtcgagc gcgaagacca ccggcagatt ctggattgcg acatcgtgga
     1921 tcagctggtc gtagccgcgc tgcagaaagg tcgagtagat cgcgacgacg ggcttgagcc
     1981 cttcgcaggc cagcccggcc gcgaacgtga ccgcgtgctg ctcggcgatg ccgacgtcgt
     2041 ggtagcgctt cggaaagcgc ttctcgaact cgaccatgcc cgagccctcg cgcatcgccg
     2101 gcgtgatgcc gaccagacgc tcgtcgattg cggccatgtc gcacagccac tggccgaaga
     2161 cctgcgtgaa ggtggtcttg ggcggcgtct tcggcgcgac cagcccttcg gccggattga
     2221 acttgcccgg tccatggtag agcaccgggt cggcttcggc gagcttgtag ccgtagcctt
     2281 tcttcgtcac cacgtgcagg aactgcgggc ctttcaggct gcgcaggttc tcgagcgtcg
     2341 ggatcagcga gtcgaggtcg tgaccgtcga tcggaccgac gtagttgaag ccgaactcct
     2401 cgaagatcgt gcccggaacg accatgcctt tggcatgctc ctcgaggcgg cgcgccagtt
     2461 cgaagagcgg cgg
//
LOCUS       DASVHM010000927         2769 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_286580, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000927 DASVHM010000000
VERSION     DASVHM010000927.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2769
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286580"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..600
                     /locus_tag="VF308_17040"
     CDS             <1..600
                     /locus_tag="VF308_17040"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX7438411.1"
                     /translation="ADATVIAGSVTGGTAFAAGGTFIKLTPPLANPFGPPNSVGNDTF
                     QTPNLYAFDEDQNIVLAAPLDVDVGSGPLPIGTTVASHYVFFDPGPTQTMVATVTFDA
                     PVLAILTSTARLAASDFLANTGVNYLNPGLRGLEVGDLVTISGPNQITFATSASTPGD
                     YVRVLTAFSPAAAIAEPTTLLLLGIGMAAVGAAARRRKQ"
     gene            complement(638..949)
                     /locus_tag="VF308_17045"
     CDS             complement(638..949)
                     /locus_tag="VF308_17045"
                     /inference="COORDINATES: protein motif:HMM:NF022468.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2853 family protein"
                     /protein_id="HEX7438412.1"
                     /translation="MSDHLAAVKEHASNVNEAAVAAIVKYCGIALRGADSSLVSTSDP
                     KELATVRDGFAAKKLGLSAAAADEGIKSVVEKMKATRRKSRVAFYYLLAEATGTLGKL
                     G"
     gene            complement(1072..1533)
                     /locus_tag="VF308_17050"
     CDS             complement(1072..1533)
                     /locus_tag="VF308_17050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009521278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HEX7438413.1"
                     /translation="MSLQSVRAFLAERAPDIEILEATTSTATVALAAAAHGVEPARIA
                     KTLSLRLNGDVILLVMGGEARLDNRKYKDRFAAKAKMLDAAEVLEATSHPVGGVCPFG
                     LPRSLRVYADVSLRRFDVVVPAAGDTHHALRIAPERLVQLADAEWVDVAQA"
     gene            complement(1537..>2769)
                     /locus_tag="VF308_17055"
     CDS             complement(1537..>2769)
                     /locus_tag="VF308_17055"
                     /inference="COORDINATES: protein motif:HMM:NF021508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2235 domain-containing protein"
                     /protein_id="HEX7438414.1"
                     /translation="DFHKATNVRLHFLGVWDTVEALGIGELEVAGVKLSNAQVPFVRR
                     HTMHHAAAALPANVQRGRHALAGHELRRKFEPLLWDAPLEGQDLKQVWFAGAHADVGG
                     GYQETHLSDLALWWMADEVDDVGAETPEQIRFSKLPGKPDPEPTLLPHHALQGDFFWA
                     DPAPRHAMVNFGSLDPAVRATLSLHPSMVSRLFDSTATTYESYSFVKDYEWTARLPGG
                     KTYPGDVAGALSWLDDLSVQMHVAGLEAGPAGVGASSPSGRRPAWHSVSSVAELRLAE
                     EYVLRQARSISRWPREVARLEDALAVLVVCGRETALSRFIEAVEASSARLVRVAARSR
                     RCGAQVHRRRLPIFDDLYRAADGLREQGLPQYVRKVDDLVGRIGEAKRRLQSSLPVPI
                     MKTLKLPERPPSAPESPT"
BASE COUNT          448 a          959 c          926 g          436 t
ORIGIN      
        1 gctgacgcaa cggtcattgc cggcagcgtc accggcggga cggctttcgc ggcgggcggc
       61 acgttcatca agctcacgcc gccgttggca aacccgttcg gcccgcccaa cagcgtgggc
      121 aacgacacgt tccagactcc caatctctac gcgttcgacg aggaccagaa catcgtgctc
      181 gcggccccgc tcgacgtcga cgtcggcagc gggccccttc cgatcggcac gaccgtggca
      241 agccactacg tgttcttcga tccgggtccg acgcagacga tggtcgccac ggtgacgttc
      301 gatgcccccg tgctcgccat cctgacatcg acggcccgcc tggccgccag cgacttcctc
      361 gccaataccg gtgtcaacta cctcaacccg ggcttgcgcg ggctggaggt cggcgacctg
      421 gtcacgatca gcggtccgaa tcagatcacg ttcgcaacct cggcgagcac gcccggcgac
      481 tacgtccgcg tgctcaccgc gttctcgccc gctgccgcca ttgccgagcc gacgactctg
      541 ctcctgctgg gcatcggcat ggccgcggtg ggggcggcgg cgcggcgcag aaagcagtag
      601 tcgaagccct ggcgcagcat gcgcgctggt gcagcgccta gccgagcttg ccgagcgttc
      661 ctgtcgcctc ggcgaggagg tagtagaacg ccacgcgact cttgcgcctc gtggctttca
      721 tcttctcgac caccgacttg atgccctcgt cggcggccgc tgcggaaagg ccgagcttct
      781 tggctgcaaa gccgtcgcga accgtggcca gttccttggg atcggacgtg gacacgagag
      841 aggaatcggc cccgcgcagg gcgatcccgc aatacttgac gatcgcagcg acggccgctt
      901 cgttcacgtt ggaagcgtgc tccttgacgg cggcgagatg gtcgctcata cgacgctcct
      961 ggtaagcgca gagcattctg cgcaagtcat cttcgcaccg cgaacacccc gctgcaaccg
     1021 cgaaccttct gcgccgactc gactttgcgc gtcggttgat ccagaacaag ctcaggcttg
     1081 cgcgacgtcg acccattccg cgtcggcgag ctgaaccagc cgctccggcg cgatgcgaag
     1141 cgcgtggtgc gtgtcgccgg ccgccggcac gacgacgtcg aatcggcgca gcgacacgtc
     1201 ggcgtagacg cgcaacgacc gcggcagccc gaacgggcag acgccaccga ccggatggct
     1261 ggtcgcctcg agcacctccg ccgcgtcgag catcttggcc ttggcggcga agcgatcctt
     1321 gtacttgcgg ttgtcgaggc gcgcctcgcc gcccatcacg agcaggatga cgtcgccgtt
     1381 cagccgcagc gacagcgtct tggcgatccg cgccggctcg acgccgtgcg ccgccgcggc
     1441 gagcgcgacc gtcgcggtgc tcgtcgtcgc ctcgaggatc tcgatgtcgg gagcgcgctc
     1501 ggcgaggaag gcgcggacgg attggaggct catggttcag gtgggagatt caggcgccga
     1561 cggcggcctt tcggggagct tcaaggtctt catgatcgga acggggagac tcgattgaag
     1621 tcgacgcttg gcctccccta ttctgccgac gaggtcgtcg accttgcgca cgtactgagg
     1681 caggccctgc tcccgcagcc cgtcagccgc gcgatacagg tcgtcgaaga tcggcagacg
     1741 acgtcgatgc acctgcgcgc cgcatcggcg cgatcgcgcc gcgacgcgaa cgagcctggc
     1801 cgaagaggcc tcgacggctt cgatgaatcg gctcagtgcc gtttcgcggc cgcagacgac
     1861 gaggacggcg agtgcgtctt cgagccgagc gacttcgcgc ggccaccggg agatcgagcg
     1921 tgcctggcgc aagacgtact cttcggccag ccgcagctcg gcgacggagc tgaccgagtg
     1981 ccaggcggga cgtcgccccg agggcgacga cgcgccgacg cctgcggggc ccgcctcgag
     2041 cccggcgaca tgcatctgca ccgacagatc gtccagccac gagagcgcgc cggcgacatc
     2101 gcccggatag gtcttgccgc ctggaaggcg cgccgtccat tcgtagtcct tgacgaagga
     2161 atagctctcg tacgtggtcg cggtggaatc gaagagacgg ctcaccatcg agggatgcag
     2221 cgacagggtc gccctcaccg ccggatccag tgaaccgaag ttcaccatcg catgacgcgg
     2281 cgccgggtcg gcccagaaga agtcgccctg cagcgcgtgg tggggcagca gcgtcggctc
     2341 gggatcgggc ttgcccggca gcttgctgaa acggatctgc tccggcgttt ccgcaccgac
     2401 gtcgtcgact tcatcggcca tccaccacaa ggccaggtcc gagaggtgcg tctcctggta
     2461 gccgccaccg acgtcggcgt gggcgccggc gaaccagacc tgcttgagat cctggccttc
     2521 caggggcgcg tcccacagca gcggctcgaa cttccgccgc agctcatggc cggccagcgc
     2581 atgccggccc cgctgcacgt tcgcaggcag ggcagctgcg gcgtggtgca tcgtgtggcg
     2641 gcgaacgaac gggacctgcg cgttgctgag cttgacgccc gccacctcga gctcgccgat
     2701 gccgagcgcc tccacggtgt cccagacacc gaggaagtgc agcctgacgt tcgtcgcctt
     2761 gtggaagtc
//
LOCUS       DASVHM010000928         1906 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_143715, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000928 DASVHM010000000
VERSION     DASVHM010000928.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1906
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143715"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1242)
                     /locus_tag="VF308_17060"
     CDS             complement(<1..1242)
                     /locus_tag="VF308_17060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438415.1"
                     /translation="MDMQAKHQDQLIFHLTGKLQSGRGDGLSAIDGLDLRPALLAPYR
                     DLGALRHDFPVVLVERASATEFARPLSSLVDAVLKDVAPRGIEGERLRRHALQLEREI
                     RRAVDEGATGTLAELWDMAAARLGAREGETLEQVLSHAGGALRADGVLLGCSHDMPAR
                     LITHAWQAAQRAKARQFHADLSRLVLKLSDVLRAAFSHSQAGRQPQSLKESVGGPHQD
                     VFDFDALSRIVGKGVPRDELPAARRERLLHTLGVLESQRFFAPAEDATPADTGEYFDF
                     VFDNCAAAAQAFARRLAEVAELVKALSIAELEERGRYVEAEHDLFFDAFDENSLSADD
                     LARFPDYLVCIPPDRNDAPENANLMEMLSSGLPVKVLVQTSDLLEEASIGTGHFAFGV
                     RSARLATTAMGLGGMFVLQSPS"
     gene            complement(1289..>1906)
                     /locus_tag="VF308_17065"
     CDS             complement(1289..>1906)
                     /locus_tag="VF308_17065"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEX7438416.1"
                     /translation="MNITVVLHDNHVYGLTKKQASPTSPRGFKSNTTPYGATLEPMNP
                     LTVTLGVRGASFVAQAVDWIPEVLYDIMRAAFKHRGFSFVRILQRCPEFMPKAFDPWL
                     HDPQKTMLLTHPDGLQLSPSLSSAYRNQREHDPLNIDRAREIASLDDPIPVGILYRNP
                     DAPCYEDLRHAGQLRSPEYIRAGLNRELDKYTVWPDDGAETRRAA"
BASE COUNT          275 a          620 c          693 g          318 t
ORIGIN      
        1 actcggcgac tgcagcacga acatgccgcc caggcccatc gccgtggtgg cgaggcgcgc
       61 gctgcgtacg ccgaaggcaa agtgaccggt gccgatggac gcttcctcga gcaggtcgga
      121 ggtctgcacc agcaccttca ccggcaagcc ggaagacagc atctccatca ggttggcgtt
      181 ctccggcgcg tcgttgcgat cgggcgggat gcagaccagg tagtcgggaa agcgcgccag
      241 atcgtcggcg ctgagcgagt tctcgtcgaa agcgtcgaag aacaggtcgt gttcggcttc
      301 gacatagcgg ccgcgttctt ccagctcggc gatcgacagc gctttcacca gttcggccac
      361 ttcggcgagg cgtcgggcga aggcctgcgc cgctgccgcg cagttgtcga acacgaaatc
      421 gaaatattcg ccggtgtccg ccggtgtcgc atcttcggcg ggtgcgaaga agcgctgcga
      481 ctcgagcacg cccagcgtgt gcagcagccg ctcgcgccgc gcggcgggca gctcgtcgcg
      541 cggcacaccc ttgccgacga tgcgcgacag ggcgtcgaag tcgaacacgt cctggtgcgg
      601 gccgccgacc gattccttca ggctctgcgg ctgccggccg gcctgcgagt ggctgaatgc
      661 cgcgcgcagg acgtcggaca gtttcagcac gagccggctc aggtcggcgt ggaattggcg
      721 cgccttggcg cgctgcgcgg cttgccaggc gtgcgtgatc aggcgcgccg gcatgtcgtg
      781 cgagcagccc agcaacacgc cgtcggcgcg cagtgcgccg cctgcatggc tgagcacctg
      841 ctccagcgtt tcgccctcgc gcgcgccgag ccgcgccgcc gccatgtccc acaactcggc
      901 cagtgtgccg gtggcgcctt cgtccacggc tcggcggatt tcgcgctcga gctgcaaggc
      961 atggcggcgc aggcgctcgc cttcgatgcc gcgcggcgcc acgtccttca gcaccgcgtc
     1021 gaccaggctg gacagcggcc gggcgaactc ggtcgcgctg gcgcgctcca ccagcaccac
     1081 cgggaagtcg tggcgcagcg cgcccaggtc gcggtacggc gccagcagtg cggggcgcag
     1141 gtcgaggccg tcgatcgcgc tcaggccatc gccacggcca ctttgtagct tgccggtgag
     1201 gtgaaagatc aactggtcct ggtgcttggc ttgcatgtcc atcacacgtt ctcgttctgg
     1261 gtttgccggg tcggtgcgga ccggcgcttc aggccgcgcg ccgcgtctcg gccccgtcgt
     1321 ccggccacac ggtgtacttg tccagctcgc ggttcaggcc ggcgcggatg tactcgggcg
     1381 aacgcaactg gccggcatgg cgcagatctt cgtagcaggg ggcgtcggga ttgcggtaga
     1441 ggatgccgac cgggatcggg tcgtcgagcg aggcgatctc gcgcgcgcgg tcgatgttca
     1501 gcgggtcgtg ctcgcgctgg ttgcggtagg cgctcgacag actcgggctc agctgcaggc
     1561 cgtcggggtg cgtcagcagc atcgtcttct gcgggtcgtg cagccacggg tcgaaggcct
     1621 tgggcatgaa ctcggggcag cgctggagga tgcgcacgaa cgagaagccg cggtgcttga
     1681 acgccgcgcg catgatgtcg tacagcacct cgggtatcca gtcgacggcc tgcgcgacga
     1741 acgaggcgcc gcggactccg agcgtcacgg tcagcgggtt catcggctcg agggtcgcgc
     1801 cgtagggcgt ggtgttgctc ttgaagccgc gcggcgaggt cggcgaggcc tgcttcttgg
     1861 tcaggccgta gacgtggttg tcgtgcagca cgacggtaat gttcat
//
LOCUS       DASVHM010000929         2199 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_69547, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000929 DASVHM010000000
VERSION     DASVHM010000929.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2199
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69547"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1359)
                     /gene="zwf"
                     /locus_tag="VF308_17070"
     CDS             complement(<1..1359)
                     /gene="zwf"
                     /locus_tag="VF308_17070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012207397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEX7438417.1"
                     /translation="MSFDLVFFGGTGDLTWRSLMPALFQAFRHGKLPAGGRILAVSRQ
                     DLGDGAYRAWLKGRFREVEGAKRPSDDEFARFAGSVHYRSMDLADPGHYARLKAWLAE
                     RDADVVVMYLATAPDLFPIICAELGAAGLNGPRVRVVLEKPLGHDLASAQDINRVVRS
                     VFSEEQAYRIDHYLGKPSVQNLMALRFGNALFEPLWRRECIANIQITLAEAIGVGTRG
                     DFYSGTGALRDMIQNHALQLLTMVAMEPPSRHEADAIRDEKLKVLRSLKPFTVENVAR
                     DVVRGQYRAGSIEGGPAAGFLDEANVPAASHCETFVALRTEVRNWRWAGVPFYLRTGK
                     RLAARDAQIVVNFRPAPHSIFPGPNQPNKLVIKLQPGDGLELHLLAAKGSSQAEALAP
                     VSLDLDFDKAFAANRVGAYERLLLDVIAGRLNLFVRSDEQEEAWRWVEPILEAWRDDS
                     TGP"
     gene            1489..>2199
                     /locus_tag="VF308_17075"
     CDS             1489..>2199
                     /locus_tag="VF308_17075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7438418.1"
                     /translation="MADQGQVNVICSVQADWCNMIQTVFAKSTGIKVNMSLKGSGEAL
                     AQLIAEKANPKTDVWFGGTGDPHLQAAEQDLTIEYKSASLAQLHAWAQQQARQSGYKT
                     VGIYSGPLGFGYNSELIAKKKLPVPRSWADLLKPEYKGEIQVANPASSGTAYTMVATL
                     VQLMGEDKAFDYLKALHKNVSQYTRSGTGPIKAVARGETAVSISFVHDGPGEKLQGFP
                     VETVTPSEGTGAEIGSMSI"
BASE COUNT          377 a          713 c          784 g          325 t
ORIGIN      
        1 cggcccggtc gaatcgtcgc gccaggcctc gaggatcggc tcgacccagc gccaggcctc
       61 ttcctgctcg tcgctgcgca cgaagaggtt gaggcggccg gcgatcacgt cgagcagcag
      121 ccgctcgtag gcgccgacgc ggttcgcggc gaaggccttg tcgaagtcga ggtcgagcga
      181 caccggcgcg agcgcttcgg cctggctgct gcccttcgcg gcgagcaggt gcagttcgag
      241 cccgtctccc ggttgcagct tgatgacgag cttgttcggc tgattcgggc cgggaaagat
      301 gctgtgcggg gccgggcgga agttgacgac gatctgcgcg tcgcgcgcgg ccaggcgctt
      361 gccggtgcgc aggtagaagg gcacgcccgc ccagcgccag ttgcgcactt cggtgcgcag
      421 ggcgacgaag gtctcgcaat ggctcgccgc gggcacgttc gcctcgtcga gaaagcccgc
      481 tgccgggccg ccctcgatgc tgccagcgcg gtactgaccg cgcaccacgt cgcgcgcgac
      541 gttctcgacc gtgaagggct tgagcgagcg cagcaccttg agcttctcgt cgcggatcgc
      601 atcggcctcg tggcgcgaag gcggctccat cgcgaccatc gtcagcagtt gcagcgcatg
      661 gttctggatc atgtcgcgga gcgcgccggt gccgctgtag aagtcgccgc gcgtgccgac
      721 gccgatcgcc tcggccagcg tgatctggat gttggcgatg cattcgcggc gccagagcgg
      781 ctcgaacagc gcattgccga agcgcagcgc catcaggttc tggaccgacg gcttgcccag
      841 gtaatggtcg atccgatagg cctgctcttc gctgaagacc gagcgcacga cacggttgat
      901 gtcctgcgcg ctggcgaggt cgtggccgag cggcttttcg agaacgacgc gcacacgcgg
      961 tccgttcagg cccgccgcgc cgagctccgc acagatgatt ggaaagaggt cgggcgcggt
     1021 cgcgaggtac atcacgacca cgtcggcgtc gcgttcggcg agccaggcct tcaggcgcgc
     1081 gtagtggccc ggatcggcga gatccatcga acggtagtgg accgacccgg cgaagcgggc
     1141 gaactcgtcg tcgctcgggc gcttggcgcc ttcgacctcc cggaaccgcc ccttcagcca
     1201 ggcccggtag gccccgtcgc ccaggtcctg gcgcgagacc gcgaggatgc ggccgcccgc
     1261 gggcagcttg ccgtgccgga acgcctggaa cagcgccggc atcaggctgc gccacgtcag
     1321 gtcgccggtg ccgccgaaga agacgaggtc gaatgacatg ccggacagga tacgatgctt
     1381 tgcaaacaac gccgggtgtg cacacgcagg cggtcgaacg gggagacgca catgacgacc
     1441 agacgatggg ccgtgctcgc cgccgcgagc gcgttcgcgg gcgcggcgat ggccgatcag
     1501 ggccaggtga acgtgatctg ctcggtgcag gccgactggt gcaacatgat ccagaccgtg
     1561 ttcgcgaagt cgaccggcat caaggtcaac atgtcgctga aaggctcggg cgaagcgctg
     1621 gcgcagctga tcgccgagaa agcgaatccg aagaccgacg tctggttcgg tggcaccgga
     1681 gacccgcact tgcaggccgc cgagcaggat ctgacgatcg aatacaagtc ggcgagcctg
     1741 gcgcagctgc atgcctgggc ccagcagcag gcccggcagt cgggctacaa gacggtgggc
     1801 atctactcgg ggccgctcgg cttcggctac aacagcgagc tcatcgcgaa gaagaagctg
     1861 cccgtgccga gaagctgggc cgacctgctc aagcccgagt acaagggcga gatccaggtc
     1921 gcgaatccgg cttcgagcgg caccgcctac acgatggtcg cgacgctggt gcagctgatg
     1981 ggcgaggaca aggccttcga ctacctgaag gcgctgcaca agaacgtgag ccagtacacg
     2041 cgttcgggca ccggcccgat caaggcggtc gcgcgcggcg agaccgcggt ctcgatcagt
     2101 ttcgtgcacg acggcccggg cgaaaagctc cagggctttc cggtcgagac cgtgacgccg
     2161 tccgaaggca cgggcgccga gatcggctcg atgagcatc
//
LOCUS       DASVHM010000930         7226 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_503361, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000930 DASVHM010000000
VERSION     DASVHM010000930.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 7226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7226
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_503361"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..812)
                     /locus_tag="VF308_17080"
     CDS             complement(<1..812)
                     /locus_tag="VF308_17080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtB"
                     /protein_id="HEX7438419.1"
                     /translation="MTARVLLFSAWVLILSFLPASAFALTPEQALAIAAGENDSRIAA
                     LNAAVARGDERLAAFVQALLDDEVKVAGDKVFIVHDGKSIDAASGAAATLPEGTEDVT
                     NNNRTRGALESALAGLRVLSPDVAVRRGAVDELAKTSLDESQLPLVEKAYAAETDPGL
                     KGQLERMRSTILVSSSDRTKRLAAATELASSNQSAVASLLQERLAPGGESDAEVRAAL
                     QQSLASVRARLAWGERLAVVFTGVSLGSVLLLVALGLAITYGLMGVINMAHG"
     gene            complement(906..2171)
                     /gene="urtA"
                     /locus_tag="VF308_17085"
     CDS             complement(906..2171)
                     /gene="urtA"
                     /locus_tag="VF308_17085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033219 - urea binding [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter substrate-binding protein"
                     /protein_id="HEX7438420.1"
                     /translation="MKRRFALKAAWAALAASGLFSFPALAADTIKVGILHSLSGTMAI
                     SETVLKDVALMTIDEINAKGGVLGKQLEPVVVDPASNWPLFAEKAKQLIAQDKVAVVF
                     GCWTSVSRKSVLPVFEEANSLLFYPVQYEGEELSKNVFYTGAAPNQQAIPAVEYLMSK
                     DGGSAKRFVLLGTDYVYPRTTNKILRSFLHSKGIKDEDIMEEYTPFGHSDYQTIIGKI
                     KKFAAEGKKTAVVSTINGDANVPFYKELGNQKISAEDIPVVAFSVGEEELSGLDAKPL
                     VGHLAAWNYFESIKNPTNTAFIKEWTDYAKAKSIPGHKDKALTNDPMEATYIGIHMWA
                     QAVEKAKSTDPDKVIAAMAGQTFKAPGGFTSTMDAKNHHLHKPVFIGEIKSDGQFNVV
                     WKTPGPVKAQPWSPFIPENKGKKDEPEKK"
     gene            complement(2359..2781)
                     /locus_tag="VF308_17090"
     CDS             complement(2359..2781)
                     /locus_tag="VF308_17090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX7438421.1"
                     /translation="MPDDGVSLPPPHAGVAKPLPPQRLCAGADLAEKGRAVLFDVVHF
                     REPARAFALRFDGRVVAYLNRCVHVPTELDWQPGEFLDAGREFIICAIHGASYAPHSG
                     RCIGGPCGHGRLLPIETFERGDDVWWQPTRDTRPPFPD"
     gene            complement(2774..3436)
                     /locus_tag="VF308_17095"
     CDS             complement(2774..3436)
                     /locus_tag="VF308_17095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEX7438422.1"
                     /translation="MKTRRRFDLIVFDWDGTLFDSTRLIARCIQSACADVGTAVPSDR
                     DASFVIGLGLGDALRHAAPDFPRERYGELAERYRHHYLANQDEIVLFDGTLEMLLALK
                     ARNHWLAVATGKTRRGLDQALAGSPLVGLFDATRTADETRGKPDPLMLVELMRELGAA
                     ADRTLMVGDTTHDLQLAANAGCASVAVSFGAHEHDAFASHAPLHVAHSTADLARWLDA
                     HA"
     gene            complement(3502..4080)
                     /locus_tag="VF308_17100"
     CDS             complement(3502..4080)
                     /locus_tag="VF308_17100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009890687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSC84-related protein"
                     /protein_id="HEX7438423.1"
                     /translation="MKTKLLAIASAAALAVGAITGCSTTTTAPGGSDPIAKRQSIDAS
                     VDSALARLYAQDPSSRELIGKARGVLVFPSIVSAGLVVGGSYGQGALRVRGRTSEYYS
                     TAAGSVGLLAGAESKAVFLLFMTDESLDKFRASKGWTVGADASVTLVNVGANASVDTK
                     TAQQAIIGYVLTNGGLMANVSLEGTKITPLAI"
     gene            complement(4225..5178)
                     /locus_tag="VF308_17105"
     CDS             complement(4225..5178)
                     /locus_tag="VF308_17105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019559730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEX7438424.1"
                     /translation="MRNVRIDSGSDGQRLDNFLAKILKGVPRTHLYRVIRSGEVRVNK
                     GRAAADTRLALGDEVRIPPMRVADRSGRPEAPGREFAIVHEDEAIVCIDKPAGVAVHG
                     GSGESFGVIEQMRRARPGEFLELVHRLDKETSGLLLVAKTRPALVKLQNDLRSRAPGR
                     AIGKTYAALVVGAWPESLKVIDVALRKDTTADGSRHVRTVDADDERGRRSISLVRVTR
                     RFAGFSLLDVTLKTGRTHQIRVHLADAGHAIAGDPKYGDFTLNRALARGQLVAPLRFD
                     RMFLHARRLRFVHPASGEPIELEAPLPAACEALLEALAPAA"
     gene            5758..>7226
                     /locus_tag="VF308_17110"
     CDS             5758..>7226
                     /locus_tag="VF308_17110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HEX7438425.1"
                     /translation="MKRMLINATQPEERRLAIVDGQKLMDFETEIEGREQRKGNIYKA
                     VVTRVEPSLEACFVDYGEDRHGFLPFKEISKNYFREGTDARTARIQDAIKEGDNLLVQ
                     VEKEERGNKGAALTTFVSLAGRYLVLMPNNPRGGGVSRRIEGEDREELKENLDQLEYP
                     KGMSLIARTAGIGRTAPELQWDLNYMLKLWTAIDGASKAGKGAFLIYQESSLVIRAIR
                     DYFTADVGEILIDTDDIYDQAQQFMAHVMPETAHKVKRYRDDAALFSRFQIEHQIETA
                     FARTVNLPSGGAIVIDHTEALVSVDVNSARSTRGSDIEETATRTNLEAADEIARQMRL
                     RDLGGLIVVDFIDMEESKNRREVETRLRDALRSDRARVQFSSISKFGLLEMSRQRLRP
                     ALSEGSHITCPRCNGTGHIRDTESSALQILRMVQEESMKDNTAAVHVQVPVEVTSFLL
                     NEKRTEITKIELKQRVTVLLVPNKNLETPNYRLERLRHD"
BASE COUNT         1150 a         2412 c         2530 g         1134 t
ORIGIN      
        1 tcgccgtgcg ccatgttgat cacgcccatc aggccgtacg tgatcgccag cccgagggcg
       61 acgaggagca ggaccgagcc gaggctcacg ccggtgaaga cgacggcgag gcgctcgccc
      121 caggcgagac gcgcacgcac cgaggcgagc gactgctgca acgcggcgcg cacctcggcg
      181 tcgctctcgc cgccgggcgc gagacgctcc tgcagcaggc tggcgacggc gctctggttg
      241 ctgctcgcga gctcggtggc ggcggcgagg cgcttcgtgc ggtcggacga ggagaccagg
      301 atcgtcgaac gcatccgctc gagctggccc ttcagcccgg gatcggtctc ggcggcgtag
      361 gccttctcga ccagcggcag ctgcgactcg tcgagcgagg tcttggcgag ctcgtcgacc
      421 gcgccgcggc ggacggcgac gtcgggcgag aggacgcgca ggccagcgag cgccgattcg
      481 agcgcgccgc gggtgcggtt gttgttggtg acgtcctcgg tgccttcggg aagcgtagcg
      541 gcggcgccgc tcgcggcgtc gatcgacttg ccgtcgtgga cgatgaagac cttgtcgccg
      601 gcgaccttga cctcgtcatc gagcagggcc tggacgaagg cggcgaggcg ctcgtcgccg
      661 cgcgccaccg ccgcgttgag cgcggcgatg cgcgaatcgt tctcgccggc ggcgatcgcc
      721 agcgcctgct ccggagtgag cgcgaaggcg ctcgccggca gaaacgaaag gatcagcacc
      781 cacgccgaga aaagaagaac acgggctgtc atcctgagcg aagcgaagga tcccgggccc
      841 ccggccttcg agatccttcg cttcgctcag gatgacattc gaggggcgcc tgcgcccccc
      901 aaatgtcact tcttctcggg ctcgtccttc ttgcccttgt tctcggggat gaacgggctc
      961 cacggctggg ccttgaccgg gcccggcgtc ttccagacga cattgaactg gccgtcgctc
     1021 ttgatctctc cgatgaagac cggcttgtgg aggtggtggt tcttcgcgtc catcgtcgac
     1081 gtgaagccgc ccggcgcctt gaaggtctgg ccggccatcg ccgcgatcac cttgtccgga
     1141 tcggtcgact tggccttctc gaccgcctgc gcccacatgt ggatgccgat gtaggtggcc
     1201 tccatcgggt cgttggtgag cgccttgtcc ttgtggccag gaatgctctt ggccttggcg
     1261 tagtcggtcc actccttgat gaacgccgtg ttggtcgggt tcttgatcga ctcgaagtag
     1321 ttccacgccg ccaggtggcc gacgagcggc ttcgcatcca ggcctgaaag ctcctcctcg
     1381 ccgaccgaga acgccacgac cggaatgtcc tccgcggaga tcttctggtt gcccagctcc
     1441 ttgtagaagg gcacgttggc gtcgccgttg atcgtcgaga cgaccgccgt cttcttgcct
     1501 tcggcggcga acttcttgat cttgccgatg atggtctggt agtcggagtg gccgaacggc
     1561 gtgtactcct ccatgatgtc ctcgtccttg atgcccttac tgtgcaggaa ggaacgcagg
     1621 atcttgttgg tcgtgcgcgg atagacgtag tcggtgccga gcagcacgaa gcgcttggcc
     1681 gagccgccgt ccttgctcat caggtactcg accgcgggaa tcgcctgctg gttcggcgcc
     1741 gcccccgtgt agaacacgtt cttcgacagc tcttcgcctt cgtactggac cggatagaag
     1801 agcaggctgt tggcttcctc gaacaccggc agcaccgact tgcgcgagac gctggtccag
     1861 cagccgaaga cgacggcgac cttgtcctgg gcgatcagct gctttgcctt ctcggcgaac
     1921 agcggccagt tcgacgccgg gtcgacgacg acgggctcga gctgcttgcc gagcacgccg
     1981 cccttggcgt tgatctcgtc gatcgtcatc agggcgacgt ccttgaggac ggtctccgag
     2041 atggccatcg ttcccgacag cgaatgaaga atgccgacct tgatggtgtc ggcggcgagg
     2101 gcagggaacg agaagaggcc tgaggcagcg agagctgccc aggcggcttt gagcgcgaag
     2161 cggcgtttca tggggatggg acctcctggt tgtcgggatg gcgtgcttgc cggcacggcg
     2221 aactcgagtt cgtcggaacc ctggtctgca aggcctgtgc catcgccgcg gaaggcggat
     2281 gccgcgtctt cgcaccaagc gaaggcggct ttcgcaccaa catggcccga cgcacgcgtc
     2341 ggtgcgcagg gctcgatctc agtcgggaaa tggcggacgt gtgtcgcggg tcggctgcca
     2401 ccagacgtcg tcgccgcgct cgaacgtctc gatcggcagc aaccgtccat ggccgcacgg
     2461 gccgccgatg cagcggccgc tgtgcggcgc gtagctcgcg ccgtggatcg cgcagatgat
     2521 gaactcgcga ccggcgtcga ggaactcccc gggttgccag tcgagctcgg tcggcacgtg
     2581 cacgcaccgg ttcaggtagg cgacgacgcg gccgtcgaag cgcagcgcga aggcgcgcgc
     2641 cggctcgcgg aagtggacca cgtcgaagag gacggcgcgg cctttctcgg cgaggtcggc
     2701 gccggcgcag aggcgctgcg gcggcaaggg cttcgcaaca cccgcatgcg gcggcggcaa
     2761 cgatacgccg tcgtcaggca tgggcgtcga gccagcgcgc caggtcggcg gtcgagtggg
     2821 cgacatgcag cggcgcgtgg ctcgcaaacg catcgtgctc gtgcgcgccg aagctcaccg
     2881 cgacgctcgc gcagccggcg ttggcggcga gctggaggtc gtgcgtcgtg tcgccgacca
     2941 tcagcgtccg gtcggcggcc gcgccgagct cgcgcatcag ctcgaccagc atcagcggat
     3001 cgggcttgcc gcgcgtctcg tcggcggtgc gggtggcgtc gaacaggccg acgaggggcg
     3061 agccggcgag ggcctggtcg agaccgcgcc gcgtcttgcc ggtggcgacg gcaagccagt
     3121 gattgcgcgc cttcagcgcg agcagcatct cgagcgtacc gtcgaagagg acgatctcgt
     3181 cctggttcgc gagatagtgg tggcgatagc gctcggcgag ctcgccgtag cgctcgcgcg
     3241 ggaagtcggg cgcggcgtgg cgcagcgcgt cgccgaggcc gaggccgatg acgaagctcg
     3301 cgtcgcggtc gctcggcacc gcggtgccga cgtcggcgca cgccgactgg atgcagcgcg
     3361 cgatcagccg cgtcgagtcg aacagcgtgc cgtcccagtc gaagacgatg agatcgaagc
     3421 ggcggcgcgt cttcatggac gcccgcgatg ttgcgccgtg ccggcgccgc cgcccatccc
     3481 ggattacacc gggagccgcg ctcagatcgc cagcggcgtg atcttcgtgc cctcgaggct
     3541 gacgttggcc atcaggccgc cgttggtgag gacgtagccg atgatcgcct gctgcgcggt
     3601 cttggtgtcg accgacgcat tggcgccgac gttgaccagc gtcaccgacg cgtcggcgcc
     3661 gaccgtccag cccttgctgg ccctgaactt gtcgagcgac tcgtctgtca tgaacagcag
     3721 gaacacggcc ttcgattcgg cgccggcgag caggccgacc gatccggcgg cggtgctgta
     3781 gtactcggag gtgcggccgc ggacgcgcag cgcgccctga ccgtaggagc cgccgacgac
     3841 aaggccggcc gagacgatcg acgggaagac gaggacgccg cgcgccttgc cgatcagctc
     3901 gcgcgacgac gggtcctgcg catacaggcg cgccagggcg ctgtcgacgc tggcgtcgat
     3961 gctctgccgc ttggcgatcg gatcgctgcc gcccggggca gtggtggtcg tcgagcagcc
     4021 ggtgatggcg ccgaccgcga gggcggcggc ggaggcgatg gcgaggagct tggtcttcat
     4081 ggtgggattc cttttcgggg ttcgcgtcgc cgtacaaaac gcacccgagc tcggggcgga
     4141 caggcaacga ctgatcgcat tggagccttg ccgccccccc ggcgcaggcg gacgatgccg
     4201 ggctgtggcg taggaatcgg ccgctcacgc ggccggcgcg agcgcctcga ggagcgcttc
     4261 gcacgccgcc ggcagcggcg cttcgagctc gatcggctcg ccgctcgcgg gatggacgaa
     4321 gcgcaggcgc cgggcgtgca ggaacatgcg atcgaagcgg agcggcgcga cgagctggcc
     4381 gcgcgcgagc gcccggttga gggtgaaatc gccgtacttc ggatcgccgg cgatcgcgtg
     4441 ccctgcatcg gcgaggtgga cccggatctg gtgcgtgcgg ccggtcttga gcgtcacgtc
     4501 gagcaggctg aagccggcga agcgccgggt gacgcgcacc aggctgatcg agcgccggcc
     4561 gcgctcgtcg tcggcatcga cggttcggac gtggcgactg ccgtcggcgg tcgtgtcctt
     4621 gcgcaaagcg acgtcaatca ccttgagcga ttccggccag gcgccgacaa cgagcgcggc
     4681 gtaggtcttg ccgatcgcgc ggcccggcgc gcgcgagcgc aggtcgttct gcagcttgac
     4741 cagggccggc cgcgtcttgg cgacgaggag aaggcccgag gtctccttgt cgaggcgatg
     4801 gacgagctcg aggaattcgc ccggccgggc gcgccgcatc tgctcgatca cgccgaagct
     4861 ctcgccgctg ccgccgtgaa cggcgacgcc ggccggcttg tcgatgcaga cgatcgcctc
     4921 gtcctcgtgg acgatggcga attcgcggcc gggagcttcc ggccgcccgc tgcgatcggc
     4981 gacacgcatc ggcgggatcc ggacctcgtc gccgagcgcc aatcgcgtgt cggccgccgc
     5041 cctgccctta ttgacgcgga cttcgcccga gcggatgacg cggtagaggt gggtacgcgg
     5101 cacgcccttc aggatcttgg cgaggaagtt gtcgagccgc tgcccgtccg agccgctgtc
     5161 gatgcggacg tttcgcacga gcggcgcggt gtcgtcggca cgctcgggtg gcgctgccgg
     5221 cgcgaccgcc ttggcgccac ctttgcgccc tataatgcgt tgctccactc tcgcccaagt
     5281 tgttgatttt tcagagttta gcgtcgcgat tcacggcgac gcgcggccga gagaggggcg
     5341 gtcggatcca gttccggcca accggtgatg caacgtcgcg tcgccccggc aggcagcgtc
     5401 cccatgcgac gccgcggctc cgaggcgcga cggcagagca aacaagaaag aatccacgac
     5461 aaggtttccc ggccgcagac gaacgcaaga cccggcctcg cgccgcggtc ccgcgctacg
     5521 cgctgcagcc atgcgtccag tgaccggaag ctcgccaccc agccgttttc ccactgtctc
     5581 gcgcgcgcca acgctggcgg agcccgcggt cgcctgaccg caccggctcg tcgtcagtcc
     5641 agggcgattc cttcggttcc tctcgtttct cgtgcatctg tgtagctgtt tcgggccctg
     5701 cccggcgcag cgctgtggcg cgcagcccgc aatcgggccc gcgccgaagg agtgcagatg
     5761 aaacgcatgc tgatcaacgc gacgcagccc gaagagcgcc gcctcgccat cgtcgacggc
     5821 cagaagttga tggacttcga gaccgagatc gagggtcgag agcagaggaa gggcaacatc
     5881 tacaaggcgg tcgtgacgcg ggtcgagccc tcgctcgagg cctgcttcgt cgactacggc
     5941 gaagaccgcc acggcttcct gccgttcaag gaaatctcga agaactattt ccgcgaaggc
     6001 accgacgcgc gcaccgcgcg gattcaggac gcgatcaagg aaggcgacaa cctgctcgtc
     6061 caggtcgaga aggaagagcg cggcaacaag ggcgcggcgc tgacgacctt cgtgtcgctg
     6121 gccggccgat acctcgtgct gatgcccaac aacccccgcg gcggcggcgt ctcgcgccgg
     6181 atcgagggcg aggaccgcga ggagctgaag gaaaacctcg accagctcga gtaccccaag
     6241 ggcatgagcc tgatcgcccg caccgccggc atcggtcgca ccgcgcccga gctgcagtgg
     6301 gacctgaact acatgctcaa gctctggacc gccatcgacg gcgcgtccaa ggccggcaag
     6361 ggcgcgttcc tgatctacca ggagagctcg ctcgtcatcc gcgcgatccg cgactacttc
     6421 accgccgacg tcggcgagat cctgatcgac accgacgaca tctacgacca ggcccagcag
     6481 ttcatggccc acgtgatgcc ggagacggcg cacaaggtca agcgctaccg cgacgacgcg
     6541 gcgctgttca gccggttcca gatcgagcac cagatcgaaa ccgcgttcgc gcgcaccgtc
     6601 aacctgccgt cgggcggcgc gatcgtcatc gaccacaccg aggcgctggt ctcggtcgac
     6661 gtcaactcgg cgcgctcgac gcgcggctcc gacatcgagg aaaccgcgac ccgcaccaac
     6721 ctcgaggctg ccgacgagat cgcgcgccag atgcgcctgc gcgacctggg cggcctgatc
     6781 gtggtcgact tcatcgacat ggaagagtcg aagaaccggc gcgaggtcga gacgcggctg
     6841 cgcgacgcgc tgcgctccga ccgcgcccgc gtccagttca gctcgatcag caagttcggc
     6901 ctgctcgaga tgagccgcca gcgcctgcgc cctgccctct ccgaaggcag ccacatcacc
     6961 tgcccgcgct gcaacggcac cggccacatc cgcgacactg aatcgtcggc cctgcagatc
     7021 ctgcgcatgg tccaggaaga gtcgatgaag gacaacaccg ccgccgtgca cgttcaggtg
     7081 ccggtcgagg tgacgtcgtt cctcctcaac gagaagcgca ccgagatcac caagatcgag
     7141 ctgaagcagc gcgtcaccgt gctgctggtg ccgaacaaga acctcgagac gccgaactac
     7201 cgcctcgagc ggctgcgtca cgacga
//
LOCUS       DASVHM010000931         6682 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_503404, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000931 DASVHM010000000
VERSION     DASVHM010000931.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 6682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6682
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_503404"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1983
                     /locus_tag="VF308_17115"
     CDS             <1..1983
                     /locus_tag="VF308_17115"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEX7438426.1"
                     /translation="SQMFAPMVWEGRAIGTLYVTRQPPTGFSDKEVGLLRTFADQAVI
                     AIQNARLFNETREALRKVELRTAELTEALDYQTAISDVLRVISQSPTDVVPVFEEILE
                     SASRLFGSPLSAVLRYDGRLVHLAATRNWPAAAIADASRFYPAAPNPQMLSGRVILSG
                     TVQSEEDALTDPDYDRQAAGLGHWRRMIGAPLLRDGQPIGAIIVAWPDPGVTPTRQAD
                     LLKTFADQAVIAIENVRLLSETTEALEQQTATAEVLQVISSSVADTQPVFDKILDSCE
                     RLFAATGLGIYLVDDAGMLQRGGFRAKNADSIPIVRSVAGEFPRPLEGSTTEIAIRER
                     RVVHFADVLADANVPAPLTRVAGISGNFSIAFAPMLWEGRGVGAIQVSRDPPQPFSDK
                     ELTLLKTFADQAVIAIQNSRLFNEIQAKSRELELANKHKSEFLANMSHELRTPLNAII
                     GFSEVLSEKMFGEINDKQLEYLLDIHTSGHHLLSLINDILDLSKIEAGRMELDLATTS
                     LPMLLDNCTTLVRERANRQGLVLALEVEDGLGDWVADIRKLKQVVINLLSNAVKFTPA
                     GGRVTLRARKLENAVEIAVVDTGVGIAKDQQALVFEEFRQAGGDYLRKSEGTGLGLSL
                     AKRFVELHGGTMRVESEPGRGSTFAFILPERVLEAI"
     gene            2016..2396
                     /locus_tag="VF308_17120"
     CDS             2016..2396
                     /locus_tag="VF308_17120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7438427.1"
                     /translation="MKTILIVEDNEKNMKLVRDILRHNGHATIEAPTGGEGVRLASEK
                     KPDLILMDIQLPDIDGIEALRRIREDPALDAVAVIAVSASVMPDDQQKIVTSGFDAFV
                     TKPINLKQFLDTVKRFLESGRARS"
     gene            2393..3418
                     /locus_tag="VF308_17125"
     CDS             2393..3418
                     /locus_tag="VF308_17125"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7438428.1"
                     /translation="MTIDVTGPWSRRAVARAIGAAALAYTMRSAVAQAPGRVWRIGYL
                     GPPADVGPQLLDAFRDGLRALGYVEGRTAAIEYRWTTREGGLFLNPDELLVLAQDLVG
                     RKIDVLAASVRPVILAARKATASVPIVMMNGTDPVESGLAASLAHPGGNVTGVTRLAS
                     ELIGKGFELLVEAVPKAKRIALLSNGAGAVESLVIANARQAAQARGIELQVLDVRAAS
                     GLQAAFAAMRAQQAEGLLVTGDGLFFAQRARIAELAIAQRLPTMVANTEVIEAGALLS
                     YSSSSVENYRRAATFIDKILRGVPPGDIPIEGPTKFELALNMKTAKAIGIVFPKSLLL
                     RANRVVE"
     gene            3415..4563
                     /locus_tag="VF308_17130"
     CDS             3415..4563
                     /locus_tag="VF308_17130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX7438429.1"
                     /translation="MNPSVVAPAKILVVDDVAMNVKLLADLLVVKGYRVCSATSGPAA
                     LVMLASERPDLVLLDVMMPGMSGYEVCAAIRADPAQAMLPVVLVTALDPAQERAKGLD
                     AGADDFLNKPVSQAELLARVRSLLRIKSLYDEVARRKEELLELNRTLEQRVADGVREL
                     EQVGRLKRFFSPQLAELIVAGGADDPLKSHRREITVVFLDLRGFTAFTETADPEEVMA
                     VLGEYHAAVGRLVLEHEGTLERFTGDGIMVFFNDPVPVADPAPRAARMALAMQGEVDA
                     LAAGWKKRGYDLLMGIGIAQGFATIGSIGFPGRIDYGAIGTVTNLAARLCGEARGGEI
                     LVSQRVQALLDGAVATEPAGELALKGFQRPVPAYRVVRGAVPSEPSSR"
     gene            5010..5903
                     /locus_tag="VF308_17135"
     CDS             5010..5903
                     /locus_tag="VF308_17135"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX7438430.1"
                     /translation="MNRRRVWMAAAGAALLPRLALAQPSYGSTARIGWLTAQRPASLV
                     PYLQAFRAALADELVRQRVDLIVVQGEAVLEIRKSALPVPVVYAYSGDPVSAGLAESL
                     ARPNANMTGLTYMAVELNGKRLELLRELAPGARRVALLANDYPGEPLERASSLAAAAR
                     LGLDVRDVRAGTSAELQAAFAKMTADKVQAISLAADSFAVQNRAELVDFAMRWRIPLV
                     TSWPVFADSGALCSYGPRLTDSYRRLAYYVGRVLKGARPADLPIEQPTTIETIVNLKT
                     AEAIGLKVPQSVLVRADRVIG"
     gene            complement(5854..>6682)
                     /locus_tag="VF308_17140"
     CDS             complement(5854..>6682)
                     /locus_tag="VF308_17140"
                     /inference="COORDINATES: protein motif:HMM:NF014801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HEX7438431.1"
                     /translation="VACVSAGTSVSISTGTHRYVEALPFAPAYPAAAPAMYCSEIQTH
                     CGFWMVRWFLDEFGQPEREAAMRQGVAPEAMFDSLAASAPAGAAGLMLQPHWSPGVRH
                     PAADARGSVIGFGPEHGRAHLARSILEGQAHAMREGRGLIERATGRSIETLVIVGAAS
                     RSDLVMQIMADVIGLPAVRLHTAEAAALGAAIDAAVGAGLHADVGAATSAMARAGRLF
                     QPNAEDSALYDRLHREVYRPMYGRLAPLYASLTQILRPRVGSSRSPDPPAPAPTAAP"
BASE COUNT         1069 a         2365 c         2264 g          984 t
ORIGIN      
        1 tcgcagatgt tcgcgccgat ggtctgggaa gggcgcgcca tcggcacgct ctacgtcacg
       61 cgccagccgc cgaccggctt cagcgacaag gaggtcggcc tgctgcgcac cttcgccgac
      121 caggccgtga tcgcgatcca gaacgcgcgc ctgttcaacg agacgcgcga ggccttgcgc
      181 aaggtcgagc tgcgcaccgc cgagctgacc gaggcgctcg attaccagac cgcgatcagc
      241 gatgtgttgc gcgtcatcag ccaatctccg accgacgtcg taccggtgtt cgaggaaatc
      301 ctggagagcg cgtcgcggct gttcggcagc cccttgtcgg cggtcctgcg gtacgacggc
      361 aggctcgtgc atctcgcggc gactcgcaac tggccggccg cggcgatcgc ggacgcgagc
      421 cgtttctatc ccgccgcgcc gaacccgcaa atgctcagcg gccgggtcat cctttccgga
      481 accgtgcaga gcgaagagga cgcgctcacc gacccggact acgaccggca agccgcgggg
      541 ctcggccact ggcgccgcat gatcggcgcg ccgctgctga gagatgggca gccgatcggc
      601 gcgatcatcg tcgcctggcc ggaccccggc gtgacgccga cccgccaggc cgatctgctg
      661 aagaccttcg ccgaccaggc cgtcatcgcg atcgagaacg tccgcctgct cagcgagacg
      721 accgaggcgc tcgagcagca gacggcgacg gccgaggtgc tgcaggtcat cagcagctcg
      781 gtcgccgaca cccagccggt gttcgacaag atcctcgaca gctgcgaacg gctgttcgcg
      841 gcgaccgggc tgggcatcta cctggtcgac gacgccggca tgctgcagcg cggcggcttt
      901 cgcgccaaga acgcggactc gattccaatc gtgcgctcgg tcgccggcga attcccgcgt
      961 ccgctcgagg gctccacgac cgagatcgcg atccgcgagc ggcgcgtcgt ccacttcgcc
     1021 gacgtgctcg ccgacgccaa cgtgccggcg ccgctgacgc gcgtcgccgg gatcagcggc
     1081 aacttctcga tcgcgttcgc gcccatgctc tgggaaggac gtggcgtcgg cgcgatccag
     1141 gtctcgcgcg atccaccgca gccgttcagc gacaaggagc tgaccctcct caagaccttc
     1201 gccgaccagg cggtgatcgc gatccagaac tcgcgcctgt tcaacgagat ccaggccaag
     1261 agccgcgagc tcgagctcgc caacaagcac aagtcggagt tcctcgccaa catgtcgcac
     1321 gagctgcgca cgccgctcaa cgcgatcatc ggcttttccg aggtgctctc ggagaagatg
     1381 ttcggcgaga tcaacgacaa gcagctcgag tacctgctcg acatccacac ctcgggccac
     1441 cacctgctct cgctcatcaa tgacatcctc gacctgtcga agatcgaagc cgggcggatg
     1501 gagctcgacc tggcgacgac gagcctgccg atgctgctcg acaactgcac gacgctggtg
     1561 cgcgagcgcg ccaaccggca gggcctggtg ctcgcgctcg aggtcgagga cggcctcggc
     1621 gactgggtcg ccgacattcg caagctcaag caggtggtga tcaacctgct ctcgaacgcg
     1681 gtcaagttca cgcccgcggg cggccgcgtc acgctgcgcg cgcgcaagct cgagaacgcg
     1741 gtcgagatcg ccgtcgtcga caccggcgtc ggcatcgcca aggaccagca ggcgctcgtc
     1801 ttcgaggagt tccgccaggc cggcggcgac tacctgagga agtccgaagg caccggcctc
     1861 ggcctctcgc tcgccaagcg cttcgtcgag ctgcacggcg gcacgatgcg ggtcgagagc
     1921 gagcccggcc gcggctcgac ctttgccttt attcttcccg agcgagttct cgaagcgata
     1981 tgagagcgac gcacggcaaa cgcgaaggct gagcgatgaa aacgatcctg atcgtcgagg
     2041 acaacgagaa gaacatgaag ctcgttcgcg acatcctgcg ccacaacggc cacgcgacga
     2101 tcgaggcgcc gaccggcggc gaaggcgttc gcctggcgag cgagaagaag cccgacctga
     2161 tcctgatgga catccagctg cccgacatcg acggcatcga ggcgctgcgc cgcatccgcg
     2221 aggaccccgc cctcgacgcc gtcgcggtga tcgcggtctc ggcgtcggtg atgcccgacg
     2281 accagcagaa gatcgtcacc tcgggcttcg acgccttcgt caccaagccg atcaacctga
     2341 agcagttcct cgacaccgtg aagcgctttc tcgaaagcgg gcgggctcga tcgtgacgat
     2401 cgacgtcacg ggcccatgga gcaggcgcgc cgtcgcgcgc gcgatcggcg ccgcggccct
     2461 cgcgtacacg atgcgaagtg cggtcgcaca agctccgggc agggtctgga ggatcggcta
     2521 cctcggtccg ccggccgacg tggggccgca actgctggac gcatttcgcg acggcctgcg
     2581 cgcgctcggc tacgtcgagg ggcgcaccgc cgcgatcgaa taccgctgga ccacgcgcga
     2641 gggcggcctg ttcctcaacc ccgacgagct cctcgttctg gcccaggatc tggtgggtcg
     2701 aaagatcgac gtgctggcgg cgtcggtgcg gccggtcatc ctcgcggcgc gcaaggcgac
     2761 ggcgagcgtg cccatcgtga tgatgaacgg caccgatccc gtcgagtccg gtctcgccgc
     2821 gagcctcgcc catcccggcg gcaacgtgac gggcgtgacg cggctcgctt ccgagctcat
     2881 cggcaagggc ttcgagctcc tcgtggaagc cgtgcccaag gcgaagcgga tcgccctgct
     2941 ctcgaacggc gccggcgcgg tcgagagcct ggtcatcgcc aacgcgcggc aggctgcgca
     3001 ggcgcgcggc attgagctcc aggtgctcga cgtgcgcgcg gcgtccggcc ttcaagcggc
     3061 cttcgccgcg atgagggctc agcaggccga aggcctgctc gtcaccggcg acggtctctt
     3121 cttcgcccag cgcgcccgca tcgccgagtt ggcgatcgcg cagcggctgc cgacgatggt
     3181 cgcgaacacc gaagtgatcg aggccggtgc cttgctctcg tactcgtcga gctcggtcga
     3241 gaactaccgg cgcgcggcga cgttcatcga caagatcctg cgcggcgtgc cgccgggcga
     3301 catcccgatc gaagggccga ccaaattcga gcttgcgctc aacatgaaga cggccaaggc
     3361 catcggcatc gtctttccga agtccctgct cctgcgcgcc aaccgcgtcg tcgaatgaat
     3421 ccgtcggttg tggcgcccgc gaagatcctc gtcgttgacg acgtggcgat gaacgtcaag
     3481 ctgctcgccg acctgctcgt cgtcaagggc taccgcgtct gcagcgcgac ctcggggccg
     3541 gcggcgctgg tgatgctcgc gagcgagcgg cccgacctcg tcctcctcga cgtgatgatg
     3601 cccggcatga gcggctacga ggtgtgcgcg gcgatccgcg ccgacccggc gcaggcgatg
     3661 ctgccggtcg tcctcgtcac cgcgctcgat cccgcgcagg agcgcgccaa gggcctcgac
     3721 gccggcgccg acgacttcct caacaaaccc gtgagccagg ccgagctgtt ggcacgcgtg
     3781 cgctcgctgc tgcgcatcaa gtcgctgtac gacgaggtgg cgcgcaggaa ggaggagctg
     3841 ctcgagctca accgcacgct cgagcagcgc gtcgccgacg gcgtgcgcga gctcgagcag
     3901 gtcggccggc tgaagcgctt cttctcgccg cagctcgccg agctcatcgt cgccggcggc
     3961 gccgacgatc cgctgaagag ccaccggcgc gagatcaccg tcgtcttcct cgacctgcgc
     4021 ggcttcaccg ccttcaccga gaccgccgac cccgaggagg tgatggcggt gctcggcgaa
     4081 taccacgcgg cggtcggccg gctcgtgctc gagcacgagg gcacgctcga acgcttcacc
     4141 ggcgacggca tcatggtgtt cttcaacgac ccggtgccgg tcgccgatcc ggcgccgcgc
     4201 gcggcgcgca tggcgctggc gatgcaaggc gaggtggacg cgctcgccgc gggctggaag
     4261 aagcgcggct acgacctgct catgggcatc ggcatcgccc agggcttcgc gaccatcggc
     4321 agcatcggct ttcccgggcg catcgactac ggcgcgatcg gaaccgtcac caacctcgcc
     4381 gcgcgcctgt gcggcgaagc gcgcggcggc gagatcctgg tgtcgcagcg ggtgcaggcg
     4441 ttgctcgacg gcgccgtcgc caccgagccg gccggcgagc tggcgctgaa ggggtttcag
     4501 cggccggtgc cggcgtaccg ggtcgtgcgc ggcgcggtgc cgtcagagcc ttcctcccgt
     4561 tgacggacga cgtttcgcgc gtccttcgcc tcgcgttggc ggcggcttgg cattccgctc
     4621 gctagagtga gtcgcgcccg tgcccggccc gaatcgagag ccggcgccga gagcggtcac
     4681 cggagcgctt cgccatgagg agacacgtat tgggaggttt accaaggctc gcgatattcg
     4741 agtcgtgccc tacagtgagg tgtcctcgtt gaacgattgg ctcatgaaac aagcaactct
     4801 ctggcagatc ctcgcttgcg atgcaatgcg accgatacgc gggcgccgga gtcatcgacc
     4861 cgatcgaggc cgcacgcact ttgtcgggcc gcgccgacgc atgtcgttcc ttatgaggat
     4921 gcgcgcgaca tgacccgccg ctagagtggc cgttcggccg ggagccacga cggcgtcgtc
     4981 ggtggtcatc ggcccatcga ggacacctca tgaacagacg tcgcgtgtgg atggctgccg
     5041 ctggcgccgc gctgctgccg cgccttgccc tggcccagcc ttcgtacggc agcacggccc
     5101 gcatcggctg gctcaccgcg cagcggccgg cgagcctcgt gccctacctg caggcctttc
     5161 gcgccgcgct cgccgacgag ctcgtgcgcc agcgcgtcga cctcatcgtc gtgcagggcg
     5221 aggcggtgct cgagatccgg aagtcggcgc tgccggtgcc ggtcgtctac gcctacagcg
     5281 gcgacccggt gagcgccggc ctcgccgaga gcctggcgcg cccgaacgcg aacatgaccg
     5341 gcctcaccta catggccgtc gagctgaacg gcaagcgcct cgagctgctg cgcgagctcg
     5401 cccccggcgc gcgtcgcgtc gccctgctcg ccaacgacta tcccggcgag ccgctcgagc
     5461 gcgcgagctc gctggccgcc gccgcgcggc tcggcctcga cgtgcgcgac gtgcgcgccg
     5521 gcacgtcggc cgagctgcag gcggcgttcg cgaagatgac ggccgacaag gtacaggcga
     5581 tctcgctcgc cgccgacagc ttcgcggtgc agaaccgcgc cgagctcgtc gacttcgcga
     5641 tgcgctggcg catcccgctc gtgacgagct ggccggtgtt cgccgacagc ggcgccctgt
     5701 gctcgtacgg cccgcgcctc accgactcgt accggcgcct cgcctactac gtgggccgcg
     5761 tgctgaaggg cgcccgcccc gccgacctgc cgatcgagca gccgacaacg atcgagacca
     5821 tcgtcaacct gaagaccgcc gaggcgatcg ggctcaaggt gccgcagtcg gtgctggtgc
     5881 gggcggatcg ggtgatcggc tagagccgac acgcggccgc aagatctgcg tcaagctggc
     5941 gtacaggggc gcaaggcgcc cgtacatcgg ccggtagacc tcccggtgca gccggtcgta
     6001 gagggccgag tcctcggcgt tgggctgaaa gagccgcccg gcacgcgcca tcgcggaggt
     6061 tgcagccccc acgtcggcgt gcaatccggc acccaccgct gcgtcgatcg cggctccgag
     6121 tgcggcagcc tcggcggtat gcaggcgcac tgccggtaag ccgatgacgt cggccatgat
     6181 ctgcatcaca aggtccgaac gcgaagccgc accgacgatg acgagcgtct cgatcgaccg
     6241 accggtcgca cgctcgatca aaccacgccc ttcccgcatg gcgtgcgcct ggccctcgag
     6301 gatcgagcgg gccaggtgcg cgcgcccatg ctccgggccg aatccgatca cgctgcctcg
     6361 cgcatcggct gccggatggc gcacgccggg agaccagtgc ggctgcagca tcaggccggc
     6421 agcgccggcg ggcgcactgg cagcgagcga gtcgaacatc gcttcgggtg cgacgccctg
     6481 ccgcatggcc gcctcccgct ccggctgccc gaactcgtcg aggaaccacc gcaccatcca
     6541 gaaaccgcaa tgggtctgga tttcactgca gtacatggca ggtgcggcgg cagggtaggc
     6601 cggcgcaaac ggcaaggcct cgacgtagcg atgcgttccg gtgctgatcg acaccgacgt
     6661 cccggccgaa acgcacgcca ca
//
LOCUS       DASVHM010000932         1809 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_503449, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000932 DASVHM010000000
VERSION     DASVHM010000932.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1809
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_503449"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1809
                     /locus_tag="VF308_17145"
     CDS             <1..>1809
                     /locus_tag="VF308_17145"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEX7438432.1"
                     /translation="AIQNARLFNETKEALEQQTATSDVLQVISSSVADTAPVFEKILD
                     SCQRLFSTAQLGIFLVGEGGQLHTGAFRGSLIEGVKHTFPRPLAETTSGLAIRQRRPI
                     YIPDSSDAARTAPATRAVAARAGNFSAVFAPMLWEDSGVGSIGVLRQPPQPFSDKEIS
                     LLKTFADQAVIAIQNARLFNETQEALRQQKASAEVLAVISSSVADTQPVFDKILDSCK
                     HLFGGDELDVLLVDAQNQLQVAAYVGNARDAVMATFPAPVAGSAPGRAITERRVAHYV
                     DVLNDPDTPPVLRRLGKVAGYHSVAFAPMLWEDRGIGVVGVARARGAFSDKELVLLQT
                     FADQAVIAIQNARLFNETKEALEQQTATSEVLKAISRSTFDLSAVLEVLIENATRLAG
                     AHQGFVFRFDGEFARMAFSYNARPAYTALIEANPISPGRGSLVGRTLLERRPVHIPDV
                     LADQEFTWSEAQRLGGFRSMLGVPMLREGSIIGVIAVWSDAVRPFTERQIGLVSTFAD
                     QAVIAIENVRLFNETKDALEQQTATAEILRVISGSVTDTQPVFDAIVQSCRRLFGGKA
                     VHLAMPRGDMIEDVAFASDSQAPKGVGFLKPWPLDRG"
BASE COUNT          296 a          624 c          599 g          290 t
ORIGIN      
        1 cgcgatccag aacgcgcgcc tgttcaacga gaccaaggaa gcgctcgagc agcagacagc
       61 gacttccgat gtgttgcagg tcatcagcag ctcggtcgcc gataccgcgc cggtgttcga
      121 gaagatcctc gacagctgcc agcgtctgtt ctcgaccgct cagctcggga tcttcctcgt
      181 cggcgagggc ggccagttgc acaccggcgc gttccgaggc tcgctgatcg aaggcgtgaa
      241 gcacaccttc ccgagaccgc tcgccgaaac cacgagcggg cttgctatca ggcaacggcg
      301 gccgatctac atcccggatt cgtcggacgc cgcccgcacc gcgccggcga cgcgcgctgt
      361 ggccgcgcgt gccggcaact tttccgccgt gttcgcgccg atgctctggg aagactcggg
      421 cgtcggctcg atcggcgtcc tcaggcagcc gccgcagccg ttctccgaca aggagatcag
      481 cctgctcaag accttcgccg accaagccgt gatcgcgatc cagaacgcgc gcctgttcaa
      541 cgagacgcag gaggcgttgc ggcagcagaa ggcgtctgcc gaggtgctcg ccgtcatcag
      601 cagctcggtg gccgacaccc agccggtgtt cgacaagatc ctcgacagct gcaagcacct
      661 gttcggcggc gacgagctcg acgtgctgct ggtcgatgcg cagaaccagc tgcaggtcgc
      721 cgcctacgtc ggcaacgcgc gcgacgcggt gatggcgacc ttccccgcgc cggtggccgg
      781 atcggcgcct ggtcgcgcca tcaccgagcg ccgcgtcgcc cactacgtcg acgttctcaa
      841 cgatcccgac acgccgccgg tgctgcgccg cctgggcaag gtcgcgggct accactcggt
      901 cgcgttcgcg ccgatgctgt gggaagaccg cggcatcggc gtcgtcggcg tggcgcgcgc
      961 ccgcggcgcc ttcagcgaca aggagctggt gctgctgcag accttcgccg accaggcggt
     1021 gatcgcgatc cagaacgcgc gcctgttcaa cgagaccaag gaggcgctgg agcagcagac
     1081 cgccacaagc gaagtgctga aggcgatcag ccgctcgacc ttcgatctga gcgccgtgct
     1141 cgaggtcttg atcgagaatg cgacgcgcct cgccggcgcc caccagggct tcgtgtttcg
     1201 cttcgacggc gagttcgcac gcatggcgtt ctcgtacaac gcgcggcccg cgtatacggc
     1261 gctgatcgaa gccaacccga tttcgcccgg tcgcggcagc ttggtcggcc gcacgttgct
     1321 cgaacgccgg cctgtgcaca ttccagacgt tctggcggac caggagttca cctggagcga
     1381 ggcccagcgc ctgggcggat ttcgctccat gctcggcgta ccgatgctgc gcgagggcag
     1441 catcatcggc gtgattgccg tgtggtctga cgcggtcagg ccgtttaccg agaggcagat
     1501 cggactcgta tcgaccttcg ccgaccaggc cgtcatcgcg atcgagaacg tgcgcctgtt
     1561 caacgagacc aaggacgcgc tcgagcagca gacggcgacg gccgagatcc tgcgcgtcat
     1621 cagcggctcg gtcaccgaca cgcagccggt gttcgatgcc atcgtgcaaa gctgccggcg
     1681 cctgttcggc ggcaaggcgg tgcacctggc gatgccgcgc ggcgacatga tcgaggacgt
     1741 tgccttcgct tccgactcgc aggcgccgaa gggcgtcggc ttcctcaagc cctggccgct
     1801 cgaccgcgg
//
LOCUS       DASVHM010000933         2650 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_215943, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000933 DASVHM010000000
VERSION     DASVHM010000933.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215943"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            10..951
                     /gene="ispB"
                     /locus_tag="VF308_17150"
     CDS             10..951
                     /gene="ispB"
                     /locus_tag="VF308_17150"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HEX7438433.1"
                     /translation="MAADMRQVDEVIQRRLASDVVMINQIAHYIISAGGKRIRPMLVL
                     LFASALGFEGRERFELAATVEFVHTATLLHDDVVDESALRRGRQTANALFGNAASVLV
                     GDFVYSRAFQMMVSVNRMRVLEVLADATNVIAEGEVLQLMNMHDPDLAVADYLRVIRF
                     KTAKLFEASARLGAVLAAAEPAVEESCAAYGRSLGTAFQLVDDLLDYEGATAQLGKNV
                     GDDLREGKPTLPLLIAMERGSAEERDLMRHAIEHGEVARLSEIVEIVRHTGALAATRE
                     AARAEADKAQGMLDALPASPYREALLELCVRSVERSS"
     gene            990..1066
                     /locus_tag="VF308_17155"
     tRNA            990..1066
                     /locus_tag="VF308_17155"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1024..1026,aa:Pro,seq:cgg)
     gene            1217..>2650
                     /locus_tag="VF308_17160"
     CDS             1217..>2650
                     /locus_tag="VF308_17160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011828109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HEX7438434.1"
                     /translation="MDTLAEAPHSALSGVARVLVHAGKLNAKTAEELVRVSKEKRNSF
                     VASVISAGAVSPGDLAHTLAAALALPLLDLSAIDAQRLPRNVIDTKLAAQYQVVVLGK
                     RGNRIFIGGADPTDQEAVERIKFATQLSPEWVIVEHDKLAKLLEGAGASANEAMEQLA
                     SGDFEFDVTDDVTAPQEANEVATEVEDAPVVRFLQKMLIDAINLRASDLHFEPYEYHY
                     RVRFRIDGELREITQPPIAIKDKLSSRIKVISRLDIAEKRVPQDGRMKLKFGAKAIDF
                     RVSTLPTLFGEKIVIRILDPSSAKVGIEALGYEKIEKDRLLKIIQRPYGMVLVTGPTG
                     SGKTVSLYTCLNILNQPGVNISTVEDPAEINLPGVNQVNVNDRAGLTFAVALKSFLRQ
                     DPDIIMVGEIRDLETADIAIKAAQTGHMVMSTLHTNDAPTTLTRLLNMGVAPFNIASS
                     ILLITAQRLARRLCENCKVPAEFPRDAM"
BASE COUNT          491 a          889 c          832 g          438 t
ORIGIN      
        1 gcgctgctga tggccgccga catgaggcag gtcgacgagg tgatccagcg ccgcctcgcg
       61 tccgacgtgg tcatgatcaa ccagatcgcg cactacatca tcagcgcggg cggcaagcgc
      121 atccggccga tgctggtgct gctcttcgcg agcgcgctcg ggttcgaagg gcgagagcgc
      181 ttcgagcttg cggccaccgt cgagttcgtc cataccgcca ctctgctgca tgacgacgtc
      241 gtcgacgagt ccgccctgcg gcgcgggcgc cagaccgcca acgctctctt cggcaatgcg
      301 gcgagcgtgc tggtcggcga cttcgtctat tcgcgcgcct tccagatgat ggtctccgtc
      361 aatcgaatgc gtgtgctcga ggtcctggcc gacgcgacca acgtgatcgc cgagggcgaa
      421 gtgctgcagt tgatgaacat gcacgacccc gacctcgccg tcgcggacta cctgcgcgtg
      481 atccggttca agacagcgaa acttttcgaa gcgagcgccc gactcggcgc ggtgctcgcc
      541 gcagccgagc cggccgtgga ggaatcctgc gcagcctacg ggcgctcgct cgggacggcc
      601 tttcaattgg tcgacgacct gctcgactac gagggagcca ccgcgcagct cggcaagaac
      661 gtcggcgacg acctgcgcga gggcaagccc acgctgccgc tgctgatcgc gatggaacgc
      721 ggctctgccg aggagcgcga cctcatgcgg cacgccatcg aacacggcga ggtcgcccgc
      781 ttgagcgaga tcgtggagat cgtgcgtcac accggcgcgc tcgccgccac gagggaggct
      841 gcgcgcgccg aggccgacaa ggcgcaaggc atgctcgacg cgttgccggc ctcgccgtat
      901 cgcgaggctc tgctagaatt atgtgttcga tcggttgagc gctcgtcatg agcgctcgct
      961 gcgcggcccg ccacgcggcg gcgctcgatc ggggtgtagc ttagcctggt agagcgctac
     1021 gttcgggacg tagaggccgg aggttcgaat cctctcaccc cgaccaatcc gcccggtgtc
     1081 tagtccactt gcaattgttg caactggctt ctacccgcgt gaattgttgg cgacgggttt
     1141 ccccggcagc gtttacaccg ctgggtgaat cggcgatgat cgtccgattc cacaacatga
     1201 actgagcgcc tgaagcgtgg acacattggc cgaggctcca cattcagccc tctccggcgt
     1261 ggcgagggtt ctcgttcacg ccggcaagct taacgcaaag accgccgaag aactggttcg
     1321 cgtctcgaaa gagaagcgca acagtttcgt ggcctcggtc atctccgcgg gcgccgtctc
     1381 gccgggcgac ctcgcgcaca cgctcgctgc ggccctcgcc ctgcccctgc tcgatttgtc
     1441 ggccatcgat gcgcagcgcc tgccgcgcaa cgtcatcgac accaagctcg ccgcgcagta
     1501 ccaggtcgtc gtgctcggca agcgcggcaa ccgaatcttc atcggcggcg cggacccgac
     1561 cgatcaggag gcggtcgagc gcatcaagtt cgcgacccag ctgtcgcccg agtgggtgat
     1621 cgtcgagcac gacaagctcg cgaagctgct ggaaggcgcc ggcgccagcg ccaacgaggc
     1681 gatggagcaa ctcgcgtccg gcgacttcga gttcgatgtc accgacgacg tcaccgcgcc
     1741 gcaggaagcg aacgaggtcg caactgaagt cgaagacgcg ccggtcgtgc gcttcctgca
     1801 gaagatgctc attgacgcga tcaacctgcg cgcctccgac ctgcatttcg agccctacga
     1861 atatcactac cgggtgcgct ttcgcatcga cggcgaactg cgcgagatca cccagccgcc
     1921 gatcgcgatc aaggacaagc tctcgtcacg catcaaggtg atttcgcgcc tcgacatcgc
     1981 cgaaaagcgc gtgccccagg acggacgcat gaagctcaag ttcggcgcca aggcgatcga
     2041 cttccgggtg agcacgctgc cgacgctgtt cggcgaaaag atcgtgatcc ggattctcga
     2101 cccgtcgagc gcaaaggtcg gaatcgaggc gctcggctac gaaaagatcg aaaaggaccg
     2161 cctgctcaag atcatccagc ggccctacgg catggtgctc gtgaccgggc cgaccggcag
     2221 cggcaagacg gtgtcgctct acacctgcct caatatcctg aaccagccag gcgtcaacat
     2281 atcgacggtc gaggacccgg ccgaaatcaa cttgccgggt gtcaaccagg tcaacgtcaa
     2341 cgaccgggcc gggctcacct tcgcggtcgc cctcaagtcg ttcctgcggc aggacccgga
     2401 catcatcatg gtcggcgaaa tccgcgacct cgaaaccgcc gatatcgcga tcaaggccgc
     2461 ccaaaccggg cacatggtga tgtcgacgct gcacaccaac gacgcaccga ccaccttgac
     2521 gcgcctcctg aacatgggcg tggcgccgtt caacatcgcg tcgagcattc tgctgatcac
     2581 tgcgcagcgg ctggcccgcc gcctgtgcga gaactgcaag gttccggccg aatttccgcg
     2641 cgacgcgatg
//
LOCUS       DASVHM010000934         2542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_503615, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000934 DASVHM010000000
VERSION     DASVHM010000934.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_503615"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VF308_17165"
     CDS             complement(<1..605)
                     /locus_tag="VF308_17165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012747787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX7438435.1"
                     /translation="MALLSGVARRGLLYVLLVLLGAMSLAWNLVAWVLYPMVPKRGGT
                     ALGRAAIGRVYRIFWATAEACGMMRIDASALDPLHDEPGGLIIAANHPTMLDALVVVA
                     RLPRGVCIMKAELMRNVFLGAGARFARYIRNDSPHGMVRCAVECLREGGQLVMFPEGT
                     RTARLPIDRFRPGVTLIAQRAGVPIQAVLIETDTAYLRKGWP"
     gene            complement(614..1480)
                     /locus_tag="VF308_17170"
     CDS             complement(614..1480)
                     /locus_tag="VF308_17170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MipA/OmpV family protein"
                     /protein_id="HEX7438436.1"
                     /translation="MRRASLWACGLALAALCGPAAATDAAVPGAEAERLVPEPLWELG
                     LGVAALRLPDYRGSDQSSAYLLPLPYIVYRGEWLRADRDGARALLLQTERVKIDLSVA
                     ASVPTRSRDNAARRGMPNLAPSLELGPNVNIELLRSAEGRVRLDLRLPLRAAVTLERS
                     PHAIGLTLSPNLNLDLRDFGGGWKIGLLGGPLFADRAYHEHFYGVDAAYATPQRPAFQ
                     ARAGYAGWQALGAASRRLGNTWVGAFLRYDSLRGAVFEASPLVRRDHEVSAGIGVSWI
                     FATSGRLVAAED"
     gene            complement(1477..>2542)
                     /locus_tag="VF308_17175"
     CDS             complement(1477..>2542)
                     /locus_tag="VF308_17175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophan 7-halogenase"
                     /protein_id="HEX7438437.1"
                     /translation="SPDHDHTSLIEFADGWDKKLPYAWQVRRSELDELLFRHAARKGA
                     RTVEGCRARQVTFDAEGATVQVEAEGGATRSWRTRFVVDASGRDTLLANLFGCKQKNP
                     RHNSSALYAHYTGVERLAGKLEGNISIFWFAHGWFWLIPLADGVTSIGAVCWPYYLKS
                     RTRPLDEFFGDTLALCPALAKRVGDGERVSEVYATGNYSYSSSVSSGARYLMLGDAYA
                     FIDPVFSSGVYLAMQSGFAGVDVVEATLDRPQTATAARRTFDTLMKHGPREFSWFIFR
                     VTNPTLREFFMAPGNPLRVKEAMISLLAGDIYGRTPIWPSIFAIKALYYLVSIGNFGR
                     TWRAWKRRRINIRDVEAPAS"
BASE COUNT          427 a          874 c          892 g          349 t
ORIGIN      
        1 ggccagccct tgcgcagata ggccgtatcg gtctcgatga gcacggcctg gatcggcacg
       61 ccggcgcgct gcgcgatcaa ggtgacgcca ggccggaagc gatcgatcgg gagccttgcg
      121 gtgcgcgtgc cctcgggaaa catcacgagc tggccgccct cgcgcaggca ctcgaccgcg
      181 cagcgaacca tgccgtgcgg cgaatcgttg cggatgtagc gcgcgaagcg cgcgcccgcg
      241 ccgaggaaga cgttgcgcat cagctccgcc ttcatgatgc acaccccgcg cggcagccgc
      301 gccacgacga cgagcgcgtc gagcatggtc ggatggttgg cggcgatgat gaggccgccc
      361 ggttcgtcgt gcagcgggtc gagcgccgac gcgtcgatgc gcatcatgcc gcaagcctcg
      421 gccgtggccc agaagatccg gtagaccctt ccgatggcgg cacggccgag ggcagtgccg
      481 cctcgcttcg gtaccatcgg atacagcacc caggcgacga gattccaggc gagcgacatc
      541 gcaccgagca gcaccagcag cacatagagc aggccgcgcc gcgcgacacc ggacagcagc
      601 gccaagaccc gcctcaatcc tcggccgcga cgagccggcc cgaggtcgcg aagatccatg
      661 agaccccgat gccggcgctc acctcgtgat cgcgacgcac gagcgggctc gcctcgaaga
      721 ccgcgccgcg caggctgtcg taacgcagga aggcgccgac ccaggtgttg cctaagcgtc
      781 gcgacgcggc gccgagcgcc tgccagccgg catagccggc acgcgcctgg aaagccgggc
      841 gctgcggcgt cgcgtaggcg gcatcgacgc cgtagaaatg ctcgtggtag gcgcggtccg
      901 cgaagagcgg cccgccgagc aggccgatct tccagccgcc gccgaagtcc ctcaggtcga
      961 ggttcaagtt cggcgacaag gtcaacccga tcgcatgcgg cgaacgctcc agcgtgaccg
     1021 ccgcgcgcag cggcaggcgc agatccaggc gcacgcgccc ctcggccgag cgcaggagtt
     1081 cgatgttgac attcgggccg agctccaggc tcggcgccag attcggcata ccgcggcgcg
     1141 ccgcgttgtc gcggctgcgc gtgggcaccg acgcggccac gctgagatcg atcttcacgc
     1201 gctcggtctg caacaacagg gcgcgtgccc cgtcgcggtc ggcgcgcaac cattcgccgc
     1261 ggtagacgat gtacgggagc ggcagcaggt aggcgctgct ctggtccgaa ccgcgatagt
     1321 cgggcaggcg cagtgccgcc acaccgaggc cgagttccca gagcggttcg gggacgaggc
     1381 gctcggcttc ggccccgggc accgccgcat cggtggccgc ggccggcccg cacagcgccg
     1441 ccagtgcgag cccgcacgcc cagagcgagg cgcgcctcac gaagccggcg cctcgacgtc
     1501 gcgaatgttg atgcggcgcc gcttccaggc gcgccaggta cggccgaagt tgccgatcga
     1561 caccaggtag tagagcgcct tgatcgcaaa gatcgagggc cagatcggcg tcctgccgta
     1621 gatgtcgccg gccagcagcg agatcatcgc ctccttgacg cgcagcgggt tgcccggcgc
     1681 catgaagaac tcgcgcaggg tcggattcgt cacgcgaaag atgaaccagg agaattcgcg
     1741 cgggccgtgc ttcatcagcg tgtcgaaggt ccggcgcgcg gccgtggccg tctgcggccg
     1801 gtcgagtgtg gcctcgacca cgtcgacacc ggcgaatccg ctctgcatgg ccaggtacac
     1861 gcccgacgag aacaccgggt cgatgaaggc gtaggcatcg ccgagcatca ggtagcgcgc
     1921 gccgctgctg accgaactgc tgtacgaata gttgccggtc gcgtagacct cggacacgcg
     1981 ttcgccgtca ccgacgcgct tggccagcgc cgggcacaag gcgagggtgt cgccgaagaa
     2041 ttcgtcgagc ggcctggtgc gcgacttcag gtagtagggc cagcacaccg cgccgatgct
     2101 cgtcacgccg tcggccagcg ggatgagcca gaaccagccg tgggcgaacc agaagatcga
     2161 gatgttgcct tcgagcttgc cggccaggcg ctcgacgccg gtgtagtgcg catagagggc
     2221 cgagctgttg tggcgcgggt tcttctgctt gcacccgaag aggttcgcga gcagcgtgtc
     2281 gcggcccgag gcgtcgacga cgaaccgggt gcgccagctc cgggtcgcgc ccccttcggc
     2341 ctcgacttgc acggtcgcgc cctcggcatc gaacgtgacc tggcgcgccc gacagccttc
     2401 gacggtgcga gcaccttttc ttgccgcgtg ccggaacagc agctcgtcga gttcggagcg
     2461 gcgcacttgc cacgcatacg gcagcttctt gtcccagccg tcggcaaact cgatcaggct
     2521 cgtgtgatcg tggtcgggcg ac
//
LOCUS       DASVHM010000935         1748 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_70148, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000935 DASVHM010000000
VERSION     DASVHM010000935.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70148"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..554)
                     /locus_tag="VF308_17180"
     CDS             complement(45..554)
                     /locus_tag="VF308_17180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007828164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX7438438.1"
                     /translation="MSDSAKRAPRPFRVLGIQQVAIGAASKARLKTLWVDKFGLEVTG
                     HFTSERENVDEDICAIGAGPFKVEVDLMQPIDPNAKPAVHVTPLNHIGLWIDDLPRAV
                     EWLGSEGVRFAPGGIRKGAAGHDICFVHPKGSAEFPVGGEGVLIELVQAPPEVIAALG
                     AARAPVEGG"
     gene            complement(573..722)
                     /locus_tag="VF308_17185"
     CDS             complement(573..722)
                     /locus_tag="VF308_17185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438439.1"
                     /translation="MHGLEHVADQGIEFGRAESLDRLGDAQQARVAADKGETLAVDQV
                     IVEFE"
     gene            660..1142
                     /locus_tag="VF308_17190"
     CDS             660..1142
                     /locus_tag="VF308_17190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEX7438440.1"
                     /translation="MEAFGTPELDALVRDMFETMHAANGAGLAAPQIGVDLALVIFGF
                     GTNQRYPDAPPVPETVLINPTFAPLGDLEEEGWEGCLSVPGLRAVVPRWARIRYAGFD
                     PAGERIEREAEGFHARVVQHECDHLIGTLYPMRVRDFRRFGFTSVLFPDSDQDGMLDD
                     "
     gene            1286..>1748
                     /locus_tag="VF308_17195"
     CDS             1286..>1748
                     /locus_tag="VF308_17195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438441.1"
                     /translation="MNSIFRFPGRQLLAAVLGAAACLGALVGAPALAQSPDVDPPGRV
                     ARIAETFGQVWIYTTDTGEWISALRNRPVTSGDRLATDVGARVELNLGSTTLRLDGGS
                     EIEVRRLDDTLVALQLHHGSAAVHVRDAQAVGEFEMTTEEGRLRLQRAGHDR"
BASE COUNT          258 a          619 c          578 g          293 t
ORIGIN      
        1 gtcatcgatg cactcgcttg atttgaaaag acgccgccgt gccgctatcc gccctcaacc
       61 ggggcgcgcg ccgcgccgag cgcggcgatc acctcgggcg gcgcctgcac cagttcaatc
      121 agcacaccct cgccgccgac cggaaactcg gcgctgcctt tcggatgcac gaagcagatg
      181 tcgtgaccgg ctgcgccctt gcggatgccg cccggcgcga aacgcacgcc ttcggatccc
      241 agccactcga ccgctctcgg gaggtcgtcg atccacagac cgatatggtt cagcggcgtg
      301 acatgcacgg caggcttggc gttcggatcg atcggctgca tcaggtcgac ctcgaccttg
      361 aaggggccgg cgccgatggc gcagatgtct tcgtcgacgt tctcgcgttc gctcgtgaaa
      421 tgccccgtca cttcgaggcc gaacttgtcg acccacaagg tcttcaggcg cgccttgctg
      481 gcggcgccga tcgccacctg ctggatgccg agcacccgaa acgggcgcgg cgcgcgcttg
      541 gccgaatcac tcatcgcgct gctcgcccgg cttcactcga actcgacgat gacctggtcc
      601 accgcgaggg tttcgccctt gtccgcggcg acccgcgcct gctgcgcgtc gccaagccga
      661 tcgaggcttt cggcacgccc gaactcgatg ccctggtccg cgacatgttc gagaccatgc
      721 atgccgccaa cggcgcgggc ctcgcggcgc ctcagatcgg cgtcgacctg gccctcgtga
      781 tcttcgggtt cggcaccaac cagcgctatc ccgacgcgcc gccggtgcca gagaccgtgc
      841 tcatcaaccc gacgttcgcc ccgctcggcg acctcgagga agagggctgg gaaggctgcc
      901 tctcggtgcc cggtctgcgc gccgtcgtgc cgcgctgggc gcgcatccgc tatgccggct
      961 tcgatcccgc cggcgagcgc atcgagcgcg aggccgaggg atttcacgcg cgcgtggtgc
     1021 agcacgagtg cgaccacctg atcggcacgt tgtatcccat gcgggttcgc gatttcaggc
     1081 gcttcggatt tacgagcgtg ctgtttccgg attcggatca ggacggcatg ctcgacgatt
     1141 gaccttcgcg gtttgtaaag gaacgtttcg tcggcgtagg ctcggtcggc gcgggtgccg
     1201 ccgcaagcgt tgatggaaag cggcgccagc gcgccgtgcc gcgagttctc tgggctcgcg
     1261 gcgattcagc agccgaggcc gcagcatgaa ttcaatcttt cgtttcccag ggcgtcagct
     1321 cctcgccgcc gtgctgggcg cagccgcctg cctgggggcg ctggtcggcg ctccggcctt
     1381 ggcgcagtcg cccgatgtcg acccgccggg ccgcgtcgcc cgcatcgccg agaccttcgg
     1441 ccaagtctgg atctacacca ccgacacggg cgaatggatc agtgcgctgc gcaatcgccc
     1501 ggtgacgagc ggcgaccggc tcgccaccga cgtcggagcg cgcgtcgagc tcaatctcgg
     1561 ttcgaccacg ctgcgcctcg atggcggcag cgaaatcgaa gtgcggcgcc tggacgacac
     1621 cctggtcgca ctccagttgc accacggctc ggcggcggtc cacgtgcgcg acgcgcaggc
     1681 ggtcggcgag ttcgagatga cgaccgagga agggcgcctg cggctgcaac gcgccggcca
     1741 cgaccgct
//
LOCUS       DASVHM010000936         5282 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_359438, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000936 DASVHM010000000
VERSION     DASVHM010000936.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5282
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359438"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1195)
                     /locus_tag="VF308_17200"
     CDS             complement(<1..1195)
                     /locus_tag="VF308_17200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438442.1"
                     /translation="MLRWPVLRIPLHPRCGRALAGALLCLLTLDAAAQTYTSASTAFN
                     LIDSSTHTKVGYNTAPYKFNAAAGCGTAPPALDDVLSDPIPIGFTFPYGSNTYTTAYI
                     MSNGRLQFGNTTCGYGTASTGPPQTYPYGYPDASMNATMKVFDVDLDLTNLVDSPGYP
                     SPCASSATCYVSVATIGTAPTRQFVVSWKNVPEWVSASNTSGSFDLQIILNEDGSFVY
                     QYGTIIHGGTGTAQIGWQLSTSDYQVLSFGASLEPPPNTAIVFYMPTPVAAYRFDEGA
                     WLPGVAGQVLDSSGYANHGSSVGAAQESSDGKVCRGANIPLNTSASQVDAVRLVDISN
                     AALNLRGSGTVAFWYKANAAWVGGQAAQLLDATTVNGEWFYLTRTPTGTLYFAVKDST
                     GVLRTV"
     gene            complement(1250..1663)
                     /locus_tag="VF308_17205"
     CDS             complement(1250..1663)
                     /locus_tag="VF308_17205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEX7438443.1"
                     /translation="MKTRQSGFTMIELIVVIVILGVLAATALPKFINMRGDAEQAAAD
                     GIAGAATSAMNLNFSGCSLTNHVVTANKCAQISACSQVGTILQGGLAVAYTAAPNVAG
                     ADIGVTDGNTAVCKVSKTVGATTYTSTFTGASAGN"
     gene            complement(2086..3321)
                     /locus_tag="VF308_17210"
     CDS             complement(2086..3321)
                     /locus_tag="VF308_17210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEX7438444.1"
                     /translation="MNYAYTGRSSEGAVSGMLDGTNAVAVADALMARGVTPLTISQAA
                     SAPRAEQQGSFAETLQRWMQPRVQPVDLLLFSRQLHTLLKAGVPILRALAGLQESAPN
                     PRMKQILQQVRQSLGSGIDLSMSFAQQGRVFDGFYVALVHVGEMTGRLEEVFLRLFHH
                     IEFEIYMGQQIKAALRYPMFVLAAMVAGVSVINVMVIPAFESVFKGFGAELPLATRML
                     MATSSFTIEYGWLLLMVVAAGIWLLRRWIATPVGRLIWDRTKLRLPLAGKIIRKGLLA
                     RFARSFALSLKSGVPVEQALSVVAQTVENAHIAQKIEGMRESVEHGESILRAAAAAGV
                     FTPIVLQMIAVGEETGAIDELMDEVAGLYTNEVQYELKTLGQQIEPILIVVLGVLVLV
                     LALGVFLPVWDLGRVGLKH"
     gene            complement(3318..5033)
                     /locus_tag="VF308_17215"
     CDS             complement(3318..5033)
                     /locus_tag="VF308_17215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HEX7438445.1"
                     /translation="MPRPERIRLGDLLVQQALITEAQLAEALAAQRSSGRKLGRTIVD
                     NGWVDEIQIAKALAKQLRAPFVDMSKRSVRPEVARLLPETQARRLRALPLEETPAGVR
                     VGMADPTDLAAYDEVSRIMKREIELAVVAESELLVAIDRSYHRTEEIAGLAKELGTEL
                     ASVHEELGDLLGLHSASTEDAPVARLLYSVFEEALRVRASDIHVEPQERSLRIRYRID
                     GMLHVQTEADPKIASAVALRLKLMSGLDISEKRLPQDGRFAVKLRSGGIDVRISTMPT
                     QHGESVVMRLLTQNGGLLSLAGLNLPPRVAQALQRAIARPSGMVLVTGPTGSGKTTTL
                     YAALNALNSTERKIITVEDPVEYRLAGLNQVQVMEKIDLSFDRVLRASLRQDPDVILV
                     GEMRDQKTAEIGMRAALTGHLVLSTLHTNDAVSTPLRLLDMGVARYMVALSLQLVVAQ
                     RLLRVVCPHCAEPYEPAPNEHAWLAGLVTPAELAGAQLRRGRGCSQCNHTGHIGRTGV
                     FECIEMTQELIDALNHGEPGAFTEAARRQLGGHTLTRDALRLVLEGRSTVEDAMRIDN
                     LVEEA"
     gene            complement(5044..>5282)
                     /locus_tag="VF308_17220"
     CDS             complement(5044..>5282)
                     /locus_tag="VF308_17220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438446.1"
                     /translation="VRVRNGQIVAIGGLMTQELRDDRTGLPVLSDVPVFGGLFRQKTG
                     SLSKRELVILIKPSVIGDEGPWPEAEALPPVAKR"
BASE COUNT          806 a         1771 c         1854 g          851 t
ORIGIN      
        1 cgacggtgcg caggaccccg gtactgtcct tcaccgcgaa atagagcgta ccggtcggcg
       61 tgcgagtcag gtagaaccac tcgccgttga cggtggtggc atcgagcagt tgcgccgcct
      121 gaccgccgac ccaggcggcg ttggccttgt accagaacgc gaccgtgcca gacccccgca
      181 ggttgagggc ggcgttggag atgtccacca gccggaccgc gtcgacctgc gatgcgctgg
      241 tgttcaacgg gatgttcgca ccgcgacaga ccttgccgtc gctgctctcc tgcgccgccc
      301 ccacgctcga gccgtggttg gcatagcccg aactgtcgag cacctggccg gccacccctg
      361 gcaaccaggc gccttcgtcg aagcgatagg cagcgaccgg cgtcggcatg tagaacacga
      421 tcgcggtgtt cggcggcggc tccagcgacg cgccgaaact cagcacctgg tagtcgctcg
      481 tcgacagttg ccagccgatc tgcgcggtgc cggtgccgcc gtggatgatc gtgccgtact
      541 ggtagacgaa gctgccgtcc tcgttgagga tgatctgcag gtcgaacgac ccgctggtgt
      601 tggaggccga gacccactcc ggcacgttct tccagctcac gacgaactgg cgtgtcggcg
      661 cggtgccgat cgtcgccacg ctgacgtagc aggtcgcgct gctcgcgcag ggcgacggat
      721 agccggggct gtcgacgaga ttggtgaggt ccaggtcgac gtcgaacacc ttcatggtgg
      781 cgttcatgct cgcgtccgga tacccgtacg gatacgtctg cggcggaccg gtgctggcgg
      841 tgccgtagcc gcaggtcgtg ttgccgaact ggagccggcc gttgctcatg atgtaggccg
      901 tggtgtacgt gttgctaccg tacgggaacg tgaagccgat cgggatcgga tcgctcagca
      961 cgtcgtcgag cgcaggcggc gcggtgccgc aaccggccgc ggcgttgaac ttgtagggcg
     1021 ccgtgttgta gccgaccttg gtgtgggtgc tcgaatcgat gaggttgaac gcggtcgacg
     1081 cgctcgtgta cgtctgcgcc gcggcgtcga gcgtcagcag gcaaagcagc gcgccggcca
     1141 gcgcccggcc gcaccgaggg tgcagcggga tgcgcaggac gggccagcgg agcatgggcg
     1201 gcttcggtcg cgcgggcgcg cggcgcaagc gccgcccgtt gcgtaggcgt cagttgccgg
     1261 ccgaagcgcc ggtgaatgtc gacgtgtacg tggtcgcacc gaccgtcttg ctcaccttgc
     1321 agaccgcggt gttgccgtcg gtcacgccga tgtctgcgcc ggcgacgttc ggcgccgcgg
     1381 tgtaggccac cgcgaggccg ccctggagga tcgtgccgac ctggctgcag gcgctgatct
     1441 gggcgcactt gttcgcggtg acgacgtggt tcgtcagcga gcaaccgctg aagttgaggt
     1501 tcatcgccga ggtcgcagcg ccggcgatgc cgtcggcggc agcctgttcg gcgtcgccgc
     1561 gcatgttgat gaacttcggc agcgcggtgg cggcgagcac gccgaggatg acgatgacga
     1621 cgatcagttc gatcatcgtg aagccggatt gacgggtttt catggaagcg gtccttatgg
     1681 ttggtgtggc cggagccgga aatttcagcg gcaggaagac attgacgaat cgaccctgga
     1741 cgcagctcct gccggagacg ccgggatggg aaagaccgac gccggcaacg aagccgacgc
     1801 gatcgatgga tagtcgcagc gcgcctggtt caaggccgcc acagcgcgcg tctgcgccgc
     1861 cgcggtctcg agccgggctt cgcgcaccga gacctgcaat tccgcgatcc gcccgagccc
     1921 gaaggccacg atcagcccga tcacgaccag cgcgagcgcg aactcgagcc gcgcgactcc
     1981 agccgcggcg tgcggcgagt ggcgtgagga gggtgtcggg catggcggtg gttctcggtg
     2041 acgtggctgc gggcaggagt ccatggggat atcggtcggc gcggctcaat gcttgagccc
     2101 gacgcgcccg aggtcccaca ccggcaggaa cacgccgagc gcgagcacga gcacgagcac
     2161 acccagcacc acgatcagga tcggctcgat ctgctggccg agcgtcttga gctcgtactg
     2221 cacctcgttg gtgtagagcc cggcgacctc gtccatcagt tcgtcgatcg cgccggtctc
     2281 ctcgccgacg gcgatcatct gcagcacgat gggcgtgaag acgcccgcgg cggcggcggc
     2341 gcgcaggatc gactcgccgt gctcgacgct ctcgcgcatg ccttcgatct tctgcgcgat
     2401 gtgcgcgttc tcgaccgtct gggccacgac cgagagcgcc tgctcgaccg gcacgccgct
     2461 cttgagcgag agcgcaaagc tgcgcgcgaa gcgcgcgagc aggcccttcc tgatgatctt
     2521 gccggcgagc ggaaggcgca gtttcgtgcg gtcccagatc aagcggccga ccggcgtggc
     2581 gatccagcgc cgcaacagcc agatgcccgc ggccacgacc atcaacagca gccagccgta
     2641 ttcgatcgtg aacgaggacg tcgccatcag catccgagtc gcgagcggca attccgcgcc
     2701 gaagcccttg aagacgctct cgaaagcagg aatgaccatc acgttgatga ccgagacgcc
     2761 ggccaccatc gccgccaaca cgaacatcgg gtagcgcagc gccgccttga tctgctgccc
     2821 catgtagatc tcgaactcga tgtggtggaa caggcgcagg aacacttcct cgaggcgccc
     2881 ggtcatctcg ccgacgtgga ccagcgcgac gtagaagccg tcgaagacgc gcccctgctg
     2941 tgcgaacgac atcgagaggt cgatccccga gccgagactc tggcgcacct gctgcaggat
     3001 ctgcttcatg cgcgggttgg gcgccgactc ctgcagcccg gccagcgccc gcaggatcgg
     3061 cacgcctgcc ttcaacagcg tgtgcagctg gcggctgaag agcagcaggt cgaccggttg
     3121 aacgcgcggc tgcatccagc gctgcagcgt ctccgcgaag ctcccctgct gctcggcgcg
     3181 cggcgccgac gcggcctgcg aaatcgtcag cggcgtcacg ccgcgcgcca tcagcgcgtc
     3241 ggccaccgcg accgcgttcg tgccgtcgag catgccactg acggcgccct cgctcgaccg
     3301 gccggtgtag gcgtagttca cgcttcctcg accaggttgt cgatgcgcat ggcgtcctcg
     3361 accgtcgagc gcccttcgag cacgaggcgc agcgcatcgc gcgtcagcgt gtggccgccg
     3421 agctggcgcc gtgcggcttc ggtgaaggcg cccggctcgc cgtggttcag cgcgtcgatc
     3481 agttcctgcg tcatctcgat gcactcgaag acgccggtgc gaccgatgtg accggtgtgg
     3541 ttgcactggc tgcagccgcg tccgcggcgc agctgcgccc ctgcgagctc ggccggcgtg
     3601 accagcccgg ccagccacgc gtgctcgttc ggcgcgggtt cgtacggctc ggcgcagtgc
     3661 gggcagacga cgcgcagcag ccgctgcgcg accacgagct ggagcgagag cgccaccatg
     3721 tagcgggcca cacccatgtc gagcaggcga agcggcgtcg acaccgcgtc gttggtgtgc
     3781 agcgtggaga gcacgaggtg accggtgagc gcggcacgca tgccgatctc ggcggtcttt
     3841 tggtcgcgca tctcgccgac caggatcacg tccgggtcct gccgcaacga cgcgcgcagc
     3901 acgcggtcga agctcaggtc gatcttctcc atcacctgga cctggttcag gccggccagc
     3961 cggtactcga ccgggtcctc gacggtgatg atcttgcgct cggtgctgtt cagcgcgttc
     4021 agcgccgcgt agagcgtcgt ggtcttgccg ctgccggtcg ggccggtgac gagcaccatg
     4081 ccgctcggcc tggcgatggc gcgctgcagg gcctgcgcga cgcgcggcgg caggttcagg
     4141 ccggccagcg agagcaggcc gccgttctgc gtcagcagcc gcatcacgac cgactcgccg
     4201 tgctgggtcg gcatggtcga gatccgcacg tcgatgccgc cgctgcgcag cttcaccgcg
     4261 aagcggccgt cctgcggcag gcgcttttcc gagatgtcga ggcccgacat cagcttcagg
     4321 cgcaacgcca ccgcgctcgc gatcttcggg tcggcctcgg tctgcacgtg caacatgccg
     4381 tcgatgcgat agcggatccg cagcgagcgc tcctgcggct cgacgtggat gtcggacgcg
     4441 cgcacgcgca gcgcttcctc gaacacggag tacagcaggc gcgcgaccgg cgcgtcttcg
     4501 gtgctcgcgc tgtggaggcc gagcaggtcg ccgagttcct cgtgcacgct ggcgagttcg
     4561 gtgccgagct ccttggcgag gcccgcgatc tcctcggtgc ggtggtatga acgatcgatg
     4621 gcgacgagca gctcgctctc ggccacgacg gcaagctcga tctcgcgctt catgatgcgc
     4681 gagacttcgt cgtacgcggc caggtcggtc gggtcggcca tgccgacccg cacgccggcc
     4741 ggcgtctcct cgagcggcag cgcgcgcagg cgccgggcct gggtctcagg cagcaaccgt
     4801 gcgacttcgg gccgcacgct gcgcttgctc atgtcgacga agggcgcgcg caactgcttg
     4861 gccaatgcct tggcgatctg gatctcgtcg acccagccgt tgtcgacgat cgtgcggccg
     4921 agcttgcggc cgctgctgcg ctgcgcggcc agcgcctcgg cgagctgcgc ttcggtgatc
     4981 agcgcctgct gcaccagcag gtcgccgagt cggatgcgtt ccgggcgggg cacggtcttc
     5041 ggctcagcgt ttcgcgaccg gcggcagggc ttcggcctcg ggccaagggc cctcgtcgcc
     5101 gatcaccgag ggcttgatca agatcacgag ttcgcgcttc gacagcgagc ccgtcttctg
     5161 gcggaagagc ccaccgaaaa ccggcacgtc gctcagcacc ggcaggccgg tgcggtcgtc
     5221 gcgcagttcc tgcgtcatca agccgccgat ggcgacgatc tggccgttgc gcacccgcac
     5281 ga
//
LOCUS       DASVHM010000937         5399 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Caldimonas sp. isolate SMAG_U2967 k141_71400, whole
            genome shotgun sequence.
ACCESSION   DASVHM010000937 DASVHM010000000
VERSION     DASVHM010000937.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37959599
            Sequence Read Archive: SRR10489811
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caldimonas sp. (soil metagenome)
  ORGANISM  Caldimonas sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Sphaerotilaceae; Caldimonas.
REFERENCE   1  (bases 1 to 5399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 23:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,390
            CDSs (with protein)               :: 3,390
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5399
                     /organism="Caldimonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71400"
                     /isolate="SMAG_U2967"
                     /isolation_source="soil"
                     /db_xref="taxon:2838790"
                     /environmental_sample
                     /country="Russia: Chersky"
                     /lat_lon="68.6125 N 161.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VF308_17225"
     CDS             <1..216
                     /locus_tag="VF308_17225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA C4-type zinc finger protein"
                     /protein_id="HEX7438447.1"
                     /translation="EHALELRTRDRERKLLKKISQSLARIESGEYGFCDETGEPIGLG
                     RLIARPTATLSLEAQQRRELKQKMFGD"
     gene            367..2076
                     /locus_tag="VF308_17230"
     CDS             367..2076
                     /locus_tag="VF308_17230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014430556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX7438448.1"
                     /translation="MAEPKDTTSFFRKVVKFVANPSTEWAELDAPTEELRENEYAKGE
                     LKAMIERKRRNDFVRKREFDMLRKVRREGLSGEQLAALGGSSRLDDSEPRQPDSGARQ
                     DSGVKAKIDEIEQQMVGDNYPATSRRRPEFYNAPTAPAPLEMRPARTDPPPVETQGGR
                     VEDFIPEAPPPPAPSPRPAAARAGAVQLSLVNLDAAAGELGKAFAASNTEVTHDPDLD
                     EAVIAFANADFEQCEQAMLTLTGTGGPRAQHAETWLVLFDLYRAIGQQHKFESLALDY
                     AQQFGWSAPQWFSMPRLVAEAAREERPRSSRIEGQVGWVCPDHLDADGVAKLASLALQ
                     MPLPWVFDWGAMKSIDVEACARLSELFRSWIPQDLDMRWLSGERLFTVLQESAPNGAR
                     DADPAYWQVRLDVLRMTNRPDQFDEAAIDYCVTYEVSPPSWEAARCEVRVSGSNQGTT
                     QPPLSVVSDVSTSFQESTLTDVSNMIQVGSVELSGQLVGDIGLTLGKMDAELGTAKIV
                     NVSCARLIRVDFIAAGDLLNWVLARRAEDRTVNFLDAHRMVALFFGAMGINEHATVKV
                     RTV"
     gene            2157..2693
                     /gene="hslV"
                     /locus_tag="VF308_17235"
     CDS             2157..2693
                     /gene="hslV"
                     /locus_tag="VF308_17235"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEX7438449.1"
                     /translation="METWHGTTILSVRRGNVVALGGDGQVTLGNVVVKSTAKKVRKLH
                     HDRVLAGFAGATADAFTLFERFEAKLEKHQGNLVRAAIELTKDWRTDRVLRRLEAMLA
                     VADRESSLIITGTGDVLEPELGIVSIGSGGSYAQAAARALLEHTELAPRDIVKKSLEI
                     AAELCIYTNQNHVIETLD"
     gene            2749..4074
                     /gene="hslU"
                     /locus_tag="VF308_17240"
     CDS             2749..4074
                     /gene="hslU"
                     /locus_tag="VF308_17240"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEX7438450.1"
                     /translation="MTPQEIVSELDRHIVGQAQAKRAVAIALRNRWRRQQIDEPMRAE
                     ITPKNILMIGPTGVGKTEIARRLARLAAAPFIKVEATKFTEVGYVGKDVDTIIRDLVD
                     MAVKQERETAMRRQHARAEDAAEDRVLDILVPGARAEFGIAPAPSPDNTARQVMRKRL
                     REGSLDDKEIEIEVADPRPALEIMGPAGMEEMTEQLKGMFANIGGIKRKSRKLRIGDA
                     RKLLLEEEAAKLVNDDEVKTRALANAEQNGIVFIDEIDKVTSRSESTGGPDVSRQGVQ
                     RDLLPLVEGTTVNTKYGMVKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELSSLG
                     VDDFEAILTQTHASLVKQYTLLLATEGVRLEFKAEAIRRIAQIAFDVNERTENIGARR
                     LSTVMERLLDEVSFDAPNRDGQTVALDAAAVNDKLAELAQDEDLSRYIL"
     gene            complement(4077..4544)
                     /locus_tag="VF308_17245"
     CDS             complement(4077..4544)
                     /locus_tag="VF308_17245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019652383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEX7438451.1"
                     /translation="MSEYTAEVIWVRGAQDFLSGRYSRRHLLRFDGGVEVAGSSSPHV
                     VPLPLSDAAAVDPEEAFVAALASCHMLFFLSIAASRKFCVERYRDDAVGTLAKDADGK
                     LAMTEVVLRPQVEFSGPQMPTQRELDAMHHSAHEQCFIANSVKTEVRVRSQSL"
     gene            complement(4572..5339)
                     /locus_tag="VF308_17250"
     CDS             complement(4572..5339)
                     /locus_tag="VF308_17250"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009548522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004594 - pantothenate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEX7438452.1"
                     /translation="MSFLAIDVGNTRLKWAQYASPQPGATLLAHGAVFLEAMDELADN
                     DWKRLAPPSSMLGCVVAGEGVKRRAEEQLELWDLAPRWVVSSAHACGVTNGYEHPNRL
                     GVDRWVALIGAWHRVLARGPARPALVVMVGTAVTVDALDHTGRFLGGLILPGFGLMLR
                     ALEMGTAGLKAPTGEVVDFPTNTSDALMSGGADAMAGAVERMHRKLSRRTGQAPVLIM
                     TGGAAVKLAPITDLAFETVDNLIFEGLLQLQARRLAL"
BASE COUNT          973 a         1865 c         1771 g          790 t
ORIGIN      
        1 gaacatgccc tcgagttgcg cacgcgcgac cgcgaacgca agcttttgaa gaagatttca
       61 cagtctcttg cacgcatcga atccggtgag tatggtttct gtgacgaaac cggcgaaccc
      121 atcggattgg ggcgcctgat cgcccgcccg accgctacac tctcgctcga ggcccaacag
      181 cggcgtgaac tcaagcaaaa aatgttcggt gactgaagct ggacgacaag acgtccctgc
      241 ggacggtttg gcgcctgccg aaggacaatt cgcctgcaag cgaattggca tgagcgtcgc
      301 gagggatccc cgtcgtcgcc tgttcccggg caggcgcatg tccgcttgct gacaggccga
      361 ctcgacatgg cggaacccaa agacacgacg agcttctttc gcaaggtggt caagttcgtg
      421 gccaacccgt cgacggagtg ggccgagctt gacgccccga ccgaagagct gcgcgaaaac
      481 gaatacgcca agggcgagct caaggcgatg atcgagcgca agcgtcgcaa cgatttcgtc
      541 cgcaagcgcg aattcgacat gctgcgcaag gtccggcgcg aaggcctgtc cggcgaacag
      601 ctcgccgccc tcggcgggtc ctcgcggctc gacgactccg aaccgcgcca acccgacagc
      661 ggcgcccgcc aggacagcgg cgtcaaggcc aagatcgacg agatcgagca gcagatggtc
      721 ggcgacaact acccggccac gtcgcgccgc aggcccgagt tctacaacgc cccgaccgct
      781 cccgcgccgc tcgagatgcg gcccgcccgc accgacccgc cgccggtcga gacgcaaggc
      841 ggcagggtcg aagacttcat ccccgaggcg cctccgccac ccgcgccgag cccgcgcccg
      901 gcagccgccc gcgccggcgc tgtgcagctc tccctggtca acctcgacgc ggcggccggc
      961 gaactcggca aggcctttgc cgcttcgaat accgaagtca ctcacgatcc ggacctcgat
     1021 gaagcggtga tcgcgttcgc gaacgccgat ttcgagcaat gcgagcaagc gatgctgacg
     1081 ctgaccggca ccggcggacc gcgtgcgcag catgccgaaa cctggctcgt gctcttcgac
     1141 ctgtaccggg cgatcggcca gcagcacaag ttcgagagcc tcgcgctcga ctacgcgcaa
     1201 cagttcggct ggtcggcgcc gcaatggttc tcgatgccgc gcctggtcgc cgaagcggcg
     1261 cgcgaagagc gtccgaggag ttccaggatc gagggccagg tcggttgggt ctgccccgac
     1321 catctcgatg ccgacggggt ggcgaagctc gcctcgctcg ccttgcagat gccgctgccc
     1381 tgggtcttcg attggggcgc gatgaagagc atcgacgtcg aggcctgcgc gcgcctgagc
     1441 gaactgtttc gcagctggat tccgcaggac ctcgacatgc gctggctgag cggcgagcgc
     1501 ctgtttacgg tgctccagga atccgcgccg aacggcgcgc gcgacgccga tccggcctac
     1561 tggcaggtgc ggctcgacgt cttgcgcatg acgaaccggc ccgatcagtt cgacgaggcg
     1621 gcgatcgact actgcgtcac ctacgaggtc tcgccgccgt cgtgggaggc ggcgcgctgc
     1681 gaggtgcgtg tgagcggctc gaaccagggc acgacgcagc cgccgctctc ggtggtgagc
     1741 gatgtctcga ccagcttcca ggaatccacg ctcaccgacg tgtcgaacat gatccaagtc
     1801 ggcagcgtgg aactgtcggg ccaactcgtc ggcgacatcg gcctcacgct cggcaagatg
     1861 gatgccgaac tcggcacggc gaagatcgtc aacgtctcgt gcgcgcggct catccgcgtc
     1921 gatttcatcg ccgccggcga tctgctcaat tgggtgctgg cgcggcgcgc cgaggaccgc
     1981 accgtcaact tcctcgatgc gcaccgcatg gtcgcgctct ttttcggggc gatgggcatc
     2041 aatgagcacg cgaccgtgaa ggtgcgcacc gtctgaggtg cgcgcgccga tcgattcgcg
     2101 cccgggatcg cggcggctcc gcttgaaatg atccgcgcag cctacatctg cggctgatgg
     2161 aaacctggca cggcacgacc atcctcagcg tgcgccgcgg caacgtggtc gcgctcggcg
     2221 gcgacggcca ggtcacgctc ggcaacgtcg tcgtcaagtc gaccgcgaag aaggtgcgca
     2281 agctccacca cgaccgcgtg ctggcgggct tcgccggggc caccgccgat gcgttcacgc
     2341 tgttcgagcg cttcgaggcg aagctcgaaa agcatcaggg caacctcgtc cgcgccgcga
     2401 tcgaactgac caaggattgg cgcaccgacc gcgtcctgcg ccggctcgag gcgatgctcg
     2461 cggtggccga ccgggaaagc tcgctgatca tcaccggcac cggcgacgtc ctcgagcccg
     2521 aactcggcat cgtgtcgatc ggctcggggg gctcgtacgc ccaggcggcg gcgcgcgcgc
     2581 tgctcgaaca caccgaactc gcgccgcgcg acatcgtcaa gaagtcgctc gagatcgcgg
     2641 ccgagctctg catctacacg aatcagaacc atgtcatcga aaccctcgac tgagctggcc
     2701 gaggccgccc cgcgcgaggc gccgccgaaa tcgtttcctg caagtgcgat gacgccgcag
     2761 gaaatcgtct ctgagctcga ccgccacatc gtcggccagg cccaggccaa gcgggccgtc
     2821 gctatcgcgc tgcgcaaccg ctggcggcgc cagcagatcg acgagccgat gcgtgccgag
     2881 atcacgccca agaacatcct gatgatcggt ccgaccggcg tcggcaagac cgagatcgcg
     2941 cggcgcctgg cccggctcgc cgccgcgccc ttcatcaagg tcgaggcgac gaagttcacc
     3001 gaggtcggct atgtcggcaa ggacgtcgac accatcatcc gcgatctggt cgacatggcc
     3061 gtgaagcagg agcgcgagac cgccatgcgg cgccagcacg cgcgcgccga ggacgcggcc
     3121 gaggatcggg tgctcgacat cctggtgccg ggggcgcgtg ccgagttcgg catcgcgccg
     3181 gctccttccc ccgacaacac cgcacgccag gtgatgcgaa agcgcctgcg cgaaggatcg
     3241 ctcgacgaca aggagatcga gatcgaggtc gccgacccga ggcctgcgct cgagatcatg
     3301 ggaccggccg gcatggaaga gatgacggaa cagttgaagg gcatgttcgc caacatcggc
     3361 ggcatcaagc gcaagagccg caaactgcgc atcggcgatg cgcgcaagct cctgctcgag
     3421 gaagaggcgg ccaagctcgt caacgacgac gaggtgaaga cccgcgcgct cgccaacgcc
     3481 gagcagaacg gcatcgtctt catcgacgag atcgacaagg tcacgtcgcg ttcggagtcg
     3541 acgggcggcc ccgacgtgtc gcgccagggc gttcagcgcg acctgctgcc gctcgtcgaa
     3601 ggcacgacgg tcaacaccaa gtacggaatg gtcaagaccg accacatcct tttcatcgcc
     3661 tccggcgcgt tccatctcag caagccgagc gacctgatcc ccgagctgca ggggcgcttt
     3721 ccgatccgcg tcgagctcag ctcgctcggc gtcgacgatt tcgaggcgat cctgacgcag
     3781 acccatgcga gcctcgtcaa gcagtacacg ctcctgctcg cgaccgaggg cgtgcggctc
     3841 gagttcaagg ccgaggcgat ccggcgcatc gcgcagatcg cgttcgacgt caacgagcgc
     3901 accgagaaca tcggcgcgcg gcgcctgtcg acggtgatgg aacggctcct cgacgaggtc
     3961 agtttcgatg cgccgaaccg cgacggccag accgtcgcgc tcgatgccgc ggcggtgaac
     4021 gacaagctcg ccgagctcgc gcaggacgaa gacctgtcgc gctacatcct ctgacgctac
     4081 aggctctgcg accgcacgcg cacctcggtc ttcaccgagt tggcgatgaa gcactgctcg
     4141 tgcgcgctgt ggtgcatggc gtcgagttcg cgctgcgtgg gcatctgcgg gcctgaaaac
     4201 tcgacctggg gccgcagcac gacctcggtc atcgcgagct tgccgtccgc gtccttggcg
     4261 agcgtgccga cggcgtcgtc ccggtagcgc tcgacgcaga acttgcggct cgccgcgatc
     4321 gacaggaaga acagcatatg gcaactcgcg agcgcggcga cgaaggcttc ttccgggtcg
     4381 accgcggccg catccgacag cggcagcggc accacgtgcg gcgaggacga ccctgccacc
     4441 tcgaccccgc cgtcgaagcg caacagatgg cgccggctgt agcgcccgga caggaaatcc
     4501 tgcgcgccgc gcacccagat cacttcggcg gtgtactcgg acatggttcg atccctggca
     4561 tgcaccaggc cctaaagcgc gaggcgtcgc gcctgcagtt gcagcaagcc ctcgaagatc
     4621 aggttatcga cggtctcgaa agccaggtcg gtgatcggag cgagcttgac cgccgcgccg
     4681 ccggtcatga tcagcaccgg cgcctgtccg gtccgccgcg acagcttgcg atgcatgcgt
     4741 tcgaccgcac cggccatcgc atcggcgccg ccgctcatca acgcatcgct ggtgttggtc
     4801 gggaaatcga cgacctcgcc ggtcggcgcc ttcaggccgg cggtgcccat ttcgagcgcc
     4861 cgcagcatca ggccgaaacc cggcaggatc aagccgccca ggaagcggcc ggtgtgatcg
     4921 agcgcatcga ccgtcacggc ggtgcccacc atcacgacca gcgccggccg cgccggaccg
     4981 cgcgccagaa cgcggtgcca ggcgccgatg agcgccaccc agcggtcgac gcccaggcgg
     5041 ttcggatgct cgtatccgtt ggtcacgccg caggcatgag ccgacgacac gacccaacgc
     5101 ggcgccagat cccagagctc gagctgctct tcggcgcgcc gcttcacgcc ttcaccggcc
     5161 accacgcaac cgagcatgct cgaggggggc gcgaggcgct tccagtcgtt gtcggcgagc
     5221 tcgtccatcg cttcgagaaa gaccgcgccg tgcgccagca aggtcgcccc cggctgcggc
     5281 gaggcgtact gcgcccactt caggcgggtg ttgccgacgt cgatcgcgag aaagctcatg
     5341 cggatgtccg aaacgtgctg ctcaagcggc cgacggtgtc gtatcgctag cccgggcca
//
